##gff-version 3 ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= scaffold1 SAMTools SNP 18586 18586 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 18600 18600 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1 SAMTools SNP 18913 18913 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1 SAMTools SNP 21342 21342 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C84%2C0:99 scaffold1 SAMTools SNP 21381 21381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1 SAMTools SNP 23620 23620 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C254:99 scaffold1 SAMTools SNP 23662 23662 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C27%2C0:51 scaffold1 SAMTools SNP 24465 24465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C7%2C6%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.26%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1 SAMTools SNP 26292 26292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1 SAMTools SNP 26502 26502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C14%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.087%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1 SAMTools SNP 26967 26967 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1 SAMTools SNP 26982 26982 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1 SAMTools SNP 27100 27100 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.38%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1 SAMTools SNP 32384 32384 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 32386 32386 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1 SAMTools SNP 38464 38464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 53055 53055 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 69876 69876 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1 SAMTools SNP 73746 73746 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1 SAMTools SNP 73762 73762 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1 SAMTools SNP 74178 74178 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 74238 74238 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 204189 204189 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 207536 207536 31.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1 SAMTools SNP 208178 208178 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 208562 208562 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 208621 208621 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1 SAMTools SNP 209366 209366 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1 SAMTools SNP 209442 209442 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 209456 209456 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1 SAMTools SNP 237536 237536 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 241799 241799 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 241826 241826 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 336485 336485 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1 SAMTools SNP 341146 341146 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1 SAMTools SNP 341160 341160 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 12576 12576 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 12585 12585 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 13149 13149 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 14662 14662 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold100 SAMTools SNP 16263 16263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 58277 58277 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.00076%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C20:23 scaffold100 SAMTools SNP 61950 61950 91.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold100 SAMTools SNP 61994 61994 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 72716 72716 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold100 SAMTools SNP 86468 86468 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6716%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3068%2C361%2C1185%2C331%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-24%2C1%2C1%2C1.2e-57;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 86591 86591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7670%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3685%2C6%2C3928%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 90163 90163 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold100 SAMTools SNP 90498 90498 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold100 SAMTools SNP 91740 91740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C9%2C6%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.65%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold100 SAMTools SNP 92054 92054 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold100 SAMTools SNP 92593 92593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 93204 93204 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 93237 93237 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.32%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 93885 93885 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold100 SAMTools SNP 93897 93897 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold100 SAMTools SNP 94622 94622 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 94658 94658 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C121:99 scaffold100 SAMTools SNP 95511 95511 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C249:99 scaffold100 SAMTools SNP 95529 95529 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C250:99 scaffold100 SAMTools SNP 97823 97823 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C16%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0071%2C3.7e-09%2C1%2C9.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold100 SAMTools SNP 97852 97852 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 97870 97870 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C9.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 97879 97879 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C3%2C10%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.4%2C0.34%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold100 SAMTools SNP 98571 98571 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C14%2C3%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.00035%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold100 SAMTools SNP 98598 98598 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1.5e-06%2C0.26%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold100 SAMTools SNP 98613 98613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C6%2C46%2C8%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D6e-05%2C0.0016%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C35:38 scaffold100 SAMTools SNP 99058 99058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold100 SAMTools SNP 99897 99897 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C10%2C0%3BMQ%3D49%3BFQ%3D155%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold100 SAMTools SNP 100331 100331 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold100 SAMTools SNP 100347 100347 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.57%2C5.9e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold100 SAMTools SNP 113018 113018 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold100 SAMTools SNP 132573 132573 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold100 SAMTools SNP 135438 135438 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0032%2C0.04%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold100 SAMTools SNP 135826 135826 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C10%3BMQ%3D49%3BFQ%3D197%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C237:99 scaffold100 SAMTools SNP 138061 138061 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C10%3BMQ%3D49%3BFQ%3D169%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold100 SAMTools SNP 138066 138066 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C16%3BMQ%3D49%3BFQ%3D169%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold100 SAMTools SNP 140049 140049 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C22%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.22%2C5.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold100 SAMTools SNP 142297 142297 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C29:32 scaffold100 SAMTools SNP 142564 142564 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.37%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold100 SAMTools SNP 145096 145096 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold100 SAMTools SNP 160382 160382 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold100 SAMTools SNP 211027 211027 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 227075 227075 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold100 SAMTools SNP 236351 236351 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold100 SAMTools SNP 236735 236735 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D47%3BFQ%3D124%3BPV4%3D1%2C0.089%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C151:99 scaffold100 SAMTools SNP 236900 236900 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C1%2C5%3BMQ%3D44%3BFQ%3D90%3BPV4%3D0.65%2C1%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold100 SAMTools SNP 236904 236904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 236945 236945 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C2%2C7%3BMQ%3D44%3BFQ%3D86%3BPV4%3D0.63%2C0.099%2C0.18%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold100 SAMTools SNP 237011 237011 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold100 SAMTools SNP 237486 237486 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C5%3BMQ%3D37%3BFQ%3D15.1%3BPV4%3D1%2C0.045%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 237642 237642 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 238653 238653 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 238671 238671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 238806 238806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 239490 239490 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 239802 239802 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 243424 243424 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 243904 243904 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C76:30 scaffold100 SAMTools SNP 243921 243921 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 243922 243922 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 243970 243970 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold100 SAMTools SNP 262082 262082 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold100 SAMTools SNP 262233 262233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold100 SAMTools SNP 267052 267052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 268170 268170 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.53%2C8.7e-06%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold100 SAMTools SNP 268957 268957 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 268960 268960 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 269011 269011 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold100 SAMTools SNP 269943 269943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 269970 269970 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold100 SAMTools SNP 269991 269991 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold100 SAMTools SNP 270089 270089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 272732 272732 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold100 SAMTools SNP 273325 273325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold100 SAMTools SNP 273382 273382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold100 SAMTools SNP 273804 273804 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 274067 274067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold100 SAMTools SNP 274595 274595 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold100 SAMTools SNP 278123 278123 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 278180 278180 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 279346 279346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold100 SAMTools SNP 279385 279385 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C69:49 scaffold100 SAMTools SNP 280055 280055 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 280061 280061 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 280136 280136 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold100 SAMTools SNP 280141 280141 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold100 SAMTools SNP 280589 280589 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.025%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold100 SAMTools SNP 280903 280903 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C0.35%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold100 SAMTools SNP 280917 280917 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold100 SAMTools SNP 280965 280965 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold100 SAMTools SNP 282516 282516 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold100 SAMTools SNP 284614 284614 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.7e-15%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C152:41 scaffold100 SAMTools SNP 285328 285328 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold100 SAMTools SNP 285383 285383 32.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold100 SAMTools SNP 286661 286661 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold100 SAMTools SNP 287096 287096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 287790 287790 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D21%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C84%2C0:99 scaffold100 SAMTools SNP 296665 296665 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.3e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold100 SAMTools SNP 296671 296671 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.06%2C0.0012%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 297341 297341 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00019%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold100 SAMTools SNP 298439 298439 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 298472 298472 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold100 SAMTools SNP 298878 298878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 299212 299212 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold100 SAMTools SNP 299259 299259 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C65:68 scaffold100 SAMTools SNP 300410 300410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 301014 301014 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.4%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold100 SAMTools SNP 301029 301029 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 301035 301035 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 301077 301077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold100 SAMTools SNP 301858 301858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 301879 301879 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C4%3BMQ%3D44%3BFQ%3D105%3BPV4%3D0.33%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold100 SAMTools SNP 303030 303030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C13%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.73%2C0.34%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 303066 303066 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C29%2C3%3BMQ%3D44%3BFQ%3D205%3BPV4%3D1%2C0.17%2C0.19%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold100 SAMTools SNP 304760 304760 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D0.021%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold100 SAMTools SNP 304763 304763 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D47%3BFQ%3D88%3BPV4%3D0.044%2C0.0012%2C0.35%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold100 SAMTools SNP 333338 333338 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 333382 333382 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold100 SAMTools SNP 333695 333695 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 333728 333728 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.46%2C3.9e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C182:99 scaffold100 SAMTools SNP 333773 333773 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 338481 338481 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 339383 339383 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 340316 340316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold100 SAMTools SNP 340352 340352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold100 SAMTools SNP 340828 340828 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold100 SAMTools SNP 340834 340834 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold100 SAMTools SNP 341219 341219 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C51%2C0:82 scaffold100 SAMTools SNP 343975 343975 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 348171 348171 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 348529 348529 57.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold100 SAMTools SNP 348722 348722 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 348724 348724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 351708 351708 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 352036 352036 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold100 SAMTools SNP 355318 355318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold100 SAMTools SNP 356829 356829 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 356857 356857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.01%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 357295 357295 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 357322 357322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 357376 357376 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold100 SAMTools SNP 357397 357397 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.37%2C2.2e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold100 SAMTools SNP 357933 357933 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold100 SAMTools SNP 357969 357969 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold100 SAMTools SNP 357980 357980 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.35%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 359622 359622 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.029%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C136:57 scaffold100 SAMTools SNP 361646 361646 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 361696 361696 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold100 SAMTools SNP 361826 361826 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold100 SAMTools SNP 363139 363139 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2.1e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C241:84 scaffold100 SAMTools SNP 363145 363145 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C36%2C0:69 scaffold100 SAMTools SNP 365361 365361 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold100 SAMTools SNP 365859 365859 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold100 SAMTools SNP 366550 366550 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 366777 366777 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C248:99 scaffold100 SAMTools SNP 366822 366822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold100 SAMTools SNP 367076 367076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 367091 367091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C22%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 367157 367157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold100 SAMTools SNP 367526 367526 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold100 SAMTools SNP 367559 367559 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold100 SAMTools SNP 367628 367628 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold100 SAMTools SNP 368460 368460 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.22%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C159:99 scaffold100 SAMTools SNP 368639 368639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold100 SAMTools SNP 368675 368675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C29%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.43%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold100 SAMTools SNP 369004 369004 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C4%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold100 SAMTools SNP 369077 369077 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold100 SAMTools SNP 372739 372739 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 372766 372766 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold100 SAMTools SNP 374709 374709 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold100 SAMTools SNP 374910 374910 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold100 SAMTools SNP 375911 375911 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 375916 375916 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 375970 375970 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 375979 375979 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 376465 376465 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C35%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C5e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C243:74 scaffold100 SAMTools SNP 377344 377344 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold100 SAMTools SNP 377349 377349 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold100 SAMTools SNP 377476 377476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C35%2C30%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C9.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377489 377489 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C118%2C18%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377679 377679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C174%2C34%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 377778 377778 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold100 SAMTools SNP 403331 403331 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.38%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C232:99 scaffold100 SAMTools SNP 406974 406974 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold100 SAMTools SNP 409852 409852 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 413025 413025 163 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C255%2C0%2C188%2C255%2C185:99 scaffold100 SAMTools SNP 413055 413055 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C213%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 426713 426713 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold100 SAMTools SNP 427541 427541 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 427547 427547 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 435560 435560 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold100 SAMTools SNP 435852 435852 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 440564 440564 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold100 SAMTools SNP 440640 440640 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold100 SAMTools SNP 453216 453216 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold100 SAMTools SNP 455885 455885 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 458061 458061 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold100 SAMTools SNP 464372 464372 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 465710 465710 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 466246 466246 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 466811 466811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C14%2C34%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.38%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 467684 467684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C64%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold100 SAMTools SNP 467688 467688 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 470827 470827 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold100 SAMTools SNP 472038 472038 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.19%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold100 SAMTools SNP 521392 521392 82.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold100 SAMTools SNP 534837 534837 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold100 SAMTools SNP 535860 535860 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold100 SAMTools SNP 546676 546676 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold100 SAMTools SNP 546969 546969 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold100 SAMTools SNP 546973 546973 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold100 SAMTools SNP 546984 546984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 549925 549925 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 549930 549930 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 550340 550340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 551913 551913 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold100 SAMTools SNP 551928 551928 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold100 SAMTools SNP 554172 554172 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold100 SAMTools SNP 554280 554280 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold100 SAMTools SNP 554295 554295 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold100 SAMTools SNP 554789 554789 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 556154 556154 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 556538 556538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 556555 556555 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.27%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold100 SAMTools SNP 557475 557475 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C110:99 scaffold100 SAMTools SNP 557763 557763 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold100 SAMTools SNP 560962 560962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.09%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold100 SAMTools SNP 563536 563536 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 564879 564879 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold100 SAMTools SNP 564888 564888 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold100 SAMTools SNP 566925 566925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 566996 566996 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold100 SAMTools SNP 567178 567178 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold100 SAMTools SNP 567691 567691 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.048%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C145:99 scaffold100 SAMTools SNP 567695 567695 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C167:99 scaffold100 SAMTools SNP 567904 567904 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 568689 568689 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold100 SAMTools SNP 568797 568797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 570327 570327 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold100 SAMTools SNP 570565 570565 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold100 SAMTools SNP 570802 570802 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C246:99 scaffold100 SAMTools SNP 571154 571154 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0:45 scaffold100 SAMTools SNP 571234 571234 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold100 SAMTools SNP 571563 571563 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold100 SAMTools SNP 571683 571683 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold100 SAMTools SNP 571706 571706 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.18%2C0.0056%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold100 SAMTools SNP 572413 572413 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold100 SAMTools SNP 572447 572447 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold100 SAMTools SNP 611072 611072 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold100 SAMTools SNP 611231 611231 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.45%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold100 SAMTools SNP 611243 611243 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C2.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold100 SAMTools SNP 611356 611356 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C13%2C29%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.64%2C1.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold100 SAMTools SNP 611749 611749 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.52%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C185:64 scaffold100 SAMTools SNP 611974 611974 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 615123 615123 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold100 SAMTools SNP 627607 627607 134 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C39%2C24%2C166%2C0%2C160:27 scaffold100 SAMTools SNP 627628 627628 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D160%3BPV4%3D2.6e-05%2C0.34%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold100 SAMTools SNP 627631 627631 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C0%2C20%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1.1e-06%2C0.057%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold100 SAMTools SNP 628083 628083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C18%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C0:67 scaffold100 SAMTools SNP 628098 628098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold100 SAMTools SNP 628230 628230 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold100 SAMTools SNP 628314 628314 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C33%2C6%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-13%2C4e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 628663 628663 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C15%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold100 SAMTools SNP 628982 628982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold100 SAMTools SNP 629017 629017 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0035%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold100 SAMTools SNP 629048 629048 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.27%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold100 SAMTools SNP 629102 629102 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-08%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 630337 630337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 630349 630349 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold100 SAMTools SNP 630378 630378 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold100 SAMTools SNP 630415 630415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold100 SAMTools SNP 630758 630758 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold100 SAMTools SNP 632187 632187 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold100 SAMTools SNP 632205 632205 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold100 SAMTools SNP 632302 632302 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.18%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold100 SAMTools SNP 632317 632317 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C0.23%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C127:63 scaffold100 SAMTools SNP 635132 635132 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 635177 635177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C46%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold100 SAMTools SNP 635481 635481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 639275 639275 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 639326 639326 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.4%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C45:48 scaffold100 SAMTools SNP 639781 639781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C54%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold100 SAMTools SNP 639823 639823 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 640137 640137 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C143:51 scaffold100 SAMTools SNP 640146 640146 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.00099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold100 SAMTools SNP 640164 640164 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 640335 640335 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold100 SAMTools SNP 640906 640906 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D9.1e-06%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold100 SAMTools SNP 641129 641129 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold100 SAMTools SNP 641213 641213 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C6%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.012%2C0.092%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold100 SAMTools SNP 641869 641869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold100 SAMTools SNP 646050 646050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold100 SAMTools SNP 646981 646981 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 647056 647056 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 648119 648119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 648185 648185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 651672 651672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 652789 652789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C46%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 652825 652825 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C2%2C14%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.27%2C7.9e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold100 SAMTools SNP 653469 653469 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.8e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold100 SAMTools SNP 653499 653499 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C166:64 scaffold100 SAMTools SNP 656035 656035 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C183%2C113%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C5.2e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 660035 660035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C228%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 660044 660044 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C59%2C23%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D2.6e-09%2C6.9e-13%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold100 SAMTools SNP 660072 660072 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D0.42%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C65:68 scaffold100 SAMTools SNP 660083 660083 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold100 SAMTools SNP 667366 667366 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold100 SAMTools SNP 667387 667387 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold100 SAMTools SNP 669029 669029 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold100 SAMTools SNP 669090 669090 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold100 SAMTools SNP 669100 669100 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C42%2C0:81 scaffold100 SAMTools SNP 670596 670596 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold100 SAMTools SNP 670762 670762 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C42%2C0:81 scaffold100 SAMTools SNP 671258 671258 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C42%2C0:81 scaffold100 SAMTools SNP 676697 676697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 677060 677060 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C17%2C47%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 677358 677358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 678862 678862 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 678874 678874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 679259 679259 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C38%2C14%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.56%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 681007 681007 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold100 SAMTools SNP 681232 681232 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C15%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C0.053%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 681240 681240 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C18%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-05%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 681320 681320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C30%2C65%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.7e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 683104 683104 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.44%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold100 SAMTools SNP 683194 683194 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold100 SAMTools SNP 683203 683203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 683682 683682 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C9%2C21%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold100 SAMTools SNP 684227 684227 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.7e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold100 SAMTools SNP 684476 684476 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.34%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold100 SAMTools SNP 684786 684786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C9%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 686170 686170 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold100 SAMTools SNP 686184 686184 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 686442 686442 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold100 SAMTools SNP 687146 687146 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C0%2C10%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.57%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold100 SAMTools SNP 687149 687149 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 687809 687809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1.6e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 687893 687893 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold100 SAMTools SNP 687971 687971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C24%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688149 688149 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688227 688227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C18%2C73%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 688639 688639 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold100 SAMTools SNP 688916 688916 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.015%2C0.044%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C200:99 scaffold100 SAMTools SNP 688997 688997 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 689141 689141 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C13%2C54%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 689189 689189 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C59%2C6%2C31%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.8%2C1e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold100 SAMTools SNP 689343 689343 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C2.6e-16%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold100 SAMTools SNP 689749 689749 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.0036%2C0.044%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold100 SAMTools SNP 689894 689894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold100 SAMTools SNP 690214 690214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 690292 690292 84.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold100 SAMTools SNP 690379 690379 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.25%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold100 SAMTools SNP 691408 691408 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C241:99 scaffold100 SAMTools SNP 692626 692626 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C1%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.46%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold100 SAMTools SNP 692629 692629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 692668 692668 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold100 SAMTools SNP 693497 693497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 694239 694239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold100 SAMTools SNP 696694 696694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold100 SAMTools SNP 697071 697071 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold100 SAMTools SNP 697140 697140 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold100 SAMTools SNP 697334 697334 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold100 SAMTools SNP 697391 697391 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold100 SAMTools SNP 697460 697460 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C0.085%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold100 SAMTools SNP 697493 697493 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold100 SAMTools SNP 697502 697502 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C146:99 scaffold100 SAMTools SNP 697645 697645 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.45%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C146:99 scaffold100 SAMTools SNP 697735 697735 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.64%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold100 SAMTools SNP 697759 697759 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.46%2C0.0023%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold100 SAMTools SNP 697893 697893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C36%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00068%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold100 SAMTools SNP 698275 698275 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C9%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0077%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold100 SAMTools SNP 698292 698292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00045%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 699048 699048 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 699182 699182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 700259 700259 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 701868 701868 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.32%2C0.0056%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold100 SAMTools SNP 701877 701877 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C0%2C13%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.014%2C1.7e-05%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold100 SAMTools SNP 702322 702322 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold100 SAMTools SNP 702328 702328 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold100 SAMTools SNP 703854 703854 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold100 SAMTools SNP 704145 704145 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 704373 704373 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold100 SAMTools SNP 704720 704720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 704738 704738 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold100 SAMTools SNP 704828 704828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold100 SAMTools SNP 704834 704834 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold100 SAMTools SNP 706036 706036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold100 SAMTools SNP 707167 707167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C33%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold100 SAMTools SNP 707656 707656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C27%2C39%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 707782 707782 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C8%2C31%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.81%2C3.4e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold100 SAMTools SNP 708068 708068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold100 SAMTools SNP 708102 708102 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 708424 708424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C2%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.19%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold100 SAMTools SNP 709133 709133 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C255%2C0:99 scaffold100 SAMTools SNP 709812 709812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold100 SAMTools SNP 710250 710250 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.52%2C0.25%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C219:99 scaffold100 SAMTools SNP 710722 710722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 710911 710911 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C9%2C89%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711320 711320 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C31%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711537 711537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 711808 711808 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold100 SAMTools SNP 712323 712323 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.48%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C249:99 scaffold100 SAMTools SNP 714298 714298 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.1%2C2.3e-05%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold100 SAMTools SNP 714681 714681 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold100 SAMTools SNP 717906 717906 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold100 SAMTools SNP 718150 718150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 718707 718707 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C2%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0023%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold100 SAMTools SNP 720852 720852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C25%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold100 SAMTools SNP 722383 722383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 722497 722497 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C84%2C0:99 scaffold100 SAMTools SNP 723133 723133 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold100 SAMTools SNP 723141 723141 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C143:99 scaffold100 SAMTools SNP 727331 727331 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold100 SAMTools SNP 727802 727802 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold100 SAMTools SNP 729341 729341 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold100 SAMTools SNP 759700 759700 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold100 SAMTools SNP 776488 776488 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold100 SAMTools SNP 780771 780771 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold100 SAMTools SNP 795095 795095 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D998%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C550%2C350%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D4.7e-173%2C4.2e-143%2C1%2C3.2e-157;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold100 SAMTools SNP 795098 795098 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D849%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C553%2C240%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D5.6e-152%2C1.4e-192%2C1%2C7.8e-146;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold100 SAMTools SNP 795154 795154 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D744%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C422%2C71%2C185%3BMQ%3D50%3BFQ%3D201%3BPV4%3D3.5e-06%2C3.1e-227%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold100 SAMTools SNP 795261 795261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C81%2C64%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-05%2C1%2C1%2C8.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 795306 795306 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C112%2C97%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 797349 797349 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4356%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2148%2C131%2C1933%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 797373 797373 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4366%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1919%2C158%2C1192%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C5.9e-101%2C1%2C4.7e-74;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold100 SAMTools SNP 803557 803557 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 816781 816781 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C45%2C0:87 scaffold100 SAMTools SNP 1009059 1009059 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold100 SAMTools SNP 1047765 1047765 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold100 SAMTools SNP 1048274 1048274 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1048295 1048295 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold100 SAMTools SNP 1048378 1048378 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold100 SAMTools SNP 1048957 1048957 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold100 SAMTools SNP 1049273 1049273 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold100 SAMTools SNP 1050074 1050074 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold100 SAMTools SNP 1075878 1075878 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 1076325 1076325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold100 SAMTools SNP 1101416 1101416 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold100 SAMTools SNP 1106680 1106680 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C33%2C0:61 scaffold100 SAMTools SNP 1106737 1106737 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold100 SAMTools SNP 1106928 1106928 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1107075 1107075 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1108414 1108414 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold100 SAMTools SNP 1109476 1109476 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold100 SAMTools SNP 1109491 1109491 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold100 SAMTools SNP 1110314 1110314 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold100 SAMTools SNP 1110317 1110317 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C94:40 scaffold100 SAMTools SNP 1110600 1110600 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold100 SAMTools SNP 1110641 1110641 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold100 SAMTools SNP 1110854 1110854 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1110867 1110867 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1111503 1111503 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1112493 1112493 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold100 SAMTools SNP 1112562 1112562 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold100 SAMTools SNP 1112586 1112586 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold100 SAMTools SNP 1112777 1112777 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold100 SAMTools SNP 1115461 1115461 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold100 SAMTools SNP 1115602 1115602 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold100 SAMTools SNP 1115632 1115632 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold100 SAMTools SNP 1118218 1118218 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold100 SAMTools SNP 1118220 1118220 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 25739 25739 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 25760 25760 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 108316 108316 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1000 SAMTools SNP 122970 122970 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C18%2C0:33 scaffold1000 SAMTools SNP 134404 134404 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C57%2C0:99 scaffold1000 SAMTools SNP 134714 134714 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 134755 134755 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1000 SAMTools SNP 134759 134759 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1000 SAMTools SNP 135421 135421 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 136850 136850 62.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold1000 SAMTools SNP 136859 136859 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1000 SAMTools SNP 136889 136889 88.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold1000 SAMTools SNP 136982 136982 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1000 SAMTools SNP 139063 139063 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 139087 139087 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 139135 139135 56.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold1000 SAMTools SNP 140527 140527 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1000 SAMTools SNP 140565 140565 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 146256 146256 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 148802 148802 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 148810 148810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 149150 149150 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C17%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1000 SAMTools SNP 149624 149624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C70%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1000 SAMTools SNP 150527 150527 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.18%2C1%2C1%2C1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1000 SAMTools SNP 150908 150908 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C30%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1000 SAMTools SNP 155015 155015 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C11%3BMQ%3D36%3BFQ%3D7.8%3BPV4%3D1%2C0.0076%2C0.0037%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C227:34 scaffold1000 SAMTools SNP 156129 156129 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C11%2C2%3BMQ%3D43%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C137:99 scaffold1000 SAMTools SNP 156130 156130 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C2%3BMQ%3D41%3BFQ%3D30%3BPV4%3D0.53%2C1%2C0.08%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C174:60 scaffold1000 SAMTools SNP 156633 156633 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 156660 156660 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1000 SAMTools SNP 159662 159662 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 159674 159674 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D40%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C188:44 scaffold1000 SAMTools SNP 159829 159829 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C0%2C31%2C0%3BMQ%3D48%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C254:99 scaffold1000 SAMTools SNP 159865 159865 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C262%2C1%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 171043 171043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C103%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 173009 173009 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 173253 173253 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1000 SAMTools SNP 178761 178761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C50%2C15%2C19%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.24%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 179109 179109 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C52%2C0%2C19%3BMQ%3D49%3BFQ%3D105%3BPV4%3D0.0026%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1000 SAMTools SNP 179463 179463 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C60%2C84%2C9%3BMQ%3D35%3BFQ%3D132%3BPV4%3D2.5e-11%2C0.24%2C5.1e-24%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1000 SAMTools SNP 183761 183761 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D640%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D422%2C83%2C41%2C94%3BMQ%3D46%3BFQ%3D101%3BPV4%3D1.4e-31%2C1.7e-102%2C2.8e-129%2C2.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1000 SAMTools SNP 187822 187822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C315%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 187907 187907 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C52%2C38%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 188670 188670 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C160%2C317%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.34%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190457 190457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D657%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D306%2C91%2C172%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.47%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 190726 190726 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D700%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190756 190756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 190804 190804 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D543%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C330%2C0%2C190%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 191101 191101 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1000 SAMTools SNP 193014 193014 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C27%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C245:99 scaffold1000 SAMTools SNP 193107 193107 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 193130 193130 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 193502 193502 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C105%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.00041%2C0.041%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C73:76 scaffold1000 SAMTools SNP 193506 193506 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C34%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.29%2C0.057%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1000 SAMTools SNP 193507 193507 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.55%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1000 SAMTools SNP 194853 194853 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1000 SAMTools SNP 194859 194859 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1000 SAMTools SNP 194890 194890 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C159:62 scaffold1000 SAMTools SNP 194894 194894 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.25%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C137:55 scaffold1000 SAMTools SNP 202723 202723 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 205691 205691 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 205715 205715 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 205976 205976 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 206168 206168 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.018%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C201:99 scaffold1000 SAMTools SNP 206349 206349 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1000 SAMTools SNP 206370 206370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1000 SAMTools SNP 206698 206698 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.2e-32%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1000 SAMTools SNP 206797 206797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 206954 206954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1000 SAMTools SNP 207260 207260 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C157%2C0:99 scaffold1000 SAMTools SNP 207657 207657 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 208203 208203 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D35%3BPV4%3D3.4e-05%2C5.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1000 SAMTools SNP 208331 208331 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.0004%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C236:93 scaffold1000 SAMTools SNP 208504 208504 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C76%2C21%2C23%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0024%2C3.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1000 SAMTools SNP 208586 208586 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 208831 208831 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1000 SAMTools SNP 210098 210098 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1000 SAMTools SNP 211311 211311 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.16%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1000 SAMTools SNP 212782 212782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D48%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1000 SAMTools SNP 212815 212815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1000 SAMTools SNP 213831 213831 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C12%2C1%3BMQ%3D49%3BFQ%3D156%3BPV4%3D0.41%2C0.45%2C0.053%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1000 SAMTools SNP 214381 214381 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1000 SAMTools SNP 214610 214610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1000 SAMTools SNP 214628 214628 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 214860 214860 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C140:99 scaffold1000 SAMTools SNP 214875 214875 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.18%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C145:99 scaffold1000 SAMTools SNP 214929 214929 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1000 SAMTools SNP 216423 216423 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1000 SAMTools SNP 216438 216438 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1000 SAMTools SNP 216495 216495 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1000 SAMTools SNP 216498 216498 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1000 SAMTools SNP 216916 216916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1000 SAMTools SNP 217620 217620 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.45%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1000 SAMTools SNP 217622 217622 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1000 SAMTools SNP 217640 217640 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1000 SAMTools SNP 217667 217667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 217679 217679 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.099%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1000 SAMTools SNP 217856 217856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C24%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.43%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1000 SAMTools SNP 217937 217937 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold1000 SAMTools SNP 218193 218193 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1000 SAMTools SNP 218214 218214 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1000 SAMTools SNP 218244 218244 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1000 SAMTools SNP 218292 218292 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.11%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1000 SAMTools SNP 218295 218295 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.11%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1000 SAMTools SNP 218653 218653 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1000 SAMTools SNP 218680 218680 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1000 SAMTools SNP 218787 218787 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 218798 218798 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1000 SAMTools SNP 219190 219190 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 219223 219223 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1000 SAMTools SNP 220522 220522 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1000 SAMTools SNP 221390 221390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C37%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 221401 221401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C5%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1000 SAMTools SNP 221554 221554 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C175%2C0:99 scaffold1000 SAMTools SNP 221824 221824 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 222245 222245 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1000 SAMTools SNP 222328 222328 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1000 SAMTools SNP 222330 222330 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1000 SAMTools SNP 222343 222343 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 224434 224434 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1000 SAMTools SNP 224621 224621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1000 SAMTools SNP 226402 226402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1000 SAMTools SNP 226492 226492 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.48%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1000 SAMTools SNP 226669 226669 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1000 SAMTools SNP 230387 230387 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold1000 SAMTools SNP 235714 235714 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1000 SAMTools SNP 235740 235740 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D28%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C123%2C0:99 scaffold1000 SAMTools SNP 236446 236446 6.97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C57%2C0:50 scaffold1000 SAMTools SNP 236899 236899 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1000 SAMTools SNP 237556 237556 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1000 SAMTools SNP 237598 237598 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D40%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1000 SAMTools SNP 237856 237856 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C45%2C0:87 scaffold1000 SAMTools SNP 238792 238792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 240294 240294 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1000 SAMTools SNP 240498 240498 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1000 SAMTools SNP 240531 240531 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1000 SAMTools SNP 240827 240827 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.051%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C198:54 scaffold1000 SAMTools SNP 240842 240842 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1000 SAMTools SNP 240849 240849 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold1000 SAMTools SNP 242086 242086 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1000 SAMTools SNP 242511 242511 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.27%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C93:96 scaffold1000 SAMTools SNP 243081 243081 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.037%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C201:96 scaffold1000 SAMTools SNP 243090 243090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1000 SAMTools SNP 244902 244902 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1000 SAMTools SNP 246683 246683 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1000 SAMTools SNP 246684 246684 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1000 SAMTools SNP 249954 249954 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 251399 251399 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C11%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C5.9e-37%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1000 SAMTools SNP 252631 252631 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1000 SAMTools SNP 252652 252652 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1000 SAMTools SNP 252819 252819 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1000 SAMTools SNP 252868 252868 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 256154 256154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1476%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D615%2C4%2C850%2C7%3BMQ%3D49%3BFQ%3D209%3BPV4%3D0.77%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1000 SAMTools SNP 257371 257371 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1000 SAMTools SNP 259935 259935 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C4%2C76%2C4%3BMQ%3D45%3BFQ%3D213%3BPV4%3D0.72%2C1%2C0.026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1000 SAMTools SNP 265452 265452 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2271%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D402%2C860%2C374%2C620%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0043%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 266232 266232 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2137%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D708%2C852%2C0%2C571%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D2.9e-122%2C1.3e-177%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1000 SAMTools SNP 270154 270154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1000 SAMTools SNP 270176 270176 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 272577 272577 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C35%2C25%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.45%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 273604 273604 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 274432 274432 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1000 SAMTools SNP 279747 279747 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 279932 279932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C25%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1000 SAMTools SNP 280156 280156 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C255%2C0:99 scaffold1000 SAMTools SNP 280552 280552 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C107%2C34%2C80%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.79%2C1e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1000 SAMTools SNP 280595 280595 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C56%2C10%2C36%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.23%2C5.9e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1000 SAMTools SNP 280897 280897 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.35%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1000 SAMTools SNP 288958 288958 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1000 SAMTools SNP 288960 288960 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1000 SAMTools SNP 289013 289013 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1000 SAMTools SNP 290276 290276 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 292993 292993 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1000 SAMTools SNP 293732 293732 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1000 SAMTools SNP 293813 293813 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold1000 SAMTools SNP 295498 295498 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1000 SAMTools SNP 295555 295555 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1000 SAMTools SNP 295961 295961 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 296222 296222 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1000 SAMTools SNP 296562 296562 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1000 SAMTools SNP 296579 296579 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 296713 296713 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 297394 297394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 297668 297668 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C21%2C0:39 scaffold1000 SAMTools SNP 297804 297804 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1000 SAMTools SNP 298322 298322 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1000 SAMTools SNP 298343 298343 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 298359 298359 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1000 SAMTools SNP 298817 298817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 298856 298856 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1000 SAMTools SNP 299034 299034 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1000 SAMTools SNP 299313 299313 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1000 SAMTools SNP 299505 299505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 299520 299520 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1000 SAMTools SNP 299589 299589 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.092%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1000 SAMTools SNP 300118 300118 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1000 SAMTools SNP 300202 300202 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C127:62 scaffold1000 SAMTools SNP 300246 300246 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1000 SAMTools SNP 300579 300579 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 300870 300870 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 302154 302154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 302172 302172 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 305910 305910 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1000 SAMTools SNP 306717 306717 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C27%2C24%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 306729 306729 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1000 SAMTools SNP 306969 306969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C69%2C14%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 307181 307181 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C22%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1000 SAMTools SNP 307189 307189 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C4%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.68%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1000 SAMTools SNP 307270 307270 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 307629 307629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1000 SAMTools SNP 308179 308179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 313469 313469 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold1000 SAMTools SNP 313679 313679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1000 SAMTools SNP 313799 313799 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1000 SAMTools SNP 316251 316251 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C39%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold1000 SAMTools SNP 316666 316666 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00054%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1000 SAMTools SNP 318100 318100 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7.3e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C202:30 scaffold1000 SAMTools SNP 318431 318431 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1000 SAMTools SNP 318833 318833 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C13%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.45%2C2e-19%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1000 SAMTools SNP 318869 318869 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.19%2C0.07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1000 SAMTools SNP 329704 329704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C16%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1000 SAMTools SNP 338418 338418 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1000 SAMTools SNP 339738 339738 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1000 SAMTools SNP 339747 339747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1000 SAMTools SNP 340512 340512 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 340521 340521 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1000 SAMTools SNP 340548 340548 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 340552 340552 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1000 SAMTools SNP 342497 342497 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 342522 342522 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1000 SAMTools SNP 343233 343233 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1000 SAMTools SNP 343287 343287 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0114%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1000 SAMTools SNP 343327 343327 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1000 SAMTools SNP 344200 344200 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1000 SAMTools SNP 344214 344214 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1000 SAMTools SNP 344233 344233 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1000 SAMTools SNP 345489 345489 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 345492 345492 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1000 SAMTools SNP 345738 345738 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1000 SAMTools SNP 345795 345795 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1000 SAMTools SNP 346013 346013 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 3849 3849 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 3922 3922 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1001 SAMTools SNP 4322 4322 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1001 SAMTools SNP 6092 6092 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1001 SAMTools SNP 6094 6094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1001 SAMTools SNP 6618 6618 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.029%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1001 SAMTools SNP 6722 6722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1001 SAMTools SNP 7121 7121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1001 SAMTools SNP 7867 7867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C39%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1001 SAMTools SNP 7892 7892 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1001 SAMTools SNP 8062 8062 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 8084 8084 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 8385 8385 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8392 8392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8424 8424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8455 8455 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 8746 8746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1001 SAMTools SNP 8889 8889 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.55%2C0.00055%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1001 SAMTools SNP 11066 11066 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1001 SAMTools SNP 11328 11328 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 14988 14988 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C68:52 scaffold1001 SAMTools SNP 15203 15203 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1001 SAMTools SNP 34820 34820 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1001 SAMTools SNP 46176 46176 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1001 SAMTools SNP 46206 46206 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1001 SAMTools SNP 46645 46645 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D41%3BFQ%3D53.8%3BPV4%3D1%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C82:84 scaffold1001 SAMTools SNP 46847 46847 52.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1001 SAMTools SNP 46945 46945 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 47113 47113 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1001 SAMTools SNP 47140 47140 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1001 SAMTools SNP 47612 47612 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold1001 SAMTools SNP 47988 47988 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 48004 48004 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 48120 48120 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C5e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1001 SAMTools SNP 48480 48480 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1001 SAMTools SNP 48666 48666 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 48702 48702 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1001 SAMTools SNP 48949 48949 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1001 SAMTools SNP 49393 49393 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 49708 49708 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1001 SAMTools SNP 50179 50179 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1001 SAMTools SNP 50825 50825 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C3.1e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold1001 SAMTools SNP 50865 50865 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1001 SAMTools SNP 54791 54791 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1001 SAMTools SNP 54896 54896 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1001 SAMTools SNP 57505 57505 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1001 SAMTools SNP 57557 57557 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C34:37 scaffold1001 SAMTools SNP 58323 58323 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1001 SAMTools SNP 58476 58476 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1001 SAMTools SNP 58479 58479 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1001 SAMTools SNP 58484 58484 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.36%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C78:39 scaffold1001 SAMTools SNP 58880 58880 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D46%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C159:82 scaffold1001 SAMTools SNP 59306 59306 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 59753 59753 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C64:64 scaffold1001 SAMTools SNP 59974 59974 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 60019 60019 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1001 SAMTools SNP 60075 60075 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 60080 60080 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1001 SAMTools SNP 61175 61175 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C24:27 scaffold1001 SAMTools SNP 61752 61752 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1001 SAMTools SNP 62044 62044 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1001 SAMTools SNP 62216 62216 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 62232 62232 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold1001 SAMTools SNP 62902 62902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C10%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1001 SAMTools SNP 62975 62975 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1001 SAMTools SNP 63032 63032 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 63068 63068 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1001 SAMTools SNP 63732 63732 59.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1001 SAMTools SNP 63861 63861 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1001 SAMTools SNP 64209 64209 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1001 SAMTools SNP 64583 64583 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1001 SAMTools SNP 72666 72666 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1001 SAMTools SNP 72707 72707 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1001 SAMTools SNP 72732 72732 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0128%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C240:34 scaffold1001 SAMTools SNP 73909 73909 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.036%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C128:30 scaffold1001 SAMTools SNP 73947 73947 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1001 SAMTools SNP 75315 75315 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1001 SAMTools SNP 78000 78000 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1001 SAMTools SNP 78614 78614 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1001 SAMTools SNP 79365 79365 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1001 SAMTools SNP 79415 79415 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1001 SAMTools SNP 80115 80115 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 81171 81171 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1001 SAMTools SNP 83421 83421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 83982 83982 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1001 SAMTools SNP 89981 89981 13.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.00098%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C5%2C0:8 scaffold1001 SAMTools SNP 111977 111977 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1001 SAMTools SNP 116042 116042 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1001 SAMTools SNP 116137 116137 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 116158 116158 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 116863 116863 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 118846 118846 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 118862 118862 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1001 SAMTools SNP 118967 118967 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1001 SAMTools SNP 121325 121325 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1001 SAMTools SNP 121821 121821 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold1001 SAMTools SNP 121829 121829 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1001 SAMTools SNP 121987 121987 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1001 SAMTools SNP 122068 122068 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1001 SAMTools SNP 122356 122356 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D25%3BFQ%3D-29%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C2%2C0:5 scaffold1001 SAMTools SNP 122818 122818 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D-3.09%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C27:30 scaffold1001 SAMTools SNP 123228 123228 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 127503 127503 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 127650 127650 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1001 SAMTools SNP 127665 127665 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1001 SAMTools SNP 127682 127682 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1001 SAMTools SNP 128270 128270 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1001 SAMTools SNP 128320 128320 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.17%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1001 SAMTools SNP 128358 128358 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1001 SAMTools SNP 132325 132325 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 132393 132393 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 133959 133959 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1001 SAMTools SNP 134260 134260 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1001 SAMTools SNP 134567 134567 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1001 SAMTools SNP 134600 134600 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C231:99 scaffold1001 SAMTools SNP 135014 135014 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.19%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold1001 SAMTools SNP 135057 135057 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1001 SAMTools SNP 146467 146467 22.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1001 SAMTools SNP 146943 146943 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1001 SAMTools SNP 148389 148389 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1001 SAMTools SNP 151016 151016 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1002 SAMTools SNP 2005 2005 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1002 SAMTools SNP 2026 2026 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1002 SAMTools SNP 2052 2052 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 11379 11379 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold1002 SAMTools SNP 11547 11547 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C84:87 scaffold1002 SAMTools SNP 12386 12386 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C48%2C0:93 scaffold1002 SAMTools SNP 13559 13559 12.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1002 SAMTools SNP 14070 14070 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold1002 SAMTools SNP 15696 15696 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 24839 24839 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1002 SAMTools SNP 24878 24878 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 29684 29684 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1002 SAMTools SNP 29776 29776 51.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1002 SAMTools SNP 30695 30695 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1002 SAMTools SNP 32000 32000 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1002 SAMTools SNP 32167 32167 59.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1002 SAMTools SNP 32300 32300 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1002 SAMTools SNP 32317 32317 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1002 SAMTools SNP 33719 33719 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1002 SAMTools SNP 33952 33952 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.27%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C248:99 scaffold1002 SAMTools SNP 43643 43643 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1004 SAMTools SNP 23771 23771 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 24387 24387 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 24780 24780 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 27533 27533 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1004 SAMTools SNP 27563 27563 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1004 SAMTools SNP 28911 28911 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1004 SAMTools SNP 28929 28929 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1004 SAMTools SNP 29529 29529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 51702 51702 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 56753 56753 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1004 SAMTools SNP 56783 56783 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1004 SAMTools SNP 57504 57504 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1004 SAMTools SNP 57615 57615 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C226:99 scaffold1004 SAMTools SNP 57627 57627 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 59527 59527 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D0.43%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C120:99 scaffold1004 SAMTools SNP 59530 59530 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C175:79 scaffold1004 SAMTools SNP 59536 59536 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.37%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C158:91 scaffold1004 SAMTools SNP 59574 59574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1004 SAMTools SNP 59575 59575 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1004 SAMTools SNP 64873 64873 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1004 SAMTools SNP 66899 66899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87000 87000 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87013 87013 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 87022 87022 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 87504 87504 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1004 SAMTools SNP 87510 87510 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1004 SAMTools SNP 87803 87803 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 91136 91136 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 93548 93548 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1004 SAMTools SNP 97580 97580 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1004 SAMTools SNP 107489 107489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1004 SAMTools SNP 107659 107659 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 116222 116222 28.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1004 SAMTools SNP 116315 116315 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C33%2C0:63 scaffold1004 SAMTools SNP 130527 130527 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1004 SAMTools SNP 130672 130672 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1004 SAMTools SNP 131558 131558 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1004 SAMTools SNP 131566 131566 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 131752 131752 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 131846 131846 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 146190 146190 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 146387 146387 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1004 SAMTools SNP 146433 146433 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1004 SAMTools SNP 147174 147174 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 147258 147258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 203241 203241 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1004 SAMTools SNP 205213 205213 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C48%2C0:93 scaffold1004 SAMTools SNP 208780 208780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1004 SAMTools SNP 208880 208880 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 208901 208901 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 211499 211499 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C40%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212042 212042 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212847 212847 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C5%2C7%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0098%2C0.021%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C233:99 scaffold1004 SAMTools SNP 212862 212862 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 212864 212864 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.19%2C2.7e-05%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1004 SAMTools SNP 216831 216831 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00019%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C143:49 scaffold1004 SAMTools SNP 216961 216961 92.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1004 SAMTools SNP 267426 267426 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 267733 267733 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 278811 278811 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1004 SAMTools SNP 279438 279438 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1004 SAMTools SNP 288563 288563 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C82:85 scaffold1004 SAMTools SNP 288816 288816 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1004 SAMTools SNP 289117 289117 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1004 SAMTools SNP 289626 289626 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold1004 SAMTools SNP 289672 289672 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.1e-15%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C231:41 scaffold1004 SAMTools SNP 290376 290376 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.048%2C0.084%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C187:99 scaffold1004 SAMTools SNP 290377 290377 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.048%2C0.0021%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C187:79 scaffold1004 SAMTools SNP 291691 291691 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00018%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C110:48 scaffold1004 SAMTools SNP 291808 291808 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold1004 SAMTools SNP 292270 292270 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1004 SAMTools SNP 292295 292295 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1004 SAMTools SNP 292371 292371 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.37%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C158:39 scaffold1004 SAMTools SNP 292532 292532 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1004 SAMTools SNP 293216 293216 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 298527 298527 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1004 SAMTools SNP 302659 302659 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 303181 303181 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 303245 303245 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 303250 303250 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1004 SAMTools SNP 304832 304832 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1004 SAMTools SNP 304834 304834 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 304843 304843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 307019 307019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1004 SAMTools SNP 307070 307070 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1004 SAMTools SNP 307901 307901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1004 SAMTools SNP 307964 307964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1004 SAMTools SNP 308006 308006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 310915 310915 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 311948 311948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 312512 312512 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 314251 314251 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold1004 SAMTools SNP 314263 314263 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 314389 314389 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1004 SAMTools SNP 314397 314397 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1004 SAMTools SNP 314880 314880 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.023%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1004 SAMTools SNP 314904 314904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1004 SAMTools SNP 316266 316266 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.11%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1004 SAMTools SNP 317823 317823 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 317858 317858 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C227:28 scaffold1004 SAMTools SNP 317951 317951 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C0.34%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold1004 SAMTools SNP 318421 318421 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C6%3BMQ%3D44%3BFQ%3D157%3BPV4%3D0.0046%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1004 SAMTools SNP 318788 318788 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C44%2C43%2C5%3BMQ%3D42%3BFQ%3D169%3BPV4%3D4.4e-06%2C1%2C0.12%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1004 SAMTools SNP 319496 319496 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C32%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1004 SAMTools SNP 319538 319538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C30%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1004 SAMTools SNP 320154 320154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 320175 320175 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold1004 SAMTools SNP 320253 320253 120 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C102%2C185%2C0%2C176:33 scaffold1004 SAMTools SNP 320640 320640 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C36%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 322129 322129 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C15%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.43%2C0.23%2C0.068%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 403082 403082 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 403976 403976 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 407802 407802 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C33%2C0:63 scaffold1004 SAMTools SNP 420446 420446 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 421416 421416 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1004 SAMTools SNP 421449 421449 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 422035 422035 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 422039 422039 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 423153 423153 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 423771 423771 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.25%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C224:99 scaffold1004 SAMTools SNP 424085 424085 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C205:99 scaffold1004 SAMTools SNP 424091 424091 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C102:99 scaffold1004 SAMTools SNP 430693 430693 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C31%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00047%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1004 SAMTools SNP 430874 430874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 430929 430929 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1004 SAMTools SNP 430953 430953 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1004 SAMTools SNP 431630 431630 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1004 SAMTools SNP 431684 431684 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 432264 432264 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1004 SAMTools SNP 432749 432749 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold1004 SAMTools SNP 432801 432801 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1004 SAMTools SNP 433123 433123 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1004 SAMTools SNP 433124 433124 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1004 SAMTools SNP 433141 433141 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.27%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1004 SAMTools SNP 433670 433670 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.16%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C236:99 scaffold1004 SAMTools SNP 438381 438381 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C6%3BMQ%3D36%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C181:99 scaffold1004 SAMTools SNP 438616 438616 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1004 SAMTools SNP 439542 439542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 440675 440675 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C16%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1004 SAMTools SNP 444928 444928 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.072%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C238:99 scaffold1004 SAMTools SNP 449782 449782 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.24%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C245:99 scaffold1004 SAMTools SNP 450872 450872 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1004 SAMTools SNP 451771 451771 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1004 SAMTools SNP 452960 452960 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1004 SAMTools SNP 455734 455734 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.067%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C196:50 scaffold1004 SAMTools SNP 455957 455957 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1004 SAMTools SNP 462107 462107 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1004 SAMTools SNP 463132 463132 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C93%2C0:99 scaffold1004 SAMTools SNP 463853 463853 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.38%2C9.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1004 SAMTools SNP 464420 464420 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C1%2C19%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.21%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C231:99 scaffold1004 SAMTools SNP 464440 464440 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C1%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 464880 464880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1004 SAMTools SNP 465103 465103 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C1%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.26%2C0.46%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1004 SAMTools SNP 465117 465117 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C11%2C26%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.41%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1004 SAMTools SNP 465137 465137 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.63%2C0.016%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1004 SAMTools SNP 465181 465181 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1004 SAMTools SNP 467358 467358 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.36%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1004 SAMTools SNP 467529 467529 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1004 SAMTools SNP 468316 468316 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 470503 470503 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C103:28 scaffold1004 SAMTools SNP 472416 472416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1004 SAMTools SNP 472437 472437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1004 SAMTools SNP 483125 483125 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C215:66 scaffold1004 SAMTools SNP 489240 489240 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1004 SAMTools SNP 489299 489299 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.45%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C234:75 scaffold1004 SAMTools SNP 489356 489356 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C245:99 scaffold1004 SAMTools SNP 489705 489705 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold1004 SAMTools SNP 489735 489735 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold1004 SAMTools SNP 491345 491345 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C8.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C102:65 scaffold1004 SAMTools SNP 494265 494265 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 495594 495594 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C42%2C0:81 scaffold1004 SAMTools SNP 496684 496684 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1004 SAMTools SNP 499418 499418 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.022%2C0.015%2C1%2C6.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold1004 SAMTools SNP 499546 499546 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1004 SAMTools SNP 499794 499794 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C5%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C0.055%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 499806 499806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1004 SAMTools SNP 502218 502218 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1004 SAMTools SNP 502257 502257 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1004 SAMTools SNP 504387 504387 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C15%3BMQ%3D49%3BFQ%3D193%3BPV4%3D1%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C248:99 scaffold1004 SAMTools SNP 504412 504412 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C226:47 scaffold1004 SAMTools SNP 504436 504436 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1004 SAMTools SNP 506402 506402 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 506429 506429 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1004 SAMTools SNP 506458 506458 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1004 SAMTools SNP 507231 507231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1004 SAMTools SNP 508161 508161 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C38:41 scaffold1004 SAMTools SNP 508450 508450 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1004 SAMTools SNP 511777 511777 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1004 SAMTools SNP 511781 511781 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1004 SAMTools SNP 511811 511811 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1004 SAMTools SNP 513971 513971 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C35:38 scaffold1004 SAMTools SNP 514006 514006 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1004 SAMTools SNP 514030 514030 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 514034 514034 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 515584 515584 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00014%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1004 SAMTools SNP 516313 516313 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1004 SAMTools SNP 516454 516454 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.5%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C103:99 scaffold1004 SAMTools SNP 517588 517588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 517631 517631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 517678 517678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1004 SAMTools SNP 517925 517925 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.52%2C0.017%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1004 SAMTools SNP 517929 517929 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.52%2C0.21%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1004 SAMTools SNP 518702 518702 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1004 SAMTools SNP 519005 519005 9.33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C7.6e-20%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C10%2C0:13 scaffold1004 SAMTools SNP 519790 519790 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold1004 SAMTools SNP 519934 519934 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold1004 SAMTools SNP 520266 520266 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C30:30 scaffold1004 SAMTools SNP 521128 521128 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C45%2C0:87 scaffold1004 SAMTools SNP 521233 521233 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C6.6e-16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1004 SAMTools SNP 521272 521272 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.31%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C140:99 scaffold1004 SAMTools SNP 521306 521306 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold1004 SAMTools SNP 521308 521308 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold1004 SAMTools SNP 521703 521703 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C197:99 scaffold1004 SAMTools SNP 521712 521712 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C202:99 scaffold1004 SAMTools SNP 522021 522021 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold1004 SAMTools SNP 522499 522499 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1004 SAMTools SNP 523124 523124 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.17%2C0.0033%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1004 SAMTools SNP 523920 523920 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1004 SAMTools SNP 524116 524116 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.58%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1004 SAMTools SNP 524118 524118 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1004 SAMTools SNP 524320 524320 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.27%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1004 SAMTools SNP 524529 524529 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C2%2C9%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.016%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1004 SAMTools SNP 524732 524732 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C3%3BMQ%3D49%3BFQ%3D35%3BPV4%3D1%2C0.47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1004 SAMTools SNP 524741 524741 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C3%2C3%3BMQ%3D49%3BFQ%3D52%3BPV4%3D0.33%2C0.0044%2C0.073%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1004 SAMTools SNP 525231 525231 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1004 SAMTools SNP 526212 526212 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C226:96 scaffold1004 SAMTools SNP 528623 528623 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C42%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.23%2C2.4e-27%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1004 SAMTools SNP 529751 529751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C34%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 531055 531055 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1004 SAMTools SNP 531070 531070 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1004 SAMTools SNP 531391 531391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 532384 532384 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1004 SAMTools SNP 532936 532936 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.7e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C146:79 scaffold1004 SAMTools SNP 532988 532988 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1004 SAMTools SNP 537703 537703 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.038%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C201:99 scaffold1004 SAMTools SNP 537715 537715 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C130:99 scaffold1004 SAMTools SNP 537792 537792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 538153 538153 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1004 SAMTools SNP 539186 539186 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1004 SAMTools SNP 539220 539220 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1004 SAMTools SNP 539232 539232 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold1004 SAMTools SNP 548544 548544 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1004 SAMTools SNP 552983 552983 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1004 SAMTools SNP 552999 552999 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1004 SAMTools SNP 554992 554992 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C167:36 scaffold1004 SAMTools SNP 555616 555616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1004 SAMTools SNP 555651 555651 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1004 SAMTools SNP 557548 557548 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C70%2C30%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D7.1e-18%2C3.3e-36%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1004 SAMTools SNP 557588 557588 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C2%2C16%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.084%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1004 SAMTools SNP 558849 558849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1004 SAMTools SNP 558953 558953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold1004 SAMTools SNP 559532 559532 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1004 SAMTools SNP 559555 559555 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1004 SAMTools SNP 560099 560099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 560126 560126 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.013%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 560144 560144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1004 SAMTools SNP 565353 565353 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C235:57 scaffold1004 SAMTools SNP 574883 574883 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C43%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 574922 574922 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1004 SAMTools SNP 575153 575153 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C57%2C21%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C7.9e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 576135 576135 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C211:70 scaffold1004 SAMTools SNP 577943 577943 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 584414 584414 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1004 SAMTools SNP 592870 592870 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1004 SAMTools SNP 593077 593077 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C68:70 scaffold1004 SAMTools SNP 593086 593086 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C85:85 scaffold1004 SAMTools SNP 593350 593350 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1004 SAMTools SNP 593428 593428 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1004 SAMTools SNP 594869 594869 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1004 SAMTools SNP 598494 598494 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 601727 601727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1004 SAMTools SNP 603121 603121 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1004 SAMTools SNP 603532 603532 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1004 SAMTools SNP 603615 603615 19.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1004 SAMTools SNP 604546 604546 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C234:69 scaffold1004 SAMTools SNP 605084 605084 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.45%2C0.0051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C243:69 scaffold1004 SAMTools SNP 606660 606660 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.66%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1004 SAMTools SNP 606717 606717 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C105:99 scaffold1004 SAMTools SNP 606923 606923 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 606942 606942 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 607709 607709 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1004 SAMTools SNP 612186 612186 80.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold1004 SAMTools SNP 612792 612792 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1004 SAMTools SNP 618898 618898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C506%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1004 SAMTools SNP 623006 623006 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D34%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1004 SAMTools SNP 623033 623033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D42%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1004 SAMTools SNP 623069 623069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D45%3BFQ%3D8.54%3BPV4%3D1%2C0.0045%2C0.34%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C35:38 scaffold1004 SAMTools SNP 623144 623144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1004 SAMTools SNP 623403 623403 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.46%2C3.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C230:52 scaffold1004 SAMTools SNP 624938 624938 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C39%2C0:75 scaffold1004 SAMTools SNP 624960 624960 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1004 SAMTools SNP 628137 628137 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold1004 SAMTools SNP 628536 628536 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D96.6%3BPV4%3D1%2C0.24%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C134:99 scaffold1004 SAMTools SNP 628922 628922 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.36%2C1.1e-34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1004 SAMTools SNP 629277 629277 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold1004 SAMTools SNP 629971 629971 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1004 SAMTools SNP 630464 630464 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1004 SAMTools SNP 631837 631837 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C23:26 scaffold1009 SAMTools SNP 1297 1297 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1415 1415 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 2274 2274 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 35703 35703 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1009 SAMTools SNP 44709 44709 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 44752 44752 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1009 SAMTools SNP 45193 45193 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.12%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1009 SAMTools SNP 63609 63609 11.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1009 SAMTools SNP 64028 64028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1009 SAMTools SNP 66176 66176 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 67186 67186 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D1%2C0.059%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold1009 SAMTools SNP 68796 68796 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C119:37 scaffold1009 SAMTools SNP 75534 75534 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1009 SAMTools SNP 79069 79069 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.7e-20%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C239:53 scaffold1009 SAMTools SNP 79213 79213 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold1009 SAMTools SNP 79231 79231 22.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold1009 SAMTools SNP 97662 97662 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1009 SAMTools SNP 98095 98095 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 109209 109209 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1009 SAMTools SNP 113913 113913 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 114277 114277 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 115134 115134 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1009 SAMTools SNP 115155 115155 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 115774 115774 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 115780 115780 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1009 SAMTools SNP 167829 167829 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1009 SAMTools SNP 191706 191706 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1009 SAMTools SNP 244759 244759 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 253050 253050 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D43%3BFQ%3D32.8%3BPV4%3D0.22%2C9.8e-11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C73:63 scaffold1009 SAMTools SNP 253256 253256 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1009 SAMTools SNP 275522 275522 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1009 SAMTools SNP 297047 297047 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 302084 302084 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 302090 302090 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 302901 302901 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 303426 303426 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 334118 334118 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 334352 334352 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1009 SAMTools SNP 334372 334372 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1009 SAMTools SNP 334901 334901 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 335767 335767 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1009 SAMTools SNP 335821 335821 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1009 SAMTools SNP 335872 335872 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 336296 336296 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.06%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1009 SAMTools SNP 336309 336309 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1009 SAMTools SNP 336365 336365 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 336500 336500 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.079%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1009 SAMTools SNP 336932 336932 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0039%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1009 SAMTools SNP 343282 343282 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1009 SAMTools SNP 344674 344674 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1009 SAMTools SNP 344691 344691 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 344726 344726 35.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1009 SAMTools SNP 345709 345709 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1009 SAMTools SNP 345737 345737 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.11%2C5.6e-08%2C1%2C6.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C160:69 scaffold1009 SAMTools SNP 383417 383417 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 385816 385816 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 385850 385850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 386755 386755 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1009 SAMTools SNP 386795 386795 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 387267 387267 12.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1009 SAMTools SNP 389750 389750 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold1009 SAMTools SNP 390016 390016 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1009 SAMTools SNP 392565 392565 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 392717 392717 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 393466 393466 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 410298 410298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 414657 414657 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C2%2C8%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1009 SAMTools SNP 414660 414660 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 414959 414959 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1009 SAMTools SNP 416529 416529 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold1009 SAMTools SNP 417079 417079 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1009 SAMTools SNP 419601 419601 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C241:99 scaffold1009 SAMTools SNP 419613 419613 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 431103 431103 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 450183 450183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 450208 450208 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 466480 466480 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.3e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C63:66 scaffold1009 SAMTools SNP 467053 467053 42.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1009 SAMTools SNP 467842 467842 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C45%2C0:87 scaffold1009 SAMTools SNP 467875 467875 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C36%2C0:69 scaffold1009 SAMTools SNP 468075 468075 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1009 SAMTools SNP 468433 468433 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1009 SAMTools SNP 468562 468562 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1009 SAMTools SNP 468646 468646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C35%2C46%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1.7e-63%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 468674 468674 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1009 SAMTools SNP 468958 468958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C6.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469009 469009 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C38%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C2.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1009 SAMTools SNP 469270 469270 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1009 SAMTools SNP 469299 469299 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C84%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.031%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469562 469562 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C54%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469718 469718 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C26%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 469742 469742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C13%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 490799 490799 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C219:99 scaffold1009 SAMTools SNP 491643 491643 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C195:99 scaffold1009 SAMTools SNP 491846 491846 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1009 SAMTools SNP 492812 492812 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C38:41 scaffold1009 SAMTools SNP 493254 493254 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C144:99 scaffold1009 SAMTools SNP 493410 493410 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold1009 SAMTools SNP 494095 494095 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 495389 495389 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.42%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C197:59 scaffold1009 SAMTools SNP 495536 495536 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.058%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold1009 SAMTools SNP 495549 495549 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 495772 495772 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1009 SAMTools SNP 496001 496001 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1009 SAMTools SNP 496173 496173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 496215 496215 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 497184 497184 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.48%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold1009 SAMTools SNP 497568 497568 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D41%3BFQ%3D53%3BPV4%3D0.44%2C0.086%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C80:83 scaffold1009 SAMTools SNP 497607 497607 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1009 SAMTools SNP 498671 498671 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1009 SAMTools SNP 499372 499372 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C219:99 scaffold1009 SAMTools SNP 502322 502322 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 502352 502352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 502612 502612 59.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 516140 516140 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1009 SAMTools SNP 623103 623103 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 623122 623122 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 625484 625484 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 630932 630932 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C4.3e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C242:73 scaffold1009 SAMTools SNP 632214 632214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 632220 632220 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1009 SAMTools SNP 632230 632230 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1009 SAMTools SNP 632504 632504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 638041 638041 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C255%2C0:99 scaffold1009 SAMTools SNP 638668 638668 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C62%2C14%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C4.6e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 639013 639013 37.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1009 SAMTools SNP 639093 639093 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C9.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1009 SAMTools SNP 639301 639301 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.17%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C223:57 scaffold1009 SAMTools SNP 639332 639332 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 639441 639441 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.54%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1009 SAMTools SNP 640463 640463 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C23%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.0027%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 641055 641055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 641094 641094 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1009 SAMTools SNP 641388 641388 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1009 SAMTools SNP 641415 641415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 643695 643695 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C17%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1009 SAMTools SNP 646153 646153 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 647682 647682 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.29%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1009 SAMTools SNP 647867 647867 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 649139 649139 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C48%2C0:93 scaffold1009 SAMTools SNP 649184 649184 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.066%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 649494 649494 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 649748 649748 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1009 SAMTools SNP 657088 657088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 660046 660046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C55%3BMQ%3D50%3BFQ%3D-251%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C0:99 scaffold1009 SAMTools SNP 660255 660255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 660330 660330 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1009 SAMTools SNP 661543 661543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 661846 661846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C30%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1009 SAMTools SNP 666470 666470 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C190:99 scaffold1009 SAMTools SNP 666703 666703 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 666706 666706 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.056%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1009 SAMTools SNP 666721 666721 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 666763 666763 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C226:71 scaffold1009 SAMTools SNP 668117 668117 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1009 SAMTools SNP 668180 668180 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C155:99 scaffold1009 SAMTools SNP 668505 668505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 669194 669194 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.062%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 669203 669203 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold1009 SAMTools SNP 670541 670541 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1009 SAMTools SNP 670550 670550 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1009 SAMTools SNP 671705 671705 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 671751 671751 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 671770 671770 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1009 SAMTools SNP 672670 672670 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 672709 672709 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 672736 672736 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 672960 672960 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1009 SAMTools SNP 673234 673234 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1009 SAMTools SNP 673256 673256 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 674195 674195 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C45%2C120%2C62%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.81%2C2.5e-237%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1009 SAMTools SNP 674334 674334 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C114%2C24%2C70%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C7.8e-143%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1009 SAMTools SNP 678479 678479 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1009 SAMTools SNP 679317 679317 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1009 SAMTools SNP 679901 679901 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.033%2C1.3e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C149:58 scaffold1009 SAMTools SNP 681836 681836 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 687929 687929 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 687935 687935 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1009 SAMTools SNP 688059 688059 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 688794 688794 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 689351 689351 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 693009 693009 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 693115 693115 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 694491 694491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 694496 694496 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C120%2C0%2C95%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00085%2C3.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1009 SAMTools SNP 694983 694983 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1009 SAMTools SNP 696538 696538 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C32%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.075%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697009 697009 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1009 SAMTools SNP 697030 697030 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.069%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1009 SAMTools SNP 697075 697075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.3%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697398 697398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 697899 697899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C38%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1009 SAMTools SNP 698495 698495 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 698504 698504 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1009 SAMTools SNP 698534 698534 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1009 SAMTools SNP 702646 702646 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C115:99 scaffold1009 SAMTools SNP 702920 702920 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C76%2C0%3BMQ%3D50%3BFQ%3D-228%3BPV4%3D0.013%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C201%2C0:99 scaffold1009 SAMTools SNP 702962 702962 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1009 SAMTools SNP 703007 703007 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1009 SAMTools SNP 703178 703178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1009 SAMTools SNP 703253 703253 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C16%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0051%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1009 SAMTools SNP 703485 703485 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.39%2C4.1e-19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1009 SAMTools SNP 703514 703514 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1009 SAMTools SNP 703520 703520 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C1%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1009 SAMTools SNP 703704 703704 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1009 SAMTools SNP 703743 703743 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C13%2C1%3BMQ%3D46%3BFQ%3D178%3BPV4%3D0.0034%2C1%2C0.05%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1009 SAMTools SNP 703809 703809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C33%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.043%2C0.35%2C0.31%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 705036 705036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C32%2C81%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.42%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 705887 705887 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1009 SAMTools SNP 707689 707689 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C8%2C20%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 708494 708494 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C51%2C0:99 scaffold1009 SAMTools SNP 708496 708496 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.53%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1009 SAMTools SNP 708825 708825 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C5%3BMQ%3D20%3BFQ%3D27%3BPV4%3D0.27%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C54:57 scaffold1009 SAMTools SNP 708848 708848 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D21%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C90%2C0:99 scaffold1009 SAMTools SNP 709360 709360 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D34%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C57%2C0:99 scaffold1009 SAMTools SNP 709407 709407 26.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold1009 SAMTools SNP 709444 709444 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C30%2C0:57 scaffold1009 SAMTools SNP 709468 709468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 709919 709919 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C8.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1009 SAMTools SNP 711172 711172 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C42%2C0:78 scaffold1009 SAMTools SNP 711190 711190 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C142:80 scaffold1009 SAMTools SNP 713080 713080 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1009 SAMTools SNP 713116 713116 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1009 SAMTools SNP 714006 714006 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.36%2C0.0011%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1009 SAMTools SNP 717570 717570 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.093%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1009 SAMTools SNP 717615 717615 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 717633 717633 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00071%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1009 SAMTools SNP 717919 717919 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C81%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 718147 718147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1009 SAMTools SNP 718167 718167 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 718429 718429 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C89%2C0%2C54%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1009 SAMTools SNP 718490 718490 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1009 SAMTools SNP 718495 718495 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C0.2%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1009 SAMTools SNP 718499 718499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 718615 718615 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.32%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold1009 SAMTools SNP 718873 718873 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00014%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1009 SAMTools SNP 718879 718879 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00017%2C0.022%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1009 SAMTools SNP 719164 719164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 719469 719469 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1009 SAMTools SNP 720158 720158 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C160:44 scaffold1009 SAMTools SNP 720216 720216 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1009 SAMTools SNP 723793 723793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1009 SAMTools SNP 724762 724762 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 724878 724878 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C40%2C22%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1009 SAMTools SNP 725787 725787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C83%2C3%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 726113 726113 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D3.1e-05%2C9.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 726727 726727 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C21%2C0:39 scaffold1009 SAMTools SNP 727653 727653 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C7%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.33%2C0.021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1009 SAMTools SNP 727762 727762 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D5.9e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 727938 727938 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C35%2C1%2C14%3BMQ%3D50%3BFQ%3D77%3BPV4%3D9.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 728159 728159 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1009 SAMTools SNP 728447 728447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 728651 728651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C117%2C57%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 729062 729062 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C44%2C27%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D2.2e-06%2C1.1e-15%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1009 SAMTools SNP 729143 729143 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C51%2C3%2C88%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1.3e-05%2C7.2e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1009 SAMTools SNP 729161 729161 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C45%2C3%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 729411 729411 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.12%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 729430 729430 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C0.1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1009 SAMTools SNP 729601 729601 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1009 SAMTools SNP 730528 730528 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.34%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1009 SAMTools SNP 730962 730962 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C0.16%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C138:61 scaffold1009 SAMTools SNP 731308 731308 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C3.1e-17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1009 SAMTools SNP 744167 744167 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1009 SAMTools SNP 749244 749244 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1009 SAMTools SNP 769182 769182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C56%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1009 SAMTools SNP 769740 769740 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C35%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.24%2C0.3%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 769953 769953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 780448 780448 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D571%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D257%2C57%2C170%2C68%3BMQ%3D41%3BFQ%3D222%3BPV4%3D0.0041%2C1%2C0.00022%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1009 SAMTools SNP 781061 781061 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C0%2C106%3BMQ%3D18%3BFQ%3D-223%3BPV4%3D0.0016%2C1%2C0.027%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C196%2C0:99 scaffold1009 SAMTools SNP 781552 781552 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1009 SAMTools SNP 795517 795517 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold1009 SAMTools SNP 796304 796304 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1009 SAMTools SNP 796389 796389 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 796565 796565 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 797682 797682 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold1009 SAMTools SNP 800980 800980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 801469 801469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 803717 803717 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1009 SAMTools SNP 804353 804353 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1009 SAMTools SNP 804407 804407 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C0%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.022%2C2.9e-08%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1009 SAMTools SNP 805069 805069 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 805173 805173 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 805866 805866 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 827280 827280 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C176:51 scaffold1009 SAMTools SNP 827336 827336 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.026%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1009 SAMTools SNP 910239 910239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D689%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D227%2C66%2C358%2C38%3BMQ%3D39%3BFQ%3D225%3BPV4%3D4.7e-06%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 913583 913583 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C110%3BMQ%3D27%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C255%2C0:99 scaffold1009 SAMTools SNP 954910 954910 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 956881 956881 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C114%2C33%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C3.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 956977 956977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1009 SAMTools SNP 957527 957527 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C11%2C74%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 958835 958835 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C12%2C0%2C61%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.2e-27%2C5.2e-31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1009 SAMTools SNP 959856 959856 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C86%3BMQ%3D50%3BFQ%3D-242%3BPV4%3D1%2C1.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C215%2C0:99 scaffold1009 SAMTools SNP 959869 959869 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-7.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C20:23 scaffold1009 SAMTools SNP 959922 959922 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C17%2C144%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.009%2C1e-241%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1009 SAMTools SNP 960033 960033 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1009 SAMTools SNP 961874 961874 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C0%2C11%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1009 SAMTools SNP 961877 961877 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.47%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1009 SAMTools SNP 962265 962265 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C126%2C0:99 scaffold1009 SAMTools SNP 964377 964377 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C206:63 scaffold1009 SAMTools SNP 965692 965692 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.058%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C85:70 scaffold1009 SAMTools SNP 967171 967171 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1009 SAMTools SNP 969682 969682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 973488 973488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 973609 973609 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold1009 SAMTools SNP 974211 974211 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-7.8%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C20:23 scaffold1009 SAMTools SNP 977376 977376 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C60%2C0:99 scaffold1009 SAMTools SNP 977613 977613 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.044%2C4.2e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 977924 977924 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C42%2C0:80 scaffold1009 SAMTools SNP 978571 978571 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 978576 978576 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C9.6e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1009 SAMTools SNP 978582 978582 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.29%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C209:99 scaffold1009 SAMTools SNP 978654 978654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C27%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 979620 979620 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.9e-22%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold1009 SAMTools SNP 979996 979996 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 980045 980045 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C110%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.039%2C0.41%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1009 SAMTools SNP 980976 980976 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C106%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 984332 984332 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C38%2C0%2C14%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.015%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1009 SAMTools SNP 984639 984639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 984660 984660 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C6%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.69%2C1%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1009 SAMTools SNP 984669 984669 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1009 SAMTools SNP 985033 985033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C28%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 985062 985062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 985087 985087 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1009 SAMTools SNP 985818 985818 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C211:99 scaffold1009 SAMTools SNP 985842 985842 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.56%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C246:99 scaffold1009 SAMTools SNP 1000599 1000599 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1001219 1001219 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C215:31 scaffold1009 SAMTools SNP 1001241 1001241 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0047%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 1001675 1001675 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C57%2C11%2C37%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.83%2C3.2e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1009 SAMTools SNP 1002405 1002405 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C59%2C58%2C42%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.89%2C1.4e-176%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1009 SAMTools SNP 1002656 1002656 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1009 SAMTools SNP 1002743 1002743 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C14%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1003732 1003732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1003793 1003793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1004334 1004334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1009 SAMTools SNP 1004489 1004489 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C62%2C60%2C62%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.53%2C2.8e-116%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1009 SAMTools SNP 1004781 1004781 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C3%2C0:6 scaffold1009 SAMTools SNP 1005132 1005132 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C90%2C149%2C86%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.19%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1009 SAMTools SNP 1006340 1006340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1009446 1009446 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C57%2C0:99 scaffold1009 SAMTools SNP 1009512 1009512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C5%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1009 SAMTools SNP 1016152 1016152 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C7%3BMQ%3D47%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1009 SAMTools SNP 1017729 1017729 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.1e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1009 SAMTools SNP 1019155 1019155 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C63%2C40%2C50%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.24%2C3.3e-124%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 1019242 1019242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C42%2C109%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1051038 1051038 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C9.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C218:79 scaffold1009 SAMTools SNP 1052127 1052127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1053085 1053085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1009 SAMTools SNP 1053097 1053097 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C195:99 scaffold1009 SAMTools SNP 1053340 1053340 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.079%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C237:99 scaffold1009 SAMTools SNP 1055104 1055104 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1055111 1055111 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1009 SAMTools SNP 1055146 1055146 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1009 SAMTools SNP 1055148 1055148 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1009 SAMTools SNP 1057704 1057704 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1009 SAMTools SNP 1057740 1057740 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1009 SAMTools SNP 1057985 1057985 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1009 SAMTools SNP 1058018 1058018 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 1058096 1058096 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1009 SAMTools SNP 1061342 1061342 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C102:99 scaffold1009 SAMTools SNP 1061349 1061349 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C234:99 scaffold1009 SAMTools SNP 1061577 1061577 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.5%2C2.9e-08%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 1064705 1064705 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1009 SAMTools SNP 1074107 1074107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C3%3BMQ%3D45%3BFQ%3D223%3BPV4%3D0.67%2C0.41%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1009 SAMTools SNP 1076632 1076632 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1076674 1076674 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C3%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D0.22%2C0.024%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1009 SAMTools SNP 1085652 1085652 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1009 SAMTools SNP 1087335 1087335 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1009 SAMTools SNP 1087715 1087715 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.019%2C0.00015%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1009 SAMTools SNP 1089020 1089020 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1009 SAMTools SNP 1089371 1089371 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.21%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1009 SAMTools SNP 1089477 1089477 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.52%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1009 SAMTools SNP 1090504 1090504 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1009 SAMTools SNP 1090760 1090760 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.2%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1009 SAMTools SNP 1091354 1091354 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.27%2C0.045%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1009 SAMTools SNP 1093046 1093046 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.29%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1009 SAMTools SNP 1093652 1093652 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.066%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C186:51 scaffold1009 SAMTools SNP 1094061 1094061 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0022%2C0.00075%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C152:99 scaffold1009 SAMTools SNP 1094252 1094252 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 1095045 1095045 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.34%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1009 SAMTools SNP 1096110 1096110 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.6%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1009 SAMTools SNP 1096113 1096113 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1009 SAMTools SNP 1097213 1097213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1100289 1100289 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C8.4e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1009 SAMTools SNP 1102404 1102404 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.012%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C137:84 scaffold1009 SAMTools SNP 1102414 1102414 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.2%2C0.038%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C189:90 scaffold1009 SAMTools SNP 1102812 1102812 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C6%2C61%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1103193 1103193 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C179:99 scaffold1009 SAMTools SNP 1103226 1103226 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1009 SAMTools SNP 1103273 1103273 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1009 SAMTools SNP 1103623 1103623 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.15%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1104103 1104103 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold1009 SAMTools SNP 1105708 1105708 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1009 SAMTools SNP 1106308 1106308 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1009 SAMTools SNP 1106332 1106332 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1009 SAMTools SNP 1106359 1106359 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1009 SAMTools SNP 1107155 1107155 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1107211 1107211 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C253:99 scaffold1009 SAMTools SNP 1107324 1107324 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1009 SAMTools SNP 1110771 1110771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1111532 1111532 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C61%2C1%2C37%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.42%2C3.4e-16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1009 SAMTools SNP 1112557 1112557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C18%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1113362 1113362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C96%2C39%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-08%2C1.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1114024 1114024 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 1114036 1114036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1115627 1115627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C16%2C33%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-16%2C1%2C1%2C4.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1116466 1116466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1116500 1116500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1009 SAMTools SNP 1122959 1122959 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D1%2C0.051%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C162:28 scaffold1009 SAMTools SNP 1133076 1133076 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C24%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1009 SAMTools SNP 1133839 1133839 44.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1009 SAMTools SNP 1134049 1134049 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.53%2C0.0091%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1009 SAMTools SNP 1134070 1134070 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C158:56 scaffold1009 SAMTools SNP 1140650 1140650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.2e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1141530 1141530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1141547 1141547 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1142007 1142007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1142736 1142736 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C80:78 scaffold1009 SAMTools SNP 1143001 1143001 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D10.4%3BPV4%3D1%2C0.074%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C169:39 scaffold1009 SAMTools SNP 1143101 1143101 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D37%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C148:33 scaffold1009 SAMTools SNP 1143119 1143119 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D27%3BFQ%3D9.74%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold1009 SAMTools SNP 1147298 1147298 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1147307 1147307 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1149639 1149639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1009 SAMTools SNP 1149649 1149649 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1150448 1150448 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C35%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1009 SAMTools SNP 1150582 1150582 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C5%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1009 SAMTools SNP 1150595 1150595 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1009 SAMTools SNP 1150631 1150631 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.021%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold1009 SAMTools SNP 1151520 1151520 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C35:38 scaffold1009 SAMTools SNP 1151565 1151565 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1009 SAMTools SNP 1151831 1151831 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.48%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1009 SAMTools SNP 1152136 1152136 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1009 SAMTools SNP 1152148 1152148 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1009 SAMTools SNP 1152175 1152175 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1153210 1153210 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1009 SAMTools SNP 1154025 1154025 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C11%3BMQ%3D13%3BFQ%3D-105%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C78%2C0:99 scaffold1009 SAMTools SNP 1241845 1241845 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1009 SAMTools SNP 1277212 1277212 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold1009 SAMTools SNP 1322739 1322739 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1009 SAMTools SNP 1368870 1368870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1370392 1370392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C43%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1009 SAMTools SNP 1373905 1373905 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1009 SAMTools SNP 1373963 1373963 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1377388 1377388 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1009 SAMTools SNP 1377392 1377392 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1379938 1379938 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1009 SAMTools SNP 1386574 1386574 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1009 SAMTools SNP 1386593 1386593 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C171:99 scaffold1009 SAMTools SNP 1386620 1386620 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.057%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1009 SAMTools SNP 1394219 1394219 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1009 SAMTools SNP 1396027 1396027 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C8%2C5%3BMQ%3D41%3BFQ%3D137%3BPV4%3D0.72%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C241:99 scaffold1009 SAMTools SNP 1396836 1396836 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C224:99 scaffold1009 SAMTools SNP 1399786 1399786 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1009 SAMTools SNP 1401301 1401301 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C7.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C77:36 scaffold1009 SAMTools SNP 1402541 1402541 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C221:72 scaffold1009 SAMTools SNP 1402550 1402550 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1009 SAMTools SNP 1402647 1402647 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1402692 1402692 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1009 SAMTools SNP 1405784 1405784 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C31%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D4.3e-07%2C9.2e-09%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C230:34 scaffold1009 SAMTools SNP 1405898 1405898 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1405899 1405899 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1009 SAMTools SNP 1405900 1405900 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1009 SAMTools SNP 1405948 1405948 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1009 SAMTools SNP 1406187 1406187 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1412207 1412207 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold1009 SAMTools SNP 1413085 1413085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C20%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1009 SAMTools SNP 1415812 1415812 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.01%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1009 SAMTools SNP 1416590 1416590 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C0%2C22%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.021%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1009 SAMTools SNP 1416608 1416608 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1009 SAMTools SNP 1417100 1417100 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1009 SAMTools SNP 1419149 1419149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1419192 1419192 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1009 SAMTools SNP 1421297 1421297 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1424794 1424794 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.51%2C1.4e-20%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C137:99 scaffold1009 SAMTools SNP 1442166 1442166 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold1009 SAMTools SNP 1442496 1442496 16.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C9:12 scaffold1009 SAMTools SNP 1442697 1442697 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C91%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.15%2C3e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C255%2C0:99 scaffold1009 SAMTools SNP 1442856 1442856 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 1442964 1442964 168 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C19%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C250%2C0%2C203%2C233%2C200:99 scaffold1009 SAMTools SNP 1443114 1443114 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C175%2C0:99 scaffold1009 SAMTools SNP 1443294 1443294 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1443559 1443559 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1009 SAMTools SNP 1443568 1443568 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0214%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1009 SAMTools SNP 1443580 1443580 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C13%2C0%3BMQ%3D49%3BFQ%3D143%3BPV4%3D0.57%2C1%2C0.36%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1009 SAMTools SNP 1444278 1444278 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C15%2C1%3BMQ%3D49%3BFQ%3D177%3BPV4%3D0.67%2C0.32%2C0.38%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1009 SAMTools SNP 1444717 1444717 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C14%2C0%3BMQ%3D49%3BFQ%3D111%3BPV4%3D8.8e-12%2C2e-12%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1009 SAMTools SNP 1445259 1445259 11.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1009 SAMTools SNP 1447243 1447243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1447267 1447267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1009 SAMTools SNP 1447834 1447834 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.17%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1009 SAMTools SNP 1447864 1447864 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.058%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1009 SAMTools SNP 1448227 1448227 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C13%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C3.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1009 SAMTools SNP 1449675 1449675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C13%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1009 SAMTools SNP 1450443 1450443 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C14%2C23%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1009 SAMTools SNP 1450487 1450487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C182%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1450613 1450613 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C120%2C2%2C27%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1009 SAMTools SNP 1451194 1451194 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C92%2C1%2C11%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.51%2C1%2C1%2C1.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1009 SAMTools SNP 1451326 1451326 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1009 SAMTools SNP 1451702 1451702 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1451795 1451795 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1009 SAMTools SNP 1451810 1451810 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C21%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1009 SAMTools SNP 1451816 1451816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.00043%2C0.057%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1009 SAMTools SNP 1451843 1451843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C22%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1452337 1452337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1452370 1452370 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C11%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D2.7e-07%2C1%2C1%2C6.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1009 SAMTools SNP 1453068 1453068 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1453389 1453389 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C201:58 scaffold1009 SAMTools SNP 1453501 1453501 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1009 SAMTools SNP 1453502 1453502 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1009 SAMTools SNP 1453503 1453503 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1009 SAMTools SNP 1453509 1453509 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1009 SAMTools SNP 1453781 1453781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 1454036 1454036 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold1009 SAMTools SNP 1454301 1454301 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.6e-08%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C177:46 scaffold1009 SAMTools SNP 1454496 1454496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1454628 1454628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.074%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1454631 1454631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1461443 1461443 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1009 SAMTools SNP 1461451 1461451 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1009 SAMTools SNP 1461690 1461690 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1462157 1462157 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C93%2C0:99 scaffold1009 SAMTools SNP 1463392 1463392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C7%2C36%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.67%2C0.021%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1009 SAMTools SNP 1464339 1464339 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C22%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1009 SAMTools SNP 1464553 1464553 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C34%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1465321 1465321 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1466342 1466342 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1466387 1466387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C45%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1009 SAMTools SNP 1466405 1466405 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1009 SAMTools SNP 1466681 1466681 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1009 SAMTools SNP 1466867 1466867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C27%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1467539 1467539 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1009 SAMTools SNP 1467612 1467612 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C11%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1468707 1468707 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1468719 1468719 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1009 SAMTools SNP 1469118 1469118 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.13%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1469148 1469148 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1009 SAMTools SNP 1469231 1469231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1473477 1473477 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1009 SAMTools SNP 1473501 1473501 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.58%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1009 SAMTools SNP 1473694 1473694 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C126%2C0:99 scaffold1009 SAMTools SNP 1475456 1475456 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.12%2C1.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1009 SAMTools SNP 1475564 1475564 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C19%2C8%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1009 SAMTools SNP 1475678 1475678 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1475748 1475748 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1009 SAMTools SNP 1475775 1475775 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1009 SAMTools SNP 1478554 1478554 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 1478589 1478589 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 1487915 1487915 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1009 SAMTools SNP 1488054 1488054 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.19%2C6.2e-15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C245:99 scaffold1009 SAMTools SNP 1488344 1488344 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C2.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1009 SAMTools SNP 1488759 1488759 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1009 SAMTools SNP 1490197 1490197 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1499829 1499829 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1009 SAMTools SNP 1499851 1499851 77.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1009 SAMTools SNP 1500217 1500217 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.6%2C2.5e-13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1009 SAMTools SNP 1500510 1500510 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold1009 SAMTools SNP 1501294 1501294 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1501314 1501314 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1504170 1504170 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1504404 1504404 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1504710 1504710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1009 SAMTools SNP 1504738 1504738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1009 SAMTools SNP 1504795 1504795 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1009 SAMTools SNP 1505380 1505380 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1009 SAMTools SNP 1507709 1507709 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1009 SAMTools SNP 1507761 1507761 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1009 SAMTools SNP 1518243 1518243 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1518961 1518961 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1009 SAMTools SNP 1519531 1519531 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1519533 1519533 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1520386 1520386 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold1009 SAMTools SNP 1520395 1520395 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.047%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1009 SAMTools SNP 1520419 1520419 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1009 SAMTools SNP 1521046 1521046 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1009 SAMTools SNP 1521070 1521070 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1009 SAMTools SNP 1521075 1521075 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1009 SAMTools SNP 1522670 1522670 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1522711 1522711 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.091%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1522963 1522963 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C115:99 scaffold1009 SAMTools SNP 1523008 1523008 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1523050 1523050 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1523862 1523862 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.088%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C219:99 scaffold1009 SAMTools SNP 1523864 1523864 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold1009 SAMTools SNP 1523898 1523898 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1009 SAMTools SNP 1524243 1524243 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1524257 1524257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C6%2C39%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1524838 1524838 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1528161 1528161 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C72%2C0:99 scaffold1009 SAMTools SNP 1528512 1528512 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528518 1528518 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1528807 1528807 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1528846 1528846 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528860 1528860 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1528888 1528888 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1009 SAMTools SNP 1529650 1529650 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1009 SAMTools SNP 1535444 1535444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1009 SAMTools SNP 1535842 1535842 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold1009 SAMTools SNP 1537521 1537521 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C27%2C0:51 scaffold1009 SAMTools SNP 1538085 1538085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1009 SAMTools SNP 1538114 1538114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1540475 1540475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1540814 1540814 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1009 SAMTools SNP 1540968 1540968 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1009 SAMTools SNP 1550871 1550871 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1552070 1552070 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1552705 1552705 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1009 SAMTools SNP 1554049 1554049 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1009 SAMTools SNP 1554107 1554107 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C166:99 scaffold1009 SAMTools SNP 1554114 1554114 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1009 SAMTools SNP 1558067 1558067 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold1009 SAMTools SNP 1558111 1558111 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1559151 1559151 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1009 SAMTools SNP 1560060 1560060 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1009 SAMTools SNP 1561247 1561247 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C35:38 scaffold1009 SAMTools SNP 1573098 1573098 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C185:44 scaffold1009 SAMTools SNP 1573271 1573271 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 1574460 1574460 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1579258 1579258 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1579274 1579274 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1584986 1584986 173 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0%2C195%2C1%2C192:39 scaffold1009 SAMTools SNP 1585201 1585201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1009 SAMTools SNP 1585550 1585550 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1009 SAMTools SNP 1586604 1586604 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1586646 1586646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1588529 1588529 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1588732 1588732 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1588735 1588735 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1592221 1592221 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1592873 1592873 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1009 SAMTools SNP 1592897 1592897 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1009 SAMTools SNP 1592987 1592987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1009 SAMTools SNP 1593981 1593981 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.43%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold1009 SAMTools SNP 1595135 1595135 92.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1009 SAMTools SNP 1595625 1595625 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1595638 1595638 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1009 SAMTools SNP 1595922 1595922 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C24%2C0:45 scaffold1009 SAMTools SNP 1595955 1595955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1009 SAMTools SNP 1596456 1596456 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1598519 1598519 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8005%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D434%2C3684%2C401%2C3483%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C9.4e-07%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1600937 1600937 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2522%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D379%2C769%2C156%2C616%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-10%2C1%2C1%2C3.2e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1601584 1601584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3671%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D594%2C816%2C1171%2C808%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-22%2C1.6e-161%2C1%2C5.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1601650 1601650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1684%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C239%2C134%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C6e-170%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1602198 1602198 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1009 SAMTools SNP 1603507 1603507 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.042%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1009 SAMTools SNP 1612436 1612436 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1616834 1616834 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1009 SAMTools SNP 1617606 1617606 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1009 SAMTools SNP 1617816 1617816 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1009 SAMTools SNP 1617835 1617835 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1009 SAMTools SNP 1618059 1618059 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1009 SAMTools SNP 1618123 1618123 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1009 SAMTools SNP 1618733 1618733 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1619932 1619932 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1009 SAMTools SNP 1621294 1621294 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1625698 1625698 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1625739 1625739 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1626852 1626852 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C24%2C0:45 scaffold1009 SAMTools SNP 1627143 1627143 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D46%3BFQ%3D51%3BPV4%3D1%2C0.078%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C78:81 scaffold1009 SAMTools SNP 1627580 1627580 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1009 SAMTools SNP 1628104 1628104 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1634012 1634012 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1009 SAMTools SNP 1634146 1634146 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C9%3BMQ%3D46%3BFQ%3D20.1%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C47:50 scaffold1009 SAMTools SNP 1634450 1634450 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1009 SAMTools SNP 1634453 1634453 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C40:43 scaffold1009 SAMTools SNP 1636275 1636275 11.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1009 SAMTools SNP 1636344 1636344 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1009 SAMTools SNP 1636386 1636386 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1009 SAMTools SNP 1637067 1637067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1637124 1637124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1637270 1637270 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.033%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1009 SAMTools SNP 1645355 1645355 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C118:54 scaffold1009 SAMTools SNP 1647308 1647308 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1661496 1661496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1670519 1670519 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C219:99 scaffold1009 SAMTools SNP 1679566 1679566 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1679590 1679590 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.43%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C71:39 scaffold1009 SAMTools SNP 1683313 1683313 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1009 SAMTools SNP 1683321 1683321 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1683406 1683406 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C125%2C36%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1.4e-23%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1009 SAMTools SNP 1685630 1685630 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C25%2C138%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1685650 1685650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C19%2C84%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1685705 1685705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1009 SAMTools SNP 1685892 1685892 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C40%2C32%2C24%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.32%2C7e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 1686314 1686314 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1e-09%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C243:42 scaffold1009 SAMTools SNP 1697324 1697324 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1009 SAMTools SNP 1701267 1701267 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1009 SAMTools SNP 1701303 1701303 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1009 SAMTools SNP 1701315 1701315 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1722013 1722013 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.45%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1009 SAMTools SNP 1722463 1722463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C10%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1009 SAMTools SNP 1722484 1722484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1009 SAMTools SNP 1722808 1722808 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1009 SAMTools SNP 1722812 1722812 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1722821 1722821 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1009 SAMTools SNP 1723466 1723466 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1009 SAMTools SNP 1723491 1723491 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1009 SAMTools SNP 1723843 1723843 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1723844 1723844 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1009 SAMTools SNP 1723915 1723915 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1009 SAMTools SNP 1724610 1724610 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1726016 1726016 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1726835 1726835 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1009 SAMTools SNP 1727363 1727363 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1727742 1727742 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1009 SAMTools SNP 1729322 1729322 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1730737 1730737 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1009 SAMTools SNP 1731069 1731069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1009 SAMTools SNP 1731397 1731397 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1009 SAMTools SNP 1731409 1731409 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.091%2C0.027%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1009 SAMTools SNP 1731983 1731983 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1009 SAMTools SNP 1732101 1732101 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1009 SAMTools SNP 1732164 1732164 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1009 SAMTools SNP 1732635 1732635 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1009 SAMTools SNP 1733543 1733543 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1009 SAMTools SNP 1733578 1733578 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1009 SAMTools SNP 1734193 1734193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1734349 1734349 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1009 SAMTools SNP 1734841 1734841 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1009 SAMTools SNP 1734897 1734897 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.038%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1009 SAMTools SNP 1735259 1735259 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1009 SAMTools SNP 1735423 1735423 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1741685 1741685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C0%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1742287 1742287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C350%2C96%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1009 SAMTools SNP 1742601 1742601 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D745%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D276%2C217%2C114%2C131%3BMQ%3D46%3BFQ%3D57%3BPV4%3D0.019%2C0%2C8.8e-63%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1009 SAMTools SNP 1744108 1744108 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C4%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C2.9e-05%2C0.49%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1744120 1744120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C5%2C48%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.7%2C1.5e-06%2C0.48%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1744132 1744132 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C1%2C24%3BMQ%3D44%3BFQ%3D162%3BPV4%3D0.66%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1009 SAMTools SNP 1744884 1744884 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D29%3BFQ%3D87%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C135:99 scaffold1009 SAMTools SNP 1744905 1744905 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C27%2C0:51 scaffold1009 SAMTools SNP 1744953 1744953 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1009 SAMTools SNP 1753615 1753615 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1009 SAMTools SNP 1754156 1754156 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1009 SAMTools SNP 1754180 1754180 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D1%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold1009 SAMTools SNP 1754683 1754683 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C0.22%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C37:40 scaffold1009 SAMTools SNP 1754701 1754701 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.49%2C0.14%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold1009 SAMTools SNP 1755081 1755081 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1755343 1755343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1009 SAMTools SNP 1759746 1759746 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.33%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1009 SAMTools SNP 1759764 1759764 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1009 SAMTools SNP 1761235 1761235 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D0.37%2C3.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C26:29 scaffold1009 SAMTools SNP 1761256 1761256 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1009 SAMTools SNP 1761274 1761274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1009 SAMTools SNP 1762013 1762013 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C8%3BMQ%3D47%3BFQ%3D98%3BPV4%3D1%2C0.087%2C0.0016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1009 SAMTools SNP 1762058 1762058 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1009 SAMTools SNP 1762091 1762091 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C107:99 scaffold1009 SAMTools SNP 1762106 1762106 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C251:99 scaffold1009 SAMTools SNP 1762477 1762477 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1009 SAMTools SNP 1762525 1762525 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold101 SAMTools SNP 1435 1435 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold101 SAMTools SNP 1650 1650 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 3888 3888 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold101 SAMTools SNP 4258 4258 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C15%2C19%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.8%2C0.027%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 13407 13407 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold101 SAMTools SNP 21129 21129 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold101 SAMTools SNP 87308 87308 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold101 SAMTools SNP 87784 87784 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold101 SAMTools SNP 88807 88807 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold101 SAMTools SNP 90071 90071 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold101 SAMTools SNP 90373 90373 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold101 SAMTools SNP 90526 90526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 90749 90749 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold101 SAMTools SNP 91576 91576 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold101 SAMTools SNP 120831 120831 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.5%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C98:99 scaffold101 SAMTools SNP 123736 123736 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C0.47%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold101 SAMTools SNP 124105 124105 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.6e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold101 SAMTools SNP 124148 124148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold101 SAMTools SNP 124894 124894 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold101 SAMTools SNP 124900 124900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.6%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold101 SAMTools SNP 127930 127930 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold101 SAMTools SNP 127946 127946 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 128628 128628 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 129673 129673 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold101 SAMTools SNP 129678 129678 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.018%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold101 SAMTools SNP 129864 129864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold101 SAMTools SNP 129891 129891 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold101 SAMTools SNP 130417 130417 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C117%2C0:99 scaffold101 SAMTools SNP 134859 134859 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold101 SAMTools SNP 135646 135646 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold101 SAMTools SNP 136383 136383 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.5%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 136731 136731 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 136998 136998 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 137239 137239 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C35%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 142757 142757 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold101 SAMTools SNP 142774 142774 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.46%2C9.7e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C76:49 scaffold101 SAMTools SNP 144727 144727 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold101 SAMTools SNP 146979 146979 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C225%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 147049 147049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C14%2C17%2C273%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.61%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 152540 152540 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152552 152552 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152672 152672 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 152921 152921 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold101 SAMTools SNP 153186 153186 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 153197 153197 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 154818 154818 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold101 SAMTools SNP 154872 154872 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold101 SAMTools SNP 157081 157081 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 158839 158839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 158854 158854 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 158899 158899 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 158938 158938 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold101 SAMTools SNP 158947 158947 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold101 SAMTools SNP 159810 159810 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold101 SAMTools SNP 165712 165712 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold101 SAMTools SNP 167211 167211 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold101 SAMTools SNP 169109 169109 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold101 SAMTools SNP 169431 169431 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold101 SAMTools SNP 169808 169808 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold101 SAMTools SNP 169820 169820 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C238:99 scaffold101 SAMTools SNP 170619 170619 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold101 SAMTools SNP 171014 171014 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 177136 177136 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 177190 177190 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.17%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C10%2C0:17 scaffold101 SAMTools SNP 177241 177241 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold101 SAMTools SNP 177740 177740 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold101 SAMTools SNP 178747 178747 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold101 SAMTools SNP 178968 178968 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C230:99 scaffold101 SAMTools SNP 179718 179718 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold101 SAMTools SNP 179870 179870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 179880 179880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 181919 181919 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold101 SAMTools SNP 181926 181926 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold101 SAMTools SNP 182026 182026 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 182050 182050 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold101 SAMTools SNP 185449 185449 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 189627 189627 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 189645 189645 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 199620 199620 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold101 SAMTools SNP 204968 204968 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 226351 226351 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226384 226384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.48%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226441 226441 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 226682 226682 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold101 SAMTools SNP 226685 226685 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold101 SAMTools SNP 226739 226739 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.041%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold101 SAMTools SNP 228460 228460 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 229111 229111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.05%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 229476 229476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C21%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold101 SAMTools SNP 229922 229922 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C12%2C1%3BMQ%3D49%3BFQ%3D191%3BPV4%3D0.015%2C0.027%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold101 SAMTools SNP 229970 229970 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold101 SAMTools SNP 229978 229978 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C11%2C33%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.61%2C1.8e-31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold101 SAMTools SNP 230132 230132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C4%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 232035 232035 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C23:26 scaffold101 SAMTools SNP 233148 233148 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.16%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold101 SAMTools SNP 234865 234865 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold101 SAMTools SNP 235990 235990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 239140 239140 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold101 SAMTools SNP 242840 242840 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 242861 242861 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 246248 246248 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C24%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C232:99 scaffold101 SAMTools SNP 246271 246271 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C230:99 scaffold101 SAMTools SNP 248261 248261 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold101 SAMTools SNP 261979 261979 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold101 SAMTools SNP 262213 262213 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold101 SAMTools SNP 262270 262270 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.26%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C74:77 scaffold101 SAMTools SNP 264084 264084 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.38%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold101 SAMTools SNP 264087 264087 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold101 SAMTools SNP 264105 264105 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 264123 264123 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold101 SAMTools SNP 264610 264610 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 264936 264936 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 264978 264978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold101 SAMTools SNP 265510 265510 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold101 SAMTools SNP 265553 265553 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold101 SAMTools SNP 280541 280541 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C227:48 scaffold101 SAMTools SNP 280560 280560 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold101 SAMTools SNP 280561 280561 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold101 SAMTools SNP 280689 280689 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 285912 285912 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold101 SAMTools SNP 288379 288379 27.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold101 SAMTools SNP 291872 291872 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 291884 291884 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C127%2C166%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 294440 294440 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C20%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C9.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295831 295831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C103%2C0%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C5.6e-35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295851 295851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 295867 295867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C5%2C2%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-26%2C0.033%2C1%2C1.5e-57;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 295944 295944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold101 SAMTools SNP 295947 295947 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C73%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0014%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C253:99 scaffold101 SAMTools SNP 296345 296345 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold101 SAMTools SNP 296996 296996 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C308%2C81%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297041 297041 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C75%2C335%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297059 297059 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C325%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 297492 297492 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C62%2C146%2C39%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.014%2C3.2e-93%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 297961 297961 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold101 SAMTools SNP 305006 305006 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold101 SAMTools SNP 305774 305774 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C8%2C31%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold101 SAMTools SNP 305879 305879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C145%2C19%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 306273 306273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold101 SAMTools SNP 308453 308453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C3%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C3.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 308489 308489 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0044%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C20:23 scaffold101 SAMTools SNP 309014 309014 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.2%2C6.4e-10%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C99:62 scaffold101 SAMTools SNP 309606 309606 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold101 SAMTools SNP 312478 312478 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold101 SAMTools SNP 312500 312500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold101 SAMTools SNP 315243 315243 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold101 SAMTools SNP 315273 315273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 315354 315354 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C57%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 315816 315816 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.14%2C1e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold101 SAMTools SNP 315817 315817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 315869 315869 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C57%2C51%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.39%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 316441 316441 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 316462 316462 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C52%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 316498 316498 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C0%2C37%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.069%2C0.0012%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold101 SAMTools SNP 316501 316501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.085%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 317586 317586 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 317589 317589 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 317988 317988 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold101 SAMTools SNP 318481 318481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C0%2C152%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 319243 319243 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold101 SAMTools SNP 321107 321107 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C47%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold101 SAMTools SNP 321127 321127 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C153%2C1%2C47%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.24%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold101 SAMTools SNP 328260 328260 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 328349 328349 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 332777 332777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D829%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D271%2C227%2C0%2C327%3BMQ%3D47%3BFQ%3D225%3BPV4%3D2.4e-78%2C9e-10%2C0.00014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 332828 332828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D768%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C472%2C0%2C275%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold101 SAMTools SNP 334516 334516 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C283%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 334546 334546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold101 SAMTools SNP 334603 334603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D994%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C842%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 335553 335553 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 335590 335590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 335843 335843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2227%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C2%2C982%2C1216%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold101 SAMTools SNP 341497 341497 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D0.33%2C0.13%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold101 SAMTools SNP 343160 343160 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C21%2C0:39 scaffold101 SAMTools SNP 343623 343623 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold101 SAMTools SNP 343656 343656 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold101 SAMTools SNP 360516 360516 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold101 SAMTools SNP 364719 364719 91.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold101 SAMTools SNP 364934 364934 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold101 SAMTools SNP 386473 386473 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold101 SAMTools SNP 388147 388147 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold101 SAMTools SNP 417528 417528 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 417887 417887 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 420391 420391 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.37%2C3.6e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C118:28 scaffold101 SAMTools SNP 421133 421133 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold101 SAMTools SNP 421986 421986 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 423436 423436 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 423450 423450 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 550334 550334 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C12%3BMQ%3D48%3BFQ%3D61%3BPV4%3D0.3%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold101 SAMTools SNP 606346 606346 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold101 SAMTools SNP 610393 610393 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 610551 610551 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 620439 620439 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 620906 620906 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold101 SAMTools SNP 621527 621527 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 621572 621572 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold101 SAMTools SNP 640023 640023 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold101 SAMTools SNP 681147 681147 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold101 SAMTools SNP 682141 682141 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 6603 6603 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 6647 6647 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 6662 6662 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1014 SAMTools SNP 6686 6686 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 25906 25906 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1014 SAMTools SNP 25945 25945 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C239:99 scaffold1014 SAMTools SNP 26863 26863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1014 SAMTools SNP 27090 27090 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1014 SAMTools SNP 36235 36235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1014 SAMTools SNP 36780 36780 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1014 SAMTools SNP 37247 37247 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C293%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37284 37284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37314 37314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C49%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold1014 SAMTools SNP 37455 37455 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 37757 37757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C3%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 38062 38062 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 38514 38514 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C61%2C15%2C51%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.042%2C0.056%2C5.1e-08%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 39807 39807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C69%2C15%2C52%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 39816 39816 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C96%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 39854 39854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C39%2C9%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 40496 40496 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.01%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 41077 41077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C42%2C25%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold1014 SAMTools SNP 41113 41113 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C16%2C66%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold1014 SAMTools SNP 41160 41160 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C35%2C69%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C144:99 scaffold1014 SAMTools SNP 43555 43555 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C7.8e-12%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 43604 43604 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C45%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C232:33 scaffold1014 SAMTools SNP 43622 43622 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1014 SAMTools SNP 45308 45308 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1014 SAMTools SNP 45851 45851 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C3.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1014 SAMTools SNP 46260 46260 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 46469 46469 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 49620 49620 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1014 SAMTools SNP 50751 50751 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 52342 52342 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 52493 52493 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1014 SAMTools SNP 52534 52534 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1014 SAMTools SNP 52553 52553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 56627 56627 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 84468 84468 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1014 SAMTools SNP 84663 84663 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1014 SAMTools SNP 87360 87360 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C55:58 scaffold1014 SAMTools SNP 87392 87392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1014 SAMTools SNP 87506 87506 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1014 SAMTools SNP 87809 87809 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1014 SAMTools SNP 88331 88331 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.032%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C126:99 scaffold1014 SAMTools SNP 88364 88364 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1014 SAMTools SNP 88418 88418 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1014 SAMTools SNP 89252 89252 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1014 SAMTools SNP 89258 89258 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.47%2C0.2%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold1014 SAMTools SNP 89351 89351 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 89644 89644 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.33%2C9.6e-33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1014 SAMTools SNP 90069 90069 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1014 SAMTools SNP 90116 90116 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1014 SAMTools SNP 90169 90169 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1014 SAMTools SNP 90739 90739 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C33%2C0:63 scaffold1014 SAMTools SNP 91161 91161 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1014 SAMTools SNP 94350 94350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 96615 96615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1014 SAMTools SNP 98153 98153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1014 SAMTools SNP 98174 98174 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1014 SAMTools SNP 98304 98304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1014 SAMTools SNP 98878 98878 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1014 SAMTools SNP 100029 100029 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C30%2C0:50 scaffold1014 SAMTools SNP 102608 102608 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1014 SAMTools SNP 102616 102616 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold1014 SAMTools SNP 102656 102656 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C239:99 scaffold1014 SAMTools SNP 103107 103107 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C63%2C0:99 scaffold1014 SAMTools SNP 103350 103350 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 106979 106979 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 106985 106985 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 106990 106990 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.061%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1014 SAMTools SNP 107260 107260 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1014 SAMTools SNP 107294 107294 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 108303 108303 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 110194 110194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C35%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1014 SAMTools SNP 110221 110221 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C30%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1014 SAMTools SNP 110236 110236 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C4%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C187%2C0:99 scaffold1014 SAMTools SNP 110344 110344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 111675 111675 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1014 SAMTools SNP 112190 112190 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.21%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 112259 112259 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1014 SAMTools SNP 112271 112271 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 112782 112782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C43%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113108 113108 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113117 113117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C0%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 113174 113174 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C60%2C0:99 scaffold1014 SAMTools SNP 113201 113201 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1014 SAMTools SNP 113240 113240 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1014 SAMTools SNP 113595 113595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.065%2C0.29%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1014 SAMTools SNP 113792 113792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 114699 114699 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1014 SAMTools SNP 115397 115397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C86%2C9%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115418 115418 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115451 115451 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 115496 115496 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 116455 116455 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C0.18%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117296 117296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117374 117374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 117531 117531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C6%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.49%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 118035 118035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 118062 118062 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1014 SAMTools SNP 118412 118412 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D6.6e-05%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1014 SAMTools SNP 118424 118424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D8.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1014 SAMTools SNP 118532 118532 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C1%2C26%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.04%2C0.059%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1014 SAMTools SNP 119082 119082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C36%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119112 119112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119127 119127 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C35%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1014 SAMTools SNP 119145 119145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C41%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119459 119459 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C6%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1014 SAMTools SNP 119462 119462 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119486 119486 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C9%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.00064%2C4.1e-12%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1014 SAMTools SNP 119504 119504 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C34%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1014 SAMTools SNP 119576 119576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C14%2C66%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119849 119849 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C11%2C66%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 119966 119966 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C69%2C97%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 120352 120352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 120493 120493 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C27%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C4.2e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1014 SAMTools SNP 120572 120572 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C23%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C41%2C0:79 scaffold1014 SAMTools SNP 120682 120682 19 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1014 SAMTools SNP 123077 123077 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 123474 123474 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 124440 124440 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 124449 124449 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 126471 126471 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1014 SAMTools SNP 126998 126998 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1014 SAMTools SNP 127145 127145 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 127928 127928 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 128129 128129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 128162 128162 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 128492 128492 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1014 SAMTools SNP 128548 128548 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1014 SAMTools SNP 128778 128778 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 129446 129446 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 129554 129554 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1014 SAMTools SNP 129720 129720 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1014 SAMTools SNP 129777 129777 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold1014 SAMTools SNP 129801 129801 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1014 SAMTools SNP 130153 130153 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1014 SAMTools SNP 130204 130204 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1014 SAMTools SNP 132718 132718 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 133558 133558 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1014 SAMTools SNP 133663 133663 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1014 SAMTools SNP 133664 133664 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 133829 133829 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1014 SAMTools SNP 134615 134615 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1014 SAMTools SNP 134653 134653 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C33%2C0:63 scaffold1014 SAMTools SNP 135718 135718 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 135723 135723 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 136023 136023 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 136053 136053 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 136317 136317 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1014 SAMTools SNP 136652 136652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138370 138370 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138429 138429 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 138489 138489 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 140960 140960 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 141624 141624 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C251:33 scaffold1014 SAMTools SNP 142818 142818 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1014 SAMTools SNP 142893 142893 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1014 SAMTools SNP 142928 142928 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1014 SAMTools SNP 145445 145445 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 145456 145456 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 146382 146382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1014 SAMTools SNP 150251 150251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1014 SAMTools SNP 150338 150338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1014 SAMTools SNP 150360 150360 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold1014 SAMTools SNP 153495 153495 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1014 SAMTools SNP 153573 153573 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold1014 SAMTools SNP 154306 154306 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 154848 154848 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1014 SAMTools SNP 154902 154902 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1014 SAMTools SNP 154959 154959 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold1014 SAMTools SNP 155343 155343 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1014 SAMTools SNP 155547 155547 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 155562 155562 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1014 SAMTools SNP 155934 155934 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1014 SAMTools SNP 155965 155965 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.3%2C0.09%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1014 SAMTools SNP 155976 155976 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1014 SAMTools SNP 156894 156894 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C1%2C10%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.066%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1014 SAMTools SNP 156896 156896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1014 SAMTools SNP 156948 156948 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.026%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1014 SAMTools SNP 157092 157092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1014 SAMTools SNP 158940 158940 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1014 SAMTools SNP 161062 161062 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.12%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1014 SAMTools SNP 161104 161104 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0142%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.026%2C0.00013%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1014 SAMTools SNP 161662 161662 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 161665 161665 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 161695 161695 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 164539 164539 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C41:44 scaffold1014 SAMTools SNP 164610 164610 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1014 SAMTools SNP 164905 164905 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1014 SAMTools SNP 164977 164977 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1014 SAMTools SNP 166319 166319 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1014 SAMTools SNP 166628 166628 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1014 SAMTools SNP 172801 172801 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C0.049%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C216:61 scaffold1014 SAMTools SNP 172807 172807 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.043%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1014 SAMTools SNP 172923 172923 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C242:44 scaffold1014 SAMTools SNP 173871 173871 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1014 SAMTools SNP 173928 173928 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1014 SAMTools SNP 174434 174434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1014 SAMTools SNP 176467 176467 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1014 SAMTools SNP 177658 177658 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1014 SAMTools SNP 178538 178538 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1014 SAMTools SNP 178555 178555 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1014 SAMTools SNP 180160 180160 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 181439 181439 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0025%2C0.24%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1014 SAMTools SNP 181465 181465 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1014 SAMTools SNP 181467 181467 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0088%2C0.12%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1014 SAMTools SNP 181532 181532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C7.6e-34%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 182223 182223 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C18%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.49%2C1.5e-32%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1014 SAMTools SNP 183464 183464 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C33%2C0:63 scaffold1014 SAMTools SNP 184048 184048 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1014 SAMTools SNP 186696 186696 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0004%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1014 SAMTools SNP 186757 186757 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1014 SAMTools SNP 187389 187389 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00057%2C2.6e-06%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C249:94 scaffold1014 SAMTools SNP 189246 189246 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1014 SAMTools SNP 189261 189261 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 190392 190392 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1014 SAMTools SNP 191957 191957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1014 SAMTools SNP 191993 191993 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1014 SAMTools SNP 192007 192007 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1014 SAMTools SNP 192445 192445 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1014 SAMTools SNP 192688 192688 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.31%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1014 SAMTools SNP 192702 192702 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C0.12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1014 SAMTools SNP 192727 192727 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C230:99 scaffold1014 SAMTools SNP 192748 192748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1014 SAMTools SNP 193130 193130 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold1014 SAMTools SNP 193272 193272 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0.053%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1014 SAMTools SNP 193328 193328 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 193473 193473 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 193926 193926 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1014 SAMTools SNP 193955 193955 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold1014 SAMTools SNP 194314 194314 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.15%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C147:99 scaffold1014 SAMTools SNP 194386 194386 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold1014 SAMTools SNP 194392 194392 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C208:99 scaffold1014 SAMTools SNP 196704 196704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1014 SAMTools SNP 196748 196748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1014 SAMTools SNP 197536 197536 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C0.0081%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1014 SAMTools SNP 197542 197542 90 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.35%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1014 SAMTools SNP 197555 197555 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.19%2C4.4e-07%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1014 SAMTools SNP 198010 198010 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 198021 198021 78.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold1014 SAMTools SNP 198153 198153 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 198174 198174 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.31%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1014 SAMTools SNP 198514 198514 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C237:99 scaffold1014 SAMTools SNP 198526 198526 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1014 SAMTools SNP 198749 198749 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1014 SAMTools SNP 201706 201706 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.28%3BPV4%3D1%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C42:34 scaffold1014 SAMTools SNP 207604 207604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1014 SAMTools SNP 208578 208578 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 208752 208752 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1014 SAMTools SNP 208887 208887 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1014 SAMTools SNP 209709 209709 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1014 SAMTools SNP 209838 209838 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1014 SAMTools SNP 214626 214626 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1014 SAMTools SNP 214838 214838 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.41%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1014 SAMTools SNP 215114 215114 32.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1014 SAMTools SNP 215514 215514 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 217286 217286 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1014 SAMTools SNP 217319 217319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 226621 226621 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1014 SAMTools SNP 300866 300866 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1014 SAMTools SNP 308085 308085 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.66%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1014 SAMTools SNP 311728 311728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 311739 311739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1014 SAMTools SNP 312616 312616 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1014 SAMTools SNP 323893 323893 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 324027 324027 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 349270 349270 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1014 SAMTools SNP 349545 349545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1014 SAMTools SNP 349547 349547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C29%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1014 SAMTools SNP 354450 354450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1014 SAMTools SNP 354496 354496 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D1%2C0.26%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C221:54 scaffold1014 SAMTools SNP 365835 365835 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1014 SAMTools SNP 384169 384169 9.08 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1014 SAMTools SNP 385082 385082 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.03%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1014 SAMTools SNP 385482 385482 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold1014 SAMTools SNP 385495 385495 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C3e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C74:77 scaffold1014 SAMTools SNP 385547 385547 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C6.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold1014 SAMTools SNP 388452 388452 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D46%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C96%2C0:99 scaffold1014 SAMTools SNP 388570 388570 73.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold1014 SAMTools SNP 411549 411549 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1014 SAMTools SNP 488982 488982 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1014 SAMTools SNP 490162 490162 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1014 SAMTools SNP 506847 506847 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1014 SAMTools SNP 506896 506896 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1014 SAMTools SNP 509802 509802 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1014 SAMTools SNP 513444 513444 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1014 SAMTools SNP 580430 580430 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 580441 580441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 580537 580537 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C41:44 scaffold1014 SAMTools SNP 580600 580600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1014 SAMTools SNP 580947 580947 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1014 SAMTools SNP 580976 580976 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.6%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1014 SAMTools SNP 581021 581021 55.8 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1014 SAMTools SNP 581074 581074 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1014 SAMTools SNP 581840 581840 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1014 SAMTools SNP 581852 581852 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 582512 582512 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1014 SAMTools SNP 582518 582518 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 583002 583002 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 583356 583356 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 601226 601226 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1014 SAMTools SNP 601745 601745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1014 SAMTools SNP 602279 602279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1014 SAMTools SNP 602327 602327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C59%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1014 SAMTools SNP 602663 602663 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1014 SAMTools SNP 607417 607417 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1014 SAMTools SNP 608052 608052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 608060 608060 31.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1014 SAMTools SNP 608673 608673 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1014 SAMTools SNP 610917 610917 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 610925 610925 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1014 SAMTools SNP 617742 617742 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1014 SAMTools SNP 643022 643022 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1014 SAMTools SNP 643070 643070 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1014 SAMTools SNP 643470 643470 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 998 998 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1044 1044 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1115 1115 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1140 1140 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 1684 1684 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1016 SAMTools SNP 2603 2603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1016 SAMTools SNP 3965 3965 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1016 SAMTools SNP 3986 3986 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1016 SAMTools SNP 4041 4041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.052%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 4349 4349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1016 SAMTools SNP 4831 4831 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1016 SAMTools SNP 4843 4843 69.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold1016 SAMTools SNP 4878 4878 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1016 SAMTools SNP 4900 4900 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C224:99 scaffold1016 SAMTools SNP 4921 4921 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.42%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C222:99 scaffold1016 SAMTools SNP 5157 5157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.51%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1016 SAMTools SNP 5551 5551 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1016 SAMTools SNP 6138 6138 49.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1016 SAMTools SNP 6585 6585 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1016 SAMTools SNP 6987 6987 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1016 SAMTools SNP 9771 9771 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold1016 SAMTools SNP 9778 9778 7.79 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-67;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C215%2C255%2C0%2C247:44 scaffold1016 SAMTools SNP 11970 11970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C15%2C89%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 12066 12066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C121%2C17%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 15166 15166 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C12%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.32%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1016 SAMTools SNP 15992 15992 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1016 SAMTools SNP 28327 28327 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1016 SAMTools SNP 30318 30318 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 30366 30366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 33138 33138 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold1016 SAMTools SNP 33159 33159 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C124:99 scaffold1016 SAMTools SNP 145580 145580 40.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1016 SAMTools SNP 152016 152016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 153956 153956 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1016 SAMTools SNP 154575 154575 205 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C30%2C9%2C226%2C0%2C223:39 scaffold1016 SAMTools SNP 154587 154587 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1016 SAMTools SNP 167050 167050 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1016 SAMTools SNP 167906 167906 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 169177 169177 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C40:43 scaffold1016 SAMTools SNP 182197 182197 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1016 SAMTools SNP 182236 182236 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C24%2C0:38 scaffold1016 SAMTools SNP 182596 182596 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D0.33%2C0.048%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold1016 SAMTools SNP 182621 182621 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C38:41 scaffold1016 SAMTools SNP 182677 182677 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1016 SAMTools SNP 183070 183070 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D5.33%3BPV4%3D0.33%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C32:34 scaffold1016 SAMTools SNP 183243 183243 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1016 SAMTools SNP 183504 183504 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D6.96%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C33:36 scaffold1016 SAMTools SNP 183881 183881 24.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1016 SAMTools SNP 228203 228203 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1016 SAMTools SNP 239222 239222 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1016 SAMTools SNP 269501 269501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 272602 272602 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1016 SAMTools SNP 273723 273723 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.12%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1016 SAMTools SNP 273781 273781 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1016 SAMTools SNP 429483 429483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1016 SAMTools SNP 432406 432406 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1016 SAMTools SNP 432415 432415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 433374 433374 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1016 SAMTools SNP 433659 433659 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C9%2C1%3BMQ%3D42%3BFQ%3D20.1%3BPV4%3D1%2C9.5e-19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C178:50 scaffold1016 SAMTools SNP 434210 434210 75.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold1016 SAMTools SNP 434850 434850 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C253:44 scaffold1016 SAMTools SNP 434880 434880 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C0%3BMQ%3D44%3BFQ%3D21%3BPV4%3D1%2C1%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1016 SAMTools SNP 434896 434896 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C7%2C1%3BMQ%3D46%3BFQ%3D39%3BPV4%3D0.22%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C228:69 scaffold1016 SAMTools SNP 434994 434994 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C17%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.0031%2C1.2e-35%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1016 SAMTools SNP 435045 435045 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1016 SAMTools SNP 435360 435360 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1016 SAMTools SNP 435371 435371 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C111:77 scaffold1016 SAMTools SNP 435378 435378 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D37%3BFQ%3D39%3BPV4%3D1%2C1%2C0.097%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C66:69 scaffold1016 SAMTools SNP 435384 435384 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D38%3BFQ%3D28%3BPV4%3D1%2C0.07%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C149:58 scaffold1016 SAMTools SNP 436774 436774 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C8%3BMQ%3D45%3BFQ%3D109%3BPV4%3D1%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C233:99 scaffold1016 SAMTools SNP 436803 436803 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C226:44 scaffold1016 SAMTools SNP 438817 438817 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 438818 438818 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 439004 439004 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1016 SAMTools SNP 439041 439041 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1016 SAMTools SNP 443548 443548 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold1016 SAMTools SNP 443869 443869 25.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1016 SAMTools SNP 462034 462034 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1017 SAMTools SNP 2155 2155 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 2243 2243 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1017 SAMTools SNP 11434 11434 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold1017 SAMTools SNP 17816 17816 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1017 SAMTools SNP 19197 19197 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C6%2C0%3BMQ%3D48%3BFQ%3D43%3BPV4%3D0.3%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1017 SAMTools SNP 19251 19251 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C7%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 19305 19305 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1017 SAMTools SNP 24279 24279 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C3%2C46%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.26%2C0.017%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1017 SAMTools SNP 24292 24292 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C36%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1017 SAMTools SNP 24322 24322 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C25%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1017 SAMTools SNP 24360 24360 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1017 SAMTools SNP 28845 28845 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1017 SAMTools SNP 29089 29089 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.59%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C231:53 scaffold1017 SAMTools SNP 29190 29190 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 29514 29514 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C134:51 scaffold1017 SAMTools SNP 29586 29586 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 31876 31876 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C32:35 scaffold1017 SAMTools SNP 46291 46291 56.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold1017 SAMTools SNP 46471 46471 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1017 SAMTools SNP 52389 52389 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 61321 61321 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1017 SAMTools SNP 61323 61323 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1017 SAMTools SNP 62259 62259 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 62463 62463 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 80365 80365 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C13%2C72%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.84%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 80557 80557 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C11%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.46%2C9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1017 SAMTools SNP 94855 94855 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C5%3BMQ%3D45%3BFQ%3D219%3BPV4%3D0.42%2C0.069%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1017 SAMTools SNP 97065 97065 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C26%2C19%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C5.1e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1017 SAMTools SNP 97968 97968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C121%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.018%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 98007 98007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C92%2C129%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.48%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 100267 100267 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D1%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C99%2C0:63 scaffold1017 SAMTools SNP 100767 100767 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C290%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 100820 100820 17.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0%2C48%2C1%2C45:6 scaffold1017 SAMTools SNP 101557 101557 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C76%2C3%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.4%2C0.0086%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1017 SAMTools SNP 102047 102047 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C48%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102050 102050 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C16%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102082 102082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C22%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102138 102138 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C15%2C49%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 102575 102575 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 106264 106264 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C17%2C62%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107006 107006 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C62%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107075 107075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C18%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 107090 107090 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 107481 107481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C19%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1017 SAMTools SNP 108151 108151 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 109033 109033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 109484 109484 101 . . REF=T;ALT=A,G,C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0%2C119%2C4%2C116%2C129%2C14%2C110%2C126:57 scaffold1017 SAMTools SNP 109910 109910 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1017 SAMTools SNP 111514 111514 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 111548 111548 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 111561 111561 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 112506 112506 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C5%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1017 SAMTools SNP 112522 112522 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C17%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.2%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 112884 112884 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 113317 113317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1017 SAMTools SNP 113323 113323 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C12%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0019%2C0.36%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 113677 113677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C41%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1017 SAMTools SNP 113794 113794 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C64:67 scaffold1017 SAMTools SNP 114123 114123 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 114176 114176 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1017 SAMTools SNP 114225 114225 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C12%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1017 SAMTools SNP 114246 114246 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C10%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 114991 114991 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C5%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.4%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 115033 115033 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.038%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 116067 116067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 116137 116137 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.66%2C3.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 116241 116241 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 124146 124146 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C79%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C255%2C0:99 scaffold1017 SAMTools SNP 124728 124728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D48%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1017 SAMTools SNP 126648 126648 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D26%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0017%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 128054 128054 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C19%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D3.1e-06%2C2.8e-11%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1017 SAMTools SNP 128072 128072 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C9%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0016%2C9.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1017 SAMTools SNP 128289 128289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.066%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 131731 131731 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1017 SAMTools SNP 132689 132689 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C16%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1017 SAMTools SNP 144003 144003 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C0%2C10%3BMQ%3D41%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C213:99 scaffold1017 SAMTools SNP 144221 144221 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C7%3BMQ%3D32%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C194:55 scaffold1017 SAMTools SNP 147573 147573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 147636 147636 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 147660 147660 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.6e-09%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C198:59 scaffold1017 SAMTools SNP 148214 148214 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C240:82 scaffold1017 SAMTools SNP 153028 153028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 153304 153304 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 154849 154849 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.57%2C9.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1017 SAMTools SNP 155038 155038 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.39%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1017 SAMTools SNP 156815 156815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 157405 157405 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 158662 158662 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C2%2C13%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1017 SAMTools SNP 158670 158670 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1017 SAMTools SNP 158719 158719 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1017 SAMTools SNP 159048 159048 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1017 SAMTools SNP 162125 162125 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1017 SAMTools SNP 162667 162667 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 162668 162668 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 162690 162690 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1017 SAMTools SNP 163077 163077 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 163082 163082 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 163793 163793 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1017 SAMTools SNP 167793 167793 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 167799 167799 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C5%2C22%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.062%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1017 SAMTools SNP 168032 168032 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C37%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 168418 168418 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C5%3BMQ%3D42%3BFQ%3D14.2%3BPV4%3D0.055%2C0.47%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C252:43 scaffold1017 SAMTools SNP 179514 179514 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C160%2C0:99 scaffold1017 SAMTools SNP 179564 179564 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C151%2C0:99 scaffold1017 SAMTools SNP 179823 179823 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C218:57 scaffold1017 SAMTools SNP 179892 179892 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.26%2C1.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C227:99 scaffold1017 SAMTools SNP 180400 180400 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.17%2C6e-21%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1017 SAMTools SNP 181715 181715 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 182129 182129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186115 186115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186331 186331 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 186934 186934 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1017 SAMTools SNP 186935 186935 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1017 SAMTools SNP 186936 186936 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.22%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1017 SAMTools SNP 186950 186950 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 187000 187000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 187239 187239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C17%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1017 SAMTools SNP 187953 187953 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 187964 187964 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.32%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C251:54 scaffold1017 SAMTools SNP 188175 188175 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold1017 SAMTools SNP 188372 188372 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1017 SAMTools SNP 188460 188460 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.56%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C246:99 scaffold1017 SAMTools SNP 188681 188681 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1017 SAMTools SNP 188682 188682 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C10%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.001%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1017 SAMTools SNP 188862 188862 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C27%2C0:51 scaffold1017 SAMTools SNP 189516 189516 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.2%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C29:32 scaffold1017 SAMTools SNP 189781 189781 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.22%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1017 SAMTools SNP 190132 190132 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C8%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.71%2C8.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1017 SAMTools SNP 190391 190391 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C54%2C0:99 scaffold1017 SAMTools SNP 190478 190478 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C120%2C0:99 scaffold1017 SAMTools SNP 190517 190517 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C63%2C0:99 scaffold1017 SAMTools SNP 190586 190586 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 190595 190595 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 190799 190799 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 191113 191113 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 191719 191719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 191722 191722 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 192150 192150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 205765 205765 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D28%3BFQ%3D23%3BPV4%3D1%2C0.22%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C50:53 scaffold1017 SAMTools SNP 205920 205920 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 205970 205970 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1017 SAMTools SNP 206497 206497 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 213010 213010 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold1017 SAMTools SNP 213040 213040 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 213691 213691 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.48%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 213721 213721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214081 214081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214087 214087 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214265 214265 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.27%2C0.0011%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1017 SAMTools SNP 214285 214285 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 214642 214642 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.45%2C0.19%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 214653 214653 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 214739 214739 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 214965 214965 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1017 SAMTools SNP 215025 215025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 215468 215468 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 215495 215495 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.15%2C0.025%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1017 SAMTools SNP 215591 215591 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1017 SAMTools SNP 215955 215955 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.37%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C190:99 scaffold1017 SAMTools SNP 215975 215975 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 215994 215994 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 216620 216620 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 216650 216650 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C36%2C0:69 scaffold1017 SAMTools SNP 216699 216699 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1017 SAMTools SNP 216722 216722 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.2%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold1017 SAMTools SNP 217155 217155 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 219638 219638 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 219653 219653 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 220038 220038 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1017 SAMTools SNP 220075 220075 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 220089 220089 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0071%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C228:99 scaffold1017 SAMTools SNP 220136 220136 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1017 SAMTools SNP 220161 220161 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1017 SAMTools SNP 220191 220191 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1017 SAMTools SNP 220200 220200 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1017 SAMTools SNP 221452 221452 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 221820 221820 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1017 SAMTools SNP 222209 222209 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C7:10 scaffold1017 SAMTools SNP 222303 222303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1017 SAMTools SNP 222575 222575 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 222586 222586 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 223028 223028 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 223061 223061 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1017 SAMTools SNP 223103 223103 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1017 SAMTools SNP 223353 223353 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 223357 223357 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 223461 223461 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 223656 223656 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 223710 223710 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1017 SAMTools SNP 224394 224394 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1017 SAMTools SNP 224457 224457 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1017 SAMTools SNP 224469 224469 49.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1017 SAMTools SNP 224502 224502 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.028%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C53:56 scaffold1017 SAMTools SNP 224523 224523 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.05%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C10%2C0:17 scaffold1017 SAMTools SNP 225037 225037 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C72%2C0:99 scaffold1017 SAMTools SNP 226032 226032 43.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1017 SAMTools SNP 226386 226386 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C226:99 scaffold1017 SAMTools SNP 226410 226410 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1017 SAMTools SNP 226640 226640 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.007%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1017 SAMTools SNP 226693 226693 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1017 SAMTools SNP 226831 226831 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 227314 227314 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.063%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 227326 227326 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1017 SAMTools SNP 227589 227589 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1017 SAMTools SNP 227598 227598 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C9%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.77%2C1.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 227616 227616 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.37%2C0.096%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1017 SAMTools SNP 227779 227779 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C17%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1017 SAMTools SNP 227931 227931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1017 SAMTools SNP 227972 227972 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1017 SAMTools SNP 227978 227978 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 227990 227990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 228008 228008 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 228350 228350 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 228443 228443 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold1017 SAMTools SNP 228637 228637 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 228640 228640 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 228646 228646 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1017 SAMTools SNP 228685 228685 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 228697 228697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 228889 228889 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 228910 228910 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C21%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.78%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1017 SAMTools SNP 228943 228943 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C6%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.21%2C6.3e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 228982 228982 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1017 SAMTools SNP 229344 229344 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.54%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1017 SAMTools SNP 229359 229359 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.43%2C0.21%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C134:99 scaffold1017 SAMTools SNP 229383 229383 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1017 SAMTools SNP 229784 229784 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 229808 229808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1017 SAMTools SNP 229904 229904 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1017 SAMTools SNP 230250 230250 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C30:33 scaffold1017 SAMTools SNP 230254 230254 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1017 SAMTools SNP 230272 230272 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold1017 SAMTools SNP 231176 231176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1017 SAMTools SNP 231227 231227 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C4%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1017 SAMTools SNP 231564 231564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 231598 231598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C8%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D7.8e-05%2C0.012%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1017 SAMTools SNP 232058 232058 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 232067 232067 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 232142 232142 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 234709 234709 34.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold1017 SAMTools SNP 234763 234763 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1017 SAMTools SNP 234772 234772 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C174:99 scaffold1017 SAMTools SNP 235012 235012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 235225 235225 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1017 SAMTools SNP 235234 235234 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold1017 SAMTools SNP 235243 235243 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.049%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1017 SAMTools SNP 235255 235255 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 235560 235560 156 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66%2C197%2C0%2C191:39 scaffold1017 SAMTools SNP 235769 235769 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.2%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1017 SAMTools SNP 235790 235790 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 235793 235793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 235954 235954 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1017 SAMTools SNP 236026 236026 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold1017 SAMTools SNP 236269 236269 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1017 SAMTools SNP 236320 236320 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1017 SAMTools SNP 236383 236383 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1017 SAMTools SNP 236393 236393 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1017 SAMTools SNP 236728 236728 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C21%2C0:39 scaffold1017 SAMTools SNP 236749 236749 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1017 SAMTools SNP 236852 236852 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 236863 236863 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1017 SAMTools SNP 236866 236866 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold1017 SAMTools SNP 237618 237618 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1017 SAMTools SNP 237876 237876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 237891 237891 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 238234 238234 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 238255 238255 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 238667 238667 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.24%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold1017 SAMTools SNP 238670 238670 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1017 SAMTools SNP 239017 239017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1017 SAMTools SNP 239090 239090 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.0023%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1017 SAMTools SNP 239119 239119 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1017 SAMTools SNP 239510 239510 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1017 SAMTools SNP 239516 239516 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 239582 239582 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C202:99 scaffold1017 SAMTools SNP 239811 239811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C17%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.15%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1017 SAMTools SNP 240171 240171 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold1017 SAMTools SNP 240215 240215 96.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold1017 SAMTools SNP 240252 240252 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1017 SAMTools SNP 240532 240532 60 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C213%2C162%2C255%2C0%2C241:98 scaffold1017 SAMTools SNP 240929 240929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1017 SAMTools SNP 241314 241314 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C9:12 scaffold1017 SAMTools SNP 241359 241359 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1017 SAMTools SNP 241398 241398 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1017 SAMTools SNP 241695 241695 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 241742 241742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 241745 241745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 244859 244859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 245215 245215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C18%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1017 SAMTools SNP 249565 249565 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 253637 253637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 253641 253641 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 253960 253960 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1017 SAMTools SNP 254551 254551 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 254939 254939 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 256125 256125 80.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold1017 SAMTools SNP 256170 256170 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.38%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C170:99 scaffold1017 SAMTools SNP 256191 256191 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 256480 256480 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold1017 SAMTools SNP 256543 256543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 256657 256657 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 256768 256768 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C75%2C0:99 scaffold1017 SAMTools SNP 256811 256811 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold1017 SAMTools SNP 257027 257027 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C20%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.53%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold1017 SAMTools SNP 257028 257028 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.53%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1017 SAMTools SNP 257052 257052 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold1017 SAMTools SNP 257410 257410 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 258124 258124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 258430 258430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 259365 259365 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1017 SAMTools SNP 259374 259374 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.65%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1017 SAMTools SNP 260758 260758 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C18%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C33:36 scaffold1017 SAMTools SNP 260776 260776 222 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0%2C247%2C31%2C244:99 scaffold1017 SAMTools SNP 260779 260779 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.41%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1017 SAMTools SNP 261384 261384 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1017 SAMTools SNP 261387 261387 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1017 SAMTools SNP 261516 261516 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C21:24 scaffold1017 SAMTools SNP 261872 261872 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 261895 261895 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1017 SAMTools SNP 261926 261926 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 261983 261983 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1017 SAMTools SNP 265899 265899 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1017 SAMTools SNP 267311 267311 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1017 SAMTools SNP 267377 267377 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 267401 267401 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0:63 scaffold1017 SAMTools SNP 267410 267410 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.15%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1017 SAMTools SNP 267464 267464 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 268512 268512 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1017 SAMTools SNP 268560 268560 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1017 SAMTools SNP 268623 268623 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0063%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C3.2e-05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1017 SAMTools SNP 268644 268644 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 268653 268653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 268972 268972 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 270073 270073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1017 SAMTools SNP 270085 270085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1017 SAMTools SNP 270175 270175 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C126%2C0:99 scaffold1017 SAMTools SNP 270229 270229 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1017 SAMTools SNP 270568 270568 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 271132 271132 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 271150 271150 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1017 SAMTools SNP 271361 271361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 271364 271364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1017 SAMTools SNP 272363 272363 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1017 SAMTools SNP 272369 272369 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1017 SAMTools SNP 272880 272880 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.59%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1017 SAMTools SNP 273353 273353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 273689 273689 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 273751 273751 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C10%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0017%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1017 SAMTools SNP 274269 274269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 275660 275660 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C25%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D0.49%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold1017 SAMTools SNP 275714 275714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1017 SAMTools SNP 276347 276347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C4%2C268%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D3e-26%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 276376 276376 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C269%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 276392 276392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1017 SAMTools SNP 276595 276595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 276615 276615 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C18%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C68:71 scaffold1017 SAMTools SNP 279067 279067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1017 SAMTools SNP 279109 279109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C15%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 282568 282568 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C41%2C8%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D6e-05%2C0.24%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1017 SAMTools SNP 282574 282574 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.00016%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 282586 282586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C15%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold1017 SAMTools SNP 282607 282607 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C13%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.29%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1017 SAMTools SNP 282677 282677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1017 SAMTools SNP 283133 283133 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C4%3BMQ%3D46%3BFQ%3D131%3BPV4%3D0.0016%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C210:99 scaffold1017 SAMTools SNP 283157 283157 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1017 SAMTools SNP 283169 283169 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C39%2C0:75 scaffold1017 SAMTools SNP 283247 283247 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1017 SAMTools SNP 283250 283250 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C0%3BMQ%3D47%3BFQ%3D55%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 284209 284209 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 284314 284314 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C33%2C0:63 scaffold1017 SAMTools SNP 285855 285855 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C27%2C22%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 286034 286034 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C34%2C11%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.094%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1017 SAMTools SNP 286181 286181 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C58%2C7%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.056%2C4e-08%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1017 SAMTools SNP 286652 286652 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C54%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 286671 286671 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 288900 288900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 290059 290059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C19%2C15%3BMQ%3D49%3BFQ%3D24%3BPV4%3D0.14%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1017 SAMTools SNP 290095 290095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1017 SAMTools SNP 292799 292799 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0011%2C2.1e-08%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1017 SAMTools SNP 292805 292805 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.58%2C0.074%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1017 SAMTools SNP 293143 293143 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 293160 293160 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C59:62 scaffold1017 SAMTools SNP 293251 293251 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C217:99 scaffold1017 SAMTools SNP 298225 298225 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 299017 299017 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 299376 299376 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1017 SAMTools SNP 299724 299724 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 299745 299745 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 300125 300125 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 300128 300128 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 300923 300923 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1017 SAMTools SNP 301846 301846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.011%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1017 SAMTools SNP 304063 304063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 304090 304090 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C232:99 scaffold1017 SAMTools SNP 304116 304116 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1017 SAMTools SNP 304579 304579 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 312204 312204 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 312243 312243 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 312255 312255 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 312674 312674 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 312677 312677 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 315625 315625 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 315631 315631 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1017 SAMTools SNP 315649 315649 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 318059 318059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318114 318114 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D67.8%3BPV4%3D0.17%2C0.24%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C109:98 scaffold1017 SAMTools SNP 318245 318245 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318249 318249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318560 318560 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C20%2C53%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.053%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1017 SAMTools SNP 318802 318802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C20%2C74%2C140%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318832 318832 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C100%2C37%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 318892 318892 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C144%2C12%2C14%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1017 SAMTools SNP 318943 318943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C68%2C27%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319114 319114 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C62%2C2%2C29%3BMQ%3D50%3BFQ%3D143%3BPV4%3D3.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1017 SAMTools SNP 319144 319144 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C62%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319625 319625 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 319631 319631 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 319649 319649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 319659 319659 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 319836 319836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C8%2C136%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 319929 319929 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C142%2C43%2C173%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 320485 320485 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C80%2C2%2C68%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1.1e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 323698 323698 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1017 SAMTools SNP 325335 325335 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 325815 325815 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 325962 325962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 326143 326143 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.015%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 326451 326451 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 326597 326597 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C173:99 scaffold1017 SAMTools SNP 326602 326602 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1017 SAMTools SNP 326639 326639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.56%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1017 SAMTools SNP 326851 326851 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 327139 327139 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.23%2C0.22%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1017 SAMTools SNP 327243 327243 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1017 SAMTools SNP 327334 327334 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1017 SAMTools SNP 327367 327367 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C166:99 scaffold1017 SAMTools SNP 327382 327382 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C188:99 scaffold1017 SAMTools SNP 327603 327603 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C160:99 scaffold1017 SAMTools SNP 327609 327609 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 327621 327621 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.2%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C226:59 scaffold1017 SAMTools SNP 327630 327630 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C79:82 scaffold1017 SAMTools SNP 327651 327651 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold1017 SAMTools SNP 328050 328050 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 328194 328194 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 328203 328203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 328435 328435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1017 SAMTools SNP 328453 328453 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C37%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0013%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1017 SAMTools SNP 328592 328592 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C37%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1017 SAMTools SNP 328856 328856 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C114%2C0:99 scaffold1017 SAMTools SNP 329630 329630 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1017 SAMTools SNP 333953 333953 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1017 SAMTools SNP 333967 333967 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C244:99 scaffold1017 SAMTools SNP 333991 333991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C315%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 338656 338656 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold1017 SAMTools SNP 338992 338992 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D891%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C26%2C0:49 scaffold1017 SAMTools SNP 339067 339067 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D855%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0026%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C32:35 scaffold1017 SAMTools SNP 339100 339100 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1200%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C60%2C0:99 scaffold1017 SAMTools SNP 339184 339184 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1384%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C1145%2C186%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.2e-36%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 339208 339208 62 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D1651%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C53%2C6%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C7e-19%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C108%2C0%2C64%2C60%2C80:99 scaffold1017 SAMTools SNP 339238 339238 59.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2344%3BVDB%3D0.0057%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.18%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C7:10 scaffold1017 SAMTools SNP 339442 339442 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D822%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold1017 SAMTools SNP 340227 340227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C67%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 340240 340240 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C37%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 341458 341458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D990%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D507%2C3%2C477%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.053%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 343062 343062 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C484%2C5%2C240%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C2.3e-06%2C9.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 343077 343077 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C327%2C5%2C72%3BMQ%3D49%3BFQ%3D39%3BPV4%3D0.56%2C1%2C2.1e-12%2C1.1e-34;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1017 SAMTools SNP 343089 343089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C2%2C8%2C253%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D2.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 343131 343131 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C64%2C0%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.42%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C200:85 scaffold1017 SAMTools SNP 344058 344058 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D855%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C35%2C0:67 scaffold1017 SAMTools SNP 344182 344182 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C15%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C3.2e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1017 SAMTools SNP 356252 356252 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.09%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 356311 356311 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 365792 365792 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1017 SAMTools SNP 365990 365990 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C62%2C79%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1.6e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 366112 366112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 366639 366639 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1017 SAMTools SNP 366722 366722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1017 SAMTools SNP 370840 370840 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C56%2C9%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 370851 370851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C38%2C14%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 370896 370896 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C65%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372265 372265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C14%2C50%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372295 372295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C22%2C41%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372322 372322 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C32%2C60%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-09%2C0.021%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 372337 372337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 373225 373225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1017 SAMTools SNP 373263 373263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 373278 373278 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 373677 373677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C32%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1017 SAMTools SNP 373710 373710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C10%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1017 SAMTools SNP 373887 373887 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C0.072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 374938 374938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C37%2C36%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C0.048%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 377060 377060 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 377225 377225 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold1017 SAMTools SNP 377860 377860 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C16%2C35%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.35%2C3.3e-121%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1017 SAMTools SNP 378098 378098 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C111%2C61%2C101%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.49%2C1.7e-236%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1017 SAMTools SNP 378137 378137 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold1017 SAMTools SNP 378164 378164 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C0%2C42%3BMQ%3D50%3BFQ%3D26%3BPV4%3D9.7e-06%2C7.8e-19%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1017 SAMTools SNP 378425 378425 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D48%3BFQ%3D-50%3BPV4%3D1%2C0.0085%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C23%2C0:43 scaffold1017 SAMTools SNP 378847 378847 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1017 SAMTools SNP 380312 380312 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C17%2C37%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.3%2C1.5e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1017 SAMTools SNP 380689 380689 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold1017 SAMTools SNP 381799 381799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 382044 382044 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 382079 382079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 382759 382759 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1017 SAMTools SNP 383412 383412 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 384485 384485 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1017 SAMTools SNP 384575 384575 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1017 SAMTools SNP 385676 385676 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.077%2C0.34%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 386124 386124 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1017 SAMTools SNP 386924 386924 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold1017 SAMTools SNP 386993 386993 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.61%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1017 SAMTools SNP 387381 387381 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1017 SAMTools SNP 388157 388157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 388418 388418 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 388420 388420 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 389159 389159 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 389174 389174 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1017 SAMTools SNP 389249 389249 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1017 SAMTools SNP 389399 389399 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C180:99 scaffold1017 SAMTools SNP 391498 391498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1017 SAMTools SNP 391546 391546 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1017 SAMTools SNP 391801 391801 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold1017 SAMTools SNP 392245 392245 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1017 SAMTools SNP 392290 392290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0023%2C0.008%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1017 SAMTools SNP 392300 392300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 392335 392335 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold1017 SAMTools SNP 392612 392612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1017 SAMTools SNP 392937 392937 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 395026 395026 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 395041 395041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 395178 395178 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 423389 423389 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 423392 423392 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 429674 429674 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1017 SAMTools SNP 429714 429714 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1017 SAMTools SNP 429915 429915 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1017 SAMTools SNP 429933 429933 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1017 SAMTools SNP 430747 430747 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1017 SAMTools SNP 430844 430844 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1017 SAMTools SNP 431419 431419 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 431683 431683 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C5%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.39%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 431785 431785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1017 SAMTools SNP 431804 431804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.13%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433029 433029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433035 433035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 433371 433371 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.5%2C2.7e-07%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1017 SAMTools SNP 433401 433401 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 433408 433408 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1017 SAMTools SNP 446078 446078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446431 446431 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446479 446479 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.074%2C0.035%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1017 SAMTools SNP 446482 446482 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.62%2C0.066%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1017 SAMTools SNP 446703 446703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 446751 446751 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.3%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1017 SAMTools SNP 447227 447227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.14%2C0.00052%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1017 SAMTools SNP 449087 449087 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1017 SAMTools SNP 450593 450593 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 451585 451585 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1017 SAMTools SNP 451946 451946 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 451948 451948 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 452050 452050 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452290 452290 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 452324 452324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 452332 452332 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452342 452342 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 452585 452585 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 461737 461737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 461749 461749 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 461942 461942 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00064%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 462183 462183 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.13%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 462246 462246 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C3%2C6%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1017 SAMTools SNP 462264 462264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 464669 464669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C46%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 464840 464840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1017 SAMTools SNP 465273 465273 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C84%2C35%2C23%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1e-05%2C1.9e-71%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1017 SAMTools SNP 465285 465285 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C129%2C35%2C60%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00046%2C1.3e-138%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1017 SAMTools SNP 465318 465318 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C123%2C7%2C141%3BMQ%3D50%3BFQ%3D66%3BPV4%3D4.8e-06%2C3.7e-218%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1017 SAMTools SNP 465399 465399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C60%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1017 SAMTools SNP 465423 465423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 465435 465435 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C7%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0039%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1017 SAMTools SNP 465577 465577 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1017 SAMTools SNP 466269 466269 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C9.9e-06%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1017 SAMTools SNP 466272 466272 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C0:57 scaffold1017 SAMTools SNP 466305 466305 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C11%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.1%2C1.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1017 SAMTools SNP 473787 473787 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 474964 474964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1017 SAMTools SNP 474973 474973 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1017 SAMTools SNP 475066 475066 23.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1017 SAMTools SNP 475450 475450 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C51%2C0:99 scaffold1017 SAMTools SNP 475852 475852 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C30%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.51%2C4.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1017 SAMTools SNP 475906 475906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1017 SAMTools SNP 475917 475917 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 476786 476786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 477131 477131 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.36%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1017 SAMTools SNP 481490 481490 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1017 SAMTools SNP 481746 481746 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1017 SAMTools SNP 483752 483752 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 484616 484616 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 484846 484846 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1017 SAMTools SNP 484848 484848 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1017 SAMTools SNP 485230 485230 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C237:69 scaffold1017 SAMTools SNP 486300 486300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1017 SAMTools SNP 486915 486915 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 487206 487206 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1017 SAMTools SNP 487719 487719 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.67%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C251:99 scaffold1017 SAMTools SNP 487986 487986 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1017 SAMTools SNP 488275 488275 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1017 SAMTools SNP 499122 499122 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 499256 499256 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 499313 499313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 500643 500643 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1017 SAMTools SNP 500688 500688 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 500706 500706 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 502700 502700 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 507759 507759 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 508065 508065 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 508263 508263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 508322 508322 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514717 514717 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 514750 514750 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 514777 514777 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514783 514783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 514799 514799 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1017 SAMTools SNP 515071 515071 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 515548 515548 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold1017 SAMTools SNP 515575 515575 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1017 SAMTools SNP 516066 516066 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1017 SAMTools SNP 516126 516126 56.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1017 SAMTools SNP 522497 522497 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 522509 522509 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 532147 532147 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 532174 532174 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 533867 533867 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.01%2C1%2C1%2C4.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1017 SAMTools SNP 533930 533930 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C252:99 scaffold1017 SAMTools SNP 534924 534924 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 540535 540535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C22%2C32%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 540559 540559 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C6%2C71%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 542564 542564 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 542949 542949 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C27%2C44%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 543000 543000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 543305 543305 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C32%2C31%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.3e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 543532 543532 54.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1017 SAMTools SNP 544618 544618 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C30%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 545007 545007 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C3%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1017 SAMTools SNP 545019 545019 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C3%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1017 SAMTools SNP 555236 555236 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1017 SAMTools SNP 557672 557672 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C38%2C91%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.16%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1017 SAMTools SNP 559214 559214 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C45%2C48%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D3.5e-07%2C7e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1017 SAMTools SNP 559649 559649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C122%2C8%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 559688 559688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C77%2C4%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 560087 560087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 560096 560096 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1017 SAMTools SNP 560117 560117 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 560126 560126 190 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C30%2C0%2C204%2C0%2C201:57 scaffold1017 SAMTools SNP 560609 560609 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1017 SAMTools SNP 560670 560670 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C84%2C0:99 scaffold1017 SAMTools SNP 568364 568364 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.4e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1017 SAMTools SNP 568640 568640 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1017 SAMTools SNP 569712 569712 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold1017 SAMTools SNP 569718 569718 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1017 SAMTools SNP 570546 570546 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1017 SAMTools SNP 570817 570817 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.15%2C0.18%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1017 SAMTools SNP 570823 570823 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C0.14%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1017 SAMTools SNP 570847 570847 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 572909 572909 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C12%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.26%2C5.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1017 SAMTools SNP 573279 573279 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 576503 576503 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1017 SAMTools SNP 577084 577084 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1017 SAMTools SNP 577905 577905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1017 SAMTools SNP 577920 577920 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0028%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1017 SAMTools SNP 577953 577953 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1017 SAMTools SNP 577980 577980 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0025%2C0.37%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1017 SAMTools SNP 578001 578001 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C11%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.027%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1017 SAMTools SNP 578034 578034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C13%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1017 SAMTools SNP 578358 578358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C59%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1017 SAMTools SNP 578401 578401 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.23%2C1%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1017 SAMTools SNP 578403 578403 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.19%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1017 SAMTools SNP 578707 578707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1017 SAMTools SNP 579674 579674 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C72%2C7%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 580415 580415 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C60%2C44%2C58%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.23%2C1.6e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1017 SAMTools SNP 582134 582134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C405%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 587939 587939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 588329 588329 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 588370 588370 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 590844 590844 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C189:62 scaffold1017 SAMTools SNP 590852 590852 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 591893 591893 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1017 SAMTools SNP 591911 591911 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1017 SAMTools SNP 602852 602852 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 627423 627423 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 645847 645847 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1017 SAMTools SNP 646840 646840 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C227:99 scaffold1017 SAMTools SNP 647465 647465 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1017 SAMTools SNP 647638 647638 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 647657 647657 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C217:99 scaffold1017 SAMTools SNP 656302 656302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 657576 657576 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.28%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1017 SAMTools SNP 657607 657607 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 660349 660349 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 662065 662065 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 662317 662317 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 662347 662347 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1017 SAMTools SNP 664286 664286 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 702625 702625 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1017 SAMTools SNP 703602 703602 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.59%2C4.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C234:57 scaffold1017 SAMTools SNP 703677 703677 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.037%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1017 SAMTools SNP 714762 714762 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold1017 SAMTools SNP 714976 714976 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C219:53 scaffold1017 SAMTools SNP 715210 715210 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1017 SAMTools SNP 715501 715501 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1017 SAMTools SNP 734294 734294 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1017 SAMTools SNP 736104 736104 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold1017 SAMTools SNP 736137 736137 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 736139 736139 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold1017 SAMTools SNP 736479 736479 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C135:99 scaffold1017 SAMTools SNP 736959 736959 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 740855 740855 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C255%2C0:99 scaffold1017 SAMTools SNP 742629 742629 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.32%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 742900 742900 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1017 SAMTools SNP 742901 742901 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 742917 742917 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 742979 742979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 743675 743675 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1017 SAMTools SNP 743783 743783 196 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C226%2C0%2C223:39 scaffold1017 SAMTools SNP 743968 743968 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C75%2C0:99 scaffold1017 SAMTools SNP 744439 744439 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1017 SAMTools SNP 744678 744678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1017 SAMTools SNP 747568 747568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C21%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1017 SAMTools SNP 747742 747742 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1017 SAMTools SNP 747743 747743 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.26%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1017 SAMTools SNP 748314 748314 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 748923 748923 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C21%2C30%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.83%2C1.8e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1017 SAMTools SNP 749040 749040 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C63%2C35%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1.8e-16%2C1.7e-46%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1017 SAMTools SNP 749190 749190 37.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1017 SAMTools SNP 749331 749331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C51%3BMQ%3D49%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1017 SAMTools SNP 751465 751465 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752454 752454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C33%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1017 SAMTools SNP 752792 752792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C10%2C119%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C2.5e-33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752888 752888 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C103%2C1%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.46%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 752964 752964 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 753324 753324 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C70%2C16%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 754201 754201 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1017 SAMTools SNP 754219 754219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1017 SAMTools SNP 754921 754921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 754951 754951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C27%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C1%2C0.006%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 755944 755944 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C33%2C6%2C27%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0022%2C0.099%2C0.0033%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 757388 757388 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C15%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1017 SAMTools SNP 758083 758083 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C18%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.63%2C1%2C0.084%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 758530 758530 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C0%2C11%3BMQ%3D42%3BFQ%3D118%3BPV4%3D0.0038%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1017 SAMTools SNP 758584 758584 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C30%2C29%2C11%3BMQ%3D46%3BFQ%3D192%3BPV4%3D0.062%2C1%2C0.0082%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1017 SAMTools SNP 758626 758626 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C16%2C32%2C17%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 758943 758943 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C50:53 scaffold1017 SAMTools SNP 758945 758945 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C152:62 scaffold1017 SAMTools SNP 758952 758952 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.18%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C250:75 scaffold1017 SAMTools SNP 758987 758987 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C103:31 scaffold1017 SAMTools SNP 759389 759389 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C0.014%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C153:28 scaffold1017 SAMTools SNP 759394 759394 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.023%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1017 SAMTools SNP 759468 759468 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 760934 760934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 761440 761440 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D6.9e-05%2C0.00022%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1017 SAMTools SNP 762128 762128 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C14%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.19%2C0.31%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1017 SAMTools SNP 762238 762238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1017 SAMTools SNP 763870 763870 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C250:99 scaffold1017 SAMTools SNP 770540 770540 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1017 SAMTools SNP 770567 770567 196 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C230%2C0%2C227:39 scaffold1017 SAMTools SNP 770739 770739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 775987 775987 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1017 SAMTools SNP 776689 776689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 776695 776695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1017 SAMTools SNP 779128 779128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 779910 779910 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1017 SAMTools SNP 781929 781929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1017 SAMTools SNP 782025 782025 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1017 SAMTools SNP 782481 782481 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold1017 SAMTools SNP 782909 782909 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C132%2C0:99 scaffold1017 SAMTools SNP 789581 789581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1017 SAMTools SNP 790134 790134 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C0%2C8%3BMQ%3D49%3BFQ%3D66%3BPV4%3D0.036%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1017 SAMTools SNP 802589 802589 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 803452 803452 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C28%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 803503 803503 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0038%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 804836 804836 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 806850 806850 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C39%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1017 SAMTools SNP 806886 806886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C42%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1017 SAMTools SNP 809833 809833 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810534 810534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C32%2C17%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.28%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810594 810594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 810609 810609 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C2%2C14%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.61%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1017 SAMTools SNP 810630 810630 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C4%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0031%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C244:99 scaffold1017 SAMTools SNP 810814 810814 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.41%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1017 SAMTools SNP 811171 811171 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 811544 811544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C2%2C13%2C136%3BMQ%3D50%3BFQ%3D-154%3BPV4%3D5.6e-06%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C127%2C0:99 scaffold1017 SAMTools SNP 811566 811566 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.013%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1017 SAMTools SNP 811768 811768 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1017 SAMTools SNP 812132 812132 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.2%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C239:68 scaffold1017 SAMTools SNP 812164 812164 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 812949 812949 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C39%2C0:75 scaffold1017 SAMTools SNP 813512 813512 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1017 SAMTools SNP 813836 813836 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1017 SAMTools SNP 814432 814432 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold1017 SAMTools SNP 818298 818298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 819432 819432 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C249:99 scaffold1017 SAMTools SNP 821383 821383 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C17%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1017 SAMTools SNP 821577 821577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 822953 822953 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C146:99 scaffold1017 SAMTools SNP 826816 826816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 826862 826862 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1017 SAMTools SNP 828843 828843 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.011%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C88:57 scaffold1017 SAMTools SNP 846025 846025 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold1017 SAMTools SNP 846415 846415 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold1017 SAMTools SNP 847866 847866 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1017 SAMTools SNP 850763 850763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 850764 850764 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 850839 850839 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold1017 SAMTools SNP 853119 853119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1017 SAMTools SNP 853575 853575 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1017 SAMTools SNP 856824 856824 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C108%2C1%2C15%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C0.012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1017 SAMTools SNP 863969 863969 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 864002 864002 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1017 SAMTools SNP 864849 864849 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C9.6e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C206:33 scaffold1017 SAMTools SNP 916352 916352 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1017 SAMTools SNP 927912 927912 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1017 SAMTools SNP 927921 927921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1017 SAMTools SNP 931192 931192 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1017 SAMTools SNP 937146 937146 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1017 SAMTools SNP 937389 937389 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1017 SAMTools SNP 941372 941372 18.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1017 SAMTools SNP 952888 952888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C13%3BMQ%3D47%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1017 SAMTools SNP 954745 954745 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.67%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1017 SAMTools SNP 958464 958464 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.48%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1017 SAMTools SNP 959868 959868 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C30%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1017 SAMTools SNP 960289 960289 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1017 SAMTools SNP 964364 964364 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.36%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1017 SAMTools SNP 965805 965805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1017 SAMTools SNP 974858 974858 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1017 SAMTools SNP 974897 974897 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1017 SAMTools SNP 976738 976738 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1017 SAMTools SNP 982040 982040 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1017 SAMTools SNP 1002531 1002531 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1017 SAMTools SNP 1005545 1005545 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1017 SAMTools SNP 1021084 1021084 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00023%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C198:49 scaffold1017 SAMTools SNP 1022765 1022765 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1017 SAMTools SNP 1022801 1022801 99.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold1018 SAMTools SNP 1412 1412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 2457 2457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1018 SAMTools SNP 108807 108807 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1018 SAMTools SNP 113626 113626 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C68%2C1%2C50%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C2.8e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1018 SAMTools SNP 114095 114095 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C136:47 scaffold1018 SAMTools SNP 115474 115474 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1018 SAMTools SNP 117080 117080 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1018 SAMTools SNP 117836 117836 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1018 SAMTools SNP 117837 117837 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1018 SAMTools SNP 117904 117904 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 118672 118672 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C6.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 119253 119253 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C19%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.027%2C1.1e-09%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1018 SAMTools SNP 119476 119476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 122028 122028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 122035 122035 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1018 SAMTools SNP 127533 127533 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C87%2C0:99 scaffold1018 SAMTools SNP 127669 127669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C53%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 127879 127879 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 128681 128681 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1018 SAMTools SNP 130286 130286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C96%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 131663 131663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 131723 131723 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1018 SAMTools SNP 132229 132229 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 132344 132344 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C81%2C9%2C108%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.8%2C9.8e-148%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1018 SAMTools SNP 133061 133061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 134505 134505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 134688 134688 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1018 SAMTools SNP 134733 134733 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C35%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1018 SAMTools SNP 134908 134908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 135305 135305 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1018 SAMTools SNP 135324 135324 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 135346 135346 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 135893 135893 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 136102 136102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C51%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.00025%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 136114 136114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C52%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 136333 136333 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1018 SAMTools SNP 136348 136348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C23%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1018 SAMTools SNP 136831 136831 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 136900 136900 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1018 SAMTools SNP 137011 137011 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.29%2C1.2e-32%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1018 SAMTools SNP 137020 137020 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C27%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C3.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1018 SAMTools SNP 137056 137056 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold1018 SAMTools SNP 137158 137158 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1018 SAMTools SNP 137523 137523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1018 SAMTools SNP 137577 137577 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1018 SAMTools SNP 137848 137848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 138178 138178 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 138208 138208 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1018 SAMTools SNP 138246 138246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C25%2C20%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1018 SAMTools SNP 138331 138331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 138497 138497 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1e-06%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 138524 138524 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0064%2C0.014%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1018 SAMTools SNP 138527 138527 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.088%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C175:99 scaffold1018 SAMTools SNP 138707 138707 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00084%2C1.1e-05%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1018 SAMTools SNP 139117 139117 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 139144 139144 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1018 SAMTools SNP 139386 139386 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1018 SAMTools SNP 139795 139795 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 139990 139990 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1018 SAMTools SNP 140220 140220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1018 SAMTools SNP 140223 140223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1018 SAMTools SNP 140479 140479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1018 SAMTools SNP 140510 140510 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold1018 SAMTools SNP 140570 140570 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C10%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1018 SAMTools SNP 140860 140860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C12%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1018 SAMTools SNP 140881 140881 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C15%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1018 SAMTools SNP 141331 141331 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1018 SAMTools SNP 141452 141452 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1018 SAMTools SNP 142436 142436 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1018 SAMTools SNP 143369 143369 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1018 SAMTools SNP 143429 143429 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 143453 143453 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1018 SAMTools SNP 143456 143456 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1018 SAMTools SNP 143477 143477 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1018 SAMTools SNP 143776 143776 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 145083 145083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.029%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1018 SAMTools SNP 145705 145705 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0052%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.055%2C0.13%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1018 SAMTools SNP 145935 145935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1018 SAMTools SNP 146016 146016 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C5%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C196%2C0:99 scaffold1018 SAMTools SNP 146214 146214 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C9%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.075%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1018 SAMTools SNP 146359 146359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C24%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1018 SAMTools SNP 146569 146569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 147305 147305 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.7e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1018 SAMTools SNP 147347 147347 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.33%2C0.14%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1018 SAMTools SNP 150506 150506 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1018 SAMTools SNP 150552 150552 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1018 SAMTools SNP 151765 151765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 151774 151774 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1018 SAMTools SNP 151795 151795 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 153723 153723 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 153777 153777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 155337 155337 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1018 SAMTools SNP 157743 157743 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C214:99 scaffold1018 SAMTools SNP 157836 157836 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1018 SAMTools SNP 157887 157887 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1018 SAMTools SNP 158309 158309 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.021%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C213:99 scaffold1018 SAMTools SNP 158628 158628 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1018 SAMTools SNP 166757 166757 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1018 SAMTools SNP 168796 168796 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold1018 SAMTools SNP 172113 172113 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1018 SAMTools SNP 173336 173336 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1018 SAMTools SNP 173357 173357 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1018 SAMTools SNP 173401 173401 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 175103 175103 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1018 SAMTools SNP 178757 178757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C6%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1018 SAMTools SNP 180034 180034 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 184379 184379 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold1018 SAMTools SNP 184387 184387 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 191101 191101 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C1%2C21%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C8.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1018 SAMTools SNP 191124 191124 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C37%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C4.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1018 SAMTools SNP 194843 194843 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1949%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D504%2C465%2C435%2C253%3BMQ%3D16%3BFQ%3D57%3BPV4%3D5.9e-06%2C2.4e-07%2C5.4e-07%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C163:87 scaffold1018 SAMTools SNP 219495 219495 39.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1018 SAMTools SNP 221639 221639 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold1018 SAMTools SNP 221767 221767 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1018 SAMTools SNP 222730 222730 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1018 SAMTools SNP 223012 223012 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C85:41 scaffold1018 SAMTools SNP 223374 223374 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C87%2C0:99 scaffold1018 SAMTools SNP 242939 242939 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 242948 242948 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1018 SAMTools SNP 242962 242962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1018 SAMTools SNP 247696 247696 202 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20%2C234%2C0%2C231:51 scaffold1018 SAMTools SNP 248091 248091 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C6%3BMQ%3D48%3BFQ%3D136%3BPV4%3D0.59%2C0.21%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1018 SAMTools SNP 248106 248106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1018 SAMTools SNP 251608 251608 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1018 SAMTools SNP 273856 273856 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C39%2C0:75 scaffold1018 SAMTools SNP 277152 277152 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0033%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C137:41 scaffold1018 SAMTools SNP 277290 277290 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1018 SAMTools SNP 279136 279136 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1018 SAMTools SNP 279714 279714 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00074%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1018 SAMTools SNP 279944 279944 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1018 SAMTools SNP 280836 280836 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 280969 280969 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1018 SAMTools SNP 282005 282005 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold1018 SAMTools SNP 283100 283100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283164 283164 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283662 283662 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 283793 283793 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.15%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1018 SAMTools SNP 292268 292268 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C152:73 scaffold1018 SAMTools SNP 295453 295453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1018 SAMTools SNP 296761 296761 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1018 SAMTools SNP 302168 302168 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 302180 302180 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 307094 307094 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1018 SAMTools SNP 307833 307833 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1018 SAMTools SNP 310315 310315 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C77%2C0%2C73%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.12%2C6e-16%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1018 SAMTools SNP 310453 310453 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1018 SAMTools SNP 310602 310602 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 314181 314181 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C94%2C0%2C28%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.36%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C242:99 scaffold1018 SAMTools SNP 314199 314199 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C70%2C0%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C205:94 scaffold1018 SAMTools SNP 318056 318056 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 318074 318074 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C213:70 scaffold1018 SAMTools SNP 318095 318095 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 318609 318609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 320345 320345 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1018 SAMTools SNP 320463 320463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 322472 322472 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 322685 322685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C78%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D8.8e-09%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold1018 SAMTools SNP 322960 322960 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C152%2C14%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324631 324631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C167%2C8%2C151%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324688 324688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 324903 324903 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1018 SAMTools SNP 325332 325332 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C72%2C58%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 325449 325449 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C62%2C6%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1018 SAMTools SNP 326078 326078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C21%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1018 SAMTools SNP 326501 326501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 327123 327123 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C56%2C0%2C21%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1018 SAMTools SNP 327148 327148 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C0%2C15%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.057%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1018 SAMTools SNP 327600 327600 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.54%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1018 SAMTools SNP 328959 328959 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C79%2C6%2C28%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.00025%2C1%2C1%2C3.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1018 SAMTools SNP 330392 330392 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C38%2C74%3BMQ%3D50%3BFQ%3D224%3BPV4%3D4.1e-07%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1018 SAMTools SNP 330395 330395 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C73%2C1%2C51%3BMQ%3D50%3BFQ%3D215%3BPV4%3D4.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1018 SAMTools SNP 330966 330966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 331339 331339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 335246 335246 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 335258 335258 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 336487 336487 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1018 SAMTools SNP 339724 339724 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 343570 343570 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C94%3BMQ%3D21%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1018 SAMTools SNP 345811 345811 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D40%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C42%2C0:81 scaffold1018 SAMTools SNP 345819 345819 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C0%3BMQ%3D45%3BFQ%3D99%3BPV4%3D0.0028%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1018 SAMTools SNP 347396 347396 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 365004 365004 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 370652 370652 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1018 SAMTools SNP 370661 370661 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1018 SAMTools SNP 372470 372470 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1018 SAMTools SNP 373009 373009 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1018 SAMTools SNP 373044 373044 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1018 SAMTools SNP 373062 373062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1018 SAMTools SNP 373416 373416 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold1018 SAMTools SNP 373779 373779 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1018 SAMTools SNP 373815 373815 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold1018 SAMTools SNP 373843 373843 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1018 SAMTools SNP 374354 374354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1018 SAMTools SNP 374385 374385 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1018 SAMTools SNP 374433 374433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1018 SAMTools SNP 374787 374787 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.23%2C0.025%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1018 SAMTools SNP 374877 374877 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1018 SAMTools SNP 375969 375969 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 375993 375993 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 376805 376805 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1018 SAMTools SNP 377612 377612 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1018 SAMTools SNP 378134 378134 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1018 SAMTools SNP 378620 378620 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 379117 379117 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 379243 379243 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 379249 379249 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1018 SAMTools SNP 380978 380978 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1018 SAMTools SNP 387242 387242 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 387964 387964 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1018 SAMTools SNP 389733 389733 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1018 SAMTools SNP 406150 406150 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1018 SAMTools SNP 430404 430404 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1018 SAMTools SNP 449970 449970 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1018 SAMTools SNP 451167 451167 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1018 SAMTools SNP 451257 451257 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1018 SAMTools SNP 506710 506710 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1018 SAMTools SNP 524988 524988 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 525001 525001 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 573552 573552 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1018 SAMTools SNP 574062 574062 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D5.38%3BPV4%3D1%2C5.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C35:32 scaffold1018 SAMTools SNP 574815 574815 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1018 SAMTools SNP 580396 580396 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold1018 SAMTools SNP 583137 583137 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1018 SAMTools SNP 583140 583140 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1018 SAMTools SNP 586932 586932 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1018 SAMTools SNP 587002 587002 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1018 SAMTools SNP 587035 587035 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.11%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold1018 SAMTools SNP 587051 587051 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1018 SAMTools SNP 587060 587060 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1018 SAMTools SNP 587250 587250 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1018 SAMTools SNP 595784 595784 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1018 SAMTools SNP 595850 595850 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.18%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1018 SAMTools SNP 595965 595965 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.49%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1018 SAMTools SNP 596329 596329 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1018 SAMTools SNP 596653 596653 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold1018 SAMTools SNP 598258 598258 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.003%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C129:84 scaffold1018 SAMTools SNP 598270 598270 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1018 SAMTools SNP 598483 598483 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold1018 SAMTools SNP 598492 598492 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1018 SAMTools SNP 598696 598696 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1018 SAMTools SNP 600349 600349 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1018 SAMTools SNP 600352 600352 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.34%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1018 SAMTools SNP 600852 600852 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1018 SAMTools SNP 600858 600858 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold102 SAMTools SNP 5191 5191 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D788%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold102 SAMTools SNP 11146 11146 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C114%2C0:99 scaffold102 SAMTools SNP 12103 12103 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C255%2C0:99 scaffold102 SAMTools SNP 17818 17818 222 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0%2C238%2C58%2C226:99 scaffold102 SAMTools SNP 20559 20559 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 54442 54442 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 55790 55790 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 57626 57626 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 62329 62329 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 66360 66360 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 68945 68945 26.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold102 SAMTools SNP 70916 70916 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 70924 70924 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 73252 73252 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C84%2C0:99 scaffold102 SAMTools SNP 77333 77333 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C46%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C199%2C0:99 scaffold102 SAMTools SNP 80050 80050 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C137%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold102 SAMTools SNP 80202 80202 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C18%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C1.5e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold102 SAMTools SNP 80976 80976 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C8%2C49%2C13%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C3.8e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold102 SAMTools SNP 81674 81674 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold102 SAMTools SNP 82960 82960 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 83993 83993 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C238:65 scaffold102 SAMTools SNP 90919 90919 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold102 SAMTools SNP 91672 91672 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold102 SAMTools SNP 91731 91731 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 92185 92185 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C243:99 scaffold102 SAMTools SNP 92201 92201 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold102 SAMTools SNP 92285 92285 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.56%2C4.4e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold102 SAMTools SNP 93775 93775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 93803 93803 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 94156 94156 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 94221 94221 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C134:99 scaffold102 SAMTools SNP 94412 94412 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.3%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold102 SAMTools SNP 94484 94484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.16%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold102 SAMTools SNP 94919 94919 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 96529 96529 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 96536 96536 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 96840 96840 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 97012 97012 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.2%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold102 SAMTools SNP 97034 97034 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 97041 97041 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold102 SAMTools SNP 97712 97712 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 97729 97729 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 97810 97810 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 97833 97833 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 98297 98297 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 98514 98514 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold102 SAMTools SNP 99143 99143 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold102 SAMTools SNP 99255 99255 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 99263 99263 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 99281 99281 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold102 SAMTools SNP 99665 99665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 100883 100883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.078%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 101344 101344 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C12%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.00047%2C0.41%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 101362 101362 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C2%3BMQ%3D47%3BFQ%3D152%3BPV4%3D0.38%2C5e-05%2C0.3%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold102 SAMTools SNP 101564 101564 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 101611 101611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 103855 103855 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C3%3BMQ%3D47%3BFQ%3D23%3BPV4%3D0.26%2C9.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C225:53 scaffold102 SAMTools SNP 103889 103889 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold102 SAMTools SNP 103929 103929 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold102 SAMTools SNP 105072 105072 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold102 SAMTools SNP 105993 105993 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 106984 106984 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold102 SAMTools SNP 108250 108250 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold102 SAMTools SNP 108637 108637 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C202:99 scaffold102 SAMTools SNP 109739 109739 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C211:99 scaffold102 SAMTools SNP 110519 110519 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold102 SAMTools SNP 110650 110650 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold102 SAMTools SNP 110724 110724 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 110726 110726 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 111369 111369 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.45%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold102 SAMTools SNP 111580 111580 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 113763 113763 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 115806 115806 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold102 SAMTools SNP 116420 116420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 116466 116466 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C6.5e-09%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold102 SAMTools SNP 116520 116520 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold102 SAMTools SNP 117239 117239 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold102 SAMTools SNP 117754 117754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 117760 117760 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.28%2C4.5e-07%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold102 SAMTools SNP 118771 118771 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 121903 121903 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C20%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0077%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C156:99 scaffold102 SAMTools SNP 122215 122215 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C13%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.26%2C5.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C85:88 scaffold102 SAMTools SNP 122828 122828 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 129340 129340 64.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold102 SAMTools SNP 137729 137729 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 137749 137749 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 137968 137968 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 179972 179972 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 263101 263101 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 263524 263524 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C160:48 scaffold102 SAMTools SNP 267311 267311 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 295687 295687 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold102 SAMTools SNP 296655 296655 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold102 SAMTools SNP 296724 296724 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 299908 299908 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 300513 300513 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 300622 300622 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 331696 331696 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 370179 370179 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.018%2C5.2e-06%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C158:64 scaffold102 SAMTools SNP 375253 375253 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 378334 378334 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold102 SAMTools SNP 378364 378364 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 380859 380859 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold102 SAMTools SNP 387163 387163 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold102 SAMTools SNP 387470 387470 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold102 SAMTools SNP 387790 387790 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold102 SAMTools SNP 387798 387798 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 399244 399244 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold102 SAMTools SNP 433563 433563 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold102 SAMTools SNP 446605 446605 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 458448 458448 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold102 SAMTools SNP 458880 458880 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 460466 460466 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.07%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C73:52 scaffold102 SAMTools SNP 462488 462488 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 464003 464003 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 464053 464053 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 464566 464566 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold102 SAMTools SNP 464578 464578 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold102 SAMTools SNP 497768 497768 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 497769 497769 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 498347 498347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold102 SAMTools SNP 507170 507170 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507179 507179 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C47%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.46%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507545 507545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D630%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D326%2C103%2C176%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507582 507582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C44%2C35%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 507661 507661 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C2%2C34%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold102 SAMTools SNP 508184 508184 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0021%2C0.2%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold102 SAMTools SNP 508539 508539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.17%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 508667 508667 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C24%2C6%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold102 SAMTools SNP 508706 508706 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C18%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 510785 510785 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.057%2C0.32%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold102 SAMTools SNP 510854 510854 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C62%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 511804 511804 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 513928 513928 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C52%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold102 SAMTools SNP 514429 514429 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C7%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.7%2C0.0082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold102 SAMTools SNP 514469 514469 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.018%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 514551 514551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C34%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold102 SAMTools SNP 514733 514733 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C9%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.66%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold102 SAMTools SNP 514817 514817 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold102 SAMTools SNP 515475 515475 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold102 SAMTools SNP 515583 515583 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C48%2C0:93 scaffold102 SAMTools SNP 516897 516897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C15%2C12%3BMQ%3D42%3BFQ%3D200%3BPV4%3D0.0065%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold102 SAMTools SNP 516927 516927 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C15%2C22%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 518917 518917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C33%3BMQ%3D43%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold102 SAMTools SNP 518961 518961 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C75%2C1%3BMQ%3D46%3BFQ%3D225%3BPV4%3D3.8e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 519893 519893 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold102 SAMTools SNP 521428 521428 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C14%2C12%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold102 SAMTools SNP 528057 528057 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42.9%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C88:73 scaffold102 SAMTools SNP 528861 528861 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C4%2C6%3BMQ%3D45%3BFQ%3D49%3BPV4%3D0.0009%2C3.7e-08%2C0.47%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C239:79 scaffold102 SAMTools SNP 536278 536278 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C49%3BMQ%3D47%3BFQ%3D216%3BPV4%3D0.093%2C1%2C0.16%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold102 SAMTools SNP 536302 536302 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold102 SAMTools SNP 536553 536553 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C15%2C0%3BMQ%3D49%3BFQ%3D200%3BPV4%3D0.23%2C0.15%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold102 SAMTools SNP 536622 536622 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C3%2C4%3BMQ%3D49%3BFQ%3D122%3BPV4%3D0.005%2C1%2C0.014%2C1.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold102 SAMTools SNP 536676 536676 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C99%2C9%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold102 SAMTools SNP 536680 536680 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C70%2C1%2C49%3BMQ%3D50%3BFQ%3D209%3BPV4%3D2.1e-07%2C0.4%2C0.067%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold102 SAMTools SNP 537302 537302 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C162%2C5%2C61%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 538034 538034 49.1 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C20%2C2%2C73%2C0%2C70:33 scaffold102 SAMTools SNP 538165 538165 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C25%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold102 SAMTools SNP 542995 542995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 543055 543055 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0031%2C0.24%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold102 SAMTools SNP 543177 543177 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.1e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C244:44 scaffold102 SAMTools SNP 550560 550560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C67%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 555638 555638 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C49%2C0%2C11%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.34%2C0.058%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold102 SAMTools SNP 558111 558111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold102 SAMTools SNP 558180 558180 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0086%2C3.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold102 SAMTools SNP 558228 558228 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00012%2C4.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold102 SAMTools SNP 558243 558243 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0034%2C5.5e-13%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C242:83 scaffold102 SAMTools SNP 558291 558291 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 559332 559332 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 559350 559350 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 559521 559521 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.051%2C1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C216:65 scaffold102 SAMTools SNP 559576 559576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 560127 560127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 560139 560139 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 561556 561556 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C31%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0002%2C5.5e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold102 SAMTools SNP 561563 561563 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.00018%2C6.2e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold102 SAMTools SNP 561596 561596 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C48%2C0%2C15%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.33%2C7.1e-09%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold102 SAMTools SNP 562467 562467 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 562470 562470 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 562890 562890 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.14%2C5.5e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold102 SAMTools SNP 562938 562938 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold102 SAMTools SNP 563296 563296 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.037%2C0.065%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold102 SAMTools SNP 563477 563477 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C119:99 scaffold102 SAMTools SNP 575125 575125 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C157:99 scaffold102 SAMTools SNP 575134 575134 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C241:99 scaffold102 SAMTools SNP 575399 575399 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.16%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C167:99 scaffold102 SAMTools SNP 575645 575645 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 575664 575664 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold102 SAMTools SNP 575720 575720 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0047%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold102 SAMTools SNP 576407 576407 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 576702 576702 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 577679 577679 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold102 SAMTools SNP 577987 577987 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 579545 579545 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold102 SAMTools SNP 579602 579602 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold102 SAMTools SNP 579642 579642 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C127:99 scaffold102 SAMTools SNP 579644 579644 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.003%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C176:99 scaffold102 SAMTools SNP 580268 580268 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold102 SAMTools SNP 580631 580631 226 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold102 SAMTools SNP 581304 581304 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold102 SAMTools SNP 593519 593519 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold102 SAMTools SNP 594229 594229 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 594257 594257 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 603985 603985 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 603989 603989 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 604454 604454 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 604459 604459 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 640437 640437 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C156:49 scaffold102 SAMTools SNP 648552 648552 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 648581 648581 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 658817 658817 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 658829 658829 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 659326 659326 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold102 SAMTools SNP 659462 659462 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 660959 660959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 660986 660986 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 663991 663991 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold102 SAMTools SNP 665909 665909 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 667064 667064 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold102 SAMTools SNP 667472 667472 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold102 SAMTools SNP 669745 669745 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold102 SAMTools SNP 669895 669895 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 669906 669906 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 678861 678861 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C42%2C0:81 scaffold102 SAMTools SNP 753858 753858 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 762443 762443 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold102 SAMTools SNP 789041 789041 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 806349 806349 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 806385 806385 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold102 SAMTools SNP 806464 806464 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold102 SAMTools SNP 806697 806697 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 806730 806730 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 806733 806733 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 807531 807531 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 807868 807868 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold102 SAMTools SNP 809168 809168 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 810151 810151 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 810157 810157 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 810881 810881 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold102 SAMTools SNP 810926 810926 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold102 SAMTools SNP 811363 811363 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold102 SAMTools SNP 811524 811524 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C5.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C254:78 scaffold102 SAMTools SNP 811932 811932 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 811934 811934 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 812067 812067 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold102 SAMTools SNP 812091 812091 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 813265 813265 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C77:78 scaffold102 SAMTools SNP 813345 813345 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.34%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold102 SAMTools SNP 820132 820132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 849691 849691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D652%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 849728 849728 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C341%2C57%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-08%2C2.9e-259%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 850333 850333 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D231%2C42%2C147%2C44%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.04%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold102 SAMTools SNP 850396 850396 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C51%2C0:99 scaffold102 SAMTools SNP 850629 850629 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold102 SAMTools SNP 851698 851698 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold102 SAMTools SNP 852376 852376 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold102 SAMTools SNP 853732 853732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 854079 854079 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 855792 855792 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold102 SAMTools SNP 856025 856025 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold102 SAMTools SNP 857410 857410 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold102 SAMTools SNP 857983 857983 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 858478 858478 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 858487 858487 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 867807 867807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 870888 870888 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-221%3BPV4%3D1%2C1%2C1%2C5.5e-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C194%2C0:99 scaffold102 SAMTools SNP 870912 870912 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C93%2C0%3BMQ%3D50%3BFQ%3D-260%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C233%2C0:99 scaffold102 SAMTools SNP 871845 871845 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C93%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 872998 872998 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C192%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 887715 887715 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 890748 890748 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 897230 897230 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 897233 897233 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 898895 898895 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold102 SAMTools SNP 898907 898907 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold102 SAMTools SNP 901470 901470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 911261 911261 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 911569 911569 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 919843 919843 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold102 SAMTools SNP 920184 920184 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold102 SAMTools SNP 920187 920187 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold102 SAMTools SNP 920199 920199 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold102 SAMTools SNP 920551 920551 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 922249 922249 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold102 SAMTools SNP 922378 922378 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 922426 922426 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold102 SAMTools SNP 923667 923667 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 923695 923695 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 923928 923928 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold102 SAMTools SNP 923933 923933 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold102 SAMTools SNP 923949 923949 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold102 SAMTools SNP 924571 924571 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 924688 924688 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold102 SAMTools SNP 925275 925275 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 925317 925317 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold102 SAMTools SNP 925318 925318 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.47%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold102 SAMTools SNP 925729 925729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold102 SAMTools SNP 926270 926270 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 930230 930230 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6.8e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold102 SAMTools SNP 930644 930644 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold102 SAMTools SNP 930659 930659 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 930671 930671 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C48%2C0:93 scaffold102 SAMTools SNP 931821 931821 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 931891 931891 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold102 SAMTools SNP 931942 931942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold102 SAMTools SNP 933078 933078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C24%2C58%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C4.1e-69%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 933252 933252 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C22%2C24%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.83%2C6.5e-94%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold102 SAMTools SNP 933261 933261 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C4%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.74%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 935294 935294 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.058%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold102 SAMTools SNP 935316 935316 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold102 SAMTools SNP 935397 935397 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold102 SAMTools SNP 935691 935691 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold102 SAMTools SNP 940211 940211 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold102 SAMTools SNP 940632 940632 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold102 SAMTools SNP 954079 954079 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold102 SAMTools SNP 971923 971923 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold102 SAMTools SNP 972869 972869 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 972881 972881 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 972890 972890 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 973209 973209 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold102 SAMTools SNP 973329 973329 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold102 SAMTools SNP 973664 973664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 973966 973966 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C36%2C0:69 scaffold102 SAMTools SNP 977037 977037 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 977063 977063 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 977875 977875 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 978843 978843 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 979320 979320 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold102 SAMTools SNP 981346 981346 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 985002 985002 17.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold102 SAMTools SNP 985170 985170 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 985256 985256 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 985263 985263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 987864 987864 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold102 SAMTools SNP 987916 987916 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 988514 988514 22.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold102 SAMTools SNP 990377 990377 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 990402 990402 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 990692 990692 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 991188 991188 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1005959 1005959 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1005963 1005963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1006030 1006030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C7%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1014079 1014079 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C0%2C28%3BMQ%3D50%3BFQ%3D208%3BPV4%3D3.5e-10%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold102 SAMTools SNP 1017714 1017714 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C7%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D3.5e-06%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold102 SAMTools SNP 1017723 1017723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold102 SAMTools SNP 1017765 1017765 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold102 SAMTools SNP 1017828 1017828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1017918 1017918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 1017952 1017952 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C4%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.71%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold102 SAMTools SNP 1017975 1017975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1018442 1018442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1018466 1018466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1018958 1018958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1018988 1018988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C40%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019009 1019009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019420 1019420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C11%2C26%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1019462 1019462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C24%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold102 SAMTools SNP 1019973 1019973 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C28%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1020021 1020021 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C30%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1020078 1020078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C50%2C58%3BMQ%3D50%3BFQ%3D-270%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C243%2C0:99 scaffold102 SAMTools SNP 1021072 1021072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C49%2C46%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D0.24%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold102 SAMTools SNP 1021103 1021103 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold102 SAMTools SNP 1021523 1021523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C60%2C8%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C3.2e-06%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1021572 1021572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C15%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.9e-08%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1022760 1022760 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C255%2C0:99 scaffold102 SAMTools SNP 1036219 1036219 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1039300 1039300 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.096%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold102 SAMTools SNP 1039483 1039483 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C176:91 scaffold102 SAMTools SNP 1040242 1040242 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold102 SAMTools SNP 1040244 1040244 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold102 SAMTools SNP 1042681 1042681 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold102 SAMTools SNP 1044082 1044082 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C109:74 scaffold102 SAMTools SNP 1044111 1044111 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1044453 1044453 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold102 SAMTools SNP 1044481 1044481 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1045119 1045119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C7%3BMQ%3D40%3BFQ%3D13.2%3BPV4%3D0.27%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold102 SAMTools SNP 1046062 1046062 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C13%2C0%3BMQ%3D30%3BFQ%3D51%3BPV4%3D0.096%2C1%2C0.12%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C197:81 scaffold102 SAMTools SNP 1046278 1046278 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C9%2C10%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold102 SAMTools SNP 1046295 1046295 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.47%2C9.1e-26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold102 SAMTools SNP 1046838 1046838 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D35%3BFQ%3D3.48%3BPV4%3D1%2C0.0022%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C32:28 scaffold102 SAMTools SNP 1046949 1046949 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold102 SAMTools SNP 1049621 1049621 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1053055 1053055 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C0.11%2C0.25%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C77:78 scaffold102 SAMTools SNP 1053449 1053449 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C4%3BMQ%3D45%3BFQ%3D20.1%3BPV4%3D0.54%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold102 SAMTools SNP 1053520 1053520 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C11%3BMQ%3D41%3BFQ%3D92%3BPV4%3D0.056%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C119:99 scaffold102 SAMTools SNP 1062703 1062703 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold102 SAMTools SNP 1062753 1062753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1067370 1067370 12.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold102 SAMTools SNP 1069120 1069120 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.025%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C43:43 scaffold102 SAMTools SNP 1069146 1069146 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.00022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C141:68 scaffold102 SAMTools SNP 1069462 1069462 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C61%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C205%2C0:99 scaffold102 SAMTools SNP 1069636 1069636 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold102 SAMTools SNP 1070198 1070198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C41%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1070264 1070264 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C21%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1071859 1071859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C7%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1071919 1071919 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.18%2C0.075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold102 SAMTools SNP 1073125 1073125 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold102 SAMTools SNP 1075149 1075149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 1075218 1075218 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1075875 1075875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C9%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.057%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1076140 1076140 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C2%2C23%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1078793 1078793 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1078795 1078795 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1082576 1082576 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.18%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C133:75 scaffold102 SAMTools SNP 1083180 1083180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold102 SAMTools SNP 1083479 1083479 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold102 SAMTools SNP 1084751 1084751 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C190%2C0:99 scaffold102 SAMTools SNP 1084906 1084906 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C6.4e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C71:74 scaffold102 SAMTools SNP 1085173 1085173 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.00096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold102 SAMTools SNP 1085176 1085176 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.34%2C1%2C1%2C4.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold102 SAMTools SNP 1087115 1087115 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C6.2e-15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C150:44 scaffold102 SAMTools SNP 1087501 1087501 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold102 SAMTools SNP 1087970 1087970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2142%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C936%2C805%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1088021 1088021 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5797%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C78%2C456%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0033%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1088716 1088716 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C120%2C1%2C44%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C3.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold102 SAMTools SNP 1095313 1095313 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C7.4e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C196:93 scaffold102 SAMTools SNP 1096009 1096009 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold102 SAMTools SNP 1106169 1106169 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1108776 1108776 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C50%2C15%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C6e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1108785 1108785 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1110306 1110306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold102 SAMTools SNP 1110324 1110324 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C4%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0073%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold102 SAMTools SNP 1110336 1110336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold102 SAMTools SNP 1111443 1111443 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.15%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C3%2C0:6 scaffold102 SAMTools SNP 1113116 1113116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1113389 1113389 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C243:59 scaffold102 SAMTools SNP 1117631 1117631 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C13%2C20%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C6.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold102 SAMTools SNP 1118095 1118095 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.48%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold102 SAMTools SNP 1121188 1121188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold102 SAMTools SNP 1125228 1125228 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1125749 1125749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1125837 1125837 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C19%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C217%2C0:99 scaffold102 SAMTools SNP 1130227 1130227 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold102 SAMTools SNP 1130540 1130540 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold102 SAMTools SNP 1132439 1132439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C2%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold102 SAMTools SNP 1132462 1132462 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C9%2C61%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.027%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold102 SAMTools SNP 1133203 1133203 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold102 SAMTools SNP 1133303 1133303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C24%2C42%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.01%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1136257 1136257 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C15%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 1138096 1138096 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C255%2C0:99 scaffold102 SAMTools SNP 1138630 1138630 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C246:99 scaffold102 SAMTools SNP 1138659 1138659 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold102 SAMTools SNP 1138681 1138681 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1138813 1138813 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 1142479 1142479 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1142500 1142500 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1142988 1142988 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1142989 1142989 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold102 SAMTools SNP 1143013 1143013 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1143091 1143091 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C12%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold102 SAMTools SNP 1157431 1157431 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold102 SAMTools SNP 1159050 1159050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C89%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.43%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1159406 1159406 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold102 SAMTools SNP 1159930 1159930 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1160000 1160000 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold102 SAMTools SNP 1160010 1160010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C13%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold102 SAMTools SNP 1164036 1164036 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold102 SAMTools SNP 1164068 1164068 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D290%2C0%2C146%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold102 SAMTools SNP 1165460 1165460 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C21%2C67%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold102 SAMTools SNP 1165849 1165849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C180%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1165857 1165857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1166035 1166035 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold102 SAMTools SNP 1166044 1166044 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C21:24 scaffold102 SAMTools SNP 1166995 1166995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D709%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C442%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1167197 1167197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D713%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C700%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1167248 1167248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C699%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1168453 1168453 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1171060 1171060 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold102 SAMTools SNP 1171090 1171090 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 1171108 1171108 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1171934 1171934 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1172188 1172188 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1172230 1172230 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1173008 1173008 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1173140 1173140 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold102 SAMTools SNP 1173484 1173484 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold102 SAMTools SNP 1173809 1173809 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1174252 1174252 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.037%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold102 SAMTools SNP 1174673 1174673 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1174702 1174702 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1174926 1174926 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1174941 1174941 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1174965 1174965 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1175441 1175441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1175707 1175707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1178878 1178878 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C87%2C0:99 scaffold102 SAMTools SNP 1178901 1178901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold102 SAMTools SNP 1180800 1180800 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold102 SAMTools SNP 1182600 1182600 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold102 SAMTools SNP 1182654 1182654 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold102 SAMTools SNP 1191599 1191599 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold102 SAMTools SNP 1192426 1192426 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C63:66 scaffold102 SAMTools SNP 1192474 1192474 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1192575 1192575 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold102 SAMTools SNP 1195072 1195072 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold102 SAMTools SNP 1195360 1195360 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold102 SAMTools SNP 1195443 1195443 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.1e-29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C215:46 scaffold102 SAMTools SNP 1195519 1195519 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C10%2C14%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.31%2C1.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold102 SAMTools SNP 1195674 1195674 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold102 SAMTools SNP 1241259 1241259 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C16%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.5%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold102 SAMTools SNP 1242457 1242457 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold102 SAMTools SNP 1243629 1243629 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1243690 1243690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.01%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1244640 1244640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1244685 1244685 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C157:99 scaffold102 SAMTools SNP 1244707 1244707 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.29%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C228:99 scaffold102 SAMTools SNP 1244721 1244721 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.52%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold102 SAMTools SNP 1245238 1245238 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.12%2C0.021%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C230:36 scaffold102 SAMTools SNP 1247012 1247012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1247746 1247746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold102 SAMTools SNP 1256333 1256333 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1256839 1256839 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold102 SAMTools SNP 1257053 1257053 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold102 SAMTools SNP 1257174 1257174 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C39%2C0:75 scaffold102 SAMTools SNP 1257414 1257414 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold102 SAMTools SNP 1257648 1257648 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C39%2C0:65 scaffold102 SAMTools SNP 1260561 1260561 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C175%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1260930 1260930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1260984 1260984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold102 SAMTools SNP 1261600 1261600 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.034%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C208:91 scaffold102 SAMTools SNP 1261669 1261669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C43%2C39%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1261787 1261787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1263010 1263010 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C54%2C1%2C57%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1.6e-16%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold102 SAMTools SNP 1266982 1266982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1271866 1271866 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1271917 1271917 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold102 SAMTools SNP 1282063 1282063 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C51%2C0:89 scaffold102 SAMTools SNP 1283264 1283264 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold102 SAMTools SNP 1283298 1283298 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.03%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold102 SAMTools SNP 1283299 1283299 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.028%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold102 SAMTools SNP 1283308 1283308 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold102 SAMTools SNP 1283338 1283338 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold102 SAMTools SNP 1283823 1283823 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1284791 1284791 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0091%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold102 SAMTools SNP 1284833 1284833 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold102 SAMTools SNP 1286435 1286435 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1288251 1288251 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold102 SAMTools SNP 1288456 1288456 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold102 SAMTools SNP 1288977 1288977 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C175:99 scaffold102 SAMTools SNP 1289628 1289628 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold102 SAMTools SNP 1291678 1291678 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.02%2C1.2e-23%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C214:99 scaffold102 SAMTools SNP 1291771 1291771 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C11%2C12%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.19%2C3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold102 SAMTools SNP 1292120 1292120 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold102 SAMTools SNP 1292936 1292936 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C161:99 scaffold102 SAMTools SNP 1295078 1295078 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 1298514 1298514 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1298543 1298543 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold102 SAMTools SNP 1298750 1298750 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold102 SAMTools SNP 1298897 1298897 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold102 SAMTools SNP 1304643 1304643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1304696 1304696 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold102 SAMTools SNP 1304789 1304789 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C56%2C64%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C7.6e-91%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1304826 1304826 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C9%2C9%2C11%3BMQ%3D50%3BFQ%3D154%3BPV4%3D2.3e-06%2C1%2C1%2C2.8e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold102 SAMTools SNP 1305041 1305041 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C205%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1306212 1306212 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1306227 1306227 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1314195 1314195 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold102 SAMTools SNP 1317145 1317145 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1317547 1317547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold102 SAMTools SNP 1317621 1317621 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold102 SAMTools SNP 1346292 1346292 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold102 SAMTools SNP 1347462 1347462 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1348251 1348251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C11%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold102 SAMTools SNP 1348260 1348260 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold102 SAMTools SNP 1349870 1349870 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold102 SAMTools SNP 1350046 1350046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1350062 1350062 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1350586 1350586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1351505 1351505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold102 SAMTools SNP 1351656 1351656 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1361127 1361127 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1381380 1381380 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1381395 1381395 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1388627 1388627 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1390769 1390769 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.5%2C0.031%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C246:47 scaffold102 SAMTools SNP 1390904 1390904 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1391279 1391279 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold102 SAMTools SNP 1402272 1402272 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold102 SAMTools SNP 1454622 1454622 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold102 SAMTools SNP 1456051 1456051 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 1456082 1456082 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1469523 1469523 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold102 SAMTools SNP 1475323 1475323 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1475334 1475334 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold102 SAMTools SNP 1476323 1476323 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4038%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1236%2C839%2C172%2C785%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-107%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1478949 1478949 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6346%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1316%2C1356%2C2544%2C1083%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-63%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479018 1479018 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6297%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3193%2C1082%2C1509%2C510%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.98%2C0%2C1%2C2.2e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479027 1479027 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5743%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2981%2C1131%2C712%2C61%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.9e-37%2C1%2C1%2C1.7e-156;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold102 SAMTools SNP 1479063 1479063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4012%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D954%2C2097%2C83%2C875%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479090 1479090 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5434%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3549%2C86%2C1771%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1479301 1479301 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2050%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1381%2C0%2C668%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold102 SAMTools SNP 1480609 1480609 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C89%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C148:99 scaffold102 SAMTools SNP 1480610 1480610 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C242:99 scaffold102 SAMTools SNP 1480653 1480653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1489264 1489264 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C25%2C1%2C26%3BMQ%3D50%3BFQ%3D57%3BPV4%3D4.8e-14%2C1.2e-12%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold102 SAMTools SNP 1489337 1489337 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C27%2C40%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1490038 1490038 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C27%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold102 SAMTools SNP 1490056 1490056 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C19%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold102 SAMTools SNP 1490511 1490511 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C7%2C17%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold102 SAMTools SNP 1490574 1490574 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C56%2C27%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.059%2C0.06%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold102 SAMTools SNP 1491051 1491051 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D519%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C62%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold102 SAMTools SNP 1491141 1491141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold102 SAMTools SNP 1491162 1491162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C256%2C41%2C138%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1491600 1491600 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C55%2C72%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1492971 1492971 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C86%2C0%2C72%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.00072%2C1%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold102 SAMTools SNP 1496771 1496771 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 1496772 1496772 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold102 SAMTools SNP 1496842 1496842 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold102 SAMTools SNP 1496853 1496853 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1501537 1501537 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1505005 1505005 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1511596 1511596 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C54%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0049%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C78:81 scaffold102 SAMTools SNP 1511614 1511614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C50%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.042%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold102 SAMTools SNP 1511653 1511653 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.64%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold102 SAMTools SNP 1512057 1512057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.38%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold102 SAMTools SNP 1513043 1513043 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1513055 1513055 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold102 SAMTools SNP 1513299 1513299 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1514424 1514424 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold102 SAMTools SNP 1516405 1516405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold102 SAMTools SNP 1516459 1516459 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold102 SAMTools SNP 1516483 1516483 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C109:80 scaffold102 SAMTools SNP 1516755 1516755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold102 SAMTools SNP 1516781 1516781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.59%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold102 SAMTools SNP 1518680 1518680 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C10%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1.3e-24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold102 SAMTools SNP 1518710 1518710 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold102 SAMTools SNP 1519925 1519925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.21%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1520108 1520108 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C5%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.3%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold102 SAMTools SNP 1521754 1521754 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1521864 1521864 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold102 SAMTools SNP 1521883 1521883 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1522632 1522632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold102 SAMTools SNP 1523133 1523133 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C93:96 scaffold102 SAMTools SNP 1523157 1523157 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold102 SAMTools SNP 1525348 1525348 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C24%2C0:45 scaffold102 SAMTools SNP 1526025 1526025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1526056 1526056 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.48%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold102 SAMTools SNP 1526914 1526914 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1529047 1529047 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold102 SAMTools SNP 1529065 1529065 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.27%2C5.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C109:66 scaffold102 SAMTools SNP 1529202 1529202 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1529205 1529205 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold102 SAMTools SNP 1529238 1529238 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1533266 1533266 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C19%2C13%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.38%2C1.2e-30%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C144:99 scaffold102 SAMTools SNP 1533638 1533638 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C1.2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C149%2C0:99 scaffold102 SAMTools SNP 1533818 1533818 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C21%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold102 SAMTools SNP 1534195 1534195 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C6%2C37%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.31%2C1.9e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold102 SAMTools SNP 1534400 1534400 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.14%2C5.5e-08%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C104:75 scaffold102 SAMTools SNP 1535639 1535639 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold102 SAMTools SNP 1536550 1536550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold102 SAMTools SNP 1537087 1537087 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold102 SAMTools SNP 1537180 1537180 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold102 SAMTools SNP 1537186 1537186 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D0.1%2C0.1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold102 SAMTools SNP 1537192 1537192 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C245:91 scaffold102 SAMTools SNP 1537372 1537372 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.18%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold102 SAMTools SNP 1537606 1537606 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold102 SAMTools SNP 1537719 1537719 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C14%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold102 SAMTools SNP 1539275 1539275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C28%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold102 SAMTools SNP 1539474 1539474 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold102 SAMTools SNP 1539513 1539513 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold102 SAMTools SNP 1539627 1539627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1540027 1540027 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold102 SAMTools SNP 1540254 1540254 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540334 1540334 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.5%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540355 1540355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540520 1540520 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1540615 1540615 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.018%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1540960 1540960 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1541280 1541280 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold102 SAMTools SNP 1541640 1541640 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C27%2C0:51 scaffold102 SAMTools SNP 1568237 1568237 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C223:99 scaffold102 SAMTools SNP 1568264 1568264 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C40:43 scaffold102 SAMTools SNP 1568338 1568338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1568354 1568354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold102 SAMTools SNP 1568884 1568884 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold102 SAMTools SNP 1569592 1569592 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold102 SAMTools SNP 1573063 1573063 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold102 SAMTools SNP 1573103 1573103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold102 SAMTools SNP 1578008 1578008 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.44%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold102 SAMTools SNP 1580651 1580651 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold102 SAMTools SNP 1593352 1593352 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1593358 1593358 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1596313 1596313 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1628%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C373%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold102 SAMTools SNP 1596447 1596447 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1489%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C69%2C1378%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.094%2C4.6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C255%2C0:99 scaffold102 SAMTools SNP 1596711 1596711 39.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.25%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C15:18 scaffold102 SAMTools SNP 1597111 1597111 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1192%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1191%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C255%2C0:99 scaffold102 SAMTools SNP 1597159 1597159 41.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D766%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold102 SAMTools SNP 1597723 1597723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D783%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C228%2C335%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597762 1597762 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D726%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C150%2C77%2C315%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597763 1597763 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D730%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C315%2C178%2C155%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-20%2C3.8e-11%2C1%2C1.2e-56;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1597769 1597769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C309%2C6%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C5.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598332 1598332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C76%2C116%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-17%2C1%2C1%2C1.7e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598677 1598677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D213%2C26%2C301%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.18%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1598698 1598698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C663%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1603025 1603025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 1605216 1605216 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold102 SAMTools SNP 1605217 1605217 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold102 SAMTools SNP 1605225 1605225 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C11%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold102 SAMTools SNP 1605267 1605267 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1.6e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold102 SAMTools SNP 1605529 1605529 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold102 SAMTools SNP 1606132 1606132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C27%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold102 SAMTools SNP 1606142 1606142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C16%2C27%3BMQ%3D50%3BFQ%3D216%3BPV4%3D9.8e-10%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold102 SAMTools SNP 1606143 1606143 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C33%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D9.8e-10%2C0.082%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold102 SAMTools SNP 1606173 1606173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C44%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1606393 1606393 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C63%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold102 SAMTools SNP 1606428 1606428 224 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold102 SAMTools SNP 1606925 1606925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold102 SAMTools SNP 1606962 1606962 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C225:99 scaffold102 SAMTools SNP 1607279 1607279 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.66%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold102 SAMTools SNP 1608301 1608301 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C41%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-09%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1608548 1608548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C11%2C35%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.67%2C5.6e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold102 SAMTools SNP 1608554 1608554 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold102 SAMTools SNP 1608677 1608677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1608843 1608843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold102 SAMTools SNP 1608935 1608935 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C73%2C3%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1609038 1609038 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C66%2C0:99 scaffold102 SAMTools SNP 1609050 1609050 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C51%2C0:99 scaffold102 SAMTools SNP 1617067 1617067 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold102 SAMTools SNP 1619069 1619069 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C2%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619302 1619302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C49%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619317 1619317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619492 1619492 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1619531 1619531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold102 SAMTools SNP 1620332 1620332 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C56%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1620398 1620398 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C7%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.17%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold102 SAMTools SNP 1621736 1621736 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C0.26%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold102 SAMTools SNP 1622629 1622629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C16%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1622650 1622650 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1622654 1622654 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0015%2C0.013%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold102 SAMTools SNP 1623133 1623133 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.09%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold102 SAMTools SNP 1623533 1623533 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold102 SAMTools SNP 1623542 1623542 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1623653 1623653 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold102 SAMTools SNP 1628370 1628370 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.17%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold102 SAMTools SNP 1628373 1628373 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.58%2C0.089%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold102 SAMTools SNP 1641326 1641326 52.3 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C75%2C60%2C93%2C0%2C78:27 scaffold102 SAMTools SNP 1641368 1641368 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C36%2C0:69 scaffold102 SAMTools SNP 1642069 1642069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1647673 1647673 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold102 SAMTools SNP 1648035 1648035 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.059%2C8.8e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold102 SAMTools SNP 1648060 1648060 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold102 SAMTools SNP 1648148 1648148 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C0%2C18%3BMQ%3D50%3BFQ%3D151%3BPV4%3D9.7e-08%2C7.7e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold102 SAMTools SNP 1648238 1648238 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold102 SAMTools SNP 1649895 1649895 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0027%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold102 SAMTools SNP 1650187 1650187 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold102 SAMTools SNP 1650217 1650217 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C0%2C4%3BMQ%3D49%3BFQ%3D41%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold102 SAMTools SNP 1650310 1650310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold102 SAMTools SNP 1651086 1651086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold102 SAMTools SNP 1651274 1651274 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651292 1651292 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.19%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651456 1651456 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651546 1651546 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold102 SAMTools SNP 1651560 1651560 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1651789 1651789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold102 SAMTools SNP 1651978 1651978 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold102 SAMTools SNP 1651990 1651990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold102 SAMTools SNP 1652036 1652036 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold102 SAMTools SNP 1652039 1652039 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold102 SAMTools SNP 1652475 1652475 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1652555 1652555 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C10%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold102 SAMTools SNP 1653009 1653009 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C1%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold102 SAMTools SNP 1653031 1653031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold102 SAMTools SNP 1653598 1653598 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C9%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold102 SAMTools SNP 1653637 1653637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold102 SAMTools SNP 1653666 1653666 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C0%2C16%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0012%2C1.5e-05%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 1654205 1654205 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C52%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654213 1654213 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654360 1654360 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold102 SAMTools SNP 1654381 1654381 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.029%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold102 SAMTools SNP 1654413 1654413 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold102 SAMTools SNP 1654441 1654441 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1654807 1654807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold102 SAMTools SNP 1654811 1654811 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C0.28%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold102 SAMTools SNP 1656700 1656700 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 1657545 1657545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold102 SAMTools SNP 1657547 1657547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C4%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold102 SAMTools SNP 1657587 1657587 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C27%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1.4e-05%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold102 SAMTools SNP 1657595 1657595 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C1%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.02%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold102 SAMTools SNP 1657871 1657871 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold102 SAMTools SNP 1657891 1657891 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold102 SAMTools SNP 1657910 1657910 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold102 SAMTools SNP 1657942 1657942 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C6%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.044%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold102 SAMTools SNP 1658148 1658148 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C11%2C20%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold102 SAMTools SNP 1670027 1670027 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold102 SAMTools SNP 1671912 1671912 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold102 SAMTools SNP 1674642 1674642 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold102 SAMTools SNP 1674776 1674776 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold102 SAMTools SNP 1679293 1679293 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold102 SAMTools SNP 1679484 1679484 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold102 SAMTools SNP 1680014 1680014 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1680035 1680035 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold102 SAMTools SNP 1680136 1680136 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1681045 1681045 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.7e-05%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold102 SAMTools SNP 1681170 1681170 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold102 SAMTools SNP 1681406 1681406 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold102 SAMTools SNP 1681461 1681461 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold102 SAMTools SNP 1681810 1681810 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold102 SAMTools SNP 1684416 1684416 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold102 SAMTools SNP 1684900 1684900 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold102 SAMTools SNP 1684918 1684918 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold102 SAMTools SNP 1685487 1685487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.21%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold102 SAMTools SNP 1685886 1685886 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold102 SAMTools SNP 1686640 1686640 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold102 SAMTools SNP 1687020 1687020 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold102 SAMTools SNP 1696680 1696680 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold102 SAMTools SNP 1697811 1697811 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.087%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold102 SAMTools SNP 1697814 1697814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold102 SAMTools SNP 1697823 1697823 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C150:99 scaffold102 SAMTools SNP 1697871 1697871 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.022%2C0.083%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold102 SAMTools SNP 1698653 1698653 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold102 SAMTools SNP 1698683 1698683 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-06%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold102 SAMTools SNP 1699258 1699258 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold102 SAMTools SNP 1709520 1709520 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold102 SAMTools SNP 1709525 1709525 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold102 SAMTools SNP 1721699 1721699 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1020 SAMTools SNP 3363 3363 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 3393 3393 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1020 SAMTools SNP 10765 10765 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 42414 42414 58.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1020 SAMTools SNP 43681 43681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 140682 140682 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1020 SAMTools SNP 140802 140802 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1020 SAMTools SNP 163415 163415 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1020 SAMTools SNP 163468 163468 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1020 SAMTools SNP 175893 175893 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1020 SAMTools SNP 176859 176859 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 176876 176876 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1020 SAMTools SNP 178218 178218 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 178251 178251 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 178954 178954 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C74:52 scaffold1020 SAMTools SNP 189534 189534 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1020 SAMTools SNP 205887 205887 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 205930 205930 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 209928 209928 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 210935 210935 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 210949 210949 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 215780 215780 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C63%2C0:99 scaffold1020 SAMTools SNP 216016 216016 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1020 SAMTools SNP 219078 219078 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 219096 219096 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 219300 219300 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1020 SAMTools SNP 226941 226941 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1020 SAMTools SNP 230371 230371 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1020 SAMTools SNP 230416 230416 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1020 SAMTools SNP 319983 319983 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1020 SAMTools SNP 321245 321245 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C100:99 scaffold1020 SAMTools SNP 321296 321296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1020 SAMTools SNP 321328 321328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C10%2C7%3BMQ%3D47%3BFQ%3D198%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1020 SAMTools SNP 322909 322909 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C4%3BMQ%3D44%3BFQ%3D50%3BPV4%3D1%2C0.014%2C0.0055%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1020 SAMTools SNP 330089 330089 79.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C15%2C0:27 scaffold1020 SAMTools SNP 331587 331587 8.67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C24%2C0:29 scaffold1021 SAMTools SNP 3623 3623 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3644 3644 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3730 3730 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 3754 3754 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 6175 6175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 6371 6371 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C52%2C24%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 6473 6473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1021 SAMTools SNP 6494 6494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1021 SAMTools SNP 6940 6940 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 7329 7329 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1021 SAMTools SNP 7800 7800 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1021 SAMTools SNP 8461 8461 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1021 SAMTools SNP 8572 8572 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 14410 14410 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1021 SAMTools SNP 15171 15171 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 15173 15173 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 21726 21726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1021 SAMTools SNP 21827 21827 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1021 SAMTools SNP 22003 22003 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1021 SAMTools SNP 22069 22069 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 22135 22135 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1021 SAMTools SNP 23030 23030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 23217 23217 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold1021 SAMTools SNP 25362 25362 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C211:99 scaffold1021 SAMTools SNP 25414 25414 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.24%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1021 SAMTools SNP 28817 28817 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C26:57 scaffold1021 SAMTools SNP 28827 28827 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.044%2C0.0027%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1021 SAMTools SNP 28830 28830 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C0.0074%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1021 SAMTools SNP 29611 29611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1021 SAMTools SNP 29885 29885 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1021 SAMTools SNP 29939 29939 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C39%2C0:75 scaffold1021 SAMTools SNP 35380 35380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1021 SAMTools SNP 37374 37374 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 38587 38587 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.32%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1021 SAMTools SNP 38593 38593 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1021 SAMTools SNP 39202 39202 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.72%2C3.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1021 SAMTools SNP 39872 39872 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1021 SAMTools SNP 39896 39896 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1021 SAMTools SNP 40037 40037 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1021 SAMTools SNP 40359 40359 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C15%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.09%2C4.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1021 SAMTools SNP 40803 40803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C49%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1021 SAMTools SNP 41192 41192 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C241:99 scaffold1021 SAMTools SNP 55040 55040 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 61730 61730 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C45%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.014%2C0.37%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C37:40 scaffold1021 SAMTools SNP 62129 62129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D44%2C2%2C195%2C120%3BMQ%3D50%3BFQ%3D-80%3BPV4%3D6e-07%2C0.47%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C53%2C0:99 scaffold1021 SAMTools SNP 62216 62216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C239%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 62225 62225 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C194%2C10%2C36%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.18%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1021 SAMTools SNP 62434 62434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C48%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1021 SAMTools SNP 62470 62470 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 63862 63862 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C87%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 64034 64034 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1021 SAMTools SNP 65907 65907 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 67184 67184 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1021 SAMTools SNP 67189 67189 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1021 SAMTools SNP 81815 81815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C123%2C22%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 81866 81866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C335%2C55%2C276%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.008%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 85231 85231 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C141%2C468%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 85286 85286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C56%2C82%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 90296 90296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C173%2C9%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 90308 90308 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C31%2C298%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1021 SAMTools SNP 92937 92937 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 92938 92938 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 97562 97562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1021 SAMTools SNP 97586 97586 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.068%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold1021 SAMTools SNP 97607 97607 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1021 SAMTools SNP 97889 97889 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C138%2C0:99 scaffold1021 SAMTools SNP 114004 114004 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1021 SAMTools SNP 119093 119093 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 119686 119686 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1021 SAMTools SNP 119699 119699 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 126569 126569 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1021 SAMTools SNP 128571 128571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 128593 128593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C16%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1021 SAMTools SNP 128822 128822 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1021 SAMTools SNP 129484 129484 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1021 SAMTools SNP 129560 129560 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1021 SAMTools SNP 129587 129587 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 169995 169995 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1021 SAMTools SNP 171602 171602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 200374 200374 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 225866 225866 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1021 SAMTools SNP 236933 236933 16.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1021 SAMTools SNP 242695 242695 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 244850 244850 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1021 SAMTools SNP 248451 248451 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1021 SAMTools SNP 259375 259375 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C80:59 scaffold1021 SAMTools SNP 259687 259687 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1021 SAMTools SNP 290494 290494 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1021 SAMTools SNP 291717 291717 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 292534 292534 9.63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold1021 SAMTools SNP 292555 292555 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1021 SAMTools SNP 292785 292785 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 293004 293004 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.52%2C7.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1021 SAMTools SNP 326357 326357 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 326373 326373 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 327912 327912 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1021 SAMTools SNP 327922 327922 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1021 SAMTools SNP 328059 328059 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.032%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1021 SAMTools SNP 328477 328477 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold1021 SAMTools SNP 328674 328674 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1021 SAMTools SNP 328846 328846 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1021 SAMTools SNP 328895 328895 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C0.046%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C68:43 scaffold1021 SAMTools SNP 330164 330164 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C72%2C0:99 scaffold1021 SAMTools SNP 330225 330225 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C13%2C6%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1021 SAMTools SNP 330626 330626 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C3.9e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1021 SAMTools SNP 330754 330754 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1021 SAMTools SNP 332226 332226 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1021 SAMTools SNP 332996 332996 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold1021 SAMTools SNP 333552 333552 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1021 SAMTools SNP 338582 338582 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold1021 SAMTools SNP 353660 353660 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1021 SAMTools SNP 353672 353672 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1021 SAMTools SNP 358678 358678 35.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1021 SAMTools SNP 359122 359122 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1021 SAMTools SNP 359751 359751 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold1021 SAMTools SNP 360249 360249 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 360501 360501 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1021 SAMTools SNP 360506 360506 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 360509 360509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C46%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1021 SAMTools SNP 361346 361346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C44%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.00081%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1021 SAMTools SNP 369473 369473 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1021 SAMTools SNP 382143 382143 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold1021 SAMTools SNP 387108 387108 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C13%3BMQ%3D47%3BFQ%3D155%3BPV4%3D1%2C0.16%2C0.084%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C244:99 scaffold1021 SAMTools SNP 388630 388630 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold1021 SAMTools SNP 391291 391291 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D43%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C26:29 scaffold1021 SAMTools SNP 391332 391332 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold1021 SAMTools SNP 391383 391383 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C0.4%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C26:29 scaffold1021 SAMTools SNP 392933 392933 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C0.32%2C0.37%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C26:29 scaffold1021 SAMTools SNP 408980 408980 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1021 SAMTools SNP 409021 409021 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1021 SAMTools SNP 423639 423639 116 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold1021 SAMTools SNP 423641 423641 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1021 SAMTools SNP 443356 443356 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1021 SAMTools SNP 447217 447217 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1021 SAMTools SNP 447280 447280 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1021 SAMTools SNP 456565 456565 15.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1021 SAMTools SNP 456746 456746 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C1%2C5%3BMQ%3D26%3BFQ%3D51%3BPV4%3D0.28%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C146:81 scaffold1021 SAMTools SNP 457812 457812 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C16%3BMQ%3D29%3BFQ%3D45%3BPV4%3D1%2C0.21%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C180:75 scaffold1021 SAMTools SNP 458145 458145 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 461731 461731 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1021 SAMTools SNP 463003 463003 56.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C5%2C0:9 scaffold1021 SAMTools SNP 467962 467962 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1021 SAMTools SNP 473280 473280 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1021 SAMTools SNP 473288 473288 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1021 SAMTools SNP 486498 486498 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1021 SAMTools SNP 487685 487685 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 487702 487702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 489740 489740 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 495799 495799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.12%2C0.49%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1021 SAMTools SNP 495823 495823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.016%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1021 SAMTools SNP 495826 495826 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C25%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1021 SAMTools SNP 496495 496495 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.033%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1021 SAMTools SNP 496496 496496 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 496768 496768 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C41%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C2.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C253:99 scaffold1021 SAMTools SNP 497064 497064 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1021 SAMTools SNP 498942 498942 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C75%2C0:99 scaffold1021 SAMTools SNP 499055 499055 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.37%2C0.34%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C205:99 scaffold1021 SAMTools SNP 500843 500843 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 500852 500852 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 500968 500968 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold1021 SAMTools SNP 502248 502248 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold1021 SAMTools SNP 502275 502275 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1021 SAMTools SNP 502752 502752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1021 SAMTools SNP 502796 502796 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1021 SAMTools SNP 502802 502802 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1021 SAMTools SNP 504562 504562 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1021 SAMTools SNP 505082 505082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C14%2C9%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.08%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold1021 SAMTools SNP 506730 506730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1021 SAMTools SNP 506796 506796 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 506805 506805 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1021 SAMTools SNP 508158 508158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 508188 508188 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 509308 509308 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1021 SAMTools SNP 509332 509332 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1021 SAMTools SNP 509822 509822 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1021 SAMTools SNP 509850 509850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 510259 510259 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1021 SAMTools SNP 510283 510283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1021 SAMTools SNP 510591 510591 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1021 SAMTools SNP 510973 510973 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 513171 513171 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1021 SAMTools SNP 538711 538711 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 538751 538751 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 538756 538756 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 553241 553241 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 553313 553313 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1021 SAMTools SNP 558530 558530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1021 SAMTools SNP 558598 558598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1021 SAMTools SNP 564741 564741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1021 SAMTools SNP 564744 564744 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1021 SAMTools SNP 566638 566638 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C48%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1021 SAMTools SNP 566714 566714 46.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1021 SAMTools SNP 573436 573436 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C2.6e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C254:99 scaffold1021 SAMTools SNP 573672 573672 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1021 SAMTools SNP 576173 576173 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.59%2C1%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1021 SAMTools SNP 576229 576229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1021 SAMTools SNP 576348 576348 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1021 SAMTools SNP 576350 576350 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.01%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1021 SAMTools SNP 576352 576352 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1021 SAMTools SNP 586507 586507 40.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1021 SAMTools SNP 591382 591382 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1021 SAMTools SNP 599047 599047 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 599050 599050 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1021 SAMTools SNP 599055 599055 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 600832 600832 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 696681 696681 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 697519 697519 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 709748 709748 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1021 SAMTools SNP 709751 709751 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1021 SAMTools SNP 710676 710676 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1021 SAMTools SNP 710687 710687 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1021 SAMTools SNP 714974 714974 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1021 SAMTools SNP 715775 715775 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1021 SAMTools SNP 715783 715783 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1021 SAMTools SNP 717460 717460 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1021 SAMTools SNP 717478 717478 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1021 SAMTools SNP 727517 727517 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1021 SAMTools SNP 731208 731208 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1021 SAMTools SNP 731223 731223 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold1021 SAMTools SNP 731722 731722 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold1021 SAMTools SNP 757791 757791 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1024 SAMTools SNP 326 326 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1024 SAMTools SNP 855 855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1024 SAMTools SNP 882 882 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1024 SAMTools SNP 923 923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 5427 5427 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 5932 5932 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 5972 5972 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1024 SAMTools SNP 6015 6015 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D1%2C0.05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C80:68 scaffold1024 SAMTools SNP 6339 6339 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 6454 6454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1024 SAMTools SNP 8107 8107 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1024 SAMTools SNP 8145 8145 173 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C69%2C0%2C199%2C48%2C196:99 scaffold1024 SAMTools SNP 8172 8172 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1024 SAMTools SNP 8617 8617 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 64109 64109 43.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1024 SAMTools SNP 64164 64164 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1024 SAMTools SNP 66792 66792 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1024 SAMTools SNP 67432 67432 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1024 SAMTools SNP 208420 208420 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1024 SAMTools SNP 208432 208432 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1024 SAMTools SNP 213080 213080 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1024 SAMTools SNP 216410 216410 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 216446 216446 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 216467 216467 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 217124 217124 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1024 SAMTools SNP 217253 217253 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C132%2C0:99 scaffold1024 SAMTools SNP 217337 217337 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C20%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.085%2C3.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1024 SAMTools SNP 218006 218006 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.37%2C1.5e-16%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C137:99 scaffold1024 SAMTools SNP 218182 218182 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1024 SAMTools SNP 224595 224595 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1024 SAMTools SNP 226121 226121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 228109 228109 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C47%2C55%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 228577 228577 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C46%2C51%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 228631 228631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C71%2C5%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 229707 229707 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 238311 238311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 239918 239918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C5%2C62%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 241632 241632 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1024 SAMTools SNP 241647 241647 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C11%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.41%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1024 SAMTools SNP 246733 246733 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1024 SAMTools SNP 246881 246881 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.058%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1024 SAMTools SNP 249904 249904 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C132%2C2%2C152%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C5.5e-267%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1024 SAMTools SNP 249913 249913 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C151%2C1%2C130%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C4.1e-191%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 250166 250166 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold1024 SAMTools SNP 250461 250461 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.029%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C175:99 scaffold1024 SAMTools SNP 251747 251747 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1024 SAMTools SNP 252779 252779 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C5%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.26%2C0.42%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1024 SAMTools SNP 252780 252780 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C5%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.27%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1024 SAMTools SNP 256389 256389 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 256905 256905 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 258111 258111 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.012%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 258578 258578 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 258587 258587 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.063%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1024 SAMTools SNP 258608 258608 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 258650 258650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C29%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1024 SAMTools SNP 268886 268886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1024 SAMTools SNP 273592 273592 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C4.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1024 SAMTools SNP 274357 274357 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 274884 274884 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.5%2C0.055%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C157:44 scaffold1024 SAMTools SNP 275968 275968 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1024 SAMTools SNP 281409 281409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 301830 301830 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C0.0048%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1024 SAMTools SNP 342736 342736 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1024 SAMTools SNP 347505 347505 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 353398 353398 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 376897 376897 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C98:34 scaffold1024 SAMTools SNP 379061 379061 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1024 SAMTools SNP 379164 379164 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold1024 SAMTools SNP 380386 380386 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 380422 380422 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1024 SAMTools SNP 380479 380479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 381089 381089 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1024 SAMTools SNP 381126 381126 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1024 SAMTools SNP 381424 381424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1024 SAMTools SNP 381463 381463 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.03%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1024 SAMTools SNP 423781 423781 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1024 SAMTools SNP 424575 424575 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1024 SAMTools SNP 424626 424626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 424629 424629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 425085 425085 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 425643 425643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 426291 426291 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 426312 426312 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 426622 426622 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 427077 427077 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 427078 427078 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428669 428669 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428687 428687 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 428737 428737 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 429081 429081 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C38:41 scaffold1024 SAMTools SNP 429096 429096 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 429105 429105 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1024 SAMTools SNP 429132 429132 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold1024 SAMTools SNP 429490 429490 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 429526 429526 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 430128 430128 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 430177 430177 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1024 SAMTools SNP 432805 432805 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 432810 432810 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1024 SAMTools SNP 437219 437219 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.061%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1024 SAMTools SNP 437282 437282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1024 SAMTools SNP 439449 439449 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 439467 439467 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C64:67 scaffold1024 SAMTools SNP 439883 439883 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 439892 439892 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 440173 440173 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 440725 440725 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1024 SAMTools SNP 446076 446076 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 446346 446346 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1024 SAMTools SNP 447360 447360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1024 SAMTools SNP 447651 447651 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1024 SAMTools SNP 447729 447729 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 447731 447731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 447739 447739 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1024 SAMTools SNP 447958 447958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1024 SAMTools SNP 447985 447985 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C171:99 scaffold1024 SAMTools SNP 448001 448001 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold1024 SAMTools SNP 448219 448219 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1024 SAMTools SNP 448243 448243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1024 SAMTools SNP 448421 448421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 448561 448561 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1024 SAMTools SNP 449269 449269 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1024 SAMTools SNP 449319 449319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 463003 463003 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1024 SAMTools SNP 464188 464188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 465451 465451 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1024 SAMTools SNP 466276 466276 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 469720 469720 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 470191 470191 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1024 SAMTools SNP 470210 470210 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold1024 SAMTools SNP 474043 474043 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1024 SAMTools SNP 474044 474044 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0037%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1024 SAMTools SNP 474287 474287 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1024 SAMTools SNP 474292 474292 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1024 SAMTools SNP 475131 475131 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1024 SAMTools SNP 479333 479333 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1024 SAMTools SNP 479468 479468 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 479482 479482 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 495853 495853 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0042%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1024 SAMTools SNP 495899 495899 61.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C15%2C0:27 scaffold1024 SAMTools SNP 496636 496636 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C157%2C0:99 scaffold1024 SAMTools SNP 497180 497180 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C45%2C0:82 scaffold1024 SAMTools SNP 505515 505515 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1024 SAMTools SNP 569083 569083 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 577719 577719 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 577749 577749 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 577809 577809 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 577814 577814 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 578541 578541 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 578550 578550 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 579075 579075 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 579113 579113 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1024 SAMTools SNP 579363 579363 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1024 SAMTools SNP 579738 579738 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1024 SAMTools SNP 579752 579752 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1024 SAMTools SNP 581297 581297 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 581320 581320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 583528 583528 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1024 SAMTools SNP 583615 583615 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 584061 584061 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 593816 593816 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C8%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.71%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1024 SAMTools SNP 594313 594313 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1024 SAMTools SNP 594349 594349 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1024 SAMTools SNP 594810 594810 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1024 SAMTools SNP 598702 598702 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 598704 598704 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 600664 600664 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.3e-11%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C238:41 scaffold1024 SAMTools SNP 601073 601073 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 601099 601099 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1024 SAMTools SNP 601355 601355 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1024 SAMTools SNP 601364 601364 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1024 SAMTools SNP 601451 601451 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 631475 631475 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1024 SAMTools SNP 631623 631623 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1024 SAMTools SNP 648871 648871 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 654313 654313 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 656499 656499 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C5%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.08%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1024 SAMTools SNP 656525 656525 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C7%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.015%2C1.7e-06%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1024 SAMTools SNP 657590 657590 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.21%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1024 SAMTools SNP 657734 657734 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C188:62 scaffold1024 SAMTools SNP 657773 657773 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1024 SAMTools SNP 658213 658213 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C51%2C0:99 scaffold1024 SAMTools SNP 658367 658367 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1024 SAMTools SNP 663241 663241 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1024 SAMTools SNP 663314 663314 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1024 SAMTools SNP 663331 663331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.067%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1024 SAMTools SNP 663364 663364 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 665367 665367 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C31%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C214:99 scaffold1024 SAMTools SNP 667208 667208 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C135%2C0:99 scaffold1024 SAMTools SNP 668866 668866 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1396%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1024 SAMTools SNP 668975 668975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1668%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C574%2C145%2C787%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00092%2C8.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 669541 669541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C8.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 669547 669547 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C5%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1024 SAMTools SNP 669613 669613 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C16%2C13%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C3.3e-17%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1024 SAMTools SNP 669634 669634 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C19%2C31%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1024 SAMTools SNP 671868 671868 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C91%2C107%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 673733 673733 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D2.8e-05%2C0.034%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1024 SAMTools SNP 675312 675312 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C69%2C29%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1e-05%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1024 SAMTools SNP 675333 675333 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 675983 675983 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C52%2C35%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D2.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1024 SAMTools SNP 676354 676354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C53%2C9%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 676633 676633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C69%2C20%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 677936 677936 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C99%2C59%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-09%2C0.14%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 678254 678254 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C45%2C9%2C10%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.62%2C1.6e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1024 SAMTools SNP 680036 680036 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.43%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 680044 680044 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.41%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 681548 681548 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D46%2C89%2C1%2C45%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D3.3e-06%2C2.1e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1024 SAMTools SNP 682304 682304 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1024 SAMTools SNP 682763 682763 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 682784 682784 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C110%2C4%2C27%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.004%2C1%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1024 SAMTools SNP 682797 682797 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C114%2C8%2C34%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.005%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1024 SAMTools SNP 688269 688269 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C59%2C15%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 688280 688280 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C60%2C15%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1024 SAMTools SNP 691045 691045 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1024 SAMTools SNP 722142 722142 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 722182 722182 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 722188 722188 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 722636 722636 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1024 SAMTools SNP 724449 724449 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.00021%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C127:70 scaffold1024 SAMTools SNP 728516 728516 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1024 SAMTools SNP 728952 728952 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C135%2C0:99 scaffold1024 SAMTools SNP 730260 730260 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1024 SAMTools SNP 730437 730437 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1024 SAMTools SNP 730466 730466 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 730468 730468 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1024 SAMTools SNP 730503 730503 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1024 SAMTools SNP 731047 731047 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C0:57 scaffold1024 SAMTools SNP 732115 732115 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.59%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1024 SAMTools SNP 732202 732202 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.016%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C247:47 scaffold1024 SAMTools SNP 733929 733929 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 734035 734035 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.6e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold1024 SAMTools SNP 734384 734384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1024 SAMTools SNP 738965 738965 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C13%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.3%2C9.6e-07%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1024 SAMTools SNP 760898 760898 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 761497 761497 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 761591 761591 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 777813 777813 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 777957 777957 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 779807 779807 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 780211 780211 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1024 SAMTools SNP 783286 783286 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1024 SAMTools SNP 783293 783293 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1024 SAMTools SNP 789985 789985 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 790655 790655 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1024 SAMTools SNP 791328 791328 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1024 SAMTools SNP 792043 792043 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold1024 SAMTools SNP 800745 800745 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 800767 800767 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 801990 801990 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 809444 809444 27.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1024 SAMTools SNP 811672 811672 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1024 SAMTools SNP 812878 812878 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C69%2C0:99 scaffold1024 SAMTools SNP 817425 817425 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1024 SAMTools SNP 818194 818194 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold1024 SAMTools SNP 818743 818743 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1024 SAMTools SNP 818750 818750 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 818759 818759 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1024 SAMTools SNP 818795 818795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1024 SAMTools SNP 820573 820573 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 820751 820751 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1024 SAMTools SNP 822112 822112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 826776 826776 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.19%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1024 SAMTools SNP 849158 849158 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C27%2C0:51 scaffold1024 SAMTools SNP 849398 849398 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C58:61 scaffold1024 SAMTools SNP 849896 849896 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 852324 852324 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 852370 852370 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 852540 852540 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 858520 858520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 858523 858523 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 858589 858589 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 858899 858899 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1024 SAMTools SNP 858912 858912 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C0.44%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1024 SAMTools SNP 859095 859095 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1024 SAMTools SNP 859131 859131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C29%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1024 SAMTools SNP 859167 859167 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 859344 859344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1024 SAMTools SNP 859679 859679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1024 SAMTools SNP 859930 859930 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 859951 859951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1024 SAMTools SNP 860311 860311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 860403 860403 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1024 SAMTools SNP 860832 860832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 861185 861185 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1024 SAMTools SNP 861245 861245 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 861293 861293 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.014%2C0.099%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1024 SAMTools SNP 861731 861731 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1024 SAMTools SNP 861779 861779 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1024 SAMTools SNP 861818 861818 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 861835 861835 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1024 SAMTools SNP 862821 862821 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1024 SAMTools SNP 862866 862866 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1024 SAMTools SNP 862881 862881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 862917 862917 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1024 SAMTools SNP 863162 863162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 869555 869555 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 885005 885005 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 928459 928459 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 928747 928747 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 934943 934943 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1024 SAMTools SNP 934968 934968 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold1024 SAMTools SNP 935446 935446 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0049%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1024 SAMTools SNP 935537 935537 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1024 SAMTools SNP 993956 993956 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 998623 998623 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 998732 998732 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1005045 1005045 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1024 SAMTools SNP 1026257 1026257 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1026482 1026482 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1026773 1026773 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C218:99 scaffold1024 SAMTools SNP 1026782 1026782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1024 SAMTools SNP 1026800 1026800 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1024 SAMTools SNP 1030475 1030475 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1024 SAMTools SNP 1031257 1031257 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1024 SAMTools SNP 1031654 1031654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C38%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1031663 1031663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1032028 1032028 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C172%2C0:99 scaffold1024 SAMTools SNP 1034499 1034499 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1024 SAMTools SNP 1040025 1040025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1024 SAMTools SNP 1040070 1040070 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 1040798 1040798 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 1040801 1040801 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1024 SAMTools SNP 1040981 1040981 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C40%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.25%2C8.4e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1024 SAMTools SNP 1041092 1041092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C51%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1024 SAMTools SNP 1041107 1041107 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C24%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C40%2C0:55 scaffold1024 SAMTools SNP 1041122 1041122 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 1041125 1041125 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold1024 SAMTools SNP 1041136 1041136 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1024 SAMTools SNP 1049267 1049267 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 1049270 1049270 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1049375 1049375 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1024 SAMTools SNP 1050871 1050871 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1024 SAMTools SNP 1050877 1050877 73 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C86%2C77%2C106%2C0%2C100:16 scaffold1024 SAMTools SNP 1050913 1050913 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1024 SAMTools SNP 1050919 1050919 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1024 SAMTools SNP 1051238 1051238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1051250 1051250 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.00049%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1024 SAMTools SNP 1051253 1051253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1024 SAMTools SNP 1052372 1052372 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1052428 1052428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 1053120 1053120 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold1024 SAMTools SNP 1053162 1053162 88.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold1024 SAMTools SNP 1053551 1053551 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1024 SAMTools SNP 1083978 1083978 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1024 SAMTools SNP 1091253 1091253 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C27%2C0:51 scaffold1024 SAMTools SNP 1109542 1109542 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C3%2C32%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.11%2C1%2C1.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1024 SAMTools SNP 1109566 1109566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C26%2C76%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1112737 1112737 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold1024 SAMTools SNP 1112793 1112793 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1112798 1112798 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C124:42 scaffold1024 SAMTools SNP 1112819 1112819 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1024 SAMTools SNP 1117358 1117358 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 1117382 1117382 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1024 SAMTools SNP 1117469 1117469 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold1024 SAMTools SNP 1117472 1117472 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C0.21%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1024 SAMTools SNP 1117900 1117900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1024 SAMTools SNP 1117908 1117908 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1024 SAMTools SNP 1117941 1117941 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.059%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1024 SAMTools SNP 1119524 1119524 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1024 SAMTools SNP 1120107 1120107 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C5%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.00082%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1024 SAMTools SNP 1120670 1120670 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0005%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1024 SAMTools SNP 1120688 1120688 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0016%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 1122657 1122657 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1122693 1122693 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1024 SAMTools SNP 1123012 1123012 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1024 SAMTools SNP 1124703 1124703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C17%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1024 SAMTools SNP 1125018 1125018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1125051 1125051 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C18%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.26%2C1.3e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1024 SAMTools SNP 1125465 1125465 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1024 SAMTools SNP 1125467 1125467 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 1125557 1125557 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1024 SAMTools SNP 1126003 1126003 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D3%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.17%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold1024 SAMTools SNP 1127349 1127349 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C38%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.28%2C0.31%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold1024 SAMTools SNP 1127490 1127490 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C24%2C0:45 scaffold1024 SAMTools SNP 1128212 1128212 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.35%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold1024 SAMTools SNP 1128858 1128858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C24%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold1024 SAMTools SNP 1129284 1129284 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C7%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.036%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1024 SAMTools SNP 1129299 1129299 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1024 SAMTools SNP 1129862 1129862 164 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D3e-05%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1024 SAMTools SNP 1145666 1145666 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1024 SAMTools SNP 1146019 1146019 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1024 SAMTools SNP 1146040 1146040 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1024 SAMTools SNP 1146554 1146554 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C251:99 scaffold1024 SAMTools SNP 1146609 1146609 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 1147533 1147533 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1148533 1148533 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1149610 1149610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.38%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1024 SAMTools SNP 1150327 1150327 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.35%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1150914 1150914 113 . . REF=N;ALT=C,T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C46%2C34%2C140%2C0%2C137%2C140%2C0%2C97%2C137:21 scaffold1024 SAMTools SNP 1155276 1155276 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C9%2C0:16 scaffold1024 SAMTools SNP 1161199 1161199 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1161238 1161238 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 1162852 1162852 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.27%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1024 SAMTools SNP 1163036 1163036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C6%3BMQ%3D50%3BFQ%3D-132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1024 SAMTools SNP 1163066 1163066 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.016%2C0.0084%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1024 SAMTools SNP 1163174 1163174 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1024 SAMTools SNP 1163341 1163341 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.55%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1024 SAMTools SNP 1220543 1220543 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1243735 1243735 22.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1024 SAMTools SNP 1243903 1243903 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1024 SAMTools SNP 1244038 1244038 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1024 SAMTools SNP 1244184 1244184 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1244207 1244207 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold1024 SAMTools SNP 1253612 1253612 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C62%2C0%2C23%3BMQ%3D49%3BFQ%3D121%3BPV4%3D0.33%2C1%2C0.21%2C6.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1024 SAMTools SNP 1253633 1253633 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1253648 1253648 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C7%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.34%2C2.3e-20%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1024 SAMTools SNP 1253741 1253741 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C18%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1024 SAMTools SNP 1253959 1253959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C313%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 1254226 1254226 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C6%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1255343 1255343 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C32%2C0%2C18%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00014%2C1%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1024 SAMTools SNP 1255347 1255347 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.00051%2C0.45%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1024 SAMTools SNP 1255352 1255352 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1024 SAMTools SNP 1255354 1255354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C26%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00042%2C0.47%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1024 SAMTools SNP 1255357 1255357 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C68:99 scaffold1024 SAMTools SNP 1255396 1255396 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1024 SAMTools SNP 1255465 1255465 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C53%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C211%2C0:99 scaffold1024 SAMTools SNP 1255486 1255486 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C9:12 scaffold1024 SAMTools SNP 1256012 1256012 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.1%2C0.28%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold1024 SAMTools SNP 1256175 1256175 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C15%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1024 SAMTools SNP 1256214 1256214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1256531 1256531 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C16%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1256594 1256594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C22%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1256770 1256770 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C15%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1256776 1256776 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1256803 1256803 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C52%2C1%2C18%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1024 SAMTools SNP 1261459 1261459 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 1261945 1261945 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1024 SAMTools SNP 1262011 1262011 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1262272 1262272 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C26%2C51%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C0.0017%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1262318 1262318 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C39%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1262607 1262607 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C37%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1024 SAMTools SNP 1262675 1262675 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C7%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0068%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1024 SAMTools SNP 1262974 1262974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C45%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1024 SAMTools SNP 1263144 1263144 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1024 SAMTools SNP 1263192 1263192 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.29%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1024 SAMTools SNP 1263537 1263537 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C23%2C30%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0017%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1024 SAMTools SNP 1263732 1263732 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1263997 1263997 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C62%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1024 SAMTools SNP 1264933 1264933 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C98%2C46%2C95%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.4%2C1.4e-202%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1024 SAMTools SNP 1265544 1265544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C23%2C79%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1265753 1265753 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C83%2C2%2C33%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.015%2C1%2C1%2C6.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1024 SAMTools SNP 1266294 1266294 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.00086%2C0.29%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1024 SAMTools SNP 1266295 1266295 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1024 SAMTools SNP 1266321 1266321 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C31%2C3%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.64%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1024 SAMTools SNP 1266466 1266466 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C8%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1266496 1266496 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1024 SAMTools SNP 1266523 1266523 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1266544 1266544 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C41%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1266958 1266958 153 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C45%2C0%2C173%2C11%2C167:87 scaffold1024 SAMTools SNP 1266991 1266991 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C31%2C13%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.024%2C5.2e-39%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1024 SAMTools SNP 1267090 1267090 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C15%2C4%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.64%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1024 SAMTools SNP 1267105 1267105 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C64%2C12%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1267589 1267589 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C6.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1267759 1267759 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C54%2C35%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1267792 1267792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C54%2C14%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1267882 1267882 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C24%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1268237 1268237 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C181%2C130%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.42%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1024 SAMTools SNP 1268442 1268442 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C49%2C4%2C39%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1.4e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1024 SAMTools SNP 1268475 1268475 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C12%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.6%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold1024 SAMTools SNP 1268550 1268550 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C37%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.083%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1268860 1268860 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C22%2C12%2C24%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1.1e-11%2C3.9e-05%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1024 SAMTools SNP 1269309 1269309 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C41%2C18%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-10%2C1%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1269333 1269333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1024 SAMTools SNP 1269383 1269383 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C87%2C9%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1270024 1270024 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1024 SAMTools SNP 1270893 1270893 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C58%2C33%2C45%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.34%2C5e-114%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1024 SAMTools SNP 1270908 1270908 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C81%2C25%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-62%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1271386 1271386 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C151%2C25%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-05%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1271548 1271548 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C10%2C35%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1271994 1271994 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C50%2C6%2C39%3BMQ%3D50%3BFQ%3D139%3BPV4%3D6.8e-08%2C3.6e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1024 SAMTools SNP 1272492 1272492 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C70%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1272534 1272534 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C32%2C26%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1272743 1272743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C31%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C5.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1273154 1273154 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D90%2C48%2C47%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1.1e-07%2C1.1e-09%2C1%2C4.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1024 SAMTools SNP 1273164 1273164 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C118%2C53%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D3.3e-34%2C2.5e-37%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1024 SAMTools SNP 1275195 1275195 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 1275354 1275354 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.63%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1024 SAMTools SNP 1276154 1276154 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 1276288 1276288 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C154:99 scaffold1024 SAMTools SNP 1276387 1276387 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold1024 SAMTools SNP 1276618 1276618 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.28%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1024 SAMTools SNP 1276673 1276673 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1276829 1276829 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1276844 1276844 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 1276859 1276859 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1277329 1277329 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1277362 1277362 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 1277684 1277684 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 1277690 1277690 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1024 SAMTools SNP 1283784 1283784 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1284075 1284075 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1024 SAMTools SNP 1284087 1284087 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1024 SAMTools SNP 1284680 1284680 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1284718 1284718 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 1284780 1284780 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1024 SAMTools SNP 1285646 1285646 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1024 SAMTools SNP 1285973 1285973 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1024 SAMTools SNP 1288813 1288813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1024 SAMTools SNP 1294944 1294944 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C2%2C46%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1024 SAMTools SNP 1295195 1295195 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C31%2C17%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1295652 1295652 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1296109 1296109 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1296833 1296833 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1024 SAMTools SNP 1297032 1297032 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1024 SAMTools SNP 1297079 1297079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.47%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1297481 1297481 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C14%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1024 SAMTools SNP 1297535 1297535 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1024 SAMTools SNP 1297543 1297543 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1024 SAMTools SNP 1297634 1297634 49.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold1024 SAMTools SNP 1297660 1297660 45.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold1024 SAMTools SNP 1297824 1297824 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C24%2C0:44 scaffold1024 SAMTools SNP 1298335 1298335 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.37%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C7%2C0:12 scaffold1024 SAMTools SNP 1298853 1298853 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1024 SAMTools SNP 1298946 1298946 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1024 SAMTools SNP 1299377 1299377 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold1024 SAMTools SNP 1300052 1300052 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1301370 1301370 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1301430 1301430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1024 SAMTools SNP 1303479 1303479 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.036%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1024 SAMTools SNP 1304165 1304165 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C7.8e-17%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1024 SAMTools SNP 1304544 1304544 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1024 SAMTools SNP 1305045 1305045 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C188:43 scaffold1024 SAMTools SNP 1305324 1305324 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C47%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C184%2C0:99 scaffold1024 SAMTools SNP 1309644 1309644 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C53%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1310377 1310377 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C0%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1310595 1310595 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C196:30 scaffold1024 SAMTools SNP 1310680 1310680 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.49%2C4.8e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1024 SAMTools SNP 1312376 1312376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C34%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1024 SAMTools SNP 1312635 1312635 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1024 SAMTools SNP 1312915 1312915 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1313098 1313098 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1317888 1317888 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1024 SAMTools SNP 1318416 1318416 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C18%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.69%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1024 SAMTools SNP 1319228 1319228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1319250 1319250 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1320803 1320803 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C11%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1024 SAMTools SNP 1320926 1320926 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C39%2C10%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1024 SAMTools SNP 1320968 1320968 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C41%2C9%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D7.3e-05%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1024 SAMTools SNP 1321437 1321437 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1321461 1321461 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.056%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1024 SAMTools SNP 1323047 1323047 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.56%2C3.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1024 SAMTools SNP 1323862 1323862 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1024 SAMTools SNP 1324488 1324488 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1024 SAMTools SNP 1324864 1324864 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1024 SAMTools SNP 1324893 1324893 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.073%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C142:99 scaffold1024 SAMTools SNP 1325090 1325090 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.54%2C0.3%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1024 SAMTools SNP 1325109 1325109 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.063%2C6.4e-07%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1024 SAMTools SNP 1325186 1325186 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1024 SAMTools SNP 1325198 1325198 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1024 SAMTools SNP 1325452 1325452 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1325539 1325539 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1024 SAMTools SNP 1327148 1327148 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C16%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1024 SAMTools SNP 1327399 1327399 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C27%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1024 SAMTools SNP 1327402 1327402 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C247:99 scaffold1024 SAMTools SNP 1328221 1328221 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.013%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1024 SAMTools SNP 1328468 1328468 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.088%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1024 SAMTools SNP 1329322 1329322 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.31%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1024 SAMTools SNP 1330022 1330022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.068%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1024 SAMTools SNP 1330054 1330054 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1330557 1330557 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C6%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1024 SAMTools SNP 1330995 1330995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1024 SAMTools SNP 1331010 1331010 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1024 SAMTools SNP 1332028 1332028 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C4.6e-16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C132:99 scaffold1024 SAMTools SNP 1332112 1332112 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1024 SAMTools SNP 1332211 1332211 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1024 SAMTools SNP 1332492 1332492 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1024 SAMTools SNP 1332506 1332506 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1024 SAMTools SNP 1332868 1332868 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1024 SAMTools SNP 1332886 1332886 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold1024 SAMTools SNP 1333386 1333386 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1024 SAMTools SNP 1333425 1333425 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1024 SAMTools SNP 1333907 1333907 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-05%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1333987 1333987 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold1024 SAMTools SNP 1334019 1334019 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C8%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.084%2C0.058%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1024 SAMTools SNP 1334311 1334311 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C44%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1334341 1334341 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1334371 1334371 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C14%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1334374 1334374 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C3%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.032%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1334559 1334559 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C43%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1024 SAMTools SNP 1335009 1335009 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1024 SAMTools SNP 1335110 1335110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C12%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1024 SAMTools SNP 1335331 1335331 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C14%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1024 SAMTools SNP 1336237 1336237 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C1%2C18%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.02%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1024 SAMTools SNP 1336480 1336480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.023%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1024 SAMTools SNP 1336483 1336483 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.11%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1024 SAMTools SNP 1336555 1336555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold1024 SAMTools SNP 1337433 1337433 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.33%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1024 SAMTools SNP 1337466 1337466 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1024 SAMTools SNP 1337475 1337475 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1024 SAMTools SNP 1339763 1339763 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold1024 SAMTools SNP 1340053 1340053 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 1340082 1340082 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 1347796 1347796 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1024 SAMTools SNP 1347807 1347807 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1348862 1348862 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1348914 1348914 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1350436 1350436 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.19%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1024 SAMTools SNP 1350505 1350505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1024 SAMTools SNP 1350601 1350601 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1024 SAMTools SNP 1351760 1351760 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.005%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1352749 1352749 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0052%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1024 SAMTools SNP 1352753 1352753 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1024 SAMTools SNP 1353249 1353249 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1024 SAMTools SNP 1356855 1356855 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C11%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C160%2C0:99 scaffold1024 SAMTools SNP 1356945 1356945 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C5%2C32%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.69%2C3.5e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1024 SAMTools SNP 1362958 1362958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1024 SAMTools SNP 1363344 1363344 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.44%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold1024 SAMTools SNP 1363723 1363723 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1364921 1364921 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1024 SAMTools SNP 1364948 1364948 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1024 SAMTools SNP 1370843 1370843 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold1024 SAMTools SNP 1370900 1370900 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1024 SAMTools SNP 1370927 1370927 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1024 SAMTools SNP 1371305 1371305 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1024 SAMTools SNP 1371419 1371419 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1024 SAMTools SNP 1371866 1371866 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1024 SAMTools SNP 1372091 1372091 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C6%2C7%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.38%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1024 SAMTools SNP 1372181 1372181 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.52%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C138:99 scaffold1024 SAMTools SNP 1373865 1373865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1024 SAMTools SNP 1373923 1373923 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold1024 SAMTools SNP 1374213 1374213 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1374282 1374282 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.073%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1024 SAMTools SNP 1374744 1374744 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1374748 1374748 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 1374787 1374787 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1024 SAMTools SNP 1375248 1375248 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1024 SAMTools SNP 1376095 1376095 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C8.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C243:99 scaffold1024 SAMTools SNP 1376480 1376480 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C243%2C40%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-07%2C1.1e-99%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1376618 1376618 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C23%2C77%2C130%3BMQ%3D50%3BFQ%3D-229%3BPV4%3D0.43%2C0.00045%2C1%2C4.1e-12;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C202%2C0:99 scaffold1024 SAMTools SNP 1376716 1376716 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C87%2C0:99 scaffold1024 SAMTools SNP 1380874 1380874 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1024 SAMTools SNP 1380904 1380904 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C15%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.54%2C0.029%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1024 SAMTools SNP 1381206 1381206 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1024 SAMTools SNP 1382342 1382342 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C9%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.054%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1024 SAMTools SNP 1382722 1382722 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1382740 1382740 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0028%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1382845 1382845 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.68%2C4.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1024 SAMTools SNP 1382893 1382893 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C6%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1024 SAMTools SNP 1383179 1383179 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1024 SAMTools SNP 1384034 1384034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1384096 1384096 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1384247 1384247 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1384416 1384416 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1384613 1384613 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1024 SAMTools SNP 1384873 1384873 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C2.1e-14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1024 SAMTools SNP 1384894 1384894 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D32%3BPV4%3D7e-05%2C4.2e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1024 SAMTools SNP 1385050 1385050 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1024 SAMTools SNP 1385842 1385842 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold1024 SAMTools SNP 1386611 1386611 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1387169 1387169 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1387175 1387175 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1387213 1387213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C13%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.47%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold1024 SAMTools SNP 1387607 1387607 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1024 SAMTools SNP 1387896 1387896 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C27%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.49%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C34%2C0:65 scaffold1024 SAMTools SNP 1387959 1387959 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1388206 1388206 57.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold1024 SAMTools SNP 1390629 1390629 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C114%2C0:99 scaffold1024 SAMTools SNP 1391252 1391252 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1024 SAMTools SNP 1391296 1391296 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1024 SAMTools SNP 1391514 1391514 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C57%2C0:99 scaffold1024 SAMTools SNP 1391580 1391580 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C35:38 scaffold1024 SAMTools SNP 1391586 1391586 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1024 SAMTools SNP 1391903 1391903 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.1%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1024 SAMTools SNP 1392172 1392172 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1392186 1392186 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C2%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0033%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1024 SAMTools SNP 1392211 1392211 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C3%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1024 SAMTools SNP 1392516 1392516 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C25%2C0%2C12%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1.9e-05%2C1%2C1%2C5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1024 SAMTools SNP 1392561 1392561 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1024 SAMTools SNP 1392565 1392565 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1024 SAMTools SNP 1392738 1392738 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1024 SAMTools SNP 1392851 1392851 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold1024 SAMTools SNP 1392879 1392879 16.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1024 SAMTools SNP 1392901 1392901 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C51%2C0:99 scaffold1024 SAMTools SNP 1393814 1393814 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C99%2C0:99 scaffold1024 SAMTools SNP 1394379 1394379 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C255%2C0:99 scaffold1024 SAMTools SNP 1394565 1394565 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C7%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C205%2C0:99 scaffold1024 SAMTools SNP 1395616 1395616 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C48%2C0:93 scaffold1024 SAMTools SNP 1396336 1396336 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold1024 SAMTools SNP 1396471 1396471 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1396839 1396839 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1397318 1397318 32.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1024 SAMTools SNP 1397324 1397324 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1024 SAMTools SNP 1397534 1397534 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1024 SAMTools SNP 1398002 1398002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C30%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1024 SAMTools SNP 1398017 1398017 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold1024 SAMTools SNP 1398116 1398116 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1024 SAMTools SNP 1398337 1398337 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C25%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.5%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold1024 SAMTools SNP 1398391 1398391 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D206%3BPV4%3D5.4e-10%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1024 SAMTools SNP 1398410 1398410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1399103 1399103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1024 SAMTools SNP 1399319 1399319 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 1399328 1399328 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1024 SAMTools SNP 1399503 1399503 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1400140 1400140 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C127:99 scaffold1024 SAMTools SNP 1400161 1400161 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1024 SAMTools SNP 1400171 1400171 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1024 SAMTools SNP 1400397 1400397 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.57%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C154:99 scaffold1024 SAMTools SNP 1400421 1400421 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1024 SAMTools SNP 1400490 1400490 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1024 SAMTools SNP 1401608 1401608 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D39.5%3BPV4%3D0.067%2C0.00025%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C76:69 scaffold1024 SAMTools SNP 1401647 1401647 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.027%2C0.49%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1024 SAMTools SNP 1401707 1401707 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1024 SAMTools SNP 1401904 1401904 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C201:99 scaffold1024 SAMTools SNP 1401979 1401979 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1401997 1401997 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1024 SAMTools SNP 1402018 1402018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1402155 1402155 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1024 SAMTools SNP 1403375 1403375 67 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C30%2C1%3BMQ%3D48%3BFQ%3D-89%3BPV4%3D1%2C4e-28%2C1%2C2e-14;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C62%2C0%2C105%2C77%2C99:99 scaffold1024 SAMTools SNP 1405638 1405638 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold1024 SAMTools SNP 1412114 1412114 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C123%2C0:99 scaffold1024 SAMTools SNP 1413039 1413039 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.019%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1024 SAMTools SNP 1416098 1416098 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1418853 1418853 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1418886 1418886 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1419352 1419352 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.47%2C0.0013%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C150:99 scaffold1024 SAMTools SNP 1419355 1419355 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C211:99 scaffold1024 SAMTools SNP 1419370 1419370 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1024 SAMTools SNP 1425242 1425242 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1426304 1426304 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold1024 SAMTools SNP 1426374 1426374 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1024 SAMTools SNP 1429563 1429563 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1435235 1435235 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D27%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C63%2C0:99 scaffold1024 SAMTools SNP 1442735 1442735 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1024 SAMTools SNP 1533179 1533179 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1024 SAMTools SNP 1533197 1533197 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1024 SAMTools SNP 1533211 1533211 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1562484 1562484 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1024 SAMTools SNP 1564060 1564060 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1564098 1564098 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1564918 1564918 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 1564923 1564923 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1024 SAMTools SNP 1564944 1564944 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1024 SAMTools SNP 1575444 1575444 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1024 SAMTools SNP 1575462 1575462 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.42%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1024 SAMTools SNP 1575772 1575772 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1024 SAMTools SNP 1575922 1575922 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1024 SAMTools SNP 1576068 1576068 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1024 SAMTools SNP 1639567 1639567 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1662840 1662840 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1662857 1662857 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1674719 1674719 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C9%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.018%2C0%2C0.33%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C60:63 scaffold1024 SAMTools SNP 1689181 1689181 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1689189 1689189 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1693601 1693601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C8%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1024 SAMTools SNP 1693624 1693624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1024 SAMTools SNP 1694092 1694092 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.54%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1024 SAMTools SNP 1694150 1694150 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1024 SAMTools SNP 1695623 1695623 48.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold1024 SAMTools SNP 1696044 1696044 38.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold1024 SAMTools SNP 1714728 1714728 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1024 SAMTools SNP 1715236 1715236 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1024 SAMTools SNP 1715247 1715247 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1024 SAMTools SNP 1726490 1726490 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1727328 1727328 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1024 SAMTools SNP 1727367 1727367 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1728479 1728479 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1024 SAMTools SNP 1728591 1728591 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1733182 1733182 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1024 SAMTools SNP 1763895 1763895 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1024 SAMTools SNP 1763969 1763969 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1024 SAMTools SNP 1764380 1764380 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1024 SAMTools SNP 1764425 1764425 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1024 SAMTools SNP 1764713 1764713 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1024 SAMTools SNP 1765509 1765509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C29%3BMQ%3D50%3BFQ%3D-108%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1024 SAMTools SNP 1766012 1766012 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1024 SAMTools SNP 1766315 1766315 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1024 SAMTools SNP 1768573 1768573 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C9.7e-11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C71:40 scaffold1024 SAMTools SNP 1768671 1768671 58.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1028 SAMTools SNP 17012 17012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1028 SAMTools SNP 19296 19296 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1028 SAMTools SNP 20901 20901 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1028 SAMTools SNP 20914 20914 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.021%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1028 SAMTools SNP 21276 21276 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1028 SAMTools SNP 23845 23845 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 24141 24141 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1028 SAMTools SNP 24173 24173 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1028 SAMTools SNP 24876 24876 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1028 SAMTools SNP 25329 25329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 26277 26277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1028 SAMTools SNP 26282 26282 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1028 SAMTools SNP 26489 26489 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1028 SAMTools SNP 26837 26837 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 26898 26898 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1028 SAMTools SNP 29914 29914 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1028 SAMTools SNP 31954 31954 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1028 SAMTools SNP 35653 35653 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1028 SAMTools SNP 75216 75216 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1028 SAMTools SNP 75323 75323 33.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1028 SAMTools SNP 75375 75375 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1028 SAMTools SNP 75690 75690 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1028 SAMTools SNP 75697 75697 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1028 SAMTools SNP 76670 76670 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1028 SAMTools SNP 81074 81074 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1028 SAMTools SNP 81398 81398 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1028 SAMTools SNP 84276 84276 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 84867 84867 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1028 SAMTools SNP 84886 84886 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1028 SAMTools SNP 85264 85264 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 86022 86022 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 87039 87039 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 90121 90121 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 90185 90185 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 90229 90229 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 109980 109980 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold1028 SAMTools SNP 128897 128897 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1028 SAMTools SNP 129897 129897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 129930 129930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1028 SAMTools SNP 129951 129951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1028 SAMTools SNP 138298 138298 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.041%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 138310 138310 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 138358 138358 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C41%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.29%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1028 SAMTools SNP 140425 140425 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C82%2C14%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 143357 143357 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 143753 143753 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C4%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.22%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1028 SAMTools SNP 143866 143866 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C9%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1028 SAMTools SNP 143900 143900 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold1028 SAMTools SNP 144498 144498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C25%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C8e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 144553 144553 73.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold1028 SAMTools SNP 146849 146849 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1028 SAMTools SNP 146865 146865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1028 SAMTools SNP 146947 146947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 147185 147185 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C6%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1028 SAMTools SNP 147231 147231 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1028 SAMTools SNP 148141 148141 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1028 SAMTools SNP 148224 148224 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1028 SAMTools SNP 148613 148613 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C10%2C9%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1028 SAMTools SNP 148622 148622 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C10%2C49%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C3.9e-23%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 148748 148748 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1028 SAMTools SNP 148782 148782 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C33%2C0:63 scaffold1028 SAMTools SNP 150256 150256 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1028 SAMTools SNP 153069 153069 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1028 SAMTools SNP 154169 154169 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1028 SAMTools SNP 155074 155074 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1028 SAMTools SNP 155109 155109 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1028 SAMTools SNP 155189 155189 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1028 SAMTools SNP 155822 155822 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1028 SAMTools SNP 155926 155926 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 156421 156421 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1028 SAMTools SNP 156432 156432 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1028 SAMTools SNP 156936 156936 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1028 SAMTools SNP 158129 158129 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1028 SAMTools SNP 158853 158853 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C3%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.13%2C0.017%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1028 SAMTools SNP 158856 158856 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1028 SAMTools SNP 158871 158871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1028 SAMTools SNP 158928 158928 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.35%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1028 SAMTools SNP 158958 158958 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1028 SAMTools SNP 159164 159164 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1028 SAMTools SNP 159170 159170 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1028 SAMTools SNP 159191 159191 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1028 SAMTools SNP 160214 160214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-06%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 161592 161592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C10%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D6.1e-07%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1028 SAMTools SNP 161604 161604 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C0%2C55%3BMQ%3D50%3BFQ%3D223%3BPV4%3D9.1e-07%2C0.021%2C1%2C9.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1028 SAMTools SNP 161654 161654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1028 SAMTools SNP 161771 161771 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.041%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C14:17 scaffold1028 SAMTools SNP 179937 179937 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1028 SAMTools SNP 198918 198918 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1028 SAMTools SNP 199011 199011 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C113:51 scaffold1028 SAMTools SNP 199213 199213 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C166:99 scaffold1028 SAMTools SNP 199458 199458 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C84%2C0:99 scaffold1028 SAMTools SNP 199522 199522 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C14%2C3%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.24%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1028 SAMTools SNP 203715 203715 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.28%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1028 SAMTools SNP 205634 205634 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0079%2C5.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C156:40 scaffold1028 SAMTools SNP 220200 220200 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1028 SAMTools SNP 221571 221571 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C205:99 scaffold1028 SAMTools SNP 221921 221921 27.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1028 SAMTools SNP 222026 222026 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C187:99 scaffold1028 SAMTools SNP 222198 222198 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1028 SAMTools SNP 223079 223079 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1028 SAMTools SNP 235302 235302 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1030 SAMTools SNP 1731 1731 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C15%2C0:27 scaffold1030 SAMTools SNP 1785 1785 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1030 SAMTools SNP 1806 1806 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.54%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C209:99 scaffold1030 SAMTools SNP 2187 2187 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1030 SAMTools SNP 43620 43620 24.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1031 SAMTools SNP 3796 3796 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 3821 3821 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1031 SAMTools SNP 3882 3882 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1031 SAMTools SNP 4845 4845 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 6797 6797 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1031 SAMTools SNP 45960 45960 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C0%2C173%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.089%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1031 SAMTools SNP 46801 46801 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C6%2C174%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 47079 47079 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.53%2C2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1031 SAMTools SNP 49712 49712 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 57652 57652 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 70294 70294 12 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1031 SAMTools SNP 70394 70394 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 72379 72379 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C20:23 scaffold1031 SAMTools SNP 72877 72877 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1031 SAMTools SNP 73287 73287 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1031 SAMTools SNP 73290 73290 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1031 SAMTools SNP 74219 74219 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1031 SAMTools SNP 113975 113975 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C12%2C9%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.15%2C7.3e-35%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1031 SAMTools SNP 124561 124561 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1031 SAMTools SNP 130750 130750 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 139254 139254 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 143764 143764 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0036%2C0.00041%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1031 SAMTools SNP 145691 145691 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1031 SAMTools SNP 153188 153188 14.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1031 SAMTools SNP 159265 159265 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C78%2C0%2C19%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.04%2C5.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1031 SAMTools SNP 159297 159297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C61%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1031 SAMTools SNP 159357 159357 80.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold1031 SAMTools SNP 159370 159370 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.00025%2C0.33%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C199:99 scaffold1031 SAMTools SNP 159389 159389 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C14%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.0011%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1031 SAMTools SNP 160256 160256 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1031 SAMTools SNP 160400 160400 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1031 SAMTools SNP 161136 161136 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C9.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C174:79 scaffold1031 SAMTools SNP 162176 162176 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C7%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.071%2C2.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1031 SAMTools SNP 162772 162772 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1031 SAMTools SNP 166622 166622 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1031 SAMTools SNP 167049 167049 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1031 SAMTools SNP 167663 167663 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold1031 SAMTools SNP 168064 168064 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold1031 SAMTools SNP 168137 168137 17.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.067%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C5:8 scaffold1031 SAMTools SNP 169527 169527 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C25%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C235%2C0:99 scaffold1031 SAMTools SNP 170001 170001 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1031 SAMTools SNP 203036 203036 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1031 SAMTools SNP 260249 260249 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 260252 260252 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 260710 260710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 279506 279506 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 279534 279534 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 351516 351516 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D914%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C309%2C73%2C456%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.7%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1031 SAMTools SNP 351596 351596 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.021%2C1.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C106:39 scaffold1031 SAMTools SNP 352010 352010 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D655%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C21%2C211%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D8.7e-11%2C2.8e-61%2C1%2C1.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1031 SAMTools SNP 352457 352457 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3323%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1078%2C49%2C1159%2C71%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.13%2C0%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1031 SAMTools SNP 352887 352887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1031 SAMTools SNP 352910 352910 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C380%2C91%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.19%2C5.4e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1031 SAMTools SNP 353258 353258 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1279%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D652%2C280%2C44%2C102%3BMQ%3D50%3BFQ%3D71%3BPV4%3D7.7e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1031 SAMTools SNP 353717 353717 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D701%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C130%2C201%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 354379 354379 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1896%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C10%2C517%2C1238%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.04%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1031 SAMTools SNP 356052 356052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1439%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1438%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1031 SAMTools SNP 368743 368743 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 368749 368749 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1031 SAMTools SNP 370614 370614 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C190:99 scaffold1031 SAMTools SNP 371612 371612 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 371650 371650 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 376920 376920 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C44%2C15%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold1031 SAMTools SNP 376930 376930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C15%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1031 SAMTools SNP 377749 377749 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1031 SAMTools SNP 381138 381138 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1031 SAMTools SNP 381188 381188 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1031 SAMTools SNP 383089 383089 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1031 SAMTools SNP 383110 383110 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C122:77 scaffold1031 SAMTools SNP 388342 388342 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1031 SAMTools SNP 388504 388504 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1031 SAMTools SNP 389893 389893 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 393216 393216 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 393225 393225 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 394185 394185 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1031 SAMTools SNP 394197 394197 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold1031 SAMTools SNP 394258 394258 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C54%2C0:99 scaffold1031 SAMTools SNP 394682 394682 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.45%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1031 SAMTools SNP 395528 395528 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold1031 SAMTools SNP 399478 399478 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C222:31 scaffold1031 SAMTools SNP 399564 399564 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1031 SAMTools SNP 399996 399996 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1031 SAMTools SNP 400025 400025 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1031 SAMTools SNP 400771 400771 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C155:99 scaffold1031 SAMTools SNP 400793 400793 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1031 SAMTools SNP 401191 401191 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1031 SAMTools SNP 401233 401233 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1031 SAMTools SNP 402474 402474 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 402480 402480 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 402834 402834 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1031 SAMTools SNP 402892 402892 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1031 SAMTools SNP 405132 405132 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1031 SAMTools SNP 405276 405276 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1031 SAMTools SNP 405603 405603 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1031 SAMTools SNP 405633 405633 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.22%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C146:99 scaffold1031 SAMTools SNP 405852 405852 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1031 SAMTools SNP 405868 405868 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1031 SAMTools SNP 406113 406113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 406421 406421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 406738 406738 67.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1031 SAMTools SNP 406928 406928 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C6.6e-18%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 407092 407092 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C48%2C0:93 scaffold1031 SAMTools SNP 407446 407446 164 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C18%2C0:33 scaffold1031 SAMTools SNP 409288 409288 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1031 SAMTools SNP 409924 409924 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1031 SAMTools SNP 409968 409968 17.1 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1031 SAMTools SNP 413075 413075 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1031 SAMTools SNP 413107 413107 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 413117 413117 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 413971 413971 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1031 SAMTools SNP 417302 417302 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 417987 417987 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.21%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 418424 418424 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold1031 SAMTools SNP 418445 418445 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C204:99 scaffold1031 SAMTools SNP 422444 422444 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1031 SAMTools SNP 422447 422447 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1031 SAMTools SNP 422660 422660 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1031 SAMTools SNP 422921 422921 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold1031 SAMTools SNP 422957 422957 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1031 SAMTools SNP 423479 423479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1031 SAMTools SNP 423512 423512 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.0077%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1031 SAMTools SNP 425955 425955 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1031 SAMTools SNP 426259 426259 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1031 SAMTools SNP 426280 426280 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1031 SAMTools SNP 426373 426373 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.62%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1031 SAMTools SNP 426741 426741 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1031 SAMTools SNP 426747 426747 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1031 SAMTools SNP 427392 427392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1031 SAMTools SNP 428207 428207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 428255 428255 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C22%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.65%2C0.076%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1031 SAMTools SNP 432636 432636 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C2%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 434109 434109 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold1031 SAMTools SNP 434123 434123 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold1031 SAMTools SNP 434151 434151 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1031 SAMTools SNP 434747 434747 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1031 SAMTools SNP 434753 434753 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold1031 SAMTools SNP 436945 436945 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1031 SAMTools SNP 438048 438048 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1031 SAMTools SNP 438297 438297 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1031 SAMTools SNP 439051 439051 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1031 SAMTools SNP 441332 441332 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1031 SAMTools SNP 441767 441767 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1031 SAMTools SNP 441814 441814 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1031 SAMTools SNP 441832 441832 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1031 SAMTools SNP 442409 442409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.014%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 442526 442526 9.08 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1031 SAMTools SNP 443765 443765 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1031 SAMTools SNP 443909 443909 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 444792 444792 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C40%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1031 SAMTools SNP 444974 444974 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C51%2C0:99 scaffold1031 SAMTools SNP 445238 445238 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1031 SAMTools SNP 447794 447794 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1031 SAMTools SNP 466942 466942 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 466977 466977 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 480573 480573 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1031 SAMTools SNP 480830 480830 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1031 SAMTools SNP 485435 485435 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1031 SAMTools SNP 494397 494397 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1031 SAMTools SNP 494401 494401 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1031 SAMTools SNP 498269 498269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 498302 498302 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1031 SAMTools SNP 498483 498483 15.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1031 SAMTools SNP 500987 500987 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C60%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 501017 501017 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C5%3BMQ%3D46%3BFQ%3D-33%3BPV4%3D1%2C1%2C0.34%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold1031 SAMTools SNP 501056 501056 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C3%2C15%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.72%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1031 SAMTools SNP 501068 501068 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C3%2C22%3BMQ%3D49%3BFQ%3D83%3BPV4%3D1%2C2.7e-24%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1031 SAMTools SNP 501098 501098 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C1%2C27%3BMQ%3D49%3BFQ%3D47%3BPV4%3D0.36%2C3.4e-39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1031 SAMTools SNP 501287 501287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.12%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 501478 501478 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0086%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1031 SAMTools SNP 505764 505764 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C27%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.062%2C0.13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1031 SAMTools SNP 506095 506095 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C26%2C13%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0009%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1031 SAMTools SNP 506098 506098 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C27%2C12%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.0008%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1031 SAMTools SNP 506448 506448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1031 SAMTools SNP 506475 506475 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 506542 506542 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.24%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 507900 507900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1031 SAMTools SNP 510873 510873 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.44%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1031 SAMTools SNP 510918 510918 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.59%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1031 SAMTools SNP 512066 512066 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.15%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C197:99 scaffold1031 SAMTools SNP 512093 512093 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.082%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1031 SAMTools SNP 512458 512458 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1031 SAMTools SNP 512479 512479 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.3%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1031 SAMTools SNP 512569 512569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 514318 514318 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C28%2C52%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 514781 514781 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C18%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.022%2C1.3e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1031 SAMTools SNP 515267 515267 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C4.3e-10%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C240:67 scaffold1031 SAMTools SNP 516009 516009 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.00032%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1031 SAMTools SNP 516208 516208 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.012%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1031 SAMTools SNP 516216 516216 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C0.069%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1031 SAMTools SNP 516296 516296 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C6%2C25%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.5%2C1.7e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1031 SAMTools SNP 516878 516878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1031 SAMTools SNP 516929 516929 170 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C178%2C0%2C191%2C148%2C188:99 scaffold1031 SAMTools SNP 517025 517025 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C47%2C52%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 517103 517103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C65%2C4%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.7e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 517178 517178 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1031 SAMTools SNP 517208 517208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1031 SAMTools SNP 519356 519356 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1031 SAMTools SNP 519396 519396 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1031 SAMTools SNP 519405 519405 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1031 SAMTools SNP 519480 519480 79.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold1031 SAMTools SNP 519543 519543 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1031 SAMTools SNP 519621 519621 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C146:99 scaffold1031 SAMTools SNP 519630 519630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1031 SAMTools SNP 519639 519639 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C224:99 scaffold1031 SAMTools SNP 519919 519919 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.57%2C1%2C1%2C6.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1031 SAMTools SNP 519925 519925 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold1031 SAMTools SNP 519955 519955 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1031 SAMTools SNP 520147 520147 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C36%2C0:69 scaffold1031 SAMTools SNP 520218 520218 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C201:56 scaffold1031 SAMTools SNP 520339 520339 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C17%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C253%2C0:99 scaffold1031 SAMTools SNP 520516 520516 26.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1031 SAMTools SNP 520609 520609 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C58%2C19%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.02%2C1.2e-13%2C0.44%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 521728 521728 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C14%2C11%3BMQ%3D46%3BFQ%3D193%3BPV4%3D0.41%2C0.00089%2C0.00014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1031 SAMTools SNP 521746 521746 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C9%2C3%3BMQ%3D43%3BFQ%3D108%3BPV4%3D0.63%2C1%2C8.6e-05%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1031 SAMTools SNP 521758 521758 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C4%2C0%3BMQ%3D44%3BFQ%3D61%3BPV4%3D0.01%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1031 SAMTools SNP 525054 525054 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D46%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C105%2C0:99 scaffold1031 SAMTools SNP 527555 527555 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 528596 528596 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 528625 528625 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1031 SAMTools SNP 534437 534437 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1031 SAMTools SNP 538309 538309 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1031 SAMTools SNP 539430 539430 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 540033 540033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 540945 540945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C46%2C24%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.26%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 541280 541280 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1031 SAMTools SNP 541481 541481 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1031 SAMTools SNP 541794 541794 18 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1031 SAMTools SNP 541876 541876 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1031 SAMTools SNP 541934 541934 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1031 SAMTools SNP 548806 548806 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C196:64 scaffold1031 SAMTools SNP 548823 548823 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.095%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1031 SAMTools SNP 549004 549004 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.009%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C231:52 scaffold1031 SAMTools SNP 549035 549035 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.2%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1031 SAMTools SNP 549400 549400 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C25%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.51%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1031 SAMTools SNP 549402 549402 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1031 SAMTools SNP 549963 549963 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1031 SAMTools SNP 550646 550646 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.045%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1031 SAMTools SNP 554085 554085 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1031 SAMTools SNP 570417 570417 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1031 SAMTools SNP 579168 579168 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1031 SAMTools SNP 579744 579744 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1031 SAMTools SNP 579770 579770 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1031 SAMTools SNP 579841 579841 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1031 SAMTools SNP 581342 581342 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 581752 581752 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 581949 581949 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1031 SAMTools SNP 588937 588937 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C57%2C0:99 scaffold1031 SAMTools SNP 589029 589029 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.15%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1031 SAMTools SNP 589242 589242 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1031 SAMTools SNP 591117 591117 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1031 SAMTools SNP 591267 591267 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1031 SAMTools SNP 603472 603472 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1032 SAMTools SNP 914 914 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 1922 1922 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 1994 1994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1032 SAMTools SNP 3832 3832 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1032 SAMTools SNP 4508 4508 37.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1032 SAMTools SNP 6000 6000 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C159:99 scaffold1032 SAMTools SNP 6018 6018 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C21%2C0:39 scaffold1032 SAMTools SNP 6042 6042 77.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1032 SAMTools SNP 12693 12693 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C69:54 scaffold1032 SAMTools SNP 12867 12867 33.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1032 SAMTools SNP 12971 12971 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1032 SAMTools SNP 13372 13372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 13496 13496 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1032 SAMTools SNP 27508 27508 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1032 SAMTools SNP 28223 28223 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1032 SAMTools SNP 28265 28265 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 28364 28364 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 50506 50506 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1032 SAMTools SNP 80790 80790 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 81211 81211 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1032 SAMTools SNP 81301 81301 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C248%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 81666 81666 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C247%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 81714 81714 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C27%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.48%2C1%2C1e-12;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C34%2C0:65 scaffold1032 SAMTools SNP 111145 111145 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C48%2C0:93 scaffold1032 SAMTools SNP 111919 111919 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D378%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C53%2C293%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D9.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 111955 111955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D738%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D219%2C7%2C163%2C232%3BMQ%3D44%3BFQ%3D198%3BPV4%3D3.4e-51%2C0.012%2C0.00022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1032 SAMTools SNP 111991 111991 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C7%2C201%2C77%3BMQ%3D39%3BFQ%3D225%3BPV4%3D2.3e-15%2C2.2e-25%2C1.8e-23%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 158562 158562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 158785 158785 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 158820 158820 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 158846 158846 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1032 SAMTools SNP 159099 159099 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1032 SAMTools SNP 159801 159801 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C4.8e-08%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C247:99 scaffold1032 SAMTools SNP 159824 159824 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.11%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C91:94 scaffold1032 SAMTools SNP 160382 160382 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1032 SAMTools SNP 161224 161224 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 161276 161276 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1032 SAMTools SNP 161306 161306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1032 SAMTools SNP 162219 162219 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1032 SAMTools SNP 162844 162844 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C182:74 scaffold1032 SAMTools SNP 162856 162856 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.44%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C254:40 scaffold1032 SAMTools SNP 163056 163056 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold1032 SAMTools SNP 166655 166655 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1032 SAMTools SNP 166806 166806 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.23%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C101:99 scaffold1032 SAMTools SNP 167275 167275 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1032 SAMTools SNP 167302 167302 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.2%2C3.2e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1032 SAMTools SNP 167311 167311 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1032 SAMTools SNP 169240 169240 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold1032 SAMTools SNP 169242 169242 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C119:99 scaffold1032 SAMTools SNP 170086 170086 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold1032 SAMTools SNP 170887 170887 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 170904 170904 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 172200 172200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1032 SAMTools SNP 172338 172338 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 172887 172887 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 172959 172959 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C52:55 scaffold1032 SAMTools SNP 173307 173307 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.42%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C26:29 scaffold1032 SAMTools SNP 173370 173370 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.036%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold1032 SAMTools SNP 173674 173674 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 177394 177394 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 177398 177398 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 178014 178014 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1032 SAMTools SNP 178278 178278 66.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1032 SAMTools SNP 178293 178293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 178760 178760 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1032 SAMTools SNP 178771 178771 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1032 SAMTools SNP 178778 178778 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1032 SAMTools SNP 178788 178788 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1032 SAMTools SNP 180366 180366 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1032 SAMTools SNP 180847 180847 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C5%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 180931 180931 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.69%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1032 SAMTools SNP 181389 181389 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 181695 181695 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1032 SAMTools SNP 182653 182653 52.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold1032 SAMTools SNP 186133 186133 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1032 SAMTools SNP 186674 186674 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1032 SAMTools SNP 187861 187861 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1032 SAMTools SNP 189971 189971 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1032 SAMTools SNP 190672 190672 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold1032 SAMTools SNP 190708 190708 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1032 SAMTools SNP 195640 195640 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1032 SAMTools SNP 198322 198322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 203482 203482 34.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1032 SAMTools SNP 207945 207945 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 208159 208159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1032 SAMTools SNP 208170 208170 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1032 SAMTools SNP 208389 208389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1032 SAMTools SNP 209617 209617 32.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1032 SAMTools SNP 225186 225186 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.47%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C241:99 scaffold1032 SAMTools SNP 225200 225200 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1032 SAMTools SNP 225245 225245 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 226747 226747 88 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold1032 SAMTools SNP 226789 226789 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1032 SAMTools SNP 230552 230552 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 230555 230555 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 231026 231026 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 231110 231110 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C35:38 scaffold1032 SAMTools SNP 231112 231112 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1032 SAMTools SNP 232800 232800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C24%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1032 SAMTools SNP 232841 232841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1032 SAMTools SNP 233413 233413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1032 SAMTools SNP 233428 233428 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1032 SAMTools SNP 233825 233825 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1032 SAMTools SNP 233870 233870 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 233912 233912 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 234482 234482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1032 SAMTools SNP 236641 236641 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1032 SAMTools SNP 236674 236674 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1032 SAMTools SNP 237248 237248 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1032 SAMTools SNP 237403 237403 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold1032 SAMTools SNP 238930 238930 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold1032 SAMTools SNP 238939 238939 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C18%2C0:33 scaffold1032 SAMTools SNP 238971 238971 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1032 SAMTools SNP 239200 239200 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold1032 SAMTools SNP 239203 239203 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1032 SAMTools SNP 239988 239988 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1032 SAMTools SNP 240291 240291 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.046%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1032 SAMTools SNP 240333 240333 67 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C86%2C77%2C100%2C0%2C94:16 scaffold1032 SAMTools SNP 240536 240536 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1032 SAMTools SNP 240623 240623 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1032 SAMTools SNP 241072 241072 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 241082 241082 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C5.9e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C241:85 scaffold1032 SAMTools SNP 246466 246466 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1032 SAMTools SNP 246953 246953 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1032 SAMTools SNP 247557 247557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5007%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D685%2C1215%2C609%2C2464%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-36%2C1.2e-05%2C0.29%2C7.6e-66;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 247674 247674 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1032 SAMTools SNP 247700 247700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4835%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C1125%2C3670%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 247757 247757 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4037%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D196%2C2490%2C4%2C683%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D2.7e-15%2C1%2C1%2C1.4e-49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1032 SAMTools SNP 247796 247796 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1679%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D219%2C674%2C212%2C500%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1.4e-193%2C1%2C2.4e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 247844 247844 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D802%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C484%2C307%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 248059 248059 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2140%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1672%2C409%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.2%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 248065 248065 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2168%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1032 SAMTools SNP 248158 248158 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2630%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C879%2C1729%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 255758 255758 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C123%2C0:99 scaffold1032 SAMTools SNP 255881 255881 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C776%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 257328 257328 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1184%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D236%2C6%2C95%2C29%3BMQ%3D50%3BFQ%3D100%3BPV4%3D4.9e-10%2C5.3e-144%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1032 SAMTools SNP 257331 257331 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1187%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D242%2C6%2C95%2C30%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1.3e-10%2C5.7e-136%2C1%2C1.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1032 SAMTools SNP 257346 257346 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C34%2C23%2C101%3BMQ%3D50%3BFQ%3D76%3BPV4%3D5.1e-33%2C1.1e-177%2C1%2C3.5e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1032 SAMTools SNP 257364 257364 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D633%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C106%2C86%2C136%3BMQ%3D50%3BFQ%3D139%3BPV4%3D3.9e-09%2C3.2e-229%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1032 SAMTools SNP 257616 257616 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D983%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-123%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C96%2C0:99 scaffold1032 SAMTools SNP 257661 257661 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0302%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.037%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C25:28 scaffold1032 SAMTools SNP 258255 258255 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C51%2C0:94 scaffold1032 SAMTools SNP 262553 262553 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C25%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 262574 262574 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C23%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1.8e-07%2C4.9e-17%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1032 SAMTools SNP 262981 262981 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.28%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1032 SAMTools SNP 263302 263302 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1032 SAMTools SNP 263314 263314 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1032 SAMTools SNP 264290 264290 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1032 SAMTools SNP 264701 264701 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1032 SAMTools SNP 266363 266363 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C185%2C2%2C122%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 266378 266378 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C219%2C2%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 266921 266921 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C1%2C13%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00035%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1032 SAMTools SNP 267140 267140 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C5%2C9%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.035%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1032 SAMTools SNP 267407 267407 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 267455 267455 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C5%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.48%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1032 SAMTools SNP 267521 267521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 269381 269381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C2%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1032 SAMTools SNP 269420 269420 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C0%2C28%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.49%2C1.6e-10%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1032 SAMTools SNP 276273 276273 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C57%2C0:99 scaffold1032 SAMTools SNP 278028 278028 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C256%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C255%2C0:99 scaffold1032 SAMTools SNP 279442 279442 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.33%2C0.12%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1032 SAMTools SNP 279899 279899 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C128%2C0%2C75%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D2e-09%2C4.2e-13%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1032 SAMTools SNP 280174 280174 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C110%2C22%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 281024 281024 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1032 SAMTools SNP 281580 281580 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1032 SAMTools SNP 287772 287772 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 290783 290783 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1032 SAMTools SNP 292343 292343 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1032 SAMTools SNP 292378 292378 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1032 SAMTools SNP 292817 292817 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 292835 292835 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold1032 SAMTools SNP 293510 293510 3.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1032 SAMTools SNP 294884 294884 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1032 SAMTools SNP 297756 297756 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 302622 302622 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1032 SAMTools SNP 307412 307412 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1032 SAMTools SNP 307587 307587 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.58%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1032 SAMTools SNP 315092 315092 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 316403 316403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 316510 316510 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1032 SAMTools SNP 316548 316548 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.47%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1032 SAMTools SNP 319750 319750 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1032 SAMTools SNP 319837 319837 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 319846 319846 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 321344 321344 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D31%3BFQ%3D40%3BPV4%3D1%2C1%2C0.47%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C67:70 scaffold1032 SAMTools SNP 325049 325049 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D37%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1032 SAMTools SNP 326511 326511 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C17%3BMQ%3D40%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1032 SAMTools SNP 326574 326574 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C12%3BMQ%3D49%3BFQ%3D180%3BPV4%3D0.047%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C230:99 scaffold1032 SAMTools SNP 335066 335066 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.14%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1032 SAMTools SNP 335097 335097 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1032 SAMTools SNP 336938 336938 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 336962 336962 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.14%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1032 SAMTools SNP 336968 336968 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.27%2C0.35%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1032 SAMTools SNP 350926 350926 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 350968 350968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 352769 352769 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 357691 357691 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1032 SAMTools SNP 358311 358311 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1032 SAMTools SNP 358368 358368 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 358380 358380 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1032 SAMTools SNP 360824 360824 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1032 SAMTools SNP 363582 363582 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C0%2C13%3BMQ%3D49%3BFQ%3D160%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1032 SAMTools SNP 363609 363609 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C0%2C12%3BMQ%3D49%3BFQ%3D152%3BPV4%3D0.0014%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1032 SAMTools SNP 363678 363678 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C37%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1.8e-05%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1032 SAMTools SNP 363828 363828 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C29:32 scaffold1032 SAMTools SNP 366389 366389 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1032 SAMTools SNP 366781 366781 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.27%2C1.8e-10%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1032 SAMTools SNP 367097 367097 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C69%2C0:99 scaffold1032 SAMTools SNP 367658 367658 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C123%2C0:99 scaffold1032 SAMTools SNP 367758 367758 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.56%2C9.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1032 SAMTools SNP 367826 367826 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.13%2C4.4e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1032 SAMTools SNP 368684 368684 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1032 SAMTools SNP 369904 369904 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C15%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.089%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold1032 SAMTools SNP 369947 369947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.051%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1032 SAMTools SNP 370576 370576 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1032 SAMTools SNP 370687 370687 4.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1032 SAMTools SNP 371095 371095 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 371451 371451 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 371508 371508 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1032 SAMTools SNP 371599 371599 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 372408 372408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C85%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 372468 372468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C70%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1032 SAMTools SNP 372618 372618 78.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1032 SAMTools SNP 372639 372639 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 372681 372681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1032 SAMTools SNP 374026 374026 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.31%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 374040 374040 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.22%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 375164 375164 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1032 SAMTools SNP 376420 376420 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.1%2C0.1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1032 SAMTools SNP 376462 376462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 379037 379037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 382648 382648 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C43%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1032 SAMTools SNP 382676 382676 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C16%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1032 SAMTools SNP 382689 382689 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C22%2C12%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1032 SAMTools SNP 384623 384623 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C1%2C9%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.32%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1032 SAMTools SNP 384643 384643 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C228:78 scaffold1032 SAMTools SNP 384698 384698 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1032 SAMTools SNP 384719 384719 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1032 SAMTools SNP 385042 385042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1032 SAMTools SNP 385048 385048 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1032 SAMTools SNP 388297 388297 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold1032 SAMTools SNP 388777 388777 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1032 SAMTools SNP 389191 389191 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1032 SAMTools SNP 390260 390260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C38%3BMQ%3D49%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1032 SAMTools SNP 396555 396555 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1032 SAMTools SNP 397224 397224 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold1032 SAMTools SNP 397470 397470 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C107:65 scaffold1032 SAMTools SNP 398232 398232 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.41%2C1.1e-09%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1032 SAMTools SNP 398772 398772 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C77:41 scaffold1032 SAMTools SNP 399153 399153 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.56%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1032 SAMTools SNP 399175 399175 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1032 SAMTools SNP 399212 399212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C29%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1032 SAMTools SNP 399724 399724 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1032 SAMTools SNP 400006 400006 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1032 SAMTools SNP 400912 400912 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1032 SAMTools SNP 401089 401089 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.7e-36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C236:58 scaffold1032 SAMTools SNP 401636 401636 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C34%2C86%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 402198 402198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C90%2C7%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-05%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 402576 402576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C73%2C27%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 402617 402617 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 403418 403418 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C62%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.23%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 403442 403442 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C62%2C14%2C7%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.031%2C0.18%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1032 SAMTools SNP 403493 403493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C8%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 403878 403878 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1032 SAMTools SNP 403939 403939 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 403993 403993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 404178 404178 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C15%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 404208 404208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C60%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1032 SAMTools SNP 404550 404550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1032 SAMTools SNP 405094 405094 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold1032 SAMTools SNP 405214 405214 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C54%2C0:80 scaffold1032 SAMTools SNP 406196 406196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C18%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 406208 406208 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C18%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.0074%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 406247 406247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 406307 406307 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C248:99 scaffold1032 SAMTools SNP 406328 406328 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C19%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.066%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C251:99 scaffold1032 SAMTools SNP 406517 406517 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.042%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C224:47 scaffold1032 SAMTools SNP 406538 406538 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1032 SAMTools SNP 406795 406795 47.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold1032 SAMTools SNP 407319 407319 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold1032 SAMTools SNP 407324 407324 64 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0%2C94%2C14%2C91:51 scaffold1032 SAMTools SNP 408209 408209 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C15%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.047%2C1.2e-41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1032 SAMTools SNP 409709 409709 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1032 SAMTools SNP 409860 409860 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 411264 411264 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C172:99 scaffold1032 SAMTools SNP 411269 411269 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C166:99 scaffold1032 SAMTools SNP 411869 411869 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.19%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1032 SAMTools SNP 411906 411906 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D40%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C245:28 scaffold1032 SAMTools SNP 411978 411978 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1032 SAMTools SNP 412526 412526 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1032 SAMTools SNP 413604 413604 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1032 SAMTools SNP 413628 413628 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 416565 416565 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C18%2C14%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.76%2C5.4e-11%2C1%2C1.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1032 SAMTools SNP 416571 416571 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C18%2C14%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1.1e-11%2C1%2C2.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1032 SAMTools SNP 417165 417165 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1032 SAMTools SNP 417816 417816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C57%2C9%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 417960 417960 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C24%2C0:45 scaffold1032 SAMTools SNP 418047 418047 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C2.5e-05%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C26:29 scaffold1032 SAMTools SNP 418605 418605 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C3%2C19%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.3%2C5.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1032 SAMTools SNP 418656 418656 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.69%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1032 SAMTools SNP 418662 418662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 420563 420563 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C8%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.053%2C2e-30%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1032 SAMTools SNP 420737 420737 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C36%2C104%2C17%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.00024%2C3e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1032 SAMTools SNP 421286 421286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C14%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 421304 421304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C11%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 421823 421823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C12%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 421838 421838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 421931 421931 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1032 SAMTools SNP 425552 425552 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C34%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1032 SAMTools SNP 430957 430957 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 439772 439772 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 440779 440779 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1032 SAMTools SNP 440796 440796 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1032 SAMTools SNP 445055 445055 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C72%2C0:99 scaffold1032 SAMTools SNP 446535 446535 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1032 SAMTools SNP 447311 447311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C7%2C47%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 447401 447401 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C52%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1032 SAMTools SNP 447458 447458 61.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C12%2C0:21 scaffold1032 SAMTools SNP 447559 447559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 448136 448136 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C91%2C0%2C32%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.013%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1032 SAMTools SNP 448146 448146 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0031%2C0.41%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1032 SAMTools SNP 448742 448742 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1032 SAMTools SNP 465915 465915 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1032 SAMTools SNP 465916 465916 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1032 SAMTools SNP 471134 471134 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C48%2C0:93 scaffold1032 SAMTools SNP 482450 482450 53.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1032 SAMTools SNP 483460 483460 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold1032 SAMTools SNP 500988 500988 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1032 SAMTools SNP 501049 501049 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1032 SAMTools SNP 502058 502058 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 502076 502076 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1032 SAMTools SNP 502357 502357 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 502373 502373 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.38%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold1032 SAMTools SNP 503940 503940 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 504054 504054 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C29:32 scaffold1032 SAMTools SNP 504366 504366 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 504859 504859 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 508907 508907 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1032 SAMTools SNP 510249 510249 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 517083 517083 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold1032 SAMTools SNP 517926 517926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C3%2C153%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.43%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 520178 520178 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1032 SAMTools SNP 520241 520241 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1032 SAMTools SNP 520250 520250 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 520269 520269 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 520723 520723 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 520738 520738 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 525565 525565 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 525967 525967 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1032 SAMTools SNP 526535 526535 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 529734 529734 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold1032 SAMTools SNP 531913 531913 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0049%2C0.0052%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C230:70 scaffold1032 SAMTools SNP 532791 532791 34.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D45%3BFQ%3D-40%3BPV4%3D1%2C5.2e-09%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C13%2C0:23 scaffold1032 SAMTools SNP 536442 536442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4391%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C356%2C4030%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 536454 536454 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4193%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C221%2C223%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 536481 536481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D751%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C525%2C222%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 543552 543552 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 545373 545373 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1032 SAMTools SNP 545603 545603 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 547201 547201 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D617%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C462%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 549889 549889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D664%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D225%2C87%2C257%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 550200 550200 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1032 SAMTools SNP 560021 560021 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D934%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D407%2C79%2C328%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 560619 560619 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C34%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.32%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C242:99 scaffold1032 SAMTools SNP 561390 561390 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D322%2C1%2C313%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 561693 561693 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1032 SAMTools SNP 570132 570132 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1032 SAMTools SNP 570140 570140 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.44%2C0.024%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1032 SAMTools SNP 570174 570174 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1032 SAMTools SNP 570189 570189 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1032 SAMTools SNP 570873 570873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C12%2C67%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.14%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 570894 570894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C13%2C84%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 572484 572484 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0005%2C1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1032 SAMTools SNP 572612 572612 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C24%2C85%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C9.9e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 573934 573934 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.73%2C4.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1032 SAMTools SNP 576168 576168 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1032 SAMTools SNP 576200 576200 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C70:34 scaffold1032 SAMTools SNP 591110 591110 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1032 SAMTools SNP 591970 591970 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 592069 592069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 597215 597215 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 598593 598593 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 617046 617046 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1032 SAMTools SNP 620703 620703 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C9%2C56%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 622035 622035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1032 SAMTools SNP 634891 634891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1032 SAMTools SNP 634944 634944 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C0%2C12%3BMQ%3D40%3BFQ%3D50%3BPV4%3D0.0016%2C2.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C240:80 scaffold1032 SAMTools SNP 638070 638070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1032 SAMTools SNP 638086 638086 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold1032 SAMTools SNP 638316 638316 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C7%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.18%2C1.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1032 SAMTools SNP 639817 639817 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.72%2C1.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1032 SAMTools SNP 644741 644741 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.42%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1032 SAMTools SNP 650242 650242 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C24:27 scaffold1032 SAMTools SNP 650252 650252 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C27:29 scaffold1032 SAMTools SNP 650425 650425 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C27:30 scaffold1032 SAMTools SNP 650923 650923 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1032 SAMTools SNP 650950 650950 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1032 SAMTools SNP 656192 656192 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1032 SAMTools SNP 656193 656193 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1032 SAMTools SNP 656495 656495 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 657468 657468 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1032 SAMTools SNP 662875 662875 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.012%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1032 SAMTools SNP 669406 669406 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1032 SAMTools SNP 670446 670446 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1032 SAMTools SNP 670500 670500 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1032 SAMTools SNP 671447 671447 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1032 SAMTools SNP 672448 672448 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0098%2C1.9e-21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1032 SAMTools SNP 678091 678091 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.18%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1032 SAMTools SNP 678422 678422 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C41%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1032 SAMTools SNP 678437 678437 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C65%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 681283 681283 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1032 SAMTools SNP 682188 682188 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C49%2C29%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.042%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 682191 682191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C50%2C25%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.012%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1032 SAMTools SNP 684350 684350 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1032 SAMTools SNP 684381 684381 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C32%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.34%2C3.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1032 SAMTools SNP 684527 684527 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1032 SAMTools SNP 684815 684815 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C3%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1032 SAMTools SNP 686731 686731 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1032 SAMTools SNP 688988 688988 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1032 SAMTools SNP 689046 689046 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1032 SAMTools SNP 696153 696153 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1032 SAMTools SNP 697641 697641 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C1.6e-05%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1032 SAMTools SNP 700376 700376 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C1%2C13%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1032 SAMTools SNP 700610 700610 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.11%2C6.7e-06%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1032 SAMTools SNP 700687 700687 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1033 SAMTools SNP 9066 9066 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 9259 9259 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 9276 9276 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 45114 45114 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1033 SAMTools SNP 45354 45354 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1033 SAMTools SNP 46713 46713 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold1033 SAMTools SNP 46731 46731 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.44%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1033 SAMTools SNP 46763 46763 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C253:99 scaffold1033 SAMTools SNP 47884 47884 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D67.9%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C110:98 scaffold1033 SAMTools SNP 48223 48223 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C12:15 scaffold1033 SAMTools SNP 48605 48605 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold1033 SAMTools SNP 49102 49102 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00012%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1033 SAMTools SNP 49127 49127 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 49264 49264 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.62%2C0.017%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1033 SAMTools SNP 49291 49291 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1033 SAMTools SNP 49539 49539 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1033 SAMTools SNP 49881 49881 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1033 SAMTools SNP 49917 49917 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1033 SAMTools SNP 50273 50273 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold1033 SAMTools SNP 50282 50282 99.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1033 SAMTools SNP 50676 50676 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1033 SAMTools SNP 50688 50688 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1033 SAMTools SNP 50724 50724 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C0.42%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold1033 SAMTools SNP 51172 51172 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1033 SAMTools SNP 51332 51332 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1033 SAMTools SNP 51791 51791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1033 SAMTools SNP 53028 53028 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 53097 53097 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 77289 77289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1033 SAMTools SNP 106917 106917 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1033 SAMTools SNP 132402 132402 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1033 SAMTools SNP 140027 140027 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.45%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C166:68 scaffold1033 SAMTools SNP 140043 140043 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1033 SAMTools SNP 146445 146445 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C202:99 scaffold1033 SAMTools SNP 146448 146448 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1033 SAMTools SNP 146803 146803 64.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold1033 SAMTools SNP 146934 146934 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C33%2C0:63 scaffold1033 SAMTools SNP 146997 146997 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C10%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C126%2C0:99 scaffold1033 SAMTools SNP 147022 147022 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C117%2C0:99 scaffold1033 SAMTools SNP 147180 147180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1033 SAMTools SNP 147261 147261 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C149:99 scaffold1033 SAMTools SNP 147579 147579 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold1033 SAMTools SNP 147835 147835 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1033 SAMTools SNP 154567 154567 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1033 SAMTools SNP 155353 155353 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C42%2C0:81 scaffold1033 SAMTools SNP 155359 155359 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1033 SAMTools SNP 156483 156483 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.38%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1033 SAMTools SNP 156501 156501 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1033 SAMTools SNP 156580 156580 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1033 SAMTools SNP 157906 157906 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1033 SAMTools SNP 160016 160016 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C11%2C5%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C9.6e-25%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1033 SAMTools SNP 160212 160212 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C26%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1033 SAMTools SNP 162403 162403 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1033 SAMTools SNP 163694 163694 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1033 SAMTools SNP 163703 163703 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1033 SAMTools SNP 164801 164801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1033 SAMTools SNP 164948 164948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1033 SAMTools SNP 165479 165479 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.21%2C0.073%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1033 SAMTools SNP 165873 165873 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold1033 SAMTools SNP 165891 165891 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1033 SAMTools SNP 166270 166270 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C5%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1033 SAMTools SNP 166576 166576 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1033 SAMTools SNP 166594 166594 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C29%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.15%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1033 SAMTools SNP 166600 166600 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C39%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1033 SAMTools SNP 168131 168131 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C38%2C1%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0021%2C0.16%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1035 SAMTools SNP 5611 5611 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1035 SAMTools SNP 43444 43444 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1035 SAMTools SNP 44684 44684 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C0:5 scaffold1035 SAMTools SNP 45445 45445 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1035 SAMTools SNP 101962 101962 92.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1035 SAMTools SNP 104706 104706 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1035 SAMTools SNP 149545 149545 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1035 SAMTools SNP 162141 162141 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1035 SAMTools SNP 162152 162152 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1035 SAMTools SNP 162162 162162 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1035 SAMTools SNP 168486 168486 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1035 SAMTools SNP 172805 172805 12.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1035 SAMTools SNP 198936 198936 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1035 SAMTools SNP 200250 200250 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1035 SAMTools SNP 200456 200456 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1036 SAMTools SNP 86616 86616 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1036 SAMTools SNP 86628 86628 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1036 SAMTools SNP 86631 86631 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1036 SAMTools SNP 86773 86773 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 86796 86796 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 126237 126237 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C1%2C1%2C4.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1036 SAMTools SNP 126271 126271 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C23%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0093%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1036 SAMTools SNP 126861 126861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C137%2C9%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-06%2C0.02%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 126870 126870 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C159%2C1%2C89%3BMQ%3D50%3BFQ%3D127%3BPV4%3D4.7e-13%2C0.014%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1036 SAMTools SNP 132343 132343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C3%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C0.033%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 259301 259301 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1036 SAMTools SNP 267112 267112 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1036 SAMTools SNP 267130 267130 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 268106 268106 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1036 SAMTools SNP 275358 275358 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1036 SAMTools SNP 275393 275393 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1036 SAMTools SNP 275394 275394 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1036 SAMTools SNP 275435 275435 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1036 SAMTools SNP 275919 275919 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1036 SAMTools SNP 275925 275925 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 282745 282745 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D46%3BFQ%3D30%3BPV4%3D0.46%2C0.0015%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C140:60 scaffold1036 SAMTools SNP 316691 316691 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1036 SAMTools SNP 316825 316825 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 316842 316842 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1036 SAMTools SNP 334813 334813 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1036 SAMTools SNP 334839 334839 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1036 SAMTools SNP 335717 335717 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1036 SAMTools SNP 335751 335751 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1036 SAMTools SNP 335794 335794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C11%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D0.15%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold1036 SAMTools SNP 337210 337210 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold1036 SAMTools SNP 338142 338142 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1036 SAMTools SNP 347233 347233 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-4.81%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C24:28 scaffold1036 SAMTools SNP 361174 361174 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1036 SAMTools SNP 363226 363226 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1036 SAMTools SNP 364977 364977 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D45%3BFQ%3D33%3BPV4%3D1%2C0.046%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C184:63 scaffold1036 SAMTools SNP 365593 365593 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C9%3BMQ%3D46%3BFQ%3D119%3BPV4%3D0.077%2C0.46%2C0.17%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C146:99 scaffold1036 SAMTools SNP 365621 365621 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1036 SAMTools SNP 366760 366760 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1036 SAMTools SNP 366763 366763 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1036 SAMTools SNP 366796 366796 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1036 SAMTools SNP 370872 370872 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D49%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1036 SAMTools SNP 370893 370893 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D45%3BFQ%3D51.8%3BPV4%3D1%2C0.0034%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C85:82 scaffold1036 SAMTools SNP 400885 400885 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-9.51%3BPV4%3D1%2C2.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C18:21 scaffold1036 SAMTools SNP 408415 408415 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold1036 SAMTools SNP 408766 408766 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.2e-05%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C226:55 scaffold1036 SAMTools SNP 450109 450109 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1036 SAMTools SNP 454585 454585 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1036 SAMTools SNP 454639 454639 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1036 SAMTools SNP 455038 455038 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C77:80 scaffold1036 SAMTools SNP 455056 455056 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1036 SAMTools SNP 455168 455168 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1036 SAMTools SNP 455194 455194 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1036 SAMTools SNP 456134 456134 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1036 SAMTools SNP 456287 456287 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.07%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1036 SAMTools SNP 462870 462870 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.43%2C4.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1036 SAMTools SNP 462896 462896 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.62%2C1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1036 SAMTools SNP 462966 462966 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.35%2C1.1e-18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C197:99 scaffold1036 SAMTools SNP 467002 467002 29.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold1036 SAMTools SNP 467308 467308 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1036 SAMTools SNP 467320 467320 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C166:68 scaffold1036 SAMTools SNP 467796 467796 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1036 SAMTools SNP 467839 467839 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1036 SAMTools SNP 469073 469073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1036 SAMTools SNP 473261 473261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C181%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 473264 473264 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C45%2C59%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.00065%2C1%2C1%2C3.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1036 SAMTools SNP 473276 473276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 473345 473345 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C78%2C10%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 473808 473808 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C46%2C0%2C18%3BMQ%3D50%3BFQ%3D36%3BPV4%3D3.5e-06%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1036 SAMTools SNP 473877 473877 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1036 SAMTools SNP 473898 473898 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C46%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1036 SAMTools SNP 473910 473910 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C65%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1036 SAMTools SNP 474956 474956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C63%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1036 SAMTools SNP 475088 475088 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.00038%2C0.0071%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1036 SAMTools SNP 475106 475106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 475607 475607 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C49%2C54%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-11%2C0.31%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 475640 475640 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1036 SAMTools SNP 475646 475646 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1036 SAMTools SNP 475658 475658 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C51%2C0:99 scaffold1036 SAMTools SNP 475697 475697 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C50%2C41%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D2.4e-14%2C1%2C1%2C1.4e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1036 SAMTools SNP 476333 476333 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C10%2C65%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 476354 476354 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C26%2C30%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 476459 476459 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C53%2C108%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 476480 476480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C92%2C114%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1036 SAMTools SNP 477362 477362 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D585%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C308%2C261%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 477386 477386 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1036 SAMTools SNP 478375 478375 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C293%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 478414 478414 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1036 SAMTools SNP 503833 503833 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1036 SAMTools SNP 505121 505121 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1036 SAMTools SNP 510931 510931 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1036 SAMTools SNP 511800 511800 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1036 SAMTools SNP 519873 519873 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1036 SAMTools SNP 525309 525309 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1036 SAMTools SNP 525628 525628 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1036 SAMTools SNP 525792 525792 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1036 SAMTools SNP 526921 526921 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.032%2C0.00071%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1036 SAMTools SNP 527281 527281 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1036 SAMTools SNP 527310 527310 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C0.029%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C38:41 scaffold1036 SAMTools SNP 534254 534254 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1036 SAMTools SNP 583320 583320 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1036 SAMTools SNP 583400 583400 48.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1036 SAMTools SNP 585002 585002 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold1036 SAMTools SNP 585163 585163 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C9.4e-09%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C102:60 scaffold1036 SAMTools SNP 585527 585527 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.46%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C195:49 scaffold1036 SAMTools SNP 586254 586254 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1036 SAMTools SNP 586580 586580 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C7.7e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C82:51 scaffold1037 SAMTools SNP 21144 21144 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 22568 22568 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1037 SAMTools SNP 22906 22906 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1037 SAMTools SNP 22909 22909 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 23103 23103 31.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1037 SAMTools SNP 31890 31890 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 31938 31938 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1037 SAMTools SNP 32942 32942 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 32952 32952 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 33188 33188 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 34391 34391 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C225:88 scaffold1037 SAMTools SNP 36524 36524 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1037 SAMTools SNP 36556 36556 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 38308 38308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 40121 40121 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 40131 40131 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 41458 41458 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 54411 54411 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C7%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C241%2C0:99 scaffold1037 SAMTools SNP 54710 54710 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.26%2C0.0041%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1037 SAMTools SNP 54869 54869 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.38%2C0.083%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1037 SAMTools SNP 61831 61831 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1037 SAMTools SNP 83924 83924 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C21%2C72%2C42%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.42%2C4.2e-168%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1037 SAMTools SNP 84404 84404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1037 SAMTools SNP 102959 102959 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C335%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 103567 103567 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 103798 103798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C20%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 125764 125764 144 . . REF=N;ALT=T,G,C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C132%2C0%2C145%2C70%2C139%2C156%2C81%2C117%2C150:99 scaffold1037 SAMTools SNP 125820 125820 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C0%2C110%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C3.5e-222%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1037 SAMTools SNP 156947 156947 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C6%2C10%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.74%2C3.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1037 SAMTools SNP 159056 159056 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C13%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 159233 159233 4.77 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1037 SAMTools SNP 159789 159789 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D202%2C68%2C84%2C54%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0043%2C1.1e-179%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1037 SAMTools SNP 159990 159990 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 160269 160269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D690%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C306%2C330%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.48%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 167377 167377 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00043%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1037 SAMTools SNP 169856 169856 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1037 SAMTools SNP 170440 170440 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 171993 171993 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1037 SAMTools SNP 172059 172059 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 172121 172121 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold1037 SAMTools SNP 172193 172193 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1037 SAMTools SNP 172418 172418 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1037 SAMTools SNP 172464 172464 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 174692 174692 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1037 SAMTools SNP 175151 175151 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C39%2C0:75 scaffold1037 SAMTools SNP 175635 175635 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C148%2C0:99 scaffold1037 SAMTools SNP 176054 176054 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C9.3e-17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C247:99 scaffold1037 SAMTools SNP 176135 176135 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C13%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1037 SAMTools SNP 181810 181810 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 181861 181861 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D5.28%3BPV4%3D1%2C1%2C0.21%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold1037 SAMTools SNP 181864 181864 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C0.21%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1037 SAMTools SNP 183266 183266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C49%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 184460 184460 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C84%2C135%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 184646 184646 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D313%2C65%2C345%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 185574 185574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1073%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D451%2C131%2C385%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 186515 186515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D779%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C321%2C89%2C255%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.93%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 186563 186563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C70%2C61%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 187195 187195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D785%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C662%2C123%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 188995 188995 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1037 SAMTools SNP 192036 192036 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C19%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C251:99 scaffold1037 SAMTools SNP 192485 192485 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 194003 194003 38.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1037 SAMTools SNP 195261 195261 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1037 SAMTools SNP 197414 197414 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1037 SAMTools SNP 198131 198131 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1037 SAMTools SNP 198161 198161 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1037 SAMTools SNP 198218 198218 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1037 SAMTools SNP 198971 198971 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C8%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1037 SAMTools SNP 199007 199007 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1037 SAMTools SNP 199208 199208 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0019%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1037 SAMTools SNP 203472 203472 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C42%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1037 SAMTools SNP 204145 204145 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C29%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1037 SAMTools SNP 204496 204496 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C14%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.016%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 204556 204556 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 204589 204589 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C33%2C0%2C39%3BMQ%3D50%3BFQ%3D185%3BPV4%3D2.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1037 SAMTools SNP 206643 206643 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C0%2C17%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.16%2C0.49%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1037 SAMTools SNP 207780 207780 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.37%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1037 SAMTools SNP 208492 208492 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 208574 208574 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1037 SAMTools SNP 208846 208846 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C14%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C249:99 scaffold1037 SAMTools SNP 208887 208887 88 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold1037 SAMTools SNP 213303 213303 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1037 SAMTools SNP 214089 214089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1037 SAMTools SNP 214161 214161 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1037 SAMTools SNP 216836 216836 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1037 SAMTools SNP 220400 220400 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold1037 SAMTools SNP 220454 220454 158 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C14%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C208%2C0%2C177%2C176%2C174:99 scaffold1037 SAMTools SNP 220607 220607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C12%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1037 SAMTools SNP 220791 220791 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.5%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C236:63 scaffold1037 SAMTools SNP 221102 221102 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.079%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 221108 221108 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C43%2C6%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C4.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1037 SAMTools SNP 221166 221166 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C111%2C4%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1037 SAMTools SNP 221620 221620 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C81%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1037 SAMTools SNP 221698 221698 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.15%2C1.3e-15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1037 SAMTools SNP 223890 223890 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C36%2C0:69 scaffold1037 SAMTools SNP 223914 223914 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1037 SAMTools SNP 229874 229874 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D28.6%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C66:59 scaffold1037 SAMTools SNP 229946 229946 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.15%2C0.01%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C211:30 scaffold1037 SAMTools SNP 231432 231432 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C19%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.32%2C2.6e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1037 SAMTools SNP 233255 233255 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold1037 SAMTools SNP 233356 233356 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C39%2C0:75 scaffold1037 SAMTools SNP 233535 233535 34.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1037 SAMTools SNP 234549 234549 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.44%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C156:33 scaffold1037 SAMTools SNP 235518 235518 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1037 SAMTools SNP 237365 237365 4.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5039%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-9.62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C18:23 scaffold1037 SAMTools SNP 238815 238815 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1037 SAMTools SNP 238890 238890 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C225:54 scaffold1037 SAMTools SNP 245142 245142 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold1037 SAMTools SNP 246679 246679 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1037 SAMTools SNP 246724 246724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1037 SAMTools SNP 247144 247144 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 254513 254513 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1037 SAMTools SNP 256560 256560 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.045%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1037 SAMTools SNP 257097 257097 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.029%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold1037 SAMTools SNP 257317 257317 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 266990 266990 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 267595 267595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1037 SAMTools SNP 267613 267613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1037 SAMTools SNP 267634 267634 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C0.5%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1037 SAMTools SNP 269470 269470 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C4.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C232:99 scaffold1037 SAMTools SNP 270550 270550 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1037 SAMTools SNP 270592 270592 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold1037 SAMTools SNP 282435 282435 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C23:26 scaffold1037 SAMTools SNP 284060 284060 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold1037 SAMTools SNP 288225 288225 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1037 SAMTools SNP 292998 292998 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C158:96 scaffold1037 SAMTools SNP 293362 293362 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C1%2C11%3BMQ%3D49%3BFQ%3D176%3BPV4%3D0.65%2C0.11%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1037 SAMTools SNP 293372 293372 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 293373 293373 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 296580 296580 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1037 SAMTools SNP 296607 296607 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1037 SAMTools SNP 296645 296645 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 297519 297519 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1037 SAMTools SNP 297528 297528 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1037 SAMTools SNP 299075 299075 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 303352 303352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1037 SAMTools SNP 312600 312600 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1037 SAMTools SNP 313966 313966 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D32%3BFQ%3D6.83%3BPV4%3D0.4%2C0.0072%2C0.39%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C39:34 scaffold1037 SAMTools SNP 314019 314019 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D45%3BFQ%3D-9.5%3BPV4%3D0.4%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C18:21 scaffold1037 SAMTools SNP 320594 320594 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C54%2C0:99 scaffold1037 SAMTools SNP 320692 320692 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C84%2C0:99 scaffold1037 SAMTools SNP 320861 320861 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1037 SAMTools SNP 323412 323412 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1037 SAMTools SNP 323442 323442 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C2%3BMQ%3D48%3BFQ%3D35%3BPV4%3D0.24%2C0.27%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold1037 SAMTools SNP 324808 324808 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.00021%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C39:42 scaffold1037 SAMTools SNP 325073 325073 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold1037 SAMTools SNP 325077 325077 43.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1037 SAMTools SNP 326934 326934 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C26:29 scaffold1037 SAMTools SNP 327178 327178 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D40%3BFQ%3D45%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C72:75 scaffold1037 SAMTools SNP 328204 328204 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D48%3BFQ%3D117%3BPV4%3D1%2C0.19%2C0.17%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C171:99 scaffold1037 SAMTools SNP 346830 346830 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1037 SAMTools SNP 347060 347060 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 347097 347097 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1037 SAMTools SNP 347102 347102 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1037 SAMTools SNP 347114 347114 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1037 SAMTools SNP 347223 347223 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1037 SAMTools SNP 347252 347252 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1037 SAMTools SNP 353009 353009 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1037 SAMTools SNP 353774 353774 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1037 SAMTools SNP 353792 353792 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1037 SAMTools SNP 356607 356607 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1037 SAMTools SNP 356889 356889 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1037 SAMTools SNP 356961 356961 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C165:99 scaffold1037 SAMTools SNP 358071 358071 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1037 SAMTools SNP 360571 360571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 360592 360592 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 360637 360637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1037 SAMTools SNP 361729 361729 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 361738 361738 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C238:99 scaffold1037 SAMTools SNP 361777 361777 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C234:99 scaffold1037 SAMTools SNP 361792 361792 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C250:99 scaffold1037 SAMTools SNP 362231 362231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1037 SAMTools SNP 362688 362688 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C15%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1037 SAMTools SNP 363012 363012 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C209:69 scaffold1037 SAMTools SNP 363516 363516 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 363520 363520 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 363547 363547 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1037 SAMTools SNP 363798 363798 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1037 SAMTools SNP 363799 363799 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1037 SAMTools SNP 364635 364635 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 364667 364667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 366025 366025 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1037 SAMTools SNP 366088 366088 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1037 SAMTools SNP 366139 366139 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C18%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1037 SAMTools SNP 366786 366786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 367289 367289 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C2e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C222:65 scaffold1037 SAMTools SNP 367310 367310 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1037 SAMTools SNP 367817 367817 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1037 SAMTools SNP 367856 367856 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 368220 368220 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C18%2C0:33 scaffold1037 SAMTools SNP 368268 368268 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1037 SAMTools SNP 368970 368970 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1037 SAMTools SNP 369435 369435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 369746 369746 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1037 SAMTools SNP 370350 370350 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold1037 SAMTools SNP 370368 370368 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1037 SAMTools SNP 370394 370394 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1037 SAMTools SNP 370457 370457 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1037 SAMTools SNP 371296 371296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1037 SAMTools SNP 371323 371323 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C1%2C0:4 scaffold1037 SAMTools SNP 371761 371761 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold1037 SAMTools SNP 373181 373181 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 373199 373199 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1037 SAMTools SNP 384547 384547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1037 SAMTools SNP 384633 384633 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C13%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1037 SAMTools SNP 391542 391542 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1037 SAMTools SNP 391543 391543 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 391556 391556 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 391566 391566 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 391567 391567 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1037 SAMTools SNP 391593 391593 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1037 SAMTools SNP 391620 391620 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1037 SAMTools SNP 392167 392167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 392212 392212 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1037 SAMTools SNP 392332 392332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1037 SAMTools SNP 392507 392507 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C78%2C31%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 394181 394181 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D45%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1037 SAMTools SNP 404563 404563 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1037 SAMTools SNP 404695 404695 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C12:15 scaffold1037 SAMTools SNP 407820 407820 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1037 SAMTools SNP 407821 407821 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1037 SAMTools SNP 408353 408353 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 411262 411262 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 411284 411284 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 411326 411326 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 411469 411469 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 413682 413682 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1037 SAMTools SNP 413723 413723 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.07%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C198:60 scaffold1037 SAMTools SNP 413727 413727 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.085%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1037 SAMTools SNP 413733 413733 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold1037 SAMTools SNP 413958 413958 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1037 SAMTools SNP 414319 414319 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C6:9 scaffold1037 SAMTools SNP 424923 424923 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1037 SAMTools SNP 425006 425006 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1037 SAMTools SNP 426580 426580 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 429760 429760 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold1037 SAMTools SNP 429794 429794 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1037 SAMTools SNP 430500 430500 61.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C12%2C0:21 scaffold1037 SAMTools SNP 443221 443221 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1037 SAMTools SNP 443229 443229 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1037 SAMTools SNP 444205 444205 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C10%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1.7e-15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1037 SAMTools SNP 444751 444751 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0085%2C2.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1037 SAMTools SNP 444982 444982 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C40%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1037 SAMTools SNP 445909 445909 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C18%2C18%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.81%2C6.6e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1037 SAMTools SNP 446136 446136 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 447477 447477 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C12%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C9.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1037 SAMTools SNP 447509 447509 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C23%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.3%2C4.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C223:73 scaffold1037 SAMTools SNP 449557 449557 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C247:54 scaffold1037 SAMTools SNP 470264 470264 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 470297 470297 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 474256 474256 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 475434 475434 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 475601 475601 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1037 SAMTools SNP 475674 475674 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1037 SAMTools SNP 475763 475763 20.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1037 SAMTools SNP 476080 476080 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1037 SAMTools SNP 476353 476353 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1037 SAMTools SNP 477073 477073 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.14%2C0.001%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C156:31 scaffold1037 SAMTools SNP 479947 479947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1037 SAMTools SNP 479989 479989 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1037 SAMTools SNP 480322 480322 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1037 SAMTools SNP 480820 480820 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C210:99 scaffold1037 SAMTools SNP 481041 481041 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.17%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1037 SAMTools SNP 481059 481059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C15%2C5%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.64%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1037 SAMTools SNP 482455 482455 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 482685 482685 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1037 SAMTools SNP 483084 483084 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C6%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1037 SAMTools SNP 483153 483153 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C34%2C0%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1037 SAMTools SNP 483572 483572 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1037 SAMTools SNP 484013 484013 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.011%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C190:99 scaffold1037 SAMTools SNP 484345 484345 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1037 SAMTools SNP 501797 501797 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1037 SAMTools SNP 501800 501800 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1037 SAMTools SNP 501842 501842 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1037 SAMTools SNP 502021 502021 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1037 SAMTools SNP 502030 502030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1037 SAMTools SNP 502054 502054 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1037 SAMTools SNP 502240 502240 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.15%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1037 SAMTools SNP 502340 502340 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1037 SAMTools SNP 502533 502533 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1037 SAMTools SNP 502564 502564 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1037 SAMTools SNP 503704 503704 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1037 SAMTools SNP 503743 503743 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1037 SAMTools SNP 504097 504097 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1037 SAMTools SNP 504130 504130 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1037 SAMTools SNP 504207 504207 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 504228 504228 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold1037 SAMTools SNP 504263 504263 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1037 SAMTools SNP 505291 505291 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1037 SAMTools SNP 505455 505455 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1041 SAMTools SNP 59310 59310 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 59687 59687 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1041 SAMTools SNP 59764 59764 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 63011 63011 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C0:4 scaffold1041 SAMTools SNP 118925 118925 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C57%2C0:99 scaffold1041 SAMTools SNP 119032 119032 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1041 SAMTools SNP 119825 119825 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1041 SAMTools SNP 120158 120158 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1041 SAMTools SNP 120163 120163 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1041 SAMTools SNP 192299 192299 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 192322 192322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 193550 193550 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold1041 SAMTools SNP 193602 193602 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1041 SAMTools SNP 193877 193877 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C162:33 scaffold1041 SAMTools SNP 194314 194314 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1041 SAMTools SNP 197391 197391 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1041 SAMTools SNP 197433 197433 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1041 SAMTools SNP 197971 197971 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1041 SAMTools SNP 198532 198532 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C38:41 scaffold1041 SAMTools SNP 199483 199483 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1041 SAMTools SNP 199939 199939 43.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold1041 SAMTools SNP 224881 224881 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C61%2C131%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1041 SAMTools SNP 226659 226659 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1041 SAMTools SNP 226683 226683 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1041 SAMTools SNP 226713 226713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1041 SAMTools SNP 226743 226743 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C10:57 scaffold1041 SAMTools SNP 228707 228707 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D676%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C0.0012%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C67%2C0:99 scaffold1041 SAMTools SNP 229077 229077 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1041 SAMTools SNP 230082 230082 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 230109 230109 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 230139 230139 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C1%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.41%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1041 SAMTools SNP 230480 230480 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1041 SAMTools SNP 230525 230525 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C15%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1041 SAMTools SNP 230602 230602 38.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C35%2C17%2C62%2C0%2C59:33 scaffold1041 SAMTools SNP 230654 230654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C3%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-10%2C1%2C1%2C8e-40;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 230657 230657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C64%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1041 SAMTools SNP 233191 233191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C24%2C22%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 233476 233476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1041 SAMTools SNP 233479 233479 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C4%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1041 SAMTools SNP 233509 233509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 233668 233668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C19%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1041 SAMTools SNP 233716 233716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 234062 234062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C52%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1041 SAMTools SNP 234125 234125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C261%2C18%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1041 SAMTools SNP 238018 238018 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1041 SAMTools SNP 238451 238451 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 240553 240553 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C18%2C114%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 244969 244969 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C30%2C20%2C32%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.14%2C2.3e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1041 SAMTools SNP 268889 268889 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1041 SAMTools SNP 268903 268903 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1041 SAMTools SNP 271183 271183 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C1%2C12%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C242:99 scaffold1041 SAMTools SNP 271360 271360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C31%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold1041 SAMTools SNP 271382 271382 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold1041 SAMTools SNP 271388 271388 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1041 SAMTools SNP 272417 272417 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1041 SAMTools SNP 272432 272432 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1041 SAMTools SNP 273219 273219 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 273241 273241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 273256 273256 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 273480 273480 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1041 SAMTools SNP 273790 273790 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1041 SAMTools SNP 274320 274320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1041 SAMTools SNP 276356 276356 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1041 SAMTools SNP 276892 276892 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1041 SAMTools SNP 276899 276899 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 276938 276938 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.16%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1041 SAMTools SNP 280751 280751 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.52%2C0.0037%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1041 SAMTools SNP 280763 280763 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1041 SAMTools SNP 280805 280805 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0153%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C189:34 scaffold1041 SAMTools SNP 282527 282527 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1041 SAMTools SNP 282780 282780 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1041 SAMTools SNP 284541 284541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1041 SAMTools SNP 284663 284663 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold1041 SAMTools SNP 285270 285270 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C158:68 scaffold1041 SAMTools SNP 285340 285340 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1041 SAMTools SNP 287500 287500 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1041 SAMTools SNP 289489 289489 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 289531 289531 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1041 SAMTools SNP 290167 290167 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.046%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold1041 SAMTools SNP 291128 291128 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold1041 SAMTools SNP 291650 291650 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 294896 294896 21.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1041 SAMTools SNP 294935 294935 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C194:99 scaffold1041 SAMTools SNP 295908 295908 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 295941 295941 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.53%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1041 SAMTools SNP 296025 296025 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C6%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.027%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1041 SAMTools SNP 296079 296079 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C9%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D0.34%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold1041 SAMTools SNP 296713 296713 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C7%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.32%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1041 SAMTools SNP 302128 302128 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C42%2C0:77 scaffold1041 SAMTools SNP 303945 303945 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1041 SAMTools SNP 306127 306127 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C72%2C7%3BMQ%3D50%3BFQ%3D-35%3BPV4%3D6.4e-07%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C8%2C0:14 scaffold1041 SAMTools SNP 306163 306163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1041 SAMTools SNP 306193 306193 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C76%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1041 SAMTools SNP 307771 307771 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C62%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1041 SAMTools SNP 312835 312835 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1041 SAMTools SNP 313279 313279 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.2%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1041 SAMTools SNP 313414 313414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1041 SAMTools SNP 313420 313420 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 314280 314280 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C0%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1041 SAMTools SNP 314286 314286 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C0%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1041 SAMTools SNP 314316 314316 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1041 SAMTools SNP 314334 314334 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1041 SAMTools SNP 314718 314718 17.1 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C18%2C47%2C0%2C44:6 scaffold1041 SAMTools SNP 315607 315607 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 315614 315614 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1041 SAMTools SNP 316054 316054 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1041 SAMTools SNP 316193 316193 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1041 SAMTools SNP 318365 318365 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 318903 318903 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1041 SAMTools SNP 318935 318935 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 318947 318947 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 325844 325844 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 325870 325870 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1041 SAMTools SNP 327132 327132 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1041 SAMTools SNP 327222 327222 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1041 SAMTools SNP 337414 337414 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1041 SAMTools SNP 337784 337784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1041 SAMTools SNP 338168 338168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 338680 338680 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C17%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0044%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1041 SAMTools SNP 339262 339262 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1041 SAMTools SNP 339334 339334 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1041 SAMTools SNP 339483 339483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1041 SAMTools SNP 339498 339498 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1041 SAMTools SNP 340070 340070 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1041 SAMTools SNP 340079 340079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1041 SAMTools SNP 340135 340135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1041 SAMTools SNP 340609 340609 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1041 SAMTools SNP 341006 341006 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.12%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1041 SAMTools SNP 342701 342701 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1041 SAMTools SNP 342729 342729 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1041 SAMTools SNP 342945 342945 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C42%2C0:81 scaffold1041 SAMTools SNP 343350 343350 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.022%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C60:44 scaffold1041 SAMTools SNP 344320 344320 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1041 SAMTools SNP 345289 345289 82.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold1041 SAMTools SNP 346037 346037 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1041 SAMTools SNP 346065 346065 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold1041 SAMTools SNP 346764 346764 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.44%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C191:99 scaffold1041 SAMTools SNP 347058 347058 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.24%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1041 SAMTools SNP 348055 348055 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1041 SAMTools SNP 348061 348061 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1041 SAMTools SNP 348925 348925 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1041 SAMTools SNP 349706 349706 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold1041 SAMTools SNP 350895 350895 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1041 SAMTools SNP 351110 351110 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1041 SAMTools SNP 352515 352515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1041 SAMTools SNP 354273 354273 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C249:99 scaffold1041 SAMTools SNP 363935 363935 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1041 SAMTools SNP 369460 369460 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1041 SAMTools SNP 370629 370629 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1045 SAMTools SNP 4115 4115 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1045 SAMTools SNP 4207 4207 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1045 SAMTools SNP 65245 65245 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C15%2C0:27 scaffold1045 SAMTools SNP 65569 65569 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold1045 SAMTools SNP 66567 66567 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold1045 SAMTools SNP 72485 72485 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1045 SAMTools SNP 73438 73438 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C46%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C212:99 scaffold1045 SAMTools SNP 73906 73906 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1045 SAMTools SNP 74231 74231 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.4%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1045 SAMTools SNP 74297 74297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1045 SAMTools SNP 75329 75329 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1045 SAMTools SNP 75347 75347 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1045 SAMTools SNP 75948 75948 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1045 SAMTools SNP 76266 76266 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1045 SAMTools SNP 76296 76296 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.14%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C169:60 scaffold1045 SAMTools SNP 76314 76314 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C95:98 scaffold1045 SAMTools SNP 76345 76345 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1045 SAMTools SNP 78727 78727 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1045 SAMTools SNP 78843 78843 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1045 SAMTools SNP 78846 78846 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.081%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C202:99 scaffold1045 SAMTools SNP 80828 80828 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0058%2C0.35%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1045 SAMTools SNP 80853 80853 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C29%2C2%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.047%2C0.22%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1045 SAMTools SNP 81329 81329 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1045 SAMTools SNP 81484 81484 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C33%2C30%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.05%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold1045 SAMTools SNP 82087 82087 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0048%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.007%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C210:64 scaffold1045 SAMTools SNP 86740 86740 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1045 SAMTools SNP 88834 88834 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1045 SAMTools SNP 106100 106100 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1045 SAMTools SNP 106190 106190 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold105 SAMTools SNP 1893 1893 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 1897 1897 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold105 SAMTools SNP 2332 2332 7.8 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C11%2C8%2C37%2C0%2C34:4 scaffold105 SAMTools SNP 2567 2567 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold105 SAMTools SNP 3040 3040 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 6538 6538 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C44%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold105 SAMTools SNP 12842 12842 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold105 SAMTools SNP 13079 13079 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold105 SAMTools SNP 13109 13109 21.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold105 SAMTools SNP 13172 13172 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C45%2C0:86 scaffold105 SAMTools SNP 13985 13985 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold105 SAMTools SNP 14096 14096 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold105 SAMTools SNP 14329 14329 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold105 SAMTools SNP 15128 15128 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C33%2C0:63 scaffold105 SAMTools SNP 15292 15292 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold105 SAMTools SNP 15630 15630 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold105 SAMTools SNP 16067 16067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold105 SAMTools SNP 17419 17419 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold105 SAMTools SNP 17519 17519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold105 SAMTools SNP 18541 18541 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold105 SAMTools SNP 20843 20843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold105 SAMTools SNP 21224 21224 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold105 SAMTools SNP 22555 22555 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold105 SAMTools SNP 24439 24439 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0:39 scaffold105 SAMTools SNP 24723 24723 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold105 SAMTools SNP 24767 24767 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold105 SAMTools SNP 27820 27820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 28385 28385 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 28424 28424 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold105 SAMTools SNP 29684 29684 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C33%2C0:63 scaffold105 SAMTools SNP 29792 29792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold105 SAMTools SNP 32338 32338 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.059%2C0.0022%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold105 SAMTools SNP 37546 37546 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.014%2C0.0085%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold105 SAMTools SNP 37662 37662 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold105 SAMTools SNP 38668 38668 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold105 SAMTools SNP 39978 39978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold105 SAMTools SNP 40226 40226 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold105 SAMTools SNP 40300 40300 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold105 SAMTools SNP 40937 40937 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold105 SAMTools SNP 40940 40940 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold105 SAMTools SNP 41063 41063 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 46485 46485 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C3%3BMQ%3D50%3BFQ%3D-133%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C106%2C0:99 scaffold105 SAMTools SNP 46563 46563 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C76%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold105 SAMTools SNP 46752 46752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C17%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold105 SAMTools SNP 49527 49527 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.00097%2C4.9e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold105 SAMTools SNP 50255 50255 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.51%2C4.4e-06%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold105 SAMTools SNP 50380 50380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold105 SAMTools SNP 50643 50643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C17%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold105 SAMTools SNP 51330 51330 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold105 SAMTools SNP 51516 51516 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold105 SAMTools SNP 51782 51782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold105 SAMTools SNP 51814 51814 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold105 SAMTools SNP 52115 52115 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold105 SAMTools SNP 52238 52238 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold105 SAMTools SNP 52622 52622 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 52643 52643 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold105 SAMTools SNP 53227 53227 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold105 SAMTools SNP 53257 53257 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold105 SAMTools SNP 53864 53864 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold105 SAMTools SNP 54079 54079 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold105 SAMTools SNP 54627 54627 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold105 SAMTools SNP 54825 54825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold105 SAMTools SNP 55384 55384 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 56094 56094 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold105 SAMTools SNP 56169 56169 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold105 SAMTools SNP 56211 56211 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold105 SAMTools SNP 56598 56598 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 57120 57120 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold105 SAMTools SNP 57537 57537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C6%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold105 SAMTools SNP 57561 57561 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold105 SAMTools SNP 57675 57675 30.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold105 SAMTools SNP 67286 67286 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold105 SAMTools SNP 67505 67505 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold105 SAMTools SNP 72815 72815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold105 SAMTools SNP 72830 72830 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold105 SAMTools SNP 73242 73242 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold105 SAMTools SNP 73257 73257 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C36%2C0:69 scaffold105 SAMTools SNP 74179 74179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold105 SAMTools SNP 74215 74215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold105 SAMTools SNP 74715 74715 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold105 SAMTools SNP 74803 74803 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold105 SAMTools SNP 74827 74827 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold105 SAMTools SNP 75111 75111 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold105 SAMTools SNP 80970 80970 13.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold105 SAMTools SNP 81307 81307 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold105 SAMTools SNP 82347 82347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold105 SAMTools SNP 82356 82356 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold105 SAMTools SNP 82673 82673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold105 SAMTools SNP 82717 82717 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold105 SAMTools SNP 82759 82759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold105 SAMTools SNP 82966 82966 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold105 SAMTools SNP 83717 83717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold105 SAMTools SNP 84101 84101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold105 SAMTools SNP 84107 84107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold105 SAMTools SNP 84747 84747 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold105 SAMTools SNP 85274 85274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C74%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold105 SAMTools SNP 86882 86882 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold105 SAMTools SNP 89890 89890 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 89894 89894 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.012%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C203:61 scaffold105 SAMTools SNP 90110 90110 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold105 SAMTools SNP 92347 92347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold105 SAMTools SNP 92534 92534 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C29:32 scaffold105 SAMTools SNP 92536 92536 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold105 SAMTools SNP 92559 92559 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D50.2%3BPV4%3D0.4%2C0.023%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C85:80 scaffold105 SAMTools SNP 92567 92567 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold105 SAMTools SNP 93680 93680 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C8%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold105 SAMTools SNP 93712 93712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C27%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold105 SAMTools SNP 94562 94562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold105 SAMTools SNP 95034 95034 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C41%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold105 SAMTools SNP 96026 96026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold105 SAMTools SNP 96538 96538 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold105 SAMTools SNP 96548 96548 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C8%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold105 SAMTools SNP 100266 100266 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C12%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold105 SAMTools SNP 102531 102531 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold105 SAMTools SNP 102543 102543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold105 SAMTools SNP 103057 103057 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.57%2C0.4%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold105 SAMTools SNP 104667 104667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C80%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold105 SAMTools SNP 104709 104709 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold105 SAMTools SNP 105148 105148 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 111475 111475 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold105 SAMTools SNP 111486 111486 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold105 SAMTools SNP 118555 118555 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold105 SAMTools SNP 118610 118610 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C63%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C196%2C0:99 scaffold105 SAMTools SNP 119069 119069 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C23%2C20%2C47%2C0%2C44:6 scaffold105 SAMTools SNP 119195 119195 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold105 SAMTools SNP 119452 119452 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C51%2C0:99 scaffold105 SAMTools SNP 119555 119555 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C57%2C0:99 scaffold105 SAMTools SNP 119666 119666 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C4%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C117%2C0:99 scaffold105 SAMTools SNP 119756 119756 9.53 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C23%2C20%2C39%2C0%2C36:5 scaffold105 SAMTools SNP 120089 120089 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold105 SAMTools SNP 127432 127432 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold105 SAMTools SNP 127993 127993 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold105 SAMTools SNP 128913 128913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold105 SAMTools SNP 129446 129446 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold105 SAMTools SNP 129464 129464 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C28%2C2%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D0.097%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold105 SAMTools SNP 129761 129761 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold105 SAMTools SNP 131342 131342 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold105 SAMTools SNP 133901 133901 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold105 SAMTools SNP 133911 133911 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold105 SAMTools SNP 133914 133914 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold105 SAMTools SNP 135718 135718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D626%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C137%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold105 SAMTools SNP 139872 139872 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 139884 139884 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 141043 141043 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold105 SAMTools SNP 143831 143831 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C13%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D7.4e-07%2C4.4e-10%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold105 SAMTools SNP 143894 143894 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold105 SAMTools SNP 145425 145425 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold105 SAMTools SNP 149487 149487 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C175%2C0:99 scaffold105 SAMTools SNP 151044 151044 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold105 SAMTools SNP 152256 152256 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C45%2C0:87 scaffold105 SAMTools SNP 152356 152356 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C0.02%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C207:46 scaffold105 SAMTools SNP 152361 152361 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C231:31 scaffold105 SAMTools SNP 152669 152669 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold105 SAMTools SNP 152678 152678 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold105 SAMTools SNP 154306 154306 70.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold105 SAMTools SNP 154883 154883 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C71%3BMQ%3D46%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold105 SAMTools SNP 154978 154978 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold105 SAMTools SNP 156534 156534 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C6%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold105 SAMTools SNP 157116 157116 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C146:36 scaffold105 SAMTools SNP 157164 157164 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold105 SAMTools SNP 158218 158218 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C0%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.012%2C8.1e-07%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold105 SAMTools SNP 159841 159841 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.03%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold105 SAMTools SNP 161624 161624 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C51%2C0:78 scaffold105 SAMTools SNP 162003 162003 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C24%2C0:44 scaffold105 SAMTools SNP 162369 162369 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C4%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C214%2C0:99 scaffold105 SAMTools SNP 167960 167960 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 167981 167981 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 173304 173304 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C36%2C0:68 scaffold105 SAMTools SNP 173528 173528 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.054%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C38:41 scaffold105 SAMTools SNP 173685 173685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C63%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold105 SAMTools SNP 174500 174500 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C109%2C41%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.5e-31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C255%2C0:99 scaffold105 SAMTools SNP 174599 174599 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold105 SAMTools SNP 211940 211940 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold105 SAMTools SNP 211972 211972 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold105 SAMTools SNP 227763 227763 22 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C12%2C51%2C0%2C48:15 scaffold105 SAMTools SNP 229210 229210 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold105 SAMTools SNP 230997 230997 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold105 SAMTools SNP 231251 231251 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold105 SAMTools SNP 232734 232734 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold105 SAMTools SNP 232758 232758 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold105 SAMTools SNP 242843 242843 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.046%2C0.43%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold105 SAMTools SNP 244598 244598 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold105 SAMTools SNP 268986 268986 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold105 SAMTools SNP 271568 271568 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold105 SAMTools SNP 277951 277951 50.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold105 SAMTools SNP 309327 309327 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C90%2C0:99 scaffold105 SAMTools SNP 316975 316975 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold105 SAMTools SNP 317001 317001 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold105 SAMTools SNP 321935 321935 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold105 SAMTools SNP 323592 323592 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold105 SAMTools SNP 323784 323784 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold105 SAMTools SNP 324365 324365 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold105 SAMTools SNP 324372 324372 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.43%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold105 SAMTools SNP 324499 324499 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold105 SAMTools SNP 360332 360332 37.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold105 SAMTools SNP 400740 400740 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold105 SAMTools SNP 405867 405867 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold105 SAMTools SNP 440029 440029 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold105 SAMTools SNP 440781 440781 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold105 SAMTools SNP 441430 441430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 1540 1540 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1050 SAMTools SNP 2743 2743 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 3809 3809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C62%2C8%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 3810 3810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C41%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 3875 3875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1050 SAMTools SNP 3877 3877 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1050 SAMTools SNP 4667 4667 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 4679 4679 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C74%2C9%3BMQ%3D50%3BFQ%3D-168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1050 SAMTools SNP 4940 4940 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1050 SAMTools SNP 5848 5848 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C243%2C2%2C88%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.034%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1050 SAMTools SNP 5869 5869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C294%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 6559 6559 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C172%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 13036 13036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 13066 13066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 13471 13471 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D617%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C154%2C305%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-54%2C1%2C1%2C5.9e-132;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 14083 14083 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5873%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1013%2C76%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 14128 14128 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3782%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D787%2C1100%2C210%2C467%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-07%2C1%2C1%2C5.6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 16294 16294 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1050 SAMTools SNP 16400 16400 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3537%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C561%2C1727%2C483%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-130%2C8e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 20262 20262 47.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1050 SAMTools SNP 28224 28224 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1050 SAMTools SNP 28717 28717 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 28871 28871 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.087%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1050 SAMTools SNP 32167 32167 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1050 SAMTools SNP 32170 32170 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1050 SAMTools SNP 32212 32212 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1050 SAMTools SNP 32936 32936 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1050 SAMTools SNP 32937 32937 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1050 SAMTools SNP 34169 34169 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1050 SAMTools SNP 54031 54031 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C4%3BMQ%3D39%3BFQ%3D131%3BPV4%3D0.33%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C158:99 scaffold1050 SAMTools SNP 54793 54793 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C3%3BMQ%3D35%3BFQ%3D67%3BPV4%3D0.63%2C0.29%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C168:97 scaffold1050 SAMTools SNP 57214 57214 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C0.27%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C32:35 scaffold1050 SAMTools SNP 57223 57223 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold1050 SAMTools SNP 57301 57301 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold1050 SAMTools SNP 57908 57908 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.49%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C66:69 scaffold1050 SAMTools SNP 58309 58309 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C22%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1.7e-07%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C163:99 scaffold1050 SAMTools SNP 58330 58330 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D2.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C227:71 scaffold1050 SAMTools SNP 58372 58372 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1050 SAMTools SNP 58877 58877 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 58886 58886 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1050 SAMTools SNP 58913 58913 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1050 SAMTools SNP 59200 59200 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1050 SAMTools SNP 59777 59777 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 59786 59786 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 59912 59912 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 59933 59933 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 61050 61050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1050 SAMTools SNP 61205 61205 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold1050 SAMTools SNP 61280 61280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.11%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 63090 63090 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1050 SAMTools SNP 63826 63826 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1050 SAMTools SNP 63835 63835 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1050 SAMTools SNP 65281 65281 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C88:40 scaffold1050 SAMTools SNP 65301 65301 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1050 SAMTools SNP 65751 65751 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1050 SAMTools SNP 65775 65775 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold1050 SAMTools SNP 65787 65787 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold1050 SAMTools SNP 66136 66136 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 66154 66154 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 66291 66291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 66693 66693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1050 SAMTools SNP 66717 66717 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C1%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.66%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1050 SAMTools SNP 66732 66732 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 66759 66759 40 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C245%2C182%2C255%2C0%2C242:99 scaffold1050 SAMTools SNP 67312 67312 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1050 SAMTools SNP 71881 71881 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1050 SAMTools SNP 71910 71910 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1050 SAMTools SNP 74957 74957 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1050 SAMTools SNP 75091 75091 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1050 SAMTools SNP 75542 75542 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1050 SAMTools SNP 75557 75557 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1050 SAMTools SNP 76589 76589 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold1050 SAMTools SNP 76607 76607 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C51%2C0:99 scaffold1050 SAMTools SNP 76685 76685 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.43%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C136:93 scaffold1050 SAMTools SNP 77732 77732 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1050 SAMTools SNP 77750 77750 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 77816 77816 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1050 SAMTools SNP 78278 78278 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C113:74 scaffold1050 SAMTools SNP 78745 78745 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1050 SAMTools SNP 80096 80096 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1050 SAMTools SNP 81092 81092 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 83732 83732 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1050 SAMTools SNP 83831 83831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1050 SAMTools SNP 84148 84148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1050 SAMTools SNP 84191 84191 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0075%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1050 SAMTools SNP 84218 84218 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold1050 SAMTools SNP 84239 84239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0008%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1050 SAMTools SNP 84263 84263 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0024%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1050 SAMTools SNP 84430 84430 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1050 SAMTools SNP 84451 84451 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1050 SAMTools SNP 84806 84806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1050 SAMTools SNP 84872 84872 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.49%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C155:83 scaffold1050 SAMTools SNP 84929 84929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1050 SAMTools SNP 84932 84932 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1050 SAMTools SNP 85284 85284 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1050 SAMTools SNP 85296 85296 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 85730 85730 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D43%3BFQ%3D53%3BPV4%3D1%2C0.19%2C0.18%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C171:83 scaffold1050 SAMTools SNP 85760 85760 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D45%3BFQ%3D64%3BPV4%3D0.093%2C1%2C0.081%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1050 SAMTools SNP 85784 85784 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C6%3BMQ%3D46%3BFQ%3D188%3BPV4%3D1%2C0.29%2C0.25%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1050 SAMTools SNP 86219 86219 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1050 SAMTools SNP 90732 90732 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1050 SAMTools SNP 92309 92309 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1050 SAMTools SNP 92312 92312 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1050 SAMTools SNP 92359 92359 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 93637 93637 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1050 SAMTools SNP 93646 93646 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold1050 SAMTools SNP 94922 94922 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1050 SAMTools SNP 94959 94959 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1050 SAMTools SNP 95064 95064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C5%2C18%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.38%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1050 SAMTools SNP 95103 95103 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold1050 SAMTools SNP 95530 95530 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1050 SAMTools SNP 95736 95736 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 95767 95767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 96655 96655 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1050 SAMTools SNP 96673 96673 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1050 SAMTools SNP 97241 97241 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 98720 98720 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1050 SAMTools SNP 98774 98774 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 98914 98914 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1050 SAMTools SNP 99094 99094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1050 SAMTools SNP 99132 99132 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1050 SAMTools SNP 99144 99144 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-79;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C99:99 scaffold1050 SAMTools SNP 99506 99506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C16%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1050 SAMTools SNP 99533 99533 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.51%2C0.029%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1050 SAMTools SNP 99551 99551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1050 SAMTools SNP 100183 100183 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 101231 101231 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 101563 101563 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1050 SAMTools SNP 101614 101614 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1050 SAMTools SNP 101779 101779 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.48%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1050 SAMTools SNP 101827 101827 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 104327 104327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1050 SAMTools SNP 104343 104343 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C4e-06%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1050 SAMTools SNP 104576 104576 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.63%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1050 SAMTools SNP 104789 104789 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1050 SAMTools SNP 104823 104823 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C224:99 scaffold1050 SAMTools SNP 104849 104849 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1050 SAMTools SNP 105025 105025 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1050 SAMTools SNP 120956 120956 15.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C5%2C0:8 scaffold1050 SAMTools SNP 132324 132324 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1050 SAMTools SNP 132734 132734 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1050 SAMTools SNP 133102 133102 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1050 SAMTools SNP 133544 133544 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1050 SAMTools SNP 133608 133608 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1050 SAMTools SNP 134139 134139 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1050 SAMTools SNP 134172 134172 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1050 SAMTools SNP 134500 134500 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1050 SAMTools SNP 134533 134533 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1050 SAMTools SNP 134971 134971 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold1050 SAMTools SNP 135049 135049 85.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1050 SAMTools SNP 135275 135275 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1050 SAMTools SNP 135289 135289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1050 SAMTools SNP 136098 136098 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C27%2C0:51 scaffold1050 SAMTools SNP 136555 136555 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1050 SAMTools SNP 137416 137416 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1050 SAMTools SNP 138369 138369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C45%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1050 SAMTools SNP 138378 138378 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C40%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1050 SAMTools SNP 138405 138405 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C17%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C202%2C0:99 scaffold1050 SAMTools SNP 138500 138500 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.2%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1050 SAMTools SNP 141315 141315 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold1050 SAMTools SNP 141918 141918 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1050 SAMTools SNP 142352 142352 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.02%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C119:99 scaffold1050 SAMTools SNP 143037 143037 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 143098 143098 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1050 SAMTools SNP 143127 143127 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C91:39 scaffold1050 SAMTools SNP 143663 143663 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1050 SAMTools SNP 143759 143759 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1050 SAMTools SNP 143774 143774 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1050 SAMTools SNP 143789 143789 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1050 SAMTools SNP 148051 148051 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1050 SAMTools SNP 148504 148504 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1050 SAMTools SNP 148552 148552 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1050 SAMTools SNP 150450 150450 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D42%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C39%2C0:75 scaffold1050 SAMTools SNP 150474 150474 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D42%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C39%2C0:75 scaffold1050 SAMTools SNP 150545 150545 42.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1050 SAMTools SNP 150565 150565 4.45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C12%2C0:11 scaffold1050 SAMTools SNP 156426 156426 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold1050 SAMTools SNP 160632 160632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1050 SAMTools SNP 160886 160886 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161267 161267 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161450 161450 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161465 161465 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C22%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-05%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161498 161498 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161701 161701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1050 SAMTools SNP 161725 161725 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1050 SAMTools SNP 161752 161752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1050 SAMTools SNP 162423 162423 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1050 SAMTools SNP 162456 162456 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1050 SAMTools SNP 162841 162841 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1050 SAMTools SNP 173991 173991 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1050 SAMTools SNP 175781 175781 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1050 SAMTools SNP 175800 175800 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 185529 185529 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C152%2C12%2C38%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.72%2C1%2C1%2C7.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1050 SAMTools SNP 185754 185754 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C213%2C84%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.39%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 186314 186314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1050 SAMTools SNP 191959 191959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C75%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1050 SAMTools SNP 192139 192139 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1050 SAMTools SNP 192266 192266 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D0.043%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C19%2C0:33 scaffold1050 SAMTools SNP 192333 192333 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold1050 SAMTools SNP 192368 192368 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C80:83 scaffold1050 SAMTools SNP 192626 192626 181 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold1050 SAMTools SNP 192694 192694 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C90%2C71%2C11%3BMQ%3D50%3BFQ%3D37%3BPV4%3D9.4e-15%2C3.5e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1050 SAMTools SNP 199868 199868 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 200201 200201 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 201089 201089 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 201425 201425 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 201689 201689 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1050 SAMTools SNP 202091 202091 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1050 SAMTools SNP 202121 202121 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1050 SAMTools SNP 202273 202273 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 202335 202335 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 206572 206572 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 210496 210496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1050 SAMTools SNP 211126 211126 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.24%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C245:99 scaffold1050 SAMTools SNP 214034 214034 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1050 SAMTools SNP 214050 214050 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1050 SAMTools SNP 215074 215074 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C3.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1050 SAMTools SNP 215782 215782 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1050 SAMTools SNP 216216 216216 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C112:99 scaffold1050 SAMTools SNP 216973 216973 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C24%2C0:45 scaffold1050 SAMTools SNP 217093 217093 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1050 SAMTools SNP 217883 217883 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1050 SAMTools SNP 218441 218441 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.14%2C8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C182:36 scaffold1050 SAMTools SNP 219865 219865 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1050 SAMTools SNP 222540 222540 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1052 SAMTools SNP 4098 4098 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1052 SAMTools SNP 4100 4100 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.13%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1052 SAMTools SNP 4558 4558 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C25%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1052 SAMTools SNP 4618 4618 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.025%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 6484 6484 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 6523 6523 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 7864 7864 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1052 SAMTools SNP 8739 8739 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1052 SAMTools SNP 8768 8768 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 8779 8779 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.04%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1052 SAMTools SNP 9262 9262 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1.1e-09%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 9295 9295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 9862 9862 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C43%2C25%2C50%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.49%2C0.49%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 10922 10922 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 11252 11252 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C9%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D2.3e-06%2C4.4e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1052 SAMTools SNP 12720 12720 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1052 SAMTools SNP 16073 16073 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold1052 SAMTools SNP 16545 16545 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 17176 17176 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1052 SAMTools SNP 17984 17984 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1052 SAMTools SNP 18464 18464 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1052 SAMTools SNP 18515 18515 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1052 SAMTools SNP 18605 18605 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.26%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1052 SAMTools SNP 21349 21349 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1052 SAMTools SNP 26036 26036 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1052 SAMTools SNP 27055 27055 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1052 SAMTools SNP 28269 28269 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1052 SAMTools SNP 28333 28333 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1052 SAMTools SNP 28354 28354 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1052 SAMTools SNP 30317 30317 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1052 SAMTools SNP 30334 30334 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1052 SAMTools SNP 32916 32916 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C10%2C17%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 39463 39463 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 39688 39688 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C12%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1052 SAMTools SNP 39766 39766 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.012%2C0.29%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1052 SAMTools SNP 39808 39808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1052 SAMTools SNP 41130 41130 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1052 SAMTools SNP 41926 41926 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.14%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1052 SAMTools SNP 41948 41948 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1052 SAMTools SNP 42745 42745 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1052 SAMTools SNP 43247 43247 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 43289 43289 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1052 SAMTools SNP 43298 43298 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1052 SAMTools SNP 43997 43997 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1052 SAMTools SNP 44167 44167 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1052 SAMTools SNP 44181 44181 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1052 SAMTools SNP 45057 45057 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1052 SAMTools SNP 47399 47399 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 47715 47715 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1052 SAMTools SNP 48740 48740 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.086%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1052 SAMTools SNP 51385 51385 37 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0%2C63%2C8%2C60:45 scaffold1052 SAMTools SNP 51700 51700 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D470%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C225%2C146%2C91%3BMQ%3D50%3BFQ%3D202%3BPV4%3D6.1e-50%2C1.5e-322%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1052 SAMTools SNP 51770 51770 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1052 SAMTools SNP 52220 52220 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1052 SAMTools SNP 52237 52237 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1434%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D340%2C610%2C95%2C299%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 52857 52857 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold1052 SAMTools SNP 52982 52982 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D745%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C180%2C79%2C356%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.26%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1052 SAMTools SNP 53070 53070 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D704%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C90%2C0:99 scaffold1052 SAMTools SNP 53549 53549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1002%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C432%2C100%2C286%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C2.3e-129%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 54273 54273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C119%2C77%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1052 SAMTools SNP 54880 54880 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C67%2C65%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.095%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 55169 55169 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C78%2C40%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 55198 55198 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1052 SAMTools SNP 55270 55270 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C48%2C20%2C14%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.11%2C3.9e-90%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1052 SAMTools SNP 55340 55340 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1052 SAMTools SNP 56363 56363 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1052 SAMTools SNP 56903 56903 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C14%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.039%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 56965 56965 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.54%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1052 SAMTools SNP 57239 57239 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C78%2C0:99 scaffold1052 SAMTools SNP 59956 59956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C2%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.078%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 59965 59965 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C68%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1052 SAMTools SNP 61314 61314 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C12%2C89%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 63191 63191 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C68%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1052 SAMTools SNP 65485 65485 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C44%2C8%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.21%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1052 SAMTools SNP 65519 65519 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C100%2C0%2C37%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0013%2C0.46%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1052 SAMTools SNP 65534 65534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1052 SAMTools SNP 74635 74635 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1052 SAMTools SNP 83070 83070 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 83394 83394 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00015%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1052 SAMTools SNP 84281 84281 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C40%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1052 SAMTools SNP 84329 84329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1052 SAMTools SNP 103434 103434 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1052 SAMTools SNP 107780 107780 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.25%2C0.0052%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1052 SAMTools SNP 107785 107785 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.12%2C0.0046%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1052 SAMTools SNP 108221 108221 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C27%2C0:51 scaffold1052 SAMTools SNP 108287 108287 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1052 SAMTools SNP 108449 108449 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1052 SAMTools SNP 108461 108461 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1052 SAMTools SNP 108532 108532 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1052 SAMTools SNP 108757 108757 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1052 SAMTools SNP 108760 108760 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1052 SAMTools SNP 109101 109101 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1052 SAMTools SNP 109206 109206 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1052 SAMTools SNP 110242 110242 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1052 SAMTools SNP 110276 110276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1052 SAMTools SNP 110336 110336 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1052 SAMTools SNP 112221 112221 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 112736 112736 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 112748 112748 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1052 SAMTools SNP 112947 112947 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1052 SAMTools SNP 113298 113298 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1053 SAMTools SNP 2852 2852 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 3007 3007 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 39285 39285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1053 SAMTools SNP 39312 39312 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1053 SAMTools SNP 39342 39342 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1053 SAMTools SNP 39383 39383 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1053 SAMTools SNP 40524 40524 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1053 SAMTools SNP 40977 40977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1053 SAMTools SNP 41814 41814 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 43962 43962 75.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold1053 SAMTools SNP 44010 44010 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00094%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C88:43 scaffold1053 SAMTools SNP 44881 44881 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 46875 46875 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1053 SAMTools SNP 46881 46881 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1053 SAMTools SNP 47702 47702 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1053 SAMTools SNP 47756 47756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1053 SAMTools SNP 48586 48586 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1053 SAMTools SNP 48593 48593 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1053 SAMTools SNP 50024 50024 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C21%2C0:39 scaffold1053 SAMTools SNP 50048 50048 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold1053 SAMTools SNP 51183 51183 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C33%2C0:63 scaffold1053 SAMTools SNP 54122 54122 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1053 SAMTools SNP 58668 58668 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1053 SAMTools SNP 58775 58775 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1053 SAMTools SNP 59895 59895 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1053 SAMTools SNP 59898 59898 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1053 SAMTools SNP 60182 60182 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.39%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1053 SAMTools SNP 60226 60226 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1053 SAMTools SNP 60612 60612 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 60613 60613 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold1053 SAMTools SNP 60647 60647 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.18%2C5e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C172:99 scaffold1053 SAMTools SNP 61661 61661 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.11%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C183:99 scaffold1053 SAMTools SNP 61695 61695 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1053 SAMTools SNP 61769 61769 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1053 SAMTools SNP 61780 61780 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1053 SAMTools SNP 62119 62119 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1053 SAMTools SNP 62374 62374 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1053 SAMTools SNP 63602 63602 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1053 SAMTools SNP 63662 63662 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1053 SAMTools SNP 63671 63671 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1053 SAMTools SNP 64021 64021 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C30%2C0:57 scaffold1053 SAMTools SNP 64094 64094 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1053 SAMTools SNP 64685 64685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1053 SAMTools SNP 66144 66144 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold1053 SAMTools SNP 66310 66310 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C29:32 scaffold1053 SAMTools SNP 67139 67139 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1053 SAMTools SNP 67615 67615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1053 SAMTools SNP 67642 67642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.43%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1053 SAMTools SNP 68206 68206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1053 SAMTools SNP 71299 71299 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C45%2C0:87 scaffold1053 SAMTools SNP 71533 71533 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1053 SAMTools SNP 77169 77169 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C53%2C103%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1053 SAMTools SNP 77189 77189 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C48%2C102%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1053 SAMTools SNP 78796 78796 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1053 SAMTools SNP 81295 81295 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1053 SAMTools SNP 164584 164584 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1053 SAMTools SNP 164634 164634 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1053 SAMTools SNP 167217 167217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.68%2C0.0083%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1053 SAMTools SNP 229483 229483 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C0.28%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1053 SAMTools SNP 229494 229494 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1053 SAMTools SNP 229831 229831 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold1053 SAMTools SNP 229845 229845 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C51%2C0:99 scaffold1053 SAMTools SNP 232478 232478 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1053 SAMTools SNP 232484 232484 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1053 SAMTools SNP 240134 240134 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1053 SAMTools SNP 240168 240168 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold1053 SAMTools SNP 299158 299158 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1053 SAMTools SNP 299200 299200 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D45.8%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C79:76 scaffold1053 SAMTools SNP 301353 301353 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1053 SAMTools SNP 301376 301376 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C175:31 scaffold1053 SAMTools SNP 301916 301916 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 306079 306079 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1053 SAMTools SNP 306114 306114 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1053 SAMTools SNP 311758 311758 23.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1053 SAMTools SNP 323122 323122 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C33%2C0:63 scaffold1053 SAMTools SNP 367643 367643 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1053 SAMTools SNP 370103 370103 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1053 SAMTools SNP 372297 372297 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1053 SAMTools SNP 376454 376454 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C223:53 scaffold1053 SAMTools SNP 379541 379541 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1053 SAMTools SNP 379567 379567 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1053 SAMTools SNP 382189 382189 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1053 SAMTools SNP 382230 382230 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold1053 SAMTools SNP 384661 384661 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.31%2C3.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1053 SAMTools SNP 384813 384813 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C0.0017%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1054 SAMTools SNP 8532 8532 120 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1054 SAMTools SNP 8681 8681 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.33%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1054 SAMTools SNP 39692 39692 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1054 SAMTools SNP 48975 48975 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1054 SAMTools SNP 69241 69241 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1054 SAMTools SNP 108083 108083 14.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1054 SAMTools SNP 140067 140067 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C239:40 scaffold1054 SAMTools SNP 140831 140831 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold1054 SAMTools SNP 141243 141243 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 148201 148201 17.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D22%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1054 SAMTools SNP 201443 201443 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C18%2C0:33 scaffold1054 SAMTools SNP 202645 202645 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1054 SAMTools SNP 202654 202654 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C0.0085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1054 SAMTools SNP 203154 203154 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0017%2C2.4e-09%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1054 SAMTools SNP 203159 203159 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.032%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1054 SAMTools SNP 203297 203297 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1054 SAMTools SNP 203303 203303 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1054 SAMTools SNP 203316 203316 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.015%2C0.33%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1054 SAMTools SNP 204676 204676 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1054 SAMTools SNP 205131 205131 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1054 SAMTools SNP 205173 205173 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1054 SAMTools SNP 205194 205194 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.52%2C0.002%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1054 SAMTools SNP 206197 206197 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C32%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.18%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1054 SAMTools SNP 208583 208583 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1054 SAMTools SNP 208973 208973 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1054 SAMTools SNP 213860 213860 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1054 SAMTools SNP 213865 213865 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C19%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.49%2C0.027%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1054 SAMTools SNP 214318 214318 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1054 SAMTools SNP 214351 214351 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1054 SAMTools SNP 219227 219227 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1054 SAMTools SNP 219283 219283 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1054 SAMTools SNP 220063 220063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1054 SAMTools SNP 220151 220151 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1054 SAMTools SNP 220464 220464 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1054 SAMTools SNP 220503 220503 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C60%2C0:99 scaffold1054 SAMTools SNP 220619 220619 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1054 SAMTools SNP 221550 221550 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1054 SAMTools SNP 224994 224994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C26%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold1054 SAMTools SNP 225012 225012 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1054 SAMTools SNP 228598 228598 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1054 SAMTools SNP 228626 228626 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1054 SAMTools SNP 275432 275432 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1054 SAMTools SNP 275826 275826 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold1054 SAMTools SNP 275880 275880 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1054 SAMTools SNP 276121 276121 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C27%2C0:51 scaffold1054 SAMTools SNP 276157 276157 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1054 SAMTools SNP 276164 276164 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold1054 SAMTools SNP 276833 276833 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 277699 277699 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 277995 277995 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1054 SAMTools SNP 278108 278108 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 278116 278116 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 278123 278123 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1054 SAMTools SNP 278488 278488 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1054 SAMTools SNP 284108 284108 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 284678 284678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1054 SAMTools SNP 284687 284687 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1054 SAMTools SNP 290016 290016 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 290215 290215 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.28%2C0.00017%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1054 SAMTools SNP 293066 293066 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.37%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1054 SAMTools SNP 293762 293762 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.59%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C248:99 scaffold1054 SAMTools SNP 294164 294164 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1054 SAMTools SNP 295088 295088 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C2.5e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C169:50 scaffold1054 SAMTools SNP 295462 295462 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C19%2C35%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1054 SAMTools SNP 296433 296433 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C13%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.37%2C1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1054 SAMTools SNP 302544 302544 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1054 SAMTools SNP 302567 302567 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1054 SAMTools SNP 304701 304701 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1054 SAMTools SNP 328001 328001 37.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C5:8 scaffold1054 SAMTools SNP 333188 333188 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 26076 26076 80.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D531%3BVDB%3D0.0233%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C9:12 scaffold1056 SAMTools SNP 32377 32377 69.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1056 SAMTools SNP 32383 32383 8.65 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0%2C40%2C0%2C34:5 scaffold1056 SAMTools SNP 34155 34155 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C21%2C52%2C5%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.044%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 34161 34161 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C24%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 35644 35644 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.58%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1056 SAMTools SNP 45885 45885 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C5.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C244:93 scaffold1056 SAMTools SNP 46524 46524 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1056 SAMTools SNP 46837 46837 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1056 SAMTools SNP 47791 47791 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.00018%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1056 SAMTools SNP 47854 47854 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.47%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1056 SAMTools SNP 47917 47917 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0089%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1056 SAMTools SNP 51059 51059 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C1%3BMQ%3D48%3BFQ%3D113%3BPV4%3D0.56%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1056 SAMTools SNP 51619 51619 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1056 SAMTools SNP 51643 51643 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1056 SAMTools SNP 51955 51955 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1056 SAMTools SNP 51994 51994 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1056 SAMTools SNP 52235 52235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 53163 53163 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1056 SAMTools SNP 53369 53369 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.00021%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C247:99 scaffold1056 SAMTools SNP 53967 53967 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C177%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 54357 54357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C111%2C7%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 56033 56033 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.14%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1056 SAMTools SNP 56840 56840 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.56%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1056 SAMTools SNP 57230 57230 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.029%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 57613 57613 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C27%2C49%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 57647 57647 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C21%2C68%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 58163 58163 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C67%2C0%2C24%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.11%2C0.42%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1056 SAMTools SNP 58171 58171 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C67%2C0%2C20%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1056 SAMTools SNP 60694 60694 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C212:99 scaffold1056 SAMTools SNP 60720 60720 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1056 SAMTools SNP 66429 66429 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.048%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold1056 SAMTools SNP 66447 66447 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold1056 SAMTools SNP 75200 75200 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C4.5e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C149:74 scaffold1056 SAMTools SNP 77141 77141 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.24%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C135:51 scaffold1056 SAMTools SNP 79298 79298 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1056 SAMTools SNP 80987 80987 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.14%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1056 SAMTools SNP 80997 80997 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1056 SAMTools SNP 81522 81522 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1056 SAMTools SNP 81939 81939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1056 SAMTools SNP 81949 81949 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1056 SAMTools SNP 82218 82218 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C216:99 scaffold1056 SAMTools SNP 89007 89007 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1056 SAMTools SNP 89031 89031 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.8e-15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1056 SAMTools SNP 89712 89712 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C41%2C13%2C44%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0039%2C2e-119%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1056 SAMTools SNP 90054 90054 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 102703 102703 38.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1056 SAMTools SNP 103012 103012 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1056 SAMTools SNP 103374 103374 35.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1056 SAMTools SNP 103867 103867 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C36%2C0:69 scaffold1056 SAMTools SNP 104052 104052 14.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold1056 SAMTools SNP 104367 104367 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1056 SAMTools SNP 104430 104430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1056 SAMTools SNP 106170 106170 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold1056 SAMTools SNP 114858 114858 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D17.6%3BPV4%3D0.4%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C50:47 scaffold1056 SAMTools SNP 115144 115144 73.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold1056 SAMTools SNP 118951 118951 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1056 SAMTools SNP 119019 119019 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C192:28 scaffold1056 SAMTools SNP 125569 125569 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C206%2C25%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-05%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 125574 125574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 125591 125591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C56%2C18%2C194%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 125658 125658 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 130769 130769 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1056 SAMTools SNP 130771 130771 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C248:54 scaffold1056 SAMTools SNP 131424 131424 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 131433 131433 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 133253 133253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C15%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 133352 133352 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C0%2C57%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.0043%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 133357 133357 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C56%2C0%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1056 SAMTools SNP 134644 134644 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1056 SAMTools SNP 139387 139387 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C636%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold1056 SAMTools SNP 140079 140079 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1056 SAMTools SNP 148598 148598 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 148869 148869 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C154:41 scaffold1056 SAMTools SNP 149416 149416 60.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold1056 SAMTools SNP 149851 149851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1056 SAMTools SNP 150323 150323 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1056 SAMTools SNP 150362 150362 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1056 SAMTools SNP 152133 152133 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1056 SAMTools SNP 152270 152270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 152296 152296 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1056 SAMTools SNP 153449 153449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1056 SAMTools SNP 153512 153512 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1056 SAMTools SNP 154177 154177 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C19%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1056 SAMTools SNP 154295 154295 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C12%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1056 SAMTools SNP 154622 154622 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1056 SAMTools SNP 154634 154634 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1056 SAMTools SNP 155100 155100 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.21%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1056 SAMTools SNP 161332 161332 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1056 SAMTools SNP 161874 161874 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C6.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1056 SAMTools SNP 189240 189240 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 192912 192912 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 192944 192944 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 193782 193782 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 230158 230158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1056 SAMTools SNP 231939 231939 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1056 SAMTools SNP 234102 234102 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1056 SAMTools SNP 236330 236330 119 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C255%2C0%2C154%2C255%2C151:99 scaffold1056 SAMTools SNP 238808 238808 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.12%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1056 SAMTools SNP 240088 240088 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C4.3e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C156:44 scaffold1056 SAMTools SNP 242956 242956 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1056 SAMTools SNP 243900 243900 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C42%2C57%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1058 SAMTools SNP 1263 1263 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C216:99 scaffold1058 SAMTools SNP 1437 1437 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold1058 SAMTools SNP 1743 1743 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1058 SAMTools SNP 2284 2284 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1058 SAMTools SNP 2381 2381 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1058 SAMTools SNP 2424 2424 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1058 SAMTools SNP 3238 3238 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1058 SAMTools SNP 3414 3414 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1058 SAMTools SNP 3659 3659 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1058 SAMTools SNP 4574 4574 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1058 SAMTools SNP 6168 6168 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D26%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold1058 SAMTools SNP 6379 6379 86.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C3%3BMQ%3D26%3BFQ%3D-34%3BPV4%3D1%2C0.34%2C0.047%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C7%2C0:12 scaffold1058 SAMTools SNP 6996 6996 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D45%3BFQ%3D28.5%3BPV4%3D1%2C0.19%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C65:58 scaffold1058 SAMTools SNP 7782 7782 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1058 SAMTools SNP 7798 7798 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1058 SAMTools SNP 7805 7805 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1058 SAMTools SNP 8195 8195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C31%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1058 SAMTools SNP 8478 8478 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C23%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C236:99 scaffold1058 SAMTools SNP 16716 16716 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold1058 SAMTools SNP 16773 16773 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1058 SAMTools SNP 37097 37097 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1058 SAMTools SNP 37149 37149 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C30%2C0:54 scaffold1058 SAMTools SNP 39968 39968 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1058 SAMTools SNP 41774 41774 6.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C15%2C0:17 scaffold1058 SAMTools SNP 45266 45266 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D43%3BFQ%3D-36%3BPV4%3D1%2C1e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold106 SAMTools SNP 62169 62169 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 147200 147200 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold106 SAMTools SNP 147227 147227 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold106 SAMTools SNP 148335 148335 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold106 SAMTools SNP 162643 162643 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C17%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.6%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold106 SAMTools SNP 168591 168591 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold106 SAMTools SNP 168675 168675 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C27%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 170147 170147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C14%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold106 SAMTools SNP 170158 170158 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.46%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 171088 171088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 171113 171113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold106 SAMTools SNP 171274 171274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold106 SAMTools SNP 172270 172270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold106 SAMTools SNP 172326 172326 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold106 SAMTools SNP 172885 172885 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C25%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold106 SAMTools SNP 173402 173402 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold106 SAMTools SNP 173414 173414 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold106 SAMTools SNP 173450 173450 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C53%2C0%2C43%3BMQ%3D50%3BFQ%3D178%3BPV4%3D4.1e-08%2C1%2C1%2C7.1e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold106 SAMTools SNP 173804 173804 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C6%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold106 SAMTools SNP 173822 173822 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.49%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold106 SAMTools SNP 177983 177983 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C30%2C0:57 scaffold106 SAMTools SNP 183759 183759 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold106 SAMTools SNP 186431 186431 8.22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold106 SAMTools SNP 194385 194385 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C24%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C254:99 scaffold106 SAMTools SNP 195305 195305 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.36%2C8.5e-13%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C169:99 scaffold106 SAMTools SNP 195477 195477 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C154:99 scaffold106 SAMTools SNP 202412 202412 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold106 SAMTools SNP 202746 202746 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold106 SAMTools SNP 202771 202771 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 204190 204190 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C114%2C0:99 scaffold106 SAMTools SNP 205769 205769 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold106 SAMTools SNP 224202 224202 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold106 SAMTools SNP 224521 224521 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold106 SAMTools SNP 224538 224538 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold106 SAMTools SNP 230267 230267 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold106 SAMTools SNP 236190 236190 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold106 SAMTools SNP 237998 237998 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14%3BPV4%3D0.33%2C0.02%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C41:44 scaffold106 SAMTools SNP 238735 238735 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C113%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.1e-40%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C255%2C0:99 scaffold106 SAMTools SNP 244832 244832 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.11%2C0.0044%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold106 SAMTools SNP 245668 245668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C9%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold106 SAMTools SNP 246475 246475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold106 SAMTools SNP 248134 248134 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C32%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold106 SAMTools SNP 248147 248147 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.12%2C0.063%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold106 SAMTools SNP 248167 248167 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C6%2C32%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold106 SAMTools SNP 248217 248217 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C18%2C0%2C17%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1.4e-10%2C1%2C1%2C3.3e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold106 SAMTools SNP 248529 248529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C75%2C0%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 248562 248562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C68%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 249312 249312 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold106 SAMTools SNP 249728 249728 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold106 SAMTools SNP 250062 250062 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C0.29%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold106 SAMTools SNP 250329 250329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 250469 250469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold106 SAMTools SNP 250546 250546 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.62%2C0.5%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold106 SAMTools SNP 250589 250589 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.46%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 250776 250776 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C14%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.16%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold106 SAMTools SNP 250800 250800 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C218:99 scaffold106 SAMTools SNP 252161 252161 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold106 SAMTools SNP 256545 256545 224 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C165:99 scaffold106 SAMTools SNP 256572 256572 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold106 SAMTools SNP 256586 256586 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold106 SAMTools SNP 256635 256635 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.35%2C0.25%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold106 SAMTools SNP 257192 257192 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 257396 257396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 258330 258330 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.55%2C0.0003%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold106 SAMTools SNP 258822 258822 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 261612 261612 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C4%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold106 SAMTools SNP 263364 263364 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C54%2C0:99 scaffold106 SAMTools SNP 269896 269896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold106 SAMTools SNP 270029 270029 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.54%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold106 SAMTools SNP 270074 270074 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C3:6 scaffold106 SAMTools SNP 270083 270083 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold106 SAMTools SNP 270110 270110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C7%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.19%2C0.47%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold106 SAMTools SNP 270683 270683 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold106 SAMTools SNP 270973 270973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold106 SAMTools SNP 271500 271500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold106 SAMTools SNP 271726 271726 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 271741 271741 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold106 SAMTools SNP 271786 271786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold106 SAMTools SNP 271946 271946 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold106 SAMTools SNP 272608 272608 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C220%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold106 SAMTools SNP 272979 272979 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C153%2C44%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 273060 273060 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C109%2C42%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C1%2C1%2C4.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 274111 274111 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C53%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C169%2C0:99 scaffold106 SAMTools SNP 274389 274389 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 274559 274559 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C54%2C0:99 scaffold106 SAMTools SNP 276629 276629 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold106 SAMTools SNP 276630 276630 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold106 SAMTools SNP 276666 276666 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold106 SAMTools SNP 277016 277016 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.27%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C195:99 scaffold106 SAMTools SNP 277300 277300 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold106 SAMTools SNP 277546 277546 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold106 SAMTools SNP 277902 277902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold106 SAMTools SNP 277938 277938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold106 SAMTools SNP 279561 279561 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold106 SAMTools SNP 279581 279581 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C186:99 scaffold106 SAMTools SNP 279609 279609 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold106 SAMTools SNP 279762 279762 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 280166 280166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold106 SAMTools SNP 280172 280172 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold106 SAMTools SNP 280549 280549 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C2%3BMQ%3D41%3BFQ%3D161%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C246:99 scaffold106 SAMTools SNP 280686 280686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D42%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold106 SAMTools SNP 281764 281764 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold106 SAMTools SNP 281771 281771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 281792 281792 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 281851 281851 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold106 SAMTools SNP 282017 282017 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold106 SAMTools SNP 282074 282074 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.018%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold106 SAMTools SNP 282113 282113 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold106 SAMTools SNP 282581 282581 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold106 SAMTools SNP 282737 282737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold106 SAMTools SNP 282746 282746 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold106 SAMTools SNP 283630 283630 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold106 SAMTools SNP 284906 284906 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold106 SAMTools SNP 289325 289325 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.5%2C3e-16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C175:86 scaffold106 SAMTools SNP 289526 289526 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold106 SAMTools SNP 290108 290108 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.6e-10%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C201:42 scaffold106 SAMTools SNP 290125 290125 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C45%2C0:87 scaffold106 SAMTools SNP 292068 292068 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold106 SAMTools SNP 292085 292085 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold106 SAMTools SNP 294060 294060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold106 SAMTools SNP 294074 294074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold106 SAMTools SNP 296515 296515 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold106 SAMTools SNP 296518 296518 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.48%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C220:99 scaffold106 SAMTools SNP 296519 296519 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C224:43 scaffold106 SAMTools SNP 296520 296520 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C4.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C223:99 scaffold106 SAMTools SNP 300395 300395 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold106 SAMTools SNP 300732 300732 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold106 SAMTools SNP 300780 300780 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D42.3%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C74:72 scaffold106 SAMTools SNP 301164 301164 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold106 SAMTools SNP 301385 301385 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold106 SAMTools SNP 301450 301450 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 308994 308994 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C234:99 scaffold106 SAMTools SNP 309261 309261 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold106 SAMTools SNP 309279 309279 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold106 SAMTools SNP 309828 309828 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold106 SAMTools SNP 310751 310751 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C8%2C0%3BMQ%3D49%3BFQ%3D93%3BPV4%3D0.29%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold106 SAMTools SNP 310791 310791 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.32%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold106 SAMTools SNP 310798 310798 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 313814 313814 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold106 SAMTools SNP 314073 314073 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold106 SAMTools SNP 314196 314196 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold106 SAMTools SNP 314307 314307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold106 SAMTools SNP 314442 314442 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 314481 314481 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 314490 314490 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 314664 314664 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 317616 317616 55.8 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold106 SAMTools SNP 317617 317617 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold106 SAMTools SNP 317646 317646 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C231:97 scaffold106 SAMTools SNP 317648 317648 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C94:97 scaffold106 SAMTools SNP 319466 319466 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C231:97 scaffold106 SAMTools SNP 319491 319491 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C231:97 scaffold106 SAMTools SNP 336975 336975 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold106 SAMTools SNP 339154 339154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 339422 339422 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 339440 339440 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold106 SAMTools SNP 339452 339452 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C185:99 scaffold106 SAMTools SNP 339473 339473 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold106 SAMTools SNP 339848 339848 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.3%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold106 SAMTools SNP 340150 340150 88.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold106 SAMTools SNP 340935 340935 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C236:99 scaffold106 SAMTools SNP 340944 340944 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.19%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold106 SAMTools SNP 342209 342209 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.099%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C227:99 scaffold106 SAMTools SNP 343807 343807 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold106 SAMTools SNP 346797 346797 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 346803 346803 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 347809 347809 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold106 SAMTools SNP 347946 347946 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold106 SAMTools SNP 348243 348243 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 349257 349257 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 349608 349608 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold106 SAMTools SNP 349646 349646 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0011%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold106 SAMTools SNP 349779 349779 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C202:69 scaffold106 SAMTools SNP 352822 352822 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 357253 357253 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 357264 357264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 357623 357623 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.4%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C138:89 scaffold106 SAMTools SNP 357669 357669 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C114:71 scaffold106 SAMTools SNP 357720 357720 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold106 SAMTools SNP 358221 358221 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 359300 359300 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold106 SAMTools SNP 359408 359408 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold106 SAMTools SNP 359460 359460 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold106 SAMTools SNP 368562 368562 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold106 SAMTools SNP 368687 368687 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold106 SAMTools SNP 368691 368691 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 368712 368712 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 368867 368867 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold106 SAMTools SNP 368897 368897 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold106 SAMTools SNP 370307 370307 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold106 SAMTools SNP 371357 371357 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 371372 371372 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold106 SAMTools SNP 373869 373869 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C18%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.021%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold106 SAMTools SNP 373891 373891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 374257 374257 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold106 SAMTools SNP 374335 374335 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold106 SAMTools SNP 374671 374671 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold106 SAMTools SNP 374740 374740 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold106 SAMTools SNP 375255 375255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold106 SAMTools SNP 375392 375392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold106 SAMTools SNP 375490 375490 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold106 SAMTools SNP 376198 376198 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C67:51 scaffold106 SAMTools SNP 378150 378150 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold106 SAMTools SNP 378160 378160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold106 SAMTools SNP 380210 380210 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold106 SAMTools SNP 380282 380282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold106 SAMTools SNP 380303 380303 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C34%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 381330 381330 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 382893 382893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C72%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold106 SAMTools SNP 385229 385229 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.51%2C1.6e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold106 SAMTools SNP 387661 387661 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C32%2C11%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.27%2C6.1e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold106 SAMTools SNP 387925 387925 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C9%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.18%2C1.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold106 SAMTools SNP 389828 389828 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold106 SAMTools SNP 390662 390662 60.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold106 SAMTools SNP 391237 391237 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C0%2C12%3BMQ%3D45%3BFQ%3D126%3BPV4%3D3.4e-05%2C0.072%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold106 SAMTools SNP 391243 391243 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C17%2C0%2C15%3BMQ%3D46%3BFQ%3D139%3BPV4%3D2.1e-06%2C0.19%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold106 SAMTools SNP 394547 394547 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 395755 395755 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D2e-05%2C1.6e-05%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold106 SAMTools SNP 395757 395757 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.021%2C0.0023%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold106 SAMTools SNP 395840 395840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C57%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold106 SAMTools SNP 396169 396169 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold106 SAMTools SNP 396196 396196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold106 SAMTools SNP 396728 396728 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold106 SAMTools SNP 396780 396780 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold106 SAMTools SNP 397145 397145 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold106 SAMTools SNP 397385 397385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold106 SAMTools SNP 397443 397443 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 397585 397585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C6%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold106 SAMTools SNP 397606 397606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold106 SAMTools SNP 397642 397642 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold106 SAMTools SNP 400049 400049 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 400065 400065 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.41%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold106 SAMTools SNP 400145 400145 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C21%3BMQ%3D50%3BFQ%3D73%3BPV4%3D5.6e-05%2C2.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold106 SAMTools SNP 400953 400953 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00014%2C1.2e-11%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold106 SAMTools SNP 401288 401288 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C9%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0061%2C0.26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold106 SAMTools SNP 401492 401492 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold106 SAMTools SNP 402448 402448 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C9%2C67%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1.3e-13%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 402869 402869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C5%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold106 SAMTools SNP 403628 403628 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C33%2C0:63 scaffold106 SAMTools SNP 404176 404176 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold106 SAMTools SNP 404564 404564 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold106 SAMTools SNP 405155 405155 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C112:52 scaffold106 SAMTools SNP 405464 405464 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold106 SAMTools SNP 405476 405476 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold106 SAMTools SNP 405477 405477 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold106 SAMTools SNP 405516 405516 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.087%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold106 SAMTools SNP 405959 405959 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold106 SAMTools SNP 406557 406557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 406571 406571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 407125 407125 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 407167 407167 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 408118 408118 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C26:29 scaffold106 SAMTools SNP 408403 408403 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold106 SAMTools SNP 408792 408792 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold106 SAMTools SNP 408987 408987 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold106 SAMTools SNP 411661 411661 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold106 SAMTools SNP 412113 412113 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C54:57 scaffold106 SAMTools SNP 413460 413460 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold106 SAMTools SNP 416347 416347 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 417155 417155 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold106 SAMTools SNP 417897 417897 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold106 SAMTools SNP 418370 418370 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold106 SAMTools SNP 418379 418379 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C18%2C0:33 scaffold106 SAMTools SNP 418471 418471 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 418502 418502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold106 SAMTools SNP 418815 418815 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold106 SAMTools SNP 418901 418901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold106 SAMTools SNP 419043 419043 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.011%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold106 SAMTools SNP 419079 419079 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold106 SAMTools SNP 419677 419677 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold106 SAMTools SNP 420081 420081 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold106 SAMTools SNP 421437 421437 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.007%2C1.6e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C245:77 scaffold106 SAMTools SNP 421440 421440 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.035%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold106 SAMTools SNP 421894 421894 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.58%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold106 SAMTools SNP 422158 422158 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.023%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold106 SAMTools SNP 422205 422205 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 422258 422258 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold106 SAMTools SNP 422791 422791 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C173:63 scaffold106 SAMTools SNP 422928 422928 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold106 SAMTools SNP 423329 423329 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 424121 424121 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 424494 424494 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C2.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C243:99 scaffold106 SAMTools SNP 424658 424658 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold106 SAMTools SNP 424671 424671 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.085%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold106 SAMTools SNP 427803 427803 127 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0049%2C0.062%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold106 SAMTools SNP 496670 496670 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 496715 496715 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 514794 514794 25.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold106 SAMTools SNP 514947 514947 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold106 SAMTools SNP 530856 530856 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0062%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold106 SAMTools SNP 530922 530922 7.07 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D0.25%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C5%2C0:6 scaffold106 SAMTools SNP 588325 588325 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 588341 588341 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 589750 589750 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold106 SAMTools SNP 590691 590691 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.18%2C0.017%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold106 SAMTools SNP 591135 591135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold106 SAMTools SNP 591138 591138 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold106 SAMTools SNP 595494 595494 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold106 SAMTools SNP 596436 596436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold106 SAMTools SNP 596456 596456 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold106 SAMTools SNP 596970 596970 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold106 SAMTools SNP 597012 597012 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold106 SAMTools SNP 597158 597158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold106 SAMTools SNP 597646 597646 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold106 SAMTools SNP 597657 597657 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold106 SAMTools SNP 599907 599907 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold106 SAMTools SNP 600018 600018 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 634062 634062 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold106 SAMTools SNP 634104 634104 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold106 SAMTools SNP 634129 634129 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold106 SAMTools SNP 634346 634346 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.00019%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold106 SAMTools SNP 634360 634360 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold106 SAMTools SNP 634813 634813 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C77:80 scaffold106 SAMTools SNP 635016 635016 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.6e-05%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold106 SAMTools SNP 635729 635729 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold106 SAMTools SNP 650767 650767 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold106 SAMTools SNP 651016 651016 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C87%2C3%2C16%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.42%2C0.018%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold106 SAMTools SNP 652454 652454 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.02%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C217:99 scaffold106 SAMTools SNP 652476 652476 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold106 SAMTools SNP 652619 652619 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold106 SAMTools SNP 653093 653093 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold106 SAMTools SNP 653114 653114 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold106 SAMTools SNP 653145 653145 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold106 SAMTools SNP 653974 653974 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold106 SAMTools SNP 654794 654794 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.031%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C231:99 scaffold106 SAMTools SNP 654980 654980 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold106 SAMTools SNP 655132 655132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold106 SAMTools SNP 655150 655150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold106 SAMTools SNP 655199 655199 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold106 SAMTools SNP 655453 655453 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold106 SAMTools SNP 655694 655694 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold106 SAMTools SNP 687969 687969 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C9:12 scaffold106 SAMTools SNP 687995 687995 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold106 SAMTools SNP 688410 688410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold106 SAMTools SNP 688434 688434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold106 SAMTools SNP 688784 688784 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C20%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.00014%2C0.00088%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold106 SAMTools SNP 688796 688796 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold106 SAMTools SNP 688865 688865 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C26%2C35%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1.5e-59%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold106 SAMTools SNP 689259 689259 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C15%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C249:99 scaffold106 SAMTools SNP 689286 689286 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold106 SAMTools SNP 689322 689322 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold106 SAMTools SNP 689593 689593 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold106 SAMTools SNP 689605 689605 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C24:27 scaffold106 SAMTools SNP 689722 689722 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C0.41%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold106 SAMTools SNP 690020 690020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold106 SAMTools SNP 690029 690029 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0047%2C0.26%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C147:99 scaffold106 SAMTools SNP 715657 715657 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold106 SAMTools SNP 715666 715666 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 3358 3358 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D41%3BFQ%3D75.9%3BPV4%3D1%2C0.4%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C105:99 scaffold1061 SAMTools SNP 3672 3672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D38%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1061 SAMTools SNP 4897 4897 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.0088%2C1%2C0.02%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1061 SAMTools SNP 4912 4912 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C2%3BMQ%3D48%3BFQ%3D62%3BPV4%3D0.18%2C0.027%2C0.058%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1061 SAMTools SNP 5275 5275 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1061 SAMTools SNP 72504 72504 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 163557 163557 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1061 SAMTools SNP 172353 172353 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1061 SAMTools SNP 172372 172372 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.034%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold1061 SAMTools SNP 172396 172396 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C235:99 scaffold1061 SAMTools SNP 172400 172400 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.16%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C225:99 scaffold1061 SAMTools SNP 173589 173589 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.038%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1061 SAMTools SNP 174594 174594 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C16%2C36%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0027%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1061 SAMTools SNP 174630 174630 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C2%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 175538 175538 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C67%2C89%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 176048 176048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C36%2C5%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-11%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 176112 176112 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C49%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-10%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 178466 178466 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C0%2C14%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.02%2C1.8e-28%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1061 SAMTools SNP 178634 178634 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1233%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D590%2C14%2C584%2C43%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.00013%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1061 SAMTools SNP 183916 183916 40.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1061 SAMTools SNP 184033 184033 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C39%2C0:75 scaffold1061 SAMTools SNP 185753 185753 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0064%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1061 SAMTools SNP 185769 185769 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.067%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C178:99 scaffold1061 SAMTools SNP 190650 190650 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.27%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1061 SAMTools SNP 190975 190975 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.075%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1061 SAMTools SNP 191212 191212 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.24%2C4.6e-11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C215:61 scaffold1061 SAMTools SNP 191365 191365 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1061 SAMTools SNP 191529 191529 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1061 SAMTools SNP 192342 192342 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold1061 SAMTools SNP 192781 192781 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1061 SAMTools SNP 192798 192798 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.48%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1061 SAMTools SNP 193907 193907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1061 SAMTools SNP 193955 193955 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1061 SAMTools SNP 193975 193975 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.5%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1061 SAMTools SNP 195025 195025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1061 SAMTools SNP 197487 197487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 197592 197592 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1061 SAMTools SNP 206176 206176 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 213837 213837 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1061 SAMTools SNP 213852 213852 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1061 SAMTools SNP 222623 222623 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1061 SAMTools SNP 222631 222631 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1061 SAMTools SNP 222919 222919 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0047%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1061 SAMTools SNP 222934 222934 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00016%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1061 SAMTools SNP 227884 227884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1061 SAMTools SNP 228381 228381 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold1061 SAMTools SNP 230399 230399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1061 SAMTools SNP 230410 230410 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold1061 SAMTools SNP 231757 231757 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1061 SAMTools SNP 231912 231912 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1061 SAMTools SNP 232262 232262 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1061 SAMTools SNP 232414 232414 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1061 SAMTools SNP 232429 232429 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.11%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C196:96 scaffold1061 SAMTools SNP 232949 232949 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1061 SAMTools SNP 232980 232980 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1061 SAMTools SNP 234351 234351 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1061 SAMTools SNP 234585 234585 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1061 SAMTools SNP 234630 234630 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1061 SAMTools SNP 235124 235124 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 236281 236281 96.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold1061 SAMTools SNP 236618 236618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 236987 236987 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 237013 237013 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1061 SAMTools SNP 238976 238976 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1061 SAMTools SNP 239144 239144 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 239161 239161 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1061 SAMTools SNP 239180 239180 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1061 SAMTools SNP 241063 241063 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1061 SAMTools SNP 249874 249874 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1061 SAMTools SNP 255371 255371 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C93:96 scaffold1061 SAMTools SNP 255412 255412 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1061 SAMTools SNP 257361 257361 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C90:93 scaffold1061 SAMTools SNP 257878 257878 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1061 SAMTools SNP 257899 257899 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1061 SAMTools SNP 258876 258876 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1061 SAMTools SNP 259235 259235 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1061 SAMTools SNP 259750 259750 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1061 SAMTools SNP 259791 259791 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1061 SAMTools SNP 259879 259879 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1061 SAMTools SNP 259894 259894 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1061 SAMTools SNP 260243 260243 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 260281 260281 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C251:99 scaffold1061 SAMTools SNP 264496 264496 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1061 SAMTools SNP 265022 265022 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C5%2C60%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.17%2C9.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1061 SAMTools SNP 265754 265754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 265877 265877 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1061 SAMTools SNP 266322 266322 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1061 SAMTools SNP 266355 266355 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 266400 266400 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C13%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1061 SAMTools SNP 267473 267473 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1061 SAMTools SNP 267564 267564 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 270407 270407 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 270482 270482 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C36%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1061 SAMTools SNP 270605 270605 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C13%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 271168 271168 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.14%2C0.011%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1061 SAMTools SNP 271890 271890 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 272328 272328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C50%2C41%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C5.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 272355 272355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C8%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D0.18%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1061 SAMTools SNP 277404 277404 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1061 SAMTools SNP 278459 278459 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1061 SAMTools SNP 278492 278492 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.25%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold1061 SAMTools SNP 278525 278525 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.45%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C235:54 scaffold1061 SAMTools SNP 278582 278582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 279134 279134 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 279197 279197 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 280708 280708 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1061 SAMTools SNP 280745 280745 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1061 SAMTools SNP 280921 280921 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1061 SAMTools SNP 282125 282125 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1061 SAMTools SNP 282173 282173 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1061 SAMTools SNP 282524 282524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1061 SAMTools SNP 282587 282587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1061 SAMTools SNP 283244 283244 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.29%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1061 SAMTools SNP 283274 283274 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 287951 287951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 288010 288010 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.64%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1061 SAMTools SNP 288608 288608 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C52%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.19%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1061 SAMTools SNP 288826 288826 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C46%2C4%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1061 SAMTools SNP 289112 289112 86.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.32%2C5.2e-09%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C7%2C0:12 scaffold1061 SAMTools SNP 289255 289255 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1061 SAMTools SNP 311431 311431 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 312632 312632 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1061 SAMTools SNP 314953 314953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C5%2C30%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 314978 314978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C74%2C9%3BMQ%3D50%3BFQ%3D-230%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C203%2C0:99 scaffold1061 SAMTools SNP 315013 315013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C60%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1061 SAMTools SNP 320507 320507 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 320537 320537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 334549 334549 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 334582 334582 88 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold1061 SAMTools SNP 340723 340723 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C3%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C1%2C0.04%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 340773 340773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1061 SAMTools SNP 341617 341617 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1061 SAMTools SNP 346165 346165 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1061 SAMTools SNP 349532 349532 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1061 SAMTools SNP 391973 391973 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C94%2C0%3BMQ%3D50%3BFQ%3D-248%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C221%2C0:99 scaffold1061 SAMTools SNP 392312 392312 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1061 SAMTools SNP 392399 392399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1061 SAMTools SNP 392661 392661 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.55%2C0.005%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1061 SAMTools SNP 392668 392668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C19%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1061 SAMTools SNP 393228 393228 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1061 SAMTools SNP 394717 394717 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1061 SAMTools SNP 397992 397992 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1061 SAMTools SNP 411941 411941 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.53%2C0.17%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1061 SAMTools SNP 412663 412663 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1061 SAMTools SNP 413317 413317 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C255%2C0:99 scaffold1061 SAMTools SNP 414397 414397 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1061 SAMTools SNP 414549 414549 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1061 SAMTools SNP 424452 424452 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1061 SAMTools SNP 424574 424574 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1061 SAMTools SNP 424590 424590 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1061 SAMTools SNP 427514 427514 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1438%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-129%3BPV4%3D0.13%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1061 SAMTools SNP 427572 427572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1391%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1325%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1061 SAMTools SNP 448022 448022 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1061 SAMTools SNP 448122 448122 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold1061 SAMTools SNP 449776 449776 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1061 SAMTools SNP 449789 449789 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C42%2C0:81 scaffold1061 SAMTools SNP 450815 450815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1061 SAMTools SNP 450824 450824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1061 SAMTools SNP 451233 451233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1061 SAMTools SNP 451618 451618 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1061 SAMTools SNP 453899 453899 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1061 SAMTools SNP 454986 454986 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1061 SAMTools SNP 455814 455814 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1061 SAMTools SNP 456214 456214 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1061 SAMTools SNP 457086 457086 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C54%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1061 SAMTools SNP 457121 457121 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1061 SAMTools SNP 457181 457181 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C27%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1061 SAMTools SNP 458344 458344 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1061 SAMTools SNP 460888 460888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1061 SAMTools SNP 460972 460972 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1061 SAMTools SNP 460981 460981 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold1061 SAMTools SNP 461605 461605 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1061 SAMTools SNP 470501 470501 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C16%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1061 SAMTools SNP 471241 471241 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C42%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C187%2C0:99 scaffold1061 SAMTools SNP 471277 471277 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C6%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1061 SAMTools SNP 471837 471837 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C62%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1061 SAMTools SNP 472303 472303 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C0%2C14%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0011%2C1%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1061 SAMTools SNP 472394 472394 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1061 SAMTools SNP 474500 474500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1061 SAMTools SNP 481589 481589 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold1061 SAMTools SNP 485828 485828 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1061 SAMTools SNP 486286 486286 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1061 SAMTools SNP 487774 487774 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1061 SAMTools SNP 487845 487845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1061 SAMTools SNP 487953 487953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C36%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1061 SAMTools SNP 488493 488493 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold1061 SAMTools SNP 489296 489296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1061 SAMTools SNP 491273 491273 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C18%2C0:33 scaffold1061 SAMTools SNP 493923 493923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1061 SAMTools SNP 493955 493955 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1061 SAMTools SNP 496396 496396 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1061 SAMTools SNP 496414 496414 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.33%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold1062 SAMTools SNP 7448 7448 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1062 SAMTools SNP 7462 7462 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1062 SAMTools SNP 7485 7485 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1062 SAMTools SNP 7888 7888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C2%3BMQ%3D49%3BFQ%3D-117%3BPV4%3D0.071%2C1%2C0.41%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1062 SAMTools SNP 7934 7934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1062 SAMTools SNP 69429 69429 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1062 SAMTools SNP 80446 80446 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C132:31 scaffold1064 SAMTools SNP 18892 18892 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1064 SAMTools SNP 20895 20895 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.38%2C0.27%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1064 SAMTools SNP 21546 21546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1064 SAMTools SNP 21594 21594 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1064 SAMTools SNP 21603 21603 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1064 SAMTools SNP 30343 30343 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1064 SAMTools SNP 30393 30393 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1064 SAMTools SNP 30798 30798 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1064 SAMTools SNP 31061 31061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 31504 31504 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C59%2C2%2C29%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00015%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1064 SAMTools SNP 31518 31518 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C66%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 32967 32967 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C3%2C47%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C7.6e-26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1064 SAMTools SNP 33063 33063 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1064 SAMTools SNP 33511 33511 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1064 SAMTools SNP 34836 34836 67.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1064 SAMTools SNP 35507 35507 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C230%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 39709 39709 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C298%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 41358 41358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C300%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 43072 43072 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C28%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C6.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1064 SAMTools SNP 43533 43533 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.31%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C232:99 scaffold1064 SAMTools SNP 43584 43584 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C0.28%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1064 SAMTools SNP 46070 46070 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1064 SAMTools SNP 46082 46082 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 46308 46308 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1064 SAMTools SNP 46453 46453 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1064 SAMTools SNP 47748 47748 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 47799 47799 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C54%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 48050 48050 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C14%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.3%2C1%2C1%2C4.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1064 SAMTools SNP 49046 49046 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C88%2C23%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 49383 49383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 49408 49408 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.032%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 49706 49706 66.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0%2C91%2C4%2C88:39 scaffold1064 SAMTools SNP 54007 54007 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1064 SAMTools SNP 54025 54025 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold1064 SAMTools SNP 54073 54073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 54369 54369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C53%2C41%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 54383 54383 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C50%2C57%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C0.16%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 54411 54411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C53%2C52%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 55012 55012 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1064 SAMTools SNP 55042 55042 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1064 SAMTools SNP 56212 56212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C20%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.3e-06%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 56290 56290 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C59%2C0%2C33%3BMQ%3D49%3BFQ%3D78%3BPV4%3D1%2C1.5e-30%2C0.34%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1064 SAMTools SNP 56465 56465 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1064 SAMTools SNP 56474 56474 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1064 SAMTools SNP 57221 57221 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.47%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C228:42 scaffold1064 SAMTools SNP 57237 57237 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C199:99 scaffold1064 SAMTools SNP 57256 57256 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.014%2C0.00023%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1064 SAMTools SNP 57288 57288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1064 SAMTools SNP 89334 89334 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1064 SAMTools SNP 90468 90468 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1064 SAMTools SNP 93925 93925 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1064 SAMTools SNP 95500 95500 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1064 SAMTools SNP 113732 113732 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1064 SAMTools SNP 126327 126327 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C109%2C0%2C94%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0027%2C3.9e-206%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1064 SAMTools SNP 126940 126940 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C6%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1064 SAMTools SNP 131605 131605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C17%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C0.15%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1064 SAMTools SNP 131982 131982 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.61%2C4.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1064 SAMTools SNP 132488 132488 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C48%2C0:93 scaffold1066 SAMTools SNP 1306 1306 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C54%2C0:99 scaffold1066 SAMTools SNP 1398 1398 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C35:38 scaffold1066 SAMTools SNP 1539 1539 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1066 SAMTools SNP 38244 38244 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1066 SAMTools SNP 39154 39154 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1066 SAMTools SNP 97401 97401 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1066 SAMTools SNP 123283 123283 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1066 SAMTools SNP 127911 127911 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1066 SAMTools SNP 128779 128779 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1066 SAMTools SNP 168363 168363 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1066 SAMTools SNP 168760 168760 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1066 SAMTools SNP 185959 185959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1066 SAMTools SNP 271872 271872 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D46%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1066 SAMTools SNP 274167 274167 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1066 SAMTools SNP 274171 274171 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1066 SAMTools SNP 274672 274672 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1066 SAMTools SNP 274681 274681 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1066 SAMTools SNP 274780 274780 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C206:99 scaffold1066 SAMTools SNP 278857 278857 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C12%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1066 SAMTools SNP 278926 278926 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.16%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C66:69 scaffold1066 SAMTools SNP 278945 278945 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1066 SAMTools SNP 278971 278971 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1066 SAMTools SNP 278980 278980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold1066 SAMTools SNP 283443 283443 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.32%2C5.7e-06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1066 SAMTools SNP 284091 284091 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.42%2C3e-08%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C231:99 scaffold1066 SAMTools SNP 287990 287990 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C87:40 scaffold1066 SAMTools SNP 289380 289380 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1066 SAMTools SNP 289395 289395 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1066 SAMTools SNP 292478 292478 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C43%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold1066 SAMTools SNP 292502 292502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1066 SAMTools SNP 292573 292573 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C78%2C0:99 scaffold1066 SAMTools SNP 303873 303873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C94%2C291%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1066 SAMTools SNP 305872 305872 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C47%2C85%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1066 SAMTools SNP 306352 306352 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C103%2C5%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1066 SAMTools SNP 306944 306944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C45%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1066 SAMTools SNP 310302 310302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1067 SAMTools SNP 14406 14406 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D1%2C2.8e-18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C79:71 scaffold1067 SAMTools SNP 17967 17967 74.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C1%2C7%2C0%3BMQ%3D24%3BFQ%3D-32%3BPV4%3D0.46%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C5%2C0:9 scaffold1067 SAMTools SNP 21458 21458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1067 SAMTools SNP 21701 21701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1067 SAMTools SNP 21728 21728 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.6%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1067 SAMTools SNP 22333 22333 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.063%2C0.06%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1067 SAMTools SNP 26276 26276 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1067 SAMTools SNP 26291 26291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1067 SAMTools SNP 26303 26303 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C30%2C0:57 scaffold1067 SAMTools SNP 26432 26432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1067 SAMTools SNP 35338 35338 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C6%2C33%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.0088%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1067 SAMTools SNP 35346 35346 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C8%2C22%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.68%2C0.21%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1067 SAMTools SNP 55757 55757 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C36%2C0:69 scaffold1067 SAMTools SNP 73345 73345 4.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C1%2C0:5 scaffold1067 SAMTools SNP 73474 73474 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1067 SAMTools SNP 73735 73735 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1067 SAMTools SNP 77734 77734 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1067 SAMTools SNP 78636 78636 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C184:28 scaffold1067 SAMTools SNP 82195 82195 18.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1067 SAMTools SNP 83522 83522 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold107 SAMTools SNP 3015 3015 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold107 SAMTools SNP 109284 109284 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold107 SAMTools SNP 109501 109501 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 111040 111040 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold107 SAMTools SNP 111050 111050 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 121750 121750 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 121773 121773 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 293369 293369 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 294638 294638 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold107 SAMTools SNP 314128 314128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold107 SAMTools SNP 314342 314342 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold107 SAMTools SNP 314348 314348 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0081%2C1%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold107 SAMTools SNP 314471 314471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 314819 314819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 314875 314875 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C82%2C212%2C66%3BMQ%3D50%3BFQ%3D139%3BPV4%3D5.2e-36%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold107 SAMTools SNP 323226 323226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold107 SAMTools SNP 324015 324015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0017%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold107 SAMTools SNP 324473 324473 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold107 SAMTools SNP 325098 325098 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold107 SAMTools SNP 325116 325116 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 327765 327765 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold107 SAMTools SNP 327813 327813 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C94:46 scaffold107 SAMTools SNP 327828 327828 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C21%2C0:39 scaffold107 SAMTools SNP 328014 328014 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold107 SAMTools SNP 379664 379664 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold107 SAMTools SNP 436976 436976 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D469%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C222%2C227%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold107 SAMTools SNP 444289 444289 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C25%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 446032 446032 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C4%2C23%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.38%2C4.6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold107 SAMTools SNP 446245 446245 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C74:42 scaffold107 SAMTools SNP 458387 458387 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold107 SAMTools SNP 458425 458425 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 458447 458447 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold107 SAMTools SNP 459851 459851 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold107 SAMTools SNP 462444 462444 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 462968 462968 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold107 SAMTools SNP 462982 462982 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0059%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C25:28 scaffold107 SAMTools SNP 463212 463212 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 463278 463278 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 463296 463296 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 463681 463681 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 466020 466020 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold107 SAMTools SNP 466026 466026 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C240:99 scaffold107 SAMTools SNP 466041 466041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C239:99 scaffold107 SAMTools SNP 466202 466202 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold107 SAMTools SNP 470112 470112 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C49%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold107 SAMTools SNP 470196 470196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C26%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 470571 470571 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C220:69 scaffold107 SAMTools SNP 470624 470624 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold107 SAMTools SNP 470639 470639 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold107 SAMTools SNP 507246 507246 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C114%2C0:99 scaffold107 SAMTools SNP 507548 507548 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold107 SAMTools SNP 507586 507586 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C24%2C0:45 scaffold107 SAMTools SNP 507908 507908 27.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold107 SAMTools SNP 513358 513358 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold107 SAMTools SNP 513378 513378 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold107 SAMTools SNP 514050 514050 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold107 SAMTools SNP 516884 516884 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.6%2C0.4%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold107 SAMTools SNP 517296 517296 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C15%2C0:27 scaffold107 SAMTools SNP 517722 517722 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C30%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 517854 517854 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold107 SAMTools SNP 518167 518167 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 518206 518206 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 520668 520668 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold107 SAMTools SNP 521551 521551 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold107 SAMTools SNP 534724 534724 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold107 SAMTools SNP 534769 534769 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold107 SAMTools SNP 534775 534775 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.26%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold107 SAMTools SNP 534778 534778 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C248:99 scaffold107 SAMTools SNP 542410 542410 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C35%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.41%2C2.6e-53%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold107 SAMTools SNP 544314 544314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold107 SAMTools SNP 544317 544317 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 544350 544350 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 544410 544410 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold107 SAMTools SNP 545129 545129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold107 SAMTools SNP 545162 545162 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.53%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold107 SAMTools SNP 545643 545643 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C8%2C13%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.1%2C2.8e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold107 SAMTools SNP 545849 545849 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold107 SAMTools SNP 545855 545855 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.044%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold107 SAMTools SNP 546356 546356 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold107 SAMTools SNP 546387 546387 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold107 SAMTools SNP 552741 552741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 553600 553600 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 553609 553609 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C221:99 scaffold107 SAMTools SNP 554060 554060 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold107 SAMTools SNP 554087 554087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C237%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold107 SAMTools SNP 554186 554186 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C1%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.12%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C225:61 scaffold107 SAMTools SNP 554195 554195 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C2%2C15%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.13%2C2.1e-12%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C250:99 scaffold107 SAMTools SNP 556143 556143 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold107 SAMTools SNP 557281 557281 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 557364 557364 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold107 SAMTools SNP 557373 557373 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold107 SAMTools SNP 557388 557388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold107 SAMTools SNP 557427 557427 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.42%2C0.055%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C237:99 scaffold107 SAMTools SNP 557867 557867 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C9.1e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold107 SAMTools SNP 557870 557870 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.47%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold107 SAMTools SNP 557894 557894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C23%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold107 SAMTools SNP 558667 558667 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C14%2C59%2C36%3BMQ%3D50%3BFQ%3D111%3BPV4%3D7.1e-05%2C1.3e-147%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold107 SAMTools SNP 574579 574579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 574618 574618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold107 SAMTools SNP 574678 574678 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold107 SAMTools SNP 574953 574953 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold107 SAMTools SNP 575046 575046 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold107 SAMTools SNP 576292 576292 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C0:57 scaffold107 SAMTools SNP 576337 576337 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C110:39 scaffold107 SAMTools SNP 576434 576434 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D49.4%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C85:79 scaffold107 SAMTools SNP 580199 580199 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold107 SAMTools SNP 580208 580208 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C8.8e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold107 SAMTools SNP 580592 580592 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold107 SAMTools SNP 580616 580616 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold107 SAMTools SNP 581471 581471 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 581733 581733 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 581832 581832 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 582463 582463 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 582523 582523 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold107 SAMTools SNP 582878 582878 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold107 SAMTools SNP 584038 584038 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold107 SAMTools SNP 584061 584061 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C27%2C0:51 scaffold107 SAMTools SNP 584447 584447 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold107 SAMTools SNP 589155 589155 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 589494 589494 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 589953 589953 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold107 SAMTools SNP 590077 590077 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold107 SAMTools SNP 590078 590078 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold107 SAMTools SNP 590537 590537 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 591233 591233 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 591369 591369 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C184:99 scaffold107 SAMTools SNP 591410 591410 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.042%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 591702 591702 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.097%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C212:59 scaffold107 SAMTools SNP 592017 592017 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 592020 592020 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 592285 592285 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold107 SAMTools SNP 592823 592823 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold107 SAMTools SNP 592915 592915 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold107 SAMTools SNP 592980 592980 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold107 SAMTools SNP 593276 593276 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold107 SAMTools SNP 593309 593309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold107 SAMTools SNP 593822 593822 63.8 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold107 SAMTools SNP 593825 593825 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 594192 594192 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 594309 594309 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C66%2C0:99 scaffold107 SAMTools SNP 594390 594390 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold107 SAMTools SNP 594618 594618 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold107 SAMTools SNP 594931 594931 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 595069 595069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 595237 595237 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold107 SAMTools SNP 595500 595500 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold107 SAMTools SNP 596557 596557 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold107 SAMTools SNP 596571 596571 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold107 SAMTools SNP 597088 597088 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold107 SAMTools SNP 602007 602007 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 602210 602210 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C38:41 scaffold107 SAMTools SNP 602450 602450 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold107 SAMTools SNP 602588 602588 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 606859 606859 27.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold107 SAMTools SNP 606883 606883 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C27:31 scaffold107 SAMTools SNP 607431 607431 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.58%2C2.7e-17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold107 SAMTools SNP 607987 607987 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1.2e-07%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C20:23 scaffold107 SAMTools SNP 608401 608401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 608431 608431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold107 SAMTools SNP 608467 608467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold107 SAMTools SNP 608648 608648 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold107 SAMTools SNP 609977 609977 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold107 SAMTools SNP 610121 610121 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 610412 610412 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.079%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold107 SAMTools SNP 611342 611342 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold107 SAMTools SNP 611381 611381 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold107 SAMTools SNP 611385 611385 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold107 SAMTools SNP 611402 611402 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.43%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold107 SAMTools SNP 611756 611756 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 611795 611795 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold107 SAMTools SNP 612268 612268 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold107 SAMTools SNP 612388 612388 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C7.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C232:99 scaffold107 SAMTools SNP 612976 612976 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 613278 613278 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 613960 613960 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold107 SAMTools SNP 614625 614625 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C165:84 scaffold107 SAMTools SNP 614670 614670 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C33%2C0:63 scaffold107 SAMTools SNP 618310 618310 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 618340 618340 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 618550 618550 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold107 SAMTools SNP 618854 618854 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold107 SAMTools SNP 638634 638634 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C195:76 scaffold107 SAMTools SNP 656221 656221 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold107 SAMTools SNP 657889 657889 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold107 SAMTools SNP 657948 657948 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 659259 659259 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.022%2C1.7e-12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C63:33 scaffold107 SAMTools SNP 659676 659676 78.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold107 SAMTools SNP 659916 659916 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C69%2C0:99 scaffold107 SAMTools SNP 663671 663671 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 666037 666037 43.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold107 SAMTools SNP 666682 666682 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44.4%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C80:74 scaffold107 SAMTools SNP 667083 667083 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C12%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C37:40 scaffold107 SAMTools SNP 667325 667325 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C39%2C0:72 scaffold107 SAMTools SNP 667494 667494 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold107 SAMTools SNP 667550 667550 14.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold107 SAMTools SNP 667696 667696 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold107 SAMTools SNP 692387 692387 21.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold107 SAMTools SNP 692398 692398 85.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C5%2C0:9 scaffold107 SAMTools SNP 693269 693269 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.48%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold107 SAMTools SNP 693976 693976 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 694000 694000 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 850423 850423 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold107 SAMTools SNP 850719 850719 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 888450 888450 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold107 SAMTools SNP 917751 917751 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold107 SAMTools SNP 917834 917834 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold107 SAMTools SNP 927626 927626 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold107 SAMTools SNP 936896 936896 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-3.42%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C27:30 scaffold107 SAMTools SNP 936956 936956 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 937119 937119 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold107 SAMTools SNP 937169 937169 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold107 SAMTools SNP 940929 940929 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 950788 950788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 952411 952411 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold107 SAMTools SNP 952447 952447 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold107 SAMTools SNP 959337 959337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold107 SAMTools SNP 960329 960329 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold107 SAMTools SNP 960711 960711 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C206:40 scaffold107 SAMTools SNP 960944 960944 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C37%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold107 SAMTools SNP 961941 961941 69.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold107 SAMTools SNP 962848 962848 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold107 SAMTools SNP 962921 962921 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold107 SAMTools SNP 963080 963080 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C56%2C25%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-05%2C0.32%2C0.43%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 963095 963095 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C39%2C2%2C51%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1e-16%2C1%2C0.27%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold107 SAMTools SNP 963167 963167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold107 SAMTools SNP 963227 963227 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C44%3BMQ%3D49%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold107 SAMTools SNP 964168 964168 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.018%2C0.18%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold107 SAMTools SNP 966323 966323 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C58%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold107 SAMTools SNP 974898 974898 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.035%2C0.00066%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold107 SAMTools SNP 975378 975378 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold107 SAMTools SNP 975427 975427 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold107 SAMTools SNP 975455 975455 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 975608 975608 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 975662 975662 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C0.018%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 977396 977396 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 978087 978087 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C1%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.11%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold107 SAMTools SNP 979162 979162 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold107 SAMTools SNP 979218 979218 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold107 SAMTools SNP 979324 979324 3.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold107 SAMTools SNP 979705 979705 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold107 SAMTools SNP 979717 979717 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C30%2C0:55 scaffold107 SAMTools SNP 979941 979941 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 979993 979993 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold107 SAMTools SNP 980472 980472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold107 SAMTools SNP 983695 983695 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 983726 983726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold107 SAMTools SNP 983872 983872 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold107 SAMTools SNP 983884 983884 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C21%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.57%2C0.16%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold107 SAMTools SNP 985383 985383 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold107 SAMTools SNP 996666 996666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold107 SAMTools SNP 998614 998614 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold107 SAMTools SNP 999048 999048 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold107 SAMTools SNP 999081 999081 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold107 SAMTools SNP 999200 999200 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C12%3BMQ%3D43%3BFQ%3D80%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C107:99 scaffold107 SAMTools SNP 1001205 1001205 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold107 SAMTools SNP 1001802 1001802 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold107 SAMTools SNP 1001811 1001811 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold107 SAMTools SNP 1003476 1003476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold107 SAMTools SNP 1004048 1004048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold107 SAMTools SNP 1004076 1004076 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold107 SAMTools SNP 1004424 1004424 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold107 SAMTools SNP 1005618 1005618 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold107 SAMTools SNP 1005632 1005632 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold107 SAMTools SNP 1005688 1005688 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold107 SAMTools SNP 1009302 1009302 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.32%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold107 SAMTools SNP 1009341 1009341 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold107 SAMTools SNP 1009526 1009526 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold107 SAMTools SNP 1009539 1009539 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.031%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold107 SAMTools SNP 1009943 1009943 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold107 SAMTools SNP 1010434 1010434 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold107 SAMTools SNP 1010904 1010904 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C117%2C0%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 1015309 1015309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold107 SAMTools SNP 1015387 1015387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 1019379 1019379 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold107 SAMTools SNP 1019439 1019439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C16%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold107 SAMTools SNP 1020033 1020033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C72%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold107 SAMTools SNP 1020057 1020057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C44%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold107 SAMTools SNP 1020310 1020310 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold107 SAMTools SNP 1020313 1020313 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold107 SAMTools SNP 1021820 1021820 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold107 SAMTools SNP 1025547 1025547 39.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold107 SAMTools SNP 1026013 1026013 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold107 SAMTools SNP 1026321 1026321 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold107 SAMTools SNP 1026678 1026678 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C251:99 scaffold107 SAMTools SNP 1026702 1026702 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold107 SAMTools SNP 1026717 1026717 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C146:99 scaffold107 SAMTools SNP 1026789 1026789 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.64%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold107 SAMTools SNP 1027227 1027227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold107 SAMTools SNP 1027228 1027228 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold107 SAMTools SNP 1027271 1027271 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold107 SAMTools SNP 1027276 1027276 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1070 SAMTools SNP 11620 11620 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1070 SAMTools SNP 11658 11658 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1070 SAMTools SNP 12512 12512 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1070 SAMTools SNP 24511 24511 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1070 SAMTools SNP 25518 25518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1070 SAMTools SNP 25625 25625 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1070 SAMTools SNP 26170 26170 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.56%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1070 SAMTools SNP 26720 26720 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.28%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1070 SAMTools SNP 26724 26724 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1070 SAMTools SNP 27475 27475 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1070 SAMTools SNP 27487 27487 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1070 SAMTools SNP 29269 29269 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1070 SAMTools SNP 37342 37342 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1070 SAMTools SNP 37791 37791 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1070 SAMTools SNP 37808 37808 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.087%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1070 SAMTools SNP 42375 42375 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C42%2C0:62 scaffold1070 SAMTools SNP 42452 42452 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C15%2C1%3BMQ%3D49%3BFQ%3D206%3BPV4%3D0.26%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C236:99 scaffold1070 SAMTools SNP 47850 47850 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1070 SAMTools SNP 47873 47873 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C1%3BMQ%3D49%3BFQ%3D-94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold1070 SAMTools SNP 50353 50353 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1070 SAMTools SNP 50366 50366 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1070 SAMTools SNP 51178 51178 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1070 SAMTools SNP 55844 55844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1070 SAMTools SNP 55867 55867 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1070 SAMTools SNP 57990 57990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1070 SAMTools SNP 58822 58822 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C6%2C86%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.041%2C7e-151%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1070 SAMTools SNP 58919 58919 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C106%2C0%2C34%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.59%2C8.7e-12%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1070 SAMTools SNP 59802 59802 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C39%2C31%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1070 SAMTools SNP 67174 67174 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00049%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1070 SAMTools SNP 70009 70009 223 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1070 SAMTools SNP 70075 70075 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1070 SAMTools SNP 73411 73411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1070 SAMTools SNP 74924 74924 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C242:80 scaffold1070 SAMTools SNP 80136 80136 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D15%2C2%2C7%2C5%3BMQ%3D21%3BFQ%3D3.55%3BPV4%3D0.092%2C0.3%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C28:31 scaffold1070 SAMTools SNP 81423 81423 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C22%2C0%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C1.6e-33%2C0.0036%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C248:44 scaffold1070 SAMTools SNP 81449 81449 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C28%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.6e-42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C236:47 scaffold1070 SAMTools SNP 85226 85226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C206%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1070 SAMTools SNP 87694 87694 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold1070 SAMTools SNP 87873 87873 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1070 SAMTools SNP 88261 88261 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C49%2C0:95 scaffold1070 SAMTools SNP 88279 88279 103 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C229:99 scaffold1070 SAMTools SNP 89638 89638 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1070 SAMTools SNP 89725 89725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1070 SAMTools SNP 89904 89904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.033%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1070 SAMTools SNP 89925 89925 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.55%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1075 SAMTools SNP 360 360 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1075 SAMTools SNP 2959 2959 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1075 SAMTools SNP 3747 3747 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 3812 3812 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 5110 5110 4.11 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1075 SAMTools SNP 47027 47027 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1075 SAMTools SNP 80210 80210 6.79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1075 SAMTools SNP 80222 80222 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold1075 SAMTools SNP 92745 92745 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1075 SAMTools SNP 92772 92772 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1075 SAMTools SNP 96139 96139 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 96557 96557 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1075 SAMTools SNP 96569 96569 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1075 SAMTools SNP 98463 98463 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1075 SAMTools SNP 99016 99016 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1075 SAMTools SNP 99046 99046 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 99049 99049 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 99944 99944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1075 SAMTools SNP 105741 105741 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1077 SAMTools SNP 1220 1220 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 1256 1256 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 39112 39112 44.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1077 SAMTools SNP 39576 39576 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 40282 40282 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1077 SAMTools SNP 40302 40302 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 40380 40380 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1077 SAMTools SNP 40407 40407 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1077 SAMTools SNP 40961 40961 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 42200 42200 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.41%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C212:95 scaffold1077 SAMTools SNP 42862 42862 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C88:60 scaffold1077 SAMTools SNP 42889 42889 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1077 SAMTools SNP 42944 42944 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C247:99 scaffold1077 SAMTools SNP 43408 43408 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.56%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C216:99 scaffold1077 SAMTools SNP 43876 43876 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1077 SAMTools SNP 43877 43877 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1077 SAMTools SNP 44031 44031 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1077 SAMTools SNP 56545 56545 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 56696 56696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1191%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D463%2C93%2C606%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-13%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1077 SAMTools SNP 56723 56723 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D752%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C248%2C129%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1077 SAMTools SNP 56738 56738 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1297%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C654%2C35%2C102%3BMQ%3D50%3BFQ%3D39%3BPV4%3D9.6e-09%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1077 SAMTools SNP 57988 57988 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1365%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D293%2C424%2C222%2C284%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C3.4e-154%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1077 SAMTools SNP 58155 58155 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C68%2C32%2C35%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.65%2C5.1e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1077 SAMTools SNP 59018 59018 165 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C63%2C0:99 scaffold1077 SAMTools SNP 137805 137805 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 138821 138821 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D35%3BFQ%3D6.56%3BPV4%3D0.4%2C7.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold1077 SAMTools SNP 198787 198787 32.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1077 SAMTools SNP 198910 198910 91.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold1077 SAMTools SNP 216727 216727 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1077 SAMTools SNP 216749 216749 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1077 SAMTools SNP 217051 217051 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C34%2C12%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C5.1e-43%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C88:91 scaffold1077 SAMTools SNP 217302 217302 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C39%2C0:74 scaffold1077 SAMTools SNP 217551 217551 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold1077 SAMTools SNP 222565 222565 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C13%3BMQ%3D49%3BFQ%3D7.8%3BPV4%3D1%2C1.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C247:34 scaffold1077 SAMTools SNP 222920 222920 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.41%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C237:99 scaffold1077 SAMTools SNP 225551 225551 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1077 SAMTools SNP 225578 225578 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 226037 226037 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C60:63 scaffold1077 SAMTools SNP 227391 227391 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 227855 227855 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 228141 228141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 228273 228273 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C23:26 scaffold1077 SAMTools SNP 228879 228879 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.41%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1077 SAMTools SNP 228915 228915 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 229092 229092 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1077 SAMTools SNP 229114 229114 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1077 SAMTools SNP 231093 231093 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1077 SAMTools SNP 232085 232085 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1077 SAMTools SNP 232317 232317 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1077 SAMTools SNP 267329 267329 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1077 SAMTools SNP 267691 267691 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 268075 268075 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 268076 268076 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 270259 270259 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C12%3BMQ%3D49%3BFQ%3D-6.96%3BPV4%3D0.49%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold1077 SAMTools SNP 270791 270791 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1077 SAMTools SNP 270938 270938 17.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold1077 SAMTools SNP 279050 279050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1077 SAMTools SNP 280187 280187 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4992%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1857%2C138%2C179%2C2818%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1077 SAMTools SNP 286207 286207 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1077 SAMTools SNP 303104 303104 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1077 SAMTools SNP 347289 347289 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1077 SAMTools SNP 348392 348392 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1077 SAMTools SNP 348790 348790 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.46%2C4.1e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C119:66 scaffold1077 SAMTools SNP 349986 349986 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold1077 SAMTools SNP 350239 350239 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.00057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C211:33 scaffold1077 SAMTools SNP 373670 373670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 376409 376409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1077 SAMTools SNP 376466 376466 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1077 SAMTools SNP 376511 376511 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1077 SAMTools SNP 377066 377066 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 377090 377090 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 382792 382792 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1077 SAMTools SNP 387404 387404 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1077 SAMTools SNP 436706 436706 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1077 SAMTools SNP 466252 466252 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1077 SAMTools SNP 466429 466429 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C59:33 scaffold1077 SAMTools SNP 467168 467168 5.47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-7.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C21:26 scaffold1077 SAMTools SNP 467396 467396 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1077 SAMTools SNP 512582 512582 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1077 SAMTools SNP 512592 512592 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1077 SAMTools SNP 513314 513314 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1077 SAMTools SNP 514207 514207 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C13%2C0%3BMQ%3D37%3BFQ%3D100%3BPV4%3D0.16%2C0.32%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C192:99 scaffold1077 SAMTools SNP 515671 515671 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold1077 SAMTools SNP 515801 515801 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D34%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold1077 SAMTools SNP 517096 517096 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C2%2C28%3BMQ%3D41%3BFQ%3D133%3BPV4%3D4.3e-06%2C6.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C160:99 scaffold1077 SAMTools SNP 517425 517425 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C26%3BMQ%3D46%3BFQ%3D23%3BPV4%3D1%2C2.9e-38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C227:53 scaffold1078 SAMTools SNP 39 39 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1078 SAMTools SNP 59 59 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1078 SAMTools SNP 477 477 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C21%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.081%2C2.7e-37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1078 SAMTools SNP 523 523 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1078 SAMTools SNP 625 625 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C197:37 scaffold1078 SAMTools SNP 648 648 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.22%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C239:99 scaffold1078 SAMTools SNP 748 748 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C29%2C4%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1078 SAMTools SNP 2356 2356 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C158:99 scaffold1078 SAMTools SNP 2373 2373 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C204:99 scaffold1078 SAMTools SNP 2793 2793 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.3e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C74:48 scaffold1078 SAMTools SNP 2996 2996 40.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1078 SAMTools SNP 3474 3474 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C57%2C0:99 scaffold1078 SAMTools SNP 7971 7971 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1078 SAMTools SNP 9344 9344 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1078 SAMTools SNP 9356 9356 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1078 SAMTools SNP 10332 10332 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C16%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1078 SAMTools SNP 10343 10343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1078 SAMTools SNP 10419 10419 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1078 SAMTools SNP 10452 10452 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1078 SAMTools SNP 11400 11400 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1078 SAMTools SNP 12509 12509 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1078 SAMTools SNP 12518 12518 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1078 SAMTools SNP 12533 12533 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1078 SAMTools SNP 14433 14433 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1078 SAMTools SNP 14723 14723 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1078 SAMTools SNP 14750 14750 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1078 SAMTools SNP 17029 17029 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 17794 17794 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 17816 17816 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 17925 17925 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 18513 18513 54.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1078 SAMTools SNP 19208 19208 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1078 SAMTools SNP 19449 19449 69.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold1078 SAMTools SNP 38319 38319 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C36%2C0:69 scaffold1078 SAMTools SNP 38340 38340 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1078 SAMTools SNP 41416 41416 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C19%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1078 SAMTools SNP 41532 41532 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 43654 43654 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 43673 43673 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1078 SAMTools SNP 43708 43708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1078 SAMTools SNP 44143 44143 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1078 SAMTools SNP 44183 44183 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C84:87 scaffold1078 SAMTools SNP 44215 44215 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1078 SAMTools SNP 45013 45013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 45386 45386 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1078 SAMTools SNP 45497 45497 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1078 SAMTools SNP 45503 45503 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1078 SAMTools SNP 46060 46060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1078 SAMTools SNP 48272 48272 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1078 SAMTools SNP 50665 50665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C5.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1078 SAMTools SNP 50814 50814 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1078 SAMTools SNP 51446 51446 33.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1080 SAMTools SNP 3500 3500 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 4352 4352 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 4380 4380 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 4414 4414 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 27248 27248 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1080 SAMTools SNP 33700 33700 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1080 SAMTools SNP 34655 34655 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1080 SAMTools SNP 35712 35712 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C143:99 scaffold1080 SAMTools SNP 36093 36093 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C187:99 scaffold1080 SAMTools SNP 36160 36160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 36596 36596 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1080 SAMTools SNP 36604 36604 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1080 SAMTools SNP 36719 36719 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1080 SAMTools SNP 36915 36915 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.19%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1080 SAMTools SNP 36993 36993 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C0.015%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold1080 SAMTools SNP 37186 37186 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1080 SAMTools SNP 37204 37204 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1080 SAMTools SNP 37780 37780 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C24%2C0:45 scaffold1080 SAMTools SNP 38024 38024 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold1080 SAMTools SNP 38027 38027 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold1080 SAMTools SNP 38034 38034 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold1080 SAMTools SNP 38039 38039 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1080 SAMTools SNP 38452 38452 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1080 SAMTools SNP 38608 38608 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1080 SAMTools SNP 38646 38646 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1080 SAMTools SNP 39517 39517 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1080 SAMTools SNP 40447 40447 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1080 SAMTools SNP 40699 40699 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 40706 40706 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 40940 40940 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold1080 SAMTools SNP 41104 41104 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 41307 41307 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1080 SAMTools SNP 48302 48302 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1080 SAMTools SNP 48322 48322 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1080 SAMTools SNP 50118 50118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1080 SAMTools SNP 50923 50923 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1080 SAMTools SNP 50951 50951 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.068%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1080 SAMTools SNP 50956 50956 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C6%2C15%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.15%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1080 SAMTools SNP 51465 51465 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1080 SAMTools SNP 51481 51481 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1080 SAMTools SNP 53169 53169 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1080 SAMTools SNP 53170 53170 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C21:24 scaffold1080 SAMTools SNP 53173 53173 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1080 SAMTools SNP 53691 53691 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 54114 54114 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.04%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1080 SAMTools SNP 54427 54427 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C25%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1080 SAMTools SNP 54829 54829 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.35%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1080 SAMTools SNP 55747 55747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1080 SAMTools SNP 56164 56164 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1080 SAMTools SNP 56233 56233 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1080 SAMTools SNP 56408 56408 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1080 SAMTools SNP 56469 56469 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1080 SAMTools SNP 56636 56636 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1080 SAMTools SNP 56637 56637 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1080 SAMTools SNP 57111 57111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1080 SAMTools SNP 57207 57207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1080 SAMTools SNP 57895 57895 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1080 SAMTools SNP 57900 57900 87 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C21%2C116%2C0%2C113:16 scaffold1080 SAMTools SNP 58087 58087 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1080 SAMTools SNP 58476 58476 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C63%2C0:99 scaffold1080 SAMTools SNP 58539 58539 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1080 SAMTools SNP 58575 58575 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C44%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C2e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 58596 58596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C43%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 58912 58912 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C49%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 59103 59103 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C239:99 scaffold1080 SAMTools SNP 62619 62619 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 62914 62914 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.48%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1080 SAMTools SNP 63351 63351 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1080 SAMTools SNP 63622 63622 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1080 SAMTools SNP 77009 77009 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 79308 79308 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 79646 79646 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1080 SAMTools SNP 86897 86897 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1080 SAMTools SNP 87035 87035 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1080 SAMTools SNP 87477 87477 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 87504 87504 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 109341 109341 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C1%2C18%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.00031%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1080 SAMTools SNP 109350 109350 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1080 SAMTools SNP 109359 109359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1080 SAMTools SNP 114657 114657 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1080 SAMTools SNP 114684 114684 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C30%2C71%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-12%2C1%2C1%2C3.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 114744 114744 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C25%2C33%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-06%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 115155 115155 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C92%2C51%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1080 SAMTools SNP 115224 115224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C153%2C6%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C8.9e-06%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 115476 115476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1080 SAMTools SNP 115534 115534 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 115776 115776 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1080 SAMTools SNP 115782 115782 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.33%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1080 SAMTools SNP 115800 115800 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 116428 116428 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.35%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1080 SAMTools SNP 116464 116464 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1080 SAMTools SNP 118219 118219 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C16%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0038%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1080 SAMTools SNP 119071 119071 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C17%2C79%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 119584 119584 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1246%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C488%2C53%2C505%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 119611 119611 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1247%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C599%2C41%2C360%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 119707 119707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1080 SAMTools SNP 119973 119973 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C132%2C60%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 120090 120090 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C23%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 120956 120956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C10%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1080 SAMTools SNP 121007 121007 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1080 SAMTools SNP 121418 121418 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 121444 121444 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-142;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C39:99 scaffold1080 SAMTools SNP 121460 121460 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1080 SAMTools SNP 125137 125137 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1080 SAMTools SNP 125415 125415 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1080 SAMTools SNP 125427 125427 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1080 SAMTools SNP 165000 165000 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1080 SAMTools SNP 221088 221088 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1080 SAMTools SNP 221411 221411 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1080 SAMTools SNP 221419 221419 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1080 SAMTools SNP 267040 267040 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1080 SAMTools SNP 267375 267375 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 267457 267457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 279684 279684 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C45%2C0:87 scaffold1080 SAMTools SNP 279778 279778 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1080 SAMTools SNP 279786 279786 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1080 SAMTools SNP 279848 279848 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C46%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 282647 282647 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C41%2C44%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.031%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 288283 288283 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1080 SAMTools SNP 288388 288388 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C113%2C7%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C8.1e-184%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 288698 288698 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C2.3e-22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 288937 288937 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.18%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C236:90 scaffold1080 SAMTools SNP 289009 289009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1080 SAMTools SNP 289994 289994 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold1080 SAMTools SNP 290032 290032 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1080 SAMTools SNP 290451 290451 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D45%2C3%2C36%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.26%2C1.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1080 SAMTools SNP 290664 290664 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1080 SAMTools SNP 291121 291121 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1080 SAMTools SNP 291142 291142 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1080 SAMTools SNP 291846 291846 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1080 SAMTools SNP 291881 291881 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.033%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C189:83 scaffold1080 SAMTools SNP 291921 291921 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1080 SAMTools SNP 292059 292059 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1080 SAMTools SNP 296267 296267 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1080 SAMTools SNP 296472 296472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C22%2C3%3BMQ%3D46%3BFQ%3D94%3BPV4%3D0.061%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1080 SAMTools SNP 296564 296564 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.00072%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C80:33 scaffold1080 SAMTools SNP 296567 296567 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C7.3e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold1080 SAMTools SNP 296832 296832 9.49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1080 SAMTools SNP 296846 296846 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1080 SAMTools SNP 296891 296891 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C37%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.23%2C1.5e-14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C201:99 scaffold1080 SAMTools SNP 296901 296901 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C1%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C238:99 scaffold1080 SAMTools SNP 296987 296987 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1080 SAMTools SNP 297091 297091 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1080 SAMTools SNP 297293 297293 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C156%2C33%2C218%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1e-217%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 297377 297377 96 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C16%2C38%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.83%2C6.4e-103%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1080 SAMTools SNP 297709 297709 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C60%2C15%2C85%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0011%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold1080 SAMTools SNP 298175 298175 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C33%2C0:63 scaffold1080 SAMTools SNP 309192 309192 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C36%2C0:69 scaffold1080 SAMTools SNP 312307 312307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C28%2C29%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 312367 312367 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C31%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D0.42%2C0.26%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1080 SAMTools SNP 312419 312419 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C50%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1080 SAMTools SNP 313484 313484 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C15%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.23%2C0.021%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1080 SAMTools SNP 318202 318202 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold1080 SAMTools SNP 318490 318490 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold1080 SAMTools SNP 321466 321466 80.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold1080 SAMTools SNP 322089 322089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C32%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1080 SAMTools SNP 322676 322676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 322715 322715 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D9.1e-07%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1080 SAMTools SNP 323657 323657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 323666 323666 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 324005 324005 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1080 SAMTools SNP 324074 324074 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.25%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1080 SAMTools SNP 324625 324625 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0168%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D30%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1080 SAMTools SNP 324658 324658 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1081 SAMTools SNP 68414 68414 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1081 SAMTools SNP 75244 75244 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1081 SAMTools SNP 76103 76103 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1081 SAMTools SNP 76569 76569 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1081 SAMTools SNP 76578 76578 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1081 SAMTools SNP 76611 76611 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1081 SAMTools SNP 76671 76671 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1081 SAMTools SNP 77014 77014 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1081 SAMTools SNP 78453 78453 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1081 SAMTools SNP 79905 79905 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1081 SAMTools SNP 79915 79915 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1081 SAMTools SNP 79959 79959 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1081 SAMTools SNP 80466 80466 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1081 SAMTools SNP 80692 80692 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1081 SAMTools SNP 84110 84110 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold1081 SAMTools SNP 84457 84457 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1081 SAMTools SNP 85636 85636 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1081 SAMTools SNP 85648 85648 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1081 SAMTools SNP 86499 86499 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1081 SAMTools SNP 88422 88422 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1081 SAMTools SNP 88437 88437 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1081 SAMTools SNP 88476 88476 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1081 SAMTools SNP 94389 94389 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1081 SAMTools SNP 100849 100849 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1081 SAMTools SNP 100892 100892 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1081 SAMTools SNP 101737 101737 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1081 SAMTools SNP 101805 101805 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1081 SAMTools SNP 103220 103220 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold1081 SAMTools SNP 103247 103247 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1081 SAMTools SNP 104410 104410 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1081 SAMTools SNP 108236 108236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1081 SAMTools SNP 108268 108268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1081 SAMTools SNP 109954 109954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1081 SAMTools SNP 156011 156011 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1081 SAMTools SNP 156034 156034 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1081 SAMTools SNP 162453 162453 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1081 SAMTools SNP 162479 162479 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1081 SAMTools SNP 166857 166857 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C0.0045%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold1081 SAMTools SNP 168603 168603 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1083 SAMTools SNP 6469 6469 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1083 SAMTools SNP 6478 6478 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 6534 6534 124 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1083 SAMTools SNP 6545 6545 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1083 SAMTools SNP 7571 7571 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1083 SAMTools SNP 16593 16593 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 17608 17608 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1083 SAMTools SNP 17673 17673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.06%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 18278 18278 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C132:81 scaffold1083 SAMTools SNP 18323 18323 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.2%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1083 SAMTools SNP 18356 18356 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.3%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1083 SAMTools SNP 18357 18357 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.3%2C0.035%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1083 SAMTools SNP 22549 22549 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1083 SAMTools SNP 22558 22558 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1083 SAMTools SNP 22566 22566 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.09%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1083 SAMTools SNP 22911 22911 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1083 SAMTools SNP 23194 23194 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 24077 24077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.1e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 24176 24176 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 24182 24182 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 25540 25540 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1083 SAMTools SNP 25560 25560 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.1%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1083 SAMTools SNP 25820 25820 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1083 SAMTools SNP 26221 26221 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C0:57 scaffold1083 SAMTools SNP 26793 26793 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 26843 26843 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1083 SAMTools SNP 27070 27070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1083 SAMTools SNP 27081 27081 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1083 SAMTools SNP 28008 28008 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1083 SAMTools SNP 28478 28478 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 29113 29113 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.053%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C223:46 scaffold1083 SAMTools SNP 30225 30225 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1083 SAMTools SNP 30243 30243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1083 SAMTools SNP 31173 31173 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1083 SAMTools SNP 31908 31908 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1083 SAMTools SNP 32642 32642 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1083 SAMTools SNP 33111 33111 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C216:94 scaffold1083 SAMTools SNP 33849 33849 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.042%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1083 SAMTools SNP 33852 33852 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.11%2C0.0081%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1083 SAMTools SNP 34053 34053 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C169:99 scaffold1083 SAMTools SNP 34263 34263 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.25%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1083 SAMTools SNP 35023 35023 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1083 SAMTools SNP 35579 35579 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 36240 36240 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C190:28 scaffold1083 SAMTools SNP 36930 36930 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 36960 36960 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1083 SAMTools SNP 37402 37402 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1083 SAMTools SNP 37462 37462 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1083 SAMTools SNP 37941 37941 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 38251 38251 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C129:33 scaffold1083 SAMTools SNP 39722 39722 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 39881 39881 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 40247 40247 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 40294 40294 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C169:85 scaffold1083 SAMTools SNP 47452 47452 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1083 SAMTools SNP 47477 47477 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1083 SAMTools SNP 48383 48383 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1083 SAMTools SNP 49613 49613 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1083 SAMTools SNP 50057 50057 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1083 SAMTools SNP 50072 50072 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1083 SAMTools SNP 50116 50116 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold1083 SAMTools SNP 50225 50225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 51780 51780 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 52242 52242 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 52851 52851 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold1083 SAMTools SNP 52898 52898 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C214:99 scaffold1083 SAMTools SNP 52918 52918 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.51%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C232:99 scaffold1083 SAMTools SNP 53423 53423 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 53438 53438 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1083 SAMTools SNP 61449 61449 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 61814 61814 64.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold1083 SAMTools SNP 61979 61979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1083 SAMTools SNP 62980 62980 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.19%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C236:99 scaffold1083 SAMTools SNP 63006 63006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1083 SAMTools SNP 63009 63009 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1083 SAMTools SNP 65139 65139 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1083 SAMTools SNP 65163 65163 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1083 SAMTools SNP 70603 70603 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 75923 75923 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C12%2C18%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.81%2C2.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1083 SAMTools SNP 76190 76190 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C36%2C0:69 scaffold1083 SAMTools SNP 76223 76223 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold1083 SAMTools SNP 76397 76397 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1083 SAMTools SNP 76736 76736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1083 SAMTools SNP 76758 76758 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 76766 76766 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 77218 77218 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C28%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 77269 77269 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.13%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1083 SAMTools SNP 77296 77296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.0022%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 77508 77508 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0088%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1083 SAMTools SNP 77525 77525 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 77579 77579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1083 SAMTools SNP 78326 78326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1083 SAMTools SNP 78597 78597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 79164 79164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 79696 79696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1083 SAMTools SNP 79763 79763 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.46%2C1%2C6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1083 SAMTools SNP 86120 86120 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1083 SAMTools SNP 86744 86744 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C87%2C0:99 scaffold1083 SAMTools SNP 86837 86837 164 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C132%2C0%2C199%2C118%2C196:99 scaffold1083 SAMTools SNP 88363 88363 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1083 SAMTools SNP 94510 94510 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C38%3BMQ%3D48%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C169%2C0:99 scaffold1083 SAMTools SNP 94656 94656 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C45%2C0:87 scaffold1083 SAMTools SNP 94918 94918 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C108%2C0:99 scaffold1083 SAMTools SNP 95297 95297 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C217:30 scaffold1083 SAMTools SNP 99630 99630 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 100191 100191 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1083 SAMTools SNP 100256 100256 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.2%2C9.3e-05%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1083 SAMTools SNP 104881 104881 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1083 SAMTools SNP 105240 105240 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1083 SAMTools SNP 110095 110095 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0025%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C74:53 scaffold1083 SAMTools SNP 110256 110256 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 110962 110962 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 111109 111109 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.7e-07%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 111238 111238 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.44%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C182:36 scaffold1083 SAMTools SNP 111426 111426 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.66%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1083 SAMTools SNP 111538 111538 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C36%2C0:69 scaffold1083 SAMTools SNP 111716 111716 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C11%2C14%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0072%2C3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1083 SAMTools SNP 113401 113401 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 113409 113409 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 113440 113440 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1083 SAMTools SNP 113939 113939 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1083 SAMTools SNP 113948 113948 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.54%2C8.3e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1083 SAMTools SNP 113960 113960 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C18%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1083 SAMTools SNP 115255 115255 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 115305 115305 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 116366 116366 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1083 SAMTools SNP 116459 116459 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 116464 116464 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C88:43 scaffold1083 SAMTools SNP 116483 116483 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 117248 117248 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 117257 117257 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 117299 117299 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1083 SAMTools SNP 117628 117628 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.6%2C1.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1083 SAMTools SNP 117631 117631 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 120365 120365 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 123237 123237 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1083 SAMTools SNP 123522 123522 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1083 SAMTools SNP 123600 123600 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.52%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C193:56 scaffold1083 SAMTools SNP 123689 123689 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D41.8%3BPV4%3D0.43%2C0.00031%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C69:72 scaffold1083 SAMTools SNP 124111 124111 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1083 SAMTools SNP 124150 124150 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 124847 124847 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1083 SAMTools SNP 124856 124856 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1083 SAMTools SNP 124900 124900 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C82:85 scaffold1083 SAMTools SNP 124947 124947 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1083 SAMTools SNP 124973 124973 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1083 SAMTools SNP 125378 125378 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1083 SAMTools SNP 125864 125864 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 125951 125951 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1083 SAMTools SNP 126448 126448 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 126460 126460 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 126483 126483 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 126553 126553 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C41:44 scaffold1083 SAMTools SNP 127279 127279 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1083 SAMTools SNP 128045 128045 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.074%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1083 SAMTools SNP 128358 128358 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C207:46 scaffold1083 SAMTools SNP 128780 128780 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1083 SAMTools SNP 128981 128981 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 132312 132312 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1083 SAMTools SNP 132316 132316 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1083 SAMTools SNP 132712 132712 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 134122 134122 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1083 SAMTools SNP 135661 135661 37.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1083 SAMTools SNP 137999 137999 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 138018 138018 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C6.9e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C70:73 scaffold1083 SAMTools SNP 139868 139868 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C56%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 139911 139911 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D181%2C6%2C211%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1e-185%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 140069 140069 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C321%2C8%2C255%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C4.5e-214%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 149700 149700 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1083 SAMTools SNP 152782 152782 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold1083 SAMTools SNP 153795 153795 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C189:99 scaffold1083 SAMTools SNP 153798 153798 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold1083 SAMTools SNP 153825 153825 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C184:98 scaffold1083 SAMTools SNP 154855 154855 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1083 SAMTools SNP 156542 156542 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold1083 SAMTools SNP 156556 156556 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C222:99 scaffold1083 SAMTools SNP 169932 169932 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1083 SAMTools SNP 169968 169968 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1083 SAMTools SNP 170168 170168 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D624%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1083 SAMTools SNP 170285 170285 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1083 SAMTools SNP 176091 176091 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 176112 176112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 176193 176193 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1083 SAMTools SNP 176482 176482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C5%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1083 SAMTools SNP 177145 177145 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C34%2C27%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 177154 177154 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 177190 177190 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 177920 177920 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1083 SAMTools SNP 178388 178388 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1083 SAMTools SNP 178394 178394 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1083 SAMTools SNP 178475 178475 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1083 SAMTools SNP 178514 178514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1083 SAMTools SNP 179428 179428 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 181173 181173 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1083 SAMTools SNP 181181 181181 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1083 SAMTools SNP 181187 181187 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 181310 181310 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1083 SAMTools SNP 181340 181340 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1083 SAMTools SNP 181364 181364 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.095%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C132:99 scaffold1083 SAMTools SNP 182945 182945 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C63%2C1%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 182969 182969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C63%2C2%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 183401 183401 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C5%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C169%2C0:99 scaffold1083 SAMTools SNP 183428 183428 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1083 SAMTools SNP 183979 183979 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C20%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 183993 183993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 184543 184543 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C54%2C131%2C27%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.099%2C9.4e-239%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1083 SAMTools SNP 184567 184567 110 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C63%2C0%2C135%2C42%2C132:99 scaffold1083 SAMTools SNP 184717 184717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C49%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1083 SAMTools SNP 184736 184736 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 185509 185509 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C8%2C1%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.25%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1083 SAMTools SNP 185627 185627 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C20:23 scaffold1083 SAMTools SNP 187359 187359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C30%2C80%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C0.15%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 187689 187689 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C216%2C45%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 188889 188889 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1083 SAMTools SNP 206467 206467 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C45%2C0:87 scaffold1083 SAMTools SNP 206563 206563 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C0.057%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C218:59 scaffold1083 SAMTools SNP 206578 206578 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.087%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1083 SAMTools SNP 207058 207058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C61%2C8%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 207073 207073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C71%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 209539 209539 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1083 SAMTools SNP 210352 210352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold1083 SAMTools SNP 211392 211392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 211437 211437 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C17%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.45%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1083 SAMTools SNP 211446 211446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1083 SAMTools SNP 211449 211449 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 212424 212424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C88%2C2%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-11%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 216051 216051 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C65%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C0:99 scaffold1083 SAMTools SNP 216361 216361 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold1083 SAMTools SNP 216467 216467 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1083 SAMTools SNP 217977 217977 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C212:99 scaffold1083 SAMTools SNP 218792 218792 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1083 SAMTools SNP 221606 221606 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 221627 221627 82.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold1083 SAMTools SNP 221782 221782 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold1083 SAMTools SNP 222522 222522 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1083 SAMTools SNP 223175 223175 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1083 SAMTools SNP 223199 223199 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1083 SAMTools SNP 223676 223676 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 223690 223690 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.19%2C0.026%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1083 SAMTools SNP 224160 224160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1083 SAMTools SNP 228663 228663 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C399%2C23%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.3e-08%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 230016 230016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D774%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C605%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 230232 230232 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D634%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C244%2C197%2C0%3BMQ%3D49%3BFQ%3D152%3BPV4%3D7.8e-54%2C4.9e-107%2C1%2C6.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1083 SAMTools SNP 230241 230241 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C201%2C73%2C50%3BMQ%3D48%3BFQ%3D197%3BPV4%3D0.013%2C1%2C2.7e-30%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1083 SAMTools SNP 230290 230290 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1160%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C577%2C425%2C4%3BMQ%3D50%3BFQ%3D189%3BPV4%3D2.8e-181%2C1%2C0.00029%2C6.3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1083 SAMTools SNP 230745 230745 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1379%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C415%2C62%2C775%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-13%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 231081 231081 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D867%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C97%2C543%2C44%3BMQ%3D50%3BFQ%3D-108%3BPV4%3D2.4e-76%2C1%2C1%2C3.3e-128;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1083 SAMTools SNP 231390 231390 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D730%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C484%2C14%2C159%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.21%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1083 SAMTools SNP 231414 231414 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C163%2C39%2C301%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 231456 231456 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C284%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 231570 231570 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C53%2C13%2C63%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.64%2C7.1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1083 SAMTools SNP 237565 237565 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1083 SAMTools SNP 257472 257472 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 266445 266445 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1083 SAMTools SNP 266538 266538 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1083 SAMTools SNP 266664 266664 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C14%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.46%2C1.4e-37%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1083 SAMTools SNP 266922 266922 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C6%2C14%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.02%2C2e-27%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C239:80 scaffold1083 SAMTools SNP 267112 267112 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C57%2C0:99 scaffold1083 SAMTools SNP 273381 273381 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1083 SAMTools SNP 273791 273791 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1083 SAMTools SNP 278765 278765 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1083 SAMTools SNP 278804 278804 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 278810 278810 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 280390 280390 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1083 SAMTools SNP 280462 280462 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 280955 280955 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 281247 281247 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1083 SAMTools SNP 281563 281563 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1083 SAMTools SNP 281575 281575 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1083 SAMTools SNP 282463 282463 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold1083 SAMTools SNP 282908 282908 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1083 SAMTools SNP 282950 282950 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1083 SAMTools SNP 284876 284876 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 287758 287758 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1083 SAMTools SNP 297801 297801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 301115 301115 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 301337 301337 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1083 SAMTools SNP 305197 305197 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1083 SAMTools SNP 305239 305239 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1083 SAMTools SNP 305812 305812 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 309673 309673 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C245:99 scaffold1083 SAMTools SNP 309909 309909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold1083 SAMTools SNP 309923 309923 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.64%2C0.066%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1083 SAMTools SNP 309938 309938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1083 SAMTools SNP 310843 310843 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.12%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1083 SAMTools SNP 312495 312495 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1083 SAMTools SNP 312967 312967 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1083 SAMTools SNP 313156 313156 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 317405 317405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 317423 317423 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C14%2C13%2C5%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.31%2C0.00013%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1083 SAMTools SNP 317501 317501 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C67%2C8%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1083 SAMTools SNP 317768 317768 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1083 SAMTools SNP 317803 317803 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1083 SAMTools SNP 317853 317853 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 317992 317992 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 318019 318019 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1083 SAMTools SNP 318037 318037 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.28%2C0.17%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1083 SAMTools SNP 318459 318459 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 318465 318465 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 318781 318781 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C0%2C19%3BMQ%3D50%3BFQ%3D204%3BPV4%3D2.3e-05%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1083 SAMTools SNP 318898 318898 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 348587 348587 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 349048 349048 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 364157 364157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 368313 368313 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1083 SAMTools SNP 368620 368620 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C0.16%2C1%2C2.2e-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold1083 SAMTools SNP 370649 370649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D565%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C298%2C48%2C160%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C7e-126%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 370703 370703 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D737%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C97%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 370963 370963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1083 SAMTools SNP 371409 371409 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 371413 371413 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 373473 373473 6.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1083 SAMTools SNP 373676 373676 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C16%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0055%2C2.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C234:43 scaffold1083 SAMTools SNP 374522 374522 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold1083 SAMTools SNP 374816 374816 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D36.5%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C64:66 scaffold1083 SAMTools SNP 374867 374867 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1083 SAMTools SNP 374940 374940 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1083 SAMTools SNP 374966 374966 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C45%2C0:87 scaffold1083 SAMTools SNP 375206 375206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1083 SAMTools SNP 375692 375692 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C5.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1083 SAMTools SNP 375819 375819 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C87%2C0:99 scaffold1083 SAMTools SNP 377094 377094 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 382098 382098 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1083 SAMTools SNP 382405 382405 207 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C212:99 scaffold1083 SAMTools SNP 383376 383376 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1083 SAMTools SNP 383797 383797 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C12%2C46%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.015%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 384643 384643 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C34%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 384665 384665 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C16%2C45%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 385310 385310 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1083 SAMTools SNP 385791 385791 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C61%2C1%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 386509 386509 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C45%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C148%2C0:99 scaffold1083 SAMTools SNP 386557 386557 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1083 SAMTools SNP 386574 386574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1083 SAMTools SNP 388105 388105 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.08%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1083 SAMTools SNP 388116 388116 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1083 SAMTools SNP 388135 388135 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C69%2C0:99 scaffold1083 SAMTools SNP 388231 388231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 388503 388503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C38%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1083 SAMTools SNP 389022 389022 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0039%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1083 SAMTools SNP 389076 389076 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C7%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1083 SAMTools SNP 389106 389106 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1083 SAMTools SNP 389829 389829 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C1%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1083 SAMTools SNP 389835 389835 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C78%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1083 SAMTools SNP 390198 390198 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.53%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1083 SAMTools SNP 390237 390237 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C209:99 scaffold1083 SAMTools SNP 390244 390244 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C251:99 scaffold1083 SAMTools SNP 392401 392401 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1083 SAMTools SNP 393779 393779 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1083 SAMTools SNP 395842 395842 6.17 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1083 SAMTools SNP 395847 395847 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold1083 SAMTools SNP 396187 396187 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00011%2C0.19%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold1083 SAMTools SNP 396192 396192 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1083 SAMTools SNP 396251 396251 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C27%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1083 SAMTools SNP 396332 396332 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 396333 396333 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1083 SAMTools SNP 397111 397111 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C3%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1083 SAMTools SNP 411302 411302 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 411357 411357 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1083 SAMTools SNP 417312 417312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 417344 417344 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 417570 417570 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1083 SAMTools SNP 417619 417619 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 417631 417631 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1083 SAMTools SNP 418186 418186 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 418199 418199 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1083 SAMTools SNP 422397 422397 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1083 SAMTools SNP 423022 423022 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1083 SAMTools SNP 449387 449387 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1083 SAMTools SNP 449882 449882 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1083 SAMTools SNP 457750 457750 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 720 720 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1084 SAMTools SNP 828 828 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D69.9%3BPV4%3D0.029%2C0.095%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C97:99 scaffold1084 SAMTools SNP 1054 1054 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1084 SAMTools SNP 1292 1292 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1084 SAMTools SNP 1331 1331 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1084 SAMTools SNP 2585 2585 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1084 SAMTools SNP 3124 3124 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1084 SAMTools SNP 3130 3130 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.026%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1084 SAMTools SNP 4110 4110 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 4131 4131 69.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1084 SAMTools SNP 5517 5517 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1084 SAMTools SNP 8157 8157 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1084 SAMTools SNP 8163 8163 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 9509 9509 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 9522 9522 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 9855 9855 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 9858 9858 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 10147 10147 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1084 SAMTools SNP 10298 10298 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1084 SAMTools SNP 10346 10346 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1084 SAMTools SNP 10557 10557 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1084 SAMTools SNP 10584 10584 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1084 SAMTools SNP 10614 10614 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 13084 13084 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1084 SAMTools SNP 13659 13659 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1084 SAMTools SNP 13773 13773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1084 SAMTools SNP 14185 14185 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C225:88 scaffold1084 SAMTools SNP 14210 14210 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.085%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1084 SAMTools SNP 14493 14493 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1084 SAMTools SNP 14634 14634 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1084 SAMTools SNP 14681 14681 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1084 SAMTools SNP 15668 15668 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold1084 SAMTools SNP 15707 15707 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C4.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1084 SAMTools SNP 15870 15870 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1084 SAMTools SNP 16327 16327 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1084 SAMTools SNP 16333 16333 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1084 SAMTools SNP 16348 16348 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1084 SAMTools SNP 16355 16355 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1084 SAMTools SNP 16356 16356 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1084 SAMTools SNP 16441 16441 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1084 SAMTools SNP 16871 16871 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C52:55 scaffold1084 SAMTools SNP 19377 19377 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1084 SAMTools SNP 19436 19436 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C0.054%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C177:62 scaffold1084 SAMTools SNP 19876 19876 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C0.1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C132:67 scaffold1084 SAMTools SNP 19877 19877 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C0.1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C132:67 scaffold1084 SAMTools SNP 19904 19904 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold1084 SAMTools SNP 20654 20654 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1084 SAMTools SNP 20786 20786 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1084 SAMTools SNP 20919 20919 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1084 SAMTools SNP 20982 20982 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.54%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1084 SAMTools SNP 21051 21051 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.018%2C0.19%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C248:82 scaffold1084 SAMTools SNP 21090 21090 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold1084 SAMTools SNP 21623 21623 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1084 SAMTools SNP 23255 23255 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C48%2C0:93 scaffold1084 SAMTools SNP 26720 26720 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 36204 36204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C56%2C12%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.19%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold1084 SAMTools SNP 36216 36216 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.56%2C5.9e-06%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1084 SAMTools SNP 36238 36238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1084 SAMTools SNP 36534 36534 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 36559 36559 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C23%2C2%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.016%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1084 SAMTools SNP 37261 37261 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1084 SAMTools SNP 37427 37427 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C104%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1084 SAMTools SNP 37465 37465 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C43%2C40%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 37670 37670 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C58%2C38%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.00014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 38636 38636 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D28%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.31%2C8e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1084 SAMTools SNP 38757 38757 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C69%2C0:99 scaffold1084 SAMTools SNP 38775 38775 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1084 SAMTools SNP 39018 39018 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C254:99 scaffold1084 SAMTools SNP 39078 39078 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C6%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0053%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1084 SAMTools SNP 39938 39938 64.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1084 SAMTools SNP 39965 39965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C321%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1084 SAMTools SNP 40379 40379 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 40697 40697 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C19%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 40878 40878 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold1084 SAMTools SNP 40939 40939 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1084 SAMTools SNP 40988 40988 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C30%2C0:57 scaffold1084 SAMTools SNP 40999 40999 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C4.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C20:23 scaffold1084 SAMTools SNP 41353 41353 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1084 SAMTools SNP 45023 45023 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 48001 48001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C42%2C147%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 51348 51348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C115%2C13%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.019%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 51378 51378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C6%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1084 SAMTools SNP 54181 54181 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1084 SAMTools SNP 54194 54194 70.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold1084 SAMTools SNP 89048 89048 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1084 SAMTools SNP 93706 93706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 93715 93715 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1084 SAMTools SNP 93734 93734 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1084 SAMTools SNP 100965 100965 54.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1084 SAMTools SNP 113675 113675 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1084 SAMTools SNP 118534 118534 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C11%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1084 SAMTools SNP 118956 118956 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C36%2C0:69 scaffold1084 SAMTools SNP 139305 139305 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1084 SAMTools SNP 139336 139336 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 139470 139470 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 142988 142988 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1084 SAMTools SNP 157070 157070 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1084 SAMTools SNP 157084 157084 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1084 SAMTools SNP 157654 157654 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1084 SAMTools SNP 165106 165106 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 165123 165123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 172347 172347 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 180214 180214 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 180424 180424 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.11%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C127:70 scaffold1084 SAMTools SNP 180436 180436 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold1084 SAMTools SNP 180443 180443 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1084 SAMTools SNP 181441 181441 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1084 SAMTools SNP 181697 181697 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold1084 SAMTools SNP 184540 184540 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1084 SAMTools SNP 203451 203451 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 204275 204275 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 207895 207895 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1084 SAMTools SNP 208186 208186 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1084 SAMTools SNP 210797 210797 10.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold1084 SAMTools SNP 239079 239079 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1084 SAMTools SNP 241262 241262 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1086 SAMTools SNP 2836 2836 77.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold1086 SAMTools SNP 22640 22640 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 26953 26953 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C178%2C0:99 scaffold1086 SAMTools SNP 27200 27200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C73%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1086 SAMTools SNP 27209 27209 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C67%2C2%2C10%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.62%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1086 SAMTools SNP 27562 27562 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C0%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1086 SAMTools SNP 27645 27645 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.011%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C190:99 scaffold1086 SAMTools SNP 29614 29614 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C120%2C0:99 scaffold1086 SAMTools SNP 29807 29807 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1086 SAMTools SNP 46114 46114 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1086 SAMTools SNP 46120 46120 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1086 SAMTools SNP 46138 46138 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1086 SAMTools SNP 46231 46231 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.16%2C0.42%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1086 SAMTools SNP 46480 46480 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.097%2C0.017%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1086 SAMTools SNP 46715 46715 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 47268 47268 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C244:99 scaffold1086 SAMTools SNP 47293 47293 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1086 SAMTools SNP 47305 47305 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1086 SAMTools SNP 67224 67224 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1086 SAMTools SNP 73156 73156 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 76209 76209 25.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1086 SAMTools SNP 76864 76864 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1086 SAMTools SNP 77349 77349 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1086 SAMTools SNP 79906 79906 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 85290 85290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 85499 85499 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1086 SAMTools SNP 85567 85567 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold1086 SAMTools SNP 85970 85970 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1086 SAMTools SNP 86125 86125 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C63:66 scaffold1086 SAMTools SNP 86143 86143 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C188:74 scaffold1086 SAMTools SNP 87051 87051 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1086 SAMTools SNP 87474 87474 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 89784 89784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1086 SAMTools SNP 89799 89799 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold1086 SAMTools SNP 92250 92250 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D48%3BFQ%3D125%3BPV4%3D0.45%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold1086 SAMTools SNP 93600 93600 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D26%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C33%2C0:51 scaffold1086 SAMTools SNP 94194 94194 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 94231 94231 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C26%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C2.1e-65%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1086 SAMTools SNP 94323 94323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 94327 94327 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 95315 95315 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1086 SAMTools SNP 95370 95370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1086 SAMTools SNP 95790 95790 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1086 SAMTools SNP 95995 95995 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1086 SAMTools SNP 98122 98122 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1086 SAMTools SNP 98318 98318 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.53%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C207:99 scaffold1086 SAMTools SNP 98423 98423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1086 SAMTools SNP 98903 98903 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1086 SAMTools SNP 99167 99167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1086 SAMTools SNP 99647 99647 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 100382 100382 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1086 SAMTools SNP 109130 109130 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1086 SAMTools SNP 109405 109405 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C35%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C3.2e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1086 SAMTools SNP 110242 110242 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C11%2C9%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1086 SAMTools SNP 110356 110356 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C16%2C46%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.5%2C7.9e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1086 SAMTools SNP 110789 110789 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C32%2C29%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.33%2C1e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1086 SAMTools SNP 112092 112092 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 112119 112119 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1086 SAMTools SNP 112176 112176 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 112420 112420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 112441 112441 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C48%2C0%2C16%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.017%2C1.6e-07%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1086 SAMTools SNP 114029 114029 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.58%2C1.9e-14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1086 SAMTools SNP 114083 114083 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C5%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.72%2C6.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1086 SAMTools SNP 114628 114628 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.015%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1086 SAMTools SNP 115086 115086 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.35%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C242:99 scaffold1086 SAMTools SNP 115092 115092 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.12%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C230:36 scaffold1086 SAMTools SNP 115408 115408 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 115732 115732 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1086 SAMTools SNP 115808 115808 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1086 SAMTools SNP 116137 116137 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.42%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1086 SAMTools SNP 117372 117372 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C16%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1086 SAMTools SNP 117423 117423 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 117516 117516 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 117540 117540 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 117933 117933 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C6%2C84%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C2.3e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1086 SAMTools SNP 118278 118278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C144%2C7%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 118284 118284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C130%2C9%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C2.8e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 118410 118410 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C10%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1086 SAMTools SNP 120516 120516 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 120651 120651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1086 SAMTools SNP 121048 121048 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1086 SAMTools SNP 121060 121060 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1086 SAMTools SNP 121557 121557 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C33%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 121622 121622 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C21%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1086 SAMTools SNP 121926 121926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 122359 122359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1086 SAMTools SNP 122864 122864 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1086 SAMTools SNP 123038 123038 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 124498 124498 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1086 SAMTools SNP 124594 124594 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C7%2C17%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.78%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 124606 124606 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C11%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.22%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 125423 125423 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C13%3BMQ%3D45%3BFQ%3D187%3BPV4%3D0.0096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1086 SAMTools SNP 125967 125967 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C46%3BMQ%3D27%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1086 SAMTools SNP 125990 125990 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C7%2C12%3BMQ%3D35%3BFQ%3D212%3BPV4%3D1%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C242:99 scaffold1086 SAMTools SNP 126735 126735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C50%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 127110 127110 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 127454 127454 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.051%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1086 SAMTools SNP 127460 127460 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C12%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.6%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C154:99 scaffold1086 SAMTools SNP 127463 127463 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.0049%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1086 SAMTools SNP 128384 128384 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C5%3BMQ%3D50%3BFQ%3D-102%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1086 SAMTools SNP 128399 128399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1086 SAMTools SNP 128690 128690 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C33%2C0:62 scaffold1086 SAMTools SNP 130468 130468 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1086 SAMTools SNP 130805 130805 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1086 SAMTools SNP 130987 130987 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1086 SAMTools SNP 131313 131313 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1086 SAMTools SNP 131316 131316 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1086 SAMTools SNP 131508 131508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C35%2C34%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C7.5e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 131592 131592 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C55%2C2%2C24%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.6e-36%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1086 SAMTools SNP 132340 132340 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C0%2C46%2C7%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00043%2C1.5e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1086 SAMTools SNP 132740 132740 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C96%2C0:99 scaffold1086 SAMTools SNP 133454 133454 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C227:33 scaffold1086 SAMTools SNP 136616 136616 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C133%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 136652 136652 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.15%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C206:69 scaffold1086 SAMTools SNP 136877 136877 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C124:69 scaffold1086 SAMTools SNP 136922 136922 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1086 SAMTools SNP 137931 137931 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C48%2C0:93 scaffold1086 SAMTools SNP 145619 145619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.1e-10%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 147905 147905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1086 SAMTools SNP 147930 147930 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C149:99 scaffold1086 SAMTools SNP 147947 147947 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1086 SAMTools SNP 150711 150711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1086 SAMTools SNP 150878 150878 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1086 SAMTools SNP 155133 155133 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.5%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1086 SAMTools SNP 155400 155400 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.042%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1086 SAMTools SNP 155753 155753 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 155807 155807 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00013%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C134:80 scaffold1086 SAMTools SNP 155858 155858 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C29:32 scaffold1086 SAMTools SNP 155903 155903 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1086 SAMTools SNP 158178 158178 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 158642 158642 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C3%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 159924 159924 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1086 SAMTools SNP 160053 160053 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C58%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C3.3e-80%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1086 SAMTools SNP 162068 162068 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1086 SAMTools SNP 162151 162151 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1086 SAMTools SNP 165709 165709 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1086 SAMTools SNP 166051 166051 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.59%2C0.31%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C224:99 scaffold1086 SAMTools SNP 166353 166353 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.013%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1086 SAMTools SNP 166419 166419 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1086 SAMTools SNP 166937 166937 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0093%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1086 SAMTools SNP 168304 168304 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1086 SAMTools SNP 174336 174336 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C18%2C56%2C2%3BMQ%3D46%3BFQ%3D200%3BPV4%3D0.041%2C0.048%2C0.099%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1086 SAMTools SNP 174412 174412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C198%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 174978 174978 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C119%2C1%2C72%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.38%2C0.018%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 175265 175265 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 175311 175311 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 175524 175524 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1086 SAMTools SNP 175531 175531 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.03%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C246:82 scaffold1086 SAMTools SNP 175597 175597 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1086 SAMTools SNP 176673 176673 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C99:99 scaffold1086 SAMTools SNP 176739 176739 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1086 SAMTools SNP 176974 176974 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1086 SAMTools SNP 177032 177032 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1086 SAMTools SNP 177419 177419 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 177552 177552 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C18%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold1086 SAMTools SNP 177859 177859 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1086 SAMTools SNP 177868 177868 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1086 SAMTools SNP 177899 177899 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1086 SAMTools SNP 179748 179748 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1086 SAMTools SNP 179768 179768 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C20%3BMQ%3D50%3BFQ%3D209%3BPV4%3D5e-05%2C0.092%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1086 SAMTools SNP 186333 186333 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D45.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C73:76 scaffold1086 SAMTools SNP 186650 186650 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 209925 209925 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 210620 210620 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 211312 211312 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 211336 211336 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1086 SAMTools SNP 211401 211401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C64%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.49%2C0.0059%2C1%2C1.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1086 SAMTools SNP 211678 211678 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C70%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1086 SAMTools SNP 212337 212337 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C9%2C16%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C5.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1086 SAMTools SNP 212401 212401 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C29%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1086 SAMTools SNP 213385 213385 32.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold1086 SAMTools SNP 249323 249323 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1086 SAMTools SNP 250143 250143 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C8%3BMQ%3D49%3BFQ%3D-31%3BPV4%3D1%2C1.4e-12%2C0.41%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C4%2C0:7 scaffold1086 SAMTools SNP 250322 250322 5.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1086 SAMTools SNP 250488 250488 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.084%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C113:41 scaffold1086 SAMTools SNP 259306 259306 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C223:99 scaffold1086 SAMTools SNP 259841 259841 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.001%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C217:99 scaffold1086 SAMTools SNP 259858 259858 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 259933 259933 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.12%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1086 SAMTools SNP 259946 259946 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1086 SAMTools SNP 261900 261900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 267377 267377 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1086 SAMTools SNP 268167 268167 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C24%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1086 SAMTools SNP 268222 268222 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1086 SAMTools SNP 278752 278752 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1086 SAMTools SNP 287778 287778 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold1086 SAMTools SNP 287996 287996 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 288056 288056 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 293482 293482 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 316222 316222 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 316521 316521 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1086 SAMTools SNP 316663 316663 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1086 SAMTools SNP 317200 317200 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1086 SAMTools SNP 317576 317576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 317717 317717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1086 SAMTools SNP 317891 317891 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D47%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C195:99 scaffold1086 SAMTools SNP 317906 317906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 336723 336723 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1086 SAMTools SNP 336741 336741 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1086 SAMTools SNP 337018 337018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 337019 337019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 337043 337043 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 337316 337316 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 337544 337544 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1086 SAMTools SNP 337925 337925 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C3%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C0.47%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1086 SAMTools SNP 337973 337973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 338063 338063 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C54%2C1%2C48%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1.7e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1086 SAMTools SNP 338066 338066 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C48%2C2%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 338331 338331 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C0%2C23%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.31%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1086 SAMTools SNP 338349 338349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1086 SAMTools SNP 338364 338364 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 338520 338520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1086 SAMTools SNP 338538 338538 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1086 SAMTools SNP 338871 338871 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold1086 SAMTools SNP 339276 339276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1086 SAMTools SNP 339288 339288 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1086 SAMTools SNP 345885 345885 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0068%2C3.4e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1086 SAMTools SNP 351657 351657 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C33%2C0:63 scaffold1086 SAMTools SNP 351787 351787 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.55%2C0.069%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1086 SAMTools SNP 351814 351814 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1086 SAMTools SNP 351826 351826 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold1086 SAMTools SNP 351841 351841 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.9e-05%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1086 SAMTools SNP 352677 352677 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1086 SAMTools SNP 353410 353410 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C29:32 scaffold1086 SAMTools SNP 354203 354203 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C8.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 354260 354260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.09%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 354283 354283 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 355663 355663 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C4%3BMQ%3D48%3BFQ%3D204%3BPV4%3D0.35%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1086 SAMTools SNP 355705 355705 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C15%3BMQ%3D49%3BFQ%3D176%3BPV4%3D0.42%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C241:99 scaffold1086 SAMTools SNP 356265 356265 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1086 SAMTools SNP 356359 356359 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 356394 356394 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1086 SAMTools SNP 356754 356754 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1086 SAMTools SNP 356781 356781 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.27%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C186:99 scaffold1086 SAMTools SNP 356820 356820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1086 SAMTools SNP 357337 357337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.21%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 357370 357370 209 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C13%2C252%2C0%2C249:39 scaffold1086 SAMTools SNP 357376 357376 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1086 SAMTools SNP 359206 359206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1086 SAMTools SNP 362664 362664 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C236:99 scaffold1086 SAMTools SNP 362676 362676 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.49%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1086 SAMTools SNP 366049 366049 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1086 SAMTools SNP 366105 366105 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1086 SAMTools SNP 368954 368954 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1086 SAMTools SNP 370641 370641 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 370665 370665 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1086 SAMTools SNP 370674 370674 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1086 SAMTools SNP 385036 385036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1086 SAMTools SNP 385455 385455 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1086 SAMTools SNP 385479 385479 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1086 SAMTools SNP 387653 387653 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1086 SAMTools SNP 387662 387662 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1086 SAMTools SNP 394840 394840 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1086 SAMTools SNP 394869 394869 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1086 SAMTools SNP 394996 394996 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.28%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1086 SAMTools SNP 395359 395359 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1086 SAMTools SNP 404020 404020 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1086 SAMTools SNP 415783 415783 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 415866 415866 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1086 SAMTools SNP 420738 420738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C57%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.47%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 421214 421214 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1086 SAMTools SNP 428497 428497 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C0%2C157%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 439097 439097 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 441825 441825 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C27%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 444695 444695 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 444722 444722 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C1%2C13%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1086 SAMTools SNP 444731 444731 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C39%2C0:75 scaffold1086 SAMTools SNP 444746 444746 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8.1e-07%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1086 SAMTools SNP 444810 444810 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.044%2C2.6e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1086 SAMTools SNP 444854 444854 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold1086 SAMTools SNP 445567 445567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 445687 445687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C2%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1086 SAMTools SNP 446510 446510 38.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1086 SAMTools SNP 447561 447561 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C63%2C0:99 scaffold1086 SAMTools SNP 449402 449402 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C32:35 scaffold1086 SAMTools SNP 449459 449459 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D30.8%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C58:61 scaffold1086 SAMTools SNP 449680 449680 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1086 SAMTools SNP 449686 449686 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1086 SAMTools SNP 450208 450208 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 450592 450592 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 450667 450667 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1086 SAMTools SNP 451102 451102 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.17%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold1086 SAMTools SNP 453147 453147 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C8%2C8%3BMQ%3D36%3BFQ%3D124%3BPV4%3D0.34%2C0.046%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1086 SAMTools SNP 453171 453171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C9%2C13%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.75%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 453207 453207 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C10%2C9%3BMQ%3D35%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C213:99 scaffold1086 SAMTools SNP 453648 453648 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C8%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 454057 454057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 454199 454199 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1086 SAMTools SNP 454206 454206 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1086 SAMTools SNP 462338 462338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C7%2C45%2C5%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.54%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 462353 462353 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C11%3BMQ%3D45%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1086 SAMTools SNP 462404 462404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C31%2C20%2C38%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.14%2C0.075%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 466060 466060 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C31%2C30%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 466111 466111 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C25%2C10%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.76%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1086 SAMTools SNP 466255 466255 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C65%2C0%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 466601 466601 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1086 SAMTools SNP 467212 467212 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C152:36 scaffold1086 SAMTools SNP 467432 467432 25.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1086 SAMTools SNP 467671 467671 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1086 SAMTools SNP 467906 467906 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1086 SAMTools SNP 467918 467918 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1086 SAMTools SNP 469255 469255 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1086 SAMTools SNP 469767 469767 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1086 SAMTools SNP 469783 469783 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1086 SAMTools SNP 470195 470195 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 470427 470427 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 470462 470462 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold1086 SAMTools SNP 470533 470533 75.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold1086 SAMTools SNP 470593 470593 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1086 SAMTools SNP 471673 471673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C3.7e-09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1086 SAMTools SNP 471770 471770 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C36%2C0:69 scaffold1086 SAMTools SNP 471833 471833 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1086 SAMTools SNP 471926 471926 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1086 SAMTools SNP 473265 473265 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1086 SAMTools SNP 473288 473288 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 473300 473300 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1086 SAMTools SNP 473328 473328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 473999 473999 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1086 SAMTools SNP 474623 474623 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1086 SAMTools SNP 474624 474624 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1086 SAMTools SNP 474627 474627 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1086 SAMTools SNP 474647 474647 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1086 SAMTools SNP 475313 475313 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1086 SAMTools SNP 475315 475315 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1086 SAMTools SNP 475319 475319 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1086 SAMTools SNP 475328 475328 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1086 SAMTools SNP 475339 475339 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0019%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold1086 SAMTools SNP 475615 475615 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1086 SAMTools SNP 479521 479521 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C217:72 scaffold1086 SAMTools SNP 479997 479997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1086 SAMTools SNP 480014 480014 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1086 SAMTools SNP 480069 480069 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C7.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C197:44 scaffold1086 SAMTools SNP 480572 480572 222 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0%2C234%2C4%2C231:99 scaffold1086 SAMTools SNP 481081 481081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C33%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1086 SAMTools SNP 481915 481915 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C34%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1086 SAMTools SNP 482234 482234 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C71%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C217%2C0:99 scaffold1086 SAMTools SNP 482331 482331 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 482332 482332 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 485452 485452 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1086 SAMTools SNP 485464 485464 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1086 SAMTools SNP 485962 485962 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0302%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D44%3BFQ%3D-11.3%3BPV4%3D1%2C0.012%2C0.31%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C16:19 scaffold1086 SAMTools SNP 486247 486247 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D863%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C34%2C6%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D0.31%2C0.0015%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C51%2C0:99 scaffold1086 SAMTools SNP 486349 486349 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D566%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1086 SAMTools SNP 486571 486571 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1086 SAMTools SNP 486625 486625 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1086 SAMTools SNP 486956 486956 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.00021%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 487387 487387 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C4%2C12%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0012%2C7.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1086 SAMTools SNP 487432 487432 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C12%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.00064%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1086 SAMTools SNP 487471 487471 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0088%2C0.0012%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C85:88 scaffold1086 SAMTools SNP 487489 487489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1086 SAMTools SNP 487513 487513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1086 SAMTools SNP 487778 487778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C12%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1086 SAMTools SNP 488278 488278 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 488575 488575 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1086 SAMTools SNP 488584 488584 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C8%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 488658 488658 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C122%2C64%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D2.5e-19%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C46:49 scaffold1086 SAMTools SNP 488960 488960 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 489070 489070 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1086 SAMTools SNP 489107 489107 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 489303 489303 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1086 SAMTools SNP 489375 489375 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1086 SAMTools SNP 489557 489557 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 489653 489653 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C2%2C28%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.57%2C2.3e-46%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1086 SAMTools SNP 489748 489748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1086 SAMTools SNP 489926 489926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 489974 489974 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C49%2C13%2C11%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.5%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1086 SAMTools SNP 490064 490064 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C46%2C122%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 490828 490828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C18%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 490976 490976 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C18%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 491334 491334 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1086 SAMTools SNP 491335 491335 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.6%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C41:43 scaffold1086 SAMTools SNP 491341 491341 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.2%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C148:42 scaffold1086 SAMTools SNP 491781 491781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 492054 492054 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1086 SAMTools SNP 492138 492138 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1086 SAMTools SNP 492444 492444 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C54%2C1%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 492867 492867 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D691%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C122%2C185%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 493020 493020 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C127%2C203%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 493184 493184 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C23%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D4.3e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1086 SAMTools SNP 493486 493486 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 493488 493488 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C28%2C14%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1086 SAMTools SNP 494053 494053 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C52%2C39%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.0049%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 494068 494068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C187%2C126%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1086 SAMTools SNP 494491 494491 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C94%2C11%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 494507 494507 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C75%2C14%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 495414 495414 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C17%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C243:99 scaffold1086 SAMTools SNP 496027 496027 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.43%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1086 SAMTools SNP 496039 496039 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C0.16%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1086 SAMTools SNP 496439 496439 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1086 SAMTools SNP 496731 496731 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 497757 497757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 498215 498215 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.029%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1086 SAMTools SNP 499948 499948 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C247:99 scaffold1086 SAMTools SNP 501410 501410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 501488 501488 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1086 SAMTools SNP 502760 502760 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1086 SAMTools SNP 502764 502764 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1086 SAMTools SNP 502819 502819 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.003%2C1%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C117:99 scaffold1086 SAMTools SNP 502890 502890 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C30%2C0:57 scaffold1086 SAMTools SNP 503006 503006 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1086 SAMTools SNP 503075 503075 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C66%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C211%2C0:99 scaffold1086 SAMTools SNP 503432 503432 33.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1086 SAMTools SNP 503600 503600 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.34%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1086 SAMTools SNP 503689 503689 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1086 SAMTools SNP 503720 503720 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C19%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C2.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1086 SAMTools SNP 503804 503804 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D3.54%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C28:31 scaffold1086 SAMTools SNP 503891 503891 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1086 SAMTools SNP 504092 504092 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.22%2C8.1e-15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1086 SAMTools SNP 504678 504678 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1086 SAMTools SNP 504683 504683 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1086 SAMTools SNP 504707 504707 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C149:99 scaffold1086 SAMTools SNP 504713 504713 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.9e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1086 SAMTools SNP 504866 504866 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C13%2C11%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.79%2C9.4e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1086 SAMTools SNP 505065 505065 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1086 SAMTools SNP 505785 505785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1086 SAMTools SNP 507676 507676 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C8%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.054%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1086 SAMTools SNP 507680 507680 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C17%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1086 SAMTools SNP 507800 507800 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C14%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C8.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C247:99 scaffold1086 SAMTools SNP 507820 507820 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C21%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C221:47 scaffold1086 SAMTools SNP 507837 507837 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1086 SAMTools SNP 580240 580240 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C0.0023%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1086 SAMTools SNP 585912 585912 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1086 SAMTools SNP 596073 596073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1086 SAMTools SNP 596393 596393 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C16%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1086 SAMTools SNP 596726 596726 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C42%2C0:81 scaffold1086 SAMTools SNP 598996 598996 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold1086 SAMTools SNP 599025 599025 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1086 SAMTools SNP 599192 599192 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1086 SAMTools SNP 599342 599342 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 599370 599370 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1086 SAMTools SNP 602162 602162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D301%2C348%2C49%2C233%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-18%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 617134 617134 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1086 SAMTools SNP 622537 622537 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C168:74 scaffold1086 SAMTools SNP 622661 622661 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1086 SAMTools SNP 625995 625995 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0024%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1086 SAMTools SNP 627171 627171 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.00038%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C240:99 scaffold1086 SAMTools SNP 627199 627199 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0052%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.089%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C202:30 scaffold1086 SAMTools SNP 627798 627798 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1086 SAMTools SNP 628117 628117 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1086 SAMTools SNP 628135 628135 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1086 SAMTools SNP 630774 630774 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.091%2C4.8e-08%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1086 SAMTools SNP 659930 659930 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1086 SAMTools SNP 666560 666560 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1086 SAMTools SNP 688759 688759 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1086 SAMTools SNP 689251 689251 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C6%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1086 SAMTools SNP 689715 689715 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C84%2C0:99 scaffold1086 SAMTools SNP 689860 689860 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C14%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C7.7e-15%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1086 SAMTools SNP 690002 690002 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C124:33 scaffold1086 SAMTools SNP 690196 690196 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C36%2C0:69 scaffold1086 SAMTools SNP 690912 690912 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C42%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C151%2C0:99 scaffold1086 SAMTools SNP 691125 691125 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C84%2C0:99 scaffold1086 SAMTools SNP 691284 691284 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C9%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1086 SAMTools SNP 691580 691580 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C67%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C214%2C0:99 scaffold1086 SAMTools SNP 691832 691832 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1086 SAMTools SNP 692367 692367 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1086 SAMTools SNP 693969 693969 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold1086 SAMTools SNP 694153 694153 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1086 SAMTools SNP 694185 694185 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1086 SAMTools SNP 706033 706033 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1086 SAMTools SNP 706102 706102 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0021%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C35:38 scaffold1086 SAMTools SNP 712835 712835 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C99%2C0:99 scaffold1086 SAMTools SNP 712944 712944 193 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C3%2C20%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0012%2C2.2e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1086 SAMTools SNP 713111 713111 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.53%2C0.15%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1086 SAMTools SNP 713127 713127 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1086 SAMTools SNP 714764 714764 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1086 SAMTools SNP 714834 714834 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C30%2C0:57 scaffold1086 SAMTools SNP 714842 714842 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1086 SAMTools SNP 715035 715035 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1086 SAMTools SNP 717335 717335 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1088 SAMTools SNP 313 313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 1512 1512 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C124:84 scaffold1088 SAMTools SNP 1650 1650 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 2134 2134 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1088 SAMTools SNP 3118 3118 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1088 SAMTools SNP 9967 9967 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1088 SAMTools SNP 10042 10042 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1088 SAMTools SNP 10048 10048 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1088 SAMTools SNP 11316 11316 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1088 SAMTools SNP 18926 18926 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1088 SAMTools SNP 18967 18967 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1088 SAMTools SNP 19656 19656 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1088 SAMTools SNP 20405 20405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1088 SAMTools SNP 20438 20438 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1088 SAMTools SNP 21159 21159 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1088 SAMTools SNP 21615 21615 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1088 SAMTools SNP 21813 21813 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 23258 23258 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1088 SAMTools SNP 26883 26883 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 27067 27067 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C42%2C0:65 scaffold1088 SAMTools SNP 27112 27112 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C255%2C0:99 scaffold1088 SAMTools SNP 27301 27301 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1088 SAMTools SNP 27694 27694 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C90%2C0:99 scaffold1088 SAMTools SNP 28015 28015 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C30%2C0:57 scaffold1088 SAMTools SNP 30337 30337 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C129%2C0:99 scaffold1088 SAMTools SNP 31483 31483 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C35%2C48%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D4.2e-11%2C1.3e-15%2C1%2C6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1088 SAMTools SNP 31502 31502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C37%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1088 SAMTools SNP 31972 31972 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1088 SAMTools SNP 31975 31975 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1088 SAMTools SNP 32382 32382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1088 SAMTools SNP 33437 33437 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1088 SAMTools SNP 33458 33458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1088 SAMTools SNP 33801 33801 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C76%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1088 SAMTools SNP 33836 33836 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C42%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1088 SAMTools SNP 33861 33861 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1088 SAMTools SNP 34300 34300 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1088 SAMTools SNP 34336 34336 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C20%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1088 SAMTools SNP 34943 34943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C33%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1088 SAMTools SNP 38446 38446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1088 SAMTools SNP 47131 47131 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C244:49 scaffold1088 SAMTools SNP 47188 47188 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1088 SAMTools SNP 47620 47620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1088 SAMTools SNP 47833 47833 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 50422 50422 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold1088 SAMTools SNP 50557 50557 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 51011 51011 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1088 SAMTools SNP 51084 51084 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1088 SAMTools SNP 51139 51139 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1088 SAMTools SNP 53459 53459 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.52%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C158:44 scaffold1088 SAMTools SNP 53468 53468 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1088 SAMTools SNP 53570 53570 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1088 SAMTools SNP 68010 68010 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C8%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.17%2C4.9e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1088 SAMTools SNP 71016 71016 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1088 SAMTools SNP 71124 71124 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C129:57 scaffold1088 SAMTools SNP 72069 72069 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1089 SAMTools SNP 3664 3664 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold109 SAMTools SNP 204412 204412 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 204433 204433 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 204854 204854 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.14%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 206072 206072 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C98%2C51%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.082%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 209100 209100 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C30%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 210001 210001 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 211469 211469 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold109 SAMTools SNP 224264 224264 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 231975 231975 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.4e-62%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold109 SAMTools SNP 233677 233677 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold109 SAMTools SNP 233682 233682 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold109 SAMTools SNP 237043 237043 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.044%2C0.002%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold109 SAMTools SNP 237044 237044 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0023%2C8.4e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C253:99 scaffold109 SAMTools SNP 241652 241652 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C6.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold109 SAMTools SNP 241733 241733 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold109 SAMTools SNP 256527 256527 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold109 SAMTools SNP 263482 263482 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 285621 285621 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C245:54 scaffold109 SAMTools SNP 285622 285622 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold109 SAMTools SNP 286424 286424 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C31%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 303947 303947 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold109 SAMTools SNP 332371 332371 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold109 SAMTools SNP 352115 352115 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C102:40 scaffold109 SAMTools SNP 352127 352127 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0051%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold109 SAMTools SNP 383203 383203 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold109 SAMTools SNP 383209 383209 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold109 SAMTools SNP 384203 384203 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold109 SAMTools SNP 384784 384784 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.056%2C0.18%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold109 SAMTools SNP 384811 384811 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.34%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold109 SAMTools SNP 385190 385190 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold109 SAMTools SNP 385412 385412 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold109 SAMTools SNP 385438 385438 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold109 SAMTools SNP 386733 386733 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold109 SAMTools SNP 386778 386778 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold109 SAMTools SNP 386807 386807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold109 SAMTools SNP 386826 386826 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 387233 387233 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.47%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold109 SAMTools SNP 387330 387330 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold109 SAMTools SNP 388366 388366 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold109 SAMTools SNP 388449 388449 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold109 SAMTools SNP 388623 388623 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold109 SAMTools SNP 388637 388637 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C2%2C28%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold109 SAMTools SNP 388656 388656 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold109 SAMTools SNP 389047 389047 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D38%2C34%2C8%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.018%2C0.14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold109 SAMTools SNP 389474 389474 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C10%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 389521 389521 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C107%2C7%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0023%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold109 SAMTools SNP 389539 389539 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C79%2C7%2C7%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.015%2C0.024%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold109 SAMTools SNP 389578 389578 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.079%2C0.031%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold109 SAMTools SNP 389605 389605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 389772 389772 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold109 SAMTools SNP 389958 389958 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 389972 389972 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.23%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 390055 390055 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0053%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C230:33 scaffold109 SAMTools SNP 390795 390795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold109 SAMTools SNP 391066 391066 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold109 SAMTools SNP 394006 394006 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold109 SAMTools SNP 394064 394064 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C33%2C0:63 scaffold109 SAMTools SNP 407284 407284 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 407498 407498 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold109 SAMTools SNP 407516 407516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 412646 412646 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 420116 420116 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold109 SAMTools SNP 421998 421998 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 422067 422067 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold109 SAMTools SNP 422311 422311 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold109 SAMTools SNP 422562 422562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.3%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold109 SAMTools SNP 422692 422692 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.3%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold109 SAMTools SNP 442731 442731 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold109 SAMTools SNP 445332 445332 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold109 SAMTools SNP 445395 445395 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold109 SAMTools SNP 445833 445833 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold109 SAMTools SNP 446083 446083 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 446089 446089 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 446245 446245 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold109 SAMTools SNP 446604 446604 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold109 SAMTools SNP 450140 450140 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 450142 450142 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 451045 451045 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold109 SAMTools SNP 451461 451461 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold109 SAMTools SNP 454129 454129 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 477691 477691 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 481554 481554 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 488237 488237 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold109 SAMTools SNP 488607 488607 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold109 SAMTools SNP 516053 516053 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 516090 516090 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 536268 536268 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold109 SAMTools SNP 536406 536406 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold109 SAMTools SNP 536967 536967 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold109 SAMTools SNP 536988 536988 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold109 SAMTools SNP 540097 540097 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C71%2C12%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.066%2C1.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C153:99 scaffold109 SAMTools SNP 542563 542563 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold109 SAMTools SNP 544364 544364 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold109 SAMTools SNP 544385 544385 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 544913 544913 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 547269 547269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 547353 547353 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold109 SAMTools SNP 553033 553033 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0045%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold109 SAMTools SNP 556522 556522 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C4%2C15%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.33%2C6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold109 SAMTools SNP 557926 557926 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00011%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C198:42 scaffold109 SAMTools SNP 559755 559755 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold109 SAMTools SNP 559944 559944 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.43%2C3.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C241:62 scaffold109 SAMTools SNP 560086 560086 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.093%2C0.00054%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold109 SAMTools SNP 560178 560178 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C84%2C0:99 scaffold109 SAMTools SNP 563214 563214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C22%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold109 SAMTools SNP 567335 567335 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C13%2C21%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.25%2C0.35%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 576120 576120 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold109 SAMTools SNP 576154 576154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold109 SAMTools SNP 579135 579135 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold109 SAMTools SNP 580191 580191 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C97%2C4%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 594742 594742 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold109 SAMTools SNP 603496 603496 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold109 SAMTools SNP 604158 604158 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C36%2C0:69 scaffold109 SAMTools SNP 604402 604402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold109 SAMTools SNP 604429 604429 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold109 SAMTools SNP 604492 604492 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold109 SAMTools SNP 608094 608094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C16%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold109 SAMTools SNP 621076 621076 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold109 SAMTools SNP 621142 621142 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold109 SAMTools SNP 622392 622392 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C115:99 scaffold109 SAMTools SNP 623102 623102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold109 SAMTools SNP 623141 623141 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold109 SAMTools SNP 623165 623165 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C9%2C22%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.78%2C6.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold109 SAMTools SNP 623171 623171 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C11%2C17%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.43%2C5.5e-22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold109 SAMTools SNP 627105 627105 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold109 SAMTools SNP 627117 627117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold109 SAMTools SNP 627142 627142 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.26%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold109 SAMTools SNP 627157 627157 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold109 SAMTools SNP 627166 627166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C6%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold109 SAMTools SNP 627667 627667 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0022%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold109 SAMTools SNP 627670 627670 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold109 SAMTools SNP 628385 628385 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold109 SAMTools SNP 660007 660007 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold109 SAMTools SNP 660113 660113 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.083%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C184:99 scaffold109 SAMTools SNP 660948 660948 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold109 SAMTools SNP 660963 660963 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold109 SAMTools SNP 661741 661741 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.071%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold109 SAMTools SNP 662070 662070 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold109 SAMTools SNP 662493 662493 18.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold109 SAMTools SNP 668152 668152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 668520 668520 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 668937 668937 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold109 SAMTools SNP 669989 669989 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold109 SAMTools SNP 671702 671702 64.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold109 SAMTools SNP 672335 672335 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold109 SAMTools SNP 674855 674855 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0059%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold109 SAMTools SNP 675218 675218 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold109 SAMTools SNP 676146 676146 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold109 SAMTools SNP 676848 676848 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 676876 676876 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 677405 677405 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C99%2C0:99 scaffold109 SAMTools SNP 677450 677450 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold109 SAMTools SNP 677623 677623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold109 SAMTools SNP 681774 681774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold109 SAMTools SNP 684021 684021 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold109 SAMTools SNP 684024 684024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold109 SAMTools SNP 684438 684438 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold109 SAMTools SNP 684779 684779 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold109 SAMTools SNP 684792 684792 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold109 SAMTools SNP 712940 712940 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold109 SAMTools SNP 713053 713053 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold109 SAMTools SNP 713897 713897 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.07%2C0.00012%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C222:51 scaffold109 SAMTools SNP 714018 714018 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold109 SAMTools SNP 715432 715432 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold109 SAMTools SNP 716572 716572 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold109 SAMTools SNP 716895 716895 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold109 SAMTools SNP 716943 716943 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold109 SAMTools SNP 717181 717181 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold109 SAMTools SNP 717187 717187 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold109 SAMTools SNP 717325 717325 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold109 SAMTools SNP 717628 717628 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold109 SAMTools SNP 717877 717877 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C96%2C0:99 scaffold109 SAMTools SNP 717972 717972 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.42%2C5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C174:49 scaffold1093 SAMTools SNP 216 216 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1093 SAMTools SNP 246 246 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1093 SAMTools SNP 333 333 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 742 742 24.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1093 SAMTools SNP 751 751 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold1093 SAMTools SNP 905 905 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1093 SAMTools SNP 1346 1346 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold1093 SAMTools SNP 1403 1403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1093 SAMTools SNP 1585 1585 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold1093 SAMTools SNP 2045 2045 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C178%2C0:99 scaffold1093 SAMTools SNP 5327 5327 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.028%2C7.8e-32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C240:46 scaffold1093 SAMTools SNP 5410 5410 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold1093 SAMTools SNP 5924 5924 22.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1093 SAMTools SNP 5954 5954 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C0%2C8%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1093 SAMTools SNP 6240 6240 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C212:99 scaffold1093 SAMTools SNP 6363 6363 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 6372 6372 63.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C6%2C0:10 scaffold1093 SAMTools SNP 6962 6962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.076%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 7836 7836 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1093 SAMTools SNP 8377 8377 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1093 SAMTools SNP 10227 10227 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1093 SAMTools SNP 10257 10257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1093 SAMTools SNP 10573 10573 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1093 SAMTools SNP 10661 10661 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C15%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.065%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold1093 SAMTools SNP 11176 11176 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-3.02%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C27:30 scaffold1093 SAMTools SNP 11755 11755 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1093 SAMTools SNP 11773 11773 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C14%2C15%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.22%2C3.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1093 SAMTools SNP 13503 13503 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C50%2C55%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D8.9e-12%2C6.2e-17%2C1%2C8.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1093 SAMTools SNP 13547 13547 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C79%2C34%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 13758 13758 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 14957 14957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C5%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 17424 17424 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C9%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 17487 17487 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C39%2C27%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 19368 19368 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold1093 SAMTools SNP 21599 21599 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C198:99 scaffold1093 SAMTools SNP 22468 22468 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1093 SAMTools SNP 23284 23284 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1093 SAMTools SNP 26204 26204 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C47%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1093 SAMTools SNP 27316 27316 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.28%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1093 SAMTools SNP 27328 27328 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1093 SAMTools SNP 27370 27370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1093 SAMTools SNP 27427 27427 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C19%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.038%2C1.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1093 SAMTools SNP 29069 29069 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1093 SAMTools SNP 29129 29129 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1093 SAMTools SNP 29156 29156 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1093 SAMTools SNP 29868 29868 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 29876 29876 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 29898 29898 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C193:99 scaffold1093 SAMTools SNP 29904 29904 216 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C6%2C238%2C0%2C235:45 scaffold1093 SAMTools SNP 31190 31190 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1093 SAMTools SNP 36734 36734 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 37205 37205 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C2%2C18%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.7%2C5.3e-22%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1093 SAMTools SNP 37245 37245 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1093 SAMTools SNP 37599 37599 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.088%2C0.16%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1093 SAMTools SNP 38085 38085 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C127:28 scaffold1093 SAMTools SNP 38198 38198 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.42%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1093 SAMTools SNP 38207 38207 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 38814 38814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C27%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 56991 56991 26.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold1093 SAMTools SNP 62476 62476 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1093 SAMTools SNP 72153 72153 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1093 SAMTools SNP 73224 73224 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1093 SAMTools SNP 77128 77128 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C146%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 79558 79558 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1093 SAMTools SNP 79588 79588 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1093 SAMTools SNP 85425 85425 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1093 SAMTools SNP 86181 86181 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C26%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1093 SAMTools SNP 86682 86682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C27%2C17%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0021%2C4.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1093 SAMTools SNP 86792 86792 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C36%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C144%2C0:99 scaffold1093 SAMTools SNP 87600 87600 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.33%2C1.9e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C253:64 scaffold1093 SAMTools SNP 93333 93333 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1093 SAMTools SNP 93492 93492 31.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1093 SAMTools SNP 93682 93682 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1093 SAMTools SNP 93888 93888 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold1093 SAMTools SNP 94026 94026 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C24%2C0:45 scaffold1093 SAMTools SNP 95094 95094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1093 SAMTools SNP 95140 95140 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C8.3e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1093 SAMTools SNP 98463 98463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C368%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 99039 99039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C67%2C11%3BMQ%3D50%3BFQ%3D-222%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C195%2C0:99 scaffold1093 SAMTools SNP 99047 99047 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C10%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1093 SAMTools SNP 100823 100823 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C65%2C104%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 117417 117417 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1093 SAMTools SNP 117780 117780 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1093 SAMTools SNP 117787 117787 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C38:41 scaffold1093 SAMTools SNP 117853 117853 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1093 SAMTools SNP 119450 119450 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.26%2C0.00021%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1093 SAMTools SNP 119642 119642 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.4%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C127:55 scaffold1093 SAMTools SNP 122144 122144 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1093 SAMTools SNP 123569 123569 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C2.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1093 SAMTools SNP 124311 124311 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1093 SAMTools SNP 124355 124355 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C222:99 scaffold1093 SAMTools SNP 125633 125633 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1093 SAMTools SNP 125635 125635 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1093 SAMTools SNP 126365 126365 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.3%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1093 SAMTools SNP 126389 126389 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.0029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1093 SAMTools SNP 126446 126446 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1093 SAMTools SNP 127018 127018 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1093 SAMTools SNP 127057 127057 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.062%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1093 SAMTools SNP 127192 127192 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 130708 130708 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 130721 130721 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 140920 140920 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.028%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C100:42 scaffold1093 SAMTools SNP 141571 141571 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.4%2C0.003%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold1093 SAMTools SNP 142467 142467 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C249:99 scaffold1093 SAMTools SNP 144884 144884 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1093 SAMTools SNP 144905 144905 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1093 SAMTools SNP 151060 151060 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 151072 151072 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 151343 151343 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1093 SAMTools SNP 161214 161214 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C75%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C229%2C0:99 scaffold1093 SAMTools SNP 161322 161322 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1093 SAMTools SNP 163036 163036 110 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C111%2C0%2C131%2C71%2C125:99 scaffold1093 SAMTools SNP 163817 163817 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C7%2C14%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.77%2C2.7e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1093 SAMTools SNP 163993 163993 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0374%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D20%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C5.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1093 SAMTools SNP 164637 164637 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C54%2C15%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.0013%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 166044 166044 72.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold1093 SAMTools SNP 166183 166183 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1093 SAMTools SNP 166200 166200 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1093 SAMTools SNP 166775 166775 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C18%2C51%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00042%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1093 SAMTools SNP 166958 166958 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 172856 172856 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C3%2C0%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D0.54%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1093 SAMTools SNP 176952 176952 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C32%2C72%2C36%3BMQ%3D28%3BFQ%3D177%3BPV4%3D0.66%2C5.4e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C249:99 scaffold1093 SAMTools SNP 192725 192725 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1093 SAMTools SNP 194827 194827 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1093 SAMTools SNP 195776 195776 15.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.00064%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C12:15 scaffold1093 SAMTools SNP 204060 204060 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1093 SAMTools SNP 204266 204266 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1093 SAMTools SNP 204380 204380 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 207620 207620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 213360 213360 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1093 SAMTools SNP 272086 272086 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1093 SAMTools SNP 294265 294265 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0.012%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold1093 SAMTools SNP 297180 297180 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.36%2C2.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C146:59 scaffold1093 SAMTools SNP 302561 302561 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C30%2C0:57 scaffold1093 SAMTools SNP 303174 303174 66 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C111%2C0%2C80%2C76%2C77:99 scaffold1093 SAMTools SNP 303440 303440 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C105%2C0:99 scaffold1093 SAMTools SNP 304273 304273 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D659%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 306519 306519 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D658%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C280%2C143%2C135%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D8.5e-16%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1093 SAMTools SNP 306662 306662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C53%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1093 SAMTools SNP 306755 306755 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.014%2C4.5e-53%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1093 SAMTools SNP 307162 307162 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D575%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D63%2C376%2C129%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D6.2e-80%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1093 SAMTools SNP 307394 307394 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C172%2C117%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-08%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 310020 310020 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C11%2C25%2C12%3BMQ%3D50%3BFQ%3D40%3BPV4%3D2.3e-06%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1093 SAMTools SNP 310086 310086 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D368%2C15%2C161%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 310263 310263 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D789%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C318%2C175%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-21%2C1%2C1%2C1e-45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 310550 310550 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C150%2C2%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 313089 313089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1093 SAMTools SNP 313090 313090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1093 SAMTools SNP 313158 313158 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C286%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 313752 313752 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D812%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold1093 SAMTools SNP 316203 316203 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.61%2C0.026%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1093 SAMTools SNP 342417 342417 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1093 SAMTools SNP 343930 343930 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1093 SAMTools SNP 343997 343997 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C36%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 345550 345550 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C0%2C12%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1093 SAMTools SNP 345848 345848 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1093 SAMTools SNP 345899 345899 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.39%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C175:99 scaffold1093 SAMTools SNP 346426 346426 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1093 SAMTools SNP 347024 347024 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1093 SAMTools SNP 348402 348402 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1093 SAMTools SNP 349818 349818 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1093 SAMTools SNP 350370 350370 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1093 SAMTools SNP 350433 350433 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D31.3%3BPV4%3D0.4%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C60:61 scaffold1093 SAMTools SNP 352553 352553 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 352559 352559 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C281%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 354935 354935 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C174%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 354946 354946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C190%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 355196 355196 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1093 SAMTools SNP 355283 355283 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C154:72 scaffold1093 SAMTools SNP 355284 355284 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1093 SAMTools SNP 355490 355490 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C101%2C54%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 355532 355532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C330%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1093 SAMTools SNP 356813 356813 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C64%2C7%2C13%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.00011%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1093 SAMTools SNP 356817 356817 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1093 SAMTools SNP 360839 360839 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 361638 361638 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.087%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1093 SAMTools SNP 361695 361695 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1093 SAMTools SNP 361930 361930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1093 SAMTools SNP 364675 364675 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1093 SAMTools SNP 367113 367113 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C54%2C0:99 scaffold1093 SAMTools SNP 367263 367263 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold1093 SAMTools SNP 367866 367866 145 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1093 SAMTools SNP 368273 368273 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1093 SAMTools SNP 368284 368284 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1093 SAMTools SNP 375989 375989 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0048%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold1093 SAMTools SNP 380999 380999 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1093 SAMTools SNP 381004 381004 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1093 SAMTools SNP 417353 417353 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C38:41 scaffold1093 SAMTools SNP 433353 433353 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1093 SAMTools SNP 433900 433900 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C78%2C0:99 scaffold1093 SAMTools SNP 439673 439673 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 439958 439958 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold1093 SAMTools SNP 440175 440175 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1093 SAMTools SNP 440191 440191 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1093 SAMTools SNP 440818 440818 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1093 SAMTools SNP 440827 440827 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1093 SAMTools SNP 440868 440868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 440973 440973 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1093 SAMTools SNP 440984 440984 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1093 SAMTools SNP 441026 441026 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1093 SAMTools SNP 441463 441463 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1093 SAMTools SNP 441480 441480 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1093 SAMTools SNP 441489 441489 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.2%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1093 SAMTools SNP 441512 441512 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1093 SAMTools SNP 442263 442263 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1093 SAMTools SNP 442293 442293 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1093 SAMTools SNP 444635 444635 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 444644 444644 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 444647 444647 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 445335 445335 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1093 SAMTools SNP 448947 448947 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 449024 449024 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 529835 529835 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1093 SAMTools SNP 530752 530752 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1093 SAMTools SNP 531316 531316 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold1093 SAMTools SNP 531425 531425 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C40:42 scaffold1093 SAMTools SNP 534202 534202 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 540768 540768 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1093 SAMTools SNP 543094 543094 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold1093 SAMTools SNP 579337 579337 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold1093 SAMTools SNP 580706 580706 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1093 SAMTools SNP 580724 580724 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.092%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1093 SAMTools SNP 580730 580730 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C0.15%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold1093 SAMTools SNP 581224 581224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 582684 582684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1093 SAMTools SNP 582693 582693 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 582920 582920 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1093 SAMTools SNP 583724 583724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1093 SAMTools SNP 583771 583771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1093 SAMTools SNP 584882 584882 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C45%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1093 SAMTools SNP 584891 584891 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.12%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1093 SAMTools SNP 585492 585492 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.14%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C180:82 scaffold1093 SAMTools SNP 585498 585498 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.047%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C232:31 scaffold1093 SAMTools SNP 585523 585523 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1093 SAMTools SNP 596661 596661 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1094 SAMTools SNP 11673 11673 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1094 SAMTools SNP 19652 19652 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 39138 39138 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1094 SAMTools SNP 39357 39357 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1094 SAMTools SNP 41306 41306 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C31%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 41348 41348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 41983 41983 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 42184 42184 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1094 SAMTools SNP 42217 42217 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1094 SAMTools SNP 42544 42544 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C9%2C9%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.022%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1094 SAMTools SNP 42768 42768 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1094 SAMTools SNP 44152 44152 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C29%2C1%2C3%3BMQ%3D49%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1094 SAMTools SNP 44184 44184 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C3%2C22%2C29%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.63%2C0.19%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1094 SAMTools SNP 44711 44711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C42%3BMQ%3D49%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1094 SAMTools SNP 44714 44714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C42%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1094 SAMTools SNP 45125 45125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C13%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1094 SAMTools SNP 46310 46310 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1094 SAMTools SNP 46834 46834 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.31%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C240:99 scaffold1094 SAMTools SNP 50083 50083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C13%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C5.3e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 50500 50500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C44%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1094 SAMTools SNP 50674 50674 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0017%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1094 SAMTools SNP 50928 50928 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C16%2C1%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.41%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1094 SAMTools SNP 50976 50976 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C36%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D2.3e-07%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1094 SAMTools SNP 52574 52574 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1094 SAMTools SNP 52583 52583 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1094 SAMTools SNP 52661 52661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1094 SAMTools SNP 55947 55947 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.57%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1094 SAMTools SNP 55960 55960 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1094 SAMTools SNP 60430 60430 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1094 SAMTools SNP 60706 60706 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1094 SAMTools SNP 108841 108841 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1094 SAMTools SNP 108856 108856 93.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold1094 SAMTools SNP 113136 113136 12 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1094 SAMTools SNP 122750 122750 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1094 SAMTools SNP 127441 127441 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1094 SAMTools SNP 157082 157082 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 157654 157654 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 162671 162671 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 206573 206573 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 209175 209175 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 210587 210587 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1094 SAMTools SNP 210595 210595 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1094 SAMTools SNP 214273 214273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 219864 219864 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1094 SAMTools SNP 219993 219993 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C24%2C0:45 scaffold1094 SAMTools SNP 220026 220026 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C4e-08%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C227:99 scaffold1094 SAMTools SNP 221058 221058 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1094 SAMTools SNP 222011 222011 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C196:62 scaffold1094 SAMTools SNP 222032 222032 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1094 SAMTools SNP 222042 222042 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C140:99 scaffold1094 SAMTools SNP 222650 222650 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1094 SAMTools SNP 237348 237348 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1094 SAMTools SNP 237373 237373 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1094 SAMTools SNP 239914 239914 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1094 SAMTools SNP 245894 245894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1094 SAMTools SNP 248074 248074 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1094 SAMTools SNP 249315 249315 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 250060 250060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 253930 253930 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1094 SAMTools SNP 254101 254101 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1094 SAMTools SNP 255867 255867 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 256005 256005 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.29%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C88:72 scaffold1094 SAMTools SNP 259521 259521 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.015%2C1.5e-08%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1094 SAMTools SNP 260176 260176 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C81%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1.5e-06%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 260242 260242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C61%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 260257 260257 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C65%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 260996 260996 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C18%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 261308 261308 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C7.7e-08%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 262709 262709 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1094 SAMTools SNP 263494 263494 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1094 SAMTools SNP 263579 263579 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C157:34 scaffold1094 SAMTools SNP 263846 263846 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.022%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1094 SAMTools SNP 265278 265278 51.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1094 SAMTools SNP 265850 265850 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C20%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 267333 267333 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1094 SAMTools SNP 268277 268277 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1094 SAMTools SNP 270998 270998 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C27%2C33%2C35%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C2e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1094 SAMTools SNP 271748 271748 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C73%2C89%2C96%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.2%2C4.1e-240%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1094 SAMTools SNP 273718 273718 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1.3e-19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C113:76 scaffold1094 SAMTools SNP 275351 275351 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.029%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1094 SAMTools SNP 275522 275522 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 275838 275838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 276145 276145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C49%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1094 SAMTools SNP 276273 276273 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1094 SAMTools SNP 277192 277192 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1094 SAMTools SNP 277450 277450 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C33%2C0:63 scaffold1094 SAMTools SNP 277511 277511 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.08%2C4.7e-06%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1094 SAMTools SNP 277639 277639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-08%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 277721 277721 10.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1094 SAMTools SNP 277835 277835 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C108%2C0:99 scaffold1094 SAMTools SNP 277909 277909 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1094 SAMTools SNP 277930 277930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1094 SAMTools SNP 278424 278424 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C35%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1094 SAMTools SNP 279284 279284 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 279510 279510 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 279519 279519 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1094 SAMTools SNP 280510 280510 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 280871 280871 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1094 SAMTools SNP 280885 280885 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1094 SAMTools SNP 281420 281420 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1094 SAMTools SNP 281426 281426 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1094 SAMTools SNP 281816 281816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1094 SAMTools SNP 281825 281825 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1094 SAMTools SNP 281870 281870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1094 SAMTools SNP 284042 284042 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 285732 285732 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1094 SAMTools SNP 285975 285975 51.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold1094 SAMTools SNP 286507 286507 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C27%2C18%3BMQ%3D50%3BFQ%3D121%3BPV4%3D4.9e-06%2C1.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1094 SAMTools SNP 301109 301109 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C252:99 scaffold1094 SAMTools SNP 301145 301145 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C24%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1094 SAMTools SNP 301249 301249 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C29%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 301258 301258 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C32%2C36%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 301596 301596 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C49%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 302922 302922 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C0%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.096%2C0.042%2C1%2C7.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1094 SAMTools SNP 304954 304954 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1094 SAMTools SNP 306952 306952 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1094 SAMTools SNP 309261 309261 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C245:99 scaffold1094 SAMTools SNP 309276 309276 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C247:99 scaffold1094 SAMTools SNP 309873 309873 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 311474 311474 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C2%2C63%2C17%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0048%2C3.5e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1094 SAMTools SNP 311596 311596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 311625 311625 44.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1094 SAMTools SNP 311680 311680 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 312057 312057 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 312444 312444 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 313681 313681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C311%2C63%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 314010 314010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C61%2C132%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 314326 314326 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 314380 314380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 314694 314694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1094 SAMTools SNP 314697 314697 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1094 SAMTools SNP 314763 314763 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 315113 315113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 315717 315717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 316263 316263 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 316371 316371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 317460 317460 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1094 SAMTools SNP 317530 317530 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0035%2C5.1e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1094 SAMTools SNP 317713 317713 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 325563 325563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1094 SAMTools SNP 327514 327514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C52%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1094 SAMTools SNP 329280 329280 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1094 SAMTools SNP 331087 331087 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold1094 SAMTools SNP 335329 335329 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1094 SAMTools SNP 341648 341648 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1094 SAMTools SNP 342088 342088 17.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1094 SAMTools SNP 342337 342337 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1094 SAMTools SNP 350338 350338 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1094 SAMTools SNP 368352 368352 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.32%2C1.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C242:51 scaffold1094 SAMTools SNP 369090 369090 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1094 SAMTools SNP 406805 406805 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1094 SAMTools SNP 406911 406911 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1094 SAMTools SNP 424962 424962 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 425076 425076 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1094 SAMTools SNP 433093 433093 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1094 SAMTools SNP 437010 437010 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C27%2C0:41 scaffold1094 SAMTools SNP 440078 440078 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1094 SAMTools SNP 442797 442797 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1094 SAMTools SNP 443060 443060 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1094 SAMTools SNP 443070 443070 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1094 SAMTools SNP 443098 443098 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C25%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.00017%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1094 SAMTools SNP 443136 443136 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 443912 443912 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C40%2C1%2C14%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0078%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1094 SAMTools SNP 444483 444483 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C0.012%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 444623 444623 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C3%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1094 SAMTools SNP 445005 445005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 445032 445032 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 445832 445832 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1094 SAMTools SNP 445842 445842 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1094 SAMTools SNP 445892 445892 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1094 SAMTools SNP 445907 445907 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1094 SAMTools SNP 450171 450171 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C13%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1094 SAMTools SNP 450207 450207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C10%2C7%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.087%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 450422 450422 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C2%2C7%3BMQ%3D45%3BFQ%3D172%3BPV4%3D0.68%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1094 SAMTools SNP 450481 450481 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C21%2C3%2C5%3BMQ%3D48%3BFQ%3D85%3BPV4%3D0.13%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1094 SAMTools SNP 450676 450676 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 450691 450691 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 451485 451485 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C0.011%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1094 SAMTools SNP 452788 452788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 452817 452817 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 452831 452831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 452989 452989 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1094 SAMTools SNP 453349 453349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C26%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 453356 453356 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 453397 453397 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C40%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.11%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 453608 453608 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 453638 453638 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C28%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.0048%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 453660 453660 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.028%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1094 SAMTools SNP 453716 453716 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 454098 454098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 454269 454269 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C29%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D4.1e-06%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1094 SAMTools SNP 454729 454729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-10%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 454768 454768 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 454790 454790 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C7%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 454969 454969 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C24%2C0:45 scaffold1094 SAMTools SNP 454971 454971 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1094 SAMTools SNP 455013 455013 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 455030 455030 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C19%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 457110 457110 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1094 SAMTools SNP 457782 457782 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1094 SAMTools SNP 458571 458571 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1094 SAMTools SNP 458672 458672 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C225:99 scaffold1094 SAMTools SNP 458941 458941 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.21%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C243:99 scaffold1094 SAMTools SNP 459246 459246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C3%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1094 SAMTools SNP 459335 459335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1094 SAMTools SNP 459338 459338 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 459635 459635 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C103%2C29%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 459686 459686 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C37%2C1%2C15%3BMQ%3D50%3BFQ%3D69%3BPV4%3D4.4e-05%2C1%2C1%2C9.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1094 SAMTools SNP 460753 460753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1094 SAMTools SNP 461254 461254 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C18%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D3.7e-06%2C3.7e-15%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1094 SAMTools SNP 467168 467168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1094 SAMTools SNP 467517 467517 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1094 SAMTools SNP 467535 467535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1094 SAMTools SNP 467735 467735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1094 SAMTools SNP 468044 468044 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1094 SAMTools SNP 468528 468528 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1094 SAMTools SNP 468692 468692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1094 SAMTools SNP 468882 468882 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1094 SAMTools SNP 468964 468964 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0034%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1094 SAMTools SNP 469128 469128 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold1094 SAMTools SNP 469286 469286 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1094 SAMTools SNP 469302 469302 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1094 SAMTools SNP 469349 469349 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1094 SAMTools SNP 469570 469570 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1094 SAMTools SNP 469572 469572 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1094 SAMTools SNP 472103 472103 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1094 SAMTools SNP 472446 472446 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1094 SAMTools SNP 472461 472461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1094 SAMTools SNP 472677 472677 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1094 SAMTools SNP 472707 472707 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.55%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1094 SAMTools SNP 472736 472736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C7%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1094 SAMTools SNP 473400 473400 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1094 SAMTools SNP 473410 473410 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1094 SAMTools SNP 473412 473412 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1094 SAMTools SNP 476566 476566 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1094 SAMTools SNP 476582 476582 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C142%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 480075 480075 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C32%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1094 SAMTools SNP 480102 480102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C28%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 480346 480346 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1094 SAMTools SNP 480833 480833 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1094 SAMTools SNP 480836 480836 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.66%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1094 SAMTools SNP 481452 481452 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 481485 481485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1094 SAMTools SNP 481999 481999 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 482035 482035 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1094 SAMTools SNP 482999 482999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1094 SAMTools SNP 483068 483068 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C8.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C102:99 scaffold1094 SAMTools SNP 489286 489286 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C91:55 scaffold1094 SAMTools SNP 489360 489360 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1094 SAMTools SNP 489762 489762 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 490075 490075 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C18%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D6.8e-06%2C2.1e-07%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1094 SAMTools SNP 490266 490266 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold1094 SAMTools SNP 491779 491779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 491810 491810 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C147%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 491937 491937 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1094 SAMTools SNP 499963 499963 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1094 SAMTools SNP 499966 499966 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C210:70 scaffold1094 SAMTools SNP 500478 500478 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.057%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C224:99 scaffold1094 SAMTools SNP 502789 502789 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C15%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.15%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1094 SAMTools SNP 503216 503216 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.64%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1094 SAMTools SNP 503606 503606 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.13%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1094 SAMTools SNP 503651 503651 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1094 SAMTools SNP 504014 504014 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.16%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C155:76 scaffold1094 SAMTools SNP 504447 504447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1094 SAMTools SNP 505047 505047 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1094 SAMTools SNP 506092 506092 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1094 SAMTools SNP 507358 507358 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1094 SAMTools SNP 507439 507439 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1094 SAMTools SNP 507766 507766 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1094 SAMTools SNP 507807 507807 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1094 SAMTools SNP 508171 508171 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1094 SAMTools SNP 508357 508357 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C132:99 scaffold1094 SAMTools SNP 509135 509135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C0.34%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1094 SAMTools SNP 509150 509150 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1094 SAMTools SNP 509188 509188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1094 SAMTools SNP 509677 509677 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1094 SAMTools SNP 509982 509982 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 514674 514674 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1094 SAMTools SNP 514960 514960 62.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold1094 SAMTools SNP 515082 515082 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C39%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.5e-80%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1094 SAMTools SNP 515524 515524 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1094 SAMTools SNP 515566 515566 11.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1094 SAMTools SNP 516014 516014 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C15%2C0:27 scaffold1094 SAMTools SNP 526591 526591 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1094 SAMTools SNP 527106 527106 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1094 SAMTools SNP 527118 527118 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C98%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C4.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1094 SAMTools SNP 527316 527316 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D578%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C310%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 527439 527439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C242%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 527606 527606 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C61%2C119%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 527639 527639 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C84%2C247%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 527995 527995 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1094 SAMTools SNP 528102 528102 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold1094 SAMTools SNP 528109 528109 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D42%3BFQ%3D36.8%3BPV4%3D0.47%2C0.12%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C64:67 scaffold1094 SAMTools SNP 528338 528338 135 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C87%2C71%2C166%2C0%2C160:29 scaffold1094 SAMTools SNP 528679 528679 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold1094 SAMTools SNP 528983 528983 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C12%2C27%2C1%3BMQ%3D46%3BFQ%3D83%3BPV4%3D0.46%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1094 SAMTools SNP 529285 529285 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D17%2C5%2C170%2C10%3BMQ%3D47%3BFQ%3D-282%3BPV4%3D0.014%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 530307 530307 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D525%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D191%2C230%2C87%2C15%3BMQ%3D50%3BFQ%3D130%3BPV4%3D5.4e-14%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1094 SAMTools SNP 530317 530317 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C143%2C83%2C15%3BMQ%3D50%3BFQ%3D154%3BPV4%3D3.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1094 SAMTools SNP 530335 530335 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D289%2C46%2C1%2C84%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.8e-53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1094 SAMTools SNP 531258 531258 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D602%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C345%2C66%2C108%3BMQ%3D50%3BFQ%3D33%3BPV4%3D5.7e-08%2C5.1e-228%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1094 SAMTools SNP 531517 531517 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C55%2C22%2C59%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 531593 531593 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C52%2C1%2C28%3BMQ%3D48%3BFQ%3D95%3BPV4%3D3.1e-07%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1094 SAMTools SNP 531761 531761 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1094 SAMTools SNP 532040 532040 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C89%2C113%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 532330 532330 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1094 SAMTools SNP 532331 532331 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1094 SAMTools SNP 532455 532455 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C31%2C20%2C4%3BMQ%3D49%3BFQ%3D94%3BPV4%3D0.79%2C1%2C0.45%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1094 SAMTools SNP 532481 532481 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D260%2C26%2C244%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00092%2C1%2C0.35%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 532791 532791 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1094 SAMTools SNP 532914 532914 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C247%2C51%2C255%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 533110 533110 53.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C4:7 scaffold1094 SAMTools SNP 533127 533127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C77%2C35%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 533496 533496 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C39%2C114%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.011%2C0.05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 537141 537141 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1094 SAMTools SNP 537151 537151 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C124%2C47%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.011%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 537407 537407 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 539225 539225 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 540090 540090 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 545086 545086 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.3%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1094 SAMTools SNP 545435 545435 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C208:28 scaffold1094 SAMTools SNP 545960 545960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1094 SAMTools SNP 546810 546810 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C190:99 scaffold1094 SAMTools SNP 546834 546834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1094 SAMTools SNP 548390 548390 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 548431 548431 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold1094 SAMTools SNP 548446 548446 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1094 SAMTools SNP 563287 563287 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1094 SAMTools SNP 603337 603337 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1094 SAMTools SNP 603390 603390 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold1094 SAMTools SNP 656715 656715 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1094 SAMTools SNP 656736 656736 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold1094 SAMTools SNP 658668 658668 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1094 SAMTools SNP 659792 659792 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1094 SAMTools SNP 660036 660036 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1094 SAMTools SNP 660052 660052 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold1094 SAMTools SNP 660196 660196 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 660428 660428 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-05%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 660464 660464 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C4%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.095%2C0.0017%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1094 SAMTools SNP 660584 660584 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.011%2C0.0016%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1094 SAMTools SNP 660590 660590 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C10%2C10%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1094 SAMTools SNP 661141 661141 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold1094 SAMTools SNP 661509 661509 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1094 SAMTools SNP 661518 661518 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1094 SAMTools SNP 661917 661917 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1094 SAMTools SNP 662073 662073 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C21%2C0:39 scaffold1094 SAMTools SNP 662477 662477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 662902 662902 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1094 SAMTools SNP 662905 662905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.52%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1094 SAMTools SNP 662929 662929 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.00024%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C146:99 scaffold1094 SAMTools SNP 662962 662962 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 663292 663292 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C1.9e-07%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1094 SAMTools SNP 663484 663484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1094 SAMTools SNP 665129 665129 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold1094 SAMTools SNP 668787 668787 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C39%2C0:74 scaffold1094 SAMTools SNP 669259 669259 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C78%2C0:99 scaffold1094 SAMTools SNP 670090 670090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C53%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1094 SAMTools SNP 671472 671472 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1094 SAMTools SNP 674037 674037 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1094 SAMTools SNP 674993 674993 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D37%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C39%2C0:75 scaffold1094 SAMTools SNP 677028 677028 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1094 SAMTools SNP 681348 681348 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C222:99 scaffold1094 SAMTools SNP 681360 681360 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C245:99 scaffold1094 SAMTools SNP 681877 681877 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.25%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1094 SAMTools SNP 690255 690255 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1094 SAMTools SNP 692097 692097 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1094 SAMTools SNP 692128 692128 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1094 SAMTools SNP 692138 692138 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1094 SAMTools SNP 692688 692688 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1094 SAMTools SNP 692706 692706 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1094 SAMTools SNP 693028 693028 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1094 SAMTools SNP 710601 710601 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C8%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.53%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1094 SAMTools SNP 712034 712034 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C23%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C7.3e-27%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1094 SAMTools SNP 713324 713324 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.046%2C4.8e-21%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1094 SAMTools SNP 716480 716480 10.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1094 SAMTools SNP 716481 716481 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1096 SAMTools SNP 8830 8830 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C4%3BMQ%3D28%3BFQ%3D42%3BPV4%3D0.3%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C69:72 scaffold1096 SAMTools SNP 8863 8863 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C4%3BMQ%3D32%3BFQ%3D8.65%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C35:38 scaffold1096 SAMTools SNP 9187 9187 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C6%3BMQ%3D32%3BFQ%3D44%3BPV4%3D0.62%2C0.15%2C0.051%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C141:74 scaffold1096 SAMTools SNP 9274 9274 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1096 SAMTools SNP 10160 10160 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D42%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C158:99 scaffold1096 SAMTools SNP 10180 10180 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D41%3BFQ%3D74.2%3BPV4%3D0.46%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C109:99 scaffold1096 SAMTools SNP 10199 10199 64.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1096 SAMTools SNP 10804 10804 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0016%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold1096 SAMTools SNP 11564 11564 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C45%2C0:87 scaffold1096 SAMTools SNP 12398 12398 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1096 SAMTools SNP 12649 12649 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1096 SAMTools SNP 12835 12835 46.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1096 SAMTools SNP 12916 12916 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1096 SAMTools SNP 13107 13107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1096 SAMTools SNP 13114 13114 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1096 SAMTools SNP 39921 39921 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold1096 SAMTools SNP 40323 40323 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1096 SAMTools SNP 40978 40978 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.45%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1096 SAMTools SNP 73968 73968 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1096 SAMTools SNP 81621 81621 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1096 SAMTools SNP 82360 82360 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C117%2C0:99 scaffold1096 SAMTools SNP 82412 82412 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.42%2C4.9e-09%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold1096 SAMTools SNP 82846 82846 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C22%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C4.6e-25%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C214:99 scaffold1096 SAMTools SNP 88657 88657 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1096 SAMTools SNP 88663 88663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1096 SAMTools SNP 89019 89019 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1096 SAMTools SNP 89109 89109 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1096 SAMTools SNP 91066 91066 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C36%2C0:69 scaffold1096 SAMTools SNP 94623 94623 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1096 SAMTools SNP 96742 96742 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C111%2C0:99 scaffold1096 SAMTools SNP 97179 97179 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.36%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1096 SAMTools SNP 97983 97983 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C196:75 scaffold1096 SAMTools SNP 98268 98268 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1096 SAMTools SNP 99155 99155 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C247:87 scaffold1096 SAMTools SNP 100192 100192 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1096 SAMTools SNP 100207 100207 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1096 SAMTools SNP 100270 100270 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0153%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1096 SAMTools SNP 100271 100271 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1096 SAMTools SNP 100657 100657 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1096 SAMTools SNP 103313 103313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1096 SAMTools SNP 151218 151218 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 2044 2044 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1097 SAMTools SNP 2110 2110 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 3014 3014 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C233:99 scaffold1097 SAMTools SNP 30531 30531 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1097 SAMTools SNP 30557 30557 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 30924 30924 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1097 SAMTools SNP 50092 50092 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1097 SAMTools SNP 50096 50096 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1097 SAMTools SNP 50128 50128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D47%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold1097 SAMTools SNP 52735 52735 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.24%2C3.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1097 SAMTools SNP 52920 52920 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C2%2C41%2C0%3BMQ%3D43%3BFQ%3D17.1%3BPV4%3D0.5%2C2.3e-79%2C0.0081%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1097 SAMTools SNP 55868 55868 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1097 SAMTools SNP 57649 57649 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.48%2C3.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1097 SAMTools SNP 60355 60355 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1097 SAMTools SNP 82230 82230 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold1097 SAMTools SNP 206927 206927 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1097 SAMTools SNP 218117 218117 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1097 SAMTools SNP 218146 218146 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1097 SAMTools SNP 218239 218239 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C11%3BMQ%3D47%3BFQ%3D-60%3BPV4%3D0.27%2C1e-13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0:63 scaffold1097 SAMTools SNP 219358 219358 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 219747 219747 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 219762 219762 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 220354 220354 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 220357 220357 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 221338 221338 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 221371 221371 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 221436 221436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 221835 221835 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1097 SAMTools SNP 222292 222292 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1097 SAMTools SNP 222339 222339 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 225154 225154 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1097 SAMTools SNP 225479 225479 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1097 SAMTools SNP 225940 225940 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 226617 226617 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 226664 226664 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1097 SAMTools SNP 227560 227560 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.19%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold1097 SAMTools SNP 227620 227620 197 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C98:99 scaffold1097 SAMTools SNP 227635 227635 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.38%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold1097 SAMTools SNP 227739 227739 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1097 SAMTools SNP 227893 227893 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 228200 228200 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1097 SAMTools SNP 229159 229159 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1097 SAMTools SNP 229225 229225 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1097 SAMTools SNP 229296 229296 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1097 SAMTools SNP 229309 229309 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1097 SAMTools SNP 229704 229704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 230354 230354 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C174:99 scaffold1097 SAMTools SNP 230367 230367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1097 SAMTools SNP 231327 231327 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 231506 231506 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 231521 231521 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 242026 242026 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C1.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C236:43 scaffold1097 SAMTools SNP 242214 242214 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold1097 SAMTools SNP 242356 242356 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C36%2C0:69 scaffold1097 SAMTools SNP 250035 250035 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1097 SAMTools SNP 250357 250357 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1097 SAMTools SNP 250819 250819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C10%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 251488 251488 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C33%2C97%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 251655 251655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C91%2C2%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.026%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 251878 251878 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C227:50 scaffold1097 SAMTools SNP 251900 251900 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1097 SAMTools SNP 252581 252581 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1097 SAMTools SNP 253256 253256 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D32.8%3BPV4%3D0.11%2C5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C60:63 scaffold1097 SAMTools SNP 253478 253478 30.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1097 SAMTools SNP 253847 253847 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold1097 SAMTools SNP 254066 254066 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1097 SAMTools SNP 260419 260419 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C24%2C0:45 scaffold1097 SAMTools SNP 261115 261115 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1097 SAMTools SNP 261530 261530 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1097 SAMTools SNP 265207 265207 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C9e-146%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1097 SAMTools SNP 265331 265331 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1097 SAMTools SNP 269684 269684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1097 SAMTools SNP 269718 269718 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1097 SAMTools SNP 270526 270526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1097 SAMTools SNP 271249 271249 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1097 SAMTools SNP 271704 271704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C8%2C42%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 272119 272119 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.61%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1097 SAMTools SNP 272128 272128 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.58%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1097 SAMTools SNP 273825 273825 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold1097 SAMTools SNP 274341 274341 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C8.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C224:82 scaffold1097 SAMTools SNP 275089 275089 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 275101 275101 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 275114 275114 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1097 SAMTools SNP 276377 276377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1097 SAMTools SNP 278026 278026 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1097 SAMTools SNP 280020 280020 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1097 SAMTools SNP 280082 280082 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1097 SAMTools SNP 281246 281246 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1097 SAMTools SNP 281264 281264 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1097 SAMTools SNP 281303 281303 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold1097 SAMTools SNP 281817 281817 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 281838 281838 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 282040 282040 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 282873 282873 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 282928 282928 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 282950 282950 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 283976 283976 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 289924 289924 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1097 SAMTools SNP 293913 293913 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 293970 293970 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold1097 SAMTools SNP 299626 299626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 301597 301597 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.4%2C0.0048%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C124:92 scaffold1097 SAMTools SNP 313962 313962 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold1097 SAMTools SNP 314719 314719 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 316699 316699 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1097 SAMTools SNP 316711 316711 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C23%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.36%2C3.8e-15%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1097 SAMTools SNP 319089 319089 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C169:99 scaffold1097 SAMTools SNP 321868 321868 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1097 SAMTools SNP 321967 321967 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1097 SAMTools SNP 322110 322110 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1097 SAMTools SNP 323045 323045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C7%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 323395 323395 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C15%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1097 SAMTools SNP 323451 323451 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 323664 323664 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 323805 323805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1097 SAMTools SNP 323820 323820 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1097 SAMTools SNP 324819 324819 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C70%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C232%2C0:99 scaffold1097 SAMTools SNP 324925 324925 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.041%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C244:66 scaffold1097 SAMTools SNP 324995 324995 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C51%2C0:95 scaffold1097 SAMTools SNP 325835 325835 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1097 SAMTools SNP 341349 341349 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1097 SAMTools SNP 341586 341586 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 343342 343342 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C218:99 scaffold1097 SAMTools SNP 343569 343569 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1097 SAMTools SNP 343968 343968 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1097 SAMTools SNP 344223 344223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1097 SAMTools SNP 344265 344265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1097 SAMTools SNP 345759 345759 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C5%3BMQ%3D47%3BFQ%3D37%3BPV4%3D0.17%2C4.2e-14%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1097 SAMTools SNP 346902 346902 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 346936 346936 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C33%2C0:63 scaffold1097 SAMTools SNP 346978 346978 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1097 SAMTools SNP 347002 347002 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1097 SAMTools SNP 347011 347011 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1097 SAMTools SNP 352828 352828 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 352901 352901 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 353623 353623 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 354862 354862 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 356408 356408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 356456 356456 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 360141 360141 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1097 SAMTools SNP 361934 361934 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 372014 372014 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 372342 372342 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.33%2C0.019%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C243:99 scaffold1097 SAMTools SNP 372364 372364 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C12%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1097 SAMTools SNP 372398 372398 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C27%3BMQ%3D50%3BFQ%3D190%3BPV4%3D5.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1097 SAMTools SNP 372600 372600 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C75%2C0:99 scaffold1097 SAMTools SNP 373120 373120 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 373170 373170 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1097 SAMTools SNP 373361 373361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1097 SAMTools SNP 377884 377884 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D2%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C3:6 scaffold1097 SAMTools SNP 378069 378069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.00037%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1097 SAMTools SNP 378075 378075 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.004%2C0.21%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1097 SAMTools SNP 379918 379918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 380213 380213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1097 SAMTools SNP 380392 380392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1097 SAMTools SNP 380431 380431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1097 SAMTools SNP 380740 380740 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C14%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00075%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1097 SAMTools SNP 380776 380776 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1097 SAMTools SNP 380789 380789 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 380800 380800 92.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C14:17 scaffold1097 SAMTools SNP 381400 381400 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1097 SAMTools SNP 381436 381436 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C4%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.5e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1097 SAMTools SNP 381502 381502 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1097 SAMTools SNP 381541 381541 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1097 SAMTools SNP 381727 381727 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.23%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1097 SAMTools SNP 381773 381773 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1097 SAMTools SNP 382494 382494 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.8e-10%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1097 SAMTools SNP 382518 382518 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C12%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1.9e-08%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1097 SAMTools SNP 384251 384251 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1097 SAMTools SNP 387545 387545 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1097 SAMTools SNP 387579 387579 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1097 SAMTools SNP 387604 387604 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1097 SAMTools SNP 390688 390688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1097 SAMTools SNP 390833 390833 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 390899 390899 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C11%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.46%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1097 SAMTools SNP 390995 390995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1097 SAMTools SNP 391007 391007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1097 SAMTools SNP 392299 392299 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1097 SAMTools SNP 392330 392330 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D46%3BFQ%3D71%3BPV4%3D0.075%2C0.43%2C0.029%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1097 SAMTools SNP 392338 392338 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C5%2C13%3BMQ%3D48%3BFQ%3D196%3BPV4%3D0.046%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1097 SAMTools SNP 396829 396829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 396883 396883 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C6%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1097 SAMTools SNP 396919 396919 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 397225 397225 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 400802 400802 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1097 SAMTools SNP 403601 403601 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1097 SAMTools SNP 403634 403634 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1097 SAMTools SNP 405955 405955 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.0053%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C77:80 scaffold1097 SAMTools SNP 406033 406033 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1097 SAMTools SNP 406226 406226 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1097 SAMTools SNP 406268 406268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 406313 406313 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.005%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C167:99 scaffold1097 SAMTools SNP 406720 406720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 406919 406919 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 407133 407133 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 407267 407267 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1097 SAMTools SNP 408092 408092 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 409648 409648 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 409943 409943 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1097 SAMTools SNP 410365 410365 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1097 SAMTools SNP 410383 410383 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1097 SAMTools SNP 410431 410431 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1097 SAMTools SNP 410449 410449 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1097 SAMTools SNP 410650 410650 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1097 SAMTools SNP 410737 410737 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 410893 410893 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1097 SAMTools SNP 411145 411145 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1097 SAMTools SNP 411154 411154 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1097 SAMTools SNP 411183 411183 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.011%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1097 SAMTools SNP 419523 419523 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 419768 419768 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold1097 SAMTools SNP 419979 419979 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1097 SAMTools SNP 420772 420772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 420839 420839 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1097 SAMTools SNP 420961 420961 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1097 SAMTools SNP 420984 420984 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1097 SAMTools SNP 421032 421032 167 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C47%2C26%2C188%2C0%2C185:39 scaffold1097 SAMTools SNP 422180 422180 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 422464 422464 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1097 SAMTools SNP 422726 422726 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1097 SAMTools SNP 422744 422744 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1097 SAMTools SNP 423102 423102 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1097 SAMTools SNP 424216 424216 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1097 SAMTools SNP 424243 424243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 426057 426057 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C2%2C11%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1097 SAMTools SNP 426090 426090 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C74%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1097 SAMTools SNP 426123 426123 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1097 SAMTools SNP 426453 426453 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 427173 427173 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1097 SAMTools SNP 428775 428775 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1097 SAMTools SNP 429117 429117 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1097 SAMTools SNP 429120 429120 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1097 SAMTools SNP 429489 429489 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1097 SAMTools SNP 429492 429492 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1097 SAMTools SNP 429495 429495 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1097 SAMTools SNP 429518 429518 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1097 SAMTools SNP 430030 430030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1097 SAMTools SNP 430841 430841 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C37%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1097 SAMTools SNP 430862 430862 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1097 SAMTools SNP 432611 432611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1097 SAMTools SNP 432626 432626 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1097 SAMTools SNP 432791 432791 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1097 SAMTools SNP 433900 433900 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C101:99 scaffold1097 SAMTools SNP 434014 434014 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1097 SAMTools SNP 434193 434193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1097 SAMTools SNP 434710 434710 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.58%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1097 SAMTools SNP 434741 434741 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.13%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1097 SAMTools SNP 435109 435109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1097 SAMTools SNP 435325 435325 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 435340 435340 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C2%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1097 SAMTools SNP 445046 445046 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C81:36 scaffold1097 SAMTools SNP 445263 445263 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 558841 558841 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1097 SAMTools SNP 558876 558876 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 559284 559284 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1097 SAMTools SNP 559323 559323 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 559332 559332 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 559341 559341 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 562567 562567 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 562893 562893 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 566556 566556 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1097 SAMTools SNP 574580 574580 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1097 SAMTools SNP 574594 574594 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1097 SAMTools SNP 574599 574599 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1097 SAMTools SNP 574712 574712 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 581123 581123 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 582681 582681 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1097 SAMTools SNP 583588 583588 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.094%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1097 SAMTools SNP 583639 583639 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 584695 584695 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C8.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C118:66 scaffold1097 SAMTools SNP 586899 586899 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C27%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C118:99 scaffold1097 SAMTools SNP 586913 586913 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C235:99 scaffold1097 SAMTools SNP 586946 586946 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.03%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C235:99 scaffold1097 SAMTools SNP 586961 586961 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1097 SAMTools SNP 594047 594047 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.061%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C101:99 scaffold1097 SAMTools SNP 594705 594705 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1097 SAMTools SNP 594767 594767 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1097 SAMTools SNP 595457 595457 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.36%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1097 SAMTools SNP 595735 595735 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.3%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C29:32 scaffold1097 SAMTools SNP 595748 595748 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.17%2C0.087%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C223:82 scaffold1097 SAMTools SNP 597004 597004 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1097 SAMTools SNP 597043 597043 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold1097 SAMTools SNP 597062 597062 62.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold1097 SAMTools SNP 598342 598342 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C0.29%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold1097 SAMTools SNP 598444 598444 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1097 SAMTools SNP 599144 599144 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1097 SAMTools SNP 600619 600619 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 600636 600636 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C24%2C0:45 scaffold1097 SAMTools SNP 621273 621273 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 623883 623883 17.1 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C33%2C47%2C0%2C44:6 scaffold1097 SAMTools SNP 631168 631168 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1097 SAMTools SNP 631250 631250 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C30%2C0:57 scaffold1097 SAMTools SNP 633963 633963 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold1097 SAMTools SNP 646487 646487 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 653173 653173 34.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1097 SAMTools SNP 661081 661081 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 661746 661746 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C116:99 scaffold1097 SAMTools SNP 661749 661749 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C203:40 scaffold1097 SAMTools SNP 661849 661849 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1097 SAMTools SNP 661852 661852 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1097 SAMTools SNP 663989 663989 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C34%2C43%2C9%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0011%2C8e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1097 SAMTools SNP 664218 664218 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C32%2C35%2C6%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00081%2C1.6e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1097 SAMTools SNP 664954 664954 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1097 SAMTools SNP 667900 667900 7.59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1097 SAMTools SNP 671159 671159 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1097 SAMTools SNP 673218 673218 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.077%2C6.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C190:73 scaffold1097 SAMTools SNP 673328 673328 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1097 SAMTools SNP 673508 673508 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1097 SAMTools SNP 673571 673571 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1097 SAMTools SNP 674159 674159 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 674174 674174 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1097 SAMTools SNP 674333 674333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1097 SAMTools SNP 674590 674590 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 675095 675095 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold1097 SAMTools SNP 675167 675167 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.49%2C5.1e-13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1097 SAMTools SNP 686376 686376 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 686393 686393 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 686501 686501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 692358 692358 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1097 SAMTools SNP 693575 693575 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1097 SAMTools SNP 700759 700759 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1097 SAMTools SNP 716196 716196 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 717030 717030 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 717045 717045 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 728111 728111 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C201:28 scaffold1097 SAMTools SNP 729628 729628 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 729630 729630 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1097 SAMTools SNP 730027 730027 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1097 SAMTools SNP 730069 730069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1097 SAMTools SNP 730372 730372 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1097 SAMTools SNP 730822 730822 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 730846 730846 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 730856 730856 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1097 SAMTools SNP 731069 731069 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1097 SAMTools SNP 731607 731607 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 731831 731831 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1097 SAMTools SNP 731865 731865 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1097 SAMTools SNP 743588 743588 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C2.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C152:99 scaffold1097 SAMTools SNP 749223 749223 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C9%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0016%2C1%2C1%2C9.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1097 SAMTools SNP 751078 751078 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 751421 751421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C21%2C51%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 751487 751487 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1097 SAMTools SNP 752157 752157 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 752191 752191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1097 SAMTools SNP 752350 752350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1097 SAMTools SNP 752931 752931 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C36%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 753322 753322 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C28%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1097 SAMTools SNP 753757 753757 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.26%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1097 SAMTools SNP 753766 753766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1097 SAMTools SNP 754538 754538 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 763119 763119 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1097 SAMTools SNP 763211 763211 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.24%2C8.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C212:75 scaffold1097 SAMTools SNP 763510 763510 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1097 SAMTools SNP 763542 763542 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1097 SAMTools SNP 763603 763603 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1097 SAMTools SNP 764368 764368 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1097 SAMTools SNP 766501 766501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 766542 766542 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1097 SAMTools SNP 766651 766651 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 766902 766902 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C145:34 scaffold1097 SAMTools SNP 767200 767200 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1097 SAMTools SNP 768627 768627 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1097 SAMTools SNP 770012 770012 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1097 SAMTools SNP 770925 770925 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1097 SAMTools SNP 770936 770936 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 773426 773426 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1097 SAMTools SNP 774023 774023 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 774061 774061 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1097 SAMTools SNP 775123 775123 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1097 SAMTools SNP 775195 775195 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1097 SAMTools SNP 775564 775564 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C129:99 scaffold1097 SAMTools SNP 775621 775621 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 775645 775645 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0052%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1097 SAMTools SNP 775973 775973 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1097 SAMTools SNP 776584 776584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1097 SAMTools SNP 776779 776779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1097 SAMTools SNP 778073 778073 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1097 SAMTools SNP 779210 779210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C93%2C45%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C9.7e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1097 SAMTools SNP 786458 786458 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1097 SAMTools SNP 786543 786543 40.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1097 SAMTools SNP 790762 790762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1097 SAMTools SNP 791093 791093 13.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1097 SAMTools SNP 792614 792614 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C110:92 scaffold1097 SAMTools SNP 792785 792785 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1097 SAMTools SNP 793353 793353 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D1%2C0.00085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C32:35 scaffold1097 SAMTools SNP 801818 801818 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1097 SAMTools SNP 811687 811687 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C5%2C22%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.075%2C4.8e-49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1097 SAMTools SNP 811886 811886 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1097 SAMTools SNP 812193 812193 56.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold1097 SAMTools SNP 813055 813055 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C24%2C0:45 scaffold1097 SAMTools SNP 815532 815532 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1097 SAMTools SNP 815891 815891 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C69%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1097 SAMTools SNP 817566 817566 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 825268 825268 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1097 SAMTools SNP 825549 825549 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1097 SAMTools SNP 827623 827623 26.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1097 SAMTools SNP 827764 827764 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1097 SAMTools SNP 828005 828005 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold1097 SAMTools SNP 849361 849361 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C0%2C10%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.097%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1097 SAMTools SNP 849548 849548 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1097 SAMTools SNP 865288 865288 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D45%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C66%2C0:96 scaffold1097 SAMTools SNP 871650 871650 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1097 SAMTools SNP 878902 878902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1097 SAMTools SNP 878984 878984 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C214:34 scaffold1097 SAMTools SNP 879036 879036 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.49%2C5.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1097 SAMTools SNP 893859 893859 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 894057 894057 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1097 SAMTools SNP 894493 894493 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C27%2C0:51 scaffold1097 SAMTools SNP 895224 895224 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.3e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C199:37 scaffold1097 SAMTools SNP 900025 900025 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 913366 913366 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1097 SAMTools SNP 913395 913395 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1097 SAMTools SNP 914934 914934 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1097 SAMTools SNP 940732 940732 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 940756 940756 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1097 SAMTools SNP 941882 941882 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold1097 SAMTools SNP 941906 941906 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1097 SAMTools SNP 942154 942154 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 942184 942184 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1097 SAMTools SNP 942360 942360 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 942369 942369 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 942511 942511 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1097 SAMTools SNP 942580 942580 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 946064 946064 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 946289 946289 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1097 SAMTools SNP 946319 946319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 946451 946451 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1097 SAMTools SNP 946902 946902 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C231:41 scaffold1097 SAMTools SNP 950529 950529 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 950539 950539 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 950889 950889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1097 SAMTools SNP 953046 953046 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1097 SAMTools SNP 954208 954208 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1098 SAMTools SNP 23370 23370 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1098 SAMTools SNP 25872 25872 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.33%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C201:99 scaffold1098 SAMTools SNP 25923 25923 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1098 SAMTools SNP 27450 27450 15.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1098 SAMTools SNP 147268 147268 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 147269 147269 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 147595 147595 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 147615 147615 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 196197 196197 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 196203 196203 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 196538 196538 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1098 SAMTools SNP 196565 196565 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1098 SAMTools SNP 197354 197354 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1098 SAMTools SNP 197815 197815 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1098 SAMTools SNP 200730 200730 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1098 SAMTools SNP 200887 200887 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1098 SAMTools SNP 211213 211213 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1098 SAMTools SNP 211248 211248 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.29%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1098 SAMTools SNP 211504 211504 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1098 SAMTools SNP 211675 211675 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1098 SAMTools SNP 211838 211838 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1098 SAMTools SNP 211869 211869 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.41%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1098 SAMTools SNP 216666 216666 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1098 SAMTools SNP 223625 223625 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1098 SAMTools SNP 223966 223966 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1098 SAMTools SNP 223990 223990 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1098 SAMTools SNP 224008 224008 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1098 SAMTools SNP 224961 224961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1098 SAMTools SNP 235548 235548 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1098 SAMTools SNP 235688 235688 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1098 SAMTools SNP 236365 236365 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1098 SAMTools SNP 236393 236393 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1098 SAMTools SNP 236414 236414 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1098 SAMTools SNP 238079 238079 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1098 SAMTools SNP 238926 238926 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1098 SAMTools SNP 239461 239461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1098 SAMTools SNP 239490 239490 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1098 SAMTools SNP 240137 240137 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1098 SAMTools SNP 240378 240378 31.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1098 SAMTools SNP 240482 240482 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1098 SAMTools SNP 240743 240743 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1098 SAMTools SNP 240774 240774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1098 SAMTools SNP 258531 258531 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1098 SAMTools SNP 258662 258662 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1098 SAMTools SNP 258685 258685 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold11 SAMTools SNP 612 612 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold11 SAMTools SNP 631 631 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold11 SAMTools SNP 728 728 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 33129 33129 34.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold11 SAMTools SNP 33266 33266 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.49%2C0.0016%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold11 SAMTools SNP 33546 33546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C113%2C3%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 34383 34383 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C50%2C6%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.053%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold11 SAMTools SNP 36316 36316 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold11 SAMTools SNP 42525 42525 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C24%2C0:45 scaffold11 SAMTools SNP 74249 74249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold11 SAMTools SNP 74258 74258 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 74267 74267 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 74277 74277 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C170:39 scaffold11 SAMTools SNP 74279 74279 162 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C30%2C9%2C183%2C0%2C180:39 scaffold11 SAMTools SNP 76282 76282 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold11 SAMTools SNP 76306 76306 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold11 SAMTools SNP 76964 76964 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold11 SAMTools SNP 77024 77024 75.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold11 SAMTools SNP 77406 77406 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold11 SAMTools SNP 77548 77548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold11 SAMTools SNP 78108 78108 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 78407 78407 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 78437 78437 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C29%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 78485 78485 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C13%2C60%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.48%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 78795 78795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C42%2C31%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 79123 79123 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C78%2C6%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 79135 79135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C66%2C6%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 79165 79165 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C49%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 79375 79375 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0034%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold11 SAMTools SNP 79393 79393 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.067%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold11 SAMTools SNP 79745 79745 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C6%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold11 SAMTools SNP 80053 80053 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold11 SAMTools SNP 80071 80071 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold11 SAMTools SNP 80113 80113 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C52%2C0%2C30%3BMQ%3D50%3BFQ%3D153%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold11 SAMTools SNP 80462 80462 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C45%3BMQ%3D50%3BFQ%3D-189;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C61:99 scaffold11 SAMTools SNP 80961 80961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C26%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold11 SAMTools SNP 85242 85242 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold11 SAMTools SNP 85243 85243 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold11 SAMTools SNP 85257 85257 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 86216 86216 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C23%2C16%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 86246 86246 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C4%2C17%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.24%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold11 SAMTools SNP 86273 86273 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.013%2C1%2C1.6e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 86321 86321 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold11 SAMTools SNP 86329 86329 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C95%2C29%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C1%2C5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 87015 87015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C11%2C43%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C0.41%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 87911 87911 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold11 SAMTools SNP 88025 88025 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 88976 88976 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold11 SAMTools SNP 91608 91608 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C13%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.5%2C0.16%2C4.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold11 SAMTools SNP 93162 93162 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C52:55 scaffold11 SAMTools SNP 94012 94012 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold11 SAMTools SNP 94039 94039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold11 SAMTools SNP 95142 95142 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 95175 95175 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C96%2C6%2C15%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.47%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold11 SAMTools SNP 95181 95181 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D63%2C84%2C6%2C9%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.034%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold11 SAMTools SNP 95196 95196 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C34%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold11 SAMTools SNP 95202 95202 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold11 SAMTools SNP 95226 95226 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C60%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.11%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C94:97 scaffold11 SAMTools SNP 107260 107260 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.54%2C2.2e-15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold11 SAMTools SNP 107380 107380 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C7%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.14%2C2.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold11 SAMTools SNP 120678 120678 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 120720 120720 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 124314 124314 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold11 SAMTools SNP 126206 126206 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold11 SAMTools SNP 126789 126789 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold11 SAMTools SNP 127573 127573 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold11 SAMTools SNP 131078 131078 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold11 SAMTools SNP 134377 134377 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 134559 134559 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold11 SAMTools SNP 134561 134561 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold11 SAMTools SNP 134585 134585 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold11 SAMTools SNP 134952 134952 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold11 SAMTools SNP 134966 134966 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D0.33%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold11 SAMTools SNP 134975 134975 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.34%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C132:99 scaffold11 SAMTools SNP 134999 134999 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold11 SAMTools SNP 136060 136060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold11 SAMTools SNP 136128 136128 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold11 SAMTools SNP 136339 136339 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C132:99 scaffold11 SAMTools SNP 136699 136699 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold11 SAMTools SNP 136850 136850 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold11 SAMTools SNP 139430 139430 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 140410 140410 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold11 SAMTools SNP 140419 140419 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold11 SAMTools SNP 144084 144084 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold11 SAMTools SNP 161278 161278 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold11 SAMTools SNP 161573 161573 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold11 SAMTools SNP 163416 163416 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold11 SAMTools SNP 207331 207331 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C0%2C11%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.009%2C2.8e-05%2C0.088%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold11 SAMTools SNP 222233 222233 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold11 SAMTools SNP 236835 236835 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 238357 238357 6.98 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold11 SAMTools SNP 303216 303216 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold11 SAMTools SNP 311407 311407 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold11 SAMTools SNP 319523 319523 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold11 SAMTools SNP 357230 357230 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold11 SAMTools SNP 357436 357436 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold11 SAMTools SNP 357484 357484 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold11 SAMTools SNP 357794 357794 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold11 SAMTools SNP 359790 359790 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold11 SAMTools SNP 360519 360519 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold11 SAMTools SNP 360609 360609 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold11 SAMTools SNP 361935 361935 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold11 SAMTools SNP 361944 361944 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C42:87 scaffold11 SAMTools SNP 362515 362515 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold11 SAMTools SNP 362523 362523 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold11 SAMTools SNP 363749 363749 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold11 SAMTools SNP 363812 363812 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C27%2C0:51 scaffold11 SAMTools SNP 363833 363833 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold11 SAMTools SNP 364884 364884 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold11 SAMTools SNP 366460 366460 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold11 SAMTools SNP 368261 368261 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold11 SAMTools SNP 368496 368496 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.038%2C0.021%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold11 SAMTools SNP 369268 369268 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold11 SAMTools SNP 369274 369274 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.38%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold11 SAMTools SNP 369680 369680 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold11 SAMTools SNP 369716 369716 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold11 SAMTools SNP 372137 372137 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold11 SAMTools SNP 373269 373269 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold11 SAMTools SNP 373420 373420 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-4.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C26:29 scaffold11 SAMTools SNP 376035 376035 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold11 SAMTools SNP 376061 376061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold11 SAMTools SNP 376106 376106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold11 SAMTools SNP 376542 376542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold11 SAMTools SNP 376656 376656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold11 SAMTools SNP 376665 376665 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.58%2C0.083%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold11 SAMTools SNP 379987 379987 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold11 SAMTools SNP 380011 380011 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold11 SAMTools SNP 381285 381285 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold11 SAMTools SNP 381640 381640 27.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold11 SAMTools SNP 396119 396119 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 4070 4070 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold110 SAMTools SNP 18069 18069 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 18200 18200 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold110 SAMTools SNP 18540 18540 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold110 SAMTools SNP 19131 19131 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold110 SAMTools SNP 19560 19560 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold110 SAMTools SNP 19563 19563 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold110 SAMTools SNP 20292 20292 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C216:99 scaffold110 SAMTools SNP 20346 20346 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.25%2C0.066%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C211:93 scaffold110 SAMTools SNP 20637 20637 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold110 SAMTools SNP 20642 20642 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold110 SAMTools SNP 20655 20655 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 20736 20736 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 21717 21717 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 22250 22250 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 27566 27566 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 31601 31601 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 40488 40488 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold110 SAMTools SNP 40505 40505 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold110 SAMTools SNP 43964 43964 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C239:99 scaffold110 SAMTools SNP 43975 43975 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C134:99 scaffold110 SAMTools SNP 44190 44190 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold110 SAMTools SNP 44529 44529 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.00018%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold110 SAMTools SNP 44534 44534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold110 SAMTools SNP 45149 45149 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold110 SAMTools SNP 45964 45964 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C26%2C37%2C62%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00024%2C1.5e-140%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold110 SAMTools SNP 46318 46318 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C38%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold110 SAMTools SNP 46357 46357 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C49%2C7%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 46375 46375 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C67%2C5%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 47940 47940 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C1%2C11%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold110 SAMTools SNP 48790 48790 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold110 SAMTools SNP 50596 50596 42.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold110 SAMTools SNP 51763 51763 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 51875 51875 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold110 SAMTools SNP 51877 51877 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold110 SAMTools SNP 60127 60127 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.11%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 60802 60802 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.16%2C2.8e-17%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C28:31 scaffold110 SAMTools SNP 76194 76194 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 100074 100074 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C26:29 scaffold110 SAMTools SNP 100832 100832 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold110 SAMTools SNP 101605 101605 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.57%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold110 SAMTools SNP 101611 101611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold110 SAMTools SNP 101641 101641 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold110 SAMTools SNP 102109 102109 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C16%2C65%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 102795 102795 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C244%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold110 SAMTools SNP 103490 103490 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C164%2C19%2C155%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 103551 103551 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.063%2C0.0081%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold110 SAMTools SNP 106667 106667 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C99%2C0:99 scaffold110 SAMTools SNP 106671 106671 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C99%2C0:99 scaffold110 SAMTools SNP 107922 107922 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold110 SAMTools SNP 108353 108353 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold110 SAMTools SNP 108368 108368 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold110 SAMTools SNP 108437 108437 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C136:99 scaffold110 SAMTools SNP 109140 109140 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.079%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold110 SAMTools SNP 109179 109179 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 111113 111113 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 111536 111536 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold110 SAMTools SNP 111653 111653 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold110 SAMTools SNP 112117 112117 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold110 SAMTools SNP 112142 112142 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold110 SAMTools SNP 112454 112454 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C212:99 scaffold110 SAMTools SNP 112508 112508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold110 SAMTools SNP 112715 112715 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C8%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold110 SAMTools SNP 112770 112770 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold110 SAMTools SNP 113302 113302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold110 SAMTools SNP 115163 115163 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold110 SAMTools SNP 115329 115329 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 147885 147885 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold110 SAMTools SNP 149320 149320 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold110 SAMTools SNP 153549 153549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 159270 159270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold110 SAMTools SNP 159309 159309 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold110 SAMTools SNP 159315 159315 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold110 SAMTools SNP 160634 160634 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 161162 161162 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C165:99 scaffold110 SAMTools SNP 161172 161172 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold110 SAMTools SNP 161180 161180 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.32%2C1%2C7.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold110 SAMTools SNP 161899 161899 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold110 SAMTools SNP 161948 161948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold110 SAMTools SNP 162722 162722 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold110 SAMTools SNP 162770 162770 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold110 SAMTools SNP 162773 162773 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold110 SAMTools SNP 163548 163548 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold110 SAMTools SNP 163581 163581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold110 SAMTools SNP 163641 163641 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold110 SAMTools SNP 163701 163701 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold110 SAMTools SNP 164361 164361 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold110 SAMTools SNP 164754 164754 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold110 SAMTools SNP 164813 164813 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.015%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold110 SAMTools SNP 164825 164825 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.17%2C0.023%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold110 SAMTools SNP 164848 164848 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 165277 165277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold110 SAMTools SNP 166634 166634 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold110 SAMTools SNP 166667 166667 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold110 SAMTools SNP 166748 166748 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold110 SAMTools SNP 166754 166754 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold110 SAMTools SNP 166790 166790 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold110 SAMTools SNP 167864 167864 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold110 SAMTools SNP 168355 168355 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C14%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.5%2C0.00027%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold110 SAMTools SNP 168379 168379 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.3%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold110 SAMTools SNP 168394 168394 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold110 SAMTools SNP 168402 168402 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1.4e-12%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 169403 169403 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 169415 169415 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.38%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 169421 169421 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C6%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.063%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold110 SAMTools SNP 169941 169941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold110 SAMTools SNP 169965 169965 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C4.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold110 SAMTools SNP 169977 169977 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold110 SAMTools SNP 169983 169983 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.019%2C0.47%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold110 SAMTools SNP 172049 172049 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold110 SAMTools SNP 173305 173305 24.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1100 SAMTools SNP 379 379 20.1 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1100 SAMTools SNP 605 605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1100 SAMTools SNP 843 843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C52%2C3%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 1514 1514 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.21%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1100 SAMTools SNP 1588 1588 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1100 SAMTools SNP 1595 1595 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C2%2C13%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.44%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1100 SAMTools SNP 2369 2369 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C2%2C48%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 4196 4196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C35%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 18840 18840 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.13%2C0.095%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1100 SAMTools SNP 19458 19458 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 20054 20054 176 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1100 SAMTools SNP 20483 20483 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.33%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 20939 20939 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.017%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1100 SAMTools SNP 20981 20981 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.02%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C236:99 scaffold1100 SAMTools SNP 23393 23393 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold1100 SAMTools SNP 24601 24601 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0014%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C26:29 scaffold1100 SAMTools SNP 25387 25387 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D0.25%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1100 SAMTools SNP 25432 25432 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1100 SAMTools SNP 26133 26133 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C35:36 scaffold1100 SAMTools SNP 27635 27635 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1100 SAMTools SNP 29308 29308 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1100 SAMTools SNP 31074 31074 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1100 SAMTools SNP 31424 31424 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1100 SAMTools SNP 34896 34896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1100 SAMTools SNP 34900 34900 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1100 SAMTools SNP 38329 38329 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C255%2C0:99 scaffold1100 SAMTools SNP 38563 38563 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D924%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D499%2C17%2C317%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C4e-225%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 38764 38764 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C3%2C22%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.5%2C2.6e-55%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1100 SAMTools SNP 39130 39130 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C79%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C253%2C0:99 scaffold1100 SAMTools SNP 112000 112000 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1100 SAMTools SNP 112583 112583 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1100 SAMTools SNP 120017 120017 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.1%2C0.00057%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold1100 SAMTools SNP 121883 121883 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold1100 SAMTools SNP 122531 122531 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1100 SAMTools SNP 122973 122973 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1100 SAMTools SNP 123027 123027 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.14%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 123442 123442 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold1100 SAMTools SNP 123458 123458 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1100 SAMTools SNP 123494 123494 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C200:99 scaffold1100 SAMTools SNP 123509 123509 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1100 SAMTools SNP 123515 123515 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1100 SAMTools SNP 124037 124037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1100 SAMTools SNP 124374 124374 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1100 SAMTools SNP 124419 124419 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C48%2C0:93 scaffold1100 SAMTools SNP 124425 124425 86 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C45%2C0%2C94%2C8%2C91:87 scaffold1100 SAMTools SNP 124845 124845 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C5.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C194:99 scaffold1100 SAMTools SNP 132121 132121 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1100 SAMTools SNP 132253 132253 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1100 SAMTools SNP 132278 132278 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1100 SAMTools SNP 132473 132473 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.34%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1100 SAMTools SNP 132648 132648 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold1100 SAMTools SNP 132677 132677 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1100 SAMTools SNP 134293 134293 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1100 SAMTools SNP 134294 134294 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1100 SAMTools SNP 137028 137028 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C195:47 scaffold1100 SAMTools SNP 138898 138898 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1100 SAMTools SNP 139706 139706 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1100 SAMTools SNP 139924 139924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 139973 139973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 140302 140302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1100 SAMTools SNP 141727 141727 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1100 SAMTools SNP 143127 143127 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.2%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold1100 SAMTools SNP 143148 143148 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold1100 SAMTools SNP 143175 143175 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.13%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1100 SAMTools SNP 144122 144122 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C17%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1100 SAMTools SNP 144150 144150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1100 SAMTools SNP 145498 145498 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1100 SAMTools SNP 146782 146782 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1100 SAMTools SNP 146788 146788 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1100 SAMTools SNP 151913 151913 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.068%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1100 SAMTools SNP 151929 151929 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.38%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1100 SAMTools SNP 153059 153059 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1100 SAMTools SNP 153249 153249 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1100 SAMTools SNP 153365 153365 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1100 SAMTools SNP 156567 156567 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1100 SAMTools SNP 158413 158413 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1100 SAMTools SNP 159448 159448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.26%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 160274 160274 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.31%2C0.15%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1100 SAMTools SNP 160288 160288 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1100 SAMTools SNP 171445 171445 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1100 SAMTools SNP 171448 171448 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.45%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C166:34 scaffold1100 SAMTools SNP 172379 172379 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C182%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1100 SAMTools SNP 172612 172612 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C151%2C1%2C145%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 174099 174099 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C66%2C11%2C53%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.064%2C5.9e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1100 SAMTools SNP 174645 174645 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1100 SAMTools SNP 174756 174756 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold1100 SAMTools SNP 174788 174788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold1100 SAMTools SNP 175484 175484 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C0.42%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold1100 SAMTools SNP 175521 175521 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1100 SAMTools SNP 175522 175522 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1100 SAMTools SNP 175777 175777 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1100 SAMTools SNP 175783 175783 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1100 SAMTools SNP 175840 175840 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1100 SAMTools SNP 176431 176431 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C40%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 176434 176434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C37%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 176445 176445 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C13%2C35%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 176487 176487 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C13%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 176505 176505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1100 SAMTools SNP 176862 176862 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.65%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1100 SAMTools SNP 176879 176879 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.31%2C0.45%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold1100 SAMTools SNP 176904 176904 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.1e-14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C194:57 scaffold1100 SAMTools SNP 176969 176969 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1100 SAMTools SNP 177591 177591 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1100 SAMTools SNP 177765 177765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C16%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1100 SAMTools SNP 177980 177980 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C17%2C6%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.18%2C3e-15%2C1%2C9.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1100 SAMTools SNP 178019 178019 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C24%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1100 SAMTools SNP 178415 178415 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C47%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1100 SAMTools SNP 178457 178457 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C2.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C227:50 scaffold1100 SAMTools SNP 178474 178474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1100 SAMTools SNP 178499 178499 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1100 SAMTools SNP 178933 178933 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1100 SAMTools SNP 178946 178946 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1100 SAMTools SNP 179722 179722 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C154:72 scaffold1100 SAMTools SNP 191888 191888 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2.4e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C178:52 scaffold1100 SAMTools SNP 193398 193398 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1100 SAMTools SNP 193443 193443 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1100 SAMTools SNP 193458 193458 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1100 SAMTools SNP 197410 197410 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1100 SAMTools SNP 197413 197413 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1100 SAMTools SNP 197421 197421 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1100 SAMTools SNP 199262 199262 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1100 SAMTools SNP 202799 202799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1100 SAMTools SNP 203890 203890 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold1100 SAMTools SNP 204304 204304 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1100 SAMTools SNP 211366 211366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 3214 3214 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1101 SAMTools SNP 3243 3243 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1101 SAMTools SNP 3316 3316 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C71:74 scaffold1101 SAMTools SNP 33690 33690 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1101 SAMTools SNP 37070 37070 12 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D15%3BFQ%3D-33%3BPV4%3D0.47%2C0.049%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1101 SAMTools SNP 37728 37728 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1101 SAMTools SNP 37770 37770 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1101 SAMTools SNP 54018 54018 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C102%2C0:99 scaffold1101 SAMTools SNP 60264 60264 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C42:31 scaffold1101 SAMTools SNP 69433 69433 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C15%2C0:27 scaffold1101 SAMTools SNP 105853 105853 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C88:28 scaffold1101 SAMTools SNP 105943 105943 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 105954 105954 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 106186 106186 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1101 SAMTools SNP 106590 106590 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.028%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C238:99 scaffold1101 SAMTools SNP 108453 108453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1101 SAMTools SNP 108475 108475 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1101 SAMTools SNP 108618 108618 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1101 SAMTools SNP 108628 108628 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1101 SAMTools SNP 111524 111524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C21%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1101 SAMTools SNP 111669 111669 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C242:37 scaffold1101 SAMTools SNP 113552 113552 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1101 SAMTools SNP 113979 113979 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold1101 SAMTools SNP 120718 120718 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold1101 SAMTools SNP 172096 172096 55.8 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C13%2C7%2C86%2C0%2C83:10 scaffold1101 SAMTools SNP 184076 184076 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C211:92 scaffold1101 SAMTools SNP 184116 184116 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.19%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold1101 SAMTools SNP 185296 185296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1101 SAMTools SNP 185750 185750 17.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1101 SAMTools SNP 185818 185818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1101 SAMTools SNP 186135 186135 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1101 SAMTools SNP 186142 186142 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold1101 SAMTools SNP 186945 186945 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C34%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1101 SAMTools SNP 186956 186956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C31%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1101 SAMTools SNP 187428 187428 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C102%2C0:99 scaffold1101 SAMTools SNP 187512 187512 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1101 SAMTools SNP 189193 189193 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C36%2C0:69 scaffold1101 SAMTools SNP 189262 189262 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1101 SAMTools SNP 189265 189265 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1101 SAMTools SNP 189274 189274 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1101 SAMTools SNP 189763 189763 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 189793 189793 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 196772 196772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1101 SAMTools SNP 210220 210220 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1101 SAMTools SNP 271415 271415 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 271897 271897 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 282431 282431 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1101 SAMTools SNP 282655 282655 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1101 SAMTools SNP 282918 282918 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1101 SAMTools SNP 283666 283666 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1101 SAMTools SNP 295148 295148 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1101 SAMTools SNP 295946 295946 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1101 SAMTools SNP 296238 296238 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1101 SAMTools SNP 302535 302535 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 302684 302684 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 324003 324003 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1101 SAMTools SNP 362570 362570 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 362583 362583 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1101 SAMTools SNP 363530 363530 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 366667 366667 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1101 SAMTools SNP 366693 366693 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1101 SAMTools SNP 366951 366951 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1101 SAMTools SNP 366980 366980 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1101 SAMTools SNP 367032 367032 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1101 SAMTools SNP 367033 367033 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1101 SAMTools SNP 368523 368523 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 368801 368801 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1101 SAMTools SNP 368830 368830 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1101 SAMTools SNP 372563 372563 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C41:43 scaffold1101 SAMTools SNP 372602 372602 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1101 SAMTools SNP 372618 372618 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1101 SAMTools SNP 376210 376210 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1101 SAMTools SNP 378619 378619 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C123:30 scaffold1101 SAMTools SNP 379542 379542 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1101 SAMTools SNP 382687 382687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1101 SAMTools SNP 384420 384420 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1101 SAMTools SNP 385166 385166 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1101 SAMTools SNP 388705 388705 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1101 SAMTools SNP 388724 388724 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1101 SAMTools SNP 389137 389137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1101 SAMTools SNP 389943 389943 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold1101 SAMTools SNP 390022 390022 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0022%2C4.9e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C166:41 scaffold1101 SAMTools SNP 390402 390402 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C105%2C0:99 scaffold1101 SAMTools SNP 390415 390415 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C4.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1101 SAMTools SNP 391678 391678 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C94:47 scaffold1101 SAMTools SNP 392112 392112 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C120%2C0:99 scaffold1101 SAMTools SNP 402312 402312 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold1101 SAMTools SNP 409198 409198 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C63%2C0:99 scaffold1101 SAMTools SNP 410762 410762 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1101 SAMTools SNP 411461 411461 46.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1101 SAMTools SNP 411559 411559 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C54%2C0:99 scaffold1101 SAMTools SNP 416791 416791 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 416794 416794 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 416974 416974 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1101 SAMTools SNP 416995 416995 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1101 SAMTools SNP 416998 416998 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1101 SAMTools SNP 417365 417365 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold1101 SAMTools SNP 417368 417368 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1101 SAMTools SNP 417377 417377 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.067%2C0.044%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C214:31 scaffold1101 SAMTools SNP 417422 417422 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.066%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1101 SAMTools SNP 417793 417793 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1101 SAMTools SNP 417817 417817 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1101 SAMTools SNP 417835 417835 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1101 SAMTools SNP 418984 418984 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1101 SAMTools SNP 418989 418989 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1101 SAMTools SNP 419016 419016 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1101 SAMTools SNP 419218 419218 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C145:77 scaffold1101 SAMTools SNP 419245 419245 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.091%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 419266 419266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 419281 419281 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 419655 419655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 419670 419670 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C215:99 scaffold1101 SAMTools SNP 419745 419745 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.58%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C250:99 scaffold1101 SAMTools SNP 419775 419775 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold1101 SAMTools SNP 420081 420081 100 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C94%2C85%2C133%2C0%2C127:16 scaffold1101 SAMTools SNP 420316 420316 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1101 SAMTools SNP 420340 420340 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C18:21 scaffold1101 SAMTools SNP 420349 420349 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold1101 SAMTools SNP 420597 420597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1101 SAMTools SNP 420950 420950 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1101 SAMTools SNP 421875 421875 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 421881 421881 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 422323 422323 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.06%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C240:99 scaffold1101 SAMTools SNP 422335 422335 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 422344 422344 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 422658 422658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 422853 422853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 422874 422874 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C244:99 scaffold1101 SAMTools SNP 422898 422898 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 423747 423747 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 423753 423753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 424960 424960 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 424981 424981 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1101 SAMTools SNP 425014 425014 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.48%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold1101 SAMTools SNP 425023 425023 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold1101 SAMTools SNP 425035 425035 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1101 SAMTools SNP 425053 425053 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1101 SAMTools SNP 425323 425323 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C8%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.69%2C1.1e-40%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1101 SAMTools SNP 425461 425461 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 425908 425908 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C23%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C2.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C223:99 scaffold1101 SAMTools SNP 427210 427210 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1101 SAMTools SNP 427599 427599 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 428712 428712 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.19%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1101 SAMTools SNP 429271 429271 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1101 SAMTools SNP 429323 429323 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold1101 SAMTools SNP 430189 430189 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C5.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1101 SAMTools SNP 430228 430228 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.061%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C105:99 scaffold1101 SAMTools SNP 430795 430795 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C174:99 scaffold1101 SAMTools SNP 430813 430813 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1101 SAMTools SNP 430846 430846 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1101 SAMTools SNP 431264 431264 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.089%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1101 SAMTools SNP 431282 431282 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.092%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold1101 SAMTools SNP 432128 432128 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1101 SAMTools SNP 432134 432134 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1101 SAMTools SNP 434434 434434 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1101 SAMTools SNP 434455 434455 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.031%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C233:99 scaffold1101 SAMTools SNP 440544 440544 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.44%2C3.4e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C207:99 scaffold1101 SAMTools SNP 441363 441363 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1101 SAMTools SNP 441432 441432 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1101 SAMTools SNP 441468 441468 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1101 SAMTools SNP 442856 442856 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1101 SAMTools SNP 442894 442894 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1101 SAMTools SNP 443184 443184 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 443343 443343 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 443364 443364 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1101 SAMTools SNP 443981 443981 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C79:81 scaffold1101 SAMTools SNP 444568 444568 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1101 SAMTools SNP 446978 446978 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 450834 450834 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1101 SAMTools SNP 451846 451846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.17%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1101 SAMTools SNP 451903 451903 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C4.3e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C230:39 scaffold1101 SAMTools SNP 451921 451921 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.057%2C0.11%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1101 SAMTools SNP 451948 451948 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1101 SAMTools SNP 452863 452863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1101 SAMTools SNP 452948 452948 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 453320 453320 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 454130 454130 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C243:99 scaffold1101 SAMTools SNP 454141 454141 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C244:99 scaffold1101 SAMTools SNP 454300 454300 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1101 SAMTools SNP 456960 456960 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.083%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1101 SAMTools SNP 457371 457371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1101 SAMTools SNP 457704 457704 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C10%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D3.4e-06%2C1.8e-46%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1101 SAMTools SNP 457769 457769 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C255%2C0:99 scaffold1101 SAMTools SNP 457938 457938 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1101 SAMTools SNP 458059 458059 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C197%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold1101 SAMTools SNP 458640 458640 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C30%2C0:57 scaffold1101 SAMTools SNP 458652 458652 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold1101 SAMTools SNP 458964 458964 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C235:44 scaffold1101 SAMTools SNP 459060 459060 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1101 SAMTools SNP 459324 459324 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C13%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C211%2C0:99 scaffold1101 SAMTools SNP 459330 459330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C14%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1101 SAMTools SNP 459480 459480 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1101 SAMTools SNP 467356 467356 23.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1101 SAMTools SNP 469377 469377 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C9.5e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C145:99 scaffold1101 SAMTools SNP 469442 469442 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1101 SAMTools SNP 470455 470455 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C14%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1101 SAMTools SNP 471184 471184 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 471237 471237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C38%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1101 SAMTools SNP 471918 471918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 471932 471932 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 471945 471945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C30%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 472955 472955 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1101 SAMTools SNP 473003 473003 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C20%2C29%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1101 SAMTools SNP 473657 473657 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1101 SAMTools SNP 474492 474492 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 474709 474709 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1101 SAMTools SNP 477793 477793 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 478495 478495 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1101 SAMTools SNP 478540 478540 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1101 SAMTools SNP 480376 480376 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.013%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1101 SAMTools SNP 480377 480377 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1101 SAMTools SNP 480386 480386 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1101 SAMTools SNP 480395 480395 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1101 SAMTools SNP 480626 480626 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1101 SAMTools SNP 480680 480680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold1101 SAMTools SNP 481571 481571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold1101 SAMTools SNP 481664 481664 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1101 SAMTools SNP 482123 482123 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1101 SAMTools SNP 482145 482145 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 482590 482590 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 483213 483213 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1101 SAMTools SNP 483225 483225 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1101 SAMTools SNP 483244 483244 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1101 SAMTools SNP 484192 484192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1101 SAMTools SNP 484214 484214 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1101 SAMTools SNP 484787 484787 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C8%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1101 SAMTools SNP 484858 484858 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1101 SAMTools SNP 493116 493116 52.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1101 SAMTools SNP 512657 512657 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1101 SAMTools SNP 512688 512688 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1101 SAMTools SNP 522076 522076 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1101 SAMTools SNP 522121 522121 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1101 SAMTools SNP 522755 522755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1101 SAMTools SNP 522831 522831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1101 SAMTools SNP 523358 523358 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 528123 528123 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1101 SAMTools SNP 534404 534404 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1101 SAMTools SNP 540417 540417 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1101 SAMTools SNP 540444 540444 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1101 SAMTools SNP 540471 540471 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1101 SAMTools SNP 541523 541523 69.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1101 SAMTools SNP 541528 541528 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1101 SAMTools SNP 600641 600641 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 600652 600652 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1101 SAMTools SNP 602717 602717 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 619491 619491 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C201:28 scaffold1101 SAMTools SNP 619997 619997 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1101 SAMTools SNP 620009 620009 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C11%2C10%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.11%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1101 SAMTools SNP 620044 620044 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1101 SAMTools SNP 620045 620045 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1101 SAMTools SNP 621401 621401 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.38%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1101 SAMTools SNP 634262 634262 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1101 SAMTools SNP 693623 693623 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 695130 695130 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 695212 695212 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 699420 699420 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 738414 738414 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1101 SAMTools SNP 738450 738450 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.051%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1101 SAMTools SNP 738770 738770 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.23%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1101 SAMTools SNP 738804 738804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C15%2C9%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold1101 SAMTools SNP 739333 739333 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1101 SAMTools SNP 743816 743816 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1101 SAMTools SNP 744162 744162 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1101 SAMTools SNP 766532 766532 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1103 SAMTools SNP 601 601 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1103 SAMTools SNP 675 675 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1103 SAMTools SNP 818 818 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C30%2C0:57 scaffold1103 SAMTools SNP 1049 1049 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1103 SAMTools SNP 2947 2947 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1103 SAMTools SNP 3281 3281 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1103 SAMTools SNP 27268 27268 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1103 SAMTools SNP 29387 29387 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00074%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1103 SAMTools SNP 49785 49785 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold1103 SAMTools SNP 75200 75200 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.00064%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C145:97 scaffold1103 SAMTools SNP 83576 83576 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C239:99 scaffold1103 SAMTools SNP 84649 84649 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.11%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1103 SAMTools SNP 87921 87921 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C120%2C0:99 scaffold1103 SAMTools SNP 88260 88260 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C29%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C58%2C0:99 scaffold1103 SAMTools SNP 90412 90412 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1103 SAMTools SNP 91473 91473 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1103 SAMTools SNP 91526 91526 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold1103 SAMTools SNP 91553 91553 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold1103 SAMTools SNP 93303 93303 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1103 SAMTools SNP 93515 93515 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1103 SAMTools SNP 94191 94191 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1103 SAMTools SNP 96758 96758 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1103 SAMTools SNP 104236 104236 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C36%2C0:69 scaffold1104 SAMTools SNP 5600 5600 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1104 SAMTools SNP 18656 18656 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C185%2C15%2C49%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.18%2C0.00029%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1104 SAMTools SNP 19228 19228 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C94%2C26%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 19294 19294 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C40%2C94%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 19514 19514 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C56%2C25%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 21357 21357 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C29%2C97%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 21495 21495 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 21951 21951 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C105%2C126%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 24654 24654 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C37%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C2.7e-53%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1104 SAMTools SNP 32487 32487 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1104 SAMTools SNP 35193 35193 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1104 SAMTools SNP 35916 35916 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C72%2C0:99 scaffold1104 SAMTools SNP 37255 37255 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C58%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C220%2C0:99 scaffold1104 SAMTools SNP 38898 38898 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D30%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C33%2C0:63 scaffold1104 SAMTools SNP 38951 38951 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D23%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1104 SAMTools SNP 61293 61293 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 61394 61394 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1104 SAMTools SNP 61485 61485 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1104 SAMTools SNP 62454 62454 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1104 SAMTools SNP 62476 62476 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1104 SAMTools SNP 62485 62485 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1104 SAMTools SNP 62502 62502 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1104 SAMTools SNP 62807 62807 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 66793 66793 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C0.28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1104 SAMTools SNP 67049 67049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1104 SAMTools SNP 70559 70559 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1104 SAMTools SNP 70578 70578 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1104 SAMTools SNP 71055 71055 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1104 SAMTools SNP 71060 71060 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1104 SAMTools SNP 81028 81028 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1104 SAMTools SNP 98330 98330 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.072%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 99423 99423 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1104 SAMTools SNP 99441 99441 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1104 SAMTools SNP 99529 99529 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 99695 99695 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 101611 101611 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1104 SAMTools SNP 101626 101626 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 101866 101866 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C45%2C0:80 scaffold1104 SAMTools SNP 102034 102034 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 102896 102896 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 104063 104063 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 105109 105109 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 107817 107817 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D30%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C66%2C0:99 scaffold1104 SAMTools SNP 108709 108709 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C37%2C16%2C0%3BMQ%3D32%3BFQ%3D125%3BPV4%3D4.7e-08%2C0.0078%2C1%2C1.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1104 SAMTools SNP 108823 108823 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C16%2C54%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.52%2C1.7e-51%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 110968 110968 86.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D17%2C1%2C6%2C2%3BMQ%3D20%3BFQ%3D-40%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C13%2C0:23 scaffold1104 SAMTools SNP 111501 111501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 113194 113194 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C65%2C0%2C60%3BMQ%3D33%3BFQ%3D139%3BPV4%3D5.1e-09%2C0.44%2C0.00028%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1104 SAMTools SNP 113757 113757 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C23%2C0%2C3%3BMQ%3D16%3BFQ%3D-52%3BPV4%3D1%2C1.2e-05%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C25%2C0:39 scaffold1104 SAMTools SNP 118068 118068 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D17%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C0:4 scaffold1104 SAMTools SNP 118101 118101 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D43%3BFQ%3D-50%3BPV4%3D0.27%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C23%2C0:43 scaffold1104 SAMTools SNP 118624 118624 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 119497 119497 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C165:99 scaffold1104 SAMTools SNP 119503 119503 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1104 SAMTools SNP 119719 119719 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C24%2C0:45 scaffold1104 SAMTools SNP 120447 120447 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C24%2C0:45 scaffold1104 SAMTools SNP 120498 120498 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1104 SAMTools SNP 120576 120576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C5%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1104 SAMTools SNP 121206 121206 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C65%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1104 SAMTools SNP 121426 121426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 121504 121504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1104 SAMTools SNP 122372 122372 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1104 SAMTools SNP 123512 123512 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1104 SAMTools SNP 123536 123536 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1104 SAMTools SNP 124097 124097 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1104 SAMTools SNP 124135 124135 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 124906 124906 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1104 SAMTools SNP 125883 125883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 125897 125897 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1104 SAMTools SNP 130302 130302 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 136115 136115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1104 SAMTools SNP 144205 144205 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1104 SAMTools SNP 144337 144337 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C201:99 scaffold1104 SAMTools SNP 144354 144354 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C36%2C0:69 scaffold1104 SAMTools SNP 144406 144406 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1104 SAMTools SNP 144451 144451 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1104 SAMTools SNP 155138 155138 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1104 SAMTools SNP 155153 155153 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C29:32 scaffold1104 SAMTools SNP 155203 155203 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 174796 174796 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold1104 SAMTools SNP 174838 174838 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1104 SAMTools SNP 176927 176927 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 177016 177016 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C76:43 scaffold1104 SAMTools SNP 181695 181695 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 182220 182220 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 182240 182240 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1104 SAMTools SNP 182768 182768 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1104 SAMTools SNP 183876 183876 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 184845 184845 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.36%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 191663 191663 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.22%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1104 SAMTools SNP 192458 192458 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 192563 192563 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 194348 194348 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1104 SAMTools SNP 195298 195298 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C200:99 scaffold1104 SAMTools SNP 202242 202242 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1104 SAMTools SNP 209155 209155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1104 SAMTools SNP 209470 209470 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.55%2C1.3e-05%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1104 SAMTools SNP 209838 209838 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1104 SAMTools SNP 209874 209874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 209886 209886 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1104 SAMTools SNP 210227 210227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1104 SAMTools SNP 210264 210264 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1104 SAMTools SNP 210990 210990 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1104 SAMTools SNP 217636 217636 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 217997 217997 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 218029 218029 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 222024 222024 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 222799 222799 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 225763 225763 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1104 SAMTools SNP 226088 226088 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1104 SAMTools SNP 227890 227890 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C27%2C0:51 scaffold1104 SAMTools SNP 229611 229611 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 229619 229619 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 238326 238326 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 238870 238870 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 242409 242409 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 261363 261363 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1104 SAMTools SNP 262049 262049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 262068 262068 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 263010 263010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 263326 263326 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1104 SAMTools SNP 264366 264366 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C219:99 scaffold1104 SAMTools SNP 264408 264408 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1104 SAMTools SNP 264480 264480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 265938 265938 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1104 SAMTools SNP 265953 265953 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.033%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1104 SAMTools SNP 266171 266171 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1104 SAMTools SNP 266190 266190 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C11%2C12%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0022%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1104 SAMTools SNP 266325 266325 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1104 SAMTools SNP 268369 268369 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1104 SAMTools SNP 268392 268392 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 268941 268941 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1104 SAMTools SNP 268972 268972 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 269066 269066 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.2%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C76:79 scaffold1104 SAMTools SNP 269500 269500 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.072%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C221:99 scaffold1104 SAMTools SNP 269705 269705 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.42%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1104 SAMTools SNP 270080 270080 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C193:99 scaffold1104 SAMTools SNP 270408 270408 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1104 SAMTools SNP 271774 271774 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.0011%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C197:92 scaffold1104 SAMTools SNP 272007 272007 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 272766 272766 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 272767 272767 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1104 SAMTools SNP 272777 272777 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1104 SAMTools SNP 272870 272870 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.013%2C0.04%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1104 SAMTools SNP 272891 272891 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1104 SAMTools SNP 273015 273015 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.13%2C0.1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1104 SAMTools SNP 274781 274781 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1104 SAMTools SNP 276924 276924 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 277830 277830 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1104 SAMTools SNP 278141 278141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 278778 278778 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1104 SAMTools SNP 279246 279246 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 279468 279468 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 280391 280391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1104 SAMTools SNP 280554 280554 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1104 SAMTools SNP 280919 280919 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1104 SAMTools SNP 284178 284178 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 284217 284217 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 284602 284602 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1104 SAMTools SNP 284937 284937 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1104 SAMTools SNP 284940 284940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1104 SAMTools SNP 284952 284952 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1104 SAMTools SNP 286017 286017 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1104 SAMTools SNP 286080 286080 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1104 SAMTools SNP 286084 286084 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1104 SAMTools SNP 286279 286279 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1104 SAMTools SNP 286363 286363 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C30%2C0:57 scaffold1104 SAMTools SNP 286378 286378 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1104 SAMTools SNP 287147 287147 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 287186 287186 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 287192 287192 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 287611 287611 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 288227 288227 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 288698 288698 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1104 SAMTools SNP 290258 290258 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.51%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C236:99 scaffold1104 SAMTools SNP 290475 290475 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C239:53 scaffold1104 SAMTools SNP 290796 290796 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1104 SAMTools SNP 290814 290814 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1104 SAMTools SNP 290862 290862 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.11%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C176:99 scaffold1104 SAMTools SNP 291382 291382 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 291865 291865 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1104 SAMTools SNP 292037 292037 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1104 SAMTools SNP 293922 293922 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 293940 293940 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 294082 294082 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold1104 SAMTools SNP 294145 294145 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1104 SAMTools SNP 294564 294564 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1104 SAMTools SNP 294813 294813 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold1104 SAMTools SNP 295202 295202 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1104 SAMTools SNP 295234 295234 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 295253 295253 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1104 SAMTools SNP 295286 295286 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1104 SAMTools SNP 295546 295546 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold1104 SAMTools SNP 296299 296299 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1104 SAMTools SNP 296307 296307 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1104 SAMTools SNP 296589 296589 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1104 SAMTools SNP 296871 296871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1104 SAMTools SNP 297713 297713 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 298289 298289 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1104 SAMTools SNP 301777 301777 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D38.4%3BPV4%3D0.44%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C66:68 scaffold1104 SAMTools SNP 304348 304348 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 304925 304925 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C15%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.17%2C0.048%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1104 SAMTools SNP 305083 305083 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C74%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C4.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 305134 305134 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C55%2C2%2C29%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.71%2C3.2e-33%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1104 SAMTools SNP 305197 305197 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C160:99 scaffold1104 SAMTools SNP 305212 305212 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.093%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C236:96 scaffold1104 SAMTools SNP 305230 305230 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1104 SAMTools SNP 305927 305927 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1104 SAMTools SNP 306537 306537 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C60%2C0:99 scaffold1104 SAMTools SNP 311947 311947 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 311967 311967 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1104 SAMTools SNP 314017 314017 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1104 SAMTools SNP 315217 315217 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.29%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1104 SAMTools SNP 315299 315299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C0.00077%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 316648 316648 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.072%2C8.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C165:73 scaffold1104 SAMTools SNP 320158 320158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C35%2C56%3BMQ%3D50%3BFQ%3D-251%3BPV4%3D1%2C0.016%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C0:99 scaffold1104 SAMTools SNP 320165 320165 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C35%2C3%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1104 SAMTools SNP 320860 320860 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 321535 321535 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1104 SAMTools SNP 321605 321605 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C71%2C0%2C19%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1.8e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1104 SAMTools SNP 322806 322806 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.65%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1104 SAMTools SNP 328171 328171 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C37%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C6.5e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 328785 328785 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C17%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.7%2C4.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1104 SAMTools SNP 328935 328935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C254%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 333011 333011 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 340129 340129 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 341571 341571 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1104 SAMTools SNP 341807 341807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 342201 342201 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 342452 342452 94 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C128%2C254%2C0%2C203:45 scaffold1104 SAMTools SNP 342592 342592 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 342629 342629 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C70%2C2%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 343281 343281 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C233:69 scaffold1104 SAMTools SNP 343347 343347 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0126%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1104 SAMTools SNP 343900 343900 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1104 SAMTools SNP 343910 343910 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1104 SAMTools SNP 345054 345054 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1104 SAMTools SNP 345097 345097 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.085%2C0.0014%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1104 SAMTools SNP 346737 346737 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0012%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1104 SAMTools SNP 347536 347536 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold1104 SAMTools SNP 347784 347784 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C39%2C0:75 scaffold1104 SAMTools SNP 353628 353628 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.013%2C2.6e-11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1104 SAMTools SNP 353947 353947 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C0%2C14%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.02%2C1.3e-12%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1104 SAMTools SNP 354693 354693 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 355050 355050 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C15%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1104 SAMTools SNP 355548 355548 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0022%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1104 SAMTools SNP 358200 358200 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C11%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1104 SAMTools SNP 358406 358406 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1104 SAMTools SNP 358928 358928 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1104 SAMTools SNP 359282 359282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 362469 362469 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1104 SAMTools SNP 362480 362480 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1104 SAMTools SNP 364902 364902 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.39%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1104 SAMTools SNP 367266 367266 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1104 SAMTools SNP 367776 367776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 368347 368347 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C6e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 368362 368362 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1104 SAMTools SNP 369431 369431 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C20%2C16%2C4%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.17%2C0.0014%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1104 SAMTools SNP 372304 372304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1104 SAMTools SNP 372971 372971 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.4e-10%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1104 SAMTools SNP 373393 373393 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.46%2C7.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C102:40 scaffold1104 SAMTools SNP 373697 373697 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1104 SAMTools SNP 375341 375341 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1104 SAMTools SNP 375916 375916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C5%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1104 SAMTools SNP 375968 375968 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1104 SAMTools SNP 376253 376253 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1104 SAMTools SNP 376406 376406 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1104 SAMTools SNP 376423 376423 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 376427 376427 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 376466 376466 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1104 SAMTools SNP 377314 377314 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 377326 377326 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 378929 378929 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1104 SAMTools SNP 381345 381345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1104 SAMTools SNP 381505 381505 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold1104 SAMTools SNP 385462 385462 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C145%2C20%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 385739 385739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C127%3BMQ%3D36%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 386052 386052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 386064 386064 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 386476 386476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C3%2C66%2C172%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.0082%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 386527 386527 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C91%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 387484 387484 9.51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D25%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C63%2C0:59 scaffold1104 SAMTools SNP 387562 387562 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C16%2C4%2C4%3BMQ%3D45%3BFQ%3D47%3BPV4%3D0.19%2C0.36%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1104 SAMTools SNP 387981 387981 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C44%2C10%2C9%3BMQ%3D39%3BFQ%3D120%3BPV4%3D0.056%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1104 SAMTools SNP 388065 388065 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C38%2C38%2C7%3BMQ%3D47%3BFQ%3D26%3BPV4%3D0.41%2C1%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1104 SAMTools SNP 388320 388320 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C125%2C14%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1.8e-08%2C0.0058%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 388552 388552 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C51%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1104 SAMTools SNP 388587 388587 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C61%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C0.25%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 388602 388602 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 388757 388757 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C28%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1104 SAMTools SNP 388990 388990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 389101 389101 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 389292 389292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1104 SAMTools SNP 389295 389295 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1104 SAMTools SNP 389304 389304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1104 SAMTools SNP 389532 389532 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C30%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 389923 389923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 390259 390259 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D176%2C104%2C139%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 390695 390695 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C147%2C49%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00085%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 390727 390727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C179%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 395487 395487 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C108%2C0%2C54%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C8.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1104 SAMTools SNP 395521 395521 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C69%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1104 SAMTools SNP 397455 397455 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C34%2C1%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.66%2C7e-05%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1104 SAMTools SNP 397727 397727 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C13%2C26%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.65%2C0.25%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1104 SAMTools SNP 397728 397728 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1104 SAMTools SNP 398160 398160 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1104 SAMTools SNP 398208 398208 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1104 SAMTools SNP 398246 398246 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 398674 398674 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1104 SAMTools SNP 398981 398981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 400204 400204 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1104 SAMTools SNP 400486 400486 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 400504 400504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 400806 400806 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1104 SAMTools SNP 400809 400809 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.46%2C0.11%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C174:66 scaffold1104 SAMTools SNP 401275 401275 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1104 SAMTools SNP 401338 401338 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.089%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1104 SAMTools SNP 401663 401663 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1104 SAMTools SNP 401832 401832 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 401844 401844 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 401938 401938 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1104 SAMTools SNP 401961 401961 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1104 SAMTools SNP 401991 401991 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.48%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1104 SAMTools SNP 402321 402321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1104 SAMTools SNP 402820 402820 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.014%2C1%2C1%2C3.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1104 SAMTools SNP 402851 402851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 403724 403724 47.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold1104 SAMTools SNP 404080 404080 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1104 SAMTools SNP 404305 404305 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 404448 404448 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C21%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1104 SAMTools SNP 404472 404472 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1104 SAMTools SNP 406131 406131 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 409671 409671 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.58%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C236:55 scaffold1104 SAMTools SNP 410836 410836 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 410854 410854 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1104 SAMTools SNP 410895 410895 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C245:99 scaffold1104 SAMTools SNP 411767 411767 157 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.00067%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C220:99 scaffold1104 SAMTools SNP 413958 413958 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C0.039%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C59:62 scaffold1104 SAMTools SNP 413959 413959 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.27%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C115:46 scaffold1104 SAMTools SNP 414243 414243 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C0.25%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1104 SAMTools SNP 414615 414615 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1104 SAMTools SNP 414728 414728 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 414756 414756 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 415109 415109 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1104 SAMTools SNP 415833 415833 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.056%2C0.34%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold1104 SAMTools SNP 416415 416415 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1104 SAMTools SNP 416910 416910 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1104 SAMTools SNP 416931 416931 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1104 SAMTools SNP 417518 417518 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold1104 SAMTools SNP 417566 417566 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.51%2C0.24%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1104 SAMTools SNP 417857 417857 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1104 SAMTools SNP 420248 420248 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C216:99 scaffold1104 SAMTools SNP 420255 420255 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold1104 SAMTools SNP 420278 420278 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1104 SAMTools SNP 420303 420303 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1104 SAMTools SNP 421545 421545 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1104 SAMTools SNP 421548 421548 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1104 SAMTools SNP 421913 421913 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1104 SAMTools SNP 422067 422067 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1104 SAMTools SNP 422146 422146 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1104 SAMTools SNP 423347 423347 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.1e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C129:60 scaffold1104 SAMTools SNP 423357 423357 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C156:37 scaffold1104 SAMTools SNP 441917 441917 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1104 SAMTools SNP 442121 442121 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1104 SAMTools SNP 442167 442167 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C251:62 scaffold1104 SAMTools SNP 442211 442211 34.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1104 SAMTools SNP 442288 442288 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 442401 442401 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 442449 442449 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 442707 442707 26.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1104 SAMTools SNP 442992 442992 31.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1104 SAMTools SNP 445291 445291 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1104 SAMTools SNP 445325 445325 164 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1104 SAMTools SNP 446194 446194 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C38%2C113%2C40%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.092%2C2e-172%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1104 SAMTools SNP 446262 446262 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D522%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C59%2C133%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 447291 447291 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C67%2C86%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.31%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 451597 451597 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1104 SAMTools SNP 452416 452416 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 453175 453175 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1104 SAMTools SNP 454325 454325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1104 SAMTools SNP 454378 454378 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1104 SAMTools SNP 455591 455591 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.13%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1104 SAMTools SNP 456238 456238 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C21%2C0:39 scaffold1104 SAMTools SNP 456929 456929 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C184:99 scaffold1104 SAMTools SNP 456932 456932 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold1104 SAMTools SNP 457178 457178 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.0068%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C171:99 scaffold1104 SAMTools SNP 457510 457510 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C156:99 scaffold1104 SAMTools SNP 457678 457678 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1104 SAMTools SNP 457910 457910 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1104 SAMTools SNP 458119 458119 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C8.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1104 SAMTools SNP 458269 458269 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1104 SAMTools SNP 458642 458642 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C217:99 scaffold1104 SAMTools SNP 458778 458778 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1104 SAMTools SNP 459003 459003 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 459123 459123 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 459242 459242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1104 SAMTools SNP 459573 459573 38.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1104 SAMTools SNP 459682 459682 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.43%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C107:41 scaffold1104 SAMTools SNP 460619 460619 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1104 SAMTools SNP 460742 460742 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C125:40 scaffold1104 SAMTools SNP 460992 460992 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C76:79 scaffold1104 SAMTools SNP 461026 461026 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 461528 461528 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.048%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C151:99 scaffold1104 SAMTools SNP 461614 461614 28.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1104 SAMTools SNP 461767 461767 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 461806 461806 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1104 SAMTools SNP 461942 461942 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 461957 461957 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 462258 462258 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1104 SAMTools SNP 462311 462311 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.011%2C9.3e-05%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C226:39 scaffold1104 SAMTools SNP 462580 462580 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C190:99 scaffold1104 SAMTools SNP 462832 462832 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1104 SAMTools SNP 463073 463073 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C151:85 scaffold1104 SAMTools SNP 463074 463074 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C151:85 scaffold1104 SAMTools SNP 463275 463275 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C29%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold1104 SAMTools SNP 463378 463378 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1104 SAMTools SNP 463604 463604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1104 SAMTools SNP 463845 463845 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.086%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C169:99 scaffold1104 SAMTools SNP 463853 463853 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1104 SAMTools SNP 464102 464102 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1104 SAMTools SNP 464114 464114 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1104 SAMTools SNP 464129 464129 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1104 SAMTools SNP 464313 464313 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1104 SAMTools SNP 464767 464767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 465257 465257 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1104 SAMTools SNP 471679 471679 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1104 SAMTools SNP 471690 471690 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 471974 471974 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1104 SAMTools SNP 472172 472172 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C80:79 scaffold1104 SAMTools SNP 472565 472565 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1104 SAMTools SNP 472636 472636 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 472727 472727 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 473155 473155 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 473167 473167 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 473197 473197 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 473239 473239 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 473594 473594 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1104 SAMTools SNP 473966 473966 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1104 SAMTools SNP 474002 474002 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 474084 474084 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1104 SAMTools SNP 476740 476740 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 477724 477724 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 478710 478710 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 490681 490681 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C8.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1104 SAMTools SNP 490726 490726 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 490750 490750 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 490958 490958 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C29%3BMQ%3D50%3BFQ%3D-143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C116%2C0:99 scaffold1104 SAMTools SNP 491012 491012 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1104 SAMTools SNP 491666 491666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1104 SAMTools SNP 491687 491687 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1104 SAMTools SNP 492302 492302 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C14%2C31%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1104 SAMTools SNP 492359 492359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1104 SAMTools SNP 492585 492585 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.012%2C0.13%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1104 SAMTools SNP 493753 493753 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1104 SAMTools SNP 494898 494898 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1104 SAMTools SNP 495399 495399 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1104 SAMTools SNP 495979 495979 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 496036 496036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1.5e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1104 SAMTools SNP 496896 496896 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 497012 497012 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1104 SAMTools SNP 497282 497282 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C12%2C0:21 scaffold1104 SAMTools SNP 497435 497435 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1104 SAMTools SNP 498297 498297 226 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1104 SAMTools SNP 498355 498355 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.21%2C0.22%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold1104 SAMTools SNP 498544 498544 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1104 SAMTools SNP 502730 502730 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 502748 502748 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1104 SAMTools SNP 502811 502811 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.39%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1104 SAMTools SNP 502832 502832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.14%2C0.25%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold1104 SAMTools SNP 503102 503102 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C20%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.19%2C0.48%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold1104 SAMTools SNP 503323 503323 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1104 SAMTools SNP 503329 503329 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1104 SAMTools SNP 503565 503565 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C20%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.2%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C138:99 scaffold1104 SAMTools SNP 503739 503739 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold1104 SAMTools SNP 504006 504006 113 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold1104 SAMTools SNP 504605 504605 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0026%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1104 SAMTools SNP 504607 504607 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1104 SAMTools SNP 504877 504877 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1104 SAMTools SNP 505757 505757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1104 SAMTools SNP 506120 506120 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D2.7e-05%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1104 SAMTools SNP 506507 506507 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C190:99 scaffold1104 SAMTools SNP 507003 507003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1104 SAMTools SNP 507232 507232 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1104 SAMTools SNP 507566 507566 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1104 SAMTools SNP 507629 507629 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C38:41 scaffold1104 SAMTools SNP 508103 508103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1104 SAMTools SNP 508395 508395 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1104 SAMTools SNP 512938 512938 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1104 SAMTools SNP 512948 512948 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1104 SAMTools SNP 512959 512959 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1104 SAMTools SNP 512977 512977 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1104 SAMTools SNP 513013 513013 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C228:99 scaffold1104 SAMTools SNP 513304 513304 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.43%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1104 SAMTools SNP 513343 513343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1104 SAMTools SNP 513641 513641 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C43:46 scaffold1104 SAMTools SNP 513885 513885 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1104 SAMTools SNP 513901 513901 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1104 SAMTools SNP 514102 514102 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1104 SAMTools SNP 514498 514498 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1104 SAMTools SNP 514516 514516 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.5%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C221:99 scaffold1104 SAMTools SNP 514764 514764 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1104 SAMTools SNP 514947 514947 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 515007 515007 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1104 SAMTools SNP 515256 515256 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold1104 SAMTools SNP 531238 531238 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 531279 531279 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 531511 531511 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 607340 607340 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 607364 607364 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1104 SAMTools SNP 611667 611667 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1104 SAMTools SNP 611779 611779 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold1104 SAMTools SNP 614304 614304 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold1104 SAMTools SNP 614346 614346 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1104 SAMTools SNP 616068 616068 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold1104 SAMTools SNP 616373 616373 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1104 SAMTools SNP 618518 618518 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 618523 618523 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1104 SAMTools SNP 619010 619010 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 619264 619264 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1104 SAMTools SNP 620088 620088 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1104 SAMTools SNP 620115 620115 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C7%2C1%3BMQ%3D49%3BFQ%3D175%3BPV4%3D0.4%2C1%2C0.12%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C227:99 scaffold1104 SAMTools SNP 623868 623868 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C21%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C154%2C0:99 scaffold1104 SAMTools SNP 624024 624024 68.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold1104 SAMTools SNP 632823 632823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1104 SAMTools SNP 632874 632874 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C23%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1104 SAMTools SNP 634346 634346 38.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1104 SAMTools SNP 634380 634380 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.1%2C1.7e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C77:36 scaffold1104 SAMTools SNP 634626 634626 29.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1104 SAMTools SNP 634961 634961 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1104 SAMTools SNP 634989 634989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1104 SAMTools SNP 635437 635437 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1104 SAMTools SNP 635734 635734 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C48%2C0:91 scaffold1104 SAMTools SNP 636252 636252 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1104 SAMTools SNP 636974 636974 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.31%2C1.5e-13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C163:43 scaffold1104 SAMTools SNP 641886 641886 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1104 SAMTools SNP 643354 643354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C4%2C40%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1107 SAMTools SNP 9831 9831 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1107 SAMTools SNP 10217 10217 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1107 SAMTools SNP 10243 10243 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1107 SAMTools SNP 10252 10252 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1107 SAMTools SNP 10703 10703 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1107 SAMTools SNP 11582 11582 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1107 SAMTools SNP 11601 11601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1107 SAMTools SNP 11626 11626 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0019%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold1107 SAMTools SNP 11919 11919 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1107 SAMTools SNP 11937 11937 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1107 SAMTools SNP 11993 11993 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1107 SAMTools SNP 12063 12063 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1107 SAMTools SNP 12766 12766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 14287 14287 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D0.42%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C36:38 scaffold1107 SAMTools SNP 17719 17719 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C25%2C9%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.42%2C1.4e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1107 SAMTools SNP 17884 17884 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C12%2C16%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.059%2C4.9e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1107 SAMTools SNP 21794 21794 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1107 SAMTools SNP 22442 22442 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 22868 22868 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C4%3BMQ%3D20%3BFQ%3D-4.93%3BPV4%3D0.19%2C1%2C0.2%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C24:28 scaffold1107 SAMTools SNP 25639 25639 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C76:79 scaffold1107 SAMTools SNP 29475 29475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 30737 30737 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1107 SAMTools SNP 30810 30810 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.34%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1107 SAMTools SNP 31704 31704 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1107 SAMTools SNP 33298 33298 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C185:99 scaffold1107 SAMTools SNP 33325 33325 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.24%2C0.0037%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C241:98 scaffold1107 SAMTools SNP 40601 40601 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1107 SAMTools SNP 46833 46833 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1107 SAMTools SNP 47642 47642 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C45%2C0:87 scaffold1107 SAMTools SNP 52864 52864 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C87%2C0:99 scaffold1107 SAMTools SNP 54309 54309 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1107 SAMTools SNP 54468 54468 18.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1107 SAMTools SNP 55402 55402 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 62583 62583 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1107 SAMTools SNP 62740 62740 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1107 SAMTools SNP 64153 64153 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1107 SAMTools SNP 64171 64171 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1107 SAMTools SNP 64654 64654 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1107 SAMTools SNP 64988 64988 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1107 SAMTools SNP 65139 65139 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1107 SAMTools SNP 65154 65154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 65601 65601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 67686 67686 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1107 SAMTools SNP 68058 68058 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1107 SAMTools SNP 74300 74300 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.2%2C0.013%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C165:34 scaffold1107 SAMTools SNP 75409 75409 54.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1107 SAMTools SNP 75509 75509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1107 SAMTools SNP 76292 76292 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1107 SAMTools SNP 76320 76320 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1107 SAMTools SNP 76768 76768 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1107 SAMTools SNP 76813 76813 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1107 SAMTools SNP 77056 77056 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.11%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1107 SAMTools SNP 77269 77269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1107 SAMTools SNP 77518 77518 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 77531 77531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 77555 77555 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1107 SAMTools SNP 77571 77571 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1107 SAMTools SNP 78566 78566 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1107 SAMTools SNP 78590 78590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1107 SAMTools SNP 80240 80240 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold1107 SAMTools SNP 80281 80281 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C148:53 scaffold1107 SAMTools SNP 81675 81675 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 82409 82409 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.043%2C0.00027%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1107 SAMTools SNP 83609 83609 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1107 SAMTools SNP 83818 83818 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C9%2C16%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1107 SAMTools SNP 83875 83875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1107 SAMTools SNP 83884 83884 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C7%2C153%2C33%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C2.5e-16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1107 SAMTools SNP 83944 83944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C164%2C63%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1107 SAMTools SNP 85402 85402 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1107 SAMTools SNP 86180 86180 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 86589 86589 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1107 SAMTools SNP 87515 87515 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C7%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0016%2C1%2C1%2C4.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1107 SAMTools SNP 88266 88266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C56%2C132%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1107 SAMTools SNP 88956 88956 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C27%2C23%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0036%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1107 SAMTools SNP 89014 89014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D787%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D414%2C19%2C340%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1107 SAMTools SNP 89747 89747 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C45%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1107 SAMTools SNP 89760 89760 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1107 SAMTools SNP 90169 90169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C35%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1107 SAMTools SNP 90426 90426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D578%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1107 SAMTools SNP 90495 90495 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D582%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1107 SAMTools SNP 90531 90531 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D499%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C404%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1107 SAMTools SNP 90756 90756 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C62%3BMQ%3D50%3BFQ%3D-163%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C136%2C0:99 scaffold1107 SAMTools SNP 93282 93282 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.075%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1107 SAMTools SNP 93291 93291 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1107 SAMTools SNP 93672 93672 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1107 SAMTools SNP 94066 94066 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.56%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1107 SAMTools SNP 94404 94404 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold1107 SAMTools SNP 94842 94842 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1107 SAMTools SNP 95052 95052 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1107 SAMTools SNP 95145 95145 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold1107 SAMTools SNP 95617 95617 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.41%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1107 SAMTools SNP 95619 95619 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1107 SAMTools SNP 95631 95631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1107 SAMTools SNP 96995 96995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1107 SAMTools SNP 97846 97846 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1107 SAMTools SNP 98587 98587 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1107 SAMTools SNP 99807 99807 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1107 SAMTools SNP 103752 103752 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1107 SAMTools SNP 103778 103778 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold1107 SAMTools SNP 105380 105380 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C21%2C0:39 scaffold1107 SAMTools SNP 106016 106016 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1107 SAMTools SNP 106091 106091 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1107 SAMTools SNP 108049 108049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1107 SAMTools SNP 108085 108085 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1107 SAMTools SNP 109915 109915 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C27%2C0:51 scaffold1108 SAMTools SNP 728 728 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 731 731 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 784 784 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 794 794 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 7576 7576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C71%2C4%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.4e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 7597 7597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C73%2C2%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C2.1e-46%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 7645 7645 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 9178 9178 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1108 SAMTools SNP 9738 9738 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1108 SAMTools SNP 9768 9768 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.0047%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1108 SAMTools SNP 9783 9783 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C81%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 10174 10174 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C9%2C48%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 11142 11142 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.029%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1108 SAMTools SNP 11187 11187 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1108 SAMTools SNP 12342 12342 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1108 SAMTools SNP 13534 13534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1108 SAMTools SNP 13558 13558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1108 SAMTools SNP 14410 14410 30.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1108 SAMTools SNP 14802 14802 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1108 SAMTools SNP 15146 15146 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 15494 15494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1108 SAMTools SNP 15578 15578 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 16785 16785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C13%2C31%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.28%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 17285 17285 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C33%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold1108 SAMTools SNP 17321 17321 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C1%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.016%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1108 SAMTools SNP 17435 17435 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C34%2C0%2C11%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0053%2C4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1108 SAMTools SNP 18641 18641 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C1%3BMQ%3D49%3BFQ%3D-37%3BPV4%3D1%2C0.39%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C10%2C0:17 scaffold1108 SAMTools SNP 18656 18656 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C0%3BMQ%3D49%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1108 SAMTools SNP 21593 21593 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C10%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00044%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1108 SAMTools SNP 21596 21596 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C14%2C31%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.00093%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1108 SAMTools SNP 23891 23891 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C10%2C9%3BMQ%3D42%3BFQ%3D16.1%3BPV4%3D0.12%2C1.1e-16%2C0.023%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1108 SAMTools SNP 24311 24311 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C35%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C178%2C0:99 scaffold1108 SAMTools SNP 24344 24344 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C57%2C0:99 scaffold1108 SAMTools SNP 30078 30078 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1108 SAMTools SNP 30108 30108 113 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D41%3BFQ%3D-32%3BPV4%3D0.067%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C5%2C0:9 scaffold1108 SAMTools SNP 32260 32260 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C2%3BMQ%3D48%3BFQ%3D93%3BPV4%3D0.52%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold1108 SAMTools SNP 32554 32554 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.63%2C9.5e-28%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1108 SAMTools SNP 33211 33211 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1108 SAMTools SNP 34111 34111 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1108 SAMTools SNP 34648 34648 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1108 SAMTools SNP 35337 35337 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C36%2C0:69 scaffold1108 SAMTools SNP 35430 35430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1108 SAMTools SNP 35442 35442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1108 SAMTools SNP 42282 42282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1108 SAMTools SNP 42295 42295 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.25%2C1.7e-05%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1108 SAMTools SNP 43086 43086 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C17%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.24%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1108 SAMTools SNP 43110 43110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1108 SAMTools SNP 44201 44201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1108 SAMTools SNP 45528 45528 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1108 SAMTools SNP 45555 45555 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.00016%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1108 SAMTools SNP 45565 45565 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1108 SAMTools SNP 45583 45583 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1108 SAMTools SNP 46065 46065 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 46071 46071 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1108 SAMTools SNP 46239 46239 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1108 SAMTools SNP 46266 46266 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C107:99 scaffold1108 SAMTools SNP 46293 46293 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D48.5%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C85:78 scaffold1108 SAMTools SNP 48923 48923 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.22%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1108 SAMTools SNP 48932 48932 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.22%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1108 SAMTools SNP 49568 49568 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C7%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1108 SAMTools SNP 49571 49571 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1108 SAMTools SNP 49978 49978 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 50035 50035 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 50178 50178 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 50250 50250 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1108 SAMTools SNP 50253 50253 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C37%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 50549 50549 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1108 SAMTools SNP 50893 50893 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1108 SAMTools SNP 50894 50894 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 64520 64520 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1108 SAMTools SNP 64544 64544 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1108 SAMTools SNP 70559 70559 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 70595 70595 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 81561 81561 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 81880 81880 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 105619 105619 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1108 SAMTools SNP 105650 105650 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1108 SAMTools SNP 105691 105691 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1108 SAMTools SNP 110507 110507 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 114187 114187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C162%2C100%3BMQ%3D45%3BFQ%3D-282%3BPV4%3D1%2C0.37%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 114418 114418 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1108 SAMTools SNP 115461 115461 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1108 SAMTools SNP 115983 115983 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1108 SAMTools SNP 116195 116195 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C56%2C3%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.3e-10%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 118215 118215 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C43%2C0%2C21%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0022%2C5.9e-12%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1108 SAMTools SNP 119028 119028 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C4.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C212:73 scaffold1108 SAMTools SNP 119414 119414 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C2.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1108 SAMTools SNP 119494 119494 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C99:54 scaffold1108 SAMTools SNP 119744 119744 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C72%2C0:99 scaffold1108 SAMTools SNP 120738 120738 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold1108 SAMTools SNP 120810 120810 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.03%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1108 SAMTools SNP 121398 121398 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C10%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C9.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1108 SAMTools SNP 121511 121511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1108 SAMTools SNP 121893 121893 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1108 SAMTools SNP 124243 124243 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold1108 SAMTools SNP 124387 124387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1108 SAMTools SNP 125046 125046 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C0:57 scaffold1108 SAMTools SNP 126099 126099 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1108 SAMTools SNP 126439 126439 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 127231 127231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 127998 127998 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1108 SAMTools SNP 128465 128465 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.038%2C1.7e-09%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1108 SAMTools SNP 128938 128938 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1108 SAMTools SNP 128956 128956 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1108 SAMTools SNP 128965 128965 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C163:99 scaffold1108 SAMTools SNP 129046 129046 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 129052 129052 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 129298 129298 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1108 SAMTools SNP 129445 129445 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.19%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold1108 SAMTools SNP 129498 129498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1108 SAMTools SNP 129618 129618 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 130185 130185 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C5%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1108 SAMTools SNP 130227 130227 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C41%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1108 SAMTools SNP 130381 130381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C12%2C53%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.0021%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold1108 SAMTools SNP 130651 130651 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C5%2C23%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.66%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1108 SAMTools SNP 130824 130824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C22%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 131073 131073 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C75%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 131085 131085 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C60%2C2%2C16%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.44%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1108 SAMTools SNP 131377 131377 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 131382 131382 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1108 SAMTools SNP 135117 135117 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C5%2C12%2C87%3BMQ%3D27%3BFQ%3D-150%3BPV4%3D4.7e-06%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1108 SAMTools SNP 136101 136101 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C31%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.34%2C1.4e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1108 SAMTools SNP 136211 136211 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C26%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 136233 136233 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C14%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.38%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1108 SAMTools SNP 136815 136815 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C52%2C2%2C48%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.44%2C3.2e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1108 SAMTools SNP 137096 137096 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold1108 SAMTools SNP 140907 140907 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C163:99 scaffold1108 SAMTools SNP 141012 141012 4.75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1108 SAMTools SNP 141021 141021 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C3.3e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C154:99 scaffold1108 SAMTools SNP 141105 141105 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C82:85 scaffold1108 SAMTools SNP 141111 141111 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0027%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1108 SAMTools SNP 145051 145051 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1108 SAMTools SNP 145054 145054 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1108 SAMTools SNP 148549 148549 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 149128 149128 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 149644 149644 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.53%2C8.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1108 SAMTools SNP 149865 149865 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1108 SAMTools SNP 149891 149891 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1108 SAMTools SNP 149918 149918 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.14%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1108 SAMTools SNP 150584 150584 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1108 SAMTools SNP 150602 150602 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1108 SAMTools SNP 150652 150652 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1108 SAMTools SNP 150969 150969 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1108 SAMTools SNP 153112 153112 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 153121 153121 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 153467 153467 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1108 SAMTools SNP 153497 153497 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1108 SAMTools SNP 153605 153605 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 156941 156941 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 172779 172779 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold1108 SAMTools SNP 172869 172869 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 173008 173008 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 174803 174803 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 174821 174821 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 174984 174984 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 176497 176497 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1108 SAMTools SNP 176506 176506 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0114%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1108 SAMTools SNP 176536 176536 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C218:47 scaffold1108 SAMTools SNP 176545 176545 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.44%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C148:99 scaffold1108 SAMTools SNP 176608 176608 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1108 SAMTools SNP 176633 176633 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.023%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C254:85 scaffold1108 SAMTools SNP 176924 176924 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold1108 SAMTools SNP 176926 176926 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.28%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold1108 SAMTools SNP 176977 176977 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1108 SAMTools SNP 177007 177007 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 180326 180326 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1108 SAMTools SNP 180355 180355 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1108 SAMTools SNP 181131 181131 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold1108 SAMTools SNP 181132 181132 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.048%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1108 SAMTools SNP 182951 182951 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 182978 182978 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 183008 183008 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C190:99 scaffold1108 SAMTools SNP 183035 183035 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C217:99 scaffold1108 SAMTools SNP 183309 183309 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 184082 184082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1108 SAMTools SNP 184299 184299 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1108 SAMTools SNP 184434 184434 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.51%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1108 SAMTools SNP 185519 185519 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold1108 SAMTools SNP 191865 191865 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.25%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C30:29 scaffold1108 SAMTools SNP 198714 198714 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold1108 SAMTools SNP 212140 212140 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 214436 214436 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 231811 231811 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold1108 SAMTools SNP 231844 231844 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1108 SAMTools SNP 231892 231892 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1108 SAMTools SNP 231916 231916 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 232073 232073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 232114 232114 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 235693 235693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1108 SAMTools SNP 235729 235729 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.14%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1108 SAMTools SNP 235798 235798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.21%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C220:99 scaffold1108 SAMTools SNP 235813 235813 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C14%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.00012%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1108 SAMTools SNP 235861 235861 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C23%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1108 SAMTools SNP 236152 236152 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C34%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 236176 236176 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C30%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 236206 236206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C31%2C45%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 237134 237134 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C110%2C105%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 239026 239026 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C11%2C18%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.23%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1108 SAMTools SNP 239587 239587 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C67%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.11%2C0.012%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1108 SAMTools SNP 239912 239912 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C30%2C0:57 scaffold1108 SAMTools SNP 242152 242152 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C37%3BMQ%3D50%3BFQ%3D-212%3BPV4%3D1%2C0.4%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C0:99 scaffold1108 SAMTools SNP 242169 242169 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C94%2C61%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1.2e-12%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 242833 242833 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C63%2C34%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 243101 243101 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 243402 243402 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.56%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C246:99 scaffold1108 SAMTools SNP 245158 245158 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1108 SAMTools SNP 245919 245919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1108 SAMTools SNP 245967 245967 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C17%3BMQ%3D50%3BFQ%3D-187%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C160%2C0:99 scaffold1108 SAMTools SNP 249850 249850 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C27%2C22%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.073%2C0.065%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1108 SAMTools SNP 250132 250132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 250156 250156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C66%2C21%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 250456 250456 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C8%2C52%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.26%2C0.31%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1108 SAMTools SNP 250758 250758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 252496 252496 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1108 SAMTools SNP 253648 253648 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.31%2C0.32%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1108 SAMTools SNP 254773 254773 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1108 SAMTools SNP 254776 254776 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1108 SAMTools SNP 257030 257030 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1108 SAMTools SNP 257191 257191 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.34%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1108 SAMTools SNP 257214 257214 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1108 SAMTools SNP 257217 257217 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C9%2C16%2C0%3BMQ%3D49%3BFQ%3D35%3BPV4%3D0.19%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1108 SAMTools SNP 259056 259056 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1108 SAMTools SNP 259417 259417 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1108 SAMTools SNP 260436 260436 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 261477 261477 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 261764 261764 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1108 SAMTools SNP 261809 261809 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.37%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1108 SAMTools SNP 261824 261824 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1108 SAMTools SNP 262234 262234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C100%2C0:99 scaffold1108 SAMTools SNP 262254 262254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1108 SAMTools SNP 262312 262312 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C2%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-10%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 262333 262333 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 263144 263144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 266490 266490 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1108 SAMTools SNP 267460 267460 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 267497 267497 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 271904 271904 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1108 SAMTools SNP 272152 272152 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 281055 281055 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1108 SAMTools SNP 281072 281072 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C27%3BMQ%3D49%3BFQ%3D-99%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1108 SAMTools SNP 281287 281287 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.55%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1108 SAMTools SNP 283532 283532 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold1108 SAMTools SNP 283535 283535 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold1108 SAMTools SNP 285496 285496 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1108 SAMTools SNP 285810 285810 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1108 SAMTools SNP 286813 286813 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.56%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1108 SAMTools SNP 286884 286884 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1108 SAMTools SNP 292577 292577 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1105%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D246%2C299%2C327%2C179%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-10%2C5.7e-42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 292646 292646 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1298%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C485%2C191%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 293149 293149 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1071%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C855%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 293319 293319 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 293548 293548 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1108 SAMTools SNP 293574 293574 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1108 SAMTools SNP 293826 293826 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C75%2C0%2C20%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1108 SAMTools SNP 297664 297664 64.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C13%2C0:23 scaffold1108 SAMTools SNP 300477 300477 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 300513 300513 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1108 SAMTools SNP 300555 300555 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1108 SAMTools SNP 300558 300558 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1108 SAMTools SNP 300938 300938 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1108 SAMTools SNP 301019 301019 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1108 SAMTools SNP 302493 302493 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.079%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1108 SAMTools SNP 302535 302535 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1108 SAMTools SNP 302550 302550 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1108 SAMTools SNP 305020 305020 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D45%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C225:66 scaffold1108 SAMTools SNP 305044 305044 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1108 SAMTools SNP 321385 321385 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.33%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C80:58 scaffold1108 SAMTools SNP 321493 321493 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 321606 321606 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1108 SAMTools SNP 321612 321612 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 321633 321633 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 321956 321956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1108 SAMTools SNP 321975 321975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1108 SAMTools SNP 322364 322364 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1108 SAMTools SNP 322407 322407 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1108 SAMTools SNP 323185 323185 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1108 SAMTools SNP 323242 323242 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D38%3BFQ%3D43.4%3BPV4%3D0.43%2C0.19%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C71:73 scaffold1108 SAMTools SNP 323674 323674 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 323692 323692 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 327288 327288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 327296 327296 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 327365 327365 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1108 SAMTools SNP 327383 327383 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1108 SAMTools SNP 329366 329366 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1108 SAMTools SNP 330716 330716 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 331243 331243 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1108 SAMTools SNP 333318 333318 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1108 SAMTools SNP 333321 333321 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1108 SAMTools SNP 333411 333411 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D3.7e-05%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1108 SAMTools SNP 333578 333578 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D8.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold1108 SAMTools SNP 333605 333605 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 334102 334102 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 334108 334108 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1108 SAMTools SNP 335984 335984 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1108 SAMTools SNP 338246 338246 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1108 SAMTools SNP 338319 338319 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C225:69 scaffold1108 SAMTools SNP 338575 338575 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold1108 SAMTools SNP 338584 338584 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1108 SAMTools SNP 338824 338824 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1108 SAMTools SNP 338911 338911 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C174:30 scaffold1108 SAMTools SNP 362221 362221 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 362860 362860 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 381154 381154 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold1108 SAMTools SNP 382305 382305 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1108 SAMTools SNP 389997 389997 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 390094 390094 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1108 SAMTools SNP 390341 390341 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1108 SAMTools SNP 390663 390663 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 390669 390669 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 391141 391141 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 391198 391198 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1108 SAMTools SNP 393392 393392 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.46%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold1108 SAMTools SNP 394003 394003 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00027%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1108 SAMTools SNP 394025 394025 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C8.2e-05%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C177:39 scaffold1108 SAMTools SNP 397851 397851 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1108 SAMTools SNP 398744 398744 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1108 SAMTools SNP 399595 399595 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C223:99 scaffold1108 SAMTools SNP 400354 400354 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 400657 400657 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.02%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C216:50 scaffold1108 SAMTools SNP 400962 400962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C16%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1108 SAMTools SNP 401210 401210 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1108 SAMTools SNP 401966 401966 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1108 SAMTools SNP 402037 402037 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1108 SAMTools SNP 402082 402082 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1108 SAMTools SNP 402997 402997 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold1108 SAMTools SNP 403017 403017 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1108 SAMTools SNP 403889 403889 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 405416 405416 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1108 SAMTools SNP 405462 405462 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1108 SAMTools SNP 405486 405486 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C57%2C0:99 scaffold1108 SAMTools SNP 405589 405589 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00082%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 405960 405960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1108 SAMTools SNP 406059 406059 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold1108 SAMTools SNP 406567 406567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1108 SAMTools SNP 406630 406630 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 406644 406644 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 406682 406682 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1108 SAMTools SNP 407146 407146 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1108 SAMTools SNP 409102 409102 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1108 SAMTools SNP 412953 412953 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C0%2C23%2C0%3BMQ%3D48%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C238:99 scaffold1108 SAMTools SNP 412959 412959 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C22%2C0%3BMQ%3D48%3BFQ%3D138%3BPV4%3D1%2C0.043%2C0.49%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C234:99 scaffold1108 SAMTools SNP 415917 415917 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1108 SAMTools SNP 415959 415959 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1108 SAMTools SNP 416272 416272 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1108 SAMTools SNP 417762 417762 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C25%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.4e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C94:34 scaffold1108 SAMTools SNP 438421 438421 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C2.4e-06%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C110:49 scaffold1108 SAMTools SNP 439042 439042 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.1e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C176:34 scaffold1108 SAMTools SNP 458396 458396 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1108 SAMTools SNP 459736 459736 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1108 SAMTools SNP 459775 459775 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1108 SAMTools SNP 464796 464796 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 465011 465011 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C224:51 scaffold1108 SAMTools SNP 465023 465023 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2e-06%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C241:51 scaffold1108 SAMTools SNP 465230 465230 18 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1108 SAMTools SNP 475920 475920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 476123 476123 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C51%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1108 SAMTools SNP 479153 479153 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C116%2C19%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 479165 479165 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1108 SAMTools SNP 479201 479201 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C32%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 479648 479648 33.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1108 SAMTools SNP 481660 481660 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C48%2C0:93 scaffold1108 SAMTools SNP 483020 483020 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C110:59 scaffold1108 SAMTools SNP 483206 483206 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1108 SAMTools SNP 483629 483629 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1108 SAMTools SNP 483647 483647 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1108 SAMTools SNP 483725 483725 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1108 SAMTools SNP 484120 484120 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1108 SAMTools SNP 484138 484138 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1108 SAMTools SNP 485734 485734 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C10%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1108 SAMTools SNP 485791 485791 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 489321 489321 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1108 SAMTools SNP 489366 489366 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1108 SAMTools SNP 491323 491323 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold1108 SAMTools SNP 491326 491326 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold1108 SAMTools SNP 491338 491338 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C231:99 scaffold1108 SAMTools SNP 553270 553270 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1108 SAMTools SNP 563190 563190 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1108 SAMTools SNP 632081 632081 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1108 SAMTools SNP 632240 632240 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C4%3BMQ%3D32%3BFQ%3D21%3BPV4%3D1%2C6.4e-11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C66:51 scaffold1108 SAMTools SNP 645281 645281 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C40%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1108 SAMTools SNP 646953 646953 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1108 SAMTools SNP 718674 718674 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1108 SAMTools SNP 718908 718908 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1108 SAMTools SNP 718973 718973 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1108 SAMTools SNP 719840 719840 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 51220 51220 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1112 SAMTools SNP 51251 51251 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1112 SAMTools SNP 53002 53002 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.29%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1112 SAMTools SNP 53057 53057 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold1112 SAMTools SNP 53064 53064 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1112 SAMTools SNP 113087 113087 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1112 SAMTools SNP 114030 114030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 116743 116743 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1112 SAMTools SNP 116815 116815 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1112 SAMTools SNP 120538 120538 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1112 SAMTools SNP 120556 120556 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1112 SAMTools SNP 120589 120589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1112 SAMTools SNP 120601 120601 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1112 SAMTools SNP 121832 121832 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.07%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1112 SAMTools SNP 121880 121880 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0066%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1112 SAMTools SNP 128171 128171 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1112 SAMTools SNP 128177 128177 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1112 SAMTools SNP 128724 128724 55.8 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1112 SAMTools SNP 128745 128745 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1112 SAMTools SNP 129710 129710 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1112 SAMTools SNP 129743 129743 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1112 SAMTools SNP 130194 130194 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1112 SAMTools SNP 130773 130773 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1112 SAMTools SNP 130795 130795 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1112 SAMTools SNP 130821 130821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 130984 130984 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 136503 136503 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 136518 136518 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1112 SAMTools SNP 136524 136524 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.28%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1112 SAMTools SNP 136681 136681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 136689 136689 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 137236 137236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1112 SAMTools SNP 137445 137445 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1112 SAMTools SNP 137464 137464 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 137593 137593 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C16%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C214%2C0:99 scaffold1112 SAMTools SNP 137748 137748 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C84%2C0:99 scaffold1112 SAMTools SNP 141461 141461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1112 SAMTools SNP 141482 141482 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.27%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C218:99 scaffold1112 SAMTools SNP 145299 145299 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C71:55 scaffold1112 SAMTools SNP 145888 145888 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C8e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1112 SAMTools SNP 147010 147010 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1112 SAMTools SNP 147049 147049 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1112 SAMTools SNP 147811 147811 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1112 SAMTools SNP 147835 147835 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1112 SAMTools SNP 152065 152065 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1112 SAMTools SNP 152202 152202 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold1112 SAMTools SNP 152223 152223 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C224:69 scaffold1112 SAMTools SNP 152228 152228 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1112 SAMTools SNP 154045 154045 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1112 SAMTools SNP 154059 154059 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C170:31 scaffold1112 SAMTools SNP 154433 154433 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.23%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1112 SAMTools SNP 154452 154452 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold1112 SAMTools SNP 155630 155630 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1112 SAMTools SNP 156123 156123 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold1112 SAMTools SNP 156148 156148 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1112 SAMTools SNP 156225 156225 30.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold1112 SAMTools SNP 156800 156800 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 157880 157880 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1112 SAMTools SNP 157891 157891 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1112 SAMTools SNP 157979 157979 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1112 SAMTools SNP 158988 158988 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1112 SAMTools SNP 162426 162426 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 162453 162453 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1112 SAMTools SNP 162486 162486 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.54%2C0.00099%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1112 SAMTools SNP 162499 162499 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.25%2C2.7e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1112 SAMTools SNP 164471 164471 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1112 SAMTools SNP 164485 164485 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1112 SAMTools SNP 164508 164508 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C75:78 scaffold1112 SAMTools SNP 167346 167346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.0024%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 168173 168173 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.43%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1112 SAMTools SNP 168362 168362 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1112 SAMTools SNP 169076 169076 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1112 SAMTools SNP 169088 169088 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.091%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C231:99 scaffold1112 SAMTools SNP 169222 169222 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1112 SAMTools SNP 169320 169320 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1112 SAMTools SNP 169664 169664 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1112 SAMTools SNP 178326 178326 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 180329 180329 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.4%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C112:52 scaffold1112 SAMTools SNP 183577 183577 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C86%2C8%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 184377 184377 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C72%2C17%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 184413 184413 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C49%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-11%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 185405 185405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1112 SAMTools SNP 185963 185963 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C57%2C13%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D3.1e-07%2C0.43%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1112 SAMTools SNP 186011 186011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C94%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 186029 186029 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C13%2C11%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-25%2C1%2C1%2C9.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 186592 186592 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C138%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00066%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 186631 186631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C20%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 186688 186688 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C133%2C0%2C25%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.059%2C1%2C4.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C253:31 scaffold1112 SAMTools SNP 187231 187231 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C85%2C0%2C24%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.58%2C1%2C1%2C1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1112 SAMTools SNP 187252 187252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C26%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1112 SAMTools SNP 189449 189449 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C79:28 scaffold1112 SAMTools SNP 193694 193694 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1112 SAMTools SNP 193742 193742 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D13%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C48%2C0:61 scaffold1112 SAMTools SNP 194075 194075 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D12%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C57%2C0:70 scaffold1112 SAMTools SNP 197060 197060 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C1%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.1%2C1%2C0.0034%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1112 SAMTools SNP 197281 197281 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D25%3BFQ%3D5.62%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C39:31 scaffold1112 SAMTools SNP 199930 199930 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C3%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.25%2C1%2C0.016%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1112 SAMTools SNP 199960 199960 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D44%3BFQ%3D61%3BPV4%3D0.21%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1112 SAMTools SNP 201996 201996 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1112 SAMTools SNP 201999 201999 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1112 SAMTools SNP 291835 291835 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold1112 SAMTools SNP 296379 296379 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1112 SAMTools SNP 298859 298859 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1115 SAMTools SNP 3703 3703 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1115 SAMTools SNP 19039 19039 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1115 SAMTools SNP 71217 71217 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1115 SAMTools SNP 71265 71265 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1115 SAMTools SNP 72031 72031 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C32:35 scaffold1115 SAMTools SNP 72060 72060 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1115 SAMTools SNP 72874 72874 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1115 SAMTools SNP 72900 72900 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1115 SAMTools SNP 74863 74863 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1115 SAMTools SNP 75584 75584 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1115 SAMTools SNP 75594 75594 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1115 SAMTools SNP 75615 75615 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1115 SAMTools SNP 77921 77921 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1115 SAMTools SNP 80747 80747 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1115 SAMTools SNP 83364 83364 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C242:99 scaffold1115 SAMTools SNP 84047 84047 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C71:51 scaffold1115 SAMTools SNP 84168 84168 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold1115 SAMTools SNP 84261 84261 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1115 SAMTools SNP 84293 84293 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1115 SAMTools SNP 84306 84306 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1115 SAMTools SNP 89515 89515 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1115 SAMTools SNP 89587 89587 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1115 SAMTools SNP 92110 92110 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1115 SAMTools SNP 110237 110237 11.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D22%3BFQ%3D-28%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C1%2C0:3 scaffold1115 SAMTools SNP 110299 110299 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1115 SAMTools SNP 111778 111778 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1115 SAMTools SNP 111819 111819 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1115 SAMTools SNP 113015 113015 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D33%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1115 SAMTools SNP 113031 113031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C23%2C10%3BMQ%3D37%3BFQ%3D225%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1115 SAMTools SNP 113032 113032 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C16%2C8%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.78%2C1%2C0.45%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1115 SAMTools SNP 113405 113405 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C0%2C7%3BMQ%3D37%3BFQ%3D12.3%3BPV4%3D0.17%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1115 SAMTools SNP 113422 113422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C21%3BMQ%3D40%3BFQ%3D-78%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1115 SAMTools SNP 113523 113523 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1115 SAMTools SNP 113545 113545 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1115 SAMTools SNP 115345 115345 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1115 SAMTools SNP 115347 115347 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1116 SAMTools SNP 604 604 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 1710 1710 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1116 SAMTools SNP 2168 2168 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 2748 2748 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 52338 52338 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1116 SAMTools SNP 52881 52881 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1116 SAMTools SNP 52983 52983 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C19%2C7%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.67%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1116 SAMTools SNP 53229 53229 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C46%2C24%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1.5e-07%2C0.46%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1116 SAMTools SNP 54254 54254 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 54296 54296 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 54427 54427 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.063%2C8.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1116 SAMTools SNP 54590 54590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.059%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 54604 54604 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.00071%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1116 SAMTools SNP 56264 56264 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1116 SAMTools SNP 58687 58687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C99%2C28%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1116 SAMTools SNP 58837 58837 31.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1061%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C4%2C0:7 scaffold1116 SAMTools SNP 58855 58855 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1059%3BVDB%3D0.0004%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C8:11 scaffold1116 SAMTools SNP 58980 58980 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D111%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.3e-159%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1116 SAMTools SNP 59571 59571 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.047%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1116 SAMTools SNP 59572 59572 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.025%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1116 SAMTools SNP 60461 60461 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1116 SAMTools SNP 60467 60467 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1116 SAMTools SNP 60723 60723 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1116 SAMTools SNP 61315 61315 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1116 SAMTools SNP 61335 61335 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 61565 61565 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1116 SAMTools SNP 62081 62081 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 62097 62097 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.32%2C0.41%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C234:40 scaffold1116 SAMTools SNP 62168 62168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1116 SAMTools SNP 62243 62243 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1116 SAMTools SNP 65431 65431 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold1116 SAMTools SNP 66081 66081 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold1116 SAMTools SNP 66313 66313 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1116 SAMTools SNP 66421 66421 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1116 SAMTools SNP 67017 67017 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1116 SAMTools SNP 67286 67286 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold1116 SAMTools SNP 71087 71087 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 73583 73583 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1116 SAMTools SNP 74556 74556 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold1116 SAMTools SNP 74907 74907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1116 SAMTools SNP 74939 74939 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1116 SAMTools SNP 75852 75852 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1116 SAMTools SNP 76421 76421 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1116 SAMTools SNP 79008 79008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1116 SAMTools SNP 79050 79050 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1116 SAMTools SNP 79374 79374 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1116 SAMTools SNP 79384 79384 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1116 SAMTools SNP 79387 79387 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1116 SAMTools SNP 79411 79411 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 79432 79432 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1116 SAMTools SNP 79944 79944 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1116 SAMTools SNP 80759 80759 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1116 SAMTools SNP 80768 80768 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1116 SAMTools SNP 81725 81725 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1116 SAMTools SNP 83930 83930 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1116 SAMTools SNP 84456 84456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1116 SAMTools SNP 84479 84479 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1116 SAMTools SNP 86390 86390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1116 SAMTools SNP 88526 88526 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1116 SAMTools SNP 88528 88528 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1116 SAMTools SNP 88545 88545 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 89488 89488 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 89805 89805 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1116 SAMTools SNP 89830 89830 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1116 SAMTools SNP 90509 90509 109 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C113%2C251%2C0%2C242:39 scaffold1116 SAMTools SNP 91910 91910 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C168:33 scaffold1116 SAMTools SNP 92486 92486 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 92518 92518 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 92536 92536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 93047 93047 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1116 SAMTools SNP 94159 94159 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1116 SAMTools SNP 94176 94176 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1116 SAMTools SNP 95329 95329 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D75.2%3BPV4%3D1%2C0.23%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C110:99 scaffold1116 SAMTools SNP 95349 95349 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold1116 SAMTools SNP 95422 95422 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C127:40 scaffold1116 SAMTools SNP 95554 95554 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.24%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1116 SAMTools SNP 96068 96068 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1116 SAMTools SNP 98444 98444 4.85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C18%2C8%2C16%3BMQ%3D8%3BFQ%3D-32%3BPV4%3D0.52%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C5%2C0:5 scaffold1116 SAMTools SNP 99150 99150 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C7%2C12%2C0%3BMQ%3D48%3BFQ%3D17.1%3BPV4%3D0.59%2C1%2C1%2C4e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C210:47 scaffold1116 SAMTools SNP 99877 99877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C43%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.55%2C0.36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1116 SAMTools SNP 104349 104349 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C0%2C25%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C4.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1116 SAMTools SNP 104477 104477 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.071%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C202:41 scaffold1116 SAMTools SNP 114445 114445 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C224:36 scaffold1116 SAMTools SNP 116879 116879 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C171:60 scaffold1116 SAMTools SNP 116951 116951 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C10%2C2%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 116966 116966 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C15%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 118836 118836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C12%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1116 SAMTools SNP 118870 118870 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C2%3BMQ%3D47%3BFQ%3D164%3BPV4%3D0.36%2C1%2C0.43%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1116 SAMTools SNP 120302 120302 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C0.17%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C71:74 scaffold1116 SAMTools SNP 120865 120865 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C10%3BMQ%3D34%3BFQ%3D-28%3BPV4%3D0.41%2C0.39%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C1%2C0:4 scaffold1116 SAMTools SNP 120907 120907 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C19%2C1%3BMQ%3D49%3BFQ%3D209%3BPV4%3D1%2C0.15%2C0.17%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C240:99 scaffold1116 SAMTools SNP 122100 122100 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1116 SAMTools SNP 123660 123660 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C13%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1116 SAMTools SNP 124649 124649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C34%2C16%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.4%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 125082 125082 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C55%2C8%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.00017%2C0.025%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1116 SAMTools SNP 125613 125613 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1116 SAMTools SNP 125813 125813 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1116 SAMTools SNP 126640 126640 21.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1116 SAMTools SNP 132789 132789 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.3e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C229:56 scaffold1116 SAMTools SNP 139848 139848 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1116 SAMTools SNP 140065 140065 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.14%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C106:50 scaffold1116 SAMTools SNP 140118 140118 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1116 SAMTools SNP 140134 140134 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C38:41 scaffold1116 SAMTools SNP 145471 145471 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1116 SAMTools SNP 148091 148091 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1116 SAMTools SNP 148528 148528 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C177:99 scaffold1116 SAMTools SNP 148660 148660 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C39%2C0:75 scaffold1116 SAMTools SNP 148672 148672 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold1116 SAMTools SNP 148699 148699 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C251:99 scaffold1116 SAMTools SNP 149125 149125 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C12%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.48%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1116 SAMTools SNP 149347 149347 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1116 SAMTools SNP 149365 149365 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1116 SAMTools SNP 150093 150093 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 150096 150096 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 150180 150180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C0.1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1116 SAMTools SNP 151457 151457 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1116 SAMTools SNP 151460 151460 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.14%2C1%2C7.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1116 SAMTools SNP 151937 151937 73.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold1116 SAMTools SNP 152287 152287 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 152490 152490 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.02%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1116 SAMTools SNP 153039 153039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 153233 153233 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1116 SAMTools SNP 153266 153266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1116 SAMTools SNP 154094 154094 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1116 SAMTools SNP 158667 158667 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold1116 SAMTools SNP 159139 159139 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C203:99 scaffold1116 SAMTools SNP 159144 159144 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1116 SAMTools SNP 159164 159164 80.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C18%2C0:33 scaffold1116 SAMTools SNP 159866 159866 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1116 SAMTools SNP 159872 159872 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1116 SAMTools SNP 159926 159926 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1116 SAMTools SNP 160159 160159 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C118%2C0:99 scaffold1116 SAMTools SNP 160171 160171 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1116 SAMTools SNP 160303 160303 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C66%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1116 SAMTools SNP 160318 160318 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C59%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.011%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 160695 160695 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C35%2C0%2C42%3BMQ%3D50%3BFQ%3D219%3BPV4%3D7.6e-07%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1116 SAMTools SNP 160713 160713 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.025%2C0.39%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1116 SAMTools SNP 161362 161362 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1116 SAMTools SNP 161615 161615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1116 SAMTools SNP 161684 161684 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.52%2C0.016%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1116 SAMTools SNP 161717 161717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1116 SAMTools SNP 162079 162079 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1116 SAMTools SNP 162159 162159 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C17%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.029%2C0.0076%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1116 SAMTools SNP 162160 162160 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C7%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1116 SAMTools SNP 162483 162483 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 162665 162665 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1116 SAMTools SNP 165721 165721 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.07%2C0.39%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1116 SAMTools SNP 169468 169468 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1116 SAMTools SNP 170374 170374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C10%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold1116 SAMTools SNP 173625 173625 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.00072%2C0.0016%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1116 SAMTools SNP 177768 177768 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1116 SAMTools SNP 177849 177849 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1116 SAMTools SNP 179127 179127 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1116 SAMTools SNP 182852 182852 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C6%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.13%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1116 SAMTools SNP 187889 187889 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 204106 204106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1116 SAMTools SNP 205834 205834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 206530 206530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1116 SAMTools SNP 210188 210188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 210218 210218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.44%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 210230 210230 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1116 SAMTools SNP 210272 210272 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C21%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.00013%2C0.0053%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C153:99 scaffold1116 SAMTools SNP 210293 210293 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1116 SAMTools SNP 210618 210618 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C6%2C29%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold1116 SAMTools SNP 210856 210856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1116 SAMTools SNP 211654 211654 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D0.47%2C0.23%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold1116 SAMTools SNP 211952 211952 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C15%2C40%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.2%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold1116 SAMTools SNP 216531 216531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1116 SAMTools SNP 216546 216546 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 216555 216555 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1116 SAMTools SNP 216568 216568 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1116 SAMTools SNP 216905 216905 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 216910 216910 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 218907 218907 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1116 SAMTools SNP 219648 219648 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1116 SAMTools SNP 224455 224455 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold1116 SAMTools SNP 224852 224852 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1119 SAMTools SNP 80594 80594 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 80763 80763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 115024 115024 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C6%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C238%2C0:99 scaffold1119 SAMTools SNP 115737 115737 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold1119 SAMTools SNP 115747 115747 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1119 SAMTools SNP 116221 116221 53.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1119 SAMTools SNP 116275 116275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1119 SAMTools SNP 116540 116540 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1119 SAMTools SNP 117297 117297 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1119 SAMTools SNP 118549 118549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C30%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1119 SAMTools SNP 118625 118625 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C13%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D2.6e-05%2C1.5e-18%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1119 SAMTools SNP 119038 119038 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C42%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1119 SAMTools SNP 119265 119265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C44%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1119 SAMTools SNP 119305 119305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1119 SAMTools SNP 119503 119503 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1119 SAMTools SNP 119794 119794 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1119 SAMTools SNP 120272 120272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1119 SAMTools SNP 122607 122607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C415%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1119 SAMTools SNP 130950 130950 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1119 SAMTools SNP 134196 134196 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C63%2C0:99 scaffold1119 SAMTools SNP 134370 134370 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 135388 135388 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1119 SAMTools SNP 135730 135730 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 135737 135737 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 135820 135820 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1119 SAMTools SNP 135823 135823 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C51:43 scaffold1119 SAMTools SNP 138956 138956 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold1119 SAMTools SNP 138986 138986 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1119 SAMTools SNP 145490 145490 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 145536 145536 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1119 SAMTools SNP 146793 146793 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 147627 147627 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1119 SAMTools SNP 147915 147915 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1119 SAMTools SNP 148347 148347 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1119 SAMTools SNP 148350 148350 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1119 SAMTools SNP 149474 149474 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 149484 149484 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 155504 155504 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1119 SAMTools SNP 155980 155980 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1119 SAMTools SNP 157605 157605 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.55%2C0.03%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1119 SAMTools SNP 157614 157614 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.14%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1119 SAMTools SNP 159947 159947 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C93%2C0:99 scaffold1119 SAMTools SNP 160798 160798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1119 SAMTools SNP 161161 161161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 164760 164760 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1119 SAMTools SNP 164790 164790 3.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1119 SAMTools SNP 166235 166235 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1119 SAMTools SNP 182457 182457 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C200:33 scaffold1119 SAMTools SNP 197004 197004 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C42:45 scaffold1119 SAMTools SNP 197429 197429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1119 SAMTools SNP 197525 197525 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1119 SAMTools SNP 223874 223874 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1119 SAMTools SNP 223922 223922 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1119 SAMTools SNP 224301 224301 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C45%2C0:87 scaffold1119 SAMTools SNP 226184 226184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D44%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1119 SAMTools SNP 226214 226214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D45%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1119 SAMTools SNP 227004 227004 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1121 SAMTools SNP 3246 3246 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1121 SAMTools SNP 3302 3302 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1121 SAMTools SNP 5004 5004 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1121 SAMTools SNP 12063 12063 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1121 SAMTools SNP 12089 12089 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1121 SAMTools SNP 32671 32671 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C40%2C1%3BMQ%3D49%3BFQ%3D18.1%3BPV4%3D1%2C6.7e-64%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C178:48 scaffold1121 SAMTools SNP 32796 32796 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C48%3BMQ%3D49%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1121 SAMTools SNP 36262 36262 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C96%2C82%2C132%3BMQ%3D50%3BFQ%3D114%3BPV4%3D2.5e-16%2C1.7e-223%2C1%2C9.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C204:99 scaffold1121 SAMTools SNP 36442 36442 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1121 SAMTools SNP 36727 36727 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C18%2C17%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.011%2C3.1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1121 SAMTools SNP 36767 36767 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold1121 SAMTools SNP 36976 36976 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C26%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.6e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1121 SAMTools SNP 37186 37186 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C255%2C0:99 scaffold1121 SAMTools SNP 37357 37357 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C184%2C0:99 scaffold1121 SAMTools SNP 37369 37369 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1121 SAMTools SNP 37725 37725 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.097%2C0.19%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C245:99 scaffold1121 SAMTools SNP 37736 37736 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.08%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C218:99 scaffold1121 SAMTools SNP 37758 37758 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.28%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1121 SAMTools SNP 38112 38112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1121 SAMTools SNP 38115 38115 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1121 SAMTools SNP 41981 41981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C57%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1121 SAMTools SNP 42071 42071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1121 SAMTools SNP 42394 42394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1121 SAMTools SNP 42409 42409 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0101%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.26%2C0.1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1121 SAMTools SNP 42763 42763 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1121 SAMTools SNP 42853 42853 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1121 SAMTools SNP 42858 42858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1121 SAMTools SNP 46398 46398 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1121 SAMTools SNP 46482 46482 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C7%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.34%2C0.00041%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1121 SAMTools SNP 46509 46509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1121 SAMTools SNP 47000 47000 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1121 SAMTools SNP 47072 47072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1121 SAMTools SNP 50085 50085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C35%2C38%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 52807 52807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C79%2C20%2C93%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.71%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 54558 54558 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1121 SAMTools SNP 54575 54575 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1121 SAMTools SNP 56750 56750 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 56774 56774 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C20%2C21%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 57667 57667 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 57783 57783 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1121 SAMTools SNP 58964 58964 87.5 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C47%2C35%2C115%2C0%2C112:21 scaffold1121 SAMTools SNP 58969 58969 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C29%2C36%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 59925 59925 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1121 SAMTools SNP 64180 64180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 68748 68748 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C130:33 scaffold1121 SAMTools SNP 73995 73995 39.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1121 SAMTools SNP 74217 74217 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1121 SAMTools SNP 74768 74768 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold1121 SAMTools SNP 85154 85154 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1121 SAMTools SNP 85995 85995 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1121 SAMTools SNP 86589 86589 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1121 SAMTools SNP 86735 86735 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1121 SAMTools SNP 86745 86745 168 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1121 SAMTools SNP 86762 86762 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 88221 88221 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.062%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 88260 88260 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.46%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1121 SAMTools SNP 88290 88290 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1121 SAMTools SNP 88299 88299 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold1121 SAMTools SNP 88329 88329 152 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C0.25%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1121 SAMTools SNP 89762 89762 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C22%2C3%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C1%2C0.37%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 89783 89783 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D45%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1121 SAMTools SNP 89852 89852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1121 SAMTools SNP 90138 90138 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C25%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.037%2C1%2C0.29%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 90796 90796 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1121 SAMTools SNP 91708 91708 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C60%2C0:99 scaffold1121 SAMTools SNP 93199 93199 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1121 SAMTools SNP 93858 93858 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1121 SAMTools SNP 93869 93869 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1121 SAMTools SNP 93935 93935 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1121 SAMTools SNP 94164 94164 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1121 SAMTools SNP 94226 94226 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1121 SAMTools SNP 94233 94233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1121 SAMTools SNP 94912 94912 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.16%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C69:72 scaffold1121 SAMTools SNP 95029 95029 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.2%3BPV4%3D0.14%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C121:99 scaffold1121 SAMTools SNP 95298 95298 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.39%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1121 SAMTools SNP 96145 96145 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1121 SAMTools SNP 96214 96214 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 98528 98528 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0062%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C85:88 scaffold1121 SAMTools SNP 98532 98532 52.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1121 SAMTools SNP 99695 99695 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C39%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C3e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1121 SAMTools SNP 99995 99995 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C48%2C0:78 scaffold1121 SAMTools SNP 100092 100092 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0005%2C3.4e-09%2C1%2C3.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C145:99 scaffold1121 SAMTools SNP 100368 100368 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold1121 SAMTools SNP 101655 101655 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1121 SAMTools SNP 102383 102383 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1121 SAMTools SNP 122650 122650 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.018%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold1121 SAMTools SNP 124789 124789 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1121 SAMTools SNP 128863 128863 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1121 SAMTools SNP 131426 131426 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1121 SAMTools SNP 131721 131721 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1121 SAMTools SNP 131751 131751 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1121 SAMTools SNP 131796 131796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1121 SAMTools SNP 132080 132080 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1121 SAMTools SNP 132110 132110 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1121 SAMTools SNP 132409 132409 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.2%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 132434 132434 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1121 SAMTools SNP 133888 133888 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1121 SAMTools SNP 136031 136031 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C5.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C235:57 scaffold1121 SAMTools SNP 139784 139784 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1121 SAMTools SNP 139802 139802 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1121 SAMTools SNP 142286 142286 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1121 SAMTools SNP 144753 144753 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1121 SAMTools SNP 144903 144903 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1123 SAMTools SNP 5320 5320 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1123 SAMTools SNP 6042 6042 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1123 SAMTools SNP 6872 6872 5.46 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1123 SAMTools SNP 19436 19436 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1123 SAMTools SNP 19463 19463 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1123 SAMTools SNP 21309 21309 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold1123 SAMTools SNP 21597 21597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1123 SAMTools SNP 21636 21636 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1123 SAMTools SNP 34478 34478 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1123 SAMTools SNP 38776 38776 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1123 SAMTools SNP 41246 41246 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1123 SAMTools SNP 45121 45121 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1123 SAMTools SNP 45145 45145 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C18%2C0:33 scaffold1123 SAMTools SNP 138900 138900 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1123 SAMTools SNP 150305 150305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C13%2C39%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C0.43%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1123 SAMTools SNP 156882 156882 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold1123 SAMTools SNP 157304 157304 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C30%2C0:57 scaffold1123 SAMTools SNP 157527 157527 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1123 SAMTools SNP 218343 218343 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1123 SAMTools SNP 218410 218410 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1123 SAMTools SNP 218570 218570 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1123 SAMTools SNP 218598 218598 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1123 SAMTools SNP 218781 218781 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1123 SAMTools SNP 220507 220507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1123 SAMTools SNP 221197 221197 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold1123 SAMTools SNP 247240 247240 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1123 SAMTools SNP 247580 247580 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1123 SAMTools SNP 248226 248226 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.017%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1123 SAMTools SNP 248243 248243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1123 SAMTools SNP 263023 263023 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1123 SAMTools SNP 263586 263586 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1123 SAMTools SNP 263779 263779 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1123 SAMTools SNP 264038 264038 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1123 SAMTools SNP 266035 266035 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1123 SAMTools SNP 335404 335404 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D48%3BFQ%3D48%3BPV4%3D1%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C127:78 scaffold1123 SAMTools SNP 335424 335424 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1123 SAMTools SNP 336509 336509 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C80%3BMQ%3D46%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C241%2C0:99 scaffold1123 SAMTools SNP 336802 336802 45 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D27%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C81%2C0%2C69%2C58%2C66:99 scaffold1123 SAMTools SNP 342481 342481 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C71:49 scaffold1123 SAMTools SNP 375269 375269 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold1123 SAMTools SNP 425422 425422 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1123 SAMTools SNP 438469 438469 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1603%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C1%2C1593%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1123 SAMTools SNP 441113 441113 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2622%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C486%2C23%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1123 SAMTools SNP 441192 441192 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C919%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1123 SAMTools SNP 444333 444333 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2261%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D745%2C154%2C427%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1123 SAMTools SNP 446066 446066 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1278%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D456%2C271%2C343%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C1%2C0.13%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1123 SAMTools SNP 447346 447346 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D785%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C761%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1123 SAMTools SNP 447639 447639 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C158%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1123 SAMTools SNP 448324 448324 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1123 SAMTools SNP 551518 551518 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1123 SAMTools SNP 554526 554526 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1124 SAMTools SNP 1389 1389 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1124 SAMTools SNP 1447 1447 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1124 SAMTools SNP 9998 9998 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1124 SAMTools SNP 10030 10030 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1124 SAMTools SNP 36327 36327 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C26%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C139:99 scaffold1124 SAMTools SNP 36332 36332 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C55%2C0%2C7%3BMQ%3D48%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1124 SAMTools SNP 40430 40430 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1124 SAMTools SNP 40467 40467 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1124 SAMTools SNP 48887 48887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1124 SAMTools SNP 58387 58387 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C47%2C0%3BMQ%3D18%3BFQ%3D-144%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C117%2C0:99 scaffold1124 SAMTools SNP 58396 58396 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C147%2C0%3BMQ%3D42%3BFQ%3D-282%3BPV4%3D1%2C0.072%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1124 SAMTools SNP 58569 58569 23.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold1125 SAMTools SNP 2365 2365 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 2423 2423 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1125 SAMTools SNP 2455 2455 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 3412 3412 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1125 SAMTools SNP 3816 3816 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1125 SAMTools SNP 3972 3972 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1125 SAMTools SNP 5930 5930 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1125 SAMTools SNP 10662 10662 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1125 SAMTools SNP 13334 13334 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1125 SAMTools SNP 13357 13357 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1125 SAMTools SNP 13592 13592 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C2%3BMQ%3D47%3BFQ%3D5.47%3BPV4%3D0.025%2C0.00022%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1125 SAMTools SNP 13600 13600 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C1%3BMQ%3D47%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1125 SAMTools SNP 13801 13801 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C14%3BMQ%3D47%3BFQ%3D65%3BPV4%3D0.022%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C92:95 scaffold1125 SAMTools SNP 13802 13802 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C1%3BMQ%3D47%3BFQ%3D65%3BPV4%3D0.022%2C0.37%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C221:95 scaffold1125 SAMTools SNP 13835 13835 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C18%2C2%3BMQ%3D48%3BFQ%3D115%3BPV4%3D1.4e-05%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1125 SAMTools SNP 14014 14014 92.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1125 SAMTools SNP 14190 14190 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.048%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1125 SAMTools SNP 15042 15042 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.049%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1125 SAMTools SNP 15055 15055 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C6%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1125 SAMTools SNP 17214 17214 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 19176 19176 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1125 SAMTools SNP 19822 19822 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1125 SAMTools SNP 21953 21953 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold1125 SAMTools SNP 22310 22310 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.063%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1125 SAMTools SNP 38437 38437 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C0%2C4%3BMQ%3D49%3BFQ%3D42%3BPV4%3D0.00056%2C1%2C0.013%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1125 SAMTools SNP 38503 38503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1125 SAMTools SNP 38534 38534 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1125 SAMTools SNP 48048 48048 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 48763 48763 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1125 SAMTools SNP 48772 48772 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1125 SAMTools SNP 49869 49869 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 64324 64324 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1125 SAMTools SNP 64527 64527 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C27%2C0%3BMQ%3D49%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C250:99 scaffold1125 SAMTools SNP 64575 64575 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C35%3BMQ%3D48%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1125 SAMTools SNP 64602 64602 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C27%2C10%2C24%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 66115 66115 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D32%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C36%2C0:69 scaffold1125 SAMTools SNP 67975 67975 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1125 SAMTools SNP 68347 68347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C23%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1125 SAMTools SNP 69498 69498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C14%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.25%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 69528 69528 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C59%2C2%2C17%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1125 SAMTools SNP 69534 69534 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C59%2C1%2C17%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1125 SAMTools SNP 69940 69940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C22%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.031%2C0.42%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold1125 SAMTools SNP 69943 69943 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1125 SAMTools SNP 69967 69967 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.33%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 70727 70727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C12%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1125 SAMTools SNP 71758 71758 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0011%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1125 SAMTools SNP 71830 71830 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C57%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1125 SAMTools SNP 72432 72432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1125 SAMTools SNP 72437 72437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1125 SAMTools SNP 73145 73145 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 73175 73175 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1125 SAMTools SNP 73392 73392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1125 SAMTools SNP 74775 74775 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1125 SAMTools SNP 75794 75794 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1125 SAMTools SNP 75803 75803 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1125 SAMTools SNP 81413 81413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1125 SAMTools SNP 82860 82860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1125 SAMTools SNP 82882 82882 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1125 SAMTools SNP 85011 85011 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1125 SAMTools SNP 85014 85014 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1125 SAMTools SNP 85520 85520 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1125 SAMTools SNP 85538 85538 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.0064%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold1125 SAMTools SNP 85539 85539 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold1125 SAMTools SNP 85646 85646 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1125 SAMTools SNP 85664 85664 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 85915 85915 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C0.19%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C184:99 scaffold1125 SAMTools SNP 85930 85930 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1125 SAMTools SNP 87351 87351 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1125 SAMTools SNP 87375 87375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 87837 87837 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C71%2C19%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.43%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 88905 88905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C88%2C4%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 88956 88956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1125 SAMTools SNP 89233 89233 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C12%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D8.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1125 SAMTools SNP 89338 89338 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold1125 SAMTools SNP 89345 89345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1125 SAMTools SNP 89548 89548 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 89913 89913 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 90011 90011 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1125 SAMTools SNP 90324 90324 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1125 SAMTools SNP 90327 90327 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C226:88 scaffold1125 SAMTools SNP 90911 90911 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 91084 91084 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1.2e-05%2C0.47%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1125 SAMTools SNP 92719 92719 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 93562 93562 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 93692 93692 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1125 SAMTools SNP 93697 93697 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold1125 SAMTools SNP 94038 94038 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.37%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C239:99 scaffold1125 SAMTools SNP 95218 95218 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C106%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1125 SAMTools SNP 95233 95233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 95293 95293 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C112%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.37%2C1%2C1%2C2.3e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C29:32 scaffold1125 SAMTools SNP 95465 95465 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 95547 95547 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5018%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-7.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C21:26 scaffold1125 SAMTools SNP 97375 97375 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1125 SAMTools SNP 97468 97468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1125 SAMTools SNP 97474 97474 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 98184 98184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 98211 98211 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 98214 98214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C0.39%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 98777 98777 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.33%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C242:99 scaffold1125 SAMTools SNP 99005 99005 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1125 SAMTools SNP 99252 99252 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1125 SAMTools SNP 99741 99741 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1125 SAMTools SNP 99769 99769 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1125 SAMTools SNP 100031 100031 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1125 SAMTools SNP 100048 100048 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1125 SAMTools SNP 100363 100363 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1125 SAMTools SNP 100566 100566 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1125 SAMTools SNP 101018 101018 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 102969 102969 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1125 SAMTools SNP 103167 103167 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1125 SAMTools SNP 103190 103190 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1125 SAMTools SNP 103480 103480 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1125 SAMTools SNP 107711 107711 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1125 SAMTools SNP 108053 108053 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1125 SAMTools SNP 108727 108727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1125 SAMTools SNP 111334 111334 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1125 SAMTools SNP 112196 112196 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1125 SAMTools SNP 127585 127585 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1125 SAMTools SNP 127628 127628 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1125 SAMTools SNP 127899 127899 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1125 SAMTools SNP 129667 129667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1125 SAMTools SNP 129673 129673 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1125 SAMTools SNP 129727 129727 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1125 SAMTools SNP 130356 130356 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C39%2C0:75 scaffold1125 SAMTools SNP 130944 130944 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1125 SAMTools SNP 130947 130947 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.54%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1125 SAMTools SNP 130956 130956 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.54%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1125 SAMTools SNP 131959 131959 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 132780 132780 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1125 SAMTools SNP 132822 132822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1125 SAMTools SNP 132847 132847 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1125 SAMTools SNP 135520 135520 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1125 SAMTools SNP 136074 136074 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1125 SAMTools SNP 136134 136134 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C27%2C0:51 scaffold1125 SAMTools SNP 136549 136549 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.021%2C0.45%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1125 SAMTools SNP 136592 136592 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1125 SAMTools SNP 136830 136830 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C6.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C240:62 scaffold1125 SAMTools SNP 138353 138353 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1125 SAMTools SNP 138996 138996 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1125 SAMTools SNP 139005 139005 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1125 SAMTools SNP 139041 139041 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1125 SAMTools SNP 139062 139062 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1125 SAMTools SNP 140694 140694 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C3%2C31%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.082%2C1.2e-86%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1125 SAMTools SNP 140769 140769 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C6.7e-20%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 140882 140882 10.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold1125 SAMTools SNP 141474 141474 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C42%2C0:81 scaffold1125 SAMTools SNP 142264 142264 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1125 SAMTools SNP 142278 142278 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.074%2C0.38%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1125 SAMTools SNP 142843 142843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.15%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 143854 143854 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1125 SAMTools SNP 143962 143962 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C12%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.00042%2C8.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1125 SAMTools SNP 143995 143995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.48%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 145317 145317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 145521 145521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C32%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold1125 SAMTools SNP 145548 145548 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C7%2C97%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 147540 147540 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C99%2C0%2C38%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1125 SAMTools SNP 147589 147589 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C87%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1125 SAMTools SNP 152192 152192 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 153588 153588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 153752 153752 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C19%3BMQ%3D49%3BFQ%3D188%3BPV4%3D0.21%2C4.9e-12%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1125 SAMTools SNP 159241 159241 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1125 SAMTools SNP 159328 159328 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1125 SAMTools SNP 159659 159659 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1125 SAMTools SNP 167242 167242 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C7%3BMQ%3D43%3BFQ%3D35%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C62:65 scaffold1125 SAMTools SNP 167864 167864 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1125 SAMTools SNP 170651 170651 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1125 SAMTools SNP 171126 171126 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.00046%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C208:39 scaffold1125 SAMTools SNP 172528 172528 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1125 SAMTools SNP 176422 176422 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 176428 176428 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 176856 176856 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1125 SAMTools SNP 176869 176869 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1125 SAMTools SNP 179071 179071 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0049%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1125 SAMTools SNP 181325 181325 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold1125 SAMTools SNP 182295 182295 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C109:80 scaffold1125 SAMTools SNP 186908 186908 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 186939 186939 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1125 SAMTools SNP 187147 187147 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1125 SAMTools SNP 187159 187159 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1125 SAMTools SNP 187210 187210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1125 SAMTools SNP 187245 187245 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1125 SAMTools SNP 187733 187733 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 188455 188455 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1125 SAMTools SNP 188480 188480 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1125 SAMTools SNP 188895 188895 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1125 SAMTools SNP 190985 190985 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1125 SAMTools SNP 192094 192094 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1125 SAMTools SNP 195227 195227 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1125 SAMTools SNP 195266 195266 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1125 SAMTools SNP 195308 195308 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C21%2C2%3BMQ%3D50%3BFQ%3D213%3BPV4%3D2.6e-10%2C0.19%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1125 SAMTools SNP 195590 195590 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1125 SAMTools SNP 195624 195624 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.051%2C4.7e-05%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1125 SAMTools SNP 195650 195650 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1125 SAMTools SNP 195692 195692 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.4e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1125 SAMTools SNP 195968 195968 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.26%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1125 SAMTools SNP 196391 196391 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C18:21 scaffold1125 SAMTools SNP 196442 196442 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.00044%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C225:99 scaffold1125 SAMTools SNP 196988 196988 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.27%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 197117 197117 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C187:42 scaffold1125 SAMTools SNP 197502 197502 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1125 SAMTools SNP 197538 197538 135 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C87%2C71%2C166%2C0%2C160:29 scaffold1125 SAMTools SNP 197556 197556 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C27%2C0:51 scaffold1125 SAMTools SNP 198453 198453 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C38:41 scaffold1125 SAMTools SNP 198521 198521 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1125 SAMTools SNP 199704 199704 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1125 SAMTools SNP 199716 199716 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 200133 200133 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C11%2C311%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 200650 200650 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1125 SAMTools SNP 201733 201733 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0302%3BAF1%3D0.5007%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.43%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C24:27 scaffold1125 SAMTools SNP 201828 201828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C10%2C191%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 202427 202427 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C29%2C262%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.17%2C1.8e-216%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1125 SAMTools SNP 202532 202532 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D788%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C285%2C89%2C259%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.078%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1125 SAMTools SNP 202649 202649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D543%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C187%2C61%2C201%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 202661 202661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C228%2C73%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 203075 203075 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C261%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 203413 203413 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C114%2C61%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C8.8e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 203578 203578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D568%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C208%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 203608 203608 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D503%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C88%2C218%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 205313 205313 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D662%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C242%2C65%2C285%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C3.1e-50%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 205924 205924 114 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold1125 SAMTools SNP 205971 205971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1125 SAMTools SNP 206148 206148 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.28%2C1%2C1%2C7.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1125 SAMTools SNP 206173 206173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C351%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 207996 207996 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C3%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1125 SAMTools SNP 208263 208263 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D44%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1125 SAMTools SNP 208302 208302 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C17%3BMQ%3D25%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 209216 209216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C56%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1125 SAMTools SNP 216571 216571 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1125 SAMTools SNP 216661 216661 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1125 SAMTools SNP 217074 217074 101 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C121%2C222%2C0%2C210:51 scaffold1125 SAMTools SNP 219685 219685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1125 SAMTools SNP 223234 223234 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C54%2C0:99 scaffold1125 SAMTools SNP 225837 225837 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C54%2C0:99 scaffold1125 SAMTools SNP 226172 226172 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold1125 SAMTools SNP 226211 226211 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1125 SAMTools SNP 226696 226696 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C54%2C0:99 scaffold1125 SAMTools SNP 226745 226745 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1125 SAMTools SNP 226934 226934 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.59%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C247:99 scaffold1125 SAMTools SNP 226982 226982 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C253:99 scaffold1125 SAMTools SNP 227405 227405 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C218:99 scaffold1125 SAMTools SNP 227519 227519 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C2.1e-13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C237:83 scaffold1125 SAMTools SNP 228023 228023 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C75%2C0:99 scaffold1125 SAMTools SNP 233484 233484 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1125 SAMTools SNP 233808 233808 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1125 SAMTools SNP 237752 237752 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.053%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1125 SAMTools SNP 237821 237821 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1125 SAMTools SNP 239209 239209 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1125 SAMTools SNP 244727 244727 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 260222 260222 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold1125 SAMTools SNP 260236 260236 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1125 SAMTools SNP 262199 262199 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold1125 SAMTools SNP 265386 265386 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1125 SAMTools SNP 265653 265653 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1125 SAMTools SNP 265711 265711 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1125 SAMTools SNP 272804 272804 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1125 SAMTools SNP 278418 278418 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1125 SAMTools SNP 278597 278597 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold1125 SAMTools SNP 278780 278780 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1125 SAMTools SNP 278923 278923 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 278956 278956 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1125 SAMTools SNP 284645 284645 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1125 SAMTools SNP 286331 286331 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1125 SAMTools SNP 286631 286631 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1125 SAMTools SNP 286660 286660 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1125 SAMTools SNP 289087 289087 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1125 SAMTools SNP 289141 289141 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.01%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C27:30 scaffold1125 SAMTools SNP 289470 289470 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1125 SAMTools SNP 289775 289775 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1127 SAMTools SNP 6885 6885 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1127 SAMTools SNP 8364 8364 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.45%2C2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1127 SAMTools SNP 8427 8427 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C22%3BMQ%3D49%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1127 SAMTools SNP 10551 10551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C6%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 10572 10572 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C13%3BMQ%3D48%3BFQ%3D102%3BPV4%3D0.23%2C1%2C0.1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1127 SAMTools SNP 10581 10581 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C0%2C7%3BMQ%3D47%3BFQ%3D20.1%3BPV4%3D1%2C0.0041%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C251:50 scaffold1127 SAMTools SNP 27698 27698 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1127 SAMTools SNP 35785 35785 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1127 SAMTools SNP 36078 36078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C26%2C7%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.037%2C7.3e-28%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 40861 40861 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.37%2C2.5e-10%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold1127 SAMTools SNP 43977 43977 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1127 SAMTools SNP 44014 44014 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1127 SAMTools SNP 44394 44394 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1127 SAMTools SNP 45260 45260 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1127 SAMTools SNP 45482 45482 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 51819 51819 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0059%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1127 SAMTools SNP 51852 51852 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1127 SAMTools SNP 51897 51897 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C81%2C0:99 scaffold1127 SAMTools SNP 51993 51993 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1127 SAMTools SNP 52083 52083 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 52086 52086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 56268 56268 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1127 SAMTools SNP 64879 64879 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold1127 SAMTools SNP 64898 64898 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1127 SAMTools SNP 64927 64927 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 64960 64960 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1127 SAMTools SNP 67096 67096 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1127 SAMTools SNP 67134 67134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1127 SAMTools SNP 68136 68136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1127 SAMTools SNP 68187 68187 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C24%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1127 SAMTools SNP 69435 69435 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C197:43 scaffold1127 SAMTools SNP 71615 71615 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1127 SAMTools SNP 71633 71633 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.092%2C0.0038%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C192:99 scaffold1127 SAMTools SNP 71654 71654 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1127 SAMTools SNP 73713 73713 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C27%2C0:51 scaffold1127 SAMTools SNP 75893 75893 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1127 SAMTools SNP 76561 76561 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C26:29 scaffold1127 SAMTools SNP 76690 76690 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.099%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1127 SAMTools SNP 76705 76705 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1127 SAMTools SNP 77854 77854 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1127 SAMTools SNP 79023 79023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 79119 79119 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C15%2C16%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.33%2C3.7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1127 SAMTools SNP 79293 79293 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C45%2C1%2C11%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C6.6e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1127 SAMTools SNP 79527 79527 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C30%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 83914 83914 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 83962 83962 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold1127 SAMTools SNP 85353 85353 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1127 SAMTools SNP 85413 85413 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 85449 85449 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold1127 SAMTools SNP 85461 85461 55.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1127 SAMTools SNP 85536 85536 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1127 SAMTools SNP 86130 86130 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1127 SAMTools SNP 86156 86156 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1127 SAMTools SNP 86980 86980 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.042%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1127 SAMTools SNP 87179 87179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 88381 88381 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1127 SAMTools SNP 100856 100856 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1127 SAMTools SNP 100897 100897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C58%2C29%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 101602 101602 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C69%2C1%2C38%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1127 SAMTools SNP 101632 101632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C65%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1127 SAMTools SNP 102255 102255 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold1127 SAMTools SNP 102272 102272 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1127 SAMTools SNP 102728 102728 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1127 SAMTools SNP 102733 102733 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1127 SAMTools SNP 103866 103866 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 103944 103944 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C25%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C220%2C0:99 scaffold1127 SAMTools SNP 104040 104040 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C17%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 105937 105937 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1127 SAMTools SNP 106343 106343 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1127 SAMTools SNP 106394 106394 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C153:30 scaffold1127 SAMTools SNP 107095 107095 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold1127 SAMTools SNP 107862 107862 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1127 SAMTools SNP 108367 108367 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold1127 SAMTools SNP 108406 108406 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1127 SAMTools SNP 108493 108493 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1127 SAMTools SNP 108828 108828 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1127 SAMTools SNP 108924 108924 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1127 SAMTools SNP 108930 108930 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1127 SAMTools SNP 109539 109539 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1127 SAMTools SNP 109581 109581 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1127 SAMTools SNP 110190 110190 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C154:99 scaffold1127 SAMTools SNP 114925 114925 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1127 SAMTools SNP 126566 126566 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 127258 127258 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C216:99 scaffold1127 SAMTools SNP 128147 128147 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1127 SAMTools SNP 128996 128996 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1127 SAMTools SNP 131401 131401 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1127 SAMTools SNP 131806 131806 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1127 SAMTools SNP 142704 142704 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1127 SAMTools SNP 143365 143365 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1127 SAMTools SNP 149397 149397 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C297%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1127 SAMTools SNP 151435 151435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C171%2C2%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C0.13%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 167299 167299 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 171314 171314 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1127 SAMTools SNP 171330 171330 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1127 SAMTools SNP 171412 171412 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1127 SAMTools SNP 171439 171439 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0116%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1127 SAMTools SNP 171974 171974 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1127 SAMTools SNP 171999 171999 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1127 SAMTools SNP 195743 195743 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1127 SAMTools SNP 196248 196248 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold1127 SAMTools SNP 196276 196276 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1127 SAMTools SNP 197288 197288 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1127 SAMTools SNP 197297 197297 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1127 SAMTools SNP 208921 208921 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D36.6%3BPV4%3D1%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C69:67 scaffold1127 SAMTools SNP 209104 209104 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C63%2C0:99 scaffold1127 SAMTools SNP 209734 209734 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1127 SAMTools SNP 209788 209788 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.34%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1127 SAMTools SNP 209986 209986 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C42%2C0:81 scaffold1127 SAMTools SNP 210025 210025 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1127 SAMTools SNP 213631 213631 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C27%2C0:51 scaffold1127 SAMTools SNP 213678 213678 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C33%2C0:63 scaffold1127 SAMTools SNP 214942 214942 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C0.28%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C250:99 scaffold1127 SAMTools SNP 215279 215279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1127 SAMTools SNP 215311 215311 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D48%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C231:99 scaffold1127 SAMTools SNP 218048 218048 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1127 SAMTools SNP 224049 224049 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 224162 224162 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1127 SAMTools SNP 232490 232490 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.35%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1127 SAMTools SNP 233414 233414 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1127 SAMTools SNP 233420 233420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C80%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1127 SAMTools SNP 236013 236013 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1127 SAMTools SNP 240476 240476 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 242384 242384 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C98%2C12%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 242389 242389 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C98%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.057%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 242449 242449 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 243340 243340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 243418 243418 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C154:74 scaffold1127 SAMTools SNP 243424 243424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1127 SAMTools SNP 244713 244713 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00013%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C223:39 scaffold1127 SAMTools SNP 244926 244926 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C54%2C0:99 scaffold1127 SAMTools SNP 245381 245381 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C44%2C32%2C52%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.5e-09%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 245474 245474 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C10%2C8%3BMQ%3D32%3BFQ%3D88%3BPV4%3D0.14%2C0.34%2C0.0038%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C190:99 scaffold1127 SAMTools SNP 245666 245666 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C12%2C134%3BMQ%3D46%3BFQ%3D18.1%3BPV4%3D8.8e-06%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1127 SAMTools SNP 246336 246336 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.62%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1127 SAMTools SNP 248984 248984 64.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold1127 SAMTools SNP 250282 250282 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C90%2C22%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 250644 250644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C90%2C1%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 253528 253528 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C72%2C10%2C11%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.82%2C1e-15%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1127 SAMTools SNP 255175 255175 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1127 SAMTools SNP 255184 255184 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.083%2C0.014%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold1127 SAMTools SNP 255486 255486 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.15%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1127 SAMTools SNP 256245 256245 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.033%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 256261 256261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1127 SAMTools SNP 256787 256787 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.31%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1127 SAMTools SNP 257554 257554 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C113%2C0%2C32%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.12%2C2.5e-20%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1127 SAMTools SNP 258074 258074 75.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold1127 SAMTools SNP 258077 258077 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 258113 258113 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C25%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.9e-05%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1127 SAMTools SNP 258630 258630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C39%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1127 SAMTools SNP 258707 258707 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C23%2C23%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 258981 258981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C5.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 259213 259213 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.057%2C0.0073%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1127 SAMTools SNP 259225 259225 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.18%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1127 SAMTools SNP 259573 259573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1127 SAMTools SNP 259578 259578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 260854 260854 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1127 SAMTools SNP 261983 261983 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1127 SAMTools SNP 266179 266179 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C22%2C67%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00014%2C2.3e-13%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1127 SAMTools SNP 266192 266192 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C35%2C63%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1.7e-09%2C3.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1127 SAMTools SNP 267148 267148 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1127 SAMTools SNP 268824 268824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C89%2C25%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1127 SAMTools SNP 268886 268886 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1128 SAMTools SNP 2863 2863 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1128 SAMTools SNP 3364 3364 31.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1128 SAMTools SNP 4663 4663 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1128 SAMTools SNP 4754 4754 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1128 SAMTools SNP 4910 4910 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1128 SAMTools SNP 5045 5045 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1128 SAMTools SNP 5515 5515 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1128 SAMTools SNP 5585 5585 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1128 SAMTools SNP 5610 5610 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1128 SAMTools SNP 5906 5906 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1128 SAMTools SNP 7713 7713 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1128 SAMTools SNP 8193 8193 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1128 SAMTools SNP 8684 8684 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1128 SAMTools SNP 8726 8726 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C238:99 scaffold1128 SAMTools SNP 9593 9593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 9608 9608 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C36%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1128 SAMTools SNP 9617 9617 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C1%2C12%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.24%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1128 SAMTools SNP 10142 10142 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.035%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 10148 10148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1128 SAMTools SNP 10196 10196 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C31%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1128 SAMTools SNP 10789 10789 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1128 SAMTools SNP 10852 10852 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1128 SAMTools SNP 11268 11268 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1128 SAMTools SNP 11298 11298 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1128 SAMTools SNP 11346 11346 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 11530 11530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C2%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1128 SAMTools SNP 11620 11620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C2%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 11644 11644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 12171 12171 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 12174 12174 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 12202 12202 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C9%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1128 SAMTools SNP 12737 12737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C6%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1128 SAMTools SNP 14233 14233 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1128 SAMTools SNP 14257 14257 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1128 SAMTools SNP 18437 18437 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C0%2C34%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1128 SAMTools SNP 18470 18470 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C230:41 scaffold1128 SAMTools SNP 22163 22163 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1128 SAMTools SNP 22179 22179 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1128 SAMTools SNP 22238 22238 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C45%2C0%2C32%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C4.6e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1128 SAMTools SNP 23030 23030 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.46%2C5.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1128 SAMTools SNP 23045 23045 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C45%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1128 SAMTools SNP 23277 23277 11.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1128 SAMTools SNP 29896 29896 16.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C4.6e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C17%2C0:28 scaffold113 SAMTools SNP 20326 20326 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 20350 20350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 20404 20404 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 20440 20440 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 27848 27848 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold113 SAMTools SNP 39907 39907 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold113 SAMTools SNP 50015 50015 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold113 SAMTools SNP 58294 58294 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold113 SAMTools SNP 107030 107030 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold113 SAMTools SNP 107038 107038 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold113 SAMTools SNP 107358 107358 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold113 SAMTools SNP 108054 108054 18.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold113 SAMTools SNP 108381 108381 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 110801 110801 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold113 SAMTools SNP 110847 110847 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold113 SAMTools SNP 113827 113827 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 113887 113887 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold113 SAMTools SNP 122738 122738 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold113 SAMTools SNP 122763 122763 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold113 SAMTools SNP 167945 167945 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D1%2C2.2e-26%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C143%2C0:99 scaffold113 SAMTools SNP 168049 168049 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold113 SAMTools SNP 174402 174402 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold113 SAMTools SNP 174407 174407 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold113 SAMTools SNP 174440 174440 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold113 SAMTools SNP 174446 174446 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C18:21 scaffold113 SAMTools SNP 175116 175116 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.26%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold113 SAMTools SNP 175770 175770 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold113 SAMTools SNP 178002 178002 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold113 SAMTools SNP 179895 179895 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C5%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold113 SAMTools SNP 179908 179908 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.011%2C0.00025%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold113 SAMTools SNP 181609 181609 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C23%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.28%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C82:85 scaffold113 SAMTools SNP 181612 181612 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C237:99 scaffold113 SAMTools SNP 181619 181619 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold113 SAMTools SNP 205161 205161 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold113 SAMTools SNP 272279 272279 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 272528 272528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 284933 284933 4.76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D2%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C51%2C0:41 scaffold113 SAMTools SNP 286207 286207 4.76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D2%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C51%2C0:41 scaffold113 SAMTools SNP 287248 287248 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C54%2C0:99 scaffold113 SAMTools SNP 287263 287263 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold113 SAMTools SNP 287287 287287 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold113 SAMTools SNP 287311 287311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold113 SAMTools SNP 288656 288656 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold113 SAMTools SNP 289628 289628 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.092%2C0.49%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold113 SAMTools SNP 289660 289660 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C9%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold113 SAMTools SNP 290222 290222 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold113 SAMTools SNP 290990 290990 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C22%2C39%3BMQ%3D50%3BFQ%3D115%3BPV4%3D3.3e-06%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold113 SAMTools SNP 291002 291002 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C35%2C15%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1.1e-05%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold113 SAMTools SNP 291020 291020 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C15%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0024%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold113 SAMTools SNP 291055 291055 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C32:35 scaffold113 SAMTools SNP 291412 291412 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C248:99 scaffold113 SAMTools SNP 292923 292923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold113 SAMTools SNP 294407 294407 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold113 SAMTools SNP 294545 294545 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold113 SAMTools SNP 295265 295265 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold113 SAMTools SNP 295944 295944 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold113 SAMTools SNP 296542 296542 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold113 SAMTools SNP 296572 296572 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold113 SAMTools SNP 297256 297256 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C78:79 scaffold113 SAMTools SNP 297265 297265 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C192:31 scaffold113 SAMTools SNP 297350 297350 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold113 SAMTools SNP 297831 297831 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.077%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold113 SAMTools SNP 298593 298593 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold113 SAMTools SNP 298612 298612 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 308652 308652 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.0017%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold113 SAMTools SNP 308744 308744 34.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold113 SAMTools SNP 319173 319173 17.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D0.25%2C0.39%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C5%2C0:8 scaffold113 SAMTools SNP 319215 319215 45.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C0%3BMQ%3D27%3BFQ%3D-47%3BPV4%3D0.071%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C83%2C63%2C75%2C0%2C67:37 scaffold113 SAMTools SNP 320050 320050 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C208%2C2%3BMQ%3D8%3BFQ%3D-282%3BPV4%3D0.014%2C0.48%2C8.3e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C255%2C0:99 scaffold113 SAMTools SNP 320290 320290 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold113 SAMTools SNP 320356 320356 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold113 SAMTools SNP 321904 321904 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold113 SAMTools SNP 321914 321914 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold113 SAMTools SNP 322108 322108 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C3%3BMQ%3D43%3BFQ%3D90%3BPV4%3D1%2C0.079%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold113 SAMTools SNP 322115 322115 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C9%3BMQ%3D44%3BFQ%3D216%3BPV4%3D1%2C0.37%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold113 SAMTools SNP 322514 322514 39.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold113 SAMTools SNP 325676 325676 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C35%3BMQ%3D46%3BFQ%3D190%3BPV4%3D1.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold113 SAMTools SNP 332245 332245 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 332247 332247 98 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C0%3BMQ%3D37%3BFQ%3D56%3BPV4%3D1%2C0.099%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C33%2C116%2C58%2C0%2C138:86 scaffold113 SAMTools SNP 332268 332268 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C48%2C0%3BMQ%3D30%3BFQ%3D-134%3BPV4%3D1%2C1%2C0.096%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C107%2C0:99 scaffold113 SAMTools SNP 332705 332705 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C18%2C0%3BMQ%3D32%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C190:99 scaffold113 SAMTools SNP 333749 333749 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C3%3BMQ%3D10%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0:99 scaffold113 SAMTools SNP 334035 334035 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D25%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C36%2C0:69 scaffold113 SAMTools SNP 334044 334044 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C52%3BMQ%3D16%3BFQ%3D-181%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C154%2C0:99 scaffold113 SAMTools SNP 341837 341837 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold113 SAMTools SNP 342371 342371 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C99%2C0:99 scaffold113 SAMTools SNP 342448 342448 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0046%2C1%2C1%2C9.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold113 SAMTools SNP 342508 342508 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C53%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold113 SAMTools SNP 343277 343277 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold113 SAMTools SNP 346237 346237 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold113 SAMTools SNP 358459 358459 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold113 SAMTools SNP 358654 358654 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold113 SAMTools SNP 408182 408182 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 408550 408550 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 408614 408614 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold113 SAMTools SNP 562310 562310 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C18%3BMQ%3D47%3BFQ%3D8.65%3BPV4%3D1%2C2.5e-38%2C0.2%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C225:36 scaffold113 SAMTools SNP 597338 597338 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold113 SAMTools SNP 597876 597876 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.0027%2C0.44%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C162:99 scaffold113 SAMTools SNP 599270 599270 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold113 SAMTools SNP 599288 599288 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.22%2C0.027%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C191:37 scaffold113 SAMTools SNP 599372 599372 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C178:76 scaffold113 SAMTools SNP 599687 599687 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold113 SAMTools SNP 599706 599706 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold113 SAMTools SNP 619487 619487 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold113 SAMTools SNP 619521 619521 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold113 SAMTools SNP 620368 620368 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold113 SAMTools SNP 620369 620369 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold113 SAMTools SNP 629402 629402 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold113 SAMTools SNP 629450 629450 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold113 SAMTools SNP 629716 629716 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C195:99 scaffold113 SAMTools SNP 630267 630267 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.24%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C218:99 scaffold113 SAMTools SNP 631263 631263 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.24%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C175:99 scaffold113 SAMTools SNP 638332 638332 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.02%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C242:99 scaffold113 SAMTools SNP 638350 638350 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold113 SAMTools SNP 638370 638370 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C212:99 scaffold113 SAMTools SNP 643725 643725 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold113 SAMTools SNP 643731 643731 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold113 SAMTools SNP 644589 644589 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C28%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 645248 645248 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold113 SAMTools SNP 645389 645389 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C64%2C12%3BMQ%3D50%3BFQ%3D83%3BPV4%3D9.1e-07%2C1.3e-52%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold113 SAMTools SNP 645670 645670 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold113 SAMTools SNP 647493 647493 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C85%2C80%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 647496 647496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C161%2C29%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 647502 647502 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C165%2C27%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 655694 655694 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C137%2C7%2C48%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.43%2C2.2e-13%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold113 SAMTools SNP 657064 657064 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C42%2C14%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 657131 657131 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D5.7e-10%2C5.8e-11%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold113 SAMTools SNP 657840 657840 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C186%2C19%2C143%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold113 SAMTools SNP 660114 660114 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D939%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C468%2C6%2C310%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.15%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold113 SAMTools SNP 668139 668139 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold113 SAMTools SNP 668441 668441 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold113 SAMTools SNP 669580 669580 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold113 SAMTools SNP 669911 669911 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold113 SAMTools SNP 670062 670062 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold113 SAMTools SNP 671170 671170 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.035%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold113 SAMTools SNP 671185 671185 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.026%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold113 SAMTools SNP 671218 671218 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold113 SAMTools SNP 671774 671774 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.021%2C0.14%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold113 SAMTools SNP 671805 671805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1131 SAMTools SNP 2132 2132 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1131 SAMTools SNP 2688 2688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1131 SAMTools SNP 2706 2706 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1131 SAMTools SNP 3006 3006 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.015%2C0.33%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1131 SAMTools SNP 3025 3025 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.011%2C0.0019%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1131 SAMTools SNP 3028 3028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1131 SAMTools SNP 3282 3282 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1131 SAMTools SNP 3339 3339 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1131 SAMTools SNP 3365 3365 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1131 SAMTools SNP 3893 3893 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1131 SAMTools SNP 4023 4023 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1131 SAMTools SNP 4191 4191 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1131 SAMTools SNP 4681 4681 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1131 SAMTools SNP 5173 5173 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C26%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.37%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1131 SAMTools SNP 5189 5189 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C11%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.33%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C247:99 scaffold1131 SAMTools SNP 5825 5825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1131 SAMTools SNP 5840 5840 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1131 SAMTools SNP 5936 5936 86.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold1131 SAMTools SNP 5942 5942 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1131 SAMTools SNP 7373 7373 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1131 SAMTools SNP 8157 8157 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D44%3BFQ%3D77%3BPV4%3D1%2C0.37%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C190:99 scaffold1131 SAMTools SNP 8542 8542 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1131 SAMTools SNP 10258 10258 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1131 SAMTools SNP 10264 10264 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1131 SAMTools SNP 11590 11590 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold1131 SAMTools SNP 14983 14983 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1131 SAMTools SNP 14984 14984 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1131 SAMTools SNP 15510 15510 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1131 SAMTools SNP 15525 15525 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.61%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1131 SAMTools SNP 15615 15615 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C9%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1131 SAMTools SNP 16188 16188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1131 SAMTools SNP 19064 19064 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.029%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1131 SAMTools SNP 19074 19074 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1131 SAMTools SNP 19997 19997 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1131 SAMTools SNP 20090 20090 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1131 SAMTools SNP 20127 20127 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C162:28 scaffold1131 SAMTools SNP 38912 38912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1131 SAMTools SNP 39250 39250 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C5%3BMQ%3D40%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C217:99 scaffold1131 SAMTools SNP 39271 39271 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C7%2C0%3BMQ%3D44%3BFQ%3D74%3BPV4%3D0.081%2C0.3%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1131 SAMTools SNP 48257 48257 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C20%2C0%3BMQ%3D45%3BFQ%3D172%3BPV4%3D0.15%2C1%2C0.069%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1131 SAMTools SNP 48943 48943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1131 SAMTools SNP 49281 49281 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C17%3BMQ%3D48%3BFQ%3D182%3BPV4%3D1%2C1%2C0.0094%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C250:99 scaffold1131 SAMTools SNP 49344 49344 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C11%2C76%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1131 SAMTools SNP 49669 49669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C63%2C50%2C64%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.44%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1131 SAMTools SNP 51314 51314 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1131 SAMTools SNP 51326 51326 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.25%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold1131 SAMTools SNP 53564 53564 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1131 SAMTools SNP 53782 53782 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C169:99 scaffold1131 SAMTools SNP 58267 58267 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1131 SAMTools SNP 61894 61894 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C209:72 scaffold1131 SAMTools SNP 61925 61925 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.058%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C128:46 scaffold1131 SAMTools SNP 61955 61955 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C98:75 scaffold1131 SAMTools SNP 61960 61960 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1131 SAMTools SNP 64129 64129 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1131 SAMTools SNP 64168 64168 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1131 SAMTools SNP 64186 64186 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1131 SAMTools SNP 64891 64891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1131 SAMTools SNP 67185 67185 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1131 SAMTools SNP 67218 67218 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1131 SAMTools SNP 76015 76015 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1131 SAMTools SNP 95590 95590 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1131 SAMTools SNP 159675 159675 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1131 SAMTools SNP 184506 184506 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1131 SAMTools SNP 185197 185197 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1131 SAMTools SNP 185488 185488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1131 SAMTools SNP 189842 189842 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1.7e-20%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1131 SAMTools SNP 190144 190144 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C30%2C0:57 scaffold1131 SAMTools SNP 192280 192280 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.084%2C0.5%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1131 SAMTools SNP 193608 193608 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1131 SAMTools SNP 195545 195545 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.35%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1131 SAMTools SNP 195808 195808 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.56%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1131 SAMTools SNP 203047 203047 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1131 SAMTools SNP 203778 203778 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1131 SAMTools SNP 204108 204108 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1131 SAMTools SNP 206235 206235 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1131 SAMTools SNP 206283 206283 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1131 SAMTools SNP 207250 207250 34.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1131 SAMTools SNP 227602 227602 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C3%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C5.4e-07%2C0.34%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C57:60 scaffold1131 SAMTools SNP 253553 253553 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1131 SAMTools SNP 253556 253556 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1131 SAMTools SNP 254102 254102 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1131 SAMTools SNP 254823 254823 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold1131 SAMTools SNP 254851 254851 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1131 SAMTools SNP 255133 255133 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1131 SAMTools SNP 303705 303705 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 763 763 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 1010 1010 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 3453 3453 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C3%2C83%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.059%2C2.8e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1132 SAMTools SNP 3492 3492 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C192%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.02%2C5.1e-23%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold1132 SAMTools SNP 3558 3558 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold1132 SAMTools SNP 33334 33334 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 33353 33353 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 34491 34491 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 62112 62112 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1132 SAMTools SNP 84682 84682 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1132 SAMTools SNP 105571 105571 46.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1132 SAMTools SNP 106415 106415 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C56%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C172%2C0:99 scaffold1132 SAMTools SNP 115473 115473 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 116394 116394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 116744 116744 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 149147 149147 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1132 SAMTools SNP 153312 153312 49.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1132 SAMTools SNP 153428 153428 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 153431 153431 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 221633 221633 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1132 SAMTools SNP 221834 221834 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1132 SAMTools SNP 260004 260004 37.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1132 SAMTools SNP 334945 334945 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1132 SAMTools SNP 335126 335126 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1132 SAMTools SNP 336335 336335 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1132 SAMTools SNP 360864 360864 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 361019 361019 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 361914 361914 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1132 SAMTools SNP 364737 364737 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1132 SAMTools SNP 373327 373327 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 386757 386757 9.49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1132 SAMTools SNP 405795 405795 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1132 SAMTools SNP 431743 431743 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C73:76 scaffold1132 SAMTools SNP 432014 432014 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C0.069%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C121:99 scaffold1132 SAMTools SNP 432040 432040 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1132 SAMTools SNP 433105 433105 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C23%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C194:83 scaffold1132 SAMTools SNP 436623 436623 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1132 SAMTools SNP 438386 438386 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 439369 439369 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1132 SAMTools SNP 439370 439370 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1132 SAMTools SNP 439428 439428 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C24%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C202:99 scaffold1132 SAMTools SNP 448589 448589 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1132 SAMTools SNP 448627 448627 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C174:74 scaffold1132 SAMTools SNP 450048 450048 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1132 SAMTools SNP 450079 450079 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1132 SAMTools SNP 451022 451022 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 451278 451278 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 452260 452260 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1132 SAMTools SNP 452278 452278 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1132 SAMTools SNP 453262 453262 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1132 SAMTools SNP 453576 453576 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1132 SAMTools SNP 453816 453816 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1132 SAMTools SNP 454270 454270 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1132 SAMTools SNP 454297 454297 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1132 SAMTools SNP 454627 454627 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1132 SAMTools SNP 454666 454666 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1132 SAMTools SNP 454994 454994 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 455012 455012 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 455291 455291 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 455848 455848 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 456124 456124 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1132 SAMTools SNP 456154 456154 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 456166 456166 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 456202 456202 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1132 SAMTools SNP 456722 456722 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.31%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1132 SAMTools SNP 456929 456929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1132 SAMTools SNP 456968 456968 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1132 SAMTools SNP 457028 457028 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C30%2C0:57 scaffold1132 SAMTools SNP 457043 457043 118 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C104%2C167%2C0%2C158:27 scaffold1132 SAMTools SNP 459509 459509 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 459771 459771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 464018 464018 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 464033 464033 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 466687 466687 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold1132 SAMTools SNP 467337 467337 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold1132 SAMTools SNP 468138 468138 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1132 SAMTools SNP 468478 468478 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.02%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C186:33 scaffold1132 SAMTools SNP 468549 468549 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold1132 SAMTools SNP 471064 471064 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1132 SAMTools SNP 476573 476573 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1132 SAMTools SNP 481786 481786 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C81%2C0:99 scaffold1132 SAMTools SNP 481888 481888 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1132 SAMTools SNP 486746 486746 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 486779 486779 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1132 SAMTools SNP 486791 486791 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1132 SAMTools SNP 487155 487155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1132 SAMTools SNP 487669 487669 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1132 SAMTools SNP 488206 488206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 488218 488218 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.098%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 488265 488265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 489262 489262 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1132 SAMTools SNP 489337 489337 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 489373 489373 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1132 SAMTools SNP 490222 490222 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C195:99 scaffold1132 SAMTools SNP 490300 490300 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1132 SAMTools SNP 490847 490847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1132 SAMTools SNP 490925 490925 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.34%2C0.48%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1132 SAMTools SNP 490928 490928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C22%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1132 SAMTools SNP 492272 492272 84.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1132 SAMTools SNP 492311 492311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1132 SAMTools SNP 492320 492320 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D46%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C222:99 scaffold1132 SAMTools SNP 493712 493712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C10%3BMQ%3D48%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1132 SAMTools SNP 498837 498837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C12%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1132 SAMTools SNP 498894 498894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 499392 499392 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C3.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C238:68 scaffold1132 SAMTools SNP 505039 505039 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1132 SAMTools SNP 520513 520513 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1132 SAMTools SNP 520576 520576 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1132 SAMTools SNP 520711 520711 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1132 SAMTools SNP 530041 530041 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 530081 530081 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 551098 551098 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1132 SAMTools SNP 551725 551725 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 551959 551959 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 554118 554118 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1132 SAMTools SNP 554126 554126 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1132 SAMTools SNP 554207 554207 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 555227 555227 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 562834 562834 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1132 SAMTools SNP 562979 562979 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1132 SAMTools SNP 562982 562982 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 582074 582074 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C186:99 scaffold1132 SAMTools SNP 583528 583528 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 583591 583591 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0013%2C0.12%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1132 SAMTools SNP 584122 584122 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1132 SAMTools SNP 584128 584128 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C132:99 scaffold1132 SAMTools SNP 584189 584189 63.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold1132 SAMTools SNP 584246 584246 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold1132 SAMTools SNP 584954 584954 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1132 SAMTools SNP 585024 585024 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1132 SAMTools SNP 585136 585136 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1132 SAMTools SNP 585149 585149 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1132 SAMTools SNP 586711 586711 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C141%2C0:99 scaffold1132 SAMTools SNP 587384 587384 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C51%2C0:99 scaffold1132 SAMTools SNP 588617 588617 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.29%2C3.2e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C226:66 scaffold1132 SAMTools SNP 588779 588779 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C0%2C29%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0022%2C3.1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1132 SAMTools SNP 588818 588818 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1132 SAMTools SNP 588932 588932 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 588968 588968 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1132 SAMTools SNP 589321 589321 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1132 SAMTools SNP 595003 595003 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1132 SAMTools SNP 595546 595546 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1132 SAMTools SNP 595672 595672 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1132 SAMTools SNP 597281 597281 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.057%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C160:99 scaffold1132 SAMTools SNP 597455 597455 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C126%2C0:99 scaffold1132 SAMTools SNP 597552 597552 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C255%2C0:99 scaffold1132 SAMTools SNP 597818 597818 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.4e-19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1132 SAMTools SNP 597866 597866 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.28%2C2.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C229:49 scaffold1132 SAMTools SNP 598379 598379 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1132 SAMTools SNP 598460 598460 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C126%2C0:99 scaffold1132 SAMTools SNP 598895 598895 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C103%2C48%2C98%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.45%2C4.7e-180%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1132 SAMTools SNP 599932 599932 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1132 SAMTools SNP 600260 600260 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 600951 600951 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1132 SAMTools SNP 601148 601148 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1132 SAMTools SNP 601265 601265 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1132 SAMTools SNP 602800 602800 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 602881 602881 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 602887 602887 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 605179 605179 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1132 SAMTools SNP 605709 605709 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.046%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1132 SAMTools SNP 608446 608446 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1132 SAMTools SNP 613487 613487 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 613496 613496 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 613913 613913 9.97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1132 SAMTools SNP 617313 617313 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1132 SAMTools SNP 617346 617346 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1132 SAMTools SNP 617358 617358 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1132 SAMTools SNP 617388 617388 55.8 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1132 SAMTools SNP 636715 636715 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 636730 636730 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 643393 643393 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1132 SAMTools SNP 643434 643434 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1132 SAMTools SNP 664053 664053 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1132 SAMTools SNP 664342 664342 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C102:99 scaffold1132 SAMTools SNP 664407 664407 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1132 SAMTools SNP 679354 679354 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C39%2C0:75 scaffold1132 SAMTools SNP 679390 679390 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C7.7e-21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C127:43 scaffold1132 SAMTools SNP 680117 680117 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 681343 681343 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C6%2C10%2C1%3BMQ%3D48%3BFQ%3D81%3BPV4%3D1%2C0.0046%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1132 SAMTools SNP 683539 683539 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C89%2C3%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.0013%2C0.38%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C7%2C0:12 scaffold1132 SAMTools SNP 684313 684313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1132 SAMTools SNP 684534 684534 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C16%2C0:29 scaffold1132 SAMTools SNP 684562 684562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 685342 685342 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C0%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C220%2C0:99 scaffold1132 SAMTools SNP 685369 685369 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C100:72 scaffold1132 SAMTools SNP 685419 685419 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.3e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C224:37 scaffold1132 SAMTools SNP 685674 685674 6.97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C57%2C0:50 scaffold1132 SAMTools SNP 686054 686054 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C43%3BMQ%3D3%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C151%2C0:99 scaffold1132 SAMTools SNP 687027 687027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1132 SAMTools SNP 689899 689899 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1132 SAMTools SNP 690310 690310 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1132 SAMTools SNP 690467 690467 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 690846 690846 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1132 SAMTools SNP 691522 691522 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 691560 691560 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 691750 691750 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1132 SAMTools SNP 691751 691751 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1132 SAMTools SNP 691893 691893 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold1132 SAMTools SNP 691974 691974 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C10%3BMQ%3D39%3BFQ%3D5.47%3BPV4%3D2.3e-05%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C31:34 scaffold1132 SAMTools SNP 692165 692165 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C11%3BMQ%3D38%3BFQ%3D139%3BPV4%3D3.5e-07%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold1132 SAMTools SNP 692619 692619 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D30%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C57%2C0:99 scaffold1132 SAMTools SNP 692749 692749 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 692751 692751 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 693198 693198 43.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D27%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C2%2C0:5 scaffold1132 SAMTools SNP 693242 693242 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D36%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C57%2C0:99 scaffold1132 SAMTools SNP 696932 696932 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1132 SAMTools SNP 696962 696962 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C79:78 scaffold1132 SAMTools SNP 724770 724770 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1132 SAMTools SNP 724807 724807 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.049%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1132 SAMTools SNP 755543 755543 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1132 SAMTools SNP 793674 793674 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C204:99 scaffold1132 SAMTools SNP 794036 794036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.024%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 794438 794438 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold1132 SAMTools SNP 795751 795751 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0063%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1132 SAMTools SNP 796530 796530 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1132 SAMTools SNP 797517 797517 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C15%2C0:27 scaffold1132 SAMTools SNP 800154 800154 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1132 SAMTools SNP 800179 800179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1132 SAMTools SNP 801878 801878 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C20%2C63%2C15%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.57%2C1.6e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1132 SAMTools SNP 801890 801890 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1132 SAMTools SNP 801968 801968 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C78%2C0%2C32%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D9.9e-06%2C2.3e-10%2C1%2C6.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1132 SAMTools SNP 802952 802952 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C98%2C0%2C50%3BMQ%3D50%3BFQ%3D110%3BPV4%3D3.9e-06%2C5.5e-08%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1132 SAMTools SNP 803622 803622 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C51%2C1%2C17%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.67%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1132 SAMTools SNP 805019 805019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C67%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1132 SAMTools SNP 805569 805569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C13%2C22%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 807042 807042 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C212%2C44%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 807075 807075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C210%2C37%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-08%2C1%2C1%2C4.3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 808013 808013 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1132 SAMTools SNP 808072 808072 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C55%2C2%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1132 SAMTools SNP 808143 808143 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C24%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C3.5e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1132 SAMTools SNP 808172 808172 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C180:71 scaffold1132 SAMTools SNP 810191 810191 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1132 SAMTools SNP 812174 812174 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C22%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.042%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 812267 812267 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C0%2C20%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.9e-05%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1132 SAMTools SNP 812744 812744 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C25%2C1%2C20%3BMQ%3D50%3BFQ%3D175%3BPV4%3D4.9e-05%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1132 SAMTools SNP 812822 812822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1132 SAMTools SNP 812997 812997 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C30%2C3%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1132 SAMTools SNP 813207 813207 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C8%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1132 SAMTools SNP 813447 813447 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold1132 SAMTools SNP 813513 813513 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1132 SAMTools SNP 814109 814109 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C32%2C37%2C28%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1.6e-51%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1132 SAMTools SNP 814866 814866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C322%2C0%2C287%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 815284 815284 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1132 SAMTools SNP 815350 815350 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1132 SAMTools SNP 815356 815356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1132 SAMTools SNP 815386 815386 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1132 SAMTools SNP 818217 818217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 818538 818538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1132 SAMTools SNP 818568 818568 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.0065%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 818607 818607 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1132 SAMTools SNP 819790 819790 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1132 SAMTools SNP 819805 819805 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1132 SAMTools SNP 819829 819829 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 819850 819850 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1132 SAMTools SNP 819853 819853 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1132 SAMTools SNP 820050 820050 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1132 SAMTools SNP 820146 820146 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.44%2C0.037%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C166:82 scaffold1132 SAMTools SNP 820156 820156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1132 SAMTools SNP 820474 820474 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C17%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D9.5e-06%2C1%2C1%2C1.7e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1132 SAMTools SNP 820489 820489 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C75%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D2e-10%2C1%2C1%2C2.7e-37;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C205:99 scaffold1132 SAMTools SNP 820784 820784 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1132 SAMTools SNP 821221 821221 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1132 SAMTools SNP 821226 821226 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C39%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0003%2C0.089%2C1%2C6.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1132 SAMTools SNP 821260 821260 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C16%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C3.1e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C222:74 scaffold1132 SAMTools SNP 821281 821281 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C51%2C0:99 scaffold1132 SAMTools SNP 821338 821338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1132 SAMTools SNP 831062 831062 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1134 SAMTools SNP 10940 10940 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1134 SAMTools SNP 10967 10967 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1134 SAMTools SNP 11021 11021 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1134 SAMTools SNP 11264 11264 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1134 SAMTools SNP 15687 15687 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1134 SAMTools SNP 25326 25326 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1134 SAMTools SNP 41943 41943 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1134 SAMTools SNP 42507 42507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1134 SAMTools SNP 42578 42578 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1134 SAMTools SNP 42642 42642 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1134 SAMTools SNP 42643 42643 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1134 SAMTools SNP 42916 42916 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1134 SAMTools SNP 43406 43406 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C69%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1134 SAMTools SNP 49961 49961 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C88:55 scaffold1134 SAMTools SNP 62508 62508 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C198:66 scaffold1134 SAMTools SNP 65775 65775 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1134 SAMTools SNP 66469 66469 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0049%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1134 SAMTools SNP 66474 66474 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.044%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1134 SAMTools SNP 66558 66558 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1134 SAMTools SNP 66859 66859 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C193:62 scaffold1134 SAMTools SNP 68391 68391 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1134 SAMTools SNP 91992 91992 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1134 SAMTools SNP 94983 94983 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1134 SAMTools SNP 95628 95628 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0.16%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1138 SAMTools SNP 6901 6901 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1138 SAMTools SNP 12395 12395 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1138 SAMTools SNP 37173 37173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1138 SAMTools SNP 37203 37203 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold1138 SAMTools SNP 37270 37270 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold1138 SAMTools SNP 37553 37553 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1138 SAMTools SNP 37579 37579 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1138 SAMTools SNP 37918 37918 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1138 SAMTools SNP 37921 37921 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1138 SAMTools SNP 41319 41319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 41505 41505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 41555 41555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 43045 43045 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1138 SAMTools SNP 43065 43065 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 43461 43461 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.38%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1138 SAMTools SNP 86962 86962 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1138 SAMTools SNP 88764 88764 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1138 SAMTools SNP 99080 99080 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 99248 99248 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1138 SAMTools SNP 99250 99250 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1138 SAMTools SNP 99270 99270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 99317 99317 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 99621 99621 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1138 SAMTools SNP 99875 99875 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D31%3BFQ%3D9.53%3BPV4%3D0.46%2C0.12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C36:39 scaffold1138 SAMTools SNP 102427 102427 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 102454 102454 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 102699 102699 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 104460 104460 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.22%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C88:55 scaffold1138 SAMTools SNP 108458 108458 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1138 SAMTools SNP 108502 108502 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1138 SAMTools SNP 108519 108519 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1138 SAMTools SNP 109284 109284 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1138 SAMTools SNP 109310 109310 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.00016%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold1138 SAMTools SNP 109731 109731 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1138 SAMTools SNP 109790 109790 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.053%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1138 SAMTools SNP 109953 109953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C9%2C9%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0098%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold1138 SAMTools SNP 109979 109979 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1138 SAMTools SNP 110260 110260 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1138 SAMTools SNP 110347 110347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1138 SAMTools SNP 110933 110933 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1138 SAMTools SNP 111075 111075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold1138 SAMTools SNP 111557 111557 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C36%2C0:69 scaffold1138 SAMTools SNP 111593 111593 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 111901 111901 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C38:41 scaffold1138 SAMTools SNP 113572 113572 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1138 SAMTools SNP 113639 113639 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 113784 113784 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1138 SAMTools SNP 114709 114709 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1138 SAMTools SNP 114726 114726 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1138 SAMTools SNP 116243 116243 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1138 SAMTools SNP 116259 116259 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1138 SAMTools SNP 119844 119844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1138 SAMTools SNP 119886 119886 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1138 SAMTools SNP 120359 120359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1138 SAMTools SNP 121684 121684 42.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C6.4e-19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C13%2C0:23 scaffold1138 SAMTools SNP 125264 125264 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1138 SAMTools SNP 125297 125297 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1138 SAMTools SNP 125625 125625 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1138 SAMTools SNP 125676 125676 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00052%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1138 SAMTools SNP 126021 126021 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.079%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C178:99 scaffold1138 SAMTools SNP 126081 126081 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1138 SAMTools SNP 126093 126093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1138 SAMTools SNP 126663 126663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1138 SAMTools SNP 129605 129605 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.069%2C9.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1138 SAMTools SNP 130145 130145 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1138 SAMTools SNP 130181 130181 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1138 SAMTools SNP 131361 131361 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 131366 131366 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 131549 131549 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 132708 132708 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C107:52 scaffold1138 SAMTools SNP 132737 132737 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1138 SAMTools SNP 133103 133103 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.47%2C1.8e-15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C254:39 scaffold1138 SAMTools SNP 133658 133658 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C149:40 scaffold1138 SAMTools SNP 133751 133751 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1138 SAMTools SNP 133781 133781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.44%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1138 SAMTools SNP 133820 133820 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1138 SAMTools SNP 134216 134216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1138 SAMTools SNP 134483 134483 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.44%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C247:99 scaffold1138 SAMTools SNP 134485 134485 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.25%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1138 SAMTools SNP 135374 135374 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1138 SAMTools SNP 135395 135395 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1138 SAMTools SNP 135724 135724 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C19%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.046%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1138 SAMTools SNP 135769 135769 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.02%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C188:42 scaffold1138 SAMTools SNP 135773 135773 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C137:30 scaffold1138 SAMTools SNP 135797 135797 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.067%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C124:48 scaffold1138 SAMTools SNP 136454 136454 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C0.086%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1138 SAMTools SNP 136505 136505 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C220:91 scaffold1138 SAMTools SNP 136592 136592 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1138 SAMTools SNP 136643 136643 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold1138 SAMTools SNP 137978 137978 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C27%2C0:51 scaffold1138 SAMTools SNP 138068 138068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1138 SAMTools SNP 140337 140337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1138 SAMTools SNP 140743 140743 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1138 SAMTools SNP 141684 141684 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold1138 SAMTools SNP 142327 142327 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1138 SAMTools SNP 142621 142621 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 142636 142636 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 142638 142638 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1138 SAMTools SNP 144038 144038 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1138 SAMTools SNP 144396 144396 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C14%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.54%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C68:71 scaffold1138 SAMTools SNP 144402 144402 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1138 SAMTools SNP 144662 144662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1138 SAMTools SNP 144689 144689 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.022%2C0.0075%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1138 SAMTools SNP 144830 144830 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.1e-19%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1138 SAMTools SNP 145010 145010 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C108%2C0:99 scaffold1138 SAMTools SNP 145694 145694 94.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0:39 scaffold1138 SAMTools SNP 145946 145946 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1138 SAMTools SNP 146519 146519 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1138 SAMTools SNP 147176 147176 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.082%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1138 SAMTools SNP 147482 147482 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C0.18%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1138 SAMTools SNP 147539 147539 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1138 SAMTools SNP 147839 147839 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1138 SAMTools SNP 147946 147946 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1138 SAMTools SNP 148016 148016 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1138 SAMTools SNP 148040 148040 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C150:99 scaffold1138 SAMTools SNP 148525 148525 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1138 SAMTools SNP 148627 148627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1138 SAMTools SNP 149167 149167 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1138 SAMTools SNP 149200 149200 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1138 SAMTools SNP 150888 150888 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1138 SAMTools SNP 150902 150902 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1138 SAMTools SNP 151022 151022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1138 SAMTools SNP 151625 151625 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1138 SAMTools SNP 151666 151666 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1138 SAMTools SNP 151729 151729 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C230:66 scaffold1138 SAMTools SNP 151732 151732 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1138 SAMTools SNP 151747 151747 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1138 SAMTools SNP 154009 154009 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1138 SAMTools SNP 155585 155585 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0261%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.53%2C0.0013%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1138 SAMTools SNP 156218 156218 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1138 SAMTools SNP 156272 156272 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1138 SAMTools SNP 156464 156464 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1138 SAMTools SNP 157006 157006 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C30%2C0:57 scaffold1138 SAMTools SNP 157518 157518 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C32%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.41%2C0.2%2C0.25%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1138 SAMTools SNP 165396 165396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1138 SAMTools SNP 181736 181736 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1138 SAMTools SNP 189168 189168 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1138 SAMTools SNP 190055 190055 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1138 SAMTools SNP 190436 190436 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1138 SAMTools SNP 190565 190565 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 190613 190613 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 190696 190696 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1138 SAMTools SNP 190816 190816 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 190956 190956 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 191312 191312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 192054 192054 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 192071 192071 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 197226 197226 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D12%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C48%2C0:60 scaffold1138 SAMTools SNP 214880 214880 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1138 SAMTools SNP 242516 242516 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1138 SAMTools SNP 242583 242583 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold1138 SAMTools SNP 242594 242594 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1138 SAMTools SNP 242630 242630 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 243026 243026 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 256966 256966 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1138 SAMTools SNP 275153 275153 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1138 SAMTools SNP 277281 277281 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 277744 277744 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 279255 279255 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1138 SAMTools SNP 279356 279356 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 279384 279384 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 296039 296039 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.5e-50%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C248:36 scaffold1138 SAMTools SNP 301709 301709 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1138 SAMTools SNP 309193 309193 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1138 SAMTools SNP 309555 309555 19.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1138 SAMTools SNP 336215 336215 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1138 SAMTools SNP 338402 338402 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 338417 338417 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 338460 338460 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 338462 338462 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1138 SAMTools SNP 370159 370159 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1138 SAMTools SNP 370574 370574 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1142 SAMTools SNP 5782 5782 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.39%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1142 SAMTools SNP 34394 34394 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C24%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.029%2C1.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1142 SAMTools SNP 34654 34654 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C3%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.12%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1142 SAMTools SNP 34657 34657 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1142 SAMTools SNP 34796 34796 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 34804 34804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 35012 35012 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0078%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1142 SAMTools SNP 51708 51708 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1142 SAMTools SNP 51909 51909 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1142 SAMTools SNP 52245 52245 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1142 SAMTools SNP 53747 53747 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1142 SAMTools SNP 54110 54110 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1142 SAMTools SNP 54373 54373 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1142 SAMTools SNP 56010 56010 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1142 SAMTools SNP 61006 61006 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.023%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1142 SAMTools SNP 61099 61099 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1142 SAMTools SNP 62107 62107 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1142 SAMTools SNP 62173 62173 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C69%2C0:99 scaffold1142 SAMTools SNP 62211 62211 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.1%2C0.0029%2C1%2C7.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C231:42 scaffold1142 SAMTools SNP 64140 64140 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1142 SAMTools SNP 64167 64167 17.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold1142 SAMTools SNP 64199 64199 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold1142 SAMTools SNP 64757 64757 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.9e-15%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C219:31 scaffold1142 SAMTools SNP 65843 65843 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.057%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1142 SAMTools SNP 66000 66000 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.62%2C0.16%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C242:99 scaffold1142 SAMTools SNP 66435 66435 222 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0%2C246%2C24%2C243:99 scaffold1142 SAMTools SNP 66441 66441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1142 SAMTools SNP 66718 66718 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C32%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 66796 66796 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C4%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.31%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1142 SAMTools SNP 67060 67060 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 67263 67263 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.31%2C0.23%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C252:99 scaffold1142 SAMTools SNP 67281 67281 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 67675 67675 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1142 SAMTools SNP 67789 67789 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold1142 SAMTools SNP 67795 67795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1142 SAMTools SNP 67942 67942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1142 SAMTools SNP 68186 68186 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1142 SAMTools SNP 68256 68256 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1142 SAMTools SNP 68674 68674 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 68677 68677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C6%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1142 SAMTools SNP 69268 69268 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C175:99 scaffold1142 SAMTools SNP 69278 69278 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1142 SAMTools SNP 69487 69487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1142 SAMTools SNP 69858 69858 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 69888 69888 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.11%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 69904 69904 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 70369 70369 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1142 SAMTools SNP 70654 70654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 70720 70720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1142 SAMTools SNP 71046 71046 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 71346 71346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1142 SAMTools SNP 71379 71379 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1142 SAMTools SNP 71953 71953 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1142 SAMTools SNP 71995 71995 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1142 SAMTools SNP 76157 76157 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.076%2C9.6e-06%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1142 SAMTools SNP 76191 76191 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C0%2C22%3BMQ%3D50%3BFQ%3D178%3BPV4%3D4.4e-06%2C1.3e-05%2C1%2C5.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1142 SAMTools SNP 87065 87065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1142 SAMTools SNP 88319 88319 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1142 SAMTools SNP 88673 88673 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1142 SAMTools SNP 89315 89315 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1142 SAMTools SNP 92428 92428 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.2%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold1142 SAMTools SNP 92723 92723 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C153:60 scaffold1142 SAMTools SNP 92896 92896 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C7.6e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1142 SAMTools SNP 96190 96190 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D128%3BPV4%3D2.7e-05%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1142 SAMTools SNP 97208 97208 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C0%2C16%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.093%2C0.0018%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1142 SAMTools SNP 97243 97243 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 98280 98280 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1142 SAMTools SNP 98354 98354 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1142 SAMTools SNP 99563 99563 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C28%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.18%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1142 SAMTools SNP 99608 99608 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C0%2C26%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.00099%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1142 SAMTools SNP 99618 99618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C50%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1142 SAMTools SNP 99906 99906 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.55%2C0.046%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1142 SAMTools SNP 99916 99916 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1142 SAMTools SNP 101254 101254 46.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1142 SAMTools SNP 107974 107974 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C28%2C31%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00044%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 108762 108762 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C147%2C60%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-15%2C0.13%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 109065 109065 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C32%2C22%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-12%2C1%2C1%2C2.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 109144 109144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C60%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 109385 109385 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 109400 109400 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1142 SAMTools SNP 109481 109481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1142 SAMTools SNP 110007 110007 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C249:99 scaffold1142 SAMTools SNP 110292 110292 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 111185 111185 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1142 SAMTools SNP 111759 111759 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1142 SAMTools SNP 111804 111804 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1142 SAMTools SNP 112430 112430 62.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold1142 SAMTools SNP 112569 112569 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1142 SAMTools SNP 112615 112615 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1142 SAMTools SNP 184916 184916 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C134:40 scaffold1142 SAMTools SNP 204548 204548 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1142 SAMTools SNP 204558 204558 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1142 SAMTools SNP 210601 210601 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1142 SAMTools SNP 210791 210791 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1142 SAMTools SNP 210860 210860 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1142 SAMTools SNP 210905 210905 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1143 SAMTools SNP 32347 32347 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1143 SAMTools SNP 47582 47582 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1143 SAMTools SNP 47612 47612 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1143 SAMTools SNP 81063 81063 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1143 SAMTools SNP 82502 82502 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1143 SAMTools SNP 97837 97837 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1143 SAMTools SNP 97859 97859 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1143 SAMTools SNP 113240 113240 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1143 SAMTools SNP 113257 113257 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1143 SAMTools SNP 113410 113410 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1143 SAMTools SNP 116725 116725 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C227:50 scaffold1143 SAMTools SNP 127130 127130 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1143 SAMTools SNP 127254 127254 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1143 SAMTools SNP 127275 127275 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1143 SAMTools SNP 128474 128474 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D26.8%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C67:57 scaffold1143 SAMTools SNP 195459 195459 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.048%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1143 SAMTools SNP 195720 195720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1143 SAMTools SNP 196077 196077 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C230:99 scaffold1143 SAMTools SNP 196387 196387 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1143 SAMTools SNP 196423 196423 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1143 SAMTools SNP 196461 196461 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1143 SAMTools SNP 196465 196465 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1143 SAMTools SNP 197007 197007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C35%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1143 SAMTools SNP 198899 198899 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1143 SAMTools SNP 198932 198932 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1143 SAMTools SNP 199007 199007 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1143 SAMTools SNP 199178 199178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1143 SAMTools SNP 200276 200276 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1143 SAMTools SNP 200314 200314 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.24%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C234:99 scaffold1143 SAMTools SNP 200368 200368 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1143 SAMTools SNP 200635 200635 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C2%3BMQ%3D48%3BFQ%3D215%3BPV4%3D0.61%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C243:99 scaffold1143 SAMTools SNP 201276 201276 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C33%2C0:63 scaffold1143 SAMTools SNP 201426 201426 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1143 SAMTools SNP 202681 202681 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.033%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C137:99 scaffold1143 SAMTools SNP 205864 205864 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1143 SAMTools SNP 210521 210521 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1143 SAMTools SNP 211020 211020 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1143 SAMTools SNP 211077 211077 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1143 SAMTools SNP 211293 211293 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1143 SAMTools SNP 219366 219366 42.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1143 SAMTools SNP 219548 219548 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.18%3BPV4%3D1%2C0.0037%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C32:35 scaffold1143 SAMTools SNP 219596 219596 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C0.0015%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C35:38 scaffold1143 SAMTools SNP 220098 220098 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold1144 SAMTools SNP 21627 21627 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C60%2C0:99 scaffold1144 SAMTools SNP 21672 21672 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.32%2C3.7e-14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C246:99 scaffold1144 SAMTools SNP 24873 24873 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.43%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C145:34 scaffold1144 SAMTools SNP 24954 24954 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C183:82 scaffold1144 SAMTools SNP 26188 26188 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.055%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1144 SAMTools SNP 28313 28313 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C29%2C17%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.14%2C2.8e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1144 SAMTools SNP 28360 28360 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C45%2C0%2C24%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.028%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1144 SAMTools SNP 29501 29501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C31%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1144 SAMTools SNP 30168 30168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 30955 30955 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1144 SAMTools SNP 31161 31161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1144 SAMTools SNP 31209 31209 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.3%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1144 SAMTools SNP 32394 32394 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1144 SAMTools SNP 32442 32442 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1144 SAMTools SNP 32803 32803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 33034 33034 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C7%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1144 SAMTools SNP 33040 33040 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.33%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1144 SAMTools SNP 33046 33046 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1144 SAMTools SNP 33082 33082 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1144 SAMTools SNP 36767 36767 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.34%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1144 SAMTools SNP 36782 36782 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 37750 37750 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C11%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.037%2C4.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1144 SAMTools SNP 37843 37843 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C6%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1144 SAMTools SNP 37855 37855 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 38416 38416 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C236:99 scaffold1144 SAMTools SNP 38724 38724 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1144 SAMTools SNP 39393 39393 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1144 SAMTools SNP 51312 51312 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1144 SAMTools SNP 51358 51358 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1144 SAMTools SNP 51936 51936 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1144 SAMTools SNP 51962 51962 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1144 SAMTools SNP 55486 55486 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1144 SAMTools SNP 55509 55509 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1144 SAMTools SNP 55510 55510 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1144 SAMTools SNP 55707 55707 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1144 SAMTools SNP 55788 55788 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1144 SAMTools SNP 59965 59965 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.42%2C1.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1144 SAMTools SNP 60486 60486 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1144 SAMTools SNP 60501 60501 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1144 SAMTools SNP 64190 64190 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C3%2C32%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1144 SAMTools SNP 64556 64556 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.59%2C6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1144 SAMTools SNP 65523 65523 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1144 SAMTools SNP 66681 66681 46.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1144 SAMTools SNP 71272 71272 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1144 SAMTools SNP 71364 71364 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 71377 71377 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 71802 71802 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold1144 SAMTools SNP 71824 71824 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1144 SAMTools SNP 72133 72133 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1144 SAMTools SNP 72377 72377 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 73107 73107 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C22%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 73416 73416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C41%2C8%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C0.00012%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 73773 73773 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C81%2C0:99 scaffold1144 SAMTools SNP 74013 74013 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 74279 74279 40.3 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C83%2C68%2C82%2C0%2C67:27 scaffold1144 SAMTools SNP 74471 74471 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C49%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1144 SAMTools SNP 74474 74474 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C49%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1144 SAMTools SNP 76163 76163 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C21%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1144 SAMTools SNP 76178 76178 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C3%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.14%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1144 SAMTools SNP 76222 76222 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 76261 76261 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C34%2C15%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1144 SAMTools SNP 76297 76297 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C31%2C0%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C35%2C0:67 scaffold1144 SAMTools SNP 79381 79381 84.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold1144 SAMTools SNP 80585 80585 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold1144 SAMTools SNP 81202 81202 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C37%2C16%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.18%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 83122 83122 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C56%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1144 SAMTools SNP 83132 83132 79 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C54%2C0%2C108%2C37%2C105:99 scaffold1144 SAMTools SNP 83294 83294 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C4%2C56%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.4e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1144 SAMTools SNP 83324 83324 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold1144 SAMTools SNP 83954 83954 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C37%2C76%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 84341 84341 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C72%2C39%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 84368 84368 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C72%2C18%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C5.8e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 84524 84524 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1144 SAMTools SNP 84635 84635 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1144 SAMTools SNP 85556 85556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1144 SAMTools SNP 85625 85625 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C18%2C49%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D5.1e-05%2C5.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1144 SAMTools SNP 89705 89705 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 89751 89751 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1144 SAMTools SNP 89768 89768 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 90922 90922 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 92955 92955 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C42%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1144 SAMTools SNP 92985 92985 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1144 SAMTools SNP 93012 93012 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1144 SAMTools SNP 93424 93424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1144 SAMTools SNP 93439 93439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D46%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1144 SAMTools SNP 99993 99993 68.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold1144 SAMTools SNP 100018 100018 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C20%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.033%2C1.9e-15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C149:85 scaffold1144 SAMTools SNP 100145 100145 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1144 SAMTools SNP 100163 100163 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1144 SAMTools SNP 100641 100641 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.28%2C0.44%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C254:99 scaffold1144 SAMTools SNP 100656 100656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 102260 102260 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1144 SAMTools SNP 102812 102812 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1144 SAMTools SNP 104504 104504 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 104685 104685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1144 SAMTools SNP 104730 104730 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold1144 SAMTools SNP 104748 104748 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold1144 SAMTools SNP 105547 105547 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold1144 SAMTools SNP 105568 105568 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C244:99 scaffold1144 SAMTools SNP 105951 105951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 106321 106321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 106552 106552 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C29%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C235:99 scaffold1144 SAMTools SNP 106592 106592 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C217:88 scaffold1144 SAMTools SNP 106593 106593 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1144 SAMTools SNP 113946 113946 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C14%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D3.3e-07%2C4.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1144 SAMTools SNP 114879 114879 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1144 SAMTools SNP 114898 114898 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold1144 SAMTools SNP 115373 115373 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 115870 115870 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.031%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C189:88 scaffold1144 SAMTools SNP 116278 116278 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 117795 117795 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.21%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1144 SAMTools SNP 117872 117872 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1144 SAMTools SNP 118773 118773 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1144 SAMTools SNP 118862 118862 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1144 SAMTools SNP 119549 119549 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1144 SAMTools SNP 119594 119594 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1144 SAMTools SNP 120020 120020 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 120059 120059 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 120119 120119 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 120467 120467 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 120515 120515 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 121736 121736 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold1144 SAMTools SNP 122071 122071 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1144 SAMTools SNP 122139 122139 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 122215 122215 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 122497 122497 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1144 SAMTools SNP 122557 122557 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C205:64 scaffold1144 SAMTools SNP 122875 122875 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1144 SAMTools SNP 160377 160377 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0027%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C77:48 scaffold1144 SAMTools SNP 161522 161522 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1144 SAMTools SNP 194160 194160 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1144 SAMTools SNP 198447 198447 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 203648 203648 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0041%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1144 SAMTools SNP 212548 212548 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.00038%2C0.068%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C235:99 scaffold1144 SAMTools SNP 212596 212596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1144 SAMTools SNP 215613 215613 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C121:80 scaffold1144 SAMTools SNP 215634 215634 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold1144 SAMTools SNP 220479 220479 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C119:99 scaffold1144 SAMTools SNP 220700 220700 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C8.3e-42%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C243:67 scaffold1144 SAMTools SNP 221466 221466 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1144 SAMTools SNP 221519 221519 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1144 SAMTools SNP 221596 221596 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold1144 SAMTools SNP 222978 222978 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C132:99 scaffold1144 SAMTools SNP 222980 222980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1144 SAMTools SNP 287165 287165 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C27%2C0:23 scaffold1144 SAMTools SNP 289559 289559 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1144 SAMTools SNP 289571 289571 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C188:99 scaffold1144 SAMTools SNP 290808 290808 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.52%2C7e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C106:65 scaffold1144 SAMTools SNP 290877 290877 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1144 SAMTools SNP 290907 290907 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1144 SAMTools SNP 294642 294642 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 294654 294654 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1144 SAMTools SNP 296113 296113 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.00029%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 296430 296430 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 296436 296436 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 296448 296448 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.27%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 296580 296580 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C35:38 scaffold1144 SAMTools SNP 296613 296613 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.023%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1144 SAMTools SNP 296623 296623 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1144 SAMTools SNP 297226 297226 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C109%2C1%2C53%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.33%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1144 SAMTools SNP 297230 297230 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C0%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1144 SAMTools SNP 298635 298635 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1144 SAMTools SNP 299024 299024 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1144 SAMTools SNP 299311 299311 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C0.31%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1144 SAMTools SNP 300139 300139 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1144 SAMTools SNP 300273 300273 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1144 SAMTools SNP 300767 300767 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C29%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold1144 SAMTools SNP 301181 301181 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C4%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.23%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1144 SAMTools SNP 301226 301226 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 301262 301262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1144 SAMTools SNP 301948 301948 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C35%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1144 SAMTools SNP 302004 302004 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C31%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.5%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1144 SAMTools SNP 302315 302315 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C42%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.41%2C0.4%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1144 SAMTools SNP 303990 303990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1144 SAMTools SNP 304494 304494 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1144 SAMTools SNP 304497 304497 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1144 SAMTools SNP 304850 304850 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C14%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.5%2C0.48%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1144 SAMTools SNP 305113 305113 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 305128 305128 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 305354 305354 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1144 SAMTools SNP 305357 305357 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1144 SAMTools SNP 305739 305739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1144 SAMTools SNP 305790 305790 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1144 SAMTools SNP 306445 306445 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1144 SAMTools SNP 306486 306486 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 306898 306898 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 307417 307417 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1144 SAMTools SNP 327171 327171 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C112:31 scaffold1144 SAMTools SNP 327821 327821 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1144 SAMTools SNP 333650 333650 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 334067 334067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1144 SAMTools SNP 334083 334083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1144 SAMTools SNP 334167 334167 226 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.2%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1144 SAMTools SNP 334683 334683 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1144 SAMTools SNP 336650 336650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1144 SAMTools SNP 336860 336860 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1144 SAMTools SNP 336926 336926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C22%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00083%2C0.39%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1144 SAMTools SNP 337364 337364 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold1144 SAMTools SNP 337589 337589 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C33%2C0:63 scaffold1144 SAMTools SNP 338866 338866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold1144 SAMTools SNP 339512 339512 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1144 SAMTools SNP 360065 360065 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1144 SAMTools SNP 360139 360139 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1144 SAMTools SNP 361747 361747 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1144 SAMTools SNP 365776 365776 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1144 SAMTools SNP 365785 365785 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1144 SAMTools SNP 365863 365863 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1144 SAMTools SNP 365883 365883 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1144 SAMTools SNP 366154 366154 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1144 SAMTools SNP 366185 366185 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1144 SAMTools SNP 366188 366188 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1144 SAMTools SNP 366189 366189 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1144 SAMTools SNP 366284 366284 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1148 SAMTools SNP 36117 36117 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1148 SAMTools SNP 41458 41458 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1148 SAMTools SNP 55063 55063 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1148 SAMTools SNP 57354 57354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1148 SAMTools SNP 57365 57365 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C12%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1148 SAMTools SNP 58096 58096 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1148 SAMTools SNP 59705 59705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C75%2C9%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C0.35%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold1148 SAMTools SNP 59721 59721 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C19%2C15%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.016%2C8.5e-07%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1148 SAMTools SNP 60257 60257 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C0.27%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold1148 SAMTools SNP 60284 60284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1148 SAMTools SNP 60492 60492 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1148 SAMTools SNP 61119 61119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1148 SAMTools SNP 62644 62644 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C26%2C44%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 63266 63266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C7e-08%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 63571 63571 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C57%2C56%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 63616 63616 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C70%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 63645 63645 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1148 SAMTools SNP 63991 63991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1148 SAMTools SNP 66428 66428 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1148 SAMTools SNP 67349 67349 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1148 SAMTools SNP 68496 68496 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold1148 SAMTools SNP 68535 68535 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1148 SAMTools SNP 68538 68538 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.63%2C0.0034%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1148 SAMTools SNP 74382 74382 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C52%2C6%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 75685 75685 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 79963 79963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 79974 79974 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 80035 80035 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.08%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1148 SAMTools SNP 97061 97061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2116%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1771%2C279%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.00055%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1148 SAMTools SNP 97124 97124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2446%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C102%2C2128%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1148 SAMTools SNP 103151 103151 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1059%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D54%2C5%2C17%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.4e-25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1148 SAMTools SNP 153456 153456 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1148 SAMTools SNP 153643 153643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1148 SAMTools SNP 173755 173755 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1148 SAMTools SNP 173772 173772 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1148 SAMTools SNP 173883 173883 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1148 SAMTools SNP 174164 174164 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1148 SAMTools SNP 174172 174172 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1148 SAMTools SNP 174195 174195 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1148 SAMTools SNP 174493 174493 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1148 SAMTools SNP 176265 176265 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1148 SAMTools SNP 176480 176480 58.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1148 SAMTools SNP 177101 177101 9.08 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C21%2C9%2C36%2C0%2C33:16 scaffold1148 SAMTools SNP 179653 179653 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1149 SAMTools SNP 5070 5070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1149 SAMTools SNP 5115 5115 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1149 SAMTools SNP 5484 5484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1149 SAMTools SNP 5493 5493 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1149 SAMTools SNP 6592 6592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1149 SAMTools SNP 7259 7259 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1149 SAMTools SNP 7294 7294 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1149 SAMTools SNP 7314 7314 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 7381 7381 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 9009 9009 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1149 SAMTools SNP 9069 9069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 9543 9543 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1149 SAMTools SNP 9554 9554 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1149 SAMTools SNP 9566 9566 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1149 SAMTools SNP 9873 9873 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1149 SAMTools SNP 10213 10213 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 10855 10855 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1149 SAMTools SNP 11755 11755 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1149 SAMTools SNP 12464 12464 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 14155 14155 86.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold1149 SAMTools SNP 14161 14161 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1149 SAMTools SNP 15971 15971 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1149 SAMTools SNP 15972 15972 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 16010 16010 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 16076 16076 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 16085 16085 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1149 SAMTools SNP 16387 16387 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C236:97 scaffold1149 SAMTools SNP 16828 16828 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C5:8 scaffold1149 SAMTools SNP 16888 16888 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1149 SAMTools SNP 17179 17179 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 17263 17263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1149 SAMTools SNP 17722 17722 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1149 SAMTools SNP 17756 17756 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 17941 17941 39.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1149 SAMTools SNP 18070 18070 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.00016%2C2.6e-06%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C197:99 scaffold1149 SAMTools SNP 18888 18888 55.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold1149 SAMTools SNP 21916 21916 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1149 SAMTools SNP 22219 22219 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1149 SAMTools SNP 22263 22263 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1149 SAMTools SNP 22284 22284 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C216:99 scaffold1149 SAMTools SNP 22925 22925 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1149 SAMTools SNP 22940 22940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1149 SAMTools SNP 23395 23395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1149 SAMTools SNP 23632 23632 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C200:99 scaffold1149 SAMTools SNP 24817 24817 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1149 SAMTools SNP 29922 29922 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1149 SAMTools SNP 30060 30060 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1149 SAMTools SNP 30519 30519 25.3 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0%2C51%2C1%2C48:27 scaffold1149 SAMTools SNP 30625 30625 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C201%2C1%2C92%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1149 SAMTools SNP 30639 30639 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C200%2C1%2C92%3BMQ%3D50%3BFQ%3D134%3BPV4%3D4.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1149 SAMTools SNP 30759 30759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C51%2C23%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1149 SAMTools SNP 30781 30781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C26%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1149 SAMTools SNP 31175 31175 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C66%2C22%2C34%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0048%2C5e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1149 SAMTools SNP 31319 31319 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.016%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C254:37 scaffold1149 SAMTools SNP 32370 32370 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.018%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1149 SAMTools SNP 32391 32391 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1149 SAMTools SNP 49029 49029 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1149 SAMTools SNP 85682 85682 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1149 SAMTools SNP 93952 93952 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C3%2C0:6 scaffold1149 SAMTools SNP 152945 152945 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1149 SAMTools SNP 199178 199178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1149 SAMTools SNP 199254 199254 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1149 SAMTools SNP 200635 200635 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 201074 201074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.3e-24%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1149 SAMTools SNP 201671 201671 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C71%2C0%2C18%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.022%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1149 SAMTools SNP 201672 201672 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D23%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.017%2C0.21%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1149 SAMTools SNP 220933 220933 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1149 SAMTools SNP 221625 221625 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1149 SAMTools SNP 233512 233512 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1149 SAMTools SNP 234678 234678 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1149 SAMTools SNP 234844 234844 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1149 SAMTools SNP 235397 235397 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 235457 235457 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 236588 236588 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1149 SAMTools SNP 237062 237062 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1149 SAMTools SNP 237121 237121 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1149 SAMTools SNP 237703 237703 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1149 SAMTools SNP 237730 237730 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 238456 238456 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1149 SAMTools SNP 238500 238500 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1149 SAMTools SNP 239517 239517 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1149 SAMTools SNP 239538 239538 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1149 SAMTools SNP 239592 239592 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1149 SAMTools SNP 239601 239601 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1149 SAMTools SNP 239964 239964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 239979 239979 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 240783 240783 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C74:77 scaffold1149 SAMTools SNP 240815 240815 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1149 SAMTools SNP 241168 241168 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C60:63 scaffold1149 SAMTools SNP 241195 241195 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.26%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C26:29 scaffold1149 SAMTools SNP 241423 241423 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.027%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1149 SAMTools SNP 241710 241710 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1149 SAMTools SNP 241736 241736 11.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold1149 SAMTools SNP 243084 243084 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold1149 SAMTools SNP 243087 243087 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1149 SAMTools SNP 243117 243117 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1149 SAMTools SNP 244797 244797 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C250:99 scaffold1149 SAMTools SNP 244816 244816 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.51%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1149 SAMTools SNP 245229 245229 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1149 SAMTools SNP 245514 245514 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 261595 261595 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1149 SAMTools SNP 264714 264714 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold1149 SAMTools SNP 265774 265774 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 266476 266476 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 267124 267124 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1149 SAMTools SNP 267852 267852 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 271012 271012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1149 SAMTools SNP 271032 271032 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C107:99 scaffold1149 SAMTools SNP 271065 271065 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold1149 SAMTools SNP 271661 271661 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1149 SAMTools SNP 283070 283070 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 283247 283247 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 283800 283800 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 341463 341463 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D47%3BFQ%3D25.6%3BPV4%3D0.028%2C0.078%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C53:56 scaffold1149 SAMTools SNP 341477 341477 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1149 SAMTools SNP 351989 351989 25.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1149 SAMTools SNP 379588 379588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 379620 379620 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 380131 380131 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 393905 393905 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 410161 410161 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1149 SAMTools SNP 413312 413312 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1149 SAMTools SNP 413484 413484 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1149 SAMTools SNP 413543 413543 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 415617 415617 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C119:99 scaffold1149 SAMTools SNP 415624 415624 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1149 SAMTools SNP 415929 415929 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1149 SAMTools SNP 422206 422206 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 422243 422243 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 436413 436413 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1149 SAMTools SNP 498876 498876 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C0.0059%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C242:73 scaffold1149 SAMTools SNP 504231 504231 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 504361 504361 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 504859 504859 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1149 SAMTools SNP 505466 505466 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C163:99 scaffold1149 SAMTools SNP 505517 505517 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.048%2C3.2e-09%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C204:43 scaffold1149 SAMTools SNP 505857 505857 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1149 SAMTools SNP 505899 505899 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1149 SAMTools SNP 508117 508117 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1149 SAMTools SNP 509944 509944 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 510595 510595 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 510609 510609 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 514795 514795 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1149 SAMTools SNP 515223 515223 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.25%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C79:28 scaffold1149 SAMTools SNP 515402 515402 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 515406 515406 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 516795 516795 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 517417 517417 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 518959 518959 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 519965 519965 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 520313 520313 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1149 SAMTools SNP 520834 520834 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 521094 521094 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 522306 522306 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1149 SAMTools SNP 522333 522333 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1149 SAMTools SNP 522839 522839 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 526913 526913 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1149 SAMTools SNP 527163 527163 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 564911 564911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1149 SAMTools SNP 567040 567040 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 567046 567046 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 567136 567136 219 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C51%2C0:99 scaffold1149 SAMTools SNP 567237 567237 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1149 SAMTools SNP 587623 587623 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1149 SAMTools SNP 588999 588999 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D45%3BFQ%3D36.9%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C64:67 scaffold1149 SAMTools SNP 589009 589009 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C92:36 scaffold1149 SAMTools SNP 589419 589419 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D43%3BFQ%3D38%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C205:68 scaffold1149 SAMTools SNP 590745 590745 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1149 SAMTools SNP 602611 602611 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1149 SAMTools SNP 602627 602627 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1149 SAMTools SNP 615059 615059 5.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C1%2C0:4 scaffold1149 SAMTools SNP 620410 620410 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1149 SAMTools SNP 620447 620447 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C0%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1149 SAMTools SNP 624917 624917 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold1149 SAMTools SNP 625456 625456 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C7%2C34%3BMQ%3D41%3BFQ%3D-84%3BPV4%3D4.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1149 SAMTools SNP 626456 626456 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1149 SAMTools SNP 626532 626532 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D37%3BFQ%3D-5.45%3BPV4%3D1%2C0.28%2C0.2%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C23:26 scaffold1149 SAMTools SNP 632349 632349 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1149 SAMTools SNP 633809 633809 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C22%2C19%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D0.23%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1149 SAMTools SNP 633969 633969 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1149 SAMTools SNP 634501 634501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 634533 634533 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 634671 634671 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1149 SAMTools SNP 640500 640500 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 642150 642150 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1149 SAMTools SNP 642167 642167 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 642217 642217 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C33%2C0:63 scaffold1149 SAMTools SNP 642854 642854 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold1149 SAMTools SNP 643134 643134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 643169 643169 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D87%3BPV4%3D0.32%2C0.46%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C232:99 scaffold1149 SAMTools SNP 644053 644053 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C4%2C1%3BMQ%3D48%3BFQ%3D44%3BPV4%3D0.31%2C0.043%2C0.1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C240:74 scaffold1149 SAMTools SNP 644937 644937 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D36%3BFQ%3D99.8%3BPV4%3D0.51%2C0.03%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C127:99 scaffold1149 SAMTools SNP 645820 645820 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C7%3BMQ%3D46%3BFQ%3D94%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C230:99 scaffold1149 SAMTools SNP 645853 645853 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1149 SAMTools SNP 645856 645856 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1149 SAMTools SNP 651248 651248 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 656136 656136 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1149 SAMTools SNP 656922 656922 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1149 SAMTools SNP 659961 659961 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D154%3BPV4%3D0.47%2C1%2C0.075%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C204:99 scaffold1149 SAMTools SNP 659981 659981 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1149 SAMTools SNP 660028 660028 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.18%2C1%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1149 SAMTools SNP 660060 660060 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1149 SAMTools SNP 660654 660654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C145:99 scaffold1149 SAMTools SNP 660696 660696 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1149 SAMTools SNP 660718 660718 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 661353 661353 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C26%2C1%3BMQ%3D28%3BFQ%3D64%3BPV4%3D0.068%2C1%2C0.0002%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1149 SAMTools SNP 662789 662789 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C0%2C17%3BMQ%3D36%3BFQ%3D105%3BPV4%3D0.17%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1149 SAMTools SNP 674668 674668 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1149 SAMTools SNP 679673 679673 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1149 SAMTools SNP 712180 712180 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 712196 712196 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 712235 712235 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1149 SAMTools SNP 713157 713157 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold1149 SAMTools SNP 713162 713162 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.099%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C252:99 scaffold1149 SAMTools SNP 718947 718947 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1149 SAMTools SNP 719056 719056 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1149 SAMTools SNP 719069 719069 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1149 SAMTools SNP 721733 721733 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1149 SAMTools SNP 751487 751487 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C33%2C0:63 scaffold1149 SAMTools SNP 751999 751999 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold115 SAMTools SNP 2223 2223 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C26%3BMQ%3D24%3BFQ%3D-68%3BPV4%3D1%2C5.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C41%2C0:52 scaffold115 SAMTools SNP 2694 2694 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C4%2C39%2C0%3BMQ%3D46%3BFQ%3D169%3BPV4%3D0.29%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C246:99 scaffold115 SAMTools SNP 2718 2718 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C5%2C183%2C0%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1.5e-13%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 6806 6806 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.69%3BPV4%3D1%2C0.17%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C32:33 scaffold115 SAMTools SNP 15216 15216 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 16162 16162 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold115 SAMTools SNP 16612 16612 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold115 SAMTools SNP 46908 46908 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold115 SAMTools SNP 47105 47105 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold115 SAMTools SNP 47321 47321 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 47345 47345 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 68200 68200 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D31%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C229%2C0:99 scaffold115 SAMTools SNP 88095 88095 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C7.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C218:92 scaffold115 SAMTools SNP 109321 109321 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold115 SAMTools SNP 126811 126811 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold115 SAMTools SNP 153919 153919 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 154887 154887 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold115 SAMTools SNP 154894 154894 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 161974 161974 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 169350 169350 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C38:41 scaffold115 SAMTools SNP 169381 169381 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.074%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold115 SAMTools SNP 169668 169668 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.025%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold115 SAMTools SNP 169675 169675 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold115 SAMTools SNP 179011 179011 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 179135 179135 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 183863 183863 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold115 SAMTools SNP 183866 183866 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold115 SAMTools SNP 185413 185413 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 189458 189458 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.24%2C1.1e-11%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C252:41 scaffold115 SAMTools SNP 190082 190082 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.44%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C148:39 scaffold115 SAMTools SNP 221791 221791 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold115 SAMTools SNP 222402 222402 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold115 SAMTools SNP 233961 233961 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold115 SAMTools SNP 325021 325021 5.46 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold115 SAMTools SNP 327711 327711 12.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold115 SAMTools SNP 369590 369590 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold115 SAMTools SNP 394887 394887 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.11%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C118:64 scaffold115 SAMTools SNP 395971 395971 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D42%3BFQ%3D11.3%3BPV4%3D0.14%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C38:41 scaffold115 SAMTools SNP 396001 396001 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D47%3BFQ%3D164%3BPV4%3D0.48%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C196:99 scaffold115 SAMTools SNP 396761 396761 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold115 SAMTools SNP 397942 397942 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold115 SAMTools SNP 398114 398114 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold115 SAMTools SNP 398167 398167 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 398726 398726 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold115 SAMTools SNP 399061 399061 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold115 SAMTools SNP 400071 400071 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 400125 400125 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold115 SAMTools SNP 400889 400889 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold115 SAMTools SNP 401279 401279 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C99:99 scaffold115 SAMTools SNP 401310 401310 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold115 SAMTools SNP 401334 401334 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold115 SAMTools SNP 401393 401393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold115 SAMTools SNP 401417 401417 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold115 SAMTools SNP 401442 401442 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C176:99 scaffold115 SAMTools SNP 401918 401918 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.52%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold115 SAMTools SNP 401919 401919 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.45%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold115 SAMTools SNP 402373 402373 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-76;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C206:62 scaffold115 SAMTools SNP 402394 402394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold115 SAMTools SNP 402510 402510 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C216:99 scaffold115 SAMTools SNP 403963 403963 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 405065 405065 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold115 SAMTools SNP 405197 405197 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 405681 405681 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold115 SAMTools SNP 405693 405693 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.056%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold115 SAMTools SNP 406593 406593 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold115 SAMTools SNP 406669 406669 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold115 SAMTools SNP 406704 406704 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold115 SAMTools SNP 409159 409159 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.55%2C6.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold115 SAMTools SNP 409193 409193 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold115 SAMTools SNP 409226 409226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold115 SAMTools SNP 409253 409253 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold115 SAMTools SNP 411591 411591 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold115 SAMTools SNP 411598 411598 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold115 SAMTools SNP 415225 415225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 434682 434682 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2340%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1276%2C141%2C907%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D6.2e-19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 437531 437531 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D32.7%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C71:63 scaffold115 SAMTools SNP 438906 438906 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2488%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C8%2C82%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C84%2C0:99 scaffold115 SAMTools SNP 439845 439845 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C44%2C4%2C23%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.049%2C4.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold115 SAMTools SNP 452063 452063 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold115 SAMTools SNP 452639 452639 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold115 SAMTools SNP 452866 452866 15.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold115 SAMTools SNP 454835 454835 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1357%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C13%2C82%3BMQ%3D43%3BFQ%3D-149%3BPV4%3D1%2C1%2C0.089%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold115 SAMTools SNP 454892 454892 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C93%2C0:99 scaffold115 SAMTools SNP 454991 454991 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 457295 457295 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.45%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold115 SAMTools SNP 457327 457327 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold115 SAMTools SNP 465237 465237 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C4%2C394%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0026%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 466450 466450 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1204%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C930%2C267%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 466513 466513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1036%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C41%2C680%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 466567 466567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D960%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D16%2C0%2C51%2C802%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D2.6e-19%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 466984 466984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1673%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C1548%2C121%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 466996 466996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1611%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1252%2C24%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 467035 467035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1282%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C1179%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 467041 467041 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1485%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C152%2C1233%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D2e-06%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 467557 467557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1760%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1087%2C512%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 468801 468801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1067%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C78%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold115 SAMTools SNP 470285 470285 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0011%2C5.3e-07%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold115 SAMTools SNP 470293 470293 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C12%2C34%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.051%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold115 SAMTools SNP 470968 470968 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.11%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold115 SAMTools SNP 470982 470982 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold115 SAMTools SNP 470994 470994 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold115 SAMTools SNP 471003 471003 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.45%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold115 SAMTools SNP 471208 471208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold115 SAMTools SNP 471247 471247 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.07%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold115 SAMTools SNP 471262 471262 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold115 SAMTools SNP 472052 472052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold115 SAMTools SNP 472413 472413 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold115 SAMTools SNP 472657 472657 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold115 SAMTools SNP 472696 472696 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C5%3BMQ%3D44%3BFQ%3D79%3BPV4%3D0.048%2C0.21%2C0.097%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C151:99 scaffold115 SAMTools SNP 472732 472732 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C10%2C1%3BMQ%3D47%3BFQ%3D64%3BPV4%3D0.0014%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold115 SAMTools SNP 473144 473144 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C4%3BMQ%3D47%3BFQ%3D28%3BPV4%3D0.015%2C1%2C0.002%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold115 SAMTools SNP 473231 473231 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold115 SAMTools SNP 473255 473255 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold115 SAMTools SNP 473268 473268 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00029%2C1.8e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold115 SAMTools SNP 473306 473306 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold115 SAMTools SNP 473779 473779 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold115 SAMTools SNP 473812 473812 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C11%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.54%2C0.12%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold115 SAMTools SNP 473855 473855 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C40%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 474241 474241 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C11%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold115 SAMTools SNP 474334 474334 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C20%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C250:99 scaffold115 SAMTools SNP 474346 474346 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C23%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C240:99 scaffold115 SAMTools SNP 474903 474903 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 474915 474915 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 474979 474979 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 474996 474996 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold115 SAMTools SNP 475889 475889 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold115 SAMTools SNP 475970 475970 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold115 SAMTools SNP 476346 476346 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 478048 478048 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.14%2C0.054%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold115 SAMTools SNP 478051 478051 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.19%2C0.035%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold115 SAMTools SNP 478589 478589 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C68%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 478611 478611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C4%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-12%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 478686 478686 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C12%2C9%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 478726 478726 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C26%2C12%2C9%3BMQ%3D44%3BFQ%3D110%3BPV4%3D0.048%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold115 SAMTools SNP 479857 479857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C39%2C32%3BMQ%3D40%3BFQ%3D150%3BPV4%3D1%2C0.0049%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold115 SAMTools SNP 479923 479923 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D30%3BPV4%3D0.4%2C0.28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C126:60 scaffold115 SAMTools SNP 479964 479964 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold115 SAMTools SNP 480072 480072 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C90%2C4%2C11%3BMQ%3D47%3BFQ%3D70%3BPV4%3D0.0013%2C1%2C0.13%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C218:99 scaffold115 SAMTools SNP 480396 480396 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C22%3BMQ%3D49%3BFQ%3D116%3BPV4%3D1%2C7.8e-12%2C0.034%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C239:99 scaffold115 SAMTools SNP 481988 481988 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C0:69 scaffold115 SAMTools SNP 482224 482224 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold115 SAMTools SNP 485164 485164 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold115 SAMTools SNP 485800 485800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold115 SAMTools SNP 485836 485836 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C144%2C0:99 scaffold115 SAMTools SNP 487150 487150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 487157 487157 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 487681 487681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold115 SAMTools SNP 488182 488182 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold115 SAMTools SNP 488326 488326 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 488586 488586 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 488631 488631 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 489081 489081 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold115 SAMTools SNP 490125 490125 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.00041%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold115 SAMTools SNP 490157 490157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 490940 490940 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold115 SAMTools SNP 491432 491432 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold115 SAMTools SNP 491487 491487 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 493326 493326 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 493908 493908 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 494543 494543 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold115 SAMTools SNP 495495 495495 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 496515 496515 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C54%2C0:79 scaffold115 SAMTools SNP 496621 496621 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C111%2C0:99 scaffold115 SAMTools SNP 498351 498351 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 499639 499639 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 502190 502190 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold115 SAMTools SNP 503019 503019 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold115 SAMTools SNP 503040 503040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 503055 503055 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold115 SAMTools SNP 503561 503561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold115 SAMTools SNP 503960 503960 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 504053 504053 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold115 SAMTools SNP 504271 504271 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 506000 506000 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold115 SAMTools SNP 506016 506016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 506084 506084 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold115 SAMTools SNP 507380 507380 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 508049 508049 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 509181 509181 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 509190 509190 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 509226 509226 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 509292 509292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold115 SAMTools SNP 511096 511096 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold115 SAMTools SNP 511453 511453 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 511466 511466 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 512454 512454 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold115 SAMTools SNP 512979 512979 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold115 SAMTools SNP 513003 513003 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold115 SAMTools SNP 513023 513023 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 513307 513307 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold115 SAMTools SNP 513807 513807 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold115 SAMTools SNP 513867 513867 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold115 SAMTools SNP 513873 513873 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 515273 515273 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 515288 515288 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold115 SAMTools SNP 517231 517231 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold115 SAMTools SNP 517628 517628 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold115 SAMTools SNP 517649 517649 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold115 SAMTools SNP 518257 518257 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 518269 518269 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 519173 519173 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 519189 519189 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 521702 521702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 524021 524021 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold115 SAMTools SNP 524281 524281 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold115 SAMTools SNP 526593 526593 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C4.7e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C58:61 scaffold115 SAMTools SNP 532000 532000 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 534061 534061 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold115 SAMTools SNP 535613 535613 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold115 SAMTools SNP 543558 543558 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold115 SAMTools SNP 547121 547121 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold115 SAMTools SNP 554276 554276 28.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold115 SAMTools SNP 556709 556709 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 556732 556732 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 561012 561012 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold115 SAMTools SNP 561453 561453 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold115 SAMTools SNP 561668 561668 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold115 SAMTools SNP 612622 612622 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 616876 616876 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C221:99 scaffold115 SAMTools SNP 616892 616892 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold115 SAMTools SNP 617741 617741 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold115 SAMTools SNP 617778 617778 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 618132 618132 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold115 SAMTools SNP 618637 618637 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 618639 618639 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 619652 619652 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold115 SAMTools SNP 619735 619735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold115 SAMTools SNP 620829 620829 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold115 SAMTools SNP 621162 621162 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold115 SAMTools SNP 623016 623016 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold115 SAMTools SNP 623537 623537 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold115 SAMTools SNP 623573 623573 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 623577 623577 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 634954 634954 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.33%2C3.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold115 SAMTools SNP 636917 636917 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold115 SAMTools SNP 637313 637313 41.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold115 SAMTools SNP 637377 637377 77.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold115 SAMTools SNP 638139 638139 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold115 SAMTools SNP 638929 638929 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 638947 638947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 639225 639225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 639900 639900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 640277 640277 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C1%2C41%3BMQ%3D50%3BFQ%3D72%3BPV4%3D3e-06%2C1.5e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold115 SAMTools SNP 641732 641732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C38%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold115 SAMTools SNP 642181 642181 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold115 SAMTools SNP 643375 643375 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C44%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold115 SAMTools SNP 643385 643385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 643391 643391 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C0.2%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold115 SAMTools SNP 643409 643409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.081%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 643460 643460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 644218 644218 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.0036%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold115 SAMTools SNP 644867 644867 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C22%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold115 SAMTools SNP 646355 646355 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold115 SAMTools SNP 646379 646379 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold115 SAMTools SNP 646837 646837 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 647235 647235 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold115 SAMTools SNP 647313 647313 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold115 SAMTools SNP 647340 647340 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C218:99 scaffold115 SAMTools SNP 648799 648799 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 648828 648828 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 649160 649160 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold115 SAMTools SNP 649490 649490 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C13%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold115 SAMTools SNP 649702 649702 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C15%2C20%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold115 SAMTools SNP 650121 650121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C49%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold115 SAMTools SNP 650678 650678 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold115 SAMTools SNP 650784 650784 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C212:97 scaffold1154 SAMTools SNP 1810 1810 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 1883 1883 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 1966 1966 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 1981 1981 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 3437 3437 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1154 SAMTools SNP 3539 3539 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1154 SAMTools SNP 54096 54096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7342%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C7264%2C56%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 55094 55094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5682%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C6%2C4234%2C1245%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.036%2C3.4e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 55406 55406 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1154 SAMTools SNP 55465 55465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1713%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C300%2C148%2C1026%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-41%2C1%2C0.068%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 55741 55741 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1288%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C1260%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.49%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 55826 55826 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C33%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C252:99 scaffold1154 SAMTools SNP 56673 56673 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C36%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C21%2C0:39 scaffold1154 SAMTools SNP 118619 118619 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 118820 118820 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 144438 144438 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C231:99 scaffold1154 SAMTools SNP 144463 144463 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.21%2C0.0038%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1154 SAMTools SNP 144785 144785 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.039%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C251:31 scaffold1154 SAMTools SNP 145344 145344 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C18%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1154 SAMTools SNP 148932 148932 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1154 SAMTools SNP 148953 148953 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C24%2C0:45 scaffold1154 SAMTools SNP 149825 149825 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1154 SAMTools SNP 149861 149861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1154 SAMTools SNP 149883 149883 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1154 SAMTools SNP 149942 149942 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1154 SAMTools SNP 158472 158472 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C7.1e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1154 SAMTools SNP 158562 158562 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1154 SAMTools SNP 160109 160109 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00084%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C233:44 scaffold1154 SAMTools SNP 163588 163588 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C19%3BMQ%3D49%3BFQ%3D112%3BPV4%3D1%2C3.7e-05%2C0.2%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C206:99 scaffold1154 SAMTools SNP 164293 164293 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C5%3BMQ%3D49%3BFQ%3D6.2%3BPV4%3D1%2C0.018%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1154 SAMTools SNP 164756 164756 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.63%2C0.18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1154 SAMTools SNP 166478 166478 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1154 SAMTools SNP 168959 168959 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1154 SAMTools SNP 177722 177722 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C203:99 scaffold1154 SAMTools SNP 177736 177736 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.43%2C0.012%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C146:84 scaffold1154 SAMTools SNP 177737 177737 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.43%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C107:86 scaffold1154 SAMTools SNP 179890 179890 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C5%3BMQ%3D48%3BFQ%3D84%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C111:99 scaffold1154 SAMTools SNP 180221 180221 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1154 SAMTools SNP 180222 180222 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.26%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1154 SAMTools SNP 181310 181310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1154 SAMTools SNP 183510 183510 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.38%2C0.27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1154 SAMTools SNP 245833 245833 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 247797 247797 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 249763 249763 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1154 SAMTools SNP 250081 250081 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 250812 250812 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 250815 250815 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1154 SAMTools SNP 251131 251131 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 251142 251142 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1154 SAMTools SNP 251191 251191 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1154 SAMTools SNP 253636 253636 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 254179 254179 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 254189 254189 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1154 SAMTools SNP 254588 254588 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1154 SAMTools SNP 254603 254603 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 256106 256106 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 256249 256249 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold1154 SAMTools SNP 256279 256279 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold1154 SAMTools SNP 256333 256333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1154 SAMTools SNP 256530 256530 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1154 SAMTools SNP 256563 256563 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1154 SAMTools SNP 256599 256599 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C69:72 scaffold1154 SAMTools SNP 258630 258630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1154 SAMTools SNP 259590 259590 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C1%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1154 SAMTools SNP 259672 259672 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1154 SAMTools SNP 260511 260511 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1154 SAMTools SNP 276643 276643 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 276661 276661 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 276911 276911 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 309644 309644 51.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold1154 SAMTools SNP 309691 309691 34.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1154 SAMTools SNP 310526 310526 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 310553 310553 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1154 SAMTools SNP 317899 317899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 317900 317900 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 329448 329448 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 329460 329460 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 337372 337372 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1154 SAMTools SNP 337385 337385 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 337566 337566 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 342373 342373 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 342411 342411 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1154 SAMTools SNP 348484 348484 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold1154 SAMTools SNP 366725 366725 23.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold1154 SAMTools SNP 372289 372289 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1154 SAMTools SNP 375756 375756 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold1154 SAMTools SNP 375765 375765 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1154 SAMTools SNP 382805 382805 23.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold1154 SAMTools SNP 388393 388393 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1154 SAMTools SNP 388443 388443 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 388480 388480 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 415244 415244 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 458456 458456 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1154 SAMTools SNP 458466 458466 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1154 SAMTools SNP 463872 463872 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C0:57 scaffold1154 SAMTools SNP 466444 466444 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1154 SAMTools SNP 466648 466648 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 467952 467952 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1154 SAMTools SNP 469217 469217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1154 SAMTools SNP 469270 469270 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold1154 SAMTools SNP 469409 469409 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1154 SAMTools SNP 469543 469543 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1154 SAMTools SNP 479365 479365 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1154 SAMTools SNP 502556 502556 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold1154 SAMTools SNP 504544 504544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C88%2C78%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 506854 506854 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.53%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1154 SAMTools SNP 506855 506855 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1154 SAMTools SNP 507039 507039 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1154 SAMTools SNP 520727 520727 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C74:30 scaffold1154 SAMTools SNP 521390 521390 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1154 SAMTools SNP 522190 522190 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 523512 523512 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 524272 524272 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C12%2C0:21 scaffold1154 SAMTools SNP 524299 524299 94.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold1154 SAMTools SNP 524332 524332 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1154 SAMTools SNP 526536 526536 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1154 SAMTools SNP 526580 526580 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1154 SAMTools SNP 526581 526581 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1154 SAMTools SNP 526755 526755 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1154 SAMTools SNP 527141 527141 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1154 SAMTools SNP 528969 528969 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1154 SAMTools SNP 529215 529215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1154 SAMTools SNP 529237 529237 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 535926 535926 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 536328 536328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 536548 536548 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1154 SAMTools SNP 536577 536577 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1154 SAMTools SNP 536816 536816 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 537532 537532 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 538781 538781 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1154 SAMTools SNP 541334 541334 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 543311 543311 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 543345 543345 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1154 SAMTools SNP 543352 543352 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1154 SAMTools SNP 543682 543682 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1154 SAMTools SNP 543698 543698 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C30%2C0:57 scaffold1154 SAMTools SNP 544475 544475 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1154 SAMTools SNP 546785 546785 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold1154 SAMTools SNP 547869 547869 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold1154 SAMTools SNP 547875 547875 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1154 SAMTools SNP 547905 547905 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1154 SAMTools SNP 548839 548839 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1154 SAMTools SNP 549965 549965 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold1154 SAMTools SNP 550245 550245 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 573851 573851 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1154 SAMTools SNP 581193 581193 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1154 SAMTools SNP 585983 585983 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 585987 585987 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1154 SAMTools SNP 586103 586103 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 586118 586118 33.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1154 SAMTools SNP 589159 589159 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 589190 589190 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 589307 589307 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 590383 590383 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1154 SAMTools SNP 590488 590488 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1154 SAMTools SNP 590891 590891 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1154 SAMTools SNP 592452 592452 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 592479 592479 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 592753 592753 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1154 SAMTools SNP 593395 593395 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1154 SAMTools SNP 593399 593399 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1154 SAMTools SNP 593419 593419 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1154 SAMTools SNP 594586 594586 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1154 SAMTools SNP 594616 594616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1154 SAMTools SNP 594656 594656 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.52%2C0.26%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold1154 SAMTools SNP 594673 594673 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1154 SAMTools SNP 596061 596061 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 598041 598041 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1154 SAMTools SNP 605794 605794 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C23%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.73%2C4.2e-61%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1154 SAMTools SNP 606600 606600 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.47%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C254:99 scaffold1154 SAMTools SNP 606610 606610 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.026%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1154 SAMTools SNP 607952 607952 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.53%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1154 SAMTools SNP 608241 608241 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C7%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1154 SAMTools SNP 610042 610042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1154 SAMTools SNP 611955 611955 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0013%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1154 SAMTools SNP 614171 614171 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1154 SAMTools SNP 615021 615021 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1154 SAMTools SNP 637955 637955 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1154 SAMTools SNP 639296 639296 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C12:15 scaffold1154 SAMTools SNP 639606 639606 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 640272 640272 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 640686 640686 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1154 SAMTools SNP 640723 640723 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 641749 641749 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 642282 642282 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C76%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 642316 642316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C12%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 642646 642646 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C27%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1154 SAMTools SNP 642670 642670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 642724 642724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 643266 643266 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C17%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1154 SAMTools SNP 643305 643305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C28%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 644802 644802 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C27%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C242:99 scaffold1154 SAMTools SNP 644983 644983 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 645017 645017 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 645086 645086 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 645151 645151 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 645280 645280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 646937 646937 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.2%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 647855 647855 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 650040 650040 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold1154 SAMTools SNP 650522 650522 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.63%2C3.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1154 SAMTools SNP 650707 650707 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.69%2C8.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1154 SAMTools SNP 650924 650924 79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C69%2C0:99 scaffold1154 SAMTools SNP 651051 651051 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1154 SAMTools SNP 651137 651137 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1154 SAMTools SNP 651145 651145 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1154 SAMTools SNP 652159 652159 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1154 SAMTools SNP 652191 652191 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1154 SAMTools SNP 652986 652986 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 654002 654002 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1154 SAMTools SNP 659157 659157 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 666606 666606 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.17%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold1154 SAMTools SNP 669271 669271 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1154 SAMTools SNP 671178 671178 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 672488 672488 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C202:57 scaffold1154 SAMTools SNP 673400 673400 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 674934 674934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1154 SAMTools SNP 674968 674968 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C63%2C0:99 scaffold1154 SAMTools SNP 675228 675228 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1154 SAMTools SNP 675356 675356 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1154 SAMTools SNP 675916 675916 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C53%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 676275 676275 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.38%2C4.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1154 SAMTools SNP 677647 677647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 678943 678943 42.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1154 SAMTools SNP 678995 678995 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1154 SAMTools SNP 679086 679086 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C39%2C0:75 scaffold1154 SAMTools SNP 723622 723622 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1154 SAMTools SNP 725086 725086 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C169:99 scaffold1154 SAMTools SNP 727348 727348 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.054%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1154 SAMTools SNP 727492 727492 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1154 SAMTools SNP 727941 727941 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1154 SAMTools SNP 729705 729705 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold1154 SAMTools SNP 729708 729708 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1154 SAMTools SNP 729731 729731 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1154 SAMTools SNP 729738 729738 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C215:99 scaffold1154 SAMTools SNP 730453 730453 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C232:99 scaffold1154 SAMTools SNP 730495 730495 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1154 SAMTools SNP 730768 730768 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1154 SAMTools SNP 730792 730792 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.3%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1154 SAMTools SNP 731830 731830 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1154 SAMTools SNP 731848 731848 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1154 SAMTools SNP 733526 733526 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1154 SAMTools SNP 734565 734565 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1154 SAMTools SNP 734842 734842 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C156:99 scaffold1154 SAMTools SNP 735241 735241 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1154 SAMTools SNP 735808 735808 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1154 SAMTools SNP 735976 735976 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1154 SAMTools SNP 736387 736387 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1154 SAMTools SNP 737359 737359 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.27%2C7.9e-16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1154 SAMTools SNP 737772 737772 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1154 SAMTools SNP 737792 737792 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold1154 SAMTools SNP 738149 738149 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold1154 SAMTools SNP 738893 738893 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.13%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C174:48 scaffold1154 SAMTools SNP 738965 738965 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1154 SAMTools SNP 738992 738992 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1154 SAMTools SNP 739410 739410 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1154 SAMTools SNP 743363 743363 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C16%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0066%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1154 SAMTools SNP 743390 743390 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C40%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1154 SAMTools SNP 744199 744199 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C55%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1154 SAMTools SNP 744266 744266 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.34%2C0.01%2C1%2C1.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1154 SAMTools SNP 744967 744967 66.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C15%2C0:27 scaffold1154 SAMTools SNP 745075 745075 46.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1154 SAMTools SNP 745264 745264 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C15%2C8%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.35%2C3.3e-37%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1154 SAMTools SNP 745401 745401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 745782 745782 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.67%2C0.48%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1154 SAMTools SNP 745851 745851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.089%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 750914 750914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1154 SAMTools SNP 751003 751003 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1154 SAMTools SNP 753236 753236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1154 SAMTools SNP 753582 753582 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.057%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1154 SAMTools SNP 753802 753802 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C43%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 754276 754276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C63%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C9.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 754282 754282 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C31%2C63%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1154 SAMTools SNP 754627 754627 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C42%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0083%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 755907 755907 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 756990 756990 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C66%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1154 SAMTools SNP 757006 757006 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C58%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1154 SAMTools SNP 757075 757075 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C4%2C12%2C3%3BMQ%3D48%3BFQ%3D202%3BPV4%3D0.13%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1154 SAMTools SNP 757084 757084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C8%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1154 SAMTools SNP 758711 758711 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C82:61 scaffold1154 SAMTools SNP 759103 759103 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C8.4e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C156:53 scaffold1154 SAMTools SNP 760302 760302 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0002%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C173:63 scaffold1154 SAMTools SNP 760360 760360 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C174:48 scaffold1154 SAMTools SNP 761370 761370 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold1154 SAMTools SNP 762557 762557 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1154 SAMTools SNP 762831 762831 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.11%2C4.8e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1154 SAMTools SNP 762960 762960 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1154 SAMTools SNP 762983 762983 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1154 SAMTools SNP 764549 764549 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 766256 766256 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 766771 766771 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 766870 766870 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1154 SAMTools SNP 767252 767252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1154 SAMTools SNP 767387 767387 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.5%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1154 SAMTools SNP 768541 768541 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 768559 768559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.069%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 768589 768589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1154 SAMTools SNP 772265 772265 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1154 SAMTools SNP 773996 773996 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1154 SAMTools SNP 774378 774378 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.18%2C2.5e-05%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1154 SAMTools SNP 774381 774381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 785233 785233 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1154 SAMTools SNP 786825 786825 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C90%2C0:99 scaffold1154 SAMTools SNP 789563 789563 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C196:30 scaffold1154 SAMTools SNP 789611 789611 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1154 SAMTools SNP 793289 793289 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1154 SAMTools SNP 798558 798558 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1154 SAMTools SNP 799677 799677 10.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1154 SAMTools SNP 800762 800762 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D10.9%3BPV4%3D1%2C0.00072%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold1154 SAMTools SNP 801760 801760 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 801791 801791 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 801812 801812 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 804005 804005 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.37%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C148:99 scaffold1154 SAMTools SNP 804025 804025 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1154 SAMTools SNP 804779 804779 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C235:99 scaffold1154 SAMTools SNP 804810 804810 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1154 SAMTools SNP 804843 804843 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0033%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1154 SAMTools SNP 805330 805330 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C31%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1154 SAMTools SNP 807339 807339 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1154 SAMTools SNP 810491 810491 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1154 SAMTools SNP 811403 811403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 812328 812328 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1154 SAMTools SNP 819406 819406 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1154 SAMTools SNP 819461 819461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1154 SAMTools SNP 819666 819666 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1154 SAMTools SNP 825982 825982 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.0021%2C3.6e-07%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1154 SAMTools SNP 826380 826380 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1154 SAMTools SNP 826604 826604 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1154 SAMTools SNP 826692 826692 179 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C42%2C0%2C208%2C26%2C205:81 scaffold1154 SAMTools SNP 851873 851873 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1154 SAMTools SNP 922502 922502 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C57%2C0:99 scaffold1154 SAMTools SNP 922981 922981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1154 SAMTools SNP 922990 922990 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1154 SAMTools SNP 924158 924158 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1154 SAMTools SNP 924212 924212 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1154 SAMTools SNP 931662 931662 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.07%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 931704 931704 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.56%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C200:99 scaffold1154 SAMTools SNP 938000 938000 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1154 SAMTools SNP 942657 942657 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 942746 942746 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.39%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1154 SAMTools SNP 945131 945131 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C50%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.64%2C0.09%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1154 SAMTools SNP 945173 945173 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C46%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1154 SAMTools SNP 947258 947258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 949157 949157 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C0%2C8%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C193:64 scaffold1154 SAMTools SNP 949166 949166 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C60%2C0%2C7%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C192:49 scaffold1154 SAMTools SNP 950759 950759 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1154 SAMTools SNP 950989 950989 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1154 SAMTools SNP 951303 951303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1154 SAMTools SNP 951315 951315 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1154 SAMTools SNP 951468 951468 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1154 SAMTools SNP 951495 951495 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C0.22%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1154 SAMTools SNP 951890 951890 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1154 SAMTools SNP 951938 951938 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1154 SAMTools SNP 952364 952364 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1154 SAMTools SNP 952680 952680 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C64:43 scaffold1154 SAMTools SNP 952729 952729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1154 SAMTools SNP 953066 953066 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C15:18 scaffold1154 SAMTools SNP 953189 953189 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1154 SAMTools SNP 955124 955124 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold1154 SAMTools SNP 955178 955178 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1154 SAMTools SNP 956195 956195 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 956198 956198 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 956206 956206 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1154 SAMTools SNP 958611 958611 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 958685 958685 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1154 SAMTools SNP 958697 958697 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 959316 959316 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 959319 959319 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 966884 966884 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.032%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1154 SAMTools SNP 966892 966892 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1154 SAMTools SNP 966898 966898 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold1154 SAMTools SNP 967015 967015 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 967024 967024 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 967691 967691 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1154 SAMTools SNP 967822 967822 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 968103 968103 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 968157 968157 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 968906 968906 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 968942 968942 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1154 SAMTools SNP 969389 969389 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 969822 969822 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1154 SAMTools SNP 969882 969882 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1154 SAMTools SNP 970929 970929 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1154 SAMTools SNP 975225 975225 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C5.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C127:58 scaffold1154 SAMTools SNP 991904 991904 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 992246 992246 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 1027430 1027430 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1154 SAMTools SNP 1036643 1036643 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1154 SAMTools SNP 1036679 1036679 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1154 SAMTools SNP 1036687 1036687 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1154 SAMTools SNP 1037810 1037810 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C2%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1154 SAMTools SNP 1038289 1038289 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C32%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6e-24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1154 SAMTools SNP 1039355 1039355 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1154 SAMTools SNP 1082968 1082968 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1154 SAMTools SNP 1083416 1083416 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C154:42 scaffold1154 SAMTools SNP 1083685 1083685 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.46%2C3.9e-14%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C197:99 scaffold1154 SAMTools SNP 1083733 1083733 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1154 SAMTools SNP 1084089 1084089 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1154 SAMTools SNP 1084231 1084231 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1154 SAMTools SNP 1149313 1149313 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1154 SAMTools SNP 1149332 1149332 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1155 SAMTools SNP 89 89 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1155 SAMTools SNP 336 336 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C229:53 scaffold1155 SAMTools SNP 1164 1164 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 1217 1217 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C246%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C2.4e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1155 SAMTools SNP 1235 1235 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C78%2C178%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.00096%2C1%2C0.28%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1155 SAMTools SNP 1238 1238 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1155 SAMTools SNP 1358 1358 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C71%2C277%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.03%2C1%2C0.29%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1155 SAMTools SNP 5526 5526 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1155 SAMTools SNP 5529 5529 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1155 SAMTools SNP 6036 6036 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1155 SAMTools SNP 6048 6048 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.5e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1155 SAMTools SNP 6082 6082 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 6189 6189 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1155 SAMTools SNP 6564 6564 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C151:99 scaffold1155 SAMTools SNP 6597 6597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1155 SAMTools SNP 6881 6881 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold1155 SAMTools SNP 7087 7087 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1155 SAMTools SNP 7102 7102 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C15%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.66%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1155 SAMTools SNP 7262 7262 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1155 SAMTools SNP 8623 8623 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1155 SAMTools SNP 22831 22831 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0104%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1155 SAMTools SNP 24859 24859 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1155 SAMTools SNP 24907 24907 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1155 SAMTools SNP 26447 26447 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1155 SAMTools SNP 26494 26494 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1155 SAMTools SNP 26926 26926 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold1155 SAMTools SNP 26955 26955 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 27022 27022 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 29706 29706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 29718 29718 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 29873 29873 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 29934 29934 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 30093 30093 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1155 SAMTools SNP 30152 30152 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 30351 30351 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1155 SAMTools SNP 30390 30390 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1155 SAMTools SNP 31629 31629 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C197:47 scaffold1155 SAMTools SNP 32321 32321 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1155 SAMTools SNP 33492 33492 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1155 SAMTools SNP 33888 33888 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1155 SAMTools SNP 37208 37208 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1155 SAMTools SNP 37467 37467 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1155 SAMTools SNP 37487 37487 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1155 SAMTools SNP 39729 39729 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C30%2C0:57 scaffold1155 SAMTools SNP 40114 40114 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C5.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1155 SAMTools SNP 40498 40498 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1155 SAMTools SNP 42617 42617 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1155 SAMTools SNP 42626 42626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1155 SAMTools SNP 43484 43484 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C4%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1155 SAMTools SNP 46750 46750 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.0018%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C158:99 scaffold1155 SAMTools SNP 46772 46772 99.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold1155 SAMTools SNP 48036 48036 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1155 SAMTools SNP 48172 48172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1155 SAMTools SNP 48546 48546 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1155 SAMTools SNP 72455 72455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1155 SAMTools SNP 73556 73556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1155 SAMTools SNP 76014 76014 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1155 SAMTools SNP 76113 76113 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C51%2C0:99 scaffold1155 SAMTools SNP 76399 76399 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1155 SAMTools SNP 76411 76411 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1155 SAMTools SNP 77585 77585 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1155 SAMTools SNP 78836 78836 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1155 SAMTools SNP 79190 79190 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C69:72 scaffold1155 SAMTools SNP 79250 79250 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.31%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1155 SAMTools SNP 79251 79251 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1155 SAMTools SNP 79718 79718 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C330%2C0%2C217%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1155 SAMTools SNP 81924 81924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1155 SAMTools SNP 82559 82559 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1155 SAMTools SNP 83690 83690 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold1155 SAMTools SNP 83901 83901 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1155 SAMTools SNP 84020 84020 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1155 SAMTools SNP 86146 86146 16.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1155 SAMTools SNP 86777 86777 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1155 SAMTools SNP 87509 87509 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1155 SAMTools SNP 88440 88440 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 166529 166529 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1155 SAMTools SNP 178211 178211 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1155 SAMTools SNP 178243 178243 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1155 SAMTools SNP 178528 178528 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1155 SAMTools SNP 180292 180292 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1155 SAMTools SNP 180327 180327 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 180484 180484 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1155 SAMTools SNP 180508 180508 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 180514 180514 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1155 SAMTools SNP 180701 180701 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 134 134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 1923 1923 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1157 SAMTools SNP 30402 30402 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1157 SAMTools SNP 35528 35528 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 35803 35803 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1157 SAMTools SNP 35827 35827 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1157 SAMTools SNP 35898 35898 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1157 SAMTools SNP 37229 37229 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1157 SAMTools SNP 60314 60314 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C71%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C217%2C0:99 scaffold1157 SAMTools SNP 60826 60826 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C87%2C0:87 scaffold1157 SAMTools SNP 61803 61803 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.78%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold1157 SAMTools SNP 62344 62344 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C126%2C0:99 scaffold1157 SAMTools SNP 62417 62417 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C38%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1157 SAMTools SNP 63583 63583 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C19%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1.4e-08%2C4.8e-08%2C1%2C3.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1157 SAMTools SNP 63633 63633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C106%2C0%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 67113 67113 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C41%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 67290 67290 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C84%2C0:99 scaffold1157 SAMTools SNP 67636 67636 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1157 SAMTools SNP 67857 67857 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.54%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1157 SAMTools SNP 68168 68168 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C42%2C0:81 scaffold1157 SAMTools SNP 68243 68243 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1157 SAMTools SNP 72034 72034 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold1157 SAMTools SNP 72272 72272 12.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1157 SAMTools SNP 73228 73228 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C100:33 scaffold1157 SAMTools SNP 77247 77247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C35%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 77272 77272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C68%2C4%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C7.5e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 77512 77512 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C11%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1157 SAMTools SNP 78403 78403 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 78736 78736 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C21%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.42%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1157 SAMTools SNP 81009 81009 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold1157 SAMTools SNP 81533 81533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 84572 84572 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00076%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1157 SAMTools SNP 84617 84617 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1157 SAMTools SNP 85382 85382 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C32:35 scaffold1157 SAMTools SNP 87103 87103 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 87152 87152 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.031%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1157 SAMTools SNP 89328 89328 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C181%2C107%2C151%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.8%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1157 SAMTools SNP 98772 98772 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1157 SAMTools SNP 105656 105656 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1157 SAMTools SNP 114487 114487 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1157 SAMTools SNP 114537 114537 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1157 SAMTools SNP 114610 114610 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1157 SAMTools SNP 114951 114951 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1157 SAMTools SNP 121670 121670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 122086 122086 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D46%3BFQ%3D95%3BPV4%3D0.51%2C0.29%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C254:99 scaffold1157 SAMTools SNP 124632 124632 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1157 SAMTools SNP 124668 124668 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1157 SAMTools SNP 125004 125004 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1157 SAMTools SNP 125537 125537 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1157 SAMTools SNP 125632 125632 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C21:24 scaffold1157 SAMTools SNP 125641 125641 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1157 SAMTools SNP 126187 126187 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1157 SAMTools SNP 126195 126195 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1157 SAMTools SNP 126220 126220 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1157 SAMTools SNP 126843 126843 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1157 SAMTools SNP 126891 126891 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1157 SAMTools SNP 127662 127662 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1157 SAMTools SNP 128047 128047 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1157 SAMTools SNP 129675 129675 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.00028%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold1157 SAMTools SNP 136081 136081 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.53%2C1.3e-17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1157 SAMTools SNP 139339 139339 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1157 SAMTools SNP 139887 139887 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1157 SAMTools SNP 149142 149142 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1157 SAMTools SNP 155107 155107 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1157 SAMTools SNP 155590 155590 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold1157 SAMTools SNP 155764 155764 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C10%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.064%2C0.00013%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1157 SAMTools SNP 162600 162600 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold1157 SAMTools SNP 162625 162625 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C226:99 scaffold1157 SAMTools SNP 172567 172567 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 175670 175670 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C151:77 scaffold1157 SAMTools SNP 178778 178778 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.44%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C74:77 scaffold1157 SAMTools SNP 178790 178790 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1157 SAMTools SNP 178856 178856 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1157 SAMTools SNP 178887 178887 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1157 SAMTools SNP 178925 178925 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1157 SAMTools SNP 182519 182519 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1157 SAMTools SNP 185294 185294 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1157 SAMTools SNP 190384 190384 25.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold1157 SAMTools SNP 190514 190514 97.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold1157 SAMTools SNP 194080 194080 52.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1157 SAMTools SNP 218321 218321 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 219186 219186 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 234904 234904 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 234919 234919 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 234928 234928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1157 SAMTools SNP 234951 234951 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1157 SAMTools SNP 235250 235250 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1157 SAMTools SNP 236558 236558 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.048%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C177:71 scaffold1157 SAMTools SNP 236590 236590 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.48%2C1%2C2.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1157 SAMTools SNP 238980 238980 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1157 SAMTools SNP 239443 239443 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.43%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1157 SAMTools SNP 265886 265886 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D44%3BFQ%3D114%3BPV4%3D0.51%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C230:99 scaffold1157 SAMTools SNP 266412 266412 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1157 SAMTools SNP 266475 266475 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1157 SAMTools SNP 268791 268791 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D9.55%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C37:39 scaffold1157 SAMTools SNP 268857 268857 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C0.33%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1157 SAMTools SNP 272155 272155 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1157 SAMTools SNP 275351 275351 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1157 SAMTools SNP 284454 284454 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C63%2C0:99 scaffold1157 SAMTools SNP 285804 285804 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D39%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C129:66 scaffold1157 SAMTools SNP 285807 285807 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1159 SAMTools SNP 326 326 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C38%2C0%3BMQ%3D48%3BFQ%3D28%3BPV4%3D0.095%2C0.41%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C55:58 scaffold1159 SAMTools SNP 1023 1023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C18%2C21%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C0.0045%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 1443 1443 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C8%2C4%3BMQ%3D45%3BFQ%3D137%3BPV4%3D0.41%2C1%2C0.012%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1159 SAMTools SNP 1537 1537 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C24%2C0:45 scaffold1159 SAMTools SNP 2874 2874 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C12%2C1%3BMQ%3D40%3BFQ%3D151%3BPV4%3D0.42%2C0.41%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C247:99 scaffold1159 SAMTools SNP 4157 4157 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C46%3BMQ%3D30%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1159 SAMTools SNP 4725 4725 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1159 SAMTools SNP 4745 4745 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1159 SAMTools SNP 31753 31753 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1159 SAMTools SNP 32930 32930 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 33489 33489 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 33574 33574 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 33576 33576 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 39966 39966 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1159 SAMTools SNP 40355 40355 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D38%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C42%2C0:81 scaffold1159 SAMTools SNP 40416 40416 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1159 SAMTools SNP 45371 45371 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C78:37 scaffold1159 SAMTools SNP 46234 46234 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1159 SAMTools SNP 46876 46876 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1159 SAMTools SNP 46897 46897 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1159 SAMTools SNP 48660 48660 82.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold1159 SAMTools SNP 48739 48739 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C187:99 scaffold1159 SAMTools SNP 48944 48944 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C187:99 scaffold1159 SAMTools SNP 49042 49042 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.31%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1159 SAMTools SNP 49233 49233 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C67:70 scaffold1159 SAMTools SNP 49490 49490 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1159 SAMTools SNP 49524 49524 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C131:99 scaffold1159 SAMTools SNP 49529 49529 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1159 SAMTools SNP 49545 49545 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1159 SAMTools SNP 49547 49547 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1159 SAMTools SNP 49675 49675 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1159 SAMTools SNP 49713 49713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C18%2C4%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1159 SAMTools SNP 49714 49714 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1159 SAMTools SNP 49964 49964 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1159 SAMTools SNP 50029 50029 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1159 SAMTools SNP 50060 50060 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C239:99 scaffold1159 SAMTools SNP 51886 51886 22.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold1159 SAMTools SNP 51987 51987 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold1159 SAMTools SNP 52128 52128 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1159 SAMTools SNP 52137 52137 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1159 SAMTools SNP 52332 52332 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1159 SAMTools SNP 52343 52343 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1159 SAMTools SNP 52415 52415 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1159 SAMTools SNP 52440 52440 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1159 SAMTools SNP 52615 52615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1159 SAMTools SNP 63614 63614 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1159 SAMTools SNP 64224 64224 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1159 SAMTools SNP 64445 64445 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1159 SAMTools SNP 65965 65965 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 66031 66031 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1159 SAMTools SNP 66383 66383 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1159 SAMTools SNP 67818 67818 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1159 SAMTools SNP 68475 68475 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 69532 69532 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1159 SAMTools SNP 80679 80679 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1159 SAMTools SNP 101657 101657 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C99%2C0:99 scaffold1159 SAMTools SNP 101660 101660 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C99%2C0:99 scaffold1159 SAMTools SNP 101705 101705 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C65%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C196%2C0:99 scaffold1159 SAMTools SNP 105557 105557 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C24%2C0:45 scaffold1159 SAMTools SNP 106845 106845 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0374%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1159 SAMTools SNP 107016 107016 30.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold1159 SAMTools SNP 107431 107431 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C84%2C0:99 scaffold1159 SAMTools SNP 107934 107934 54.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1159 SAMTools SNP 109267 109267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C19%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 109311 109311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C62%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 113968 113968 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1159 SAMTools SNP 113989 113989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1159 SAMTools SNP 114651 114651 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 120816 120816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 121821 121821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C0.048%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 121833 121833 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D36%3BPV4%3D8.9e-08%2C1.5e-11%2C1%2C3.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1159 SAMTools SNP 121881 121881 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C11%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 123692 123692 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C5%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1159 SAMTools SNP 126841 126841 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C12%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 127506 127506 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C109%2C22%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 127692 127692 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 127909 127909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.014%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 128989 128989 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1159 SAMTools SNP 140992 140992 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1159 SAMTools SNP 154269 154269 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 154383 154383 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1159 SAMTools SNP 154778 154778 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1159 SAMTools SNP 155975 155975 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1159 SAMTools SNP 155999 155999 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 167148 167148 10.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1159 SAMTools SNP 169025 169025 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold1159 SAMTools SNP 171234 171234 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1159 SAMTools SNP 171527 171527 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1159 SAMTools SNP 172898 172898 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1159 SAMTools SNP 174031 174031 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1159 SAMTools SNP 174051 174051 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1159 SAMTools SNP 174245 174245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C29%2C84%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 175399 175399 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 175431 175431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1159 SAMTools SNP 178441 178441 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C51%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.00057%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1159 SAMTools SNP 183368 183368 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C25%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.39%2C1%2C4.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1159 SAMTools SNP 183412 183412 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.46%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1159 SAMTools SNP 183421 183421 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.4%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold116 SAMTools SNP 5718 5718 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 6737 6737 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 7630 7630 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold116 SAMTools SNP 60262 60262 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 84942 84942 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold116 SAMTools SNP 84951 84951 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold116 SAMTools SNP 84978 84978 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold116 SAMTools SNP 84991 84991 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold116 SAMTools SNP 85458 85458 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold116 SAMTools SNP 85500 85500 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold116 SAMTools SNP 86534 86534 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold116 SAMTools SNP 99671 99671 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold116 SAMTools SNP 102341 102341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C27%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold116 SAMTools SNP 102359 102359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.28%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold116 SAMTools SNP 102394 102394 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold116 SAMTools SNP 102410 102410 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold116 SAMTools SNP 104445 104445 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold116 SAMTools SNP 104503 104503 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold116 SAMTools SNP 105374 105374 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C90:93 scaffold116 SAMTools SNP 105528 105528 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold116 SAMTools SNP 105554 105554 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold116 SAMTools SNP 107059 107059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold116 SAMTools SNP 107116 107116 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold116 SAMTools SNP 111129 111129 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold116 SAMTools SNP 111171 111171 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold116 SAMTools SNP 116789 116789 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold116 SAMTools SNP 164168 164168 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold116 SAMTools SNP 170983 170983 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 171024 171024 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold116 SAMTools SNP 171063 171063 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold116 SAMTools SNP 171392 171392 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold116 SAMTools SNP 171500 171500 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold116 SAMTools SNP 171581 171581 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 171602 171602 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 174015 174015 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold116 SAMTools SNP 177899 177899 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold116 SAMTools SNP 177925 177925 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold116 SAMTools SNP 177961 177961 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.079%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold116 SAMTools SNP 179860 179860 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold116 SAMTools SNP 196626 196626 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C16%3BMQ%3D48%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C217%2C0:99 scaffold116 SAMTools SNP 199479 199479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold116 SAMTools SNP 199814 199814 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D39%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C9%2C0:16 scaffold116 SAMTools SNP 199832 199832 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 199978 199978 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 201565 201565 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C65%3BMQ%3D42%3BFQ%3D6.2%3BPV4%3D1%2C1%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C32:35 scaffold116 SAMTools SNP 201586 201586 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D22%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C81%2C0:99 scaffold116 SAMTools SNP 202830 202830 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 202853 202853 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold116 SAMTools SNP 204623 204623 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C2%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold116 SAMTools SNP 204680 204680 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C20%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold116 SAMTools SNP 207354 207354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold116 SAMTools SNP 208395 208395 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C74%2C12%2C13%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.52%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold116 SAMTools SNP 208968 208968 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C73%2C15%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold116 SAMTools SNP 209539 209539 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C81%2C101%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.41%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold116 SAMTools SNP 209569 209569 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C115%2C2%2C19%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.74%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold116 SAMTools SNP 210074 210074 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold116 SAMTools SNP 215813 215813 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold116 SAMTools SNP 216821 216821 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold116 SAMTools SNP 217372 217372 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold116 SAMTools SNP 219772 219772 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold116 SAMTools SNP 220554 220554 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold116 SAMTools SNP 220589 220589 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C61:64 scaffold116 SAMTools SNP 223237 223237 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold116 SAMTools SNP 223245 223245 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold116 SAMTools SNP 225667 225667 173 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C76:79 scaffold116 SAMTools SNP 226715 226715 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold116 SAMTools SNP 229422 229422 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.051%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C20:23 scaffold116 SAMTools SNP 229441 229441 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold116 SAMTools SNP 229721 229721 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold116 SAMTools SNP 229739 229739 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 13592 13592 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1160 SAMTools SNP 13596 13596 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1160 SAMTools SNP 24110 24110 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1160 SAMTools SNP 34008 34008 78.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1160 SAMTools SNP 40700 40700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C124%2C47%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1160 SAMTools SNP 43391 43391 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 43461 43461 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1160 SAMTools SNP 43500 43500 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1160 SAMTools SNP 43507 43507 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1160 SAMTools SNP 43824 43824 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1160 SAMTools SNP 44839 44839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 50714 50714 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1160 SAMTools SNP 50729 50729 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1160 SAMTools SNP 52496 52496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1160 SAMTools SNP 52763 52763 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C20%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.027%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1160 SAMTools SNP 53458 53458 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D4e-05%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1160 SAMTools SNP 53922 53922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1160 SAMTools SNP 53946 53946 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C23%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C204:99 scaffold1160 SAMTools SNP 54823 54823 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1160 SAMTools SNP 54919 54919 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1160 SAMTools SNP 55277 55277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1160 SAMTools SNP 56464 56464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1160 SAMTools SNP 56494 56494 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1160 SAMTools SNP 56521 56521 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1160 SAMTools SNP 57785 57785 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold1160 SAMTools SNP 57940 57940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C0.39%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1160 SAMTools SNP 58603 58603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1160 SAMTools SNP 58696 58696 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.001%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C243:47 scaffold1160 SAMTools SNP 60364 60364 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold1160 SAMTools SNP 60430 60430 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1160 SAMTools SNP 60770 60770 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1160 SAMTools SNP 60812 60812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C5.4e-14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 60920 60920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 62641 62641 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C184:60 scaffold1160 SAMTools SNP 62701 62701 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1160 SAMTools SNP 62707 62707 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1160 SAMTools SNP 63265 63265 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1160 SAMTools SNP 63786 63786 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1160 SAMTools SNP 63798 63798 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D1%2C0.14%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C52:55 scaffold1160 SAMTools SNP 64703 64703 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1160 SAMTools SNP 64721 64721 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1160 SAMTools SNP 64892 64892 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1160 SAMTools SNP 65286 65286 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1160 SAMTools SNP 65307 65307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 65316 65316 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1160 SAMTools SNP 65506 65506 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.36%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C104:28 scaffold1160 SAMTools SNP 65527 65527 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1160 SAMTools SNP 65742 65742 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.43%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C193:99 scaffold1160 SAMTools SNP 67210 67210 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold1160 SAMTools SNP 104595 104595 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.03%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1160 SAMTools SNP 111136 111136 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1160 SAMTools SNP 111327 111327 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C167:31 scaffold1160 SAMTools SNP 111329 111329 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C49:52 scaffold1160 SAMTools SNP 114671 114671 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1160 SAMTools SNP 125716 125716 8.67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C24%2C0:29 scaffold1160 SAMTools SNP 232277 232277 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1160 SAMTools SNP 239956 239956 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1160 SAMTools SNP 240929 240929 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1160 SAMTools SNP 240982 240982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1160 SAMTools SNP 253997 253997 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 258949 258949 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 259133 259133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 263662 263662 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.25%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold1160 SAMTools SNP 264033 264033 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1160 SAMTools SNP 264422 264422 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 267793 267793 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C102:99 scaffold1160 SAMTools SNP 267832 267832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1160 SAMTools SNP 268649 268649 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1160 SAMTools SNP 270983 270983 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1160 SAMTools SNP 272134 272134 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D42%3BFQ%3D58%3BPV4%3D0.49%2C0.23%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C121:88 scaffold1160 SAMTools SNP 272931 272931 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1160 SAMTools SNP 277586 277586 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.029%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1160 SAMTools SNP 311469 311469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C55%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1160 SAMTools SNP 313849 313849 69.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold1160 SAMTools SNP 313888 313888 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1160 SAMTools SNP 313900 313900 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1160 SAMTools SNP 314196 314196 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C3:81 scaffold1160 SAMTools SNP 314207 314207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1160 SAMTools SNP 314728 314728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1160 SAMTools SNP 314752 314752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1160 SAMTools SNP 318143 318143 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1160 SAMTools SNP 318167 318167 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1160 SAMTools SNP 318295 318295 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C69:72 scaffold1160 SAMTools SNP 318654 318654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1160 SAMTools SNP 319161 319161 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.029%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1160 SAMTools SNP 319167 319167 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.47%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1160 SAMTools SNP 319191 319191 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1160 SAMTools SNP 320081 320081 154 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C47%2C29%2C177%2C0%2C174:33 scaffold1160 SAMTools SNP 320352 320352 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1160 SAMTools SNP 320736 320736 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.089%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1160 SAMTools SNP 333980 333980 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold1160 SAMTools SNP 339420 339420 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1160 SAMTools SNP 347666 347666 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1160 SAMTools SNP 347780 347780 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 347792 347792 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.59%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C248:99 scaffold1160 SAMTools SNP 352377 352377 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C43:37 scaffold1160 SAMTools SNP 352384 352384 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1160 SAMTools SNP 352543 352543 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1160 SAMTools SNP 352667 352667 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.27%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1160 SAMTools SNP 354764 354764 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 369478 369478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 369580 369580 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C0.0037%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 372005 372005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1160 SAMTools SNP 374412 374412 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C69%2C0%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 376472 376472 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0049%2C0.17%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1160 SAMTools SNP 379102 379102 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C24%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1160 SAMTools SNP 379294 379294 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C27%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1160 SAMTools SNP 381260 381260 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.68%2C0.42%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1160 SAMTools SNP 381282 381282 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C7:10 scaffold1160 SAMTools SNP 381318 381318 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1160 SAMTools SNP 381512 381512 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1160 SAMTools SNP 381550 381550 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1160 SAMTools SNP 381607 381607 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1160 SAMTools SNP 382594 382594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.68%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1160 SAMTools SNP 382621 382621 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C11%3BMQ%3D46%3BFQ%3D170%3BPV4%3D0.48%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C213:99 scaffold1160 SAMTools SNP 383223 383223 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 384585 384585 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1160 SAMTools SNP 386847 386847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1160 SAMTools SNP 387273 387273 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1160 SAMTools SNP 388247 388247 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1160 SAMTools SNP 389878 389878 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1160 SAMTools SNP 389908 389908 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1160 SAMTools SNP 402248 402248 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1160 SAMTools SNP 402734 402734 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1160 SAMTools SNP 404674 404674 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1160 SAMTools SNP 404808 404808 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1163 SAMTools SNP 1600 1600 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 1630 1630 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 1710 1710 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1163 SAMTools SNP 5072 5072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1163 SAMTools SNP 7845 7845 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1163 SAMTools SNP 7877 7877 18.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1163 SAMTools SNP 57549 57549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1163 SAMTools SNP 58300 58300 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C66:69 scaffold1163 SAMTools SNP 59288 59288 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C0%3BMQ%3D49%3BFQ%3D5.47%3BPV4%3D0.037%2C1.1e-06%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1163 SAMTools SNP 59884 59884 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C238:99 scaffold1163 SAMTools SNP 60490 60490 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1163 SAMTools SNP 60525 60525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1163 SAMTools SNP 61606 61606 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C1%2C7%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1163 SAMTools SNP 61610 61610 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1163 SAMTools SNP 61633 61633 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1163 SAMTools SNP 62525 62525 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1163 SAMTools SNP 63587 63587 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1163 SAMTools SNP 65601 65601 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C72%2C0:99 scaffold1163 SAMTools SNP 65899 65899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 68769 68769 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1163 SAMTools SNP 72699 72699 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1163 SAMTools SNP 73895 73895 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1163 SAMTools SNP 74023 74023 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1163 SAMTools SNP 74264 74264 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1163 SAMTools SNP 76742 76742 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C1%2C4%3BMQ%3D48%3BFQ%3D23%3BPV4%3D0.18%2C0.087%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1163 SAMTools SNP 78375 78375 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C4%3BMQ%3D45%3BFQ%3D63%3BPV4%3D1%2C0.1%2C0.02%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1163 SAMTools SNP 80390 80390 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C13%3BMQ%3D44%3BFQ%3D191%3BPV4%3D1%2C0.35%2C0.23%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1163 SAMTools SNP 80490 80490 83.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D33%3BFQ%3D-31%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C4%2C0:7 scaffold1163 SAMTools SNP 80502 80502 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C1%3BMQ%3D35%3BFQ%3D11.3%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C38:41 scaffold1163 SAMTools SNP 80713 80713 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D0.51%2C0.062%2C0.0063%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1163 SAMTools SNP 81641 81641 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.11%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1163 SAMTools SNP 81657 81657 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1163 SAMTools SNP 81680 81680 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C54%2C0:99 scaffold1163 SAMTools SNP 81698 81698 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C45%2C0:87 scaffold1163 SAMTools SNP 83018 83018 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1163 SAMTools SNP 84338 84338 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 84746 84746 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold1163 SAMTools SNP 85076 85076 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.52%2C0.0054%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1163 SAMTools SNP 87322 87322 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 88791 88791 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 88798 88798 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 88875 88875 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 89659 89659 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1163 SAMTools SNP 89668 89668 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1163 SAMTools SNP 90186 90186 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1163 SAMTools SNP 90998 90998 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C33%2C0:63 scaffold1163 SAMTools SNP 93479 93479 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 113784 113784 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold1163 SAMTools SNP 113826 113826 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C29:32 scaffold1163 SAMTools SNP 113844 113844 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 120128 120128 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1163 SAMTools SNP 121474 121474 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1163 SAMTools SNP 121625 121625 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1163 SAMTools SNP 121680 121680 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1163 SAMTools SNP 121844 121844 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1163 SAMTools SNP 121959 121959 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1163 SAMTools SNP 122282 122282 37.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1163 SAMTools SNP 122307 122307 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C8.8e-10%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C121:53 scaffold1163 SAMTools SNP 123867 123867 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C30%2C0:57 scaffold1163 SAMTools SNP 124693 124693 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.42%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C173:47 scaffold1163 SAMTools SNP 126393 126393 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C1%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.63%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1163 SAMTools SNP 126396 126396 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.021%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1163 SAMTools SNP 126826 126826 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1163 SAMTools SNP 126886 126886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C52%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 127439 127439 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C33%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.17%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 127735 127735 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C48%2C45%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1.1e-08%2C3.7e-38%2C1%2C2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1163 SAMTools SNP 127759 127759 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 128027 128027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C25%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 128167 128167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 128626 128626 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 129223 129223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 129262 129262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 129289 129289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1163 SAMTools SNP 130302 130302 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C28%2C27%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C5.2e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 130567 130567 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C46%2C16%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C0.16%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 134556 134556 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C70%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-06%2C1e-05%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 138003 138003 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1163 SAMTools SNP 138524 138524 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 138999 138999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C11%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1163 SAMTools SNP 141376 141376 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1163 SAMTools SNP 141377 141377 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C10%3BMQ%3D46%3BFQ%3D112%3BPV4%3D0.00022%2C0.0092%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1163 SAMTools SNP 141412 141412 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1163 SAMTools SNP 143209 143209 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1163 SAMTools SNP 143850 143850 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1163 SAMTools SNP 143886 143886 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C148:99 scaffold1163 SAMTools SNP 143901 143901 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.018%2C0.00062%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C234:53 scaffold1163 SAMTools SNP 143903 143903 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C228:99 scaffold1163 SAMTools SNP 148673 148673 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C315%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 151959 151959 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C11%3BMQ%3D49%3BFQ%3D-94%3BPV4%3D1%2C0.44%2C0.44%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold1163 SAMTools SNP 152149 152149 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1163 SAMTools SNP 152241 152241 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C31%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1163 SAMTools SNP 152836 152836 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C183%2C243%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 153041 153041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C103%2C12%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 153465 153465 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D271%2C28%2C182%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D2e-06%2C1%2C1%2C1.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1163 SAMTools SNP 154461 154461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2838%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2730%2C101%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 154518 154518 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2698%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1251%2C4%2C1436%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 154645 154645 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1163 SAMTools SNP 154658 154658 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 155446 155446 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C278%2C11%2C230%3BMQ%3D11%3BFQ%3D51%3BPV4%3D0.086%2C0.0097%2C0.23%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C110:81 scaffold1163 SAMTools SNP 158187 158187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C240%2C20%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 159659 159659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C256%2C40%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 159773 159773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1163 SAMTools SNP 160520 160520 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C102%2C0:99 scaffold1163 SAMTools SNP 161607 161607 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C69%2C0:99 scaffold1163 SAMTools SNP 166578 166578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1163 SAMTools SNP 167288 167288 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C38%2C20%2C32%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C8.8e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1163 SAMTools SNP 167636 167636 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C19%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C243:99 scaffold1163 SAMTools SNP 172818 172818 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1163 SAMTools SNP 173809 173809 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1163 SAMTools SNP 174003 174003 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1163 SAMTools SNP 174042 174042 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1163 SAMTools SNP 175583 175583 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1163 SAMTools SNP 175622 175622 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.067%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold1163 SAMTools SNP 176413 176413 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold1163 SAMTools SNP 176748 176748 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1163 SAMTools SNP 177067 177067 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1163 SAMTools SNP 177113 177113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 177961 177961 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 182911 182911 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold1163 SAMTools SNP 204721 204721 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1163 SAMTools SNP 216141 216141 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C21%2C0:39 scaffold1163 SAMTools SNP 216314 216314 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C4%2C0%3BMQ%3D47%3BFQ%3D17.1%3BPV4%3D0.00055%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1163 SAMTools SNP 216470 216470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C33%2C2%3BMQ%3D49%3BFQ%3D43%3BPV4%3D0.34%2C0.17%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1163 SAMTools SNP 216505 216505 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D9.5e-06%2C7.4e-07%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1163 SAMTools SNP 216517 216517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D46%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1163 SAMTools SNP 216813 216813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D39%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1163 SAMTools SNP 217008 217008 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C9%3BMQ%3D32%3BFQ%3D-13.2%3BPV4%3D0.25%2C0.46%2C0.13%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C14:17 scaffold1163 SAMTools SNP 217040 217040 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold1163 SAMTools SNP 217046 217046 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1163 SAMTools SNP 217131 217131 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1163 SAMTools SNP 217144 217144 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C79:82 scaffold1163 SAMTools SNP 217163 217163 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C0.48%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1163 SAMTools SNP 217845 217845 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold1163 SAMTools SNP 217875 217875 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C116:99 scaffold1163 SAMTools SNP 218090 218090 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold1163 SAMTools SNP 218091 218091 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold1163 SAMTools SNP 218285 218285 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1163 SAMTools SNP 218519 218519 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.33%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1163 SAMTools SNP 218910 218910 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1163 SAMTools SNP 219004 219004 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 221447 221447 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1163 SAMTools SNP 221484 221484 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1163 SAMTools SNP 221516 221516 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 221544 221544 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1163 SAMTools SNP 221711 221711 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1163 SAMTools SNP 221873 221873 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1163 SAMTools SNP 222982 222982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1163 SAMTools SNP 223091 223091 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1163 SAMTools SNP 223112 223112 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 223138 223138 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1163 SAMTools SNP 223400 223400 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold1164 SAMTools SNP 16019 16019 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1164 SAMTools SNP 22901 22901 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C125:37 scaffold1164 SAMTools SNP 24035 24035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 24509 24509 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C10%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.66%2C1%2C0.058%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 28777 28777 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1164 SAMTools SNP 43840 43840 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1164 SAMTools SNP 44427 44427 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1164 SAMTools SNP 44508 44508 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1164 SAMTools SNP 44732 44732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 46285 46285 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1164 SAMTools SNP 46302 46302 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1164 SAMTools SNP 46738 46738 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold1164 SAMTools SNP 46760 46760 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1164 SAMTools SNP 47010 47010 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C177:99 scaffold1164 SAMTools SNP 47505 47505 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 48591 48591 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D46%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C112:85 scaffold1164 SAMTools SNP 51628 51628 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1164 SAMTools SNP 57306 57306 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold1164 SAMTools SNP 57309 57309 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.49%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C140:99 scaffold1164 SAMTools SNP 57994 57994 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1164 SAMTools SNP 58072 58072 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 58108 58108 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 73963 73963 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1164 SAMTools SNP 74103 74103 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1164 SAMTools SNP 97069 97069 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1164 SAMTools SNP 97177 97177 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 97249 97249 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 98502 98502 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1164 SAMTools SNP 99465 99465 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 100756 100756 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1164 SAMTools SNP 100798 100798 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1164 SAMTools SNP 100804 100804 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1164 SAMTools SNP 101158 101158 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1164 SAMTools SNP 101296 101296 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1164 SAMTools SNP 112103 112103 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1164 SAMTools SNP 112550 112550 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1164 SAMTools SNP 113320 113320 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1164 SAMTools SNP 113691 113691 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1164 SAMTools SNP 113715 113715 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1164 SAMTools SNP 114160 114160 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 114162 114162 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 114238 114238 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 114244 114244 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1164 SAMTools SNP 114742 114742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1164 SAMTools SNP 115370 115370 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D38%3BFQ%3D7.8%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C34:37 scaffold1164 SAMTools SNP 115680 115680 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold1164 SAMTools SNP 115749 115749 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold1164 SAMTools SNP 116296 116296 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1164 SAMTools SNP 116315 116315 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1164 SAMTools SNP 119683 119683 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 120005 120005 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C117%2C0:99 scaffold1164 SAMTools SNP 120057 120057 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D0.19%2C2.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C61%2C0:99 scaffold1164 SAMTools SNP 120333 120333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C15%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1164 SAMTools SNP 120618 120618 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1164 SAMTools SNP 120699 120699 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.051%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 121089 121089 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 121185 121185 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1164 SAMTools SNP 121431 121431 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1164 SAMTools SNP 128976 128976 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1164 SAMTools SNP 129168 129168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 130824 130824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1164 SAMTools SNP 130925 130925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 132536 132536 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1164 SAMTools SNP 132565 132565 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.19%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1164 SAMTools SNP 133283 133283 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1164 SAMTools SNP 133297 133297 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 133312 133312 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 133741 133741 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C30%2C0:57 scaffold1164 SAMTools SNP 133798 133798 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.46%2C0.076%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C228:82 scaffold1164 SAMTools SNP 134419 134419 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1164 SAMTools SNP 134612 134612 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C185:99 scaffold1164 SAMTools SNP 135063 135063 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C150:93 scaffold1164 SAMTools SNP 142995 142995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 146658 146658 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 146663 146663 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 149061 149061 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.076%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1164 SAMTools SNP 151547 151547 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.17%2C0.00013%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1164 SAMTools SNP 151571 151571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 154422 154422 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C24%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 157230 157230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C56%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1164 SAMTools SNP 159575 159575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1164 SAMTools SNP 159607 159607 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1164 SAMTools SNP 159625 159625 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C12%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D5.2e-06%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1164 SAMTools SNP 160784 160784 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1164 SAMTools SNP 160790 160790 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C0.4%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1164 SAMTools SNP 160793 160793 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.21%2C0.35%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1164 SAMTools SNP 163819 163819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.035%2C0.08%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1164 SAMTools SNP 163882 163882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C44%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1164 SAMTools SNP 164733 164733 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C11%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1164 SAMTools SNP 165992 165992 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1164 SAMTools SNP 166435 166435 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C15%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1164 SAMTools SNP 166706 166706 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold1164 SAMTools SNP 173778 173778 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C126%2C0:99 scaffold1164 SAMTools SNP 175341 175341 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1164 SAMTools SNP 223199 223199 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 226631 226631 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1164 SAMTools SNP 232923 232923 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C155:63 scaffold1164 SAMTools SNP 232972 232972 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C162:46 scaffold1164 SAMTools SNP 233062 233062 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4e-16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1164 SAMTools SNP 233444 233444 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C123%2C0:99 scaffold1164 SAMTools SNP 234323 234323 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C221%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 234434 234434 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C255%2C0:99 scaffold1164 SAMTools SNP 234446 234446 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1164 SAMTools SNP 234491 234491 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 235292 235292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C22%2C92%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-09%2C0.23%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 235316 235316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C103%2C40%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C5.5e-07%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 235325 235325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C219%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 236233 236233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C4%2C106%2C60%3BMQ%3D50%3BFQ%3D-212%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C0:99 scaffold1164 SAMTools SNP 236242 236242 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C45%2C58%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.37%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 236296 236296 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C56%2C93%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.12%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 236744 236744 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 237306 237306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C69%2C14%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 237442 237442 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C74%2C29%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C2.1e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 237469 237469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C176%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 237681 237681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D701%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C583%2C55%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.088%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1164 SAMTools SNP 237748 237748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1640%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D481%2C292%2C513%2C351%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C4.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 237929 237929 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1632%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D521%2C350%2C475%2C285%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C9.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 238097 238097 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D739%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C310%2C44%2C315%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C2.4e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 238112 238112 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C168%2C43%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 238396 238396 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C158%2C32%2C150%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 239281 239281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C42%2C2%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00086%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 239533 239533 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C57%2C45%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 243391 243391 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1164 SAMTools SNP 243424 243424 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C59:99 scaffold1164 SAMTools SNP 243439 243439 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1164 SAMTools SNP 243886 243886 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.16%2C0.048%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1164 SAMTools SNP 243976 243976 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1164 SAMTools SNP 244006 244006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 244027 244027 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C28%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 244432 244432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C6%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1164 SAMTools SNP 246386 246386 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C36%2C22%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.67%2C6.7e-76%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1164 SAMTools SNP 247162 247162 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C60%2C0:99 scaffold1164 SAMTools SNP 247810 247810 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1164 SAMTools SNP 249487 249487 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 250523 250523 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1164 SAMTools SNP 251027 251027 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D33%2C11%2C17%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.025%2C9.2e-16%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1164 SAMTools SNP 251182 251182 65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C14%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0058%2C7.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C129:98 scaffold1164 SAMTools SNP 251325 251325 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.074%2C3.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1164 SAMTools SNP 251582 251582 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold1164 SAMTools SNP 252800 252800 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 252819 252819 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 252888 252888 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 253047 253047 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1164 SAMTools SNP 253049 253049 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 253089 253089 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 253115 253115 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.0033%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 253639 253639 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1164 SAMTools SNP 254197 254197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1164 SAMTools SNP 254239 254239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1164 SAMTools SNP 254425 254425 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1164 SAMTools SNP 254705 254705 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C204:99 scaffold1164 SAMTools SNP 254729 254729 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C230:99 scaffold1164 SAMTools SNP 254755 254755 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.46%2C0.0057%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C221:69 scaffold1164 SAMTools SNP 254969 254969 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1164 SAMTools SNP 255084 255084 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.33%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1164 SAMTools SNP 255096 255096 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C6%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.67%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1164 SAMTools SNP 255427 255427 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1164 SAMTools SNP 255428 255428 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1164 SAMTools SNP 255973 255973 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.37%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1164 SAMTools SNP 256003 256003 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1164 SAMTools SNP 256015 256015 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1164 SAMTools SNP 256027 256027 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold1164 SAMTools SNP 256435 256435 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C18%2C0:33 scaffold1164 SAMTools SNP 256508 256508 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1164 SAMTools SNP 256543 256543 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.045%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1164 SAMTools SNP 259050 259050 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0034%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold1164 SAMTools SNP 259193 259193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1164 SAMTools SNP 259372 259372 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C12%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.39%2C0.45%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1164 SAMTools SNP 260241 260241 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1164 SAMTools SNP 262610 262610 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1164 SAMTools SNP 262649 262649 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold1164 SAMTools SNP 262739 262739 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 262879 262879 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1164 SAMTools SNP 262957 262957 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1164 SAMTools SNP 263135 263135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 263179 263179 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1164 SAMTools SNP 263204 263204 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D48%3BFQ%3D108%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C220:99 scaffold1164 SAMTools SNP 263778 263778 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C5%3BMQ%3D41%3BFQ%3D83%3BPV4%3D1%2C0.46%2C0.049%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C135:99 scaffold1164 SAMTools SNP 264532 264532 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1164 SAMTools SNP 264728 264728 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1164 SAMTools SNP 264998 264998 22.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold1164 SAMTools SNP 265106 265106 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.1%2C0.0015%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1164 SAMTools SNP 266519 266519 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 267015 267015 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1164 SAMTools SNP 267036 267036 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.43%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1164 SAMTools SNP 272315 272315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1164 SAMTools SNP 272341 272341 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1164 SAMTools SNP 272391 272391 12.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1164 SAMTools SNP 281006 281006 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1164 SAMTools SNP 282884 282884 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C209:99 scaffold1164 SAMTools SNP 283684 283684 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 288705 288705 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.065%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1164 SAMTools SNP 289954 289954 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1164 SAMTools SNP 290419 290419 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1164 SAMTools SNP 290428 290428 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.026%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1164 SAMTools SNP 290821 290821 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1164 SAMTools SNP 291152 291152 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1164 SAMTools SNP 292664 292664 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.44%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C89:39 scaffold1164 SAMTools SNP 292684 292684 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1164 SAMTools SNP 292698 292698 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1164 SAMTools SNP 297866 297866 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1164 SAMTools SNP 297869 297869 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1164 SAMTools SNP 298390 298390 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 298402 298402 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1164 SAMTools SNP 298404 298404 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1164 SAMTools SNP 307517 307517 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1164 SAMTools SNP 307551 307551 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold1164 SAMTools SNP 307928 307928 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1164 SAMTools SNP 321734 321734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1164 SAMTools SNP 322787 322787 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C0.39%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C223:99 scaffold1164 SAMTools SNP 322815 322815 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C76:79 scaffold1164 SAMTools SNP 322859 322859 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C4.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1164 SAMTools SNP 322874 322874 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C10%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.64%2C0.0086%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1164 SAMTools SNP 322928 322928 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold1164 SAMTools SNP 323201 323201 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1164 SAMTools SNP 323237 323237 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1164 SAMTools SNP 323261 323261 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1164 SAMTools SNP 323339 323339 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.054%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C241:99 scaffold1164 SAMTools SNP 323372 323372 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1164 SAMTools SNP 323866 323866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1164 SAMTools SNP 325571 325571 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1164 SAMTools SNP 325715 325715 44 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C178%2C233%2C0%2C212:57 scaffold1164 SAMTools SNP 326035 326035 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00018%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1164 SAMTools SNP 326059 326059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1164 SAMTools SNP 327120 327120 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1164 SAMTools SNP 327168 327168 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1164 SAMTools SNP 327340 327340 55.8 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1164 SAMTools SNP 327349 327349 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1164 SAMTools SNP 328245 328245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1164 SAMTools SNP 331285 331285 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 331290 331290 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 333956 333956 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1164 SAMTools SNP 343694 343694 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1164 SAMTools SNP 343715 343715 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1166 SAMTools SNP 4212 4212 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1166 SAMTools SNP 4249 4249 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1166 SAMTools SNP 5472 5472 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.27%2C0.34%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C110:99 scaffold1166 SAMTools SNP 5476 5476 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1166 SAMTools SNP 6948 6948 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1166 SAMTools SNP 6971 6971 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1166 SAMTools SNP 6986 6986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1166 SAMTools SNP 7925 7925 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1166 SAMTools SNP 8118 8118 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.29%2C2.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C190:99 scaffold1166 SAMTools SNP 8154 8154 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1166 SAMTools SNP 8196 8196 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1166 SAMTools SNP 8604 8604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1166 SAMTools SNP 17171 17171 24.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1166 SAMTools SNP 17986 17986 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1166 SAMTools SNP 18008 18008 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold117 SAMTools SNP 15905 15905 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold117 SAMTools SNP 16356 16356 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold117 SAMTools SNP 16369 16369 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold117 SAMTools SNP 16411 16411 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold117 SAMTools SNP 16450 16450 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C38:41 scaffold117 SAMTools SNP 19126 19126 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold117 SAMTools SNP 37916 37916 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold117 SAMTools SNP 54821 54821 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.011%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C71:74 scaffold117 SAMTools SNP 56700 56700 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold117 SAMTools SNP 57477 57477 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold117 SAMTools SNP 58095 58095 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold117 SAMTools SNP 58214 58214 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.16%3BPV4%3D1%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C32:35 scaffold117 SAMTools SNP 59278 59278 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C139:34 scaffold117 SAMTools SNP 66708 66708 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold117 SAMTools SNP 66712 66712 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C30%2C0:57 scaffold117 SAMTools SNP 66802 66802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold117 SAMTools SNP 70618 70618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold117 SAMTools SNP 76057 76057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 76069 76069 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold117 SAMTools SNP 76114 76114 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C247:99 scaffold117 SAMTools SNP 76814 76814 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 76903 76903 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1.2e-08%2C0.003%2C1%2C5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C203:99 scaffold117 SAMTools SNP 77319 77319 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold117 SAMTools SNP 77367 77367 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold117 SAMTools SNP 77663 77663 62.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold117 SAMTools SNP 78672 78672 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 78681 78681 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold117 SAMTools SNP 78721 78721 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.087%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold117 SAMTools SNP 78810 78810 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C14%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold117 SAMTools SNP 78834 78834 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C47%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold117 SAMTools SNP 79806 79806 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.32%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold117 SAMTools SNP 79864 79864 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C216:99 scaffold117 SAMTools SNP 82253 82253 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold117 SAMTools SNP 82289 82289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold117 SAMTools SNP 82394 82394 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C39%2C0:75 scaffold117 SAMTools SNP 82399 82399 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold117 SAMTools SNP 83551 83551 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold117 SAMTools SNP 83941 83941 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold117 SAMTools SNP 83962 83962 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold117 SAMTools SNP 85799 85799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold117 SAMTools SNP 86222 86222 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold117 SAMTools SNP 86223 86223 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold117 SAMTools SNP 95550 95550 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 95610 95610 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold117 SAMTools SNP 95912 95912 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold117 SAMTools SNP 97548 97548 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C6%2C112%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.37%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 97560 97560 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C8%2C101%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.5%2C1%2C0.33%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 97596 97596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C76%2C35%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 99237 99237 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C131%2C81%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 99489 99489 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C81%2C102%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 99498 99498 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 99528 99528 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C65%2C14%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.077%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 100232 100232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C377%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 100449 100449 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D237%2C45%2C155%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 101184 101184 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C21%2C54%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 101585 101585 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C184%2C60%2C183%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00025%2C1e-248%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold117 SAMTools SNP 102029 102029 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C53%2C108%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 104096 104096 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C10%2C54%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 104130 104130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 104690 104690 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 104862 104862 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 105345 105345 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold117 SAMTools SNP 105360 105360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold117 SAMTools SNP 106784 106784 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold117 SAMTools SNP 106822 106822 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C222%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 113546 113546 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold117 SAMTools SNP 115715 115715 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C63%2C14%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.48%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 116272 116272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C17%2C46%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 116794 116794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 116818 116818 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold117 SAMTools SNP 118704 118704 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold117 SAMTools SNP 118925 118925 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold117 SAMTools SNP 120625 120625 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold117 SAMTools SNP 121542 121542 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 122853 122853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold117 SAMTools SNP 162118 162118 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold117 SAMTools SNP 162120 162120 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold117 SAMTools SNP 165409 165409 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold117 SAMTools SNP 165442 165442 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold117 SAMTools SNP 168866 168866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold117 SAMTools SNP 168893 168893 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold117 SAMTools SNP 168910 168910 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.43%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold117 SAMTools SNP 168914 168914 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold117 SAMTools SNP 169288 169288 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C193:99 scaffold117 SAMTools SNP 169342 169342 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C201:99 scaffold117 SAMTools SNP 169911 169911 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C86:89 scaffold117 SAMTools SNP 170143 170143 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold117 SAMTools SNP 170152 170152 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold117 SAMTools SNP 170381 170381 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C18%2C0:33 scaffold117 SAMTools SNP 192804 192804 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold117 SAMTools SNP 201694 201694 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C8.3e-17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold117 SAMTools SNP 201706 201706 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C39%2C0:75 scaffold117 SAMTools SNP 201772 201772 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold117 SAMTools SNP 202132 202132 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold117 SAMTools SNP 219098 219098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D47%3BPV4%3D8.5e-05%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold117 SAMTools SNP 220148 220148 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C57%2C0:99 scaffold117 SAMTools SNP 234014 234014 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C7.8e-05%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C32:35 scaffold117 SAMTools SNP 237180 237180 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold117 SAMTools SNP 320287 320287 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold117 SAMTools SNP 324129 324129 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.61%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold117 SAMTools SNP 324150 324150 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold117 SAMTools SNP 324946 324946 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C48%2C0:93 scaffold117 SAMTools SNP 325090 325090 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold117 SAMTools SNP 325985 325985 36.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold117 SAMTools SNP 333054 333054 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold117 SAMTools SNP 381266 381266 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold117 SAMTools SNP 382026 382026 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold117 SAMTools SNP 387380 387380 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C232:99 scaffold117 SAMTools SNP 387480 387480 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold117 SAMTools SNP 387548 387548 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.25%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 387753 387753 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C0.46%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold117 SAMTools SNP 387805 387805 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C5.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C166:55 scaffold117 SAMTools SNP 393775 393775 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.47%2C0.0022%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C166:58 scaffold117 SAMTools SNP 393820 393820 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold117 SAMTools SNP 395048 395048 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold117 SAMTools SNP 396610 396610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.16%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 402584 402584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 403056 403056 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.42%2C5.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold117 SAMTools SNP 410408 410408 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.57%2C9.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C215:42 scaffold117 SAMTools SNP 411201 411201 70.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold117 SAMTools SNP 411292 411292 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C7.7e-32%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold117 SAMTools SNP 414860 414860 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C7%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.53%2C3.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold117 SAMTools SNP 419149 419149 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold117 SAMTools SNP 420132 420132 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold117 SAMTools SNP 426396 426396 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold117 SAMTools SNP 426422 426422 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold117 SAMTools SNP 432193 432193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold117 SAMTools SNP 432217 432217 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold117 SAMTools SNP 432226 432226 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C182:74 scaffold117 SAMTools SNP 432562 432562 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold117 SAMTools SNP 432583 432583 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold117 SAMTools SNP 433046 433046 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold117 SAMTools SNP 433168 433168 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold117 SAMTools SNP 465821 465821 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold117 SAMTools SNP 469278 469278 35.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold117 SAMTools SNP 485077 485077 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1172 SAMTools SNP 11728 11728 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1172 SAMTools SNP 11747 11747 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1172 SAMTools SNP 11775 11775 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1172 SAMTools SNP 11843 11843 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1172 SAMTools SNP 13790 13790 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1172 SAMTools SNP 19452 19452 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1172 SAMTools SNP 20261 20261 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold1172 SAMTools SNP 20342 20342 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1172 SAMTools SNP 20900 20900 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C102:99 scaffold1172 SAMTools SNP 20903 20903 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1172 SAMTools SNP 20921 20921 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.035%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C174:99 scaffold1172 SAMTools SNP 21457 21457 193 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.18%2C0.39%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1172 SAMTools SNP 22136 22136 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1172 SAMTools SNP 22748 22748 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C54:57 scaffold1172 SAMTools SNP 22763 22763 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1172 SAMTools SNP 22793 22793 55.8 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1172 SAMTools SNP 23185 23185 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1172 SAMTools SNP 23212 23212 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1172 SAMTools SNP 23226 23226 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1172 SAMTools SNP 23266 23266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1172 SAMTools SNP 23495 23495 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.024%2C0.17%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1172 SAMTools SNP 24074 24074 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C242:99 scaffold1172 SAMTools SNP 24347 24347 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C225:99 scaffold1172 SAMTools SNP 24383 24383 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1172 SAMTools SNP 24401 24401 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1172 SAMTools SNP 25064 25064 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 25067 25067 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 28243 28243 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C57%2C0:99 scaffold1172 SAMTools SNP 32275 32275 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1172 SAMTools SNP 32278 32278 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1172 SAMTools SNP 32308 32308 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1172 SAMTools SNP 33277 33277 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C12:15 scaffold1172 SAMTools SNP 33311 33311 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1172 SAMTools SNP 33375 33375 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C27%2C0:51 scaffold1172 SAMTools SNP 34463 34463 51.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1172 SAMTools SNP 35284 35284 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.4%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C124:65 scaffold1172 SAMTools SNP 35641 35641 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.8e-07%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1172 SAMTools SNP 36060 36060 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1172 SAMTools SNP 36338 36338 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.067%2C9.4e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C74:53 scaffold1172 SAMTools SNP 36436 36436 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1172 SAMTools SNP 37246 37246 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1172 SAMTools SNP 39672 39672 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1172 SAMTools SNP 44669 44669 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1172 SAMTools SNP 44861 44861 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C90%2C0:99 scaffold1172 SAMTools SNP 51268 51268 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold1172 SAMTools SNP 51388 51388 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.053%2C5.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1172 SAMTools SNP 51884 51884 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 51901 51901 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C241:99 scaffold1172 SAMTools SNP 51942 51942 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.35%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C212:99 scaffold1172 SAMTools SNP 54505 54505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1172 SAMTools SNP 54970 54970 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1172 SAMTools SNP 55048 55048 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1172 SAMTools SNP 55054 55054 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1172 SAMTools SNP 55509 55509 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1172 SAMTools SNP 55514 55514 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.2%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1172 SAMTools SNP 55787 55787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1172 SAMTools SNP 55793 55793 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C21%2C0:39 scaffold1172 SAMTools SNP 55868 55868 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1172 SAMTools SNP 56456 56456 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0062%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.057%2C0.29%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1172 SAMTools SNP 56467 56467 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.51%2C0.26%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1172 SAMTools SNP 56470 56470 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.096%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C248:53 scaffold1172 SAMTools SNP 57067 57067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C4%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1172 SAMTools SNP 57545 57545 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C7%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1172 SAMTools SNP 57722 57722 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1172 SAMTools SNP 59920 59920 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1172 SAMTools SNP 61170 61170 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C15%2C0:27 scaffold1172 SAMTools SNP 65188 65188 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1172 SAMTools SNP 65199 65199 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C220:28 scaffold1172 SAMTools SNP 65842 65842 72.5 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C13%2C1%2C99%2C0%2C96:21 scaffold1172 SAMTools SNP 65926 65926 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1172 SAMTools SNP 66278 66278 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1172 SAMTools SNP 66851 66851 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 66883 66883 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 66987 66987 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 67305 67305 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 67956 67956 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 70702 70702 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1172 SAMTools SNP 70726 70726 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 74744 74744 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1172 SAMTools SNP 74849 74849 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold1172 SAMTools SNP 75425 75425 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1172 SAMTools SNP 75446 75446 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1172 SAMTools SNP 75485 75485 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1172 SAMTools SNP 75519 75519 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1172 SAMTools SNP 76036 76036 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C27:30 scaffold1172 SAMTools SNP 79699 79699 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C5.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C136:86 scaffold1172 SAMTools SNP 80331 80331 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1172 SAMTools SNP 80332 80332 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1172 SAMTools SNP 80355 80355 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1172 SAMTools SNP 83500 83500 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C0.43%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C42:45 scaffold1172 SAMTools SNP 83519 83519 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0012%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C76:79 scaffold1172 SAMTools SNP 84639 84639 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1172 SAMTools SNP 84665 84665 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1172 SAMTools SNP 84674 84674 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1172 SAMTools SNP 84744 84744 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1172 SAMTools SNP 84758 84758 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1172 SAMTools SNP 85212 85212 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.61%2C0.46%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C185:99 scaffold1172 SAMTools SNP 85942 85942 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C19%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1172 SAMTools SNP 89418 89418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1172 SAMTools SNP 90169 90169 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1172 SAMTools SNP 90208 90208 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 90244 90244 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 90265 90265 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 91545 91545 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C182:74 scaffold1172 SAMTools SNP 91551 91551 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1172 SAMTools SNP 91912 91912 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1172 SAMTools SNP 91990 91990 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C197:48 scaffold1172 SAMTools SNP 92547 92547 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold1172 SAMTools SNP 92550 92550 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C168:31 scaffold1172 SAMTools SNP 131409 131409 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 131427 131427 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 131715 131715 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1172 SAMTools SNP 131782 131782 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 132305 132305 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 132324 132324 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1172 SAMTools SNP 143426 143426 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C17%2C39%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold1172 SAMTools SNP 143790 143790 26.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1172 SAMTools SNP 144004 144004 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1172 SAMTools SNP 144029 144029 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1172 SAMTools SNP 144321 144321 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1172 SAMTools SNP 144365 144365 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C72%2C0:99 scaffold1172 SAMTools SNP 144413 144413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1173 SAMTools SNP 2911 2911 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C24%2C0:45 scaffold1173 SAMTools SNP 3010 3010 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1173 SAMTools SNP 5204 5204 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1173 SAMTools SNP 5239 5239 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1173 SAMTools SNP 8085 8085 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1173 SAMTools SNP 66362 66362 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1173 SAMTools SNP 66704 66704 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1173 SAMTools SNP 66784 66784 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1173 SAMTools SNP 69545 69545 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1173 SAMTools SNP 73965 73965 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1173 SAMTools SNP 91008 91008 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1174 SAMTools SNP 822 822 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 866 866 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 872 872 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 1430 1430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 3858 3858 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1174 SAMTools SNP 6606 6606 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1174 SAMTools SNP 6885 6885 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 11900 11900 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1174 SAMTools SNP 12030 12030 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1174 SAMTools SNP 12805 12805 47.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold1174 SAMTools SNP 13425 13425 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1174 SAMTools SNP 13456 13456 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C38:41 scaffold1174 SAMTools SNP 13620 13620 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1174 SAMTools SNP 13894 13894 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.21%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C192:79 scaffold1174 SAMTools SNP 15054 15054 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1174 SAMTools SNP 23240 23240 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1174 SAMTools SNP 24237 24237 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1174 SAMTools SNP 24840 24840 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1174 SAMTools SNP 24876 24876 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1174 SAMTools SNP 25826 25826 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 25854 25854 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0073%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1174 SAMTools SNP 26225 26225 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.17%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C232:99 scaffold1174 SAMTools SNP 26247 26247 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1174 SAMTools SNP 34051 34051 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1174 SAMTools SNP 34851 34851 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1174 SAMTools SNP 34898 34898 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 35382 35382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C52%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1174 SAMTools SNP 35416 35416 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1174 SAMTools SNP 36044 36044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 38565 38565 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0013%2C2e-05%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1174 SAMTools SNP 38573 38573 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.032%2C0.0022%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1174 SAMTools SNP 39093 39093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1174 SAMTools SNP 39365 39365 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1174 SAMTools SNP 39952 39952 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1174 SAMTools SNP 40271 40271 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.14%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1174 SAMTools SNP 40993 40993 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1174 SAMTools SNP 42002 42002 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C8%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0042%2C2.3e-05%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1174 SAMTools SNP 42306 42306 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.058%2C1.4e-10%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1174 SAMTools SNP 46613 46613 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C162:31 scaffold1174 SAMTools SNP 46651 46651 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C12:15 scaffold1174 SAMTools SNP 46652 46652 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C12:15 scaffold1174 SAMTools SNP 48137 48137 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1174 SAMTools SNP 55325 55325 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 56403 56403 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1174 SAMTools SNP 56414 56414 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D98%3BPV4%3D2.6e-10%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1174 SAMTools SNP 56429 56429 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C46%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D2.3e-05%2C0.038%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold1174 SAMTools SNP 56501 56501 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1174 SAMTools SNP 56534 56534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1174 SAMTools SNP 56707 56707 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1174 SAMTools SNP 56734 56734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1174 SAMTools SNP 57285 57285 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 57346 57346 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C24%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 57821 57821 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C48%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C17:99 scaffold1174 SAMTools SNP 58886 58886 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 59212 59212 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 59214 59214 53.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1174 SAMTools SNP 59357 59357 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D3.5e-15%2C6.1e-18%2C1%2C1.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1174 SAMTools SNP 59361 59361 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C70%2C55%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.44%2C0.36%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 60649 60649 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1174 SAMTools SNP 60650 60650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1174 SAMTools SNP 61073 61073 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 61143 61143 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C60%2C40%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.031%2C1%2C4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 62316 62316 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 63838 63838 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1174 SAMTools SNP 63931 63931 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C9%2C116%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.2%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 64228 64228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C192%2C24%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 64605 64605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C150%2C53%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 65148 65148 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C45%2C17%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 65502 65502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C72%2C38%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C2.2e-128%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 96556 96556 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1174 SAMTools SNP 137184 137184 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1174 SAMTools SNP 142054 142054 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1174 SAMTools SNP 143271 143271 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C36%2C0:66 scaffold1174 SAMTools SNP 143605 143605 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C214:99 scaffold1174 SAMTools SNP 143672 143672 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1174 SAMTools SNP 144246 144246 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1174 SAMTools SNP 144247 144247 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1174 SAMTools SNP 144639 144639 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1174 SAMTools SNP 155094 155094 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 160727 160727 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C0%3BMQ%3D45%3BFQ%3D70%3BPV4%3D0.063%2C1%2C0.17%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1174 SAMTools SNP 160829 160829 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C6%3BMQ%3D38%3BFQ%3D94%3BPV4%3D0.035%2C0.11%2C0.072%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C189:99 scaffold1174 SAMTools SNP 161288 161288 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.048%2C5.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C153:72 scaffold1174 SAMTools SNP 162284 162284 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1174 SAMTools SNP 162293 162293 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1174 SAMTools SNP 180575 180575 27.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1174 SAMTools SNP 181484 181484 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1174 SAMTools SNP 194557 194557 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1174 SAMTools SNP 194762 194762 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C2%3BMQ%3D48%3BFQ%3D220%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1174 SAMTools SNP 196746 196746 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 196826 196826 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C17%3BMQ%3D48%3BFQ%3D193%3BPV4%3D0.24%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1174 SAMTools SNP 196854 196854 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 197288 197288 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1174 SAMTools SNP 200525 200525 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C60%2C0:99 scaffold1174 SAMTools SNP 219116 219116 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1174 SAMTools SNP 243418 243418 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1174 SAMTools SNP 245389 245389 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1174 SAMTools SNP 245401 245401 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1174 SAMTools SNP 245711 245711 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1174 SAMTools SNP 245975 245975 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1174 SAMTools SNP 246153 246153 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1174 SAMTools SNP 246177 246177 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1174 SAMTools SNP 250747 250747 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1174 SAMTools SNP 250765 250765 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1174 SAMTools SNP 289938 289938 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.24%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C175:44 scaffold1174 SAMTools SNP 290075 290075 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.5e-15%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C132:40 scaffold1174 SAMTools SNP 290151 290151 9.49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1174 SAMTools SNP 305943 305943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 305982 305982 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.17%2C0.2%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1174 SAMTools SNP 305997 305997 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 308852 308852 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1174 SAMTools SNP 311142 311142 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.33%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C165:99 scaffold1174 SAMTools SNP 311283 311283 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1174 SAMTools SNP 311755 311755 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.57%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1174 SAMTools SNP 311791 311791 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1174 SAMTools SNP 312170 312170 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 312191 312191 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1174 SAMTools SNP 313236 313236 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1174 SAMTools SNP 314575 314575 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1174 SAMTools SNP 314581 314581 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1174 SAMTools SNP 314710 314710 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 314917 314917 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1174 SAMTools SNP 314929 314929 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1174 SAMTools SNP 315004 315004 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 330525 330525 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold1174 SAMTools SNP 331384 331384 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold1174 SAMTools SNP 331448 331448 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1174 SAMTools SNP 334189 334189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1174 SAMTools SNP 334354 334354 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 335124 335124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 335774 335774 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 335825 335825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 336019 336019 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1174 SAMTools SNP 338136 338136 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C63%2C0:99 scaffold1174 SAMTools SNP 338258 338258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C58%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1174 SAMTools SNP 338272 338272 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C41%2C14%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1.4e-35%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 338406 338406 84.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold1174 SAMTools SNP 352286 352286 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 352900 352900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1174 SAMTools SNP 353211 353211 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C7:10 scaffold1174 SAMTools SNP 353236 353236 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1174 SAMTools SNP 353718 353718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1174 SAMTools SNP 353849 353849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 353850 353850 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 356287 356287 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C0%2C33%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1174 SAMTools SNP 356314 356314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1174 SAMTools SNP 356358 356358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1174 SAMTools SNP 357426 357426 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1174 SAMTools SNP 357985 357985 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1174 SAMTools SNP 357991 357991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1174 SAMTools SNP 358018 358018 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold1174 SAMTools SNP 358060 358060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 359357 359357 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1174 SAMTools SNP 381003 381003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C5%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1174 SAMTools SNP 381021 381021 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.016%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C235:86 scaffold1174 SAMTools SNP 381599 381599 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C18%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C240:99 scaffold1174 SAMTools SNP 387083 387083 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1174 SAMTools SNP 387104 387104 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold1174 SAMTools SNP 388072 388072 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C96:34 scaffold1174 SAMTools SNP 388075 388075 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1174 SAMTools SNP 388084 388084 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1174 SAMTools SNP 388147 388147 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.051%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1174 SAMTools SNP 389270 389270 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1174 SAMTools SNP 389795 389795 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0039%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1174 SAMTools SNP 390389 390389 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C88:63 scaffold1174 SAMTools SNP 391076 391076 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1174 SAMTools SNP 391139 391139 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 391256 391256 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 391703 391703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C19%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 392999 392999 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C65%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C196%2C0:99 scaffold1174 SAMTools SNP 402142 402142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1174 SAMTools SNP 405870 405870 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.098%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1174 SAMTools SNP 405871 405871 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 407874 407874 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1174 SAMTools SNP 409951 409951 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.35%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C102:99 scaffold1174 SAMTools SNP 409954 409954 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C144:99 scaffold1174 SAMTools SNP 409957 409957 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C173:99 scaffold1174 SAMTools SNP 414555 414555 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.35%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1174 SAMTools SNP 414618 414618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 415149 415149 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1174 SAMTools SNP 415189 415189 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1174 SAMTools SNP 415213 415213 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1174 SAMTools SNP 415379 415379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C6%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1174 SAMTools SNP 416020 416020 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C49%2C0%2C11%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.58%2C0.0011%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1174 SAMTools SNP 416557 416557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1174 SAMTools SNP 416584 416584 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.25%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C237:99 scaffold1174 SAMTools SNP 420364 420364 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1174 SAMTools SNP 420668 420668 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1174 SAMTools SNP 423170 423170 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1174 SAMTools SNP 423531 423531 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1174 SAMTools SNP 424699 424699 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 425814 425814 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1174 SAMTools SNP 426062 426062 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1174 SAMTools SNP 429081 429081 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1174 SAMTools SNP 439151 439151 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1174 SAMTools SNP 439235 439235 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 448367 448367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C277%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 449093 449093 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C284%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 449210 449210 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1174 SAMTools SNP 450783 450783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1174 SAMTools SNP 450897 450897 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 451038 451038 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1174 SAMTools SNP 451152 451152 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1174 SAMTools SNP 451540 451540 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C20%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1174 SAMTools SNP 451586 451586 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1174 SAMTools SNP 451974 451974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 457265 457265 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1174 SAMTools SNP 457895 457895 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C198:43 scaffold1174 SAMTools SNP 458658 458658 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 463767 463767 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C4.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1174 SAMTools SNP 463844 463844 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1174 SAMTools SNP 466640 466640 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1174 SAMTools SNP 466647 466647 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1174 SAMTools SNP 466691 466691 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 466799 466799 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1174 SAMTools SNP 467141 467141 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C114:99 scaffold1174 SAMTools SNP 467207 467207 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1174 SAMTools SNP 468469 468469 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 468486 468486 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 475851 475851 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1174 SAMTools SNP 485871 485871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1174 SAMTools SNP 487063 487063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 487072 487072 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.021%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold1174 SAMTools SNP 488721 488721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1174 SAMTools SNP 488766 488766 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1174 SAMTools SNP 488796 488796 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1174 SAMTools SNP 489484 489484 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C254:99 scaffold1174 SAMTools SNP 489511 489511 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C66:69 scaffold1174 SAMTools SNP 490115 490115 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.4%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1174 SAMTools SNP 492542 492542 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C26%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.011%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1174 SAMTools SNP 493010 493010 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1174 SAMTools SNP 493291 493291 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C20%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.032%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 493384 493384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 494109 494109 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.029%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1174 SAMTools SNP 495302 495302 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C42%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1174 SAMTools SNP 495501 495501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 495549 495549 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold1174 SAMTools SNP 496354 496354 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 496357 496357 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1174 SAMTools SNP 497238 497238 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C35%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 497262 497262 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.00051%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 504988 504988 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C415%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 506352 506352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C146%2C74%2C202%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 506770 506770 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1014%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C446%2C27%2C484%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 506860 506860 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 507264 507264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C128%2C89%2C152%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 507684 507684 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C31%2C48%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 507714 507714 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D880%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D500%2C47%2C272%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C0.23%2C1%2C5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 508303 508303 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1388%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C553%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 508426 508426 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C99%2C83%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 508441 508441 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C53%2C139%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 508898 508898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C137%2C6%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 508931 508931 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1174 SAMTools SNP 509117 509117 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C44%2C0%2C38%3BMQ%3D50%3BFQ%3D179%3BPV4%3D5.1e-08%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1174 SAMTools SNP 509120 509120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C26%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 509126 509126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 515440 515440 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 516309 516309 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C131:99 scaffold1174 SAMTools SNP 516399 516399 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1174 SAMTools SNP 517139 517139 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C10%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.17%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1174 SAMTools SNP 517785 517785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 517807 517807 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.32%2C9.7e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1174 SAMTools SNP 517842 517842 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1174 SAMTools SNP 519453 519453 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1174 SAMTools SNP 519462 519462 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1174 SAMTools SNP 519997 519997 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1174 SAMTools SNP 520063 520063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C31%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1174 SAMTools SNP 522149 522149 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 522155 522155 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 524035 524035 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0221%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.086%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1174 SAMTools SNP 530467 530467 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C48%2C0:93 scaffold1174 SAMTools SNP 533614 533614 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1174 SAMTools SNP 533642 533642 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 536926 536926 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1174 SAMTools SNP 546704 546704 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C10%3BMQ%3D50%3BFQ%3D-159%3BPV4%3D1%2C3.8e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C132%2C0:99 scaffold1174 SAMTools SNP 546779 546779 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D43%2C6%2C7%2C9%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.00085%2C6.9e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1174 SAMTools SNP 546820 546820 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C23%2C10%2C30%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0016%2C7.5e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1174 SAMTools SNP 546920 546920 6.79 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C24%2C38%2C0%2C32:7 scaffold1174 SAMTools SNP 555075 555075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 559905 559905 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 560340 560340 63 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C103%2C52%2C96%2C0%2C78:99 scaffold1174 SAMTools SNP 562126 562126 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C48%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1174 SAMTools SNP 562649 562649 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 563984 563984 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold1174 SAMTools SNP 565074 565074 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1174 SAMTools SNP 566439 566439 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C204:46 scaffold1174 SAMTools SNP 572217 572217 43.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1174 SAMTools SNP 573940 573940 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1174 SAMTools SNP 575351 575351 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C21%2C0:39 scaffold1174 SAMTools SNP 576838 576838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1174 SAMTools SNP 576867 576867 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1174 SAMTools SNP 584936 584936 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1174 SAMTools SNP 585022 585022 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C34%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C175%2C0:99 scaffold1174 SAMTools SNP 585070 585070 47.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1174 SAMTools SNP 585329 585329 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C59%2C62%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D2.3e-06%2C9.3e-145%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1174 SAMTools SNP 585346 585346 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C99%2C3%2C20%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.57%2C4e-23%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1174 SAMTools SNP 585601 585601 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1174 SAMTools SNP 585753 585753 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C8.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C162:69 scaffold1174 SAMTools SNP 586866 586866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 586878 586878 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 586911 586911 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold1174 SAMTools SNP 589562 589562 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1174 SAMTools SNP 590171 590171 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1174 SAMTools SNP 590210 590210 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1174 SAMTools SNP 591797 591797 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1174 SAMTools SNP 593490 593490 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1174 SAMTools SNP 594063 594063 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1174 SAMTools SNP 594614 594614 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1174 SAMTools SNP 594926 594926 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C178%2C0:99 scaffold1174 SAMTools SNP 597180 597180 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C90%2C0:99 scaffold1174 SAMTools SNP 597488 597488 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.1%2C0.0022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C112:61 scaffold1174 SAMTools SNP 598528 598528 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 598548 598548 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 600906 600906 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1174 SAMTools SNP 601884 601884 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1174 SAMTools SNP 602045 602045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1174 SAMTools SNP 602113 602113 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 602116 602116 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 602604 602604 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.079%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C218:99 scaffold1174 SAMTools SNP 606141 606141 44.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1174 SAMTools SNP 606533 606533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.4%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 606802 606802 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D137%3BPV4%3D4.4e-06%2C1.8e-13%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1174 SAMTools SNP 607243 607243 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C22%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1174 SAMTools SNP 607990 607990 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 609234 609234 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 609258 609258 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1174 SAMTools SNP 609261 609261 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1174 SAMTools SNP 609502 609502 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C214:99 scaffold1174 SAMTools SNP 609550 609550 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1174 SAMTools SNP 609988 609988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 612308 612308 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.4%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C158:58 scaffold1174 SAMTools SNP 617112 617112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 617139 617139 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 617256 617256 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1174 SAMTools SNP 618131 618131 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 618139 618139 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1174 SAMTools SNP 619722 619722 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.22%2C0.13%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1174 SAMTools SNP 619947 619947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1174 SAMTools SNP 624141 624141 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 624974 624974 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C16%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1174 SAMTools SNP 624995 624995 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C17%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1174 SAMTools SNP 625213 625213 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C14%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 625749 625749 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C22%2C65%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.26%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 625887 625887 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C47%2C0%2C40%3BMQ%3D50%3BFQ%3D102%3BPV4%3D3.2e-14%2C0.37%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1174 SAMTools SNP 626549 626549 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C18%2C25%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0099%2C0.41%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1174 SAMTools SNP 638845 638845 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 639186 639186 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 639204 639204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1174 SAMTools SNP 640154 640154 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C8%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1174 SAMTools SNP 640184 640184 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.27%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1174 SAMTools SNP 645026 645026 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1174 SAMTools SNP 645487 645487 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1174 SAMTools SNP 647685 647685 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1174 SAMTools SNP 647738 647738 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C90%2C0:99 scaffold1174 SAMTools SNP 649439 649439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 649457 649457 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 649781 649781 19 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1174 SAMTools SNP 649793 649793 49.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1174 SAMTools SNP 649880 649880 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C54%2C0:99 scaffold1174 SAMTools SNP 649994 649994 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C44%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 650003 650003 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 651000 651000 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1174 SAMTools SNP 651601 651601 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 653549 653549 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1174 SAMTools SNP 655805 655805 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1174 SAMTools SNP 658035 658035 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1174 SAMTools SNP 660275 660275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C4e-21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 662836 662836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1174 SAMTools SNP 662875 662875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1174 SAMTools SNP 662980 662980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1174 SAMTools SNP 665516 665516 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1174 SAMTools SNP 665555 665555 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.00045%2C3.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1174 SAMTools SNP 665615 665615 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1174 SAMTools SNP 668507 668507 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0058%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1174 SAMTools SNP 668519 668519 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.19%2C0.018%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C230:98 scaffold1174 SAMTools SNP 668528 668528 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1174 SAMTools SNP 675135 675135 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.081%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold1174 SAMTools SNP 675266 675266 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1174 SAMTools SNP 675419 675419 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1174 SAMTools SNP 675427 675427 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1174 SAMTools SNP 679268 679268 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1174 SAMTools SNP 694716 694716 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1174 SAMTools SNP 698020 698020 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1174 SAMTools SNP 705623 705623 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 707606 707606 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 718246 718246 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1174 SAMTools SNP 720978 720978 7.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1174 SAMTools SNP 738902 738902 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C30%2C57%2C8%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 738920 738920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C17%2C23%2C7%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.8%2C0.089%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 738926 738926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C42%2C64%2C21%3BMQ%3D47%3BFQ%3D225%3BPV4%3D2.9e-06%2C1.1e-12%2C0.099%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 738944 738944 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C2%2C37%3BMQ%3D49%3BFQ%3D193%3BPV4%3D1%2C9.4e-49%2C0.18%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1174 SAMTools SNP 738999 738999 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C85%2C125%2C49%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.4e-09%2C5.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 744273 744273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C260%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 744294 744294 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C48%2C109%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.3%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 744489 744489 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C39%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 746300 746300 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 748001 748001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C26%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1174 SAMTools SNP 748588 748588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 749460 749460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 749592 749592 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C74%2C19%2C14%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1174 SAMTools SNP 749999 749999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C178%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 750142 750142 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C187%2C7%2C23%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0027%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1174 SAMTools SNP 750790 750790 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C9%2C167%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00098%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1174 SAMTools SNP 750817 750817 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C6%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 751464 751464 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 752788 752788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 752815 752815 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1174 SAMTools SNP 752857 752857 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1174 SAMTools SNP 752911 752911 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1174 SAMTools SNP 753528 753528 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1174 SAMTools SNP 753549 753549 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold1174 SAMTools SNP 753939 753939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1174 SAMTools SNP 753990 753990 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 754731 754731 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 754749 754749 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 757166 757166 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 757178 757178 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 763188 763188 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C156:54 scaffold1174 SAMTools SNP 763301 763301 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.43%2C3.3e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C136:90 scaffold1174 SAMTools SNP 766422 766422 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1174 SAMTools SNP 766438 766438 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 768866 768866 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 778842 778842 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.45%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1174 SAMTools SNP 778854 778854 53.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold1174 SAMTools SNP 778912 778912 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1174 SAMTools SNP 779379 779379 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C9.2e-05%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1174 SAMTools SNP 780055 780055 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1174 SAMTools SNP 780555 780555 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 780565 780565 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 783213 783213 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold1174 SAMTools SNP 796931 796931 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1174 SAMTools SNP 801595 801595 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D33%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C222:31 scaffold1174 SAMTools SNP 808670 808670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D210%2C38%2C133%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 808673 808673 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D378%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D205%2C38%2C130%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C0.013%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 809190 809190 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1174 SAMTools SNP 814085 814085 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1174 SAMTools SNP 816430 816430 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1174 SAMTools SNP 824481 824481 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1174 SAMTools SNP 827978 827978 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 828659 828659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 829781 829781 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C22%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1174 SAMTools SNP 834521 834521 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.00078%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C173:99 scaffold1174 SAMTools SNP 841974 841974 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 844661 844661 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C1%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.64%2C1%2C1%2C2.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1174 SAMTools SNP 844875 844875 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold1174 SAMTools SNP 845303 845303 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C36%2C0:69 scaffold1174 SAMTools SNP 845905 845905 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1174 SAMTools SNP 847483 847483 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C36%2C0:69 scaffold1174 SAMTools SNP 848894 848894 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1174 SAMTools SNP 848921 848921 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1174 SAMTools SNP 859425 859425 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1174 SAMTools SNP 859464 859464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1174 SAMTools SNP 859994 859994 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 860299 860299 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 860300 860300 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 860353 860353 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1174 SAMTools SNP 864389 864389 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 864390 864390 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 866542 866542 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1174 SAMTools SNP 866564 866564 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1174 SAMTools SNP 866579 866579 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1174 SAMTools SNP 866618 866618 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 867210 867210 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1174 SAMTools SNP 925297 925297 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C213:60 scaffold1174 SAMTools SNP 936463 936463 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C20:23 scaffold1174 SAMTools SNP 937459 937459 42.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1174 SAMTools SNP 938951 938951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1174 SAMTools SNP 940928 940928 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1174 SAMTools SNP 940939 940939 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C3%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C169%2C0:99 scaffold1174 SAMTools SNP 941461 941461 85.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D656%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C0:39 scaffold1174 SAMTools SNP 956534 956534 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C55%2C3%2C35%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.39%2C1.3e-77%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1174 SAMTools SNP 956603 956603 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.21%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C238:99 scaffold1174 SAMTools SNP 970219 970219 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1174 SAMTools SNP 978654 978654 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1174 SAMTools SNP 978675 978675 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C0:4 scaffold1174 SAMTools SNP 993191 993191 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1174 SAMTools SNP 993219 993219 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1174 SAMTools SNP 994813 994813 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1174 SAMTools SNP 994819 994819 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 994846 994846 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 1000553 1000553 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1174 SAMTools SNP 1035705 1035705 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 1036039 1036039 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1174 SAMTools SNP 1037612 1037612 29.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C2.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C11:14 scaffold1174 SAMTools SNP 1037631 1037631 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold1174 SAMTools SNP 1059582 1059582 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 1059612 1059612 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 1063527 1063527 5.55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C1%2C0:4 scaffold1174 SAMTools SNP 1072197 1072197 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1174 SAMTools SNP 1082282 1082282 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1174 SAMTools SNP 1101293 1101293 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1174 SAMTools SNP 1103478 1103478 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1174 SAMTools SNP 1103664 1103664 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1174 SAMTools SNP 1115562 1115562 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1174 SAMTools SNP 1115661 1115661 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1177 SAMTools SNP 8638 8638 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 8781 8781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 19166 19166 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1177 SAMTools SNP 19619 19619 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold1177 SAMTools SNP 20277 20277 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1177 SAMTools SNP 21425 21425 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 22109 22109 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1177 SAMTools SNP 22157 22157 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1177 SAMTools SNP 22195 22195 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1177 SAMTools SNP 22652 22652 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1177 SAMTools SNP 22702 22702 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1177 SAMTools SNP 24344 24344 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C6%2C0:10 scaffold1177 SAMTools SNP 24416 24416 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C52:55 scaffold1177 SAMTools SNP 24725 24725 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.56%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1177 SAMTools SNP 26887 26887 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1177 SAMTools SNP 26929 26929 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1177 SAMTools SNP 27401 27401 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1177 SAMTools SNP 27970 27970 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 28158 28158 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1177 SAMTools SNP 28230 28230 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C9.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C35:38 scaffold1177 SAMTools SNP 35385 35385 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 36591 36591 22.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C1%2C0:4 scaffold1177 SAMTools SNP 62398 62398 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold1177 SAMTools SNP 62798 62798 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0052%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D23%3BFQ%3D5.02%3BPV4%3D1%2C0.31%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C39:30 scaffold1177 SAMTools SNP 63022 63022 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C2%3BMQ%3D48%3BFQ%3D81%3BPV4%3D0.53%2C0.021%2C0.07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1177 SAMTools SNP 63478 63478 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.24%2C0.031%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C197:99 scaffold1177 SAMTools SNP 63852 63852 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0007%2C0.47%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C228:99 scaffold1177 SAMTools SNP 63860 63860 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1177 SAMTools SNP 63893 63893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1177 SAMTools SNP 64857 64857 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1177 SAMTools SNP 64908 64908 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1177 SAMTools SNP 64926 64926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1177 SAMTools SNP 69622 69622 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.059%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C197:34 scaffold1177 SAMTools SNP 70400 70400 89.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C5%2C0:9 scaffold1177 SAMTools SNP 70436 70436 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1177 SAMTools SNP 70698 70698 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1177 SAMTools SNP 75782 75782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1177 SAMTools SNP 76154 76154 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C122%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1177 SAMTools SNP 76741 76741 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C46%3BMQ%3D48%3BFQ%3D149%3BPV4%3D0.19%2C0.062%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C176:99 scaffold1177 SAMTools SNP 76747 76747 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C1%2C6%3BMQ%3D47%3BFQ%3D55%3BPV4%3D0.11%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C191:85 scaffold1177 SAMTools SNP 77135 77135 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C87%2C0:99 scaffold1177 SAMTools SNP 77633 77633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1177 SAMTools SNP 79189 79189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1177 SAMTools SNP 79231 79231 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C12%2C25%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C0.36%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C17%2C0:31 scaffold1177 SAMTools SNP 79497 79497 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C21%2C8%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.48%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1177 SAMTools SNP 79529 79529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C24%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1177 SAMTools SNP 80662 80662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C17%3BMQ%3D44%3BFQ%3D-119%3BPV4%3D0.38%2C0.24%2C0.3%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C92%2C0:99 scaffold1177 SAMTools SNP 80671 80671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C87%3BMQ%3D47%3BFQ%3D-282%3BPV4%3D1%2C0.27%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1177 SAMTools SNP 81656 81656 82.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C18%2C0:33 scaffold1177 SAMTools SNP 81734 81734 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1177 SAMTools SNP 83425 83425 85.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D33%3BFQ%3D-19%3BPV4%3D1%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C8:11 scaffold1177 SAMTools SNP 83774 83774 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 13339 13339 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 20257 20257 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1179 SAMTools SNP 29558 29558 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C66:69 scaffold1179 SAMTools SNP 29585 29585 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C241:63 scaffold1179 SAMTools SNP 31723 31723 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1179 SAMTools SNP 31743 31743 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1179 SAMTools SNP 58934 58934 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C187:99 scaffold1179 SAMTools SNP 59402 59402 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.38%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1179 SAMTools SNP 59945 59945 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 60256 60256 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1179 SAMTools SNP 60280 60280 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 63084 63084 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1179 SAMTools SNP 63128 63128 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 81061 81061 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 82079 82079 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C205:65 scaffold1179 SAMTools SNP 82344 82344 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1179 SAMTools SNP 84326 84326 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C242:69 scaffold1179 SAMTools SNP 84384 84384 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C0.14%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1179 SAMTools SNP 86679 86679 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1179 SAMTools SNP 86715 86715 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1179 SAMTools SNP 87983 87983 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1179 SAMTools SNP 87989 87989 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.1e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold1179 SAMTools SNP 88088 88088 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C234:99 scaffold1179 SAMTools SNP 88268 88268 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 89714 89714 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 89814 89814 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1179 SAMTools SNP 91904 91904 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 91968 91968 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 93012 93012 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 94285 94285 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1179 SAMTools SNP 99324 99324 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 100153 100153 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 100450 100450 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 100615 100615 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 100634 100634 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 105147 105147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1179 SAMTools SNP 105481 105481 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold1179 SAMTools SNP 108744 108744 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 108780 108780 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 109768 109768 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1179 SAMTools SNP 111032 111032 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold1179 SAMTools SNP 111737 111737 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 113537 113537 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 113976 113976 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 116605 116605 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 119714 119714 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1179 SAMTools SNP 122371 122371 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1179 SAMTools SNP 123680 123680 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 123898 123898 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1179 SAMTools SNP 124074 124074 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1179 SAMTools SNP 124086 124086 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1179 SAMTools SNP 124142 124142 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1179 SAMTools SNP 124146 124146 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1179 SAMTools SNP 124147 124147 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D47.5%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C77:77 scaffold1179 SAMTools SNP 126487 126487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1179 SAMTools SNP 126562 126562 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1179 SAMTools SNP 127069 127069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1179 SAMTools SNP 127127 127127 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C196:99 scaffold1179 SAMTools SNP 128187 128187 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1179 SAMTools SNP 129245 129245 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1179 SAMTools SNP 149826 149826 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.35%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 150166 150166 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1179 SAMTools SNP 150216 150216 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 150231 150231 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1179 SAMTools SNP 150588 150588 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1179 SAMTools SNP 150665 150665 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1179 SAMTools SNP 150666 150666 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.061%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1179 SAMTools SNP 150673 150673 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1179 SAMTools SNP 150679 150679 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C110:99 scaffold1179 SAMTools SNP 151080 151080 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 151717 151717 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C27%2C0:51 scaffold1179 SAMTools SNP 151795 151795 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1179 SAMTools SNP 152081 152081 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 152470 152470 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1179 SAMTools SNP 152477 152477 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1179 SAMTools SNP 152654 152654 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold1179 SAMTools SNP 152696 152696 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C195:99 scaffold1179 SAMTools SNP 152720 152720 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 152729 152729 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C163:99 scaffold1179 SAMTools SNP 152756 152756 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1179 SAMTools SNP 153014 153014 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1179 SAMTools SNP 153020 153020 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1179 SAMTools SNP 153221 153221 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1179 SAMTools SNP 153259 153259 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold1179 SAMTools SNP 153434 153434 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C185:99 scaffold1179 SAMTools SNP 153475 153475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1179 SAMTools SNP 153551 153551 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C21%2C0:39 scaffold1179 SAMTools SNP 153906 153906 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 154018 154018 60.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C94%2C88%2C94%2C0%2C88:10 scaffold1179 SAMTools SNP 154478 154478 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 154787 154787 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1179 SAMTools SNP 156486 156486 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold1179 SAMTools SNP 157692 157692 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 157695 157695 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 157988 157988 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1179 SAMTools SNP 158018 158018 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1179 SAMTools SNP 158274 158274 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 159350 159350 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1179 SAMTools SNP 159370 159370 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1179 SAMTools SNP 159660 159660 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold1179 SAMTools SNP 159688 159688 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1179 SAMTools SNP 159865 159865 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.52%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold1179 SAMTools SNP 159894 159894 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.52%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C178:99 scaffold1179 SAMTools SNP 160209 160209 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1179 SAMTools SNP 161027 161027 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 161101 161101 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1179 SAMTools SNP 161243 161243 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 162454 162454 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 162468 162468 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 163724 163724 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 164103 164103 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 164372 164372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 169075 169075 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1179 SAMTools SNP 169420 169420 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 171006 171006 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold1179 SAMTools SNP 171848 171848 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1179 SAMTools SNP 172923 172923 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.19%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1179 SAMTools SNP 172954 172954 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.55%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C245:99 scaffold1179 SAMTools SNP 173963 173963 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0002%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C77:44 scaffold1179 SAMTools SNP 174799 174799 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C155:99 scaffold1179 SAMTools SNP 175123 175123 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold1179 SAMTools SNP 176359 176359 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.31%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1179 SAMTools SNP 176386 176386 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C216:99 scaffold1179 SAMTools SNP 176660 176660 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1179 SAMTools SNP 176666 176666 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.52%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1179 SAMTools SNP 177093 177093 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.52%2C0.00043%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1179 SAMTools SNP 178875 178875 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C0%2C94%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3.3e-168%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1179 SAMTools SNP 179072 179072 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 179105 179105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C44%2C80%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 179309 179309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C79%2C25%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 179842 179842 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C5%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.013%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 180218 180218 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C62%2C5%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 180248 180248 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C2%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.58%2C0.46%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1179 SAMTools SNP 180250 180250 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1179 SAMTools SNP 180368 180368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1179 SAMTools SNP 180710 180710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1179 SAMTools SNP 181111 181111 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1179 SAMTools SNP 181222 181222 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.52%2C0.025%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1179 SAMTools SNP 181225 181225 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.53%2C0.0044%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1179 SAMTools SNP 182059 182059 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1179 SAMTools SNP 182784 182784 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 182832 182832 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 182871 182871 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C11%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.29%2C1.5e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1179 SAMTools SNP 183174 183174 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C189:69 scaffold1179 SAMTools SNP 183192 183192 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1179 SAMTools SNP 183237 183237 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 183258 183258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 184164 184164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1179 SAMTools SNP 184167 184167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1179 SAMTools SNP 184248 184248 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.63%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C184:99 scaffold1179 SAMTools SNP 184497 184497 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 184605 184605 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 184692 184692 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold1179 SAMTools SNP 184693 184693 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C247:99 scaffold1179 SAMTools SNP 185160 185160 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C54%2C0%2C29%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1179 SAMTools SNP 185310 185310 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 185313 185313 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 185334 185334 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1179 SAMTools SNP 185358 185358 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1179 SAMTools SNP 186167 186167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.021%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 186188 186188 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.051%2C1.2e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C215:79 scaffold1179 SAMTools SNP 186215 186215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1179 SAMTools SNP 186248 186248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1179 SAMTools SNP 186731 186731 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.038%2C0.19%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1179 SAMTools SNP 190839 190839 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1179 SAMTools SNP 191968 191968 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1179 SAMTools SNP 192118 192118 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1179 SAMTools SNP 192145 192145 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C18%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D9e-05%2C6.1e-05%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1179 SAMTools SNP 192146 192146 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C12%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.0011%2C3.7e-05%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1179 SAMTools SNP 192373 192373 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C2%2C9%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1179 SAMTools SNP 200028 200028 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C225:47 scaffold1179 SAMTools SNP 208585 208585 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 208664 208664 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 222514 222514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1179 SAMTools SNP 222535 222535 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1179 SAMTools SNP 223411 223411 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold1179 SAMTools SNP 223416 223416 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1179 SAMTools SNP 223443 223443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1179 SAMTools SNP 223768 223768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1179 SAMTools SNP 223816 223816 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1179 SAMTools SNP 226725 226725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 229288 229288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1179 SAMTools SNP 229350 229350 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D45%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C51%2C0:99 scaffold1179 SAMTools SNP 229667 229667 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D40%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C189:48 scaffold1179 SAMTools SNP 229955 229955 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C0%3BMQ%3D46%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C205:99 scaffold1179 SAMTools SNP 232109 232109 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D35%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C48%2C0:93 scaffold1179 SAMTools SNP 232720 232720 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D9%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C99%2C0:99 scaffold1179 SAMTools SNP 234260 234260 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1179 SAMTools SNP 235158 235158 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1179 SAMTools SNP 236305 236305 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C30%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C3.2e-23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1179 SAMTools SNP 236314 236314 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C27%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.2e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C251:52 scaffold1179 SAMTools SNP 236471 236471 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C148%2C0:99 scaffold1179 SAMTools SNP 236662 236662 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0083%2C1.8e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C230:36 scaffold1179 SAMTools SNP 239922 239922 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D99%2C1%2C75%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.1e-203%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1179 SAMTools SNP 239988 239988 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0015%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C53:56 scaffold1179 SAMTools SNP 240316 240316 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C63%2C0:99 scaffold1179 SAMTools SNP 240474 240474 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.7e-09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C223:70 scaffold1179 SAMTools SNP 241110 241110 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C72%2C0:99 scaffold1179 SAMTools SNP 241408 241408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1179 SAMTools SNP 241858 241858 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1179 SAMTools SNP 242258 242258 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C68%2C22%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 243444 243444 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1179 SAMTools SNP 243857 243857 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.08%2C8.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C200:55 scaffold1179 SAMTools SNP 244444 244444 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C45%2C24%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 244480 244480 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C3%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0053%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C227:99 scaffold1179 SAMTools SNP 244507 244507 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C29%2C12%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D2.4e-06%2C1.2e-26%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1179 SAMTools SNP 244513 244513 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C22%2C9%2C24%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0011%2C1.4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1179 SAMTools SNP 244585 244585 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1179 SAMTools SNP 244612 244612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1179 SAMTools SNP 244979 244979 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C251:88 scaffold1179 SAMTools SNP 245385 245385 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1179 SAMTools SNP 245415 245415 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C15%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.13%2C2.5e-08%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1179 SAMTools SNP 245421 245421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C11%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1179 SAMTools SNP 245553 245553 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 245562 245562 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C27:69 scaffold1179 SAMTools SNP 245583 245583 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.17%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 245802 245802 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C25%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1179 SAMTools SNP 246720 246720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 247028 247028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C22%2C54%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 248452 248452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1179 SAMTools SNP 248476 248476 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 249020 249020 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.094%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 249750 249750 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C111%2C169%2C70%3BMQ%3D47%3BFQ%3D225%3BPV4%3D7.4e-10%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 250711 250711 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 264949 264949 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C150%2C1%2C68%3BMQ%3D50%3BFQ%3D41%3BPV4%3D8.5e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1179 SAMTools SNP 270462 270462 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1179 SAMTools SNP 273024 273024 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 273032 273032 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 273311 273311 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 275699 275699 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 275700 275700 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 276529 276529 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1179 SAMTools SNP 278888 278888 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1179 SAMTools SNP 279384 279384 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1179 SAMTools SNP 279397 279397 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold1179 SAMTools SNP 280090 280090 53.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1179 SAMTools SNP 280769 280769 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 280800 280800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1179 SAMTools SNP 281815 281815 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1179 SAMTools SNP 281846 281846 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C27%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1.4e-39%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1179 SAMTools SNP 281932 281932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1179 SAMTools SNP 283260 283260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C11%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1179 SAMTools SNP 283952 283952 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1179 SAMTools SNP 284211 284211 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1179 SAMTools SNP 284247 284247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1179 SAMTools SNP 284292 284292 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1179 SAMTools SNP 286527 286527 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C0.28%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold1179 SAMTools SNP 286555 286555 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.2%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C231:52 scaffold1179 SAMTools SNP 287329 287329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C156%2C43%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C2.7e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 288640 288640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.31%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 288646 288646 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 288694 288694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1179 SAMTools SNP 289452 289452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1179 SAMTools SNP 289518 289518 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 289938 289938 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 290088 290088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0092%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 290597 290597 18.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold1179 SAMTools SNP 292745 292745 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 294629 294629 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1179 SAMTools SNP 296509 296509 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1179 SAMTools SNP 314824 314824 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 315457 315457 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C178:99 scaffold1179 SAMTools SNP 315541 315541 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C8.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1179 SAMTools SNP 317398 317398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1179 SAMTools SNP 317428 317428 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1179 SAMTools SNP 317449 317449 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 319380 319380 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C238:99 scaffold1179 SAMTools SNP 319388 319388 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.56%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C216:99 scaffold1179 SAMTools SNP 320485 320485 13 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C26%2C20%2C43%2C0%2C40:9 scaffold1179 SAMTools SNP 325695 325695 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1179 SAMTools SNP 325733 325733 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1179 SAMTools SNP 325734 325734 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1179 SAMTools SNP 332563 332563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 332612 332612 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 333118 333118 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 333139 333139 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1179 SAMTools SNP 334516 334516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 351313 351313 52.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C1%2C0:4 scaffold1179 SAMTools SNP 352082 352082 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1179 SAMTools SNP 353732 353732 59.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold1179 SAMTools SNP 353810 353810 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1179 SAMTools SNP 356335 356335 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1179 SAMTools SNP 362149 362149 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C4%2C67%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 365527 365527 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C28%2C82%2C15%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.015%2C0.00022%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 365539 365539 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C37%2C28%2C52%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.1%2C0.025%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 369394 369394 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1179 SAMTools SNP 372559 372559 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1179 SAMTools SNP 374080 374080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 376530 376530 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C7%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C7.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C160:92 scaffold1179 SAMTools SNP 377332 377332 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold1179 SAMTools SNP 378711 378711 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C245:99 scaffold1179 SAMTools SNP 380221 380221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1179 SAMTools SNP 380497 380497 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1179 SAMTools SNP 380515 380515 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 380596 380596 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1179 SAMTools SNP 380977 380977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 381311 381311 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C80%2C104%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 381648 381648 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C35%2C40%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 381711 381711 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 382960 382960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1179 SAMTools SNP 382977 382977 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1179 SAMTools SNP 385526 385526 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1179 SAMTools SNP 386927 386927 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1179 SAMTools SNP 387278 387278 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1179 SAMTools SNP 387309 387309 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1179 SAMTools SNP 388245 388245 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 388362 388362 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C16%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C102%2C0:99 scaffold1179 SAMTools SNP 390194 390194 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1179 SAMTools SNP 390206 390206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D153%3BPV4%3D3.8e-06%2C0.071%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1179 SAMTools SNP 390215 390215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1179 SAMTools SNP 390706 390706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C20%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1179 SAMTools SNP 390728 390728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1179 SAMTools SNP 390752 390752 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1179 SAMTools SNP 390785 390785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1179 SAMTools SNP 392253 392253 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 392317 392317 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1179 SAMTools SNP 392880 392880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1179 SAMTools SNP 392921 392921 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold1179 SAMTools SNP 393199 393199 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 393247 393247 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 393394 393394 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1179 SAMTools SNP 393720 393720 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 393743 393743 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 393999 393999 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 413621 413621 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 413630 413630 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 413870 413870 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 437706 437706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 437770 437770 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 437793 437793 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 437796 437796 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold1179 SAMTools SNP 438023 438023 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1179 SAMTools SNP 446241 446241 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1179 SAMTools SNP 448725 448725 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1179 SAMTools SNP 449049 449049 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1179 SAMTools SNP 449095 449095 222 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0%2C254%2C38%2C251:99 scaffold1179 SAMTools SNP 452144 452144 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C7.4e-11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C172:41 scaffold1179 SAMTools SNP 452799 452799 99.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.23%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C12:15 scaffold1179 SAMTools SNP 453164 453164 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.047%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1179 SAMTools SNP 453467 453467 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1179 SAMTools SNP 453488 453488 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1179 SAMTools SNP 453732 453732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1179 SAMTools SNP 461085 461085 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold1179 SAMTools SNP 461422 461422 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1179 SAMTools SNP 461439 461439 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 461670 461670 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1179 SAMTools SNP 461679 461679 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1179 SAMTools SNP 462449 462449 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1179 SAMTools SNP 462464 462464 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 463675 463675 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 468492 468492 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1179 SAMTools SNP 468686 468686 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold1179 SAMTools SNP 469471 469471 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C6.6e-07%2C1%2C6.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C240:49 scaffold1179 SAMTools SNP 469939 469939 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C60%2C0:91 scaffold1179 SAMTools SNP 471519 471519 26.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1179 SAMTools SNP 471759 471759 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.1%2C1.8e-06%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold1179 SAMTools SNP 472466 472466 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C54:57 scaffold1179 SAMTools SNP 484503 484503 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C96%2C0:99 scaffold1179 SAMTools SNP 485482 485482 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1179 SAMTools SNP 487714 487714 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C1%2C27%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.49%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1179 SAMTools SNP 487716 487716 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C29%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1179 SAMTools SNP 487723 487723 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C56%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1179 SAMTools SNP 487998 487998 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C52%2C20%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.3e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C52:55 scaffold1179 SAMTools SNP 488376 488376 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1179 SAMTools SNP 488506 488506 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C3.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1179 SAMTools SNP 488684 488684 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C16%3BMQ%3D50%3BFQ%3D62.8%3BPV4%3D1%2C1.2e-20%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C103:93 scaffold1179 SAMTools SNP 488779 488779 27.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1179 SAMTools SNP 488861 488861 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold1179 SAMTools SNP 489175 489175 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1179 SAMTools SNP 491562 491562 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C4%2C8%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.48%2C4.6e-17%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1179 SAMTools SNP 491577 491577 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C12%2C8%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.11%2C1.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1179 SAMTools SNP 491933 491933 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1179 SAMTools SNP 491972 491972 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C12%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.72%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1179 SAMTools SNP 492012 492012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C3.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 492156 492156 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C17%2C11%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.4e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1179 SAMTools SNP 492235 492235 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C14%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C6.1e-16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1179 SAMTools SNP 492358 492358 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.026%2C6.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1179 SAMTools SNP 492464 492464 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1179 SAMTools SNP 492753 492753 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1179 SAMTools SNP 493126 493126 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C37%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1179 SAMTools SNP 493164 493164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C35%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1179 SAMTools SNP 493405 493405 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 493420 493420 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C218:99 scaffold1179 SAMTools SNP 500796 500796 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C74%2C37%2C0%3BMQ%3D30%3BFQ%3D80%3BPV4%3D2.1e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C107:99 scaffold1179 SAMTools SNP 502556 502556 4.12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D3%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C138%2C0:39 scaffold1179 SAMTools SNP 504175 504175 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C27%2C38%3BMQ%3D41%3BFQ%3D182%3BPV4%3D1.2e-13%2C1.7e-21%2C1.3e-15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1179 SAMTools SNP 504208 504208 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C38%2C19%2C0%3BMQ%3D41%3BFQ%3D61%3BPV4%3D0.00029%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C170:91 scaffold1179 SAMTools SNP 504270 504270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C52%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 504697 504697 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C196%2C0:99 scaffold1179 SAMTools SNP 504827 504827 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1179 SAMTools SNP 504977 504977 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C90%2C0:99 scaffold1179 SAMTools SNP 505825 505825 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1179 SAMTools SNP 513811 513811 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1179 SAMTools SNP 513846 513846 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 514182 514182 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.0011%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1179 SAMTools SNP 514612 514612 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C38%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1179 SAMTools SNP 515001 515001 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C9%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 515483 515483 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 515786 515786 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C15%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1179 SAMTools SNP 515862 515862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C31%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1179 SAMTools SNP 516331 516331 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.55%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1179 SAMTools SNP 516345 516345 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1179 SAMTools SNP 516354 516354 97.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C15%2C0:27 scaffold1179 SAMTools SNP 516504 516504 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1179 SAMTools SNP 517253 517253 13.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold1179 SAMTools SNP 517325 517325 17.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1179 SAMTools SNP 517506 517506 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 517638 517638 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 518292 518292 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 518704 518704 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1179 SAMTools SNP 518799 518799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C53%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1179 SAMTools SNP 519028 519028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 519421 519421 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 519855 519855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 519861 519861 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 520304 520304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 520325 520325 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C63%2C0%2C22%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1179 SAMTools SNP 520335 520335 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C62%2C0%2C22%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1179 SAMTools SNP 520866 520866 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.6%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1179 SAMTools SNP 521113 521113 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C4.3e-05%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1179 SAMTools SNP 522147 522147 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.051%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1179 SAMTools SNP 522163 522163 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1179 SAMTools SNP 523083 523083 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 523381 523381 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1179 SAMTools SNP 523420 523420 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1179 SAMTools SNP 524084 524084 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 524268 524268 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 524570 524570 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 525325 525325 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 525326 525326 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 525545 525545 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 525666 525666 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 525696 525696 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 526125 526125 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 526517 526517 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1179 SAMTools SNP 526571 526571 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 528368 528368 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.015%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1179 SAMTools SNP 528541 528541 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1179 SAMTools SNP 528557 528557 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.021%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 529550 529550 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C235:99 scaffold1179 SAMTools SNP 529574 529574 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C9.9e-37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C245:47 scaffold1179 SAMTools SNP 565309 565309 9.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1179 SAMTools SNP 568992 568992 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1179 SAMTools SNP 568998 568998 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C39%2C0:75 scaffold1179 SAMTools SNP 569066 569066 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1179 SAMTools SNP 569724 569724 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 569742 569742 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.18%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C166:39 scaffold1179 SAMTools SNP 569775 569775 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C5.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold1179 SAMTools SNP 570534 570534 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 570678 570678 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C225:85 scaffold1179 SAMTools SNP 581305 581305 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1179 SAMTools SNP 581312 581312 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C254:57 scaffold1179 SAMTools SNP 581430 581430 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1179 SAMTools SNP 581437 581437 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 581466 581466 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1179 SAMTools SNP 586929 586929 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 586983 586983 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 587384 587384 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1179 SAMTools SNP 596056 596056 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 596272 596272 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1179 SAMTools SNP 596287 596287 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1179 SAMTools SNP 596550 596550 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1179 SAMTools SNP 596645 596645 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1179 SAMTools SNP 597606 597606 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0053%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1179 SAMTools SNP 597610 597610 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0076%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1179 SAMTools SNP 597641 597641 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1179 SAMTools SNP 597765 597765 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1179 SAMTools SNP 597772 597772 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1179 SAMTools SNP 599088 599088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C6%2C98%3BMQ%3D48%3BFQ%3D-256%3BPV4%3D1%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1179 SAMTools SNP 599106 599106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D45%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1179 SAMTools SNP 599276 599276 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 615060 615060 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1179 SAMTools SNP 615255 615255 6.95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1179 SAMTools SNP 625237 625237 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C4.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C208:59 scaffold1179 SAMTools SNP 625383 625383 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C60%2C0:78 scaffold1179 SAMTools SNP 625671 625671 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 625813 625813 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C51%2C0:99 scaffold1179 SAMTools SNP 626120 626120 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C55%2C1%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 626150 626150 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C52%2C0%2C37%3BMQ%3D50%3BFQ%3D25%3BPV4%3D2.8e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1179 SAMTools SNP 626524 626524 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C112%2C9%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 626997 626997 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C191:39 scaffold1179 SAMTools SNP 627103 627103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1179 SAMTools SNP 627481 627481 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C47%2C76%2C51%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 628479 628479 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C9%2C32%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 628935 628935 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 628941 628941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 630727 630727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1179 SAMTools SNP 631096 631096 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C23%2C37%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 631141 631141 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C50%2C19%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 631629 631629 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00078%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1179 SAMTools SNP 632030 632030 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 634470 634470 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold1179 SAMTools SNP 634578 634578 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1179 SAMTools SNP 641464 641464 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 641625 641625 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1179 SAMTools SNP 641688 641688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1179 SAMTools SNP 643214 643214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1179 SAMTools SNP 643232 643232 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1179 SAMTools SNP 649901 649901 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1179 SAMTools SNP 651888 651888 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.048%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1179 SAMTools SNP 651898 651898 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1179 SAMTools SNP 672278 672278 48.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1179 SAMTools SNP 672287 672287 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1179 SAMTools SNP 687429 687429 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1179 SAMTools SNP 689121 689121 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 691649 691649 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 787649 787649 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 869071 869071 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1179 SAMTools SNP 921971 921971 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1179 SAMTools SNP 933702 933702 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1179 SAMTools SNP 941826 941826 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D3%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C48%2C0:36 scaffold1179 SAMTools SNP 941947 941947 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D3%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C51%2C0:36 scaffold1179 SAMTools SNP 958393 958393 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C51%2C0:99 scaffold1179 SAMTools SNP 962501 962501 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1179 SAMTools SNP 989290 989290 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1003720 1003720 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1179 SAMTools SNP 1005200 1005200 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.6%2C0.49%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1179 SAMTools SNP 1005787 1005787 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1179 SAMTools SNP 1005790 1005790 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 1005812 1005812 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 1006137 1006137 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 1006523 1006523 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1179 SAMTools SNP 1007281 1007281 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1007566 1007566 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1179 SAMTools SNP 1008040 1008040 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C110:92 scaffold1179 SAMTools SNP 1008088 1008088 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1179 SAMTools SNP 1008555 1008555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1179 SAMTools SNP 1008786 1008786 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1179 SAMTools SNP 1009173 1009173 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1179 SAMTools SNP 1009272 1009272 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.057%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1179 SAMTools SNP 1009507 1009507 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.63%2C0.43%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1179 SAMTools SNP 1009546 1009546 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C226:99 scaffold1179 SAMTools SNP 1009947 1009947 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold1179 SAMTools SNP 1010444 1010444 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1179 SAMTools SNP 1010446 1010446 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1179 SAMTools SNP 1010763 1010763 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1179 SAMTools SNP 1011916 1011916 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1012066 1012066 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1014803 1014803 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1179 SAMTools SNP 1014859 1014859 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C249:99 scaffold1179 SAMTools SNP 1016072 1016072 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 1016523 1016523 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1025215 1025215 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C12%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1179 SAMTools SNP 1025241 1025241 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.16%2C0.0028%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1179 SAMTools SNP 1025243 1025243 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C27%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.31%2C0.017%2C1%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1179 SAMTools SNP 1036302 1036302 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 1036566 1036566 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1179 SAMTools SNP 1039713 1039713 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1179 SAMTools SNP 1040368 1040368 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1179 SAMTools SNP 1042781 1042781 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1179 SAMTools SNP 1042891 1042891 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1179 SAMTools SNP 1043930 1043930 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1044022 1044022 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold1179 SAMTools SNP 1044610 1044610 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1179 SAMTools SNP 1045741 1045741 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1179 SAMTools SNP 1052228 1052228 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1179 SAMTools SNP 1063720 1063720 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1065610 1065610 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1065983 1065983 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1179 SAMTools SNP 1066006 1066006 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1179 SAMTools SNP 1074338 1074338 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1074353 1074353 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 1074547 1074547 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1179 SAMTools SNP 1074569 1074569 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 1075361 1075361 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1075416 1075416 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1085812 1085812 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1179 SAMTools SNP 1087013 1087013 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1179 SAMTools SNP 1087430 1087430 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1179 SAMTools SNP 1087701 1087701 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C18%2C0:33 scaffold1179 SAMTools SNP 1088495 1088495 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1179 SAMTools SNP 1092773 1092773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C112%2C51%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1179 SAMTools SNP 1095687 1095687 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.18%2C0.073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1179 SAMTools SNP 1096136 1096136 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1179 SAMTools SNP 1096162 1096162 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1179 SAMTools SNP 1096176 1096176 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1179 SAMTools SNP 1096194 1096194 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C9%2C10%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.39%2C0.025%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1179 SAMTools SNP 1096198 1096198 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C17%2C11%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1179 SAMTools SNP 1096624 1096624 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C46%2C40%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1096947 1096947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1097353 1097353 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.11%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1179 SAMTools SNP 1099533 1099533 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C54%2C0:99 scaffold1179 SAMTools SNP 1099587 1099587 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C62%2C11%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.5e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1100418 1100418 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1179 SAMTools SNP 1101262 1101262 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1179 SAMTools SNP 1101424 1101424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1101580 1101580 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C31%2C8%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1101597 1101597 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C2.4e-07%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1101741 1101741 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C16%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C241%2C0:99 scaffold1179 SAMTools SNP 1101972 1101972 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1179 SAMTools SNP 1102002 1102002 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1179 SAMTools SNP 1103216 1103216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1103330 1103330 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C61%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1179 SAMTools SNP 1103625 1103625 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1179 SAMTools SNP 1103669 1103669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1179 SAMTools SNP 1103931 1103931 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1179 SAMTools SNP 1104051 1104051 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1104075 1104075 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1179 SAMTools SNP 1106019 1106019 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C2%2C37%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1179 SAMTools SNP 1106085 1106085 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C56%2C51%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D0.062%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold1179 SAMTools SNP 1106735 1106735 12 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C24%2C18%2C42%2C0%2C39:9 scaffold1179 SAMTools SNP 1108800 1108800 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1179 SAMTools SNP 1113250 1113250 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C21%2C30%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1114714 1114714 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1114907 1114907 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1115003 1115003 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C20%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.092%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1118993 1118993 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1179 SAMTools SNP 1119116 1119116 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C200:99 scaffold1179 SAMTools SNP 1119635 1119635 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.64%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1179 SAMTools SNP 1119668 1119668 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C130:99 scaffold1179 SAMTools SNP 1121161 1121161 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1179 SAMTools SNP 1122885 1122885 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.082%2C8.6e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1179 SAMTools SNP 1123128 1123128 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C10%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.39%2C0.0028%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1179 SAMTools SNP 1123142 1123142 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D34%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.32%2C0.00029%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1179 SAMTools SNP 1123257 1123257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C16%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1179 SAMTools SNP 1124133 1124133 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C46%2C142%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1124214 1124214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1124274 1124274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1124310 1124310 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1124650 1124650 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C77%2C28%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1124863 1124863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1179 SAMTools SNP 1129271 1129271 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1179 SAMTools SNP 1129297 1129297 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D48%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1179 SAMTools SNP 1129361 1129361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C14%2C78%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1130735 1130735 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0077%2C6.2e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1179 SAMTools SNP 1131290 1131290 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C50%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1131575 1131575 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C3%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.21%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1132194 1132194 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C2%2C50%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1132312 1132312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C53%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1132396 1132396 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C0%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1132659 1132659 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C12%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1133111 1133111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1133192 1133192 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C21%2C23%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1134439 1134439 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C29%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1135979 1135979 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C26%2C71%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1136048 1136048 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D571%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1179 SAMTools SNP 1146891 1146891 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C55%3BMQ%3D49%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1179 SAMTools SNP 1147804 1147804 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1179 SAMTools SNP 1147846 1147846 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1179 SAMTools SNP 1152511 1152511 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1153092 1153092 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1179 SAMTools SNP 1153334 1153334 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1179 SAMTools SNP 1154637 1154637 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1179 SAMTools SNP 1159621 1159621 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1179 SAMTools SNP 1159642 1159642 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1179 SAMTools SNP 1160373 1160373 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1179 SAMTools SNP 1160442 1160442 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.26%2C3.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1179 SAMTools SNP 1160634 1160634 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C1%2C15%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.22%2C5.9e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1179 SAMTools SNP 1167102 1167102 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C9%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.013%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1179 SAMTools SNP 1167121 1167121 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C9%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.097%2C1.6e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1179 SAMTools SNP 1167464 1167464 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1179 SAMTools SNP 1168409 1168409 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1168489 1168489 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C9%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.019%2C0.0022%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C240:99 scaffold1179 SAMTools SNP 1168525 1168525 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.011%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1179 SAMTools SNP 1169317 1169317 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1179 SAMTools SNP 1169380 1169380 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.32%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1179 SAMTools SNP 1169388 1169388 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1179 SAMTools SNP 1172912 1172912 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1179 SAMTools SNP 1173402 1173402 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.45%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1179 SAMTools SNP 1173427 1173427 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 1173719 1173719 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 1175176 1175176 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1179 SAMTools SNP 1180625 1180625 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.076%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1179 SAMTools SNP 1180638 1180638 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1179 SAMTools SNP 1180966 1180966 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 1180970 1180970 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 1182822 1182822 70.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold1179 SAMTools SNP 1183308 1183308 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1179 SAMTools SNP 1183383 1183383 64.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1179 SAMTools SNP 1183527 1183527 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1179 SAMTools SNP 1183995 1183995 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.12%2C1.5e-17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1179 SAMTools SNP 1186212 1186212 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.58%2C0.041%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1179 SAMTools SNP 1187101 1187101 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1179 SAMTools SNP 1187200 1187200 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1179 SAMTools SNP 1187215 1187215 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1179 SAMTools SNP 1187749 1187749 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.39%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1179 SAMTools SNP 1187852 1187852 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1179 SAMTools SNP 1187869 1187869 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1179 SAMTools SNP 1187902 1187902 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1179 SAMTools SNP 1190763 1190763 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C66%2C0:99 scaffold1179 SAMTools SNP 1191184 1191184 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 1193302 1193302 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1179 SAMTools SNP 1193424 1193424 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 1193899 1193899 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1179 SAMTools SNP 1194453 1194453 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 1194975 1194975 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 1195294 1195294 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1179 SAMTools SNP 1195601 1195601 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C197:99 scaffold1179 SAMTools SNP 1195951 1195951 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C3:6 scaffold1179 SAMTools SNP 1197208 1197208 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1179 SAMTools SNP 1198195 1198195 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1179 SAMTools SNP 1198617 1198617 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1179 SAMTools SNP 1198730 1198730 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1179 SAMTools SNP 1198744 1198744 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1201681 1201681 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1179 SAMTools SNP 1242837 1242837 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1179 SAMTools SNP 1242909 1242909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1179 SAMTools SNP 1242917 1242917 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1179 SAMTools SNP 1243794 1243794 28.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1179 SAMTools SNP 1243797 1243797 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1179 SAMTools SNP 1243944 1243944 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C32%2C49%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1244174 1244174 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C65%2C2%2C28%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.15%2C0.31%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1179 SAMTools SNP 1244222 1244222 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1244675 1244675 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1179 SAMTools SNP 1244738 1244738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1179 SAMTools SNP 1245868 1245868 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1179 SAMTools SNP 1246182 1246182 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1179 SAMTools SNP 1246183 1246183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1179 SAMTools SNP 1246221 1246221 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.018%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1179 SAMTools SNP 1246273 1246273 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C4%2C56%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.15%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1179 SAMTools SNP 1246288 1246288 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1179 SAMTools SNP 1246553 1246553 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1247124 1247124 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1179 SAMTools SNP 1247705 1247705 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D32.8%3BPV4%3D1%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C66:63 scaffold1179 SAMTools SNP 1248322 1248322 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1179 SAMTools SNP 1248504 1248504 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.32%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1248531 1248531 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C39%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1248555 1248555 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1248560 1248560 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C38%2C4%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1250464 1250464 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C12%2C51%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C8.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1255425 1255425 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1179 SAMTools SNP 1256975 1256975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C66%3BMQ%3D49%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1179 SAMTools SNP 1256989 1256989 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C6%2C29%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.25%2C0.078%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1261474 1261474 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1179 SAMTools SNP 1273277 1273277 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 1276251 1276251 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1179 SAMTools SNP 1278097 1278097 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1283427 1283427 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1179 SAMTools SNP 1283493 1283493 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C48%2C0:93 scaffold1179 SAMTools SNP 1283595 1283595 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1283610 1283610 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 1284075 1284075 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1286833 1286833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1287953 1287953 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C14%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1179 SAMTools SNP 1288031 1288031 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C21%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.49%2C4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1179 SAMTools SNP 1292553 1292553 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1179 SAMTools SNP 1294406 1294406 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1179 SAMTools SNP 1294429 1294429 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1179 SAMTools SNP 1294442 1294442 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1179 SAMTools SNP 1294445 1294445 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1179 SAMTools SNP 1295220 1295220 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.59%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C218:99 scaffold1179 SAMTools SNP 1299655 1299655 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1179 SAMTools SNP 1304050 1304050 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C119:99 scaffold1179 SAMTools SNP 1304390 1304390 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C8.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1179 SAMTools SNP 1305261 1305261 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C29:32 scaffold1179 SAMTools SNP 1325220 1325220 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1179 SAMTools SNP 1325816 1325816 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C4.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C134:41 scaffold1179 SAMTools SNP 1325930 1325930 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C5.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C221:99 scaffold1179 SAMTools SNP 1325978 1325978 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1179 SAMTools SNP 1325993 1325993 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold1179 SAMTools SNP 1326041 1326041 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.02%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C88:43 scaffold1179 SAMTools SNP 1326057 1326057 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1179 SAMTools SNP 1330298 1330298 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1179 SAMTools SNP 1330313 1330313 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1179 SAMTools SNP 1331717 1331717 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1179 SAMTools SNP 1334654 1334654 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1179 SAMTools SNP 1335619 1335619 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C140:99 scaffold1179 SAMTools SNP 1339433 1339433 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C110%2C115%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-27%2C1%2C1%2C4.8e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1179 SAMTools SNP 1339881 1339881 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C102%2C4%2C44%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1.1e-05%2C4.3e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1179 SAMTools SNP 1349381 1349381 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1179 SAMTools SNP 1349771 1349771 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 1349943 1349943 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1179 SAMTools SNP 1349959 1349959 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold118 SAMTools SNP 4674 4674 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold118 SAMTools SNP 4683 4683 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold118 SAMTools SNP 5010 5010 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold118 SAMTools SNP 5527 5527 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold118 SAMTools SNP 5958 5958 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C145:99 scaffold118 SAMTools SNP 6103 6103 63.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C6%2C0:10 scaffold118 SAMTools SNP 6665 6665 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold118 SAMTools SNP 6684 6684 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold118 SAMTools SNP 6727 6727 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold118 SAMTools SNP 6762 6762 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C212:99 scaffold118 SAMTools SNP 7074 7074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C0.32%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold118 SAMTools SNP 7494 7494 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C233:71 scaffold118 SAMTools SNP 10598 10598 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold118 SAMTools SNP 10627 10627 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold118 SAMTools SNP 10698 10698 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C0.39%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold118 SAMTools SNP 11382 11382 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.17%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold118 SAMTools SNP 11384 11384 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold118 SAMTools SNP 11774 11774 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold118 SAMTools SNP 11783 11783 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold118 SAMTools SNP 11885 11885 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.54%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold118 SAMTools SNP 11906 11906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.0094%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold118 SAMTools SNP 13039 13039 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.58%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C195:99 scaffold118 SAMTools SNP 13057 13057 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C0.37%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold118 SAMTools SNP 14513 14513 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold118 SAMTools SNP 14576 14576 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold118 SAMTools SNP 15032 15032 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C150:47 scaffold118 SAMTools SNP 15042 15042 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C122:87 scaffold118 SAMTools SNP 31095 31095 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold118 SAMTools SNP 41251 41251 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold118 SAMTools SNP 65521 65521 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold118 SAMTools SNP 65533 65533 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C199:63 scaffold118 SAMTools SNP 65536 65536 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold118 SAMTools SNP 65623 65623 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C36%2C0:69 scaffold118 SAMTools SNP 68901 68901 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold118 SAMTools SNP 68907 68907 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold118 SAMTools SNP 68935 68935 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold118 SAMTools SNP 77893 77893 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C75%2C0:99 scaffold1180 SAMTools SNP 6179 6179 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1180 SAMTools SNP 6244 6244 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1180 SAMTools SNP 30556 30556 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1180 SAMTools SNP 47196 47196 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1180 SAMTools SNP 49605 49605 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1180 SAMTools SNP 49651 49651 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1180 SAMTools SNP 50698 50698 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 50891 50891 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1180 SAMTools SNP 51834 51834 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C56:59 scaffold1180 SAMTools SNP 51840 51840 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21.9%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C65:52 scaffold1180 SAMTools SNP 53055 53055 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold1180 SAMTools SNP 53063 53063 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold1180 SAMTools SNP 53399 53399 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D34.2%3BPV4%3D0.036%2C8.2e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C69:64 scaffold1180 SAMTools SNP 53471 53471 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D0.29%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1180 SAMTools SNP 53603 53603 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1180 SAMTools SNP 53878 53878 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C11%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0085%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1180 SAMTools SNP 54476 54476 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1180 SAMTools SNP 54514 54514 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.47%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 54663 54663 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1180 SAMTools SNP 54705 54705 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.00076%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1180 SAMTools SNP 55698 55698 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.52%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1180 SAMTools SNP 55722 55722 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1180 SAMTools SNP 55725 55725 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.063%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1180 SAMTools SNP 56063 56063 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.51%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold1180 SAMTools SNP 56703 56703 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C242:40 scaffold1180 SAMTools SNP 57150 57150 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.018%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C127:99 scaffold1180 SAMTools SNP 57165 57165 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C235:99 scaffold1180 SAMTools SNP 57192 57192 119 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C103%2C252%2C0%2C234:99 scaffold1180 SAMTools SNP 58112 58112 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.57%3BPV4%3D1%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C26:29 scaffold1180 SAMTools SNP 58121 58121 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C26:29 scaffold1180 SAMTools SNP 58786 58786 67.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1180 SAMTools SNP 59043 59043 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.16%2C6.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C180:89 scaffold1180 SAMTools SNP 60018 60018 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1180 SAMTools SNP 60151 60151 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold1180 SAMTools SNP 61060 61060 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1180 SAMTools SNP 61187 61187 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1180 SAMTools SNP 67605 67605 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.42%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1180 SAMTools SNP 67606 67606 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C187:99 scaffold1180 SAMTools SNP 67610 67610 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C5%2C0%3BMQ%3D43%3BFQ%3D58%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C207:88 scaffold1180 SAMTools SNP 68104 68104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1180 SAMTools SNP 68309 68309 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C5%3BMQ%3D49%3BFQ%3D46%3BPV4%3D1%2C1%2C0.0077%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C230:76 scaffold1180 SAMTools SNP 69726 69726 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C112:63 scaffold1180 SAMTools SNP 78733 78733 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D47%3BFQ%3D114%3BPV4%3D1%2C1%2C0.33%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold1180 SAMTools SNP 79264 79264 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C188:99 scaffold1180 SAMTools SNP 79647 79647 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 79683 79683 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 81301 81301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1180 SAMTools SNP 81808 81808 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.57%2C0.026%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1180 SAMTools SNP 81862 81862 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1180 SAMTools SNP 81940 81940 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1180 SAMTools SNP 82000 82000 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 82141 82141 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1180 SAMTools SNP 82855 82855 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1180 SAMTools SNP 82872 82872 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold1180 SAMTools SNP 83182 83182 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1180 SAMTools SNP 83248 83248 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C1.7e-06%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1180 SAMTools SNP 83553 83553 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1180 SAMTools SNP 83571 83571 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1180 SAMTools SNP 83601 83601 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1180 SAMTools SNP 84277 84277 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.44%2C0.00052%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C156:67 scaffold1180 SAMTools SNP 84298 84298 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C24%2C0:45 scaffold1180 SAMTools SNP 84325 84325 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold1180 SAMTools SNP 84654 84654 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1180 SAMTools SNP 84748 84748 59.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1180 SAMTools SNP 87489 87489 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold1180 SAMTools SNP 87498 87498 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C0.34%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C35:38 scaffold1180 SAMTools SNP 87945 87945 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1180 SAMTools SNP 87972 87972 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1180 SAMTools SNP 88282 88282 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1180 SAMTools SNP 88539 88539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1180 SAMTools SNP 88667 88667 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C2%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.037%2C3.1e-20%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1180 SAMTools SNP 89090 89090 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold1180 SAMTools SNP 89096 89096 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold1180 SAMTools SNP 89111 89111 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C160:99 scaffold1180 SAMTools SNP 89131 89131 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1180 SAMTools SNP 89390 89390 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1180 SAMTools SNP 89621 89621 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C216:99 scaffold1180 SAMTools SNP 89655 89655 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1180 SAMTools SNP 89847 89847 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C23%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C155:99 scaffold1180 SAMTools SNP 89862 89862 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C0%2C23%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0002%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1180 SAMTools SNP 90507 90507 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.18%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1180 SAMTools SNP 90516 90516 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C12%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.18%2C0.0066%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1180 SAMTools SNP 90805 90805 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 90829 90829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C45%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1180 SAMTools SNP 91046 91046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1180 SAMTools SNP 91112 91112 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0076%2C0.17%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1180 SAMTools SNP 91115 91115 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0076%2C0.18%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1180 SAMTools SNP 91754 91754 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1180 SAMTools SNP 92097 92097 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.053%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1180 SAMTools SNP 92115 92115 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1180 SAMTools SNP 92552 92552 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1180 SAMTools SNP 92585 92585 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.18%2C0.2%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1180 SAMTools SNP 92785 92785 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C237:99 scaffold1180 SAMTools SNP 92818 92818 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.15%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1180 SAMTools SNP 92824 92824 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.48%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1180 SAMTools SNP 93018 93018 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1180 SAMTools SNP 93043 93043 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1180 SAMTools SNP 93123 93123 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1180 SAMTools SNP 93562 93562 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1180 SAMTools SNP 93970 93970 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1180 SAMTools SNP 93972 93972 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1180 SAMTools SNP 93996 93996 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1180 SAMTools SNP 94138 94138 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1180 SAMTools SNP 94186 94186 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1180 SAMTools SNP 94549 94549 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1180 SAMTools SNP 94552 94552 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1180 SAMTools SNP 95738 95738 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C36%2C0:68 scaffold1180 SAMTools SNP 95783 95783 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C245:52 scaffold1180 SAMTools SNP 95930 95930 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C11%2C16%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.78%2C1.1e-25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1180 SAMTools SNP 96086 96086 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.57%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C138:65 scaffold1180 SAMTools SNP 96308 96308 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1180 SAMTools SNP 96329 96329 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1180 SAMTools SNP 96725 96725 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1180 SAMTools SNP 109690 109690 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1180 SAMTools SNP 109730 109730 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1180 SAMTools SNP 119221 119221 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1180 SAMTools SNP 119253 119253 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1180 SAMTools SNP 120021 120021 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1180 SAMTools SNP 120224 120224 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1180 SAMTools SNP 120233 120233 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1181 SAMTools SNP 37954 37954 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1181 SAMTools SNP 42172 42172 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1181 SAMTools SNP 61914 61914 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1181 SAMTools SNP 68172 68172 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1181 SAMTools SNP 68314 68314 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1181 SAMTools SNP 68373 68373 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold1181 SAMTools SNP 68493 68493 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1181 SAMTools SNP 83804 83804 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1181 SAMTools SNP 102178 102178 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1181 SAMTools SNP 113399 113399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1181 SAMTools SNP 113628 113628 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C177%2C14%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D0.62%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1181 SAMTools SNP 113640 113640 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C1%2C180%2C16%3BMQ%3D50%3BFQ%3D-163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C136%2C0:99 scaffold1181 SAMTools SNP 114072 114072 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C68%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1181 SAMTools SNP 114075 114075 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1182 SAMTools SNP 2956 2956 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1182 SAMTools SNP 8178 8178 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1182 SAMTools SNP 8348 8348 8.22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1182 SAMTools SNP 9335 9335 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1182 SAMTools SNP 12079 12079 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1182 SAMTools SNP 12094 12094 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1182 SAMTools SNP 12095 12095 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1182 SAMTools SNP 12102 12102 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1182 SAMTools SNP 12393 12393 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1182 SAMTools SNP 13480 13480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1182 SAMTools SNP 22745 22745 4.13 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1182 SAMTools SNP 24786 24786 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1182 SAMTools SNP 24793 24793 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1182 SAMTools SNP 25225 25225 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1182 SAMTools SNP 25247 25247 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1182 SAMTools SNP 27863 27863 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C36%2C0:69 scaffold1182 SAMTools SNP 29192 29192 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1182 SAMTools SNP 29264 29264 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C54%2C0:99 scaffold1182 SAMTools SNP 29282 29282 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.45%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C165:68 scaffold1182 SAMTools SNP 29300 29300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1182 SAMTools SNP 29330 29330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1182 SAMTools SNP 30470 30470 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold1182 SAMTools SNP 30482 30482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1182 SAMTools SNP 30554 30554 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1182 SAMTools SNP 30581 30581 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1182 SAMTools SNP 31537 31537 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D112%3BPV4%3D0.35%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C197:99 scaffold1182 SAMTools SNP 31579 31579 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.2%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1182 SAMTools SNP 31585 31585 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1182 SAMTools SNP 31615 31615 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C30%2C0:57 scaffold1185 SAMTools SNP 3974 3974 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 4256 4256 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 4415 4415 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C25:28 scaffold1185 SAMTools SNP 4629 4629 51.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold1185 SAMTools SNP 5152 5152 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 8942 8942 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C8%2C214%2C101%3BMQ%3D49%3BFQ%3D112%3BPV4%3D9.2e-06%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold1185 SAMTools SNP 9248 9248 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C105%2C5%2C245%3BMQ%3D48%3BFQ%3D147%3BPV4%3D0.33%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1185 SAMTools SNP 9308 9308 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C76%2C0%2C17%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C4.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C220:99 scaffold1185 SAMTools SNP 33131 33131 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 41455 41455 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 56463 56463 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1185 SAMTools SNP 57428 57428 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1185 SAMTools SNP 58223 58223 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1185 SAMTools SNP 58419 58419 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C6.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 58551 58551 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1185 SAMTools SNP 58554 58554 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1185 SAMTools SNP 59747 59747 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1185 SAMTools SNP 59756 59756 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.14%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C193:99 scaffold1185 SAMTools SNP 59798 59798 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1185 SAMTools SNP 59852 59852 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1185 SAMTools SNP 60396 60396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C4%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 60914 60914 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C13%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 61143 61143 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1185 SAMTools SNP 61158 61158 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1185 SAMTools SNP 69934 69934 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 79981 79981 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1185 SAMTools SNP 81837 81837 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1185 SAMTools SNP 82536 82536 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1185 SAMTools SNP 82757 82757 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 84338 84338 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.37%2C2.4e-05%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C149:68 scaffold1185 SAMTools SNP 86771 86771 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1185 SAMTools SNP 86777 86777 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.54%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1185 SAMTools SNP 88871 88871 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1185 SAMTools SNP 89873 89873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C13%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.14%2C0.14%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1185 SAMTools SNP 89894 89894 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold1185 SAMTools SNP 89920 89920 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1185 SAMTools SNP 91081 91081 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1185 SAMTools SNP 91148 91148 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.059%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1185 SAMTools SNP 92477 92477 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1185 SAMTools SNP 93192 93192 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.13%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1185 SAMTools SNP 93562 93562 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-05%2C0.49%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 93795 93795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1185 SAMTools SNP 93878 93878 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1185 SAMTools SNP 98654 98654 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1185 SAMTools SNP 99035 99035 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C66:69 scaffold1185 SAMTools SNP 99122 99122 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1185 SAMTools SNP 99532 99532 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0034%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C181:93 scaffold1185 SAMTools SNP 99594 99594 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1185 SAMTools SNP 100315 100315 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1185 SAMTools SNP 100677 100677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1185 SAMTools SNP 102227 102227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1185 SAMTools SNP 102268 102268 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1185 SAMTools SNP 104301 104301 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C7%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1185 SAMTools SNP 104963 104963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1185 SAMTools SNP 104974 104974 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1185 SAMTools SNP 107111 107111 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1185 SAMTools SNP 107141 107141 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 108449 108449 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1185 SAMTools SNP 109606 109606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1185 SAMTools SNP 127102 127102 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.37%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1185 SAMTools SNP 127899 127899 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1185 SAMTools SNP 131737 131737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C35%2C29%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 132046 132046 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1185 SAMTools SNP 133071 133071 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1185 SAMTools SNP 133175 133175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1185 SAMTools SNP 133833 133833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1185 SAMTools SNP 135226 135226 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C29%2C119%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C255%2C0:99 scaffold1185 SAMTools SNP 138801 138801 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 138840 138840 189 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C1%2C9%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1185 SAMTools SNP 138966 138966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C35%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1185 SAMTools SNP 140367 140367 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C108%2C3%2C23%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.12%2C2.6e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1185 SAMTools SNP 140429 140429 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C35%2C109%2C16%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.03%2C2.3e-176%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1185 SAMTools SNP 143717 143717 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C29%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C6.8e-13%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C40%2C0:69 scaffold1186 SAMTools SNP 41712 41712 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1186 SAMTools SNP 81630 81630 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1186 SAMTools SNP 131197 131197 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C24:27 scaffold1186 SAMTools SNP 132062 132062 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1186 SAMTools SNP 139078 139078 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1186 SAMTools SNP 139453 139453 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1186 SAMTools SNP 163097 163097 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1186 SAMTools SNP 164137 164137 44.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1186 SAMTools SNP 164884 164884 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C126%2C0:99 scaffold1186 SAMTools SNP 164911 164911 28.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1186 SAMTools SNP 200316 200316 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1186 SAMTools SNP 263730 263730 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1186 SAMTools SNP 263915 263915 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1186 SAMTools SNP 263936 263936 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1186 SAMTools SNP 264227 264227 96.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold1187 SAMTools SNP 12392 12392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1187 SAMTools SNP 12480 12480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1187 SAMTools SNP 21167 21167 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold1187 SAMTools SNP 22707 22707 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1187 SAMTools SNP 23048 23048 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1187 SAMTools SNP 24170 24170 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C36%2C0:69 scaffold1187 SAMTools SNP 24315 24315 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C71:74 scaffold1187 SAMTools SNP 28855 28855 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C59%2C0%2C21%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.01%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1187 SAMTools SNP 29797 29797 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.083%2C2.1e-07%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1187 SAMTools SNP 29799 29799 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.16%2C2.4e-05%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1187 SAMTools SNP 30879 30879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1187 SAMTools SNP 30930 30930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C12%2C62%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1187 SAMTools SNP 31590 31590 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1187 SAMTools SNP 32197 32197 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C52%2C36%2C23%3BMQ%3D48%3BFQ%3D225%3BPV4%3D7.2e-05%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1187 SAMTools SNP 32814 32814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C41%3BMQ%3D42%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1187 SAMTools SNP 32841 32841 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C33%3BMQ%3D43%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1187 SAMTools SNP 32855 32855 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C0%2C12%3BMQ%3D49%3BFQ%3D126%3BPV4%3D0.1%2C0.12%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1187 SAMTools SNP 33294 33294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C82%3BMQ%3D39%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1187 SAMTools SNP 34151 34151 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1187 SAMTools SNP 34163 34163 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1187 SAMTools SNP 39467 39467 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C117%2C0:99 scaffold1188 SAMTools SNP 2985 2985 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 3036 3036 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 19836 19836 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 19867 19867 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1188 SAMTools SNP 31044 31044 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1188 SAMTools SNP 31114 31114 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1188 SAMTools SNP 33191 33191 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1188 SAMTools SNP 33211 33211 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1188 SAMTools SNP 33257 33257 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 33312 33312 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 35826 35826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 36724 36724 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.24%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1188 SAMTools SNP 36750 36750 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1188 SAMTools SNP 37235 37235 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C4%2C59%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.37%2C1.8e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1188 SAMTools SNP 37291 37291 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C44%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 37848 37848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C70%2C96%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1188 SAMTools SNP 37863 37863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C60%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1188 SAMTools SNP 38000 38000 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1188 SAMTools SNP 39523 39523 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1188 SAMTools SNP 41072 41072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C56%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1188 SAMTools SNP 41090 41090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C48%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1188 SAMTools SNP 58850 58850 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1188 SAMTools SNP 61858 61858 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 62343 62343 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1188 SAMTools SNP 64848 64848 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1188 SAMTools SNP 65104 65104 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1188 SAMTools SNP 65531 65531 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1188 SAMTools SNP 79743 79743 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold1188 SAMTools SNP 80895 80895 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1188 SAMTools SNP 110123 110123 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 112135 112135 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 112539 112539 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 112564 112564 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 162083 162083 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1188 SAMTools SNP 164260 164260 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 165943 165943 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 171076 171076 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.031%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C26:29 scaffold1188 SAMTools SNP 171196 171196 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.25%2C2.9e-10%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C76:47 scaffold1188 SAMTools SNP 172952 172952 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C9.8e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold1188 SAMTools SNP 175788 175788 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C88:46 scaffold1188 SAMTools SNP 177078 177078 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1188 SAMTools SNP 201616 201616 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1188 SAMTools SNP 205898 205898 51.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1188 SAMTools SNP 205950 205950 34.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1188 SAMTools SNP 207982 207982 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C12%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.49%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C147:99 scaffold1188 SAMTools SNP 208371 208371 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D90.6%3BPV4%3D0.23%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C118:99 scaffold1188 SAMTools SNP 216228 216228 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1188 SAMTools SNP 230964 230964 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1188 SAMTools SNP 231169 231169 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1188 SAMTools SNP 231479 231479 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1188 SAMTools SNP 234369 234369 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1188 SAMTools SNP 236015 236015 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 248430 248430 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1188 SAMTools SNP 287711 287711 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 323390 323390 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1188 SAMTools SNP 323412 323412 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.029%2C0.13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold1188 SAMTools SNP 323591 323591 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1188 SAMTools SNP 323947 323947 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C51%2C0:99 scaffold1188 SAMTools SNP 324302 324302 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1188 SAMTools SNP 324480 324480 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 324496 324496 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 328297 328297 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C77:30 scaffold1188 SAMTools SNP 328613 328613 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1188 SAMTools SNP 328727 328727 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C57%2C0:99 scaffold1188 SAMTools SNP 328917 328917 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1188 SAMTools SNP 388466 388466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C47%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1188 SAMTools SNP 388620 388620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C11%2C30%3BMQ%3D47%3BFQ%3D30%3BPV4%3D0.32%2C0.24%2C0.19%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1188 SAMTools SNP 388671 388671 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D40%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1188 SAMTools SNP 389065 389065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D37%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1188 SAMTools SNP 389107 389107 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D37%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C45%2C0:87 scaffold1188 SAMTools SNP 389305 389305 51.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1188 SAMTools SNP 389315 389315 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1188 SAMTools SNP 389924 389924 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1188 SAMTools SNP 390227 390227 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 390590 390590 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 390665 390665 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1188 SAMTools SNP 391648 391648 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 392388 392388 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 394341 394341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1188 SAMTools SNP 398045 398045 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1188 SAMTools SNP 404983 404983 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1188 SAMTools SNP 405890 405890 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 406323 406323 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1188 SAMTools SNP 406328 406328 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 406338 406338 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1188 SAMTools SNP 406468 406468 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.037%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1188 SAMTools SNP 406513 406513 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1188 SAMTools SNP 409727 409727 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D48%3BFQ%3D10.4%3BPV4%3D1%2C0.072%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1188 SAMTools SNP 414185 414185 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 425147 425147 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 429322 429322 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1188 SAMTools SNP 429382 429382 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1188 SAMTools SNP 429738 429738 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 429850 429850 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 436851 436851 25.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1188 SAMTools SNP 437275 437275 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C194:51 scaffold1188 SAMTools SNP 438062 438062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C10%3BMQ%3D41%3BFQ%3D93%3BPV4%3D0.15%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold1188 SAMTools SNP 438724 438724 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1188 SAMTools SNP 438745 438745 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1188 SAMTools SNP 439759 439759 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C32:35 scaffold1188 SAMTools SNP 439801 439801 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 439949 439949 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1188 SAMTools SNP 439964 439964 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1188 SAMTools SNP 440014 440014 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1188 SAMTools SNP 440126 440126 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 441440 441440 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C180:99 scaffold1188 SAMTools SNP 441468 441468 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1188 SAMTools SNP 441520 441520 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.04%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C99:49 scaffold1188 SAMTools SNP 442140 442140 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 458614 458614 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C60%2C0:99 scaffold1188 SAMTools SNP 459026 459026 22.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1188 SAMTools SNP 460424 460424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C12%2C53%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 460794 460794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C43%2C10%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 461495 461495 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 461645 461645 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C29%2C4%2C6%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.51%2C0.0025%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1188 SAMTools SNP 461683 461683 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80.9%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C112:99 scaffold1188 SAMTools SNP 462760 462760 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1188 SAMTools SNP 464307 464307 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D20%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C69:50 scaffold1188 SAMTools SNP 468220 468220 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C48%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.047%2C5.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1188 SAMTools SNP 472257 472257 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1188 SAMTools SNP 472259 472259 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1188 SAMTools SNP 472875 472875 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C14%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0022%2C0.0014%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1188 SAMTools SNP 472885 472885 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0022%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1188 SAMTools SNP 472920 472920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 472957 472957 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 474037 474037 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1188 SAMTools SNP 476754 476754 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1188 SAMTools SNP 476826 476826 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 478965 478965 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1188 SAMTools SNP 480459 480459 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.6%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1188 SAMTools SNP 480561 480561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C11%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1188 SAMTools SNP 481737 481737 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.067%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 482394 482394 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1188 SAMTools SNP 482461 482461 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 487013 487013 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1188 SAMTools SNP 488988 488988 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1188 SAMTools SNP 490334 490334 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1188 SAMTools SNP 499257 499257 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1188 SAMTools SNP 505288 505288 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1188 SAMTools SNP 529879 529879 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 529890 529890 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 530083 530083 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 530087 530087 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 534069 534069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 534101 534101 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 536790 536790 95 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1188 SAMTools SNP 537237 537237 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C2%3BMQ%3D48%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1188 SAMTools SNP 540674 540674 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C36%3BMQ%3D49%3BFQ%3D97%3BPV4%3D0.0014%2C0.00019%2C0.24%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1188 SAMTools SNP 541783 541783 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C227:99 scaffold1188 SAMTools SNP 544461 544461 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C127:60 scaffold1188 SAMTools SNP 546271 546271 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C2%3BMQ%3D48%3BFQ%3D98%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold1188 SAMTools SNP 559736 559736 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C4.6e-10%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C8:11 scaffold1188 SAMTools SNP 561778 561778 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 575382 575382 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1188 SAMTools SNP 583150 583150 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 583808 583808 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C42%2C0:81 scaffold1188 SAMTools SNP 583841 583841 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C81:84 scaffold1188 SAMTools SNP 584659 584659 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.32%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1188 SAMTools SNP 584677 584677 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1188 SAMTools SNP 584713 584713 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 584770 584770 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 588453 588453 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1188 SAMTools SNP 589296 589296 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 589312 589312 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 589389 589389 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 589398 589398 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 594247 594247 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1188 SAMTools SNP 594274 594274 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D42%3BFQ%3D43.8%3BPV4%3D1%2C0.093%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C71:74 scaffold1188 SAMTools SNP 594275 594275 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C158:66 scaffold1188 SAMTools SNP 594301 594301 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D47%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C217:85 scaffold1188 SAMTools SNP 595062 595062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1188 SAMTools SNP 595399 595399 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C226:33 scaffold1188 SAMTools SNP 595431 595431 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C201:66 scaffold1188 SAMTools SNP 595516 595516 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C30%2C0:57 scaffold1188 SAMTools SNP 597177 597177 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D41%3BFQ%3D4.77%3BPV4%3D1%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C149:28 scaffold1188 SAMTools SNP 597275 597275 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 597318 597318 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C2%2C18%2C0%3BMQ%3D48%3BFQ%3D-22%3BPV4%3D0.014%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C5:8 scaffold1188 SAMTools SNP 598003 598003 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1188 SAMTools SNP 598217 598217 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 598223 598223 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 598420 598420 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1188 SAMTools SNP 601141 601141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 602716 602716 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 605623 605623 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 605724 605724 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 606120 606120 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold1188 SAMTools SNP 606156 606156 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1188 SAMTools SNP 606262 606262 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14%3BPV4%3D0.33%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold1188 SAMTools SNP 608793 608793 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 613390 613390 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1188 SAMTools SNP 613573 613573 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1188 SAMTools SNP 614461 614461 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 614657 614657 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1188 SAMTools SNP 614659 614659 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1188 SAMTools SNP 614692 614692 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1188 SAMTools SNP 616642 616642 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1188 SAMTools SNP 616707 616707 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C254:99 scaffold1188 SAMTools SNP 616946 616946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C4%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1188 SAMTools SNP 616975 616975 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00017%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1188 SAMTools SNP 616992 616992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1188 SAMTools SNP 618712 618712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C76%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1188 SAMTools SNP 618742 618742 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1188 SAMTools SNP 618790 618790 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 618812 618812 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1188 SAMTools SNP 620018 620018 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1188 SAMTools SNP 620279 620279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1188 SAMTools SNP 621015 621015 56.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1188 SAMTools SNP 621538 621538 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 621580 621580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1188 SAMTools SNP 621637 621637 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C57%2C0:99 scaffold1188 SAMTools SNP 622007 622007 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1188 SAMTools SNP 623985 623985 173 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C11%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.42%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1188 SAMTools SNP 623997 623997 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.028%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1188 SAMTools SNP 624033 624033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1188 SAMTools SNP 624117 624117 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C39%2C31%2C12%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.31%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1188 SAMTools SNP 624150 624150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1188 SAMTools SNP 624664 624664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C98%2C33%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 628257 628257 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1188 SAMTools SNP 628290 628290 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1188 SAMTools SNP 630035 630035 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C117%2C0:99 scaffold1188 SAMTools SNP 630707 630707 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold1188 SAMTools SNP 630819 630819 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C78%2C0:99 scaffold1188 SAMTools SNP 631375 631375 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C251:40 scaffold1188 SAMTools SNP 631967 631967 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.6%2C6e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1188 SAMTools SNP 632959 632959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.1e-10%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold1188 SAMTools SNP 684021 684021 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 684069 684069 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1188 SAMTools SNP 684093 684093 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1188 SAMTools SNP 684126 684126 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1188 SAMTools SNP 684905 684905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 688548 688548 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold1188 SAMTools SNP 688581 688581 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1188 SAMTools SNP 689052 689052 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C27%2C0:51 scaffold1188 SAMTools SNP 690223 690223 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C221:99 scaffold1188 SAMTools SNP 690286 690286 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.069%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1188 SAMTools SNP 691872 691872 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C20:23 scaffold1188 SAMTools SNP 692553 692553 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold1188 SAMTools SNP 692994 692994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 693060 693060 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1188 SAMTools SNP 695950 695950 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 700850 700850 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1188 SAMTools SNP 752578 752578 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1188 SAMTools SNP 773665 773665 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1188 SAMTools SNP 773721 773721 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 773981 773981 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 774960 774960 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C150:90 scaffold1188 SAMTools SNP 775415 775415 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1188 SAMTools SNP 796016 796016 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1188 SAMTools SNP 811749 811749 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 811786 811786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 814845 814845 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1188 SAMTools SNP 816537 816537 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1188 SAMTools SNP 816881 816881 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1188 SAMTools SNP 816902 816902 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1188 SAMTools SNP 817209 817209 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1188 SAMTools SNP 821268 821268 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1188 SAMTools SNP 825897 825897 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1188 SAMTools SNP 826247 826247 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1188 SAMTools SNP 828289 828289 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1188 SAMTools SNP 828311 828311 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1188 SAMTools SNP 828468 828468 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold1188 SAMTools SNP 835450 835450 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C93%2C0:99 scaffold1188 SAMTools SNP 836981 836981 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1188 SAMTools SNP 837015 837015 88.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C21%2C0:39 scaffold1188 SAMTools SNP 837179 837179 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D37%2C20%2C24%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.00041%2C4.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1188 SAMTools SNP 837386 837386 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C11%2C32%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.28%2C6.6e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1188 SAMTools SNP 837431 837431 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C1%2C21%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.22%2C5.7e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1188 SAMTools SNP 838830 838830 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C217:43 scaffold1188 SAMTools SNP 839016 839016 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.21%2C1.9e-07%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1188 SAMTools SNP 839023 839023 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C252:54 scaffold1188 SAMTools SNP 839091 839091 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.45%2C0.059%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C221:99 scaffold1188 SAMTools SNP 839352 839352 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1188 SAMTools SNP 845026 845026 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1188 SAMTools SNP 858053 858053 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1188 SAMTools SNP 888403 888403 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold1188 SAMTools SNP 910623 910623 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 910650 910650 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1188 SAMTools SNP 910908 910908 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1188 SAMTools SNP 918729 918729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1188 SAMTools SNP 920632 920632 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1188 SAMTools SNP 920879 920879 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1188 SAMTools SNP 923140 923140 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1188 SAMTools SNP 924857 924857 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.32%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1188 SAMTools SNP 924947 924947 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.4%2C6.7e-10%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1188 SAMTools SNP 925181 925181 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1188 SAMTools SNP 925198 925198 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.51%2C0.14%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1188 SAMTools SNP 925208 925208 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1188 SAMTools SNP 926334 926334 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1188 SAMTools SNP 930359 930359 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C81:33 scaffold1188 SAMTools SNP 930522 930522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1188 SAMTools SNP 939614 939614 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1188 SAMTools SNP 939649 939649 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.084%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1188 SAMTools SNP 943390 943390 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1188 SAMTools SNP 943879 943879 77.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold1188 SAMTools SNP 965710 965710 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C33%2C0:63 scaffold1188 SAMTools SNP 966116 966116 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C193%2C0:99 scaffold1188 SAMTools SNP 966438 966438 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.14%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C154:99 scaffold1188 SAMTools SNP 967163 967163 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C205:58 scaffold1188 SAMTools SNP 967665 967665 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C12%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 970470 970470 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1188 SAMTools SNP 981711 981711 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1188 SAMTools SNP 1010083 1010083 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1188 SAMTools SNP 1010338 1010338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1188 SAMTools SNP 1010367 1010367 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0033%2C0.046%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1188 SAMTools SNP 1010736 1010736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1188 SAMTools SNP 1011627 1011627 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.45%2C0.021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1188 SAMTools SNP 1011647 1011647 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1188 SAMTools SNP 1012546 1012546 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1188 SAMTools SNP 1014608 1014608 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.089%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C208:47 scaffold1188 SAMTools SNP 1015078 1015078 67.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1188 SAMTools SNP 1015158 1015158 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.55%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1188 SAMTools SNP 1016292 1016292 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1188 SAMTools SNP 1016323 1016323 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold1188 SAMTools SNP 1016625 1016625 58 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C111%2C0%2C69%2C74%2C66:99 scaffold1188 SAMTools SNP 1016979 1016979 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C30%2C69%2C29%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.64%2C6e-118%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1188 SAMTools SNP 1017694 1017694 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1188 SAMTools SNP 1018113 1018113 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1188 SAMTools SNP 1018139 1018139 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1188 SAMTools SNP 1018210 1018210 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1188 SAMTools SNP 1019599 1019599 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.14%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1188 SAMTools SNP 1020664 1020664 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.00081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C21:24 scaffold1188 SAMTools SNP 1020697 1020697 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C30%2C0:57 scaffold1189 SAMTools SNP 3284 3284 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 3397 3397 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C11%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1189 SAMTools SNP 4312 4312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.31%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 4418 4418 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1189 SAMTools SNP 6200 6200 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.13%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1189 SAMTools SNP 10571 10571 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0:39 scaffold1189 SAMTools SNP 10575 10575 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold1189 SAMTools SNP 11948 11948 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.041%2C1%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1189 SAMTools SNP 16212 16212 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold1189 SAMTools SNP 16257 16257 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1189 SAMTools SNP 19341 19341 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1189 SAMTools SNP 19360 19360 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1189 SAMTools SNP 19495 19495 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1189 SAMTools SNP 20019 20019 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1189 SAMTools SNP 21213 21213 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1189 SAMTools SNP 21223 21223 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 21277 21277 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1189 SAMTools SNP 21330 21330 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1189 SAMTools SNP 23212 23212 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 24534 24534 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 30831 30831 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1189 SAMTools SNP 32656 32656 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 32857 32857 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C17%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold1189 SAMTools SNP 32877 32877 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 33367 33367 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 33505 33505 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 33529 33529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 33647 33647 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1189 SAMTools SNP 33822 33822 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold1189 SAMTools SNP 34112 34112 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C20%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1189 SAMTools SNP 34949 34949 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 35245 35245 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 36409 36409 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 36493 36493 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C44%2C13%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.013%2C0.014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1189 SAMTools SNP 39544 39544 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C4%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.67%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1189 SAMTools SNP 39556 39556 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C32%2C24%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00024%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1189 SAMTools SNP 40735 40735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 41217 41217 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C13%2C29%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 41331 41331 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.48%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C25:28 scaffold1189 SAMTools SNP 41382 41382 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1189 SAMTools SNP 44095 44095 30.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1189 SAMTools SNP 44356 44356 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 45066 45066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C34%2C38%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 45404 45404 82.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C3%2C106%2C0%2C103:33 scaffold1189 SAMTools SNP 45641 45641 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C24%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1189 SAMTools SNP 45706 45706 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1189 SAMTools SNP 46008 46008 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C21:24 scaffold1189 SAMTools SNP 46041 46041 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 47349 47349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 47550 47550 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 47948 47948 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1189 SAMTools SNP 48811 48811 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C34%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.00053%2C0.14%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1189 SAMTools SNP 48905 48905 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C17%2C2%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1189 SAMTools SNP 53116 53116 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.8e-23%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C197:37 scaffold1189 SAMTools SNP 54569 54569 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C6%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 54644 54644 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.65%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1189 SAMTools SNP 55841 55841 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.32%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold1189 SAMTools SNP 60670 60670 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C12%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.34%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold1189 SAMTools SNP 60673 60673 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1189 SAMTools SNP 60682 60682 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1189 SAMTools SNP 60748 60748 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1189 SAMTools SNP 63982 63982 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.29%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C153:34 scaffold1189 SAMTools SNP 66884 66884 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1189 SAMTools SNP 67278 67278 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.41%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C231:90 scaffold1189 SAMTools SNP 67299 67299 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.5e-24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C228:39 scaffold1189 SAMTools SNP 67828 67828 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1189 SAMTools SNP 67873 67873 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold1189 SAMTools SNP 67933 67933 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1189 SAMTools SNP 67945 67945 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1189 SAMTools SNP 68325 68325 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1189 SAMTools SNP 68551 68551 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.47%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1189 SAMTools SNP 68603 68603 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1189 SAMTools SNP 69153 69153 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 69521 69521 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1189 SAMTools SNP 69535 69535 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold1189 SAMTools SNP 69616 69616 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1189 SAMTools SNP 70348 70348 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1189 SAMTools SNP 73864 73864 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 73954 73954 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1189 SAMTools SNP 75147 75147 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1189 SAMTools SNP 75229 75229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 75857 75857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 77479 77479 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 79170 79170 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1189 SAMTools SNP 79186 79186 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 81247 81247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C6.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1189 SAMTools SNP 81667 81667 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1189 SAMTools SNP 84536 84536 7.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1189 SAMTools SNP 85566 85566 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1189 SAMTools SNP 86953 86953 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1189 SAMTools SNP 89414 89414 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1189 SAMTools SNP 89450 89450 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C6.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 89824 89824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C3%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.00011%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 90210 90210 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1189 SAMTools SNP 90215 90215 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C4%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.17%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1189 SAMTools SNP 90273 90273 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 90410 90410 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.079%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1189 SAMTools SNP 95762 95762 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1189 SAMTools SNP 97399 97399 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1189 SAMTools SNP 97434 97434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.13%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 97906 97906 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 98318 98318 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 98502 98502 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C4%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 98760 98760 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1189 SAMTools SNP 99879 99879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 101445 101445 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 101448 101448 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1189 SAMTools SNP 102368 102368 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1189 SAMTools SNP 102428 102428 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1189 SAMTools SNP 102956 102956 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1189 SAMTools SNP 102958 102958 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold1189 SAMTools SNP 103213 103213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1189 SAMTools SNP 103483 103483 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1189 SAMTools SNP 103522 103522 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1189 SAMTools SNP 103600 103600 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1189 SAMTools SNP 103918 103918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1189 SAMTools SNP 104017 104017 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1189 SAMTools SNP 104298 104298 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1189 SAMTools SNP 104369 104369 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C63%2C0:99 scaffold1189 SAMTools SNP 105506 105506 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1189 SAMTools SNP 106253 106253 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1189 SAMTools SNP 107387 107387 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold1189 SAMTools SNP 111722 111722 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D0.33%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C32:35 scaffold1189 SAMTools SNP 135663 135663 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1189 SAMTools SNP 135932 135932 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 136149 136149 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1189 SAMTools SNP 136439 136439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1189 SAMTools SNP 137253 137253 182 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C33%2C0:63 scaffold1189 SAMTools SNP 137280 137280 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C39%2C0:75 scaffold1189 SAMTools SNP 137354 137354 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold1189 SAMTools SNP 137952 137952 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1189 SAMTools SNP 156225 156225 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D32%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C69:72 scaffold1189 SAMTools SNP 159021 159021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D39%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1189 SAMTools SNP 159064 159064 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C12%2C13%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C1%2C0.4%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 162104 162104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C61%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 162145 162145 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C252:99 scaffold1189 SAMTools SNP 162166 162166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 163473 163473 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0014%2C2.7e-05%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1189 SAMTools SNP 164054 164054 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.49%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1189 SAMTools SNP 164071 164071 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.2%2C0.041%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C202:72 scaffold1189 SAMTools SNP 164180 164180 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold1189 SAMTools SNP 164512 164512 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1189 SAMTools SNP 164563 164563 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1189 SAMTools SNP 166586 166586 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1189 SAMTools SNP 166595 166595 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1189 SAMTools SNP 168190 168190 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 168200 168200 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 169358 169358 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1189 SAMTools SNP 172377 172377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1189 SAMTools SNP 204815 204815 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1189 SAMTools SNP 204930 204930 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1189 SAMTools SNP 204966 204966 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1189 SAMTools SNP 205523 205523 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1189 SAMTools SNP 205581 205581 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D994%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C27%2C0:51 scaffold1189 SAMTools SNP 205692 205692 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C196%2C2%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.0095%2C1%2C9.4e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 205729 205729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 205827 205827 59.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1189 SAMTools SNP 205857 205857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C1%3BMQ%3D44%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1189 SAMTools SNP 206472 206472 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D647%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D356%2C0%2C283%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.2%2C0%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1189 SAMTools SNP 206576 206576 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C30%2C0:57 scaffold1189 SAMTools SNP 217616 217616 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C18%2C0:33 scaffold1189 SAMTools SNP 218408 218408 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C42%2C0:81 scaffold1189 SAMTools SNP 218491 218491 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C185%2C5%2C162%3BMQ%3D50%3BFQ%3D220%3BPV4%3D3e-16%2C1%2C0.0019%2C2.4e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1189 SAMTools SNP 218524 218524 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C59%2C128%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C1%2C6.5e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 219334 219334 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C5%2C116%2C8%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.26%2C2.5e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1189 SAMTools SNP 219382 219382 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1189 SAMTools SNP 224158 224158 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D543%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D235%2C53%2C214%2C41%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.5%2C1.2e-14%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 224552 224552 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C176%2C118%2C62%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.7e-08%2C1%2C0.31%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 224672 224672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D710%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C118%2C313%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 226331 226331 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D776%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D250%2C117%2C239%2C169%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C0.021%2C1%2C3.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 226332 226332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D801%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C188%2C249%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 226999 226999 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 227691 227691 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1189 SAMTools SNP 230246 230246 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D654%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C279%2C0%2C189%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4.4e-291%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1189 SAMTools SNP 262052 262052 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1189 SAMTools SNP 263166 263166 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1189 SAMTools SNP 266629 266629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 269622 269622 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1189 SAMTools SNP 289343 289343 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 290105 290105 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 290423 290423 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1189 SAMTools SNP 290433 290433 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1189 SAMTools SNP 305871 305871 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 306990 306990 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1189 SAMTools SNP 307021 307021 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1189 SAMTools SNP 307029 307029 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1189 SAMTools SNP 309483 309483 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold1189 SAMTools SNP 310883 310883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 311283 311283 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1189 SAMTools SNP 311286 311286 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1189 SAMTools SNP 311845 311845 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 313659 313659 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1189 SAMTools SNP 314408 314408 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.6%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1189 SAMTools SNP 314654 314654 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.091%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C136:83 scaffold1189 SAMTools SNP 318471 318471 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 318476 318476 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 318867 318867 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 319518 319518 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 319521 319521 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 319559 319559 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C33%2C0:63 scaffold1189 SAMTools SNP 320561 320561 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C5%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 323105 323105 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C74%2C44%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.38%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 323379 323379 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C3%2C35%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 323737 323737 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C60%2C6%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0004%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1189 SAMTools SNP 324242 324242 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C38%2C44%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 324664 324664 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 326891 326891 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1189 SAMTools SNP 327045 327045 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold1189 SAMTools SNP 327330 327330 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1189 SAMTools SNP 327786 327786 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1189 SAMTools SNP 327852 327852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1189 SAMTools SNP 328386 328386 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C62%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1189 SAMTools SNP 328400 328400 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C61%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1189 SAMTools SNP 328446 328446 151 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C71%2C190%2C0%2C184:29 scaffold1189 SAMTools SNP 328479 328479 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1189 SAMTools SNP 333139 333139 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C60%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1189 SAMTools SNP 333211 333211 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C3%2C70%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 333214 333214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C5%2C77%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 333546 333546 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C43%2C5%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1189 SAMTools SNP 334647 334647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C57%2C47%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 335342 335342 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1189 SAMTools SNP 336351 336351 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C26%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.43%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C239:99 scaffold1189 SAMTools SNP 347820 347820 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 372071 372071 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1189 SAMTools SNP 372404 372404 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1189 SAMTools SNP 372920 372920 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1189 SAMTools SNP 375932 375932 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold1189 SAMTools SNP 398722 398722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 401194 401194 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1189 SAMTools SNP 401210 401210 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1189 SAMTools SNP 405386 405386 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1189 SAMTools SNP 405642 405642 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1189 SAMTools SNP 405651 405651 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.062%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold1189 SAMTools SNP 405714 405714 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.49%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1189 SAMTools SNP 408479 408479 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C7%2C0%3BMQ%3D48%3BFQ%3D120%3BPV4%3D0.071%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1189 SAMTools SNP 408488 408488 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C14%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0052%2C3.6e-07%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 410747 410747 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C0%2C15%3BMQ%3D49%3BFQ%3D175%3BPV4%3D0.0013%2C1%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1189 SAMTools SNP 410759 410759 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C7%2C14%3BMQ%3D49%3BFQ%3D182%3BPV4%3D0.027%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1189 SAMTools SNP 410768 410768 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C13%3BMQ%3D48%3BFQ%3D178%3BPV4%3D0.25%2C1%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1189 SAMTools SNP 412136 412136 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 412449 412449 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1189 SAMTools SNP 412509 412509 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1189 SAMTools SNP 412521 412521 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1189 SAMTools SNP 412554 412554 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1189 SAMTools SNP 413023 413023 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0:56 scaffold1189 SAMTools SNP 413083 413083 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1189 SAMTools SNP 413092 413092 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1189 SAMTools SNP 413116 413116 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 414830 414830 16.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D15%3BFQ%3D-37%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C10%2C0:17 scaffold1189 SAMTools SNP 415090 415090 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold1189 SAMTools SNP 415114 415114 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 418371 418371 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1189 SAMTools SNP 424790 424790 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1189 SAMTools SNP 428199 428199 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1189 SAMTools SNP 428209 428209 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 461344 461344 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1189 SAMTools SNP 493517 493517 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold1189 SAMTools SNP 495115 495115 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 495128 495128 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 496175 496175 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 497898 497898 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 497899 497899 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 504004 504004 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1189 SAMTools SNP 504090 504090 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1189 SAMTools SNP 509111 509111 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 509164 509164 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1189 SAMTools SNP 512184 512184 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1189 SAMTools SNP 514459 514459 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.49%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C221:30 scaffold1189 SAMTools SNP 514502 514502 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1189 SAMTools SNP 515445 515445 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1189 SAMTools SNP 515463 515463 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1189 SAMTools SNP 516486 516486 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C94:97 scaffold1189 SAMTools SNP 527383 527383 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 527391 527391 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0099%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 528339 528339 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C51%2C0:99 scaffold1189 SAMTools SNP 539654 539654 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.031%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1189 SAMTools SNP 539671 539671 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C91%2C0%2C39%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.00039%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C230:74 scaffold1189 SAMTools SNP 539674 539674 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C121%3BMQ%3D50%3BFQ%3D-205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1189 SAMTools SNP 544558 544558 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 544907 544907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 547268 547268 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 549013 549013 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 549967 549967 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1189 SAMTools SNP 549970 549970 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1189 SAMTools SNP 549988 549988 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C187:99 scaffold1189 SAMTools SNP 549990 549990 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold1189 SAMTools SNP 550337 550337 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C0.33%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1189 SAMTools SNP 550389 550389 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1189 SAMTools SNP 553014 553014 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1189 SAMTools SNP 554852 554852 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C65%2C24%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1.8e-17%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 557776 557776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1189 SAMTools SNP 557803 557803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C67%2C16%3BMQ%3D50%3BFQ%3D-244%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1189 SAMTools SNP 557824 557824 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C22%2C21%2C14%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.00012%2C0.00078%2C1%2C9.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1189 SAMTools SNP 571423 571423 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 572956 572956 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 574627 574627 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1189 SAMTools SNP 574665 574665 41.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1189 SAMTools SNP 581399 581399 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 582111 582111 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 582759 582759 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 585100 585100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 585145 585145 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 585595 585595 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold1189 SAMTools SNP 585610 585610 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 585661 585661 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1189 SAMTools SNP 586849 586849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1189 SAMTools SNP 586852 586852 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1189 SAMTools SNP 588496 588496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1189 SAMTools SNP 588727 588727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1189 SAMTools SNP 589037 589037 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C4.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C116:60 scaffold1189 SAMTools SNP 594213 594213 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1189 SAMTools SNP 594443 594443 38.3 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C28%2C13%2C69%2C0%2C63:27 scaffold1189 SAMTools SNP 613088 613088 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1189 SAMTools SNP 632925 632925 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 742924 742924 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1189 SAMTools SNP 742926 742926 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1189 SAMTools SNP 744236 744236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1189 SAMTools SNP 744896 744896 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1189 SAMTools SNP 745423 745423 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold1189 SAMTools SNP 745441 745441 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold1189 SAMTools SNP 745503 745503 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C47:50 scaffold1189 SAMTools SNP 748780 748780 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C94%2C2%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 756139 756139 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C20%2C1%3BMQ%3D43%3BFQ%3D-72%3BPV4%3D1%2C0.26%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1189 SAMTools SNP 759153 759153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C8%2C23%3BMQ%3D45%3BFQ%3D-85%3BPV4%3D0.082%2C0.47%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold1189 SAMTools SNP 759261 759261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C4%3BMQ%3D40%3BFQ%3D41%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1189 SAMTools SNP 761912 761912 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1189 SAMTools SNP 762013 762013 37.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1189 SAMTools SNP 763543 763543 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C44%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.16%2C8.8e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C217:77 scaffold1189 SAMTools SNP 763586 763586 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1189 SAMTools SNP 765637 765637 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 765667 765667 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.59%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1189 SAMTools SNP 768638 768638 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1189 SAMTools SNP 768652 768652 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1189 SAMTools SNP 768711 768711 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.38%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1189 SAMTools SNP 769517 769517 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1189 SAMTools SNP 769563 769563 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 775601 775601 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1189 SAMTools SNP 775646 775646 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1189 SAMTools SNP 776204 776204 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C212:99 scaffold1189 SAMTools SNP 776793 776793 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C91%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 778430 778430 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C24%2C13%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-15%2C1%2C1%2C5.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 778464 778464 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1189 SAMTools SNP 778473 778473 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D53%2C22%2C17%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0095%2C9.8e-15%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1189 SAMTools SNP 778580 778580 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C82%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-07%2C1%2C1%2C2.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1189 SAMTools SNP 779206 779206 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C46%2C20%2C38%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.85%2C2.1e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1189 SAMTools SNP 779468 779468 79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C0%2C45%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C3.6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1189 SAMTools SNP 779915 779915 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1189 SAMTools SNP 779953 779953 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1189 SAMTools SNP 843702 843702 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 844012 844012 43.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1189 SAMTools SNP 851336 851336 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1189 SAMTools SNP 852468 852468 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C4.1e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C218:73 scaffold1189 SAMTools SNP 852479 852479 222 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0%2C255%2C96%2C249:99 scaffold1189 SAMTools SNP 852494 852494 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C17%2C0%3BMQ%3D49%3BFQ%3D172%3BPV4%3D0.23%2C1e-05%2C1%2C1.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1189 SAMTools SNP 852506 852506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1189 SAMTools SNP 852969 852969 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C54%2C0:99 scaffold1189 SAMTools SNP 853067 853067 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C69%2C0:99 scaffold1191 SAMTools SNP 1353 1353 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 1392 1392 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 1488 1488 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 8521 8521 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 9237 9237 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 9536 9536 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.029%2C1.8e-06%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1191 SAMTools SNP 9635 9635 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C250:99 scaffold1191 SAMTools SNP 25110 25110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1191 SAMTools SNP 25143 25143 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 69524 69524 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1191 SAMTools SNP 69545 69545 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1191 SAMTools SNP 69573 69573 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1191 SAMTools SNP 69627 69627 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1191 SAMTools SNP 69630 69630 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1191 SAMTools SNP 69884 69884 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.083%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C178:69 scaffold1191 SAMTools SNP 69899 69899 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C197:72 scaffold1191 SAMTools SNP 70309 70309 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1191 SAMTools SNP 70455 70455 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1191 SAMTools SNP 70878 70878 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1191 SAMTools SNP 70910 70910 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1191 SAMTools SNP 71205 71205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1191 SAMTools SNP 71235 71235 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1191 SAMTools SNP 71458 71458 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1191 SAMTools SNP 71666 71666 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1191 SAMTools SNP 71706 71706 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1191 SAMTools SNP 72778 72778 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1191 SAMTools SNP 72790 72790 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1191 SAMTools SNP 73353 73353 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1191 SAMTools SNP 73528 73528 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1191 SAMTools SNP 73828 73828 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1191 SAMTools SNP 73835 73835 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1191 SAMTools SNP 74442 74442 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C3.7e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C124:39 scaffold1191 SAMTools SNP 74554 74554 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1191 SAMTools SNP 74591 74591 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1191 SAMTools SNP 77063 77063 12.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1191 SAMTools SNP 77108 77108 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1191 SAMTools SNP 77323 77323 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1191 SAMTools SNP 78194 78194 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1191 SAMTools SNP 78206 78206 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1191 SAMTools SNP 78334 78334 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1191 SAMTools SNP 78374 78374 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1191 SAMTools SNP 78565 78565 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 79340 79340 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 79368 79368 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1191 SAMTools SNP 79556 79556 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1191 SAMTools SNP 79559 79559 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1191 SAMTools SNP 79955 79955 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 79961 79961 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 99510 99510 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C235:41 scaffold1191 SAMTools SNP 99580 99580 47.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1191 SAMTools SNP 99792 99792 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C39%2C0:75 scaffold1191 SAMTools SNP 103433 103433 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C255%2C0:99 scaffold1191 SAMTools SNP 103499 103499 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1191 SAMTools SNP 104978 104978 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C28%2C18%2C19%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1.5e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1191 SAMTools SNP 105668 105668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1191 SAMTools SNP 106004 106004 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1191 SAMTools SNP 106255 106255 44.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1191 SAMTools SNP 106732 106732 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.02%2C2.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1191 SAMTools SNP 107279 107279 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0058%2C4.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C232:91 scaffold1191 SAMTools SNP 107390 107390 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.007%2C2.2e-09%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1191 SAMTools SNP 108643 108643 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1191 SAMTools SNP 109645 109645 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1191 SAMTools SNP 109693 109693 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1191 SAMTools SNP 111727 111727 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.2%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C194:81 scaffold1191 SAMTools SNP 111742 111742 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C117:85 scaffold1191 SAMTools SNP 112003 112003 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.009%2C0.0007%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C216:78 scaffold1191 SAMTools SNP 112030 112030 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C66%2C0:99 scaffold1191 SAMTools SNP 112507 112507 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C51%2C0:99 scaffold1191 SAMTools SNP 112513 112513 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C45%2C0:87 scaffold1191 SAMTools SNP 112610 112610 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C42%2C0:81 scaffold1191 SAMTools SNP 112720 112720 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C103:86 scaffold1191 SAMTools SNP 115605 115605 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C24%2C0:45 scaffold1191 SAMTools SNP 115629 115629 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.012%2C7.7e-07%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C176:62 scaffold1191 SAMTools SNP 118612 118612 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D37%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C33%2C0:63 scaffold1191 SAMTools SNP 119195 119195 64.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1195 SAMTools SNP 20334 20334 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 20382 20382 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1195 SAMTools SNP 20403 20403 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1195 SAMTools SNP 20885 20885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 20962 20962 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C227:99 scaffold1195 SAMTools SNP 21751 21751 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold1195 SAMTools SNP 21766 21766 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold1195 SAMTools SNP 22166 22166 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 22565 22565 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1195 SAMTools SNP 22737 22737 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 22758 22758 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 22995 22995 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 23619 23619 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1195 SAMTools SNP 23639 23639 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1195 SAMTools SNP 23652 23652 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1195 SAMTools SNP 24096 24096 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1195 SAMTools SNP 27489 27489 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 33996 33996 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 34005 34005 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 38619 38619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C43%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 39707 39707 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C46%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C252:99 scaffold1195 SAMTools SNP 39724 39724 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1195 SAMTools SNP 44861 44861 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1195 SAMTools SNP 44912 44912 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1195 SAMTools SNP 44933 44933 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C7%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1195 SAMTools SNP 45275 45275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D518%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C300%2C47%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 45290 45290 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C126%2C107%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1.6e-20%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1195 SAMTools SNP 45374 45374 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C409%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 45428 45428 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C179%2C20%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 45434 45434 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C48%2C81%2C15%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1195 SAMTools SNP 45831 45831 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C27%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C114%2C0:99 scaffold1195 SAMTools SNP 46318 46318 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D649%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C163%2C150%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 46358 46358 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D591%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1195 SAMTools SNP 46490 46490 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C99%2C70%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 47165 47165 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D280%2C79%2C112%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1.7e-09%2C4.9e-18%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1195 SAMTools SNP 50257 50257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 50278 50278 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 51463 51463 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1195 SAMTools SNP 51469 51469 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1195 SAMTools SNP 51490 51490 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1195 SAMTools SNP 51979 51979 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1195 SAMTools SNP 51991 51991 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1195 SAMTools SNP 52018 52018 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C86:33 scaffold1195 SAMTools SNP 52488 52488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C29%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1195 SAMTools SNP 52497 52497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C37%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1195 SAMTools SNP 52627 52627 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 52647 52647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.029%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 52656 52656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 52875 52875 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1195 SAMTools SNP 52897 52897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.017%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 52918 52918 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C1%2C14%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.004%2C0.02%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1195 SAMTools SNP 52930 52930 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 53550 53550 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 53870 53870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C27%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1195 SAMTools SNP 53903 53903 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1195 SAMTools SNP 53966 53966 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1195 SAMTools SNP 53990 53990 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C41%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.00078%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1195 SAMTools SNP 54310 54310 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C42%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 54325 54325 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C29%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.032%2C2.4e-08%2C1%2C2.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1195 SAMTools SNP 57473 57473 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1195 SAMTools SNP 57479 57479 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1195 SAMTools SNP 58014 58014 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C224:99 scaffold1195 SAMTools SNP 58035 58035 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.028%2C0.13%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C241:99 scaffold1195 SAMTools SNP 58038 58038 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C237:99 scaffold1195 SAMTools SNP 58172 58172 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1195 SAMTools SNP 58205 58205 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1195 SAMTools SNP 58322 58322 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C39:42 scaffold1195 SAMTools SNP 58340 58340 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1195 SAMTools SNP 60649 60649 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C68%2C16%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1195 SAMTools SNP 60718 60718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 60911 60911 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C53%2C99%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 61202 61202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 61233 61233 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0025%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1195 SAMTools SNP 61480 61480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C27%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1195 SAMTools SNP 61558 61558 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1195 SAMTools SNP 61567 61567 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C63%2C0:99 scaffold1195 SAMTools SNP 61658 61658 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D79.5%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C107:99 scaffold1195 SAMTools SNP 62179 62179 52.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1195 SAMTools SNP 62236 62236 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1195 SAMTools SNP 62263 62263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C14%2C38%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.00096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold1195 SAMTools SNP 62787 62787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C32%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1195 SAMTools SNP 62835 62835 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1195 SAMTools SNP 63105 63105 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1195 SAMTools SNP 63183 63183 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.27%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1195 SAMTools SNP 63195 63195 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C142:63 scaffold1195 SAMTools SNP 63210 63210 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 63219 63219 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1195 SAMTools SNP 63465 63465 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C10%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1195 SAMTools SNP 63501 63501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1195 SAMTools SNP 63561 63561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1195 SAMTools SNP 63576 63576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1195 SAMTools SNP 64219 64219 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1195 SAMTools SNP 64249 64249 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1195 SAMTools SNP 64474 64474 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 66227 66227 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 66919 66919 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1195 SAMTools SNP 67054 67054 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C62%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1195 SAMTools SNP 67571 67571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 67637 67637 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1195 SAMTools SNP 67936 67936 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C13%2C100%2C45%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D7.8e-06%2C0.00055%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1195 SAMTools SNP 67963 67963 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C28%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1195 SAMTools SNP 68455 68455 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00078%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1195 SAMTools SNP 68503 68503 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1195 SAMTools SNP 68530 68530 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1195 SAMTools SNP 68554 68554 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C27%2C0:51 scaffold1195 SAMTools SNP 68871 68871 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1195 SAMTools SNP 68919 68919 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1195 SAMTools SNP 69000 69000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1195 SAMTools SNP 69030 69030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C32%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.062%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1195 SAMTools SNP 69222 69222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C21%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1195 SAMTools SNP 69333 69333 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C73%2C27%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0023%2C1%2C1%2C5.7e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1195 SAMTools SNP 69356 69356 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 69564 69564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C99%2C6%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 69570 69570 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C99%2C4%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 69801 69801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 69843 69843 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1195 SAMTools SNP 70143 70143 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1195 SAMTools SNP 70284 70284 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1195 SAMTools SNP 70287 70287 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1195 SAMTools SNP 70540 70540 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1195 SAMTools SNP 70555 70555 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1195 SAMTools SNP 71100 71100 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1195 SAMTools SNP 71438 71438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 71635 71635 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C30%2C105%3BMQ%3D50%3BFQ%3D-228%3BPV4%3D1%2C0.18%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C201%2C0:99 scaffold1195 SAMTools SNP 71689 71689 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1195 SAMTools SNP 72650 72650 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 72672 72672 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1195 SAMTools SNP 73390 73390 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1195 SAMTools SNP 73570 73570 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C34%2C22%2C13%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.21%2C1.3e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1195 SAMTools SNP 73613 73613 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.002%2C7.4e-08%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1195 SAMTools SNP 73865 73865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C54%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1195 SAMTools SNP 73889 73889 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C23%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C0.2%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 76023 76023 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1195 SAMTools SNP 76077 76077 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C30%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C0.021%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold1195 SAMTools SNP 76132 76132 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1195 SAMTools SNP 76146 76146 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1195 SAMTools SNP 76179 76179 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1195 SAMTools SNP 76619 76619 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1195 SAMTools SNP 77923 77923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C8%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 77932 77932 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C0.055%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 77983 77983 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1195 SAMTools SNP 78004 78004 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1195 SAMTools SNP 78486 78486 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C225:87 scaffold1195 SAMTools SNP 78510 78510 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1195 SAMTools SNP 78576 78576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1195 SAMTools SNP 78591 78591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1195 SAMTools SNP 78935 78935 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1195 SAMTools SNP 79481 79481 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C9%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold1195 SAMTools SNP 79726 79726 159 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C63%2C242%2C0%2C236:45 scaffold1195 SAMTools SNP 80133 80133 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C90%2C9%2C12%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1195 SAMTools SNP 80151 80151 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C35%2C3%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.5%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1195 SAMTools SNP 80819 80819 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C110%2C19%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 81219 81219 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 81606 81606 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C23%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1195 SAMTools SNP 82186 82186 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1195 SAMTools SNP 82521 82521 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C11%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1195 SAMTools SNP 82652 82652 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.011%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 83165 83165 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C6%2C18%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.34%2C0.038%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1195 SAMTools SNP 83169 83169 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C27%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.025%2C5.3e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1195 SAMTools SNP 83186 83186 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0068%2C1.8e-06%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1195 SAMTools SNP 84568 84568 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C41%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.67%2C7.1e-17%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C210:99 scaffold1195 SAMTools SNP 84613 84613 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C36%2C0:69 scaffold1195 SAMTools SNP 85049 85049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1195 SAMTools SNP 85109 85109 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold1195 SAMTools SNP 85184 85184 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C200:99 scaffold1195 SAMTools SNP 85337 85337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C19%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1195 SAMTools SNP 86053 86053 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1195 SAMTools SNP 86170 86170 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C5.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C169:70 scaffold1195 SAMTools SNP 86263 86263 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C144%2C0:99 scaffold1195 SAMTools SNP 86302 86302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C38%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1195 SAMTools SNP 86571 86571 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 86618 86618 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.047%2C0.19%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1195 SAMTools SNP 86705 86705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1195 SAMTools SNP 86723 86723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1195 SAMTools SNP 87198 87198 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.091%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1195 SAMTools SNP 87235 87235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 87237 87237 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 87555 87555 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.28%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1195 SAMTools SNP 87573 87573 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.14%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1195 SAMTools SNP 87987 87987 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C23%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1195 SAMTools SNP 88237 88237 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 88782 88782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C39%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1195 SAMTools SNP 88863 88863 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1195 SAMTools SNP 88875 88875 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1195 SAMTools SNP 88879 88879 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C9%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C205:99 scaffold1195 SAMTools SNP 89171 89171 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1195 SAMTools SNP 89378 89378 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.11%2C9.6e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C241:99 scaffold1195 SAMTools SNP 89432 89432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1195 SAMTools SNP 89444 89444 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C1%2C13%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1195 SAMTools SNP 89653 89653 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C3%2C19%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1195 SAMTools SNP 89677 89677 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0004%2C0.25%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1195 SAMTools SNP 89704 89704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 89743 89743 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1195 SAMTools SNP 89755 89755 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1195 SAMTools SNP 90127 90127 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.029%2C1%2C1%2C9.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1195 SAMTools SNP 90158 90158 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C51%2C0:99 scaffold1195 SAMTools SNP 90272 90272 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.00022%2C7.5e-14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1195 SAMTools SNP 90281 90281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1195 SAMTools SNP 90678 90678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1195 SAMTools SNP 91015 91015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1195 SAMTools SNP 91069 91069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1195 SAMTools SNP 91084 91084 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1195 SAMTools SNP 93016 93016 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1195 SAMTools SNP 93829 93829 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1195 SAMTools SNP 93844 93844 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1195 SAMTools SNP 93877 93877 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1195 SAMTools SNP 93889 93889 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.32%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1195 SAMTools SNP 94955 94955 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 94963 94963 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.46%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C186:99 scaffold1195 SAMTools SNP 94966 94966 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.45%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C221:99 scaffold1195 SAMTools SNP 95020 95020 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.053%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1195 SAMTools SNP 95521 95521 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C78%2C0:99 scaffold1195 SAMTools SNP 95614 95614 8.44 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C23%2C17%2C38%2C0%2C35:8 scaffold1195 SAMTools SNP 95665 95665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1195 SAMTools SNP 96181 96181 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1195 SAMTools SNP 96271 96271 193 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C102%2C0%2C218%2C79%2C215:99 scaffold1195 SAMTools SNP 96283 96283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1195 SAMTools SNP 96343 96343 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1195 SAMTools SNP 96661 96661 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0193%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1195 SAMTools SNP 96697 96697 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1195 SAMTools SNP 96703 96703 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1195 SAMTools SNP 96919 96919 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1195 SAMTools SNP 96991 96991 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C78%2C0:99 scaffold1195 SAMTools SNP 97123 97123 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1195 SAMTools SNP 97468 97468 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 97489 97489 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 97669 97669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1195 SAMTools SNP 97729 97729 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1195 SAMTools SNP 97846 97846 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1195 SAMTools SNP 98232 98232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1195 SAMTools SNP 98299 98299 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1195 SAMTools SNP 98816 98816 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1195 SAMTools SNP 98930 98930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C11%2C129%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 99510 99510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1195 SAMTools SNP 99523 99523 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1195 SAMTools SNP 101109 101109 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C220:99 scaffold1195 SAMTools SNP 102604 102604 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1195 SAMTools SNP 102899 102899 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1195 SAMTools SNP 102914 102914 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1195 SAMTools SNP 102953 102953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1195 SAMTools SNP 102989 102989 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C1%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1195 SAMTools SNP 104208 104208 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C0%2C12%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.045%2C1%2C1%2C1.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1195 SAMTools SNP 104519 104519 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C696%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1195 SAMTools SNP 106810 106810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C65%2C28%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 107552 107552 178 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C13%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.5%2C0.0038%2C1%2C2.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1195 SAMTools SNP 107555 107555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C15%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1195 SAMTools SNP 107900 107900 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C26%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 114340 114340 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C0%2C115%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C2.8e-112%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 135487 135487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C36%2C64%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 135601 135601 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C39%2C47%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 136976 136976 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 139780 139780 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 142201 142201 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 142210 142210 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C22%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1195 SAMTools SNP 143564 143564 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.59%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1195 SAMTools SNP 143568 143568 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.45%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1195 SAMTools SNP 145529 145529 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1195 SAMTools SNP 145679 145679 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.6%2C2.3e-11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1195 SAMTools SNP 149472 149472 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1195 SAMTools SNP 149622 149622 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 151717 151717 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1195 SAMTools SNP 153380 153380 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1195 SAMTools SNP 155382 155382 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1195 SAMTools SNP 157345 157345 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.057%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C223:34 scaffold1195 SAMTools SNP 157359 157359 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.0014%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C235:99 scaffold1195 SAMTools SNP 157995 157995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1195 SAMTools SNP 158150 158150 19 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1195 SAMTools SNP 158287 158287 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1195 SAMTools SNP 158299 158299 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.094%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C79:82 scaffold1195 SAMTools SNP 204258 204258 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold1195 SAMTools SNP 204291 204291 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1195 SAMTools SNP 243474 243474 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1195 SAMTools SNP 243533 243533 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1199 SAMTools SNP 10417 10417 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1199 SAMTools SNP 10543 10543 57.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold1199 SAMTools SNP 10712 10712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1199 SAMTools SNP 10954 10954 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1199 SAMTools SNP 11236 11236 191 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C63%2C0%2C217%2C43%2C214:99 scaffold1199 SAMTools SNP 11350 11350 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C244:53 scaffold1199 SAMTools SNP 35211 35211 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1199 SAMTools SNP 38554 38554 35.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1199 SAMTools SNP 38683 38683 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.49%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C222:41 scaffold1199 SAMTools SNP 62032 62032 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1199 SAMTools SNP 62156 62156 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C18%2C0:32 scaffold1199 SAMTools SNP 119162 119162 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1199 SAMTools SNP 119710 119710 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C213:99 scaffold1199 SAMTools SNP 119888 119888 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1199 SAMTools SNP 120046 120046 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D59.5%3BPV4%3D0.024%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C96:89 scaffold1199 SAMTools SNP 120349 120349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 120519 120519 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 120709 120709 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C9%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.006%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1199 SAMTools SNP 120736 120736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 121144 121144 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 121164 121164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C29%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1199 SAMTools SNP 121530 121530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C58%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1199 SAMTools SNP 121587 121587 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C40%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1199 SAMTools SNP 122185 122185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1199 SAMTools SNP 122963 122963 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.3%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 123005 123005 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 123206 123206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C11%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 123420 123420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C20%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1199 SAMTools SNP 123426 123426 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.11%2C0.036%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1199 SAMTools SNP 123441 123441 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1199 SAMTools SNP 126452 126452 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1199 SAMTools SNP 126767 126767 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C0%2C94%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 128184 128184 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1199 SAMTools SNP 128213 128213 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1199 SAMTools SNP 128301 128301 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1199 SAMTools SNP 128385 128385 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C255%2C0:99 scaffold1199 SAMTools SNP 128496 128496 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C73%2C18%2C19%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.046%2C1.5e-64%2C1%2C8.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1199 SAMTools SNP 132979 132979 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C60%2C4%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00056%2C0.19%2C1%2C4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1199 SAMTools SNP 134005 134005 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 134045 134045 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 135082 135082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1199 SAMTools SNP 135119 135119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C14%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1199 SAMTools SNP 135662 135662 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1199 SAMTools SNP 135664 135664 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1199 SAMTools SNP 135700 135700 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1199 SAMTools SNP 136254 136254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1199 SAMTools SNP 136338 136338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1199 SAMTools SNP 136899 136899 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1199 SAMTools SNP 137131 137131 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold1199 SAMTools SNP 137810 137810 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1199 SAMTools SNP 137837 137837 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1199 SAMTools SNP 137843 137843 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.048%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C160:43 scaffold12 SAMTools SNP 1449 1449 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 1456 1456 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 19888 19888 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C10%2C1%3BMQ%3D49%3BFQ%3D48%3BPV4%3D1%2C8.4e-27%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold12 SAMTools SNP 32868 32868 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold12 SAMTools SNP 33465 33465 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C107:57 scaffold12 SAMTools SNP 33792 33792 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold12 SAMTools SNP 34172 34172 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold12 SAMTools SNP 34534 34534 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 34546 34546 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold12 SAMTools SNP 34906 34906 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C220:99 scaffold12 SAMTools SNP 37696 37696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold12 SAMTools SNP 39951 39951 52.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold12 SAMTools SNP 41146 41146 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold12 SAMTools SNP 53536 53536 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 53541 53541 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 58014 58014 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C20%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C252:99 scaffold12 SAMTools SNP 62133 62133 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D205%2C131%2C16%2C70%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold12 SAMTools SNP 62308 62308 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D609%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C167%2C84%2C343%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 62753 62753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold12 SAMTools SNP 62770 62770 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C69%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold12 SAMTools SNP 63251 63251 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 66669 66669 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C151%3BMQ%3D0%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C255%2C0:99 scaffold12 SAMTools SNP 69511 69511 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C252%3BMQ%3D1%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C255%2C0:99 scaffold12 SAMTools SNP 69557 69557 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D13%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C45%2C0:81 scaffold12 SAMTools SNP 69914 69914 30.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold12 SAMTools SNP 73308 73308 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 74067 74067 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold12 SAMTools SNP 74138 74138 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold12 SAMTools SNP 74206 74206 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold12 SAMTools SNP 76502 76502 14.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D17%3BFQ%3D-34%3BPV4%3D1%2C0.26%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C7%2C0:11 scaffold12 SAMTools SNP 76686 76686 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C10%2C0:17 scaffold12 SAMTools SNP 82468 82468 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C57%2C0:99 scaffold12 SAMTools SNP 82646 82646 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C132%2C13%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 82659 82659 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 82915 82915 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C52%2C7%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.56%2C0.045%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold12 SAMTools SNP 83434 83434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C42%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 83561 83561 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C41%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold12 SAMTools SNP 84592 84592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C58%3BMQ%3D43%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold12 SAMTools SNP 85962 85962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 86681 86681 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 86786 86786 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 86807 86807 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold12 SAMTools SNP 86967 86967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C6%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 101184 101184 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.21%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold12 SAMTools SNP 102890 102890 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold12 SAMTools SNP 104871 104871 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.39%2C5.1e-29%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C252:87 scaffold12 SAMTools SNP 105408 105408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold12 SAMTools SNP 113263 113263 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C41%2C19%2C25%3BMQ%3D31%3BFQ%3D180%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold12 SAMTools SNP 113278 113278 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C83%2C16%2C25%3BMQ%3D35%3BFQ%3D128%3BPV4%3D1.5e-05%2C1%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold12 SAMTools SNP 113367 113367 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold12 SAMTools SNP 113370 113370 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C2%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold12 SAMTools SNP 113425 113425 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0046%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold12 SAMTools SNP 113430 113430 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold12 SAMTools SNP 114601 114601 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C55%2C20%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D2.2e-08%2C1%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold12 SAMTools SNP 115229 115229 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C26%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C1.5e-28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C186:39 scaffold12 SAMTools SNP 115740 115740 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.012%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 116683 116683 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.0014%2C6.4e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold12 SAMTools SNP 116843 116843 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C17%2C25%2C10%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.82%2C1.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold12 SAMTools SNP 116905 116905 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 117014 117014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C242%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 117032 117032 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C94%2C115%2C78%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.48%2C7.9e-277%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold12 SAMTools SNP 117125 117125 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C128%2C4%2C120%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.26%2C8.4e-145%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold12 SAMTools SNP 121340 121340 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 121348 121348 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 123524 123524 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C2%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.17%2C0.00069%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold12 SAMTools SNP 124193 124193 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C30%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold12 SAMTools SNP 124254 124254 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold12 SAMTools SNP 124663 124663 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C51%2C0:99 scaffold12 SAMTools SNP 124751 124751 15.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold12 SAMTools SNP 125269 125269 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold12 SAMTools SNP 125765 125765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold12 SAMTools SNP 125846 125846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold12 SAMTools SNP 126917 126917 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold12 SAMTools SNP 126950 126950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.36%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold12 SAMTools SNP 127977 127977 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C210:70 scaffold12 SAMTools SNP 127981 127981 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C210:70 scaffold12 SAMTools SNP 127999 127999 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold12 SAMTools SNP 128568 128568 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold12 SAMTools SNP 128586 128586 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold12 SAMTools SNP 128931 128931 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold12 SAMTools SNP 129272 129272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold12 SAMTools SNP 129519 129519 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.28%2C0.2%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold12 SAMTools SNP 130313 130313 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.029%2C0.23%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold12 SAMTools SNP 130315 130315 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.029%2C0.00017%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold12 SAMTools SNP 131107 131107 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold12 SAMTools SNP 131644 131644 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 131654 131654 31.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold12 SAMTools SNP 131704 131704 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold12 SAMTools SNP 131731 131731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold12 SAMTools SNP 131986 131986 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold12 SAMTools SNP 131995 131995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold12 SAMTools SNP 132358 132358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold12 SAMTools SNP 132875 132875 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold12 SAMTools SNP 132887 132887 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 132938 132938 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold12 SAMTools SNP 133290 133290 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.6%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold12 SAMTools SNP 133302 133302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.48%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold12 SAMTools SNP 134188 134188 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold12 SAMTools SNP 134241 134241 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold12 SAMTools SNP 134492 134492 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold12 SAMTools SNP 134526 134526 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold12 SAMTools SNP 134821 134821 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold12 SAMTools SNP 135136 135136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold12 SAMTools SNP 135154 135154 171 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C51%2C232%2C0%2C226:69 scaffold12 SAMTools SNP 138868 138868 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold12 SAMTools SNP 138898 138898 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold12 SAMTools SNP 138899 138899 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00034%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold12 SAMTools SNP 139347 139347 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold12 SAMTools SNP 139448 139448 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 139667 139667 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold12 SAMTools SNP 140160 140160 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold12 SAMTools SNP 140968 140968 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold12 SAMTools SNP 140971 140971 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.49%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold12 SAMTools SNP 141013 141013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 141058 141058 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 171384 171384 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 172820 172820 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold12 SAMTools SNP 182479 182479 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold12 SAMTools SNP 182524 182524 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold12 SAMTools SNP 182677 182677 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold12 SAMTools SNP 183129 183129 226 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold12 SAMTools SNP 183796 183796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold12 SAMTools SNP 183841 183841 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold12 SAMTools SNP 184384 184384 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold12 SAMTools SNP 184429 184429 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold12 SAMTools SNP 185136 185136 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold12 SAMTools SNP 198517 198517 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C5%3BMQ%3D45%3BFQ%3D54%3BPV4%3D0.1%2C0.0055%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C206:84 scaffold12 SAMTools SNP 198545 198545 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C6%3BMQ%3D47%3BFQ%3D139%3BPV4%3D0.41%2C1%2C0.04%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C203:99 scaffold12 SAMTools SNP 199013 199013 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D47%3BFQ%3D13.2%3BPV4%3D1%2C0.0014%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold12 SAMTools SNP 199021 199021 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C0.055%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C168:69 scaffold12 SAMTools SNP 199090 199090 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold12 SAMTools SNP 200404 200404 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C33%2C0:63 scaffold12 SAMTools SNP 203320 203320 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold12 SAMTools SNP 213467 213467 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold12 SAMTools SNP 240630 240630 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold12 SAMTools SNP 240640 240640 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C88:40 scaffold12 SAMTools SNP 250167 250167 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold12 SAMTools SNP 250178 250178 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold12 SAMTools SNP 255066 255066 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.036%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C35:38 scaffold12 SAMTools SNP 255344 255344 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold12 SAMTools SNP 272925 272925 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C195:74 scaffold12 SAMTools SNP 274401 274401 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold12 SAMTools SNP 275378 275378 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold12 SAMTools SNP 278600 278600 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold12 SAMTools SNP 280113 280113 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C21%2C0:39 scaffold12 SAMTools SNP 286457 286457 56.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D46%3BFQ%3D-39%3BPV4%3D1%2C2.3e-09%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold12 SAMTools SNP 286783 286783 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C21%3BMQ%3D41%3BFQ%3D41%3BPV4%3D0.12%2C0.0016%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold12 SAMTools SNP 290394 290394 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C53%2C3%3BMQ%3D36%3BFQ%3D27%3BPV4%3D2.3e-18%2C4.1e-82%2C1%2C4.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C54:57 scaffold12 SAMTools SNP 290478 290478 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D51%2C6%2C7%2C1%3BMQ%3D18%3BFQ%3D-121%3BPV4%3D1%2C2e-61%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C94%2C0:81 scaffold12 SAMTools SNP 290836 290836 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C32%3BMQ%3D22%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C163%2C0:99 scaffold12 SAMTools SNP 291298 291298 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C12%2C7%3BMQ%3D23%3BFQ%3D46%3BPV4%3D0.38%2C1%2C0.25%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C167:76 scaffold12 SAMTools SNP 292912 292912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C81%3BMQ%3D32%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 293594 293594 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold12 SAMTools SNP 293596 293596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold12 SAMTools SNP 294107 294107 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C33%2C12%2C11%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold12 SAMTools SNP 294217 294217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 294895 294895 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold12 SAMTools SNP 294898 294898 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold12 SAMTools SNP 294937 294937 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0221%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold12 SAMTools SNP 295321 295321 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 295442 295442 92.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C21%2C0:39 scaffold12 SAMTools SNP 295571 295571 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold12 SAMTools SNP 295578 295578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold12 SAMTools SNP 295628 295628 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C46%2C9%2C25%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0052%2C2.6e-07%2C1%2C1.1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold12 SAMTools SNP 299713 299713 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold12 SAMTools SNP 299761 299761 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold12 SAMTools SNP 300776 300776 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0003%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C35:38 scaffold12 SAMTools SNP 301189 301189 19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold12 SAMTools SNP 301255 301255 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold12 SAMTools SNP 304252 304252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C70%2C86%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 304934 304934 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C64%2C2%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.35%2C0.26%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold12 SAMTools SNP 305737 305737 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold12 SAMTools SNP 305782 305782 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C37%2C10%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.025%2C1.8e-08%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold12 SAMTools SNP 305791 305791 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold12 SAMTools SNP 305830 305830 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C15%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 306575 306575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C45%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 306650 306650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0093%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 307285 307285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C27%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 307294 307294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C21%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 307303 307303 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C24%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 308326 308326 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C142%2C43%2C201%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C2.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 308786 308786 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C174%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 308790 308790 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C123%2C15%2C13%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0067%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold12 SAMTools SNP 308823 308823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C41%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold12 SAMTools SNP 309325 309325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C27%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold12 SAMTools SNP 309432 309432 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold12 SAMTools SNP 310057 310057 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C1%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold12 SAMTools SNP 310113 310113 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C28%2C32%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 310468 310468 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C45%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 310675 310675 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold12 SAMTools SNP 310885 310885 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C11%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.33%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 310912 310912 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 310970 310970 28.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold12 SAMTools SNP 310985 310985 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold12 SAMTools SNP 311422 311422 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C16%2C2%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 312647 312647 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C65%2C5%3BMQ%3D49%3BFQ%3D-135%3BPV4%3D1%2C0.36%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold12 SAMTools SNP 313070 313070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C21%2C22%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.024%2C0.28%2C0.0089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 313278 313278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 313971 313971 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold12 SAMTools SNP 314035 314035 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C15%2C12%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold12 SAMTools SNP 314539 314539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C106%2C119%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.23%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 315016 315016 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 315265 315265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C20%2C43%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 315534 315534 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C62%2C5%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 315549 315549 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C55%2C26%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 316045 316045 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 318343 318343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C23%2C25%2C25%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00015%2C0.2%2C0.0057%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 318418 318418 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold12 SAMTools SNP 319566 319566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C4%2C53%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 330918 330918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 331434 331434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 334821 334821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C34%3BMQ%3D49%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold12 SAMTools SNP 334859 334859 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 334892 334892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C19%2C49%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 335212 335212 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C194%2C12%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-07%2C1%2C1%2C7.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 335213 335213 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C194%2C10%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-07%2C0.44%2C1%2C7.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 335509 335509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C15%2C38%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C62%2C0:99 scaffold12 SAMTools SNP 338036 338036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 338803 338803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C28%2C21%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 338836 338836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 340941 340941 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 340988 340988 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold12 SAMTools SNP 341020 341020 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C5%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold12 SAMTools SNP 342363 342363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold12 SAMTools SNP 342928 342928 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C12%2C191%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 342937 342937 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D191%2C31%2C69%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.06%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold12 SAMTools SNP 343566 343566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C190%2C29%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 343608 343608 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C201%2C37%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 344038 344038 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C33%2C16%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 344059 344059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C12%2C17%2C43%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.5e-09%2C1%2C0.017%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 344514 344514 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C50%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C0.019%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 344522 344522 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C51%2C7%2C14%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.15%2C0.074%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold12 SAMTools SNP 344622 344622 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C68%2C3%2C10%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.012%2C7.4e-11%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C247:99 scaffold12 SAMTools SNP 344775 344775 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold12 SAMTools SNP 344778 344778 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold12 SAMTools SNP 345419 345419 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold12 SAMTools SNP 345439 345439 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.02%2C0.009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold12 SAMTools SNP 345475 345475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold12 SAMTools SNP 345917 345917 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C44%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold12 SAMTools SNP 345941 345941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C82%2C71%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-32%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 346201 346201 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C48%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-10%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 346221 346221 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C60%2C0%2C18%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.00063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold12 SAMTools SNP 346287 346287 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 347214 347214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 348023 348023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C50%2C39%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C3.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 348029 348029 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C48%2C50%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C4.7e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 348059 348059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C189%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 350111 350111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C97%2C30%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.00016%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 350114 350114 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 350598 350598 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C45%2C1%2C10%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold12 SAMTools SNP 350607 350607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 350816 350816 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold12 SAMTools SNP 350830 350830 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold12 SAMTools SNP 350860 350860 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C22%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0053%2C0.017%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C95:98 scaffold12 SAMTools SNP 350875 350875 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C38%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.016%2C0.33%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold12 SAMTools SNP 350937 350937 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0324%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D84%2C14%2C14%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C0.28%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold12 SAMTools SNP 351142 351142 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C12%2C38%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 351233 351233 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C67%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.2%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold12 SAMTools SNP 351240 351240 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C11%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C4.3e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 352307 352307 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C32%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 352361 352361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C77%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 352905 352905 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C59%2C0%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold12 SAMTools SNP 353007 353007 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C22%2C35%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C1%2C1%2C5.3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold12 SAMTools SNP 353707 353707 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1184%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C4.4e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C20:23 scaffold12 SAMTools SNP 354275 354275 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1111%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C1049%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 354365 354365 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.9e-05%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C216:66 scaffold12 SAMTools SNP 354371 354371 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0051%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C93:65 scaffold12 SAMTools SNP 355007 355007 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C46%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.66%2C1.5e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold12 SAMTools SNP 357965 357965 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold12 SAMTools SNP 357968 357968 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold12 SAMTools SNP 357969 357969 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold12 SAMTools SNP 358255 358255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold12 SAMTools SNP 358535 358535 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 358553 358553 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold12 SAMTools SNP 359282 359282 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C126:99 scaffold12 SAMTools SNP 360765 360765 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C152:99 scaffold12 SAMTools SNP 362368 362368 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold12 SAMTools SNP 362737 362737 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.62%2C0.081%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold12 SAMTools SNP 363045 363045 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold12 SAMTools SNP 363096 363096 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold12 SAMTools SNP 363252 363252 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C52%2C13%3BMQ%3D50%3BFQ%3D-129%3BPV4%3D1%2C5.1e-13%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C102%2C0:99 scaffold12 SAMTools SNP 363360 363360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C28%3BMQ%3D49%3BFQ%3D175%3BPV4%3D0.0079%2C1%2C0.31%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold12 SAMTools SNP 363378 363378 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C54%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold12 SAMTools SNP 368046 368046 23.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold12 SAMTools SNP 369140 369140 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold12 SAMTools SNP 375412 375412 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold12 SAMTools SNP 378256 378256 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C232:28 scaffold12 SAMTools SNP 379579 379579 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.01%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold12 SAMTools SNP 380190 380190 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold12 SAMTools SNP 380262 380262 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold12 SAMTools SNP 380266 380266 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold12 SAMTools SNP 380510 380510 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C10%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.02%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold12 SAMTools SNP 384822 384822 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 385428 385428 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.57%2C9.5e-05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold12 SAMTools SNP 386031 386031 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold12 SAMTools SNP 386249 386249 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold12 SAMTools SNP 386258 386258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold12 SAMTools SNP 386352 386352 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C8%2C0%3BMQ%3D49%3BFQ%3D57%3BPV4%3D0.015%2C0.18%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold12 SAMTools SNP 386723 386723 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.36%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 386739 386739 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C32%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 387918 387918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 388996 388996 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.33%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold12 SAMTools SNP 389328 389328 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold12 SAMTools SNP 389361 389361 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold12 SAMTools SNP 389829 389829 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.47%2C0.2%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C241:99 scaffold12 SAMTools SNP 390983 390983 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold12 SAMTools SNP 408932 408932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold12 SAMTools SNP 409196 409196 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold12 SAMTools SNP 409450 409450 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold12 SAMTools SNP 409468 409468 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C30%2C0:57 scaffold12 SAMTools SNP 409633 409633 6.21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5024%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-7.89%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C20:25 scaffold12 SAMTools SNP 414579 414579 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 415803 415803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold12 SAMTools SNP 415848 415848 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold12 SAMTools SNP 415860 415860 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.0031%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold12 SAMTools SNP 415862 415862 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold12 SAMTools SNP 416326 416326 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 422391 422391 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 425138 425138 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 425842 425842 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 434084 434084 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 436113 436113 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold12 SAMTools SNP 436118 436118 92 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C117%2C63%2C154%2C0%2C115:99 scaffold12 SAMTools SNP 436135 436135 35.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C10:13 scaffold12 SAMTools SNP 436175 436175 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C3%2C22%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.6e-31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold12 SAMTools SNP 437694 437694 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 437716 437716 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold12 SAMTools SNP 437766 437766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C2%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 437931 437931 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.43%2C0.0048%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold12 SAMTools SNP 437952 437952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C20%3BMQ%3D50%3BFQ%3D152%3BPV4%3D5.1e-05%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold12 SAMTools SNP 438166 438166 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C8%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D9.4e-08%2C1.5e-11%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C238:99 scaffold12 SAMTools SNP 438175 438175 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C32%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1.7e-05%2C6.2e-13%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C220:36 scaffold12 SAMTools SNP 438184 438184 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold12 SAMTools SNP 438365 438365 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold12 SAMTools SNP 438395 438395 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold12 SAMTools SNP 438434 438434 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 438585 438585 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold12 SAMTools SNP 438592 438592 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold12 SAMTools SNP 438603 438603 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold12 SAMTools SNP 439148 439148 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold12 SAMTools SNP 442159 442159 6.97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D3%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C84%2C0:51 scaffold12 SAMTools SNP 443151 443151 10.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D0.2%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C8%2C0:11 scaffold12 SAMTools SNP 443661 443661 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C20%2C0%3BMQ%3D49%3BFQ%3D212%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C244:99 scaffold12 SAMTools SNP 443710 443710 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C2%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold12 SAMTools SNP 445333 445333 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C10%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold12 SAMTools SNP 445827 445827 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C245:99 scaffold12 SAMTools SNP 445836 445836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C20%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.085%2C0.28%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold12 SAMTools SNP 446708 446708 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold12 SAMTools SNP 446717 446717 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold12 SAMTools SNP 447238 447238 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 447241 447241 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 447265 447265 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold12 SAMTools SNP 447277 447277 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold12 SAMTools SNP 447826 447826 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold12 SAMTools SNP 447862 447862 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold12 SAMTools SNP 447877 447877 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold12 SAMTools SNP 448018 448018 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 448025 448025 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold12 SAMTools SNP 448518 448518 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 448527 448527 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C55%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00053%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 448976 448976 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C58%2C38%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 449015 449015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C233%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 449348 449348 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 454078 454078 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold12 SAMTools SNP 454129 454129 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C171%2C147:45 scaffold12 SAMTools SNP 454156 454156 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C252:99 scaffold12 SAMTools SNP 455513 455513 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold12 SAMTools SNP 459545 459545 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold12 SAMTools SNP 459548 459548 28.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold12 SAMTools SNP 461990 461990 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C35:38 scaffold12 SAMTools SNP 462742 462742 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold12 SAMTools SNP 463578 463578 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold12 SAMTools SNP 463805 463805 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C0.00034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C127:33 scaffold12 SAMTools SNP 464270 464270 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold12 SAMTools SNP 464296 464296 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold12 SAMTools SNP 468897 468897 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 468902 468902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 528203 528203 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C19%3BMQ%3D9%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C255%2C0:99 scaffold12 SAMTools SNP 528238 528238 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C50%3BMQ%3D13%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C151%2C0:99 scaffold12 SAMTools SNP 528358 528358 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C0%2C26%3BMQ%3D38%3BFQ%3D103%3BPV4%3D1.1e-09%2C1.9e-10%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C223:99 scaffold12 SAMTools SNP 528385 528385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold12 SAMTools SNP 529598 529598 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C12%2C45%3BMQ%3D42%3BFQ%3D-172%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold12 SAMTools SNP 530906 530906 6.19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C40%2C4%3BMQ%3D8%3BFQ%3D-112%3BPV4%3D0.43%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C85%2C0:48 scaffold12 SAMTools SNP 532661 532661 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold12 SAMTools SNP 532688 532688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C267%2C0%2C195%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold12 SAMTools SNP 532716 532716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold12 SAMTools SNP 532746 532746 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold120 SAMTools SNP 448 448 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 824 824 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 30946 30946 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold120 SAMTools SNP 32715 32715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold120 SAMTools SNP 33141 33141 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold120 SAMTools SNP 33302 33302 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.25%2C0.013%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold120 SAMTools SNP 33804 33804 27.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C17:20 scaffold120 SAMTools SNP 34068 34068 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C7%2C31%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.78%2C5e-52%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold120 SAMTools SNP 38239 38239 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold120 SAMTools SNP 38256 38256 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold120 SAMTools SNP 43746 43746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 43758 43758 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 46832 46832 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.069%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold120 SAMTools SNP 46836 46836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 47199 47199 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C2%2C47%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C5.6e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold120 SAMTools SNP 47310 47310 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.1e-27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold120 SAMTools SNP 47434 47434 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C24%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.04%2C3.8e-39%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold120 SAMTools SNP 48196 48196 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.049%2C5.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold120 SAMTools SNP 54310 54310 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 66985 66985 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold120 SAMTools SNP 75963 75963 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 108832 108832 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold120 SAMTools SNP 108859 108859 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold120 SAMTools SNP 109256 109256 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 109260 109260 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 150647 150647 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 150716 150716 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C112%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 153503 153503 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold120 SAMTools SNP 153509 153509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold120 SAMTools SNP 153513 153513 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D4.6e-05%2C0.019%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold120 SAMTools SNP 153528 153528 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C52%2C6%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-05%2C0.35%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 154623 154623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C43%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 154650 154650 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C51%2C52%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D2.6e-13%2C1.4e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold120 SAMTools SNP 156304 156304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C47%2C15%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 156319 156319 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C48%2C11%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 158010 158010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 159575 159575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C28%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold120 SAMTools SNP 159799 159799 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C87%2C0:99 scaffold120 SAMTools SNP 160289 160289 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold120 SAMTools SNP 162013 162013 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold120 SAMTools SNP 162169 162169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold120 SAMTools SNP 162220 162220 188 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.48%2C0.32%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold120 SAMTools SNP 162228 162228 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.49%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold120 SAMTools SNP 162623 162623 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold120 SAMTools SNP 165674 165674 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D33%3BPV4%3D3.6e-06%2C7.2e-42%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C188:63 scaffold120 SAMTools SNP 165742 165742 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C51%2C0:99 scaffold120 SAMTools SNP 165945 165945 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 166241 166241 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold120 SAMTools SNP 167411 167411 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold120 SAMTools SNP 167655 167655 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold120 SAMTools SNP 167661 167661 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C0.45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold120 SAMTools SNP 167725 167725 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold120 SAMTools SNP 167727 167727 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold120 SAMTools SNP 168618 168618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold120 SAMTools SNP 168651 168651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C15%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold120 SAMTools SNP 169376 169376 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C26%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.49%2C0.37%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold120 SAMTools SNP 169448 169448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.031%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 170032 170032 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C27%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.48%2C0.38%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold120 SAMTools SNP 170080 170080 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold120 SAMTools SNP 170348 170348 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C23%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 171255 171255 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C31%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold120 SAMTools SNP 171559 171559 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C255%2C0:99 scaffold120 SAMTools SNP 171895 171895 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 172003 172003 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C167%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 176510 176510 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C48%2C0:93 scaffold120 SAMTools SNP 176576 176576 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.16%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C222:99 scaffold120 SAMTools SNP 176597 176597 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.094%2C0.32%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold120 SAMTools SNP 177095 177095 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.033%2C0.00062%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold120 SAMTools SNP 177275 177275 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C127:67 scaffold120 SAMTools SNP 177960 177960 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 178979 178979 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold120 SAMTools SNP 179415 179415 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold120 SAMTools SNP 179830 179830 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold120 SAMTools SNP 191430 191430 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold120 SAMTools SNP 191725 191725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C4%2C143%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 191794 191794 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold120 SAMTools SNP 195263 195263 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold120 SAMTools SNP 195284 195284 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold120 SAMTools SNP 200489 200489 28.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold120 SAMTools SNP 202928 202928 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C2%2C10%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.017%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold120 SAMTools SNP 205064 205064 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C2%2C6%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.25%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold120 SAMTools SNP 208997 208997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C6%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 209251 209251 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 209344 209344 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C60%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.13%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 209599 209599 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 209921 209921 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C46%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold120 SAMTools SNP 209977 209977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold120 SAMTools SNP 209978 209978 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold120 SAMTools SNP 210011 210011 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 210233 210233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 210257 210257 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 210260 210260 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 210261 210261 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold120 SAMTools SNP 210643 210643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold120 SAMTools SNP 211582 211582 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C9%2C0:16 scaffold120 SAMTools SNP 211615 211615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold120 SAMTools SNP 211659 211659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 211949 211949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.35%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 212003 212003 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C198%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 212278 212278 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C12%2C8%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.11%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold120 SAMTools SNP 212544 212544 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C60%2C11%2C8%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold120 SAMTools SNP 212613 212613 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C64%2C15%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D2e-06%2C0.0065%2C1%2C9.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold120 SAMTools SNP 212938 212938 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.46%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 213803 213803 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold120 SAMTools SNP 213809 213809 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold120 SAMTools SNP 214599 214599 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 214698 214698 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold120 SAMTools SNP 214905 214905 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C28%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold120 SAMTools SNP 215499 215499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C38%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold120 SAMTools SNP 215928 215928 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold120 SAMTools SNP 215952 215952 99.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold120 SAMTools SNP 215973 215973 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 215991 215991 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 218438 218438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 218517 218517 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 220606 220606 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold120 SAMTools SNP 221710 221710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold120 SAMTools SNP 221719 221719 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 221989 221989 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 222179 222179 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 229899 229899 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold120 SAMTools SNP 231874 231874 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold120 SAMTools SNP 231977 231977 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold120 SAMTools SNP 232067 232067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 232190 232190 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold120 SAMTools SNP 232921 232921 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.22%2C0.38%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold120 SAMTools SNP 236136 236136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold120 SAMTools SNP 236921 236921 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold120 SAMTools SNP 236949 236949 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold120 SAMTools SNP 245295 245295 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 245359 245359 81.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold120 SAMTools SNP 245720 245720 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 245785 245785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 246344 246344 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.13%2C0.05%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C251:99 scaffold120 SAMTools SNP 246384 246384 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.067%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C142:99 scaffold120 SAMTools SNP 246421 246421 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold120 SAMTools SNP 254655 254655 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold120 SAMTools SNP 257091 257091 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold120 SAMTools SNP 258230 258230 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold120 SAMTools SNP 258877 258877 4.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold120 SAMTools SNP 261166 261166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 261551 261551 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 264747 264747 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C3.1e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C13%2C0:23 scaffold120 SAMTools SNP 265569 265569 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C27%2C0:51 scaffold120 SAMTools SNP 265620 265620 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0034%2C1%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold120 SAMTools SNP 266394 266394 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C38%2C57%2C56%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.76%2C5.5e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold120 SAMTools SNP 267034 267034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C14%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold120 SAMTools SNP 267097 267097 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C15%2C50%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold120 SAMTools SNP 267118 267118 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C13%2C50%2C1%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.036%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold120 SAMTools SNP 267364 267364 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C72%2C12%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.01%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold120 SAMTools SNP 267376 267376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C140%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 267645 267645 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C26%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 267717 267717 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C2%2C9%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.18%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold120 SAMTools SNP 268112 268112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C22%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold120 SAMTools SNP 268419 268419 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C40%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold120 SAMTools SNP 268599 268599 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.27%2C0.25%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold120 SAMTools SNP 268611 268611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold120 SAMTools SNP 268614 268614 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold120 SAMTools SNP 268929 268929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C3%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold120 SAMTools SNP 269399 269399 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 269652 269652 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.26%2C0.49%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold120 SAMTools SNP 269689 269689 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.096%2C0.00084%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold120 SAMTools SNP 269721 269721 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C66%2C0:99 scaffold120 SAMTools SNP 270612 270612 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold120 SAMTools SNP 270656 270656 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold120 SAMTools SNP 270774 270774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold120 SAMTools SNP 271251 271251 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold120 SAMTools SNP 271284 271284 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold120 SAMTools SNP 271389 271389 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C14:17 scaffold120 SAMTools SNP 271894 271894 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold120 SAMTools SNP 271927 271927 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold120 SAMTools SNP 271930 271930 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.4%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold120 SAMTools SNP 272292 272292 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold120 SAMTools SNP 272391 272391 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold120 SAMTools SNP 272394 272394 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C3%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00073%2C0.0014%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C225:70 scaffold120 SAMTools SNP 274233 274233 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C40:43 scaffold120 SAMTools SNP 274234 274234 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold120 SAMTools SNP 274255 274255 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold120 SAMTools SNP 275222 275222 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.44%2C0.096%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C207:99 scaffold120 SAMTools SNP 275252 275252 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold120 SAMTools SNP 275783 275783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C13%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold120 SAMTools SNP 276468 276468 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.41%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold120 SAMTools SNP 276557 276557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 276849 276849 222 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0%2C232%2C2%2C229:81 scaffold120 SAMTools SNP 277406 277406 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold120 SAMTools SNP 277682 277682 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.021%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C146:64 scaffold120 SAMTools SNP 277690 277690 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold120 SAMTools SNP 277695 277695 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C103:84 scaffold120 SAMTools SNP 277708 277708 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C69:36 scaffold120 SAMTools SNP 277726 277726 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold120 SAMTools SNP 277732 277732 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold120 SAMTools SNP 277747 277747 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold120 SAMTools SNP 277771 277771 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold120 SAMTools SNP 278183 278183 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.029%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold120 SAMTools SNP 278420 278420 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.43%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C168:99 scaffold120 SAMTools SNP 280068 280068 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 280200 280200 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 280451 280451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 280628 280628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 280763 280763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C21%2C73%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 281226 281226 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold120 SAMTools SNP 285137 285137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C14%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold120 SAMTools SNP 285293 285293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold120 SAMTools SNP 285301 285301 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold120 SAMTools SNP 286132 286132 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C15%2C0:27 scaffold120 SAMTools SNP 286153 286153 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C27%2C0:51 scaffold120 SAMTools SNP 286425 286425 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold120 SAMTools SNP 286616 286616 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold120 SAMTools SNP 286649 286649 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold120 SAMTools SNP 286685 286685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold120 SAMTools SNP 287107 287107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold120 SAMTools SNP 287119 287119 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C0.0073%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold120 SAMTools SNP 287140 287140 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold120 SAMTools SNP 287152 287152 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.12%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold120 SAMTools SNP 287339 287339 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.058%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold120 SAMTools SNP 287369 287369 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold120 SAMTools SNP 287390 287390 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold120 SAMTools SNP 287782 287782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold120 SAMTools SNP 287822 287822 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold120 SAMTools SNP 287864 287864 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00095%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold120 SAMTools SNP 287897 287897 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold120 SAMTools SNP 287924 287924 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 288372 288372 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold120 SAMTools SNP 288439 288439 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold120 SAMTools SNP 288767 288767 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold120 SAMTools SNP 288839 288839 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold120 SAMTools SNP 288869 288869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C69%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold120 SAMTools SNP 289423 289423 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C52%3BMQ%3D50%3BFQ%3D-167%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C140%2C0:99 scaffold120 SAMTools SNP 289787 289787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C10%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold120 SAMTools SNP 292659 292659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 292773 292773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold120 SAMTools SNP 293127 293127 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold120 SAMTools SNP 293130 293130 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C24%2C0:45 scaffold120 SAMTools SNP 293222 293222 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold120 SAMTools SNP 293777 293777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold120 SAMTools SNP 293797 293797 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C105%2C0:99 scaffold120 SAMTools SNP 295661 295661 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.24%2C0.49%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold120 SAMTools SNP 295689 295689 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold120 SAMTools SNP 295739 295739 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold120 SAMTools SNP 296514 296514 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold120 SAMTools SNP 296539 296539 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.14%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold120 SAMTools SNP 298648 298648 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C0%2C12%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.58%2C0.035%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold120 SAMTools SNP 305211 305211 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold120 SAMTools SNP 305226 305226 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold120 SAMTools SNP 338197 338197 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold120 SAMTools SNP 338955 338955 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold120 SAMTools SNP 352992 352992 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.3e-08%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C118:52 scaffold120 SAMTools SNP 353397 353397 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold120 SAMTools SNP 353418 353418 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold120 SAMTools SNP 354172 354172 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold120 SAMTools SNP 362536 362536 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold120 SAMTools SNP 389349 389349 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.37%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold120 SAMTools SNP 391557 391557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D49%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold120 SAMTools SNP 391566 391566 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.3%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold120 SAMTools SNP 391614 391614 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.019%2C0.17%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C243:99 scaffold120 SAMTools SNP 393186 393186 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold120 SAMTools SNP 393735 393735 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold120 SAMTools SNP 393883 393883 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.028%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold120 SAMTools SNP 394509 394509 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.014%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold120 SAMTools SNP 394720 394720 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C19%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C212:99 scaffold120 SAMTools SNP 398207 398207 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold120 SAMTools SNP 400575 400575 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C52%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 402306 402306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C77%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold120 SAMTools SNP 402387 402387 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C6.7e-37%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold120 SAMTools SNP 402454 402454 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C37%2C0%2C11%3BMQ%3D49%3BFQ%3D23%3BPV4%3D0.053%2C9.2e-07%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold120 SAMTools SNP 421019 421019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold120 SAMTools SNP 421484 421484 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold120 SAMTools SNP 421991 421991 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold120 SAMTools SNP 422072 422072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C13%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold120 SAMTools SNP 423081 423081 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C37%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold120 SAMTools SNP 423111 423111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold120 SAMTools SNP 427972 427972 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold120 SAMTools SNP 428008 428008 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold120 SAMTools SNP 428545 428545 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold120 SAMTools SNP 428720 428720 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold120 SAMTools SNP 430569 430569 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 431357 431357 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold120 SAMTools SNP 431382 431382 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold120 SAMTools SNP 432156 432156 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C60%2C0:99 scaffold120 SAMTools SNP 433750 433750 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold120 SAMTools SNP 434465 434465 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold120 SAMTools SNP 434474 434474 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold120 SAMTools SNP 434508 434508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold120 SAMTools SNP 434554 434554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold120 SAMTools SNP 435838 435838 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold120 SAMTools SNP 435847 435847 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.049%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold120 SAMTools SNP 436117 436117 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C95:98 scaffold120 SAMTools SNP 436143 436143 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold120 SAMTools SNP 436488 436488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold120 SAMTools SNP 439568 439568 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold120 SAMTools SNP 440318 440318 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold120 SAMTools SNP 440352 440352 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold120 SAMTools SNP 440551 440551 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold120 SAMTools SNP 440652 440652 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C185:99 scaffold120 SAMTools SNP 441718 441718 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.029%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C219:99 scaffold120 SAMTools SNP 441955 441955 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold120 SAMTools SNP 444862 444862 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.55%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold120 SAMTools SNP 444871 444871 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C0.19%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold120 SAMTools SNP 445237 445237 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold120 SAMTools SNP 445824 445824 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold120 SAMTools SNP 447415 447415 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C93%2C0:99 scaffold120 SAMTools SNP 456130 456130 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold120 SAMTools SNP 456546 456546 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.55%2C5.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C188:99 scaffold120 SAMTools SNP 456879 456879 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C24%2C0:45 scaffold120 SAMTools SNP 459660 459660 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold120 SAMTools SNP 476043 476043 44.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold120 SAMTools SNP 476206 476206 24.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold120 SAMTools SNP 498737 498737 40.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-45%3BPV4%3D1%2C9.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1200 SAMTools SNP 14543 14543 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 14723 14723 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1200 SAMTools SNP 37376 37376 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1200 SAMTools SNP 42421 42421 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 54666 54666 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 55100 55100 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1200 SAMTools SNP 61232 61232 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1200 SAMTools SNP 62456 62456 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 72313 72313 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 72403 72403 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1200 SAMTools SNP 88611 88611 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1200 SAMTools SNP 88733 88733 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1200 SAMTools SNP 91239 91239 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1200 SAMTools SNP 105617 105617 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1200 SAMTools SNP 105954 105954 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 111388 111388 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1200 SAMTools SNP 113821 113821 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.16%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1200 SAMTools SNP 116689 116689 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C96:40 scaffold1200 SAMTools SNP 117067 117067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 117176 117176 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 119992 119992 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.11%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C208:53 scaffold1200 SAMTools SNP 120012 120012 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1200 SAMTools SNP 120052 120052 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 120199 120199 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1200 SAMTools SNP 120223 120223 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold1200 SAMTools SNP 120248 120248 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1200 SAMTools SNP 120628 120628 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1200 SAMTools SNP 121979 121979 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00044%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C124:42 scaffold1200 SAMTools SNP 122996 122996 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1200 SAMTools SNP 136134 136134 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C63:66 scaffold1200 SAMTools SNP 136638 136638 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1200 SAMTools SNP 144264 144264 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1200 SAMTools SNP 144503 144503 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1200 SAMTools SNP 144752 144752 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold1200 SAMTools SNP 144803 144803 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.42%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1200 SAMTools SNP 144851 144851 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C19%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0087%2C0.36%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C185:99 scaffold1200 SAMTools SNP 144860 144860 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0087%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold1200 SAMTools SNP 145077 145077 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C19%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C152:99 scaffold1200 SAMTools SNP 145123 145123 80.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold1200 SAMTools SNP 145176 145176 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1200 SAMTools SNP 145351 145351 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold1200 SAMTools SNP 145513 145513 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.049%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1200 SAMTools SNP 145536 145536 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1200 SAMTools SNP 145572 145572 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C58%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1200 SAMTools SNP 145764 145764 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1200 SAMTools SNP 145852 145852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 146358 146358 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.036%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1200 SAMTools SNP 146365 146365 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.21%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1200 SAMTools SNP 146380 146380 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1200 SAMTools SNP 146692 146692 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1200 SAMTools SNP 147405 147405 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1200 SAMTools SNP 150834 150834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1200 SAMTools SNP 151449 151449 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.12%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1200 SAMTools SNP 151860 151860 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C9%3BMQ%3D45%3BFQ%3D178%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1200 SAMTools SNP 152053 152053 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1200 SAMTools SNP 152246 152246 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C8%2C0%3BMQ%3D47%3BFQ%3D44%3BPV4%3D0.3%2C0.0022%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1200 SAMTools SNP 152331 152331 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C19%3BMQ%3D45%3BFQ%3D-30%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C3%2C0:6 scaffold1200 SAMTools SNP 152612 152612 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1200 SAMTools SNP 152616 152616 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1200 SAMTools SNP 164411 164411 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 2179 2179 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1203 SAMTools SNP 3903 3903 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1203 SAMTools SNP 5941 5941 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C17%2C22%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 6289 6289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C57%2C18%2C46%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.027%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 6369 6369 92.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1203 SAMTools SNP 6572 6572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C9%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 6813 6813 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C12%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1203 SAMTools SNP 7185 7185 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D3.6e-07%2C0.44%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1203 SAMTools SNP 7195 7195 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1.6e-05%2C0.066%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1203 SAMTools SNP 7374 7374 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C243:99 scaffold1203 SAMTools SNP 7407 7407 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1203 SAMTools SNP 9128 9128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1203 SAMTools SNP 9152 9152 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C21%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 9749 9749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 9815 9815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C24%2C23%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.025%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 9951 9951 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.00066%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 10249 10249 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C5%2C79%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 10330 10330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C114%2C8%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 12080 12080 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1203 SAMTools SNP 12363 12363 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C2.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C169:99 scaffold1203 SAMTools SNP 12408 12408 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.9e-14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C236:71 scaffold1203 SAMTools SNP 12531 12531 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.43%2C2.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1203 SAMTools SNP 13190 13190 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.14%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C107:55 scaffold1203 SAMTools SNP 13643 13643 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1203 SAMTools SNP 13865 13865 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.58%2C8.7e-20%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1203 SAMTools SNP 18149 18149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C104%2C46%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 19834 19834 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1203 SAMTools SNP 21298 21298 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D631%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C238%2C28%2C204%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-13%2C9.6e-15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 22755 22755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1203 SAMTools SNP 22781 22781 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1203 SAMTools SNP 23597 23597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C26%2C30%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 24244 24244 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C30%2C36%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 24415 24415 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C136%2C201%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C2.3e-93%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 24757 24757 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1203 SAMTools SNP 27601 27601 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.29%2C0.0021%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1203 SAMTools SNP 27872 27872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C84%2C0%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.048%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 39218 39218 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C9.6e-05%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C124:97 scaffold1203 SAMTools SNP 39335 39335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1203 SAMTools SNP 39428 39428 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C4%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C5.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1203 SAMTools SNP 39701 39701 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.63%2C5e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1203 SAMTools SNP 39809 39809 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C19%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C105%2C0:99 scaffold1203 SAMTools SNP 39917 39917 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.47%2C7.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C203:93 scaffold1203 SAMTools SNP 40115 40115 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.71%2C7.3e-22%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1203 SAMTools SNP 40252 40252 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.07%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C227:61 scaffold1203 SAMTools SNP 40457 40457 25.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C18:21 scaffold1203 SAMTools SNP 40485 40485 49.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1203 SAMTools SNP 40502 40502 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C3%2C23%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.098%2C4.5e-18%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1203 SAMTools SNP 41060 41060 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C9.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C240:39 scaffold1203 SAMTools SNP 41126 41126 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.29%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1203 SAMTools SNP 42936 42936 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1203 SAMTools SNP 42968 42968 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C228:99 scaffold1203 SAMTools SNP 42974 42974 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C0.23%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C138:99 scaffold1203 SAMTools SNP 51260 51260 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1203 SAMTools SNP 53401 53401 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C33%2C0:63 scaffold1203 SAMTools SNP 59700 59700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C3%2C11%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1203 SAMTools SNP 59731 59731 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1203 SAMTools SNP 59751 59751 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1203 SAMTools SNP 59790 59790 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C30%2C0:57 scaffold1203 SAMTools SNP 59856 59856 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1203 SAMTools SNP 59880 59880 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1203 SAMTools SNP 60228 60228 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1203 SAMTools SNP 60348 60348 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1203 SAMTools SNP 61527 61527 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C55%2C0%2C44%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0029%2C3.6e-24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1203 SAMTools SNP 61979 61979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1203 SAMTools SNP 62006 62006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1203 SAMTools SNP 62494 62494 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C4%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.077%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1203 SAMTools SNP 62854 62854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C47%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 63446 63446 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C79%2C32%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1.5e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 63824 63824 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C26%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1203 SAMTools SNP 64207 64207 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 64704 64704 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1203 SAMTools SNP 64744 64744 52.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.1%2C1.9e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C10%2C0:17 scaffold1203 SAMTools SNP 64830 64830 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1203 SAMTools SNP 64985 64985 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1203 SAMTools SNP 64993 64993 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold1203 SAMTools SNP 64994 64994 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C217:99 scaffold1203 SAMTools SNP 65039 65039 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1203 SAMTools SNP 65069 65069 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 65296 65296 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.06%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1203 SAMTools SNP 65591 65591 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1203 SAMTools SNP 65822 65822 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold1203 SAMTools SNP 67797 67797 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1203 SAMTools SNP 68170 68170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 73825 73825 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 74888 74888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1203 SAMTools SNP 74903 74903 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1203 SAMTools SNP 74963 74963 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 75329 75329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1203 SAMTools SNP 75397 75397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1203 SAMTools SNP 75463 75463 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1203 SAMTools SNP 76224 76224 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1203 SAMTools SNP 76317 76317 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C27%2C0:51 scaffold1203 SAMTools SNP 80250 80250 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D85.4%3BPV4%3D0.14%2C0.00035%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C121:99 scaffold1203 SAMTools SNP 80963 80963 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1203 SAMTools SNP 83002 83002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C25%2C44%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 84309 84309 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C51%2C30%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 85284 85284 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 85872 85872 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C2%2C10%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.48%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1203 SAMTools SNP 85897 85897 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 86225 86225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C41%2C25%2C33%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.86%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 87595 87595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C204%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1203 SAMTools SNP 102244 102244 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 116326 116326 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1203 SAMTools SNP 116986 116986 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1203 SAMTools SNP 117363 117363 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 117811 117811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1203 SAMTools SNP 117853 117853 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1203 SAMTools SNP 117857 117857 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1203 SAMTools SNP 120569 120569 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C12%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1203 SAMTools SNP 120956 120956 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1203 SAMTools SNP 121196 121196 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1203 SAMTools SNP 121442 121442 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 121603 121603 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1203 SAMTools SNP 121625 121625 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1203 SAMTools SNP 121655 121655 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1203 SAMTools SNP 121822 121822 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1203 SAMTools SNP 122133 122133 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold1203 SAMTools SNP 122448 122448 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1203 SAMTools SNP 122514 122514 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0019%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0048%2C6.6e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1203 SAMTools SNP 122736 122736 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1203 SAMTools SNP 122790 122790 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1203 SAMTools SNP 123261 123261 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.083%2C0.18%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C176:99 scaffold1203 SAMTools SNP 123271 123271 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1203 SAMTools SNP 123289 123289 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 123358 123358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1203 SAMTools SNP 123361 123361 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1203 SAMTools SNP 123583 123583 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1203 SAMTools SNP 123607 123607 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C62:65 scaffold1203 SAMTools SNP 123745 123745 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1203 SAMTools SNP 123793 123793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1203 SAMTools SNP 124067 124067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1203 SAMTools SNP 124103 124103 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1203 SAMTools SNP 124472 124472 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 124811 124811 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.085%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1203 SAMTools SNP 124837 124837 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1203 SAMTools SNP 125074 125074 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1203 SAMTools SNP 125254 125254 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C6%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C3.6e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1203 SAMTools SNP 126448 126448 63.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold1203 SAMTools SNP 126481 126481 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1203 SAMTools SNP 127134 127134 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C35:38 scaffold1203 SAMTools SNP 127137 127137 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1203 SAMTools SNP 127167 127167 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C4%3BMQ%3D44%3BFQ%3D41%3BPV4%3D0.032%2C1%2C0.0043%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C229:71 scaffold1203 SAMTools SNP 127359 127359 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1203 SAMTools SNP 127361 127361 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1203 SAMTools SNP 127364 127364 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 127620 127620 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1203 SAMTools SNP 127650 127650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.19%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1203 SAMTools SNP 128008 128008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1203 SAMTools SNP 128573 128573 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.58%2C0.47%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1203 SAMTools SNP 128815 128815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.22%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 128988 128988 138 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.21%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C179:99 scaffold1203 SAMTools SNP 129021 129021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1203 SAMTools SNP 129592 129592 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1203 SAMTools SNP 129820 129820 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.47%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1203 SAMTools SNP 130123 130123 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1203 SAMTools SNP 130313 130313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1203 SAMTools SNP 130777 130777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 130807 130807 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1203 SAMTools SNP 131000 131000 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.44%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 131191 131191 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C13%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.048%2C7.7e-06%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1203 SAMTools SNP 131225 131225 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 133866 133866 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1203 SAMTools SNP 133892 133892 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C64:43 scaffold1203 SAMTools SNP 135610 135610 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1203 SAMTools SNP 135636 135636 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1203 SAMTools SNP 136681 136681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C32%2C0:61 scaffold1203 SAMTools SNP 136944 136944 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1203 SAMTools SNP 137076 137076 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C56%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1203 SAMTools SNP 137521 137521 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold1203 SAMTools SNP 138038 138038 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1203 SAMTools SNP 138665 138665 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1203 SAMTools SNP 138728 138728 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1203 SAMTools SNP 138731 138731 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1203 SAMTools SNP 139078 139078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C5%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1203 SAMTools SNP 139174 139174 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C126%2C0:99 scaffold1203 SAMTools SNP 153294 153294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1203 SAMTools SNP 153725 153725 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C17%2C37%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 154335 154335 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.26%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 154971 154971 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.053%2C0.0016%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1203 SAMTools SNP 154975 154975 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.26%2C0.018%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1203 SAMTools SNP 154981 154981 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00025%2C3.7e-07%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C209:99 scaffold1203 SAMTools SNP 154984 154984 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0047%2C0.00017%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C219:89 scaffold1203 SAMTools SNP 155341 155341 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.17%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C219:71 scaffold1203 SAMTools SNP 163796 163796 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 164463 164463 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 165023 165023 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1203 SAMTools SNP 166436 166436 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.2%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1203 SAMTools SNP 166593 166593 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1203 SAMTools SNP 167042 167042 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C208:99 scaffold1203 SAMTools SNP 167060 167060 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.24%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1203 SAMTools SNP 167114 167114 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1203 SAMTools SNP 168540 168540 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1203 SAMTools SNP 168541 168541 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1203 SAMTools SNP 168609 168609 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.61%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1203 SAMTools SNP 169095 169095 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.034%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 169121 169121 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 169134 169134 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C254:99 scaffold1203 SAMTools SNP 169597 169597 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C16%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.67%2C9.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1203 SAMTools SNP 178605 178605 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1203 SAMTools SNP 179164 179164 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1203 SAMTools SNP 183030 183030 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C6%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.72%2C0.0022%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1203 SAMTools SNP 183048 183048 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.003%2C2.7e-05%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1203 SAMTools SNP 183061 183061 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C5%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 184216 184216 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C29%2C1%2C18%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0017%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1203 SAMTools SNP 187099 187099 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C45%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C193%2C0:99 scaffold1203 SAMTools SNP 187601 187601 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 189783 189783 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.063%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1203 SAMTools SNP 190427 190427 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C35%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 191850 191850 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C33%2C0:63 scaffold1203 SAMTools SNP 195054 195054 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C322%2C40%2C191%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 195121 195121 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C154%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1203 SAMTools SNP 195420 195420 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D569%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D220%2C35%2C231%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00025%2C4e-08%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 195428 195428 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D648%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D283%2C81%2C251%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 201264 201264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.23%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1203 SAMTools SNP 202265 202265 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1203 SAMTools SNP 202274 202274 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1203 SAMTools SNP 206363 206363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C22%2C5%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.56%2C1.5e-06%2C0.098%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1203 SAMTools SNP 206904 206904 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C17%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1.1e-08%2C9.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1203 SAMTools SNP 206917 206917 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.3%2C0.0034%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1203 SAMTools SNP 216772 216772 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 233184 233184 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 233407 233407 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1203 SAMTools SNP 233458 233458 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1203 SAMTools SNP 233497 233497 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1.2e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C74:77 scaffold1203 SAMTools SNP 235689 235689 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1203 SAMTools SNP 235758 235758 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1203 SAMTools SNP 242625 242625 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1203 SAMTools SNP 242650 242650 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1203 SAMTools SNP 245427 245427 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1203 SAMTools SNP 245446 245446 166 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C47%2C32%2C191%2C0%2C188:27 scaffold1203 SAMTools SNP 245476 245476 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1203 SAMTools SNP 245497 245497 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1203 SAMTools SNP 245694 245694 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1203 SAMTools SNP 245717 245717 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold1203 SAMTools SNP 246217 246217 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1203 SAMTools SNP 246269 246269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C17%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.18%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1203 SAMTools SNP 246648 246648 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.25%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold1203 SAMTools SNP 247178 247178 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1203 SAMTools SNP 247755 247755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1203 SAMTools SNP 247769 247769 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 247957 247957 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1203 SAMTools SNP 247994 247994 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1203 SAMTools SNP 247998 247998 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1203 SAMTools SNP 248320 248320 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1203 SAMTools SNP 249377 249377 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C36%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D4.9e-05%2C7.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C42:45 scaffold1203 SAMTools SNP 249422 249422 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C26%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C44:47 scaffold1203 SAMTools SNP 249923 249923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1203 SAMTools SNP 249937 249937 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C48:51 scaffold1203 SAMTools SNP 250052 250052 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1203 SAMTools SNP 250440 250440 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1203 SAMTools SNP 250472 250472 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.14%2C0.003%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C117:68 scaffold1203 SAMTools SNP 250517 250517 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1203 SAMTools SNP 251837 251837 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1203 SAMTools SNP 257823 257823 22.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1203 SAMTools SNP 258036 258036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1203 SAMTools SNP 262897 262897 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1204 SAMTools SNP 15696 15696 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1204 SAMTools SNP 16705 16705 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C18%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.005%2C4.4e-11%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1204 SAMTools SNP 22014 22014 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D15%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C36%2C0:55 scaffold1204 SAMTools SNP 29160 29160 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C6%3BMQ%3D49%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C242:99 scaffold1204 SAMTools SNP 31553 31553 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D0.036%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C69:55 scaffold1204 SAMTools SNP 34559 34559 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.48%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C234:63 scaffold1204 SAMTools SNP 34737 34737 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1204 SAMTools SNP 38391 38391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D42%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1204 SAMTools SNP 59887 59887 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C24%2C0:45 scaffold1204 SAMTools SNP 77857 77857 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold1204 SAMTools SNP 113709 113709 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1204 SAMTools SNP 131037 131037 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1204 SAMTools SNP 131043 131043 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1204 SAMTools SNP 131541 131541 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1204 SAMTools SNP 157150 157150 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.59%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1204 SAMTools SNP 158488 158488 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C62%2C113%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-06%2C5.7e-195%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1204 SAMTools SNP 158575 158575 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C98%2C6%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-12%2C0.38%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1204 SAMTools SNP 158578 158578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C101%2C5%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-13%2C0.005%2C1%2C1.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1204 SAMTools SNP 172474 172474 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1204 SAMTools SNP 172499 172499 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1204 SAMTools SNP 178496 178496 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C39%2C0:74 scaffold1204 SAMTools SNP 180306 180306 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1204 SAMTools SNP 180328 180328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1204 SAMTools SNP 184457 184457 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1204 SAMTools SNP 185092 185092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1204 SAMTools SNP 185098 185098 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C0.00013%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C226:34 scaffold1204 SAMTools SNP 185107 185107 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1204 SAMTools SNP 185852 185852 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1204 SAMTools SNP 185909 185909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1204 SAMTools SNP 185914 185914 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1204 SAMTools SNP 186265 186265 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1204 SAMTools SNP 188832 188832 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C104:40 scaffold1204 SAMTools SNP 192105 192105 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.54%2C0.00023%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1204 SAMTools SNP 192135 192135 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.31%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C244:99 scaffold1204 SAMTools SNP 195587 195587 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1204 SAMTools SNP 195896 195896 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.45%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold1204 SAMTools SNP 196908 196908 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.083%2C0.018%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C209:44 scaffold1204 SAMTools SNP 196952 196952 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold1204 SAMTools SNP 199247 199247 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1204 SAMTools SNP 199256 199256 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1204 SAMTools SNP 199397 199397 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1204 SAMTools SNP 203342 203342 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1204 SAMTools SNP 205306 205306 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D57.7%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C96:88 scaffold1204 SAMTools SNP 205309 205309 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C15%2C0:27 scaffold1204 SAMTools SNP 205705 205705 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1204 SAMTools SNP 208748 208748 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold1204 SAMTools SNP 209848 209848 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1204 SAMTools SNP 209875 209875 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1204 SAMTools SNP 216233 216233 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1204 SAMTools SNP 216260 216260 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1204 SAMTools SNP 216583 216583 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold1204 SAMTools SNP 219312 219312 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1204 SAMTools SNP 219324 219324 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1204 SAMTools SNP 221552 221552 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0125%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold1204 SAMTools SNP 230559 230559 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1204 SAMTools SNP 234156 234156 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1204 SAMTools SNP 234217 234217 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C72%2C0:99 scaffold1204 SAMTools SNP 234240 234240 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D51%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.41%2C6.3e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1204 SAMTools SNP 238582 238582 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1204 SAMTools SNP 238612 238612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1204 SAMTools SNP 239242 239242 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C11%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.75%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1204 SAMTools SNP 239450 239450 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1204 SAMTools SNP 239464 239464 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1204 SAMTools SNP 240216 240216 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C10%2C4%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.67%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1204 SAMTools SNP 240619 240619 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1204 SAMTools SNP 242621 242621 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1204 SAMTools SNP 242643 242643 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1205 SAMTools SNP 11288 11288 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1205 SAMTools SNP 11289 11289 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1205 SAMTools SNP 16767 16767 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1205 SAMTools SNP 17301 17301 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1205 SAMTools SNP 19106 19106 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1205 SAMTools SNP 19791 19791 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1205 SAMTools SNP 27804 27804 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1205 SAMTools SNP 38667 38667 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1205 SAMTools SNP 72355 72355 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1205 SAMTools SNP 73176 73176 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1205 SAMTools SNP 73217 73217 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1205 SAMTools SNP 87094 87094 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C117%2C0:99 scaffold1205 SAMTools SNP 87165 87165 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1205 SAMTools SNP 87964 87964 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D77%2C0%2C404%2C7%3BMQ%3D35%3BFQ%3D-282%3BPV4%3D0.6%2C2.4e-14%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1205 SAMTools SNP 87985 87985 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C1%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1205 SAMTools SNP 88998 88998 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D737%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C27%3BMQ%3D3%3BFQ%3D-105%3BPV4%3D1%2C0.24%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C78%2C0:36 scaffold1205 SAMTools SNP 89767 89767 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C360%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C255%2C0:99 scaffold1205 SAMTools SNP 93449 93449 32.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1205 SAMTools SNP 111839 111839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1205 SAMTools SNP 112326 112326 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 262 262 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1209 SAMTools SNP 304 304 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1209 SAMTools SNP 571 571 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1209 SAMTools SNP 592 592 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1209 SAMTools SNP 664 664 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1209 SAMTools SNP 967 967 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1209 SAMTools SNP 985 985 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1209 SAMTools SNP 1016 1016 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1209 SAMTools SNP 2346 2346 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D41.9%3BPV4%3D0.46%2C6.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C69:72 scaffold1209 SAMTools SNP 2607 2607 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C108%2C0:99 scaffold1209 SAMTools SNP 24425 24425 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1209 SAMTools SNP 25059 25059 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1209 SAMTools SNP 112959 112959 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 112968 112968 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 118294 118294 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1209 SAMTools SNP 122013 122013 3.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1209 SAMTools SNP 125322 125322 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1209 SAMTools SNP 173686 173686 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C30%2C0:57 scaffold1209 SAMTools SNP 173856 173856 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C12%2C14%3BMQ%3D31%3BFQ%3D-60%3BPV4%3D0.032%2C1.8e-10%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C33%2C0:63 scaffold1209 SAMTools SNP 173913 173913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C9%3BMQ%3D49%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1209 SAMTools SNP 174155 174155 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1209 SAMTools SNP 180867 180867 61.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C6.2e-12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C8:11 scaffold1209 SAMTools SNP 185260 185260 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 185284 185284 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 186749 186749 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold1209 SAMTools SNP 187382 187382 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C19%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.34%2C1.3e-28%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C233:50 scaffold1209 SAMTools SNP 187683 187683 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 188433 188433 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1209 SAMTools SNP 188756 188756 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1209 SAMTools SNP 189069 189069 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1209 SAMTools SNP 189790 189790 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1209 SAMTools SNP 190593 190593 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1209 SAMTools SNP 191068 191068 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C42%2C0:80 scaffold1209 SAMTools SNP 191516 191516 32.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1209 SAMTools SNP 193282 193282 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1209 SAMTools SNP 194996 194996 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold121 SAMTools SNP 2477 2477 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 2636 2636 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold121 SAMTools SNP 12137 12137 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 12148 12148 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 12164 12164 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0.33%2C0.33%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold121 SAMTools SNP 12564 12564 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold121 SAMTools SNP 12632 12632 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold121 SAMTools SNP 35950 35950 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D355%2C1%2C110%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2.3e-07%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold121 SAMTools SNP 48764 48764 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 49627 49627 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0073%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C26:29 scaffold121 SAMTools SNP 49690 49690 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 49744 49744 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold121 SAMTools SNP 50199 50199 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold121 SAMTools SNP 50274 50274 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold121 SAMTools SNP 51597 51597 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold121 SAMTools SNP 51631 51631 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold121 SAMTools SNP 52033 52033 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 54627 54627 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C9.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C209:34 scaffold121 SAMTools SNP 54899 54899 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C114%2C0:99 scaffold121 SAMTools SNP 55217 55217 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold121 SAMTools SNP 56970 56970 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold121 SAMTools SNP 58689 58689 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C210:99 scaffold121 SAMTools SNP 59046 59046 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C12%2C22%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.068%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold121 SAMTools SNP 59091 59091 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C28%2C1%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.046%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold121 SAMTools SNP 59145 59145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 59542 59542 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C29%2C8%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C2.9e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 59755 59755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 59764 59764 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 60971 60971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C25%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.66%2C0.45%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold121 SAMTools SNP 61418 61418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold121 SAMTools SNP 61430 61430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C15%3BMQ%3D50%3BFQ%3D-59%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C32%2C0:61 scaffold121 SAMTools SNP 61469 61469 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C16%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.067%2C3.7e-10%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold121 SAMTools SNP 61550 61550 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C33%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 62236 62236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C54%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold121 SAMTools SNP 68846 68846 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold121 SAMTools SNP 69479 69479 51.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold121 SAMTools SNP 76326 76326 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C31%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold121 SAMTools SNP 76386 76386 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.63%2C0.0031%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold121 SAMTools SNP 76404 76404 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 76440 76440 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 94795 94795 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C175%2C0:99 scaffold121 SAMTools SNP 94852 94852 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C82%2C3%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.078%2C0.14%2C1%2C6.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold121 SAMTools SNP 99612 99612 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 99697 99697 26.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold121 SAMTools SNP 103074 103074 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold121 SAMTools SNP 103089 103089 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.41%2C0.45%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold121 SAMTools SNP 104237 104237 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C23%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold121 SAMTools SNP 105032 105032 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold121 SAMTools SNP 105038 105038 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold121 SAMTools SNP 105655 105655 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold121 SAMTools SNP 105665 105665 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold121 SAMTools SNP 109841 109841 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold121 SAMTools SNP 146290 146290 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C132:99 scaffold121 SAMTools SNP 146322 146322 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C249:99 scaffold121 SAMTools SNP 146340 146340 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C251:99 scaffold121 SAMTools SNP 146364 146364 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.44%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C229:99 scaffold121 SAMTools SNP 146893 146893 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.066%2C8.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold121 SAMTools SNP 146917 146917 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0047%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold121 SAMTools SNP 147196 147196 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C0%2C16%3BMQ%3D50%3BFQ%3D123%3BPV4%3D4.7e-06%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold121 SAMTools SNP 147289 147289 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold121 SAMTools SNP 147314 147314 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold121 SAMTools SNP 147989 147989 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold121 SAMTools SNP 148185 148185 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold121 SAMTools SNP 148320 148320 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C5%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.0011%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 148356 148356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C62%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-06%2C0.4%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 148682 148682 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C10%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C4.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 149075 149075 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C20%2C3%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.8e-09%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold121 SAMTools SNP 149102 149102 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C20%2C1%2C12%3BMQ%3D50%3BFQ%3D77%3BPV4%3D3.7e-06%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold121 SAMTools SNP 151288 151288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 152605 152605 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold121 SAMTools SNP 152633 152633 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.15%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold121 SAMTools SNP 152934 152934 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C16%2C41%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.078%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold121 SAMTools SNP 153390 153390 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C71%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 153736 153736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C43%2C26%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.021%2C0.069%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 154153 154153 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.49%2C0.08%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold121 SAMTools SNP 155119 155119 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold121 SAMTools SNP 157058 157058 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold121 SAMTools SNP 157158 157158 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0198%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold121 SAMTools SNP 158309 158309 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold121 SAMTools SNP 197212 197212 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 197227 197227 52.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C65%2C59%2C86%2C0%2C80:10 scaffold121 SAMTools SNP 208162 208162 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold121 SAMTools SNP 208179 208179 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C22%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.012%2C7.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold121 SAMTools SNP 208249 208249 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C53%3BMQ%3D47%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold121 SAMTools SNP 208969 208969 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D35%3BFQ%3D32%3BPV4%3D0.045%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C111:62 scaffold121 SAMTools SNP 208970 208970 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D9.52%3BPV4%3D0.028%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C36:39 scaffold121 SAMTools SNP 208978 208978 14.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C5%2C0:8 scaffold121 SAMTools SNP 210791 210791 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold121 SAMTools SNP 211328 211328 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold121 SAMTools SNP 211342 211342 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 212232 212232 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 304611 304611 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C18%3BMQ%3D31%3BFQ%3D101%3BPV4%3D0.33%2C1.6e-31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C150:99 scaffold121 SAMTools SNP 304662 304662 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C15%3BMQ%3D32%3BFQ%3D5.47%3BPV4%3D1%2C3.4e-33%2C0.49%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C178:30 scaffold121 SAMTools SNP 341322 341322 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold121 SAMTools SNP 341374 341374 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D3.44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C29:32 scaffold121 SAMTools SNP 341588 341588 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold121 SAMTools SNP 349070 349070 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold121 SAMTools SNP 349099 349099 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold121 SAMTools SNP 349773 349773 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 350332 350332 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold121 SAMTools SNP 350340 350340 60.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold121 SAMTools SNP 350394 350394 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C6.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold121 SAMTools SNP 350508 350508 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold121 SAMTools SNP 358421 358421 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold121 SAMTools SNP 358504 358504 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold121 SAMTools SNP 358510 358510 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold121 SAMTools SNP 358885 358885 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C138:66 scaffold121 SAMTools SNP 358963 358963 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold121 SAMTools SNP 359159 359159 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.12%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold121 SAMTools SNP 359402 359402 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold121 SAMTools SNP 360607 360607 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold121 SAMTools SNP 360721 360721 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 360961 360961 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00023%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold121 SAMTools SNP 361066 361066 32.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold121 SAMTools SNP 361108 361108 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C35%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C9:12 scaffold121 SAMTools SNP 361667 361667 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.011%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold121 SAMTools SNP 361713 361713 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.014%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold121 SAMTools SNP 362931 362931 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold121 SAMTools SNP 363290 363290 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.077%2C0.016%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold121 SAMTools SNP 363296 363296 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.2%2C0.014%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold121 SAMTools SNP 363875 363875 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold121 SAMTools SNP 363900 363900 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C23%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.056%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold121 SAMTools SNP 364590 364590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 364722 364722 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C0.094%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold121 SAMTools SNP 364785 364785 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 364792 364792 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 365174 365174 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C140:99 scaffold121 SAMTools SNP 366023 366023 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 366088 366088 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold121 SAMTools SNP 366109 366109 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold121 SAMTools SNP 367731 367731 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 368200 368200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold121 SAMTools SNP 368248 368248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold121 SAMTools SNP 368272 368272 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 368278 368278 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 370774 370774 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 370804 370804 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 373306 373306 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 373557 373557 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold121 SAMTools SNP 373605 373605 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold121 SAMTools SNP 373644 373644 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold121 SAMTools SNP 373856 373856 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 374250 374250 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 378202 378202 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C36%2C0:69 scaffold121 SAMTools SNP 379097 379097 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C151%2C0:99 scaffold121 SAMTools SNP 379181 379181 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C237:99 scaffold121 SAMTools SNP 380018 380018 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.44%2C0.031%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C245:56 scaffold121 SAMTools SNP 380053 380053 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.51%2C0.25%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold121 SAMTools SNP 380331 380331 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.36%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 380648 380648 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.01%2C1%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold121 SAMTools SNP 381016 381016 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 381206 381206 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 381862 381862 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.45%2C9.2e-11%2C1%2C9.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold121 SAMTools SNP 382110 382110 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C32:35 scaffold121 SAMTools SNP 382255 382255 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold121 SAMTools SNP 382558 382558 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold121 SAMTools SNP 383669 383669 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 384959 384959 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D34%3BFQ%3D44%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C71:74 scaffold121 SAMTools SNP 388022 388022 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C72%2C0:99 scaffold121 SAMTools SNP 388679 388679 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D197%2C57%2C11%2C24%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1e-07%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold121 SAMTools SNP 390493 390493 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold121 SAMTools SNP 391313 391313 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 391613 391613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1886%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D328%2C636%2C308%2C614%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.81%2C1%2C0.0039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 393311 393311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C152%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 393359 393359 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C94%2C36%2C69%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.00021%2C8.2e-157%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold121 SAMTools SNP 393386 393386 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D523%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C203%2C41%2C147%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-05%2C4.8e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 393678 393678 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2988%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1462%2C167%2C1156%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 394252 394252 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 394385 394385 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D741%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C74%2C101%2C325%3BMQ%3D50%3BFQ%3D-139%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C112%2C0:99 scaffold121 SAMTools SNP 395485 395485 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold121 SAMTools SNP 396059 396059 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C14%2C44%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0016%2C1.1e-117%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C228:73 scaffold121 SAMTools SNP 400001 400001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold121 SAMTools SNP 400315 400315 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold121 SAMTools SNP 400359 400359 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0023%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold121 SAMTools SNP 400424 400424 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 401202 401202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.068%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold121 SAMTools SNP 401284 401284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold121 SAMTools SNP 401819 401819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 402276 402276 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 402456 402456 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C2.9e-23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold121 SAMTools SNP 406813 406813 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold121 SAMTools SNP 406840 406840 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold121 SAMTools SNP 407263 407263 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C3%2C2%3BMQ%3D49%3BFQ%3D118%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold121 SAMTools SNP 407266 407266 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C4%2C2%3BMQ%3D49%3BFQ%3D147%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold121 SAMTools SNP 407561 407561 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.13%2C0.32%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 407588 407588 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C3%2C1%3BMQ%3D49%3BFQ%3D55%3BPV4%3D0.28%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold121 SAMTools SNP 410411 410411 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold121 SAMTools SNP 417368 417368 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold121 SAMTools SNP 421404 421404 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold121 SAMTools SNP 435620 435620 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 436705 436705 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 436722 436722 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold121 SAMTools SNP 437124 437124 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold121 SAMTools SNP 438365 438365 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C21%2C1%3BMQ%3D49%3BFQ%3D105%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C132:99 scaffold121 SAMTools SNP 438420 438420 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C0.28%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold121 SAMTools SNP 438424 438424 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.56%2C0.37%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold121 SAMTools SNP 440134 440134 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C42%2C0:81 scaffold121 SAMTools SNP 447590 447590 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold121 SAMTools SNP 457670 457670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C44%2C39%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C7.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 459782 459782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 459803 459803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C34%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold121 SAMTools SNP 460090 460090 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold121 SAMTools SNP 462838 462838 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 468750 468750 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold121 SAMTools SNP 469198 469198 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold121 SAMTools SNP 474709 474709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 474739 474739 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 474790 474790 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold121 SAMTools SNP 474814 474814 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 475057 475057 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold121 SAMTools SNP 475613 475613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.034%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold121 SAMTools SNP 476036 476036 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold121 SAMTools SNP 477212 477212 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0068%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold121 SAMTools SNP 479572 479572 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C10%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold121 SAMTools SNP 480599 480599 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold121 SAMTools SNP 480626 480626 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 480653 480653 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold121 SAMTools SNP 480683 480683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 481928 481928 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D4%2C2%2C74%2C3%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.04%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C11:14 scaffold121 SAMTools SNP 482030 482030 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C54:99 scaffold121 SAMTools SNP 483475 483475 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold121 SAMTools SNP 483496 483496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 484498 484498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold121 SAMTools SNP 484510 484510 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold121 SAMTools SNP 485491 485491 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold121 SAMTools SNP 485533 485533 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold121 SAMTools SNP 486224 486224 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.0086%2C0.055%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold121 SAMTools SNP 486230 486230 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C5%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0086%2C0.00071%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold121 SAMTools SNP 488575 488575 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.033%2C0.46%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold121 SAMTools SNP 490223 490223 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold121 SAMTools SNP 490796 490796 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 491800 491800 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C23%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 491822 491822 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C70%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 491830 491830 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C25%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 491852 491852 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C29%2C26%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 492467 492467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 492608 492608 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.38%2C2.3e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C200:44 scaffold121 SAMTools SNP 494266 494266 101 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C87%2C71%2C132%2C0%2C125:29 scaffold121 SAMTools SNP 496840 496840 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 504727 504727 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 504975 504975 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold121 SAMTools SNP 508537 508537 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 508565 508565 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 508717 508717 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 508720 508720 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 519343 519343 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C395%2C26%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 519682 519682 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C348%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 519761 519761 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C0.015%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold121 SAMTools SNP 520070 520070 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 520118 520118 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold121 SAMTools SNP 525334 525334 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 525502 525502 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 525827 525827 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 526744 526744 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold121 SAMTools SNP 526748 526748 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold121 SAMTools SNP 526774 526774 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 526784 526784 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 526847 526847 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold121 SAMTools SNP 527017 527017 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C0.11%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C148:99 scaffold121 SAMTools SNP 527042 527042 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00017%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold121 SAMTools SNP 527044 527044 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold121 SAMTools SNP 527069 527069 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold121 SAMTools SNP 527090 527090 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 527096 527096 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.025%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold121 SAMTools SNP 527368 527368 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C30%2C0:57 scaffold121 SAMTools SNP 527416 527416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold121 SAMTools SNP 527823 527823 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 528012 528012 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 530056 530056 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C36%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C141%2C0:99 scaffold121 SAMTools SNP 530176 530176 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C39%2C0:75 scaffold121 SAMTools SNP 530499 530499 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C66%2C24%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0019%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 531121 531121 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C314%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 531271 531271 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C98%2C4%2C10%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0019%2C0.028%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold121 SAMTools SNP 531655 531655 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C29%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.036%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold121 SAMTools SNP 531680 531680 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 532633 532633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C57%2C30%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 532677 532677 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold121 SAMTools SNP 532765 532765 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C39%2C38%2C17%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.11%2C8.2e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold121 SAMTools SNP 533252 533252 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C73%2C22%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 535124 535124 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C35%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 535147 535147 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C62%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 535529 535529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C47%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold121 SAMTools SNP 535852 535852 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C15%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.55%2C0.45%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold121 SAMTools SNP 536697 536697 220 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold121 SAMTools SNP 536846 536846 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 536864 536864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C24%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold121 SAMTools SNP 537127 537127 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 537217 537217 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C21%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold121 SAMTools SNP 537646 537646 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold121 SAMTools SNP 537670 537670 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold121 SAMTools SNP 538149 538149 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.13%2C0.38%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold121 SAMTools SNP 538164 538164 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.00057%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C244:99 scaffold121 SAMTools SNP 538197 538197 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 538203 538203 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold121 SAMTools SNP 539615 539615 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold121 SAMTools SNP 539630 539630 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 540221 540221 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 540470 540470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 540722 540722 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold121 SAMTools SNP 543900 543900 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold121 SAMTools SNP 543927 543927 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C218:44 scaffold121 SAMTools SNP 544414 544414 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C63%2C0:99 scaffold121 SAMTools SNP 544781 544781 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold121 SAMTools SNP 544955 544955 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 545440 545440 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold121 SAMTools SNP 545545 545545 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C84%2C0:99 scaffold121 SAMTools SNP 545578 545578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold121 SAMTools SNP 545586 545586 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1.3e-05%2C1.9e-07%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold121 SAMTools SNP 545598 545598 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C34%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 545858 545858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold121 SAMTools SNP 545864 545864 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 545873 545873 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.037%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold121 SAMTools SNP 546610 546610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C14%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 546658 546658 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 546708 546708 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold121 SAMTools SNP 547362 547362 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold121 SAMTools SNP 547374 547374 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C235:99 scaffold121 SAMTools SNP 547647 547647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 547689 547689 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold121 SAMTools SNP 547869 547869 65.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C6%2C0:10 scaffold121 SAMTools SNP 547878 547878 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold121 SAMTools SNP 547937 547937 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold121 SAMTools SNP 548245 548245 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 548304 548304 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C24:27 scaffold121 SAMTools SNP 548410 548410 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold121 SAMTools SNP 548422 548422 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold121 SAMTools SNP 548431 548431 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.19%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C252:99 scaffold121 SAMTools SNP 548818 548818 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold121 SAMTools SNP 548905 548905 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1.5e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C134:99 scaffold121 SAMTools SNP 549013 549013 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.018%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C134:99 scaffold121 SAMTools SNP 549043 549043 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold121 SAMTools SNP 550291 550291 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold121 SAMTools SNP 550717 550717 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 551065 551065 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C39%2C0:75 scaffold121 SAMTools SNP 551083 551083 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold121 SAMTools SNP 551651 551651 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold121 SAMTools SNP 551680 551680 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 551692 551692 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold121 SAMTools SNP 551898 551898 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 551931 551931 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0059%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold121 SAMTools SNP 551976 551976 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 552242 552242 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold121 SAMTools SNP 552311 552311 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.32%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C124:62 scaffold121 SAMTools SNP 552533 552533 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold121 SAMTools SNP 552902 552902 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.002%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C197:99 scaffold121 SAMTools SNP 552938 552938 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold121 SAMTools SNP 553125 553125 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold121 SAMTools SNP 553190 553190 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 553197 553197 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 553674 553674 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C42%2C0:81 scaffold121 SAMTools SNP 553696 553696 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 553740 553740 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0011%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold121 SAMTools SNP 554187 554187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 554445 554445 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold121 SAMTools SNP 555689 555689 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C19%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold121 SAMTools SNP 556120 556120 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold121 SAMTools SNP 556177 556177 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 556192 556192 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 556510 556510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 556543 556543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 556912 556912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 556955 556955 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0017%2C1%2C1%2C9.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold121 SAMTools SNP 557514 557514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C51%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold121 SAMTools SNP 557556 557556 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 558034 558034 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C0.4%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold121 SAMTools SNP 558049 558049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 558076 558076 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C207:99 scaffold121 SAMTools SNP 558106 558106 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C22%2C11%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold121 SAMTools SNP 558473 558473 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C2%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.17%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold121 SAMTools SNP 559096 559096 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 559126 559126 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 559479 559479 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold121 SAMTools SNP 559497 559497 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold121 SAMTools SNP 559570 559570 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.012%2C0.16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C160:79 scaffold121 SAMTools SNP 559617 559617 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold121 SAMTools SNP 559967 559967 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C177:99 scaffold121 SAMTools SNP 560326 560326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 560344 560344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 560413 560413 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold121 SAMTools SNP 560419 560419 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold121 SAMTools SNP 561007 561007 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 561930 561930 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 562409 562409 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 562747 562747 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold121 SAMTools SNP 562783 562783 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 563836 563836 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold121 SAMTools SNP 563878 563878 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C22:25 scaffold121 SAMTools SNP 564068 564068 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C19%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold121 SAMTools SNP 566248 566248 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold121 SAMTools SNP 566661 566661 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold121 SAMTools SNP 566682 566682 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 566688 566688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold121 SAMTools SNP 566725 566725 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 567155 567155 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold121 SAMTools SNP 567194 567194 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold121 SAMTools SNP 567206 567206 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold121 SAMTools SNP 568286 568286 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C227:99 scaffold121 SAMTools SNP 568793 568793 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 568871 568871 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C16%2C7%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.022%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold121 SAMTools SNP 568891 568891 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 570580 570580 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 571234 571234 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold121 SAMTools SNP 571257 571257 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold121 SAMTools SNP 571261 571261 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C7.8e-05%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C235:67 scaffold121 SAMTools SNP 571270 571270 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0038%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C227:57 scaffold121 SAMTools SNP 571970 571970 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 572520 572520 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 574146 574146 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 575164 575164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 575176 575176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold121 SAMTools SNP 577199 577199 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.69%2C1.3e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold121 SAMTools SNP 577277 577277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 577866 577866 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 578409 578409 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 578461 578461 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold121 SAMTools SNP 578509 578509 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C29%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 578980 578980 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C15%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.016%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold121 SAMTools SNP 578986 578986 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C29%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 579003 579003 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold121 SAMTools SNP 579880 579880 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold121 SAMTools SNP 579919 579919 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 581335 581335 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold121 SAMTools SNP 582446 582446 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C3%2C14%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.25%2C0.039%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold121 SAMTools SNP 582471 582471 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C238:99 scaffold121 SAMTools SNP 582485 582485 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C222:99 scaffold121 SAMTools SNP 583405 583405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold121 SAMTools SNP 583453 583453 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 585950 585950 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C164:99 scaffold121 SAMTools SNP 585962 585962 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.57%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold121 SAMTools SNP 585998 585998 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C0.24%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold121 SAMTools SNP 586723 586723 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold121 SAMTools SNP 596228 596228 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold121 SAMTools SNP 596328 596328 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold121 SAMTools SNP 596337 596337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 596347 596347 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.015%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold121 SAMTools SNP 596349 596349 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0016%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold121 SAMTools SNP 600265 600265 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.21%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold121 SAMTools SNP 602721 602721 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 602915 602915 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 603018 603018 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 604421 604421 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C63%2C0:99 scaffold121 SAMTools SNP 606449 606449 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 607215 607215 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold121 SAMTools SNP 607216 607216 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C251:57 scaffold121 SAMTools SNP 607243 607243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.39%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C250:99 scaffold121 SAMTools SNP 608378 608378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 608405 608405 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.015%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 608450 608450 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 608746 608746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 608758 608758 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C60%2C30%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D2.1e-08%2C1%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold121 SAMTools SNP 610271 610271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 610280 610280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 616707 616707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold121 SAMTools SNP 616749 616749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold121 SAMTools SNP 617707 617707 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold121 SAMTools SNP 617898 617898 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold121 SAMTools SNP 619102 619102 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C63%2C0:99 scaffold121 SAMTools SNP 619123 619123 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold121 SAMTools SNP 619252 619252 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C93%2C0:99 scaffold121 SAMTools SNP 622182 622182 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold121 SAMTools SNP 624858 624858 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.8e-07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold121 SAMTools SNP 625302 625302 45.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold121 SAMTools SNP 625472 625472 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold121 SAMTools SNP 637742 637742 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold121 SAMTools SNP 637926 637926 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold121 SAMTools SNP 639368 639368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C4%2C76%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 640425 640425 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C131%2C23%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.15%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 640708 640708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 640774 640774 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 641452 641452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 642983 642983 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C32%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold121 SAMTools SNP 643963 643963 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C46%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 643966 643966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C10%2C47%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 659182 659182 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.43%2C0.0075%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C198:50 scaffold121 SAMTools SNP 660075 660075 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 660147 660147 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 660148 660148 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C42:41 scaffold121 SAMTools SNP 661126 661126 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold121 SAMTools SNP 661735 661735 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 661765 661765 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C0.026%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold121 SAMTools SNP 661813 661813 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold121 SAMTools SNP 661981 661981 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold121 SAMTools SNP 662025 662025 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold121 SAMTools SNP 662448 662448 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 662469 662469 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold121 SAMTools SNP 662811 662811 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.098%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold121 SAMTools SNP 664109 664109 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold121 SAMTools SNP 664115 664115 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold121 SAMTools SNP 664175 664175 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold121 SAMTools SNP 664181 664181 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold121 SAMTools SNP 665985 665985 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold121 SAMTools SNP 666006 666006 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold121 SAMTools SNP 666046 666046 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 666752 666752 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C220:99 scaffold121 SAMTools SNP 666848 666848 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 668272 668272 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 668344 668344 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C14%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C5.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold121 SAMTools SNP 670414 670414 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.094%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold121 SAMTools SNP 672380 672380 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold121 SAMTools SNP 672431 672431 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C63%2C0:99 scaffold121 SAMTools SNP 673641 673641 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 673658 673658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 674798 674798 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 674846 674846 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 674876 674876 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 674906 674906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 675296 675296 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 675302 675302 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold121 SAMTools SNP 675338 675338 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C10%2C52%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold121 SAMTools SNP 675368 675368 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C323%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 675798 675798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C52%2C110%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 675855 675855 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C187%2C15%2C161%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C9.4e-23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 677850 677850 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C122%2C0%2C80%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6.9e-206%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold121 SAMTools SNP 681264 681264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 681393 681393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C60%2C72%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C1%2C2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 682176 682176 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C200%2C14%2C196%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C5.1e-175%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 682781 682781 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C25%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0032%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold121 SAMTools SNP 682811 682811 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C18%2C61%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 683359 683359 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C7%2C49%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 684638 684638 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 686353 686353 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 698994 698994 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C8.8e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C142:69 scaffold121 SAMTools SNP 699228 699228 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C5.4e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C243:56 scaffold121 SAMTools SNP 699291 699291 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.053%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold121 SAMTools SNP 705274 705274 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 727951 727951 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold121 SAMTools SNP 730898 730898 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.16%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold121 SAMTools SNP 731011 731011 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.038%2C0.053%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold121 SAMTools SNP 731623 731623 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D270%2C15%2C242%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 731641 731641 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C69%2C3%2C14%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.26%2C0.00049%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold121 SAMTools SNP 733204 733204 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C57%2C0:99 scaffold121 SAMTools SNP 740157 740157 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.061%2C9.4e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold121 SAMTools SNP 744940 744940 79.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C12%2C0:21 scaffold121 SAMTools SNP 745509 745509 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C17%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D3.2e-07%2C0.012%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C189:99 scaffold121 SAMTools SNP 745510 745510 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C16%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D4.9e-07%2C0.029%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C191:99 scaffold121 SAMTools SNP 747209 747209 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold121 SAMTools SNP 747221 747221 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold121 SAMTools SNP 747726 747726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C12%2C29%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 747939 747939 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C28%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 747969 747969 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C69%2C2%2C26%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.7e-44%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold121 SAMTools SNP 748450 748450 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold121 SAMTools SNP 748455 748455 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold121 SAMTools SNP 748464 748464 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 748512 748512 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold121 SAMTools SNP 749335 749335 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold121 SAMTools SNP 749404 749404 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold121 SAMTools SNP 749956 749956 116 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C38%2C26%2C143%2C0%2C140:21 scaffold121 SAMTools SNP 750144 750144 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold121 SAMTools SNP 750157 750157 84.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold121 SAMTools SNP 750861 750861 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold121 SAMTools SNP 750891 750891 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C197:37 scaffold121 SAMTools SNP 751026 751026 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C31%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold121 SAMTools SNP 751389 751389 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C40%2C1%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold121 SAMTools SNP 751413 751413 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 751794 751794 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold121 SAMTools SNP 751818 751818 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold121 SAMTools SNP 751929 751929 33.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold121 SAMTools SNP 751983 751983 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 752141 752141 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold121 SAMTools SNP 752209 752209 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold121 SAMTools SNP 752218 752218 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold121 SAMTools SNP 752242 752242 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold121 SAMTools SNP 753851 753851 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C255%2C0:99 scaffold121 SAMTools SNP 753859 753859 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C28%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C229%2C0:99 scaffold121 SAMTools SNP 754217 754217 75.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold121 SAMTools SNP 754780 754780 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C45%2C0%2C18%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.5e-16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold121 SAMTools SNP 754782 754782 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C0%2C26%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.51%2C2.2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold121 SAMTools SNP 759170 759170 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C0%2C20%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.3%2C0.17%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold121 SAMTools SNP 760557 760557 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold121 SAMTools SNP 760571 760571 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold121 SAMTools SNP 764963 764963 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 764981 764981 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 766010 766010 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold121 SAMTools SNP 766040 766040 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold121 SAMTools SNP 766061 766061 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold121 SAMTools SNP 768810 768810 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold121 SAMTools SNP 772375 772375 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold121 SAMTools SNP 772450 772450 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.17%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold121 SAMTools SNP 775820 775820 26.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold121 SAMTools SNP 776042 776042 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.12%3BPV4%3D1%2C6.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C29:32 scaffold121 SAMTools SNP 776220 776220 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C33%2C0:60 scaffold121 SAMTools SNP 776592 776592 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold121 SAMTools SNP 776623 776623 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold121 SAMTools SNP 779410 779410 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.47%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold121 SAMTools SNP 779530 779530 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold121 SAMTools SNP 780591 780591 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C34%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1.5e-05%2C5.8e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold121 SAMTools SNP 780656 780656 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold121 SAMTools SNP 780696 780696 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold121 SAMTools SNP 780750 780750 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 781888 781888 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold121 SAMTools SNP 781933 781933 6.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold121 SAMTools SNP 802072 802072 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C84%2C0:99 scaffold121 SAMTools SNP 802450 802450 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold121 SAMTools SNP 802480 802480 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold121 SAMTools SNP 803053 803053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold121 SAMTools SNP 803059 803059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold121 SAMTools SNP 803197 803197 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C23%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold121 SAMTools SNP 804385 804385 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 804457 804457 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C35%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold121 SAMTools SNP 804459 804459 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 804641 804641 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C10%2C17%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 804674 804674 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C16%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C1%2C1%2C6.6e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 804688 804688 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold121 SAMTools SNP 806665 806665 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 806680 806680 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D165%3BPV4%3D2.4e-06%2C1%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold121 SAMTools SNP 814241 814241 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C160:59 scaffold121 SAMTools SNP 814457 814457 6.17 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold121 SAMTools SNP 815144 815144 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 815159 815159 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 816393 816393 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 816912 816912 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold121 SAMTools SNP 820752 820752 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold121 SAMTools SNP 820767 820767 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 825019 825019 26.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold121 SAMTools SNP 828473 828473 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold121 SAMTools SNP 831726 831726 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 831762 831762 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold121 SAMTools SNP 832932 832932 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 833427 833427 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 833536 833536 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D3.43%3BPV4%3D1%2C0.0054%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C28:31 scaffold121 SAMTools SNP 833583 833583 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold121 SAMTools SNP 833630 833630 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C48%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 834910 834910 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 836442 836442 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 839945 839945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold121 SAMTools SNP 839989 839989 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 839990 839990 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 842387 842387 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.14%2C4.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold121 SAMTools SNP 842458 842458 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1.1e-17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C250:74 scaffold121 SAMTools SNP 843592 843592 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C4.9e-09%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C14:17 scaffold121 SAMTools SNP 851740 851740 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold121 SAMTools SNP 851845 851845 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold121 SAMTools SNP 858718 858718 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 858724 858724 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C12%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold121 SAMTools SNP 859195 859195 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C2%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.079%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold121 SAMTools SNP 859343 859343 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C4%3BMQ%3D47%3BFQ%3D154%3BPV4%3D0.032%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold121 SAMTools SNP 859989 859989 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C251:99 scaffold121 SAMTools SNP 860061 860061 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold121 SAMTools SNP 860109 860109 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold121 SAMTools SNP 860601 860601 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C251:99 scaffold121 SAMTools SNP 861435 861435 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-68;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C214:46 scaffold121 SAMTools SNP 861785 861785 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold121 SAMTools SNP 863208 863208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold121 SAMTools SNP 863656 863656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 863683 863683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 864196 864196 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.0012%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 864205 864205 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C2%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 865640 865640 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.002%2C1.6e-07%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold121 SAMTools SNP 866627 866627 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold121 SAMTools SNP 867305 867305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold121 SAMTools SNP 867408 867408 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C10%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.015%2C7.3e-24%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold121 SAMTools SNP 867422 867422 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C5%2C11%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.27%2C1.3e-34%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold121 SAMTools SNP 867512 867512 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C27%2C0:51 scaffold121 SAMTools SNP 867522 867522 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold121 SAMTools SNP 868163 868163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 868517 868517 176 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C69%2C0%2C210%2C56%2C207:99 scaffold121 SAMTools SNP 868844 868844 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C10%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0011%2C1.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold121 SAMTools SNP 869069 869069 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.9e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 869537 869537 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C26%2C28%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0001%2C6.2e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold121 SAMTools SNP 870287 870287 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C17%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.024%2C1.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold121 SAMTools SNP 870534 870534 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold121 SAMTools SNP 870878 870878 17.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold121 SAMTools SNP 870929 870929 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold121 SAMTools SNP 871205 871205 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold121 SAMTools SNP 871403 871403 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold121 SAMTools SNP 871446 871446 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 871670 871670 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C25%2C43%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1.3e-81%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 872297 872297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C12%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold121 SAMTools SNP 872553 872553 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C6%2C51%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C8.6e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 872768 872768 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold121 SAMTools SNP 872873 872873 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C90%2C0:99 scaffold121 SAMTools SNP 873119 873119 17.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold121 SAMTools SNP 873254 873254 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C18%2C29%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.82%2C3.9e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold121 SAMTools SNP 873603 873603 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C19%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0012%2C6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold121 SAMTools SNP 873788 873788 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C9%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.075%2C4.2e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold121 SAMTools SNP 874032 874032 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold121 SAMTools SNP 874448 874448 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C30%2C10%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C7.2e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold121 SAMTools SNP 874634 874634 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold121 SAMTools SNP 874748 874748 39.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold121 SAMTools SNP 874997 874997 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C37%2C19%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.71%2C4.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold121 SAMTools SNP 875174 875174 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C255%2C0:99 scaffold121 SAMTools SNP 875279 875279 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C58%2C49%3BMQ%3D50%3BFQ%3D106%3BPV4%3D5.9e-12%2C3.2e-94%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C244:99 scaffold121 SAMTools SNP 875488 875488 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C58%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold121 SAMTools SNP 876429 876429 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold121 SAMTools SNP 876665 876665 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C26%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877021 877021 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C84%2C23%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877372 877372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877378 877378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877429 877429 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877761 877761 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C17%2C6%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0012%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold121 SAMTools SNP 877899 877899 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C90%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C0.1%2C1%2C4.3e-43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 877950 877950 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C30%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 878159 878159 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C53%2C2%2C13%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.51%2C1%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold121 SAMTools SNP 878171 878171 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 878399 878399 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold121 SAMTools SNP 878788 878788 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C27%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 879017 879017 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C21%2C0:39 scaffold121 SAMTools SNP 879059 879059 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold121 SAMTools SNP 879080 879080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 879303 879303 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 879321 879321 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold121 SAMTools SNP 879901 879901 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold121 SAMTools SNP 880200 880200 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C127:54 scaffold121 SAMTools SNP 880204 880204 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C149:28 scaffold121 SAMTools SNP 882144 882144 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold121 SAMTools SNP 883816 883816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 883822 883822 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.076%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 884148 884148 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold121 SAMTools SNP 884175 884175 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C11%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1.6e-06%2C0.36%2C1%2C8.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold121 SAMTools SNP 884190 884190 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold121 SAMTools SNP 884675 884675 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold121 SAMTools SNP 884708 884708 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C33%2C0:63 scaffold121 SAMTools SNP 889193 889193 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold121 SAMTools SNP 889263 889263 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 889638 889638 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 890684 890684 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 890700 890700 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold121 SAMTools SNP 891222 891222 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.42%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold121 SAMTools SNP 891463 891463 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold121 SAMTools SNP 896868 896868 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.52%3BPV4%3D1%2C0.15%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C66:37 scaffold121 SAMTools SNP 897711 897711 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold121 SAMTools SNP 898164 898164 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 898386 898386 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.6%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold121 SAMTools SNP 898604 898604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold121 SAMTools SNP 898614 898614 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 899337 899337 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold121 SAMTools SNP 899355 899355 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold121 SAMTools SNP 899869 899869 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0058%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold121 SAMTools SNP 899932 899932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold121 SAMTools SNP 901641 901641 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold121 SAMTools SNP 901758 901758 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C45%2C0:87 scaffold121 SAMTools SNP 901798 901798 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold121 SAMTools SNP 902076 902076 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C200:57 scaffold121 SAMTools SNP 902097 902097 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C170:62 scaffold121 SAMTools SNP 903701 903701 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 907245 907245 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 907281 907281 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 907909 907909 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold121 SAMTools SNP 908449 908449 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold121 SAMTools SNP 908458 908458 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold121 SAMTools SNP 910224 910224 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold121 SAMTools SNP 912212 912212 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold121 SAMTools SNP 912803 912803 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold121 SAMTools SNP 912827 912827 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.61%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold121 SAMTools SNP 915779 915779 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C117:99 scaffold121 SAMTools SNP 915809 915809 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold121 SAMTools SNP 919009 919009 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 919018 919018 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 919511 919511 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 919517 919517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 919535 919535 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold121 SAMTools SNP 919598 919598 94.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold121 SAMTools SNP 920804 920804 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 926169 926169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 927716 927716 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C292%2C7%2C108%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold121 SAMTools SNP 927907 927907 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C236%2C23%2C33%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1.2e-09%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold121 SAMTools SNP 928036 928036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C38%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 928093 928093 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C50%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.42%2C0.17%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 929514 929514 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 930624 930624 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 931153 931153 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C68:41 scaffold121 SAMTools SNP 931266 931266 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.067%2C3.2e-09%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C113:62 scaffold121 SAMTools SNP 931351 931351 40.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold121 SAMTools SNP 934129 934129 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C37%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold121 SAMTools SNP 935705 935705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold121 SAMTools SNP 936296 936296 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold121 SAMTools SNP 943774 943774 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold121 SAMTools SNP 948167 948167 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 948216 948216 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 950510 950510 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold121 SAMTools SNP 950522 950522 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C71:74 scaffold121 SAMTools SNP 950552 950552 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 950569 950569 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold121 SAMTools SNP 950612 950612 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold121 SAMTools SNP 957010 957010 7.59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold121 SAMTools SNP 959616 959616 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C25%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.18%2C1.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold121 SAMTools SNP 960231 960231 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0055%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold121 SAMTools SNP 960596 960596 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.23%2C6.1e-23%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C178:91 scaffold121 SAMTools SNP 960609 960609 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C200:50 scaffold121 SAMTools SNP 961119 961119 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.00037%2C9.3e-19%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold121 SAMTools SNP 961191 961191 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.14%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C186:47 scaffold121 SAMTools SNP 961218 961218 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C10%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.02%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold121 SAMTools SNP 962545 962545 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 962590 962590 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold121 SAMTools SNP 962828 962828 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold121 SAMTools SNP 963085 963085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold121 SAMTools SNP 963330 963330 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C30%2C0:57 scaffold121 SAMTools SNP 963387 963387 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold121 SAMTools SNP 964009 964009 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C149:99 scaffold121 SAMTools SNP 964021 964021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 964051 964051 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold121 SAMTools SNP 964075 964075 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.27%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold121 SAMTools SNP 964492 964492 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold121 SAMTools SNP 964528 964528 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold121 SAMTools SNP 964661 964661 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 977651 977651 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold121 SAMTools SNP 983911 983911 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold121 SAMTools SNP 983920 983920 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C15%2C22%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1.2e-07%2C0.012%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold121 SAMTools SNP 985618 985618 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C78%2C10%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 985627 985627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C32%2C21%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 986345 986345 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C26%3BMQ%3D50%3BFQ%3D196%3BPV4%3D5.4e-06%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C223:99 scaffold121 SAMTools SNP 986369 986369 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C0.14%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 986805 986805 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.13%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold121 SAMTools SNP 986807 986807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C7%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold121 SAMTools SNP 986858 986858 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C5%2C154%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.71%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold121 SAMTools SNP 987913 987913 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C23%3BMQ%3D49%3BFQ%3D155%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold121 SAMTools SNP 990223 990223 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C225:54 scaffold121 SAMTools SNP 990237 990237 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold121 SAMTools SNP 990257 990257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 996648 996648 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold121 SAMTools SNP 996756 996756 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 996807 996807 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold121 SAMTools SNP 997692 997692 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold121 SAMTools SNP 997694 997694 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold121 SAMTools SNP 998813 998813 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 999387 999387 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 999468 999468 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1001290 1001290 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 1001323 1001323 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold121 SAMTools SNP 1001825 1001825 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold121 SAMTools SNP 1002113 1002113 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold121 SAMTools SNP 1002179 1002179 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold121 SAMTools SNP 1002191 1002191 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold121 SAMTools SNP 1004761 1004761 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C39%2C0:75 scaffold121 SAMTools SNP 1004765 1004765 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold121 SAMTools SNP 1004814 1004814 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold121 SAMTools SNP 1005245 1005245 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold121 SAMTools SNP 1005251 1005251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold121 SAMTools SNP 1005278 1005278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold121 SAMTools SNP 1008035 1008035 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 1008073 1008073 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold121 SAMTools SNP 1009109 1009109 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C17%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold121 SAMTools SNP 1009187 1009187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold121 SAMTools SNP 1010187 1010187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold121 SAMTools SNP 1014754 1014754 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 1019023 1019023 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold121 SAMTools SNP 1021911 1021911 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold121 SAMTools SNP 1022010 1022010 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C36%2C0:69 scaffold121 SAMTools SNP 1022151 1022151 55.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold121 SAMTools SNP 1029073 1029073 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C217:99 scaffold121 SAMTools SNP 1029925 1029925 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold121 SAMTools SNP 1032061 1032061 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold121 SAMTools SNP 1032086 1032086 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold121 SAMTools SNP 1032104 1032104 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold121 SAMTools SNP 1032105 1032105 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold121 SAMTools SNP 1032721 1032721 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 1033849 1033849 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 1035839 1035839 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold121 SAMTools SNP 1039218 1039218 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold121 SAMTools SNP 1039240 1039240 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C123:40 scaffold121 SAMTools SNP 1039247 1039247 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold121 SAMTools SNP 1039258 1039258 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C212:99 scaffold121 SAMTools SNP 1040018 1040018 90.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C47%2C26%2C111%2C0%2C108:39 scaffold121 SAMTools SNP 1044153 1044153 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.015%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C200:99 scaffold121 SAMTools SNP 1045566 1045566 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 1045593 1045593 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold121 SAMTools SNP 1045743 1045743 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1045744 1045744 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1045978 1045978 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold121 SAMTools SNP 1046812 1046812 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold121 SAMTools SNP 1047305 1047305 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1047338 1047338 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1062685 1062685 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold121 SAMTools SNP 1063262 1063262 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold121 SAMTools SNP 1063292 1063292 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold121 SAMTools SNP 1065199 1065199 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold121 SAMTools SNP 1065386 1065386 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1210 SAMTools SNP 972 972 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 1103 1103 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1210 SAMTools SNP 1117 1117 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1210 SAMTools SNP 1133 1133 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1210 SAMTools SNP 1145 1145 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1210 SAMTools SNP 1565 1565 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C22:63 scaffold1210 SAMTools SNP 1566 1566 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.53%2C0.34%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold1210 SAMTools SNP 1567 1567 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.53%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1210 SAMTools SNP 6424 6424 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1210 SAMTools SNP 7213 7213 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1210 SAMTools SNP 7538 7538 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold1210 SAMTools SNP 12608 12608 23.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1210 SAMTools SNP 23813 23813 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C34%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.56%2C2.6e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1210 SAMTools SNP 24248 24248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C81%2C7%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C6.4e-113%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 25236 25236 30.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1210 SAMTools SNP 25466 25466 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C47%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.79%2C4.4e-92%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1210 SAMTools SNP 25806 25806 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.61%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1210 SAMTools SNP 38759 38759 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1210 SAMTools SNP 39551 39551 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1210 SAMTools SNP 39594 39594 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1210 SAMTools SNP 39597 39597 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.072%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1210 SAMTools SNP 43963 43963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.01%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 43993 43993 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 49227 49227 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C7%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 49242 49242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C39%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 49867 49867 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.48%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1210 SAMTools SNP 49906 49906 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 51967 51967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1210 SAMTools SNP 52133 52133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1210 SAMTools SNP 52445 52445 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1210 SAMTools SNP 53218 53218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C39%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1210 SAMTools SNP 53518 53518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1210 SAMTools SNP 53532 53532 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.51%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold1210 SAMTools SNP 56034 56034 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C93%2C0:99 scaffold1210 SAMTools SNP 56178 56178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1.6e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 56202 56202 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 56561 56561 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.23%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1210 SAMTools SNP 56864 56864 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1210 SAMTools SNP 56869 56869 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1210 SAMTools SNP 59599 59599 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1210 SAMTools SNP 59624 59624 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1210 SAMTools SNP 59669 59669 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1210 SAMTools SNP 60992 60992 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1210 SAMTools SNP 62125 62125 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1210 SAMTools SNP 64446 64446 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1210 SAMTools SNP 64510 64510 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C186:99 scaffold1210 SAMTools SNP 68686 68686 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1210 SAMTools SNP 74498 74498 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0002%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C35:38 scaffold1210 SAMTools SNP 78420 78420 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1210 SAMTools SNP 87949 87949 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C49%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 87976 87976 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C2%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1210 SAMTools SNP 88536 88536 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1210 SAMTools SNP 90448 90448 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1210 SAMTools SNP 102887 102887 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1210 SAMTools SNP 102899 102899 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1210 SAMTools SNP 103990 103990 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1210 SAMTools SNP 110370 110370 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1210 SAMTools SNP 110849 110849 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1210 SAMTools SNP 119747 119747 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C35%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.042%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 122849 122849 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1210 SAMTools SNP 124800 124800 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold1210 SAMTools SNP 139471 139471 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.27%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1210 SAMTools SNP 157775 157775 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.63%2C7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1210 SAMTools SNP 158083 158083 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.6e-20%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 158315 158315 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1210 SAMTools SNP 158573 158573 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 159377 159377 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C12%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1210 SAMTools SNP 160654 160654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1210 SAMTools SNP 160675 160675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1210 SAMTools SNP 160832 160832 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1210 SAMTools SNP 160868 160868 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1210 SAMTools SNP 160931 160931 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 162923 162923 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold1210 SAMTools SNP 165735 165735 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1210 SAMTools SNP 170176 170176 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 170640 170640 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C19%2C81%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.2%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 173081 173081 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1210 SAMTools SNP 173353 173353 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1210 SAMTools SNP 179863 179863 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 179904 179904 18 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1210 SAMTools SNP 180019 180019 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C36%2C0:69 scaffold1210 SAMTools SNP 180156 180156 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0374%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold1210 SAMTools SNP 186585 186585 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C78%2C0:99 scaffold1210 SAMTools SNP 195587 195587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C38%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1210 SAMTools SNP 195927 195927 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C33%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.029%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 195990 195990 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C5%2C72%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 197668 197668 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C16%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1210 SAMTools SNP 201513 201513 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C77%2C14%2C45%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C1%2C0.015%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 206180 206180 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1210 SAMTools SNP 207333 207333 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1210 SAMTools SNP 207374 207374 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1210 SAMTools SNP 215488 215488 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 245801 245801 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 245802 245802 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 263542 263542 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 264053 264053 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1210 SAMTools SNP 264642 264642 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1210 SAMTools SNP 265194 265194 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 265217 265217 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 312574 312574 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1210 SAMTools SNP 312585 312585 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1210 SAMTools SNP 313104 313104 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1210 SAMTools SNP 316312 316312 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D28.8%3BPV4%3D1%2C6.4e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C69:59 scaffold1210 SAMTools SNP 325844 325844 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C205:99 scaffold1210 SAMTools SNP 325850 325850 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C250:54 scaffold1210 SAMTools SNP 326330 326330 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1210 SAMTools SNP 326898 326898 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1210 SAMTools SNP 327405 327405 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1210 SAMTools SNP 327516 327516 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1210 SAMTools SNP 328835 328835 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1210 SAMTools SNP 329332 329332 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1210 SAMTools SNP 329344 329344 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1210 SAMTools SNP 330155 330155 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1210 SAMTools SNP 334106 334106 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1210 SAMTools SNP 335142 335142 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1210 SAMTools SNP 335156 335156 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.098%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1210 SAMTools SNP 335171 335171 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1210 SAMTools SNP 355288 355288 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 355318 355318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 355348 355348 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1210 SAMTools SNP 359403 359403 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1210 SAMTools SNP 359526 359526 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1210 SAMTools SNP 359529 359529 58.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1210 SAMTools SNP 359961 359961 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.33%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold1212 SAMTools SNP 982 982 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 1604 1604 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 1711 1711 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 1747 1747 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 10401 10401 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1212 SAMTools SNP 10433 10433 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 11146 11146 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1212 SAMTools SNP 11166 11166 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1212 SAMTools SNP 11187 11187 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.071%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1212 SAMTools SNP 11306 11306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 11700 11700 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C223:94 scaffold1212 SAMTools SNP 12607 12607 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 13245 13245 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C157:85 scaffold1212 SAMTools SNP 13272 13272 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold1212 SAMTools SNP 13767 13767 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1212 SAMTools SNP 15568 15568 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1212 SAMTools SNP 19317 19317 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold1212 SAMTools SNP 19409 19409 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1212 SAMTools SNP 19849 19849 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1212 SAMTools SNP 19868 19868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 20231 20231 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 22088 22088 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1212 SAMTools SNP 22164 22164 66.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1212 SAMTools SNP 24266 24266 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1212 SAMTools SNP 24388 24388 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1212 SAMTools SNP 27561 27561 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1212 SAMTools SNP 28677 28677 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 28723 28723 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 30142 30142 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C0.00022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C40:43 scaffold1212 SAMTools SNP 30536 30536 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D44%3BFQ%3D46%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C73:76 scaffold1212 SAMTools SNP 30569 30569 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1212 SAMTools SNP 30999 30999 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1212 SAMTools SNP 31027 31027 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1212 SAMTools SNP 31194 31194 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C183:82 scaffold1212 SAMTools SNP 31263 31263 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0043%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C185:79 scaffold1212 SAMTools SNP 32583 32583 15.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1212 SAMTools SNP 32614 32614 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 32669 32669 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1212 SAMTools SNP 33268 33268 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1212 SAMTools SNP 33849 33849 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1212 SAMTools SNP 34107 34107 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1212 SAMTools SNP 34658 34658 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1212 SAMTools SNP 34959 34959 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1212 SAMTools SNP 34975 34975 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1212 SAMTools SNP 35125 35125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 35152 35152 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1212 SAMTools SNP 35482 35482 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1212 SAMTools SNP 35571 35571 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1212 SAMTools SNP 38161 38161 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1212 SAMTools SNP 40219 40219 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 40220 40220 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 42377 42377 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1212 SAMTools SNP 42808 42808 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.22%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C254:99 scaffold1212 SAMTools SNP 43242 43242 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold1212 SAMTools SNP 43522 43522 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold1212 SAMTools SNP 43847 43847 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1212 SAMTools SNP 45928 45928 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C182:99 scaffold1212 SAMTools SNP 45954 45954 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1212 SAMTools SNP 46135 46135 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1212 SAMTools SNP 46138 46138 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 46451 46451 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 47621 47621 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 47949 47949 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1212 SAMTools SNP 47994 47994 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1212 SAMTools SNP 48564 48564 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1212 SAMTools SNP 48569 48569 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1212 SAMTools SNP 48845 48845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1212 SAMTools SNP 48856 48856 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1212 SAMTools SNP 49235 49235 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1212 SAMTools SNP 49287 49287 29.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1212 SAMTools SNP 49794 49794 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1212 SAMTools SNP 49838 49838 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C134:59 scaffold1212 SAMTools SNP 50298 50298 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1212 SAMTools SNP 50677 50677 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1212 SAMTools SNP 50737 50737 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 51080 51080 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 51086 51086 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 51342 51342 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 54489 54489 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C13%2C15%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.79%2C6.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1212 SAMTools SNP 55093 55093 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1212 SAMTools SNP 56084 56084 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1212 SAMTools SNP 56097 56097 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1212 SAMTools SNP 56372 56372 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1212 SAMTools SNP 56706 56706 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1212 SAMTools SNP 56715 56715 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1212 SAMTools SNP 58462 58462 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1212 SAMTools SNP 59266 59266 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 60188 60188 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1212 SAMTools SNP 60306 60306 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1212 SAMTools SNP 66476 66476 20.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1212 SAMTools SNP 67072 67072 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.17%2C4.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1212 SAMTools SNP 67582 67582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1212 SAMTools SNP 68035 68035 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold1212 SAMTools SNP 68065 68065 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1212 SAMTools SNP 68069 68069 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1212 SAMTools SNP 68441 68441 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1212 SAMTools SNP 68465 68465 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold1212 SAMTools SNP 70658 70658 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 70664 70664 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 72933 72933 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1212 SAMTools SNP 72957 72957 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1212 SAMTools SNP 74101 74101 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1212 SAMTools SNP 74103 74103 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1212 SAMTools SNP 74116 74116 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 76166 76166 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1212 SAMTools SNP 76250 76250 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1212 SAMTools SNP 76686 76686 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1212 SAMTools SNP 76690 76690 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C0.3%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1212 SAMTools SNP 77999 77999 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C0%2C45%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C9.6e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1212 SAMTools SNP 78238 78238 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.067%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C238:99 scaffold1212 SAMTools SNP 78247 78247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1212 SAMTools SNP 78602 78602 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C30%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1212 SAMTools SNP 87665 87665 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1212 SAMTools SNP 92231 92231 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1212 SAMTools SNP 92517 92517 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1212 SAMTools SNP 93011 93011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1212 SAMTools SNP 93020 93020 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1212 SAMTools SNP 93236 93236 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1212 SAMTools SNP 93674 93674 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1212 SAMTools SNP 95904 95904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1212 SAMTools SNP 96131 96131 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C28%2C36%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.08%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 96143 96143 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C37%2C24%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 97276 97276 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C55%2C168%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 97294 97294 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C49%2C164%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 97498 97498 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C162%2C11%2C169%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.039%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 110473 110473 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1212 SAMTools SNP 110858 110858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1212 SAMTools SNP 110885 110885 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1212 SAMTools SNP 110903 110903 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1.8e-07%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1212 SAMTools SNP 111274 111274 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1212 SAMTools SNP 111298 111298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1212 SAMTools SNP 111340 111340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1212 SAMTools SNP 111586 111586 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1212 SAMTools SNP 111811 111811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1212 SAMTools SNP 111962 111962 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 112387 112387 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1212 SAMTools SNP 112746 112746 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1212 SAMTools SNP 112785 112785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1212 SAMTools SNP 112803 112803 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1212 SAMTools SNP 112824 112824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1212 SAMTools SNP 114129 114129 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1212 SAMTools SNP 114320 114320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C3%3BMQ%3D48%3BFQ%3D27%3BPV4%3D1%2C0.32%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1212 SAMTools SNP 114350 114350 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C24%2C0:45 scaffold1212 SAMTools SNP 114383 114383 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C182:99 scaffold1212 SAMTools SNP 114389 114389 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1212 SAMTools SNP 114552 114552 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 114594 114594 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1212 SAMTools SNP 114623 114623 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1212 SAMTools SNP 114954 114954 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1212 SAMTools SNP 115020 115020 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1212 SAMTools SNP 115041 115041 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1212 SAMTools SNP 115485 115485 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1212 SAMTools SNP 115530 115530 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C24%2C0:45 scaffold1212 SAMTools SNP 115668 115668 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.8%3BPV4%3D1%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C77:80 scaffold1212 SAMTools SNP 115699 115699 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 26910 26910 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1213 SAMTools SNP 31775 31775 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1213 SAMTools SNP 31886 31886 4.11 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1213 SAMTools SNP 32032 32032 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1213 SAMTools SNP 33640 33640 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1213 SAMTools SNP 48348 48348 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1213 SAMTools SNP 49169 49169 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 57494 57494 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1213 SAMTools SNP 57497 57497 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 57632 57632 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.058%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1213 SAMTools SNP 62181 62181 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1213 SAMTools SNP 69681 69681 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.12%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C121:99 scaffold1213 SAMTools SNP 81719 81719 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 88188 88188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D725%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C378%2C26%2C230%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 88206 88206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D674%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C372%2C3%2C243%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 88257 88257 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C101%2C0%2C17%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C249:58 scaffold1213 SAMTools SNP 88691 88691 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.13%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1213 SAMTools SNP 88703 88703 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1213 SAMTools SNP 89676 89676 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1213 SAMTools SNP 91076 91076 18.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1213 SAMTools SNP 91478 91478 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C35:38 scaffold1213 SAMTools SNP 116871 116871 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1213 SAMTools SNP 124326 124326 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1213 SAMTools SNP 125298 125298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 125337 125337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 127500 127500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C19%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1213 SAMTools SNP 131851 131851 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1213 SAMTools SNP 136039 136039 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 137082 137082 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C34%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 137711 137711 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C15%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 137888 137888 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.15%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 138210 138210 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 138445 138445 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.079%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 138505 138505 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C7%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.44%2C0.49%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1213 SAMTools SNP 138514 138514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1213 SAMTools SNP 139090 139090 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 139125 139125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 139402 139402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 139881 139881 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 140220 140220 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C26%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.068%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 141214 141214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 141628 141628 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.081%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142337 142337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142352 142352 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142421 142421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142448 142448 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142647 142647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C14%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 142674 142674 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 144066 144066 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C152:99 scaffold1213 SAMTools SNP 144551 144551 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold1213 SAMTools SNP 145314 145314 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 145331 145331 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 145382 145382 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 145388 145388 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1213 SAMTools SNP 146505 146505 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C163:93 scaffold1213 SAMTools SNP 146909 146909 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold1213 SAMTools SNP 153871 153871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 153907 153907 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 161063 161063 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1213 SAMTools SNP 161618 161618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 164832 164832 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D43%3BFQ%3D6.99%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C33:36 scaffold1213 SAMTools SNP 181201 181201 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1213 SAMTools SNP 183304 183304 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 189543 189543 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C227:99 scaffold1213 SAMTools SNP 189558 189558 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.4%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C165:99 scaffold1213 SAMTools SNP 189564 189564 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C142:99 scaffold1213 SAMTools SNP 189706 189706 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold1213 SAMTools SNP 199245 199245 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C36%2C0:69 scaffold1213 SAMTools SNP 201556 201556 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 201811 201811 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 202097 202097 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1213 SAMTools SNP 208773 208773 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1213 SAMTools SNP 208786 208786 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1213 SAMTools SNP 210048 210048 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 210288 210288 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 210313 210313 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 212645 212645 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 212690 212690 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1213 SAMTools SNP 213787 213787 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.076%2C0.00012%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C212:50 scaffold1213 SAMTools SNP 214881 214881 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold1213 SAMTools SNP 215028 215028 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1213 SAMTools SNP 215143 215143 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1213 SAMTools SNP 216342 216342 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1213 SAMTools SNP 216749 216749 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1213 SAMTools SNP 216872 216872 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 217936 217936 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold1213 SAMTools SNP 218017 218017 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1213 SAMTools SNP 219904 219904 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C7.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C153:54 scaffold1213 SAMTools SNP 219916 219916 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1213 SAMTools SNP 223615 223615 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C16%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.52%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1213 SAMTools SNP 224913 224913 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold1213 SAMTools SNP 224997 224997 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D53.9%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C85:84 scaffold1213 SAMTools SNP 225048 225048 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1213 SAMTools SNP 226901 226901 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1213 SAMTools SNP 226912 226912 85.5 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C137%2C146%2C0%2C134:21 scaffold1213 SAMTools SNP 229517 229517 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1213 SAMTools SNP 232661 232661 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1213 SAMTools SNP 232770 232770 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.036%2C3.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1213 SAMTools SNP 232881 232881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C12%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1213 SAMTools SNP 233094 233094 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 233141 233141 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1213 SAMTools SNP 234126 234126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 234127 234127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 234534 234534 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.47%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C253:68 scaffold1213 SAMTools SNP 235156 235156 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 235165 235165 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 235345 235345 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1213 SAMTools SNP 235917 235917 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 236073 236073 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 236490 236490 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 236587 236587 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.068%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1213 SAMTools SNP 236863 236863 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 244391 244391 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold1213 SAMTools SNP 244435 244435 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold1213 SAMTools SNP 244586 244586 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C24%2C0:45 scaffold1213 SAMTools SNP 244770 244770 7.59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1213 SAMTools SNP 245732 245732 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.0031%2C1.8e-12%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C193:64 scaffold1213 SAMTools SNP 246077 246077 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.74%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1213 SAMTools SNP 246103 246103 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C16%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1213 SAMTools SNP 247533 247533 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 249150 249150 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1213 SAMTools SNP 249177 249177 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1213 SAMTools SNP 253495 253495 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1213 SAMTools SNP 253764 253764 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1213 SAMTools SNP 254373 254373 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1213 SAMTools SNP 254528 254528 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 255882 255882 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C17%2C38%2C8%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.1%2C4.7e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1213 SAMTools SNP 256556 256556 35.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1213 SAMTools SNP 260507 260507 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1213 SAMTools SNP 261094 261094 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1213 SAMTools SNP 261097 261097 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1213 SAMTools SNP 265791 265791 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1213 SAMTools SNP 266595 266595 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1213 SAMTools SNP 268165 268165 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0013%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C142:61 scaffold1213 SAMTools SNP 268201 268201 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C170:99 scaffold1213 SAMTools SNP 269222 269222 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold1213 SAMTools SNP 269362 269362 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1213 SAMTools SNP 269403 269403 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 269407 269407 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 271180 271180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1213 SAMTools SNP 272204 272204 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1213 SAMTools SNP 272205 272205 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1213 SAMTools SNP 272223 272223 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C23%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.017%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C105:99 scaffold1213 SAMTools SNP 272380 272380 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C25%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C12:15 scaffold1213 SAMTools SNP 273593 273593 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C96%2C0:99 scaffold1213 SAMTools SNP 274115 274115 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1213 SAMTools SNP 274373 274373 22.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1213 SAMTools SNP 274397 274397 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C56:59 scaffold1213 SAMTools SNP 286655 286655 14.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1213 SAMTools SNP 289829 289829 20.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold1213 SAMTools SNP 295420 295420 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C24%2C0:45 scaffold1213 SAMTools SNP 295852 295852 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C18%2C0:33 scaffold1213 SAMTools SNP 295873 295873 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D42%3BFQ%3D86%3BPV4%3D1%2C0.14%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C152:99 scaffold1213 SAMTools SNP 296079 296079 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1213 SAMTools SNP 296115 296115 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C119:99 scaffold1213 SAMTools SNP 296995 296995 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1213 SAMTools SNP 297007 297007 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1213 SAMTools SNP 297070 297070 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1213 SAMTools SNP 297581 297581 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 309967 309967 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 310765 310765 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1213 SAMTools SNP 310802 310802 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1213 SAMTools SNP 310931 310931 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold1213 SAMTools SNP 311798 311798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1213 SAMTools SNP 311822 311822 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C30%2C0:57 scaffold1213 SAMTools SNP 312137 312137 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1213 SAMTools SNP 313140 313140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C12%3BMQ%3D49%3BFQ%3D157%3BPV4%3D0.52%2C0.036%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1213 SAMTools SNP 313156 313156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1213 SAMTools SNP 314597 314597 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C112:99 scaffold1213 SAMTools SNP 314627 314627 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1213 SAMTools SNP 316246 316246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1213 SAMTools SNP 316262 316262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.3%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1213 SAMTools SNP 322198 322198 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1213 SAMTools SNP 324698 324698 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1213 SAMTools SNP 325948 325948 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 366808 366808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 366831 366831 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 370205 370205 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 370224 370224 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1213 SAMTools SNP 378421 378421 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1213 SAMTools SNP 378953 378953 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5.4e-32%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1213 SAMTools SNP 378992 378992 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C0%2C12%3BMQ%3D48%3BFQ%3D152%3BPV4%3D0.021%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1213 SAMTools SNP 379173 379173 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0263%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C2%3BMQ%3D44%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1213 SAMTools SNP 381308 381308 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 381329 381329 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.087%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1213 SAMTools SNP 381341 381341 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 383066 383066 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 384181 384181 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1213 SAMTools SNP 387757 387757 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1213 SAMTools SNP 388049 388049 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1213 SAMTools SNP 390274 390274 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1213 SAMTools SNP 390275 390275 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1213 SAMTools SNP 394320 394320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 394454 394454 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1213 SAMTools SNP 394729 394729 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1213 SAMTools SNP 396964 396964 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00075%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1213 SAMTools SNP 396972 396972 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1213 SAMTools SNP 400443 400443 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.08%3BPV4%3D1%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C29:32 scaffold1213 SAMTools SNP 402347 402347 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 413173 413173 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1213 SAMTools SNP 436801 436801 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1213 SAMTools SNP 436841 436841 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1213 SAMTools SNP 512385 512385 96.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold1213 SAMTools SNP 512696 512696 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1213 SAMTools SNP 512712 512712 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 542012 542012 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.59%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C246:56 scaffold1213 SAMTools SNP 542138 542138 208 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C18%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.094%2C0.29%2C1%2C7.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1213 SAMTools SNP 544541 544541 54.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1213 SAMTools SNP 545077 545077 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 546096 546096 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C7%2C21%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.75%2C1e-32%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1213 SAMTools SNP 548028 548028 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C4%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1213 SAMTools SNP 549384 549384 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 550198 550198 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 550245 550245 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 553291 553291 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C45%2C0:85 scaffold1213 SAMTools SNP 553724 553724 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold1213 SAMTools SNP 553732 553732 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1213 SAMTools SNP 553946 553946 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 554461 554461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1213 SAMTools SNP 554743 554743 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C231:99 scaffold1213 SAMTools SNP 554782 554782 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C188:99 scaffold1213 SAMTools SNP 554953 554953 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold1213 SAMTools SNP 555493 555493 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1213 SAMTools SNP 556249 556249 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1213 SAMTools SNP 557113 557113 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1213 SAMTools SNP 558644 558644 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C99%2C0:99 scaffold1213 SAMTools SNP 558653 558653 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1213 SAMTools SNP 558667 558667 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold1213 SAMTools SNP 558683 558683 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C103%2C49:99 scaffold1213 SAMTools SNP 559390 559390 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1213 SAMTools SNP 559395 559395 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.4%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1213 SAMTools SNP 559762 559762 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 559823 559823 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.62%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1213 SAMTools SNP 559873 559873 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 562077 562077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C33%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1213 SAMTools SNP 562161 562161 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 562188 562188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1213 SAMTools SNP 562451 562451 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1213 SAMTools SNP 562632 562632 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C1%2C15%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1213 SAMTools SNP 562647 562647 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C0%2C20%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1213 SAMTools SNP 562923 562923 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C6.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 563281 563281 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1213 SAMTools SNP 563372 563372 6.17 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1213 SAMTools SNP 563445 563445 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1213 SAMTools SNP 563935 563935 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C19%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.47%2C1.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1213 SAMTools SNP 564651 564651 45.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold1213 SAMTools SNP 564671 564671 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C44%2C41%2C23%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C3.3e-72%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1213 SAMTools SNP 565799 565799 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 567403 567403 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 567460 567460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1213 SAMTools SNP 574942 574942 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C0.034%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C38:41 scaffold1213 SAMTools SNP 575073 575073 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 575086 575086 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 576348 576348 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1213 SAMTools SNP 619314 619314 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 632766 632766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 633395 633395 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C209:99 scaffold1213 SAMTools SNP 633509 633509 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C7.3e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C145:86 scaffold1213 SAMTools SNP 644834 644834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C17%2C18%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C0:67 scaffold1213 SAMTools SNP 646541 646541 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C114%2C10%2C30%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.2%2C0.081%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1213 SAMTools SNP 646568 646568 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C36%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1213 SAMTools SNP 646685 646685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C100%2C38%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 647013 647013 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C235%2C32%2C145%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 647049 647049 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 647073 647073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1213 SAMTools SNP 647538 647538 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C2.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C234:33 scaffold1213 SAMTools SNP 649160 649160 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1213 SAMTools SNP 649305 649305 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1213 SAMTools SNP 649338 649338 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1213 SAMTools SNP 649395 649395 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1213 SAMTools SNP 649398 649398 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1213 SAMTools SNP 649541 649541 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1213 SAMTools SNP 649911 649911 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C16%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C9.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1213 SAMTools SNP 650280 650280 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1213 SAMTools SNP 651179 651179 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 651184 651184 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 651308 651308 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1213 SAMTools SNP 651756 651756 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.075%2C2.4e-11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C147:99 scaffold1213 SAMTools SNP 651816 651816 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1213 SAMTools SNP 652261 652261 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1213 SAMTools SNP 652276 652276 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 652417 652417 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 652840 652840 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 656087 656087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1213 SAMTools SNP 656249 656249 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold1213 SAMTools SNP 656794 656794 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1213 SAMTools SNP 659576 659576 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 659587 659587 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1213 SAMTools SNP 659590 659590 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1213 SAMTools SNP 659858 659858 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C254:99 scaffold1213 SAMTools SNP 659912 659912 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1213 SAMTools SNP 659921 659921 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C148:99 scaffold1213 SAMTools SNP 660733 660733 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1213 SAMTools SNP 660736 660736 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1213 SAMTools SNP 663620 663620 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D53.5%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C84:83 scaffold1213 SAMTools SNP 663730 663730 37.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1213 SAMTools SNP 663873 663873 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C35:38 scaffold1213 SAMTools SNP 663935 663935 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 664252 664252 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 664804 664804 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1213 SAMTools SNP 665100 665100 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 665166 665166 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold1213 SAMTools SNP 665523 665523 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold1213 SAMTools SNP 665996 665996 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1213 SAMTools SNP 666002 666002 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1213 SAMTools SNP 666460 666460 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1213 SAMTools SNP 666530 666530 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1213 SAMTools SNP 666559 666559 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1213 SAMTools SNP 667131 667131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1213 SAMTools SNP 667971 667971 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1213 SAMTools SNP 668270 668270 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1213 SAMTools SNP 668357 668357 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C238:99 scaffold1213 SAMTools SNP 668491 668491 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.53%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1213 SAMTools SNP 668551 668551 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1213 SAMTools SNP 668793 668793 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 668832 668832 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1213 SAMTools SNP 669095 669095 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1213 SAMTools SNP 669188 669188 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1213 SAMTools SNP 670114 670114 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1213 SAMTools SNP 670133 670133 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 671019 671019 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C151:99 scaffold1213 SAMTools SNP 671252 671252 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1213 SAMTools SNP 671324 671324 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.54%2C0.054%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1213 SAMTools SNP 671849 671849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1213 SAMTools SNP 671858 671858 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 672094 672094 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.47%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1213 SAMTools SNP 672120 672120 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1213 SAMTools SNP 672795 672795 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C69%2C0:93 scaffold1213 SAMTools SNP 673359 673359 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 678605 678605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D418%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C401%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 678616 678616 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D370%2C31%2C117%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.00094%2C1%2C4.6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 681043 681043 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 681133 681133 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D914%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C125%2C91%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 681366 681366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1227%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C551%2C541%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 681410 681410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1414%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C248%2C329%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-13%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 681761 681761 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1279%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D324%2C631%2C127%2C60%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1.1e-17%2C0.041%2C1%2C2.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1213 SAMTools SNP 682430 682430 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1213 SAMTools SNP 691675 691675 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1213 SAMTools SNP 691705 691705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1213 SAMTools SNP 692205 692205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 696696 696696 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1213 SAMTools SNP 696705 696705 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 698293 698293 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1213 SAMTools SNP 698302 698302 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1213 SAMTools SNP 700005 700005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 700017 700017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 700690 700690 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1213 SAMTools SNP 701470 701470 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1213 SAMTools SNP 701659 701659 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.61%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1213 SAMTools SNP 701677 701677 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 702115 702115 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1213 SAMTools SNP 703144 703144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 703189 703189 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1213 SAMTools SNP 704933 704933 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1213 SAMTools SNP 706174 706174 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1213 SAMTools SNP 707218 707218 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 707302 707302 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 707309 707309 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C21%2C0:39 scaffold1213 SAMTools SNP 707909 707909 90 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.0035%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C236:99 scaffold1213 SAMTools SNP 707936 707936 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C4%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1213 SAMTools SNP 708224 708224 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C17%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0033%2C0.36%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1213 SAMTools SNP 708251 708251 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1213 SAMTools SNP 708542 708542 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 708584 708584 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C11:14 scaffold1213 SAMTools SNP 709058 709058 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1213 SAMTools SNP 709059 709059 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1213 SAMTools SNP 709440 709440 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C1%3BMQ%3D47%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1213 SAMTools SNP 709509 709509 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 712375 712375 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1213 SAMTools SNP 714006 714006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1213 SAMTools SNP 716172 716172 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 717082 717082 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C7.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C187:64 scaffold1213 SAMTools SNP 717396 717396 48 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C48%2C39%2C81%2C0%2C75:16 scaffold1213 SAMTools SNP 717697 717697 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1213 SAMTools SNP 717825 717825 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 718241 718241 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1213 SAMTools SNP 721546 721546 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C1%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1213 SAMTools SNP 721550 721550 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 722837 722837 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1213 SAMTools SNP 724201 724201 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.55%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1213 SAMTools SNP 726885 726885 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1213 SAMTools SNP 728409 728409 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 729074 729074 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold1213 SAMTools SNP 730919 730919 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1213 SAMTools SNP 730928 730928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1213 SAMTools SNP 734549 734549 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 734604 734604 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1213 SAMTools SNP 738184 738184 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1213 SAMTools SNP 741022 741022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C18%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1213 SAMTools SNP 749921 749921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1213 SAMTools SNP 750580 750580 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1213 SAMTools SNP 753192 753192 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1213 SAMTools SNP 755977 755977 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1213 SAMTools SNP 758123 758123 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C28%2C195%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 762395 762395 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1213 SAMTools SNP 763260 763260 28.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1213 SAMTools SNP 767809 767809 22.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1213 SAMTools SNP 768473 768473 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 770176 770176 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C43%2C23%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 770224 770224 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C94%2C11%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 771030 771030 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C85%2C15%2C15%3BMQ%3D50%3BFQ%3D87%3BPV4%3D4.3e-05%2C1e-09%2C1%2C1.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1213 SAMTools SNP 771713 771713 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 772362 772362 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C42%2C2%2C49%3BMQ%3D50%3BFQ%3D219%3BPV4%3D4.3e-15%2C1%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1213 SAMTools SNP 772770 772770 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C35%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1213 SAMTools SNP 773357 773357 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1213 SAMTools SNP 773399 773399 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C14%2C61%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 773563 773563 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C4%2C98%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 773581 773581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C6%2C77%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.5e-16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 774701 774701 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C99%2C0:99 scaffold1213 SAMTools SNP 775243 775243 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C18%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C5.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1213 SAMTools SNP 775380 775380 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold1213 SAMTools SNP 777146 777146 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C41:44 scaffold1213 SAMTools SNP 778772 778772 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1213 SAMTools SNP 778773 778773 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1213 SAMTools SNP 781397 781397 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.9e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C69:72 scaffold1213 SAMTools SNP 788042 788042 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold1213 SAMTools SNP 788244 788244 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1213 SAMTools SNP 788750 788750 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 788813 788813 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1213 SAMTools SNP 789347 789347 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1213 SAMTools SNP 789388 789388 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1213 SAMTools SNP 789967 789967 58.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1213 SAMTools SNP 790059 790059 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C24%2C0:45 scaffold1213 SAMTools SNP 790611 790611 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C27%2C0:51 scaffold1213 SAMTools SNP 792927 792927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1213 SAMTools SNP 794575 794575 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.31%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C243:99 scaffold1213 SAMTools SNP 795763 795763 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 800497 800497 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1213 SAMTools SNP 800585 800585 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 801081 801081 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold1213 SAMTools SNP 801228 801228 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C96%2C0:99 scaffold1213 SAMTools SNP 801491 801491 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.055%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1213 SAMTools SNP 802142 802142 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.023%2C0.00043%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1213 SAMTools SNP 802154 802154 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C27%2C0:51 scaffold1213 SAMTools SNP 802425 802425 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C90%2C0:99 scaffold1213 SAMTools SNP 802489 802489 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C30%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C141%2C0:99 scaffold1213 SAMTools SNP 802596 802596 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C29%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.098%2C8.5e-61%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1213 SAMTools SNP 802719 802719 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C132%2C0:99 scaffold1213 SAMTools SNP 803077 803077 11.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1213 SAMTools SNP 807019 807019 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 807230 807230 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 807871 807871 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1213 SAMTools SNP 807898 807898 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 807963 807963 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1213 SAMTools SNP 808179 808179 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold1213 SAMTools SNP 808198 808198 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 808409 808409 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1213 SAMTools SNP 808741 808741 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D50.6%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C79:81 scaffold1213 SAMTools SNP 808753 808753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 809030 809030 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1213 SAMTools SNP 811118 811118 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 811326 811326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C57%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1213 SAMTools SNP 811774 811774 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 812138 812138 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C54%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1213 SAMTools SNP 812808 812808 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1213 SAMTools SNP 812838 812838 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1213 SAMTools SNP 813039 813039 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1213 SAMTools SNP 813242 813242 96 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.12%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1213 SAMTools SNP 813258 813258 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.12%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1213 SAMTools SNP 813827 813827 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C308%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 813828 813828 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C307%2C27%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 835190 835190 77.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold1213 SAMTools SNP 835245 835245 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.015%2C1.9e-15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C172:41 scaffold1213 SAMTools SNP 863085 863085 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1213 SAMTools SNP 876860 876860 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1213 SAMTools SNP 877150 877150 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1213 SAMTools SNP 877733 877733 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C39%2C0:75 scaffold1213 SAMTools SNP 877763 877763 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C75%2C0:99 scaffold1213 SAMTools SNP 878194 878194 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D32.9%3BPV4%3D0.018%2C3.6e-09%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C60:63 scaffold1213 SAMTools SNP 879305 879305 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C42%2C0:74 scaffold1213 SAMTools SNP 937373 937373 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.18%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C126:46 scaffold1213 SAMTools SNP 938518 938518 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 946453 946453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1213 SAMTools SNP 946699 946699 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1213 SAMTools SNP 947122 947122 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C17%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1213 SAMTools SNP 947526 947526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 947549 947549 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1213 SAMTools SNP 948065 948065 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.086%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1213 SAMTools SNP 948379 948379 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1213 SAMTools SNP 948681 948681 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1213 SAMTools SNP 948696 948696 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 948768 948768 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 951330 951330 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 953633 953633 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1213 SAMTools SNP 953708 953708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 953735 953735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1213 SAMTools SNP 954386 954386 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 954435 954435 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 954518 954518 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold1213 SAMTools SNP 954664 954664 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1213 SAMTools SNP 960714 960714 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 960725 960725 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 962680 962680 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1213 SAMTools SNP 969839 969839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 970819 970819 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C210:99 scaffold1213 SAMTools SNP 970852 970852 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold1213 SAMTools SNP 970881 970881 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1213 SAMTools SNP 971399 971399 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1213 SAMTools SNP 972434 972434 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 973241 973241 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C7%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C6.4e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1213 SAMTools SNP 973337 973337 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 976758 976758 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C6.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 976785 976785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C22%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1213 SAMTools SNP 977097 977097 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 977458 977458 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1213 SAMTools SNP 977536 977536 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1213 SAMTools SNP 977552 977552 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 977814 977814 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0013%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1213 SAMTools SNP 978117 978117 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1213 SAMTools SNP 978396 978396 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1213 SAMTools SNP 978471 978471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 983427 983427 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1213 SAMTools SNP 983466 983466 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C30%2C0:57 scaffold1213 SAMTools SNP 991278 991278 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C235:99 scaffold1213 SAMTools SNP 991918 991918 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C44%2C2%3BMQ%3D49%3BFQ%3D168%3BPV4%3D0.59%2C1.1e-21%2C0.06%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1213 SAMTools SNP 992026 992026 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C15%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 992278 992278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C50%2C11%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 992879 992879 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1213 SAMTools SNP 993013 993013 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C39%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C70%2C0:83 scaffold1213 SAMTools SNP 993840 993840 14.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold1213 SAMTools SNP 993894 993894 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold1213 SAMTools SNP 996797 996797 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C71:74 scaffold1213 SAMTools SNP 997131 997131 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 997219 997219 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1213 SAMTools SNP 997260 997260 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C216:99 scaffold1213 SAMTools SNP 1002592 1002592 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D816%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D321%2C236%2C258%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D8e-47%2C1%2C1%2C1.9e-33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1213 SAMTools SNP 1002902 1002902 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1233%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C504%2C34%2C663%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.022%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1003223 1003223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1213 SAMTools SNP 1004034 1004034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1641%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D476%2C177%2C834%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.7e-18%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1005190 1005190 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2691%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D964%2C39%2C1434%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1005579 1005579 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.62%2C1.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1213 SAMTools SNP 1007761 1007761 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 1027409 1027409 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold1213 SAMTools SNP 1033183 1033183 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1213 SAMTools SNP 1035175 1035175 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.25%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1213 SAMTools SNP 1035178 1035178 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1213 SAMTools SNP 1035753 1035753 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C192:99 scaffold1213 SAMTools SNP 1036397 1036397 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1213 SAMTools SNP 1036712 1036712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1213 SAMTools SNP 1036748 1036748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1213 SAMTools SNP 1037079 1037079 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1213 SAMTools SNP 1037293 1037293 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.045%2C0.42%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C188:99 scaffold1213 SAMTools SNP 1041629 1041629 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1213 SAMTools SNP 1042974 1042974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1213 SAMTools SNP 1045773 1045773 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1045818 1045818 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1.6e-12%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1046091 1046091 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold1213 SAMTools SNP 1047828 1047828 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1213 SAMTools SNP 1049815 1049815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 1050425 1050425 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C14%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1050901 1050901 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C8%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0044%2C1%2C1%2C8.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1213 SAMTools SNP 1052892 1052892 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1213 SAMTools SNP 1078378 1078378 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D25%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.075%2C2.4e-13%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1213 SAMTools SNP 1079794 1079794 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.67%2C0.19%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1213 SAMTools SNP 1080019 1080019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1081247 1081247 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C18%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.27%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1213 SAMTools SNP 1081271 1081271 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C18%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.14%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1213 SAMTools SNP 1081782 1081782 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.23%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1081796 1081796 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.26%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1213 SAMTools SNP 1082262 1082262 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C0.015%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1213 SAMTools SNP 1082557 1082557 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.64%2C0.4%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1213 SAMTools SNP 1082572 1082572 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.22%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1213 SAMTools SNP 1082668 1082668 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.68%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1213 SAMTools SNP 1082674 1082674 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1213 SAMTools SNP 1084304 1084304 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 1085439 1085439 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C112:63 scaffold1213 SAMTools SNP 1085447 1085447 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold1213 SAMTools SNP 1085465 1085465 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold1213 SAMTools SNP 1086300 1086300 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1213 SAMTools SNP 1086427 1086427 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C32%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.058%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1213 SAMTools SNP 1086973 1086973 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 1087240 1087240 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold1213 SAMTools SNP 1087243 1087243 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1213 SAMTools SNP 1088409 1088409 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 1091173 1091173 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold1213 SAMTools SNP 1091784 1091784 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1213 SAMTools SNP 1091948 1091948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C16%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1213 SAMTools SNP 1092097 1092097 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1213 SAMTools SNP 1092121 1092121 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C35%2C62%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1.2e-10%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1213 SAMTools SNP 1096860 1096860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C1%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1213 SAMTools SNP 1097315 1097315 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.086%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1213 SAMTools SNP 1097332 1097332 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 1097346 1097346 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1213 SAMTools SNP 1097971 1097971 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D46.9%3BPV4%3D0.25%2C0.00026%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C76:77 scaffold1213 SAMTools SNP 1130805 1130805 11.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-7%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C21:25 scaffold1213 SAMTools SNP 1132241 1132241 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C3%2C0:6 scaffold1213 SAMTools SNP 1132698 1132698 8.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1213 SAMTools SNP 1132980 1132980 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C42%2C0:81 scaffold1213 SAMTools SNP 1133073 1133073 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C145:41 scaffold1213 SAMTools SNP 1135081 1135081 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1213 SAMTools SNP 1135966 1135966 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold1213 SAMTools SNP 1136013 1136013 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1213 SAMTools SNP 1136020 1136020 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1213 SAMTools SNP 1231368 1231368 9.08 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1213 SAMTools SNP 1236580 1236580 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1213 SAMTools SNP 1236684 1236684 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1213 SAMTools SNP 1242671 1242671 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1213 SAMTools SNP 1244109 1244109 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1213 SAMTools SNP 1246199 1246199 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 1246358 1246358 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1213 SAMTools SNP 1248026 1248026 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1213 SAMTools SNP 1248469 1248469 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1213 SAMTools SNP 1248551 1248551 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D42%3BFQ%3D-34%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C7%2C0:12 scaffold1213 SAMTools SNP 1248956 1248956 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold1213 SAMTools SNP 1249029 1249029 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1213 SAMTools SNP 1251049 1251049 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.32%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C26:29 scaffold1213 SAMTools SNP 1251327 1251327 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1213 SAMTools SNP 1306260 1306260 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C45%2C0:87 scaffold1213 SAMTools SNP 1306788 1306788 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.72%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1213 SAMTools SNP 1306809 1306809 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1213 SAMTools SNP 1345350 1345350 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold1213 SAMTools SNP 1364613 1364613 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C84%2C0:99 scaffold1213 SAMTools SNP 1364837 1364837 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1214 SAMTools SNP 208 208 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 209 209 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 587 587 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1214 SAMTools SNP 644 644 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C62%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1214 SAMTools SNP 1464 1464 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C26%2C7%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.018%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1214 SAMTools SNP 1744 1744 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C117%2C12%3BMQ%3D50%3BFQ%3D-228%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C201%2C0:99 scaffold1214 SAMTools SNP 1753 1753 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1214 SAMTools SNP 1834 1834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1214 SAMTools SNP 1874 1874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1214 SAMTools SNP 2493 2493 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C31%2C1%2C11%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.26%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1214 SAMTools SNP 6486 6486 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C145:99 scaffold1214 SAMTools SNP 6682 6682 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C19%2C12%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1214 SAMTools SNP 6697 6697 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C4%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.72%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1214 SAMTools SNP 6703 6703 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.037%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 7357 7357 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C15%2C25%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.18%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1214 SAMTools SNP 7428 7428 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 7453 7453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 7792 7792 203 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C5%2C5%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1214 SAMTools SNP 8309 8309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 8803 8803 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 9445 9445 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.68%2C4.4e-12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1214 SAMTools SNP 10572 10572 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold1214 SAMTools SNP 10585 10585 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1214 SAMTools SNP 11101 11101 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1214 SAMTools SNP 11367 11367 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 11861 11861 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 11881 11881 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 11925 11925 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.27%2C0.0044%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1214 SAMTools SNP 12029 12029 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1214 SAMTools SNP 12047 12047 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 12098 12098 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C3%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1214 SAMTools SNP 12492 12492 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.47%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1214 SAMTools SNP 13878 13878 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1214 SAMTools SNP 13879 13879 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1214 SAMTools SNP 13923 13923 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 14140 14140 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 14368 14368 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1214 SAMTools SNP 16063 16063 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 16100 16100 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00063%2C8.5e-24%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C238:99 scaffold1214 SAMTools SNP 16178 16178 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 16189 16189 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 19210 19210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1214 SAMTools SNP 19252 19252 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold1214 SAMTools SNP 19285 19285 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1214 SAMTools SNP 23492 23492 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1214 SAMTools SNP 28164 28164 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 34058 34058 63.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C6%2C0:10 scaffold1214 SAMTools SNP 34073 34073 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1214 SAMTools SNP 34190 34190 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.6e-11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C107:33 scaffold1214 SAMTools SNP 38607 38607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1214 SAMTools SNP 38625 38625 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.087%2C0.46%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1214 SAMTools SNP 40981 40981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C50%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 42066 42066 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C21%2C1%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1214 SAMTools SNP 42978 42978 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1214 SAMTools SNP 44097 44097 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.083%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C226:39 scaffold1214 SAMTools SNP 44154 44154 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1214 SAMTools SNP 45882 45882 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C7.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C160:50 scaffold1214 SAMTools SNP 48964 48964 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1214 SAMTools SNP 49336 49336 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.054%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1214 SAMTools SNP 49437 49437 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.68%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1214 SAMTools SNP 49672 49672 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 49738 49738 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 50785 50785 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1214 SAMTools SNP 51551 51551 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.012%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1214 SAMTools SNP 51557 51557 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.00095%2C0.0011%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1214 SAMTools SNP 51831 51831 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1214 SAMTools SNP 51849 51849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1214 SAMTools SNP 52127 52127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 52198 52198 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1214 SAMTools SNP 52227 52227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1214 SAMTools SNP 52625 52625 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00089%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1214 SAMTools SNP 52706 52706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1214 SAMTools SNP 52709 52709 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1214 SAMTools SNP 52960 52960 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.002%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C201:60 scaffold1214 SAMTools SNP 53729 53729 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1214 SAMTools SNP 54105 54105 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1214 SAMTools SNP 54149 54149 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1214 SAMTools SNP 54231 54231 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.033%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C174:66 scaffold1214 SAMTools SNP 54300 54300 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C91:94 scaffold1214 SAMTools SNP 54581 54581 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C251:69 scaffold1214 SAMTools SNP 54598 54598 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1214 SAMTools SNP 54811 54811 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.59%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1214 SAMTools SNP 55070 55070 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1214 SAMTools SNP 55073 55073 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C12%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.49%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold1214 SAMTools SNP 55679 55679 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C202:99 scaffold1214 SAMTools SNP 55708 55708 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1214 SAMTools SNP 55722 55722 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.0078%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1214 SAMTools SNP 55759 55759 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.077%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1214 SAMTools SNP 55988 55988 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1214 SAMTools SNP 56024 56024 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1214 SAMTools SNP 56048 56048 52.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold1214 SAMTools SNP 56207 56207 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0033%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1214 SAMTools SNP 56406 56406 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.086%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1214 SAMTools SNP 58496 58496 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1214 SAMTools SNP 59254 59254 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.24%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1214 SAMTools SNP 61242 61242 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.39%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C104:99 scaffold1214 SAMTools SNP 61258 61258 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.36%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1214 SAMTools SNP 66606 66606 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 66617 66617 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 67106 67106 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 67128 67128 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 67599 67599 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1214 SAMTools SNP 68800 68800 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C1%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.47%2C0.083%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1214 SAMTools SNP 68814 68814 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C42%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold1214 SAMTools SNP 73102 73102 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1214 SAMTools SNP 73104 73104 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1214 SAMTools SNP 73122 73122 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 78642 78642 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 104946 104946 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C116:74 scaffold1214 SAMTools SNP 104948 104948 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 105545 105545 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.13%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 105566 105566 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C0%2C25%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1214 SAMTools SNP 105590 105590 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1214 SAMTools SNP 106359 106359 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1214 SAMTools SNP 110104 110104 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1214 SAMTools SNP 110119 110119 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold1214 SAMTools SNP 110602 110602 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.2%2C0.058%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1214 SAMTools SNP 110878 110878 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1214 SAMTools SNP 110879 110879 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold1214 SAMTools SNP 110923 110923 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C118:99 scaffold1214 SAMTools SNP 116193 116193 23.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold1214 SAMTools SNP 132914 132914 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C80:70 scaffold1214 SAMTools SNP 132933 132933 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1214 SAMTools SNP 134178 134178 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0035%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C79:31 scaffold1214 SAMTools SNP 134187 134187 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0035%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C73:31 scaffold1214 SAMTools SNP 134437 134437 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C1%3BMQ%3D45%3BFQ%3D-8.63%3BPV4%3D1%2C9.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C19:22 scaffold1214 SAMTools SNP 134557 134557 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D45%3BFQ%3D17%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C59:47 scaffold1214 SAMTools SNP 204281 204281 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 270387 270387 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 270410 270410 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 270861 270861 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C70:33 scaffold1214 SAMTools SNP 271188 271188 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1214 SAMTools SNP 271251 271251 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1214 SAMTools SNP 271464 271464 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 271651 271651 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1214 SAMTools SNP 271678 271678 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1214 SAMTools SNP 273100 273100 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1214 SAMTools SNP 273174 273174 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1214 SAMTools SNP 273198 273198 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1214 SAMTools SNP 273380 273380 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1214 SAMTools SNP 273985 273985 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1214 SAMTools SNP 282590 282590 34.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1214 SAMTools SNP 282640 282640 7.39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1214 SAMTools SNP 283813 283813 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C249:92 scaffold1214 SAMTools SNP 287151 287151 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold1214 SAMTools SNP 287339 287339 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1214 SAMTools SNP 287410 287410 33.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1214 SAMTools SNP 293967 293967 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1214 SAMTools SNP 293980 293980 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1214 SAMTools SNP 293987 293987 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1214 SAMTools SNP 298435 298435 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1214 SAMTools SNP 298484 298484 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.34%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold1214 SAMTools SNP 333980 333980 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1214 SAMTools SNP 337000 337000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1214 SAMTools SNP 337312 337312 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1214 SAMTools SNP 352298 352298 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1214 SAMTools SNP 371850 371850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 375086 375086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1214 SAMTools SNP 375254 375254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1214 SAMTools SNP 375301 375301 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D9.53%3BPV4%3D0.0079%2C0.34%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C36:39 scaffold1214 SAMTools SNP 376425 376425 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C27%2C0:51 scaffold1214 SAMTools SNP 376442 376442 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D31%3BFQ%3D-30%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C3%2C0:6 scaffold1214 SAMTools SNP 376473 376473 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D0.44%2C1%2C0.072%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold1214 SAMTools SNP 376904 376904 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C42:36 scaffold1214 SAMTools SNP 405995 405995 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1214 SAMTools SNP 406025 406025 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 35800 35800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 35815 35815 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 35922 35922 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 37974 37974 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.029%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C237:99 scaffold1217 SAMTools SNP 38398 38398 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.15%2C0.095%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C235:86 scaffold1217 SAMTools SNP 38416 38416 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1217 SAMTools SNP 38457 38457 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-05%2C0.35%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 40599 40599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.14%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 68113 68113 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold1217 SAMTools SNP 100533 100533 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C17%3BMQ%3D46%3BFQ%3D41%3BPV4%3D0.64%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1217 SAMTools SNP 117059 117059 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1217 SAMTools SNP 119940 119940 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1217 SAMTools SNP 120617 120617 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1217 SAMTools SNP 122316 122316 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 122852 122852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 169719 169719 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0363%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1217 SAMTools SNP 172399 172399 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1217 SAMTools SNP 172661 172661 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C0.49%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1217 SAMTools SNP 172827 172827 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1217 SAMTools SNP 172829 172829 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1217 SAMTools SNP 176505 176505 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 176534 176534 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 176623 176623 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1217 SAMTools SNP 177120 177120 17.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C5%2C0:8 scaffold1217 SAMTools SNP 177481 177481 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D29%3BFQ%3D5.95%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C43:31 scaffold1217 SAMTools SNP 177506 177506 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1217 SAMTools SNP 178526 178526 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 178585 178585 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 178668 178668 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 178677 178677 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 178933 178933 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 185921 185921 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1217 SAMTools SNP 186249 186249 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C26%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C252:99 scaffold1217 SAMTools SNP 186671 186671 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 188047 188047 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C30%2C0:57 scaffold1217 SAMTools SNP 188160 188160 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.073%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C127:99 scaffold1217 SAMTools SNP 188162 188162 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C167:37 scaffold1217 SAMTools SNP 189197 189197 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1217 SAMTools SNP 189211 189211 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1217 SAMTools SNP 189680 189680 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.58%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1217 SAMTools SNP 189699 189699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1217 SAMTools SNP 190197 190197 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 190622 190622 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 191127 191127 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1217 SAMTools SNP 192274 192274 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 192960 192960 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1217 SAMTools SNP 194350 194350 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1217 SAMTools SNP 195094 195094 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1217 SAMTools SNP 198639 198639 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C66%2C0:99 scaffold1217 SAMTools SNP 199354 199354 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1217 SAMTools SNP 199996 199996 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C214:75 scaffold1217 SAMTools SNP 202010 202010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1217 SAMTools SNP 203996 203996 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1217 SAMTools SNP 203999 203999 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1217 SAMTools SNP 209976 209976 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C60%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0056%2C4.3e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1217 SAMTools SNP 210258 210258 176 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C437%2C114%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C255%2C0%2C206%2C255%2C200:99 scaffold1217 SAMTools SNP 210548 210548 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1217 SAMTools SNP 211171 211171 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1217 SAMTools SNP 211214 211214 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C48%2C0:93 scaffold1217 SAMTools SNP 223148 223148 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1217 SAMTools SNP 223168 223168 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1217 SAMTools SNP 223691 223691 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C39%2C0:75 scaffold1217 SAMTools SNP 224060 224060 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold1217 SAMTools SNP 224069 224069 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C3:69 scaffold1217 SAMTools SNP 224562 224562 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.00015%2C2.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C101:44 scaffold1217 SAMTools SNP 224753 224753 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C200:96 scaffold1217 SAMTools SNP 225017 225017 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1217 SAMTools SNP 225029 225029 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1217 SAMTools SNP 225116 225116 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C3.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C92:95 scaffold1217 SAMTools SNP 225152 225152 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1217 SAMTools SNP 229753 229753 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C119%2C14%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 229834 229834 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0021%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 229994 229994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1217 SAMTools SNP 230128 230128 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1217 SAMTools SNP 230192 230192 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C2%2C91%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 231531 231531 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C30%2C57%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 233101 233101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C50%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-05%2C1%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1217 SAMTools SNP 233984 233984 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1217 SAMTools SNP 235983 235983 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1217 SAMTools SNP 245428 245428 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1219 SAMTools SNP 3946 3946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1219 SAMTools SNP 9431 9431 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1219 SAMTools SNP 9461 9461 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C22%2C0%3BMQ%3D48%3BFQ%3D212%3BPV4%3D0.49%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1219 SAMTools SNP 9950 9950 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C7%3BMQ%3D43%3BFQ%3D12.3%3BPV4%3D0.55%2C0.00077%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C196:41 scaffold1219 SAMTools SNP 10095 10095 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold1219 SAMTools SNP 18795 18795 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 23414 23414 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1219 SAMTools SNP 28766 28766 37.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1219 SAMTools SNP 28872 28872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1219 SAMTools SNP 30266 30266 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1219 SAMTools SNP 31102 31102 95 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C75%2C0%2C112%2C45%2C109:99 scaffold1219 SAMTools SNP 32611 32611 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1219 SAMTools SNP 33837 33837 37.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1219 SAMTools SNP 44916 44916 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1219 SAMTools SNP 45731 45731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 46382 46382 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1219 SAMTools SNP 47209 47209 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 47267 47267 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1219 SAMTools SNP 49173 49173 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1219 SAMTools SNP 51110 51110 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.028%2C8.2e-10%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C237:30 scaffold1219 SAMTools SNP 54151 54151 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1219 SAMTools SNP 55606 55606 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 57234 57234 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C140:99 scaffold1219 SAMTools SNP 59958 59958 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C49%2C93%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 59976 59976 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C14%2C72%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 61242 61242 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C94%2C76%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.38%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 62191 62191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C341%2C152%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 62266 62266 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D787%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D300%2C74%2C222%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.3%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 64994 64994 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C301%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 65027 65027 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C41%2C84%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 65030 65030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C130%2C41%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 65051 65051 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C35%2C7%2C11%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0039%2C0.13%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1219 SAMTools SNP 67655 67655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D365%2C49%2C163%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 67670 67670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D802%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D481%2C52%2C198%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-09%2C0.00013%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 68202 68202 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C6%2C138%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 68280 68280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 68281 68281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C59%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C0.38%2C0.45%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold1219 SAMTools SNP 68302 68302 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C50%3BMQ%3D48%3BFQ%3D-116%3BPV4%3D1%2C0.46%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold1219 SAMTools SNP 68630 68630 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D690%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C24%2C648%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 69182 69182 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 69189 69189 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 80405 80405 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C330%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 80468 80468 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C34%2C38%3BMQ%3D46%3BFQ%3D72%3BPV4%3D0.00058%2C0.02%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1219 SAMTools SNP 82747 82747 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1219 SAMTools SNP 82792 82792 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D48%3BFQ%3D140%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C228:99 scaffold1219 SAMTools SNP 85634 85634 19.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1219 SAMTools SNP 86102 86102 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1219 SAMTools SNP 86123 86123 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D46%3BFQ%3D50%3BPV4%3D0.4%2C1%2C0.19%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C122:80 scaffold1219 SAMTools SNP 86669 86669 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 88884 88884 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 89197 89197 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C4%2C74%2C328%3BMQ%3D50%3BFQ%3D56%3BPV4%3D7.2e-53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold1219 SAMTools SNP 91023 91023 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C6%2C25%3BMQ%3D16%3BFQ%3D50.3%3BPV4%3D0.078%2C1%2C0.39%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C79:80 scaffold1219 SAMTools SNP 91650 91650 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C21%2C21%3BMQ%3D27%3BFQ%3D139%3BPV4%3D0.83%2C1%2C0.084%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C203:99 scaffold1219 SAMTools SNP 91687 91687 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C16%2C5%3BMQ%3D35%3BFQ%3D112%3BPV4%3D0.73%2C0.27%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1219 SAMTools SNP 91805 91805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C13%2C18%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.2%2C0.48%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 91814 91814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C10%2C12%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 91820 91820 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C27%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1219 SAMTools SNP 91825 91825 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D0.29%2C0.19%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C34:37 scaffold1219 SAMTools SNP 92036 92036 20.1 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 92077 92077 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C25%2C132%2C28%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.88%2C0.085%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 92879 92879 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C55%2C0%2C27%3BMQ%3D33%3BFQ%3D138%3BPV4%3D0.32%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C166:99 scaffold1219 SAMTools SNP 93864 93864 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C2%2C30%3BMQ%3D34%3BFQ%3D136%3BPV4%3D1%2C1%2C0.00035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C227:99 scaffold1219 SAMTools SNP 95097 95097 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C28%3BMQ%3D36%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 95112 95112 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C29%2C45%2C3%3BMQ%3D45%3BFQ%3D66%3BPV4%3D0.068%2C0.42%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1219 SAMTools SNP 95139 95139 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C26%2C137%2C48%3BMQ%3D43%3BFQ%3D210%3BPV4%3D1%2C0.042%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1219 SAMTools SNP 95163 95163 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C57%2C80%2C25%3BMQ%3D44%3BFQ%3D149%3BPV4%3D0.5%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1219 SAMTools SNP 95188 95188 72.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D27%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C4%2C0:7 scaffold1219 SAMTools SNP 95781 95781 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C156%2C74%2C75%3BMQ%3D48%3BFQ%3D225%3BPV4%3D2.1e-06%2C0.17%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 95793 95793 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C159%2C71%2C77%3BMQ%3D48%3BFQ%3D225%3BPV4%3D5.1e-06%2C0.28%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 112506 112506 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold1219 SAMTools SNP 112641 112641 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 113403 113403 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1219 SAMTools SNP 113721 113721 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.019%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1219 SAMTools SNP 137993 137993 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 143086 143086 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1219 SAMTools SNP 143141 143141 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1219 SAMTools SNP 143677 143677 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1219 SAMTools SNP 143953 143953 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C96%2C0:99 scaffold1219 SAMTools SNP 144130 144130 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C9%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.7%2C3.3e-18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1219 SAMTools SNP 145040 145040 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1219 SAMTools SNP 145276 145276 84.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1219 SAMTools SNP 145435 145435 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1219 SAMTools SNP 146572 146572 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.4%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C131:55 scaffold1219 SAMTools SNP 146998 146998 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1219 SAMTools SNP 147029 147029 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1219 SAMTools SNP 147066 147066 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 149847 149847 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C166:99 scaffold1219 SAMTools SNP 150019 150019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1219 SAMTools SNP 150353 150353 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1219 SAMTools SNP 150432 150432 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C0.28%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C51:54 scaffold1219 SAMTools SNP 150447 150447 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1219 SAMTools SNP 150458 150458 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.081%2C0.00042%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1219 SAMTools SNP 150667 150667 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1219 SAMTools SNP 150949 150949 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.21%2C0.0071%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C180:99 scaffold1219 SAMTools SNP 150955 150955 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.29%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C213:70 scaffold1219 SAMTools SNP 151020 151020 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.095%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold1219 SAMTools SNP 151347 151347 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1219 SAMTools SNP 151618 151618 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1219 SAMTools SNP 151643 151643 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1219 SAMTools SNP 151834 151834 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 152043 152043 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1219 SAMTools SNP 157382 157382 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C27%2C0:51 scaffold1219 SAMTools SNP 157719 157719 16.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1219 SAMTools SNP 158281 158281 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1219 SAMTools SNP 159587 159587 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.56%2C1.1e-09%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C241:49 scaffold1219 SAMTools SNP 159598 159598 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C75%2C0:99 scaffold1219 SAMTools SNP 159743 159743 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C5.3e-35%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C244:39 scaffold1219 SAMTools SNP 160365 160365 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold1219 SAMTools SNP 161311 161311 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C11%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1219 SAMTools SNP 164057 164057 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1219 SAMTools SNP 165044 165044 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D37%3BFQ%3D-32%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C5%2C0:9 scaffold1219 SAMTools SNP 165221 165221 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D20%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C5%2C0:9 scaffold1219 SAMTools SNP 166744 166744 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C68%2C0%2C52%3BMQ%3D47%3BFQ%3D154%3BPV4%3D9.1e-10%2C1%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1219 SAMTools SNP 167934 167934 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C102%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 167946 167946 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C7%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1219 SAMTools SNP 168016 168016 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1219 SAMTools SNP 168297 168297 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1219 SAMTools SNP 176279 176279 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C249:99 scaffold1219 SAMTools SNP 176280 176280 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C46%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.31%2C0.41%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C244:99 scaffold1219 SAMTools SNP 176282 176282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C1%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1219 SAMTools SNP 176330 176330 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C16%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.088%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 176349 176349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C47%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 176844 176844 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C18%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C198:99 scaffold1219 SAMTools SNP 176858 176858 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C18%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C198:99 scaffold1219 SAMTools SNP 177623 177623 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1219 SAMTools SNP 177799 177799 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1219 SAMTools SNP 177812 177812 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.033%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1219 SAMTools SNP 178983 178983 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.00087%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 179000 179000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1219 SAMTools SNP 179030 179030 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.25%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C211:99 scaffold1219 SAMTools SNP 179270 179270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C22%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1219 SAMTools SNP 179431 179431 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 180209 180209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1219 SAMTools SNP 180292 180292 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C226:66 scaffold1219 SAMTools SNP 180817 180817 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1219 SAMTools SNP 183483 183483 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1219 SAMTools SNP 184136 184136 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.087%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1219 SAMTools SNP 184192 184192 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1219 SAMTools SNP 184218 184218 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1219 SAMTools SNP 185193 185193 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C4%2C17%3BMQ%3D42%3BFQ%3D198%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1219 SAMTools SNP 185309 185309 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C26%3BMQ%3D38%3BFQ%3D191%3BPV4%3D0.11%2C1%2C0.44%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1219 SAMTools SNP 186417 186417 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1219 SAMTools SNP 190078 190078 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1219 SAMTools SNP 190130 190130 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1219 SAMTools SNP 193814 193814 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1219 SAMTools SNP 195050 195050 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1219 SAMTools SNP 195152 195152 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1219 SAMTools SNP 195417 195417 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 195456 195456 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1219 SAMTools SNP 195805 195805 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0049%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1219 SAMTools SNP 197550 197550 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1219 SAMTools SNP 197606 197606 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.03%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1219 SAMTools SNP 197939 197939 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1219 SAMTools SNP 198140 198140 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1219 SAMTools SNP 198148 198148 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.0018%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold1219 SAMTools SNP 198218 198218 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44.4%3BPV4%3D1%2C0.026%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C80:74 scaffold1219 SAMTools SNP 201344 201344 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.11%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C69:72 scaffold1219 SAMTools SNP 201376 201376 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0:39 scaffold1219 SAMTools SNP 201810 201810 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1219 SAMTools SNP 201900 201900 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1219 SAMTools SNP 203759 203759 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1219 SAMTools SNP 203780 203780 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1219 SAMTools SNP 204225 204225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 204315 204315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1219 SAMTools SNP 204321 204321 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1219 SAMTools SNP 210899 210899 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1219 SAMTools SNP 211616 211616 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1219 SAMTools SNP 211846 211846 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1219 SAMTools SNP 211858 211858 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1219 SAMTools SNP 213064 213064 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 214847 214847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 219971 219971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 220519 220519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C33%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 223033 223033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 223931 223931 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1219 SAMTools SNP 231745 231745 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1219 SAMTools SNP 232011 232011 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.29%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1219 SAMTools SNP 235950 235950 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C19%3BMQ%3D49%3BFQ%3D197%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C224:99 scaffold1219 SAMTools SNP 235980 235980 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C14%3BMQ%3D48%3BFQ%3D158%3BPV4%3D0.16%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C185:99 scaffold1219 SAMTools SNP 236025 236025 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C204:63 scaffold1219 SAMTools SNP 236957 236957 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1219 SAMTools SNP 237700 237700 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.093%2C0.0076%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C249:73 scaffold1219 SAMTools SNP 238464 238464 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 241382 241382 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold1219 SAMTools SNP 241388 241388 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold1219 SAMTools SNP 243385 243385 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1219 SAMTools SNP 243387 243387 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1219 SAMTools SNP 244204 244204 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.57%2C1.7e-05%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1219 SAMTools SNP 244255 244255 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.093%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 245491 245491 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1219 SAMTools SNP 245623 245623 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1219 SAMTools SNP 246504 246504 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0167%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C7.2e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1219 SAMTools SNP 246732 246732 129 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C93%2C204%2C0%2C195:27 scaffold1219 SAMTools SNP 246976 246976 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold1219 SAMTools SNP 247009 247009 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold1219 SAMTools SNP 247021 247021 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 247651 247651 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1219 SAMTools SNP 248322 248322 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1219 SAMTools SNP 251431 251431 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.06%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1219 SAMTools SNP 251760 251760 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 252014 252014 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 257874 257874 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1219 SAMTools SNP 261480 261480 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1219 SAMTools SNP 261583 261583 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1219 SAMTools SNP 268000 268000 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1219 SAMTools SNP 268003 268003 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 268471 268471 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C5.8e-21%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1219 SAMTools SNP 268568 268568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C39%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1219 SAMTools SNP 268645 268645 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 269473 269473 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1219 SAMTools SNP 270731 270731 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C42%2C0:69 scaffold1219 SAMTools SNP 270853 270853 6.17 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1219 SAMTools SNP 273351 273351 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1219 SAMTools SNP 273432 273432 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0021%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold1219 SAMTools SNP 275080 275080 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C27%2C0%3BMQ%3D47%3BFQ%3D-81%3BPV4%3D1%2C4.6e-16%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C54%2C0:99 scaffold1219 SAMTools SNP 287834 287834 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1219 SAMTools SNP 288225 288225 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C9.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold1219 SAMTools SNP 288583 288583 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.13%2C0.065%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1219 SAMTools SNP 288612 288612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1219 SAMTools SNP 288627 288627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 288993 288993 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1219 SAMTools SNP 290321 290321 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1219 SAMTools SNP 290396 290396 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1219 SAMTools SNP 293346 293346 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 294799 294799 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.014%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1219 SAMTools SNP 294821 294821 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D0.1%2C0.018%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1219 SAMTools SNP 296249 296249 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1219 SAMTools SNP 297659 297659 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1219 SAMTools SNP 297668 297668 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1219 SAMTools SNP 301967 301967 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1219 SAMTools SNP 302032 302032 142 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.051%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1219 SAMTools SNP 315201 315201 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1219 SAMTools SNP 328885 328885 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C7%2C0%3BMQ%3D45%3BFQ%3D37%3BPV4%3D5.9e-06%2C2.1e-12%2C0.21%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C228:67 scaffold1219 SAMTools SNP 332486 332486 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 332676 332676 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 334350 334350 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1219 SAMTools SNP 335794 335794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C190%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 335821 335821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C0%2C82%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C3.9e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 335875 335875 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C90%2C234%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 336606 336606 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C222%2C19%2C32%3BMQ%3D49%3BFQ%3D143%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1219 SAMTools SNP 337120 337120 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C104%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 337168 337168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C7%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 337441 337441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D47%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1219 SAMTools SNP 337450 337450 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C17%3BMQ%3D47%3BFQ%3D195%3BPV4%3D1%2C0.08%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C232:99 scaffold1219 SAMTools SNP 337468 337468 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C15%3BMQ%3D47%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C235:99 scaffold1219 SAMTools SNP 341549 341549 31.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1219 SAMTools SNP 341666 341666 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1219 SAMTools SNP 342264 342264 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1219 SAMTools SNP 342320 342320 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1219 SAMTools SNP 342754 342754 12.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1219 SAMTools SNP 342762 342762 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1219 SAMTools SNP 343416 343416 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C148:99 scaffold1219 SAMTools SNP 343425 343425 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1219 SAMTools SNP 343452 343452 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.34%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1219 SAMTools SNP 343475 343475 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.079%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1219 SAMTools SNP 350957 350957 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1219 SAMTools SNP 354837 354837 89.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C8%2C0:14 scaffold1219 SAMTools SNP 354873 354873 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1219 SAMTools SNP 358337 358337 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 358365 358365 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 358378 358378 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 361013 361013 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1219 SAMTools SNP 361118 361118 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.078%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 361130 361130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 361399 361399 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 361419 361419 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 362215 362215 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1219 SAMTools SNP 362350 362350 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1219 SAMTools SNP 362382 362382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1219 SAMTools SNP 362842 362842 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1219 SAMTools SNP 363349 363349 106 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C35%2C133%2C0%2C130:21 scaffold1219 SAMTools SNP 363359 363359 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C212:99 scaffold1219 SAMTools SNP 363374 363374 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1219 SAMTools SNP 363864 363864 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1219 SAMTools SNP 365269 365269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C43%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1219 SAMTools SNP 365296 365296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 365320 365320 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1219 SAMTools SNP 365326 365326 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.066%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1219 SAMTools SNP 366081 366081 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1219 SAMTools SNP 366116 366116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.017%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 366310 366310 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1219 SAMTools SNP 366348 366348 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C243:99 scaffold1219 SAMTools SNP 366687 366687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1219 SAMTools SNP 367016 367016 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1219 SAMTools SNP 367046 367046 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 367180 367180 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1219 SAMTools SNP 367205 367205 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1219 SAMTools SNP 367237 367237 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1219 SAMTools SNP 367864 367864 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 368835 368835 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 369558 369558 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 369602 369602 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1219 SAMTools SNP 369614 369614 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1219 SAMTools SNP 369876 369876 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1219 SAMTools SNP 369895 369895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1219 SAMTools SNP 373593 373593 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 373920 373920 32.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1219 SAMTools SNP 375716 375716 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1219 SAMTools SNP 379144 379144 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D822%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D315%2C145%2C206%2C106%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.48%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1219 SAMTools SNP 390335 390335 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1219 SAMTools SNP 396621 396621 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1219 SAMTools SNP 397009 397009 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C30%2C0:57 scaffold1219 SAMTools SNP 397023 397023 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold1219 SAMTools SNP 403151 403151 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 403982 403982 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 403988 403988 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 404027 404027 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1219 SAMTools SNP 404292 404292 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1219 SAMTools SNP 404305 404305 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1219 SAMTools SNP 404343 404343 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1219 SAMTools SNP 406422 406422 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold1219 SAMTools SNP 406452 406452 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold1219 SAMTools SNP 427444 427444 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold1219 SAMTools SNP 427805 427805 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C3%2C9%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.36%2C1.3e-34%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1219 SAMTools SNP 428832 428832 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1219 SAMTools SNP 429713 429713 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C2.6e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C97:49 scaffold1219 SAMTools SNP 429951 429951 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold1219 SAMTools SNP 430215 430215 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C12%2C42%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C0.026%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 431595 431595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C55%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C6.4e-66%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 431892 431892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C46%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C2.9e-39%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 431968 431968 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C0%2C25%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.55%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1219 SAMTools SNP 434844 434844 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 436354 436354 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C51%2C0:99 scaffold1219 SAMTools SNP 436435 436435 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.086%2C3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1219 SAMTools SNP 436518 436518 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1219 SAMTools SNP 437427 437427 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.015%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C102:50 scaffold1219 SAMTools SNP 437491 437491 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.021%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C129:47 scaffold1219 SAMTools SNP 437806 437806 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C255%2C0:99 scaffold1219 SAMTools SNP 439755 439755 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1219 SAMTools SNP 452968 452968 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1219 SAMTools SNP 453461 453461 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1219 SAMTools SNP 459192 459192 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 459193 459193 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 473060 473060 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C74:77 scaffold1219 SAMTools SNP 473090 473090 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1219 SAMTools SNP 476196 476196 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1219 SAMTools SNP 478243 478243 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold1219 SAMTools SNP 478254 478254 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1219 SAMTools SNP 479793 479793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 479810 479810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 480138 480138 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 480530 480530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.14%2C0.1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1219 SAMTools SNP 480623 480623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 481855 481855 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C41%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 481861 481861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C41%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 482429 482429 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 482680 482680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 482688 482688 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.096%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1219 SAMTools SNP 483937 483937 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C147%2C14%2C155%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-05%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 484190 484190 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.04%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 484838 484838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1219 SAMTools SNP 484839 484839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1219 SAMTools SNP 486186 486186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C40%2C20%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 486206 486206 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C62%2C0%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 486348 486348 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1219 SAMTools SNP 488156 488156 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C60%2C0:99 scaffold1219 SAMTools SNP 488608 488608 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 494634 494634 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 516251 516251 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1219 SAMTools SNP 517192 517192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C89%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 523849 523849 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 526958 526958 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1219 SAMTools SNP 526960 526960 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.36%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1219 SAMTools SNP 529153 529153 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1219 SAMTools SNP 529207 529207 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1219 SAMTools SNP 529380 529380 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.055%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1219 SAMTools SNP 529571 529571 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1219 SAMTools SNP 529590 529590 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 529810 529810 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.021%2C4.9e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1219 SAMTools SNP 529865 529865 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1219 SAMTools SNP 530442 530442 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1219 SAMTools SNP 530499 530499 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C239:57 scaffold1219 SAMTools SNP 530504 530504 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C27%2C0:51 scaffold1219 SAMTools SNP 530950 530950 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1219 SAMTools SNP 531477 531477 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C69:72 scaffold1219 SAMTools SNP 533088 533088 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1219 SAMTools SNP 534688 534688 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1219 SAMTools SNP 534941 534941 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 535539 535539 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1219 SAMTools SNP 536025 536025 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 541837 541837 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 541858 541858 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 542136 542136 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 542578 542578 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.26%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1219 SAMTools SNP 543404 543404 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1219 SAMTools SNP 544020 544020 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1219 SAMTools SNP 544080 544080 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1219 SAMTools SNP 544485 544485 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1219 SAMTools SNP 544509 544509 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 545365 545365 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold1219 SAMTools SNP 553300 553300 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold1219 SAMTools SNP 555436 555436 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1219 SAMTools SNP 555868 555868 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.064%2C3.4e-11%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1219 SAMTools SNP 557463 557463 35.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1219 SAMTools SNP 557707 557707 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1219 SAMTools SNP 561728 561728 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.64%2C1.1e-29%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C228:80 scaffold1219 SAMTools SNP 561810 561810 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C10%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C2.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1219 SAMTools SNP 562788 562788 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1219 SAMTools SNP 562816 562816 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.56%2C0.0077%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C248:99 scaffold1219 SAMTools SNP 563503 563503 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C251:99 scaffold1219 SAMTools SNP 567195 567195 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1219 SAMTools SNP 568924 568924 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1219 SAMTools SNP 569296 569296 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1219 SAMTools SNP 569302 569302 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1219 SAMTools SNP 570412 570412 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C10%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.027%2C1%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1219 SAMTools SNP 571267 571267 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1219 SAMTools SNP 571369 571369 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C217:99 scaffold1219 SAMTools SNP 571372 571372 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1219 SAMTools SNP 571715 571715 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C34:37 scaffold1219 SAMTools SNP 578202 578202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4401%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1101%2C2754%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 578493 578493 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2124%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D384%2C686%2C384%2C473%3BMQ%3D23%3BFQ%3D163%3BPV4%3D8.3e-05%2C1.3e-06%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C198:99 scaffold1219 SAMTools SNP 584762 584762 43.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1219 SAMTools SNP 584834 584834 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 585411 585411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1219 SAMTools SNP 585435 585435 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1219 SAMTools SNP 585693 585693 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.63%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1219 SAMTools SNP 585726 585726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C10%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0045%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1219 SAMTools SNP 585775 585775 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C0.0035%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 585937 585937 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1219 SAMTools SNP 586532 586532 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 588795 588795 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1219 SAMTools SNP 588929 588929 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1219 SAMTools SNP 588951 588951 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1219 SAMTools SNP 589437 589437 42.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1219 SAMTools SNP 589615 589615 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1219 SAMTools SNP 589642 589642 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold1219 SAMTools SNP 590198 590198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1219 SAMTools SNP 591113 591113 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1219 SAMTools SNP 591117 591117 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 592006 592006 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 592905 592905 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C0.036%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1219 SAMTools SNP 594335 594335 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.21%2C0.021%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C216:99 scaffold1219 SAMTools SNP 594350 594350 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.034%2C6.9e-06%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1219 SAMTools SNP 594356 594356 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1219 SAMTools SNP 595823 595823 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1219 SAMTools SNP 595832 595832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C5%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.34%2C0.067%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1219 SAMTools SNP 602420 602420 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1219 SAMTools SNP 602462 602462 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1219 SAMTools SNP 602944 602944 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1219 SAMTools SNP 602953 602953 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1219 SAMTools SNP 603025 603025 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1219 SAMTools SNP 603138 603138 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1219 SAMTools SNP 604124 604124 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1219 SAMTools SNP 604125 604125 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1219 SAMTools SNP 604604 604604 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1219 SAMTools SNP 604706 604706 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.061%2C0.048%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1219 SAMTools SNP 612161 612161 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1219 SAMTools SNP 612168 612168 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1219 SAMTools SNP 612321 612321 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 616454 616454 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 619068 619068 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.27%2C0.0024%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1219 SAMTools SNP 633122 633122 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C9%2C21%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.45%2C7.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1219 SAMTools SNP 633179 633179 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C13%2C12%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C1.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1219 SAMTools SNP 633667 633667 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C37%2C31%2C26%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.48%2C5.4e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1219 SAMTools SNP 634592 634592 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C67%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C205%2C0:99 scaffold1219 SAMTools SNP 652815 652815 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1219 SAMTools SNP 659579 659579 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 660039 660039 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold1219 SAMTools SNP 665694 665694 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1219 SAMTools SNP 665714 665714 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 665715 665715 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C8.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C135:99 scaffold1219 SAMTools SNP 667109 667109 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4156%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C1355%2C393%2C2241%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 681170 681170 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1219 SAMTools SNP 681175 681175 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 690432 690432 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1219 SAMTools SNP 690480 690480 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C7%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.026%2C1.9e-29%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 690780 690780 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C45%3BMQ%3D47%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C138%2C0:99 scaffold1219 SAMTools SNP 692396 692396 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1219 SAMTools SNP 698834 698834 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0041%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1219 SAMTools SNP 698892 698892 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold1219 SAMTools SNP 698962 698962 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C63%2C0:99 scaffold1219 SAMTools SNP 710141 710141 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1219 SAMTools SNP 710168 710168 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1219 SAMTools SNP 710195 710195 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1219 SAMTools SNP 710376 710376 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C32%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0012%2C5.9e-07%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold1219 SAMTools SNP 710450 710450 65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C9%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C3.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C235:98 scaffold1219 SAMTools SNP 710691 710691 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1219 SAMTools SNP 714632 714632 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C39%2C0:75 scaffold1219 SAMTools SNP 714682 714682 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1219 SAMTools SNP 715156 715156 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C35%2C18%3BMQ%3D50%3BFQ%3D-150%3BPV4%3D0.35%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1219 SAMTools SNP 715252 715252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 723155 723155 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C7.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C151:99 scaffold1219 SAMTools SNP 723681 723681 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1219 SAMTools SNP 723717 723717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1219 SAMTools SNP 724594 724594 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1219 SAMTools SNP 730330 730330 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 730333 730333 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold1219 SAMTools SNP 778739 778739 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1219 SAMTools SNP 804085 804085 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C48%2C0:93 scaffold1219 SAMTools SNP 804090 804090 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C27%2C0:51 scaffold1219 SAMTools SNP 804224 804224 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C5%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1219 SAMTools SNP 804243 804243 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C9%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1219 SAMTools SNP 804749 804749 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 804887 804887 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 806324 806324 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 806333 806333 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 807025 807025 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1219 SAMTools SNP 807046 807046 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1219 SAMTools SNP 809259 809259 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.021%2C1.6e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1219 SAMTools SNP 809274 809274 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1219 SAMTools SNP 809289 809289 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1219 SAMTools SNP 809352 809352 197 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C30%2C9%2C218%2C0%2C215:39 scaffold1219 SAMTools SNP 809843 809843 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold1219 SAMTools SNP 809881 809881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1219 SAMTools SNP 810306 810306 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.53%2C0.0018%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1219 SAMTools SNP 810418 810418 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1219 SAMTools SNP 810890 810890 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1219 SAMTools SNP 810965 810965 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C4e-08%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1219 SAMTools SNP 811644 811644 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1219 SAMTools SNP 811680 811680 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1219 SAMTools SNP 812503 812503 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1219 SAMTools SNP 812524 812524 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.14%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1219 SAMTools SNP 812700 812700 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C242:63 scaffold1219 SAMTools SNP 812706 812706 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1219 SAMTools SNP 812721 812721 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C0.49%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1219 SAMTools SNP 812787 812787 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D21.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C49:51 scaffold1219 SAMTools SNP 813068 813068 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0047%2C0.18%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold1219 SAMTools SNP 813090 813090 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C11%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1219 SAMTools SNP 813095 813095 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C14%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1219 SAMTools SNP 813158 813158 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 813419 813419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 813440 813440 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C0.071%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 813482 813482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.52%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1219 SAMTools SNP 813505 813505 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1219 SAMTools SNP 815607 815607 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.005%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C167:99 scaffold1219 SAMTools SNP 816027 816027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1219 SAMTools SNP 816087 816087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1219 SAMTools SNP 820230 820230 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1219 SAMTools SNP 820516 820516 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1219 SAMTools SNP 821685 821685 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold1219 SAMTools SNP 823649 823649 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C4%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.46%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 823948 823948 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.068%2C3.2e-06%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1219 SAMTools SNP 824822 824822 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 824885 824885 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C61%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 825453 825453 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C1%2C61%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.00015%2C3.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1219 SAMTools SNP 829166 829166 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1219 SAMTools SNP 829175 829175 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1219 SAMTools SNP 830208 830208 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 830636 830636 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1219 SAMTools SNP 830659 830659 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1219 SAMTools SNP 830686 830686 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C169:99 scaffold1219 SAMTools SNP 830967 830967 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1219 SAMTools SNP 831362 831362 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1219 SAMTools SNP 831778 831778 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1219 SAMTools SNP 833125 833125 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1219 SAMTools SNP 833179 833179 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 833618 833618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 843272 843272 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 843752 843752 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C37%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 844311 844311 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.00046%2C1%2C1%2C6.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1219 SAMTools SNP 844359 844359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1219 SAMTools SNP 844365 844365 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1219 SAMTools SNP 845377 845377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.32%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1219 SAMTools SNP 845413 845413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1219 SAMTools SNP 846003 846003 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0022%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1219 SAMTools SNP 848838 848838 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1219 SAMTools SNP 848952 848952 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1219 SAMTools SNP 848976 848976 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1219 SAMTools SNP 850286 850286 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1219 SAMTools SNP 850332 850332 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1219 SAMTools SNP 850352 850352 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold1219 SAMTools SNP 851692 851692 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C15%2C0:27 scaffold1219 SAMTools SNP 855037 855037 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 855074 855074 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1219 SAMTools SNP 855607 855607 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1219 SAMTools SNP 855626 855626 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1219 SAMTools SNP 855636 855636 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 857714 857714 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1219 SAMTools SNP 860514 860514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 861869 861869 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1219 SAMTools SNP 861899 861899 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 861967 861967 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1219 SAMTools SNP 861974 861974 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1219 SAMTools SNP 863968 863968 44.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1219 SAMTools SNP 866239 866239 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1219 SAMTools SNP 866241 866241 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1219 SAMTools SNP 866536 866536 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1219 SAMTools SNP 873522 873522 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1219 SAMTools SNP 875572 875572 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.034%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1219 SAMTools SNP 877041 877041 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C231:99 scaffold1219 SAMTools SNP 877066 877066 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1219 SAMTools SNP 877077 877077 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C231:82 scaffold1219 SAMTools SNP 877275 877275 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1219 SAMTools SNP 877782 877782 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 877934 877934 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1219 SAMTools SNP 878656 878656 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C15%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 880530 880530 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 880640 880640 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1219 SAMTools SNP 880673 880673 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1219 SAMTools SNP 881320 881320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.093%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1219 SAMTools SNP 881338 881338 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.015%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 882528 882528 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1219 SAMTools SNP 882597 882597 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C197:99 scaffold1219 SAMTools SNP 882615 882615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1219 SAMTools SNP 882753 882753 202 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1219 SAMTools SNP 883522 883522 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1219 SAMTools SNP 884977 884977 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1219 SAMTools SNP 884987 884987 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1219 SAMTools SNP 885001 885001 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 891458 891458 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold1219 SAMTools SNP 891542 891542 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 892659 892659 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C104:43 scaffold1219 SAMTools SNP 894039 894039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1219 SAMTools SNP 894162 894162 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1219 SAMTools SNP 894456 894456 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold1219 SAMTools SNP 894573 894573 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 894864 894864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1219 SAMTools SNP 894898 894898 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.22%2C0.00032%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1219 SAMTools SNP 895304 895304 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1219 SAMTools SNP 895771 895771 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1219 SAMTools SNP 895780 895780 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1219 SAMTools SNP 896014 896014 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1219 SAMTools SNP 896025 896025 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.089%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C166:39 scaffold1219 SAMTools SNP 896052 896052 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold1219 SAMTools SNP 896450 896450 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C8%2C0%3BMQ%3D47%3BFQ%3D64%3BPV4%3D0.56%2C1%2C1.7e-05%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1219 SAMTools SNP 896519 896519 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C11%2C21%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.57%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 897810 897810 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C5%2C14%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.75%2C0.0035%2C0.035%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 898295 898295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1219 SAMTools SNP 898650 898650 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1219 SAMTools SNP 899650 899650 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1219 SAMTools SNP 901062 901062 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1219 SAMTools SNP 903604 903604 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 903616 903616 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 904810 904810 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1219 SAMTools SNP 904816 904816 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C139%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1219 SAMTools SNP 904867 904867 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1219 SAMTools SNP 910119 910119 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C154:99 scaffold1219 SAMTools SNP 910152 910152 53.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold1219 SAMTools SNP 910164 910164 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C21:24 scaffold1219 SAMTools SNP 910191 910191 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold1219 SAMTools SNP 910588 910588 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1219 SAMTools SNP 910645 910645 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1219 SAMTools SNP 910795 910795 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1219 SAMTools SNP 911123 911123 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 911207 911207 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1219 SAMTools SNP 911536 911536 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1219 SAMTools SNP 911563 911563 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1219 SAMTools SNP 912026 912026 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1219 SAMTools SNP 912066 912066 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1219 SAMTools SNP 913018 913018 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C48%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1219 SAMTools SNP 913631 913631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1219 SAMTools SNP 914059 914059 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1219 SAMTools SNP 914111 914111 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold1219 SAMTools SNP 914127 914127 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1219 SAMTools SNP 914179 914179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1219 SAMTools SNP 914441 914441 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1219 SAMTools SNP 914731 914731 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold1219 SAMTools SNP 914803 914803 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold122 SAMTools SNP 3093 3093 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 3461 3461 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C30%2C0:57 scaffold122 SAMTools SNP 4390 4390 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold122 SAMTools SNP 4426 4426 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold122 SAMTools SNP 4984 4984 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold122 SAMTools SNP 5072 5072 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 5651 5651 157 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C36%2C18%2C180%2C0%2C177:33 scaffold122 SAMTools SNP 7212 7212 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold122 SAMTools SNP 7776 7776 197 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold122 SAMTools SNP 7790 7790 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.51%2C0.49%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold122 SAMTools SNP 11045 11045 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold122 SAMTools SNP 11066 11066 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C185:99 scaffold122 SAMTools SNP 11556 11556 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C0.46%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold122 SAMTools SNP 12068 12068 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C0%3BMQ%3D48%3BFQ%3D174%3BPV4%3D0.09%2C0.23%2C0.086%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold122 SAMTools SNP 12316 12316 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C12%3BMQ%3D43%3BFQ%3D185%3BPV4%3D0.19%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C232:99 scaffold122 SAMTools SNP 12349 12349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C15%2C7%3BMQ%3D39%3BFQ%3D156%3BPV4%3D0.0011%2C0.44%2C0.2%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold122 SAMTools SNP 12548 12548 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C9%3BMQ%3D37%3BFQ%3D87%3BPV4%3D0.00093%2C1%2C0.49%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold122 SAMTools SNP 12650 12650 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D29%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold122 SAMTools SNP 13039 13039 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D32%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C45%2C0:87 scaffold122 SAMTools SNP 13253 13253 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0054%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold122 SAMTools SNP 14653 14653 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold122 SAMTools SNP 14682 14682 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold122 SAMTools SNP 16357 16357 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold122 SAMTools SNP 16444 16444 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold122 SAMTools SNP 17888 17888 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold122 SAMTools SNP 20170 20170 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C76%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C255%2C0:66 scaffold122 SAMTools SNP 20245 20245 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C40%3BMQ%3D3%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C202%2C0:36 scaffold122 SAMTools SNP 27790 27790 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold122 SAMTools SNP 28852 28852 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold122 SAMTools SNP 29048 29048 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold122 SAMTools SNP 29609 29609 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold122 SAMTools SNP 31107 31107 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 31709 31709 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 31715 31715 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 31982 31982 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold122 SAMTools SNP 32434 32434 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold122 SAMTools SNP 32440 32440 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold122 SAMTools SNP 32636 32636 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold122 SAMTools SNP 32661 32661 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold122 SAMTools SNP 52452 52452 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold122 SAMTools SNP 52464 52464 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold122 SAMTools SNP 53904 53904 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold122 SAMTools SNP 55858 55858 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 55868 55868 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 62863 62863 65.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C40%2C22%2C89%2C0%2C86:33 scaffold122 SAMTools SNP 63435 63435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold122 SAMTools SNP 64677 64677 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D758%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C380%2C378%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold122 SAMTools SNP 64705 64705 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C251%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold122 SAMTools SNP 65124 65124 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold122 SAMTools SNP 65592 65592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold122 SAMTools SNP 65832 65832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C410%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold122 SAMTools SNP 67954 67954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D631%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C591%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold122 SAMTools SNP 77348 77348 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C42:45 scaffold122 SAMTools SNP 77451 77451 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold122 SAMTools SNP 88097 88097 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold122 SAMTools SNP 90913 90913 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 91378 91378 9.51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D2%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C120%2C0:60 scaffold122 SAMTools SNP 93472 93472 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 95572 95572 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold122 SAMTools SNP 100743 100743 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.68%2C2.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold122 SAMTools SNP 103097 103097 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold122 SAMTools SNP 103098 103098 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold122 SAMTools SNP 103116 103116 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold122 SAMTools SNP 103145 103145 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C215:99 scaffold122 SAMTools SNP 104917 104917 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.61%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold122 SAMTools SNP 105636 105636 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold122 SAMTools SNP 105789 105789 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 106311 106311 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold122 SAMTools SNP 106319 106319 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold122 SAMTools SNP 106346 106346 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold122 SAMTools SNP 107058 107058 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold122 SAMTools SNP 107061 107061 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.061%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C98:99 scaffold122 SAMTools SNP 108154 108154 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold122 SAMTools SNP 108214 108214 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold122 SAMTools SNP 108861 108861 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold122 SAMTools SNP 109977 109977 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold122 SAMTools SNP 110316 110316 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold122 SAMTools SNP 110325 110325 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.32%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold122 SAMTools SNP 111443 111443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold122 SAMTools SNP 116879 116879 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold122 SAMTools SNP 119249 119249 138 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C21%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C238%2C0%2C170%2C218%2C167:99 scaffold122 SAMTools SNP 120774 120774 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold122 SAMTools SNP 124951 124951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold122 SAMTools SNP 124969 124969 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C233:99 scaffold122 SAMTools SNP 125400 125400 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold122 SAMTools SNP 125437 125437 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 132126 132126 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold122 SAMTools SNP 132174 132174 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold122 SAMTools SNP 133216 133216 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold122 SAMTools SNP 137061 137061 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.093%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold122 SAMTools SNP 137107 137107 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.12%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold122 SAMTools SNP 138660 138660 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 138739 138739 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.022%2C1e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold122 SAMTools SNP 139967 139967 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold122 SAMTools SNP 140052 140052 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C72%2C0:99 scaffold122 SAMTools SNP 158233 158233 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold122 SAMTools SNP 158556 158556 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.029%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold122 SAMTools SNP 162516 162516 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0077%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C136:37 scaffold122 SAMTools SNP 162524 162524 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.011%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C135:37 scaffold122 SAMTools SNP 162908 162908 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C48%2C0:93 scaffold122 SAMTools SNP 174429 174429 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.00027%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold122 SAMTools SNP 175283 175283 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold122 SAMTools SNP 185716 185716 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold122 SAMTools SNP 191605 191605 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold122 SAMTools SNP 200726 200726 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold122 SAMTools SNP 200729 200729 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold122 SAMTools SNP 201090 201090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 201315 201315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 201341 201341 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C214:51 scaffold122 SAMTools SNP 201342 201342 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold122 SAMTools SNP 201369 201369 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.008%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold122 SAMTools SNP 202620 202620 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold122 SAMTools SNP 202627 202627 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold122 SAMTools SNP 202641 202641 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold122 SAMTools SNP 202644 202644 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold122 SAMTools SNP 203819 203819 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C3%2C26%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.24%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold122 SAMTools SNP 205559 205559 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold122 SAMTools SNP 205597 205597 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold122 SAMTools SNP 207383 207383 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C2%2C29%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2.1e-59%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold122 SAMTools SNP 207632 207632 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C5%2C46%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2e-50%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 207759 207759 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C64%2C2%2C66%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.057%2C6.9e-110%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold122 SAMTools SNP 209070 209070 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.14%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 209567 209567 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C10%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 209585 209585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.095%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold122 SAMTools SNP 209633 209633 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold122 SAMTools SNP 209666 209666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold122 SAMTools SNP 210644 210644 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C234:99 scaffold122 SAMTools SNP 210761 210761 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold122 SAMTools SNP 210791 210791 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold122 SAMTools SNP 211372 211372 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold122 SAMTools SNP 212032 212032 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.61%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold122 SAMTools SNP 212110 212110 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C75%2C0:99 scaffold122 SAMTools SNP 212349 212349 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00025%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C164:71 scaffold122 SAMTools SNP 213387 213387 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C0%2C38%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0086%2C2.6e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold122 SAMTools SNP 217271 217271 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold122 SAMTools SNP 217699 217699 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C0.12%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C204:47 scaffold122 SAMTools SNP 217718 217718 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold122 SAMTools SNP 217757 217757 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C176:82 scaffold122 SAMTools SNP 218985 218985 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold122 SAMTools SNP 218990 218990 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold122 SAMTools SNP 219374 219374 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold122 SAMTools SNP 221440 221440 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold122 SAMTools SNP 223926 223926 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold122 SAMTools SNP 229182 229182 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold122 SAMTools SNP 229242 229242 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold122 SAMTools SNP 230299 230299 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold122 SAMTools SNP 233279 233279 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C75%2C0:99 scaffold122 SAMTools SNP 233804 233804 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C189:99 scaffold122 SAMTools SNP 234590 234590 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.24%2C0.0064%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold122 SAMTools SNP 235403 235403 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1220 SAMTools SNP 16199 16199 84 . . REF=A;ALT=T,G,C;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C42%2C0%2C111%2C15%2C105%2C116%2C29%2C105%2C113:81 scaffold1220 SAMTools SNP 16683 16683 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C60%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C226%2C0:99 scaffold1220 SAMTools SNP 17339 17339 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1220 SAMTools SNP 19984 19984 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1220 SAMTools SNP 20050 20050 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C24%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1.7e-22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C192:99 scaffold1220 SAMTools SNP 31078 31078 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1220 SAMTools SNP 80259 80259 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 80289 80289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 82730 82730 4.75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1220 SAMTools SNP 85262 85262 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C57%2C0:92 scaffold1220 SAMTools SNP 85354 85354 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 85997 85997 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1220 SAMTools SNP 86009 86009 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C25%2C4%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C151:99 scaffold1220 SAMTools SNP 90356 90356 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1220 SAMTools SNP 90362 90362 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1220 SAMTools SNP 92763 92763 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.061%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1220 SAMTools SNP 93893 93893 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 94664 94664 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1220 SAMTools SNP 94882 94882 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.28%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1220 SAMTools SNP 94921 94921 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1220 SAMTools SNP 95419 95419 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1220 SAMTools SNP 95437 95437 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1220 SAMTools SNP 99777 99777 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1220 SAMTools SNP 100501 100501 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1220 SAMTools SNP 101257 101257 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.032%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold1220 SAMTools SNP 101258 101258 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold1220 SAMTools SNP 101315 101315 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C212:99 scaffold1220 SAMTools SNP 101743 101743 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.026%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C193:99 scaffold1220 SAMTools SNP 102252 102252 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 102273 102273 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1220 SAMTools SNP 104366 104366 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1220 SAMTools SNP 104372 104372 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.019%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1220 SAMTools SNP 104375 104375 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1220 SAMTools SNP 104465 104465 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C54:57 scaffold1220 SAMTools SNP 112515 112515 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1220 SAMTools SNP 112879 112879 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0086%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1220 SAMTools SNP 112882 112882 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.065%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1220 SAMTools SNP 112894 112894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1220 SAMTools SNP 113037 113037 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1220 SAMTools SNP 113079 113079 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1220 SAMTools SNP 113084 113084 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1220 SAMTools SNP 113085 113085 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1220 SAMTools SNP 113089 113089 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1220 SAMTools SNP 113328 113328 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1220 SAMTools SNP 113350 113350 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1220 SAMTools SNP 113379 113379 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.45%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1220 SAMTools SNP 114131 114131 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.0064%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1220 SAMTools SNP 114557 114557 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1220 SAMTools SNP 114579 114579 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1220 SAMTools SNP 114624 114624 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1220 SAMTools SNP 114788 114788 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1220 SAMTools SNP 114863 114863 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1220 SAMTools SNP 115326 115326 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1220 SAMTools SNP 115488 115488 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C93%2C0:99 scaffold1220 SAMTools SNP 116953 116953 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1220 SAMTools SNP 117371 117371 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1220 SAMTools SNP 141650 141650 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1220 SAMTools SNP 141829 141829 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold1220 SAMTools SNP 145908 145908 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C199:36 scaffold1220 SAMTools SNP 146275 146275 201 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold1221 SAMTools SNP 1471 1471 4.12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C21%3BMQ%3D3%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C114%2C0:39 scaffold1221 SAMTools SNP 1689 1689 9.51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D3%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C72%2C0:60 scaffold1221 SAMTools SNP 4287 4287 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1221 SAMTools SNP 6217 6217 25.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1221 SAMTools SNP 6424 6424 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1221 SAMTools SNP 6584 6584 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1221 SAMTools SNP 6830 6830 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.55%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C245:55 scaffold1221 SAMTools SNP 6874 6874 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.24%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C230:99 scaffold1221 SAMTools SNP 9981 9981 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 10795 10795 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1221 SAMTools SNP 11546 11546 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1221 SAMTools SNP 11802 11802 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold1221 SAMTools SNP 12725 12725 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1221 SAMTools SNP 13098 13098 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 13107 13107 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 13108 13108 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1221 SAMTools SNP 13375 13375 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 13378 13378 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 13865 13865 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 13937 13937 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 13947 13947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 14721 14721 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 15138 15138 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 21288 21288 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 21629 21629 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 21656 21656 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 21980 21980 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 22232 22232 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 22301 22301 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1221 SAMTools SNP 22328 22328 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1221 SAMTools SNP 22820 22820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 22964 22964 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1221 SAMTools SNP 23692 23692 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 23719 23719 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1221 SAMTools SNP 24918 24918 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 24924 24924 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 25270 25270 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 27542 27542 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C75%2C0:99 scaffold1221 SAMTools SNP 27596 27596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1221 SAMTools SNP 27617 27617 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1221 SAMTools SNP 27970 27970 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 28015 28015 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0091%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold1221 SAMTools SNP 28220 28220 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 28233 28233 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 29201 29201 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 29205 29205 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1221 SAMTools SNP 29591 29591 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold1221 SAMTools SNP 29609 29609 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1221 SAMTools SNP 33844 33844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 74384 74384 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1221 SAMTools SNP 74462 74462 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 85131 85131 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 85157 85157 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold1221 SAMTools SNP 93513 93513 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 95374 95374 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1221 SAMTools SNP 95679 95679 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 95808 95808 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D65.7%3BPV4%3D0.015%2C0.004%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C105:96 scaffold1221 SAMTools SNP 96000 96000 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1.1e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 98207 98207 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C7%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C91:99 scaffold1221 SAMTools SNP 98222 98222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1221 SAMTools SNP 98249 98249 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C0.21%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C150:99 scaffold1221 SAMTools SNP 98263 98263 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C32%2C0%2C14%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0031%2C1.1e-09%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1221 SAMTools SNP 99507 99507 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C68%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 100942 100942 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C65%2C66%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 101016 101016 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C12%2C125%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1221 SAMTools SNP 101333 101333 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C8%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.33%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 108294 108294 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 108549 108549 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1221 SAMTools SNP 108598 108598 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1221 SAMTools SNP 108912 108912 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C231:99 scaffold1221 SAMTools SNP 109291 109291 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.59%2C0.12%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1221 SAMTools SNP 109315 109315 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 109323 109323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 109620 109620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1221 SAMTools SNP 109935 109935 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C157:74 scaffold1221 SAMTools SNP 109953 109953 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 110539 110539 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 111041 111041 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C134:77 scaffold1221 SAMTools SNP 111056 111056 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1221 SAMTools SNP 111074 111074 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1221 SAMTools SNP 111077 111077 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C135:77 scaffold1221 SAMTools SNP 112594 112594 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.38%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C232:99 scaffold1221 SAMTools SNP 112832 112832 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1221 SAMTools SNP 113068 113068 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1221 SAMTools SNP 113095 113095 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1221 SAMTools SNP 113375 113375 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1221 SAMTools SNP 119008 119008 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 119342 119342 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 119369 119369 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 120023 120023 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1221 SAMTools SNP 120070 120070 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1221 SAMTools SNP 120569 120569 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1221 SAMTools SNP 120588 120588 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 120996 120996 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 121765 121765 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 121778 121778 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 121805 121805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1221 SAMTools SNP 122186 122186 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.014%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C80:83 scaffold1221 SAMTools SNP 122807 122807 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1221 SAMTools SNP 122810 122810 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1221 SAMTools SNP 122814 122814 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 122854 122854 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1221 SAMTools SNP 122860 122860 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.16%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1221 SAMTools SNP 123402 123402 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1221 SAMTools SNP 123674 123674 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1221 SAMTools SNP 123710 123710 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 124245 124245 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 124898 124898 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1221 SAMTools SNP 125381 125381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1221 SAMTools SNP 125928 125928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1221 SAMTools SNP 125962 125962 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1221 SAMTools SNP 126178 126178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1221 SAMTools SNP 126195 126195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1221 SAMTools SNP 126258 126258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1221 SAMTools SNP 126285 126285 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1221 SAMTools SNP 126636 126636 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1221 SAMTools SNP 126643 126643 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1221 SAMTools SNP 126676 126676 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1221 SAMTools SNP 126700 126700 52.8 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C86%2C80%2C86%2C0%2C80:10 scaffold1221 SAMTools SNP 126882 126882 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1221 SAMTools SNP 126900 126900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1221 SAMTools SNP 126927 126927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1221 SAMTools SNP 127338 127338 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 127346 127346 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1221 SAMTools SNP 130222 130222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1221 SAMTools SNP 130256 130256 91.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C15%2C0:27 scaffold1221 SAMTools SNP 132631 132631 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 132652 132652 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold1221 SAMTools SNP 133444 133444 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 133474 133474 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 134134 134134 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 134165 134165 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 134182 134182 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.041%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C254:99 scaffold1221 SAMTools SNP 134781 134781 97.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold1221 SAMTools SNP 135771 135771 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.051%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1221 SAMTools SNP 135776 135776 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.17%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1221 SAMTools SNP 135816 135816 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.087%2C0.11%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1221 SAMTools SNP 136974 136974 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C22:25 scaffold1221 SAMTools SNP 140406 140406 9.97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1221 SAMTools SNP 140872 140872 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.012%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1221 SAMTools SNP 141100 141100 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C15%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.23%2C4.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1221 SAMTools SNP 141123 141123 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C2.7e-28%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1221 SAMTools SNP 141192 141192 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C42%2C0:81 scaffold1221 SAMTools SNP 141263 141263 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold1221 SAMTools SNP 141399 141399 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1221 SAMTools SNP 142892 142892 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1221 SAMTools SNP 142953 142953 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 143482 143482 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1221 SAMTools SNP 143526 143526 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 143574 143574 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 144033 144033 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.41%2C3.8e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1221 SAMTools SNP 144090 144090 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C11%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C169%2C0:99 scaffold1221 SAMTools SNP 144117 144117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1221 SAMTools SNP 145316 145316 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 145608 145608 54.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1221 SAMTools SNP 145650 145650 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1221 SAMTools SNP 145653 145653 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C36:39 scaffold1221 SAMTools SNP 156195 156195 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 157485 157485 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.33%2C0.14%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C138:50 scaffold1221 SAMTools SNP 164263 164263 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 164309 164309 74.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1221 SAMTools SNP 170119 170119 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 170146 170146 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 173978 173978 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C0.4%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1221 SAMTools SNP 174303 174303 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1221 SAMTools SNP 175403 175403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C19%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold1221 SAMTools SNP 175445 175445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 176650 176650 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.3%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1221 SAMTools SNP 176704 176704 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1221 SAMTools SNP 176956 176956 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C54%2C0:99 scaffold1221 SAMTools SNP 177535 177535 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1221 SAMTools SNP 233075 233075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C65%2C47%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.5e-118%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1221 SAMTools SNP 233170 233170 46.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1221 SAMTools SNP 233197 233197 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1221 SAMTools SNP 233494 233494 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C108%2C0:99 scaffold1221 SAMTools SNP 244200 244200 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 255845 255845 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1221 SAMTools SNP 255897 255897 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.067%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C49:52 scaffold1221 SAMTools SNP 259857 259857 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold1221 SAMTools SNP 259969 259969 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C4e-18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C214:99 scaffold1221 SAMTools SNP 260245 260245 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold1221 SAMTools SNP 260299 260299 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 260812 260812 55.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1221 SAMTools SNP 260884 260884 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1221 SAMTools SNP 261334 261334 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1221 SAMTools SNP 261366 261366 176 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C56%2C29%2C199%2C0%2C193:51 scaffold1221 SAMTools SNP 261902 261902 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 262083 262083 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1221 SAMTools SNP 262098 262098 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1221 SAMTools SNP 262170 262170 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1221 SAMTools SNP 262534 262534 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 263225 263225 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 263302 263302 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1221 SAMTools SNP 263706 263706 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1221 SAMTools SNP 263716 263716 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1221 SAMTools SNP 263779 263779 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold1221 SAMTools SNP 264418 264418 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1221 SAMTools SNP 264434 264434 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1221 SAMTools SNP 264515 264515 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1221 SAMTools SNP 265034 265034 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 265399 265399 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold1221 SAMTools SNP 265468 265468 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 265472 265472 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 267660 267660 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1221 SAMTools SNP 268648 268648 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.17%2C1.3e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C64:50 scaffold1221 SAMTools SNP 300352 300352 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 307430 307430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 307431 307431 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 309158 309158 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1221 SAMTools SNP 309172 309172 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1221 SAMTools SNP 309464 309464 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00012%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C210:54 scaffold1221 SAMTools SNP 309524 309524 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1221 SAMTools SNP 315106 315106 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 320818 320818 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 320857 320857 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D59.9%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C91:90 scaffold1221 SAMTools SNP 321230 321230 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold1221 SAMTools SNP 321260 321260 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 321294 321294 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.011%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1221 SAMTools SNP 321317 321317 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1221 SAMTools SNP 322971 322971 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C15:18 scaffold1221 SAMTools SNP 323050 323050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1221 SAMTools SNP 323348 323348 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 323532 323532 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 323560 323560 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 352685 352685 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 353233 353233 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C110:99 scaffold1221 SAMTools SNP 353257 353257 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1221 SAMTools SNP 353452 353452 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1221 SAMTools SNP 354632 354632 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.048%2C5.6e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1221 SAMTools SNP 354680 354680 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.47%2C0.091%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C166:47 scaffold1221 SAMTools SNP 354911 354911 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1221 SAMTools SNP 354923 354923 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1221 SAMTools SNP 354941 354941 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold1221 SAMTools SNP 357713 357713 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1221 SAMTools SNP 357766 357766 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold1221 SAMTools SNP 358063 358063 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.048%2C2.3e-08%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C160:42 scaffold1221 SAMTools SNP 358373 358373 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C27%2C0:51 scaffold1221 SAMTools SNP 358436 358436 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1221 SAMTools SNP 358487 358487 62.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold1221 SAMTools SNP 358514 358514 32.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1221 SAMTools SNP 359231 359231 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1221 SAMTools SNP 359935 359935 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1221 SAMTools SNP 359973 359973 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1221 SAMTools SNP 359994 359994 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1221 SAMTools SNP 360276 360276 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1221 SAMTools SNP 360558 360558 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1221 SAMTools SNP 360717 360717 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 360949 360949 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 362389 362389 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1221 SAMTools SNP 362431 362431 29.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1221 SAMTools SNP 363449 363449 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 363488 363488 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1221 SAMTools SNP 363584 363584 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1221 SAMTools SNP 363918 363918 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1221 SAMTools SNP 364038 364038 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.063%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1221 SAMTools SNP 365324 365324 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 365851 365851 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 365869 365869 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 366401 366401 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 366519 366519 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1221 SAMTools SNP 366657 366657 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1221 SAMTools SNP 367215 367215 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 367586 367586 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 367611 367611 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1221 SAMTools SNP 367961 367961 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 368872 368872 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1221 SAMTools SNP 369311 369311 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C24%2C0:45 scaffold1221 SAMTools SNP 369788 369788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1221 SAMTools SNP 369839 369839 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 369854 369854 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 369866 369866 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 371211 371211 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 372163 372163 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 372682 372682 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 373434 373434 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.43%2C1.2e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C121:50 scaffold1221 SAMTools SNP 373466 373466 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1221 SAMTools SNP 373693 373693 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1221 SAMTools SNP 374015 374015 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 374176 374176 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 374656 374656 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 375001 375001 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 375487 375487 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 375787 375787 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1221 SAMTools SNP 376340 376340 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1221 SAMTools SNP 376454 376454 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 376740 376740 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 376917 376917 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 377780 377780 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 378219 378219 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1221 SAMTools SNP 378643 378643 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1221 SAMTools SNP 378718 378718 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 378914 378914 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 378937 378937 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 379225 379225 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 379266 379266 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.4%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1221 SAMTools SNP 379462 379462 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C79:78 scaffold1221 SAMTools SNP 379805 379805 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 379817 379817 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 382761 382761 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1221 SAMTools SNP 382764 382764 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1221 SAMTools SNP 383451 383451 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 384343 384343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 384546 384546 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 384710 384710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 384860 384860 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 384882 384882 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 385293 385293 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 385335 385335 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C131:36 scaffold1221 SAMTools SNP 385346 385346 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1221 SAMTools SNP 386009 386009 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1221 SAMTools SNP 387472 387472 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 387482 387482 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 388389 388389 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 388469 388469 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1221 SAMTools SNP 389245 389245 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 389737 389737 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 395128 395128 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 395370 395370 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1221 SAMTools SNP 395397 395397 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1221 SAMTools SNP 397871 397871 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1221 SAMTools SNP 398038 398038 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1221 SAMTools SNP 399745 399745 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 399828 399828 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1221 SAMTools SNP 400780 400780 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1221 SAMTools SNP 401592 401592 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 404947 404947 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 405477 405477 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1221 SAMTools SNP 405482 405482 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0054%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C161:33 scaffold1221 SAMTools SNP 405726 405726 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1221 SAMTools SNP 408970 408970 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 409880 409880 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1221 SAMTools SNP 412402 412402 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 414372 414372 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 416390 416390 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 417692 417692 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1221 SAMTools SNP 417712 417712 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 419038 419038 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 419714 419714 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 419775 419775 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 421142 421142 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 422442 422442 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 422789 422789 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 425313 425313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 426193 426193 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 426532 426532 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 426579 426579 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 426844 426844 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 427293 427293 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 428748 428748 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold1221 SAMTools SNP 428781 428781 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1221 SAMTools SNP 431224 431224 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1221 SAMTools SNP 431245 431245 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1221 SAMTools SNP 460864 460864 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 463533 463533 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 464511 464511 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 464577 464577 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1221 SAMTools SNP 467723 467723 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 474873 474873 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C26:29 scaffold1221 SAMTools SNP 475006 475006 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C30%2C0:57 scaffold1221 SAMTools SNP 475112 475112 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C57:60 scaffold1221 SAMTools SNP 503370 503370 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1221 SAMTools SNP 503375 503375 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.001%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1221 SAMTools SNP 504712 504712 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C7.8e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1221 SAMTools SNP 504752 504752 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1221 SAMTools SNP 504787 504787 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1221 SAMTools SNP 507707 507707 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 513939 513939 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 528320 528320 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C46%3BMQ%3D50%3BFQ%3D-77%3BPV4%3D1%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C50%2C0:97 scaffold1221 SAMTools SNP 531423 531423 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold1221 SAMTools SNP 531763 531763 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1221 SAMTools SNP 531788 531788 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 534518 534518 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1221 SAMTools SNP 534934 534934 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1221 SAMTools SNP 534963 534963 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 535301 535301 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1221 SAMTools SNP 535358 535358 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C117:99 scaffold1221 SAMTools SNP 535708 535708 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C146:99 scaffold1221 SAMTools SNP 535765 535765 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.46%2C0.0042%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C188:99 scaffold1221 SAMTools SNP 540617 540617 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 540689 540689 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1221 SAMTools SNP 540698 540698 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 541325 541325 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1221 SAMTools SNP 542284 542284 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1221 SAMTools SNP 562171 562171 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 572239 572239 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1221 SAMTools SNP 600575 600575 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1221 SAMTools SNP 610546 610546 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1222 SAMTools SNP 4182 4182 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 4214 4214 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1222 SAMTools SNP 5357 5357 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1222 SAMTools SNP 23106 23106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1222 SAMTools SNP 25044 25044 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.11%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1222 SAMTools SNP 25048 25048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 25065 25065 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.024%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1222 SAMTools SNP 25146 25146 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1222 SAMTools SNP 25381 25381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1222 SAMTools SNP 25465 25465 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 25997 25997 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1222 SAMTools SNP 26021 26021 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold1222 SAMTools SNP 37992 37992 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C27%2C0:51 scaffold1222 SAMTools SNP 38079 38079 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1222 SAMTools SNP 47562 47562 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1222 SAMTools SNP 47575 47575 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1222 SAMTools SNP 79784 79784 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 87324 87324 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1222 SAMTools SNP 89918 89918 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1222 SAMTools SNP 89976 89976 80 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C47%2C38%2C109%2C0%2C106:16 scaffold1222 SAMTools SNP 90045 90045 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1222 SAMTools SNP 90066 90066 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1222 SAMTools SNP 90655 90655 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.47%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1222 SAMTools SNP 90703 90703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.48%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 91876 91876 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C242:99 scaffold1222 SAMTools SNP 91906 91906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 92880 92880 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1e-19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C228:84 scaffold1222 SAMTools SNP 124752 124752 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 137255 137255 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1222 SAMTools SNP 138592 138592 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1222 SAMTools SNP 138660 138660 73 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C62%2C53%2C106%2C0%2C100:16 scaffold1222 SAMTools SNP 138666 138666 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1222 SAMTools SNP 139522 139522 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1222 SAMTools SNP 139535 139535 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1222 SAMTools SNP 140075 140075 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 142173 142173 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 142193 142193 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C229:44 scaffold1222 SAMTools SNP 142437 142437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1222 SAMTools SNP 144044 144044 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C19%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.095%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C37:40 scaffold1222 SAMTools SNP 144504 144504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1222 SAMTools SNP 144979 144979 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.035%2C0.00029%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1222 SAMTools SNP 145385 145385 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.045%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1222 SAMTools SNP 145430 145430 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C16%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1222 SAMTools SNP 145865 145865 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C10%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0002%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1222 SAMTools SNP 145902 145902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1222 SAMTools SNP 146268 146268 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C2.3e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1222 SAMTools SNP 147805 147805 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1222 SAMTools SNP 147828 147828 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1222 SAMTools SNP 147839 147839 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1222 SAMTools SNP 147854 147854 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1222 SAMTools SNP 148578 148578 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1222 SAMTools SNP 149167 149167 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1222 SAMTools SNP 149438 149438 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.48%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1222 SAMTools SNP 160727 160727 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1222 SAMTools SNP 179695 179695 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1222 SAMTools SNP 179925 179925 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1222 SAMTools SNP 180171 180171 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1222 SAMTools SNP 184975 184975 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 185909 185909 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 190152 190152 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1222 SAMTools SNP 190154 190154 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1222 SAMTools SNP 190236 190236 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1222 SAMTools SNP 190245 190245 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1222 SAMTools SNP 206391 206391 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 207036 207036 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 209839 209839 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 222165 222165 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 222171 222171 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 222413 222413 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1222 SAMTools SNP 230063 230063 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1222 SAMTools SNP 231522 231522 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1222 SAMTools SNP 235210 235210 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 235295 235295 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1222 SAMTools SNP 236890 236890 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 239311 239311 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1222 SAMTools SNP 241112 241112 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 242704 242704 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1222 SAMTools SNP 242917 242917 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C38:41 scaffold1222 SAMTools SNP 244429 244429 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 251351 251351 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C156:99 scaffold1222 SAMTools SNP 255413 255413 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1222 SAMTools SNP 256791 256791 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1222 SAMTools SNP 257116 257116 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1222 SAMTools SNP 258764 258764 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 258836 258836 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C76:79 scaffold1222 SAMTools SNP 259063 259063 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1222 SAMTools SNP 259513 259513 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 259519 259519 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 259573 259573 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C175:99 scaffold1222 SAMTools SNP 259816 259816 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C184:99 scaffold1222 SAMTools SNP 259921 259921 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.24%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1222 SAMTools SNP 260575 260575 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1222 SAMTools SNP 262679 262679 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C11%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0016%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1222 SAMTools SNP 263187 263187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 264278 264278 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1222 SAMTools SNP 264521 264521 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.017%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C191:39 scaffold1222 SAMTools SNP 264528 264528 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C61:64 scaffold1222 SAMTools SNP 264531 264531 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C139:44 scaffold1222 SAMTools SNP 265292 265292 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1222 SAMTools SNP 268727 268727 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1222 SAMTools SNP 268748 268748 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1222 SAMTools SNP 279375 279375 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 279846 279846 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C49%2C6%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.029%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 280156 280156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C46%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 280643 280643 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C19%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C241:99 scaffold1222 SAMTools SNP 280681 280681 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1222 SAMTools SNP 280727 280727 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C42%2C0:81 scaffold1222 SAMTools SNP 280793 280793 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1222 SAMTools SNP 285536 285536 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.49%2C1.4e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold1222 SAMTools SNP 286056 286056 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1222 SAMTools SNP 287495 287495 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C240:99 scaffold1222 SAMTools SNP 288039 288039 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1222 SAMTools SNP 288470 288470 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1222 SAMTools SNP 289640 289640 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1222 SAMTools SNP 289652 289652 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.4%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1222 SAMTools SNP 290135 290135 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1222 SAMTools SNP 292022 292022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 292046 292046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 300819 300819 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1222 SAMTools SNP 300840 300840 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1222 SAMTools SNP 304992 304992 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.14%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1222 SAMTools SNP 305894 305894 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1222 SAMTools SNP 305993 305993 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1222 SAMTools SNP 306885 306885 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.62%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1222 SAMTools SNP 306966 306966 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C95:98 scaffold1222 SAMTools SNP 307158 307158 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 307161 307161 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1222 SAMTools SNP 307188 307188 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1222 SAMTools SNP 307840 307840 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1222 SAMTools SNP 307843 307843 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1222 SAMTools SNP 308763 308763 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C18%2C0:33 scaffold1222 SAMTools SNP 308787 308787 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1222 SAMTools SNP 309330 309330 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 309663 309663 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C15%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D7.7e-14%2C1.2e-07%2C1%2C8.8e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1222 SAMTools SNP 309690 309690 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C0%2C17%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.55%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1222 SAMTools SNP 310299 310299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 310666 310666 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C29%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1222 SAMTools SNP 311555 311555 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1222 SAMTools SNP 311558 311558 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1222 SAMTools SNP 312138 312138 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C4%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1222 SAMTools SNP 313729 313729 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C12%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.56%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1222 SAMTools SNP 314224 314224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1222 SAMTools SNP 314260 314260 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1222 SAMTools SNP 314278 314278 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1222 SAMTools SNP 314320 314320 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.24%2C0.24%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1222 SAMTools SNP 315788 315788 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C7%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 316011 316011 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.013%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1222 SAMTools SNP 316026 316026 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C19%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.56%2C4.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1222 SAMTools SNP 316038 316038 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.41%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1222 SAMTools SNP 317446 317446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1222 SAMTools SNP 317971 317971 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 326952 326952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2379%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1058%2C163%2C962%2C182%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 326987 326987 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1222 SAMTools SNP 327117 327117 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3318%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D262%2C118%2C744%2C24%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1.2e-39%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1222 SAMTools SNP 327201 327201 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3667%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D318%2C2232%2C2%2C1115%3BMQ%3D50%3BFQ%3D73%3BPV4%3D7.8e-50%2C1.2e-142%2C1%2C1.4e-137;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1222 SAMTools SNP 327233 327233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3135%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C220%2C2837%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 335654 335654 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1222 SAMTools SNP 335672 335672 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D1%2C0.11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C41:37 scaffold1222 SAMTools SNP 335698 335698 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1222 SAMTools SNP 335726 335726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1222 SAMTools SNP 336209 336209 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 337360 337360 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.14%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C129:99 scaffold1222 SAMTools SNP 337425 337425 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D596%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D220%2C3%2C373%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C9.9e-202;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 337721 337721 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 337796 337796 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1222 SAMTools SNP 337797 337797 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1222 SAMTools SNP 338032 338032 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C102%2C0:99 scaffold1222 SAMTools SNP 338103 338103 20.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold1222 SAMTools SNP 341761 341761 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1622%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1620%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 341881 341881 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1222 SAMTools SNP 342134 342134 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2776%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D97%2C0%2C2581%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 342315 342315 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C20%2C0%2C149%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C42%2C0:81 scaffold1222 SAMTools SNP 342359 342359 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C70:36 scaffold1222 SAMTools SNP 342824 342824 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 345982 345982 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 345999 345999 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.21%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1222 SAMTools SNP 346338 346338 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C13%2C0%3BMQ%3D48%3BFQ%3D184%3BPV4%3D1%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C247:99 scaffold1222 SAMTools SNP 346343 346343 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C7%2C0%3BMQ%3D49%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1222 SAMTools SNP 346366 346366 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D45%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1222 SAMTools SNP 346367 346367 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D45%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1222 SAMTools SNP 346480 346480 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C212%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.4e-82%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C255%2C0:99 scaffold1222 SAMTools SNP 346510 346510 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C93%3BMQ%3D50%3BFQ%3D-260%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C233%2C0:99 scaffold1222 SAMTools SNP 346527 346527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 347161 347161 47.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1222 SAMTools SNP 350461 350461 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1751%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D22%2C0%2C165%2C2%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C3.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C84%2C0:72 scaffold1222 SAMTools SNP 351173 351173 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1068%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C671%2C0%2C397%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.2e-05%2C1%2C7.9e-77;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 351219 351219 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1222 SAMTools SNP 351921 351921 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D74.9%3BPV4%3D1%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C102:99 scaffold1222 SAMTools SNP 351969 351969 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.46%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C186:99 scaffold1222 SAMTools SNP 352520 352520 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1222 SAMTools SNP 352574 352574 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 353390 353390 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1222 SAMTools SNP 353996 353996 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C51%2C0:99 scaffold1222 SAMTools SNP 354971 354971 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C39%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.82%2C3e-39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1222 SAMTools SNP 355613 355613 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D50%2C40%2C0%2C13%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.00011%2C0.004%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1222 SAMTools SNP 355727 355727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C53%2C2%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1.6e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 356287 356287 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1222 SAMTools SNP 356810 356810 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1222 SAMTools SNP 359438 359438 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1222 SAMTools SNP 359465 359465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1222 SAMTools SNP 359760 359760 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C70%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1222 SAMTools SNP 359778 359778 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C1%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.41%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1222 SAMTools SNP 364272 364272 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C27%2C0:51 scaffold1222 SAMTools SNP 390184 390184 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1222 SAMTools SNP 400974 400974 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1222 SAMTools SNP 401554 401554 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1222 SAMTools SNP 401566 401566 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.071%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1222 SAMTools SNP 401806 401806 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.41%2C1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C247:91 scaffold1222 SAMTools SNP 406330 406330 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1222 SAMTools SNP 407443 407443 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1222 SAMTools SNP 407525 407525 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.27%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1222 SAMTools SNP 408408 408408 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0054%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1222 SAMTools SNP 416170 416170 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1222 SAMTools SNP 439542 439542 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1222 SAMTools SNP 441921 441921 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1222 SAMTools SNP 441941 441941 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C13%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D7.1e-05%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1222 SAMTools SNP 444398 444398 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1222 SAMTools SNP 445311 445311 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1222 SAMTools SNP 447189 447189 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1222 SAMTools SNP 448160 448160 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1222 SAMTools SNP 457229 457229 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1222 SAMTools SNP 457247 457247 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1222 SAMTools SNP 461283 461283 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1227 SAMTools SNP 483 483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 2495 2495 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1227 SAMTools SNP 2588 2588 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1227 SAMTools SNP 3098 3098 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C106%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C255%2C0:99 scaffold1227 SAMTools SNP 3138 3138 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C11%2C60%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D0.03%2C3.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C137%2C0:99 scaffold1227 SAMTools SNP 3843 3843 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1227 SAMTools SNP 5274 5274 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1227 SAMTools SNP 5315 5315 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1227 SAMTools SNP 11363 11363 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1227 SAMTools SNP 11402 11402 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 11408 11408 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 11436 11436 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1227 SAMTools SNP 12756 12756 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1227 SAMTools SNP 14082 14082 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1227 SAMTools SNP 14200 14200 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1227 SAMTools SNP 15221 15221 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1227 SAMTools SNP 16107 16107 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 16345 16345 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1227 SAMTools SNP 16640 16640 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 17861 17861 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1227 SAMTools SNP 20029 20029 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 20041 20041 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 29565 29565 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1227 SAMTools SNP 43820 43820 17.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1227 SAMTools SNP 43966 43966 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1227 SAMTools SNP 45261 45261 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1227 SAMTools SNP 50827 50827 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold1227 SAMTools SNP 51353 51353 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.2%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C119:99 scaffold1227 SAMTools SNP 51831 51831 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.47%2C0.092%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C135:28 scaffold1227 SAMTools SNP 52135 52135 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1227 SAMTools SNP 52309 52309 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1227 SAMTools SNP 52558 52558 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C2.1e-11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C156:99 scaffold1227 SAMTools SNP 52605 52605 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C182:41 scaffold1227 SAMTools SNP 52717 52717 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.62%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1227 SAMTools SNP 52740 52740 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.62%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1227 SAMTools SNP 53445 53445 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1227 SAMTools SNP 53507 53507 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1227 SAMTools SNP 56928 56928 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 57875 57875 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 57896 57896 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.024%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C222:63 scaffold1227 SAMTools SNP 57905 57905 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C228:58 scaffold1227 SAMTools SNP 58360 58360 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.022%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold1227 SAMTools SNP 58382 58382 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1227 SAMTools SNP 60483 60483 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C14%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.62%2C1.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C182:98 scaffold1227 SAMTools SNP 60549 60549 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1227 SAMTools SNP 61715 61715 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C13%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1227 SAMTools SNP 61724 61724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold1227 SAMTools SNP 81324 81324 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 81514 81514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 81592 81592 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1227 SAMTools SNP 82990 82990 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1227 SAMTools SNP 86985 86985 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1227 SAMTools SNP 87454 87454 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1227 SAMTools SNP 125458 125458 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00035%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold1227 SAMTools SNP 125483 125483 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold1227 SAMTools SNP 125498 125498 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C14%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D2.7e-05%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1227 SAMTools SNP 126854 126854 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C14%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D8.6e-05%2C4.6e-09%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1227 SAMTools SNP 127734 127734 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C13%2C35%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1227 SAMTools SNP 128089 128089 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C31%2C35%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1227 SAMTools SNP 128122 128122 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C0%2C11%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C5.4e-07%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1227 SAMTools SNP 128133 128133 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C4%2C81%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1227 SAMTools SNP 128143 128143 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C81%2C0%2C35%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0062%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1227 SAMTools SNP 128180 128180 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C22%2C67%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00042%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1227 SAMTools SNP 128586 128586 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1227 SAMTools SNP 129913 129913 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1227 SAMTools SNP 129955 129955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1227 SAMTools SNP 133980 133980 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1227 SAMTools SNP 133998 133998 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1227 SAMTools SNP 134344 134344 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 134405 134405 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 134422 134422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1227 SAMTools SNP 135043 135043 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1227 SAMTools SNP 135130 135130 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1227 SAMTools SNP 135520 135520 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D0.14%2C0.3%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C107:99 scaffold1227 SAMTools SNP 135541 135541 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1227 SAMTools SNP 135591 135591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C13%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C0.47%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1227 SAMTools SNP 136186 136186 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-79;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C70:99 scaffold1227 SAMTools SNP 136190 136190 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1227 SAMTools SNP 137515 137515 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 137875 137875 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1227 SAMTools SNP 139079 139079 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C1%3BMQ%3D44%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C104:99 scaffold1227 SAMTools SNP 139107 139107 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D44%3BFQ%3D62%3BPV4%3D0.19%2C1.7e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C127:92 scaffold1227 SAMTools SNP 139149 139149 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C42%2C0:81 scaffold1227 SAMTools SNP 139713 139713 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C33%2C0:63 scaffold1227 SAMTools SNP 139721 139721 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C33%2C0:63 scaffold1227 SAMTools SNP 156777 156777 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C33%2C0:63 scaffold1227 SAMTools SNP 156987 156987 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1.9e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C121:99 scaffold1227 SAMTools SNP 157640 157640 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1227 SAMTools SNP 159995 159995 62.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C6%2C0:10 scaffold1227 SAMTools SNP 160968 160968 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 162021 162021 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1227 SAMTools SNP 162051 162051 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1227 SAMTools SNP 164134 164134 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C162:28 scaffold1227 SAMTools SNP 164421 164421 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1227 SAMTools SNP 164882 164882 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1227 SAMTools SNP 165339 165339 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1227 SAMTools SNP 166273 166273 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0094%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C229:59 scaffold1227 SAMTools SNP 207708 207708 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1227 SAMTools SNP 207715 207715 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1227 SAMTools SNP 207750 207750 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1227 SAMTools SNP 209892 209892 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold1227 SAMTools SNP 210237 210237 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 211190 211190 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1227 SAMTools SNP 211980 211980 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1227 SAMTools SNP 213368 213368 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1227 SAMTools SNP 224073 224073 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1227 SAMTools SNP 227087 227087 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C99%2C0:99 scaffold1227 SAMTools SNP 228513 228513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1227 SAMTools SNP 228522 228522 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D137%3BPV4%3D5.2e-07%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1227 SAMTools SNP 228698 228698 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C15%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.28%2C2.3e-50%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1227 SAMTools SNP 231534 231534 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1227 SAMTools SNP 231576 231576 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.013%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1227 SAMTools SNP 237070 237070 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1228 SAMTools SNP 6969 6969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1228 SAMTools SNP 6999 6999 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1228 SAMTools SNP 7055 7055 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C2.1e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C158:75 scaffold1228 SAMTools SNP 7636 7636 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 11117 11117 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1228 SAMTools SNP 11128 11128 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1228 SAMTools SNP 11130 11130 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1228 SAMTools SNP 11633 11633 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 13100 13100 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C149:85 scaffold1228 SAMTools SNP 13114 13114 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1228 SAMTools SNP 13681 13681 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 17740 17740 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 25871 25871 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold1228 SAMTools SNP 26935 26935 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold1228 SAMTools SNP 27196 27196 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold1228 SAMTools SNP 30184 30184 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1228 SAMTools SNP 31065 31065 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 31800 31800 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1228 SAMTools SNP 37207 37207 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C35%2C3%2C12%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.52%2C5.8e-33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1228 SAMTools SNP 37759 37759 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1228 SAMTools SNP 38114 38114 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C9%2C13%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1228 SAMTools SNP 38168 38168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1228 SAMTools SNP 53151 53151 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1228 SAMTools SNP 59280 59280 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D45%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1228 SAMTools SNP 59307 59307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C11%2C9%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.76%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 59634 59634 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C12%2C2%3BMQ%3D49%3BFQ%3D210%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1228 SAMTools SNP 59667 59667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C9%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 60120 60120 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1228 SAMTools SNP 60127 60127 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold1228 SAMTools SNP 63328 63328 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1228 SAMTools SNP 63535 63535 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1228 SAMTools SNP 64863 64863 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 65150 65150 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 65162 65162 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1228 SAMTools SNP 65432 65432 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1228 SAMTools SNP 65701 65701 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1228 SAMTools SNP 65749 65749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1228 SAMTools SNP 66470 66470 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1228 SAMTools SNP 67288 67288 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1228 SAMTools SNP 67289 67289 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.51%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1228 SAMTools SNP 67731 67731 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C3.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C212:64 scaffold1228 SAMTools SNP 68089 68089 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1228 SAMTools SNP 68104 68104 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1228 SAMTools SNP 69580 69580 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 69800 69800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C50%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold1228 SAMTools SNP 69908 69908 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1228 SAMTools SNP 69951 69951 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1228 SAMTools SNP 69958 69958 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1228 SAMTools SNP 70322 70322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 70628 70628 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 70708 70708 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 71217 71217 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1228 SAMTools SNP 82938 82938 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1228 SAMTools SNP 85934 85934 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold1228 SAMTools SNP 86442 86442 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C206:56 scaffold1228 SAMTools SNP 86946 86946 3.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1228 SAMTools SNP 128934 128934 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1228 SAMTools SNP 135891 135891 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1228 SAMTools SNP 136138 136138 50.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold1228 SAMTools SNP 136647 136647 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1228 SAMTools SNP 137057 137057 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1228 SAMTools SNP 172818 172818 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C90%2C0:99 scaffold1228 SAMTools SNP 173246 173246 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C117%2C0:99 scaffold1228 SAMTools SNP 218445 218445 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 233962 233962 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 234022 234022 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 234040 234040 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1228 SAMTools SNP 238764 238764 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 240980 240980 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 240998 240998 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1228 SAMTools SNP 241034 241034 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1228 SAMTools SNP 241319 241319 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C27%2C0:51 scaffold1228 SAMTools SNP 241717 241717 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 241754 241754 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1228 SAMTools SNP 241789 241789 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 241831 241831 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 241834 241834 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 242108 242108 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1228 SAMTools SNP 242147 242147 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1228 SAMTools SNP 242365 242365 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1228 SAMTools SNP 242798 242798 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 243859 243859 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 243868 243868 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1228 SAMTools SNP 243880 243880 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold1228 SAMTools SNP 243955 243955 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 244350 244350 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 244362 244362 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 244371 244371 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 244425 244425 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 244656 244656 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1228 SAMTools SNP 244721 244721 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C242:99 scaffold1228 SAMTools SNP 244748 244748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold1228 SAMTools SNP 245363 245363 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1228 SAMTools SNP 246475 246475 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 256405 256405 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 256478 256478 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1228 SAMTools SNP 259719 259719 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C66:46 scaffold1228 SAMTools SNP 259963 259963 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 259964 259964 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 261459 261459 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1228 SAMTools SNP 263983 263983 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 266261 266261 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1228 SAMTools SNP 266272 266272 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1228 SAMTools SNP 266312 266312 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C231:82 scaffold1228 SAMTools SNP 266817 266817 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C23%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.04%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1228 SAMTools SNP 266924 266924 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 268954 268954 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1228 SAMTools SNP 268972 268972 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1228 SAMTools SNP 269012 269012 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C36%2C0:69 scaffold1228 SAMTools SNP 271678 271678 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.47%2C0.26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C210:99 scaffold1228 SAMTools SNP 271786 271786 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C26%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1.2e-27%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C153:76 scaffold1228 SAMTools SNP 271958 271958 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.5%2C9.4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1228 SAMTools SNP 272004 272004 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C18%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C2.7e-29%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1228 SAMTools SNP 275991 275991 17.1 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1228 SAMTools SNP 276050 276050 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.47%2C7.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C194:86 scaffold1228 SAMTools SNP 277060 277060 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C117%2C0:99 scaffold1228 SAMTools SNP 340787 340787 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1228 SAMTools SNP 341614 341614 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1228 SAMTools SNP 341648 341648 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1228 SAMTools SNP 369871 369871 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1228 SAMTools SNP 369952 369952 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1228 SAMTools SNP 370004 370004 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1228 SAMTools SNP 376242 376242 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1228 SAMTools SNP 377732 377732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1228 SAMTools SNP 381343 381343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 381350 381350 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C12%2C0:21 scaffold1228 SAMTools SNP 382397 382397 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1228 SAMTools SNP 384815 384815 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 390456 390456 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.5e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C147:49 scaffold1228 SAMTools SNP 390576 390576 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C8%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C6.6e-31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1228 SAMTools SNP 390603 390603 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C7%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.13%2C2.5e-33%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1228 SAMTools SNP 390769 390769 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C19%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C105%2C0:99 scaffold1228 SAMTools SNP 390798 390798 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C8%2C12%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.72%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1228 SAMTools SNP 390984 390984 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C33%2C0:63 scaffold1228 SAMTools SNP 391053 391053 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C69%2C0:99 scaffold1228 SAMTools SNP 391517 391517 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1228 SAMTools SNP 399308 399308 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 404123 404123 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1228 SAMTools SNP 404129 404129 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1228 SAMTools SNP 405288 405288 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1228 SAMTools SNP 406141 406141 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 407399 407399 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 408453 408453 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1228 SAMTools SNP 408507 408507 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C109:28 scaffold1228 SAMTools SNP 408534 408534 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 408735 408735 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1228 SAMTools SNP 409085 409085 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 409139 409139 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1228 SAMTools SNP 410286 410286 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1228 SAMTools SNP 410736 410736 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1228 SAMTools SNP 428094 428094 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 428137 428137 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1228 SAMTools SNP 432130 432130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D726%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D356%2C92%2C116%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-12%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 432139 432139 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D897%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D243%2C125%2C294%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-05%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 432383 432383 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1123%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D295%2C249%2C280%2C299%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C2.8e-05%2C0.15%2C8.6e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 432691 432691 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1228 SAMTools SNP 432715 432715 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1228 SAMTools SNP 432810 432810 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1228 SAMTools SNP 433099 433099 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1419%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D512%2C441%2C89%2C139%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.7e-05%2C1.1e-08%2C1%2C2.4e-42;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1228 SAMTools SNP 433100 433100 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1464%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D487%2C477%2C97%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C0.0021%2C1%2C4.8e-53;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 435500 435500 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.78%2C3.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1228 SAMTools SNP 435584 435584 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C0%2C13%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1228 SAMTools SNP 435587 435587 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C0%2C13%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1228 SAMTools SNP 435793 435793 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0104%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1228 SAMTools SNP 436093 436093 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C209:99 scaffold1228 SAMTools SNP 436100 436100 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold1228 SAMTools SNP 436292 436292 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C207:99 scaffold1228 SAMTools SNP 449150 449150 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 449364 449364 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 449400 449400 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.009%2C0.41%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1228 SAMTools SNP 449445 449445 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.087%2C1.5e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1228 SAMTools SNP 449742 449742 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 449769 449769 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1228 SAMTools SNP 449991 449991 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1228 SAMTools SNP 451326 451326 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1228 SAMTools SNP 451362 451362 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1228 SAMTools SNP 451383 451383 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C195:99 scaffold1228 SAMTools SNP 456771 456771 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C145:99 scaffold1228 SAMTools SNP 456792 456792 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold1228 SAMTools SNP 457098 457098 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1228 SAMTools SNP 457221 457221 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1228 SAMTools SNP 459201 459201 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 459812 459812 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1228 SAMTools SNP 461285 461285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1228 SAMTools SNP 461767 461767 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1228 SAMTools SNP 461818 461818 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1228 SAMTools SNP 463971 463971 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.023%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1228 SAMTools SNP 463977 463977 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C0.03%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1228 SAMTools SNP 466546 466546 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.18%2C8.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C223:46 scaffold1228 SAMTools SNP 466714 466714 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.17%2C0.064%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C229:76 scaffold1228 SAMTools SNP 466751 466751 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.27%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1228 SAMTools SNP 467258 467258 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1228 SAMTools SNP 468746 468746 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C19%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.49%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1228 SAMTools SNP 468781 468781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C60%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1228 SAMTools SNP 469517 469517 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.45%2C9.7e-17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1228 SAMTools SNP 469563 469563 74 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C27%2C0%2C100%2C10%2C97:51 scaffold1228 SAMTools SNP 469958 469958 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1228 SAMTools SNP 470936 470936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1228 SAMTools SNP 471126 471126 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold1228 SAMTools SNP 471171 471171 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold123 SAMTools SNP 41520 41520 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold123 SAMTools SNP 41616 41616 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold123 SAMTools SNP 41637 41637 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold123 SAMTools SNP 127651 127651 7.08 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold123 SAMTools SNP 127668 127668 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold123 SAMTools SNP 130371 130371 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold123 SAMTools SNP 130398 130398 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold123 SAMTools SNP 214724 214724 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold123 SAMTools SNP 215726 215726 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold123 SAMTools SNP 216059 216059 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C246:48 scaffold123 SAMTools SNP 216083 216083 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.52%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C159:99 scaffold123 SAMTools SNP 216227 216227 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold123 SAMTools SNP 216500 216500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold123 SAMTools SNP 216888 216888 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.007%2C8.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C225:64 scaffold123 SAMTools SNP 216950 216950 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold123 SAMTools SNP 216964 216964 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold123 SAMTools SNP 217048 217048 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold123 SAMTools SNP 217401 217401 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C167:99 scaffold123 SAMTools SNP 217416 217416 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.42%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold123 SAMTools SNP 217609 217609 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.084%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold123 SAMTools SNP 217615 217615 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold123 SAMTools SNP 217663 217663 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold123 SAMTools SNP 218715 218715 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold123 SAMTools SNP 227955 227955 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold123 SAMTools SNP 229577 229577 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold123 SAMTools SNP 229940 229940 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C45%2C0:87 scaffold123 SAMTools SNP 237089 237089 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold123 SAMTools SNP 237706 237706 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C3%2C5%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold123 SAMTools SNP 238561 238561 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold123 SAMTools SNP 244401 244401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold123 SAMTools SNP 245133 245133 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold123 SAMTools SNP 245184 245184 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold123 SAMTools SNP 245382 245382 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold123 SAMTools SNP 247622 247622 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold123 SAMTools SNP 247792 247792 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1230 SAMTools SNP 11499 11499 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1230 SAMTools SNP 12562 12562 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1230 SAMTools SNP 28911 28911 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1230 SAMTools SNP 28950 28950 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1230 SAMTools SNP 36924 36924 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1230 SAMTools SNP 41448 41448 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1230 SAMTools SNP 42558 42558 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1230 SAMTools SNP 44784 44784 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold1230 SAMTools SNP 45771 45771 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1230 SAMTools SNP 56879 56879 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1230 SAMTools SNP 78202 78202 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1230 SAMTools SNP 86588 86588 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1230 SAMTools SNP 86595 86595 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1231 SAMTools SNP 18390 18390 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold1231 SAMTools SNP 22683 22683 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1231 SAMTools SNP 23788 23788 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C30%2C39%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C0.5%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1231 SAMTools SNP 29462 29462 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1231 SAMTools SNP 31849 31849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1231 SAMTools SNP 42305 42305 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.25%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold1231 SAMTools SNP 44937 44937 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1231 SAMTools SNP 47903 47903 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1231 SAMTools SNP 48784 48784 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C36%2C0:69 scaffold1231 SAMTools SNP 49187 49187 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C54%2C0:99 scaffold1231 SAMTools SNP 50939 50939 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C27%2C0:51 scaffold1231 SAMTools SNP 51284 51284 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold1231 SAMTools SNP 82922 82922 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1231 SAMTools SNP 91900 91900 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold1231 SAMTools SNP 96928 96928 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C69%2C0:99 scaffold1232 SAMTools SNP 48 48 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 369 369 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1232 SAMTools SNP 902 902 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1232 SAMTools SNP 1817 1817 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1232 SAMTools SNP 1829 1829 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1232 SAMTools SNP 1845 1845 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1232 SAMTools SNP 2556 2556 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1232 SAMTools SNP 2726 2726 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1232 SAMTools SNP 4560 4560 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D1%2C2.1e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C32:35 scaffold1232 SAMTools SNP 5590 5590 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1232 SAMTools SNP 5634 5634 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 6054 6054 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1232 SAMTools SNP 6375 6375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.049%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 6569 6569 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C127:99 scaffold1232 SAMTools SNP 8922 8922 23.3 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C6%2C49%2C0%2C46:26 scaffold1232 SAMTools SNP 9376 9376 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1232 SAMTools SNP 9442 9442 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C132:99 scaffold1232 SAMTools SNP 9908 9908 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1232 SAMTools SNP 9929 9929 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1232 SAMTools SNP 9971 9971 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1232 SAMTools SNP 9977 9977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 9989 9989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1232 SAMTools SNP 10676 10676 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1232 SAMTools SNP 11165 11165 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1232 SAMTools SNP 11270 11270 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1232 SAMTools SNP 11273 11273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1232 SAMTools SNP 11525 11525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1232 SAMTools SNP 11899 11899 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1232 SAMTools SNP 11911 11911 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C35:38 scaffold1232 SAMTools SNP 12103 12103 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1232 SAMTools SNP 12150 12150 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1232 SAMTools SNP 12169 12169 4.14 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5024%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-8%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C20:25 scaffold1232 SAMTools SNP 12340 12340 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1232 SAMTools SNP 12741 12741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1232 SAMTools SNP 12756 12756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 13053 13053 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold1232 SAMTools SNP 13474 13474 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1232 SAMTools SNP 13888 13888 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 14044 14044 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1232 SAMTools SNP 14657 14657 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1232 SAMTools SNP 14675 14675 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1232 SAMTools SNP 14678 14678 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.28%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1232 SAMTools SNP 18270 18270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1232 SAMTools SNP 18569 18569 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1232 SAMTools SNP 18680 18680 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1232 SAMTools SNP 18865 18865 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C18%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.034%2C2.1e-10%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1232 SAMTools SNP 20453 20453 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1232 SAMTools SNP 20497 20497 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.42%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1232 SAMTools SNP 24065 24065 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1232 SAMTools SNP 47877 47877 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1232 SAMTools SNP 48155 48155 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1232 SAMTools SNP 48197 48197 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1232 SAMTools SNP 48411 48411 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1232 SAMTools SNP 48884 48884 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1232 SAMTools SNP 49246 49246 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold1232 SAMTools SNP 49250 49250 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.35%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1232 SAMTools SNP 50032 50032 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold1232 SAMTools SNP 50471 50471 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C136:74 scaffold1232 SAMTools SNP 50492 50492 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C0.33%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C38:41 scaffold1232 SAMTools SNP 50516 50516 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D46%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C29:32 scaffold1232 SAMTools SNP 51640 51640 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C112:99 scaffold1232 SAMTools SNP 51683 51683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1232 SAMTools SNP 51909 51909 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1232 SAMTools SNP 51916 51916 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1232 SAMTools SNP 51995 51995 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1232 SAMTools SNP 52019 52019 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 52081 52081 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1232 SAMTools SNP 52196 52196 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold1232 SAMTools SNP 53982 53982 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1232 SAMTools SNP 75220 75220 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1232 SAMTools SNP 75516 75516 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 81503 81503 144 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C36%2C0%2C158%2C6%2C155:69 scaffold1232 SAMTools SNP 81518 81518 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C63%2C0:99 scaffold1232 SAMTools SNP 82211 82211 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1232 SAMTools SNP 83776 83776 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C30%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1232 SAMTools SNP 83815 83815 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1232 SAMTools SNP 84242 84242 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1232 SAMTools SNP 84287 84287 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1232 SAMTools SNP 84586 84586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1232 SAMTools SNP 84901 84901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1232 SAMTools SNP 85123 85123 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold1232 SAMTools SNP 85326 85326 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1232 SAMTools SNP 86392 86392 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 88760 88760 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1232 SAMTools SNP 88937 88937 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1232 SAMTools SNP 89224 89224 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1232 SAMTools SNP 89248 89248 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1232 SAMTools SNP 89340 89340 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1232 SAMTools SNP 90601 90601 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C74:77 scaffold1232 SAMTools SNP 90628 90628 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1232 SAMTools SNP 91584 91584 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1232 SAMTools SNP 94486 94486 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1232 SAMTools SNP 94892 94892 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C20%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D2.3e-05%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1232 SAMTools SNP 94919 94919 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1232 SAMTools SNP 95181 95181 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C1%2C17%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1e-06%2C0.14%2C1%2C3.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1232 SAMTools SNP 95203 95203 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1232 SAMTools SNP 95287 95287 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C45%2C6%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0055%2C0.48%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1232 SAMTools SNP 95867 95867 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C49%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1232 SAMTools SNP 95916 95916 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1232 SAMTools SNP 96346 96346 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold1232 SAMTools SNP 96597 96597 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1232 SAMTools SNP 96730 96730 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 97660 97660 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C33%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1232 SAMTools SNP 99048 99048 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C10%2C45%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1.8e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 99126 99126 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C29%2C51%2C33%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.12%2C5e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1232 SAMTools SNP 99331 99331 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C39%2C71%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 99336 99336 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C37%2C76%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.26%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 99676 99676 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C78%2C32%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C0.025%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 99869 99869 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C71%2C11%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C4.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 99950 99950 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C56%2C0%2C13%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.58%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1232 SAMTools SNP 99977 99977 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C8%3BMQ%3D46%3BFQ%3D108%3BPV4%3D0.16%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1232 SAMTools SNP 105616 105616 6.17 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1232 SAMTools SNP 105751 105751 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C106%2C17%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C2.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 105798 105798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C125%2C62%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 106186 106186 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1232 SAMTools SNP 106225 106225 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 106869 106869 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D177%2C31%2C0%2C112%3BMQ%3D49%3BFQ%3D123%3BPV4%3D5.3e-58%2C2.6e-98%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1232 SAMTools SNP 106972 106972 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C96%2C10%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.029%2C9.5e-10%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1232 SAMTools SNP 106986 106986 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C50%2C10%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 107040 107040 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C52%2C123%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.25%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 109047 109047 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C208%2C35%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 109055 109055 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D208%2C26%2C66%2C1%3BMQ%3D48%3BFQ%3D51%3BPV4%3D0.014%2C0.45%2C0.079%2C1.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1232 SAMTools SNP 117295 117295 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0011%2C5.5e-09%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1232 SAMTools SNP 117676 117676 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C13%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.042%2C1.2e-34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1232 SAMTools SNP 117739 117739 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.52%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C204:99 scaffold1232 SAMTools SNP 118097 118097 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C151%2C0:99 scaffold1232 SAMTools SNP 118673 118673 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.02%2C0.00076%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1232 SAMTools SNP 118965 118965 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 119082 119082 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C10%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.47%2C2.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1232 SAMTools SNP 119233 119233 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 119602 119602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1232 SAMTools SNP 119626 119626 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1232 SAMTools SNP 119684 119684 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.28%2C6.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1232 SAMTools SNP 120074 120074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1232 SAMTools SNP 120162 120162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 121127 121127 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.14%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 121399 121399 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1232 SAMTools SNP 121400 121400 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1232 SAMTools SNP 121481 121481 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.16%2C0.01%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1232 SAMTools SNP 121494 121494 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1232 SAMTools SNP 122190 122190 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C8.7e-21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1232 SAMTools SNP 123801 123801 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1232 SAMTools SNP 131083 131083 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C0.32%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1232 SAMTools SNP 131183 131183 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.22%2C0.013%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1232 SAMTools SNP 131229 131229 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold1232 SAMTools SNP 131249 131249 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.066%2C0.0039%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C218:89 scaffold1232 SAMTools SNP 132190 132190 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1232 SAMTools SNP 134873 134873 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1232 SAMTools SNP 134944 134944 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.1%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C112:57 scaffold1232 SAMTools SNP 141182 141182 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1232 SAMTools SNP 141227 141227 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold1232 SAMTools SNP 142281 142281 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C16%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 148821 148821 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold1232 SAMTools SNP 148857 148857 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1232 SAMTools SNP 149196 149196 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C4%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1232 SAMTools SNP 150001 150001 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.016%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1232 SAMTools SNP 150273 150273 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1232 SAMTools SNP 151580 151580 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00068%2C1.8e-12%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1232 SAMTools SNP 151715 151715 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold1232 SAMTools SNP 152090 152090 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C14%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.018%2C0.21%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C199:99 scaffold1232 SAMTools SNP 152572 152572 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C1.6e-05%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C162:30 scaffold1232 SAMTools SNP 152744 152744 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.074%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C244:99 scaffold1232 SAMTools SNP 153043 153043 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.00037%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 153113 153113 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 153563 153563 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.11%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1232 SAMTools SNP 153632 153632 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0014%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C241:99 scaffold1232 SAMTools SNP 153819 153819 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C0.03%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold1232 SAMTools SNP 154976 154976 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C3%2C58%2C4%3BMQ%3D22%3BFQ%3D213%3BPV4%3D0.44%2C0.26%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1232 SAMTools SNP 156975 156975 8.07 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C0%2C15%3BMQ%3D11%3BFQ%3D-41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C14%2C0:17 scaffold1232 SAMTools SNP 159484 159484 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1232 SAMTools SNP 159490 159490 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1232 SAMTools SNP 159983 159983 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D33%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C42%2C0:81 scaffold1232 SAMTools SNP 160079 160079 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.15%2C4.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1232 SAMTools SNP 160510 160510 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D22.6%3BPV4%3D1%2C7.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C60:53 scaffold1232 SAMTools SNP 161643 161643 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1232 SAMTools SNP 163510 163510 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1232 SAMTools SNP 163799 163799 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1232 SAMTools SNP 164316 164316 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1232 SAMTools SNP 168104 168104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1232 SAMTools SNP 168145 168145 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C3%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1232 SAMTools SNP 168517 168517 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C9.3e-08%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1232 SAMTools SNP 168524 168524 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.53%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1232 SAMTools SNP 168530 168530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1232 SAMTools SNP 168644 168644 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C21%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.17%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1232 SAMTools SNP 168941 168941 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1232 SAMTools SNP 168983 168983 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1232 SAMTools SNP 169173 169173 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1232 SAMTools SNP 169203 169203 40 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C182%2C250%2C0%2C229:45 scaffold1232 SAMTools SNP 169219 169219 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1232 SAMTools SNP 173215 173215 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C0%2C15%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0041%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1232 SAMTools SNP 176129 176129 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1232 SAMTools SNP 176484 176484 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1232 SAMTools SNP 177348 177348 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1232 SAMTools SNP 177357 177357 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C140:99 scaffold1232 SAMTools SNP 177360 177360 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1232 SAMTools SNP 177372 177372 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C160:99 scaffold1232 SAMTools SNP 177403 177403 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.52%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1232 SAMTools SNP 178051 178051 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C237:60 scaffold1232 SAMTools SNP 178368 178368 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C10%2C17%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1232 SAMTools SNP 178629 178629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 178891 178891 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1232 SAMTools SNP 178903 178903 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1232 SAMTools SNP 179168 179168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1232 SAMTools SNP 180774 180774 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1232 SAMTools SNP 181753 181753 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold1232 SAMTools SNP 183370 183370 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold1232 SAMTools SNP 183777 183777 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1232 SAMTools SNP 184037 184037 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1232 SAMTools SNP 184126 184126 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C20:23 scaffold1232 SAMTools SNP 184140 184140 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1232 SAMTools SNP 184477 184477 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1232 SAMTools SNP 184640 184640 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1232 SAMTools SNP 184661 184661 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1232 SAMTools SNP 185521 185521 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C8%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1232 SAMTools SNP 185670 185670 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C0.18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C174:99 scaffold1232 SAMTools SNP 185745 185745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1232 SAMTools SNP 186004 186004 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1232 SAMTools SNP 186201 186201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1232 SAMTools SNP 186242 186242 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 186623 186623 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D2%2C1%2C36%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.15%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C23:26 scaffold1232 SAMTools SNP 189890 189890 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1232 SAMTools SNP 189900 189900 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C4.7e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C107:99 scaffold1232 SAMTools SNP 189959 189959 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C236:99 scaffold1232 SAMTools SNP 191338 191338 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1232 SAMTools SNP 191360 191360 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1232 SAMTools SNP 191641 191641 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1232 SAMTools SNP 191701 191701 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 191723 191723 61.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold1232 SAMTools SNP 193814 193814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C44%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 195822 195822 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 196151 196151 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C36%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 196175 196175 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C154%2C20%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 196935 196935 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1232 SAMTools SNP 198363 198363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D953%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C69%2C844%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 198555 198555 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C137%2C20%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-06%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 198567 198567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C137%2C84%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 199901 199901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C17%2C317%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 199955 199955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D671%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C114%2C132%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 200003 200003 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C298%2C14%2C113%3BMQ%3D48%3BFQ%3D108%3BPV4%3D0.6%2C4.8e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1232 SAMTools SNP 200254 200254 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C287%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.34%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 200598 200598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C77%3BMQ%3D27%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1232 SAMTools SNP 204530 204530 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.51%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1232 SAMTools SNP 206415 206415 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1232 SAMTools SNP 213156 213156 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1232 SAMTools SNP 213510 213510 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1232 SAMTools SNP 213513 213513 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1232 SAMTools SNP 213650 213650 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C33%2C0:63 scaffold1232 SAMTools SNP 213746 213746 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold1232 SAMTools SNP 317748 317748 30.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1232 SAMTools SNP 318037 318037 51.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold1232 SAMTools SNP 319533 319533 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1232 SAMTools SNP 323766 323766 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1232 SAMTools SNP 407621 407621 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1232 SAMTools SNP 407636 407636 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1232 SAMTools SNP 409723 409723 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C78%2C0:99 scaffold1232 SAMTools SNP 412295 412295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 415265 415265 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 416616 416616 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.039%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1232 SAMTools SNP 418263 418263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C26%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1232 SAMTools SNP 418304 418304 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 24940 24940 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1234 SAMTools SNP 25224 25224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C19%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1234 SAMTools SNP 27179 27179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1234 SAMTools SNP 27252 27252 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1234 SAMTools SNP 27253 27253 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1234 SAMTools SNP 27300 27300 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C8%2C6%3BMQ%3D37%3BFQ%3D90%3BPV4%3D0.35%2C1%2C0.15%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C232:99 scaffold1234 SAMTools SNP 44862 44862 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C24%2C15%2C25%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.2%2C0.34%2C0.0081%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 44966 44966 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C33%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00094%2C1%2C0.23%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 45157 45157 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1234 SAMTools SNP 45730 45730 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1234 SAMTools SNP 45955 45955 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C3%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.71%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1234 SAMTools SNP 45973 45973 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.28%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1234 SAMTools SNP 46012 46012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1234 SAMTools SNP 46259 46259 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C41%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 46702 46702 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1234 SAMTools SNP 47600 47600 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1234 SAMTools SNP 48067 48067 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1234 SAMTools SNP 48082 48082 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1234 SAMTools SNP 48142 48142 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.22%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1234 SAMTools SNP 48166 48166 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1234 SAMTools SNP 48196 48196 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 48442 48442 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.55%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1234 SAMTools SNP 48719 48719 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 48827 48827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 49367 49367 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1234 SAMTools SNP 50505 50505 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C82%2C1%2C21%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.12%2C0.1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1234 SAMTools SNP 50950 50950 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C16%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1234 SAMTools SNP 51535 51535 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C58%2C21%2C148%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.48%2C1.1e-166%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1234 SAMTools SNP 51964 51964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C20%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 52352 52352 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C65%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 52454 52454 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C5%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.74%2C4e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1234 SAMTools SNP 60975 60975 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C6.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1234 SAMTools SNP 61020 61020 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 61077 61077 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C26%2C18%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 61885 61885 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C48%2C14%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 61996 61996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1234 SAMTools SNP 63520 63520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C27%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.13%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1234 SAMTools SNP 66760 66760 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1234 SAMTools SNP 67986 67986 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1234 SAMTools SNP 67999 67999 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1234 SAMTools SNP 68022 68022 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1234 SAMTools SNP 68453 68453 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 68462 68462 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 68683 68683 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1234 SAMTools SNP 72584 72584 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1234 SAMTools SNP 72599 72599 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.43%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C152:57 scaffold1234 SAMTools SNP 72675 72675 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1234 SAMTools SNP 73023 73023 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 73188 73188 92.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1234 SAMTools SNP 73219 73219 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1234 SAMTools SNP 78160 78160 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 79227 79227 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 79494 79494 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1234 SAMTools SNP 79669 79669 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1234 SAMTools SNP 81912 81912 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1234 SAMTools SNP 82435 82435 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1234 SAMTools SNP 82514 82514 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1234 SAMTools SNP 83313 83313 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1234 SAMTools SNP 83341 83341 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1234 SAMTools SNP 84594 84594 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1234 SAMTools SNP 84616 84616 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1234 SAMTools SNP 85309 85309 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1234 SAMTools SNP 85729 85729 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1234 SAMTools SNP 85820 85820 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 86024 86024 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 86152 86152 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1234 SAMTools SNP 86253 86253 158 . . REF=A;ALT=C,G,T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C90%2C0%2C152%2C5%2C140%2C181%2C65%2C135%2C178:99 scaffold1234 SAMTools SNP 86262 86262 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C54%2C0:99 scaffold1234 SAMTools SNP 86286 86286 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C2.1e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C23:26 scaffold1234 SAMTools SNP 87830 87830 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1234 SAMTools SNP 87835 87835 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.011%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C170:28 scaffold1234 SAMTools SNP 88334 88334 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1234 SAMTools SNP 92905 92905 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 92983 92983 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1234 SAMTools SNP 93994 93994 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1234 SAMTools SNP 94698 94698 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D44%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C133:99 scaffold1234 SAMTools SNP 95795 95795 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1235 SAMTools SNP 3609 3609 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1235 SAMTools SNP 3679 3679 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C27%2C0:51 scaffold1235 SAMTools SNP 3745 3745 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold1235 SAMTools SNP 17017 17017 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 17033 17033 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 17466 17466 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 21200 21200 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 28013 28013 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.5e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C110:77 scaffold1235 SAMTools SNP 68034 68034 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C0%2C72%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1235 SAMTools SNP 69366 69366 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C32%2C18%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.011%2C0.0011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1235 SAMTools SNP 69905 69905 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C106%2C3%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.47%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 69935 69935 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C46%2C3%2C12%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1235 SAMTools SNP 69971 69971 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold1235 SAMTools SNP 70377 70377 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C33%2C8%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1235 SAMTools SNP 70393 70393 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C33%2C8%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.49%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1235 SAMTools SNP 70440 70440 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C32%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1235 SAMTools SNP 71229 71229 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.03%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1235 SAMTools SNP 71238 71238 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.04%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1235 SAMTools SNP 71262 71262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.46%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 71676 71676 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C14%2C30%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0016%2C4.6e-17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1235 SAMTools SNP 71796 71796 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C19%2C40%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 73357 73357 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C12%2C155%2C104%3BMQ%3D50%3BFQ%3D-248%3BPV4%3D0.057%2C2.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C221%2C0:99 scaffold1235 SAMTools SNP 73825 73825 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C48%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 74527 74527 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C54%2C5%2C11%3BMQ%3D48%3BFQ%3D223%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1235 SAMTools SNP 74592 74592 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C26%2C28%2C4%3BMQ%3D25%3BFQ%3D44%3BPV4%3D0.0049%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1235 SAMTools SNP 74625 74625 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C36%2C5%3BMQ%3D21%3BFQ%3D56%3BPV4%3D0.0061%2C1%2C0.064%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C182:86 scaffold1235 SAMTools SNP 79467 79467 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C9.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C17:20 scaffold1235 SAMTools SNP 79757 79757 15.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold1235 SAMTools SNP 81794 81794 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C18%2C37%2C21%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.18%2C7.3e-113%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1235 SAMTools SNP 81913 81913 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C60%2C0:99 scaffold1235 SAMTools SNP 104033 104033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1235 SAMTools SNP 105085 105085 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1235 SAMTools SNP 105109 105109 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C140:99 scaffold1235 SAMTools SNP 106642 106642 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1235 SAMTools SNP 106682 106682 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold1235 SAMTools SNP 106945 106945 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1235 SAMTools SNP 106995 106995 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1235 SAMTools SNP 110556 110556 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 111572 111572 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1235 SAMTools SNP 111601 111601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 111625 111625 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1235 SAMTools SNP 112127 112127 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1235 SAMTools SNP 112209 112209 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1235 SAMTools SNP 112218 112218 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold1235 SAMTools SNP 112958 112958 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1235 SAMTools SNP 112993 112993 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1235 SAMTools SNP 115316 115316 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C197:66 scaffold1235 SAMTools SNP 115690 115690 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1235 SAMTools SNP 116262 116262 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1235 SAMTools SNP 119461 119461 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1235 SAMTools SNP 121334 121334 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 121686 121686 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 125281 125281 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 127949 127949 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1235 SAMTools SNP 127988 127988 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1235 SAMTools SNP 127989 127989 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1235 SAMTools SNP 137326 137326 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 139037 139037 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C31%2C9%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.56%2C2e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1235 SAMTools SNP 139118 139118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C31%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.2e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 139289 139289 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C21%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.19%2C2.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1235 SAMTools SNP 139391 139391 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1235 SAMTools SNP 139670 139670 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C39%2C0:75 scaffold1235 SAMTools SNP 149337 149337 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 153974 153974 57.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold1235 SAMTools SNP 154895 154895 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1235 SAMTools SNP 154984 154984 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1235 SAMTools SNP 159550 159550 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 179067 179067 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C6.3e-09%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C20:23 scaffold1235 SAMTools SNP 179196 179196 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C9%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1235 SAMTools SNP 179211 179211 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.33%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold1235 SAMTools SNP 186358 186358 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 186596 186596 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 203817 203817 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1235 SAMTools SNP 212240 212240 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1235 SAMTools SNP 222410 222410 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1235 SAMTools SNP 222416 222416 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1235 SAMTools SNP 223161 223161 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1235 SAMTools SNP 223471 223471 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D35%3BFQ%3D-4.79%3BPV4%3D0.25%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C24:27 scaffold1235 SAMTools SNP 226303 226303 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.17%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1235 SAMTools SNP 228337 228337 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1235 SAMTools SNP 228937 228937 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1235 SAMTools SNP 228964 228964 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.47%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C223:66 scaffold1235 SAMTools SNP 229066 229066 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.16%2C6.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1235 SAMTools SNP 229162 229162 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.48%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1235 SAMTools SNP 229210 229210 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C39%2C0:75 scaffold1235 SAMTools SNP 230693 230693 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1235 SAMTools SNP 237039 237039 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1235 SAMTools SNP 237042 237042 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 237568 237568 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.23%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 237589 237589 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 237598 237598 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C183:99 scaffold1235 SAMTools SNP 237618 237618 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1235 SAMTools SNP 237619 237619 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1235 SAMTools SNP 239180 239180 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1235 SAMTools SNP 239228 239228 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.27%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C118:99 scaffold1235 SAMTools SNP 239267 239267 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1235 SAMTools SNP 239270 239270 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.4%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C18:21 scaffold1235 SAMTools SNP 239635 239635 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C241:76 scaffold1235 SAMTools SNP 239678 239678 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1235 SAMTools SNP 239725 239725 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold1235 SAMTools SNP 240310 240310 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1235 SAMTools SNP 240311 240311 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 240901 240901 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C226:99 scaffold1235 SAMTools SNP 241672 241672 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1235 SAMTools SNP 245214 245214 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1235 SAMTools SNP 245262 245262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 245911 245911 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1235 SAMTools SNP 246373 246373 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1235 SAMTools SNP 252147 252147 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1235 SAMTools SNP 254024 254024 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C13%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C5.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1235 SAMTools SNP 254078 254078 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.046%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1235 SAMTools SNP 254126 254126 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 257646 257646 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 257685 257685 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C29%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1235 SAMTools SNP 259317 259317 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D48%3BFQ%3D66%3BPV4%3D1%2C0.28%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C239:96 scaffold1235 SAMTools SNP 259388 259388 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1235 SAMTools SNP 259394 259394 93.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C15%2C0:27 scaffold1235 SAMTools SNP 260686 260686 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1235 SAMTools SNP 260811 260811 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1235 SAMTools SNP 260829 260829 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C171:99 scaffold1235 SAMTools SNP 261139 261139 173 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1235 SAMTools SNP 261169 261169 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.37%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1235 SAMTools SNP 261827 261827 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1235 SAMTools SNP 261884 261884 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1235 SAMTools SNP 261944 261944 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1235 SAMTools SNP 263050 263050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1235 SAMTools SNP 263074 263074 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1235 SAMTools SNP 263085 263085 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold1235 SAMTools SNP 263241 263241 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C91%2C1%2C38%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1235 SAMTools SNP 263257 263257 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C90%2C9%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 263262 263262 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C14%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1235 SAMTools SNP 263883 263883 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C4%2C35%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.29%2C3e-16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1235 SAMTools SNP 283032 283032 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1235 SAMTools SNP 283299 283299 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C58%2C2%2C35%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.48%2C5.5e-33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1237 SAMTools SNP 1251 1251 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1237 SAMTools SNP 14014 14014 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1237 SAMTools SNP 18225 18225 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1237 SAMTools SNP 18584 18584 5.29 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C31%2C25%2C37%2C0%2C31:6 scaffold1237 SAMTools SNP 18651 18651 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C51%2C0:99 scaffold1237 SAMTools SNP 24516 24516 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0015%2C1.9e-14%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1237 SAMTools SNP 37803 37803 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C48%2C0:93 scaffold1237 SAMTools SNP 75827 75827 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 75864 75864 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 137846 137846 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1237 SAMTools SNP 138093 138093 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1237 SAMTools SNP 138099 138099 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C84:34 scaffold1237 SAMTools SNP 141590 141590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 141689 141689 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1237 SAMTools SNP 142732 142732 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1237 SAMTools SNP 142737 142737 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1237 SAMTools SNP 146308 146308 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C4%3BMQ%3D48%3BFQ%3D106%3BPV4%3D0.68%2C1.1e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1237 SAMTools SNP 146387 146387 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C8%3BMQ%3D43%3BFQ%3D38%3BPV4%3D0.27%2C7e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C65:68 scaffold1237 SAMTools SNP 196473 196473 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1237 SAMTools SNP 196676 196676 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1237 SAMTools SNP 196696 196696 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 196708 196708 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1237 SAMTools SNP 196821 196821 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C51%2C0:86 scaffold1237 SAMTools SNP 197623 197623 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C17%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C122:99 scaffold1237 SAMTools SNP 197642 197642 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.15%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1237 SAMTools SNP 197674 197674 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1237 SAMTools SNP 197696 197696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1237 SAMTools SNP 197722 197722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C6.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1237 SAMTools SNP 197948 197948 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1237 SAMTools SNP 248061 248061 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1237 SAMTools SNP 255375 255375 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1237 SAMTools SNP 255877 255877 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1237 SAMTools SNP 255958 255958 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 255972 255972 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 262519 262519 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C15%2C0:27 scaffold1237 SAMTools SNP 263019 263019 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1237 SAMTools SNP 268543 268543 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 278895 278895 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1237 SAMTools SNP 292685 292685 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1237 SAMTools SNP 293179 293179 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.017%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C123:34 scaffold1237 SAMTools SNP 299148 299148 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1237 SAMTools SNP 299164 299164 3.02 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C30%2C27%2C30%2C0%2C27:4 scaffold1237 SAMTools SNP 299757 299757 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1237 SAMTools SNP 301711 301711 5.05 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5553%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C7:12 scaffold1237 SAMTools SNP 302316 302316 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1237 SAMTools SNP 302365 302365 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.1e-09%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C225:42 scaffold1237 SAMTools SNP 302702 302702 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C10%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.8e-49%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1237 SAMTools SNP 303223 303223 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C57%2C0:99 scaffold1237 SAMTools SNP 303669 303669 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1237 SAMTools SNP 304922 304922 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.11%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1237 SAMTools SNP 305252 305252 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1237 SAMTools SNP 305253 305253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1237 SAMTools SNP 305293 305293 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1237 SAMTools SNP 308089 308089 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold1237 SAMTools SNP 308098 308098 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.59%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1237 SAMTools SNP 311787 311787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C2%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1237 SAMTools SNP 312074 312074 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1237 SAMTools SNP 312173 312173 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C3.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1237 SAMTools SNP 313709 313709 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1237 SAMTools SNP 313800 313800 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1237 SAMTools SNP 315210 315210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.029%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1237 SAMTools SNP 318109 318109 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1237 SAMTools SNP 318481 318481 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1237 SAMTools SNP 319046 319046 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1241 SAMTools SNP 369 369 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1241 SAMTools SNP 2284 2284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.058%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 3068 3068 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.019%2C4.1e-16%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1241 SAMTools SNP 3080 3080 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.0096%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1241 SAMTools SNP 3143 3143 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.14%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1241 SAMTools SNP 3559 3559 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1241 SAMTools SNP 3574 3574 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.62%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C232:99 scaffold1241 SAMTools SNP 3667 3667 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.67%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1241 SAMTools SNP 3733 3733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1241 SAMTools SNP 3781 3781 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1241 SAMTools SNP 3823 3823 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1241 SAMTools SNP 4570 4570 201 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C39%2C0:75 scaffold1241 SAMTools SNP 4587 4587 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1241 SAMTools SNP 4986 4986 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C81%2C0:99 scaffold1241 SAMTools SNP 5092 5092 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C26%2C26%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0016%2C1.3e-24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1241 SAMTools SNP 5400 5400 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1241 SAMTools SNP 5484 5484 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.042%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C128:37 scaffold1241 SAMTools SNP 8849 8849 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1241 SAMTools SNP 8893 8893 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1241 SAMTools SNP 10815 10815 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C0.018%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1241 SAMTools SNP 10821 10821 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.13%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1241 SAMTools SNP 10881 10881 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.62%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1241 SAMTools SNP 11114 11114 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D9.3e-05%2C1%2C1%2C3.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1241 SAMTools SNP 12581 12581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C49%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1241 SAMTools SNP 12596 12596 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C44%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1241 SAMTools SNP 12849 12849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1241 SAMTools SNP 12984 12984 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.00074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1241 SAMTools SNP 13030 13030 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C54%2C0:99 scaffold1241 SAMTools SNP 14073 14073 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1241 SAMTools SNP 15625 15625 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1241 SAMTools SNP 16062 16062 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C11%2C45%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.015%2C2.2e-42%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C204:99 scaffold1241 SAMTools SNP 16212 16212 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C48%2C0:93 scaffold1241 SAMTools SNP 16964 16964 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C3.7e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C112:73 scaffold1241 SAMTools SNP 17187 17187 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1241 SAMTools SNP 17690 17690 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C35%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold1241 SAMTools SNP 21399 21399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1241 SAMTools SNP 21414 21414 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1241 SAMTools SNP 21756 21756 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1241 SAMTools SNP 22503 22503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C52%2C19%3BMQ%3D50%3BFQ%3D-194%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C0:99 scaffold1241 SAMTools SNP 24574 24574 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C169%2C1%2C90%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.00013%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1241 SAMTools SNP 24586 24586 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C154%2C5%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 24610 24610 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C121%2C64%2C143%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-09%2C0.00039%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 24915 24915 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 25561 25561 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C67%2C45%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 25573 25573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C67%2C45%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C0.0031%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 25726 25726 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1241 SAMTools SNP 25783 25783 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0047%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C219:99 scaffold1241 SAMTools SNP 25807 25807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1241 SAMTools SNP 26474 26474 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.029%2C0.00088%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1241 SAMTools SNP 26796 26796 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold1241 SAMTools SNP 35555 35555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1241 SAMTools SNP 35799 35799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1241 SAMTools SNP 35867 35867 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 35876 35876 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1241 SAMTools SNP 36270 36270 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1241 SAMTools SNP 36778 36778 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1241 SAMTools SNP 36820 36820 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1241 SAMTools SNP 42770 42770 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1241 SAMTools SNP 43833 43833 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D10.5%3BPV4%3D1%2C0.023%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold1241 SAMTools SNP 50206 50206 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1241 SAMTools SNP 50236 50236 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1241 SAMTools SNP 50617 50617 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 50980 50980 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1241 SAMTools SNP 53162 53162 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1241 SAMTools SNP 53210 53210 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 53420 53420 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 53747 53747 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 53750 53750 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 55347 55347 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 55392 55392 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 61704 61704 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1241 SAMTools SNP 63502 63502 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.1e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1241 SAMTools SNP 64827 64827 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1241 SAMTools SNP 65011 65011 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C60%2C0:99 scaffold1241 SAMTools SNP 65067 65067 7.04 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D-47%3BPV4%3D1%2C3.3e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C20%2C0:23 scaffold1241 SAMTools SNP 66305 66305 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 67826 67826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 80786 80786 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.005%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1241 SAMTools SNP 80958 80958 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1241 SAMTools SNP 80972 80972 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.14%2C7.8e-08%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1241 SAMTools SNP 82031 82031 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.34%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1241 SAMTools SNP 82815 82815 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C222:99 scaffold1241 SAMTools SNP 82869 82869 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.067%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1241 SAMTools SNP 82983 82983 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C9%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.02%2C7.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C202:99 scaffold1241 SAMTools SNP 83028 83028 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1241 SAMTools SNP 83046 83046 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.083%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1241 SAMTools SNP 83097 83097 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.066%2C0.026%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1241 SAMTools SNP 84058 84058 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1241 SAMTools SNP 84303 84303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C43%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.35%2C0.086%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1241 SAMTools SNP 84351 84351 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 84385 84385 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C40%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C146:99 scaffold1241 SAMTools SNP 86553 86553 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C97%2C15%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1.6e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 86768 86768 32.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1241 SAMTools SNP 102394 102394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 102841 102841 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C26:29 scaffold1241 SAMTools SNP 111046 111046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C102%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1241 SAMTools SNP 119781 119781 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1241 SAMTools SNP 128004 128004 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C80%2C31%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.014%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 128201 128201 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.28%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1241 SAMTools SNP 128202 128202 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1241 SAMTools SNP 128439 128439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1241 SAMTools SNP 129790 129790 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C32%2C12%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.075%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1241 SAMTools SNP 130108 130108 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C30%2C54%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D9.4e-07%2C1%2C1%2C5.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1241 SAMTools SNP 130330 130330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C91%2C9%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C7.4e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 154328 154328 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1241 SAMTools SNP 230418 230418 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1241 SAMTools SNP 230990 230990 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold1241 SAMTools SNP 230999 230999 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1241 SAMTools SNP 231001 231001 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.009%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1241 SAMTools SNP 231032 231032 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C228:99 scaffold1241 SAMTools SNP 231464 231464 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.22%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C235:71 scaffold1241 SAMTools SNP 231545 231545 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1241 SAMTools SNP 231593 231593 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1241 SAMTools SNP 231595 231595 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.2%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1241 SAMTools SNP 231731 231731 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold1241 SAMTools SNP 231872 231872 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1241 SAMTools SNP 231874 231874 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1241 SAMTools SNP 232197 232197 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1241 SAMTools SNP 232492 232492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1241 SAMTools SNP 232531 232531 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C42%2C13%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.18%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold1241 SAMTools SNP 232870 232870 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.18%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1241 SAMTools SNP 232903 232903 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C28%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1241 SAMTools SNP 232957 232957 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 233445 233445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 233448 233448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 233884 233884 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 233911 233911 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.012%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1241 SAMTools SNP 233932 233932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1241 SAMTools SNP 233992 233992 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1241 SAMTools SNP 234016 234016 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1241 SAMTools SNP 234928 234928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1241 SAMTools SNP 234931 234931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1241 SAMTools SNP 235373 235373 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C242:99 scaffold1241 SAMTools SNP 235379 235379 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 235900 235900 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.54%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1241 SAMTools SNP 236316 236316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1241 SAMTools SNP 236331 236331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1241 SAMTools SNP 236367 236367 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1241 SAMTools SNP 236421 236421 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1241 SAMTools SNP 236988 236988 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1241 SAMTools SNP 237015 237015 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.0026%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1241 SAMTools SNP 237646 237646 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.00071%2C0.098%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1241 SAMTools SNP 238493 238493 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.63%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1241 SAMTools SNP 239487 239487 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.12%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1241 SAMTools SNP 239505 239505 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C11%2C13%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.13%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold1241 SAMTools SNP 239733 239733 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.16%2C1.3e-07%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1241 SAMTools SNP 240101 240101 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C17%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 240110 240110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C44%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 240122 240122 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C17%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0004%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 240640 240640 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.033%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1241 SAMTools SNP 241215 241215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1241 SAMTools SNP 241263 241263 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1241 SAMTools SNP 241938 241938 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1241 SAMTools SNP 241941 241941 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1241 SAMTools SNP 241967 241967 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1241 SAMTools SNP 241977 241977 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1241 SAMTools SNP 242336 242336 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 242342 242342 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1241 SAMTools SNP 242654 242654 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C21%2C0:39 scaffold1241 SAMTools SNP 242750 242750 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C2%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1241 SAMTools SNP 257605 257605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C30%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 258053 258053 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1241 SAMTools SNP 258480 258480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1241 SAMTools SNP 258564 258564 193 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C26%2C2%2C212%2C0%2C209:45 scaffold1241 SAMTools SNP 259026 259026 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 259065 259065 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.55%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1241 SAMTools SNP 259644 259644 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1241 SAMTools SNP 259659 259659 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1241 SAMTools SNP 261117 261117 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.52%2C0.0074%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1241 SAMTools SNP 261132 261132 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1241 SAMTools SNP 261164 261164 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C229:99 scaffold1241 SAMTools SNP 261689 261689 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 261707 261707 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1241 SAMTools SNP 261716 261716 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1241 SAMTools SNP 261767 261767 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 261797 261797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1241 SAMTools SNP 264619 264619 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 264831 264831 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1241 SAMTools SNP 264852 264852 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1241 SAMTools SNP 265577 265577 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0081%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1241 SAMTools SNP 266242 266242 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.16%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 266809 266809 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.47%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1241 SAMTools SNP 266866 266866 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1241 SAMTools SNP 267593 267593 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1241 SAMTools SNP 267692 267692 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D4.2e-05%2C7.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1241 SAMTools SNP 271340 271340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.63%2C0.39%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1241 SAMTools SNP 271349 271349 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1241 SAMTools SNP 271364 271364 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.15%2C0.13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C186:99 scaffold1241 SAMTools SNP 271475 271475 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1241 SAMTools SNP 271572 271572 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold1241 SAMTools SNP 273384 273384 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 278476 278476 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C45%2C0:87 scaffold1241 SAMTools SNP 278494 278494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 278750 278750 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1241 SAMTools SNP 279226 279226 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.33%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1241 SAMTools SNP 279250 279250 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1241 SAMTools SNP 279384 279384 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.013%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1241 SAMTools SNP 279435 279435 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1241 SAMTools SNP 279483 279483 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold1241 SAMTools SNP 279769 279769 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1241 SAMTools SNP 280047 280047 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1241 SAMTools SNP 280071 280071 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1241 SAMTools SNP 280596 280596 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 280936 280936 220 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2%2C223%2C0%2C220:87 scaffold1241 SAMTools SNP 281044 281044 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-05%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 281055 281055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.38%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 282958 282958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 284145 284145 222 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0%2C252%2C46%2C249:99 scaffold1241 SAMTools SNP 287053 287053 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1241 SAMTools SNP 291032 291032 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1241 SAMTools SNP 291095 291095 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1241 SAMTools SNP 291981 291981 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1241 SAMTools SNP 292044 292044 85 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold1241 SAMTools SNP 292062 292062 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1241 SAMTools SNP 293305 293305 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1241 SAMTools SNP 293323 293323 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C186:65 scaffold1241 SAMTools SNP 295905 295905 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1241 SAMTools SNP 296302 296302 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1241 SAMTools SNP 326130 326130 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 326151 326151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 326178 326178 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 329108 329108 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1241 SAMTools SNP 329142 329142 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1241 SAMTools SNP 335138 335138 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1241 SAMTools SNP 335202 335202 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1241 SAMTools SNP 335337 335337 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1241 SAMTools SNP 335350 335350 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C77:80 scaffold1241 SAMTools SNP 335353 335353 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C156:77 scaffold1241 SAMTools SNP 336637 336637 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1241 SAMTools SNP 336676 336676 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 336850 336850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 337033 337033 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 337066 337066 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1241 SAMTools SNP 337089 337089 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1241 SAMTools SNP 337427 337427 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1241 SAMTools SNP 337530 337530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1241 SAMTools SNP 337589 337589 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.13%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1241 SAMTools SNP 339680 339680 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1241 SAMTools SNP 339688 339688 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1241 SAMTools SNP 339713 339713 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C155:99 scaffold1241 SAMTools SNP 353202 353202 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C18%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.00012%2C4e-09%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C198:97 scaffold1241 SAMTools SNP 353245 353245 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.051%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C233:53 scaffold1241 SAMTools SNP 355219 355219 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold1241 SAMTools SNP 355949 355949 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.13%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C199:99 scaffold1241 SAMTools SNP 356080 356080 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1241 SAMTools SNP 357124 357124 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C207:99 scaffold1241 SAMTools SNP 358517 358517 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1241 SAMTools SNP 358544 358544 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1241 SAMTools SNP 358580 358580 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1241 SAMTools SNP 359537 359537 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1241 SAMTools SNP 359588 359588 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1241 SAMTools SNP 359630 359630 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1241 SAMTools SNP 361175 361175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1241 SAMTools SNP 361227 361227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1241 SAMTools SNP 365412 365412 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1241 SAMTools SNP 365426 365426 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1241 SAMTools SNP 365472 365472 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1241 SAMTools SNP 365499 365499 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1241 SAMTools SNP 367348 367348 4.11 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1241 SAMTools SNP 368550 368550 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1241 SAMTools SNP 372478 372478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 373183 373183 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C45%2C0:87 scaffold1241 SAMTools SNP 376692 376692 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.56%2C1e-12%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C247:99 scaffold1241 SAMTools SNP 376909 376909 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.5%2C4.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1241 SAMTools SNP 377007 377007 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C15%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1241 SAMTools SNP 377171 377171 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1241 SAMTools SNP 382334 382334 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1241 SAMTools SNP 396711 396711 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C195:99 scaffold1241 SAMTools SNP 397007 397007 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 398497 398497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C53%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1241 SAMTools SNP 398509 398509 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C0%2C20%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.33%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1241 SAMTools SNP 399750 399750 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.063%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1241 SAMTools SNP 400788 400788 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 402267 402267 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1241 SAMTools SNP 402315 402315 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1241 SAMTools SNP 402897 402897 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1241 SAMTools SNP 402951 402951 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1241 SAMTools SNP 403103 403103 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.072%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1241 SAMTools SNP 404185 404185 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.52%2C0.00025%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1241 SAMTools SNP 404197 404197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1241 SAMTools SNP 404470 404470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C6%2C43%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 404602 404602 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C74%2C65%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C8e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 405226 405226 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C62%2C207%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 405303 405303 112 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C163%2C0%2C137%2C136%2C134:99 scaffold1241 SAMTools SNP 421805 421805 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C3%2C48%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.26%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1241 SAMTools SNP 423193 423193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1241 SAMTools SNP 423272 423272 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C26%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1.4e-05%2C9.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1241 SAMTools SNP 423305 423305 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1241 SAMTools SNP 423764 423764 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 423989 423989 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 424423 424423 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.71%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1241 SAMTools SNP 424429 424429 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.71%2C3.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1241 SAMTools SNP 424924 424924 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0069%2C0.26%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1241 SAMTools SNP 425694 425694 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 426596 426596 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1241 SAMTools SNP 427112 427112 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1241 SAMTools SNP 429090 429090 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C43%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.063%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1241 SAMTools SNP 429458 429458 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1241 SAMTools SNP 429481 429481 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 433296 433296 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1241 SAMTools SNP 433413 433413 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C51%2C0:74 scaffold1241 SAMTools SNP 433474 433474 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C69%2C0:99 scaffold1241 SAMTools SNP 435333 435333 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1e-21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C232:50 scaffold1241 SAMTools SNP 435855 435855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1241 SAMTools SNP 436091 436091 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1241 SAMTools SNP 437364 437364 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1241 SAMTools SNP 437484 437484 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1241 SAMTools SNP 437550 437550 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1241 SAMTools SNP 437556 437556 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C245:96 scaffold1241 SAMTools SNP 437916 437916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 438262 438262 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1241 SAMTools SNP 438292 438292 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C2%2C18%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.16%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1241 SAMTools SNP 438298 438298 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C26%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.18%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1241 SAMTools SNP 438361 438361 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1241 SAMTools SNP 438909 438909 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1241 SAMTools SNP 439300 439300 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.3%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1241 SAMTools SNP 439304 439304 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.27%2C0.016%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C201:76 scaffold1241 SAMTools SNP 439327 439327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1241 SAMTools SNP 439385 439385 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C12%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C9.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C48:51 scaffold1241 SAMTools SNP 439481 439481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1241 SAMTools SNP 440662 440662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1241 SAMTools SNP 440736 440736 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0166%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C2e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C110:37 scaffold1241 SAMTools SNP 440797 440797 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.074%2C9.7e-11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C228:49 scaffold1241 SAMTools SNP 440854 440854 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1241 SAMTools SNP 440893 440893 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.21%2C6.3e-45%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1241 SAMTools SNP 442003 442003 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C178:99 scaffold1241 SAMTools SNP 446286 446286 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1241 SAMTools SNP 446440 446440 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1241 SAMTools SNP 452943 452943 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1241 SAMTools SNP 460303 460303 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1241 SAMTools SNP 461973 461973 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 583 583 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold1244 SAMTools SNP 697 697 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D17%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C63:47 scaffold1244 SAMTools SNP 1468 1468 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D47%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C117%2C0:99 scaffold1244 SAMTools SNP 1499 1499 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C3.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C20:23 scaffold1244 SAMTools SNP 2026 2026 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.011%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1244 SAMTools SNP 19204 19204 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1244 SAMTools SNP 19434 19434 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C34%2C51%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 25576 25576 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C2%2C15%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1244 SAMTools SNP 28377 28377 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 32688 32688 6.95 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C20%2C11%2C35%2C0%2C32:10 scaffold1244 SAMTools SNP 32949 32949 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.23%2C9.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1244 SAMTools SNP 48643 48643 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1244 SAMTools SNP 48652 48652 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1244 SAMTools SNP 55046 55046 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1244 SAMTools SNP 55072 55072 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1244 SAMTools SNP 62526 62526 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C63:31 scaffold1244 SAMTools SNP 63522 63522 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1244 SAMTools SNP 64341 64341 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 82013 82013 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1244 SAMTools SNP 82075 82075 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.033%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1244 SAMTools SNP 89164 89164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1244 SAMTools SNP 89401 89401 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1244 SAMTools SNP 89833 89833 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 89971 89971 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1244 SAMTools SNP 90059 90059 18.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold1244 SAMTools SNP 90487 90487 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1244 SAMTools SNP 93182 93182 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1244 SAMTools SNP 94576 94576 32.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1244 SAMTools SNP 95168 95168 69.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold1244 SAMTools SNP 95182 95182 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold1244 SAMTools SNP 111797 111797 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1244 SAMTools SNP 112568 112568 13.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1244 SAMTools SNP 112701 112701 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 129974 129974 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 130026 130026 92.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1244 SAMTools SNP 132816 132816 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C6%2C0%3BMQ%3D41%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1244 SAMTools SNP 132840 132840 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D43%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C211:99 scaffold1244 SAMTools SNP 132918 132918 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D39%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C39%2C0:75 scaffold1244 SAMTools SNP 132943 132943 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C15%3BMQ%3D44%3BFQ%3D192%3BPV4%3D0.47%2C0.33%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C234:99 scaffold1244 SAMTools SNP 134118 134118 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 153838 153838 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1244 SAMTools SNP 160360 160360 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1244 SAMTools SNP 160362 160362 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1244 SAMTools SNP 160672 160672 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D38%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C38:41 scaffold1244 SAMTools SNP 164186 164186 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.08%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C197:69 scaffold1244 SAMTools SNP 164335 164335 46.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold1244 SAMTools SNP 180072 180072 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1244 SAMTools SNP 187315 187315 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D164%3BPV4%3D1%2C0.079%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C213:99 scaffold1244 SAMTools SNP 187360 187360 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C31%2C0%3BMQ%3D49%3BFQ%3D199%3BPV4%3D1%2C0.2%2C0.22%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C226:99 scaffold1244 SAMTools SNP 189477 189477 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D48%3BFQ%3D73%3BPV4%3D1%2C0.35%2C0.1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C219:99 scaffold1244 SAMTools SNP 189548 189548 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C7%3BMQ%3D46%3BFQ%3D155%3BPV4%3D1%2C0.27%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C6%2C255:99 scaffold1244 SAMTools SNP 189743 189743 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.05%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1244 SAMTools SNP 189797 189797 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1244 SAMTools SNP 189803 189803 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1244 SAMTools SNP 189824 189824 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0330%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1244 SAMTools SNP 191371 191371 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1244 SAMTools SNP 191380 191380 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1244 SAMTools SNP 193080 193080 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.058%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1244 SAMTools SNP 193083 193083 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.26%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1244 SAMTools SNP 202682 202682 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1244 SAMTools SNP 202899 202899 6.17 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1244 SAMTools SNP 205037 205037 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.4%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 205077 205077 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1244 SAMTools SNP 205080 205080 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 205775 205775 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 211686 211686 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1244 SAMTools SNP 211692 211692 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 229673 229673 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1244 SAMTools SNP 240749 240749 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 241917 241917 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1244 SAMTools SNP 244882 244882 11.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold1244 SAMTools SNP 244996 244996 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 245004 245004 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 248232 248232 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1244 SAMTools SNP 249074 249074 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1244 SAMTools SNP 249089 249089 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 249268 249268 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 258931 258931 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C36%2C0:69 scaffold1244 SAMTools SNP 259503 259503 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C74:31 scaffold1244 SAMTools SNP 326189 326189 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 327563 327563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 328077 328077 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 382026 382026 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1244 SAMTools SNP 445856 445856 30.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1244 SAMTools SNP 446083 446083 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C117%2C0:99 scaffold1244 SAMTools SNP 446998 446998 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1244 SAMTools SNP 447157 447157 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C63%2C0:99 scaffold1244 SAMTools SNP 447186 447186 138 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C75%2C0:99 scaffold1244 SAMTools SNP 447441 447441 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold1244 SAMTools SNP 447465 447465 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1244 SAMTools SNP 447998 447998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C20%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1244 SAMTools SNP 448560 448560 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C206:99 scaffold1244 SAMTools SNP 474612 474612 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C246:99 scaffold1244 SAMTools SNP 475335 475335 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C82:82 scaffold1244 SAMTools SNP 475339 475339 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C40:43 scaffold1244 SAMTools SNP 475348 475348 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 477288 477288 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1244 SAMTools SNP 478496 478496 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1244 SAMTools SNP 478564 478564 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1244 SAMTools SNP 479237 479237 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1244 SAMTools SNP 479257 479257 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1244 SAMTools SNP 479786 479786 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1244 SAMTools SNP 480085 480085 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1244 SAMTools SNP 480471 480471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 487855 487855 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1244 SAMTools SNP 487867 487867 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1244 SAMTools SNP 488056 488056 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold1244 SAMTools SNP 488137 488137 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1244 SAMTools SNP 488275 488275 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 488601 488601 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 488841 488841 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1244 SAMTools SNP 489837 489837 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1244 SAMTools SNP 489926 489926 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1244 SAMTools SNP 490256 490256 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1244 SAMTools SNP 490420 490420 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1244 SAMTools SNP 490424 490424 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1244 SAMTools SNP 490860 490860 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1244 SAMTools SNP 491054 491054 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.5e-13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C200:50 scaffold1244 SAMTools SNP 491578 491578 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1244 SAMTools SNP 491585 491585 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1244 SAMTools SNP 491948 491948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C62%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1244 SAMTools SNP 492201 492201 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 495973 495973 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1244 SAMTools SNP 496972 496972 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C6%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.038%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1244 SAMTools SNP 497368 497368 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C10%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1.7e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 497371 497371 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 497667 497667 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1244 SAMTools SNP 498734 498734 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1244 SAMTools SNP 498754 498754 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.39%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1244 SAMTools SNP 498891 498891 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.2e-16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C242:36 scaffold1244 SAMTools SNP 502969 502969 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1244 SAMTools SNP 503629 503629 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 516932 516932 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 517959 517959 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1244 SAMTools SNP 526658 526658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 535526 535526 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 551473 551473 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1244 SAMTools SNP 552289 552289 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 552859 552859 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C30%2C0:57 scaffold1244 SAMTools SNP 553727 553727 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1244 SAMTools SNP 553748 553748 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 554080 554080 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 554207 554207 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1244 SAMTools SNP 554260 554260 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 554862 554862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1244 SAMTools SNP 554907 554907 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1244 SAMTools SNP 554937 554937 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1244 SAMTools SNP 554949 554949 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1244 SAMTools SNP 554953 554953 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D27%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1244 SAMTools SNP 555483 555483 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C19%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1244 SAMTools SNP 555510 555510 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1244 SAMTools SNP 557138 557138 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold1244 SAMTools SNP 557153 557153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1244 SAMTools SNP 557165 557165 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C243:99 scaffold1244 SAMTools SNP 558708 558708 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1244 SAMTools SNP 558714 558714 99.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1244 SAMTools SNP 558783 558783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1244 SAMTools SNP 559134 559134 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1244 SAMTools SNP 565368 565368 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1244 SAMTools SNP 576983 576983 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D45.3%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C77:75 scaffold1244 SAMTools SNP 576992 576992 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1244 SAMTools SNP 577001 577001 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1244 SAMTools SNP 577037 577037 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.041%2C0.23%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C254:99 scaffold1244 SAMTools SNP 577557 577557 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.29%2C7.2e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C160:48 scaffold1244 SAMTools SNP 579784 579784 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 579826 579826 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1244 SAMTools SNP 579934 579934 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D0.25%2C0.0011%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold1244 SAMTools SNP 579943 579943 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00023%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C35:38 scaffold1244 SAMTools SNP 580330 580330 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 580706 580706 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1244 SAMTools SNP 580708 580708 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1244 SAMTools SNP 580849 580849 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 580874 580874 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 580900 580900 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 583063 583063 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1244 SAMTools SNP 583424 583424 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1244 SAMTools SNP 583555 583555 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 583749 583749 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 584517 584517 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.47%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold1244 SAMTools SNP 584726 584726 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C238:99 scaffold1244 SAMTools SNP 584734 584734 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1244 SAMTools SNP 584745 584745 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1244 SAMTools SNP 584746 584746 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1244 SAMTools SNP 584791 584791 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold1244 SAMTools SNP 584863 584863 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1244 SAMTools SNP 585631 585631 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 588809 588809 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 591261 591261 6.17 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1244 SAMTools SNP 591852 591852 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1244 SAMTools SNP 591916 591916 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 592272 592272 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 592713 592713 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1244 SAMTools SNP 597574 597574 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 600317 600317 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 612144 612144 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1244 SAMTools SNP 612768 612768 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.2%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C88:53 scaffold1244 SAMTools SNP 615068 615068 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1244 SAMTools SNP 615132 615132 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 635248 635248 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1244 SAMTools SNP 635344 635344 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1244 SAMTools SNP 636649 636649 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold1244 SAMTools SNP 643762 643762 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1244 SAMTools SNP 654893 654893 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1244 SAMTools SNP 655021 655021 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C71:28 scaffold1245 SAMTools SNP 2005 2005 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 2041 2041 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1245 SAMTools SNP 2097 2097 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 2101 2101 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 4359 4359 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C9.4e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C221:61 scaffold1245 SAMTools SNP 5286 5286 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5e-13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C178:49 scaffold1245 SAMTools SNP 5307 5307 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C151:34 scaffold1245 SAMTools SNP 5487 5487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1245 SAMTools SNP 8835 8835 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.28%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1245 SAMTools SNP 8843 8843 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1245 SAMTools SNP 8855 8855 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C0.23%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1245 SAMTools SNP 23398 23398 24.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1245 SAMTools SNP 23530 23530 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D47%3BFQ%3D45%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C72:75 scaffold1245 SAMTools SNP 23589 23589 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1245 SAMTools SNP 28053 28053 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C0%3BMQ%3D47%3BFQ%3D107%3BPV4%3D0.3%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C134:99 scaffold1245 SAMTools SNP 28063 28063 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C2%3BMQ%3D41%3BFQ%3D110%3BPV4%3D0.18%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C137:99 scaffold1245 SAMTools SNP 28098 28098 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D41%3BFQ%3D87%3BPV4%3D0.52%2C0.37%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C155:99 scaffold1245 SAMTools SNP 28661 28661 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 28721 28721 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C25%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-05%2C0.095%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 29355 29355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C57%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-05%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 29391 29391 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C1%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.2%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1245 SAMTools SNP 29509 29509 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1245 SAMTools SNP 36901 36901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1245 SAMTools SNP 37090 37090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1245 SAMTools SNP 37226 37226 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1245 SAMTools SNP 37484 37484 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1245 SAMTools SNP 38585 38585 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1245 SAMTools SNP 38783 38783 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C0:75 scaffold1245 SAMTools SNP 38945 38945 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.099%2C6e-28%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C243:99 scaffold1245 SAMTools SNP 39007 39007 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C4.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1245 SAMTools SNP 46152 46152 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1245 SAMTools SNP 47724 47724 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C10%2C35%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 47742 47742 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1245 SAMTools SNP 47805 47805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1245 SAMTools SNP 48759 48759 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C64%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1245 SAMTools SNP 55616 55616 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.49%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1245 SAMTools SNP 56061 56061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1245 SAMTools SNP 56100 56100 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold1245 SAMTools SNP 56136 56136 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold1245 SAMTools SNP 56241 56241 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1245 SAMTools SNP 56389 56389 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1245 SAMTools SNP 56419 56419 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.0028%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C158:96 scaffold1245 SAMTools SNP 56434 56434 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1245 SAMTools SNP 56470 56470 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1245 SAMTools SNP 56551 56551 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1245 SAMTools SNP 57187 57187 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1245 SAMTools SNP 57280 57280 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1245 SAMTools SNP 57298 57298 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.39%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1245 SAMTools SNP 57741 57741 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00027%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1245 SAMTools SNP 58721 58721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.67%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1245 SAMTools SNP 60147 60147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.36%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 60201 60201 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 60918 60918 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1245 SAMTools SNP 60921 60921 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1245 SAMTools SNP 61166 61166 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1245 SAMTools SNP 61873 61873 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C9%2C115%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 70450 70450 37.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1245 SAMTools SNP 71935 71935 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C30%2C0:57 scaffold1245 SAMTools SNP 72099 72099 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.43%2C7.3e-22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1245 SAMTools SNP 72200 72200 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1245 SAMTools SNP 72541 72541 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1245 SAMTools SNP 72562 72562 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1245 SAMTools SNP 72571 72571 46.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1245 SAMTools SNP 72697 72697 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1245 SAMTools SNP 74155 74155 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C7%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.28%2C7.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1245 SAMTools SNP 74401 74401 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C108%2C0:99 scaffold1245 SAMTools SNP 74413 74413 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C81%2C0:99 scaffold1245 SAMTools SNP 74632 74632 54.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1245 SAMTools SNP 74971 74971 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1245 SAMTools SNP 74986 74986 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1245 SAMTools SNP 75004 75004 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1245 SAMTools SNP 75019 75019 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D31%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C38:41 scaffold1245 SAMTools SNP 78180 78180 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C9%3BMQ%3D15%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C132%2C0:99 scaffold1245 SAMTools SNP 78198 78198 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C14%2C3%3BMQ%3D29%3BFQ%3D27%3BPV4%3D0.72%2C1%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C214:57 scaffold1245 SAMTools SNP 78258 78258 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C4%2C8%3BMQ%3D36%3BFQ%3D78%3BPV4%3D0.34%2C1%2C0.19%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1245 SAMTools SNP 78276 78276 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D38%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1245 SAMTools SNP 78311 78311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C13%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 79483 79483 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.01%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1245 SAMTools SNP 79501 79501 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0026%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C237:99 scaffold1245 SAMTools SNP 79579 79579 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C242:99 scaffold1245 SAMTools SNP 80664 80664 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1245 SAMTools SNP 80736 80736 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1245 SAMTools SNP 82686 82686 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 82693 82693 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1245 SAMTools SNP 83025 83025 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1245 SAMTools SNP 83115 83115 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C24%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.37%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1245 SAMTools SNP 83124 83124 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C26%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1245 SAMTools SNP 83606 83606 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C45%2C0:87 scaffold1245 SAMTools SNP 83873 83873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1245 SAMTools SNP 83999 83999 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1245 SAMTools SNP 85037 85037 34.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1245 SAMTools SNP 86316 86316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C7%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1245 SAMTools SNP 86974 86974 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.5%2C0.071%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C247:63 scaffold1245 SAMTools SNP 87414 87414 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1245 SAMTools SNP 87638 87638 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1245 SAMTools SNP 87884 87884 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1245 SAMTools SNP 87902 87902 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.041%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 89132 89132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.002%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 89764 89764 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.35%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 89864 89864 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1245 SAMTools SNP 90023 90023 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1245 SAMTools SNP 90028 90028 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 91135 91135 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 91714 91714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1245 SAMTools SNP 91783 91783 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1245 SAMTools SNP 92097 92097 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C174:99 scaffold1245 SAMTools SNP 92100 92100 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C249:99 scaffold1245 SAMTools SNP 92517 92517 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold1245 SAMTools SNP 92596 92596 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1245 SAMTools SNP 93254 93254 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1245 SAMTools SNP 93449 93449 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1245 SAMTools SNP 99930 99930 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 99971 99971 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1245 SAMTools SNP 100161 100161 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1245 SAMTools SNP 107557 107557 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 109835 109835 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 133761 133761 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1245 SAMTools SNP 135206 135206 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1245 SAMTools SNP 135233 135233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 139891 139891 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 141588 141588 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1245 SAMTools SNP 141723 141723 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1245 SAMTools SNP 141898 141898 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1245 SAMTools SNP 142455 142455 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1245 SAMTools SNP 142575 142575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C152:99 scaffold1245 SAMTools SNP 143761 143761 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.13%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C252:99 scaffold1245 SAMTools SNP 143797 143797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 158162 158162 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 160644 160644 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1245 SAMTools SNP 160836 160836 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1245 SAMTools SNP 160859 160859 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1245 SAMTools SNP 165524 165524 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1245 SAMTools SNP 167469 167469 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 176013 176013 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 177002 177002 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 177025 177025 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1245 SAMTools SNP 221592 221592 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.18%2C0.14%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1245 SAMTools SNP 222212 222212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C47%2C0%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 222347 222347 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold1245 SAMTools SNP 222464 222464 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1245 SAMTools SNP 222972 222972 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1245 SAMTools SNP 223037 223037 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C18%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.55%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1245 SAMTools SNP 223043 223043 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.39%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 223052 223052 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C22%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 223467 223467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C11%2C57%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.021%2C1%2C2.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 223481 223481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1245 SAMTools SNP 223485 223485 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C71%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00019%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1245 SAMTools SNP 223491 223491 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C76%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1245 SAMTools SNP 223509 223509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C53%2C0%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 223981 223981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C78%2C29%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 224076 224076 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C37%2C95%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1245 SAMTools SNP 224092 224092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C263%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1245 SAMTools SNP 225833 225833 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C18%2C69%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 1491 1491 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 1519 1519 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1247 SAMTools SNP 1548 1548 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 7220 7220 9.97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1247 SAMTools SNP 7317 7317 43.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1247 SAMTools SNP 104112 104112 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 106071 106071 69.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1247 SAMTools SNP 107231 107231 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C20%2C6%3BMQ%3D48%3BFQ%3D186%3BPV4%3D0.07%2C0.42%2C0.09%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1247 SAMTools SNP 107312 107312 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C4%3BMQ%3D49%3BFQ%3D63%3BPV4%3D0.22%2C1%2C0.028%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C233:93 scaffold1247 SAMTools SNP 107830 107830 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D40%3BFQ%3D51%3BPV4%3D0.46%2C0.22%2C0.058%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C104:81 scaffold1247 SAMTools SNP 107833 107833 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D37%3BFQ%3D50%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C77:80 scaffold1247 SAMTools SNP 107860 107860 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D21%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C0:4 scaffold1247 SAMTools SNP 134072 134072 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold1247 SAMTools SNP 134109 134109 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C102%2C0:99 scaffold1247 SAMTools SNP 139196 139196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1247 SAMTools SNP 139301 139301 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1247 SAMTools SNP 139578 139578 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1247 SAMTools SNP 139580 139580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1247 SAMTools SNP 139705 139705 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C4%2C10%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.74%2C1.3e-17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1247 SAMTools SNP 139764 139764 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C16%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1.1e-25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C169:99 scaffold1247 SAMTools SNP 145035 145035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1247 SAMTools SNP 145409 145409 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C161%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1247 SAMTools SNP 146122 146122 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1247 SAMTools SNP 146123 146123 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C2%2C53%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.55%2C1%2C1%2C8.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1247 SAMTools SNP 147953 147953 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C292%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1247 SAMTools SNP 148106 148106 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1247 SAMTools SNP 148486 148486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C8%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1247 SAMTools SNP 149343 149343 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C4%2C16%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.73%2C3.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1247 SAMTools SNP 149830 149830 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 149834 149834 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 150223 150223 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C102:30 scaffold1247 SAMTools SNP 153401 153401 27.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1247 SAMTools SNP 154181 154181 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1247 SAMTools SNP 154202 154202 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1247 SAMTools SNP 155462 155462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1247 SAMTools SNP 158797 158797 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 158817 158817 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 159759 159759 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1247 SAMTools SNP 159817 159817 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold1247 SAMTools SNP 159922 159922 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C5.3e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C71:71 scaffold1247 SAMTools SNP 160304 160304 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1247 SAMTools SNP 160574 160574 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1247 SAMTools SNP 161441 161441 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1247 SAMTools SNP 162050 162050 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1247 SAMTools SNP 162872 162872 18.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold1247 SAMTools SNP 162913 162913 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C17%3BMQ%3D50%3BFQ%3D58.8%3BPV4%3D1%2C2.5e-17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C99:89 scaffold1247 SAMTools SNP 173113 173113 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold1247 SAMTools SNP 173741 173741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 173754 173754 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C9%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1247 SAMTools SNP 174566 174566 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C59%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C223%2C0:99 scaffold1247 SAMTools SNP 174830 174830 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C48%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 176607 176607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1247 SAMTools SNP 179649 179649 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1247 SAMTools SNP 179650 179650 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.003%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1247 SAMTools SNP 179673 179673 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C3.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C231:99 scaffold1247 SAMTools SNP 185374 185374 52.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1247 SAMTools SNP 190568 190568 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D28.9%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C71:59 scaffold1247 SAMTools SNP 203487 203487 50.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1247 SAMTools SNP 205461 205461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1247 SAMTools SNP 205485 205485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 205706 205706 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C9%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.39%2C0.29%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1247 SAMTools SNP 205805 205805 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1247 SAMTools SNP 208386 208386 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C39%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C181%2C0:99 scaffold1247 SAMTools SNP 208394 208394 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1247 SAMTools SNP 209383 209383 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1247 SAMTools SNP 210581 210581 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C42%2C0:81 scaffold1247 SAMTools SNP 213250 213250 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1247 SAMTools SNP 213617 213617 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1247 SAMTools SNP 213625 213625 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1247 SAMTools SNP 213973 213973 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 214157 214157 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 216933 216933 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1247 SAMTools SNP 217078 217078 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1249 SAMTools SNP 34624 34624 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 34625 34625 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C70:40 scaffold1249 SAMTools SNP 34757 34757 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D8.54%3BPV4%3D1%2C2.3e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C39:37 scaffold1249 SAMTools SNP 53234 53234 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold1249 SAMTools SNP 53619 53619 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1249 SAMTools SNP 54186 54186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1249 SAMTools SNP 54363 54363 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1249 SAMTools SNP 55233 55233 27.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1249 SAMTools SNP 55580 55580 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1249 SAMTools SNP 55849 55849 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C229:99 scaffold1249 SAMTools SNP 55862 55862 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1249 SAMTools SNP 56040 56040 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C7%2C71%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.017%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 56075 56075 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C73%2C5%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D8.7e-06%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C191:99 scaffold1249 SAMTools SNP 56094 56094 44.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1249 SAMTools SNP 56096 56096 38.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1249 SAMTools SNP 57604 57604 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C215:99 scaffold1249 SAMTools SNP 61627 61627 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1249 SAMTools SNP 61630 61630 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1249 SAMTools SNP 61699 61699 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C15%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.044%2C5.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1249 SAMTools SNP 61789 61789 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C0%2C18%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1.2e-06%2C1.4e-16%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1249 SAMTools SNP 61870 61870 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C57%2C0%2C12%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.58%2C1.9e-12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1249 SAMTools SNP 61906 61906 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C2%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.08%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1249 SAMTools SNP 63918 63918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1249 SAMTools SNP 64726 64726 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1249 SAMTools SNP 64735 64735 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1249 SAMTools SNP 66351 66351 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 66402 66402 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 66628 66628 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1249 SAMTools SNP 66694 66694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1249 SAMTools SNP 66934 66934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1249 SAMTools SNP 67997 67997 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.22%2C0.11%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1249 SAMTools SNP 70348 70348 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1249 SAMTools SNP 71032 71032 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C200:99 scaffold1249 SAMTools SNP 71110 71110 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.053%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1249 SAMTools SNP 71131 71131 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C13%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1249 SAMTools SNP 71361 71361 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.24%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 71384 71384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 71418 71418 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1249 SAMTools SNP 71462 71462 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.35%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1249 SAMTools SNP 71627 71627 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1249 SAMTools SNP 71636 71636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C13%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.11%2C6.2e-05%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1249 SAMTools SNP 71681 71681 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C0.00093%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1249 SAMTools SNP 72060 72060 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold1249 SAMTools SNP 72303 72303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.026%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1249 SAMTools SNP 72312 72312 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.024%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1249 SAMTools SNP 73865 73865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C7%2C31%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.26%2C0.12%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1249 SAMTools SNP 73875 73875 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C43%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 73883 73883 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C30%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1.6e-09%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 74188 74188 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C35%2C6%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-07%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 74265 74265 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C15%2C0%2C22%3BMQ%3D50%3BFQ%3D56%3BPV4%3D3.5e-10%2C1.2e-14%2C1%2C8.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1249 SAMTools SNP 74713 74713 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 74985 74985 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 74994 74994 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 75033 75033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C40%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1249 SAMTools SNP 75051 75051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C45%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1249 SAMTools SNP 75658 75658 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C25%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1.4e-08%2C0.062%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1249 SAMTools SNP 75659 75659 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C25%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D4.3e-08%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C182:99 scaffold1249 SAMTools SNP 75697 75697 116 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C16%2C4%2C143%2C0%2C140:21 scaffold1249 SAMTools SNP 76053 76053 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1249 SAMTools SNP 76056 76056 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 76074 76074 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.12%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1249 SAMTools SNP 76110 76110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1249 SAMTools SNP 76419 76419 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C35%2C16%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.00033%2C0.0001%2C1%2C7.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1249 SAMTools SNP 76425 76425 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 76470 76470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C211%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.1e-20%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 77840 77840 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1249 SAMTools SNP 79326 79326 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1249 SAMTools SNP 79356 79356 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1249 SAMTools SNP 79834 79834 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 79864 79864 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 80364 80364 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1249 SAMTools SNP 80489 80489 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1249 SAMTools SNP 80732 80732 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1249 SAMTools SNP 80825 80825 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1249 SAMTools SNP 81327 81327 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.36%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C20:23 scaffold1249 SAMTools SNP 81641 81641 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 88591 88591 58.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1249 SAMTools SNP 92940 92940 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 93125 93125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 97646 97646 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C30%2C0:57 scaffold1249 SAMTools SNP 97749 97749 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C93%2C0:99 scaffold1249 SAMTools SNP 97812 97812 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C25%2C139%2C20%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.33%2C2.6e-266%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1249 SAMTools SNP 98572 98572 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 98662 98662 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C78%2C0:99 scaffold1249 SAMTools SNP 98704 98704 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 99558 99558 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C2%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-07%2C1%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 101778 101778 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C138%2C0:99 scaffold1249 SAMTools SNP 102010 102010 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C38%2C29%2C36%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.076%2C5.9e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1249 SAMTools SNP 102519 102519 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 102763 102763 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C24%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1249 SAMTools SNP 103105 103105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 103659 103659 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1249 SAMTools SNP 103675 103675 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1249 SAMTools SNP 106055 106055 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1249 SAMTools SNP 108246 108246 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1249 SAMTools SNP 108282 108282 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 112797 112797 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1249 SAMTools SNP 112801 112801 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C129:70 scaffold1249 SAMTools SNP 113175 113175 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1249 SAMTools SNP 113193 113193 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold1249 SAMTools SNP 113487 113487 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1249 SAMTools SNP 114904 114904 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1249 SAMTools SNP 115409 115409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1249 SAMTools SNP 115424 115424 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.15%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 116944 116944 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1249 SAMTools SNP 116974 116974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1249 SAMTools SNP 117040 117040 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1249 SAMTools SNP 118086 118086 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1249 SAMTools SNP 118090 118090 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1249 SAMTools SNP 118567 118567 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 118636 118636 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C4%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.049%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1249 SAMTools SNP 118855 118855 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1249 SAMTools SNP 119383 119383 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 119620 119620 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1249 SAMTools SNP 119623 119623 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1249 SAMTools SNP 119868 119868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.098%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold1249 SAMTools SNP 120095 120095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C286%2C13%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0023%2C0.47%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 120143 120143 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C49%2C63%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 120737 120737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C309%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 124700 124700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1249 SAMTools SNP 124727 124727 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1249 SAMTools SNP 125543 125543 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1249 SAMTools SNP 130746 130746 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1249 SAMTools SNP 131471 131471 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0206%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1249 SAMTools SNP 131486 131486 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.38%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1249 SAMTools SNP 131972 131972 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold1249 SAMTools SNP 139141 139141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 205091 205091 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1249 SAMTools SNP 206026 206026 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1249 SAMTools SNP 206046 206046 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.46%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C251:59 scaffold1249 SAMTools SNP 206074 206074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1249 SAMTools SNP 207050 207050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1249 SAMTools SNP 207455 207455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 207840 207840 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 207846 207846 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 210765 210765 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1249 SAMTools SNP 211139 211139 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1249 SAMTools SNP 211166 211166 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1249 SAMTools SNP 211818 211818 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1249 SAMTools SNP 211829 211829 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1249 SAMTools SNP 211847 211847 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1249 SAMTools SNP 214460 214460 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 215115 215115 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1249 SAMTools SNP 215163 215163 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 215259 215259 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1249 SAMTools SNP 215570 215570 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1249 SAMTools SNP 215579 215579 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C141:74 scaffold1249 SAMTools SNP 215642 215642 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C73:76 scaffold1249 SAMTools SNP 215669 215669 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1249 SAMTools SNP 215682 215682 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1249 SAMTools SNP 215921 215921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.32%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1249 SAMTools SNP 215977 215977 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 218147 218147 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C51%2C0:99 scaffold1249 SAMTools SNP 269513 269513 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1249 SAMTools SNP 269523 269523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 273132 273132 44.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1249 SAMTools SNP 278330 278330 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C1%3BMQ%3D21%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C229%2C0:99 scaffold1249 SAMTools SNP 278585 278585 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C64%3BMQ%3D3%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C217%2C0:99 scaffold1249 SAMTools SNP 278973 278973 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C68%3BMQ%3D3%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C229%2C0:99 scaffold1249 SAMTools SNP 322383 322383 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 322613 322613 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1249 SAMTools SNP 326625 326625 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1249 SAMTools SNP 326742 326742 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1249 SAMTools SNP 328106 328106 5.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.8293%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D21%3BFQ%3D-26%3BPV4%3D1%2C0.012%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C1:6 scaffold1249 SAMTools SNP 329513 329513 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C5.2e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C138:59 scaffold1249 SAMTools SNP 344379 344379 30.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1249 SAMTools SNP 345416 345416 81.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold1249 SAMTools SNP 348661 348661 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1249 SAMTools SNP 348949 348949 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1249 SAMTools SNP 349604 349604 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 365892 365892 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1249 SAMTools SNP 368073 368073 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1249 SAMTools SNP 372166 372166 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0009%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C148:40 scaffold1249 SAMTools SNP 373238 373238 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.65%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1249 SAMTools SNP 373609 373609 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 378372 378372 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1249 SAMTools SNP 383480 383480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 383519 383519 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 387445 387445 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 387466 387466 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 388248 388248 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 388266 388266 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 388335 388335 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 388341 388341 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 388775 388775 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1249 SAMTools SNP 388809 388809 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 389936 389936 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1249 SAMTools SNP 390119 390119 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1249 SAMTools SNP 391851 391851 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1249 SAMTools SNP 397718 397718 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1249 SAMTools SNP 397784 397784 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 397785 397785 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 397832 397832 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0017%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C205:51 scaffold1249 SAMTools SNP 399822 399822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1249 SAMTools SNP 399840 399840 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1249 SAMTools SNP 400462 400462 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C7%3BMQ%3D49%3BFQ%3D11.3%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1249 SAMTools SNP 401126 401126 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1249 SAMTools SNP 401141 401141 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 401144 401144 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 402130 402130 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.11%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1249 SAMTools SNP 402208 402208 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1249 SAMTools SNP 402211 402211 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1249 SAMTools SNP 402582 402582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1249 SAMTools SNP 402601 402601 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1249 SAMTools SNP 402654 402654 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0031%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C88:30 scaffold1249 SAMTools SNP 402674 402674 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C75%2C0:99 scaffold1249 SAMTools SNP 403942 403942 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1249 SAMTools SNP 408877 408877 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C72%2C0:99 scaffold1249 SAMTools SNP 408979 408979 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1249 SAMTools SNP 409756 409756 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.067%2C1.6e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C74:50 scaffold1249 SAMTools SNP 410314 410314 28.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0%2C57%2C5%2C54:33 scaffold1249 SAMTools SNP 410710 410710 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1249 SAMTools SNP 410722 410722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 410952 410952 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.25%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 415443 415443 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 420539 420539 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 420590 420590 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 420600 420600 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1249 SAMTools SNP 420620 420620 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 420866 420866 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1249 SAMTools SNP 420896 420896 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 421612 421612 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1249 SAMTools SNP 421706 421706 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1249 SAMTools SNP 421864 421864 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.2%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1249 SAMTools SNP 433919 433919 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1249 SAMTools SNP 433934 433934 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 436155 436155 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 439624 439624 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C9%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.037%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C224:99 scaffold1249 SAMTools SNP 439627 439627 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.079%2C0.0015%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1249 SAMTools SNP 450658 450658 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 451555 451555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 451588 451588 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 452014 452014 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1249 SAMTools SNP 452113 452113 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.098%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1249 SAMTools SNP 452293 452293 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.17%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C97:99 scaffold1249 SAMTools SNP 452326 452326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1249 SAMTools SNP 452656 452656 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1249 SAMTools SNP 452697 452697 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.44%2C0.2%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C152:99 scaffold1249 SAMTools SNP 454575 454575 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1249 SAMTools SNP 455478 455478 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C0.064%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C119:99 scaffold1249 SAMTools SNP 455553 455553 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold1249 SAMTools SNP 455560 455560 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1249 SAMTools SNP 456403 456403 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.2%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold1249 SAMTools SNP 456612 456612 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C231:99 scaffold1249 SAMTools SNP 456651 456651 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1249 SAMTools SNP 456705 456705 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 457062 457062 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 457140 457140 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 457143 457143 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 457539 457539 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1249 SAMTools SNP 457739 457739 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0136%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.055%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C234:31 scaffold1249 SAMTools SNP 457961 457961 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 458349 458349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1249 SAMTools SNP 458400 458400 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C229:99 scaffold1249 SAMTools SNP 460782 460782 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.17%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C231:99 scaffold1249 SAMTools SNP 460794 460794 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.47%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1249 SAMTools SNP 461088 461088 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 461597 461597 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1249 SAMTools SNP 462445 462445 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 462571 462571 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1249 SAMTools SNP 462595 462595 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1249 SAMTools SNP 462613 462613 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1249 SAMTools SNP 463182 463182 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C63%2C0:99 scaffold1249 SAMTools SNP 463200 463200 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C66%2C0:99 scaffold1249 SAMTools SNP 463272 463272 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1249 SAMTools SNP 463284 463284 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1249 SAMTools SNP 463874 463874 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1249 SAMTools SNP 463892 463892 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1249 SAMTools SNP 464100 464100 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.21%2C1%2C4.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold1249 SAMTools SNP 464103 464103 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1249 SAMTools SNP 464130 464130 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1249 SAMTools SNP 464193 464193 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.66%2C1.3e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C215:88 scaffold1249 SAMTools SNP 465252 465252 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D0.016%2C0.28%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold1249 SAMTools SNP 465312 465312 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold1249 SAMTools SNP 465342 465342 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C235:99 scaffold1249 SAMTools SNP 465520 465520 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.24%2C0.001%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1249 SAMTools SNP 465838 465838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1249 SAMTools SNP 465898 465898 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 471626 471626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1249 SAMTools SNP 471653 471653 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1249 SAMTools SNP 471695 471695 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 471697 471697 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 471731 471731 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.07%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1249 SAMTools SNP 473148 473148 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1249 SAMTools SNP 473152 473152 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1249 SAMTools SNP 473181 473181 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1249 SAMTools SNP 473196 473196 36.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold1249 SAMTools SNP 473271 473271 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.037%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1249 SAMTools SNP 473286 473286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 473441 473441 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C9.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1249 SAMTools SNP 473466 473466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1249 SAMTools SNP 473770 473770 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1249 SAMTools SNP 475738 475738 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D8.6e-05%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1249 SAMTools SNP 475760 475760 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C237:99 scaffold1249 SAMTools SNP 476012 476012 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C30%2C0:57 scaffold1249 SAMTools SNP 481778 481778 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 481826 481826 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1249 SAMTools SNP 483339 483339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1249 SAMTools SNP 483347 483347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1249 SAMTools SNP 483544 483544 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold1249 SAMTools SNP 483565 483565 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1249 SAMTools SNP 485814 485814 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1249 SAMTools SNP 486125 486125 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.31%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1249 SAMTools SNP 486594 486594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 486627 486627 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1249 SAMTools SNP 487032 487032 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 487118 487118 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1249 SAMTools SNP 488972 488972 46.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1249 SAMTools SNP 489031 489031 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 489171 489171 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 493099 493099 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1249 SAMTools SNP 493115 493115 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1249 SAMTools SNP 493121 493121 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1249 SAMTools SNP 493609 493609 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1249 SAMTools SNP 493615 493615 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1249 SAMTools SNP 495487 495487 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 495505 495505 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 495553 495553 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1249 SAMTools SNP 495598 495598 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C217:99 scaffold1249 SAMTools SNP 497014 497014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1249 SAMTools SNP 497023 497023 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1249 SAMTools SNP 497424 497424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 524581 524581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 524721 524721 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1249 SAMTools SNP 524915 524915 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1249 SAMTools SNP 527890 527890 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1249 SAMTools SNP 528002 528002 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1249 SAMTools SNP 532123 532123 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 532156 532156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1249 SAMTools SNP 532660 532660 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C236:99 scaffold1249 SAMTools SNP 532748 532748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1249 SAMTools SNP 533099 533099 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.054%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1249 SAMTools SNP 533120 533120 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1249 SAMTools SNP 533693 533693 48.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C15%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C1.1e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C17%2C0:31 scaffold1249 SAMTools SNP 533822 533822 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1249 SAMTools SNP 534469 534469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1249 SAMTools SNP 534496 534496 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1249 SAMTools SNP 534571 534571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1249 SAMTools SNP 534583 534583 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1249 SAMTools SNP 536183 536183 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1249 SAMTools SNP 536345 536345 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 541223 541223 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C30:29 scaffold1249 SAMTools SNP 541960 541960 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00043%2C0.013%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold1249 SAMTools SNP 548099 548099 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.49%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C23:26 scaffold1249 SAMTools SNP 548399 548399 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D573%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D347%2C8%2C213%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 548414 548414 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D380%2C18%2C279%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C4.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 550735 550735 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1249 SAMTools SNP 551142 551142 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C38%2C33%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 551376 551376 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 553414 553414 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 558373 558373 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1249 SAMTools SNP 559550 559550 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 559586 559586 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 563379 563379 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1249 SAMTools SNP 563394 563394 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1249 SAMTools SNP 563553 563553 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C217:42 scaffold1249 SAMTools SNP 563585 563585 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1249 SAMTools SNP 564304 564304 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 564719 564719 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1249 SAMTools SNP 564721 564721 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1249 SAMTools SNP 570511 570511 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C0%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1249 SAMTools SNP 570541 570541 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 570542 570542 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 570559 570559 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1249 SAMTools SNP 571258 571258 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1249 SAMTools SNP 571269 571269 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1249 SAMTools SNP 572541 572541 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0:39 scaffold1250 SAMTools SNP 1020 1020 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1250 SAMTools SNP 1136 1136 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1250 SAMTools SNP 71403 71403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1250 SAMTools SNP 73361 73361 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1250 SAMTools SNP 80104 80104 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1250 SAMTools SNP 80709 80709 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1250 SAMTools SNP 82005 82005 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1251 SAMTools SNP 1724 1724 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1251 SAMTools SNP 1902 1902 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1251 SAMTools SNP 1925 1925 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1251 SAMTools SNP 1964 1964 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1251 SAMTools SNP 2225 2225 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1251 SAMTools SNP 21155 21155 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1251 SAMTools SNP 24128 24128 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1251 SAMTools SNP 24638 24638 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D0.33%2C0.00015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1251 SAMTools SNP 25681 25681 42.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1251 SAMTools SNP 25852 25852 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1251 SAMTools SNP 33865 33865 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C33%2C0:63 scaffold1251 SAMTools SNP 34029 34029 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C21%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C178%2C0:99 scaffold1251 SAMTools SNP 34257 34257 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1251 SAMTools SNP 34780 34780 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1251 SAMTools SNP 38308 38308 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.11%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold1251 SAMTools SNP 39004 39004 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C39:34 scaffold1251 SAMTools SNP 41043 41043 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1251 SAMTools SNP 42579 42579 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.0028%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C194:48 scaffold1251 SAMTools SNP 44688 44688 91.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold1251 SAMTools SNP 44886 44886 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1251 SAMTools SNP 44965 44965 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C36%2C0:69 scaffold1251 SAMTools SNP 45701 45701 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1251 SAMTools SNP 45808 45808 6.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1251 SAMTools SNP 45819 45819 84.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1251 SAMTools SNP 45863 45863 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1251 SAMTools SNP 46281 46281 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1251 SAMTools SNP 49234 49234 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1251 SAMTools SNP 49627 49627 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1251 SAMTools SNP 80439 80439 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 4311 4311 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1252 SAMTools SNP 4342 4342 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1252 SAMTools SNP 4345 4345 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1252 SAMTools SNP 5479 5479 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1252 SAMTools SNP 5482 5482 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1252 SAMTools SNP 5524 5524 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1252 SAMTools SNP 6398 6398 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1252 SAMTools SNP 7073 7073 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1252 SAMTools SNP 7142 7142 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold1252 SAMTools SNP 7146 7146 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1252 SAMTools SNP 8047 8047 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1252 SAMTools SNP 8653 8653 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C54:57 scaffold1252 SAMTools SNP 9044 9044 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1252 SAMTools SNP 9048 9048 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1252 SAMTools SNP 9063 9063 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1252 SAMTools SNP 9071 9071 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C145:99 scaffold1252 SAMTools SNP 9083 9083 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold1252 SAMTools SNP 9476 9476 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1252 SAMTools SNP 10609 10609 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C206:96 scaffold1252 SAMTools SNP 10618 10618 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1252 SAMTools SNP 11932 11932 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 38597 38597 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 38658 38658 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 71589 71589 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1252 SAMTools SNP 76613 76613 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1252 SAMTools SNP 76685 76685 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 81816 81816 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 81836 81836 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 81868 81868 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 85432 85432 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1252 SAMTools SNP 128844 128844 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 128845 128845 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 130831 130831 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1252 SAMTools SNP 130839 130839 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1252 SAMTools SNP 133376 133376 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1252 SAMTools SNP 135041 135041 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1252 SAMTools SNP 135054 135054 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1252 SAMTools SNP 136342 136342 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1252 SAMTools SNP 136457 136457 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1252 SAMTools SNP 136620 136620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 136748 136748 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1252 SAMTools SNP 137408 137408 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1252 SAMTools SNP 140106 140106 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1252 SAMTools SNP 141037 141037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 152299 152299 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 152704 152704 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1252 SAMTools SNP 156935 156935 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C187%2C1%2C97%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.67%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1252 SAMTools SNP 156956 156956 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1252 SAMTools SNP 156974 156974 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1252 SAMTools SNP 159396 159396 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 159420 159420 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 159453 159453 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 161736 161736 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1252 SAMTools SNP 163022 163022 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1252 SAMTools SNP 163132 163132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1252 SAMTools SNP 163144 163144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1252 SAMTools SNP 164068 164068 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1252 SAMTools SNP 164099 164099 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1252 SAMTools SNP 178744 178744 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1252 SAMTools SNP 261100 261100 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1252 SAMTools SNP 261125 261125 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1252 SAMTools SNP 261585 261585 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 261612 261612 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 261839 261839 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 261920 261920 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1252 SAMTools SNP 264929 264929 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1252 SAMTools SNP 264932 264932 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1252 SAMTools SNP 265511 265511 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1252 SAMTools SNP 265548 265548 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 265571 265571 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1252 SAMTools SNP 265981 265981 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1252 SAMTools SNP 267756 267756 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1252 SAMTools SNP 267771 267771 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1252 SAMTools SNP 267786 267786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 268323 268323 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1252 SAMTools SNP 268410 268410 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 269137 269137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1252 SAMTools SNP 269176 269176 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1252 SAMTools SNP 274595 274595 12.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1252 SAMTools SNP 278276 278276 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 278319 278319 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 282820 282820 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 283228 283228 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 284955 284955 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1252 SAMTools SNP 285798 285798 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 301557 301557 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 301575 301575 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 314351 314351 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1252 SAMTools SNP 314452 314452 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1252 SAMTools SNP 315345 315345 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1252 SAMTools SNP 316052 316052 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1252 SAMTools SNP 317645 317645 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 318115 318115 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 318859 318859 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 319425 319425 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1252 SAMTools SNP 319655 319655 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 320416 320416 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 321168 321168 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 321587 321587 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 321957 321957 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1252 SAMTools SNP 322276 322276 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1252 SAMTools SNP 327698 327698 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 327705 327705 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1252 SAMTools SNP 332588 332588 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 332648 332648 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1252 SAMTools SNP 339114 339114 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1252 SAMTools SNP 342696 342696 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1253 SAMTools SNP 25863 25863 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1253 SAMTools SNP 37902 37902 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.15%2C9.1e-10%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C98:99 scaffold1253 SAMTools SNP 111761 111761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1253 SAMTools SNP 111808 111808 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 651 651 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 674 674 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 3639 3639 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 3843 3843 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 28348 28348 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 28378 28378 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 28384 28384 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 29743 29743 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 30365 30365 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1255 SAMTools SNP 30628 30628 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 33643 33643 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1255 SAMTools SNP 33678 33678 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold1255 SAMTools SNP 33849 33849 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1255 SAMTools SNP 34388 34388 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C219:99 scaffold1255 SAMTools SNP 34403 34403 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C219:99 scaffold1255 SAMTools SNP 35824 35824 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1255 SAMTools SNP 35830 35830 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1255 SAMTools SNP 35861 35861 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1255 SAMTools SNP 35962 35962 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1255 SAMTools SNP 36013 36013 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1255 SAMTools SNP 36534 36534 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1255 SAMTools SNP 36538 36538 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1255 SAMTools SNP 37106 37106 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.099%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1255 SAMTools SNP 37132 37132 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1255 SAMTools SNP 37156 37156 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.004%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C241:34 scaffold1255 SAMTools SNP 37710 37710 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1255 SAMTools SNP 37741 37741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1255 SAMTools SNP 43358 43358 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1255 SAMTools SNP 43475 43475 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C36%2C0:69 scaffold1255 SAMTools SNP 43811 43811 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold1255 SAMTools SNP 48910 48910 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1255 SAMTools SNP 51881 51881 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 58303 58303 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1255 SAMTools SNP 58356 58356 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1255 SAMTools SNP 58380 58380 64.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1255 SAMTools SNP 59188 59188 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C169%2C0:99 scaffold1255 SAMTools SNP 59677 59677 44.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1255 SAMTools SNP 60220 60220 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1255 SAMTools SNP 60461 60461 35.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1255 SAMTools SNP 60798 60798 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1255 SAMTools SNP 86551 86551 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1255 SAMTools SNP 86563 86563 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1255 SAMTools SNP 86621 86621 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.012%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1255 SAMTools SNP 88353 88353 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.26%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1255 SAMTools SNP 91149 91149 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1255 SAMTools SNP 102053 102053 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1255 SAMTools SNP 102181 102181 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1255 SAMTools SNP 102219 102219 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1255 SAMTools SNP 108784 108784 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1255 SAMTools SNP 108847 108847 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1255 SAMTools SNP 109307 109307 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C188:99 scaffold1255 SAMTools SNP 109355 109355 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1255 SAMTools SNP 110119 110119 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1255 SAMTools SNP 110151 110151 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1255 SAMTools SNP 116192 116192 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 116661 116661 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 116676 116676 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1255 SAMTools SNP 117633 117633 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 118090 118090 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1255 SAMTools SNP 118114 118114 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1255 SAMTools SNP 118980 118980 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1255 SAMTools SNP 119411 119411 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 119438 119438 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 120385 120385 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold1255 SAMTools SNP 120640 120640 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1255 SAMTools SNP 121205 121205 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D48%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C212:99 scaffold1255 SAMTools SNP 121265 121265 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1255 SAMTools SNP 121277 121277 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D3.49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C28:31 scaffold1255 SAMTools SNP 168140 168140 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1255 SAMTools SNP 168545 168545 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1255 SAMTools SNP 168947 168947 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 174511 174511 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C57%2C0:87 scaffold1255 SAMTools SNP 174578 174578 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1255 SAMTools SNP 175587 175587 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1255 SAMTools SNP 176159 176159 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 176172 176172 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 176236 176236 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1255 SAMTools SNP 176954 176954 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1255 SAMTools SNP 180330 180330 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 182088 182088 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1255 SAMTools SNP 183004 183004 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C30%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1255 SAMTools SNP 186087 186087 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C11%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C211%2C0:99 scaffold1255 SAMTools SNP 186862 186862 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 187538 187538 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C38%2C43%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 201072 201072 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1255 SAMTools SNP 201144 201144 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C8%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1255 SAMTools SNP 201183 201183 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C42%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1255 SAMTools SNP 202937 202937 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 202958 202958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C8%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold1255 SAMTools SNP 203576 203576 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C4%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.028%2C0.02%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1255 SAMTools SNP 203701 203701 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 203767 203767 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1255 SAMTools SNP 203910 203910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C21%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 203943 203943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C42%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1255 SAMTools SNP 203967 203967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C35%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.45%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 204510 204510 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1255 SAMTools SNP 205190 205190 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1255 SAMTools SNP 205208 205208 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C38:41 scaffold1255 SAMTools SNP 206532 206532 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1255 SAMTools SNP 206556 206556 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1255 SAMTools SNP 207325 207325 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1255 SAMTools SNP 207349 207349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 212896 212896 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1255 SAMTools SNP 214999 214999 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold1255 SAMTools SNP 217129 217129 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1255 SAMTools SNP 217286 217286 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 217289 217289 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 217526 217526 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1255 SAMTools SNP 217593 217593 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.067%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1255 SAMTools SNP 217621 217621 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C5%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C129%2C0:99 scaffold1255 SAMTools SNP 217859 217859 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C27%2C0:51 scaffold1255 SAMTools SNP 218372 218372 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold1255 SAMTools SNP 218403 218403 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.021%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1255 SAMTools SNP 218526 218526 65.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold1255 SAMTools SNP 218675 218675 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C8.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C184:40 scaffold1255 SAMTools SNP 219907 219907 17.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1255 SAMTools SNP 220714 220714 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1255 SAMTools SNP 220745 220745 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1255 SAMTools SNP 221524 221524 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1255 SAMTools SNP 222009 222009 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C180:99 scaffold1255 SAMTools SNP 222051 222051 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1255 SAMTools SNP 222123 222123 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 222695 222695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1255 SAMTools SNP 233676 233676 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 233717 233717 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 235986 235986 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C246:40 scaffold1255 SAMTools SNP 236150 236150 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C128%2C10%2C18%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.83%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1255 SAMTools SNP 236189 236189 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C91%2C8%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 237549 237549 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1255 SAMTools SNP 238202 238202 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C51%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 238231 238231 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C19%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 238243 238243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 238792 238792 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C62%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1255 SAMTools SNP 238825 238825 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C7.7e-18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 239210 239210 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C30%2C0%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.049%2C5.1e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1255 SAMTools SNP 239288 239288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-05%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 239706 239706 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 240074 240074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.2e-21%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 240084 240084 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C17%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1255 SAMTools SNP 243665 243665 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.2%2C5.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1255 SAMTools SNP 243811 243811 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1255 SAMTools SNP 247604 247604 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0029%2C0.0001%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1255 SAMTools SNP 254163 254163 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D520%2C951%2C59%2C206%3BMQ%3D50%3BFQ%3D90%3BPV4%3D2.7e-05%2C9e-09%2C0.00037%2C7.5e-160;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1255 SAMTools SNP 257285 257285 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C152:99 scaffold1255 SAMTools SNP 260268 260268 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 272005 272005 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1255 SAMTools SNP 276107 276107 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.26%2C6.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1255 SAMTools SNP 290050 290050 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.053%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C252:97 scaffold1255 SAMTools SNP 290053 290053 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.027%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C242:92 scaffold1255 SAMTools SNP 290055 290055 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.053%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C238:80 scaffold1255 SAMTools SNP 291621 291621 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C13%2C79%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 293075 293075 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C59%2C28%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1255 SAMTools SNP 293111 293111 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C78%2C11%2C7%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.13%2C0.24%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1255 SAMTools SNP 293117 293117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C23%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1255 SAMTools SNP 295881 295881 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C310%2C68%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 297718 297718 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1255 SAMTools SNP 298137 298137 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold1255 SAMTools SNP 298279 298279 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1255 SAMTools SNP 298408 298408 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C208%2C0%2C179%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1255 SAMTools SNP 301081 301081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1255 SAMTools SNP 303078 303078 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C59%2C89%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-12%2C0.00036%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 303129 303129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C15%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1255 SAMTools SNP 303597 303597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C43%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 310849 310849 31.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1255 SAMTools SNP 311818 311818 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1255 SAMTools SNP 312574 312574 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C40%2C42%2C37%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.7e-127%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1255 SAMTools SNP 312882 312882 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C30%2C0:57 scaffold1255 SAMTools SNP 312963 312963 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C3%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.7%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold1255 SAMTools SNP 314315 314315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1255 SAMTools SNP 319926 319926 50.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1255 SAMTools SNP 320407 320407 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1255 SAMTools SNP 322759 322759 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.018%2C0.00014%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C210:49 scaffold1255 SAMTools SNP 323838 323838 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C21%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 323850 323850 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C29%2C22%2C0%3BMQ%3D49%3BFQ%3D142%3BPV4%3D3.8e-05%2C0.16%2C0.048%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1255 SAMTools SNP 323853 323853 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C30%2C20%2C0%3BMQ%3D49%3BFQ%3D130%3BPV4%3D7.8e-05%2C1%2C0.036%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1255 SAMTools SNP 323988 323988 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C27%2C0:51 scaffold1255 SAMTools SNP 324018 324018 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 328022 328022 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1255 SAMTools SNP 328065 328065 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C255%2C0:99 scaffold1255 SAMTools SNP 328628 328628 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C14%2C22%2C8%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C7.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1255 SAMTools SNP 331180 331180 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1255 SAMTools SNP 331559 331559 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C26%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 332087 332087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1255 SAMTools SNP 332425 332425 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 333592 333592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 334405 334405 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1255 SAMTools SNP 335225 335225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 335373 335373 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1255 SAMTools SNP 335716 335716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 336017 336017 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1255 SAMTools SNP 336888 336888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1255 SAMTools SNP 336933 336933 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1255 SAMTools SNP 337308 337308 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C2%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.46%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1255 SAMTools SNP 337795 337795 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1255 SAMTools SNP 337877 337877 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1255 SAMTools SNP 338054 338054 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1255 SAMTools SNP 338108 338108 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C10%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1255 SAMTools SNP 338529 338529 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.02%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1255 SAMTools SNP 338541 338541 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 338598 338598 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1255 SAMTools SNP 338986 338986 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1255 SAMTools SNP 339162 339162 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1255 SAMTools SNP 339178 339178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1255 SAMTools SNP 339405 339405 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 339807 339807 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 339855 339855 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 340003 340003 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.49%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1255 SAMTools SNP 340351 340351 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1255 SAMTools SNP 340398 340398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1255 SAMTools SNP 340753 340753 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.5%2C0.0066%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C212:62 scaffold1255 SAMTools SNP 341446 341446 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1255 SAMTools SNP 341491 341491 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1255 SAMTools SNP 342252 342252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1255 SAMTools SNP 342438 342438 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 342498 342498 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1255 SAMTools SNP 343228 343228 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0043%2C1%2C1%2C9.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1255 SAMTools SNP 343284 343284 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.046%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1255 SAMTools SNP 343304 343304 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1255 SAMTools SNP 343793 343793 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1255 SAMTools SNP 343916 343916 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C153:74 scaffold1255 SAMTools SNP 345242 345242 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1255 SAMTools SNP 364597 364597 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0019%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1255 SAMTools SNP 365404 365404 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C5%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.012%2C0.035%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1255 SAMTools SNP 365426 365426 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.0072%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 365743 365743 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1255 SAMTools SNP 365843 365843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 365855 365855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1255 SAMTools SNP 366189 366189 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 366517 366517 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C39%2C0:75 scaffold1255 SAMTools SNP 366653 366653 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C25%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C148%2C0:99 scaffold1255 SAMTools SNP 367548 367548 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1255 SAMTools SNP 367572 367572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1255 SAMTools SNP 367586 367586 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.033%2C9.4e-08%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1255 SAMTools SNP 368296 368296 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1255 SAMTools SNP 368333 368333 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.52%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1255 SAMTools SNP 372405 372405 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C230:99 scaffold1255 SAMTools SNP 373116 373116 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C16%2C155%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 373132 373132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C22%2C152%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.00021%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 373699 373699 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C271%2C164%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 374614 374614 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.32%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1255 SAMTools SNP 374617 374617 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C73%2C2%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.3%2C0.24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1255 SAMTools SNP 374949 374949 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1255 SAMTools SNP 377216 377216 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C14%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1.5e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 377315 377315 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C16%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1255 SAMTools SNP 377542 377542 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.033%2C0.00028%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1255 SAMTools SNP 377942 377942 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0:63 scaffold1255 SAMTools SNP 378416 378416 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold1255 SAMTools SNP 378440 378440 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1255 SAMTools SNP 379183 379183 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.54%2C0.0037%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1255 SAMTools SNP 379196 379196 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.54%2C0.0061%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1255 SAMTools SNP 380263 380263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 380655 380655 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1255 SAMTools SNP 384806 384806 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C10%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1255 SAMTools SNP 385386 385386 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C32:35 scaffold1255 SAMTools SNP 386374 386374 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1255 SAMTools SNP 386416 386416 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1255 SAMTools SNP 386434 386434 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.00012%2C2.5e-08%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1255 SAMTools SNP 479544 479544 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1255 SAMTools SNP 480809 480809 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1255 SAMTools SNP 480887 480887 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C33%2C0:63 scaffold1255 SAMTools SNP 485773 485773 52.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1255 SAMTools SNP 486457 486457 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1255 SAMTools SNP 487998 487998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1255 SAMTools SNP 488499 488499 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1255 SAMTools SNP 488501 488501 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1255 SAMTools SNP 489278 489278 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1255 SAMTools SNP 489619 489619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1255 SAMTools SNP 489658 489658 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1255 SAMTools SNP 491527 491527 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1255 SAMTools SNP 492256 492256 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C0.062%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 492286 492286 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.16%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C236:99 scaffold1255 SAMTools SNP 492373 492373 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1255 SAMTools SNP 493300 493300 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1255 SAMTools SNP 493304 493304 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1255 SAMTools SNP 493407 493407 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.028%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1255 SAMTools SNP 493494 493494 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1255 SAMTools SNP 493512 493512 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 493894 493894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 493997 493997 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C245:99 scaffold1255 SAMTools SNP 494172 494172 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold1255 SAMTools SNP 494193 494193 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1255 SAMTools SNP 494250 494250 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold1255 SAMTools SNP 494612 494612 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1255 SAMTools SNP 494628 494628 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1255 SAMTools SNP 495270 495270 22.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1255 SAMTools SNP 498131 498131 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1255 SAMTools SNP 502027 502027 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1255 SAMTools SNP 502036 502036 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C87%2C0:99 scaffold1255 SAMTools SNP 504010 504010 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C121%2C42%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 504067 504067 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C221%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 506297 506297 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1255 SAMTools SNP 507641 507641 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1255 SAMTools SNP 507906 507906 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C34%2C80%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1255 SAMTools SNP 507915 507915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1256 SAMTools SNP 3794 3794 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1256 SAMTools SNP 5611 5611 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1256 SAMTools SNP 7275 7275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1256 SAMTools SNP 7276 7276 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1256 SAMTools SNP 8800 8800 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1256 SAMTools SNP 31763 31763 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1256 SAMTools SNP 37006 37006 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1256 SAMTools SNP 37129 37129 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1256 SAMTools SNP 45257 45257 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1256 SAMTools SNP 45738 45738 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1256 SAMTools SNP 46432 46432 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 54158 54158 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 54889 54889 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1256 SAMTools SNP 54910 54910 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1256 SAMTools SNP 55495 55495 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C99:99 scaffold1256 SAMTools SNP 55549 55549 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1256 SAMTools SNP 58171 58171 39.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1256 SAMTools SNP 63405 63405 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C69%2C0:99 scaffold1256 SAMTools SNP 63762 63762 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1256 SAMTools SNP 63768 63768 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold1256 SAMTools SNP 64880 64880 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1256 SAMTools SNP 64908 64908 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1256 SAMTools SNP 64911 64911 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1256 SAMTools SNP 64971 64971 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1256 SAMTools SNP 65929 65929 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1256 SAMTools SNP 66131 66131 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C199:33 scaffold1256 SAMTools SNP 69961 69961 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 70280 70280 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 85486 85486 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1256 SAMTools SNP 87520 87520 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.58%2C5.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1256 SAMTools SNP 87588 87588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 87589 87589 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1256 SAMTools SNP 87607 87607 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1256 SAMTools SNP 96967 96967 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 111447 111447 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1256 SAMTools SNP 113983 113983 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1256 SAMTools SNP 114183 114183 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 114506 114506 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1256 SAMTools SNP 114766 114766 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1256 SAMTools SNP 114798 114798 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C222:91 scaffold1256 SAMTools SNP 114995 114995 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1256 SAMTools SNP 116055 116055 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1256 SAMTools SNP 116061 116061 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1256 SAMTools SNP 116085 116085 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1256 SAMTools SNP 116690 116690 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C23%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1256 SAMTools SNP 116726 116726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C16%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1256 SAMTools SNP 116768 116768 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1256 SAMTools SNP 117534 117534 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C3%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1256 SAMTools SNP 117704 117704 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 117720 117720 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 117726 117726 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1256 SAMTools SNP 118040 118040 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.24%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1256 SAMTools SNP 118044 118044 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 118047 118047 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 118052 118052 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.13%2C1%2C2.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1256 SAMTools SNP 119546 119546 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 120089 120089 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1256 SAMTools SNP 120229 120229 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C77:80 scaffold1256 SAMTools SNP 120655 120655 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1256 SAMTools SNP 120670 120670 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold1256 SAMTools SNP 121018 121018 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.48%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1256 SAMTools SNP 121030 121030 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1256 SAMTools SNP 121473 121473 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C251:99 scaffold1256 SAMTools SNP 121488 121488 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C225:99 scaffold1256 SAMTools SNP 122868 122868 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1256 SAMTools SNP 124372 124372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1256 SAMTools SNP 124396 124396 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1256 SAMTools SNP 124423 124423 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1256 SAMTools SNP 124425 124425 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1256 SAMTools SNP 124815 124815 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1256 SAMTools SNP 124892 124892 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1256 SAMTools SNP 126100 126100 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C66%2C0:99 scaffold1258 SAMTools SNP 63 63 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 89 89 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 432 432 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold1258 SAMTools SNP 489 489 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 1922 1922 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C39%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.018%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1258 SAMTools SNP 2385 2385 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C36%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.13%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1258 SAMTools SNP 2451 2451 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C8%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1.3e-06%2C4.6e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C241:49 scaffold1258 SAMTools SNP 2508 2508 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1258 SAMTools SNP 2983 2983 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00098%2C0.085%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 3007 3007 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1258 SAMTools SNP 3013 3013 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.00022%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1258 SAMTools SNP 3220 3220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1258 SAMTools SNP 3241 3241 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0112%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C5.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1258 SAMTools SNP 3259 3259 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C73%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C1%2C1%2C2.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 3607 3607 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C21%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 5675 5675 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1258 SAMTools SNP 5695 5695 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C81%2C0%2C15%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1258 SAMTools SNP 9164 9164 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C75%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1258 SAMTools SNP 9180 9180 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 9521 9521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 10296 10296 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1258 SAMTools SNP 10323 10323 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 10380 10380 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1258 SAMTools SNP 11164 11164 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1258 SAMTools SNP 11191 11191 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold1258 SAMTools SNP 11219 11219 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C152:99 scaffold1258 SAMTools SNP 11754 11754 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C24:27 scaffold1258 SAMTools SNP 12099 12099 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1258 SAMTools SNP 12135 12135 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1258 SAMTools SNP 18226 18226 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 19544 19544 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 19994 19994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 20048 20048 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 20510 20510 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 20736 20736 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1258 SAMTools SNP 21679 21679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1258 SAMTools SNP 21733 21733 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1258 SAMTools SNP 21758 21758 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1258 SAMTools SNP 21784 21784 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1258 SAMTools SNP 22411 22411 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C244:99 scaffold1258 SAMTools SNP 22724 22724 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C2%2C45%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 23190 23190 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C0%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 23243 23243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1258 SAMTools SNP 24232 24232 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 77336 77336 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1258 SAMTools SNP 77554 77554 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1258 SAMTools SNP 78230 78230 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.077%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1258 SAMTools SNP 81183 81183 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C12%2C19%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.45%2C0.48%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1258 SAMTools SNP 81646 81646 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 82367 82367 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0048%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1258 SAMTools SNP 84935 84935 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1258 SAMTools SNP 84941 84941 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1258 SAMTools SNP 89070 89070 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 107104 107104 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 118563 118563 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0018%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C115:44 scaffold1258 SAMTools SNP 118567 118567 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00048%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C98:28 scaffold1258 SAMTools SNP 118886 118886 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1258 SAMTools SNP 119609 119609 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1258 SAMTools SNP 119784 119784 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1258 SAMTools SNP 121194 121194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C10%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1258 SAMTools SNP 121224 121224 92.5 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C19%2C7%2C120%2C0%2C117:21 scaffold1258 SAMTools SNP 121227 121227 44.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1258 SAMTools SNP 121700 121700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C26%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1258 SAMTools SNP 121907 121907 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1258 SAMTools SNP 122069 122069 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1258 SAMTools SNP 122072 122072 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1258 SAMTools SNP 122387 122387 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1258 SAMTools SNP 122414 122414 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1258 SAMTools SNP 122417 122417 84.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1258 SAMTools SNP 122430 122430 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0201%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold1258 SAMTools SNP 124508 124508 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C75%2C0:99 scaffold1258 SAMTools SNP 125084 125084 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1258 SAMTools SNP 125122 125122 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C16%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1258 SAMTools SNP 125657 125657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C15%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1258 SAMTools SNP 131715 131715 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1258 SAMTools SNP 133017 133017 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 133324 133324 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1258 SAMTools SNP 133738 133738 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1258 SAMTools SNP 134484 134484 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1258 SAMTools SNP 138447 138447 21.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1258 SAMTools SNP 142592 142592 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1258 SAMTools SNP 143710 143710 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1258 SAMTools SNP 145065 145065 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C100:66 scaffold1258 SAMTools SNP 146123 146123 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1258 SAMTools SNP 146155 146155 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.25%2C0.24%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1258 SAMTools SNP 146188 146188 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.27%2C1.9e-05%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1258 SAMTools SNP 146220 146220 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 152453 152453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1258 SAMTools SNP 184600 184600 169 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C47%2C74%2C170%2C0%2C204:30 scaffold1258 SAMTools SNP 184622 184622 43 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C25%2C44%2C53%2C0%2C74:22 scaffold1258 SAMTools SNP 195716 195716 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C2%3BMQ%3D49%3BFQ%3D128%3BPV4%3D0.33%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1258 SAMTools SNP 196854 196854 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1258 SAMTools SNP 196856 196856 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1258 SAMTools SNP 196857 196857 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1258 SAMTools SNP 196862 196862 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1258 SAMTools SNP 197159 197159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1258 SAMTools SNP 197226 197226 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 197711 197711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1258 SAMTools SNP 199046 199046 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 199145 199145 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 199739 199739 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold1258 SAMTools SNP 200392 200392 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1258 SAMTools SNP 200393 200393 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1258 SAMTools SNP 200781 200781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.65%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1258 SAMTools SNP 201906 201906 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1258 SAMTools SNP 201941 201941 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 201969 201969 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1258 SAMTools SNP 202274 202274 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1258 SAMTools SNP 202391 202391 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C95:98 scaffold1258 SAMTools SNP 202709 202709 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C15%2C0:27 scaffold1258 SAMTools SNP 204526 204526 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.017%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1258 SAMTools SNP 204547 204547 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C104:42 scaffold1258 SAMTools SNP 204548 204548 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1258 SAMTools SNP 205511 205511 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1258 SAMTools SNP 205514 205514 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1258 SAMTools SNP 207498 207498 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1258 SAMTools SNP 208496 208496 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 208500 208500 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 208902 208902 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.43%2C1.3e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C134:66 scaffold1258 SAMTools SNP 209131 209131 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.00069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C208:39 scaffold1258 SAMTools SNP 209519 209519 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1258 SAMTools SNP 209572 209572 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1258 SAMTools SNP 209781 209781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.39%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1258 SAMTools SNP 209823 209823 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.28%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C241:99 scaffold1258 SAMTools SNP 219426 219426 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 219622 219622 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C237:99 scaffold1258 SAMTools SNP 220062 220062 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C3%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.15%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1258 SAMTools SNP 220071 220071 104 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C87%2C0%2C103%2C26%2C97:99 scaffold1258 SAMTools SNP 220140 220140 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1258 SAMTools SNP 220438 220438 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C22%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1258 SAMTools SNP 220621 220621 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.012%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 220655 220655 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C13%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D2.6e-05%2C1.5e-07%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1258 SAMTools SNP 221226 221226 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1258 SAMTools SNP 221816 221816 38.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1258 SAMTools SNP 224314 224314 66.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1258 SAMTools SNP 224512 224512 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C52%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C166%2C0:99 scaffold1258 SAMTools SNP 227516 227516 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1258 SAMTools SNP 227855 227855 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1258 SAMTools SNP 231398 231398 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1258 SAMTools SNP 238414 238414 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 239206 239206 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 240360 240360 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 240370 240370 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 241590 241590 27.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1258 SAMTools SNP 242976 242976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 243467 243467 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 254753 254753 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold1258 SAMTools SNP 256094 256094 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C26%2C68%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 260212 260212 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C115%2C11%2C77%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.35%2C1.9e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1258 SAMTools SNP 263378 263378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C234%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 265773 265773 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1258 SAMTools SNP 266625 266625 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C144%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 269751 269751 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C83%2C29%2C56%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 270322 270322 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C21%2C67%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 272428 272428 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C147:40 scaffold1258 SAMTools SNP 275128 275128 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C239:47 scaffold1258 SAMTools SNP 275886 275886 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.18%2C7.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1258 SAMTools SNP 277844 277844 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1258 SAMTools SNP 278200 278200 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C23%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1258 SAMTools SNP 279908 279908 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C209:63 scaffold1258 SAMTools SNP 282739 282739 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1258 SAMTools SNP 282764 282764 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1258 SAMTools SNP 285416 285416 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1258 SAMTools SNP 285428 285428 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1258 SAMTools SNP 285614 285614 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1258 SAMTools SNP 285686 285686 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1258 SAMTools SNP 286093 286093 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1258 SAMTools SNP 286129 286129 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1258 SAMTools SNP 286240 286240 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 286331 286331 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 286388 286388 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1258 SAMTools SNP 287324 287324 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1258 SAMTools SNP 287544 287544 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1258 SAMTools SNP 387191 387191 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1258 SAMTools SNP 388973 388973 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1258 SAMTools SNP 389771 389771 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.035%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1258 SAMTools SNP 390013 390013 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 393709 393709 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1258 SAMTools SNP 394157 394157 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1258 SAMTools SNP 423013 423013 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 423407 423407 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1258 SAMTools SNP 423755 423755 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C1%2C10%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1258 SAMTools SNP 424236 424236 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1258 SAMTools SNP 458586 458586 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1258 SAMTools SNP 458827 458827 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1258 SAMTools SNP 486234 486234 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1258 SAMTools SNP 486330 486330 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1258 SAMTools SNP 491473 491473 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 505148 505148 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.27%2C6.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1258 SAMTools SNP 505913 505913 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold1258 SAMTools SNP 505921 505921 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C48%2C0:93 scaffold1258 SAMTools SNP 506132 506132 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1258 SAMTools SNP 506204 506204 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1258 SAMTools SNP 506470 506470 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.01%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C230:99 scaffold1258 SAMTools SNP 506531 506531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1258 SAMTools SNP 518958 518958 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.35%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C237:99 scaffold1258 SAMTools SNP 519302 519302 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1258 SAMTools SNP 519320 519320 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 520609 520609 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 520678 520678 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1.1e-06%2C0.2%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1258 SAMTools SNP 520684 520684 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C11%2C0%2C12%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1.9e-07%2C0.082%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1258 SAMTools SNP 521343 521343 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.32%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold1258 SAMTools SNP 539894 539894 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C9.8e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C96:99 scaffold1258 SAMTools SNP 540626 540626 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1258 SAMTools SNP 540633 540633 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1258 SAMTools SNP 543351 543351 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C32:35 scaffold1258 SAMTools SNP 544400 544400 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1258 SAMTools SNP 544585 544585 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C167:99 scaffold1258 SAMTools SNP 549321 549321 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold1258 SAMTools SNP 580229 580229 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 586138 586138 30.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1258 SAMTools SNP 586294 586294 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C93%2C0:99 scaffold1258 SAMTools SNP 586658 586658 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1258 SAMTools SNP 587533 587533 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1258 SAMTools SNP 599742 599742 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold1258 SAMTools SNP 600529 600529 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D50.4%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C86:80 scaffold1258 SAMTools SNP 628514 628514 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1258 SAMTools SNP 631268 631268 25.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1258 SAMTools SNP 632565 632565 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1258 SAMTools SNP 632822 632822 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.0014%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1258 SAMTools SNP 632837 632837 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1.5e-06%2C1.1e-12%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1258 SAMTools SNP 634039 634039 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C23%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold1258 SAMTools SNP 638563 638563 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 638755 638755 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.007%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1258 SAMTools SNP 638767 638767 90 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1258 SAMTools SNP 638780 638780 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1258 SAMTools SNP 640082 640082 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1258 SAMTools SNP 641912 641912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 642007 642007 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1258 SAMTools SNP 642241 642241 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold1258 SAMTools SNP 648290 648290 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C218:50 scaffold1258 SAMTools SNP 649110 649110 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1258 SAMTools SNP 649189 649189 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C108%2C0:99 scaffold1258 SAMTools SNP 652746 652746 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold1258 SAMTools SNP 652891 652891 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1258 SAMTools SNP 653995 653995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1258 SAMTools SNP 661381 661381 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1258 SAMTools SNP 661427 661427 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00058%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C180:99 scaffold1258 SAMTools SNP 661436 661436 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1258 SAMTools SNP 664086 664086 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1258 SAMTools SNP 664119 664119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1258 SAMTools SNP 665470 665470 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1258 SAMTools SNP 666103 666103 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C48%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 666120 666120 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C14%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 683493 683493 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 683507 683507 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 683531 683531 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1258 SAMTools SNP 684276 684276 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.38%2C1%2C3.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold1258 SAMTools SNP 684731 684731 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1258 SAMTools SNP 684816 684816 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C150:77 scaffold1258 SAMTools SNP 685520 685520 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.0085%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1258 SAMTools SNP 685547 685547 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 685588 685588 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1258 SAMTools SNP 685595 685595 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1258 SAMTools SNP 716580 716580 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1258 SAMTools SNP 716646 716646 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1258 SAMTools SNP 721109 721109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1258 SAMTools SNP 721158 721158 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1258 SAMTools SNP 721378 721378 57.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold1258 SAMTools SNP 721584 721584 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold1258 SAMTools SNP 721677 721677 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1258 SAMTools SNP 721860 721860 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1258 SAMTools SNP 722019 722019 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.11%2C7.4e-09%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C152:68 scaffold1258 SAMTools SNP 722400 722400 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.39%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1258 SAMTools SNP 726356 726356 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1258 SAMTools SNP 729123 729123 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1258 SAMTools SNP 729133 729133 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.054%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1258 SAMTools SNP 735368 735368 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1258 SAMTools SNP 735389 735389 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1258 SAMTools SNP 739328 739328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 739900 739900 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C50%2C44%2C21%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 739960 739960 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C83%2C25%2C33%3BMQ%3D47%3BFQ%3D45%3BPV4%3D0.059%2C1.1e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1258 SAMTools SNP 739990 739990 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C126%2C7%2C11%3BMQ%3D46%3BFQ%3D36%3BPV4%3D0.027%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1258 SAMTools SNP 742174 742174 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C6%2C0%3BMQ%3D47%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C213:59 scaffold1258 SAMTools SNP 743532 743532 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 744098 744098 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1258 SAMTools SNP 744232 744232 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.37%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C95:98 scaffold1258 SAMTools SNP 744239 744239 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1258 SAMTools SNP 744245 744245 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1258 SAMTools SNP 744938 744938 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C128%3BMQ%3D39%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 744941 744941 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C100%2C6%2C29%3BMQ%3D39%3BFQ%3D225%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 744959 744959 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C3%2C4%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.34%2C1%2C8.9e-06%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1258 SAMTools SNP 745325 745325 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C27%3BMQ%3D47%3BFQ%3D199%3BPV4%3D0.00025%2C1%2C0.00053%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1258 SAMTools SNP 745334 745334 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C13%2C22%3BMQ%3D47%3BFQ%3D199%3BPV4%3D0.00025%2C0.00074%2C1%2C1.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1258 SAMTools SNP 745379 745379 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1258 SAMTools SNP 745391 745391 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1258 SAMTools SNP 745514 745514 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1258 SAMTools SNP 745537 745537 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.3%2C5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C77:80 scaffold1258 SAMTools SNP 745574 745574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C51%2C53%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.079%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold1258 SAMTools SNP 745598 745598 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C70%2C15%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.068%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1258 SAMTools SNP 745616 745616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 746477 746477 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 746507 746507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C56%2C49%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 746571 746571 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D29%2C121%2C7%2C30%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.2e-05%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1258 SAMTools SNP 746886 746886 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C36%2C133%2C57%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D9.7e-17%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1258 SAMTools SNP 747941 747941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C50%2C9%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-09%2C0.039%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 747953 747953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C29%2C7%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-15%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 748040 748040 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C9%2C1%2C94%3BMQ%3D50%3BFQ%3D82%3BPV4%3D7.7e-41%2C2.7e-116%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1258 SAMTools SNP 748067 748067 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C91%2C16%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D6.7e-15%2C0.002%2C1%2C8.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1258 SAMTools SNP 748112 748112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 750074 750074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C37%2C36%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 750080 750080 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C39%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 750789 750789 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C47%2C45%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 750848 750848 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1258 SAMTools SNP 750849 750849 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D46.5%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C76:76 scaffold1258 SAMTools SNP 751482 751482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C33%2C95%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 751769 751769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C263%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 751817 751817 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C235%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 752195 752195 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1258 SAMTools SNP 758228 758228 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1258 SAMTools SNP 767587 767587 73 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D1306%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C30%2C0%2C103%2C17%2C100:57 scaffold1258 SAMTools SNP 768212 768212 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1258 SAMTools SNP 771926 771926 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C7%2C44%2C121%3BMQ%3D50%3BFQ%3D116%3BPV4%3D4.9e-24%2C6.2e-152%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1258 SAMTools SNP 771959 771959 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D69%2C9%2C40%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.027%2C4.4e-10%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1258 SAMTools SNP 772516 772516 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C90%2C134%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 773068 773068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1381%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C879%2C476%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 775784 775784 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C42%2C205%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-15%2C1%2C1%2C1.4e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 775798 775798 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D177%2C49%2C215%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 776184 776184 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C7%2C69%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-24%2C1%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 776194 776194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C101%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 776226 776226 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C153%2C8%2C206%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-09%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 776580 776580 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D820%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D335%2C61%2C411%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-11%2C3.9e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 776619 776619 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1258 SAMTools SNP 776664 776664 104 . . REF=A;ALT=T,G,C;FILTER=.;INFO=DP%3D1024%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C102%2C0%2C127%2C76%2C124%2C134%2C84%2C121%2C131:99 scaffold1258 SAMTools SNP 776823 776823 187 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D798%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C19%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C157%2C0%2C206%2C111%2C200:99 scaffold1258 SAMTools SNP 776846 776846 132 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D672%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C45%2C0%2C164%2C32%2C161:87 scaffold1258 SAMTools SNP 776986 776986 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1258 SAMTools SNP 776996 776996 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1258 SAMTools SNP 777015 777015 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0035%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1258 SAMTools SNP 777373 777373 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.36%2C8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1258 SAMTools SNP 780692 780692 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.17%2C4.4e-06%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold1258 SAMTools SNP 780830 780830 25.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C18:21 scaffold1258 SAMTools SNP 780901 780901 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1258 SAMTools SNP 780930 780930 21.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1258 SAMTools SNP 781388 781388 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C126:77 scaffold1258 SAMTools SNP 781399 781399 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C107:54 scaffold1258 SAMTools SNP 782141 782141 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1258 SAMTools SNP 785408 785408 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C66%2C0:99 scaffold1258 SAMTools SNP 785481 785481 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 788727 788727 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6.4e-12%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C211:28 scaffold1258 SAMTools SNP 788895 788895 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1258 SAMTools SNP 790541 790541 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C5:8 scaffold1258 SAMTools SNP 791162 791162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 793565 793565 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.56%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1258 SAMTools SNP 793568 793568 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C23%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.54%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1258 SAMTools SNP 793586 793586 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1258 SAMTools SNP 793607 793607 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 797876 797876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1258 SAMTools SNP 797948 797948 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 797966 797966 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1258 SAMTools SNP 797970 797970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1258 SAMTools SNP 798509 798509 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.08%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C183:99 scaffold1258 SAMTools SNP 798531 798531 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C250:44 scaffold1258 SAMTools SNP 798956 798956 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1258 SAMTools SNP 798969 798969 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1258 SAMTools SNP 800100 800100 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1258 SAMTools SNP 800161 800161 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.052%2C5.8e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1258 SAMTools SNP 800163 800163 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C26%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.003%2C1.6e-05%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1258 SAMTools SNP 801807 801807 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C209:99 scaffold1258 SAMTools SNP 802984 802984 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1258 SAMTools SNP 803006 803006 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1258 SAMTools SNP 805900 805900 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00016%2C0.034%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1258 SAMTools SNP 805915 805915 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1258 SAMTools SNP 805942 805942 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.11%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C15:18 scaffold1258 SAMTools SNP 806024 806024 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C11%2C3%2C14%3BMQ%3D50%3BFQ%3D204%3BPV4%3D3.5e-07%2C0.011%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1258 SAMTools SNP 807235 807235 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C35%2C4%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1258 SAMTools SNP 807311 807311 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C69%2C0:99 scaffold1258 SAMTools SNP 809484 809484 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.001%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1258 SAMTools SNP 809494 809494 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1258 SAMTools SNP 809499 809499 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold1258 SAMTools SNP 809532 809532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1258 SAMTools SNP 809535 809535 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1258 SAMTools SNP 810059 810059 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1258 SAMTools SNP 811027 811027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1258 SAMTools SNP 811052 811052 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1258 SAMTools SNP 814743 814743 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1258 SAMTools SNP 814758 814758 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1258 SAMTools SNP 814958 814958 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold1258 SAMTools SNP 819861 819861 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1258 SAMTools SNP 820058 820058 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold1258 SAMTools SNP 827813 827813 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1258 SAMTools SNP 827858 827858 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold1258 SAMTools SNP 829363 829363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1258 SAMTools SNP 829465 829465 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C74:77 scaffold1258 SAMTools SNP 829873 829873 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C3%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.63%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1258 SAMTools SNP 829892 829892 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C21%3BMQ%3D50%3BFQ%3D218%3BPV4%3D5.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C250:99 scaffold1258 SAMTools SNP 829964 829964 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1258 SAMTools SNP 829983 829983 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.24%2C0.0018%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1258 SAMTools SNP 830446 830446 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C11%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.006%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1258 SAMTools SNP 830476 830476 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1258 SAMTools SNP 830514 830514 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1258 SAMTools SNP 830563 830563 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1258 SAMTools SNP 831132 831132 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1258 SAMTools SNP 832400 832400 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.016%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1258 SAMTools SNP 832446 832446 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.52%2C0.005%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1258 SAMTools SNP 832893 832893 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.58%2C0.36%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1258 SAMTools SNP 832901 832901 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.05%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1258 SAMTools SNP 832907 832907 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1258 SAMTools SNP 832947 832947 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1258 SAMTools SNP 832962 832962 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1258 SAMTools SNP 833168 833168 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C166:30 scaffold1258 SAMTools SNP 833195 833195 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1258 SAMTools SNP 833700 833700 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D26%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C0.0028%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C60:31 scaffold1258 SAMTools SNP 833704 833704 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D26%3BFQ%3D11.4%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C45:40 scaffold1258 SAMTools SNP 833735 833735 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D31%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C108%2C0:99 scaffold1258 SAMTools SNP 837475 837475 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D28%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C57%2C0:99 scaffold1258 SAMTools SNP 837517 837517 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C7%3BMQ%3D36%3BFQ%3D126%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C158:99 scaffold1258 SAMTools SNP 837846 837846 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C11%3BMQ%3D37%3BFQ%3D93%3BPV4%3D1%2C0.33%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C176:99 scaffold1259 SAMTools SNP 13490 13490 20.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C0.00012%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C8%2C0:13 scaffold1259 SAMTools SNP 14938 14938 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1259 SAMTools SNP 15837 15837 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1259 SAMTools SNP 21612 21612 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1259 SAMTools SNP 21628 21628 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1259 SAMTools SNP 114163 114163 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold126 SAMTools SNP 2703 2703 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 2806 2806 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 2856 2856 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 118301 118301 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold126 SAMTools SNP 153186 153186 17.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D42%3BFQ%3D-34%3BPV4%3D1%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C7%2C0:12 scaffold126 SAMTools SNP 195809 195809 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold126 SAMTools SNP 195839 195839 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold126 SAMTools SNP 209250 209250 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 218461 218461 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold126 SAMTools SNP 316359 316359 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold126 SAMTools SNP 316568 316568 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold126 SAMTools SNP 337729 337729 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold126 SAMTools SNP 338022 338022 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 339664 339664 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold126 SAMTools SNP 339689 339689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C22%2C0%3BMQ%3D48%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold126 SAMTools SNP 339841 339841 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold126 SAMTools SNP 339847 339847 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold126 SAMTools SNP 341053 341053 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold126 SAMTools SNP 341088 341088 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold126 SAMTools SNP 341275 341275 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C8%3BMQ%3D48%3BFQ%3D154%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold126 SAMTools SNP 341276 341276 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C9%3BMQ%3D48%3BFQ%3D166%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold126 SAMTools SNP 342459 342459 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold126 SAMTools SNP 342472 342472 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold126 SAMTools SNP 343255 343255 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold126 SAMTools SNP 347309 347309 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.11%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C205:50 scaffold126 SAMTools SNP 379120 379120 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C39%2C0:75 scaffold126 SAMTools SNP 419449 419449 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 419586 419586 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold126 SAMTools SNP 440533 440533 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold126 SAMTools SNP 443778 443778 19.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold126 SAMTools SNP 537406 537406 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 537417 537417 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold126 SAMTools SNP 537480 537480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1260 SAMTools SNP 3268 3268 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1260 SAMTools SNP 97516 97516 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1260 SAMTools SNP 98431 98431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1260 SAMTools SNP 98940 98940 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C245:99 scaffold1260 SAMTools SNP 98970 98970 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C225:47 scaffold1260 SAMTools SNP 107356 107356 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1260 SAMTools SNP 107681 107681 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1260 SAMTools SNP 107705 107705 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1260 SAMTools SNP 111657 111657 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1260 SAMTools SNP 128879 128879 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1262 SAMTools SNP 1928 1928 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 2616 2616 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 12098 12098 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1262 SAMTools SNP 77329 77329 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.02%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C219:99 scaffold1262 SAMTools SNP 77350 77350 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold1262 SAMTools SNP 81480 81480 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.06%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 81510 81510 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C26%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0025%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1262 SAMTools SNP 81588 81588 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 81756 81756 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 81831 81831 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 83105 83105 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.088%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1262 SAMTools SNP 83162 83162 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1262 SAMTools SNP 83179 83179 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1262 SAMTools SNP 83275 83275 15.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1262 SAMTools SNP 87217 87217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7764%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C2088%2C2906%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 87881 87881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6841%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2324%2C966%2C2129%2C292%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-57%2C1%2C1%2C2.7e-213;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 88674 88674 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1262 SAMTools SNP 88812 88812 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6658%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C3024%2C72%2C3197%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 92459 92459 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C43%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 92515 92515 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 92530 92530 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.28%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 93336 93336 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C36%2C4%3BMQ%3D50%3BFQ%3D-84%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1262 SAMTools SNP 93351 93351 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C7%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 93994 93994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 94350 94350 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1262 SAMTools SNP 96360 96360 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C61%2C5%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 96447 96447 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C6%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0002%2C5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1262 SAMTools SNP 96519 96519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C33%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 96683 96683 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C5%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1262 SAMTools SNP 96724 96724 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C10%2C34%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.079%2C5.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1262 SAMTools SNP 97518 97518 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1262 SAMTools SNP 101119 101119 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1262 SAMTools SNP 101141 101141 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.64%2C0.011%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1262 SAMTools SNP 101146 101146 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 101820 101820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C22%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 101850 101850 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 102797 102797 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1262 SAMTools SNP 103220 103220 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C48%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D8.8e-19%2C3.7e-41%2C1%2C3.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1262 SAMTools SNP 103250 103250 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C107%2C3%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 103549 103549 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C109%2C2%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 103624 103624 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1262 SAMTools SNP 103690 103690 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C25%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.26%2C0.15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1262 SAMTools SNP 103869 103869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C2%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1262 SAMTools SNP 103968 103968 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C56%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 103975 103975 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C8%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 104282 104282 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1262 SAMTools SNP 104333 104333 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1262 SAMTools SNP 104464 104464 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1262 SAMTools SNP 104477 104477 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C28%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.29%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1262 SAMTools SNP 104890 104890 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C5%2C15%2C12%3BMQ%3D50%3BFQ%3D135%3BPV4%3D3.2e-08%2C0.00037%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1262 SAMTools SNP 107347 107347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C218%2C10%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 107556 107556 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 109467 109467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C15%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-28%2C1%2C1%2C1.4e-39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 128640 128640 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C5.7e-41%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C212:66 scaffold1262 SAMTools SNP 128804 128804 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold1262 SAMTools SNP 129102 129102 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C9.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 135273 135273 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1262 SAMTools SNP 139794 139794 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1262 SAMTools SNP 143799 143799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1262 SAMTools SNP 144232 144232 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C10%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.75%2C6.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1262 SAMTools SNP 144379 144379 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold1262 SAMTools SNP 144499 144499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1262 SAMTools SNP 144511 144511 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C40%2C58%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-09%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 144721 144721 22.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold1262 SAMTools SNP 145062 145062 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 146957 146957 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1262 SAMTools SNP 151104 151104 4.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C1%2C0%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D1%2C0.0048%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C4%2C0:4 scaffold1262 SAMTools SNP 152176 152176 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C116%2C2%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 156977 156977 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.29%2C4.2e-20%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1262 SAMTools SNP 159391 159391 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 159777 159777 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1262 SAMTools SNP 161289 161289 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1262 SAMTools SNP 161429 161429 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 163820 163820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 165436 165436 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.099%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1262 SAMTools SNP 165442 165442 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1262 SAMTools SNP 167259 167259 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 168401 168401 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1262 SAMTools SNP 168420 168420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1262 SAMTools SNP 170152 170152 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1262 SAMTools SNP 170166 170166 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 174867 174867 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0:45 scaffold1262 SAMTools SNP 175272 175272 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1262 SAMTools SNP 175290 175290 96.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold1262 SAMTools SNP 227215 227215 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C93%2C0:99 scaffold1262 SAMTools SNP 229439 229439 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C18%2C41%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 232386 232386 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C1%2C12%3BMQ%3D48%3BFQ%3D190%3BPV4%3D0.44%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1262 SAMTools SNP 232583 232583 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C9%2C2%3BMQ%3D45%3BFQ%3D205%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C254:99 scaffold1262 SAMTools SNP 232601 232601 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C19%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 233148 233148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C57%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1262 SAMTools SNP 234481 234481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C57%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1262 SAMTools SNP 234556 234556 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1262 SAMTools SNP 234569 234569 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1262 SAMTools SNP 234877 234877 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1262 SAMTools SNP 236287 236287 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C35%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C109:99 scaffold1262 SAMTools SNP 240132 240132 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1262 SAMTools SNP 240878 240878 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0047%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1262 SAMTools SNP 241629 241629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.27%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1262 SAMTools SNP 243010 243010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 243038 243038 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.062%2C0.0049%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1262 SAMTools SNP 243058 243058 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C15%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C8e-33%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C248:51 scaffold1262 SAMTools SNP 251605 251605 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold1262 SAMTools SNP 299773 299773 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.066%2C0.35%2C1%2C9.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1262 SAMTools SNP 303073 303073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1262 SAMTools SNP 308874 308874 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C19%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.012%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1262 SAMTools SNP 308950 308950 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C0%2C19%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1262 SAMTools SNP 308958 308958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 309899 309899 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.076%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C212:92 scaffold1262 SAMTools SNP 310864 310864 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1262 SAMTools SNP 310879 310879 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold1262 SAMTools SNP 310919 310919 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.37%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1262 SAMTools SNP 310972 310972 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1262 SAMTools SNP 311186 311186 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1262 SAMTools SNP 311187 311187 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C3.6e-14;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C4%2C0:7 scaffold1262 SAMTools SNP 311270 311270 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C10%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.013%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 311816 311816 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C1%2C7%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.15%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1262 SAMTools SNP 311915 311915 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1262 SAMTools SNP 311918 311918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1262 SAMTools SNP 312131 312131 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 312852 312852 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C45%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1262 SAMTools SNP 312881 312881 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.5%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 313382 313382 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1262 SAMTools SNP 313715 313715 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C18%2C0:33 scaffold1262 SAMTools SNP 314741 314741 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D185%3BPV4%3D3.2e-06%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1262 SAMTools SNP 314759 314759 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.00019%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1262 SAMTools SNP 315182 315182 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 315184 315184 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.021%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1262 SAMTools SNP 316572 316572 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1262 SAMTools SNP 316596 316596 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1262 SAMTools SNP 316602 316602 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1262 SAMTools SNP 317250 317250 17.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1262 SAMTools SNP 317298 317298 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1262 SAMTools SNP 317785 317785 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1262 SAMTools SNP 318044 318044 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1262 SAMTools SNP 318356 318356 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1262 SAMTools SNP 318788 318788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1262 SAMTools SNP 319142 319142 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1262 SAMTools SNP 319501 319501 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 319510 319510 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 321945 321945 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C2.8e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C117:99 scaffold1262 SAMTools SNP 321977 321977 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1262 SAMTools SNP 323089 323089 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 341497 341497 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1262 SAMTools SNP 341529 341529 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0049%2C0.00015%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1262 SAMTools SNP 342250 342250 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1262 SAMTools SNP 342286 342286 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1262 SAMTools SNP 343169 343169 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1262 SAMTools SNP 354511 354511 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1262 SAMTools SNP 354560 354560 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C12%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0018%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1262 SAMTools SNP 355925 355925 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C2%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 355926 355926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 355954 355954 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C21%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C209:99 scaffold1262 SAMTools SNP 356083 356083 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 356411 356411 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 357374 357374 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 361532 361532 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1262 SAMTools SNP 362546 362546 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.22%2C0.012%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C185:44 scaffold1262 SAMTools SNP 362576 362576 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1262 SAMTools SNP 362702 362702 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.45%2C0.066%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1262 SAMTools SNP 364826 364826 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1262 SAMTools SNP 365018 365018 28.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold1262 SAMTools SNP 365025 365025 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4.2e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C74:49 scaffold1262 SAMTools SNP 365082 365082 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1262 SAMTools SNP 367762 367762 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.023%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1262 SAMTools SNP 367768 367768 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1262 SAMTools SNP 367834 367834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 368688 368688 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0.0034%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold1262 SAMTools SNP 372009 372009 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1262 SAMTools SNP 372703 372703 41.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1262 SAMTools SNP 372817 372817 77.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1262 SAMTools SNP 372941 372941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1262 SAMTools SNP 374655 374655 18.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1262 SAMTools SNP 380932 380932 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C0.023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1262 SAMTools SNP 380992 380992 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C124:93 scaffold1262 SAMTools SNP 382254 382254 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1262 SAMTools SNP 383251 383251 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold1262 SAMTools SNP 383254 383254 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C123:99 scaffold1262 SAMTools SNP 383633 383633 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1262 SAMTools SNP 383685 383685 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C15:18 scaffold1262 SAMTools SNP 383775 383775 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1262 SAMTools SNP 384295 384295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1262 SAMTools SNP 384322 384322 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C240:99 scaffold1262 SAMTools SNP 384364 384364 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C17%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.19%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C118:99 scaffold1262 SAMTools SNP 384379 384379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1262 SAMTools SNP 384734 384734 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 384803 384803 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C152:99 scaffold1262 SAMTools SNP 384809 384809 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1262 SAMTools SNP 387114 387114 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C127:99 scaffold1262 SAMTools SNP 387162 387162 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C150:95 scaffold1262 SAMTools SNP 387766 387766 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1262 SAMTools SNP 388977 388977 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1262 SAMTools SNP 389595 389595 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1262 SAMTools SNP 391987 391987 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1262 SAMTools SNP 392035 392035 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1262 SAMTools SNP 392534 392534 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.039%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C241:99 scaffold1262 SAMTools SNP 394976 394976 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C22%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1262 SAMTools SNP 395555 395555 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1262 SAMTools SNP 395561 395561 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1262 SAMTools SNP 396506 396506 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1262 SAMTools SNP 396561 396561 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1262 SAMTools SNP 397020 397020 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1262 SAMTools SNP 397284 397284 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1262 SAMTools SNP 397731 397731 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1262 SAMTools SNP 397833 397833 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 397839 397839 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 397848 397848 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.085%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C154:99 scaffold1262 SAMTools SNP 398422 398422 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1262 SAMTools SNP 398429 398429 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1262 SAMTools SNP 399296 399296 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1262 SAMTools SNP 399470 399470 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 399778 399778 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 400185 400185 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.53%2C0.33%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1262 SAMTools SNP 400331 400331 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.015%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 400385 400385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 400634 400634 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C34%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1262 SAMTools SNP 401704 401704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 401749 401749 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.43%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1262 SAMTools SNP 401772 401772 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1262 SAMTools SNP 402335 402335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C3%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1262 SAMTools SNP 402409 402409 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1262 SAMTools SNP 402968 402968 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1262 SAMTools SNP 403079 403079 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1262 SAMTools SNP 403842 403842 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C229:99 scaffold1262 SAMTools SNP 404058 404058 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1262 SAMTools SNP 404110 404110 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.012%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C176:95 scaffold1262 SAMTools SNP 405564 405564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C10%2C26%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.62%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold1262 SAMTools SNP 405585 405585 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C2%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1262 SAMTools SNP 405653 405653 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C45%2C0:87 scaffold1262 SAMTools SNP 405695 405695 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1262 SAMTools SNP 405745 405745 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold1262 SAMTools SNP 405869 405869 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1262 SAMTools SNP 405889 405889 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1262 SAMTools SNP 408026 408026 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 412353 412353 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1262 SAMTools SNP 412926 412926 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C19%2C13%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.015%2C3.2e-65%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1262 SAMTools SNP 413101 413101 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C122%2C0%2C97%3BMQ%3D50%3BFQ%3D22%3BPV4%3D5.8e-08%2C4.6e-53%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1262 SAMTools SNP 413442 413442 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1262 SAMTools SNP 413747 413747 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1262 SAMTools SNP 413762 413762 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 413792 413792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 414038 414038 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1262 SAMTools SNP 414241 414241 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D34.2%3BPV4%3D1%2C0.0024%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C62:64 scaffold1262 SAMTools SNP 414248 414248 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1262 SAMTools SNP 414269 414269 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 414278 414278 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1262 SAMTools SNP 414554 414554 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold1262 SAMTools SNP 414904 414904 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C221:99 scaffold1262 SAMTools SNP 414925 414925 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0022%2C0.029%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1262 SAMTools SNP 415714 415714 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1262 SAMTools SNP 415738 415738 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1262 SAMTools SNP 415774 415774 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C27%2C0:51 scaffold1262 SAMTools SNP 415854 415854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1262 SAMTools SNP 415864 415864 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C3%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.13%2C0.02%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1262 SAMTools SNP 415918 415918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C59%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1262 SAMTools SNP 416380 416380 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0017%2C0.058%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1262 SAMTools SNP 416452 416452 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C89%2C3%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.38%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1262 SAMTools SNP 416642 416642 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C82%2C16%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1262 SAMTools SNP 416663 416663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C26%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00079%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 416690 416690 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C28%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1262 SAMTools SNP 417040 417040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C14%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 417466 417466 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C248:99 scaffold1262 SAMTools SNP 419615 419615 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C56%2C39%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.029%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 420001 420001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-06%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 420019 420019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1262 SAMTools SNP 421252 421252 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 422154 422154 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C154:99 scaffold1262 SAMTools SNP 423206 423206 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1262 SAMTools SNP 426274 426274 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1262 SAMTools SNP 426301 426301 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold1262 SAMTools SNP 426310 426310 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.22%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1262 SAMTools SNP 427938 427938 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold1262 SAMTools SNP 428939 428939 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1262 SAMTools SNP 447831 447831 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1262 SAMTools SNP 447932 447932 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1262 SAMTools SNP 480673 480673 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 513922 513922 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.46%2C0.0012%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C217:33 scaffold1262 SAMTools SNP 527055 527055 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1262 SAMTools SNP 527152 527152 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1262 SAMTools SNP 534199 534199 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1262 SAMTools SNP 534210 534210 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.29%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1262 SAMTools SNP 534548 534548 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1262 SAMTools SNP 537079 537079 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1262 SAMTools SNP 537397 537397 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold1262 SAMTools SNP 537724 537724 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C19%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.3%2C4.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1262 SAMTools SNP 538393 538393 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1262 SAMTools SNP 538793 538793 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.062%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1262 SAMTools SNP 538818 538818 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C39%2C0:75 scaffold1262 SAMTools SNP 538876 538876 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C8%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.49%2C3.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1262 SAMTools SNP 542020 542020 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1262 SAMTools SNP 542052 542052 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1264 SAMTools SNP 382 382 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1264 SAMTools SNP 434 434 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1264 SAMTools SNP 933 933 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold1264 SAMTools SNP 1447 1447 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C49%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.58%2C2.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1264 SAMTools SNP 1849 1849 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1264 SAMTools SNP 10313 10313 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 10351 10351 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 10563 10563 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 10628 10628 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1264 SAMTools SNP 10770 10770 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1264 SAMTools SNP 10827 10827 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C24%2C0:45 scaffold1264 SAMTools SNP 11723 11723 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 11745 11745 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 12178 12178 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1264 SAMTools SNP 12224 12224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1264 SAMTools SNP 13170 13170 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 38982 38982 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 39918 39918 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 39950 39950 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 39965 39965 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 57229 57229 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 57248 57248 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 58327 58327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1264 SAMTools SNP 58626 58626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1264 SAMTools SNP 58766 58766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1264 SAMTools SNP 60650 60650 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 60695 60695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1264 SAMTools SNP 60949 60949 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 61140 61140 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1264 SAMTools SNP 61784 61784 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 61790 61790 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 62724 62724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1264 SAMTools SNP 63008 63008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1264 SAMTools SNP 63200 63200 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1264 SAMTools SNP 64636 64636 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1264 SAMTools SNP 64673 64673 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1264 SAMTools SNP 66067 66067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1264 SAMTools SNP 66474 66474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C31%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1264 SAMTools SNP 74604 74604 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1264 SAMTools SNP 74936 74936 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 74944 74944 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1264 SAMTools SNP 75708 75708 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 76161 76161 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1264 SAMTools SNP 76206 76206 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1264 SAMTools SNP 76504 76504 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.089%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold1264 SAMTools SNP 76909 76909 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1264 SAMTools SNP 76964 76964 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1264 SAMTools SNP 77078 77078 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 77222 77222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 77326 77326 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 77924 77924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 77953 77953 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1264 SAMTools SNP 77992 77992 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.45%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold1264 SAMTools SNP 78375 78375 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1264 SAMTools SNP 78455 78455 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1264 SAMTools SNP 78462 78462 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1264 SAMTools SNP 78921 78921 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1264 SAMTools SNP 78946 78946 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.45%2C0.073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1264 SAMTools SNP 79027 79027 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1264 SAMTools SNP 79260 79260 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold1264 SAMTools SNP 79747 79747 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold1264 SAMTools SNP 80107 80107 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C7.6e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C197:51 scaffold1264 SAMTools SNP 80229 80229 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.17%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C156:99 scaffold1264 SAMTools SNP 80354 80354 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C134:99 scaffold1264 SAMTools SNP 81487 81487 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold1264 SAMTools SNP 81511 81511 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1264 SAMTools SNP 82302 82302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 82320 82320 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1264 SAMTools SNP 82520 82520 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1264 SAMTools SNP 82528 82528 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 82657 82657 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1264 SAMTools SNP 82705 82705 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1264 SAMTools SNP 86854 86854 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.034%2C0.057%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1264 SAMTools SNP 86868 86868 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.033%2C0.31%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1264 SAMTools SNP 87097 87097 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold1264 SAMTools SNP 87514 87514 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1264 SAMTools SNP 87543 87543 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 87601 87601 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 87636 87636 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 88509 88509 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold1264 SAMTools SNP 88587 88587 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1264 SAMTools SNP 88639 88639 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1264 SAMTools SNP 88655 88655 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1264 SAMTools SNP 98140 98140 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1264 SAMTools SNP 98175 98175 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1264 SAMTools SNP 98937 98937 47.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1264 SAMTools SNP 99792 99792 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1264 SAMTools SNP 100199 100199 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1264 SAMTools SNP 100255 100255 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 100272 100272 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 100291 100291 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 101059 101059 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1264 SAMTools SNP 101637 101637 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 104869 104869 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 104902 104902 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1264 SAMTools SNP 115031 115031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D41%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1264 SAMTools SNP 116599 116599 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1264 SAMTools SNP 121901 121901 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C30%2C0:57 scaffold1264 SAMTools SNP 122284 122284 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1264 SAMTools SNP 123438 123438 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C10%2C6%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold1264 SAMTools SNP 123463 123463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C10%2C10%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.39%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1264 SAMTools SNP 130025 130025 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1264 SAMTools SNP 130032 130032 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold1264 SAMTools SNP 130096 130096 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1264 SAMTools SNP 131645 131645 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C207:63 scaffold1264 SAMTools SNP 131667 131667 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1264 SAMTools SNP 135240 135240 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 139885 139885 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1264 SAMTools SNP 146891 146891 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1264 SAMTools SNP 166931 166931 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1264 SAMTools SNP 166951 166951 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1266 SAMTools SNP 3364 3364 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 14680 14680 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1266 SAMTools SNP 20951 20951 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1266 SAMTools SNP 23849 23849 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 23861 23861 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 23911 23911 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 27240 27240 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 27294 27294 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1266 SAMTools SNP 27686 27686 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1266 SAMTools SNP 27707 27707 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 27760 27760 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1266 SAMTools SNP 27918 27918 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1266 SAMTools SNP 28116 28116 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1266 SAMTools SNP 28167 28167 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold1266 SAMTools SNP 28777 28777 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1266 SAMTools SNP 28840 28840 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1266 SAMTools SNP 29124 29124 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold1266 SAMTools SNP 29172 29172 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1266 SAMTools SNP 31918 31918 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold1266 SAMTools SNP 31930 31930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold1266 SAMTools SNP 32136 32136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1266 SAMTools SNP 32562 32562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.045%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 32622 32622 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1266 SAMTools SNP 33441 33441 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1266 SAMTools SNP 88442 88442 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1266 SAMTools SNP 88627 88627 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1266 SAMTools SNP 88902 88902 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C46%2C26%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 89563 89563 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C58%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1266 SAMTools SNP 90915 90915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C42%2C13%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 91543 91543 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C28%2C28%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 91783 91783 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C55%2C19%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 92186 92186 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1266 SAMTools SNP 92203 92203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C38%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1266 SAMTools SNP 92348 92348 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C30%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1266 SAMTools SNP 92552 92552 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C2%2C42%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1266 SAMTools SNP 92579 92579 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C18%2C28%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0026%2C0.35%2C1%2C1.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1266 SAMTools SNP 94170 94170 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C38%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1266 SAMTools SNP 95091 95091 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C68%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1266 SAMTools SNP 95315 95315 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C130:99 scaffold1266 SAMTools SNP 95357 95357 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 95369 95369 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1266 SAMTools SNP 95668 95668 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1266 SAMTools SNP 95692 95692 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1266 SAMTools SNP 95882 95882 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1267 SAMTools SNP 3370 3370 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 22975 22975 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C74:77 scaffold1267 SAMTools SNP 23506 23506 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 23679 23679 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 23811 23811 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1267 SAMTools SNP 25997 25997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 26794 26794 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C15%2C0:27 scaffold1267 SAMTools SNP 27263 27263 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 29181 29181 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 30248 30248 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1267 SAMTools SNP 30800 30800 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1267 SAMTools SNP 32114 32114 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1267 SAMTools SNP 32155 32155 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1267 SAMTools SNP 32331 32331 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1267 SAMTools SNP 32352 32352 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1267 SAMTools SNP 33215 33215 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1267 SAMTools SNP 33835 33835 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1267 SAMTools SNP 34251 34251 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1267 SAMTools SNP 36067 36067 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1267 SAMTools SNP 36373 36373 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0071%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1267 SAMTools SNP 36732 36732 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.2%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold1267 SAMTools SNP 36839 36839 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1267 SAMTools SNP 36856 36856 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1267 SAMTools SNP 37282 37282 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1267 SAMTools SNP 53155 53155 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 53740 53740 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1267 SAMTools SNP 62932 62932 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1267 SAMTools SNP 76247 76247 77.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C15%2C0:27 scaffold1267 SAMTools SNP 76589 76589 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C162:99 scaffold1267 SAMTools SNP 77286 77286 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.062%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C204:99 scaffold1267 SAMTools SNP 77337 77337 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 77473 77473 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1267 SAMTools SNP 77517 77517 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 78056 78056 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1267 SAMTools SNP 79336 79336 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1267 SAMTools SNP 79351 79351 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1267 SAMTools SNP 92132 92132 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1267 SAMTools SNP 92192 92192 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1267 SAMTools SNP 92629 92629 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1267 SAMTools SNP 92632 92632 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1267 SAMTools SNP 92644 92644 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1267 SAMTools SNP 109287 109287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1267 SAMTools SNP 109305 109305 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1267 SAMTools SNP 109332 109332 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1267 SAMTools SNP 110822 110822 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C28%2C31%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1.5e-06%2C3.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1267 SAMTools SNP 110866 110866 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C41%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1267 SAMTools SNP 110981 110981 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1267 SAMTools SNP 111152 111152 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C51%2C0:99 scaffold1267 SAMTools SNP 114908 114908 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1267 SAMTools SNP 115242 115242 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.048%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C78:52 scaffold1267 SAMTools SNP 115256 115256 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1267 SAMTools SNP 124703 124703 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1267 SAMTools SNP 128575 128575 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C72%2C0:99 scaffold1267 SAMTools SNP 129317 129317 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1267 SAMTools SNP 130246 130246 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 130247 130247 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 130271 130271 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1267 SAMTools SNP 131530 131530 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold1267 SAMTools SNP 131553 131553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 132079 132079 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 132871 132871 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1267 SAMTools SNP 132898 132898 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1267 SAMTools SNP 133146 133146 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1267 SAMTools SNP 133192 133192 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 164157 164157 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1267 SAMTools SNP 166190 166190 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C1%3BMQ%3D49%3BFQ%3D54%3BPV4%3D0.23%2C0.0095%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C235:84 scaffold1267 SAMTools SNP 166739 166739 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C35%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1267 SAMTools SNP 169905 169905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 170809 170809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C91%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 183425 183425 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 183958 183958 21.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1267 SAMTools SNP 184039 184039 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.32%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1267 SAMTools SNP 184624 184624 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D40%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1267 SAMTools SNP 185715 185715 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C8%2C2%3BMQ%3D48%3BFQ%3D34%3BPV4%3D0.002%2C1.2e-18%2C0.47%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1267 SAMTools SNP 185751 185751 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C6%2C11%3BMQ%3D46%3BFQ%3D162%3BPV4%3D0.049%2C0.15%2C0.0041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1267 SAMTools SNP 185770 185770 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D42%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1267 SAMTools SNP 185787 185787 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C7%3BMQ%3D42%3BFQ%3D175%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C222:99 scaffold1267 SAMTools SNP 218193 218193 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1267 SAMTools SNP 250185 250185 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1267 SAMTools SNP 282755 282755 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 285279 285279 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1267 SAMTools SNP 285337 285337 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1267 SAMTools SNP 286243 286243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 287059 287059 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 287067 287067 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 373892 373892 22.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1267 SAMTools SNP 374060 374060 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C63%2C0:99 scaffold1267 SAMTools SNP 374066 374066 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C60%2C0:99 scaffold1267 SAMTools SNP 375122 375122 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.002%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold1267 SAMTools SNP 375245 375245 17.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1267 SAMTools SNP 377234 377234 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 377243 377243 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 379326 379326 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1267 SAMTools SNP 379340 379340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 384752 384752 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C14%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.41%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C247:99 scaffold1267 SAMTools SNP 385187 385187 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C60%2C0:99 scaffold1267 SAMTools SNP 385497 385497 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.22%2C3.9e-13%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C86:89 scaffold1267 SAMTools SNP 385771 385771 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1267 SAMTools SNP 386843 386843 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1267 SAMTools SNP 386887 386887 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 416282 416282 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 416299 416299 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 421519 421519 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 421585 421585 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 422559 422559 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 473676 473676 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1267 SAMTools SNP 490841 490841 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1267 SAMTools SNP 498011 498011 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C96%2C0:99 scaffold1267 SAMTools SNP 498072 498072 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C27%2C0:51 scaffold1267 SAMTools SNP 498279 498279 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C45%2C0:87 scaffold1267 SAMTools SNP 498358 498358 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C51%2C0:97 scaffold1267 SAMTools SNP 498460 498460 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C48%2C0:77 scaffold1267 SAMTools SNP 523438 523438 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1267 SAMTools SNP 526802 526802 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 526809 526809 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 529765 529765 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C66%2C0:99 scaffold1267 SAMTools SNP 529873 529873 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.002%2C0.018%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C201:81 scaffold1267 SAMTools SNP 529894 529894 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.05%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1267 SAMTools SNP 532090 532090 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 533710 533710 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 535416 535416 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1267 SAMTools SNP 535486 535486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1267 SAMTools SNP 537072 537072 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1267 SAMTools SNP 537116 537116 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C39%2C0:75 scaffold1267 SAMTools SNP 538819 538819 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1267 SAMTools SNP 540865 540865 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C102:99 scaffold1267 SAMTools SNP 544002 544002 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1267 SAMTools SNP 544017 544017 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1267 SAMTools SNP 546477 546477 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1267 SAMTools SNP 551860 551860 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D456%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D362%2C38%2C22%2C33%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1.7e-16%2C8.1e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1267 SAMTools SNP 551960 551960 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C71%2C270%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.21%2C1.4e-39%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C255%2C0:99 scaffold1267 SAMTools SNP 554835 554835 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D936%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D394%2C121%2C369%2C46%3BMQ%3D46%3BFQ%3D225%3BPV4%3D8e-07%2C1.3e-29%2C0.051%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 554928 554928 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1653%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D589%2C279%2C531%2C252%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0%2C0.13%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 555182 555182 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1672%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C265%2C1394%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C0.39%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 555283 555283 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C232%2C192%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 559210 559210 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D549%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C133%2C112%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 559708 559708 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C78%2C105%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 561273 561273 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C71%2C108%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 561285 561285 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C111%2C37%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 564457 564457 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1267 SAMTools SNP 564636 564636 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1267 SAMTools SNP 565215 565215 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1267 SAMTools SNP 567106 567106 74.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold1267 SAMTools SNP 594785 594785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 595698 595698 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 595761 595761 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 604528 604528 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1267 SAMTools SNP 604681 604681 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.46%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C169:94 scaffold1267 SAMTools SNP 605399 605399 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C15%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.051%2C2.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C86:62 scaffold1267 SAMTools SNP 609901 609901 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1267 SAMTools SNP 609923 609923 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 630886 630886 50.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold1267 SAMTools SNP 630971 630971 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.66%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1267 SAMTools SNP 632140 632140 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 632182 632182 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D46%3BFQ%3D95%3BPV4%3D1%2C1%2C0.34%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C230:99 scaffold1267 SAMTools SNP 635960 635960 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C218:99 scaffold1267 SAMTools SNP 635972 635972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C7%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.72%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 635975 635975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C9%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.46%2C1%2C0.41%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 637676 637676 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C234:96 scaffold1267 SAMTools SNP 637697 637697 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1267 SAMTools SNP 637740 637740 62.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C6%2C0:10 scaffold1267 SAMTools SNP 641596 641596 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1267 SAMTools SNP 641626 641626 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.14%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold1267 SAMTools SNP 641639 641639 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1267 SAMTools SNP 641665 641665 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1267 SAMTools SNP 641720 641720 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1267 SAMTools SNP 641729 641729 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.62%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C35:38 scaffold1267 SAMTools SNP 642977 642977 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1267 SAMTools SNP 643265 643265 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C45%2C5%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 645083 645083 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0042%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C146:30 scaffold1267 SAMTools SNP 647814 647814 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1267 SAMTools SNP 647816 647816 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1267 SAMTools SNP 647831 647831 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 647846 647846 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C40:43 scaffold1267 SAMTools SNP 678814 678814 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1267 SAMTools SNP 683766 683766 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C25%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1267 SAMTools SNP 683838 683838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C53%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1267 SAMTools SNP 688220 688220 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 690648 690648 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C6%2C12%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.36%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1267 SAMTools SNP 693794 693794 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1267 SAMTools SNP 695506 695506 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold1267 SAMTools SNP 697289 697289 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1267 SAMTools SNP 697682 697682 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1267 SAMTools SNP 700184 700184 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold1267 SAMTools SNP 704270 704270 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1267 SAMTools SNP 705945 705945 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.24%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C218:72 scaffold1267 SAMTools SNP 706041 706041 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C9.5e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C74:51 scaffold1267 SAMTools SNP 706909 706909 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C210:30 scaffold1267 SAMTools SNP 707334 707334 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.54%2C7.2e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1267 SAMTools SNP 708332 708332 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C14%2C10%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.52%2C5.1e-30%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1267 SAMTools SNP 712443 712443 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C73%2C0%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D1%2C0.15%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C44:47 scaffold1267 SAMTools SNP 712491 712491 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C0%2C11%2C0%3BMQ%3D49%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C188:72 scaffold1267 SAMTools SNP 713906 713906 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C17%2C11%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.5%2C0.12%2C0.08%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 727730 727730 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C163%2C0:99 scaffold1267 SAMTools SNP 727917 727917 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1267 SAMTools SNP 729258 729258 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C30%2C0:56 scaffold1267 SAMTools SNP 733094 733094 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C11%2C0%3BMQ%3D46%3BFQ%3D15.1%3BPV4%3D2.9e-11%2C2e-11%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C241:44 scaffold1267 SAMTools SNP 740499 740499 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1267 SAMTools SNP 742568 742568 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1267 SAMTools SNP 743839 743839 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 744764 744764 50.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D39%3BFQ%3D-13.2%3BPV4%3D0.2%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C14:17 scaffold1267 SAMTools SNP 744774 744774 59.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1267 SAMTools SNP 745923 745923 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 745946 745946 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 750587 750587 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1267 SAMTools SNP 750668 750668 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1267 SAMTools SNP 750947 750947 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.48%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C79:82 scaffold1267 SAMTools SNP 751019 751019 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C98:99 scaffold1267 SAMTools SNP 751988 751988 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1267 SAMTools SNP 751997 751997 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.24%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1267 SAMTools SNP 752087 752087 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 752444 752444 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C25%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 754344 754344 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1267 SAMTools SNP 755427 755427 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1267 SAMTools SNP 756330 756330 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1267 SAMTools SNP 756507 756507 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D56.3%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C85:86 scaffold1267 SAMTools SNP 757485 757485 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D35%3BFQ%3D48%3BPV4%3D0.3%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C104:78 scaffold1267 SAMTools SNP 757491 757491 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C4%2C0%3BMQ%3D45%3BFQ%3D31%3BPV4%3D0.26%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1267 SAMTools SNP 758242 758242 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1267 SAMTools SNP 758244 758244 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1267 SAMTools SNP 758247 758247 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1267 SAMTools SNP 758850 758850 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 758902 758902 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1267 SAMTools SNP 759823 759823 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1267 SAMTools SNP 759826 759826 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1267 SAMTools SNP 760078 760078 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1267 SAMTools SNP 760092 760092 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1267 SAMTools SNP 760323 760323 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1267 SAMTools SNP 760354 760354 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1267 SAMTools SNP 760440 760440 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C74:77 scaffold1267 SAMTools SNP 766207 766207 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 766490 766490 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 766522 766522 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 768203 768203 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1267 SAMTools SNP 768305 768305 3.55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1267 SAMTools SNP 768604 768604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1267 SAMTools SNP 768664 768664 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1267 SAMTools SNP 786914 786914 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1267 SAMTools SNP 787131 787131 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1267 SAMTools SNP 798147 798147 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1267 SAMTools SNP 863335 863335 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1267 SAMTools SNP 863444 863444 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1267 SAMTools SNP 863963 863963 47.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1267 SAMTools SNP 864277 864277 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1267 SAMTools SNP 874888 874888 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1267 SAMTools SNP 875368 875368 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1267 SAMTools SNP 875419 875419 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.077%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1267 SAMTools SNP 876282 876282 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1267 SAMTools SNP 876369 876369 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C27:99 scaffold1267 SAMTools SNP 876372 876372 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1267 SAMTools SNP 877198 877198 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1267 SAMTools SNP 878021 878021 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1267 SAMTools SNP 878039 878039 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1267 SAMTools SNP 911475 911475 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1267 SAMTools SNP 912472 912472 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1267 SAMTools SNP 915629 915629 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C21%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1267 SAMTools SNP 915669 915669 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.3%2C1.3e-05%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1267 SAMTools SNP 926144 926144 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.62%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1267 SAMTools SNP 926483 926483 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1267 SAMTools SNP 927199 927199 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1267 SAMTools SNP 927231 927231 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C27%2C0:51 scaffold1267 SAMTools SNP 928477 928477 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1267 SAMTools SNP 928498 928498 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1267 SAMTools SNP 928580 928580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C222%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 928796 928796 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C15%2C54%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 928821 928821 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C53%2C36%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 928887 928887 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C116%2C4%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 929251 929251 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C2%2C35%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.5%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1267 SAMTools SNP 929528 929528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 931563 931563 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1267 SAMTools SNP 932260 932260 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 932265 932265 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.063%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1267 SAMTools SNP 932266 932266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1267 SAMTools SNP 932276 932276 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1267 SAMTools SNP 932283 932283 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C236:99 scaffold1267 SAMTools SNP 932766 932766 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.27%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1267 SAMTools SNP 932829 932829 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1267 SAMTools SNP 932895 932895 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1267 SAMTools SNP 935957 935957 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D181%2C36%2C47%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 939241 939241 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C86%2C0%2C199%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1267 SAMTools SNP 983368 983368 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1267 SAMTools SNP 985059 985059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C246%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 986028 986028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C98%2C42%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 989027 989027 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C1%2C46%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C3.6e-15%2C1%2C5.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1267 SAMTools SNP 990459 990459 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1267 SAMTools SNP 1024651 1024651 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1267 SAMTools SNP 1024804 1024804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2830%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C1135%2C1309%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1267 SAMTools SNP 1030579 1030579 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D887%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C403%2C73%2C220%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C5.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1267 SAMTools SNP 1030666 1030666 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D718%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C352%2C0%2C349%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1267 SAMTools SNP 1042982 1042982 19.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold1267 SAMTools SNP 1043066 1043066 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C27%2C0:51 scaffold1267 SAMTools SNP 1048262 1048262 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1267 SAMTools SNP 1049948 1049948 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold127 SAMTools SNP 6604 6604 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 6724 6724 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 13587 13587 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold127 SAMTools SNP 16483 16483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 16674 16674 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold127 SAMTools SNP 16739 16739 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 35278 35278 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 41313 41313 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold127 SAMTools SNP 43160 43160 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold127 SAMTools SNP 47376 47376 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 48922 48922 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold127 SAMTools SNP 49196 49196 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold127 SAMTools SNP 49234 49234 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold127 SAMTools SNP 50033 50033 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold127 SAMTools SNP 50061 50061 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold127 SAMTools SNP 58077 58077 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold127 SAMTools SNP 58624 58624 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold127 SAMTools SNP 58686 58686 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold127 SAMTools SNP 59195 59195 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold127 SAMTools SNP 69250 69250 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold127 SAMTools SNP 70575 70575 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 70606 70606 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 77021 77021 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold127 SAMTools SNP 89672 89672 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C15%2C0:27 scaffold127 SAMTools SNP 90609 90609 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold127 SAMTools SNP 92152 92152 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C58%2C55%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.042%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold127 SAMTools SNP 94724 94724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold127 SAMTools SNP 94764 94764 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold127 SAMTools SNP 95002 95002 43.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1272 SAMTools SNP 13728 13728 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold1272 SAMTools SNP 13732 13732 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1272 SAMTools SNP 14920 14920 49.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1272 SAMTools SNP 58605 58605 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold1272 SAMTools SNP 59529 59529 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.2e-08%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1272 SAMTools SNP 59547 59547 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1272 SAMTools SNP 59586 59586 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1272 SAMTools SNP 59619 59619 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.21%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1272 SAMTools SNP 60091 60091 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.014%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1272 SAMTools SNP 60107 60107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1272 SAMTools SNP 60606 60606 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.53%2C1%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1272 SAMTools SNP 62251 62251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1272 SAMTools SNP 63753 63753 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1272 SAMTools SNP 70061 70061 110 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C119%2C107%2C145%2C0%2C136:21 scaffold1272 SAMTools SNP 70091 70091 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C30%2C20%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1272 SAMTools SNP 71032 71032 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C50%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1272 SAMTools SNP 71609 71609 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.44%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1272 SAMTools SNP 78536 78536 31.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold1272 SAMTools SNP 99842 99842 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1272 SAMTools SNP 120188 120188 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 20235 20235 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 21974 21974 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1276 SAMTools SNP 22017 22017 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 27184 27184 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 27438 27438 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1276 SAMTools SNP 30910 30910 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 31542 31542 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1276 SAMTools SNP 31706 31706 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1276 SAMTools SNP 33289 33289 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 37383 37383 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 37384 37384 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 41133 41133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 41265 41265 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 41304 41304 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 42062 42062 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 42083 42083 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 42531 42531 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1276 SAMTools SNP 45416 45416 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1276 SAMTools SNP 58977 58977 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1276 SAMTools SNP 58981 58981 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1276 SAMTools SNP 61726 61726 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0:51 scaffold1276 SAMTools SNP 65187 65187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1276 SAMTools SNP 65191 65191 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C57%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1276 SAMTools SNP 65251 65251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1276 SAMTools SNP 67839 67839 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 760 760 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 14178 14178 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1277 SAMTools SNP 14403 14403 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C6%3BMQ%3D49%3BFQ%3D130%3BPV4%3D0.53%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1277 SAMTools SNP 15183 15183 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1277 SAMTools SNP 41873 41873 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1277 SAMTools SNP 42483 42483 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D48%3BFQ%3D142%3BPV4%3D1%2C0.15%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C184:99 scaffold1277 SAMTools SNP 42507 42507 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C7%3BMQ%3D48%3BFQ%3D153%3BPV4%3D1%2C0.11%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C182:99 scaffold1277 SAMTools SNP 42513 42513 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D48%3BFQ%3D153%3BPV4%3D1%2C0.45%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C185:99 scaffold1277 SAMTools SNP 45223 45223 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1277 SAMTools SNP 46309 46309 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1277 SAMTools SNP 46338 46338 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1277 SAMTools SNP 46450 46450 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 51482 51482 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 119879 119879 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 120181 120181 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 120623 120623 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 149537 149537 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1277 SAMTools SNP 149558 149558 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1277 SAMTools SNP 149869 149869 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1277 SAMTools SNP 150156 150156 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1277 SAMTools SNP 150159 150159 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1277 SAMTools SNP 150180 150180 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1277 SAMTools SNP 150315 150315 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1277 SAMTools SNP 150626 150626 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.61%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1277 SAMTools SNP 150649 150649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C19%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.64%2C0.25%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1277 SAMTools SNP 151071 151071 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.22%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1277 SAMTools SNP 151422 151422 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold1277 SAMTools SNP 152794 152794 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1277 SAMTools SNP 152904 152904 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C124:99 scaffold1277 SAMTools SNP 153535 153535 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1277 SAMTools SNP 153552 153552 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1277 SAMTools SNP 153795 153795 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1277 SAMTools SNP 153922 153922 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 153932 153932 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1277 SAMTools SNP 153946 153946 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1277 SAMTools SNP 154250 154250 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1277 SAMTools SNP 154262 154262 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1277 SAMTools SNP 160378 160378 13.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1277 SAMTools SNP 170683 170683 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1277 SAMTools SNP 170701 170701 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1277 SAMTools SNP 195978 195978 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1277 SAMTools SNP 196449 196449 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1277 SAMTools SNP 200184 200184 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1279 SAMTools SNP 2363 2363 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1279 SAMTools SNP 14004 14004 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1279 SAMTools SNP 23050 23050 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1279 SAMTools SNP 38209 38209 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1279 SAMTools SNP 38216 38216 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1279 SAMTools SNP 41984 41984 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1279 SAMTools SNP 42127 42127 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1279 SAMTools SNP 44883 44883 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C252:99 scaffold1279 SAMTools SNP 44895 44895 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C252:99 scaffold1279 SAMTools SNP 51427 51427 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1279 SAMTools SNP 51432 51432 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.092%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1279 SAMTools SNP 51437 51437 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1279 SAMTools SNP 51886 51886 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1279 SAMTools SNP 54076 54076 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1279 SAMTools SNP 64306 64306 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1279 SAMTools SNP 65640 65640 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1279 SAMTools SNP 66004 66004 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.16%2C6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C209:52 scaffold1279 SAMTools SNP 66279 66279 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold1279 SAMTools SNP 67350 67350 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1279 SAMTools SNP 67375 67375 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1279 SAMTools SNP 74551 74551 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C74%2C25%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1.6e-14%2C3.5e-35%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1279 SAMTools SNP 74552 74552 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C40%2C16%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 74681 74681 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C18%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 75771 75771 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1279 SAMTools SNP 76770 76770 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1279 SAMTools SNP 77073 77073 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.34%2C0.00046%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1279 SAMTools SNP 77583 77583 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C53%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 77649 77649 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C5%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.1%2C0.00015%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1279 SAMTools SNP 78135 78135 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1279 SAMTools SNP 78176 78176 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1279 SAMTools SNP 78177 78177 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1279 SAMTools SNP 78305 78305 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1279 SAMTools SNP 78548 78548 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 78659 78659 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C15%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1279 SAMTools SNP 79053 79053 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C111%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C8.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C255%2C0:99 scaffold1279 SAMTools SNP 79110 79110 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.082%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1279 SAMTools SNP 79212 79212 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C45%2C0:87 scaffold1279 SAMTools SNP 79851 79851 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C13%2C5%2C20%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D5.8e-09%2C1.7e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1279 SAMTools SNP 79932 79932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C44%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1279 SAMTools SNP 81421 81421 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C70%2C10%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1.2e-05%2C0.13%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1279 SAMTools SNP 81457 81457 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C71%2C2%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1279 SAMTools SNP 81974 81974 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.27%2C0.45%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1279 SAMTools SNP 82098 82098 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1279 SAMTools SNP 82109 82109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1279 SAMTools SNP 82443 82443 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 83375 83375 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.081%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 83712 83712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1279 SAMTools SNP 83724 83724 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold1279 SAMTools SNP 83859 83859 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1279 SAMTools SNP 84056 84056 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1279 SAMTools SNP 84065 84065 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1279 SAMTools SNP 84711 84711 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C29%2C84%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1279 SAMTools SNP 84747 84747 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C97%2C2%2C133%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00044%2C9.8e-163%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1279 SAMTools SNP 84905 84905 14.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1279 SAMTools SNP 86764 86764 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.58%2C7.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1279 SAMTools SNP 86908 86908 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.3e-11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1279 SAMTools SNP 87205 87205 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1279 SAMTools SNP 87211 87211 96 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C14%2C37%2C100%2C0%2C126:26 scaffold1279 SAMTools SNP 87673 87673 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold1279 SAMTools SNP 87754 87754 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.023%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C245:99 scaffold1279 SAMTools SNP 87896 87896 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.35%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1279 SAMTools SNP 87926 87926 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C10%2C19%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.45%2C2.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1279 SAMTools SNP 88003 88003 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.43%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1279 SAMTools SNP 88567 88567 18.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold128 SAMTools SNP 7073 7073 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 19495 19495 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 76585 76585 42.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold128 SAMTools SNP 76621 76621 17.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold128 SAMTools SNP 76913 76913 25.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold128 SAMTools SNP 77035 77035 82.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold128 SAMTools SNP 77635 77635 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold128 SAMTools SNP 77701 77701 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 79374 79374 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold128 SAMTools SNP 84350 84350 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 119905 119905 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C7.5e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C107:62 scaffold128 SAMTools SNP 147906 147906 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold128 SAMTools SNP 151258 151258 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold128 SAMTools SNP 177421 177421 30.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold128 SAMTools SNP 177537 177537 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 178896 178896 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold128 SAMTools SNP 231427 231427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 231434 231434 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold128 SAMTools SNP 231622 231622 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold128 SAMTools SNP 245611 245611 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C29%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C6.3e-35%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 245665 245665 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C41%2C67%2C17%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.011%2C2.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold128 SAMTools SNP 246059 246059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C116%2C6%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 246089 246089 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C100%2C0%2C65%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1.1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold128 SAMTools SNP 246096 246096 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C91%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold128 SAMTools SNP 246135 246135 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C19%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.074%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C157:99 scaffold128 SAMTools SNP 264182 264182 227 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold128 SAMTools SNP 264230 264230 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C26:29 scaffold128 SAMTools SNP 264714 264714 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.33%2C3.3e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C206:99 scaffold128 SAMTools SNP 265077 265077 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 265122 265122 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C0%2C24%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold128 SAMTools SNP 265858 265858 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.39%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold128 SAMTools SNP 267009 267009 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold128 SAMTools SNP 267018 267018 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C3%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.035%2C0.075%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold128 SAMTools SNP 267069 267069 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold128 SAMTools SNP 267402 267402 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold128 SAMTools SNP 267413 267413 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold128 SAMTools SNP 267477 267477 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold128 SAMTools SNP 267733 267733 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.2%2C0.13%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold128 SAMTools SNP 267757 267757 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.11%2C0.12%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold128 SAMTools SNP 267760 267760 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold128 SAMTools SNP 267775 267775 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C17%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.019%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold128 SAMTools SNP 268480 268480 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold128 SAMTools SNP 269881 269881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold128 SAMTools SNP 270313 270313 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C222:99 scaffold128 SAMTools SNP 344931 344931 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold128 SAMTools SNP 347886 347886 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold128 SAMTools SNP 354834 354834 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold128 SAMTools SNP 394498 394498 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C92:95 scaffold128 SAMTools SNP 395389 395389 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C42%2C0:81 scaffold128 SAMTools SNP 395473 395473 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.12%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold128 SAMTools SNP 396170 396170 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold128 SAMTools SNP 396206 396206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 396302 396302 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.25%2C0.00042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold128 SAMTools SNP 396316 396316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 396741 396741 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold128 SAMTools SNP 396969 396969 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C39%2C0:75 scaffold128 SAMTools SNP 397242 397242 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold128 SAMTools SNP 397254 397254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold128 SAMTools SNP 397841 397841 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C7%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00063%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold128 SAMTools SNP 397847 397847 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0095%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold128 SAMTools SNP 397894 397894 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C20%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C4.9e-31%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C150:75 scaffold128 SAMTools SNP 398099 398099 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C7.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C188:56 scaffold128 SAMTools SNP 398124 398124 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C30%2C0:57 scaffold128 SAMTools SNP 398156 398156 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold128 SAMTools SNP 399398 399398 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.0044%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold128 SAMTools SNP 399416 399416 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C33%2C0:63 scaffold128 SAMTools SNP 399449 399449 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold128 SAMTools SNP 417377 417377 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 417430 417430 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold128 SAMTools SNP 417434 417434 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 428826 428826 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.2%2C6.6e-08%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold128 SAMTools SNP 428835 428835 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold128 SAMTools SNP 436453 436453 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 436606 436606 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold128 SAMTools SNP 436741 436741 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold128 SAMTools SNP 436933 436933 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0095%2C2.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold128 SAMTools SNP 460477 460477 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold128 SAMTools SNP 460635 460635 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold128 SAMTools SNP 460723 460723 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C40:42 scaffold128 SAMTools SNP 460738 460738 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 461198 461198 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 464657 464657 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 471109 471109 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold128 SAMTools SNP 474079 474079 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 476768 476768 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold128 SAMTools SNP 504811 504811 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 504816 504816 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C237:99 scaffold128 SAMTools SNP 505161 505161 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.47%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 505596 505596 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold128 SAMTools SNP 505611 505611 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold128 SAMTools SNP 506504 506504 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.081%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold128 SAMTools SNP 506537 506537 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.62%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold128 SAMTools SNP 506645 506645 17.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold128 SAMTools SNP 506687 506687 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold128 SAMTools SNP 506710 506710 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C80%2C2%2C17%3BMQ%3D49%3BFQ%3D130%3BPV4%3D0.73%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold128 SAMTools SNP 506750 506750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C62%3BMQ%3D49%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold128 SAMTools SNP 507613 507613 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.009%2C1%2C1%2C7.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold128 SAMTools SNP 507694 507694 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C0.0049%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold128 SAMTools SNP 508588 508588 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.21%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold128 SAMTools SNP 508634 508634 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold128 SAMTools SNP 508918 508918 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.57%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold128 SAMTools SNP 508930 508930 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold128 SAMTools SNP 509001 509001 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C129%2C0:99 scaffold128 SAMTools SNP 509800 509800 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold128 SAMTools SNP 509811 509811 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.048%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold128 SAMTools SNP 509836 509836 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C6%2C17%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.023%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold128 SAMTools SNP 509856 509856 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold128 SAMTools SNP 510358 510358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold128 SAMTools SNP 510418 510418 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.023%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold128 SAMTools SNP 510796 510796 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C65%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.057%2C1.8e-91%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold128 SAMTools SNP 512642 512642 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold128 SAMTools SNP 513262 513262 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.33%2C0.012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold128 SAMTools SNP 513303 513303 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C1.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold128 SAMTools SNP 513335 513335 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.55%2C8.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold128 SAMTools SNP 513860 513860 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold128 SAMTools SNP 513872 513872 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold128 SAMTools SNP 514137 514137 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.025%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C151:34 scaffold128 SAMTools SNP 514552 514552 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C9%2C0:16 scaffold128 SAMTools SNP 514603 514603 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold128 SAMTools SNP 514607 514607 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold128 SAMTools SNP 515161 515161 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 518378 518378 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0138%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold128 SAMTools SNP 518438 518438 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold128 SAMTools SNP 519075 519075 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold128 SAMTools SNP 519171 519171 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold128 SAMTools SNP 519228 519228 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.53%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold128 SAMTools SNP 519573 519573 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold128 SAMTools SNP 519607 519607 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 519733 519733 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold128 SAMTools SNP 520205 520205 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold128 SAMTools SNP 520267 520267 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold128 SAMTools SNP 520529 520529 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold128 SAMTools SNP 520547 520547 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold128 SAMTools SNP 520610 520610 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold128 SAMTools SNP 521166 521166 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.22%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold128 SAMTools SNP 521526 521526 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold128 SAMTools SNP 521556 521556 54.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold128 SAMTools SNP 522036 522036 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold128 SAMTools SNP 522044 522044 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold128 SAMTools SNP 522087 522087 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold128 SAMTools SNP 522089 522089 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold128 SAMTools SNP 522440 522440 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 522464 522464 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold128 SAMTools SNP 522659 522659 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold128 SAMTools SNP 522705 522705 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 522999 522999 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 523392 523392 14.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold128 SAMTools SNP 523432 523432 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 523441 523441 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold128 SAMTools SNP 523753 523753 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.48%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold128 SAMTools SNP 523775 523775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold128 SAMTools SNP 523920 523920 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold128 SAMTools SNP 523940 523940 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold128 SAMTools SNP 524140 524140 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold128 SAMTools SNP 524152 524152 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 524167 524167 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 524236 524236 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 524598 524598 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 524629 524629 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 525158 525158 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 526697 526697 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold128 SAMTools SNP 530294 530294 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold128 SAMTools SNP 530318 530318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C6%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold128 SAMTools SNP 530522 530522 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C65%2C3%2C19%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.55%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold128 SAMTools SNP 530838 530838 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 530943 530943 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 530961 530961 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C21%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold128 SAMTools SNP 531095 531095 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 531221 531221 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 531230 531230 104 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold128 SAMTools SNP 531263 531263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 532745 532745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C95%2C43%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold128 SAMTools SNP 532784 532784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C109%2C33%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold128 SAMTools SNP 533190 533190 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C38%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D0.48%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold128 SAMTools SNP 533232 533232 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold128 SAMTools SNP 533505 533505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C24%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold128 SAMTools SNP 533517 533517 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold128 SAMTools SNP 535489 535489 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C31%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.26%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold128 SAMTools SNP 536485 536485 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C90%2C0:99 scaffold128 SAMTools SNP 537231 537231 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C36%2C0:69 scaffold128 SAMTools SNP 539434 539434 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold128 SAMTools SNP 539839 539839 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0057%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C18:21 scaffold128 SAMTools SNP 540324 540324 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold128 SAMTools SNP 540327 540327 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold128 SAMTools SNP 540411 540411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold128 SAMTools SNP 540441 540441 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 540447 540447 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.43%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 540687 540687 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C32%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold128 SAMTools SNP 540786 540786 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold128 SAMTools SNP 540994 540994 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 541058 541058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 541106 541106 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 541250 541250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 541944 541944 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C31%2C114%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 542211 542211 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C54%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 542251 542251 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0006%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold128 SAMTools SNP 542257 542257 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00071%2C2.3e-09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold128 SAMTools SNP 542517 542517 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.69%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold128 SAMTools SNP 542740 542740 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold128 SAMTools SNP 542784 542784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold128 SAMTools SNP 543112 543112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 543318 543318 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C17%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold128 SAMTools SNP 543851 543851 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold128 SAMTools SNP 543860 543860 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold128 SAMTools SNP 544222 544222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold128 SAMTools SNP 544296 544296 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold128 SAMTools SNP 544339 544339 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold128 SAMTools SNP 544584 544584 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold128 SAMTools SNP 544599 544599 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C74:77 scaffold128 SAMTools SNP 545321 545321 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C24%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C15:18 scaffold128 SAMTools SNP 545348 545348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold128 SAMTools SNP 545429 545429 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold128 SAMTools SNP 546173 546173 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold128 SAMTools SNP 546200 546200 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold128 SAMTools SNP 546224 546224 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold128 SAMTools SNP 546234 546234 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold128 SAMTools SNP 546534 546534 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 546606 546606 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C70%2C6%2C58%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 554843 554843 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold128 SAMTools SNP 554935 554935 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C8%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0052%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold128 SAMTools SNP 563308 563308 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold128 SAMTools SNP 563434 563434 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C17%2C40%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.0019%2C1.9e-42%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C195:99 scaffold128 SAMTools SNP 565820 565820 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold128 SAMTools SNP 565821 565821 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold128 SAMTools SNP 566289 566289 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold128 SAMTools SNP 625135 625135 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold128 SAMTools SNP 625137 625137 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C250:66 scaffold128 SAMTools SNP 628503 628503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 629513 629513 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold128 SAMTools SNP 629529 629529 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold128 SAMTools SNP 630680 630680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-07%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold128 SAMTools SNP 630705 630705 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C28%2C10%3BMQ%3D50%3BFQ%3D198%3BPV4%3D7.3e-09%2C0.073%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold128 SAMTools SNP 630903 630903 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold128 SAMTools SNP 630939 630939 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C35%2C1%2C6%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.41%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold128 SAMTools SNP 632577 632577 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D0.25%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold128 SAMTools SNP 633063 633063 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.8e-05%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C228:81 scaffold128 SAMTools SNP 635024 635024 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 635293 635293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 635602 635602 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold128 SAMTools SNP 635626 635626 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold128 SAMTools SNP 635889 635889 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold128 SAMTools SNP 636000 636000 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C48%2C0:93 scaffold128 SAMTools SNP 637220 637220 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold128 SAMTools SNP 638713 638713 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 638719 638719 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold128 SAMTools SNP 638860 638860 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C236:99 scaffold128 SAMTools SNP 639015 639015 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C218:99 scaffold128 SAMTools SNP 639045 639045 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.072%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C174:99 scaffold128 SAMTools SNP 639067 639067 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.58%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold128 SAMTools SNP 639901 639901 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold128 SAMTools SNP 642763 642763 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold128 SAMTools SNP 674059 674059 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1282 SAMTools SNP 25995 25995 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1282 SAMTools SNP 26175 26175 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1282 SAMTools SNP 27372 27372 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1282 SAMTools SNP 27381 27381 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1282 SAMTools SNP 32742 32742 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1282 SAMTools SNP 35065 35065 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1282 SAMTools SNP 66569 66569 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C2%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.05%2C0.00013%2C0.003%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C226:44 scaffold1282 SAMTools SNP 72316 72316 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1282 SAMTools SNP 72936 72936 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1282 SAMTools SNP 74364 74364 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C57%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-11%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1282 SAMTools SNP 75772 75772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C3%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1282 SAMTools SNP 75862 75862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1282 SAMTools SNP 75876 75876 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C27%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1282 SAMTools SNP 75877 75877 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C4%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.0089%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1282 SAMTools SNP 76400 76400 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 16939 16939 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 16952 16952 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 17082 17082 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1283 SAMTools SNP 17586 17586 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.55%2C0.34%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C240:97 scaffold1283 SAMTools SNP 17807 17807 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1283 SAMTools SNP 18572 18572 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1283 SAMTools SNP 18730 18730 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 22883 22883 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.58%2C6.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C214:82 scaffold1283 SAMTools SNP 24293 24293 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1283 SAMTools SNP 25012 25012 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1283 SAMTools SNP 25013 25013 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.52%2C0.031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1283 SAMTools SNP 27400 27400 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C4%2C2%3BMQ%3D47%3BFQ%3D67%3BPV4%3D1%2C0.17%2C0.33%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1283 SAMTools SNP 30926 30926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C56%2C19%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 31007 31007 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C29%2C166%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 33276 33276 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C173%2C9%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 33294 33294 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C130%2C21%2C174%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 33303 33303 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C130%2C24%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 33321 33321 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C178%2C9%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 33371 33371 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 34076 34076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 34088 34088 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 35306 35306 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1283 SAMTools SNP 35333 35333 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1283 SAMTools SNP 36227 36227 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold1283 SAMTools SNP 36277 36277 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold1283 SAMTools SNP 36313 36313 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C27%2C0:51 scaffold1283 SAMTools SNP 36410 36410 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C60%2C0:99 scaffold1283 SAMTools SNP 36439 36439 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1283 SAMTools SNP 40854 40854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C5%2C24%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1283 SAMTools SNP 41110 41110 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.46%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1283 SAMTools SNP 41206 41206 87.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C55%2C37%2C116%2C0%2C110:33 scaffold1283 SAMTools SNP 41242 41242 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1283 SAMTools SNP 47163 47163 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1283 SAMTools SNP 47764 47764 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1283 SAMTools SNP 47788 47788 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold1283 SAMTools SNP 53753 53753 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 55404 55404 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1283 SAMTools SNP 64178 64178 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C32%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D4.3e-07%2C2.9e-44%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1283 SAMTools SNP 64216 64216 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C21%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0012%2C5.1e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1283 SAMTools SNP 65025 65025 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1283 SAMTools SNP 68671 68671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1283 SAMTools SNP 68750 68750 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold1283 SAMTools SNP 68805 68805 67.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1283 SAMTools SNP 68830 68830 29.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1283 SAMTools SNP 68859 68859 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C71:40 scaffold1283 SAMTools SNP 68922 68922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1283 SAMTools SNP 69246 69246 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1283 SAMTools SNP 76534 76534 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 80898 80898 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1283 SAMTools SNP 81238 81238 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1283 SAMTools SNP 83101 83101 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 83110 83110 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 84241 84241 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C96%2C0:99 scaffold1283 SAMTools SNP 84304 84304 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C48%2C0:93 scaffold1283 SAMTools SNP 85404 85404 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold1283 SAMTools SNP 90198 90198 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0015%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1283 SAMTools SNP 90498 90498 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1283 SAMTools SNP 90653 90653 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1283 SAMTools SNP 91823 91823 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1283 SAMTools SNP 92745 92745 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.58%2C8.4e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1283 SAMTools SNP 92916 92916 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.33%2C5e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C138:72 scaffold1283 SAMTools SNP 94882 94882 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 106119 106119 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 106358 106358 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 113060 113060 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1283 SAMTools SNP 113257 113257 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1283 SAMTools SNP 113311 113311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1283 SAMTools SNP 113624 113624 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1283 SAMTools SNP 114478 114478 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1283 SAMTools SNP 114539 114539 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1283 SAMTools SNP 114868 114868 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D48%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1283 SAMTools SNP 115066 115066 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1283 SAMTools SNP 163678 163678 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1283 SAMTools SNP 163693 163693 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 164769 164769 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 164865 164865 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1283 SAMTools SNP 164876 164876 47.3 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C34%2C19%2C78%2C0%2C72:27 scaffold1283 SAMTools SNP 170726 170726 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D41%3BFQ%3D4.77%3BPV4%3D1%2C8.3e-05%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold1283 SAMTools SNP 170921 170921 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1.4e-05%2C0.19%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C32:35 scaffold1283 SAMTools SNP 174167 174167 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 204046 204046 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1283 SAMTools SNP 212765 212765 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 213786 213786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 218879 218879 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 223368 223368 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C214:79 scaffold1283 SAMTools SNP 223395 223395 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1283 SAMTools SNP 223421 223421 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C39%2C0:75 scaffold1283 SAMTools SNP 223515 223515 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1283 SAMTools SNP 223562 223562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1283 SAMTools SNP 224380 224380 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold1283 SAMTools SNP 224418 224418 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.47%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C254:99 scaffold1283 SAMTools SNP 224497 224497 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 229183 229183 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 229195 229195 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1283 SAMTools SNP 229237 229237 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1283 SAMTools SNP 230228 230228 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1283 SAMTools SNP 231662 231662 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0077%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1283 SAMTools SNP 232442 232442 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1283 SAMTools SNP 232463 232463 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1283 SAMTools SNP 232682 232682 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 232712 232712 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 239088 239088 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1283 SAMTools SNP 239190 239190 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1283 SAMTools SNP 241530 241530 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1283 SAMTools SNP 251514 251514 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1283 SAMTools SNP 292995 292995 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D39%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C45%2C0:87 scaffold1283 SAMTools SNP 293024 293024 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D29%3BPV4%3D0.45%2C0.03%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1286 SAMTools SNP 3126 3126 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 11141 11141 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1286 SAMTools SNP 12551 12551 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1286 SAMTools SNP 12673 12673 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1286 SAMTools SNP 29612 29612 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1286 SAMTools SNP 30062 30062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1286 SAMTools SNP 30152 30152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.5%2C4.5e-16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold1286 SAMTools SNP 30230 30230 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.42%2C0.021%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1286 SAMTools SNP 30686 30686 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold1286 SAMTools SNP 32415 32415 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.27%2C0.28%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1286 SAMTools SNP 32427 32427 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.024%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1286 SAMTools SNP 32493 32493 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.57%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1286 SAMTools SNP 32790 32790 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C190:99 scaffold1286 SAMTools SNP 32794 32794 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1286 SAMTools SNP 33982 33982 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C240:99 scaffold1286 SAMTools SNP 34054 34054 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 34126 34126 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1286 SAMTools SNP 34165 34165 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold1286 SAMTools SNP 34597 34597 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0014%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1286 SAMTools SNP 34794 34794 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1286 SAMTools SNP 34803 34803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1286 SAMTools SNP 34821 34821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1286 SAMTools SNP 36011 36011 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C35:38 scaffold1286 SAMTools SNP 38134 38134 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C105%2C179%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.02%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 38615 38615 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D0.25%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold1286 SAMTools SNP 39400 39400 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 39460 39460 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.3%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C213:99 scaffold1286 SAMTools SNP 39472 39472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1286 SAMTools SNP 39499 39499 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1286 SAMTools SNP 39899 39899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 39941 39941 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C93%2C78%3BMQ%3D50%3BFQ%3D-278%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C4:99 scaffold1286 SAMTools SNP 39968 39968 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C68%2C21%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1286 SAMTools SNP 43487 43487 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C84%2C0%2C54%3BMQ%3D50%3BFQ%3D131%3BPV4%3D4.3e-06%2C8.4e-14%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1286 SAMTools SNP 45897 45897 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 45980 45980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C69%2C109%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 46159 46159 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C84%2C10%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 46186 46186 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C38%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1286 SAMTools SNP 46307 46307 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C146%2C23%2C22%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1286 SAMTools SNP 46309 46309 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C143%2C22%2C23%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1286 SAMTools SNP 48877 48877 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1286 SAMTools SNP 48965 48965 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1286 SAMTools SNP 49194 49194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C162%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 49236 49236 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C46%2C6%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.069%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1286 SAMTools SNP 49275 49275 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0049%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1286 SAMTools SNP 49278 49278 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.67%2C0.054%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1286 SAMTools SNP 49290 49290 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 49299 49299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 49585 49585 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C21%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1286 SAMTools SNP 49606 49606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 49618 49618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C32%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1286 SAMTools SNP 49732 49732 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C18%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 49789 49789 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C28%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1286 SAMTools SNP 50291 50291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 50437 50437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C144%2C21%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 51122 51122 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C29%2C35%3BMQ%3D50%3BFQ%3D-181%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1286 SAMTools SNP 51518 51518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C154%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 51629 51629 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1286 SAMTools SNP 52575 52575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C207%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 52989 52989 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C29%2C17%2C16%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.83%2C2e-65%2C1%2C1.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1286 SAMTools SNP 53070 53070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C65%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C3.9e-71%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 53316 53316 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.22%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1286 SAMTools SNP 53409 53409 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0056%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1286 SAMTools SNP 53761 53761 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C301%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 53923 53923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 54572 54572 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C55%2C24%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1.4e-20%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 55410 55410 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1286 SAMTools SNP 58016 58016 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C29%2C2%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-08%2C0.029%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 59080 59080 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1286 SAMTools SNP 59628 59628 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 60891 60891 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D29.2%3BPV4%3D0.091%2C1.8e-14%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C57:59 scaffold1286 SAMTools SNP 64507 64507 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1286 SAMTools SNP 64518 64518 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C9%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1286 SAMTools SNP 64707 64707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1286 SAMTools SNP 65319 65319 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1286 SAMTools SNP 65555 65555 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1286 SAMTools SNP 65615 65615 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 67154 67154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1286 SAMTools SNP 67175 67175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1286 SAMTools SNP 67565 67565 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 67642 67642 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1286 SAMTools SNP 67887 67887 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1286 SAMTools SNP 68019 68019 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1286 SAMTools SNP 68198 68198 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1286 SAMTools SNP 76076 76076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C10%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.14%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1286 SAMTools SNP 76100 76100 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C10%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.32%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C247:99 scaffold1286 SAMTools SNP 76142 76142 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold1286 SAMTools SNP 82681 82681 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1286 SAMTools SNP 82691 82691 35.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1286 SAMTools SNP 98667 98667 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C81%2C0:99 scaffold1286 SAMTools SNP 103675 103675 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1286 SAMTools SNP 104421 104421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 104626 104626 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C24%2C0:45 scaffold1286 SAMTools SNP 104659 104659 91.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold1286 SAMTools SNP 104663 104663 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1286 SAMTools SNP 104909 104909 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1286 SAMTools SNP 105653 105653 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 105665 105665 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 105773 105773 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 105879 105879 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 106249 106249 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 106735 106735 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1286 SAMTools SNP 107683 107683 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1286 SAMTools SNP 107700 107700 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1286 SAMTools SNP 110989 110989 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D3%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C108%2C0:72 scaffold1286 SAMTools SNP 113206 113206 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1286 SAMTools SNP 115035 115035 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1286 SAMTools SNP 119596 119596 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1286 SAMTools SNP 119662 119662 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1286 SAMTools SNP 119795 119795 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 119804 119804 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 128334 128334 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1286 SAMTools SNP 128440 128440 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 128479 128479 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1286 SAMTools SNP 135933 135933 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 135999 135999 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1286 SAMTools SNP 136273 136273 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0136%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1286 SAMTools SNP 136301 136301 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1286 SAMTools SNP 136489 136489 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0:45 scaffold1286 SAMTools SNP 137849 137849 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1286 SAMTools SNP 139009 139009 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 140047 140047 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.16%2C0.003%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1286 SAMTools SNP 140094 140094 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 140470 140470 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.00011%2C4.7e-10%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1286 SAMTools SNP 140492 140492 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 140699 140699 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.39%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1286 SAMTools SNP 141091 141091 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 141251 141251 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1286 SAMTools SNP 141282 141282 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C148:34 scaffold1286 SAMTools SNP 141392 141392 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.36%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1286 SAMTools SNP 141410 141410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 141969 141969 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1286 SAMTools SNP 142212 142212 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1286 SAMTools SNP 142893 142893 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C11%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.054%2C4.8e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1286 SAMTools SNP 142917 142917 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 143590 143590 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C19%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1286 SAMTools SNP 144403 144403 66.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1286 SAMTools SNP 144661 144661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1286 SAMTools SNP 183752 183752 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1286 SAMTools SNP 183786 183786 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1286 SAMTools SNP 184142 184142 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold1286 SAMTools SNP 184935 184935 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 185599 185599 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1286 SAMTools SNP 185832 185832 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1286 SAMTools SNP 186214 186214 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C18%2C0:33 scaffold1286 SAMTools SNP 186535 186535 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1286 SAMTools SNP 186664 186664 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 186749 186749 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1286 SAMTools SNP 187321 187321 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D45%3BFQ%3D5.47%3BPV4%3D0.17%2C1%2C0.0051%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C245:30 scaffold1286 SAMTools SNP 187346 187346 69.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1286 SAMTools SNP 187779 187779 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1286 SAMTools SNP 189338 189338 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1286 SAMTools SNP 189371 189371 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 197519 197519 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 197729 197729 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1286 SAMTools SNP 198875 198875 17.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C41%2C38%2C47%2C0%2C44:6 scaffold1286 SAMTools SNP 199224 199224 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 199277 199277 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1286 SAMTools SNP 199459 199459 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1286 SAMTools SNP 199518 199518 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1286 SAMTools SNP 199724 199724 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.5%2C0.47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1286 SAMTools SNP 199736 199736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1286 SAMTools SNP 199763 199763 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1286 SAMTools SNP 199832 199832 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 199838 199838 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 199844 199844 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 199853 199853 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1286 SAMTools SNP 204113 204113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1286 SAMTools SNP 204234 204234 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1286 SAMTools SNP 204240 204240 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 204433 204433 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1286 SAMTools SNP 204516 204516 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1286 SAMTools SNP 204532 204532 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1286 SAMTools SNP 204562 204562 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C63:66 scaffold1286 SAMTools SNP 204586 204586 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1286 SAMTools SNP 208565 208565 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1286 SAMTools SNP 208604 208604 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1286 SAMTools SNP 209056 209056 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1286 SAMTools SNP 209080 209080 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1286 SAMTools SNP 209122 209122 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1286 SAMTools SNP 209919 209919 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1286 SAMTools SNP 209930 209930 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.6e-06%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C229:41 scaffold1286 SAMTools SNP 209949 209949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1286 SAMTools SNP 210779 210779 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1286 SAMTools SNP 210788 210788 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.29%2C0.062%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1286 SAMTools SNP 211065 211065 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1286 SAMTools SNP 211110 211110 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.07%3BPV4%3D0.43%2C5.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C29:32 scaffold1286 SAMTools SNP 211179 211179 19 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1286 SAMTools SNP 213972 213972 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.28%2C1.2e-30%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1286 SAMTools SNP 214125 214125 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1288 SAMTools SNP 1422 1422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 1488 1488 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 1586 1586 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 1590 1590 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 1963 1963 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 1998 1998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1288 SAMTools SNP 2043 2043 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1288 SAMTools SNP 2220 2220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1288 SAMTools SNP 2807 2807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1288 SAMTools SNP 3414 3414 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1288 SAMTools SNP 4012 4012 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D190%3BPV4%3D8.4e-08%2C0.068%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1288 SAMTools SNP 4416 4416 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 4428 4428 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C28%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 4452 4452 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C42%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 4858 4858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1288 SAMTools SNP 5855 5855 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C0%2C11%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.19%2C0.001%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1288 SAMTools SNP 6042 6042 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 6486 6486 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.23%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 6576 6576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 6639 6639 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1288 SAMTools SNP 6924 6924 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1288 SAMTools SNP 7380 7380 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold1288 SAMTools SNP 8149 8149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1288 SAMTools SNP 11490 11490 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C8%3BMQ%3D49%3BFQ%3D200%3BPV4%3D1%2C1%2C0.17%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1288 SAMTools SNP 11577 11577 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1288 SAMTools SNP 11794 11794 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D35%3BFQ%3D10.6%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C45:39 scaffold1288 SAMTools SNP 12526 12526 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C9%2C5%3BMQ%3D33%3BFQ%3D110%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C204:99 scaffold1288 SAMTools SNP 12709 12709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C18%3BMQ%3D34%3BFQ%3D-111%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1288 SAMTools SNP 12811 12811 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C10%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.15%2C2.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1288 SAMTools SNP 12957 12957 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C19%2C32%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0068%2C2.1e-12%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1288 SAMTools SNP 13841 13841 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0018%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C21:24 scaffold1288 SAMTools SNP 14454 14454 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1288 SAMTools SNP 14457 14457 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1288 SAMTools SNP 14514 14514 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1288 SAMTools SNP 14529 14529 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1288 SAMTools SNP 14785 14785 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C15%2C0:27 scaffold1288 SAMTools SNP 14875 14875 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C16%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1288 SAMTools SNP 15178 15178 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1288 SAMTools SNP 15560 15560 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1288 SAMTools SNP 15566 15566 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C104:99 scaffold1288 SAMTools SNP 15662 15662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D4%2C0%2C40%2C3%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C25:28 scaffold1288 SAMTools SNP 15687 15687 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 15975 15975 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 16273 16273 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold1288 SAMTools SNP 16337 16337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1288 SAMTools SNP 17046 17046 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C46%2C6%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.77%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 17388 17388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1288 SAMTools SNP 17427 17427 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1288 SAMTools SNP 18176 18176 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.21%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1288 SAMTools SNP 18179 18179 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1288 SAMTools SNP 18182 18182 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.036%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C253:99 scaffold1288 SAMTools SNP 18254 18254 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C0.45%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 18757 18757 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C202:72 scaffold1288 SAMTools SNP 19930 19930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1288 SAMTools SNP 20023 20023 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1288 SAMTools SNP 20579 20579 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 20609 20609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C12%3BMQ%3D49%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1288 SAMTools SNP 20666 20666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C9%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1288 SAMTools SNP 24389 24389 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C1%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.073%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 24965 24965 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C3%2C29%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.26%2C0.048%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1288 SAMTools SNP 24968 24968 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C0%2C23%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1288 SAMTools SNP 25427 25427 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1288 SAMTools SNP 46258 46258 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold1288 SAMTools SNP 49610 49610 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1288 SAMTools SNP 52120 52120 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1288 SAMTools SNP 52139 52139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 68490 68490 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1288 SAMTools SNP 69715 69715 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 70241 70241 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 80094 80094 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 82311 82311 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1288 SAMTools SNP 94897 94897 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C21%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.00079%2C0.0002%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1288 SAMTools SNP 96921 96921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C24%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1288 SAMTools SNP 97473 97473 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 99163 99163 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1288 SAMTools SNP 99192 99192 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C56%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 99231 99231 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C4%2C69%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 102546 102546 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C23%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1288 SAMTools SNP 102716 102716 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1288 SAMTools SNP 103377 103377 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C12%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1288 SAMTools SNP 103888 103888 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C5%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.37%2C3.5e-06%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1288 SAMTools SNP 104294 104294 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C5%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1288 SAMTools SNP 104953 104953 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1288 SAMTools SNP 105503 105503 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D19.3%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C51:49 scaffold1288 SAMTools SNP 105808 105808 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C17%2C15%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.33%2C2.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1288 SAMTools SNP 106821 106821 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C3.7e-06%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C29:32 scaffold1288 SAMTools SNP 107366 107366 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold1288 SAMTools SNP 108573 108573 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1288 SAMTools SNP 108605 108605 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C230:99 scaffold1288 SAMTools SNP 108612 108612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1288 SAMTools SNP 109552 109552 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 109585 109585 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 111216 111216 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 111832 111832 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1288 SAMTools SNP 113116 113116 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.00072%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1288 SAMTools SNP 113127 113127 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.25%2C0.17%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1288 SAMTools SNP 114261 114261 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.063%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1288 SAMTools SNP 114855 114855 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1288 SAMTools SNP 117129 117129 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C179:78 scaffold1288 SAMTools SNP 122647 122647 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1288 SAMTools SNP 122650 122650 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.19%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1288 SAMTools SNP 123426 123426 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C17%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1288 SAMTools SNP 124312 124312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1288 SAMTools SNP 124377 124377 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1288 SAMTools SNP 124379 124379 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1288 SAMTools SNP 124857 124857 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.47%2C0.025%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C204:99 scaffold1288 SAMTools SNP 125397 125397 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C21%2C0:39 scaffold1288 SAMTools SNP 125619 125619 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold1288 SAMTools SNP 125643 125643 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.45%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C246:76 scaffold1288 SAMTools SNP 125787 125787 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1288 SAMTools SNP 125991 125991 6.79 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C24%2C35%2C0%2C32:7 scaffold1288 SAMTools SNP 126027 126027 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C30%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C6.7e-33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1288 SAMTools SNP 130124 130124 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1288 SAMTools SNP 130178 130178 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1288 SAMTools SNP 130192 130192 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.069%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1288 SAMTools SNP 130535 130535 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1288 SAMTools SNP 131922 131922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1288 SAMTools SNP 132018 132018 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C1%3BMQ%3D48%3BFQ%3D32%3BPV4%3D0.55%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1288 SAMTools SNP 132036 132036 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C3%3BMQ%3D49%3BFQ%3D148%3BPV4%3D0.64%2C0.17%2C0.092%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1288 SAMTools SNP 132364 132364 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.069%2C0.49%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1288 SAMTools SNP 132430 132430 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C9%3BMQ%3D48%3BFQ%3D141%3BPV4%3D0.14%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C168:99 scaffold1288 SAMTools SNP 135546 135546 68.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold1288 SAMTools SNP 135614 135614 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1288 SAMTools SNP 135790 135790 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.63%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1288 SAMTools SNP 135841 135841 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1288 SAMTools SNP 135847 135847 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1288 SAMTools SNP 135880 135880 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C11%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.62%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1288 SAMTools SNP 136129 136129 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.1%2C0.00051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1288 SAMTools SNP 141037 141037 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.28%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1288 SAMTools SNP 141116 141116 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1288 SAMTools SNP 143969 143969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1288 SAMTools SNP 143973 143973 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1288 SAMTools SNP 144047 144047 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1288 SAMTools SNP 153596 153596 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1288 SAMTools SNP 153597 153597 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1288 SAMTools SNP 155674 155674 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1288 SAMTools SNP 157115 157115 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1288 SAMTools SNP 157333 157333 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 157351 157351 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1288 SAMTools SNP 157363 157363 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1288 SAMTools SNP 157765 157765 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C48%2C0:93 scaffold1288 SAMTools SNP 157810 157810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1288 SAMTools SNP 159316 159316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 159337 159337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 159415 159415 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1288 SAMTools SNP 159436 159436 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 159466 159466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 161402 161402 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1288 SAMTools SNP 161471 161471 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C54%2C0:99 scaffold1288 SAMTools SNP 161891 161891 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1288 SAMTools SNP 166532 166532 46.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D27%3BFQ%3D-39%3BPV4%3D1%2C0.3%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1288 SAMTools SNP 167621 167621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C13%2C28%3BMQ%3D43%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 169209 169209 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C0%2C4%3BMQ%3D42%3BFQ%3D12.3%3BPV4%3D0.28%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1288 SAMTools SNP 170972 170972 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 171308 171308 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C30%2C0:57 scaffold1288 SAMTools SNP 182295 182295 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.5%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1288 SAMTools SNP 182869 182869 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1288 SAMTools SNP 185357 185357 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1288 SAMTools SNP 188072 188072 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 188125 188125 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 188288 188288 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.58%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1288 SAMTools SNP 188419 188419 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C175:99 scaffold1288 SAMTools SNP 188431 188431 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.11%2C0.022%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1288 SAMTools SNP 189856 189856 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1288 SAMTools SNP 191032 191032 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C241:99 scaffold1288 SAMTools SNP 191595 191595 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1288 SAMTools SNP 191945 191945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1288 SAMTools SNP 192044 192044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1288 SAMTools SNP 192829 192829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1288 SAMTools SNP 192890 192890 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C54%2C0:99 scaffold1288 SAMTools SNP 192940 192940 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C39%2C0:75 scaffold1288 SAMTools SNP 192988 192988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1288 SAMTools SNP 193317 193317 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C239:99 scaffold1288 SAMTools SNP 193361 193361 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.21%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1288 SAMTools SNP 193650 193650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 193854 193854 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1288 SAMTools SNP 194017 194017 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1288 SAMTools SNP 194617 194617 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1288 SAMTools SNP 194892 194892 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 194940 194940 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1288 SAMTools SNP 194961 194961 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1288 SAMTools SNP 195156 195156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 195478 195478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C8%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1288 SAMTools SNP 195500 195500 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C8%2C11%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1288 SAMTools SNP 196156 196156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1288 SAMTools SNP 196169 196169 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C75%2C0:99 scaffold1288 SAMTools SNP 196714 196714 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C22%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.031%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold1288 SAMTools SNP 196944 196944 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C24%2C0:45 scaffold1288 SAMTools SNP 197378 197378 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1288 SAMTools SNP 197402 197402 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1288 SAMTools SNP 200506 200506 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C1%2C10%3BMQ%3D47%3BFQ%3D182%3BPV4%3D5.8e-06%2C1%2C0.0093%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1288 SAMTools SNP 200536 200536 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.13%2C0.21%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1288 SAMTools SNP 200855 200855 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.63%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1288 SAMTools SNP 201322 201322 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 201337 201337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1288 SAMTools SNP 201475 201475 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.2%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 201499 201499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C119%2C7%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 202056 202056 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C14%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D4e-08%2C7.8e-09%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1288 SAMTools SNP 204675 204675 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C17%2C63%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1.2e-34%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 204809 204809 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C124%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 207165 207165 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1288 SAMTools SNP 207339 207339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C61%2C110%3BMQ%3D45%3BFQ%3D-282%3BPV4%3D0.36%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 209462 209462 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold1288 SAMTools SNP 212610 212610 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1288 SAMTools SNP 213583 213583 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C76%2C1%2C68%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.22%2C5.8e-105%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1288 SAMTools SNP 223126 223126 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1288 SAMTools SNP 223144 223144 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1288 SAMTools SNP 223228 223228 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1288 SAMTools SNP 223234 223234 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.2%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1288 SAMTools SNP 225065 225065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1288 SAMTools SNP 225767 225767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1288 SAMTools SNP 226067 226067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 226230 226230 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 226250 226250 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1288 SAMTools SNP 226284 226284 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C32%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C148%2C0:99 scaffold1288 SAMTools SNP 228064 228064 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.37%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1288 SAMTools SNP 229335 229335 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 229498 229498 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C44%3BMQ%3D23%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C169%2C0:99 scaffold1288 SAMTools SNP 233123 233123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C14%3BMQ%3D49%3BFQ%3D-97%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1288 SAMTools SNP 235458 235458 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1288 SAMTools SNP 235470 235470 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1288 SAMTools SNP 238690 238690 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1288 SAMTools SNP 241924 241924 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1288 SAMTools SNP 242462 242462 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.54%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1288 SAMTools SNP 242464 242464 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1288 SAMTools SNP 242709 242709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C0%2C58%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 243099 243099 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 243111 243111 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C3%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1288 SAMTools SNP 244022 244022 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1288 SAMTools SNP 244040 244040 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C197:79 scaffold1288 SAMTools SNP 244058 244058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1288 SAMTools SNP 244441 244441 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1288 SAMTools SNP 245145 245145 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold1288 SAMTools SNP 246055 246055 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C13%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1288 SAMTools SNP 246552 246552 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C13%2C35%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 247713 247713 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1288 SAMTools SNP 253885 253885 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.54%2C1.9e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1288 SAMTools SNP 255050 255050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1288 SAMTools SNP 259583 259583 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.45%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C221:99 scaffold1288 SAMTools SNP 259595 259595 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1288 SAMTools SNP 261859 261859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.25%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 263051 263051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1288 SAMTools SNP 264650 264650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1288 SAMTools SNP 264680 264680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C27%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1288 SAMTools SNP 265343 265343 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C113:99 scaffold1288 SAMTools SNP 265462 265462 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1288 SAMTools SNP 270993 270993 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1288 SAMTools SNP 271220 271220 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1288 SAMTools SNP 272759 272759 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold1288 SAMTools SNP 273022 273022 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1288 SAMTools SNP 273028 273028 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold1288 SAMTools SNP 273232 273232 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold1288 SAMTools SNP 274313 274313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C14%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1288 SAMTools SNP 274603 274603 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C22%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1288 SAMTools SNP 274657 274657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1288 SAMTools SNP 274904 274904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C34%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1288 SAMTools SNP 275504 275504 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.6e-07%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1288 SAMTools SNP 276341 276341 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1288 SAMTools SNP 276528 276528 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1288 SAMTools SNP 278858 278858 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C250%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1288 SAMTools SNP 278870 278870 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C234%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold129 SAMTools SNP 38262 38262 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold129 SAMTools SNP 39238 39238 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold129 SAMTools SNP 39362 39362 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1290 SAMTools SNP 10732 10732 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1290 SAMTools SNP 16348 16348 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C7.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C158:54 scaffold1290 SAMTools SNP 18935 18935 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1290 SAMTools SNP 18978 18978 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1290 SAMTools SNP 19684 19684 178 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C87%2C0%2C204%2C66%2C201:99 scaffold1290 SAMTools SNP 19882 19882 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1290 SAMTools SNP 19922 19922 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.42%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1290 SAMTools SNP 19966 19966 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 20099 20099 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1290 SAMTools SNP 20709 20709 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C6:45 scaffold1290 SAMTools SNP 20975 20975 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C37%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1.1e-39%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1290 SAMTools SNP 21002 21002 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.007%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1290 SAMTools SNP 21028 21028 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C97:99 scaffold1290 SAMTools SNP 23033 23033 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C67:70 scaffold1290 SAMTools SNP 23168 23168 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1290 SAMTools SNP 23196 23196 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1290 SAMTools SNP 23376 23376 90 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C45%2C0%2C120%2C31%2C117:87 scaffold1290 SAMTools SNP 23439 23439 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C35:38 scaffold1290 SAMTools SNP 23786 23786 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1290 SAMTools SNP 23983 23983 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1290 SAMTools SNP 24054 24054 22.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1290 SAMTools SNP 24790 24790 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 24814 24814 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 25544 25544 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold1290 SAMTools SNP 25579 25579 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 25966 25966 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1290 SAMTools SNP 26002 26002 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C1%2C11%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C6.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1290 SAMTools SNP 26290 26290 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1290 SAMTools SNP 26292 26292 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1290 SAMTools SNP 26311 26311 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1290 SAMTools SNP 26729 26729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C16%2C4%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1290 SAMTools SNP 27949 27949 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1290 SAMTools SNP 27967 27967 18.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-55;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C204%2C232%2C0%2C204:43 scaffold1290 SAMTools SNP 28219 28219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1290 SAMTools SNP 28251 28251 224 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C254:99 scaffold1290 SAMTools SNP 28880 28880 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C213:99 scaffold1290 SAMTools SNP 28890 28890 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C190:99 scaffold1290 SAMTools SNP 29323 29323 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1290 SAMTools SNP 29544 29544 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 29801 29801 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold1290 SAMTools SNP 29960 29960 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.038%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C220:57 scaffold1290 SAMTools SNP 29972 29972 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C220:57 scaffold1290 SAMTools SNP 30095 30095 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1290 SAMTools SNP 30260 30260 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.44%2C0.2%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1290 SAMTools SNP 30468 30468 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1290 SAMTools SNP 30492 30492 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C22%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1290 SAMTools SNP 30561 30561 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C111%2C0:99 scaffold1290 SAMTools SNP 30634 30634 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.18%2C1.2e-29%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C212:72 scaffold1290 SAMTools SNP 30727 30727 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.46%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C227:33 scaffold1290 SAMTools SNP 30771 30771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 34046 34046 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 34066 34066 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C0%2C91%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 34264 34264 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C95%2C49%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 36019 36019 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1290 SAMTools SNP 36212 36212 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1290 SAMTools SNP 36806 36806 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 36827 36827 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1290 SAMTools SNP 43390 43390 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.025%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1290 SAMTools SNP 43421 43421 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C25%2C3%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.42%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1290 SAMTools SNP 44131 44131 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C35%2C42%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 44248 44248 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C21%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 44299 44299 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C25%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.47%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 44854 44854 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C2%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0094%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1290 SAMTools SNP 45091 45091 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C27%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 45473 45473 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D463%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1290 SAMTools SNP 45927 45927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C293%2C1%2C169%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1290 SAMTools SNP 46425 46425 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C116:99 scaffold1290 SAMTools SNP 46436 46436 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1290 SAMTools SNP 46738 46738 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1290 SAMTools SNP 53498 53498 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C48%2C0:80 scaffold1290 SAMTools SNP 58428 58428 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1290 SAMTools SNP 58457 58457 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C2.3e-11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1290 SAMTools SNP 58490 58490 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D49%3BFQ%3D8.65%3BPV4%3D1%2C0.036%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C228:36 scaffold1290 SAMTools SNP 61648 61648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1290 SAMTools SNP 67898 67898 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C39%2C0:75 scaffold1290 SAMTools SNP 67907 67907 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C0:75 scaffold1290 SAMTools SNP 72686 72686 49.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1290 SAMTools SNP 73252 73252 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C82:85 scaffold1290 SAMTools SNP 73323 73323 6.17 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1290 SAMTools SNP 73732 73732 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C36%2C0:69 scaffold1290 SAMTools SNP 115662 115662 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C38%2C2%2C5%3BMQ%3D48%3BFQ%3D21%3BPV4%3D0.44%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1290 SAMTools SNP 116280 116280 5.83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C12%2C0:13 scaffold1290 SAMTools SNP 117204 117204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C40%3BMQ%3D49%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1290 SAMTools SNP 117226 117226 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C0%2C5%3BMQ%3D47%3BFQ%3D53%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1290 SAMTools SNP 118155 118155 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 10985 10985 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 11071 11071 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1293 SAMTools SNP 126957 126957 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1293 SAMTools SNP 127259 127259 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 127305 127305 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1293 SAMTools SNP 128741 128741 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1293 SAMTools SNP 156032 156032 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 156483 156483 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 156576 156576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1293 SAMTools SNP 156594 156594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C21%3BMQ%3D49%3BFQ%3D-69%3BPV4%3D0.16%2C1%2C0.42%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1293 SAMTools SNP 156621 156621 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C1%2C16%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.15%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1293 SAMTools SNP 159113 159113 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C4%3BMQ%3D42%3BFQ%3D154%3BPV4%3D0.61%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1293 SAMTools SNP 159756 159756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 160197 160197 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1293 SAMTools SNP 161754 161754 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 162277 162277 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1293 SAMTools SNP 164249 164249 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1293 SAMTools SNP 164705 164705 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1293 SAMTools SNP 164708 164708 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C142:99 scaffold1293 SAMTools SNP 164726 164726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1293 SAMTools SNP 165195 165195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1293 SAMTools SNP 165216 165216 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 165236 165236 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1293 SAMTools SNP 165249 165249 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C35:38 scaffold1293 SAMTools SNP 165656 165656 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C186:51 scaffold1293 SAMTools SNP 165698 165698 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C41%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1.2e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1293 SAMTools SNP 165761 165761 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.087%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1293 SAMTools SNP 166747 166747 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C53%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold1293 SAMTools SNP 166822 166822 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold1293 SAMTools SNP 167980 167980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1293 SAMTools SNP 168013 168013 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1293 SAMTools SNP 170035 170035 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1293 SAMTools SNP 170080 170080 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 170826 170826 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1293 SAMTools SNP 170829 170829 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1293 SAMTools SNP 171355 171355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C7%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C0.45%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 172906 172906 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.46%2C0.22%2C0.16%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 175724 175724 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.29%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1293 SAMTools SNP 176227 176227 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0091%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 176269 176269 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C28%2C0%2C14%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.0011%2C0.33%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1293 SAMTools SNP 176671 176671 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C2%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.32%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1293 SAMTools SNP 177101 177101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1293 SAMTools SNP 177122 177122 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1293 SAMTools SNP 177158 177158 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1293 SAMTools SNP 177185 177185 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1293 SAMTools SNP 179364 179364 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 181971 181971 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1293 SAMTools SNP 182507 182507 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C16%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1293 SAMTools SNP 182556 182556 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C49%2C3%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 183467 183467 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1293 SAMTools SNP 183614 183614 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.58%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1293 SAMTools SNP 183623 183623 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1293 SAMTools SNP 184526 184526 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1293 SAMTools SNP 184529 184529 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1293 SAMTools SNP 184566 184566 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C42%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1293 SAMTools SNP 184578 184578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C45%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1293 SAMTools SNP 187617 187617 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 187620 187620 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 188139 188139 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1293 SAMTools SNP 188606 188606 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1293 SAMTools SNP 188672 188672 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.17%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1293 SAMTools SNP 190967 190967 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold1293 SAMTools SNP 190990 190990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1293 SAMTools SNP 191906 191906 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1293 SAMTools SNP 196010 196010 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 196051 196051 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1293 SAMTools SNP 196052 196052 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C154:99 scaffold1293 SAMTools SNP 196055 196055 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.095%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold1293 SAMTools SNP 197517 197517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1293 SAMTools SNP 197747 197747 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1293 SAMTools SNP 198397 198397 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1293 SAMTools SNP 198433 198433 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1293 SAMTools SNP 223723 223723 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 224117 224117 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D314%2C264%2C230%2C311%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-05%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 226465 226465 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1293 SAMTools SNP 227863 227863 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1178%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C45%2C0:87 scaffold1293 SAMTools SNP 235541 235541 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1293 SAMTools SNP 235546 235546 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1293 SAMTools SNP 269604 269604 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.43%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C198:33 scaffold1293 SAMTools SNP 269980 269980 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1293 SAMTools SNP 270642 270642 111 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C3%3BMQ%3D43%3BFQ%3D73%3BPV4%3D1%2C1.1e-09%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C100:99 scaffold1293 SAMTools SNP 270735 270735 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C34%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C1.6e-54%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C207:52 scaffold1293 SAMTools SNP 274687 274687 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold1293 SAMTools SNP 286459 286459 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C93%2C0:99 scaffold1293 SAMTools SNP 288052 288052 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C6%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.033%2C1.2e-19%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1293 SAMTools SNP 288174 288174 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C17%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C141%2C0:99 scaffold1293 SAMTools SNP 288322 288322 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C1%2C73%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C3.4e-79%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1293 SAMTools SNP 289134 289134 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1293 SAMTools SNP 289152 289152 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.027%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1293 SAMTools SNP 289164 289164 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.015%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 289706 289706 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 289749 289749 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C5%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.72%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 289767 289767 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 290044 290044 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C6%2C77%2C4%3BMQ%3D41%3BFQ%3D100%3BPV4%3D1%2C1.2e-116%2C3.3e-47%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1293 SAMTools SNP 290092 290092 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C0%2C56%2C8%3BMQ%3D38%3BFQ%3D166%3BPV4%3D0.0011%2C3.3e-33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C193:99 scaffold1293 SAMTools SNP 290484 290484 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C73%3BMQ%3D12%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C220%2C0:99 scaffold1293 SAMTools SNP 290759 290759 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.33%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C235:81 scaffold1293 SAMTools SNP 292499 292499 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 293116 293116 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1293 SAMTools SNP 293943 293943 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.089%2C5.5e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1293 SAMTools SNP 295552 295552 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold1293 SAMTools SNP 296232 296232 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1293 SAMTools SNP 309449 309449 99.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1293 SAMTools SNP 312243 312243 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.35%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold1293 SAMTools SNP 315046 315046 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1293 SAMTools SNP 324942 324942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1293 SAMTools SNP 325020 325020 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1293 SAMTools SNP 325068 325068 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1293 SAMTools SNP 333890 333890 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1293 SAMTools SNP 336672 336672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 336882 336882 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 337307 337307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 337951 337951 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C57%2C0:99 scaffold1293 SAMTools SNP 338025 338025 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1293 SAMTools SNP 338372 338372 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1293 SAMTools SNP 340070 340070 86.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold1293 SAMTools SNP 341125 341125 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1293 SAMTools SNP 341161 341161 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C18%2C0:33 scaffold1293 SAMTools SNP 341194 341194 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 341220 341220 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1293 SAMTools SNP 341226 341226 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C217:99 scaffold1293 SAMTools SNP 341526 341526 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1293 SAMTools SNP 341610 341610 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0099%2C9.7e-05%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1293 SAMTools SNP 341621 341621 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1293 SAMTools SNP 343210 343210 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-56%3BPV4%3D0.41%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C29%2C0:55 scaffold1293 SAMTools SNP 343213 343213 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.021%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1293 SAMTools SNP 343235 343235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1293 SAMTools SNP 343264 343264 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0036%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1293 SAMTools SNP 344606 344606 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold1293 SAMTools SNP 345095 345095 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C19%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.64%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold1293 SAMTools SNP 345502 345502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1293 SAMTools SNP 346123 346123 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1293 SAMTools SNP 346163 346163 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1293 SAMTools SNP 346659 346659 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1293 SAMTools SNP 347137 347137 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 347203 347203 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 347692 347692 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 348522 348522 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1293 SAMTools SNP 348573 348573 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1293 SAMTools SNP 348940 348940 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1293 SAMTools SNP 351531 351531 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C51%2C0:99 scaffold1293 SAMTools SNP 351573 351573 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.14%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C124:91 scaffold1293 SAMTools SNP 351886 351886 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C35:38 scaffold1293 SAMTools SNP 352287 352287 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1293 SAMTools SNP 352778 352778 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1293 SAMTools SNP 353220 353220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1293 SAMTools SNP 353434 353434 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1293 SAMTools SNP 358179 358179 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold1293 SAMTools SNP 358431 358431 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C16%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.15%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1293 SAMTools SNP 358725 358725 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C33%2C2%2C28%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.00023%2C2.7e-57%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1293 SAMTools SNP 374512 374512 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 381981 381981 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 381990 381990 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 383728 383728 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 383794 383794 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 383867 383867 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1293 SAMTools SNP 384288 384288 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C24%2C0:45 scaffold1293 SAMTools SNP 384445 384445 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1293 SAMTools SNP 384447 384447 186 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold1293 SAMTools SNP 384898 384898 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1293 SAMTools SNP 384924 384924 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1293 SAMTools SNP 384967 384967 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1293 SAMTools SNP 385256 385256 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1293 SAMTools SNP 385320 385320 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.0017%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C166:99 scaffold1293 SAMTools SNP 385361 385361 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.27%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1293 SAMTools SNP 385403 385403 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.029%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1293 SAMTools SNP 387173 387173 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1293 SAMTools SNP 387374 387374 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1293 SAMTools SNP 387413 387413 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1293 SAMTools SNP 388916 388916 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1293 SAMTools SNP 388940 388940 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1293 SAMTools SNP 418177 418177 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1293 SAMTools SNP 418373 418373 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C37%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1293 SAMTools SNP 418581 418581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1293 SAMTools SNP 418678 418678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1293 SAMTools SNP 418707 418707 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1293 SAMTools SNP 419568 419568 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.017%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1293 SAMTools SNP 420052 420052 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1293 SAMTools SNP 420058 420058 34.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1293 SAMTools SNP 420211 420211 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1293 SAMTools SNP 420865 420865 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1293 SAMTools SNP 420934 420934 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 421148 421148 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 421153 421153 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 421771 421771 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1293 SAMTools SNP 421870 421870 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1293 SAMTools SNP 421891 421891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1293 SAMTools SNP 423095 423095 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.6e-11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1293 SAMTools SNP 423353 423353 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C69%2C0:99 scaffold1293 SAMTools SNP 425166 425166 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1293 SAMTools SNP 425174 425174 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.017%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C234:99 scaffold1293 SAMTools SNP 426230 426230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1293 SAMTools SNP 426521 426521 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1293 SAMTools SNP 426549 426549 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 426571 426571 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1293 SAMTools SNP 427043 427043 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1297 SAMTools SNP 601 601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1297 SAMTools SNP 4289 4289 12.3 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D19%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0%2C51%2C4%2C33:5 scaffold1297 SAMTools SNP 4934 4934 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C27%2C0:43 scaffold1297 SAMTools SNP 10001 10001 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C250:99 scaffold1297 SAMTools SNP 13624 13624 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1297 SAMTools SNP 13655 13655 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1297 SAMTools SNP 33733 33733 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C10%2C13%3BMQ%3D40%3BFQ%3D23%3BPV4%3D0.35%2C2.4e-21%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C231:53 scaffold1297 SAMTools SNP 35995 35995 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C37%2C6%3BMQ%3D47%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1297 SAMTools SNP 40285 40285 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1297 SAMTools SNP 41205 41205 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1297 SAMTools SNP 41208 41208 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1297 SAMTools SNP 42029 42029 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.6%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1297 SAMTools SNP 42044 42044 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.49%2C0.0013%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C239:71 scaffold1297 SAMTools SNP 42086 42086 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1297 SAMTools SNP 42092 42092 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C8%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.5%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1297 SAMTools SNP 43027 43027 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1297 SAMTools SNP 44270 44270 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1297 SAMTools SNP 44657 44657 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C33%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.43%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 44717 44717 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 45195 45195 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1297 SAMTools SNP 45237 45237 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1297 SAMTools SNP 45258 45258 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.29%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1297 SAMTools SNP 45658 45658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 46144 46144 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1297 SAMTools SNP 46177 46177 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C18%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.00011%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1297 SAMTools SNP 47265 47265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 47373 47373 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C2.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 47421 47421 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C35%2C14%2C20%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.41%2C6.3e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1297 SAMTools SNP 47556 47556 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C36%2C20%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 48314 48314 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1297 SAMTools SNP 48845 48845 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C0%2C43%3BMQ%3D50%3BFQ%3D53%3BPV4%3D3.2e-10%2C1e-15%2C1%2C4.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1297 SAMTools SNP 48934 48934 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.33%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold1297 SAMTools SNP 51519 51519 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D3.3e-05%2C2.9e-10%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1297 SAMTools SNP 53951 53951 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C46%2C3%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1297 SAMTools SNP 54281 54281 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.53%2C1e-16%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1297 SAMTools SNP 54392 54392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1297 SAMTools SNP 60426 60426 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.21%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1297 SAMTools SNP 64255 64255 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C48%2C56%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1.1e-07%2C7.8e-35%2C1%2C2.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1297 SAMTools SNP 64288 64288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1297 SAMTools SNP 64318 64318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C14%2C127%3BMQ%3D50%3BFQ%3D-150%3BPV4%3D5e-07%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1297 SAMTools SNP 65384 65384 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1297 SAMTools SNP 65695 65695 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0019%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1297 SAMTools SNP 66119 66119 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1297 SAMTools SNP 66541 66541 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C79%2C12%2C68%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.036%2C1%2C0.37%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 66963 66963 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C80%2C6%2C71%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.013%2C0.32%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 67014 67014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C48%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00083%2C1.5e-17%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 67068 67068 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1297 SAMTools SNP 67627 67627 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C17%2C5%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C3.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1297 SAMTools SNP 67699 67699 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C35%2C12%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 68154 68154 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C2.8e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1297 SAMTools SNP 68758 68758 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C6%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 68812 68812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C60%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 68815 68815 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C36%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0037%2C1%2C1%2C2.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1297 SAMTools SNP 68821 68821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1297 SAMTools SNP 68827 68827 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.44%2C0.03%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1297 SAMTools SNP 68845 68845 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.3%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1297 SAMTools SNP 70566 70566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1297 SAMTools SNP 70569 70569 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold1297 SAMTools SNP 70883 70883 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1297 SAMTools SNP 70922 70922 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C96%2C10%2C153%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 70946 70946 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C76%2C14%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 71227 71227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C46%2C21%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 71290 71290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1297 SAMTools SNP 71407 71407 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1297 SAMTools SNP 71604 71604 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C30%2C64%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 71661 71661 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C68%2C29%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.017%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 71906 71906 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C42%2C12%2C38%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0021%2C3.5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1297 SAMTools SNP 72312 72312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 72368 72368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C31%2C22%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 72404 72404 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C34%2C9%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.21%2C0.015%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1297 SAMTools SNP 72434 72434 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C24%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1297 SAMTools SNP 72877 72877 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1297 SAMTools SNP 73748 73748 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C32:35 scaffold1297 SAMTools SNP 74215 74215 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D525%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1299 SAMTools SNP 19561 19561 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1299 SAMTools SNP 22033 22033 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1299 SAMTools SNP 22069 22069 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1299 SAMTools SNP 22072 22072 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1299 SAMTools SNP 22084 22084 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1299 SAMTools SNP 22138 22138 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold1299 SAMTools SNP 22210 22210 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1299 SAMTools SNP 22493 22493 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold1299 SAMTools SNP 22544 22544 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1299 SAMTools SNP 32351 32351 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1299 SAMTools SNP 32379 32379 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1299 SAMTools SNP 32530 32530 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C48%2C0:92 scaffold1299 SAMTools SNP 35025 35025 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C66:47 scaffold1299 SAMTools SNP 35618 35618 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C3.9e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C129:48 scaffold1299 SAMTools SNP 38511 38511 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1299 SAMTools SNP 39082 39082 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1299 SAMTools SNP 39113 39113 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.23%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1299 SAMTools SNP 40900 40900 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.24%2C0.042%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1299 SAMTools SNP 42446 42446 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.27%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1299 SAMTools SNP 42448 42448 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.27%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1299 SAMTools SNP 42979 42979 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1299 SAMTools SNP 43045 43045 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold1299 SAMTools SNP 46772 46772 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.00011%2C1e-23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1299 SAMTools SNP 46785 46785 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C48%2C0:93 scaffold1299 SAMTools SNP 46841 46841 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1299 SAMTools SNP 47340 47340 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C201:99 scaffold1299 SAMTools SNP 47370 47370 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold1299 SAMTools SNP 47397 47397 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1299 SAMTools SNP 52102 52102 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1299 SAMTools SNP 52534 52534 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1299 SAMTools SNP 52570 52570 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1299 SAMTools SNP 53984 53984 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1299 SAMTools SNP 54032 54032 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1299 SAMTools SNP 54038 54038 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1299 SAMTools SNP 54732 54732 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1299 SAMTools SNP 54750 54750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1299 SAMTools SNP 55261 55261 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1299 SAMTools SNP 55276 55276 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1299 SAMTools SNP 55306 55306 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 55945 55945 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.036%2C0.069%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1299 SAMTools SNP 55996 55996 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1299 SAMTools SNP 56026 56026 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1299 SAMTools SNP 56493 56493 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1299 SAMTools SNP 56496 56496 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C158:99 scaffold1299 SAMTools SNP 56517 56517 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.47%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C252:99 scaffold1299 SAMTools SNP 56541 56541 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1299 SAMTools SNP 57098 57098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1299 SAMTools SNP 57101 57101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1299 SAMTools SNP 57278 57278 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1299 SAMTools SNP 57537 57537 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1299 SAMTools SNP 59241 59241 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1299 SAMTools SNP 62956 62956 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.8%3BPV4%3D0.33%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C41:43 scaffold1299 SAMTools SNP 63843 63843 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C114%2C0:99 scaffold1299 SAMTools SNP 64538 64538 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C0.18%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1299 SAMTools SNP 65320 65320 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C29%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C40%2C0:77 scaffold1299 SAMTools SNP 65341 65341 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C36%2C0:69 scaffold1299 SAMTools SNP 65446 65446 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1299 SAMTools SNP 65458 65458 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.5%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1299 SAMTools SNP 66242 66242 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 66652 66652 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C53%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 66679 66679 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C27%2C1%2C29%3BMQ%3D50%3BFQ%3D143%3BPV4%3D6.3e-13%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1299 SAMTools SNP 66741 66741 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C8%2C12%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1299 SAMTools SNP 67353 67353 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold1299 SAMTools SNP 67371 67371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1299 SAMTools SNP 67381 67381 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C54%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1299 SAMTools SNP 68083 68083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 68119 68119 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C72%2C0%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 68125 68125 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C70%2C0%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.21%2C1%2C7.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 68501 68501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C7%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1299 SAMTools SNP 68851 68851 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C195%2C4%2C80%3BMQ%3D50%3BFQ%3D69%3BPV4%3D3.2e-06%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1299 SAMTools SNP 68863 68863 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D544%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C297%2C245%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 69221 69221 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C245%2C2%2C65%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.00068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1299 SAMTools SNP 69235 69235 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C220%2C2%2C63%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0006%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1299 SAMTools SNP 69338 69338 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C132:99 scaffold1299 SAMTools SNP 69353 69353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C40%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1299 SAMTools SNP 69707 69707 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.026%2C1%2C8.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 69733 69733 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.075%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C4%2C0:7 scaffold1299 SAMTools SNP 69740 69740 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1299 SAMTools SNP 69824 69824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C160%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 70356 70356 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C29%2C2%2C17%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.00021%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1299 SAMTools SNP 70539 70539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C78%2C20%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 70563 70563 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 70593 70593 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C35%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 71236 71236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C47%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1299 SAMTools SNP 71287 71287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C35%3BMQ%3D50%3BFQ%3D-105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1299 SAMTools SNP 72510 72510 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1299 SAMTools SNP 72594 72594 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1299 SAMTools SNP 72610 72610 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C197:99 scaffold1299 SAMTools SNP 73142 73142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C473%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1299 SAMTools SNP 73830 73830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C60%2C21%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 73890 73890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C43%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-09%2C0.044%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 73902 73902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1299 SAMTools SNP 73962 73962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0044%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C18%2C57%2C61%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D3.8e-05%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold1299 SAMTools SNP 74446 74446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C13%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1299 SAMTools SNP 74479 74479 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C41%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1299 SAMTools SNP 75156 75156 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1299 SAMTools SNP 75921 75921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C38%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 75933 75933 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C20%2C0%2C74%3BMQ%3D50%3BFQ%3D35%3BPV4%3D4.8e-31%2C2.6e-55%2C1%2C4e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1299 SAMTools SNP 76028 76028 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C41%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.5e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1299 SAMTools SNP 82358 82358 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1299 SAMTools SNP 88194 88194 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C42%2C0:81 scaffold1299 SAMTools SNP 88428 88428 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C13%2C15%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.77%2C3e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1299 SAMTools SNP 88611 88611 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1299 SAMTools SNP 88704 88704 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1299 SAMTools SNP 88719 88719 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1299 SAMTools SNP 89244 89244 55.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold1299 SAMTools SNP 90178 90178 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1299 SAMTools SNP 90244 90244 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.081%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1299 SAMTools SNP 90261 90261 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C35:38 scaffold1299 SAMTools SNP 99749 99749 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 100895 100895 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C117%2C0:99 scaffold1299 SAMTools SNP 101106 101106 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1299 SAMTools SNP 101900 101900 34.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1299 SAMTools SNP 102479 102479 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C21%2C7%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1299 SAMTools SNP 102539 102539 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 103283 103283 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1299 SAMTools SNP 103347 103347 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1299 SAMTools SNP 103458 103458 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold1299 SAMTools SNP 103470 103470 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1299 SAMTools SNP 103759 103759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1299 SAMTools SNP 104721 104721 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold1299 SAMTools SNP 104860 104860 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C98:99 scaffold1299 SAMTools SNP 105627 105627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1299 SAMTools SNP 105757 105757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1299 SAMTools SNP 105781 105781 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.3%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1299 SAMTools SNP 106373 106373 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1299 SAMTools SNP 106562 106562 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C184:99 scaffold1299 SAMTools SNP 107132 107132 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1299 SAMTools SNP 107261 107261 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.18%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C93:72 scaffold1299 SAMTools SNP 107393 107393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1299 SAMTools SNP 108941 108941 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C29%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C229:99 scaffold1299 SAMTools SNP 108989 108989 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1299 SAMTools SNP 121549 121549 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1299 SAMTools SNP 121569 121569 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1299 SAMTools SNP 121579 121579 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1299 SAMTools SNP 121761 121761 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1299 SAMTools SNP 121764 121764 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1299 SAMTools SNP 122259 122259 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.56%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C219:99 scaffold1299 SAMTools SNP 122268 122268 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold1299 SAMTools SNP 122280 122280 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1299 SAMTools SNP 122283 122283 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1299 SAMTools SNP 122343 122343 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1299 SAMTools SNP 124559 124559 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1299 SAMTools SNP 124610 124610 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1299 SAMTools SNP 125156 125156 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C217:99 scaffold1299 SAMTools SNP 125190 125190 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1299 SAMTools SNP 153968 153968 211 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11%2C226%2C0%2C223:69 scaffold1299 SAMTools SNP 155910 155910 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold1299 SAMTools SNP 156389 156389 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold1299 SAMTools SNP 156410 156410 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1299 SAMTools SNP 156724 156724 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1299 SAMTools SNP 159792 159792 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1299 SAMTools SNP 159819 159819 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1299 SAMTools SNP 161337 161337 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C240:99 scaffold1299 SAMTools SNP 161476 161476 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.076%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1299 SAMTools SNP 161904 161904 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.017%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C254:99 scaffold1299 SAMTools SNP 162418 162418 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1299 SAMTools SNP 182995 182995 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1299 SAMTools SNP 183503 183503 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 911 911 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 975 975 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold13 SAMTools SNP 1002 1002 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 1436 1436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D685%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C617%2C60%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold13 SAMTools SNP 1731 1731 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D742%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C428%2C13%2C284%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.71%2C1%2C0.074%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 1961 1961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C13%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 2012 2012 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold13 SAMTools SNP 2503 2503 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C75%2C0%2C80%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.059%2C3.5e-109%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold13 SAMTools SNP 15367 15367 10.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold13 SAMTools SNP 16785 16785 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C33%2C0:63 scaffold13 SAMTools SNP 17206 17206 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold13 SAMTools SNP 17609 17609 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold13 SAMTools SNP 17627 17627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold13 SAMTools SNP 17937 17937 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold13 SAMTools SNP 17965 17965 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold13 SAMTools SNP 18126 18126 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 19535 19535 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold13 SAMTools SNP 20469 20469 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C63%2C0:99 scaffold13 SAMTools SNP 20590 20590 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.099%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold13 SAMTools SNP 20622 20622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 20980 20980 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C6%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.057%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold13 SAMTools SNP 21019 21019 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.001%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold13 SAMTools SNP 21885 21885 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C120:36 scaffold13 SAMTools SNP 21999 21999 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.13%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C148:33 scaffold13 SAMTools SNP 22026 22026 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.2%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C174:47 scaffold13 SAMTools SNP 22446 22446 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold13 SAMTools SNP 22481 22481 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 22490 22490 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D4.93%3BPV4%3D0.4%2C1.1e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C35:31 scaffold13 SAMTools SNP 22643 22643 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 22925 22925 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1e-18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C212:43 scaffold13 SAMTools SNP 29606 29606 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold13 SAMTools SNP 29623 29623 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold13 SAMTools SNP 30005 30005 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold13 SAMTools SNP 32566 32566 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold13 SAMTools SNP 38369 38369 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold13 SAMTools SNP 47952 47952 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.3%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C100:48 scaffold13 SAMTools SNP 58311 58311 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C39%2C0:75 scaffold13 SAMTools SNP 68858 68858 30.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold13 SAMTools SNP 69592 69592 21.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold13 SAMTools SNP 69785 69785 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C2.2e-09%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C212:76 scaffold13 SAMTools SNP 70827 70827 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold13 SAMTools SNP 71058 71058 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C127:99 scaffold13 SAMTools SNP 71317 71317 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 76812 76812 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.38%2C0.47%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold13 SAMTools SNP 76879 76879 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold13 SAMTools SNP 76903 76903 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C24%2C0:45 scaffold13 SAMTools SNP 77247 77247 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold13 SAMTools SNP 77262 77262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold13 SAMTools SNP 77319 77319 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold13 SAMTools SNP 78293 78293 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold13 SAMTools SNP 78318 78318 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold13 SAMTools SNP 78362 78362 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.26%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold13 SAMTools SNP 83792 83792 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold13 SAMTools SNP 83824 83824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 83955 83955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold13 SAMTools SNP 84216 84216 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 84256 84256 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold13 SAMTools SNP 84257 84257 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold13 SAMTools SNP 85411 85411 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold13 SAMTools SNP 85423 85423 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold13 SAMTools SNP 86981 86981 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 87010 87010 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold13 SAMTools SNP 87044 87044 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold13 SAMTools SNP 87074 87074 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold13 SAMTools SNP 87942 87942 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold13 SAMTools SNP 88443 88443 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold13 SAMTools SNP 88452 88452 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold13 SAMTools SNP 88467 88467 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold13 SAMTools SNP 88515 88515 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold13 SAMTools SNP 89024 89024 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold13 SAMTools SNP 89026 89026 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C231:72 scaffold13 SAMTools SNP 89088 89088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold13 SAMTools SNP 89269 89269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 89323 89323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C9%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0018%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold13 SAMTools SNP 89462 89462 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C0%2C19%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0062%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold13 SAMTools SNP 89481 89481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold13 SAMTools SNP 89512 89512 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold13 SAMTools SNP 89526 89526 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C154:99 scaffold13 SAMTools SNP 89580 89580 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0016%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold13 SAMTools SNP 90012 90012 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.062%2C0.15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C240:99 scaffold13 SAMTools SNP 90051 90051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold13 SAMTools SNP 90078 90078 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold13 SAMTools SNP 90322 90322 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold13 SAMTools SNP 90925 90925 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.29%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold13 SAMTools SNP 91755 91755 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold13 SAMTools SNP 91970 91970 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold13 SAMTools SNP 93331 93331 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C30%2C0:57 scaffold13 SAMTools SNP 95767 95767 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C101%2C6%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 95839 95839 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.002%2C3.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold13 SAMTools SNP 96366 96366 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C12%2C53%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 96796 96796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold13 SAMTools SNP 96850 96850 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C45%2C12%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 98533 98533 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D46%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold13 SAMTools SNP 98565 98565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C38%3BMQ%3D47%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold13 SAMTools SNP 98770 98770 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold13 SAMTools SNP 98794 98794 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold13 SAMTools SNP 98845 98845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C26%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold13 SAMTools SNP 99424 99424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C54%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 99829 99829 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C39%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0041%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 99831 99831 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 100238 100238 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.0079%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 101110 101110 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.37%2C4.7e-06%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold13 SAMTools SNP 105885 105885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 134847 134847 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold13 SAMTools SNP 167552 167552 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold13 SAMTools SNP 167561 167561 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold13 SAMTools SNP 177406 177406 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold13 SAMTools SNP 177412 177412 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold13 SAMTools SNP 177779 177779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold13 SAMTools SNP 177806 177806 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold13 SAMTools SNP 177855 177855 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold13 SAMTools SNP 178560 178560 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold13 SAMTools SNP 178648 178648 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C51%2C0:99 scaffold13 SAMTools SNP 178696 178696 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold13 SAMTools SNP 178708 178708 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold13 SAMTools SNP 179798 179798 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C140:60 scaffold13 SAMTools SNP 179801 179801 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold13 SAMTools SNP 179804 179804 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold13 SAMTools SNP 180377 180377 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold13 SAMTools SNP 183632 183632 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold13 SAMTools SNP 183726 183726 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold13 SAMTools SNP 183747 183747 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold13 SAMTools SNP 184615 184615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold13 SAMTools SNP 184636 184636 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.31%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C234:99 scaffold13 SAMTools SNP 184658 184658 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C21%2C0:39 scaffold13 SAMTools SNP 184676 184676 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold13 SAMTools SNP 184696 184696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold13 SAMTools SNP 188104 188104 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C224:99 scaffold13 SAMTools SNP 188149 188149 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold13 SAMTools SNP 192208 192208 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C157:42 scaffold13 SAMTools SNP 192540 192540 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold13 SAMTools SNP 193420 193420 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C6%3BMQ%3D48%3BFQ%3D6.2%3BPV4%3D0.55%2C0.00033%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold13 SAMTools SNP 193427 193427 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C3%2C1%3BMQ%3D48%3BFQ%3D19.1%3BPV4%3D0.015%2C0.011%2C0.052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold13 SAMTools SNP 211848 211848 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold13 SAMTools SNP 211881 211881 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold13 SAMTools SNP 306921 306921 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold13 SAMTools SNP 340552 340552 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1301 SAMTools SNP 4227 4227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 4250 4250 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 4324 4324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 20115 20115 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C87%3BMQ%3D13%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C255%2C0:72 scaffold1301 SAMTools SNP 20301 20301 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D40%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C60%2C0:99 scaffold1301 SAMTools SNP 20526 20526 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C31%2C56%2C29%3BMQ%3D40%3BFQ%3D182%3BPV4%3D0.63%2C8.3e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C240:99 scaffold1301 SAMTools SNP 21243 21243 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C71%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1301 SAMTools SNP 33200 33200 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1301 SAMTools SNP 71132 71132 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1301 SAMTools SNP 74370 74370 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 128310 128310 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 130235 130235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 130593 130593 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 130602 130602 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 130607 130607 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 131695 131695 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.016%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1301 SAMTools SNP 132119 132119 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.17%2C0.0061%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1301 SAMTools SNP 132978 132978 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1301 SAMTools SNP 133348 133348 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1301 SAMTools SNP 133390 133390 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1301 SAMTools SNP 134855 134855 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1301 SAMTools SNP 136032 136032 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C9%2C0:16 scaffold1301 SAMTools SNP 137939 137939 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1301 SAMTools SNP 138045 138045 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1301 SAMTools SNP 138264 138264 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold1301 SAMTools SNP 138942 138942 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold1301 SAMTools SNP 139285 139285 6.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1301 SAMTools SNP 139710 139710 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1301 SAMTools SNP 139714 139714 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1301 SAMTools SNP 139777 139777 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 140242 140242 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 140594 140594 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 141890 141890 44.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1301 SAMTools SNP 142192 142192 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C110:46 scaffold1301 SAMTools SNP 152569 152569 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33.9%3BPV4%3D1%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C65:64 scaffold1301 SAMTools SNP 154767 154767 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 155569 155569 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 155635 155635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C127%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 155750 155750 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 155822 155822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1301 SAMTools SNP 155855 155855 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 156365 156365 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C17%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.082%2C0.21%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1301 SAMTools SNP 156368 156368 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C13%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.15%2C0.4%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1301 SAMTools SNP 156398 156398 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C0%2C15%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0021%2C0.22%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1301 SAMTools SNP 156552 156552 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 156624 156624 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C21%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold1301 SAMTools SNP 156890 156890 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C72%2C0:99 scaffold1301 SAMTools SNP 156998 156998 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8.6e-19%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C238:33 scaffold1301 SAMTools SNP 157246 157246 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C16%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C250%2C0:99 scaffold1301 SAMTools SNP 157302 157302 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C15%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.56%2C6.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1301 SAMTools SNP 157327 157327 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C77:49 scaffold1301 SAMTools SNP 157450 157450 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1301 SAMTools SNP 157482 157482 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1301 SAMTools SNP 157787 157787 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 157827 157827 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 158079 158079 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1301 SAMTools SNP 158122 158122 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C60:63 scaffold1301 SAMTools SNP 158371 158371 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1301 SAMTools SNP 158386 158386 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1301 SAMTools SNP 158388 158388 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 158408 158408 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 158661 158661 194 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C112:99 scaffold1301 SAMTools SNP 159005 159005 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold1301 SAMTools SNP 160737 160737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1301 SAMTools SNP 161080 161080 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C147:99 scaffold1301 SAMTools SNP 161103 161103 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C6%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.033%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C218:99 scaffold1301 SAMTools SNP 161393 161393 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1301 SAMTools SNP 162200 162200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 162224 162224 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1301 SAMTools SNP 162555 162555 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 163284 163284 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 174476 174476 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1301 SAMTools SNP 176990 176990 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1301 SAMTools SNP 177053 177053 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold1301 SAMTools SNP 179731 179731 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1301 SAMTools SNP 179766 179766 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1301 SAMTools SNP 180390 180390 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 186055 186055 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold1301 SAMTools SNP 196494 196494 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D49%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1301 SAMTools SNP 196506 196506 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D49%3BFQ%3D114%3BPV4%3D0.51%2C0.065%2C0.092%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1301 SAMTools SNP 197932 197932 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1301 SAMTools SNP 198531 198531 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.079%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1301 SAMTools SNP 198570 198570 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C6.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 198585 198585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C18%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 199814 199814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C22%2C42%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.25%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 199838 199838 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C35%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 199901 199901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C46%2C76%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C2.1e-127%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 201357 201357 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C53%2C13%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 201683 201683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C46%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1301 SAMTools SNP 201728 201728 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C26%2C41%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D6.1e-05%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1301 SAMTools SNP 202707 202707 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1301 SAMTools SNP 202778 202778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1301 SAMTools SNP 202945 202945 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1301 SAMTools SNP 202972 202972 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 204429 204429 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold1301 SAMTools SNP 204664 204664 12.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1301 SAMTools SNP 205008 205008 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C55%2C25%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 205259 205259 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 205653 205653 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1.3e-07%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C198:99 scaffold1301 SAMTools SNP 205692 205692 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C69%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00023%2C0.28%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1301 SAMTools SNP 208962 208962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.047%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 209196 209196 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C35%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1301 SAMTools SNP 209426 209426 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C48%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.068%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 209573 209573 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 209594 209594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C8%2C59%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 210826 210826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 211497 211497 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold1301 SAMTools SNP 211567 211567 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D657%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C359%2C288%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 212598 212598 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.11%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1301 SAMTools SNP 214545 214545 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C255%2C0:99 scaffold1301 SAMTools SNP 227117 227117 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.0048%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold1301 SAMTools SNP 227222 227222 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1301 SAMTools SNP 235628 235628 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 235644 235644 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1301 SAMTools SNP 235654 235654 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 235944 235944 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C18:21 scaffold1301 SAMTools SNP 236062 236062 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1301 SAMTools SNP 238425 238425 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 238562 238562 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 246057 246057 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 246304 246304 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 246617 246617 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1301 SAMTools SNP 246622 246622 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1301 SAMTools SNP 249206 249206 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold1301 SAMTools SNP 250667 250667 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1301 SAMTools SNP 251005 251005 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1301 SAMTools SNP 251054 251054 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1301 SAMTools SNP 251080 251080 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1301 SAMTools SNP 255661 255661 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C127:28 scaffold1301 SAMTools SNP 255736 255736 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1301 SAMTools SNP 256753 256753 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1301 SAMTools SNP 264564 264564 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 264726 264726 86.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C15%2C0:27 scaffold1301 SAMTools SNP 266230 266230 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1301 SAMTools SNP 269299 269299 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 270193 270193 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1301 SAMTools SNP 270335 270335 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 270358 270358 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C15%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.54%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1301 SAMTools SNP 270667 270667 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1301 SAMTools SNP 270676 270676 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.54%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1301 SAMTools SNP 271483 271483 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 272319 272319 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C24%2C0:45 scaffold1301 SAMTools SNP 272350 272350 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1301 SAMTools SNP 272780 272780 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1301 SAMTools SNP 282877 282877 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1301 SAMTools SNP 289289 289289 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C51%2C0:99 scaffold1301 SAMTools SNP 304441 304441 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 304442 304442 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 304460 304460 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 304704 304704 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C74%2C3%2C14%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1301 SAMTools SNP 304898 304898 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C54%2C0%2C43%3BMQ%3D47%3BFQ%3D30%3BPV4%3D0.003%2C2.4e-37%2C0.46%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1301 SAMTools SNP 304904 304904 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C59%2C11%2C63%3BMQ%3D47%3BFQ%3D174%3BPV4%3D0.66%2C1.1e-65%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1301 SAMTools SNP 307697 307697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C39%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.63%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1301 SAMTools SNP 307914 307914 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1301 SAMTools SNP 309168 309168 13.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1301 SAMTools SNP 316726 316726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C38%3BMQ%3D43%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1301 SAMTools SNP 318096 318096 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1301 SAMTools SNP 318552 318552 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.62%2C6.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1301 SAMTools SNP 324690 324690 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 337820 337820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 339416 339416 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1301 SAMTools SNP 339693 339693 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C15%2C0:27 scaffold1301 SAMTools SNP 343693 343693 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D4%2C0%2C36%2C11%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D0.57%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C13:16 scaffold1301 SAMTools SNP 343727 343727 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold1301 SAMTools SNP 344298 344298 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1301 SAMTools SNP 344308 344308 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1301 SAMTools SNP 344390 344390 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 344421 344421 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1301 SAMTools SNP 347363 347363 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1301 SAMTools SNP 347876 347876 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 351364 351364 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 351394 351394 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 354385 354385 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1301 SAMTools SNP 354522 354522 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1301 SAMTools SNP 354682 354682 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1301 SAMTools SNP 354771 354771 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C48%2C0:93 scaffold1301 SAMTools SNP 354787 354787 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C21%2C0:34 scaffold1301 SAMTools SNP 356931 356931 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 357960 357960 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 358265 358265 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.48%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1301 SAMTools SNP 358403 358403 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1301 SAMTools SNP 358462 358462 62.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold1301 SAMTools SNP 358603 358603 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 358996 358996 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 359009 359009 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C33:36 scaffold1301 SAMTools SNP 359108 359108 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.013%2C1%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C244:99 scaffold1301 SAMTools SNP 359167 359167 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 359937 359937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C64%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1301 SAMTools SNP 360048 360048 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C255%2C0:99 scaffold1301 SAMTools SNP 360553 360553 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D48%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1301 SAMTools SNP 364715 364715 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.28%2C0.041%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1301 SAMTools SNP 367764 367764 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1301 SAMTools SNP 406382 406382 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1301 SAMTools SNP 406384 406384 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 406749 406749 63.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1301 SAMTools SNP 407640 407640 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C18%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C2.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C230:99 scaffold1301 SAMTools SNP 408183 408183 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1301 SAMTools SNP 414024 414024 11.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold1301 SAMTools SNP 431621 431621 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1301 SAMTools SNP 434906 434906 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C238:99 scaffold1301 SAMTools SNP 434912 434912 165 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1301 SAMTools SNP 435202 435202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C30%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 437874 437874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C192%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 437889 437889 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C140%2C16%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 437973 437973 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 443444 443444 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C49%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1301 SAMTools SNP 459824 459824 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C8%2C0%3BMQ%3D39%3BFQ%3D118%3BPV4%3D0.28%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C237:99 scaffold1301 SAMTools SNP 460427 460427 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C23%2C6%3BMQ%3D49%3BFQ%3D104%3BPV4%3D0.00021%2C0.34%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold1301 SAMTools SNP 460431 460431 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0001%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1301 SAMTools SNP 460440 460440 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C0%2C13%3BMQ%3D49%3BFQ%3D140%3BPV4%3D0.00022%2C0.49%2C0.35%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1301 SAMTools SNP 460814 460814 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C22%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1301 SAMTools SNP 468725 468725 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C1%2C9%3BMQ%3D47%3BFQ%3D35%3BPV4%3D0.43%2C1%2C5.7e-09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1301 SAMTools SNP 468776 468776 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C6%2C38%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 469956 469956 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C14%2C5%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.29%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 469960 469960 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C7%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.24%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 469969 469969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C8%3BMQ%3D46%3BFQ%3D183%3BPV4%3D0.61%2C0.36%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1301 SAMTools SNP 470339 470339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C10%2C9%3BMQ%3D35%3BFQ%3D-67%3BPV4%3D0.48%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold1301 SAMTools SNP 472185 472185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1301 SAMTools SNP 475108 475108 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 475132 475132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1301 SAMTools SNP 475455 475455 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 475480 475480 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1301 SAMTools SNP 475597 475597 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 476285 476285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 476308 476308 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C184:30 scaffold1301 SAMTools SNP 476731 476731 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1301 SAMTools SNP 477624 477624 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1301 SAMTools SNP 480595 480595 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1301 SAMTools SNP 484217 484217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C27%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1301 SAMTools SNP 485092 485092 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1301 SAMTools SNP 486616 486616 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D662%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C305%2C16%2C213%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.042%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 491871 491871 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C93%2C63%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 492398 492398 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C3%2C29%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.35%2C1.4e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1301 SAMTools SNP 496213 496213 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C34%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C7.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 496219 496219 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.19%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1301 SAMTools SNP 496250 496250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1301 SAMTools SNP 514007 514007 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 514852 514852 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 515783 515783 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 534281 534281 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1301 SAMTools SNP 539719 539719 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 540063 540063 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 540227 540227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.48%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 540386 540386 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1301 SAMTools SNP 540770 540770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 540779 540779 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.6%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1301 SAMTools SNP 540782 540782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 542301 542301 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 542352 542352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C41%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1301 SAMTools SNP 542978 542978 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 545298 545298 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C230:99 scaffold1301 SAMTools SNP 545301 545301 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C233:99 scaffold1301 SAMTools SNP 545999 545999 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 551308 551308 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 551371 551371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1301 SAMTools SNP 554616 554616 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 554625 554625 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C16%2C15%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.3%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1301 SAMTools SNP 555232 555232 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 555262 555262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 555623 555623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1301 SAMTools SNP 555798 555798 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 556044 556044 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 556639 556639 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1301 SAMTools SNP 556738 556738 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C195:63 scaffold1301 SAMTools SNP 556901 556901 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 557339 557339 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 557469 557469 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 564000 564000 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1301 SAMTools SNP 573401 573401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C9%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 573443 573443 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C0%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.08%2C1%2C3.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 573461 573461 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 575561 575561 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1301 SAMTools SNP 575562 575562 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1301 SAMTools SNP 576033 576033 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 576669 576669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C39%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 577029 577029 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C25%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 579487 579487 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1301 SAMTools SNP 580438 580438 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C15%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C7.3e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1301 SAMTools SNP 580798 580798 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D848%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D489%2C13%2C330%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 581538 581538 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C77%2C44%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 581592 581592 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 581796 581796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1301 SAMTools SNP 581844 581844 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1301 SAMTools SNP 581921 581921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1301 SAMTools SNP 581931 581931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 582313 582313 33.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1301 SAMTools SNP 582680 582680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D768%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D348%2C56%2C306%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C2.5e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 582761 582761 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D805%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C626%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 583087 583087 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C130%2C2%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 583102 583102 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C197%2C4%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 585217 585217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C24%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 586534 586534 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C178%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 586743 586743 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 587031 587031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 587067 587067 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C5%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C223%2C0:99 scaffold1301 SAMTools SNP 587127 587127 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C49%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1301 SAMTools SNP 587133 587133 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 588309 588309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C62%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1301 SAMTools SNP 588799 588799 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C34%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 588939 588939 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C11%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1301 SAMTools SNP 589271 589271 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 589283 589283 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 596327 596327 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1301 SAMTools SNP 596344 596344 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 601464 601464 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1301 SAMTools SNP 605034 605034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1301 SAMTools SNP 605067 605067 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 606668 606668 55.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold1301 SAMTools SNP 608517 608517 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 609188 609188 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1301 SAMTools SNP 615400 615400 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 650859 650859 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1301 SAMTools SNP 671728 671728 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1301 SAMTools SNP 671733 671733 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1301 SAMTools SNP 673548 673548 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1301 SAMTools SNP 673566 673566 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1301 SAMTools SNP 687610 687610 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D45%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C63%2C0:99 scaffold1301 SAMTools SNP 687728 687728 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C21%3BMQ%3D42%3BFQ%3D-33%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C6%2C0:10 scaffold1301 SAMTools SNP 688084 688084 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C24%2C0:45 scaffold1301 SAMTools SNP 688100 688100 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C2%3BMQ%3D45%3BFQ%3D-4.75%3BPV4%3D0.49%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C24:27 scaffold1301 SAMTools SNP 688760 688760 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1301 SAMTools SNP 688776 688776 60.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C2%2C0:5 scaffold1301 SAMTools SNP 690064 690064 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 690073 690073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 690163 690163 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.12%2C5.4e-05%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C121:99 scaffold1301 SAMTools SNP 690173 690173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.31%2C0.033%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1301 SAMTools SNP 693251 693251 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C36%2C0:69 scaffold1301 SAMTools SNP 693290 693290 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C13%2C0%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.025%2C0.38%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C52:55 scaffold1301 SAMTools SNP 693757 693757 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C1%3BMQ%3D49%3BFQ%3D31%3BPV4%3D1%2C1%2C0.0067%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1301 SAMTools SNP 693780 693780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 693895 693895 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 693937 693937 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1301 SAMTools SNP 694314 694314 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1301 SAMTools SNP 694354 694354 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1301 SAMTools SNP 694399 694399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1301 SAMTools SNP 695396 695396 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D3.6e-08%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C245:99 scaffold1301 SAMTools SNP 695473 695473 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1301 SAMTools SNP 695884 695884 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1301 SAMTools SNP 697107 697107 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 697243 697243 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1301 SAMTools SNP 697963 697963 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1301 SAMTools SNP 697987 697987 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1301 SAMTools SNP 701387 701387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1301 SAMTools SNP 701414 701414 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1301 SAMTools SNP 748454 748454 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C27%2C0:51 scaffold1301 SAMTools SNP 749324 749324 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 749384 749384 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 752301 752301 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 752324 752324 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 752422 752422 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold1301 SAMTools SNP 752687 752687 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1301 SAMTools SNP 753311 753311 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 753422 753422 74.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold1301 SAMTools SNP 763349 763349 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1301 SAMTools SNP 768498 768498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1301 SAMTools SNP 769233 769233 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1301 SAMTools SNP 778169 778169 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1301 SAMTools SNP 778193 778193 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C18%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1301 SAMTools SNP 778304 778304 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1301 SAMTools SNP 779874 779874 6.97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D3%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C63%2C0:51 scaffold1301 SAMTools SNP 781239 781239 6.19 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D3%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C81%2C0:48 scaffold1301 SAMTools SNP 786062 786062 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 800709 800709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C31%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1301 SAMTools SNP 801041 801041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 801259 801259 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 801331 801331 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 801339 801339 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 803134 803134 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 805251 805251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 805260 805260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C58%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1301 SAMTools SNP 805711 805711 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1301 SAMTools SNP 805732 805732 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1301 SAMTools SNP 805798 805798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1301 SAMTools SNP 805816 805816 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C8%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1301 SAMTools SNP 806194 806194 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C47%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1301 SAMTools SNP 806404 806404 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.089%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1301 SAMTools SNP 806856 806856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C18%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1301 SAMTools SNP 806875 806875 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C15%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1301 SAMTools SNP 807029 807029 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1301 SAMTools SNP 808511 808511 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C107%3BMQ%3D11%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C255%2C0:99 scaffold1301 SAMTools SNP 808905 808905 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C27%2C0:51 scaffold1301 SAMTools SNP 809292 809292 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 809379 809379 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1301 SAMTools SNP 811104 811104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 811176 811176 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1301 SAMTools SNP 811230 811230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C48%3BMQ%3D47%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1301 SAMTools SNP 811611 811611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D46%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1301 SAMTools SNP 812457 812457 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1301 SAMTools SNP 812500 812500 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C6%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1301 SAMTools SNP 813061 813061 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.17%2C6.1e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1301 SAMTools SNP 813140 813140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1301 SAMTools SNP 813667 813667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C243%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 821457 821457 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C57%2C2%2C18%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1301 SAMTools SNP 821992 821992 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C185:99 scaffold1301 SAMTools SNP 823565 823565 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C22%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.011%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1301 SAMTools SNP 823687 823687 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1301 SAMTools SNP 824304 824304 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1301 SAMTools SNP 825656 825656 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 826998 826998 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C52%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 837282 837282 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C23%2C2%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1301 SAMTools SNP 837787 837787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C45%2C20%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 842165 842165 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C10%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 844370 844370 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C45%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 844388 844388 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C20%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 847424 847424 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C106%2C16%2C21%3BMQ%3D45%3BFQ%3D220%3BPV4%3D0.02%2C1%2C0.0092%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1301 SAMTools SNP 849045 849045 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D378%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C199%3BMQ%3D38%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 850524 850524 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D194%2C25%2C111%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00034%2C1%2C1%2C8.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1301 SAMTools SNP 852031 852031 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 855011 855011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1688%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D682%2C51%2C907%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 871675 871675 30.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C17%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C6.5e-22%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C9:12 scaffold1301 SAMTools SNP 872075 872075 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C16%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.11%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C46:49 scaffold1301 SAMTools SNP 889854 889854 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1301 SAMTools SNP 889941 889941 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1301 SAMTools SNP 890702 890702 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1301 SAMTools SNP 890727 890727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1301 SAMTools SNP 892119 892119 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C36%2C0:69 scaffold1301 SAMTools SNP 892178 892178 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold1301 SAMTools SNP 892286 892286 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 892483 892483 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 893571 893571 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1301 SAMTools SNP 897413 897413 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 897796 897796 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1301 SAMTools SNP 897977 897977 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold1301 SAMTools SNP 898196 898196 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D677%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.17%2C5.4e-07%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C102:88 scaffold1301 SAMTools SNP 898217 898217 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D839%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C691%2C50%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.9e-171%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C255%2C0:99 scaffold1301 SAMTools SNP 898298 898298 81.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0233%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C5.2e-05%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C11:14 scaffold1301 SAMTools SNP 898486 898486 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1301 SAMTools SNP 907575 907575 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5.5e-09%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C215:61 scaffold1301 SAMTools SNP 909122 909122 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1301 SAMTools SNP 911289 911289 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1301 SAMTools SNP 911526 911526 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C0.14%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C181:62 scaffold1301 SAMTools SNP 911860 911860 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1301 SAMTools SNP 917071 917071 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C1%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1301 SAMTools SNP 918275 918275 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C7%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0072%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1301 SAMTools SNP 919760 919760 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1301 SAMTools SNP 919763 919763 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1301 SAMTools SNP 919814 919814 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C494%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 922969 922969 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D268%2C9%2C235%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 923385 923385 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C41%2C83%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D6.3e-06%2C9.1e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1301 SAMTools SNP 927538 927538 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 930411 930411 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C156:31 scaffold1301 SAMTools SNP 931132 931132 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C63%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 931572 931572 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C50%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C151%2C0:99 scaffold1301 SAMTools SNP 931979 931979 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.41%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C238:99 scaffold1301 SAMTools SNP 938911 938911 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 941801 941801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C5.6e-15%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1301 SAMTools SNP 942047 942047 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1301 SAMTools SNP 942059 942059 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 942460 942460 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 942566 942566 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.26%2C5.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C175:61 scaffold1301 SAMTools SNP 943135 943135 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1301 SAMTools SNP 943465 943465 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C49%2C11%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 943605 943605 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C49%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 943657 943657 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C35%2C19%2C6%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0046%2C6.4e-11%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1301 SAMTools SNP 948371 948371 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C62%2C0%2C49%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.01%2C1.7e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1301 SAMTools SNP 948881 948881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C4%2C37%3BMQ%3D49%3BFQ%3D-30%3BPV4%3D0.045%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1301 SAMTools SNP 949496 949496 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 950161 950161 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1301 SAMTools SNP 951511 951511 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1301 SAMTools SNP 951544 951544 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C37%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold1301 SAMTools SNP 951702 951702 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D48%3BFQ%3D64%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C251:94 scaffold1301 SAMTools SNP 952133 952133 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold1301 SAMTools SNP 952216 952216 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C3%3BMQ%3D45%3BFQ%3D127%3BPV4%3D0.27%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1301 SAMTools SNP 953044 953044 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C0%3BMQ%3D45%3BFQ%3D129%3BPV4%3D0.13%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1301 SAMTools SNP 955021 955021 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D45%3BFQ%3D49.7%3BPV4%3D1%2C1%2C0.25%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1301 SAMTools SNP 955030 955030 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C184:67 scaffold1301 SAMTools SNP 955229 955229 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 971760 971760 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 971775 971775 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 972469 972469 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 972481 972481 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 972870 972870 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1301 SAMTools SNP 973084 973084 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 973085 973085 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 973479 973479 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 974024 974024 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1301 SAMTools SNP 974726 974726 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1301 SAMTools SNP 974877 974877 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D35%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1301 SAMTools SNP 994929 994929 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1301 SAMTools SNP 994985 994985 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 996543 996543 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D32%3BFQ%3D18.1%3BPV4%3D1%2C0.32%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C113:48 scaffold1301 SAMTools SNP 996545 996545 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D27%3BFQ%3D9.53%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C36:39 scaffold1301 SAMTools SNP 998279 998279 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1000343 1000343 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1000385 1000385 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 1000914 1000914 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C0.48%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C198:99 scaffold1301 SAMTools SNP 1008980 1008980 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1301 SAMTools SNP 1010802 1010802 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C63%2C7%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1014262 1014262 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C43%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.099%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1014388 1014388 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C34%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1016738 1016738 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1016840 1016840 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1018927 1018927 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1020829 1020829 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.66%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1301 SAMTools SNP 1022866 1022866 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1301 SAMTools SNP 1032043 1032043 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1301 SAMTools SNP 1038241 1038241 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1038528 1038528 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 1038542 1038542 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 1039183 1039183 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 1042547 1042547 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1301 SAMTools SNP 1055598 1055598 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1301 SAMTools SNP 1056363 1056363 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1301 SAMTools SNP 1056537 1056537 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.55%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1301 SAMTools SNP 1056653 1056653 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1301 SAMTools SNP 1056870 1056870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1301 SAMTools SNP 1056902 1056902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C37%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1301 SAMTools SNP 1056957 1056957 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.31%2C2.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C234:90 scaffold1301 SAMTools SNP 1057633 1057633 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C183:65 scaffold1301 SAMTools SNP 1058433 1058433 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C22%2C55%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1058451 1058451 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C42%2C71%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1058925 1058925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C50%2C14%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1061517 1061517 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1301 SAMTools SNP 1062155 1062155 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C3%2C42%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.63%2C1.7e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1301 SAMTools SNP 1062507 1062507 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1301 SAMTools SNP 1062900 1062900 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.17%2C0.08%2C1%2C2.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1301 SAMTools SNP 1062957 1062957 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1301 SAMTools SNP 1064993 1064993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1301 SAMTools SNP 1071768 1071768 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1301 SAMTools SNP 1072119 1072119 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1301 SAMTools SNP 1073400 1073400 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 1078979 1078979 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.36%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1301 SAMTools SNP 1079019 1079019 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1301 SAMTools SNP 1083157 1083157 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1301 SAMTools SNP 1086511 1086511 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1301 SAMTools SNP 1089476 1089476 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 1097080 1097080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1097777 1097777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1301 SAMTools SNP 1097876 1097876 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C25%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C157%2C0:99 scaffold1301 SAMTools SNP 1097908 1097908 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1301 SAMTools SNP 1097978 1097978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1301 SAMTools SNP 1098379 1098379 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1099745 1099745 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.19%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold1301 SAMTools SNP 1101030 1101030 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C202%2C12%2C255%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1301 SAMTools SNP 1101105 1101105 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1301 SAMTools SNP 1101376 1101376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1301 SAMTools SNP 1101478 1101478 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C87%2C0:99 scaffold1301 SAMTools SNP 1101541 1101541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 1101583 1101583 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C20%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1301 SAMTools SNP 1101907 1101907 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C20%2C25%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1301 SAMTools SNP 1101961 1101961 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C20%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1301 SAMTools SNP 1102045 1102045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C72%2C5%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-24%2C4.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1102057 1102057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C103%2C87%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-27%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1102081 1102081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C100%2C91%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1102661 1102661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1102811 1102811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C159%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1106115 1106115 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C45%2C0:87 scaffold1301 SAMTools SNP 1107616 1107616 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.055%2C2.9e-06%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C203:66 scaffold1301 SAMTools SNP 1109074 1109074 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C19%2C26%2C18%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.54%2C5.3e-50%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1301 SAMTools SNP 1109175 1109175 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C4%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0072%2C0.14%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1301 SAMTools SNP 1109338 1109338 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C223:99 scaffold1301 SAMTools SNP 1109456 1109456 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C41%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1111597 1111597 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C13%2C81%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1112183 1112183 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C74%2C3%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1113522 1113522 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.0014%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1301 SAMTools SNP 1113580 1113580 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1301 SAMTools SNP 1113928 1113928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1114874 1114874 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1114880 1114880 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C32%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.011%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1301 SAMTools SNP 1119490 1119490 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1122511 1122511 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1131028 1131028 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C1%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.29%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1301 SAMTools SNP 1131043 1131043 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C22%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D2e-09%2C4.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1301 SAMTools SNP 1131259 1131259 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.3%2C3.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1301 SAMTools SNP 1131421 1131421 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.68%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1301 SAMTools SNP 1131550 1131550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1137688 1137688 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.015%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1301 SAMTools SNP 1142603 1142603 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C0.23%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1301 SAMTools SNP 1142640 1142640 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 1143097 1143097 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D5.5e-08%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1301 SAMTools SNP 1147263 1147263 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C69%2C9%2C54%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.016%2C0.24%2C0.41%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1151824 1151824 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.007%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C89:39 scaffold1301 SAMTools SNP 1151826 1151826 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C17%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C177:69 scaffold1301 SAMTools SNP 1151918 1151918 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C51%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.62%2C2.2e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1301 SAMTools SNP 1151979 1151979 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C0.12%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold1301 SAMTools SNP 1151996 1151996 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C42%2C0:81 scaffold1301 SAMTools SNP 1152095 1152095 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C24%2C36%2C15%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.16%2C1.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1301 SAMTools SNP 1152446 1152446 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C17%2C73%2C8%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.084%2C2.3e-146%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1301 SAMTools SNP 1153031 1153031 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C15%2C7%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.63%2C4e-18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1301 SAMTools SNP 1153412 1153412 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D22.8%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C62:53 scaffold1301 SAMTools SNP 1154533 1154533 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold1301 SAMTools SNP 1156435 1156435 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1301 SAMTools SNP 1159683 1159683 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C10%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.26%2C0.027%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1301 SAMTools SNP 1159707 1159707 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.34%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C222:99 scaffold1301 SAMTools SNP 1159737 1159737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1159918 1159918 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1301 SAMTools SNP 1160060 1160060 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C67%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1301 SAMTools SNP 1160738 1160738 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C145:99 scaffold1301 SAMTools SNP 1161604 1161604 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1301 SAMTools SNP 1161693 1161693 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C87%2C0:99 scaffold1301 SAMTools SNP 1174934 1174934 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1176797 1176797 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1301 SAMTools SNP 1176818 1176818 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1301 SAMTools SNP 1179288 1179288 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.1%2C0.0019%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold1301 SAMTools SNP 1181274 1181274 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1301 SAMTools SNP 1181291 1181291 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 1181351 1181351 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1185914 1185914 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.27%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C41:44 scaffold1301 SAMTools SNP 1185953 1185953 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1301 SAMTools SNP 1187741 1187741 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 1188095 1188095 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 1200831 1200831 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C66%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1200871 1200871 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C37%2C0%2C19%3BMQ%3D50%3BFQ%3D120%3BPV4%3D7.8e-05%2C0.04%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1301 SAMTools SNP 1206196 1206196 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C6%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.068%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1301 SAMTools SNP 1206224 1206224 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C22%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.081%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1301 SAMTools SNP 1208273 1208273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1301 SAMTools SNP 1212929 1212929 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1301 SAMTools SNP 1212930 1212930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold1301 SAMTools SNP 1212937 1212937 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.3%2C0.056%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1301 SAMTools SNP 1214011 1214011 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.35%2C0.37%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1301 SAMTools SNP 1215571 1215571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1215652 1215652 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.23%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1301 SAMTools SNP 1215679 1215679 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold1301 SAMTools SNP 1215809 1215809 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1301 SAMTools SNP 1215862 1215862 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D43%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C123:99 scaffold1301 SAMTools SNP 1219030 1219030 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C1%3BMQ%3D44%3BFQ%3D126%3BPV4%3D1%2C0.058%2C0.038%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C169:99 scaffold1301 SAMTools SNP 1219033 1219033 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C0%3BMQ%3D43%3BFQ%3D153%3BPV4%3D0.53%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C188:99 scaffold1301 SAMTools SNP 1219073 1219073 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C12%2C0%3BMQ%3D47%3BFQ%3D191%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C225:99 scaffold1301 SAMTools SNP 1224541 1224541 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1301 SAMTools SNP 1227467 1227467 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 1227471 1227471 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1301 SAMTools SNP 1231163 1231163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C13%2C21%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1231535 1231535 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C61%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.26%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1231543 1231543 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C59%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1240016 1240016 39.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1301 SAMTools SNP 1240387 1240387 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.5e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold1301 SAMTools SNP 1243393 1243393 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C234:99 scaffold1301 SAMTools SNP 1254288 1254288 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1301 SAMTools SNP 1255794 1255794 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold1301 SAMTools SNP 1263032 1263032 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1301 SAMTools SNP 1263045 1263045 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1301 SAMTools SNP 1267084 1267084 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D46%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1301 SAMTools SNP 1267085 1267085 158 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C8%2C1%3BMQ%3D46%3BFQ%3D161%3BPV4%3D0.05%2C0.14%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1301 SAMTools SNP 1268853 1268853 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.68%2C3.1e-13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1301 SAMTools SNP 1269133 1269133 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C255%2C0:99 scaffold1301 SAMTools SNP 1269626 1269626 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C48%2C0:93 scaffold1301 SAMTools SNP 1270108 1270108 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1301 SAMTools SNP 1270117 1270117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1301 SAMTools SNP 1270873 1270873 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1301 SAMTools SNP 1270885 1270885 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C244:99 scaffold1301 SAMTools SNP 1271386 1271386 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1271410 1271410 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1271687 1271687 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1271733 1271733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1272448 1272448 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1301 SAMTools SNP 1272454 1272454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1301 SAMTools SNP 1272481 1272481 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C206:99 scaffold1301 SAMTools SNP 1272619 1272619 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0039%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1301 SAMTools SNP 1273101 1273101 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1273146 1273146 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.027%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1301 SAMTools SNP 1273191 1273191 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1277706 1277706 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C43%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1301 SAMTools SNP 1288672 1288672 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1291106 1291106 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1295106 1295106 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1301 SAMTools SNP 1296672 1296672 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 1302781 1302781 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1301 SAMTools SNP 1302803 1302803 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1301 SAMTools SNP 1328443 1328443 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1301 SAMTools SNP 1328877 1328877 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1301 SAMTools SNP 1329841 1329841 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.039%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C228:99 scaffold1301 SAMTools SNP 1329862 1329862 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1301 SAMTools SNP 1331095 1331095 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1301 SAMTools SNP 1331125 1331125 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1301 SAMTools SNP 1331218 1331218 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1301 SAMTools SNP 1331723 1331723 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1301 SAMTools SNP 1331768 1331768 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1301 SAMTools SNP 1331807 1331807 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1301 SAMTools SNP 1331843 1331843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 1332292 1332292 78.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold1301 SAMTools SNP 1332728 1332728 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1333256 1333256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 1333265 1333265 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1301 SAMTools SNP 1334248 1334248 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1301 SAMTools SNP 1334329 1334329 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1301 SAMTools SNP 1334680 1334680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1301 SAMTools SNP 1336351 1336351 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 1341798 1341798 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1301 SAMTools SNP 1343175 1343175 14.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.067%2C4.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C5:8 scaffold1301 SAMTools SNP 1343842 1343842 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.28%2C2.5e-06%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1301 SAMTools SNP 1343905 1343905 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C2%2C54%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C6.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1343926 1343926 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C3%2C50%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1344167 1344167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C49%2C85%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1344203 1344203 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C59%2C44%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1344317 1344317 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1301 SAMTools SNP 1344338 1344338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1344528 1344528 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C13%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1301 SAMTools SNP 1344544 1344544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C15%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1301 SAMTools SNP 1344568 1344568 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.014%2C0.00052%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1301 SAMTools SNP 1344750 1344750 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C9%2C17%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.07%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1301 SAMTools SNP 1344813 1344813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1301 SAMTools SNP 1344816 1344816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1301 SAMTools SNP 1347135 1347135 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C6%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1301 SAMTools SNP 1347141 1347141 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1301 SAMTools SNP 1347169 1347169 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C14%2C18%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.12%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1301 SAMTools SNP 1347507 1347507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D593%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C12%2C263%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0037%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1347556 1347556 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D312%2C22%2C232%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1347658 1347658 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D521%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C272%2C5%2C64%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1301 SAMTools SNP 1349278 1349278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C70%2C15%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1349344 1349344 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C5%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1301 SAMTools SNP 1349488 1349488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1351058 1351058 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C121%2C33%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D3.7e-10%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1301 SAMTools SNP 1354443 1354443 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C58%2C11%2C9%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D3.4e-06%2C7e-50%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1301 SAMTools SNP 1375182 1375182 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1375222 1375222 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1301 SAMTools SNP 1375479 1375479 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1375677 1375677 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1301 SAMTools SNP 1378577 1378577 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1301 SAMTools SNP 1390270 1390270 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C57%3BMQ%3D49%3BFQ%3D98%3BPV4%3D1%2C0.001%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C125:99 scaffold1301 SAMTools SNP 1390312 1390312 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C10%3BMQ%3D49%3BFQ%3D138%3BPV4%3D1%2C0.078%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C237:99 scaffold1301 SAMTools SNP 1392254 1392254 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1301 SAMTools SNP 1392259 1392259 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1392260 1392260 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1392268 1392268 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1301 SAMTools SNP 1393180 1393180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C62%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1301 SAMTools SNP 1394591 1394591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C9%2C61%3BMQ%3D50%3BFQ%3D-144%3BPV4%3D0.26%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1301 SAMTools SNP 1394620 1394620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1301 SAMTools SNP 1394706 1394706 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C1%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.07%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1301 SAMTools SNP 1394714 1394714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C29%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1301 SAMTools SNP 1395695 1395695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C89%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1301 SAMTools SNP 1396302 1396302 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1301 SAMTools SNP 1396465 1396465 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1301 SAMTools SNP 1413429 1413429 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1301 SAMTools SNP 1413759 1413759 37.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1301 SAMTools SNP 1443631 1443631 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1301 SAMTools SNP 1444486 1444486 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 1444499 1444499 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1461785 1461785 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1301 SAMTools SNP 1461871 1461871 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.55%2C1e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C146:88 scaffold1301 SAMTools SNP 1463059 1463059 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1301 SAMTools SNP 1463324 1463324 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1301 SAMTools SNP 1474555 1474555 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 1475691 1475691 91.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold1301 SAMTools SNP 1484254 1484254 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C73:76 scaffold1301 SAMTools SNP 1484269 1484269 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1301 SAMTools SNP 1484685 1484685 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1301 SAMTools SNP 1484932 1484932 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold1301 SAMTools SNP 1485026 1485026 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C27%3BMQ%3D50%3BFQ%3D57.3%3BPV4%3D1%2C9.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C86:87 scaffold1301 SAMTools SNP 1485109 1485109 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold1301 SAMTools SNP 1485214 1485214 8.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1301 SAMTools SNP 1485350 1485350 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1301 SAMTools SNP 1485357 1485357 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1301 SAMTools SNP 1485358 1485358 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C4%2C0%3BMQ%3D49%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1301 SAMTools SNP 1485567 1485567 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1301 SAMTools SNP 1488058 1488058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C25%3BMQ%3D49%3BFQ%3D-94%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold1301 SAMTools SNP 1488096 1488096 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1301 SAMTools SNP 1492753 1492753 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C182:99 scaffold1301 SAMTools SNP 1492883 1492883 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0017%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C42:36 scaffold1301 SAMTools SNP 1493185 1493185 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.61%2C2.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1301 SAMTools SNP 1549231 1549231 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1301 SAMTools SNP 1549731 1549731 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1301 SAMTools SNP 1554173 1554173 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1301 SAMTools SNP 1555779 1555779 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1301 SAMTools SNP 1555780 1555780 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1301 SAMTools SNP 1555935 1555935 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.41%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1301 SAMTools SNP 1556171 1556171 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1304 SAMTools SNP 13015 13015 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1304 SAMTools SNP 18035 18035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1304 SAMTools SNP 18085 18085 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1304 SAMTools SNP 18431 18431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1304 SAMTools SNP 19689 19689 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1304 SAMTools SNP 19735 19735 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.047%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1304 SAMTools SNP 20024 20024 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1304 SAMTools SNP 20028 20028 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1304 SAMTools SNP 20037 20037 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1304 SAMTools SNP 20458 20458 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1304 SAMTools SNP 20668 20668 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1304 SAMTools SNP 21700 21700 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1304 SAMTools SNP 21701 21701 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1304 SAMTools SNP 21742 21742 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1304 SAMTools SNP 21784 21784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.00057%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1304 SAMTools SNP 22309 22309 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.23%2C7.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C164:70 scaffold1304 SAMTools SNP 26807 26807 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.64%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1304 SAMTools SNP 26822 26822 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C17%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.4%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1304 SAMTools SNP 26855 26855 29.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1304 SAMTools SNP 26939 26939 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C21%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C9.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C237:34 scaffold1304 SAMTools SNP 27677 27677 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.7e-07%2C5.5e-30%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1304 SAMTools SNP 27833 27833 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D5.4e-05%2C4.5e-14%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C157:48 scaffold1304 SAMTools SNP 28628 28628 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1304 SAMTools SNP 28992 28992 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1304 SAMTools SNP 29123 29123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1304 SAMTools SNP 30997 30997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1304 SAMTools SNP 31036 31036 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1304 SAMTools SNP 31079 31079 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1304 SAMTools SNP 31087 31087 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1304 SAMTools SNP 32139 32139 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1304 SAMTools SNP 32140 32140 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1304 SAMTools SNP 32825 32825 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.19%2C0.00016%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C186:99 scaffold1304 SAMTools SNP 32931 32931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1304 SAMTools SNP 33376 33376 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1304 SAMTools SNP 33396 33396 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C21%2C0:39 scaffold1304 SAMTools SNP 33447 33447 31.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1304 SAMTools SNP 33474 33474 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1304 SAMTools SNP 33477 33477 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1304 SAMTools SNP 33988 33988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1304 SAMTools SNP 35381 35381 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1304 SAMTools SNP 35481 35481 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1304 SAMTools SNP 37363 37363 22.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1304 SAMTools SNP 37561 37561 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C48%2C0:93 scaffold1304 SAMTools SNP 37649 37649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1304 SAMTools SNP 37699 37699 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.2%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C150:99 scaffold1304 SAMTools SNP 37952 37952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1304 SAMTools SNP 37992 37992 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C33%2C0:63 scaffold1304 SAMTools SNP 38091 38091 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C19%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C1%2C0:4 scaffold1304 SAMTools SNP 42147 42147 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1304 SAMTools SNP 42174 42174 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C231:99 scaffold1304 SAMTools SNP 42815 42815 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C12%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1304 SAMTools SNP 42824 42824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C34%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1304 SAMTools SNP 42834 42834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C214%2C0%2C205%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-07%2C0.01%2C1%2C5.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1304 SAMTools SNP 46840 46840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1304 SAMTools SNP 46861 46861 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1304 SAMTools SNP 47543 47543 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1304 SAMTools SNP 47603 47603 41.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1304 SAMTools SNP 47618 47618 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1304 SAMTools SNP 48566 48566 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1304 SAMTools SNP 52982 52982 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1304 SAMTools SNP 53481 53481 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1304 SAMTools SNP 53731 53731 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1304 SAMTools SNP 53746 53746 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1304 SAMTools SNP 53761 53761 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.45%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1304 SAMTools SNP 53814 53814 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1304 SAMTools SNP 54312 54312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C2%2C15%2C5%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C16:19 scaffold1304 SAMTools SNP 55059 55059 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1304 SAMTools SNP 55248 55248 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1304 SAMTools SNP 66866 66866 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold1304 SAMTools SNP 68856 68856 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C167:99 scaffold1304 SAMTools SNP 69328 69328 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1304 SAMTools SNP 69854 69854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1304 SAMTools SNP 69857 69857 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1304 SAMTools SNP 70041 70041 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1304 SAMTools SNP 70092 70092 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.35%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1304 SAMTools SNP 70099 70099 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1304 SAMTools SNP 70103 70103 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1304 SAMTools SNP 73035 73035 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C21%2C0:39 scaffold1304 SAMTools SNP 73119 73119 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1304 SAMTools SNP 73326 73326 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold1304 SAMTools SNP 73428 73428 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1304 SAMTools SNP 73559 73559 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1304 SAMTools SNP 73595 73595 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1304 SAMTools SNP 74699 74699 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1304 SAMTools SNP 75112 75112 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C30%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.27%2C4.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C134:99 scaffold1304 SAMTools SNP 75123 75123 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C81%2C0:99 scaffold1307 SAMTools SNP 170 170 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C34%3BMQ%3D3%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C135%2C0:90 scaffold1307 SAMTools SNP 2920 2920 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1307 SAMTools SNP 2930 2930 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.35%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C219:56 scaffold1307 SAMTools SNP 3108 3108 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C246:99 scaffold1307 SAMTools SNP 3512 3512 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C132%2C0%2C50%3BMQ%3D47%3BFQ%3D70%3BPV4%3D0.023%2C3.1e-15%2C0.31%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1307 SAMTools SNP 3520 3520 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C107%2C5%2C76%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 6589 6589 92.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1307 SAMTools SNP 6590 6590 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C109:74 scaffold1307 SAMTools SNP 7319 7319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C30%3BMQ%3D47%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1307 SAMTools SNP 7753 7753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C326%2C4%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1307 SAMTools SNP 24268 24268 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 24448 24448 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1307 SAMTools SNP 24833 24833 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1307 SAMTools SNP 54390 54390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1307 SAMTools SNP 54441 54441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1307 SAMTools SNP 54448 54448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1307 SAMTools SNP 57245 57245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1307 SAMTools SNP 57689 57689 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1307 SAMTools SNP 58593 58593 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1307 SAMTools SNP 58641 58641 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold1307 SAMTools SNP 60868 60868 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 60880 60880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1307 SAMTools SNP 61328 61328 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1307 SAMTools SNP 61957 61957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C10%2C16%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.12%2C0.47%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1307 SAMTools SNP 61990 61990 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1307 SAMTools SNP 61993 61993 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1307 SAMTools SNP 63210 63210 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1307 SAMTools SNP 63579 63579 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1307 SAMTools SNP 63597 63597 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1307 SAMTools SNP 69850 69850 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C78%3BMQ%3D3%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C250%2C0:99 scaffold1307 SAMTools SNP 73731 73731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1307 SAMTools SNP 79802 79802 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1307 SAMTools SNP 80944 80944 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C11%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.3e-07%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1307 SAMTools SNP 81546 81546 10.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1307 SAMTools SNP 82645 82645 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1307 SAMTools SNP 86833 86833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1307 SAMTools SNP 87132 87132 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1307 SAMTools SNP 88116 88116 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1307 SAMTools SNP 90178 90178 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1307 SAMTools SNP 90510 90510 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold1307 SAMTools SNP 92428 92428 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.021%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1307 SAMTools SNP 93690 93690 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.042%2C5.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1307 SAMTools SNP 93773 93773 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1307 SAMTools SNP 94405 94405 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1307 SAMTools SNP 94523 94523 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.26%2C0.0013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C191:99 scaffold1307 SAMTools SNP 94595 94595 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.54%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1307 SAMTools SNP 97939 97939 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1307 SAMTools SNP 97948 97948 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1307 SAMTools SNP 98182 98182 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.067%2C0.089%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1307 SAMTools SNP 98260 98260 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1307 SAMTools SNP 98705 98705 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1307 SAMTools SNP 98952 98952 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1307 SAMTools SNP 99686 99686 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C54%2C0:99 scaffold1307 SAMTools SNP 99796 99796 41.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1307 SAMTools SNP 99807 99807 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1307 SAMTools SNP 99880 99880 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C2.9e-21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C237:90 scaffold1307 SAMTools SNP 117645 117645 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 117665 117665 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 117725 117725 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold1307 SAMTools SNP 117826 117826 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C48%2C0:93 scaffold1307 SAMTools SNP 122473 122473 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1307 SAMTools SNP 127383 127383 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1307 SAMTools SNP 128857 128857 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1307 SAMTools SNP 128887 128887 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1307 SAMTools SNP 128893 128893 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1307 SAMTools SNP 130471 130471 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1307 SAMTools SNP 130473 130473 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1307 SAMTools SNP 130821 130821 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1307 SAMTools SNP 130848 130848 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C200:99 scaffold1307 SAMTools SNP 131273 131273 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1307 SAMTools SNP 131297 131297 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold1307 SAMTools SNP 135205 135205 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C202:99 scaffold1307 SAMTools SNP 135208 135208 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C212:87 scaffold1307 SAMTools SNP 135240 135240 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.073%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1307 SAMTools SNP 136754 136754 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C4%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.69%2C0.0031%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1307 SAMTools SNP 137390 137390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C27%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 138003 138003 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C36%2C32%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 138613 138613 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1307 SAMTools SNP 138661 138661 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.093%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 139225 139225 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1307 SAMTools SNP 139268 139268 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C226:37 scaffold1307 SAMTools SNP 139539 139539 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1307 SAMTools SNP 139557 139557 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1307 SAMTools SNP 140769 140769 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C36%2C0:67 scaffold1307 SAMTools SNP 140808 140808 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C235:52 scaffold1307 SAMTools SNP 140858 140858 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1307 SAMTools SNP 140859 140859 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.082%2C1%2C1%2C3.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1307 SAMTools SNP 140904 140904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C27%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 141176 141176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C78%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1307 SAMTools SNP 141848 141848 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1307 SAMTools SNP 141890 141890 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1307 SAMTools SNP 141911 141911 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C61%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1307 SAMTools SNP 142383 142383 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1307 SAMTools SNP 142400 142400 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 143640 143640 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1307 SAMTools SNP 143661 143661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1307 SAMTools SNP 143690 143690 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1307 SAMTools SNP 144976 144976 157 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C25%2C2%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0011%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1307 SAMTools SNP 144996 144996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C12%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1307 SAMTools SNP 144997 144997 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1307 SAMTools SNP 146253 146253 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1307 SAMTools SNP 146344 146344 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1307 SAMTools SNP 149856 149856 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1307 SAMTools SNP 150649 150649 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1307 SAMTools SNP 150786 150786 11.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold1307 SAMTools SNP 179705 179705 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1307 SAMTools SNP 225953 225953 30.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1307 SAMTools SNP 300984 300984 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1307 SAMTools SNP 343490 343490 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1307 SAMTools SNP 343567 343567 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C45%2C0:87 scaffold1307 SAMTools SNP 346930 346930 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 346969 346969 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 371906 371906 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 383320 383320 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 394557 394557 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1307 SAMTools SNP 400999 400999 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold1307 SAMTools SNP 404756 404756 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 405003 405003 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1307 SAMTools SNP 405365 405365 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1307 SAMTools SNP 406056 406056 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C12%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0019%2C1%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1307 SAMTools SNP 408480 408480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 408787 408787 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold1307 SAMTools SNP 409243 409243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C16%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.45%2C1%2C0.2%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 411653 411653 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1307 SAMTools SNP 411727 411727 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 412608 412608 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1307 SAMTools SNP 414340 414340 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0045%2C5.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1307 SAMTools SNP 415080 415080 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 415107 415107 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 415341 415341 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C3%2C9%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1307 SAMTools SNP 416527 416527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C20%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1307 SAMTools SNP 416605 416605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1307 SAMTools SNP 417404 417404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 417777 417777 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1307 SAMTools SNP 417810 417810 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1307 SAMTools SNP 417813 417813 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1307 SAMTools SNP 418296 418296 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C17%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1307 SAMTools SNP 418305 418305 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C27%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1307 SAMTools SNP 426263 426263 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1307 SAMTools SNP 426269 426269 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1307 SAMTools SNP 426320 426320 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1307 SAMTools SNP 426351 426351 24.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1307 SAMTools SNP 428731 428731 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D26%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold1307 SAMTools SNP 428746 428746 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C24%2C0:45 scaffold1307 SAMTools SNP 430954 430954 177 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D41%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C47%2C23%2C196%2C0%2C193:45 scaffold1307 SAMTools SNP 430963 430963 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C27%2C0:51 scaffold1307 SAMTools SNP 431257 431257 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 431272 431272 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 431927 431927 20.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D20%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold1307 SAMTools SNP 433494 433494 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C28%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.019%2C1%2C0.091%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 433530 433530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C36%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 433794 433794 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C2.8e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 433880 433880 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C5%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 434155 434155 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 434168 434168 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 434665 434665 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 439444 439444 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C22%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C251:99 scaffold1307 SAMTools SNP 439590 439590 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1307 SAMTools SNP 441566 441566 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D886%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C247%2C188%2C246%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1307 SAMTools SNP 442972 442972 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D691%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C152%2C96%2C385%3BMQ%3D35%3BFQ%3D225%3BPV4%3D0.53%2C1%2C3.2e-41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 443183 443183 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C63%2C17%2C117%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.44%2C0.02%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 443402 443402 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1307 SAMTools SNP 443446 443446 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C71%2C0%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-12%2C7.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 443649 443649 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C120%2C17%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1.4e-11%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1307 SAMTools SNP 444503 444503 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1307 SAMTools SNP 444845 444845 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C81%2C7%2C48%3BMQ%3D50%3BFQ%3D217%3BPV4%3D8.2e-10%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1307 SAMTools SNP 450770 450770 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1307 SAMTools SNP 451700 451700 71.3 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C151%2C178%2C0%2C166:27 scaffold1307 SAMTools SNP 452318 452318 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 452773 452773 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 452957 452957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 453137 453137 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 453209 453209 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.6%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1307 SAMTools SNP 454136 454136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 454403 454403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 454538 454538 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1307 SAMTools SNP 456686 456686 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1307 SAMTools SNP 459363 459363 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 459368 459368 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 459431 459431 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.015%2C2.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C150:69 scaffold1307 SAMTools SNP 459478 459478 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1307 SAMTools SNP 459933 459933 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.19%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1307 SAMTools SNP 460183 460183 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1307 SAMTools SNP 460303 460303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 461158 461158 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C7%2C13%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0071%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 461511 461511 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C1%2C10%3BMQ%3D48%3BFQ%3D210%3BPV4%3D0.35%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C240:99 scaffold1307 SAMTools SNP 461520 461520 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1307 SAMTools SNP 461535 461535 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C6%3BMQ%3D46%3BFQ%3D109%3BPV4%3D1%2C0.093%2C0.47%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1307 SAMTools SNP 463686 463686 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1307 SAMTools SNP 463719 463719 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1307 SAMTools SNP 464065 464065 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1307 SAMTools SNP 464106 464106 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1307 SAMTools SNP 466913 466913 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1307 SAMTools SNP 466973 466973 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.33%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1307 SAMTools SNP 467677 467677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C33%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold1307 SAMTools SNP 469313 469313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 469357 469357 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1307 SAMTools SNP 470976 470976 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.43%2C0.096%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C227:99 scaffold1307 SAMTools SNP 471005 471005 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1307 SAMTools SNP 471027 471027 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0052%2C0.36%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1307 SAMTools SNP 471536 471536 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1307 SAMTools SNP 471538 471538 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1307 SAMTools SNP 473716 473716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1307 SAMTools SNP 473726 473726 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.28%2C0.49%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1307 SAMTools SNP 474137 474137 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 474173 474173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 474652 474652 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.4%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1307 SAMTools SNP 475182 475182 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.37%2C0.00013%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1307 SAMTools SNP 475813 475813 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.28%2C1%2C6.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1307 SAMTools SNP 478429 478429 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1307 SAMTools SNP 498628 498628 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D41%3BFQ%3D9.53%3BPV4%3D1%2C0.015%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C144:37 scaffold1307 SAMTools SNP 499362 499362 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.048%2C2.7e-09%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1307 SAMTools SNP 499786 499786 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1307 SAMTools SNP 516043 516043 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1307 SAMTools SNP 516357 516357 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1307 SAMTools SNP 516369 516369 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1307 SAMTools SNP 516375 516375 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1307 SAMTools SNP 516576 516576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1307 SAMTools SNP 516636 516636 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold1307 SAMTools SNP 516825 516825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1307 SAMTools SNP 516870 516870 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 516879 516879 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 517105 517105 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C26%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D4.7e-08%2C0.19%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1307 SAMTools SNP 517106 517106 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1307 SAMTools SNP 517290 517290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1307 SAMTools SNP 517348 517348 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold1307 SAMTools SNP 517548 517548 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D191%3BPV4%3D5.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1307 SAMTools SNP 517884 517884 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1307 SAMTools SNP 517967 517967 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 518121 518121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 518145 518145 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1307 SAMTools SNP 518352 518352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C17%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1307 SAMTools SNP 518411 518411 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C217:99 scaffold1307 SAMTools SNP 518412 518412 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C196:99 scaffold1307 SAMTools SNP 518418 518418 204 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C18%2C0:33 scaffold1307 SAMTools SNP 518445 518445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1307 SAMTools SNP 518451 518451 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.39%2C0.18%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1307 SAMTools SNP 519370 519370 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1307 SAMTools SNP 519388 519388 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1307 SAMTools SNP 519448 519448 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1307 SAMTools SNP 519991 519991 23.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold1307 SAMTools SNP 520045 520045 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C1%3BMQ%3D45%3BFQ%3D14.2%3BPV4%3D1%2C1%2C0.28%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1307 SAMTools SNP 520398 520398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C13%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1307 SAMTools SNP 520624 520624 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C60%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1307 SAMTools SNP 520694 520694 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.58%2C2.5e-05%2C0.0094%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1307 SAMTools SNP 520848 520848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1307 SAMTools SNP 520893 520893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1307 SAMTools SNP 525698 525698 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 526243 526243 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1307 SAMTools SNP 529363 529363 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.28%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1307 SAMTools SNP 529414 529414 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1307 SAMTools SNP 529447 529447 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.14%2C0.0013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1307 SAMTools SNP 530514 530514 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C7%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.029%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 530723 530723 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C7%3BMQ%3D47%3BFQ%3D33%3BPV4%3D0.52%2C0.00069%2C0.022%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1307 SAMTools SNP 531049 531049 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1307 SAMTools SNP 531085 531085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C32%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1307 SAMTools SNP 531736 531736 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1307 SAMTools SNP 531739 531739 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1307 SAMTools SNP 532110 532110 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1307 SAMTools SNP 533817 533817 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1307 SAMTools SNP 533846 533846 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C0%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1307 SAMTools SNP 534113 534113 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1307 SAMTools SNP 534184 534184 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1307 SAMTools SNP 534367 534367 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1307 SAMTools SNP 534619 534619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1307 SAMTools SNP 534647 534647 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1307 SAMTools SNP 541650 541650 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C219:99 scaffold1307 SAMTools SNP 552524 552524 5.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1307 SAMTools SNP 552826 552826 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold1307 SAMTools SNP 554297 554297 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1307 SAMTools SNP 556011 556011 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1307 SAMTools SNP 556032 556032 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1307 SAMTools SNP 556074 556074 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1307 SAMTools SNP 556605 556605 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold1307 SAMTools SNP 556609 556609 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C179:31 scaffold1307 SAMTools SNP 556681 556681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1307 SAMTools SNP 562580 562580 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1307 SAMTools SNP 563920 563920 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1307 SAMTools SNP 563968 563968 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1307 SAMTools SNP 565484 565484 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 565494 565494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 567026 567026 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C38:41 scaffold1307 SAMTools SNP 567151 567151 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1307 SAMTools SNP 567155 567155 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1307 SAMTools SNP 612987 612987 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1307 SAMTools SNP 613459 613459 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C196:31 scaffold1307 SAMTools SNP 615809 615809 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.3%2C0.48%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1307 SAMTools SNP 615863 615863 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1307 SAMTools SNP 625401 625401 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.027%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C88:34 scaffold1307 SAMTools SNP 625589 625589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C45%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1307 SAMTools SNP 626151 626151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 626538 626538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1307 SAMTools SNP 628201 628201 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C0.39%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 629089 629089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1307 SAMTools SNP 630105 630105 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1307 SAMTools SNP 630112 630112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C5%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 630166 630166 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1307 SAMTools SNP 630729 630729 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 631018 631018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 631069 631069 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.23%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 633664 633664 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1307 SAMTools SNP 633691 633691 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C225:99 scaffold1307 SAMTools SNP 633823 633823 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C224:99 scaffold1307 SAMTools SNP 633937 633937 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.085%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1307 SAMTools SNP 633946 633946 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1307 SAMTools SNP 635105 635105 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 636259 636259 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1307 SAMTools SNP 636307 636307 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.25%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1307 SAMTools SNP 636391 636391 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C18%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.018%2C1%2C1%2C4.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1307 SAMTools SNP 636427 636427 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C12%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1307 SAMTools SNP 646786 646786 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1307 SAMTools SNP 650317 650317 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1307 SAMTools SNP 651900 651900 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1307 SAMTools SNP 652579 652579 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 661021 661021 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C12%2C7%2C0%3BMQ%3D30%3BFQ%3D-34%3BPV4%3D2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C7%2C0:12 scaffold1307 SAMTools SNP 661377 661377 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1307 SAMTools SNP 666928 666928 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1307 SAMTools SNP 667363 667363 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1307 SAMTools SNP 667774 667774 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C152:52 scaffold1307 SAMTools SNP 667804 667804 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C88:69 scaffold1307 SAMTools SNP 667814 667814 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1307 SAMTools SNP 668369 668369 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1307 SAMTools SNP 668394 668394 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1307 SAMTools SNP 668579 668579 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1307 SAMTools SNP 668968 668968 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1307 SAMTools SNP 668975 668975 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C27:30 scaffold1307 SAMTools SNP 671324 671324 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.081%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C124:69 scaffold1307 SAMTools SNP 671336 671336 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.29%2C7.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C160:88 scaffold1307 SAMTools SNP 671633 671633 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D33.8%3BPV4%3D1%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C61:64 scaffold1307 SAMTools SNP 671835 671835 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.57%2C9.8e-13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C212:89 scaffold1307 SAMTools SNP 671903 671903 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C172:99 scaffold1307 SAMTools SNP 680485 680485 17.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D21%3BFQ%3D-37%3BPV4%3D0.17%2C0.38%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C10%2C0:17 scaffold1307 SAMTools SNP 681346 681346 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1307 SAMTools SNP 681454 681454 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1307 SAMTools SNP 685242 685242 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1307 SAMTools SNP 685266 685266 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1307 SAMTools SNP 686226 686226 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 686351 686351 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1307 SAMTools SNP 686376 686376 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1307 SAMTools SNP 686383 686383 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1307 SAMTools SNP 686599 686599 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1307 SAMTools SNP 707921 707921 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1307 SAMTools SNP 714815 714815 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 723546 723546 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1307 SAMTools SNP 723551 723551 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.056%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C112:74 scaffold1307 SAMTools SNP 723563 723563 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1307 SAMTools SNP 723603 723603 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1307 SAMTools SNP 724010 724010 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1307 SAMTools SNP 724043 724043 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1307 SAMTools SNP 725723 725723 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C25%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.089%2C8.7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1307 SAMTools SNP 727263 727263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C41%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold1307 SAMTools SNP 728260 728260 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1307 SAMTools SNP 729049 729049 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C212%2C45%2C161%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 729099 729099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C148%2C19%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 730950 730950 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C207%2C1%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 738293 738293 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1307 SAMTools SNP 739028 739028 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1307 SAMTools SNP 739854 739854 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.041%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1307 SAMTools SNP 739892 739892 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.00064%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 740783 740783 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1307 SAMTools SNP 741951 741951 140 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C138%2C0:99 scaffold1307 SAMTools SNP 742408 742408 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00064%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C191:44 scaffold1307 SAMTools SNP 753112 753112 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1307 SAMTools SNP 759064 759064 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 759362 759362 67.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold1307 SAMTools SNP 760086 760086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1307 SAMTools SNP 760804 760804 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1307 SAMTools SNP 760835 760835 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1307 SAMTools SNP 761783 761783 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1307 SAMTools SNP 770544 770544 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1307 SAMTools SNP 772568 772568 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1307 SAMTools SNP 786275 786275 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1308 SAMTools SNP 12617 12617 26.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1308 SAMTools SNP 21439 21439 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1308 SAMTools SNP 56940 56940 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1308 SAMTools SNP 57874 57874 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C217:99 scaffold1308 SAMTools SNP 58316 58316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1308 SAMTools SNP 58332 58332 218 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C42%2C0%2C228%2C7%2C225:81 scaffold1308 SAMTools SNP 68757 68757 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.052%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold1308 SAMTools SNP 69463 69463 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1308 SAMTools SNP 69596 69596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1308 SAMTools SNP 70119 70119 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1308 SAMTools SNP 70775 70775 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold1308 SAMTools SNP 71102 71102 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold1308 SAMTools SNP 71380 71380 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1309 SAMTools SNP 812 812 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.29%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1309 SAMTools SNP 1225 1225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C26%2C90%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C0.0011%2C1%2C6.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 1237 1237 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C54%2C3%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-09%2C0.25%2C1%2C3.5e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 1249 1249 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C113%2C1%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-15%2C0.032%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 2996 2996 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C128%2C0%2C78%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.53%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1309 SAMTools SNP 3074 3074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C26%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1309 SAMTools SNP 3083 3083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1309 SAMTools SNP 7038 7038 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1309 SAMTools SNP 7040 7040 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1309 SAMTools SNP 7077 7077 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1309 SAMTools SNP 9046 9046 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1309 SAMTools SNP 9051 9051 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C234:99 scaffold1309 SAMTools SNP 9109 9109 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold1309 SAMTools SNP 9117 9117 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0:45 scaffold1309 SAMTools SNP 9310 9310 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C18%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.062%2C5.6e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1309 SAMTools SNP 9875 9875 14.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold1309 SAMTools SNP 10078 10078 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 14352 14352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 14373 14373 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C11%2C36%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 14664 14664 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C7%2C32%2C19%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0034%2C6.1e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1309 SAMTools SNP 15505 15505 6.95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1309 SAMTools SNP 16862 16862 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C180%2C1%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C255%2C0:99 scaffold1309 SAMTools SNP 16961 16961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C67%2C38%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C8.7e-06%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 18654 18654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C85%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 18700 18700 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C50%2C9%2C6%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1309 SAMTools SNP 18705 18705 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C52%2C9%2C6%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1309 SAMTools SNP 22529 22529 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C33%2C0%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C0.018%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1309 SAMTools SNP 22637 22637 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C86%2C103%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 22646 22646 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C221%2C1%2C178%3BMQ%3D50%3BFQ%3D214%3BPV4%3D7.5e-18%2C4.3e-16%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1309 SAMTools SNP 22664 22664 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D677%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C365%2C0%2C236%3BMQ%3D50%3BFQ%3D186%3BPV4%3D3.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1309 SAMTools SNP 23080 23080 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 23138 23138 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.026%2C9.2e-100%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C254:46 scaffold1309 SAMTools SNP 23272 23272 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C123%2C0:99 scaffold1309 SAMTools SNP 25024 25024 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1309 SAMTools SNP 26665 26665 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 26837 26837 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1309 SAMTools SNP 26894 26894 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1309 SAMTools SNP 27420 27420 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1309 SAMTools SNP 27639 27639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C47%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 28077 28077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C53%2C5%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 28151 28151 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C218:99 scaffold1309 SAMTools SNP 28154 28154 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1309 SAMTools SNP 28459 28459 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1309 SAMTools SNP 28461 28461 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 28494 28494 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 28921 28921 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1309 SAMTools SNP 29203 29203 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1309 SAMTools SNP 29523 29523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1309 SAMTools SNP 29541 29541 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.18%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold1309 SAMTools SNP 29575 29575 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1309 SAMTools SNP 29847 29847 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C244:99 scaffold1309 SAMTools SNP 30255 30255 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 32063 32063 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C52%2C2%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.077%2C0.056%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1309 SAMTools SNP 33254 33254 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C166:99 scaffold1309 SAMTools SNP 33288 33288 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C215:99 scaffold1309 SAMTools SNP 33514 33514 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.011%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1309 SAMTools SNP 34014 34014 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 34077 34077 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0079%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C156:69 scaffold1309 SAMTools SNP 34806 34806 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1309 SAMTools SNP 34814 34814 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.26%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1309 SAMTools SNP 34915 34915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1309 SAMTools SNP 35210 35210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1309 SAMTools SNP 35249 35249 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C12%2C24%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold1309 SAMTools SNP 41556 41556 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 41561 41561 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 43754 43754 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1309 SAMTools SNP 43972 43972 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1309 SAMTools SNP 45568 45568 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1309 SAMTools SNP 45680 45680 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1309 SAMTools SNP 45721 45721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1309 SAMTools SNP 46277 46277 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C215:71 scaffold1309 SAMTools SNP 54849 54849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C356%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 54852 54852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C359%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 55844 55844 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.051%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 56072 56072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1309 SAMTools SNP 56156 56156 4.11 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1309 SAMTools SNP 56773 56773 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 56812 56812 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1309 SAMTools SNP 59505 59505 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D661%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C247%2C82%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-06%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 59517 59517 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D662%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C265%2C44%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 60007 60007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C86%2C8%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 60498 60498 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C177:53 scaffold1309 SAMTools SNP 62425 62425 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C101%2C23%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C4.2e-23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 66980 66980 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C0:75 scaffold1309 SAMTools SNP 69637 69637 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1309 SAMTools SNP 69861 69861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 69867 69867 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.057%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 69887 69887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1309 SAMTools SNP 70520 70520 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1309 SAMTools SNP 70592 70592 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1309 SAMTools SNP 70911 70911 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1309 SAMTools SNP 71236 71236 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1309 SAMTools SNP 71513 71513 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1309 SAMTools SNP 73870 73870 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 74078 74078 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1309 SAMTools SNP 76149 76149 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1309 SAMTools SNP 77033 77033 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1309 SAMTools SNP 77039 77039 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1309 SAMTools SNP 77059 77059 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1309 SAMTools SNP 77072 77072 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1309 SAMTools SNP 77328 77328 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1309 SAMTools SNP 77334 77334 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 78061 78061 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C210:70 scaffold1309 SAMTools SNP 78088 78088 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1309 SAMTools SNP 78360 78360 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C234:92 scaffold1309 SAMTools SNP 78969 78969 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1309 SAMTools SNP 79175 79175 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1309 SAMTools SNP 79179 79179 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1309 SAMTools SNP 79401 79401 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C6%2C10%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.24%2C0.002%2C0.37%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 79514 79514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1309 SAMTools SNP 79596 79596 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1309 SAMTools SNP 79815 79815 31.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold1309 SAMTools SNP 79962 79962 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C84%2C0:99 scaffold1309 SAMTools SNP 80136 80136 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.58%2C7.3e-08%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1309 SAMTools SNP 80615 80615 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1.7e-06%2C1%2C1%2C6.7e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C221:80 scaffold1309 SAMTools SNP 80958 80958 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1309 SAMTools SNP 81388 81388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C57%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold1309 SAMTools SNP 81540 81540 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C99%2C0:99 scaffold1309 SAMTools SNP 81753 81753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1309 SAMTools SNP 81802 81802 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 81850 81850 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1309 SAMTools SNP 82050 82050 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1309 SAMTools SNP 82052 82052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1309 SAMTools SNP 82170 82170 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1309 SAMTools SNP 82194 82194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1309 SAMTools SNP 82364 82364 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C9%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1309 SAMTools SNP 82922 82922 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 82940 82940 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C69%2C0:99 scaffold1309 SAMTools SNP 83041 83041 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1309 SAMTools SNP 83042 83042 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1309 SAMTools SNP 83639 83639 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1309 SAMTools SNP 83961 83961 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1309 SAMTools SNP 84187 84187 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1309 SAMTools SNP 84211 84211 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1309 SAMTools SNP 84247 84247 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.084%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1309 SAMTools SNP 84321 84321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 84371 84371 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C75%2C0:99 scaffold1309 SAMTools SNP 84392 84392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1309 SAMTools SNP 84657 84657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 84875 84875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 85443 85443 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C3%2C21%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.5%2C5.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1309 SAMTools SNP 86175 86175 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold1309 SAMTools SNP 86190 86190 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold1309 SAMTools SNP 86672 86672 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1309 SAMTools SNP 87333 87333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 87338 87338 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 87407 87407 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C226:99 scaffold1309 SAMTools SNP 87751 87751 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1309 SAMTools SNP 87766 87766 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1309 SAMTools SNP 87874 87874 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C63:66 scaffold1309 SAMTools SNP 87886 87886 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold1309 SAMTools SNP 88066 88066 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 88069 88069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 89407 89407 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1309 SAMTools SNP 91470 91470 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 91697 91697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1309 SAMTools SNP 91719 91719 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.01%2C0.085%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1309 SAMTools SNP 91733 91733 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1309 SAMTools SNP 91951 91951 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1309 SAMTools SNP 92078 92078 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1309 SAMTools SNP 92099 92099 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1309 SAMTools SNP 92144 92144 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1309 SAMTools SNP 92413 92413 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 92946 92946 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1309 SAMTools SNP 93523 93523 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1309 SAMTools SNP 93538 93538 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C24%2C0:45 scaffold1309 SAMTools SNP 93547 93547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1309 SAMTools SNP 95582 95582 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1309 SAMTools SNP 95606 95606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1309 SAMTools SNP 96003 96003 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 96020 96020 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 97853 97853 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C230:66 scaffold1309 SAMTools SNP 103910 103910 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold1309 SAMTools SNP 104135 104135 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1309 SAMTools SNP 104461 104461 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 104641 104641 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1309 SAMTools SNP 104647 104647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1309 SAMTools SNP 107877 107877 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 108258 108258 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1309 SAMTools SNP 108672 108672 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.37%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1309 SAMTools SNP 110078 110078 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 110081 110081 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1309 SAMTools SNP 110132 110132 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1309 SAMTools SNP 110460 110460 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1309 SAMTools SNP 110472 110472 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1309 SAMTools SNP 110507 110507 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1309 SAMTools SNP 110754 110754 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.14%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1309 SAMTools SNP 111473 111473 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1309 SAMTools SNP 111482 111482 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold1309 SAMTools SNP 111914 111914 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1309 SAMTools SNP 115834 115834 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C234:41 scaffold1309 SAMTools SNP 115973 115973 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C0%2C40%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.065%2C1.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1309 SAMTools SNP 141992 141992 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1309 SAMTools SNP 147764 147764 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D565%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C219%2C5%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 147780 147780 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 149700 149700 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C50%2C26%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 150362 150362 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C57%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 151022 151022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C6%2C47%3BMQ%3D46%3BFQ%3D206%3BPV4%3D0.67%2C1%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1309 SAMTools SNP 151064 151064 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C84%2C10%2C18%3BMQ%3D47%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1309 SAMTools SNP 151082 151082 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C77%2C81%2C15%3BMQ%3D48%3BFQ%3D225%3BPV4%3D5.8e-07%2C1%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 151275 151275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C10%2C95%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 151516 151516 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C124%2C1%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 154154 154154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 154187 154187 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C135%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1309 SAMTools SNP 155193 155193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1309 SAMTools SNP 155688 155688 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1309 SAMTools SNP 156756 156756 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C149%2C7%2C16%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1309 SAMTools SNP 157844 157844 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C108%2C0%2C35%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C8.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C244:92 scaffold1309 SAMTools SNP 158833 158833 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C13%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1309 SAMTools SNP 160031 160031 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1309 SAMTools SNP 160120 160120 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1309 SAMTools SNP 160128 160128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1309 SAMTools SNP 161384 161384 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1309 SAMTools SNP 162027 162027 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1309 SAMTools SNP 163946 163946 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1309 SAMTools SNP 164016 164016 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C39%2C0:75 scaffold1309 SAMTools SNP 164180 164180 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1309 SAMTools SNP 164326 164326 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1309 SAMTools SNP 164546 164546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.0031%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 165345 165345 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C27%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.037%2C4.2e-21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1309 SAMTools SNP 181635 181635 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1309 SAMTools SNP 199159 199159 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C0.019%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1309 SAMTools SNP 201617 201617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1309 SAMTools SNP 202105 202105 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1309 SAMTools SNP 202670 202670 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.066%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C203:34 scaffold1309 SAMTools SNP 202749 202749 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1309 SAMTools SNP 203284 203284 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C15%2C0:27 scaffold1309 SAMTools SNP 204132 204132 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1309 SAMTools SNP 204425 204425 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.007%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C193:42 scaffold1309 SAMTools SNP 204482 204482 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C220:99 scaffold1309 SAMTools SNP 205181 205181 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1309 SAMTools SNP 205491 205491 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C182:31 scaffold1309 SAMTools SNP 209793 209793 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1309 SAMTools SNP 219484 219484 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1309 SAMTools SNP 219523 219523 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1309 SAMTools SNP 222138 222138 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1309 SAMTools SNP 222180 222180 12 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1309 SAMTools SNP 254932 254932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1309 SAMTools SNP 261414 261414 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.024%2C0.097%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C139:99 scaffold1309 SAMTools SNP 261637 261637 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C195:99 scaffold1309 SAMTools SNP 263021 263021 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1309 SAMTools SNP 264993 264993 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1309 SAMTools SNP 266034 266034 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1309 SAMTools SNP 273605 273605 38.8 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C17%2C0%3BMQ%3D16%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C10%2C0%2C87%2C7%2C69:17 scaffold1309 SAMTools SNP 294829 294829 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C129%2C0:99 scaffold1314 SAMTools SNP 105506 105506 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.72%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1314 SAMTools SNP 106752 106752 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1314 SAMTools SNP 107106 107106 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1314 SAMTools SNP 107223 107223 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1314 SAMTools SNP 109313 109313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1314 SAMTools SNP 114103 114103 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1314 SAMTools SNP 134917 134917 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1314 SAMTools SNP 180042 180042 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1314 SAMTools SNP 180094 180094 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1314 SAMTools SNP 183418 183418 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1314 SAMTools SNP 183420 183420 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1314 SAMTools SNP 183577 183577 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1314 SAMTools SNP 191724 191724 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1058%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D630%2C7%2C418%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 192327 192327 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D623%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D291%2C109%2C170%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.31%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 192643 192643 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D958%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C549%2C8%2C365%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.42%2C1%2C6.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 192664 192664 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0142%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C37%2C1%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.38%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1314 SAMTools SNP 193129 193129 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.23%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C237:94 scaffold1314 SAMTools SNP 193380 193380 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1314 SAMTools SNP 193381 193381 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1314 SAMTools SNP 193390 193390 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1314 SAMTools SNP 194714 194714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1314 SAMTools SNP 195044 195044 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C0%2C73%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 195077 195077 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C0%2C91%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0035%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 195092 195092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C0%2C73%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 195101 195101 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C2%2C72%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 196471 196471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C34%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 196855 196855 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C19%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 196930 196930 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C21%2C2%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0004%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1314 SAMTools SNP 196936 196936 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C14%2C72%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 197814 197814 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D847%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D500%2C16%2C316%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.0033%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1314 SAMTools SNP 198206 198206 7.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1314 SAMTools SNP 198389 198389 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C63%2C0:99 scaffold1314 SAMTools SNP 198414 198414 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C75%2C0:99 scaffold1314 SAMTools SNP 198730 198730 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1.5e-05%2C9.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1314 SAMTools SNP 198851 198851 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C71%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C214%2C0:99 scaffold1315 SAMTools SNP 13519 13519 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1315 SAMTools SNP 83161 83161 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1315 SAMTools SNP 83168 83168 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 84305 84305 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1315 SAMTools SNP 84339 84339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1315 SAMTools SNP 86109 86109 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 86188 86188 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1315 SAMTools SNP 86786 86786 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1315 SAMTools SNP 86818 86818 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1315 SAMTools SNP 86842 86842 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1315 SAMTools SNP 86854 86854 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C200:99 scaffold1315 SAMTools SNP 86875 86875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1315 SAMTools SNP 87113 87113 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C146:99 scaffold1315 SAMTools SNP 87163 87163 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1315 SAMTools SNP 87520 87520 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1315 SAMTools SNP 87625 87625 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C60:63 scaffold1315 SAMTools SNP 88438 88438 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1315 SAMTools SNP 88517 88517 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C173:99 scaffold1315 SAMTools SNP 88544 88544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1315 SAMTools SNP 88744 88744 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1315 SAMTools SNP 88793 88793 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold1315 SAMTools SNP 88832 88832 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1315 SAMTools SNP 89167 89167 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 89377 89377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1315 SAMTools SNP 89395 89395 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1315 SAMTools SNP 89406 89406 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1315 SAMTools SNP 89804 89804 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1315 SAMTools SNP 89824 89824 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1315 SAMTools SNP 89859 89859 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1315 SAMTools SNP 90605 90605 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1315 SAMTools SNP 90634 90634 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1315 SAMTools SNP 91274 91274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1315 SAMTools SNP 94732 94732 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1315 SAMTools SNP 95229 95229 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0093%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1315 SAMTools SNP 95273 95273 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1315 SAMTools SNP 95359 95359 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1315 SAMTools SNP 106240 106240 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 106652 106652 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1315 SAMTools SNP 112804 112804 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C132:41 scaffold1315 SAMTools SNP 120332 120332 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D22.8%3BPV4%3D0.00056%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C62:53 scaffold1315 SAMTools SNP 120387 120387 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C20%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.9e-08%2C1%2C2e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C62:65 scaffold1315 SAMTools SNP 120548 120548 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.002%2C6.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C201:36 scaffold1315 SAMTools SNP 120570 120570 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C48%2C0:93 scaffold1315 SAMTools SNP 120595 120595 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C6.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C244:72 scaffold1315 SAMTools SNP 120812 120812 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C52%2C16%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 121121 121121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C12%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 121151 121151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00084%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 122796 122796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1315 SAMTools SNP 122829 122829 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1315 SAMTools SNP 122838 122838 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C104:99 scaffold1315 SAMTools SNP 123229 123229 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C1%2C12%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.66%2C0.033%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1315 SAMTools SNP 123901 123901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C118%2C18%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 123922 123922 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C20%2C58%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 123955 123955 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C28%2C53%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 125300 125300 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 127067 127067 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.57%2C0.33%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1315 SAMTools SNP 127532 127532 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1315 SAMTools SNP 130625 130625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 130664 130664 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C32%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1315 SAMTools SNP 131286 131286 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.12%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1315 SAMTools SNP 131765 131765 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C2%2C76%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 131777 131777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C2%2C68%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 131981 131981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C51%2C15%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.094%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 132272 132272 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C20%2C75%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C6.1e-07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 133057 133057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C8%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 133377 133377 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C33%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 134617 134617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1315 SAMTools SNP 134643 134643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1315 SAMTools SNP 140897 140897 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1315 SAMTools SNP 144376 144376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C21%2C0%2C383%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 144932 144932 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C249:99 scaffold1315 SAMTools SNP 144954 144954 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C4.6e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C157:99 scaffold1315 SAMTools SNP 145647 145647 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1315 SAMTools SNP 146591 146591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1315 SAMTools SNP 146614 146614 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold1315 SAMTools SNP 146648 146648 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C15%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D4.6e-07%2C0.41%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1315 SAMTools SNP 147282 147282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 147777 147777 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1315 SAMTools SNP 148662 148662 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1315 SAMTools SNP 149067 149067 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.67%2C0.048%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1315 SAMTools SNP 149112 149112 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.13%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1315 SAMTools SNP 149421 149421 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1315 SAMTools SNP 149532 149532 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C7%2C12%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.76%2C2.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1315 SAMTools SNP 152154 152154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1315 SAMTools SNP 152320 152320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 154168 154168 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C31%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 158560 158560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 158572 158572 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C216:99 scaffold1315 SAMTools SNP 158581 158581 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 158584 158584 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1315 SAMTools SNP 158605 158605 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1315 SAMTools SNP 160320 160320 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 160706 160706 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.12%2C0.00088%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1315 SAMTools SNP 162670 162670 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1315 SAMTools SNP 162682 162682 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1315 SAMTools SNP 164985 164985 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 166974 166974 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 173206 173206 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0021%2C4.7e-07%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1315 SAMTools SNP 173333 173333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 174044 174044 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C76%2C7%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0042%2C0.0038%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1315 SAMTools SNP 174661 174661 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 180398 180398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1315 SAMTools SNP 180494 180494 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C4%2C89%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-127%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 180569 180569 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C39%2C0%2C22%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.00094%2C1.8e-06%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1315 SAMTools SNP 180581 180581 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C91%2C1%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 180919 180919 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.44%2C0.21%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C227:99 scaffold1315 SAMTools SNP 180958 180958 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 181000 181000 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1315 SAMTools SNP 181224 181224 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1315 SAMTools SNP 181236 181236 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C6.1e-11%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C175:41 scaffold1315 SAMTools SNP 181435 181435 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1315 SAMTools SNP 181746 181746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 181752 181752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 182613 182613 15.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1315 SAMTools SNP 183418 183418 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D1%2C0.021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold1315 SAMTools SNP 191656 191656 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C226:99 scaffold1315 SAMTools SNP 196440 196440 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 201215 201215 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold1315 SAMTools SNP 202217 202217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1315 SAMTools SNP 202349 202349 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C189:63 scaffold1315 SAMTools SNP 223866 223866 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 224392 224392 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C39%2C0:75 scaffold1315 SAMTools SNP 225043 225043 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.16%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C127:74 scaffold1315 SAMTools SNP 225261 225261 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1315 SAMTools SNP 251258 251258 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 261191 261191 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1315 SAMTools SNP 261886 261886 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1315 SAMTools SNP 263944 263944 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1315 SAMTools SNP 267992 267992 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.077%2C1.9e-05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1315 SAMTools SNP 268279 268279 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1315 SAMTools SNP 270962 270962 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1315 SAMTools SNP 296564 296564 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1315 SAMTools SNP 303193 303193 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C27%2C0:51 scaffold1315 SAMTools SNP 303294 303294 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C32%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.6%2C9.6e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1315 SAMTools SNP 303688 303688 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 303787 303787 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 303812 303812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1315 SAMTools SNP 304277 304277 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C73%2C0%2C11%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.35%2C1%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1315 SAMTools SNP 306326 306326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1315 SAMTools SNP 306350 306350 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C18%2C25%2C25%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.049%2C2.2e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1315 SAMTools SNP 309490 309490 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C13%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 310757 310757 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1315 SAMTools SNP 311213 311213 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1315 SAMTools SNP 312280 312280 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 312289 312289 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1315 SAMTools SNP 313485 313485 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 314372 314372 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1315 SAMTools SNP 314375 314375 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1315 SAMTools SNP 314420 314420 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1315 SAMTools SNP 321653 321653 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 323932 323932 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1315 SAMTools SNP 323963 323963 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1315 SAMTools SNP 327596 327596 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 348579 348579 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1315 SAMTools SNP 348760 348760 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.29%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1315 SAMTools SNP 350329 350329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1315 SAMTools SNP 353222 353222 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 353790 353790 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 353863 353863 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C3%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.27%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1315 SAMTools SNP 355115 355115 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1315 SAMTools SNP 355118 355118 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C5%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1315 SAMTools SNP 364654 364654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1315 SAMTools SNP 364693 364693 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 365071 365071 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1315 SAMTools SNP 365140 365140 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 365686 365686 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 366114 366114 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold1315 SAMTools SNP 369397 369397 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1315 SAMTools SNP 370056 370056 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.099%2C0.00013%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1315 SAMTools SNP 370062 370062 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.58%2C0.00026%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1315 SAMTools SNP 370318 370318 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C6%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.13%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1315 SAMTools SNP 370368 370368 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1315 SAMTools SNP 370387 370387 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1315 SAMTools SNP 370450 370450 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C6%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.7%2C6.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1315 SAMTools SNP 371190 371190 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1315 SAMTools SNP 371685 371685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1315 SAMTools SNP 371742 371742 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1315 SAMTools SNP 371818 371818 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold1315 SAMTools SNP 372279 372279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1315 SAMTools SNP 372340 372340 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 373555 373555 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C24%2C0:45 scaffold1315 SAMTools SNP 376023 376023 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.002%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1315 SAMTools SNP 376059 376059 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1315 SAMTools SNP 376508 376508 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1315 SAMTools SNP 376538 376538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1315 SAMTools SNP 377301 377301 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1315 SAMTools SNP 377322 377322 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1315 SAMTools SNP 377331 377331 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1315 SAMTools SNP 377601 377601 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.00012%2C0.018%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1315 SAMTools SNP 397970 397970 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1315 SAMTools SNP 400805 400805 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1315 SAMTools SNP 400824 400824 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1315 SAMTools SNP 406636 406636 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C9%2C16%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.1%2C2.5e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1315 SAMTools SNP 406640 406640 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1315 SAMTools SNP 424788 424788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C23%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 426740 426740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C61%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 427715 427715 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 428525 428525 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1315 SAMTools SNP 429944 429944 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1315 SAMTools SNP 430088 430088 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C191%2C8%2C112%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.097%2C3.3e-236%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1315 SAMTools SNP 430142 430142 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1315 SAMTools SNP 431269 431269 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0064%2C0.009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1315 SAMTools SNP 431301 431301 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0037%2C0.0019%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C250:83 scaffold1315 SAMTools SNP 432033 432033 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1315 SAMTools SNP 432432 432432 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C15%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.013%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1315 SAMTools SNP 432453 432453 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 434453 434453 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.44%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 509613 509613 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 509678 509678 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 509682 509682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1315 SAMTools SNP 509999 509999 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 510007 510007 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1315 SAMTools SNP 510092 510092 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1315 SAMTools SNP 517777 517777 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1315 SAMTools SNP 581462 581462 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1315 SAMTools SNP 581785 581785 31.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1315 SAMTools SNP 583966 583966 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold1315 SAMTools SNP 585649 585649 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1315 SAMTools SNP 586278 586278 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 590906 590906 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1315 SAMTools SNP 590956 590956 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 590966 590966 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1315 SAMTools SNP 617179 617179 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C99:40 scaffold1315 SAMTools SNP 620330 620330 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C48%2C0:93 scaffold1315 SAMTools SNP 624532 624532 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold1315 SAMTools SNP 624894 624894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1315 SAMTools SNP 627441 627441 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1315 SAMTools SNP 627955 627955 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.71%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1315 SAMTools SNP 627994 627994 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C2%2C15%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.42%2C4.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1315 SAMTools SNP 628138 628138 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.59%2C6.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1315 SAMTools SNP 628258 628258 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1315 SAMTools SNP 629090 629090 11.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1315 SAMTools SNP 629581 629581 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C5.5e-07%2C1%2C6.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C174:28 scaffold1315 SAMTools SNP 630312 630312 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold1315 SAMTools SNP 630346 630346 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C171:99 scaffold1315 SAMTools SNP 630350 630350 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1315 SAMTools SNP 630796 630796 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1315 SAMTools SNP 631144 631144 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1315 SAMTools SNP 631216 631216 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66.9%3BPV4%3D1%2C0.0014%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C110:97 scaffold1315 SAMTools SNP 632168 632168 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1315 SAMTools SNP 632239 632239 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1315 SAMTools SNP 654483 654483 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1315 SAMTools SNP 658265 658265 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C1%2C80%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.5e-102%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1315 SAMTools SNP 682918 682918 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C24%2C0:38 scaffold1315 SAMTools SNP 691464 691464 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1315 SAMTools SNP 691466 691466 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1315 SAMTools SNP 695923 695923 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1315 SAMTools SNP 706602 706602 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1316 SAMTools SNP 60478 60478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 65392 65392 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C33%2C0:63 scaffold1316 SAMTools SNP 70072 70072 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C15%2C13%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.16%2C5.2e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1316 SAMTools SNP 70309 70309 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1316 SAMTools SNP 70315 70315 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1316 SAMTools SNP 73451 73451 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1316 SAMTools SNP 74639 74639 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1316 SAMTools SNP 79466 79466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C185%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1316 SAMTools SNP 80342 80342 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C60%2C0:99 scaffold1316 SAMTools SNP 114715 114715 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C26%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1316 SAMTools SNP 115940 115940 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1316 SAMTools SNP 116367 116367 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1316 SAMTools SNP 116412 116412 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1316 SAMTools SNP 117117 117117 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 117623 117623 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1316 SAMTools SNP 117637 117637 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1316 SAMTools SNP 118205 118205 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1316 SAMTools SNP 118256 118256 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1316 SAMTools SNP 118585 118585 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold1316 SAMTools SNP 142328 142328 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.39%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1316 SAMTools SNP 142606 142606 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1316 SAMTools SNP 145367 145367 65.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold1316 SAMTools SNP 148290 148290 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1316 SAMTools SNP 160036 160036 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1316 SAMTools SNP 160205 160205 40.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1316 SAMTools SNP 162072 162072 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.37%2C1.7e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold1316 SAMTools SNP 174138 174138 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1316 SAMTools SNP 181069 181069 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1316 SAMTools SNP 186947 186947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1316 SAMTools SNP 187249 187249 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.13%2C0.049%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1316 SAMTools SNP 187293 187293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 187820 187820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 188434 188434 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 188440 188440 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 189217 189217 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1316 SAMTools SNP 189505 189505 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1316 SAMTools SNP 190204 190204 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1316 SAMTools SNP 190379 190379 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1316 SAMTools SNP 190820 190820 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1316 SAMTools SNP 191020 191020 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.13%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1316 SAMTools SNP 191331 191331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1316 SAMTools SNP 191823 191823 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1316 SAMTools SNP 192407 192407 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1316 SAMTools SNP 192437 192437 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 194435 194435 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.27%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1316 SAMTools SNP 195176 195176 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C171:99 scaffold1316 SAMTools SNP 195646 195646 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 197356 197356 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1316 SAMTools SNP 200086 200086 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1316 SAMTools SNP 200798 200798 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.6%3BPV4%3D0.4%2C0.0054%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C35:38 scaffold1316 SAMTools SNP 201705 201705 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.58%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1316 SAMTools SNP 202558 202558 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1316 SAMTools SNP 204032 204032 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.067%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C150:67 scaffold1316 SAMTools SNP 204125 204125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D5%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1316 SAMTools SNP 204694 204694 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C249:61 scaffold1316 SAMTools SNP 208727 208727 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1316 SAMTools SNP 209091 209091 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1316 SAMTools SNP 209452 209452 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1316 SAMTools SNP 209455 209455 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1316 SAMTools SNP 209458 209458 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1316 SAMTools SNP 209764 209764 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C68:71 scaffold1316 SAMTools SNP 209770 209770 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1316 SAMTools SNP 209981 209981 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1316 SAMTools SNP 210011 210011 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1316 SAMTools SNP 210032 210032 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1316 SAMTools SNP 210460 210460 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1316 SAMTools SNP 210520 210520 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C159:77 scaffold1316 SAMTools SNP 210786 210786 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1316 SAMTools SNP 211120 211120 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1316 SAMTools SNP 211585 211585 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1316 SAMTools SNP 211689 211689 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 212107 212107 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1316 SAMTools SNP 212137 212137 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1316 SAMTools SNP 212179 212179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1316 SAMTools SNP 212500 212500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1316 SAMTools SNP 212518 212518 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1316 SAMTools SNP 212530 212530 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold1316 SAMTools SNP 212955 212955 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C246:99 scaffold1316 SAMTools SNP 212961 212961 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C0.22%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C110:99 scaffold1316 SAMTools SNP 212988 212988 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1316 SAMTools SNP 213517 213517 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1316 SAMTools SNP 213547 213547 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1316 SAMTools SNP 213679 213679 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1316 SAMTools SNP 213955 213955 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1316 SAMTools SNP 214024 214024 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1316 SAMTools SNP 214051 214051 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold1316 SAMTools SNP 214066 214066 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1316 SAMTools SNP 214382 214382 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C190:75 scaffold1316 SAMTools SNP 218111 218111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1316 SAMTools SNP 218129 218129 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C36:39 scaffold1316 SAMTools SNP 219120 219120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C3%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1316 SAMTools SNP 219274 219274 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 219388 219388 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C16%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.55%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1316 SAMTools SNP 220222 220222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C19%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 220250 220250 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C10%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 220833 220833 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1316 SAMTools SNP 220839 220839 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C16%2C6%2C7%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.21%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1316 SAMTools SNP 220860 220860 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 224278 224278 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1316 SAMTools SNP 224287 224287 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1316 SAMTools SNP 224666 224666 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1316 SAMTools SNP 224669 224669 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1316 SAMTools SNP 227268 227268 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C48%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 227277 227277 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.071%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1316 SAMTools SNP 227295 227295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.0022%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 227470 227470 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C71:36 scaffold1316 SAMTools SNP 238427 238427 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.17%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C132:57 scaffold1316 SAMTools SNP 238795 238795 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1316 SAMTools SNP 242163 242163 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C175:99 scaffold1316 SAMTools SNP 242353 242353 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1316 SAMTools SNP 242362 242362 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C233:99 scaffold1316 SAMTools SNP 242728 242728 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1316 SAMTools SNP 243967 243967 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1316 SAMTools SNP 266316 266316 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1.3e-08%2C1.3e-15%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C235:91 scaffold1316 SAMTools SNP 266349 266349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 270584 270584 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 270599 270599 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.14%2C7.2e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1316 SAMTools SNP 270623 270623 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1316 SAMTools SNP 270656 270656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1316 SAMTools SNP 271201 271201 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1316 SAMTools SNP 271247 271247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C23%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.37%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1316 SAMTools SNP 271308 271308 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C62%2C0%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D0.0005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1316 SAMTools SNP 274795 274795 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 274984 274984 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C3%3BMQ%3D49%3BFQ%3D35%3BPV4%3D0.25%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1316 SAMTools SNP 275002 275002 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D47%3BFQ%3D22%3BPV4%3D1%2C0.12%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C243:52 scaffold1316 SAMTools SNP 275023 275023 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D48%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C203:96 scaffold1316 SAMTools SNP 275642 275642 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D48%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C203:96 scaffold1316 SAMTools SNP 276412 276412 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D34%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1316 SAMTools SNP 276719 276719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C18%3BMQ%3D45%3BFQ%3D-106%3BPV4%3D0.49%2C0.45%2C0.32%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold1316 SAMTools SNP 277214 277214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C49%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1316 SAMTools SNP 277271 277271 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C18%2C25%3BMQ%3D40%3BFQ%3D-109%3BPV4%3D0.64%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold1316 SAMTools SNP 277535 277535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C0%2C25%3BMQ%3D44%3BFQ%3D-71%3BPV4%3D0.14%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold1316 SAMTools SNP 297538 297538 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1.2e-14%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C157:99 scaffold1316 SAMTools SNP 297874 297874 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1316 SAMTools SNP 340189 340189 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold1316 SAMTools SNP 340427 340427 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1316 SAMTools SNP 340430 340430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1316 SAMTools SNP 345412 345412 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C6%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1316 SAMTools SNP 345490 345490 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C7%2C26%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1.5e-05%2C1.3e-41%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1316 SAMTools SNP 345569 345569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C53%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1316 SAMTools SNP 345999 345999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 346469 346469 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.17%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1316 SAMTools SNP 346474 346474 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.03%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1316 SAMTools SNP 346481 346481 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.56%2C0.031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1316 SAMTools SNP 346516 346516 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D5%2C0%2C20%2C32%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.013%2C0.15%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C25:28 scaffold1316 SAMTools SNP 348150 348150 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1316 SAMTools SNP 348800 348800 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1316 SAMTools SNP 348808 348808 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1316 SAMTools SNP 349378 349378 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C4%2C176%2C2%3BMQ%3D34%3BFQ%3D192%3BPV4%3D0.067%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C222:99 scaffold1316 SAMTools SNP 372028 372028 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1316 SAMTools SNP 373680 373680 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1316 SAMTools SNP 373888 373888 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1316 SAMTools SNP 374338 374338 8.22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1316 SAMTools SNP 374377 374377 73.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold1316 SAMTools SNP 374392 374392 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C229:33 scaffold1316 SAMTools SNP 374966 374966 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 375719 375719 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1316 SAMTools SNP 376460 376460 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.17%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C247:99 scaffold1316 SAMTools SNP 376467 376467 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1316 SAMTools SNP 376800 376800 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.6%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1316 SAMTools SNP 376898 376898 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.47%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C197:72 scaffold1316 SAMTools SNP 376901 376901 156 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66%2C214%2C0%2C208:39 scaffold1316 SAMTools SNP 376917 376917 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1316 SAMTools SNP 377785 377785 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.032%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C171:99 scaffold1316 SAMTools SNP 377799 377799 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1316 SAMTools SNP 377802 377802 135 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C87%2C69%2C165%2C0%2C159:33 scaffold1316 SAMTools SNP 377866 377866 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1316 SAMTools SNP 378179 378179 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C1.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1316 SAMTools SNP 378192 378192 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0013%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C217:36 scaffold1316 SAMTools SNP 378566 378566 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 378575 378575 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1316 SAMTools SNP 378604 378604 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1316 SAMTools SNP 379317 379317 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1316 SAMTools SNP 379347 379347 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1316 SAMTools SNP 380528 380528 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C217:99 scaffold1316 SAMTools SNP 380584 380584 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1316 SAMTools SNP 381293 381293 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.03%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1316 SAMTools SNP 381418 381418 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1316 SAMTools SNP 382136 382136 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.55%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C252:99 scaffold1316 SAMTools SNP 382193 382193 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C45%2C0:87 scaffold1316 SAMTools SNP 382249 382249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1316 SAMTools SNP 385132 385132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1316 SAMTools SNP 385851 385851 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.52%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1316 SAMTools SNP 387648 387648 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1316 SAMTools SNP 400357 400357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C8%3BMQ%3D44%3BFQ%3D-5.45%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1316 SAMTools SNP 403483 403483 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D13%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C45%2C0:59 scaffold1316 SAMTools SNP 405564 405564 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1316 SAMTools SNP 405681 405681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C40%2C2%3BMQ%3D48%3BFQ%3D-51%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1316 SAMTools SNP 414450 414450 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C78%2C0:99 scaffold1316 SAMTools SNP 416624 416624 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.57%2C9.2e-15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1316 SAMTools SNP 417536 417536 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold1316 SAMTools SNP 420741 420741 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1316 SAMTools SNP 420861 420861 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.35%2C8.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1316 SAMTools SNP 421032 421032 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C53%2C3%2C35%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C5.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1316 SAMTools SNP 421443 421443 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C5%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1316 SAMTools SNP 421464 421464 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C0.47%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1316 SAMTools SNP 422102 422102 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 422171 422171 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1316 SAMTools SNP 422603 422603 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1316 SAMTools SNP 423554 423554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1316 SAMTools SNP 423605 423605 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.045%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C212:99 scaffold1316 SAMTools SNP 423650 423650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C11%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0094%2C7.3e-24%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1316 SAMTools SNP 426246 426246 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.12%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1316 SAMTools SNP 427440 427440 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C15%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C2.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1316 SAMTools SNP 428192 428192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1316 SAMTools SNP 428198 428198 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C1%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.055%2C0.35%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1316 SAMTools SNP 437967 437967 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C18%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.042%2C6.5e-44%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1316 SAMTools SNP 438447 438447 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C149:99 scaffold1316 SAMTools SNP 438564 438564 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C3.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C231:99 scaffold1316 SAMTools SNP 439292 439292 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C36%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C175%2C0:99 scaffold1316 SAMTools SNP 450421 450421 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1316 SAMTools SNP 450443 450443 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1316 SAMTools SNP 459146 459146 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3080%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1297%2C792%2C397%2C306%3BMQ%3D36%3BFQ%3D145%3BPV4%3D0.0096%2C1%2C0.026%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C247:99 scaffold1316 SAMTools SNP 460960 460960 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C22%3BMQ%3D45%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1316 SAMTools SNP 461553 461553 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D718%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C109%2C234%2C367%3BMQ%3D32%3BFQ%3D-282%3BPV4%3D1.6e-13%2C9.1e-16%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1316 SAMTools SNP 461589 461589 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D810%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C88%2C25%2C407%3BMQ%3D32%3BFQ%3D-282%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1316 SAMTools SNP 461625 461625 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C331%3BMQ%3D43%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1316 SAMTools SNP 462013 462013 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1462%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C2%2C1086%2C338%3BMQ%3D23%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1317 SAMTools SNP 76 76 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1317 SAMTools SNP 91 91 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1317 SAMTools SNP 496 496 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1317 SAMTools SNP 11569 11569 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1317 SAMTools SNP 14140 14140 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0138%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1317 SAMTools SNP 14164 14164 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1317 SAMTools SNP 15974 15974 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1317 SAMTools SNP 16226 16226 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1317 SAMTools SNP 20616 20616 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 43017 43017 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1317 SAMTools SNP 46755 46755 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 46792 46792 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1317 SAMTools SNP 46806 46806 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1317 SAMTools SNP 46812 46812 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1317 SAMTools SNP 49508 49508 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C12%2C2%3BMQ%3D47%3BFQ%3D79%3BPV4%3D0.17%2C2.1e-19%2C0.006%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C244:99 scaffold1317 SAMTools SNP 49722 49722 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C37%2C23%2C25%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0075%2C9.1e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1317 SAMTools SNP 49730 49730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1317 SAMTools SNP 50253 50253 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1317 SAMTools SNP 51021 51021 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D46%3BFQ%3D61%3BPV4%3D1%2C0.045%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C204:91 scaffold1317 SAMTools SNP 51034 51034 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D48%3BFQ%3D122%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C186:99 scaffold1317 SAMTools SNP 51037 51037 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D46%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C201:56 scaffold1317 SAMTools SNP 54314 54314 28.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1317 SAMTools SNP 55732 55732 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 55742 55742 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 63755 63755 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1317 SAMTools SNP 95392 95392 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1317 SAMTools SNP 95424 95424 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C207:99 scaffold1317 SAMTools SNP 96378 96378 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1317 SAMTools SNP 104608 104608 201 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold1317 SAMTools SNP 104734 104734 80 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C51%2C0%2C96%2C11%2C90:99 scaffold1317 SAMTools SNP 132517 132517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 136282 136282 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1317 SAMTools SNP 136293 136293 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1318 SAMTools SNP 26362 26362 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1318 SAMTools SNP 44402 44402 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1318 SAMTools SNP 59237 59237 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1318 SAMTools SNP 79523 79523 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1318 SAMTools SNP 101236 101236 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C85:46 scaffold1318 SAMTools SNP 132444 132444 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold132 SAMTools SNP 18656 18656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold132 SAMTools SNP 18692 18692 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold132 SAMTools SNP 18731 18731 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C12%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.48%2C4.7e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C31%2C0:59 scaffold132 SAMTools SNP 18814 18814 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold132 SAMTools SNP 23449 23449 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C255%2C0:99 scaffold132 SAMTools SNP 23473 23473 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C57%2C20%2C48%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C2e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold132 SAMTools SNP 23522 23522 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 24178 24178 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C30%2C0:57 scaffold132 SAMTools SNP 24290 24290 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold132 SAMTools SNP 34561 34561 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold132 SAMTools SNP 47089 47089 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold132 SAMTools SNP 47101 47101 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold132 SAMTools SNP 47475 47475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold132 SAMTools SNP 63480 63480 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold132 SAMTools SNP 70496 70496 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold132 SAMTools SNP 71278 71278 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold132 SAMTools SNP 80817 80817 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold132 SAMTools SNP 80951 80951 19.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold132 SAMTools SNP 85654 85654 14.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold132 SAMTools SNP 85704 85704 8.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold132 SAMTools SNP 85866 85866 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold132 SAMTools SNP 86032 86032 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.14%3BPV4%3D1%2C2.2e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C32:35 scaffold132 SAMTools SNP 87625 87625 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold132 SAMTools SNP 88224 88224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C7%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold132 SAMTools SNP 88407 88407 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0097%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold132 SAMTools SNP 88411 88411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold132 SAMTools SNP 89273 89273 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 89291 89291 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 89333 89333 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold132 SAMTools SNP 89389 89389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold132 SAMTools SNP 90064 90064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 90376 90376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 90409 90409 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold132 SAMTools SNP 90418 90418 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold132 SAMTools SNP 90790 90790 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.55%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold132 SAMTools SNP 90796 90796 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold132 SAMTools SNP 91608 91608 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold132 SAMTools SNP 91677 91677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold132 SAMTools SNP 92814 92814 11.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold132 SAMTools SNP 93549 93549 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold132 SAMTools SNP 94325 94325 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C185:74 scaffold132 SAMTools SNP 94332 94332 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.43%2C0.14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C163:94 scaffold132 SAMTools SNP 94410 94410 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.52%2C1.9e-13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C185:50 scaffold132 SAMTools SNP 94506 94506 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold132 SAMTools SNP 96726 96726 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold132 SAMTools SNP 98707 98707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold132 SAMTools SNP 102649 102649 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C5e-24%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C250:99 scaffold132 SAMTools SNP 102671 102671 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold132 SAMTools SNP 102763 102763 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C51%2C0:99 scaffold132 SAMTools SNP 102813 102813 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold132 SAMTools SNP 103244 103244 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C33%2C0:63 scaffold132 SAMTools SNP 103376 103376 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C39%2C0:59 scaffold132 SAMTools SNP 103831 103831 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.07%2C0.0053%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold132 SAMTools SNP 103924 103924 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D75.9%3BPV4%3D0.22%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C119:99 scaffold132 SAMTools SNP 104263 104263 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C24%2C0:44 scaffold132 SAMTools SNP 104357 104357 89.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C21%2C0%2C110%2C0%2C107:39 scaffold132 SAMTools SNP 104821 104821 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C14%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold132 SAMTools SNP 104896 104896 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C240:58 scaffold132 SAMTools SNP 105262 105262 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C118:54 scaffold132 SAMTools SNP 105374 105374 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C112:51 scaffold132 SAMTools SNP 106458 106458 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1321 SAMTools SNP 28034 28034 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1321 SAMTools SNP 29921 29921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1321 SAMTools SNP 29948 29948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1321 SAMTools SNP 30068 30068 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1321 SAMTools SNP 30657 30657 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1321 SAMTools SNP 33904 33904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1321 SAMTools SNP 36199 36199 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1321 SAMTools SNP 36202 36202 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.22%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1321 SAMTools SNP 36755 36755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1321 SAMTools SNP 36821 36821 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D47%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C175%2C0:99 scaffold1321 SAMTools SNP 36941 36941 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C12%3BMQ%3D44%3BFQ%3D93%3BPV4%3D1%2C0.073%2C8.5e-06%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1321 SAMTools SNP 40333 40333 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1321 SAMTools SNP 40359 40359 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1321 SAMTools SNP 40786 40786 191 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C30%2C6%2C210%2C0%2C207:45 scaffold1321 SAMTools SNP 41515 41515 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.015%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C150:99 scaffold1321 SAMTools SNP 43575 43575 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1321 SAMTools SNP 43594 43594 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0109%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00072%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1321 SAMTools SNP 44496 44496 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1321 SAMTools SNP 44535 44535 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1321 SAMTools SNP 44855 44855 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1321 SAMTools SNP 53322 53322 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1321 SAMTools SNP 136196 136196 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1321 SAMTools SNP 137466 137466 27.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1321 SAMTools SNP 141881 141881 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1321 SAMTools SNP 142442 142442 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1321 SAMTools SNP 157099 157099 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1321 SAMTools SNP 187929 187929 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1321 SAMTools SNP 219156 219156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1321 SAMTools SNP 227492 227492 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C79:56 scaffold1321 SAMTools SNP 227603 227603 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C63%2C0:99 scaffold1321 SAMTools SNP 267219 267219 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1321 SAMTools SNP 268996 268996 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1321 SAMTools SNP 269360 269360 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C243:94 scaffold1321 SAMTools SNP 270574 270574 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1321 SAMTools SNP 271296 271296 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D33%3BFQ%3D38.5%3BPV4%3D0.17%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C75:68 scaffold1322 SAMTools SNP 9275 9275 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 9280 9280 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1322 SAMTools SNP 10178 10178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 10195 10195 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold1322 SAMTools SNP 11046 11046 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C186:43 scaffold1322 SAMTools SNP 11228 11228 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1322 SAMTools SNP 13407 13407 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1322 SAMTools SNP 28432 28432 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 28492 28492 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C6.4e-05%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C142:99 scaffold1322 SAMTools SNP 28494 28494 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C254:99 scaffold1322 SAMTools SNP 29153 29153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1322 SAMTools SNP 29234 29234 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C25%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.14%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C124:99 scaffold1322 SAMTools SNP 37066 37066 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1322 SAMTools SNP 77621 77621 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1322 SAMTools SNP 77631 77631 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1322 SAMTools SNP 78834 78834 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C72%2C25%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 78888 78888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1322 SAMTools SNP 79076 79076 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 79261 79261 42.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C11:14 scaffold1322 SAMTools SNP 79666 79666 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C9%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1322 SAMTools SNP 79708 79708 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C45%2C8%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1322 SAMTools SNP 79711 79711 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C68%2C15%2C11%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1322 SAMTools SNP 79978 79978 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C28%2C12%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 80089 80089 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C28%2C60%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 80442 80442 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 81600 81600 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C13%2C102%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1.1e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 81720 81720 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C240%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C255%2C0:99 scaffold1322 SAMTools SNP 82039 82039 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C189%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.1e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold1322 SAMTools SNP 144382 144382 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1322 SAMTools SNP 144403 144403 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1322 SAMTools SNP 144947 144947 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1322 SAMTools SNP 175115 175115 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C51%2C86%2C29%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.078%2C3.5e-93%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 175158 175158 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C30%2C0:57 scaffold1322 SAMTools SNP 175601 175601 6.95 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1322 SAMTools SNP 175773 175773 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.035%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C156:61 scaffold1322 SAMTools SNP 175779 175779 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.041%2C0.048%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C177:73 scaffold1322 SAMTools SNP 176385 176385 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C75%2C0:99 scaffold1322 SAMTools SNP 212357 212357 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1322 SAMTools SNP 212770 212770 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 213815 213815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C26%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 214371 214371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1322 SAMTools SNP 216187 216187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C35%2C43%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 218056 218056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C81%2C17%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 218092 218092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C53%2C41%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 218359 218359 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C43%2C61%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 218804 218804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1322 SAMTools SNP 219299 219299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C34%2C85%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 219768 219768 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C97%2C35%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 219777 219777 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C99%2C17%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 220023 220023 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C39%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C0.035%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 220614 220614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C45%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1322 SAMTools SNP 220658 220658 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C27%2C11%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0055%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1322 SAMTools SNP 220826 220826 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1322 SAMTools SNP 220895 220895 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C17%2C70%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C7.9e-47%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 221249 221249 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C231%2C0%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 234082 234082 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1322 SAMTools SNP 234629 234629 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1322 SAMTools SNP 234740 234740 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C127:77 scaffold1322 SAMTools SNP 234830 234830 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1322 SAMTools SNP 235507 235507 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.015%2C0.096%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C209:99 scaffold1322 SAMTools SNP 235538 235538 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.026%2C0.28%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1322 SAMTools SNP 235840 235840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1322 SAMTools SNP 238351 238351 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.033%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C198:60 scaffold1322 SAMTools SNP 238378 238378 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C153:99 scaffold1322 SAMTools SNP 239089 239089 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.26%2C0.0071%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1322 SAMTools SNP 239543 239543 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C201:97 scaffold1322 SAMTools SNP 239639 239639 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 239648 239648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 240221 240221 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 240748 240748 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0076%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1322 SAMTools SNP 240774 240774 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 241078 241078 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1322 SAMTools SNP 241377 241377 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 241681 241681 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1322 SAMTools SNP 241739 241739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1322 SAMTools SNP 244101 244101 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 244140 244140 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 252248 252248 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1322 SAMTools SNP 252283 252283 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1322 SAMTools SNP 254885 254885 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1322 SAMTools SNP 254902 254902 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 261338 261338 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1322 SAMTools SNP 275028 275028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 280737 280737 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C20%2C27%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C7.3e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 282052 282052 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1322 SAMTools SNP 282387 282387 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1322 SAMTools SNP 282547 282547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 283036 283036 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1322 SAMTools SNP 284582 284582 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 284605 284605 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C14%2C112%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0018%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold1322 SAMTools SNP 284623 284623 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C125%2C7%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0046%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1322 SAMTools SNP 284626 284626 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C124%2C7%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0087%2C0.3%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1322 SAMTools SNP 284657 284657 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C37%2C0%2C16%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0018%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1322 SAMTools SNP 285057 285057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 286904 286904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1322 SAMTools SNP 288005 288005 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 288178 288178 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 288187 288187 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0018%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1322 SAMTools SNP 289119 289119 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold1322 SAMTools SNP 289122 289122 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold1322 SAMTools SNP 290673 290673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C10%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1322 SAMTools SNP 292134 292134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1322 SAMTools SNP 292290 292290 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold1322 SAMTools SNP 292302 292302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1322 SAMTools SNP 292588 292588 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1322 SAMTools SNP 292639 292639 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1322 SAMTools SNP 292669 292669 98.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1322 SAMTools SNP 294631 294631 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 294640 294640 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1322 SAMTools SNP 294670 294670 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 297249 297249 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1322 SAMTools SNP 297252 297252 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1322 SAMTools SNP 297548 297548 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C49%2C18%2C6%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.042%2C0.057%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1322 SAMTools SNP 297554 297554 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C49%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 302286 302286 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C21%2C47%2C40%3BMQ%3D43%3BFQ%3D103%3BPV4%3D0.0067%2C6.9e-117%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1322 SAMTools SNP 302759 302759 43.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1322 SAMTools SNP 303431 303431 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C45%2C0:83 scaffold1322 SAMTools SNP 330475 330475 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1322 SAMTools SNP 346282 346282 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C28%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C4.2e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C241:47 scaffold1322 SAMTools SNP 348014 348014 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 351517 351517 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 357541 357541 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1322 SAMTools SNP 394453 394453 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C32:35 scaffold1322 SAMTools SNP 395185 395185 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C38:41 scaffold1322 SAMTools SNP 395241 395241 85 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C126%2C0%2C118%2C110%2C115:99 scaffold1322 SAMTools SNP 395422 395422 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1322 SAMTools SNP 398232 398232 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1322 SAMTools SNP 398660 398660 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1322 SAMTools SNP 398674 398674 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1322 SAMTools SNP 399578 399578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1322 SAMTools SNP 399605 399605 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.59%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C240:99 scaffold1322 SAMTools SNP 399897 399897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 399906 399906 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 399912 399912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 400017 400017 59.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1322 SAMTools SNP 400046 400046 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 401587 401587 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 417519 417519 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 418321 418321 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 420391 420391 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1322 SAMTools SNP 424318 424318 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1322 SAMTools SNP 425404 425404 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 426356 426356 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C45%2C0:87 scaffold1322 SAMTools SNP 434076 434076 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1322 SAMTools SNP 434102 434102 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1322 SAMTools SNP 438788 438788 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D29%3BFQ%3D4.13%3BPV4%3D1%2C1%2C0.31%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C29:32 scaffold1322 SAMTools SNP 439103 439103 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D29%3BFQ%3D4.13%3BPV4%3D1%2C0.19%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C29:32 scaffold1322 SAMTools SNP 439143 439143 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold1322 SAMTools SNP 439166 439166 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C6%3BMQ%3D37%3BFQ%3D51%3BPV4%3D0.1%2C1%2C0.026%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C173:81 scaffold1322 SAMTools SNP 439311 439311 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C0%3BMQ%3D42%3BFQ%3D4.77%3BPV4%3D0.49%2C0.43%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1322 SAMTools SNP 439341 439341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D43%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1322 SAMTools SNP 439665 439665 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C4%3BMQ%3D48%3BFQ%3D67%3BPV4%3D0.0079%2C0.39%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1322 SAMTools SNP 439678 439678 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0025%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1322 SAMTools SNP 440876 440876 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1322 SAMTools SNP 440893 440893 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1322 SAMTools SNP 445460 445460 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C6.6e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 445591 445591 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C21%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C214%2C0:99 scaffold1322 SAMTools SNP 445986 445986 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.1e-24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1322 SAMTools SNP 446539 446539 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1322 SAMTools SNP 446902 446902 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.17%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 446974 446974 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.016%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 447873 447873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1322 SAMTools SNP 448345 448345 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.14%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1322 SAMTools SNP 453618 453618 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.53%2C0.00085%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1322 SAMTools SNP 453696 453696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1322 SAMTools SNP 455402 455402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 455432 455432 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 455976 455976 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C72%2C0:99 scaffold1322 SAMTools SNP 457949 457949 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C163:99 scaffold1322 SAMTools SNP 459811 459811 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C26%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 460590 460590 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.64%2C1%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1322 SAMTools SNP 461321 461321 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1322 SAMTools SNP 462389 462389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1322 SAMTools SNP 462651 462651 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C14%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1322 SAMTools SNP 462839 462839 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.25%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C222:99 scaffold1322 SAMTools SNP 462854 462854 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C183:82 scaffold1322 SAMTools SNP 463564 463564 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.15%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1322 SAMTools SNP 463848 463848 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C10%2C6%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.23%2C1.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1322 SAMTools SNP 463991 463991 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C21:24 scaffold1322 SAMTools SNP 468813 468813 27.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold1322 SAMTools SNP 469221 469221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C42%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1322 SAMTools SNP 470478 470478 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1322 SAMTools SNP 473174 473174 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C46%2C5%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0024%2C0.00093%2C1%2C1.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1322 SAMTools SNP 473497 473497 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-186%3BPV4%3D1%2C7.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C159%2C0:99 scaffold1322 SAMTools SNP 476374 476374 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0034%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1322 SAMTools SNP 478274 478274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1322 SAMTools SNP 509199 509199 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.3e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C184:46 scaffold1322 SAMTools SNP 509370 509370 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1322 SAMTools SNP 526263 526263 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0048%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1322 SAMTools SNP 532928 532928 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C180:99 scaffold1322 SAMTools SNP 532958 532958 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 532973 532973 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 533003 533003 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1322 SAMTools SNP 533482 533482 22.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1322 SAMTools SNP 533730 533730 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1322 SAMTools SNP 536113 536113 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold1322 SAMTools SNP 536154 536154 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1322 SAMTools SNP 537772 537772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 539035 539035 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1322 SAMTools SNP 539069 539069 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1322 SAMTools SNP 540903 540903 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1322 SAMTools SNP 541437 541437 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1322 SAMTools SNP 542522 542522 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.048%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C160:52 scaffold1322 SAMTools SNP 545453 545453 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C27%2C0:51 scaffold1322 SAMTools SNP 547183 547183 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1322 SAMTools SNP 547204 547204 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold1322 SAMTools SNP 548668 548668 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 548725 548725 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold1322 SAMTools SNP 549121 549121 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.015%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1322 SAMTools SNP 554967 554967 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1322 SAMTools SNP 555048 555048 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 555100 555100 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1322 SAMTools SNP 558321 558321 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1322 SAMTools SNP 559535 559535 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C66:52 scaffold1322 SAMTools SNP 560335 560335 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 560356 560356 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 560412 560412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1322 SAMTools SNP 561052 561052 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C100:52 scaffold1322 SAMTools SNP 561070 561070 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1323 SAMTools SNP 46435 46435 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 48071 48071 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1323 SAMTools SNP 53539 53539 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1323 SAMTools SNP 70860 70860 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1323 SAMTools SNP 89265 89265 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1323 SAMTools SNP 95222 95222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 95438 95438 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1323 SAMTools SNP 102928 102928 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 102942 102942 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1323 SAMTools SNP 104755 104755 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1323 SAMTools SNP 104773 104773 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.61%2C0.11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1323 SAMTools SNP 106453 106453 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C241:99 scaffold1323 SAMTools SNP 121177 121177 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C235:60 scaffold1323 SAMTools SNP 121401 121401 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C0%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1323 SAMTools SNP 146319 146319 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold1323 SAMTools SNP 160156 160156 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1323 SAMTools SNP 160544 160544 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C205:99 scaffold1323 SAMTools SNP 166852 166852 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1323 SAMTools SNP 176866 176866 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1323 SAMTools SNP 179002 179002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1323 SAMTools SNP 179312 179312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1323 SAMTools SNP 179352 179352 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1323 SAMTools SNP 179358 179358 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0056%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C194:42 scaffold1323 SAMTools SNP 179874 179874 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1323 SAMTools SNP 180561 180561 39.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1323 SAMTools SNP 183057 183057 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1323 SAMTools SNP 183473 183473 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1323 SAMTools SNP 184712 184712 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1323 SAMTools SNP 184733 184733 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 184734 184734 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 185899 185899 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1323 SAMTools SNP 190548 190548 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 190562 190562 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 192441 192441 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1323 SAMTools SNP 192462 192462 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1323 SAMTools SNP 193224 193224 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1323 SAMTools SNP 193270 193270 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.14%2C0.013%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C185:58 scaffold1323 SAMTools SNP 193458 193458 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1323 SAMTools SNP 193468 193468 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1323 SAMTools SNP 193481 193481 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.34%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C41:44 scaffold1323 SAMTools SNP 193496 193496 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.023%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1323 SAMTools SNP 193521 193521 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1323 SAMTools SNP 194139 194139 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0037%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1323 SAMTools SNP 198147 198147 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1323 SAMTools SNP 198247 198247 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1323 SAMTools SNP 199227 199227 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80.9%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C124:99 scaffold1323 SAMTools SNP 199269 199269 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1323 SAMTools SNP 200835 200835 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C249:99 scaffold1323 SAMTools SNP 208597 208597 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1323 SAMTools SNP 208601 208601 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold1323 SAMTools SNP 209061 209061 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1323 SAMTools SNP 209988 209988 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1323 SAMTools SNP 210806 210806 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold1324 SAMTools SNP 10391 10391 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 14104 14104 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 14789 14789 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1324 SAMTools SNP 14795 14795 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 15025 15025 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C239:99 scaffold1324 SAMTools SNP 15154 15154 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold1324 SAMTools SNP 16434 16434 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1324 SAMTools SNP 18217 18217 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1324 SAMTools SNP 18226 18226 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1324 SAMTools SNP 18391 18391 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold1324 SAMTools SNP 21387 21387 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1324 SAMTools SNP 23653 23653 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1324 SAMTools SNP 35962 35962 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C42%2C0:77 scaffold1324 SAMTools SNP 36042 36042 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold1324 SAMTools SNP 36054 36054 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold1324 SAMTools SNP 38067 38067 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1324 SAMTools SNP 38110 38110 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C254:99 scaffold1324 SAMTools SNP 39130 39130 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 39177 39177 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1324 SAMTools SNP 39182 39182 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1324 SAMTools SNP 39183 39183 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1324 SAMTools SNP 39511 39511 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1324 SAMTools SNP 41318 41318 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1324 SAMTools SNP 43422 43422 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 46176 46176 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1324 SAMTools SNP 47125 47125 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1324 SAMTools SNP 47138 47138 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold1324 SAMTools SNP 63511 63511 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C3%3BMQ%3D45%3BFQ%3D150%3BPV4%3D0.61%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C224:99 scaffold1324 SAMTools SNP 63996 63996 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 64264 64264 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 64288 64288 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.11%2C1%2C1%2C9.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1324 SAMTools SNP 65981 65981 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1324 SAMTools SNP 67322 67322 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1324 SAMTools SNP 67778 67778 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1.3e-05%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1324 SAMTools SNP 67916 67916 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1324 SAMTools SNP 68248 68248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C34%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 68385 68385 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C1%2C24%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C2.4e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1324 SAMTools SNP 68888 68888 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1324 SAMTools SNP 68890 68890 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold1324 SAMTools SNP 68892 68892 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C38:41 scaffold1324 SAMTools SNP 68894 68894 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1324 SAMTools SNP 80339 80339 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1324 SAMTools SNP 82830 82830 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1324 SAMTools SNP 82952 82952 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0232%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1324 SAMTools SNP 82958 82958 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C14%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold1324 SAMTools SNP 83888 83888 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 85640 85640 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1324 SAMTools SNP 85646 85646 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C127:55 scaffold1324 SAMTools SNP 87201 87201 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1324 SAMTools SNP 87755 87755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 89788 89788 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C46%2C20%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 89832 89832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C51%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.28%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 91200 91200 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C12%2C94%3BMQ%3D50%3BFQ%3D-243%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C216%2C0:99 scaffold1324 SAMTools SNP 93345 93345 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1324 SAMTools SNP 93499 93499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1324 SAMTools SNP 93514 93514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1324 SAMTools SNP 96238 96238 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1324 SAMTools SNP 98241 98241 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1324 SAMTools SNP 99357 99357 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1324 SAMTools SNP 104080 104080 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C12:15 scaffold1324 SAMTools SNP 104143 104143 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1324 SAMTools SNP 107972 107972 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C209:69 scaffold1324 SAMTools SNP 108020 108020 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C163:53 scaffold1324 SAMTools SNP 108031 108031 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold1324 SAMTools SNP 108214 108214 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1324 SAMTools SNP 109893 109893 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1324 SAMTools SNP 109953 109953 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 111167 111167 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1324 SAMTools SNP 111199 111199 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1.5e-06%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold1324 SAMTools SNP 112171 112171 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1324 SAMTools SNP 113344 113344 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1324 SAMTools SNP 113427 113427 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 113770 113770 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C38%2C1%2C31%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.63%2C4.4e-63%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1324 SAMTools SNP 113864 113864 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold1324 SAMTools SNP 115735 115735 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1324 SAMTools SNP 118866 118866 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1324 SAMTools SNP 120844 120844 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C39%2C0:75 scaffold1324 SAMTools SNP 128181 128181 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1324 SAMTools SNP 139170 139170 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C30%2C0:57 scaffold1324 SAMTools SNP 139784 139784 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C169%2C0:99 scaffold1324 SAMTools SNP 141254 141254 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1324 SAMTools SNP 142350 142350 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1324 SAMTools SNP 142353 142353 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1324 SAMTools SNP 143240 143240 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C21:24 scaffold1324 SAMTools SNP 143321 143321 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C63:66 scaffold1324 SAMTools SNP 143330 143330 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold1324 SAMTools SNP 144528 144528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C196%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 144604 144604 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D723%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1324 SAMTools SNP 145061 145061 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D769%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C348%2C0%2C416%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 145116 145116 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C2%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C231:99 scaffold1324 SAMTools SNP 145123 145123 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C18%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D2.1e-09%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C225:99 scaffold1324 SAMTools SNP 145877 145877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C3%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1324 SAMTools SNP 146852 146852 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1324 SAMTools SNP 146861 146861 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1324 SAMTools SNP 146870 146870 99.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1324 SAMTools SNP 147530 147530 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1324 SAMTools SNP 147542 147542 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1324 SAMTools SNP 149471 149471 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1324 SAMTools SNP 149507 149507 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C33%2C0:63 scaffold1324 SAMTools SNP 149864 149864 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold1324 SAMTools SNP 149898 149898 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1324 SAMTools SNP 150118 150118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1324 SAMTools SNP 150157 150157 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1324 SAMTools SNP 150265 150265 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C93%2C0:99 scaffold1324 SAMTools SNP 150475 150475 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C7%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.014%2C1.2e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1324 SAMTools SNP 150529 150529 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C7%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.017%2C2.8e-19%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1324 SAMTools SNP 151455 151455 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C255%2C0:99 scaffold1324 SAMTools SNP 160546 160546 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C15%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D5.9e-06%2C5.7e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1324 SAMTools SNP 162758 162758 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1324 SAMTools SNP 162776 162776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 163184 163184 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.015%2C0.0083%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C183:99 scaffold1324 SAMTools SNP 163196 163196 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.025%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C244:31 scaffold1324 SAMTools SNP 163222 163222 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold1324 SAMTools SNP 165743 165743 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1324 SAMTools SNP 166297 166297 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C235:99 scaffold1324 SAMTools SNP 166321 166321 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C242:99 scaffold1324 SAMTools SNP 166390 166390 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.16%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1324 SAMTools SNP 166783 166783 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1324 SAMTools SNP 168508 168508 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C69%2C0:99 scaffold1324 SAMTools SNP 169115 169115 11.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1324 SAMTools SNP 169258 169258 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold1324 SAMTools SNP 169401 169401 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1324 SAMTools SNP 175776 175776 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1324 SAMTools SNP 175880 175880 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.076%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1324 SAMTools SNP 177134 177134 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 177179 177179 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1324 SAMTools SNP 178926 178926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1324 SAMTools SNP 179483 179483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1324 SAMTools SNP 183182 183182 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C57%2C0:99 scaffold1324 SAMTools SNP 183484 183484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C3%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1324 SAMTools SNP 184139 184139 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D658%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C190%2C52%2C112%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1.5e-10%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1324 SAMTools SNP 184232 184232 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C249%2C69%2C29%3BMQ%3D50%3BFQ%3D100%3BPV4%3D3.1e-12%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1324 SAMTools SNP 184241 184241 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C208%2C286%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 184469 184469 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C261%2C27%2C39%3BMQ%3D50%3BFQ%3D208%3BPV4%3D4.9e-10%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1324 SAMTools SNP 184499 184499 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C94%2C32%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 184744 184744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 184807 184807 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C41%2C61%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.007%2C3e-135%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1324 SAMTools SNP 185740 185740 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C42%2C27%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 186602 186602 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C280%2C16%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 187887 187887 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 187926 187926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 188170 188170 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold1324 SAMTools SNP 188259 188259 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1324 SAMTools SNP 188656 188656 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.62%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1324 SAMTools SNP 188692 188692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1324 SAMTools SNP 188742 188742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C7%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-05%2C0.13%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 189267 189267 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C71%2C9%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.038%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1324 SAMTools SNP 189285 189285 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1324 SAMTools SNP 189292 189292 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C54%2C0:99 scaffold1324 SAMTools SNP 189853 189853 38.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1324 SAMTools SNP 189919 189919 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1324 SAMTools SNP 190326 190326 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1324 SAMTools SNP 190360 190360 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1324 SAMTools SNP 190636 190636 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1324 SAMTools SNP 190684 190684 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1324 SAMTools SNP 192855 192855 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1324 SAMTools SNP 193322 193322 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1324 SAMTools SNP 193396 193396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold1324 SAMTools SNP 193704 193704 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1324 SAMTools SNP 194220 194220 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1324 SAMTools SNP 198296 198296 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold1324 SAMTools SNP 198773 198773 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1324 SAMTools SNP 201237 201237 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C54%2C0:82 scaffold1324 SAMTools SNP 201491 201491 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C29%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.31%2C6.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C66:39 scaffold1324 SAMTools SNP 201899 201899 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C22%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 203228 203228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C61%2C17%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 209694 209694 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1324 SAMTools SNP 210666 210666 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 218718 218718 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1324 SAMTools SNP 218719 218719 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1324 SAMTools SNP 222158 222158 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C174:36 scaffold1324 SAMTools SNP 232846 232846 116 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C54%2C0%2C149%2C41%2C146:99 scaffold1324 SAMTools SNP 234358 234358 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1324 SAMTools SNP 234523 234523 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1324 SAMTools SNP 234732 234732 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.065%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 234751 234751 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 234798 234798 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 234945 234945 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 235346 235346 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 240691 240691 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C29%2C38%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.00053%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 241764 241764 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C46%2C0%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 241830 241830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C10%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.0035%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 241845 241845 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C3%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1324 SAMTools SNP 241851 241851 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1324 SAMTools SNP 241856 241856 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C17%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.0091%2C1%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1324 SAMTools SNP 242988 242988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C59%2C3%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.025%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1324 SAMTools SNP 243777 243777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 243906 243906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1324 SAMTools SNP 243936 243936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1324 SAMTools SNP 245566 245566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C39%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1324 SAMTools SNP 246130 246130 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C4%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1324 SAMTools SNP 249332 249332 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C57%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.33%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1324 SAMTools SNP 249341 249341 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C9%2C21%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.35%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1324 SAMTools SNP 249386 249386 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D79%2C34%2C0%2C18%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D7.2e-09%2C1%2C1%2C8.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1324 SAMTools SNP 249401 249401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C57%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1324 SAMTools SNP 253755 253755 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C71%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1324 SAMTools SNP 260565 260565 28.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold1324 SAMTools SNP 260725 260725 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1324 SAMTools SNP 297290 297290 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1324 SAMTools SNP 297296 297296 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1324 SAMTools SNP 297518 297518 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1324 SAMTools SNP 297595 297595 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1324 SAMTools SNP 298002 298002 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1324 SAMTools SNP 298137 298137 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold1324 SAMTools SNP 298935 298935 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1324 SAMTools SNP 331880 331880 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1324 SAMTools SNP 331882 331882 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1324 SAMTools SNP 332212 332212 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 336176 336176 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 348021 348021 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 348175 348175 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C103:39 scaffold1324 SAMTools SNP 348413 348413 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1324 SAMTools SNP 354235 354235 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1324 SAMTools SNP 354370 354370 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1324 SAMTools SNP 357517 357517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1324 SAMTools SNP 358861 358861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1324 SAMTools SNP 358884 358884 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C228:58 scaffold1324 SAMTools SNP 358888 358888 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1324 SAMTools SNP 359579 359579 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1324 SAMTools SNP 361949 361949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C28%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1324 SAMTools SNP 362764 362764 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold1324 SAMTools SNP 372967 372967 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 372975 372975 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 384060 384060 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1324 SAMTools SNP 388732 388732 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C60%2C0:99 scaffold1324 SAMTools SNP 389763 389763 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1324 SAMTools SNP 392187 392187 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1324 SAMTools SNP 393764 393764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C23%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1324 SAMTools SNP 393818 393818 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1324 SAMTools SNP 394100 394100 30.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold1324 SAMTools SNP 459603 459603 24.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C18%2C0:32 scaffold1324 SAMTools SNP 459903 459903 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1324 SAMTools SNP 495071 495071 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1324 SAMTools SNP 495141 495141 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1324 SAMTools SNP 495197 495197 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1324 SAMTools SNP 497209 497209 38.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1324 SAMTools SNP 497721 497721 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold1324 SAMTools SNP 500215 500215 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1324 SAMTools SNP 500493 500493 10.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1324 SAMTools SNP 500512 500512 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1324 SAMTools SNP 504877 504877 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C48%2C0:93 scaffold1324 SAMTools SNP 505003 505003 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 505045 505045 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C46%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C175%2C0:99 scaffold1324 SAMTools SNP 505367 505367 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C42%2C0:81 scaffold1324 SAMTools SNP 505583 505583 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C72%2C0:99 scaffold1324 SAMTools SNP 506252 506252 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1324 SAMTools SNP 506359 506359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C13%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1324 SAMTools SNP 506383 506383 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1324 SAMTools SNP 506702 506702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C35%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1324 SAMTools SNP 507628 507628 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1324 SAMTools SNP 508574 508574 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1324 SAMTools SNP 508598 508598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1324 SAMTools SNP 508992 508992 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C33%2C0:63 scaffold1324 SAMTools SNP 509181 509181 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 509951 509951 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1324 SAMTools SNP 510331 510331 71 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0%2C88%2C7%2C85:63 scaffold1324 SAMTools SNP 511426 511426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1324 SAMTools SNP 511430 511430 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1324 SAMTools SNP 511471 511471 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1324 SAMTools SNP 511790 511790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1324 SAMTools SNP 512316 512316 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1324 SAMTools SNP 512454 512454 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 513245 513245 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1324 SAMTools SNP 513248 513248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1324 SAMTools SNP 513772 513772 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold1324 SAMTools SNP 514624 514624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1324 SAMTools SNP 515031 515031 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1324 SAMTools SNP 515052 515052 186 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C39%2C0%2C193%2C2%2C190:75 scaffold1324 SAMTools SNP 515637 515637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1324 SAMTools SNP 515787 515787 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C12%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1324 SAMTools SNP 517514 517514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1324 SAMTools SNP 518243 518243 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1324 SAMTools SNP 518301 518301 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1324 SAMTools SNP 518308 518308 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C7%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1324 SAMTools SNP 523812 523812 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 526204 526204 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1324 SAMTools SNP 527492 527492 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 527531 527531 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1324 SAMTools SNP 541597 541597 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C33%2C0:63 scaffold1324 SAMTools SNP 541648 541648 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C33%2C0:61 scaffold1327 SAMTools SNP 16201 16201 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1327 SAMTools SNP 81906 81906 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1327 SAMTools SNP 82021 82021 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1327 SAMTools SNP 82244 82244 60 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C21%2C89%2C0%2C86:16 scaffold1327 SAMTools SNP 82265 82265 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C140:99 scaffold1327 SAMTools SNP 82720 82720 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1327 SAMTools SNP 82736 82736 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1327 SAMTools SNP 82764 82764 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1327 SAMTools SNP 82770 82770 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1327 SAMTools SNP 82835 82835 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1327 SAMTools SNP 82841 82841 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1327 SAMTools SNP 83077 83077 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1327 SAMTools SNP 83142 83142 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C0.17%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1327 SAMTools SNP 83162 83162 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C43%3BMQ%3D49%3BFQ%3D-48%3BPV4%3D1%2C0.32%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1327 SAMTools SNP 83170 83170 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C0%2C7%3BMQ%3D49%3BFQ%3D47%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1327 SAMTools SNP 83362 83362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C53%2C30%3BMQ%3D49%3BFQ%3D-230%3BPV4%3D1%2C0.24%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C203%2C0:99 scaffold1327 SAMTools SNP 83489 83489 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C27%2C0:51 scaffold1327 SAMTools SNP 83494 83494 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 84965 84965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1327 SAMTools SNP 85423 85423 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1327 SAMTools SNP 87389 87389 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1327 SAMTools SNP 87745 87745 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0018%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1327 SAMTools SNP 88083 88083 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold1327 SAMTools SNP 88567 88567 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 88579 88579 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0153%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.0054%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C127:30 scaffold1327 SAMTools SNP 89835 89835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1327 SAMTools SNP 90105 90105 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C212:99 scaffold1327 SAMTools SNP 90135 90135 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C243:99 scaffold1327 SAMTools SNP 90709 90709 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1327 SAMTools SNP 91127 91127 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold1327 SAMTools SNP 91130 91130 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1327 SAMTools SNP 91139 91139 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 91323 91323 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1327 SAMTools SNP 91335 91335 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1327 SAMTools SNP 91973 91973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1327 SAMTools SNP 92003 92003 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.25%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1327 SAMTools SNP 92004 92004 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1327 SAMTools SNP 92450 92450 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1327 SAMTools SNP 92455 92455 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1327 SAMTools SNP 95172 95172 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1327 SAMTools SNP 95479 95479 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold1327 SAMTools SNP 95488 95488 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1327 SAMTools SNP 95775 95775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1327 SAMTools SNP 95796 95796 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C63:66 scaffold1327 SAMTools SNP 96682 96682 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1327 SAMTools SNP 97068 97068 26.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1327 SAMTools SNP 97318 97318 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1327 SAMTools SNP 99708 99708 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1327 SAMTools SNP 101666 101666 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 101722 101722 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1327 SAMTools SNP 102212 102212 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1327 SAMTools SNP 102757 102757 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1327 SAMTools SNP 102761 102761 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1327 SAMTools SNP 102800 102800 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C35:38 scaffold1327 SAMTools SNP 103080 103080 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1327 SAMTools SNP 103093 103093 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold1327 SAMTools SNP 103177 103177 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C137:99 scaffold1327 SAMTools SNP 103514 103514 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C38%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.00021%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 103542 103542 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C47%2C2%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1327 SAMTools SNP 103760 103760 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C248:62 scaffold1327 SAMTools SNP 104605 104605 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 105483 105483 78.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold1327 SAMTools SNP 106068 106068 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C238:99 scaffold1327 SAMTools SNP 106089 106089 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C0.45%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C200:99 scaffold1327 SAMTools SNP 106103 106103 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1327 SAMTools SNP 106181 106181 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1327 SAMTools SNP 107265 107265 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1327 SAMTools SNP 107527 107527 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 107534 107534 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 107552 107552 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 108041 108041 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1327 SAMTools SNP 108247 108247 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1327 SAMTools SNP 108294 108294 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1327 SAMTools SNP 108588 108588 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1327 SAMTools SNP 108609 108609 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 108992 108992 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 120677 120677 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C243%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1327 SAMTools SNP 121019 121019 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 121046 121046 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.45%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 122160 122160 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.002%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1327 SAMTools SNP 122746 122746 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C103%2C5%2C11%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1327 SAMTools SNP 122806 122806 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.46%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 123216 123216 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 123692 123692 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.019%2C0.23%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1327 SAMTools SNP 125449 125449 23.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold1327 SAMTools SNP 125827 125827 39.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1327 SAMTools SNP 125973 125973 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1327 SAMTools SNP 125989 125989 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1327 SAMTools SNP 127566 127566 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 136091 136091 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1327 SAMTools SNP 136173 136173 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1327 SAMTools SNP 136882 136882 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C87%2C0:99 scaffold1327 SAMTools SNP 142120 142120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 143474 143474 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1327 SAMTools SNP 143489 143489 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C20%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1327 SAMTools SNP 144248 144248 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C1%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.36%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1327 SAMTools SNP 144255 144255 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C15%2C23%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold1327 SAMTools SNP 144264 144264 203 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C11%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.18%2C0.12%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1327 SAMTools SNP 144502 144502 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C18%2C23%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.036%2C5.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1327 SAMTools SNP 144604 144604 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C5%2C55%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.31%2C2.9e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C193:99 scaffold1327 SAMTools SNP 144682 144682 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1327 SAMTools SNP 144862 144862 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0062%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C95:57 scaffold1327 SAMTools SNP 144988 144988 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C4%2C38%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.12%2C9.5e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1327 SAMTools SNP 145525 145525 48.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1327 SAMTools SNP 145711 145711 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1327 SAMTools SNP 145826 145826 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C33%2C8%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C1.3e-15%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 145863 145863 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C118%2C29%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 146132 146132 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C50%2C22%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 146133 146133 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C49%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 146809 146809 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C50%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 146863 146863 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C17%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 149075 149075 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D79.6%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C107:99 scaffold1327 SAMTools SNP 149366 149366 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold1327 SAMTools SNP 195603 195603 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 195624 195624 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 200699 200699 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C78%2C0:99 scaffold1327 SAMTools SNP 201214 201214 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C16%2C20%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0017%2C2.6e-14%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1327 SAMTools SNP 201302 201302 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1327 SAMTools SNP 201329 201329 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C3%2C10%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D1%2C1.9e-15%2C0.065%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1327 SAMTools SNP 201906 201906 34.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1327 SAMTools SNP 202663 202663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1327 SAMTools SNP 203020 203020 43.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold1327 SAMTools SNP 204138 204138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1327 SAMTools SNP 204183 204183 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1327 SAMTools SNP 204860 204860 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 204894 204894 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 205651 205651 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.57%2C2e-05%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1327 SAMTools SNP 207198 207198 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1327 SAMTools SNP 207504 207504 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.58%2C0.083%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1327 SAMTools SNP 207534 207534 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1327 SAMTools SNP 207540 207540 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold1327 SAMTools SNP 207762 207762 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1327 SAMTools SNP 207778 207778 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1327 SAMTools SNP 211631 211631 62.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold1327 SAMTools SNP 246151 246151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1327 SAMTools SNP 247597 247597 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1327 SAMTools SNP 247772 247772 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1327 SAMTools SNP 247820 247820 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1327 SAMTools SNP 247847 247847 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1327 SAMTools SNP 257567 257567 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1327 SAMTools SNP 258093 258093 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 260268 260268 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1327 SAMTools SNP 263645 263645 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 264465 264465 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1327 SAMTools SNP 264609 264609 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1327 SAMTools SNP 265264 265264 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1327 SAMTools SNP 265335 265335 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1327 SAMTools SNP 265848 265848 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold1327 SAMTools SNP 265901 265901 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1327 SAMTools SNP 266067 266067 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 270039 270039 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D44%3BFQ%3D52%3BPV4%3D1%2C0.083%2C1%2C6.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C179:82 scaffold1327 SAMTools SNP 270225 270225 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C33%2C0:63 scaffold1327 SAMTools SNP 270336 270336 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1327 SAMTools SNP 270364 270364 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1327 SAMTools SNP 272838 272838 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C129%2C0:99 scaffold1327 SAMTools SNP 276184 276184 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C124:43 scaffold1327 SAMTools SNP 276243 276243 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1327 SAMTools SNP 276260 276260 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1327 SAMTools SNP 276264 276264 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1327 SAMTools SNP 276268 276268 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1327 SAMTools SNP 276655 276655 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0001%2C0.018%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C227:99 scaffold1327 SAMTools SNP 276817 276817 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1327 SAMTools SNP 276819 276819 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1327 SAMTools SNP 291211 291211 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1327 SAMTools SNP 299644 299644 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1327 SAMTools SNP 376198 376198 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1327 SAMTools SNP 377745 377745 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C40%2C37%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D0.24%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold1327 SAMTools SNP 377868 377868 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1327 SAMTools SNP 381177 381177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1327 SAMTools SNP 381697 381697 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C0%2C9%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.33%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1327 SAMTools SNP 382202 382202 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1327 SAMTools SNP 382453 382453 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1.2e-05%2C1.9e-09%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1327 SAMTools SNP 382637 382637 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0024%2C0.081%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1327 SAMTools SNP 382643 382643 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C4%2C5%3BMQ%3D49%3BFQ%3D222%3BPV4%3D0.0097%2C0.074%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1327 SAMTools SNP 382693 382693 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1327 SAMTools SNP 383107 383107 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C0%2C13%3BMQ%3D48%3BFQ%3D60%3BPV4%3D0.002%2C1.8e-11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1327 SAMTools SNP 386537 386537 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C4%2C20%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1.3e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1327 SAMTools SNP 389757 389757 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1327 SAMTools SNP 389858 389858 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C57%2C0:99 scaffold1327 SAMTools SNP 392109 392109 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1328 SAMTools SNP 13641 13641 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1328 SAMTools SNP 13692 13692 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1328 SAMTools SNP 36726 36726 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1328 SAMTools SNP 41289 41289 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1328 SAMTools SNP 90464 90464 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C215:94 scaffold1328 SAMTools SNP 90470 90470 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold1328 SAMTools SNP 90502 90502 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1328 SAMTools SNP 90518 90518 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.023%2C1.4e-07%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1328 SAMTools SNP 90980 90980 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.63%3BPV4%3D0.4%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C35:38 scaffold1328 SAMTools SNP 91241 91241 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1328 SAMTools SNP 91863 91863 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.21%2C1e-15%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C252:30 scaffold1328 SAMTools SNP 92485 92485 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1328 SAMTools SNP 92493 92493 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1328 SAMTools SNP 116529 116529 30.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1328 SAMTools SNP 118082 118082 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1328 SAMTools SNP 118423 118423 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1328 SAMTools SNP 141234 141234 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1328 SAMTools SNP 259546 259546 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C233:50 scaffold1328 SAMTools SNP 260559 260559 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1328 SAMTools SNP 262224 262224 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold1328 SAMTools SNP 262438 262438 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1328 SAMTools SNP 285353 285353 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C45%2C0:87 scaffold1328 SAMTools SNP 287119 287119 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1328 SAMTools SNP 324095 324095 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1328 SAMTools SNP 326119 326119 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold1329 SAMTools SNP 7683 7683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 7692 7692 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 8009 8009 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 18855 18855 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D32%3BFQ%3D-30%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C3%2C0:6 scaffold1329 SAMTools SNP 18868 18868 26.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C0.034%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C5%2C0:9 scaffold1329 SAMTools SNP 29088 29088 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 29118 29118 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1329 SAMTools SNP 40459 40459 52.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1329 SAMTools SNP 40520 40520 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 80191 80191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C13%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1329 SAMTools SNP 80250 80250 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1329 SAMTools SNP 80272 80272 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C81%2C0:99 scaffold1329 SAMTools SNP 95093 95093 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1329 SAMTools SNP 96110 96110 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1329 SAMTools SNP 109115 109115 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1329 SAMTools SNP 115172 115172 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1329 SAMTools SNP 123928 123928 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1329 SAMTools SNP 123949 123949 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1329 SAMTools SNP 125213 125213 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1329 SAMTools SNP 130315 130315 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.35%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1329 SAMTools SNP 130493 130493 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 146084 146084 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C57%2C0:99 scaffold1329 SAMTools SNP 149136 149136 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1329 SAMTools SNP 165528 165528 28.8 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C15%2C59%2C0%2C56:10 scaffold1329 SAMTools SNP 169443 169443 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 174363 174363 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1329 SAMTools SNP 176708 176708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1329 SAMTools SNP 177692 177692 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1329 SAMTools SNP 178167 178167 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C0.0064%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1329 SAMTools SNP 179274 179274 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1329 SAMTools SNP 179277 179277 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1329 SAMTools SNP 179328 179328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1329 SAMTools SNP 179433 179433 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D34%3BPV4%3D9.3e-05%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1329 SAMTools SNP 199749 199749 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1329 SAMTools SNP 215371 215371 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 223476 223476 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold1329 SAMTools SNP 223585 223585 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 232059 232059 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1329 SAMTools SNP 235146 235146 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 235178 235178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 236457 236457 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1329 SAMTools SNP 236904 236904 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0128%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C196:31 scaffold1329 SAMTools SNP 237186 237186 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1329 SAMTools SNP 237817 237817 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C84:87 scaffold1329 SAMTools SNP 238079 238079 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1329 SAMTools SNP 238306 238306 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1329 SAMTools SNP 238343 238343 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1329 SAMTools SNP 238357 238357 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1329 SAMTools SNP 238900 238900 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1329 SAMTools SNP 238957 238957 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1329 SAMTools SNP 241046 241046 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1329 SAMTools SNP 241089 241089 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C54%2C0:99 scaffold1329 SAMTools SNP 241190 241190 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1329 SAMTools SNP 241494 241494 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1329 SAMTools SNP 241544 241544 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1329 SAMTools SNP 241635 241635 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C39%2C0:75 scaffold1329 SAMTools SNP 241875 241875 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 242524 242524 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 247231 247231 52.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1329 SAMTools SNP 247777 247777 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1329 SAMTools SNP 249544 249544 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1329 SAMTools SNP 272539 272539 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C48%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1329 SAMTools SNP 273317 273317 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C93%2C0:99 scaffold1329 SAMTools SNP 274774 274774 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C154%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold1329 SAMTools SNP 276861 276861 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1329 SAMTools SNP 278335 278335 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0048%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1329 SAMTools SNP 278369 278369 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C214:99 scaffold1329 SAMTools SNP 278417 278417 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1329 SAMTools SNP 278459 278459 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold1329 SAMTools SNP 280038 280038 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C10%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.59%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold1329 SAMTools SNP 280100 280100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.057%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1329 SAMTools SNP 280110 280110 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C124:99 scaffold1329 SAMTools SNP 281565 281565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1329 SAMTools SNP 284024 284024 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C6%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1329 SAMTools SNP 284063 284063 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C4%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.043%2C0.14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1329 SAMTools SNP 284526 284526 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1329 SAMTools SNP 284798 284798 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D48%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C251:99 scaffold1329 SAMTools SNP 285944 285944 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1329 SAMTools SNP 313967 313967 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1329 SAMTools SNP 313982 313982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1329 SAMTools SNP 318352 318352 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C45%2C0:87 scaffold1329 SAMTools SNP 319030 319030 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D4.1e-05%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold1329 SAMTools SNP 319033 319033 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D4.1e-05%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold1329 SAMTools SNP 319093 319093 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C8%2C86%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1329 SAMTools SNP 321899 321899 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C48%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1329 SAMTools SNP 330907 330907 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1329 SAMTools SNP 332828 332828 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 333427 333427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 335096 335096 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1329 SAMTools SNP 340643 340643 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1329 SAMTools SNP 344250 344250 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 387028 387028 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 387071 387071 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1329 SAMTools SNP 413573 413573 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1329 SAMTools SNP 413608 413608 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1329 SAMTools SNP 413869 413869 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1329 SAMTools SNP 413888 413888 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1329 SAMTools SNP 413920 413920 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.49%2C0.039%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C232:65 scaffold1329 SAMTools SNP 414296 414296 80 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-52;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C142%2C246%2C0%2C234:47 scaffold1329 SAMTools SNP 421000 421000 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1329 SAMTools SNP 421477 421477 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 421504 421504 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1329 SAMTools SNP 421881 421881 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1329 SAMTools SNP 424832 424832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1329 SAMTools SNP 425396 425396 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C195:66 scaffold1329 SAMTools SNP 425492 425492 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.21%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C236:99 scaffold1329 SAMTools SNP 425534 425534 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1329 SAMTools SNP 427759 427759 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C23%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.055%2C3.5e-09%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1329 SAMTools SNP 427765 427765 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C14%2C22%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.017%2C1.9e-15%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1329 SAMTools SNP 428582 428582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C56%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1329 SAMTools SNP 428600 428600 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C56%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1329 SAMTools SNP 428906 428906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C7%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1329 SAMTools SNP 429160 429160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C45%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1329 SAMTools SNP 429199 429199 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1329 SAMTools SNP 429301 429301 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1329 SAMTools SNP 429727 429727 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1329 SAMTools SNP 429980 429980 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1329 SAMTools SNP 430523 430523 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold133 SAMTools SNP 24496 24496 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold133 SAMTools SNP 98689 98689 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold133 SAMTools SNP 98811 98811 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold133 SAMTools SNP 99950 99950 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold133 SAMTools SNP 172653 172653 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold133 SAMTools SNP 172677 172677 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D7.64%3BPV4%3D1%2C0.004%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold1330 SAMTools SNP 18222 18222 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1330 SAMTools SNP 18266 18266 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1330 SAMTools SNP 19447 19447 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1330 SAMTools SNP 19605 19605 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1330 SAMTools SNP 19619 19619 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1330 SAMTools SNP 19697 19697 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1330 SAMTools SNP 19897 19897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1330 SAMTools SNP 23759 23759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C40%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C0.32%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold1330 SAMTools SNP 23768 23768 65.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C6%2C0:10 scaffold1330 SAMTools SNP 23792 23792 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.18%2C1.9e-22%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C231:85 scaffold1330 SAMTools SNP 23882 23882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1330 SAMTools SNP 26116 26116 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1330 SAMTools SNP 26266 26266 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.14%2C1.5e-30%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C244:39 scaffold1330 SAMTools SNP 26289 26289 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold1330 SAMTools SNP 27307 27307 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C117%2C0:99 scaffold1330 SAMTools SNP 29941 29941 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1330 SAMTools SNP 35874 35874 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1330 SAMTools SNP 35875 35875 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1330 SAMTools SNP 35917 35917 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1330 SAMTools SNP 35938 35938 57.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold1330 SAMTools SNP 37663 37663 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1330 SAMTools SNP 38772 38772 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1330 SAMTools SNP 38791 38791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C18%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.6%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1330 SAMTools SNP 39483 39483 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1330 SAMTools SNP 39546 39546 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1330 SAMTools SNP 39567 39567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1330 SAMTools SNP 40162 40162 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1330 SAMTools SNP 40355 40355 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1330 SAMTools SNP 40366 40366 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1330 SAMTools SNP 40387 40387 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1330 SAMTools SNP 40715 40715 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C16%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.33%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1330 SAMTools SNP 40928 40928 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1330 SAMTools SNP 40931 40931 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1330 SAMTools SNP 41097 41097 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1330 SAMTools SNP 41100 41100 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1330 SAMTools SNP 41114 41114 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1330 SAMTools SNP 42490 42490 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1330 SAMTools SNP 42527 42527 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1330 SAMTools SNP 45538 45538 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1330 SAMTools SNP 46405 46405 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.091%2C0.015%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C201:90 scaffold1330 SAMTools SNP 46761 46761 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C0.098%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C235:99 scaffold1330 SAMTools SNP 47112 47112 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D5.86%3BPV4%3D1%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C37:33 scaffold1330 SAMTools SNP 47254 47254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1330 SAMTools SNP 47276 47276 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1330 SAMTools SNP 47856 47856 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1330 SAMTools SNP 48362 48362 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C7%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.002%2C9.7e-29%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1330 SAMTools SNP 48594 48594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C2%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1330 SAMTools SNP 50902 50902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1330 SAMTools SNP 52619 52619 17.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1330 SAMTools SNP 52881 52881 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1330 SAMTools SNP 53566 53566 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1330 SAMTools SNP 53587 53587 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1330 SAMTools SNP 54418 54418 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1330 SAMTools SNP 54424 54424 186 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold1330 SAMTools SNP 54801 54801 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.51%2C0.0038%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C175:99 scaffold1330 SAMTools SNP 54822 54822 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1330 SAMTools SNP 54846 54846 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold1330 SAMTools SNP 56997 56997 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D2.4e-09%2C0.14%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1330 SAMTools SNP 57046 57046 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C17%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D2.1e-06%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1330 SAMTools SNP 57108 57108 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C60%2C0:99 scaffold1330 SAMTools SNP 57130 57130 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C151%2C0:99 scaffold1330 SAMTools SNP 57165 57165 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D38.3%3BPV4%3D0.026%2C6.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C67:68 scaffold1330 SAMTools SNP 67615 67615 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1330 SAMTools SNP 67616 67616 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1330 SAMTools SNP 67684 67684 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1330 SAMTools SNP 67691 67691 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1330 SAMTools SNP 68061 68061 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1330 SAMTools SNP 68096 68096 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.58%2C0.33%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1330 SAMTools SNP 68826 68826 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1330 SAMTools SNP 68907 68907 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1330 SAMTools SNP 69249 69249 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1330 SAMTools SNP 158857 158857 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1330 SAMTools SNP 186085 186085 41.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1330 SAMTools SNP 186574 186574 6.19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C2.1e-29%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C61%2C0:48 scaffold1330 SAMTools SNP 186676 186676 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1330 SAMTools SNP 186724 186724 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C41%2C60%2C50%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.033%2C1.9e-161%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1330 SAMTools SNP 187078 187078 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C67%2C17%2C39%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.49%2C5.1e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1330 SAMTools SNP 188714 188714 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold1330 SAMTools SNP 190830 190830 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1330 SAMTools SNP 191176 191176 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C229:61 scaffold1330 SAMTools SNP 194556 194556 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1330 SAMTools SNP 197490 197490 97.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold1330 SAMTools SNP 201763 201763 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold1333 SAMTools SNP 443 443 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 530 530 89.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold1333 SAMTools SNP 804 804 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1333 SAMTools SNP 808 808 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1333 SAMTools SNP 10809 10809 19.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1333 SAMTools SNP 11940 11940 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1333 SAMTools SNP 52912 52912 26.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1333 SAMTools SNP 53578 53578 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold1333 SAMTools SNP 54131 54131 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold1333 SAMTools SNP 54512 54512 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C16%2C22%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.36%2C7.6e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1333 SAMTools SNP 55745 55745 68.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold1333 SAMTools SNP 56189 56189 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C2.1e-14%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C137:61 scaffold1333 SAMTools SNP 56548 56548 103 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C45%2C0:87 scaffold1333 SAMTools SNP 56790 56790 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C48%2C0:93 scaffold1333 SAMTools SNP 57453 57453 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 60852 60852 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1333 SAMTools SNP 62159 62159 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.29%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold1333 SAMTools SNP 62191 62191 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1333 SAMTools SNP 62228 62228 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.031%2C0.49%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1333 SAMTools SNP 64400 64400 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1333 SAMTools SNP 65602 65602 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 66066 66066 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 66393 66393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C30%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.5%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 66411 66411 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C73%2C23%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 66958 66958 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C24%2C0%2C38%3BMQ%3D50%3BFQ%3D177%3BPV4%3D9.4e-15%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1333 SAMTools SNP 67426 67426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 67538 67538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D902%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C740%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 67621 67621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C126%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 69426 69426 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1333 SAMTools SNP 70889 70889 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1333 SAMTools SNP 70895 70895 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1333 SAMTools SNP 71321 71321 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1333 SAMTools SNP 71351 71351 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1333 SAMTools SNP 71922 71922 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1333 SAMTools SNP 72191 72191 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1333 SAMTools SNP 72224 72224 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1333 SAMTools SNP 72652 72652 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1333 SAMTools SNP 73583 73583 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1333 SAMTools SNP 73886 73886 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1333 SAMTools SNP 73923 73923 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1333 SAMTools SNP 75181 75181 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1333 SAMTools SNP 75819 75819 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.0075%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C182:99 scaffold1333 SAMTools SNP 79640 79640 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D423%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C94%2C107%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-190%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 79907 79907 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1328%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C2%2C1014%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0072%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 81421 81421 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C82%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C247%2C0:99 scaffold1333 SAMTools SNP 85585 85585 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C21%2C100%2C14%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.86%2C9.1e-176%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1333 SAMTools SNP 85908 85908 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1333 SAMTools SNP 85954 85954 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1333 SAMTools SNP 86019 86019 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C27%2C0:51 scaffold1333 SAMTools SNP 86906 86906 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C52%2C13%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1.6e-08%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1333 SAMTools SNP 86982 86982 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C24%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C203:54 scaffold1333 SAMTools SNP 88001 88001 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C77:37 scaffold1333 SAMTools SNP 88265 88265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C47%2C13%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 88803 88803 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C27%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 88833 88833 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C56%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 90803 90803 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C66%2C209%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 90864 90864 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 98866 98866 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C68%2C0%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 103044 103044 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C131%2C28%2C122%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.072%2C5.4e-150%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1333 SAMTools SNP 103194 103194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1333 SAMTools SNP 103266 103266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C109%2C32%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104252 104252 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C36%2C18%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104282 104282 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C47%2C36%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104513 104513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C81%2C58%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.48%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104570 104570 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C59%2C62%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.42%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104582 104582 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C39%2C82%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 104875 104875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1333 SAMTools SNP 104887 104887 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C0%2C14%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1333 SAMTools SNP 105073 105073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1333 SAMTools SNP 110660 110660 12.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1333 SAMTools SNP 112549 112549 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold1333 SAMTools SNP 114615 114615 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.13%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C145:41 scaffold1333 SAMTools SNP 117782 117782 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1333 SAMTools SNP 118406 118406 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1333 SAMTools SNP 118901 118901 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 119055 119055 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1333 SAMTools SNP 130289 130289 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1333 SAMTools SNP 133677 133677 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1333 SAMTools SNP 136711 136711 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 137886 137886 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1333 SAMTools SNP 138355 138355 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.61%2C0.1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1333 SAMTools SNP 138406 138406 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1333 SAMTools SNP 138986 138986 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C1%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1333 SAMTools SNP 139271 139271 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1333 SAMTools SNP 139364 139364 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C67:70 scaffold1333 SAMTools SNP 140485 140485 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 140542 140542 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1333 SAMTools SNP 141346 141346 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1333 SAMTools SNP 142550 142550 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1333 SAMTools SNP 142559 142559 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1333 SAMTools SNP 142597 142597 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1333 SAMTools SNP 143167 143167 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0031%2C7.3e-05%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1333 SAMTools SNP 143559 143559 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 143899 143899 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C226:99 scaffold1333 SAMTools SNP 143957 143957 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 144197 144197 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1333 SAMTools SNP 144212 144212 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C30%2C0:57 scaffold1333 SAMTools SNP 145340 145340 227 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold1333 SAMTools SNP 146327 146327 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1333 SAMTools SNP 147176 147176 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 147192 147192 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 148089 148089 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1333 SAMTools SNP 148709 148709 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1333 SAMTools SNP 148715 148715 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1333 SAMTools SNP 150073 150073 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1333 SAMTools SNP 150371 150371 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1333 SAMTools SNP 150407 150407 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1333 SAMTools SNP 150631 150631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1333 SAMTools SNP 151093 151093 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1333 SAMTools SNP 151546 151546 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1333 SAMTools SNP 151697 151697 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.29%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C104:99 scaffold1333 SAMTools SNP 152118 152118 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 152519 152519 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1333 SAMTools SNP 152549 152549 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C187:69 scaffold1333 SAMTools SNP 152621 152621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1333 SAMTools SNP 152630 152630 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1333 SAMTools SNP 153356 153356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1333 SAMTools SNP 153365 153365 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C27%3BMQ%3D50%3BFQ%3D-96%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1333 SAMTools SNP 153479 153479 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1333 SAMTools SNP 153488 153488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1333 SAMTools SNP 156976 156976 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 156991 156991 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1333 SAMTools SNP 157246 157246 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.24%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold1333 SAMTools SNP 157324 157324 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.00014%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1333 SAMTools SNP 157666 157666 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1333 SAMTools SNP 175009 175009 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1333 SAMTools SNP 179133 179133 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C7%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.00016%2C0.00038%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1333 SAMTools SNP 179149 179149 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1333 SAMTools SNP 179732 179732 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1333 SAMTools SNP 179777 179777 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1333 SAMTools SNP 180466 180466 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1333 SAMTools SNP 180553 180553 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1333 SAMTools SNP 181384 181384 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 185336 185336 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 185343 185343 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1333 SAMTools SNP 185995 185995 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1333 SAMTools SNP 186022 186022 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold1333 SAMTools SNP 187030 187030 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 187609 187609 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1333 SAMTools SNP 197100 197100 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 202082 202082 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 204693 204693 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1333 SAMTools SNP 204698 204698 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1333 SAMTools SNP 204898 204898 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1333 SAMTools SNP 205109 205109 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 205135 205135 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1333 SAMTools SNP 210967 210967 7.18 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C15%2C0:18 scaffold1333 SAMTools SNP 234002 234002 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1333 SAMTools SNP 234087 234087 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold1333 SAMTools SNP 234117 234117 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1333 SAMTools SNP 234294 234294 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1333 SAMTools SNP 234324 234324 74.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1333 SAMTools SNP 235888 235888 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1333 SAMTools SNP 237082 237082 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1333 SAMTools SNP 237740 237740 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1333 SAMTools SNP 237742 237742 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1333 SAMTools SNP 237759 237759 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1333 SAMTools SNP 237880 237880 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1334 SAMTools SNP 7396 7396 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1334 SAMTools SNP 10469 10469 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1334 SAMTools SNP 59885 59885 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1334 SAMTools SNP 60273 60273 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1337 SAMTools SNP 67093 67093 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1337 SAMTools SNP 67564 67564 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 69144 69144 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 70097 70097 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold1337 SAMTools SNP 70102 70102 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 70139 70139 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1337 SAMTools SNP 70936 70936 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.084%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1337 SAMTools SNP 71000 71000 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.21%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1337 SAMTools SNP 71351 71351 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1337 SAMTools SNP 71378 71378 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1337 SAMTools SNP 71806 71806 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1337 SAMTools SNP 72019 72019 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1337 SAMTools SNP 72035 72035 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 72551 72551 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1337 SAMTools SNP 72596 72596 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 72932 72932 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 73007 73007 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold1337 SAMTools SNP 73073 73073 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1337 SAMTools SNP 73139 73139 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1337 SAMTools SNP 73837 73837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1337 SAMTools SNP 74642 74642 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.16%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1337 SAMTools SNP 74696 74696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1337 SAMTools SNP 76039 76039 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C13%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.051%2C1%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1337 SAMTools SNP 76446 76446 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C6.6e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C239:79 scaffold1337 SAMTools SNP 76740 76740 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1337 SAMTools SNP 78622 78622 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1337 SAMTools SNP 79318 79318 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C3.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1337 SAMTools SNP 79667 79667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1337 SAMTools SNP 79681 79681 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1337 SAMTools SNP 80110 80110 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1337 SAMTools SNP 80631 80631 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C10%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1337 SAMTools SNP 86426 86426 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1337 SAMTools SNP 86993 86993 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1337 SAMTools SNP 87016 87016 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1337 SAMTools SNP 87966 87966 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C242:99 scaffold1337 SAMTools SNP 88062 88062 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1337 SAMTools SNP 88072 88072 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1337 SAMTools SNP 88532 88532 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1337 SAMTools SNP 88557 88557 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1337 SAMTools SNP 89256 89256 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.00026%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold1337 SAMTools SNP 93438 93438 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 112913 112913 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.52%2C1.5e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C151:49 scaffold1337 SAMTools SNP 112969 112969 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1337 SAMTools SNP 112992 112992 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.14%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1337 SAMTools SNP 116319 116319 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1337 SAMTools SNP 119430 119430 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.048%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1337 SAMTools SNP 119478 119478 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold1337 SAMTools SNP 124615 124615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1337 SAMTools SNP 126642 126642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1337 SAMTools SNP 127468 127468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1337 SAMTools SNP 129487 129487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.19%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1337 SAMTools SNP 129535 129535 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1337 SAMTools SNP 130298 130298 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1337 SAMTools SNP 132356 132356 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1337 SAMTools SNP 133315 133315 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1337 SAMTools SNP 133346 133346 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1337 SAMTools SNP 133853 133853 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1337 SAMTools SNP 135369 135369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1337 SAMTools SNP 140793 140793 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C27%2C0:46 scaffold1337 SAMTools SNP 143679 143679 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1337 SAMTools SNP 143774 143774 19.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold1337 SAMTools SNP 145468 145468 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1337 SAMTools SNP 145521 145521 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 145529 145529 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold1337 SAMTools SNP 145831 145831 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1337 SAMTools SNP 146443 146443 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1337 SAMTools SNP 147095 147095 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1337 SAMTools SNP 147651 147651 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1337 SAMTools SNP 147661 147661 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold1337 SAMTools SNP 148157 148157 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 148181 148181 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1337 SAMTools SNP 149277 149277 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 150156 150156 19.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1337 SAMTools SNP 151024 151024 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C42%2C0:81 scaffold1337 SAMTools SNP 154378 154378 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1337 SAMTools SNP 154396 154396 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1337 SAMTools SNP 156464 156464 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1337 SAMTools SNP 156510 156510 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1337 SAMTools SNP 159166 159166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 161865 161865 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 164679 164679 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1337 SAMTools SNP 165452 165452 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1337 SAMTools SNP 165493 165493 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1337 SAMTools SNP 171261 171261 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1337 SAMTools SNP 171318 171318 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1337 SAMTools SNP 171559 171559 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 171566 171566 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 172166 172166 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 173239 173239 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1337 SAMTools SNP 173435 173435 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1337 SAMTools SNP 173486 173486 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1337 SAMTools SNP 173492 173492 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1337 SAMTools SNP 173960 173960 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1337 SAMTools SNP 173984 173984 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1337 SAMTools SNP 174500 174500 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold1337 SAMTools SNP 174527 174527 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1337 SAMTools SNP 175183 175183 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1337 SAMTools SNP 175222 175222 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1337 SAMTools SNP 175384 175384 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C15%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.54%2C7.2e-27%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1337 SAMTools SNP 179604 179604 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1337 SAMTools SNP 179924 179924 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1337 SAMTools SNP 181482 181482 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1337 SAMTools SNP 181594 181594 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 184138 184138 52.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1337 SAMTools SNP 184744 184744 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1337 SAMTools SNP 185928 185928 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.011%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1337 SAMTools SNP 185982 185982 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1337 SAMTools SNP 191012 191012 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 192018 192018 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1337 SAMTools SNP 195851 195851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 201206 201206 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 201238 201238 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 216967 216967 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1337 SAMTools SNP 221734 221734 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 222707 222707 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1337 SAMTools SNP 222946 222946 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1337 SAMTools SNP 315143 315143 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1337 SAMTools SNP 330794 330794 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.1%2C0.045%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C110:87 scaffold1337 SAMTools SNP 331465 331465 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1337 SAMTools SNP 331471 331471 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1337 SAMTools SNP 331882 331882 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1337 SAMTools SNP 332208 332208 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C35:38 scaffold1337 SAMTools SNP 340175 340175 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1337 SAMTools SNP 341050 341050 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold1339 SAMTools SNP 35974 35974 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold1339 SAMTools SNP 40094 40094 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1339 SAMTools SNP 40552 40552 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1339 SAMTools SNP 40600 40600 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1339 SAMTools SNP 41851 41851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.14%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1339 SAMTools SNP 41859 41859 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1339 SAMTools SNP 41884 41884 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.61%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1339 SAMTools SNP 42982 42982 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1339 SAMTools SNP 65197 65197 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1339 SAMTools SNP 65230 65230 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1341 SAMTools SNP 2454 2454 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1341 SAMTools SNP 2455 2455 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1341 SAMTools SNP 6097 6097 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1341 SAMTools SNP 7290 7290 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1341 SAMTools SNP 11180 11180 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C127:40 scaffold1341 SAMTools SNP 12511 12511 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1341 SAMTools SNP 12552 12552 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1341 SAMTools SNP 12603 12603 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1341 SAMTools SNP 12920 12920 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1341 SAMTools SNP 13162 13162 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0055%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C249:56 scaffold1341 SAMTools SNP 13280 13280 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1341 SAMTools SNP 15190 15190 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1341 SAMTools SNP 15371 15371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1341 SAMTools SNP 15466 15466 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1341 SAMTools SNP 20138 20138 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1341 SAMTools SNP 20154 20154 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1341 SAMTools SNP 20604 20604 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1341 SAMTools SNP 27424 27424 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C18%2C0:33 scaffold1341 SAMTools SNP 27463 27463 204 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C5%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1341 SAMTools SNP 28125 28125 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1341 SAMTools SNP 28131 28131 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 28655 28655 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 29102 29102 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1341 SAMTools SNP 30022 30022 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C19%2C42%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 35528 35528 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1341 SAMTools SNP 39655 39655 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold1341 SAMTools SNP 39658 39658 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1341 SAMTools SNP 41152 41152 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1341 SAMTools SNP 43412 43412 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.18%2C0.00017%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1341 SAMTools SNP 43677 43677 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.024%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold1341 SAMTools SNP 59397 59397 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.33%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C80:54 scaffold1341 SAMTools SNP 70675 70675 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1341 SAMTools SNP 71053 71053 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1341 SAMTools SNP 71056 71056 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1341 SAMTools SNP 82887 82887 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.12%2C1%2C5.9e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C206:56 scaffold1341 SAMTools SNP 82941 82941 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C22%2C0%2C34%3BMQ%3D50%3BFQ%3D148%3BPV4%3D6.2e-16%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1341 SAMTools SNP 83515 83515 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C42%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1341 SAMTools SNP 83581 83581 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C7%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.012%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1341 SAMTools SNP 83852 83852 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1341 SAMTools SNP 83951 83951 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.64%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1341 SAMTools SNP 84140 84140 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 84146 84146 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 84206 84206 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1341 SAMTools SNP 84260 84260 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.16%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1341 SAMTools SNP 85684 85684 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C59%2C22%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 85829 85829 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1341 SAMTools SNP 85925 85925 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1341 SAMTools SNP 86205 86205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1341 SAMTools SNP 86618 86618 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C60%2C11%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 87020 87020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1341 SAMTools SNP 87140 87140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C8%2C84%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.2%2C4.9e-19%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold1341 SAMTools SNP 87295 87295 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C226:99 scaffold1341 SAMTools SNP 87349 87349 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1341 SAMTools SNP 87610 87610 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1341 SAMTools SNP 87628 87628 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1341 SAMTools SNP 87694 87694 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1341 SAMTools SNP 88582 88582 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1341 SAMTools SNP 88630 88630 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1341 SAMTools SNP 88648 88648 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1341 SAMTools SNP 88965 88965 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 89394 89394 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C4%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1341 SAMTools SNP 89415 89415 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1341 SAMTools SNP 89759 89759 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1341 SAMTools SNP 89805 89805 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1341 SAMTools SNP 89856 89856 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1341 SAMTools SNP 89879 89879 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1341 SAMTools SNP 90103 90103 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1341 SAMTools SNP 90496 90496 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 91104 91104 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C56%2C28%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 91699 91699 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C60%2C32%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1341 SAMTools SNP 105442 105442 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C76%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1341 SAMTools SNP 105465 105465 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C76%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1341 SAMTools SNP 105724 105724 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold1341 SAMTools SNP 106284 106284 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D5.5e-11%2C0.00012%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C229:41 scaffold1341 SAMTools SNP 106820 106820 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C15%3BMQ%3D43%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1341 SAMTools SNP 107241 107241 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1341 SAMTools SNP 107319 107319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1341 SAMTools SNP 107729 107729 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1343 SAMTools SNP 88 88 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1343 SAMTools SNP 56525 56525 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1343 SAMTools SNP 56959 56959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1343 SAMTools SNP 78463 78463 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1343 SAMTools SNP 96793 96793 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1343 SAMTools SNP 109036 109036 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1345 SAMTools SNP 445 445 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1345 SAMTools SNP 511 511 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1345 SAMTools SNP 747 747 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1345 SAMTools SNP 13491 13491 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C66:40 scaffold1345 SAMTools SNP 53836 53836 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1345 SAMTools SNP 53838 53838 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1345 SAMTools SNP 75133 75133 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1345 SAMTools SNP 84250 84250 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1345 SAMTools SNP 84890 84890 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1345 SAMTools SNP 85872 85872 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D46%3BFQ%3D16.1%3BPV4%3D0.47%2C5.7e-05%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C126:46 scaffold1345 SAMTools SNP 169003 169003 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1345 SAMTools SNP 169468 169468 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C42%2C0:79 scaffold1345 SAMTools SNP 197930 197930 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D46%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C120%2C0:99 scaffold1345 SAMTools SNP 198004 198004 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C11%3BMQ%3D46%3BFQ%3D14.2%3BPV4%3D1%2C4.3e-09%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C223:43 scaffold1345 SAMTools SNP 281486 281486 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1345 SAMTools SNP 363746 363746 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C20:23 scaffold1345 SAMTools SNP 363812 363812 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C80:60 scaffold1345 SAMTools SNP 363882 363882 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1345 SAMTools SNP 364018 364018 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.31%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1345 SAMTools SNP 364227 364227 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1345 SAMTools SNP 369405 369405 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1345 SAMTools SNP 370141 370141 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C228:99 scaffold1345 SAMTools SNP 370236 370236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1345 SAMTools SNP 370804 370804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1345 SAMTools SNP 370813 370813 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1345 SAMTools SNP 370860 370860 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.44%2C1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1345 SAMTools SNP 370897 370897 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1345 SAMTools SNP 370948 370948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 371377 371377 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 371390 371390 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 371456 371456 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1345 SAMTools SNP 371667 371667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C10%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1345 SAMTools SNP 371712 371712 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.051%2C0.0031%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1345 SAMTools SNP 371716 371716 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.31%2C0.041%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1345 SAMTools SNP 371728 371728 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C0%2C10%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.58%2C0.00085%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1345 SAMTools SNP 371904 371904 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C45%2C2%2C12%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1345 SAMTools SNP 371916 371916 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C2%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1345 SAMTools SNP 372178 372178 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.13%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C234:99 scaffold1345 SAMTools SNP 372377 372377 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.031%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1345 SAMTools SNP 372381 372381 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C237:99 scaffold1345 SAMTools SNP 372393 372393 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.0026%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1345 SAMTools SNP 374321 374321 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0083%2C6.1e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C190:76 scaffold1345 SAMTools SNP 374358 374358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1345 SAMTools SNP 374403 374403 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.53%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C207:99 scaffold1345 SAMTools SNP 378472 378472 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1345 SAMTools SNP 378505 378505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 380575 380575 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1345 SAMTools SNP 390968 390968 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1345 SAMTools SNP 391013 391013 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1345 SAMTools SNP 391990 391990 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C228:61 scaffold1345 SAMTools SNP 392031 392031 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D32%2C8%2C0%2C13%3BMQ%3D47%3BFQ%3D5.47%3BPV4%3D2.4e-07%2C2.9e-09%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1345 SAMTools SNP 392976 392976 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1345 SAMTools SNP 394189 394189 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0002%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C134:56 scaffold1345 SAMTools SNP 395886 395886 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.17%2C9.5e-09%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1345 SAMTools SNP 395978 395978 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1345 SAMTools SNP 395983 395983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C20%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 397918 397918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C21%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 398639 398639 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1345 SAMTools SNP 398774 398774 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1345 SAMTools SNP 398882 398882 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1345 SAMTools SNP 398904 398904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C58%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1345 SAMTools SNP 410862 410862 32.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1347 SAMTools SNP 19584 19584 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 19624 19624 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 19636 19636 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 19719 19719 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1347 SAMTools SNP 53435 53435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1347 SAMTools SNP 53522 53522 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1347 SAMTools SNP 53714 53714 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold1347 SAMTools SNP 53735 53735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1347 SAMTools SNP 53756 53756 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 53759 53759 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 54847 54847 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1347 SAMTools SNP 56612 56612 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C33%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 56810 56810 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C16%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 57121 57121 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C38%2C0%2C15%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.03%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1347 SAMTools SNP 96803 96803 34.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1347 SAMTools SNP 103794 103794 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1347 SAMTools SNP 103837 103837 73.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold1347 SAMTools SNP 104046 104046 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1347 SAMTools SNP 104903 104903 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 105213 105213 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1347 SAMTools SNP 105560 105560 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C30%2C0:57 scaffold1347 SAMTools SNP 105833 105833 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1347 SAMTools SNP 203279 203279 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1347 SAMTools SNP 207265 207265 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 207291 207291 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 207771 207771 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 209782 209782 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1347 SAMTools SNP 209955 209955 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.25%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1347 SAMTools SNP 210133 210133 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1347 SAMTools SNP 210142 210142 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1347 SAMTools SNP 210154 210154 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.49%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1347 SAMTools SNP 210897 210897 89.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C21%2C0:39 scaffold1347 SAMTools SNP 210902 210902 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C36%2C0:69 scaffold1347 SAMTools SNP 214702 214702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 219580 219580 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1347 SAMTools SNP 237849 237849 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1347 SAMTools SNP 243293 243293 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1347 SAMTools SNP 245590 245590 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1347 SAMTools SNP 247299 247299 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1347 SAMTools SNP 248697 248697 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1347 SAMTools SNP 248700 248700 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1347 SAMTools SNP 249296 249296 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1347 SAMTools SNP 251641 251641 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1347 SAMTools SNP 251737 251737 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1347 SAMTools SNP 252485 252485 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold1347 SAMTools SNP 252663 252663 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1347 SAMTools SNP 255698 255698 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C29:32 scaffold1347 SAMTools SNP 257680 257680 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D77.8%3BPV4%3D1%2C0.074%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C118:99 scaffold1347 SAMTools SNP 263552 263552 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C13%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.1%2C7.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1347 SAMTools SNP 266951 266951 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C29%3BMQ%3D34%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1347 SAMTools SNP 268153 268153 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C2%3BMQ%3D44%3BFQ%3D140%3BPV4%3D0.27%2C0.087%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C237:99 scaffold1347 SAMTools SNP 268294 268294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 268306 268306 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 270552 270552 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1347 SAMTools SNP 270561 270561 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 271141 271141 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1347 SAMTools SNP 271168 271168 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0033%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C237:70 scaffold1347 SAMTools SNP 272526 272526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C17%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 276718 276718 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C23%2C25%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1347 SAMTools SNP 276733 276733 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C26%2C64%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C7.4e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1347 SAMTools SNP 276863 276863 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold1347 SAMTools SNP 285580 285580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C25%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1347 SAMTools SNP 294181 294181 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 294208 294208 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1347 SAMTools SNP 294557 294557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C94%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1347 SAMTools SNP 294573 294573 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C216%2C3%2C38%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.08%2C1%2C1%2C1.4e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1347 SAMTools SNP 294583 294583 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C249%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1347 SAMTools SNP 298380 298380 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1347 SAMTools SNP 300539 300539 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1347 SAMTools SNP 307008 307008 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1347 SAMTools SNP 325329 325329 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C114:34 scaffold1348 SAMTools SNP 1762 1762 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C0%2C5%3BMQ%3D28%3BFQ%3D21%3BPV4%3D0.57%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C149:51 scaffold1348 SAMTools SNP 5598 5598 45.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C53%2C46%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D0.074%2C1.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C22%2C0:41 scaffold1348 SAMTools SNP 6857 6857 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1348 SAMTools SNP 7378 7378 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1348 SAMTools SNP 10226 10226 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C49%2C76%2C24%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 41932 41932 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1348 SAMTools SNP 43292 43292 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C42%2C0:81 scaffold1348 SAMTools SNP 43807 43807 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C8%2C6%3BMQ%3D34%3BFQ%3D80%3BPV4%3D0.19%2C0.44%2C0.051%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C218:99 scaffold1348 SAMTools SNP 44863 44863 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0047%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C213:99 scaffold1348 SAMTools SNP 44968 44968 17.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D30%3BFQ%3D-34%3BPV4%3D0.19%2C9.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C7%2C0:12 scaffold1348 SAMTools SNP 45611 45611 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1348 SAMTools SNP 46171 46171 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1348 SAMTools SNP 46264 46264 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C28%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C3.8e-07%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1348 SAMTools SNP 46912 46912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 52524 52524 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1348 SAMTools SNP 52566 52566 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1348 SAMTools SNP 53790 53790 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1348 SAMTools SNP 53830 53830 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1348 SAMTools SNP 54028 54028 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1348 SAMTools SNP 57015 57015 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1348 SAMTools SNP 60090 60090 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 60117 60117 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 61205 61205 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1348 SAMTools SNP 76295 76295 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1348 SAMTools SNP 82212 82212 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1348 SAMTools SNP 114839 114839 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1348 SAMTools SNP 114886 114886 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.45%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold1348 SAMTools SNP 117612 117612 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C24%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.22%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1348 SAMTools SNP 117663 117663 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.13%2C0.14%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1348 SAMTools SNP 118318 118318 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 118756 118756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C32%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 118757 118757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C27%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 118797 118797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C29%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 126823 126823 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1348 SAMTools SNP 129826 129826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1348 SAMTools SNP 130070 130070 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1348 SAMTools SNP 140228 140228 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D35.5%3BPV4%3D0.028%2C2.3e-07%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C66:65 scaffold1348 SAMTools SNP 149858 149858 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.56%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1348 SAMTools SNP 154950 154950 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C177:42 scaffold1348 SAMTools SNP 155017 155017 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold1348 SAMTools SNP 155655 155655 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1348 SAMTools SNP 155733 155733 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 156235 156235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C8%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1348 SAMTools SNP 156422 156422 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1348 SAMTools SNP 156819 156819 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1348 SAMTools SNP 156824 156824 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 158695 158695 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1348 SAMTools SNP 160126 160126 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1348 SAMTools SNP 160450 160450 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1348 SAMTools SNP 161016 161016 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.4%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C102:60 scaffold1348 SAMTools SNP 162969 162969 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1348 SAMTools SNP 163390 163390 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1348 SAMTools SNP 166806 166806 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1348 SAMTools SNP 167565 167565 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1348 SAMTools SNP 175537 175537 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C5.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C243:99 scaffold1348 SAMTools SNP 175604 175604 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.028%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1348 SAMTools SNP 175613 175613 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C9%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.012%2C0.41%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1348 SAMTools SNP 175724 175724 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C7.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1348 SAMTools SNP 176382 176382 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1348 SAMTools SNP 177153 177153 35.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1348 SAMTools SNP 182224 182224 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1348 SAMTools SNP 188205 188205 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0015%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1348 SAMTools SNP 190799 190799 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1348 SAMTools SNP 191055 191055 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1348 SAMTools SNP 191104 191104 44.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1348 SAMTools SNP 192329 192329 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1348 SAMTools SNP 193107 193107 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1348 SAMTools SNP 193398 193398 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 193428 193428 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1348 SAMTools SNP 194316 194316 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1348 SAMTools SNP 194604 194604 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1348 SAMTools SNP 194884 194884 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1348 SAMTools SNP 194963 194963 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1348 SAMTools SNP 195794 195794 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1348 SAMTools SNP 195828 195828 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1348 SAMTools SNP 199358 199358 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1348 SAMTools SNP 199425 199425 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1348 SAMTools SNP 199845 199845 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.0051%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C63:66 scaffold1348 SAMTools SNP 200166 200166 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 39367 39367 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 39388 39388 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 39459 39459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 39480 39480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 63545 63545 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1349 SAMTools SNP 68313 68313 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1349 SAMTools SNP 68335 68335 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 68464 68464 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 69987 69987 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1349 SAMTools SNP 76430 76430 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 76581 76581 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1349 SAMTools SNP 76591 76591 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1349 SAMTools SNP 76686 76686 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.35%2C0.018%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C251:37 scaffold1349 SAMTools SNP 79741 79741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1349 SAMTools SNP 79763 79763 99.3 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C99%2C84%2C138%2C0%2C126:27 scaffold1349 SAMTools SNP 79784 79784 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 79795 79795 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 80791 80791 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 80809 80809 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 80905 80905 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1349 SAMTools SNP 81369 81369 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1349 SAMTools SNP 81375 81375 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1349 SAMTools SNP 81878 81878 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold1349 SAMTools SNP 81943 81943 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.59%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1349 SAMTools SNP 81962 81962 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C6%2C30%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.25%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1349 SAMTools SNP 81991 81991 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1349 SAMTools SNP 82501 82501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C45%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1349 SAMTools SNP 83213 83213 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C40%2C3%2C11%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.74%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1349 SAMTools SNP 83217 83217 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C46%2C3%2C13%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.75%2C0.26%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1349 SAMTools SNP 83611 83611 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1349 SAMTools SNP 84348 84348 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C99%2C0:99 scaffold1349 SAMTools SNP 85212 85212 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.39%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C76:41 scaffold1349 SAMTools SNP 85260 85260 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D46%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1349 SAMTools SNP 85727 85727 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C0%3BMQ%3D46%3BFQ%3D37%3BPV4%3D0.077%2C0.45%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C64:67 scaffold1349 SAMTools SNP 85743 85743 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D44%3BFQ%3D37%3BPV4%3D0.2%2C0.15%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C231:67 scaffold1349 SAMTools SNP 85805 85805 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C33%2C0:63 scaffold1349 SAMTools SNP 87333 87333 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D48%3BFQ%3D-50%3BPV4%3D0.091%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C23%2C0:43 scaffold1349 SAMTools SNP 87366 87366 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C11%3BMQ%3D45%3BFQ%3D18.1%3BPV4%3D0.62%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1349 SAMTools SNP 87384 87384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1349 SAMTools SNP 89424 89424 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C41%3BMQ%3D49%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1349 SAMTools SNP 89463 89463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C15%2C4%3BMQ%3D48%3BFQ%3D178%3BPV4%3D0.0025%2C0.064%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1349 SAMTools SNP 89807 89807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C29%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1349 SAMTools SNP 89824 89824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C38%2C19%3BMQ%3D50%3BFQ%3D-163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C136%2C0:99 scaffold1349 SAMTools SNP 90466 90466 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.17%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1349 SAMTools SNP 91429 91429 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.009%2C0.09%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1349 SAMTools SNP 93832 93832 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1349 SAMTools SNP 94962 94962 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1349 SAMTools SNP 95029 95029 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 95287 95287 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 95304 95304 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 95332 95332 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 97065 97065 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C76:43 scaffold1349 SAMTools SNP 97074 97074 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1349 SAMTools SNP 97075 97075 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 97084 97084 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 97107 97107 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 97119 97119 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 97120 97120 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 98421 98421 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1349 SAMTools SNP 98436 98436 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1349 SAMTools SNP 98537 98537 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1349 SAMTools SNP 109368 109368 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C63%2C0:99 scaffold1349 SAMTools SNP 110718 110718 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1349 SAMTools SNP 110814 110814 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C157:99 scaffold1349 SAMTools SNP 110868 110868 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1349 SAMTools SNP 110878 110878 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1349 SAMTools SNP 111187 111187 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1349 SAMTools SNP 111366 111366 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1349 SAMTools SNP 111393 111393 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1349 SAMTools SNP 111822 111822 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold1349 SAMTools SNP 111839 111839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1349 SAMTools SNP 111980 111980 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.014%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1349 SAMTools SNP 112721 112721 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1349 SAMTools SNP 113273 113273 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1349 SAMTools SNP 113282 113282 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 113323 113323 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1349 SAMTools SNP 113365 113365 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1349 SAMTools SNP 114293 114293 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1349 SAMTools SNP 114345 114345 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C212:99 scaffold1349 SAMTools SNP 116713 116713 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1349 SAMTools SNP 116754 116754 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1349 SAMTools SNP 118503 118503 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1349 SAMTools SNP 119131 119131 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1349 SAMTools SNP 119328 119328 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 119355 119355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 119765 119765 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.36%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1349 SAMTools SNP 204063 204063 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 204067 204067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 214093 214093 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C190:47 scaffold1349 SAMTools SNP 214127 214127 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold1349 SAMTools SNP 214206 214206 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 218152 218152 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1349 SAMTools SNP 218161 218161 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1349 SAMTools SNP 218950 218950 96.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C21%2C0:39 scaffold1349 SAMTools SNP 219135 219135 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 220541 220541 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1349 SAMTools SNP 220668 220668 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1349 SAMTools SNP 223203 223203 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1349 SAMTools SNP 223291 223291 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1349 SAMTools SNP 223599 223599 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold1349 SAMTools SNP 223624 223624 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1349 SAMTools SNP 225237 225237 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1349 SAMTools SNP 225249 225249 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1349 SAMTools SNP 225680 225680 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1349 SAMTools SNP 225928 225928 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1349 SAMTools SNP 226755 226755 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1349 SAMTools SNP 227202 227202 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1349 SAMTools SNP 229266 229266 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.04%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1349 SAMTools SNP 229308 229308 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold1349 SAMTools SNP 230255 230255 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.22%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1349 SAMTools SNP 235883 235883 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold1350 SAMTools SNP 27366 27366 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold1350 SAMTools SNP 27743 27743 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C81%2C0:99 scaffold1350 SAMTools SNP 32421 32421 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00023%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1350 SAMTools SNP 35103 35103 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1350 SAMTools SNP 36245 36245 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C149:77 scaffold1350 SAMTools SNP 36262 36262 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1350 SAMTools SNP 36359 36359 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1350 SAMTools SNP 36360 36360 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.017%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C130:34 scaffold1350 SAMTools SNP 36402 36402 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C10%3BMQ%3D49%3BFQ%3D175%3BPV4%3D0.096%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1350 SAMTools SNP 37605 37605 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1350 SAMTools SNP 38451 38451 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1350 SAMTools SNP 38511 38511 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 41796 41796 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1350 SAMTools SNP 46700 46700 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1350 SAMTools SNP 55067 55067 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1350 SAMTools SNP 56452 56452 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 56886 56886 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1350 SAMTools SNP 63203 63203 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1350 SAMTools SNP 63259 63259 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold1350 SAMTools SNP 63877 63877 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1350 SAMTools SNP 64041 64041 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1350 SAMTools SNP 74721 74721 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 75898 75898 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1350 SAMTools SNP 77642 77642 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1350 SAMTools SNP 82896 82896 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1350 SAMTools SNP 82928 82928 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1350 SAMTools SNP 85072 85072 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C54%2C0:99 scaffold1350 SAMTools SNP 89413 89413 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1350 SAMTools SNP 89438 89438 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C24%2C0:45 scaffold1350 SAMTools SNP 89867 89867 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold1350 SAMTools SNP 91949 91949 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 92000 92000 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 92551 92551 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1350 SAMTools SNP 93802 93802 51.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1350 SAMTools SNP 110589 110589 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1350 SAMTools SNP 122866 122866 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 123250 123250 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold1350 SAMTools SNP 124580 124580 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 124716 124716 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1350 SAMTools SNP 125138 125138 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1350 SAMTools SNP 129237 129237 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1350 SAMTools SNP 129676 129676 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.15%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1350 SAMTools SNP 129723 129723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C11%3BMQ%3D46%3BFQ%3D105%3BPV4%3D0.0048%2C0.1%2C0.14%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1350 SAMTools SNP 132154 132154 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C4%2C8%3BMQ%3D48%3BFQ%3D209%3BPV4%3D0.066%2C0.045%2C0.028%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1350 SAMTools SNP 132382 132382 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.033%2C1%2C0.059%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 132418 132418 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.49%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 132419 132419 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 132433 132433 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.2%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1350 SAMTools SNP 133585 133585 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1350 SAMTools SNP 133594 133594 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1350 SAMTools SNP 133612 133612 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1350 SAMTools SNP 133630 133630 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1350 SAMTools SNP 133663 133663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C18%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.44%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold1350 SAMTools SNP 134483 134483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1350 SAMTools SNP 134731 134731 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1350 SAMTools SNP 134740 134740 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1350 SAMTools SNP 134814 134814 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 135285 135285 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C2%3BMQ%3D43%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C168:63 scaffold1350 SAMTools SNP 139006 139006 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1350 SAMTools SNP 148485 148485 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C42%2C0:81 scaffold1350 SAMTools SNP 148536 148536 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C1%3BMQ%3D49%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C141%2C0:99 scaffold1350 SAMTools SNP 148620 148620 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C35%3BMQ%3D49%3BFQ%3D-131%3BPV4%3D0.31%2C0.24%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1350 SAMTools SNP 152166 152166 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1350 SAMTools SNP 152167 152167 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1350 SAMTools SNP 152235 152235 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C57%2C0:99 scaffold1350 SAMTools SNP 152884 152884 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 152932 152932 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 153307 153307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C74%3BMQ%3D23%3BFQ%3D-264%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C237%2C0:99 scaffold1350 SAMTools SNP 153711 153711 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1350 SAMTools SNP 153787 153787 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C15%2C0%3BMQ%3D45%3BFQ%3D114%3BPV4%3D0.067%2C0.0015%2C0.034%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1350 SAMTools SNP 153818 153818 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C5%2C13%2C0%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D0.58%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1350 SAMTools SNP 155044 155044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C115%2C4%3BMQ%3D47%3BFQ%3D224%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1350 SAMTools SNP 155119 155119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C36%2C20%3BMQ%3D45%3BFQ%3D211%3BPV4%3D1.8e-07%2C0.069%2C1%2C4.4e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1350 SAMTools SNP 161051 161051 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 161053 161053 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 161093 161093 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1350 SAMTools SNP 190027 190027 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1350 SAMTools SNP 223137 223137 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1350 SAMTools SNP 232364 232364 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C8%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D9.1e-06%2C7.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C243:44 scaffold1350 SAMTools SNP 232817 232817 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1350 SAMTools SNP 232842 232842 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1350 SAMTools SNP 232843 232843 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1350 SAMTools SNP 236220 236220 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1350 SAMTools SNP 236247 236247 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1350 SAMTools SNP 236508 236508 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1350 SAMTools SNP 237168 237168 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1350 SAMTools SNP 239421 239421 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1350 SAMTools SNP 240388 240388 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 240410 240410 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 240447 240447 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1350 SAMTools SNP 240757 240757 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 240793 240793 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1350 SAMTools SNP 241508 241508 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1350 SAMTools SNP 256503 256503 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1350 SAMTools SNP 257894 257894 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1350 SAMTools SNP 259555 259555 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0114%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1350 SAMTools SNP 259560 259560 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1350 SAMTools SNP 260403 260403 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1350 SAMTools SNP 263496 263496 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C178%2C0:93 scaffold1350 SAMTools SNP 263703 263703 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 264216 264216 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 266126 266126 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C591%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 266153 266153 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1350 SAMTools SNP 266183 266183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 266883 266883 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 266921 266921 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C12%3BMQ%3D50%3BFQ%3D-140%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C113%2C0:99 scaffold1350 SAMTools SNP 268002 268002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 268807 268807 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1350 SAMTools SNP 272861 272861 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C53%2C8%2C10%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1350 SAMTools SNP 273302 273302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C56%2C27%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 273338 273338 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C9%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.36%2C5.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1350 SAMTools SNP 273401 273401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1350 SAMTools SNP 273593 273593 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1350 SAMTools SNP 286236 286236 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 287534 287534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C15%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.31%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1350 SAMTools SNP 290674 290674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1089%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C356%2C183%2C384%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 291950 291950 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1350 SAMTools SNP 292061 292061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1113%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C631%2C474%3BMQ%3D38%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 294029 294029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C145%2C143%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 294466 294466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C115%2C274%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 294622 294622 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C36%2C102%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-05%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 295030 295030 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C67%2C68%2C111%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1.1e-10%2C1.4e-169%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C188:75 scaffold1350 SAMTools SNP 295066 295066 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C57%2C0:99 scaffold1350 SAMTools SNP 295099 295099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C37%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1350 SAMTools SNP 295114 295114 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1350 SAMTools SNP 296796 296796 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1418%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D405%2C386%2C338%2C289%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.49%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 297187 297187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1369%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D392%2C380%2C300%2C287%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 297196 297196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1325%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D280%2C298%2C357%2C390%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 298137 298137 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C20%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C178%2C0:99 scaffold1350 SAMTools SNP 298951 298951 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C81%2C0:99 scaffold1350 SAMTools SNP 298975 298975 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1350 SAMTools SNP 305893 305893 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 306016 306016 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.052%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C173:42 scaffold1350 SAMTools SNP 307716 307716 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1350 SAMTools SNP 307752 307752 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1350 SAMTools SNP 308378 308378 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 308409 308409 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1350 SAMTools SNP 308460 308460 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1350 SAMTools SNP 308500 308500 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1350 SAMTools SNP 309003 309003 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C3%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.66%2C8.5e-37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1350 SAMTools SNP 309066 309066 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1350 SAMTools SNP 310978 310978 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1350 SAMTools SNP 311821 311821 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1350 SAMTools SNP 311831 311831 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1350 SAMTools SNP 312258 312258 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1350 SAMTools SNP 312830 312830 223 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1350 SAMTools SNP 316028 316028 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1350 SAMTools SNP 318986 318986 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 319629 319629 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1350 SAMTools SNP 319662 319662 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1350 SAMTools SNP 320199 320199 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 320516 320516 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1350 SAMTools SNP 320565 320565 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1350 SAMTools SNP 321062 321062 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold1350 SAMTools SNP 321285 321285 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 336730 336730 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1350 SAMTools SNP 337344 337344 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 340152 340152 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 340178 340178 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 343522 343522 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.00044%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C120:94 scaffold1350 SAMTools SNP 370904 370904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1350 SAMTools SNP 377135 377135 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 377141 377141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 378822 378822 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold1350 SAMTools SNP 378843 378843 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1350 SAMTools SNP 378914 378914 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1350 SAMTools SNP 387267 387267 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1350 SAMTools SNP 391093 391093 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.29%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold1350 SAMTools SNP 396140 396140 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1350 SAMTools SNP 408978 408978 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1350 SAMTools SNP 409038 409038 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1350 SAMTools SNP 409461 409461 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1350 SAMTools SNP 410827 410827 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D27%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C63%2C0:99 scaffold1350 SAMTools SNP 410837 410837 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1350 SAMTools SNP 410956 410956 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D17%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C54%2C0:97 scaffold1350 SAMTools SNP 411001 411001 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D17%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C54%2C0:97 scaffold1350 SAMTools SNP 422259 422259 89.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold1350 SAMTools SNP 489908 489908 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1350 SAMTools SNP 489959 489959 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 947 947 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 1015 1015 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 1134 1134 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 1136 1136 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 167456 167456 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1352 SAMTools SNP 185804 185804 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1352 SAMTools SNP 185807 185807 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1352 SAMTools SNP 186029 186029 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C66%2C0:99 scaffold1352 SAMTools SNP 194366 194366 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1352 SAMTools SNP 197633 197633 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1352 SAMTools SNP 197653 197653 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1352 SAMTools SNP 206461 206461 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1352 SAMTools SNP 219319 219319 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C102%2C0:99 scaffold1352 SAMTools SNP 221463 221463 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D35%3BFQ%3D4.6%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C42:28 scaffold1352 SAMTools SNP 224728 224728 33.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1352 SAMTools SNP 226227 226227 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1352 SAMTools SNP 226228 226228 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1352 SAMTools SNP 226692 226692 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1352 SAMTools SNP 226750 226750 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.66%2C0.11%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1352 SAMTools SNP 227713 227713 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C4%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.69%2C0.38%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1352 SAMTools SNP 227764 227764 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C2%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1352 SAMTools SNP 227785 227785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C16%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1352 SAMTools SNP 228855 228855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1352 SAMTools SNP 229008 229008 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 229183 229183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 229228 229228 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 229483 229483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 229639 229639 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1352 SAMTools SNP 229854 229854 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1352 SAMTools SNP 230043 230043 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1352 SAMTools SNP 230544 230544 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 230740 230740 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1352 SAMTools SNP 230793 230793 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold1352 SAMTools SNP 230808 230808 80.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C18%2C0:33 scaffold1352 SAMTools SNP 230881 230881 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 231293 231293 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1352 SAMTools SNP 242491 242491 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1352 SAMTools SNP 243977 243977 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C6.6e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1352 SAMTools SNP 245895 245895 46.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold1352 SAMTools SNP 246249 246249 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C4.4e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C26:29 scaffold1352 SAMTools SNP 246300 246300 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1352 SAMTools SNP 247085 247085 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1352 SAMTools SNP 247184 247184 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 247464 247464 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C210:34 scaffold1352 SAMTools SNP 247478 247478 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1352 SAMTools SNP 247491 247491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.096%2C0.35%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1352 SAMTools SNP 247503 247503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1352 SAMTools SNP 247530 247530 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.3%2C0.11%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1352 SAMTools SNP 248036 248036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1352 SAMTools SNP 249014 249014 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1352 SAMTools SNP 249632 249632 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C9.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1352 SAMTools SNP 249873 249873 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.081%2C2.1e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C124:74 scaffold1352 SAMTools SNP 252052 252052 63.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold1352 SAMTools SNP 252076 252076 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1352 SAMTools SNP 256959 256959 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C45%2C0:79 scaffold1352 SAMTools SNP 256988 256988 44.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C2:5 scaffold1352 SAMTools SNP 258551 258551 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C42%2C12%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.31%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 258557 258557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1352 SAMTools SNP 259316 259316 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.36%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 259459 259459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C28%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1352 SAMTools SNP 259746 259746 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 259770 259770 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 260000 260000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1352 SAMTools SNP 260340 260340 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C11%2C59%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 260343 260343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C17%2C61%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 260442 260442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C91%2C13%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 260825 260825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1352 SAMTools SNP 261209 261209 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C16%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1352 SAMTools SNP 261601 261601 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C67%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1352 SAMTools SNP 263658 263658 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0031%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C232:97 scaffold1352 SAMTools SNP 264408 264408 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C71%2C109%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 265132 265132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C57%2C0%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.078%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 265330 265330 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C47%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1352 SAMTools SNP 266587 266587 6.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D27%3BFQ%3D-34%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C7%2C0:8 scaffold1352 SAMTools SNP 270221 270221 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1352 SAMTools SNP 270591 270591 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C26%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1352 SAMTools SNP 271394 271394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C39%2C51%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C8.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 271469 271469 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1352 SAMTools SNP 271959 271959 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C35%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 272007 272007 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 272635 272635 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C92%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 272879 272879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C84%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 272921 272921 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C4%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1352 SAMTools SNP 273313 273313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1352 SAMTools SNP 279931 279931 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1352 SAMTools SNP 280629 280629 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C30%2C0:57 scaffold1352 SAMTools SNP 280792 280792 36.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1352 SAMTools SNP 280896 280896 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1352 SAMTools SNP 290003 290003 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1352 SAMTools SNP 292334 292334 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1352 SAMTools SNP 292771 292771 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1352 SAMTools SNP 293006 293006 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 297135 297135 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1352 SAMTools SNP 301138 301138 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1352 SAMTools SNP 447339 447339 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1352 SAMTools SNP 448022 448022 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1352 SAMTools SNP 448040 448040 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C39:42 scaffold1352 SAMTools SNP 451248 451248 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1352 SAMTools SNP 451399 451399 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1352 SAMTools SNP 451888 451888 4.11 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1352 SAMTools SNP 462647 462647 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 462667 462667 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 471227 471227 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 471299 471299 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1352 SAMTools SNP 473642 473642 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold1352 SAMTools SNP 473662 473662 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold1352 SAMTools SNP 473688 473688 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1352 SAMTools SNP 473816 473816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 473821 473821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 475530 475530 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 475545 475545 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 475618 475618 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 475640 475640 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 475919 475919 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.7e-08%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C201:79 scaffold1352 SAMTools SNP 476402 476402 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold1352 SAMTools SNP 478782 478782 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 478842 478842 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 478970 478970 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1352 SAMTools SNP 479147 479147 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1352 SAMTools SNP 479180 479180 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1352 SAMTools SNP 479675 479675 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 479693 479693 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1352 SAMTools SNP 480792 480792 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 482522 482522 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 489799 489799 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.61%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1352 SAMTools SNP 490912 490912 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1352 SAMTools SNP 490913 490913 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1352 SAMTools SNP 490940 490940 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1352 SAMTools SNP 491371 491371 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1352 SAMTools SNP 491380 491380 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1352 SAMTools SNP 491730 491730 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold1352 SAMTools SNP 491780 491780 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 491815 491815 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1352 SAMTools SNP 492373 492373 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1352 SAMTools SNP 492424 492424 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 492453 492453 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1352 SAMTools SNP 492674 492674 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1352 SAMTools SNP 492833 492833 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1352 SAMTools SNP 492892 492892 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1352 SAMTools SNP 493590 493590 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1352 SAMTools SNP 493931 493931 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1352 SAMTools SNP 493950 493950 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 494174 494174 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1352 SAMTools SNP 494376 494376 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 495044 495044 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1352 SAMTools SNP 501085 501085 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1352 SAMTools SNP 501240 501240 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1352 SAMTools SNP 501259 501259 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1352 SAMTools SNP 503854 503854 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1352 SAMTools SNP 503944 503944 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1352 SAMTools SNP 505041 505041 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1352 SAMTools SNP 505344 505344 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1352 SAMTools SNP 506037 506037 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1352 SAMTools SNP 522560 522560 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1353 SAMTools SNP 1624 1624 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1353 SAMTools SNP 1632 1632 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1353 SAMTools SNP 25125 25125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1353 SAMTools SNP 25875 25875 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1353 SAMTools SNP 25894 25894 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1353 SAMTools SNP 27349 27349 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1353 SAMTools SNP 27351 27351 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1353 SAMTools SNP 78669 78669 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D32%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C79:62 scaffold1353 SAMTools SNP 78773 78773 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D47%3BFQ%3D52.7%3BPV4%3D1%2C0.00034%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C80:83 scaffold1353 SAMTools SNP 78787 78787 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D47%3BFQ%3D91%3BPV4%3D1%2C8.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C118:99 scaffold1353 SAMTools SNP 78807 78807 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C6.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C196:94 scaffold1353 SAMTools SNP 79165 79165 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1354 SAMTools SNP 571 571 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1354 SAMTools SNP 32887 32887 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 37237 37237 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 37261 37261 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1354 SAMTools SNP 38353 38353 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 38874 38874 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1354 SAMTools SNP 39546 39546 27.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C0:3 scaffold1354 SAMTools SNP 41203 41203 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 104891 104891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C12%3BMQ%3D43%3BFQ%3D30%3BPV4%3D0.17%2C0.15%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1354 SAMTools SNP 104906 104906 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D44%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1354 SAMTools SNP 104907 104907 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C3%3BMQ%3D44%3BFQ%3D64%3BPV4%3D0.27%2C1%2C0.026%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1354 SAMTools SNP 105237 105237 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1354 SAMTools SNP 106658 106658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C16%2C3%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.41%2C0.091%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 108479 108479 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C0%2C7%3BMQ%3D47%3BFQ%3D61%3BPV4%3D0.31%2C1%2C0.086%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1354 SAMTools SNP 108485 108485 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C0%2C7%3BMQ%3D47%3BFQ%3D64%3BPV4%3D0.31%2C1%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1354 SAMTools SNP 109241 109241 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.26%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1354 SAMTools SNP 109253 109253 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1354 SAMTools SNP 109840 109840 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 109867 109867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 110918 110918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.27%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 112970 112970 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold1354 SAMTools SNP 114474 114474 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 114501 114501 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1354 SAMTools SNP 118659 118659 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1354 SAMTools SNP 121255 121255 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C10%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.019%2C0.1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1354 SAMTools SNP 121256 121256 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C10%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.019%2C0.11%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1354 SAMTools SNP 122513 122513 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.46%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 123285 123285 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D9.4e-06%2C0.14%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1354 SAMTools SNP 123327 123327 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C10%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1354 SAMTools SNP 123371 123371 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 124784 124784 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 127943 127943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C33%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 128403 128403 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.14%2C2.1e-17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1354 SAMTools SNP 128474 128474 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C14%2C7%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.77%2C7.6e-64%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1354 SAMTools SNP 128622 128622 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C84%2C0:99 scaffold1354 SAMTools SNP 129670 129670 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C45%2C0:86 scaffold1354 SAMTools SNP 132816 132816 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1354 SAMTools SNP 133281 133281 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C30%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.04%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C197:87 scaffold1354 SAMTools SNP 133358 133358 158 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold1354 SAMTools SNP 133517 133517 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1354 SAMTools SNP 135232 135232 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1354 SAMTools SNP 147243 147243 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1354 SAMTools SNP 147317 147317 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C9%2C0:16 scaffold1354 SAMTools SNP 167014 167014 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 170199 170199 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1354 SAMTools SNP 174464 174464 63.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold1354 SAMTools SNP 176698 176698 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 179690 179690 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1354 SAMTools SNP 184148 184148 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 184161 184161 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1354 SAMTools SNP 188424 188424 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1354 SAMTools SNP 189033 189033 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1354 SAMTools SNP 189038 189038 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1354 SAMTools SNP 189967 189967 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C202:99 scaffold1354 SAMTools SNP 190099 190099 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C230:68 scaffold1354 SAMTools SNP 190126 190126 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1354 SAMTools SNP 190298 190298 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1354 SAMTools SNP 191722 191722 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1354 SAMTools SNP 191742 191742 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D4.9e-06%2C0.02%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C232:99 scaffold1354 SAMTools SNP 191986 191986 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C113:99 scaffold1354 SAMTools SNP 192002 192002 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C39%2C0:75 scaffold1354 SAMTools SNP 192673 192673 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1354 SAMTools SNP 192982 192982 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1354 SAMTools SNP 194022 194022 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1354 SAMTools SNP 194446 194446 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1354 SAMTools SNP 194506 194506 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C36%2C0:69 scaffold1354 SAMTools SNP 194932 194932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1354 SAMTools SNP 194989 194989 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold1354 SAMTools SNP 195040 195040 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1354 SAMTools SNP 196148 196148 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 196762 196762 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1354 SAMTools SNP 197164 197164 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1354 SAMTools SNP 197189 197189 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C24%2C0:45 scaffold1354 SAMTools SNP 199562 199562 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C8%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.14%2C0.45%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 199584 199584 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1354 SAMTools SNP 199607 199607 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C7%3BMQ%3D46%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1354 SAMTools SNP 199616 199616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C13%3BMQ%3D46%3BFQ%3D142%3BPV4%3D1%2C0.14%2C0.1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1354 SAMTools SNP 200243 200243 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D27%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C7%2C0:12 scaffold1354 SAMTools SNP 201647 201647 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D46%3BFQ%3D15.1%3BPV4%3D0.4%2C9e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C85:44 scaffold1354 SAMTools SNP 207390 207390 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1354 SAMTools SNP 212342 212342 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1354 SAMTools SNP 215759 215759 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.3e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1354 SAMTools SNP 217593 217593 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C0%2C15%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1354 SAMTools SNP 217646 217646 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C0%2C28%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1354 SAMTools SNP 218038 218038 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1354 SAMTools SNP 218149 218149 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1354 SAMTools SNP 218694 218694 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 219245 219245 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 220396 220396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1354 SAMTools SNP 220429 220429 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.36%2C1.9e-05%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1354 SAMTools SNP 221542 221542 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C10%2C16%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.23%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold1354 SAMTools SNP 221560 221560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1354 SAMTools SNP 222064 222064 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1354 SAMTools SNP 227931 227931 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 227939 227939 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 227979 227979 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1354 SAMTools SNP 228424 228424 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1354 SAMTools SNP 228425 228425 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1354 SAMTools SNP 228466 228466 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold1354 SAMTools SNP 231160 231160 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1354 SAMTools SNP 233105 233105 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1354 SAMTools SNP 233153 233153 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1354 SAMTools SNP 233170 233170 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1354 SAMTools SNP 234351 234351 83.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold1354 SAMTools SNP 236803 236803 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C41:44 scaffold1354 SAMTools SNP 238319 238319 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1354 SAMTools SNP 238964 238964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1354 SAMTools SNP 239003 239003 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1354 SAMTools SNP 240480 240480 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1354 SAMTools SNP 240734 240734 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1354 SAMTools SNP 277201 277201 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1354 SAMTools SNP 317609 317609 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1354 SAMTools SNP 317797 317797 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold1354 SAMTools SNP 329856 329856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C37%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 329859 329859 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.21%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 330330 330330 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0013%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C85:55 scaffold1354 SAMTools SNP 331017 331017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C18%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 331032 331032 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 332303 332303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.083%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 332620 332620 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1354 SAMTools SNP 332644 332644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1354 SAMTools SNP 332769 332769 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1354 SAMTools SNP 334394 334394 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C124:99 scaffold1354 SAMTools SNP 334397 334397 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C239:99 scaffold1354 SAMTools SNP 337477 337477 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.2%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C88:52 scaffold1354 SAMTools SNP 337500 337500 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C175:99 scaffold1354 SAMTools SNP 337510 337510 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1354 SAMTools SNP 340189 340189 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C81%2C0:99 scaffold1354 SAMTools SNP 340628 340628 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.034%2C4.4e-11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1354 SAMTools SNP 340976 340976 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1354 SAMTools SNP 346255 346255 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1354 SAMTools SNP 346983 346983 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1354 SAMTools SNP 349068 349068 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1354 SAMTools SNP 352884 352884 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 353463 353463 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1354 SAMTools SNP 355558 355558 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1354 SAMTools SNP 355663 355663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1354 SAMTools SNP 355691 355691 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C10%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1354 SAMTools SNP 356179 356179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1354 SAMTools SNP 356180 356180 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1354 SAMTools SNP 357678 357678 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0056%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1354 SAMTools SNP 357679 357679 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0028%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1354 SAMTools SNP 357839 357839 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C148%2C0:99 scaffold1354 SAMTools SNP 377750 377750 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.026%2C5.4e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1355 SAMTools SNP 75363 75363 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1355 SAMTools SNP 75742 75742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1355 SAMTools SNP 76870 76870 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C246:99 scaffold1355 SAMTools SNP 76887 76887 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1355 SAMTools SNP 76906 76906 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1355 SAMTools SNP 76923 76923 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.5%2C0.097%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1355 SAMTools SNP 77164 77164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1355 SAMTools SNP 77242 77242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1355 SAMTools SNP 81008 81008 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1355 SAMTools SNP 83303 83303 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1355 SAMTools SNP 83333 83333 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1355 SAMTools SNP 84518 84518 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C157:85 scaffold1355 SAMTools SNP 84792 84792 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1355 SAMTools SNP 84915 84915 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1355 SAMTools SNP 84924 84924 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1355 SAMTools SNP 86306 86306 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1355 SAMTools SNP 86583 86583 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1355 SAMTools SNP 86859 86859 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1355 SAMTools SNP 87438 87438 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1357 SAMTools SNP 5704 5704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 5802 5802 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 5821 5821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 27410 27410 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1357 SAMTools SNP 31219 31219 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1357 SAMTools SNP 31221 31221 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1357 SAMTools SNP 31262 31262 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1357 SAMTools SNP 31453 31453 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1357 SAMTools SNP 31478 31478 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1357 SAMTools SNP 31582 31582 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 33443 33443 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 38091 38091 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 38287 38287 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1357 SAMTools SNP 38457 38457 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1357 SAMTools SNP 38467 38467 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1357 SAMTools SNP 40547 40547 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1357 SAMTools SNP 40551 40551 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1357 SAMTools SNP 43978 43978 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1357 SAMTools SNP 44027 44027 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1357 SAMTools SNP 48189 48189 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C4.6e-11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C129:94 scaffold1357 SAMTools SNP 48627 48627 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1357 SAMTools SNP 50120 50120 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1357 SAMTools SNP 51391 51391 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1357 SAMTools SNP 83129 83129 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1358 SAMTools SNP 1168 1168 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1358 SAMTools SNP 5680 5680 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C216:70 scaffold1358 SAMTools SNP 6703 6703 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1358 SAMTools SNP 6904 6904 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.56%3BPV4%3D0.25%2C5.9e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C26:29 scaffold1358 SAMTools SNP 6986 6986 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1358 SAMTools SNP 14956 14956 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1358 SAMTools SNP 24498 24498 35.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1358 SAMTools SNP 40466 40466 31.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1358 SAMTools SNP 74113 74113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1358 SAMTools SNP 81969 81969 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1358 SAMTools SNP 88681 88681 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C1%2C71%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C6.1e-39%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1358 SAMTools SNP 88687 88687 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D122%2C1%2C62%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.6e-32%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1358 SAMTools SNP 96704 96704 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold1358 SAMTools SNP 96760 96760 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1358 SAMTools SNP 97755 97755 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1358 SAMTools SNP 97782 97782 73.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold1358 SAMTools SNP 98228 98228 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1358 SAMTools SNP 114954 114954 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C39%2C0:75 scaffold1358 SAMTools SNP 115182 115182 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00016%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C203:40 scaffold1358 SAMTools SNP 117811 117811 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1358 SAMTools SNP 117861 117861 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1358 SAMTools SNP 120735 120735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C287%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1358 SAMTools SNP 120756 120756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C180%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1358 SAMTools SNP 260329 260329 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C1%2C32%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.08%2C2.8e-42%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1358 SAMTools SNP 264159 264159 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D0.061%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C114%2C0:99 scaffold1358 SAMTools SNP 265219 265219 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C28%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C187%2C0:99 scaffold1358 SAMTools SNP 265536 265536 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C4.7e-14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1358 SAMTools SNP 265856 265856 24.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D480%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1358 SAMTools SNP 266460 266460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C196%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1358 SAMTools SNP 266478 266478 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C255%2C0:99 scaffold1358 SAMTools SNP 266556 266556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1358 SAMTools SNP 267587 267587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C27%3BMQ%3D49%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1358 SAMTools SNP 267600 267600 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C30%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1358 SAMTools SNP 267620 267620 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C63%3BMQ%3D48%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1358 SAMTools SNP 286600 286600 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1358 SAMTools SNP 286645 286645 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1359 SAMTools SNP 13 13 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1359 SAMTools SNP 233 233 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C14%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.35%2C7e-48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1359 SAMTools SNP 5562 5562 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C33%2C0:63 scaffold1359 SAMTools SNP 6447 6447 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1359 SAMTools SNP 6496 6496 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1359 SAMTools SNP 7966 7966 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0038%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7.1e-06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1359 SAMTools SNP 8309 8309 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1359 SAMTools SNP 8725 8725 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.3%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1359 SAMTools SNP 9787 9787 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1359 SAMTools SNP 9799 9799 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1359 SAMTools SNP 15043 15043 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1359 SAMTools SNP 15273 15273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 16642 16642 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C24%2C0:45 scaffold1359 SAMTools SNP 16989 16989 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C32%2C26%2C30%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.16%2C1.9e-103%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1359 SAMTools SNP 17407 17407 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1359 SAMTools SNP 17450 17450 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0148%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0062%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1359 SAMTools SNP 18026 18026 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C42%2C0:81 scaffold1359 SAMTools SNP 18556 18556 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.12%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C204:93 scaffold1359 SAMTools SNP 19273 19273 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1359 SAMTools SNP 19275 19275 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1359 SAMTools SNP 20288 20288 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00042%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1359 SAMTools SNP 23025 23025 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1359 SAMTools SNP 23250 23250 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1359 SAMTools SNP 23735 23735 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1359 SAMTools SNP 35831 35831 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1359 SAMTools SNP 46762 46762 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C13%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1359 SAMTools SNP 46763 46763 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1359 SAMTools SNP 47732 47732 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 48368 48368 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 59977 59977 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1359 SAMTools SNP 60190 60190 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C60:63 scaffold1359 SAMTools SNP 60898 60898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1359 SAMTools SNP 60919 60919 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1359 SAMTools SNP 60943 60943 64.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C2.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C14:17 scaffold1359 SAMTools SNP 61167 61167 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1359 SAMTools SNP 61376 61376 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 61493 61493 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold1359 SAMTools SNP 61565 61565 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1359 SAMTools SNP 62537 62537 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1359 SAMTools SNP 62589 62589 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1359 SAMTools SNP 63026 63026 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1359 SAMTools SNP 64648 64648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 65929 65929 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold1359 SAMTools SNP 65969 65969 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C22:25 scaffold1359 SAMTools SNP 65984 65984 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold1359 SAMTools SNP 66696 66696 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold1359 SAMTools SNP 66844 66844 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1359 SAMTools SNP 67767 67767 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1359 SAMTools SNP 67773 67773 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1359 SAMTools SNP 69647 69647 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold1359 SAMTools SNP 69693 69693 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1359 SAMTools SNP 69816 69816 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1359 SAMTools SNP 70387 70387 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.39%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C69:28 scaffold1359 SAMTools SNP 70878 70878 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1359 SAMTools SNP 71024 71024 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold1359 SAMTools SNP 71056 71056 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1359 SAMTools SNP 71714 71714 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1359 SAMTools SNP 71746 71746 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 71790 71790 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1359 SAMTools SNP 72112 72112 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1359 SAMTools SNP 72143 72143 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1359 SAMTools SNP 72146 72146 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1359 SAMTools SNP 72194 72194 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1359 SAMTools SNP 72386 72386 47.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1359 SAMTools SNP 74055 74055 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 74091 74091 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 74107 74107 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1359 SAMTools SNP 75678 75678 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1359 SAMTools SNP 79430 79430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 79916 79916 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 80499 80499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C75%2C76%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1359 SAMTools SNP 80691 80691 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C38%2C25%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 81027 81027 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C48%2C35%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 81429 81429 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C74%2C22%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C6.3e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 81519 81519 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C9%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 81534 81534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1359 SAMTools SNP 85649 85649 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C84%2C4%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 120745 120745 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.59%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C128:99 scaffold1359 SAMTools SNP 121599 121599 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1359 SAMTools SNP 121601 121601 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1359 SAMTools SNP 123116 123116 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1359 SAMTools SNP 123137 123137 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1359 SAMTools SNP 123186 123186 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1359 SAMTools SNP 123195 123195 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1359 SAMTools SNP 123725 123725 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 125343 125343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 125984 125984 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1359 SAMTools SNP 126841 126841 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1359 SAMTools SNP 135395 135395 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.034%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C109:56 scaffold1359 SAMTools SNP 136542 136542 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1359 SAMTools SNP 136905 136905 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1359 SAMTools SNP 137170 137170 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1359 SAMTools SNP 139179 139179 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C46%2C3%2C27%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.29%2C4.3e-47%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1359 SAMTools SNP 140043 140043 120 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.16%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C61%2C128%2C83%2C0%2C152:70 scaffold1359 SAMTools SNP 140047 140047 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1359 SAMTools SNP 140426 140426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1359 SAMTools SNP 140435 140435 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1359 SAMTools SNP 140453 140453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1359 SAMTools SNP 144776 144776 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1359 SAMTools SNP 145366 145366 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1359 SAMTools SNP 146758 146758 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1359 SAMTools SNP 146786 146786 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1359 SAMTools SNP 148737 148737 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold1359 SAMTools SNP 148747 148747 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1359 SAMTools SNP 151241 151241 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1359 SAMTools SNP 152303 152303 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 152804 152804 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 154120 154120 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1359 SAMTools SNP 154300 154300 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1359 SAMTools SNP 154346 154346 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1359 SAMTools SNP 154369 154369 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1359 SAMTools SNP 155735 155735 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1359 SAMTools SNP 170586 170586 19.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D22%3BFQ%3D-35%3BPV4%3D1%2C0.27%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C8%2C0:13 scaffold1359 SAMTools SNP 170608 170608 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1359 SAMTools SNP 176888 176888 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1359 SAMTools SNP 176890 176890 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 192254 192254 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C12%2C7%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.037%2C1e-11%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C94:97 scaffold1359 SAMTools SNP 192821 192821 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C5.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1359 SAMTools SNP 192873 192873 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C21%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.49%2C4.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1359 SAMTools SNP 193097 193097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1359 SAMTools SNP 193802 193802 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C30%2C0:57 scaffold1359 SAMTools SNP 196191 196191 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold1359 SAMTools SNP 197832 197832 49.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1359 SAMTools SNP 199223 199223 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1359 SAMTools SNP 202628 202628 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1359 SAMTools SNP 203714 203714 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C66%2C0:99 scaffold1359 SAMTools SNP 205285 205285 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold1359 SAMTools SNP 208993 208993 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1359 SAMTools SNP 209442 209442 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D45%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1359 SAMTools SNP 210353 210353 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C79%2C0%2C36%3BMQ%3D46%3BFQ%3D159%3BPV4%3D1%2C1%2C0.037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1359 SAMTools SNP 210391 210391 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C69%2C0%2C34%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1359 SAMTools SNP 232048 232048 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 232307 232307 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 233931 233931 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C43%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C0.2%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1359 SAMTools SNP 241044 241044 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1359 SAMTools SNP 265183 265183 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1359 SAMTools SNP 265940 265940 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C81%2C0:99 scaffold1359 SAMTools SNP 266014 266014 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1359 SAMTools SNP 266086 266086 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1359 SAMTools SNP 272008 272008 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 278854 278854 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1359 SAMTools SNP 278984 278984 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1359 SAMTools SNP 279056 279056 29.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1359 SAMTools SNP 283960 283960 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 284011 284011 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 307554 307554 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1359 SAMTools SNP 307791 307791 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1359 SAMTools SNP 307940 307940 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C69:52 scaffold1359 SAMTools SNP 308101 308101 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C13%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C9.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C31%2C0:59 scaffold1359 SAMTools SNP 308109 308109 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.29%2C1.3e-10%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold1359 SAMTools SNP 308183 308183 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C39%2C0:65 scaffold1359 SAMTools SNP 311400 311400 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1359 SAMTools SNP 311424 311424 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold1359 SAMTools SNP 316933 316933 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1359 SAMTools SNP 316942 316942 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C65:68 scaffold1359 SAMTools SNP 317524 317524 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold1359 SAMTools SNP 317548 317548 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1359 SAMTools SNP 320170 320170 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C22%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.19%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C132:99 scaffold1359 SAMTools SNP 320203 320203 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1359 SAMTools SNP 320230 320230 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1359 SAMTools SNP 320254 320254 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1359 SAMTools SNP 320900 320900 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1359 SAMTools SNP 320917 320917 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1359 SAMTools SNP 321353 321353 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 325047 325047 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 325702 325702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 325711 325711 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 326321 326321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 326381 326381 103 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold1359 SAMTools SNP 326423 326423 126 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C96%2C244%2C0%2C235:45 scaffold1359 SAMTools SNP 327216 327216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1359 SAMTools SNP 327256 327256 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.43%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold1359 SAMTools SNP 327563 327563 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C238:99 scaffold1359 SAMTools SNP 327603 327603 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1359 SAMTools SNP 329031 329031 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1359 SAMTools SNP 329618 329618 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1359 SAMTools SNP 329654 329654 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.62%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1359 SAMTools SNP 329786 329786 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1359 SAMTools SNP 330920 330920 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1359 SAMTools SNP 330979 330979 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold1359 SAMTools SNP 331003 331003 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C203:99 scaffold1359 SAMTools SNP 331014 331014 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.39%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1359 SAMTools SNP 331235 331235 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.54%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C234:99 scaffold1359 SAMTools SNP 331247 331247 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1359 SAMTools SNP 331304 331304 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1359 SAMTools SNP 331337 331337 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1359 SAMTools SNP 331884 331884 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D25.3%3BPV4%3D1%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C54:55 scaffold1359 SAMTools SNP 333059 333059 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1359 SAMTools SNP 334059 334059 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1359 SAMTools SNP 334184 334184 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1359 SAMTools SNP 334194 334194 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold1359 SAMTools SNP 334197 334197 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.007%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1359 SAMTools SNP 334241 334241 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.002%2C0.25%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C209:99 scaffold1359 SAMTools SNP 334251 334251 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C0.063%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1359 SAMTools SNP 334957 334957 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C30%2C0:57 scaffold1359 SAMTools SNP 335082 335082 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1359 SAMTools SNP 344461 344461 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C42%2C0:81 scaffold1359 SAMTools SNP 344516 344516 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C148%2C0:99 scaffold1360 SAMTools SNP 719 719 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 748 748 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.17%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1360 SAMTools SNP 3729 3729 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 4047 4047 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1360 SAMTools SNP 4160 4160 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C147:34 scaffold1360 SAMTools SNP 7037 7037 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C253:66 scaffold1360 SAMTools SNP 9911 9911 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.27%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1360 SAMTools SNP 16138 16138 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C174%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1360 SAMTools SNP 22337 22337 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C96%2C1%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.059%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 29150 29150 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1360 SAMTools SNP 29206 29206 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1360 SAMTools SNP 29212 29212 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1360 SAMTools SNP 34358 34358 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 35210 35210 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1360 SAMTools SNP 36933 36933 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C228:33 scaffold1360 SAMTools SNP 42155 42155 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1360 SAMTools SNP 44417 44417 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.64%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1360 SAMTools SNP 46066 46066 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 48988 48988 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1.5e-05%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1360 SAMTools SNP 49008 49008 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1360 SAMTools SNP 49059 49059 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1360 SAMTools SNP 49516 49516 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C3%2C71%2C10%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.018%2C3.7e-05%2C2.3e-16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 60892 60892 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1360 SAMTools SNP 69796 69796 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.54%2C0.0017%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1360 SAMTools SNP 69944 69944 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.062%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C206:43 scaffold1360 SAMTools SNP 69954 69954 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C153:95 scaffold1360 SAMTools SNP 69978 69978 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.045%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C190:53 scaffold1360 SAMTools SNP 98082 98082 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 98123 98123 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C4%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0011%2C0.47%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C233:99 scaffold1360 SAMTools SNP 98145 98145 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C17%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1360 SAMTools SNP 99489 99489 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1360 SAMTools SNP 99510 99510 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1360 SAMTools SNP 101923 101923 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C29%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1360 SAMTools SNP 101972 101972 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C22%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.027%2C0.2%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1360 SAMTools SNP 101990 101990 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 102963 102963 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.17%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1360 SAMTools SNP 104790 104790 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1360 SAMTools SNP 111331 111331 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1360 SAMTools SNP 111810 111810 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00064%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1360 SAMTools SNP 112390 112390 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C108:36 scaffold1360 SAMTools SNP 112421 112421 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C165:42 scaffold1360 SAMTools SNP 112432 112432 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.087%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C176:42 scaffold1360 SAMTools SNP 115960 115960 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1360 SAMTools SNP 116234 116234 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.26%2C7.4e-08%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1360 SAMTools SNP 118136 118136 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 118507 118507 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1360 SAMTools SNP 119478 119478 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.023%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1360 SAMTools SNP 125524 125524 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 125847 125847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 137224 137224 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D40.6%3BPV4%3D1%2C0.071%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C68:71 scaffold1360 SAMTools SNP 137241 137241 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D20.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C49:50 scaffold1360 SAMTools SNP 147707 147707 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1360 SAMTools SNP 147872 147872 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 147902 147902 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1360 SAMTools SNP 151169 151169 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1360 SAMTools SNP 175589 175589 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1360 SAMTools SNP 181873 181873 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1360 SAMTools SNP 186376 186376 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 186792 186792 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 191642 191642 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1360 SAMTools SNP 192235 192235 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 192372 192372 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1360 SAMTools SNP 194044 194044 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 194072 194072 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1360 SAMTools SNP 194104 194104 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 194131 194131 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1360 SAMTools SNP 195083 195083 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 200098 200098 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 200193 200193 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 210080 210080 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1360 SAMTools SNP 214326 214326 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1360 SAMTools SNP 214395 214395 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1360 SAMTools SNP 227728 227728 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 228516 228516 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1360 SAMTools SNP 229121 229121 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 229510 229510 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 229518 229518 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 230434 230434 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1360 SAMTools SNP 231326 231326 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1360 SAMTools SNP 231392 231392 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C24%2C0:45 scaffold1360 SAMTools SNP 232041 232041 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold1360 SAMTools SNP 232101 232101 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1360 SAMTools SNP 232721 232721 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C90%2C0:99 scaffold1360 SAMTools SNP 232816 232816 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C11%2C15%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.45%2C1.1e-60%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1360 SAMTools SNP 232903 232903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1360 SAMTools SNP 233285 233285 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 233319 233319 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C196:99 scaffold1360 SAMTools SNP 233687 233687 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.019%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1360 SAMTools SNP 233727 233727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 233963 233963 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C7.2e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C234:78 scaffold1360 SAMTools SNP 235451 235451 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 236297 236297 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold1360 SAMTools SNP 236803 236803 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1360 SAMTools SNP 236804 236804 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1360 SAMTools SNP 236824 236824 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 236893 236893 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1360 SAMTools SNP 237317 237317 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1360 SAMTools SNP 237335 237335 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1360 SAMTools SNP 237621 237621 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold1360 SAMTools SNP 238408 238408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 239150 239150 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1360 SAMTools SNP 244664 244664 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 244741 244741 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1360 SAMTools SNP 247683 247683 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1360 SAMTools SNP 247756 247756 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 248303 248303 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D39%3BFQ%3D19.1%3BPV4%3D1%2C0.027%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C186:49 scaffold1360 SAMTools SNP 258790 258790 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1360 SAMTools SNP 260523 260523 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1360 SAMTools SNP 265792 265792 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 265801 265801 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 266021 266021 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 266070 266070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1360 SAMTools SNP 267232 267232 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.028%2C0.028%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1360 SAMTools SNP 267250 267250 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.098%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1360 SAMTools SNP 267340 267340 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1360 SAMTools SNP 267620 267620 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0019%2C0.03%2C1%2C5.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1360 SAMTools SNP 268611 268611 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 268662 268662 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 268683 268683 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1360 SAMTools SNP 269480 269480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C16%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D0.25%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold1360 SAMTools SNP 269495 269495 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C19%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0019%2C5.6e-10%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1360 SAMTools SNP 269912 269912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1360 SAMTools SNP 270110 270110 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1360 SAMTools SNP 270546 270546 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.45%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C169:99 scaffold1360 SAMTools SNP 270555 270555 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1360 SAMTools SNP 270579 270579 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1360 SAMTools SNP 272449 272449 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 272500 272500 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C33%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 272515 272515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 272748 272748 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C13%2C0%3BMQ%3D48%3BFQ%3D183%3BPV4%3D0.072%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1360 SAMTools SNP 272757 272757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C7%2C3%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.68%2C0.048%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 273231 273231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C58%3BMQ%3D48%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1360 SAMTools SNP 274005 274005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.13%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold1360 SAMTools SNP 274164 274164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 275696 275696 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1360 SAMTools SNP 276318 276318 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1360 SAMTools SNP 276354 276354 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1360 SAMTools SNP 276372 276372 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1360 SAMTools SNP 276695 276695 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1360 SAMTools SNP 276761 276761 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1360 SAMTools SNP 276764 276764 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1360 SAMTools SNP 277820 277820 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C36%2C12%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1360 SAMTools SNP 277854 277854 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C14%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1360 SAMTools SNP 277886 277886 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1360 SAMTools SNP 278271 278271 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1360 SAMTools SNP 278298 278298 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C23%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D1%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1360 SAMTools SNP 278376 278376 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1360 SAMTools SNP 278865 278865 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1360 SAMTools SNP 278871 278871 179 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C21%2C0%2C203%2C3%2C200:39 scaffold1360 SAMTools SNP 278907 278907 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C63%2C0:99 scaffold1360 SAMTools SNP 279349 279349 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C75%2C0:99 scaffold1360 SAMTools SNP 284309 284309 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 284874 284874 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 284882 284882 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 284932 284932 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 284968 284968 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1360 SAMTools SNP 285329 285329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1360 SAMTools SNP 286015 286015 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1360 SAMTools SNP 286033 286033 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1360 SAMTools SNP 286036 286036 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 286097 286097 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold1360 SAMTools SNP 286138 286138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1360 SAMTools SNP 286266 286266 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C1%3BMQ%3D48%3BFQ%3D145%3BPV4%3D0.029%2C0.12%2C0.15%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C219:99 scaffold1360 SAMTools SNP 287218 287218 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1360 SAMTools SNP 287230 287230 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 287335 287335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1360 SAMTools SNP 287703 287703 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1360 SAMTools SNP 296200 296200 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1360 SAMTools SNP 300588 300588 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 300750 300750 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1360 SAMTools SNP 300841 300841 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C51%2C0:99 scaffold1360 SAMTools SNP 300961 300961 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C5.9e-57%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C228:67 scaffold1360 SAMTools SNP 301125 301125 19.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1360 SAMTools SNP 301177 301177 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C25%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.4e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C248:77 scaffold1360 SAMTools SNP 301860 301860 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C20%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D3.5e-05%2C2.2e-41%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1360 SAMTools SNP 302609 302609 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1360 SAMTools SNP 303103 303103 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1360 SAMTools SNP 303157 303157 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C33%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1360 SAMTools SNP 304804 304804 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1360 SAMTools SNP 304916 304916 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D70%3BPV4%3D4.4e-07%2C8.2e-13%2C1%2C6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1360 SAMTools SNP 307951 307951 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C245:99 scaffold1360 SAMTools SNP 307973 307973 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold1360 SAMTools SNP 310667 310667 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.00049%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1360 SAMTools SNP 311013 311013 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1360 SAMTools SNP 311702 311702 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 312048 312048 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1360 SAMTools SNP 312468 312468 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C85:88 scaffold1360 SAMTools SNP 312500 312500 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1360 SAMTools SNP 314095 314095 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1360 SAMTools SNP 314404 314404 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1360 SAMTools SNP 318102 318102 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1360 SAMTools SNP 319704 319704 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 329135 329135 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C87%2C0:99 scaffold1360 SAMTools SNP 329293 329293 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1360 SAMTools SNP 332669 332669 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1360 SAMTools SNP 332690 332690 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1360 SAMTools SNP 332750 332750 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C177:36 scaffold1360 SAMTools SNP 332890 332890 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0023%2C3.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1360 SAMTools SNP 333191 333191 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C36%2C0:69 scaffold1360 SAMTools SNP 333352 333352 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C220:54 scaffold1360 SAMTools SNP 336576 336576 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.3e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C176:30 scaffold1360 SAMTools SNP 338244 338244 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1360 SAMTools SNP 344687 344687 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 354004 354004 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C4.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C104:39 scaffold1360 SAMTools SNP 354841 354841 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C33%2C4%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D5.1e-05%2C0.14%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1360 SAMTools SNP 354844 354844 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C59%2C9%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 354865 354865 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C107%2C22%2C211%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.0036%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 356256 356256 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C40%2C23%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.36%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 357197 357197 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C6%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 357907 357907 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C44%2C23%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D3.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1360 SAMTools SNP 357934 357934 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C50%2C24%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D4.6e-10%2C0.04%2C1%2C4.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1360 SAMTools SNP 358724 358724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C67%2C41%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 358743 358743 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C83%2C41%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 359380 359380 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C40%2C0%2C24%3BMQ%3D50%3BFQ%3D95%3BPV4%3D4.6e-08%2C0.37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1360 SAMTools SNP 362009 362009 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C35%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.29%2C0.053%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1360 SAMTools SNP 362024 362024 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C3%2C22%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1360 SAMTools SNP 363664 363664 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C54%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 363706 363706 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C80%2C33%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 365578 365578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C43%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1360 SAMTools SNP 365590 365590 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C52%2C3%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1360 SAMTools SNP 366462 366462 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C61%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 366501 366501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C57%2C11%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 367577 367577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C119%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C1%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 367628 367628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C97%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 373170 373170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C52%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 373205 373205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C117%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.28%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 374401 374401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C63%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1360 SAMTools SNP 376127 376127 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1360 SAMTools SNP 376160 376160 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 376165 376165 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 376199 376199 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.065%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1360 SAMTools SNP 376243 376243 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1360 SAMTools SNP 376975 376975 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1360 SAMTools SNP 383580 383580 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 383583 383583 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 383838 383838 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C240:52 scaffold1360 SAMTools SNP 384211 384211 6.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C2%2C6%2C3%3BMQ%3D28%3BFQ%3D-32%3BPV4%3D0.63%2C6.2e-11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C5%2C0:5 scaffold1360 SAMTools SNP 387157 387157 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1360 SAMTools SNP 390421 390421 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1360 SAMTools SNP 392392 392392 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 392393 392393 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 445468 445468 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1360 SAMTools SNP 445513 445513 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1360 SAMTools SNP 445884 445884 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1360 SAMTools SNP 446346 446346 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 446385 446385 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 456267 456267 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1360 SAMTools SNP 456298 456298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 456864 456864 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1360 SAMTools SNP 456904 456904 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1360 SAMTools SNP 456939 456939 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C9.7e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C245:94 scaffold1360 SAMTools SNP 456960 456960 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1360 SAMTools SNP 457164 457164 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.39%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold1360 SAMTools SNP 457702 457702 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C244:99 scaffold1360 SAMTools SNP 458958 458958 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1360 SAMTools SNP 459355 459355 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C18:43 scaffold1360 SAMTools SNP 459393 459393 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 459394 459394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 459424 459424 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1360 SAMTools SNP 459430 459430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1360 SAMTools SNP 459838 459838 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1360 SAMTools SNP 460431 460431 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1360 SAMTools SNP 460506 460506 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1360 SAMTools SNP 460798 460798 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1360 SAMTools SNP 460844 460844 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 462121 462121 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 462122 462122 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1360 SAMTools SNP 463832 463832 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1360 SAMTools SNP 464323 464323 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold1360 SAMTools SNP 464345 464345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 464652 464652 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 464673 464673 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1360 SAMTools SNP 464946 464946 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1360 SAMTools SNP 465021 465021 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1360 SAMTools SNP 465451 465451 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1360 SAMTools SNP 465715 465715 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1360 SAMTools SNP 465815 465815 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1360 SAMTools SNP 466084 466084 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1360 SAMTools SNP 466632 466632 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1360 SAMTools SNP 466693 466693 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1360 SAMTools SNP 466909 466909 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 466912 466912 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 466937 466937 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 466970 466970 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1360 SAMTools SNP 467401 467401 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1360 SAMTools SNP 559955 559955 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1360 SAMTools SNP 559984 559984 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 566591 566591 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.17%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C229:60 scaffold1360 SAMTools SNP 566917 566917 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1360 SAMTools SNP 604542 604542 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 606039 606039 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C31:32 scaffold1360 SAMTools SNP 606070 606070 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1360 SAMTools SNP 609804 609804 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 609822 609822 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 616566 616566 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1360 SAMTools SNP 617260 617260 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1360 SAMTools SNP 632582 632582 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1360 SAMTools SNP 636666 636666 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1360 SAMTools SNP 636795 636795 98.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1360 SAMTools SNP 653301 653301 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1360 SAMTools SNP 668847 668847 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C39%2C0:75 scaffold1360 SAMTools SNP 669091 669091 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1360 SAMTools SNP 669113 669113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 681603 681603 42.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1360 SAMTools SNP 691028 691028 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1360 SAMTools SNP 691035 691035 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1360 SAMTools SNP 691721 691721 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1360 SAMTools SNP 691736 691736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 695226 695226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1360 SAMTools SNP 695249 695249 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.081%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1360 SAMTools SNP 695270 695270 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1360 SAMTools SNP 695478 695478 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 695713 695713 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1360 SAMTools SNP 695855 695855 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C27%2C2%3BMQ%3D50%3BFQ%3D52.9%3BPV4%3D0.062%2C3.7e-13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C84:83 scaffold1360 SAMTools SNP 696899 696899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.41%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold1360 SAMTools SNP 696920 696920 219 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C9%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.27%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1360 SAMTools SNP 696947 696947 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1360 SAMTools SNP 699088 699088 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 700204 700204 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 700273 700273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1360 SAMTools SNP 700288 700288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1360 SAMTools SNP 700766 700766 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1360 SAMTools SNP 701211 701211 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.2%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1360 SAMTools SNP 701254 701254 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.54%2C0.00019%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1360 SAMTools SNP 701262 701262 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1360 SAMTools SNP 701896 701896 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.026%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold1360 SAMTools SNP 704184 704184 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.4%2C1.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1360 SAMTools SNP 704241 704241 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.63%2C2.8e-14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1360 SAMTools SNP 706219 706219 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1360 SAMTools SNP 706237 706237 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1360 SAMTools SNP 718118 718118 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold1360 SAMTools SNP 718130 718130 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1360 SAMTools SNP 718983 718983 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1360 SAMTools SNP 720826 720826 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1360 SAMTools SNP 720837 720837 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C32%2C27%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1.4e-05%2C5.7e-08%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1360 SAMTools SNP 720850 720850 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C86%2C8%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 720853 720853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C10%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 720880 720880 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C113%2C2%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1360 SAMTools SNP 721416 721416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C2%2C13%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1360 SAMTools SNP 721488 721488 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1360 SAMTools SNP 721491 721491 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1360 SAMTools SNP 722169 722169 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C36%2C0:69 scaffold1360 SAMTools SNP 727476 727476 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 727496 727496 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1360 SAMTools SNP 727609 727609 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1360 SAMTools SNP 731428 731428 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 731444 731444 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1360 SAMTools SNP 733326 733326 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C116:99 scaffold1360 SAMTools SNP 734860 734860 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C11%2C12%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.43%2C0.018%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1360 SAMTools SNP 735609 735609 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C2%2C5%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1360 SAMTools SNP 735662 735662 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1360 SAMTools SNP 765453 765453 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold1360 SAMTools SNP 767811 767811 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 768616 768616 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1360 SAMTools SNP 773555 773555 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1360 SAMTools SNP 773873 773873 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 773891 773891 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C27%2C0:51 scaffold1360 SAMTools SNP 775059 775059 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1360 SAMTools SNP 775078 775078 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1360 SAMTools SNP 775119 775119 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1360 SAMTools SNP 775135 775135 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1360 SAMTools SNP 775159 775159 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1360 SAMTools SNP 775632 775632 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 2301 2301 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 2444 2444 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 4897 4897 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1362 SAMTools SNP 61485 61485 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1362 SAMTools SNP 61796 61796 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1362 SAMTools SNP 62361 62361 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1362 SAMTools SNP 62659 62659 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C247:99 scaffold1362 SAMTools SNP 62792 62792 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 62797 62797 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 63681 63681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 64702 64702 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1362 SAMTools SNP 65215 65215 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1362 SAMTools SNP 65224 65224 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 76587 76587 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1362 SAMTools SNP 76610 76610 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C100:28 scaffold1362 SAMTools SNP 76645 76645 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C74:77 scaffold1362 SAMTools SNP 76657 76657 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C175:31 scaffold1362 SAMTools SNP 76660 76660 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1362 SAMTools SNP 82210 82210 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1362 SAMTools SNP 82248 82248 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 82307 82307 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1362 SAMTools SNP 82956 82956 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 83760 83760 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1362 SAMTools SNP 85430 85430 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.017%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C226:31 scaffold1362 SAMTools SNP 85437 85437 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C160:99 scaffold1362 SAMTools SNP 85467 85467 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C5.2e-07%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C253:64 scaffold1362 SAMTools SNP 86122 86122 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1362 SAMTools SNP 86158 86158 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1362 SAMTools SNP 86583 86583 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 87106 87106 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 116985 116985 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1362 SAMTools SNP 125486 125486 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1362 SAMTools SNP 130589 130589 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1362 SAMTools SNP 133872 133872 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1362 SAMTools SNP 133900 133900 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1362 SAMTools SNP 137163 137163 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C204:99 scaffold1362 SAMTools SNP 137208 137208 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1362 SAMTools SNP 137703 137703 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 137937 137937 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.091%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1362 SAMTools SNP 138812 138812 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1362 SAMTools SNP 138830 138830 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1362 SAMTools SNP 141883 141883 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1362 SAMTools SNP 142626 142626 188 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C255%2C0:99 scaffold1362 SAMTools SNP 142699 142699 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1362 SAMTools SNP 144609 144609 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C223:53 scaffold1362 SAMTools SNP 144875 144875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C18%2C245%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0054%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 147472 147472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 147492 147492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1362 SAMTools SNP 167008 167008 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C73:76 scaffold1362 SAMTools SNP 168179 168179 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.1%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C231:99 scaffold1362 SAMTools SNP 168206 168206 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.27%2C9.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1362 SAMTools SNP 169687 169687 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C51%2C5%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1362 SAMTools SNP 170446 170446 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C232:99 scaffold1362 SAMTools SNP 170589 170589 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1362 SAMTools SNP 170596 170596 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-05%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1362 SAMTools SNP 176263 176263 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C211%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 178915 178915 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D305%2C261%2C34%2C67%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1362 SAMTools SNP 179104 179104 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D346%2C105%2C167%2C13%3BMQ%3D50%3BFQ%3D190%3BPV4%3D8.4e-07%2C1%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1362 SAMTools SNP 180653 180653 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C43%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C196:81 scaffold1362 SAMTools SNP 188084 188084 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1362 SAMTools SNP 188393 188393 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C200:63 scaffold1362 SAMTools SNP 188418 188418 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1362 SAMTools SNP 188437 188437 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C157:72 scaffold1362 SAMTools SNP 189157 189157 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D47%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C135:99 scaffold1362 SAMTools SNP 189363 189363 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D46%3BFQ%3D42%3BPV4%3D1%2C1%2C0.21%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1362 SAMTools SNP 189389 189389 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1362 SAMTools SNP 191564 191564 221 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C0%2C29%3BMQ%3D49%3BFQ%3D223%3BPV4%3D1.3e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1362 SAMTools SNP 193481 193481 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1362 SAMTools SNP 193755 193755 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C8%2C11%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.044%2C6.7e-48%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1362 SAMTools SNP 193893 193893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1362 SAMTools SNP 194515 194515 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.49%2C0.4%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C215:99 scaffold1362 SAMTools SNP 194516 194516 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1362 SAMTools SNP 194526 194526 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D49%3BFQ%3D55%3BPV4%3D0.092%2C1%2C0.029%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1362 SAMTools SNP 194541 194541 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C2%2C2%3BMQ%3D49%3BFQ%3D78%3BPV4%3D0.6%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1362 SAMTools SNP 194663 194663 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C1%2C3%3BMQ%3D49%3BFQ%3D67%3BPV4%3D0.076%2C0.23%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1362 SAMTools SNP 194681 194681 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 195012 195012 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C96%2C0:99 scaffold1362 SAMTools SNP 198762 198762 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C17%2C0%3BMQ%3D40%3BFQ%3D7.8%3BPV4%3D0.37%2C2.1e-21%2C0.00063%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C233:34 scaffold1362 SAMTools SNP 198770 198770 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C13%2C0%3BMQ%3D43%3BFQ%3D18.1%3BPV4%3D1%2C2.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C227:48 scaffold1362 SAMTools SNP 199069 199069 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1362 SAMTools SNP 200940 200940 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.083%2C7.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C109:58 scaffold1362 SAMTools SNP 201313 201313 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1362 SAMTools SNP 203428 203428 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D10.3%3BPV4%3D1%2C0.0068%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C39:40 scaffold1362 SAMTools SNP 204686 204686 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1362 SAMTools SNP 209227 209227 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1362 SAMTools SNP 209257 209257 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C62%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 209901 209901 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C10%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00067%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 210376 210376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 211002 211002 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.26%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C245:99 scaffold1362 SAMTools SNP 211021 211021 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1362 SAMTools SNP 211331 211331 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1362 SAMTools SNP 211358 211358 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 211361 211361 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1362 SAMTools SNP 211656 211656 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 211758 211758 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 213697 213697 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1362 SAMTools SNP 215630 215630 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C246:99 scaffold1362 SAMTools SNP 215824 215824 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1362 SAMTools SNP 216691 216691 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 216957 216957 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D73%3BPV4%3D2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1362 SAMTools SNP 219369 219369 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 219741 219741 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1362 SAMTools SNP 219799 219799 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 220087 220087 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1362 SAMTools SNP 221715 221715 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1362 SAMTools SNP 227505 227505 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1362 SAMTools SNP 227526 227526 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 227553 227553 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1362 SAMTools SNP 227557 227557 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C182:30 scaffold1362 SAMTools SNP 227577 227577 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1362 SAMTools SNP 227804 227804 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.014%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1362 SAMTools SNP 227805 227805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.014%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1362 SAMTools SNP 228198 228198 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.59%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1362 SAMTools SNP 228440 228440 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C10%2C15%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1362 SAMTools SNP 228453 228453 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1362 SAMTools SNP 272874 272874 28.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1362 SAMTools SNP 274596 274596 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 274630 274630 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C289%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 276399 276399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 276404 276404 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold1362 SAMTools SNP 276919 276919 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1362 SAMTools SNP 276951 276951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1362 SAMTools SNP 277863 277863 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 278088 278088 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1362 SAMTools SNP 278172 278172 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1362 SAMTools SNP 278220 278220 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.053%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1362 SAMTools SNP 278444 278444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1362 SAMTools SNP 278522 278522 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C0.00069%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1362 SAMTools SNP 278582 278582 52.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1362 SAMTools SNP 278600 278600 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1362 SAMTools SNP 278837 278837 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1362 SAMTools SNP 278870 278870 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1362 SAMTools SNP 279005 279005 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 279355 279355 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 279517 279517 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 279625 279625 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C18%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.44%2C6.9e-24%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1362 SAMTools SNP 279682 279682 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C18%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.44%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1362 SAMTools SNP 280104 280104 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C245:99 scaffold1362 SAMTools SNP 280995 280995 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D34%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C39%2C0:75 scaffold1362 SAMTools SNP 282921 282921 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C23%2C13%3BMQ%3D39%3BFQ%3D181%3BPV4%3D0.00038%2C0.02%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1362 SAMTools SNP 283584 283584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C10%2C28%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.012%2C1%2C0.00029%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 283617 283617 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C8%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1362 SAMTools SNP 312829 312829 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C3%3BMQ%3D39%3BFQ%3D119%3BPV4%3D1%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C146:99 scaffold1362 SAMTools SNP 313689 313689 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.19%2C0.0091%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1362 SAMTools SNP 313785 313785 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.23%2C0.0083%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1362 SAMTools SNP 314339 314339 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1362 SAMTools SNP 315746 315746 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C110:90 scaffold1362 SAMTools SNP 315781 315781 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 315834 315834 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 315969 315969 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 316309 316309 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold1362 SAMTools SNP 318983 318983 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1362 SAMTools SNP 319020 319020 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C1%2C19%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.5%2C0.11%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1362 SAMTools SNP 320538 320538 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C12%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C7e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321140 321140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C17%2C73%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-05%2C0.046%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321191 321191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C63%2C41%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321269 321269 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C3%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321375 321375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C83%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321525 321525 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C33%2C0:63 scaffold1362 SAMTools SNP 321836 321836 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 321928 321928 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 322081 322081 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.57%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C217:99 scaffold1362 SAMTools SNP 322108 322108 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.38%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1362 SAMTools SNP 322311 322311 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C148%2C0:99 scaffold1362 SAMTools SNP 322786 322786 8.44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1362 SAMTools SNP 322968 322968 34.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1362 SAMTools SNP 323319 323319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1362 SAMTools SNP 323484 323484 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C21%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C8.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1362 SAMTools SNP 323516 323516 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C7%2C14%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.28%2C2.6e-43%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1362 SAMTools SNP 323826 323826 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D35%3BFQ%3D115%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C142:99 scaffold1362 SAMTools SNP 324420 324420 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1362 SAMTools SNP 324547 324547 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1362 SAMTools SNP 324610 324610 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.37%2C1.2e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C158:47 scaffold1362 SAMTools SNP 324631 324631 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.36%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1362 SAMTools SNP 324650 324650 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1362 SAMTools SNP 324892 324892 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1362 SAMTools SNP 326472 326472 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1362 SAMTools SNP 326510 326510 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold1362 SAMTools SNP 326716 326716 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1362 SAMTools SNP 326737 326737 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C30%2C0:57 scaffold1362 SAMTools SNP 326749 326749 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1362 SAMTools SNP 326752 326752 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 326756 326756 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1362 SAMTools SNP 327085 327085 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 332176 332176 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C17%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.47%2C9.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1362 SAMTools SNP 332541 332541 67.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold1362 SAMTools SNP 332908 332908 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.3e-20%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C113:51 scaffold1362 SAMTools SNP 333200 333200 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C48%2C0:93 scaffold1362 SAMTools SNP 344931 344931 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.53%2C0.0011%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1362 SAMTools SNP 345860 345860 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 346184 346184 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 346662 346662 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 346689 346689 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 347097 347097 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C163:96 scaffold1362 SAMTools SNP 347616 347616 34.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1362 SAMTools SNP 348067 348067 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 348222 348222 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1362 SAMTools SNP 348258 348258 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C38:41 scaffold1362 SAMTools SNP 348501 348501 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1362 SAMTools SNP 350584 350584 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1362 SAMTools SNP 350883 350883 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1362 SAMTools SNP 350898 350898 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 350955 350955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1362 SAMTools SNP 350967 350967 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1362 SAMTools SNP 351236 351236 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1362 SAMTools SNP 351314 351314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1362 SAMTools SNP 351677 351677 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1362 SAMTools SNP 351772 351772 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1362 SAMTools SNP 351802 351802 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1362 SAMTools SNP 352668 352668 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1362 SAMTools SNP 352683 352683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 352692 352692 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 352707 352707 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 353322 353322 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1362 SAMTools SNP 353363 353363 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1362 SAMTools SNP 353613 353613 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C145:99 scaffold1362 SAMTools SNP 353655 353655 113 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold1362 SAMTools SNP 353780 353780 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 356173 356173 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 356607 356607 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C202:70 scaffold1362 SAMTools SNP 356750 356750 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1362 SAMTools SNP 357118 357118 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 357199 357199 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1362 SAMTools SNP 357519 357519 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 357525 357525 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 357600 357600 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 358814 358814 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1362 SAMTools SNP 358877 358877 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 358913 358913 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1362 SAMTools SNP 359733 359733 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1362 SAMTools SNP 359736 359736 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 359739 359739 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 360117 360117 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1362 SAMTools SNP 360144 360144 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1362 SAMTools SNP 360473 360473 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1362 SAMTools SNP 360846 360846 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 361632 361632 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1362 SAMTools SNP 362133 362133 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1362 SAMTools SNP 362136 362136 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1362 SAMTools SNP 362418 362418 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1362 SAMTools SNP 362421 362421 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1362 SAMTools SNP 362936 362936 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold1362 SAMTools SNP 362948 362948 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold1362 SAMTools SNP 362981 362981 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.14%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C110:50 scaffold1362 SAMTools SNP 363062 363062 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C198:42 scaffold1362 SAMTools SNP 364207 364207 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1362 SAMTools SNP 364222 364222 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1362 SAMTools SNP 364514 364514 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1362 SAMTools SNP 364538 364538 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1362 SAMTools SNP 364779 364779 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 364809 364809 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1362 SAMTools SNP 365044 365044 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1362 SAMTools SNP 365074 365074 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1362 SAMTools SNP 365086 365086 205 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17%2C218%2C0%2C215:57 scaffold1362 SAMTools SNP 365609 365609 58.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1362 SAMTools SNP 365659 365659 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1362 SAMTools SNP 367242 367242 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1362 SAMTools SNP 369158 369158 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1362 SAMTools SNP 370587 370587 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1362 SAMTools SNP 371299 371299 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1362 SAMTools SNP 371820 371820 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1362 SAMTools SNP 371883 371883 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1362 SAMTools SNP 372459 372459 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 372462 372462 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1362 SAMTools SNP 372831 372831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1362 SAMTools SNP 373187 373187 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold1362 SAMTools SNP 373256 373256 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold1362 SAMTools SNP 373327 373327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1362 SAMTools SNP 374059 374059 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1362 SAMTools SNP 374125 374125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 374413 374413 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1362 SAMTools SNP 375208 375208 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1362 SAMTools SNP 375244 375244 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C5.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C247:99 scaffold1362 SAMTools SNP 375277 375277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1362 SAMTools SNP 375319 375319 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.56%2C2.7e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1362 SAMTools SNP 379048 379048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C55%2C22%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 379352 379352 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 379674 379674 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 379755 379755 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.099%2C3.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C241:39 scaffold1362 SAMTools SNP 379806 379806 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1362 SAMTools SNP 380047 380047 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.54%2C0.017%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1362 SAMTools SNP 380053 380053 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1362 SAMTools SNP 380056 380056 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D91.6%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C120:99 scaffold1362 SAMTools SNP 380203 380203 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1362 SAMTools SNP 383134 383134 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C14%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.014%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1362 SAMTools SNP 383174 383174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1362 SAMTools SNP 383699 383699 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 384028 384028 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C54%2C0:99 scaffold1362 SAMTools SNP 384355 384355 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1362 SAMTools SNP 384409 384409 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1362 SAMTools SNP 384571 384571 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 386126 386126 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1362 SAMTools SNP 386582 386582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 386626 386626 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1362 SAMTools SNP 386696 386696 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.28%2C0.035%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1362 SAMTools SNP 387098 387098 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold1362 SAMTools SNP 387173 387173 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1362 SAMTools SNP 391941 391941 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 391987 391987 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 392673 392673 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 393573 393573 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1362 SAMTools SNP 394023 394023 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1362 SAMTools SNP 394101 394101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 394714 394714 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.081%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 394804 394804 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.057%2C0.0014%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C224:93 scaffold1362 SAMTools SNP 395125 395125 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1362 SAMTools SNP 395161 395161 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1362 SAMTools SNP 395192 395192 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1362 SAMTools SNP 395602 395602 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1362 SAMTools SNP 396887 396887 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1362 SAMTools SNP 398128 398128 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1362 SAMTools SNP 398134 398134 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0016%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1362 SAMTools SNP 398464 398464 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.043%2C0.21%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1362 SAMTools SNP 398470 398470 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.043%2C0.25%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1362 SAMTools SNP 398491 398491 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C17%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.21%2C0.41%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1362 SAMTools SNP 398503 398503 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C15%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.076%2C0.14%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1362 SAMTools SNP 398526 398526 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.52%2C0.014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1362 SAMTools SNP 398535 398535 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00034%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1362 SAMTools SNP 398566 398566 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.00059%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1362 SAMTools SNP 399046 399046 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.00059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1362 SAMTools SNP 399090 399090 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.035%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C229:99 scaffold1362 SAMTools SNP 419923 419923 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1362 SAMTools SNP 445733 445733 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1362 SAMTools SNP 445811 445811 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1362 SAMTools SNP 446002 446002 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 464737 464737 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1362 SAMTools SNP 464826 464826 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1362 SAMTools SNP 471615 471615 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C1%3BMQ%3D37%3BFQ%3D105%3BPV4%3D0.32%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C170:99 scaffold1362 SAMTools SNP 471627 471627 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C5%2C0%3BMQ%3D39%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C188:99 scaffold1362 SAMTools SNP 471699 471699 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C1%2C7%3BMQ%3D49%3BFQ%3D43%3BPV4%3D0.0085%2C6.8e-07%2C0.063%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1362 SAMTools SNP 471767 471767 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C4%3BMQ%3D41%3BFQ%3D64%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C245:94 scaffold1362 SAMTools SNP 472228 472228 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C1%2C3%3BMQ%3D41%3BFQ%3D51%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C209:81 scaffold1362 SAMTools SNP 472267 472267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 472297 472297 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 485212 485212 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C99:66 scaffold1362 SAMTools SNP 491316 491316 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1362 SAMTools SNP 515180 515180 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 515204 515204 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 515641 515641 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 527892 527892 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1362 SAMTools SNP 528023 528023 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D48%3BFQ%3D-10.4%3BPV4%3D1%2C0.48%2C0.38%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C17:20 scaffold1362 SAMTools SNP 528267 528267 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 528351 528351 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1362 SAMTools SNP 532822 532822 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C126:82 scaffold1362 SAMTools SNP 533752 533752 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold1362 SAMTools SNP 534242 534242 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.048%2C3.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C179:46 scaffold1362 SAMTools SNP 535724 535724 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C0.00067%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold1362 SAMTools SNP 535797 535797 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.57%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C214:54 scaffold1362 SAMTools SNP 536256 536256 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1362 SAMTools SNP 537114 537114 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C23%3BMQ%3D49%3BFQ%3D73%3BPV4%3D1%2C7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C177:99 scaffold1362 SAMTools SNP 537188 537188 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C5%3BMQ%3D49%3BFQ%3D160%3BPV4%3D0.05%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1362 SAMTools SNP 537202 537202 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.017%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1362 SAMTools SNP 537237 537237 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1362 SAMTools SNP 537874 537874 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C236:93 scaffold1362 SAMTools SNP 538631 538631 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1362 SAMTools SNP 539032 539032 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1362 SAMTools SNP 545460 545460 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold1362 SAMTools SNP 545486 545486 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 546325 546325 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C31%2C6%2C3%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.0019%2C1.9e-14%2C0.15%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1362 SAMTools SNP 547018 547018 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1362 SAMTools SNP 549177 549177 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold1362 SAMTools SNP 549195 549195 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1362 SAMTools SNP 549447 549447 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00049%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1362 SAMTools SNP 550111 550111 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1362 SAMTools SNP 563481 563481 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D48%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1362 SAMTools SNP 563526 563526 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C1%2C1%3BMQ%3D49%3BFQ%3D10.4%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1362 SAMTools SNP 563733 563733 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C5%2C16%2C35%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.31%2C1.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C21:24 scaffold1362 SAMTools SNP 563810 563810 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C42%2C0:81 scaffold1362 SAMTools SNP 563832 563832 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C6.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C206:41 scaffold1362 SAMTools SNP 563897 563897 3.02 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1362 SAMTools SNP 574300 574300 56.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold1362 SAMTools SNP 603411 603411 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 603458 603458 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 611519 611519 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1362 SAMTools SNP 612887 612887 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1362 SAMTools SNP 613386 613386 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C72%2C74%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D4.9e-24%2C2.8e-38%2C1%2C4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1362 SAMTools SNP 614487 614487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1362 SAMTools SNP 614501 614501 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1362 SAMTools SNP 616066 616066 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1362 SAMTools SNP 616081 616081 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1362 SAMTools SNP 620920 620920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 621744 621744 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 621771 621771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 624479 624479 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1362 SAMTools SNP 628420 628420 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1362 SAMTools SNP 629129 629129 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C4.6e-13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1362 SAMTools SNP 629445 629445 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.6%2C2.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1362 SAMTools SNP 641742 641742 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold1362 SAMTools SNP 642358 642358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 642423 642423 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C30%2C33%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1e-05%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1362 SAMTools SNP 642875 642875 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C32%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.48%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 643058 643058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C35%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 648033 648033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 648156 648156 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C4%2C12%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C2e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1362 SAMTools SNP 653565 653565 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C20%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1362 SAMTools SNP 658833 658833 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C0.33%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 674049 674049 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C87%2C1%2C49%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.36%2C2.3e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1362 SAMTools SNP 691846 691846 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C2%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1362 SAMTools SNP 693333 693333 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 693979 693979 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.56%2C5.5e-05%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1362 SAMTools SNP 694628 694628 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1362 SAMTools SNP 694661 694661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1362 SAMTools SNP 694845 694845 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1362 SAMTools SNP 695766 695766 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 695787 695787 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 715431 715431 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 723298 723298 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.42%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1362 SAMTools SNP 729724 729724 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.23%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1362 SAMTools SNP 738351 738351 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C4.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C234:99 scaffold1362 SAMTools SNP 739007 739007 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C6%2C39%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1362 SAMTools SNP 739064 739064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C75%2C15%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 739082 739082 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C86%2C15%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 739240 739240 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C64%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 739493 739493 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C25%2C7%2C14%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1362 SAMTools SNP 739850 739850 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C42%2C4%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.022%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1362 SAMTools SNP 739943 739943 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C141:99 scaffold1362 SAMTools SNP 739949 739949 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1362 SAMTools SNP 739979 739979 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C6%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00036%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1362 SAMTools SNP 740481 740481 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C67%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.002%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C63:66 scaffold1362 SAMTools SNP 740503 740503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 740808 740808 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1362 SAMTools SNP 740832 740832 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 741270 741270 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 741688 741688 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.11%2C0.0043%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1362 SAMTools SNP 744612 744612 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1362 SAMTools SNP 745151 745151 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D54.5%3BPV4%3D1%2C4.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C85:84 scaffold1362 SAMTools SNP 745388 745388 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 749244 749244 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1362 SAMTools SNP 749414 749414 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.049%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1362 SAMTools SNP 749426 749426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1362 SAMTools SNP 749986 749986 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1362 SAMTools SNP 750045 750045 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 755027 755027 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1362 SAMTools SNP 755584 755584 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1362 SAMTools SNP 758741 758741 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1362 SAMTools SNP 759180 759180 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1362 SAMTools SNP 759951 759951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C7%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1362 SAMTools SNP 763823 763823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.066%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 763968 763968 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1362 SAMTools SNP 764375 764375 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1362 SAMTools SNP 764489 764489 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.28%2C4.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1362 SAMTools SNP 764609 764609 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1362 SAMTools SNP 765132 765132 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1362 SAMTools SNP 765456 765456 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.44%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 765710 765710 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C48%2C17%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1362 SAMTools SNP 766053 766053 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C51%2C0%2C22%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00066%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1362 SAMTools SNP 766121 766121 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C2%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.59%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1362 SAMTools SNP 766576 766576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1362 SAMTools SNP 766873 766873 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D48.4%3BPV4%3D0.33%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C84:78 scaffold1362 SAMTools SNP 766874 766874 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1362 SAMTools SNP 768993 768993 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C12%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D8.5e-10%2C1.7e-20%2C1%2C4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1362 SAMTools SNP 769228 769228 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1362 SAMTools SNP 770220 770220 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1362 SAMTools SNP 770301 770301 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold1362 SAMTools SNP 770466 770466 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C45%2C0:87 scaffold1362 SAMTools SNP 798750 798750 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 798818 798818 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.4%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1362 SAMTools SNP 799311 799311 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1362 SAMTools SNP 799654 799654 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 799694 799694 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1362 SAMTools SNP 804267 804267 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1362 SAMTools SNP 805199 805199 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 818945 818945 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1362 SAMTools SNP 820057 820057 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 820075 820075 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 820871 820871 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1362 SAMTools SNP 820882 820882 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1362 SAMTools SNP 820946 820946 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C10%3BMQ%3D50%3BFQ%3D45.8%3BPV4%3D0.54%2C7.5e-18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C79:76 scaffold1362 SAMTools SNP 821039 821039 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1362 SAMTools SNP 821168 821168 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1362 SAMTools SNP 832641 832641 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 833344 833344 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1362 SAMTools SNP 833635 833635 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.065%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C164:99 scaffold1362 SAMTools SNP 834238 834238 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1362 SAMTools SNP 835242 835242 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 835251 835251 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1362 SAMTools SNP 862601 862601 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1362 SAMTools SNP 864106 864106 98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C38:41 scaffold1362 SAMTools SNP 864108 864108 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1362 SAMTools SNP 874924 874924 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1362 SAMTools SNP 875268 875268 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.68%3BPV4%3D1%2C3.8e-07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C26:30 scaffold1362 SAMTools SNP 893033 893033 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1366 SAMTools SNP 12528 12528 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 12537 12537 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 27365 27365 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1366 SAMTools SNP 32402 32402 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D1%2C0.0056%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C80:68 scaffold1366 SAMTools SNP 32822 32822 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1366 SAMTools SNP 37232 37232 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C118:30 scaffold1366 SAMTools SNP 37240 37240 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1366 SAMTools SNP 37326 37326 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1366 SAMTools SNP 38049 38049 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1366 SAMTools SNP 38705 38705 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C24%2C0:45 scaffold1366 SAMTools SNP 38712 38712 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold1366 SAMTools SNP 38745 38745 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C48%2C0:93 scaffold1366 SAMTools SNP 40875 40875 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1366 SAMTools SNP 40899 40899 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1366 SAMTools SNP 42447 42447 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C0%2C100%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.3e-05%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1366 SAMTools SNP 42803 42803 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C3.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1366 SAMTools SNP 43307 43307 11.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1366 SAMTools SNP 44244 44244 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1366 SAMTools SNP 44420 44420 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.2%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C228:37 scaffold1366 SAMTools SNP 44446 44446 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1366 SAMTools SNP 46462 46462 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1366 SAMTools SNP 46492 46492 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C18%2C0:33 scaffold1366 SAMTools SNP 46582 46582 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C71:49 scaffold1366 SAMTools SNP 46642 46642 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 51569 51569 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 54006 54006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.14%2C0.19%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1366 SAMTools SNP 54168 54168 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C0%2C23%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0082%2C9.4e-06%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1366 SAMTools SNP 54517 54517 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C6%2C30%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1366 SAMTools SNP 54896 54896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1366 SAMTools SNP 57668 57668 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1366 SAMTools SNP 57734 57734 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D1%2C0.00079%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold1366 SAMTools SNP 68562 68562 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1366 SAMTools SNP 73827 73827 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C54%2C0:99 scaffold1366 SAMTools SNP 74565 74565 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C37%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1366 SAMTools SNP 79089 79089 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C30%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-05%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1366 SAMTools SNP 79170 79170 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C2%2C10%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1366 SAMTools SNP 79179 79179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C48%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1366 SAMTools SNP 84046 84046 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D42%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1366 SAMTools SNP 84058 84058 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C5%3BMQ%3D44%3BFQ%3D22%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C251:52 scaffold1366 SAMTools SNP 84475 84475 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C25%2C1%3BMQ%3D48%3BFQ%3D220%3BPV4%3D0.19%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1366 SAMTools SNP 84803 84803 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.17%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C168:33 scaffold1366 SAMTools SNP 86518 86518 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.56%2C0.00014%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1366 SAMTools SNP 86983 86983 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C57%2C0:99 scaffold1366 SAMTools SNP 87067 87067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1366 SAMTools SNP 87814 87814 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C0:69 scaffold1366 SAMTools SNP 88717 88717 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1366 SAMTools SNP 89128 89128 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C69%2C0:99 scaffold1366 SAMTools SNP 89226 89226 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold1366 SAMTools SNP 89232 89232 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C217:99 scaffold1366 SAMTools SNP 89286 89286 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1366 SAMTools SNP 110564 110564 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1366 SAMTools SNP 111337 111337 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1366 SAMTools SNP 119993 119993 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C255%2C0:99 scaffold1366 SAMTools SNP 121791 121791 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1366 SAMTools SNP 121820 121820 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1366 SAMTools SNP 123938 123938 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1366 SAMTools SNP 126094 126094 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold1366 SAMTools SNP 126658 126658 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1366 SAMTools SNP 128004 128004 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold1366 SAMTools SNP 135598 135598 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C73:76 scaffold1366 SAMTools SNP 135613 135613 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.1%2C0.012%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1366 SAMTools SNP 136001 136001 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1366 SAMTools SNP 136091 136091 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1366 SAMTools SNP 137039 137039 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.56%2C0.00096%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1366 SAMTools SNP 140415 140415 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00024%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C48:51 scaffold1366 SAMTools SNP 155342 155342 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 164006 164006 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C11%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0013%2C1.2e-06%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1366 SAMTools SNP 164013 164013 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.018%2C0.00049%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1366 SAMTools SNP 164398 164398 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C75%2C0:99 scaffold1366 SAMTools SNP 173586 173586 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1366 SAMTools SNP 173772 173772 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1366 SAMTools SNP 173774 173774 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1366 SAMTools SNP 175710 175710 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1366 SAMTools SNP 176033 176033 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 176066 176066 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00034%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1366 SAMTools SNP 177041 177041 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1366 SAMTools SNP 177324 177324 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.3%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C71:74 scaffold1366 SAMTools SNP 177367 177367 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1366 SAMTools SNP 178641 178641 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1366 SAMTools SNP 179632 179632 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1366 SAMTools SNP 192061 192061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1366 SAMTools SNP 192091 192091 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1366 SAMTools SNP 192427 192427 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold1366 SAMTools SNP 192736 192736 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1366 SAMTools SNP 192811 192811 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1366 SAMTools SNP 192977 192977 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1366 SAMTools SNP 194019 194019 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1366 SAMTools SNP 194058 194058 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1366 SAMTools SNP 194088 194088 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1366 SAMTools SNP 197457 197457 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1366 SAMTools SNP 197599 197599 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1366 SAMTools SNP 197825 197825 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C8.8e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C174:99 scaffold1366 SAMTools SNP 201649 201649 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 201942 201942 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.077%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C147:46 scaffold1366 SAMTools SNP 201944 201944 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.066%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C147:46 scaffold1366 SAMTools SNP 201964 201964 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1366 SAMTools SNP 201982 201982 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1366 SAMTools SNP 210232 210232 49.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1366 SAMTools SNP 223090 223090 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1366 SAMTools SNP 224013 224013 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1366 SAMTools SNP 224112 224112 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C36%2C0:61 scaffold1366 SAMTools SNP 224328 224328 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1366 SAMTools SNP 227104 227104 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1366 SAMTools SNP 229832 229832 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1366 SAMTools SNP 234409 234409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1366 SAMTools SNP 234436 234436 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1366 SAMTools SNP 252371 252371 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1366 SAMTools SNP 252485 252485 57.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold1366 SAMTools SNP 255800 255800 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.6%2C0.079%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1366 SAMTools SNP 256284 256284 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1366 SAMTools SNP 262705 262705 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.048%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C153:30 scaffold1366 SAMTools SNP 262890 262890 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1366 SAMTools SNP 262935 262935 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.056%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C205:67 scaffold1366 SAMTools SNP 266143 266143 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1366 SAMTools SNP 274044 274044 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1366 SAMTools SNP 274070 274070 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1366 SAMTools SNP 275947 275947 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1366 SAMTools SNP 275953 275953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1366 SAMTools SNP 294226 294226 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.055%2C0.0013%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C246:37 scaffold1366 SAMTools SNP 294773 294773 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.029%2C1.3e-05%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C136:67 scaffold1366 SAMTools SNP 294803 294803 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1366 SAMTools SNP 304755 304755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1366 SAMTools SNP 308514 308514 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1366 SAMTools SNP 308537 308537 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1366 SAMTools SNP 316830 316830 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1367 SAMTools SNP 111870 111870 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1371 SAMTools SNP 8679 8679 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold1371 SAMTools SNP 8746 8746 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C75%2C0:99 scaffold1371 SAMTools SNP 8830 8830 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1371 SAMTools SNP 9149 9149 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C0:69 scaffold1371 SAMTools SNP 10811 10811 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C45%2C0:87 scaffold1371 SAMTools SNP 31071 31071 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C141:99 scaffold1371 SAMTools SNP 32376 32376 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 32446 32446 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1371 SAMTools SNP 35843 35843 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C124:31 scaffold1371 SAMTools SNP 40398 40398 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C134%2C14%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.099%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 41255 41255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1371 SAMTools SNP 41321 41321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 41351 41351 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C20%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.02%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 42060 42060 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C45%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.38%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 42066 42066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C29%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1371 SAMTools SNP 42300 42300 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 42366 42366 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1371 SAMTools SNP 42706 42706 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 42709 42709 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C29%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.47%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 42727 42727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C10%2C24%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 43760 43760 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C52%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1371 SAMTools SNP 43832 43832 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1371 SAMTools SNP 44943 44943 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C59%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 45000 45000 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 45021 45021 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.4%2C0.11%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 45620 45620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C13%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.36%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 45674 45674 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C7%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1371 SAMTools SNP 46221 46221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C22%2C105%2C30%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1371 SAMTools SNP 48048 48048 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C133%2C41%2C4%3BMQ%3D45%3BFQ%3D112%3BPV4%3D4e-16%2C0.0059%2C1%2C4.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1371 SAMTools SNP 50149 50149 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C21%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 5859 5859 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1372 SAMTools SNP 6432 6432 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1372 SAMTools SNP 65926 65926 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 65948 65948 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 68237 68237 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C144%2C0:99 scaffold1372 SAMTools SNP 69024 69024 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C26%2C11%2C4%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D0.012%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1372 SAMTools SNP 69308 69308 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D29%3BFQ%3D-6.02%3BPV4%3D1%2C0.02%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C23:26 scaffold1372 SAMTools SNP 118429 118429 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1372 SAMTools SNP 119145 119145 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C36:37 scaffold1372 SAMTools SNP 119272 119272 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1372 SAMTools SNP 119898 119898 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1372 SAMTools SNP 128712 128712 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1372 SAMTools SNP 132972 132972 40.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1372 SAMTools SNP 133320 133320 194 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1372 SAMTools SNP 133914 133914 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.25%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1372 SAMTools SNP 135062 135062 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C32:35 scaffold1372 SAMTools SNP 136036 136036 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 136068 136068 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1372 SAMTools SNP 137546 137546 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 137579 137579 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 137956 137956 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1372 SAMTools SNP 138328 138328 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1372 SAMTools SNP 138804 138804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1372 SAMTools SNP 142204 142204 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1372 SAMTools SNP 142706 142706 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C252:99 scaffold1372 SAMTools SNP 142909 142909 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.036%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1372 SAMTools SNP 143388 143388 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1372 SAMTools SNP 143562 143562 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D92.3%3BPV4%3D0.14%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C124:99 scaffold1372 SAMTools SNP 144134 144134 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold1372 SAMTools SNP 144163 144163 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1372 SAMTools SNP 147457 147457 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C0.4%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1372 SAMTools SNP 147470 147470 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.38%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 147515 147515 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.63%2C0.039%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1372 SAMTools SNP 154866 154866 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1372 SAMTools SNP 154913 154913 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.21%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C180:93 scaffold1372 SAMTools SNP 183361 183361 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C24%2C0:45 scaffold1372 SAMTools SNP 184695 184695 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1372 SAMTools SNP 186993 186993 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1372 SAMTools SNP 203000 203000 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C233:99 scaffold1372 SAMTools SNP 203180 203180 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C26%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C180:99 scaffold1372 SAMTools SNP 203192 203192 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C243:99 scaffold1372 SAMTools SNP 204212 204212 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1372 SAMTools SNP 204636 204636 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C39:42 scaffold1372 SAMTools SNP 204650 204650 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1372 SAMTools SNP 204679 204679 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D47%3BFQ%3D94%3BPV4%3D1%2C0.35%2C0.18%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C154:99 scaffold1372 SAMTools SNP 205651 205651 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C84:87 scaffold1372 SAMTools SNP 206061 206061 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1372 SAMTools SNP 206088 206088 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 206147 206147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1372 SAMTools SNP 206175 206175 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1372 SAMTools SNP 207858 207858 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 208030 208030 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1372 SAMTools SNP 208326 208326 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1372 SAMTools SNP 209318 209318 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1372 SAMTools SNP 209582 209582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1372 SAMTools SNP 209749 209749 84.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1372 SAMTools SNP 210060 210060 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1372 SAMTools SNP 210186 210186 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.056%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1372 SAMTools SNP 210462 210462 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.038%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C91:39 scaffold1372 SAMTools SNP 210478 210478 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1372 SAMTools SNP 210752 210752 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold1372 SAMTools SNP 211365 211365 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1372 SAMTools SNP 211374 211374 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1372 SAMTools SNP 212045 212045 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1372 SAMTools SNP 212962 212962 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1372 SAMTools SNP 213019 213019 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1372 SAMTools SNP 213280 213280 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C104:99 scaffold1372 SAMTools SNP 213313 213313 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1372 SAMTools SNP 213409 213409 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1372 SAMTools SNP 213427 213427 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1372 SAMTools SNP 213433 213433 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 213684 213684 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1372 SAMTools SNP 213933 213933 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold1372 SAMTools SNP 214157 214157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1372 SAMTools SNP 214367 214367 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.036%2C0.079%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C170:59 scaffold1372 SAMTools SNP 214502 214502 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C220:99 scaffold1372 SAMTools SNP 214667 214667 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.39%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C242:99 scaffold1372 SAMTools SNP 214721 214721 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.4%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1372 SAMTools SNP 214754 214754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1372 SAMTools SNP 216439 216439 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.042%2C6.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C228:75 scaffold1372 SAMTools SNP 216780 216780 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1372 SAMTools SNP 216999 216999 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C115:99 scaffold1372 SAMTools SNP 217644 217644 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C24%2C0:45 scaffold1372 SAMTools SNP 217740 217740 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.051%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold1372 SAMTools SNP 217890 217890 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1372 SAMTools SNP 218004 218004 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.2%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C143:99 scaffold1372 SAMTools SNP 219064 219064 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.071%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1372 SAMTools SNP 219100 219100 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C238:99 scaffold1372 SAMTools SNP 220498 220498 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C0.058%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C247:99 scaffold1372 SAMTools SNP 220916 220916 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.018%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1372 SAMTools SNP 220942 220942 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.28%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1372 SAMTools SNP 220946 220946 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1372 SAMTools SNP 221663 221663 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold1372 SAMTools SNP 221693 221693 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C212:99 scaffold1372 SAMTools SNP 222112 222112 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 222114 222114 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 222264 222264 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1372 SAMTools SNP 222270 222270 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1372 SAMTools SNP 222471 222471 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1372 SAMTools SNP 222483 222483 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1372 SAMTools SNP 223201 223201 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1372 SAMTools SNP 223446 223446 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold1372 SAMTools SNP 223453 223453 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C118:99 scaffold1372 SAMTools SNP 223696 223696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1372 SAMTools SNP 224073 224073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1372 SAMTools SNP 224387 224387 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1372 SAMTools SNP 224426 224426 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1372 SAMTools SNP 225119 225119 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C105%2C0:99 scaffold1372 SAMTools SNP 225140 225140 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 225617 225617 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1372 SAMTools SNP 225641 225641 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1372 SAMTools SNP 225710 225710 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C17%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.36%2C3.5e-24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1372 SAMTools SNP 225899 225899 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1372 SAMTools SNP 226071 226071 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C199:80 scaffold1372 SAMTools SNP 226665 226665 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.087%2C2.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C38:41 scaffold1372 SAMTools SNP 226710 226710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1372 SAMTools SNP 227119 227119 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C3%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1372 SAMTools SNP 227407 227407 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.4%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1372 SAMTools SNP 227458 227458 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1372 SAMTools SNP 227861 227861 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1372 SAMTools SNP 228539 228539 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C168:31 scaffold1372 SAMTools SNP 229049 229049 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1372 SAMTools SNP 229134 229134 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1372 SAMTools SNP 229159 229159 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1372 SAMTools SNP 229162 229162 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1372 SAMTools SNP 229817 229817 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1372 SAMTools SNP 229898 229898 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1372 SAMTools SNP 230113 230113 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C158:71 scaffold1372 SAMTools SNP 230414 230414 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.07%2C0.091%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1372 SAMTools SNP 230424 230424 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.43%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C172:47 scaffold1372 SAMTools SNP 230438 230438 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.52%2C0.007%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C212:68 scaffold1372 SAMTools SNP 230548 230548 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0076%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1372 SAMTools SNP 230580 230580 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1372 SAMTools SNP 230989 230989 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1372 SAMTools SNP 231031 231031 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C30%2C0:57 scaffold1372 SAMTools SNP 231829 231829 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C9%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.49%2C2.4e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1372 SAMTools SNP 231938 231938 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.009%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1372 SAMTools SNP 231946 231946 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1372 SAMTools SNP 232633 232633 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.25%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1372 SAMTools SNP 234206 234206 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 235274 235274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1372 SAMTools SNP 236217 236217 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.073%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1372 SAMTools SNP 236872 236872 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1372 SAMTools SNP 236919 236919 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 236928 236928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 237657 237657 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.023%2C1.3e-06%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1372 SAMTools SNP 238045 238045 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C3%2C27%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.64%2C4.4e-13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1372 SAMTools SNP 238093 238093 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C31%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C3.6e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1372 SAMTools SNP 238099 238099 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C3%2C26%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.34%2C5.7e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1372 SAMTools SNP 238630 238630 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1372 SAMTools SNP 239253 239253 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C135:34 scaffold1372 SAMTools SNP 239567 239567 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold1372 SAMTools SNP 239626 239626 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.12%2C6e-05%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1372 SAMTools SNP 239866 239866 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1372 SAMTools SNP 239981 239981 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C7.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1372 SAMTools SNP 240140 240140 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 240758 240758 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.53%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1372 SAMTools SNP 241210 241210 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1.1e-09%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C195:99 scaffold1372 SAMTools SNP 241388 241388 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 242209 242209 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold1372 SAMTools SNP 242242 242242 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1372 SAMTools SNP 242269 242269 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1372 SAMTools SNP 242302 242302 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1372 SAMTools SNP 242435 242435 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1372 SAMTools SNP 242677 242677 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1372 SAMTools SNP 242698 242698 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold1372 SAMTools SNP 242974 242974 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1372 SAMTools SNP 243740 243740 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1372 SAMTools SNP 243743 243743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.61%2C9.2e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1372 SAMTools SNP 243804 243804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1372 SAMTools SNP 244058 244058 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1372 SAMTools SNP 244083 244083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1372 SAMTools SNP 244478 244478 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00091%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 244980 244980 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.074%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1372 SAMTools SNP 245001 245001 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1372 SAMTools SNP 245298 245298 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 245312 245312 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1372 SAMTools SNP 247170 247170 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D47%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1372 SAMTools SNP 247272 247272 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C13%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C0.48%2C0.094%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 248202 248202 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C7%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.029%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1372 SAMTools SNP 248314 248314 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0019%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1372 SAMTools SNP 248346 248346 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1372 SAMTools SNP 248640 248640 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 248700 248700 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1372 SAMTools SNP 248712 248712 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1372 SAMTools SNP 248981 248981 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1372 SAMTools SNP 249041 249041 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1372 SAMTools SNP 249356 249356 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1372 SAMTools SNP 249377 249377 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1372 SAMTools SNP 249626 249626 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00044%2C7.6e-12%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1372 SAMTools SNP 250325 250325 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C22%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 251480 251480 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.26%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1372 SAMTools SNP 251555 251555 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold1372 SAMTools SNP 251714 251714 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.58%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1372 SAMTools SNP 251952 251952 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 252221 252221 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 252278 252278 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.56%2C6.9e-05%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1372 SAMTools SNP 252287 252287 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C4%2C32%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.48%2C2.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1372 SAMTools SNP 252687 252687 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1372 SAMTools SNP 252769 252769 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1372 SAMTools SNP 252936 252936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1372 SAMTools SNP 253173 253173 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1372 SAMTools SNP 253185 253185 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.054%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C173:99 scaffold1372 SAMTools SNP 253314 253314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1372 SAMTools SNP 253326 253326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1372 SAMTools SNP 253540 253540 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1372 SAMTools SNP 253588 253588 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1372 SAMTools SNP 253603 253603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1372 SAMTools SNP 253865 253865 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1372 SAMTools SNP 254292 254292 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1372 SAMTools SNP 254545 254545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1372 SAMTools SNP 254577 254577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 255145 255145 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C0%2C27%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.036%2C1.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1372 SAMTools SNP 256843 256843 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D35%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C42%2C0:81 scaffold1372 SAMTools SNP 259591 259591 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1372 SAMTools SNP 264531 264531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D40%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1372 SAMTools SNP 266394 266394 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.2%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1372 SAMTools SNP 269339 269339 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.32%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1372 SAMTools SNP 269361 269361 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C32%2C46%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 269376 269376 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C41%2C85%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 269908 269908 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 270808 270808 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C8%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1372 SAMTools SNP 271177 271177 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C46%2C30%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 271348 271348 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 272000 272000 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 276756 276756 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1372 SAMTools SNP 276801 276801 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold1372 SAMTools SNP 276852 276852 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C11%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1372 SAMTools SNP 277291 277291 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C52%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1372 SAMTools SNP 277809 277809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 277818 277818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1372 SAMTools SNP 277837 277837 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1372 SAMTools SNP 278074 278074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1372 SAMTools SNP 278283 278283 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1372 SAMTools SNP 278538 278538 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1372 SAMTools SNP 278546 278546 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1372 SAMTools SNP 278552 278552 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1372 SAMTools SNP 279250 279250 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C3%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1372 SAMTools SNP 279313 279313 83.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold1372 SAMTools SNP 279606 279606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 279637 279637 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 280527 280527 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1372 SAMTools SNP 280569 280569 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1372 SAMTools SNP 280592 280592 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1372 SAMTools SNP 281801 281801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1372 SAMTools SNP 282012 282012 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C211:99 scaffold1372 SAMTools SNP 282324 282324 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C25%2C19%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.61%2C0.0003%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1372 SAMTools SNP 282354 282354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C68%2C98%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.41%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1372 SAMTools SNP 282719 282719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1372 SAMTools SNP 283055 283055 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1372 SAMTools SNP 283476 283476 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1372 SAMTools SNP 283894 283894 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1372 SAMTools SNP 283968 283968 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.23%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1372 SAMTools SNP 284012 284012 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.48%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1372 SAMTools SNP 288265 288265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C41%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1372 SAMTools SNP 290740 290740 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 301308 301308 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C34%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1372 SAMTools SNP 301527 301527 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1372 SAMTools SNP 303782 303782 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C39%2C18%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1.8e-11%2C1.1e-13%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1372 SAMTools SNP 305745 305745 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C1%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.4%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1372 SAMTools SNP 309807 309807 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00075%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1372 SAMTools SNP 314372 314372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 336600 336600 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 336611 336611 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D23%3BFQ%3D-6.97%3BPV4%3D1%2C0.02%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C21:24 scaffold1372 SAMTools SNP 336629 336629 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D23%3BFQ%3D-6.97%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C21:24 scaffold1372 SAMTools SNP 337497 337497 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-4.15%3BPV4%3D1%2C5.5e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C25:28 scaffold1372 SAMTools SNP 343919 343919 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.095%2C0.013%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C230:39 scaffold1372 SAMTools SNP 345951 345951 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.5%2C2.5e-26%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C214:63 scaffold1372 SAMTools SNP 346269 346269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1372 SAMTools SNP 348538 348538 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.31%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1372 SAMTools SNP 349146 349146 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 349250 349250 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1372 SAMTools SNP 349788 349788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1372 SAMTools SNP 349867 349867 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1372 SAMTools SNP 349897 349897 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C11%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.00037%2C0.28%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C236:99 scaffold1372 SAMTools SNP 350303 350303 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1372 SAMTools SNP 355868 355868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 365198 365198 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 365210 365210 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1372 SAMTools SNP 365433 365433 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1372 SAMTools SNP 365479 365479 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1372 SAMTools SNP 365898 365898 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D0.14%2C0.21%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold1372 SAMTools SNP 365950 365950 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C9%3BMQ%3D49%3BFQ%3D224%3BPV4%3D0.14%2C0.13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1372 SAMTools SNP 366205 366205 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold1372 SAMTools SNP 372206 372206 82.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold1372 SAMTools SNP 372225 372225 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold1372 SAMTools SNP 410120 410120 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1372 SAMTools SNP 424386 424386 39.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D24%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C4%2C0:7 scaffold1372 SAMTools SNP 424940 424940 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C36%2C0:64 scaffold1373 SAMTools SNP 4592 4592 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 4593 4593 20.1 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 6724 6724 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C245:99 scaffold1373 SAMTools SNP 7088 7088 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 24010 24010 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1373 SAMTools SNP 24243 24243 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1373 SAMTools SNP 48125 48125 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 62728 62728 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C32%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.07%2C0.17%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 64866 64866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C32%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 65148 65148 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1373 SAMTools SNP 65193 65193 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.27%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold1373 SAMTools SNP 65298 65298 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C11%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1373 SAMTools SNP 68227 68227 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C8%2C33%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.78%2C7.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1373 SAMTools SNP 68700 68700 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C37:40 scaffold1373 SAMTools SNP 70765 70765 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C81%2C0:99 scaffold1373 SAMTools SNP 70919 70919 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1373 SAMTools SNP 77003 77003 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1373 SAMTools SNP 98806 98806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C37%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1373 SAMTools SNP 98848 98848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1373 SAMTools SNP 98859 98859 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1373 SAMTools SNP 98894 98894 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 102253 102253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1373 SAMTools SNP 102849 102849 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1373 SAMTools SNP 103966 103966 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1373 SAMTools SNP 103976 103976 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1373 SAMTools SNP 104043 104043 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1373 SAMTools SNP 104059 104059 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1373 SAMTools SNP 104391 104391 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1373 SAMTools SNP 104757 104757 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1373 SAMTools SNP 104766 104766 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.31%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1373 SAMTools SNP 108901 108901 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1373 SAMTools SNP 110909 110909 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1373 SAMTools SNP 110933 110933 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 110945 110945 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.65%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1373 SAMTools SNP 110990 110990 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1373 SAMTools SNP 111578 111578 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1373 SAMTools SNP 111672 111672 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C1%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1373 SAMTools SNP 111710 111710 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1373 SAMTools SNP 113835 113835 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C11%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0026%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C213:99 scaffold1373 SAMTools SNP 114276 114276 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1373 SAMTools SNP 114289 114289 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1373 SAMTools SNP 114336 114336 82.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold1373 SAMTools SNP 114426 114426 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1373 SAMTools SNP 115236 115236 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1373 SAMTools SNP 115415 115415 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1373 SAMTools SNP 115857 115857 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C8%2C12%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0036%2C4.4e-05%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C248:99 scaffold1373 SAMTools SNP 115976 115976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1373 SAMTools SNP 118383 118383 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1373 SAMTools SNP 120503 120503 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 120544 120544 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 121327 121327 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C18%2C0:33 scaffold1373 SAMTools SNP 121423 121423 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C22%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold1373 SAMTools SNP 121462 121462 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1373 SAMTools SNP 122136 122136 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1373 SAMTools SNP 122162 122162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1373 SAMTools SNP 122186 122186 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1373 SAMTools SNP 122195 122195 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C5%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1373 SAMTools SNP 122908 122908 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1373 SAMTools SNP 122920 122920 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1373 SAMTools SNP 123646 123646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 123700 123700 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1373 SAMTools SNP 171396 171396 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 171403 171403 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1373 SAMTools SNP 172333 172333 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1373 SAMTools SNP 172348 172348 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1373 SAMTools SNP 172514 172514 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1373 SAMTools SNP 172599 172599 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C5%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 173560 173560 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C6%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1373 SAMTools SNP 174003 174003 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1373 SAMTools SNP 174014 174014 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1373 SAMTools SNP 177287 177287 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 177288 177288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1373 SAMTools SNP 178056 178056 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1373 SAMTools SNP 178117 178117 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1373 SAMTools SNP 178125 178125 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1373 SAMTools SNP 179624 179624 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1373 SAMTools SNP 179642 179642 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1373 SAMTools SNP 179645 179645 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1373 SAMTools SNP 179648 179648 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1373 SAMTools SNP 191394 191394 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1373 SAMTools SNP 194248 194248 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1374 SAMTools SNP 17353 17353 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1374 SAMTools SNP 17897 17897 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1374 SAMTools SNP 18381 18381 46.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1374 SAMTools SNP 53417 53417 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1374 SAMTools SNP 59739 59739 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1374 SAMTools SNP 59862 59862 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C74:77 scaffold1374 SAMTools SNP 59870 59870 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1374 SAMTools SNP 60987 60987 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-3.79%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C27:29 scaffold1374 SAMTools SNP 61734 61734 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1374 SAMTools SNP 63023 63023 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1374 SAMTools SNP 63073 63073 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.029%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C107:58 scaffold1374 SAMTools SNP 63074 63074 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold1374 SAMTools SNP 63578 63578 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1374 SAMTools SNP 63590 63590 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.27%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1374 SAMTools SNP 63641 63641 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1374 SAMTools SNP 64013 64013 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C252:99 scaffold1374 SAMTools SNP 64014 64014 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1374 SAMTools SNP 64047 64047 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C35%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C70%2C0:99 scaffold1374 SAMTools SNP 64478 64478 53.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold1374 SAMTools SNP 64515 64515 81.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold1375 SAMTools SNP 4375 4375 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1375 SAMTools SNP 5091 5091 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1375 SAMTools SNP 5155 5155 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.58%2C0.15%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1375 SAMTools SNP 21331 21331 3.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1375 SAMTools SNP 38237 38237 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1375 SAMTools SNP 38263 38263 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C129:34 scaffold1375 SAMTools SNP 38529 38529 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1375 SAMTools SNP 38568 38568 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1375 SAMTools SNP 38570 38570 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C220:72 scaffold1375 SAMTools SNP 39865 39865 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1375 SAMTools SNP 39869 39869 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1375 SAMTools SNP 39886 39886 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1.2e-05%2C1%2C1%2C1.9e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1375 SAMTools SNP 39989 39989 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.47%2C2.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C243:75 scaffold1375 SAMTools SNP 41008 41008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.15%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1375 SAMTools SNP 41335 41335 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.55%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1375 SAMTools SNP 41337 41337 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.27%2C0.36%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1375 SAMTools SNP 42683 42683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1375 SAMTools SNP 42917 42917 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1375 SAMTools SNP 49367 49367 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1375 SAMTools SNP 50149 50149 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1375 SAMTools SNP 51944 51944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C30%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1375 SAMTools SNP 52286 52286 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C52%2C0%2C20%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.061%2C2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1375 SAMTools SNP 53068 53068 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C328%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1375 SAMTools SNP 53170 53170 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C157%2C6%2C30%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.59%2C0.00055%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1375 SAMTools SNP 55036 55036 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.047%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C177:41 scaffold1375 SAMTools SNP 55048 55048 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C24%2C0:45 scaffold1375 SAMTools SNP 58841 58841 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C9%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C105%2C0:99 scaffold1375 SAMTools SNP 58900 58900 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.32%2C9.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C159:71 scaffold1375 SAMTools SNP 60710 60710 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1375 SAMTools SNP 62641 62641 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1375 SAMTools SNP 67068 67068 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.36%2C0.19%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C166:83 scaffold1375 SAMTools SNP 67112 67112 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold1375 SAMTools SNP 67119 67119 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.035%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C156:99 scaffold1375 SAMTools SNP 69068 69068 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.035%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C249:58 scaffold1375 SAMTools SNP 69077 69077 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1375 SAMTools SNP 69247 69247 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1375 SAMTools SNP 69259 69259 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold1375 SAMTools SNP 70661 70661 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1375 SAMTools SNP 70715 70715 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1375 SAMTools SNP 71538 71538 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1375 SAMTools SNP 72038 72038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1375 SAMTools SNP 72166 72166 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1375 SAMTools SNP 72686 72686 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.0004%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1375 SAMTools SNP 72725 72725 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1375 SAMTools SNP 72730 72730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1375 SAMTools SNP 72906 72906 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1375 SAMTools SNP 72912 72912 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1375 SAMTools SNP 73489 73489 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1375 SAMTools SNP 73504 73504 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1375 SAMTools SNP 73935 73935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1377 SAMTools SNP 3632 3632 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1377 SAMTools SNP 4632 4632 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold1377 SAMTools SNP 4906 4906 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1377 SAMTools SNP 53288 53288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1377 SAMTools SNP 53312 53312 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1377 SAMTools SNP 53544 53544 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1377 SAMTools SNP 53695 53695 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1377 SAMTools SNP 53710 53710 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1377 SAMTools SNP 57599 57599 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1377 SAMTools SNP 96884 96884 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1377 SAMTools SNP 100774 100774 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C68%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1377 SAMTools SNP 101227 101227 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1377 SAMTools SNP 130603 130603 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1377 SAMTools SNP 133616 133616 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1377 SAMTools SNP 149021 149021 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C153:67 scaffold1377 SAMTools SNP 149272 149272 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1377 SAMTools SNP 151821 151821 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold138 SAMTools SNP 6322 6322 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C12%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.00046%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold138 SAMTools SNP 6426 6426 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold138 SAMTools SNP 18535 18535 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold138 SAMTools SNP 34737 34737 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C8.8e-16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C210:81 scaffold138 SAMTools SNP 38203 38203 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold138 SAMTools SNP 44810 44810 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold138 SAMTools SNP 45401 45401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold138 SAMTools SNP 46404 46404 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.46%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold138 SAMTools SNP 46728 46728 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold138 SAMTools SNP 46792 46792 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold138 SAMTools SNP 46805 46805 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold138 SAMTools SNP 47419 47419 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold138 SAMTools SNP 47428 47428 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.5%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold138 SAMTools SNP 50714 50714 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold138 SAMTools SNP 51710 51710 27.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold138 SAMTools SNP 52116 52116 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold138 SAMTools SNP 52992 52992 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1328%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D526%2C21%2C773%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D5.7e-06%2C0%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold138 SAMTools SNP 53804 53804 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold138 SAMTools SNP 57908 57908 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold138 SAMTools SNP 65998 65998 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold138 SAMTools SNP 68068 68068 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold138 SAMTools SNP 68077 68077 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C18%2C0:33 scaffold138 SAMTools SNP 69845 69845 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold138 SAMTools SNP 84567 84567 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold138 SAMTools SNP 151546 151546 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold138 SAMTools SNP 167099 167099 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold138 SAMTools SNP 187897 187897 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold138 SAMTools SNP 188723 188723 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold138 SAMTools SNP 192832 192832 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1382 SAMTools SNP 5047 5047 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1382 SAMTools SNP 7954 7954 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1382 SAMTools SNP 24455 24455 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1382 SAMTools SNP 24568 24568 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold1382 SAMTools SNP 25580 25580 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold1382 SAMTools SNP 25745 25745 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1382 SAMTools SNP 26373 26373 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1382 SAMTools SNP 28683 28683 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1382 SAMTools SNP 113157 113157 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 113211 113211 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1382 SAMTools SNP 113345 113345 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1382 SAMTools SNP 113375 113375 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1382 SAMTools SNP 113579 113579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1382 SAMTools SNP 113629 113629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1382 SAMTools SNP 115001 115001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1382 SAMTools SNP 115027 115027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1382 SAMTools SNP 115106 115106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C4%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1382 SAMTools SNP 115605 115605 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C111%2C0:99 scaffold1382 SAMTools SNP 116675 116675 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.03%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C216:65 scaffold1382 SAMTools SNP 117898 117898 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1382 SAMTools SNP 124340 124340 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold1382 SAMTools SNP 125317 125317 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1382 SAMTools SNP 128392 128392 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1382 SAMTools SNP 128845 128845 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.22%2C0.093%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1382 SAMTools SNP 129491 129491 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold1382 SAMTools SNP 129553 129553 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1382 SAMTools SNP 177273 177273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 177563 177563 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1382 SAMTools SNP 177577 177577 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1382 SAMTools SNP 178070 178070 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1382 SAMTools SNP 180168 180168 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1382 SAMTools SNP 180171 180171 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1382 SAMTools SNP 180860 180860 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 180891 180891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 184927 184927 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C67:70 scaffold1382 SAMTools SNP 184996 184996 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1382 SAMTools SNP 185025 185025 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C64:67 scaffold1382 SAMTools SNP 185366 185366 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1382 SAMTools SNP 188952 188952 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 189045 189045 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1382 SAMTools SNP 192618 192618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 193033 193033 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1382 SAMTools SNP 193266 193266 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1382 SAMTools SNP 193272 193272 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1382 SAMTools SNP 199630 199630 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1382 SAMTools SNP 202118 202118 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1382 SAMTools SNP 202119 202119 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1382 SAMTools SNP 202184 202184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1382 SAMTools SNP 202229 202229 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1382 SAMTools SNP 203519 203519 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C5%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1382 SAMTools SNP 205332 205332 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C237:84 scaffold1382 SAMTools SNP 205863 205863 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1382 SAMTools SNP 206286 206286 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1382 SAMTools SNP 206322 206322 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1382 SAMTools SNP 206686 206686 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C12%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C225:99 scaffold1382 SAMTools SNP 206692 206692 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0034%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C222:60 scaffold1382 SAMTools SNP 206707 206707 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.046%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C220:99 scaffold1382 SAMTools SNP 219861 219861 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C21%2C0:39 scaffold1382 SAMTools SNP 221092 221092 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1382 SAMTools SNP 221111 221111 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1382 SAMTools SNP 226067 226067 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 226501 226501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 231118 231118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 231687 231687 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 231879 231879 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1382 SAMTools SNP 237962 237962 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1382 SAMTools SNP 237968 237968 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1382 SAMTools SNP 238133 238133 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C45%2C0:87 scaffold1382 SAMTools SNP 238154 238154 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C81%2C0:99 scaffold1382 SAMTools SNP 238250 238250 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1382 SAMTools SNP 239571 239571 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1382 SAMTools SNP 274203 274203 3.69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C15%2C0:13 scaffold1383 SAMTools SNP 67431 67431 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1383 SAMTools SNP 67434 67434 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 3775 3775 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.52%2C0.061%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1385 SAMTools SNP 4019 4019 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.27%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1385 SAMTools SNP 4030 4030 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1385 SAMTools SNP 4054 4054 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1385 SAMTools SNP 4115 4115 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C27%2C0:51 scaffold1385 SAMTools SNP 4123 4123 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C27%2C9%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.01%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1385 SAMTools SNP 4162 4162 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C54%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 4326 4326 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C11%2C33%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.015%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1385 SAMTools SNP 6381 6381 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 6568 6568 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 9697 9697 52.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1385 SAMTools SNP 10587 10587 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1385 SAMTools SNP 10591 10591 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1385 SAMTools SNP 10769 10769 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 10906 10906 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 13774 13774 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1385 SAMTools SNP 14364 14364 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1385 SAMTools SNP 14593 14593 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1385 SAMTools SNP 14617 14617 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1385 SAMTools SNP 15115 15115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 15302 15302 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C15%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C197:99 scaffold1385 SAMTools SNP 15327 15327 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold1385 SAMTools SNP 17348 17348 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1385 SAMTools SNP 17350 17350 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1385 SAMTools SNP 17425 17425 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 17455 17455 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.078%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 18453 18453 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.62%2C1%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1385 SAMTools SNP 19446 19446 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C16%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.38%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C239:99 scaffold1385 SAMTools SNP 19724 19724 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 19731 19731 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C169:99 scaffold1385 SAMTools SNP 20855 20855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C50%2C22%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 20917 20917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 20986 20986 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1385 SAMTools SNP 21537 21537 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1385 SAMTools SNP 21556 21556 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1385 SAMTools SNP 21567 21567 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 21630 21630 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1385 SAMTools SNP 21633 21633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1385 SAMTools SNP 22243 22243 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C45%2C0:87 scaffold1385 SAMTools SNP 23411 23411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C55%2C25%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.34%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 24468 24468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 24507 24507 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 25350 25350 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C11%2C34%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 25386 25386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 25864 25864 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 25903 25903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C38%2C95%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 26068 26068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C49%2C152%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 26924 26924 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C89%2C103%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 27429 27429 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1385 SAMTools SNP 27431 27431 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1385 SAMTools SNP 27432 27432 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C0.21%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 27512 27512 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1385 SAMTools SNP 27538 27538 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C13%2C27%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.41%2C0.0044%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1385 SAMTools SNP 27588 27588 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C75%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 27611 27611 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C11%2C25%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1385 SAMTools SNP 27959 27959 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C5%2C25%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1385 SAMTools SNP 28001 28001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.01%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 28046 28046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C25%2C5%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-11%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 28641 28641 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C66%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-09%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 28662 28662 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C45%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1385 SAMTools SNP 28704 28704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C24%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1385 SAMTools SNP 28719 28719 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C36%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1385 SAMTools SNP 30349 30349 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1385 SAMTools SNP 32581 32581 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C14%2C10%2C17%3BMQ%3D50%3BFQ%3D172%3BPV4%3D3.6e-07%2C0.031%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1385 SAMTools SNP 32591 32591 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C31%2C3%2C26%3BMQ%3D50%3BFQ%3D181%3BPV4%3D2.3e-07%2C0.08%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1385 SAMTools SNP 32598 32598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C40%2C45%3BMQ%3D50%3BFQ%3D216%3BPV4%3D5e-05%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1385 SAMTools SNP 32608 32608 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C40%2C77%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0015%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1385 SAMTools SNP 32750 32750 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C100%2C1%2C14%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.13%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C182:83 scaffold1385 SAMTools SNP 32815 32815 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.015%2C1.9e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1385 SAMTools SNP 33591 33591 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1385 SAMTools SNP 39724 39724 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1385 SAMTools SNP 39747 39747 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1385 SAMTools SNP 40745 40745 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1385 SAMTools SNP 40760 40760 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1385 SAMTools SNP 40769 40769 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1385 SAMTools SNP 41657 41657 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.00016%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C195:99 scaffold1385 SAMTools SNP 41669 41669 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C192:99 scaffold1385 SAMTools SNP 42447 42447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 42461 42461 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 43953 43953 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C48%2C0:93 scaffold1385 SAMTools SNP 44370 44370 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1385 SAMTools SNP 44423 44423 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 47964 47964 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1385 SAMTools SNP 48022 48022 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 48054 48054 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 61676 61676 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1385 SAMTools SNP 61688 61688 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1385 SAMTools SNP 62608 62608 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0038%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold1385 SAMTools SNP 62645 62645 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1385 SAMTools SNP 62938 62938 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1385 SAMTools SNP 65649 65649 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1385 SAMTools SNP 65750 65750 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 65942 65942 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1385 SAMTools SNP 66466 66466 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold1385 SAMTools SNP 66509 66509 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1385 SAMTools SNP 66710 66710 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 67038 67038 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1385 SAMTools SNP 68476 68476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1385 SAMTools SNP 69219 69219 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C218:99 scaffold1385 SAMTools SNP 69257 69257 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1385 SAMTools SNP 69434 69434 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1385 SAMTools SNP 76577 76577 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1385 SAMTools SNP 76627 76627 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1385 SAMTools SNP 76637 76637 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1385 SAMTools SNP 76953 76953 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1385 SAMTools SNP 76967 76967 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 79354 79354 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold1385 SAMTools SNP 79375 79375 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1385 SAMTools SNP 81264 81264 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1385 SAMTools SNP 82192 82192 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1385 SAMTools SNP 82748 82748 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1385 SAMTools SNP 82812 82812 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.38%2C9.2e-09%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1385 SAMTools SNP 82995 82995 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1385 SAMTools SNP 82999 82999 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.3%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1385 SAMTools SNP 83312 83312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C1%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.28%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 83829 83829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1385 SAMTools SNP 83846 83846 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1385 SAMTools SNP 84641 84641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1385 SAMTools SNP 85711 85711 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1385 SAMTools SNP 85731 85731 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1385 SAMTools SNP 85782 85782 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1385 SAMTools SNP 86058 86058 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1385 SAMTools SNP 86251 86251 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1385 SAMTools SNP 86272 86272 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1385 SAMTools SNP 86508 86508 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1385 SAMTools SNP 87015 87015 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1385 SAMTools SNP 87050 87050 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1385 SAMTools SNP 87600 87600 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1385 SAMTools SNP 87663 87663 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.11%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1385 SAMTools SNP 87839 87839 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1385 SAMTools SNP 88270 88270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 88754 88754 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 88925 88925 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.03%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1385 SAMTools SNP 88946 88946 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1385 SAMTools SNP 89781 89781 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.37%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 89801 89801 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 90262 90262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 90473 90473 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1385 SAMTools SNP 90523 90523 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1385 SAMTools SNP 90540 90540 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 90931 90931 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1385 SAMTools SNP 90934 90934 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 93479 93479 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 93487 93487 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 93524 93524 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 93560 93560 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 93820 93820 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1385 SAMTools SNP 93893 93893 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 94190 94190 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1385 SAMTools SNP 95529 95529 9.63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold1385 SAMTools SNP 97012 97012 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 97027 97027 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 101207 101207 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1385 SAMTools SNP 101384 101384 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1385 SAMTools SNP 101394 101394 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1385 SAMTools SNP 101429 101429 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 101831 101831 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1385 SAMTools SNP 101858 101858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1385 SAMTools SNP 106148 106148 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 106365 106365 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 106513 106513 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 106536 106536 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 106826 106826 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 106967 106967 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1385 SAMTools SNP 107025 107025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 107605 107605 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 107623 107623 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 109383 109383 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 109398 109398 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 109458 109458 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.021%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1385 SAMTools SNP 109509 109509 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1385 SAMTools SNP 109759 109759 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1385 SAMTools SNP 109797 109797 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1385 SAMTools SNP 109919 109919 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1385 SAMTools SNP 110295 110295 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 110318 110318 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 110372 110372 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 111632 111632 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1385 SAMTools SNP 111635 111635 42.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1385 SAMTools SNP 112304 112304 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold1385 SAMTools SNP 112321 112321 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1385 SAMTools SNP 114592 114592 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1385 SAMTools SNP 114658 114658 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1385 SAMTools SNP 114961 114961 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 114976 114976 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 114981 114981 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 115879 115879 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C126:80 scaffold1385 SAMTools SNP 116141 116141 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1385 SAMTools SNP 118713 118713 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 120165 120165 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 120241 120241 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1385 SAMTools SNP 120361 120361 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1385 SAMTools SNP 121341 121341 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 160772 160772 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1385 SAMTools SNP 161498 161498 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1385 SAMTools SNP 161684 161684 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C0.16%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1385 SAMTools SNP 162538 162538 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C14%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1385 SAMTools SNP 163653 163653 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1385 SAMTools SNP 164037 164037 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1385 SAMTools SNP 165660 165660 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1385 SAMTools SNP 167572 167572 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1385 SAMTools SNP 167583 167583 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1385 SAMTools SNP 168130 168130 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1385 SAMTools SNP 168463 168463 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 168475 168475 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1385 SAMTools SNP 169086 169086 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1385 SAMTools SNP 169101 169101 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1385 SAMTools SNP 169171 169171 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1385 SAMTools SNP 169458 169458 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1385 SAMTools SNP 169473 169473 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1385 SAMTools SNP 170276 170276 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 170284 170284 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1385 SAMTools SNP 170686 170686 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1385 SAMTools SNP 171038 171038 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1385 SAMTools SNP 171635 171635 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1385 SAMTools SNP 172332 172332 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 172401 172401 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 172686 172686 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1385 SAMTools SNP 172964 172964 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 173566 173566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1385 SAMTools SNP 174191 174191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1385 SAMTools SNP 174233 174233 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 174254 174254 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 175425 175425 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 175429 175429 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 176069 176069 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1385 SAMTools SNP 182243 182243 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1385 SAMTools SNP 182265 182265 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold1385 SAMTools SNP 183277 183277 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 184520 184520 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1385 SAMTools SNP 185364 185364 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C32%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1385 SAMTools SNP 185772 185772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1385 SAMTools SNP 185822 185822 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C23%2C18%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.09%2C8e-10%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1385 SAMTools SNP 187247 187247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C132%2C16%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C0.29%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 187274 187274 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C120%2C29%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 190600 190600 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1385 SAMTools SNP 191388 191388 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C8%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.00098%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1385 SAMTools SNP 191397 191397 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 191636 191636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1385 SAMTools SNP 191744 191744 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 191795 191795 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C173%2C97%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 192014 192014 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C211%2C113%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 192163 192163 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D522%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C104%2C142%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 192310 192310 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D20%2C1%2C123%2C87%3BMQ%3D50%3BFQ%3D-207%3BPV4%3D0.00061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C0:99 scaffold1385 SAMTools SNP 192436 192436 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C51%2C0:99 scaffold1385 SAMTools SNP 192703 192703 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold1385 SAMTools SNP 192709 192709 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 192730 192730 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 192751 192751 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1385 SAMTools SNP 192931 192931 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1385 SAMTools SNP 192949 192949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1385 SAMTools SNP 193078 193078 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C8%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1.5e-06%2C5.7e-14%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1385 SAMTools SNP 193269 193269 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C0%2C9%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1.6e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1385 SAMTools SNP 193290 193290 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1385 SAMTools SNP 193302 193302 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 193447 193447 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold1385 SAMTools SNP 193768 193768 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C30%2C0:57 scaffold1385 SAMTools SNP 193774 193774 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold1385 SAMTools SNP 193894 193894 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C251:99 scaffold1385 SAMTools SNP 194031 194031 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C17%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0031%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1385 SAMTools SNP 194043 194043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C12%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1385 SAMTools SNP 194076 194076 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 194257 194257 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 194276 194276 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C25%2C5%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.69%2C1%2C1%2C6.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1385 SAMTools SNP 194425 194425 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 194446 194446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C20%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1385 SAMTools SNP 194768 194768 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 194777 194777 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C74%2C1%2C35%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1385 SAMTools SNP 194780 194780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C72%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1385 SAMTools SNP 194996 194996 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C35%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.32%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 195163 195163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C15%2C60%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C4.8e-09%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 195214 195214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C46%2C57%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 195220 195220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C27%2C49%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 198384 198384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C3%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 198675 198675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1385 SAMTools SNP 199343 199343 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C231%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 199625 199625 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C30%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 199685 199685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C26%2C177%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C5e-145%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 199953 199953 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C196%2C95%2C181%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.93%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 199999 199999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C58%2C33%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200025 200025 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C30%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D1%2C0.013%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C51%2C0:99 scaffold1385 SAMTools SNP 200091 200091 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C93%2C42%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200103 200103 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C66%2C44%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C4.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200118 200118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C91%2C36%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200447 200447 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C124%2C23%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200483 200483 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C47%2C48%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C3.1e-27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 200558 200558 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C88%2C45%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 200798 200798 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 201135 201135 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C27%2C62%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1.3e-27%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 201715 201715 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1385 SAMTools SNP 201802 201802 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C120%2C0:99 scaffold1385 SAMTools SNP 201883 201883 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C34%2C76%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1385 SAMTools SNP 201994 201994 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D280%2C24%2C174%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D2.8e-05%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1385 SAMTools SNP 202120 202120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D934%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D177%2C361%2C152%2C240%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.02%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 202294 202294 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D800%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D293%2C124%2C276%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 203020 203020 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D710%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C159%2C169%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 203062 203062 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1196%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D401%2C184%2C442%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-13%2C1%2C0.093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 203233 203233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D739%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D323%2C53%2C277%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 203269 203269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D906%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C808%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 203759 203759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C341%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 203772 203772 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C18%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 204779 204779 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 204800 204800 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C33%2C0:63 scaffold1385 SAMTools SNP 204880 204880 6.79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1385 SAMTools SNP 206423 206423 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C48%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 206434 206434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C9%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C0.11%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 206472 206472 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D317%2C5%2C119%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1385 SAMTools SNP 206607 206607 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D562%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C540%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 206658 206658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D757%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C336%2C109%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 206909 206909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C398%2C19%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C6.4e-07%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 206930 206930 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C158%2C61%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.1e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 207276 207276 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C208%2C28%2C14%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1385 SAMTools SNP 207931 207931 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1385 SAMTools SNP 208372 208372 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C371%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 208379 208379 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C114%2C0:99 scaffold1385 SAMTools SNP 208404 208404 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C96%2C0:99 scaffold1385 SAMTools SNP 210975 210975 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1385 SAMTools SNP 211259 211259 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C15%2C0:27 scaffold1385 SAMTools SNP 211376 211376 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D5.95%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C43:31 scaffold1385 SAMTools SNP 213170 213170 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D26%3BFQ%3D6.98%3BPV4%3D0.055%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C33:36 scaffold1385 SAMTools SNP 213194 213194 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C19%2C2%3BMQ%3D48%3BFQ%3D204%3BPV4%3D1%2C1%2C0.34%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C231:99 scaffold1385 SAMTools SNP 213590 213590 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1.1e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 213647 213647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 213985 213985 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C238:99 scaffold1385 SAMTools SNP 214246 214246 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C20%2C18%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C2.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1385 SAMTools SNP 215227 215227 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C110:99 scaffold1385 SAMTools SNP 215506 215506 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.4e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1385 SAMTools SNP 216301 216301 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1385 SAMTools SNP 216313 216313 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1385 SAMTools SNP 216322 216322 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1385 SAMTools SNP 216367 216367 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1385 SAMTools SNP 216370 216370 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1385 SAMTools SNP 216424 216424 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1385 SAMTools SNP 218210 218210 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1385 SAMTools SNP 218451 218451 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 218472 218472 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1385 SAMTools SNP 222418 222418 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1385 SAMTools SNP 229290 229290 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1385 SAMTools SNP 235242 235242 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold1385 SAMTools SNP 235292 235292 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1385 SAMTools SNP 236433 236433 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold1385 SAMTools SNP 244160 244160 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1385 SAMTools SNP 244177 244177 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1385 SAMTools SNP 248461 248461 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.37%2C8.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C118:39 scaffold1385 SAMTools SNP 248557 248557 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C71:74 scaffold1385 SAMTools SNP 248918 248918 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1385 SAMTools SNP 249201 249201 15.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1385 SAMTools SNP 249615 249615 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1385 SAMTools SNP 249855 249855 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.00081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C81:84 scaffold1385 SAMTools SNP 250990 250990 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1385 SAMTools SNP 252174 252174 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C1%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1385 SAMTools SNP 254781 254781 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C89%2C17%2C82%3BMQ%3D36%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.02%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 256697 256697 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C7%3BMQ%3D37%3BFQ%3D133%3BPV4%3D0.72%2C0.073%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1385 SAMTools SNP 256873 256873 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C3%3BMQ%3D39%3BFQ%3D112%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C139:99 scaffold1385 SAMTools SNP 256945 256945 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C19%2C7%3BMQ%3D49%3BFQ%3D193%3BPV4%3D0.42%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1385 SAMTools SNP 259056 259056 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.087%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1385 SAMTools SNP 259161 259161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1385 SAMTools SNP 259906 259906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1385 SAMTools SNP 259933 259933 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1385 SAMTools SNP 259972 259972 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1385 SAMTools SNP 260380 260380 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C42%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1385 SAMTools SNP 260407 260407 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1385 SAMTools SNP 260521 260521 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C14%2C41%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 260533 260533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C17%2C48%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 262505 262505 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C52%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 264420 264420 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1385 SAMTools SNP 265717 265717 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C42%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1385 SAMTools SNP 274556 274556 24.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1385 SAMTools SNP 274803 274803 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C63%2C0:99 scaffold1385 SAMTools SNP 275644 275644 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 275677 275677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C2%2C78%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 276445 276445 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C103%2C34%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1.5e-19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 276490 276490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C319%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1385 SAMTools SNP 277254 277254 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C116%2C114%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 277611 277611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C112%2C78%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.34%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 277880 277880 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C112%2C11%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 279201 279201 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1385 SAMTools SNP 283455 283455 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C198:53 scaffold1385 SAMTools SNP 284543 284543 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C35%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.33%2C2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C157:99 scaffold1385 SAMTools SNP 284613 284613 58.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1385 SAMTools SNP 285063 285063 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.29%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1385 SAMTools SNP 297984 297984 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1385 SAMTools SNP 301020 301020 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1385 SAMTools SNP 301925 301925 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C129%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C7.2e-14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C255%2C0:99 scaffold1385 SAMTools SNP 304485 304485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C43%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C8.1e-05%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 304497 304497 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C4%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.69%2C0.13%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1385 SAMTools SNP 304515 304515 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C34%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 306600 306600 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C58%2C74%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 306833 306833 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C4%2C109%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.067%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 306873 306873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.23%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1385 SAMTools SNP 306908 306908 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C131%2C0%2C42%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.34%2C1.2e-16%2C1%2C3.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1385 SAMTools SNP 307875 307875 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1385 SAMTools SNP 309009 309009 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C19%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.41%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1385 SAMTools SNP 309017 309017 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1385 SAMTools SNP 309021 309021 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1386 SAMTools SNP 1090 1090 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C53%3BMQ%3D1%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C184%2C0:99 scaffold1386 SAMTools SNP 1846 1846 6.19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D12%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C57%2C0:48 scaffold1386 SAMTools SNP 2428 2428 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C21%2C3%3BMQ%3D32%3BFQ%3D83%3BPV4%3D0.21%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C209:99 scaffold1386 SAMTools SNP 2500 2500 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C2%2C14%3BMQ%3D30%3BFQ%3D112%3BPV4%3D0.15%2C0.39%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1386 SAMTools SNP 2533 2533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C21%2C26%3BMQ%3D33%3BFQ%3D175%3BPV4%3D0.00068%2C0.37%2C0.23%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1386 SAMTools SNP 2880 2880 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C37%3BMQ%3D19%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C132%2C0:99 scaffold1386 SAMTools SNP 13864 13864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1386 SAMTools SNP 13908 13908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.091%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 13939 13939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C15%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1386 SAMTools SNP 14504 14504 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.49%2C0.04%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1386 SAMTools SNP 14852 14852 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1386 SAMTools SNP 15073 15073 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1386 SAMTools SNP 18531 18531 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.067%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C238:99 scaffold1386 SAMTools SNP 19313 19313 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 20988 20988 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C6.9e-06%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C253:94 scaffold1386 SAMTools SNP 23794 23794 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D4.4e-05%2C0.23%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1386 SAMTools SNP 26425 26425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 29046 29046 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1386 SAMTools SNP 29513 29513 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1386 SAMTools SNP 32705 32705 47.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1386 SAMTools SNP 33000 33000 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C38%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C7.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 33024 33024 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.46%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1386 SAMTools SNP 33261 33261 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1386 SAMTools SNP 35123 35123 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C88:47 scaffold1386 SAMTools SNP 39683 39683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 39703 39703 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.5%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1386 SAMTools SNP 39723 39723 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1386 SAMTools SNP 41432 41432 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1386 SAMTools SNP 42515 42515 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.4%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C143:99 scaffold1386 SAMTools SNP 42531 42531 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.022%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1386 SAMTools SNP 43151 43151 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1386 SAMTools SNP 43158 43158 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1386 SAMTools SNP 43341 43341 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold1386 SAMTools SNP 43497 43497 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1386 SAMTools SNP 43802 43802 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold1386 SAMTools SNP 43827 43827 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C4%3BMQ%3D47%3BFQ%3D175%3BPV4%3D0.0081%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1386 SAMTools SNP 45094 45094 35.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1386 SAMTools SNP 45187 45187 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold1386 SAMTools SNP 45554 45554 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1386 SAMTools SNP 45590 45590 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1386 SAMTools SNP 45755 45755 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1386 SAMTools SNP 45802 45802 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1386 SAMTools SNP 45904 45904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1386 SAMTools SNP 46107 46107 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C27%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 46124 46124 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C8%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 46168 46168 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1386 SAMTools SNP 46183 46183 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.3%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 46791 46791 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 46804 46804 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1386 SAMTools SNP 46829 46829 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.47%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C215:99 scaffold1386 SAMTools SNP 46847 46847 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1386 SAMTools SNP 48653 48653 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1386 SAMTools SNP 58111 58111 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1386 SAMTools SNP 59474 59474 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0:56 scaffold1386 SAMTools SNP 59733 59733 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1386 SAMTools SNP 67439 67439 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1386 SAMTools SNP 67688 67688 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1386 SAMTools SNP 68462 68462 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1386 SAMTools SNP 68492 68492 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1386 SAMTools SNP 88466 88466 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1386 SAMTools SNP 96075 96075 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1388 SAMTools SNP 14684 14684 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1388 SAMTools SNP 33856 33856 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1388 SAMTools SNP 71625 71625 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1388 SAMTools SNP 86956 86956 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1388 SAMTools SNP 99416 99416 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1388 SAMTools SNP 103924 103924 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1388 SAMTools SNP 105040 105040 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C4.2e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold1388 SAMTools SNP 106062 106062 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1388 SAMTools SNP 106063 106063 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1388 SAMTools SNP 106417 106417 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1388 SAMTools SNP 106584 106584 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1388 SAMTools SNP 145464 145464 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1388 SAMTools SNP 186528 186528 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.14%3BPV4%3D1%2C0.00013%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C32:35 scaffold1388 SAMTools SNP 187617 187617 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1388 SAMTools SNP 188332 188332 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1388 SAMTools SNP 188346 188346 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1388 SAMTools SNP 194761 194761 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1388 SAMTools SNP 195139 195139 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D0.25%2C0.00083%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold1388 SAMTools SNP 195245 195245 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1388 SAMTools SNP 217950 217950 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C41%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1388 SAMTools SNP 218306 218306 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C22%2C80%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold139 SAMTools SNP 2533 2533 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold139 SAMTools SNP 2678 2678 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold139 SAMTools SNP 3716 3716 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold139 SAMTools SNP 3822 3822 19.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold139 SAMTools SNP 6487 6487 44.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold139 SAMTools SNP 6571 6571 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold139 SAMTools SNP 7069 7069 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold139 SAMTools SNP 107044 107044 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold139 SAMTools SNP 107073 107073 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold139 SAMTools SNP 108694 108694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C22%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold139 SAMTools SNP 108724 108724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C25%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold139 SAMTools SNP 109005 109005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C23%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold139 SAMTools SNP 109215 109215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold139 SAMTools SNP 110171 110171 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold139 SAMTools SNP 110896 110896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold139 SAMTools SNP 110925 110925 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C29%2C4%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold139 SAMTools SNP 110959 110959 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C48%2C5%2C13%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.78%2C5.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold139 SAMTools SNP 110965 110965 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C48%2C5%2C13%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold139 SAMTools SNP 111615 111615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold139 SAMTools SNP 113331 113331 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold139 SAMTools SNP 116550 116550 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold139 SAMTools SNP 116610 116610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold139 SAMTools SNP 118017 118017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.19%2C0.091%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold139 SAMTools SNP 118029 118029 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold139 SAMTools SNP 118077 118077 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold139 SAMTools SNP 118113 118113 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold139 SAMTools SNP 118437 118437 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold139 SAMTools SNP 118486 118486 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold139 SAMTools SNP 118488 118488 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold139 SAMTools SNP 120291 120291 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold139 SAMTools SNP 120493 120493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C12%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold139 SAMTools SNP 120700 120700 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold139 SAMTools SNP 121313 121313 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.03%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold139 SAMTools SNP 123953 123953 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold139 SAMTools SNP 123979 123979 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 2905 2905 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 3049 3049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 69299 69299 68.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold1391 SAMTools SNP 148295 148295 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1391 SAMTools SNP 148358 148358 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C7%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C123%2C0:99 scaffold1391 SAMTools SNP 148380 148380 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C55%2C39%3BMQ%3D50%3BFQ%3D-263%3BPV4%3D0.42%2C6.3e-19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C236%2C0:99 scaffold1391 SAMTools SNP 148422 148422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 154640 154640 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1391 SAMTools SNP 154780 154780 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1391 SAMTools SNP 157132 157132 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.013%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1391 SAMTools SNP 157318 157318 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1391 SAMTools SNP 158173 158173 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C3.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C218:99 scaffold1391 SAMTools SNP 180516 180516 23.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold1391 SAMTools SNP 180983 180983 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C16%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C157%2C0:99 scaffold1391 SAMTools SNP 181451 181451 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C31%2C1%2C25%3BMQ%3D50%3BFQ%3D22%3BPV4%3D3.1e-06%2C6.3e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1391 SAMTools SNP 181998 181998 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C66%2C0:99 scaffold1391 SAMTools SNP 182198 182198 33.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1391 SAMTools SNP 183779 183779 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D936%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1391 SAMTools SNP 183814 183814 30.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D962%3BVDB%3D0.0002%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C7:10 scaffold1391 SAMTools SNP 183884 183884 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1112%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C934%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 186886 186886 48.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1391 SAMTools SNP 186937 186937 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C33%2C0:63 scaffold1391 SAMTools SNP 187066 187066 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1391 SAMTools SNP 187076 187076 85.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C18%2C0:33 scaffold1391 SAMTools SNP 187093 187093 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C36%2C0:69 scaffold1391 SAMTools SNP 187702 187702 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C102%2C38%2C26%3BMQ%3D50%3BFQ%3D41%3BPV4%3D3.7e-06%2C1.5e-111%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1391 SAMTools SNP 188146 188146 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold1391 SAMTools SNP 188150 188150 44.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0006%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C9.3e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C2:5 scaffold1391 SAMTools SNP 192605 192605 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1391 SAMTools SNP 193202 193202 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1391 SAMTools SNP 193351 193351 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1391 SAMTools SNP 193603 193603 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C48%2C0:93 scaffold1391 SAMTools SNP 194173 194173 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C48%2C0:93 scaffold1391 SAMTools SNP 195050 195050 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold1391 SAMTools SNP 195175 195175 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold1391 SAMTools SNP 195445 195445 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1391 SAMTools SNP 198346 198346 12.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1391 SAMTools SNP 198596 198596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1391 SAMTools SNP 198611 198611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1391 SAMTools SNP 204342 204342 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1391 SAMTools SNP 204345 204345 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1391 SAMTools SNP 204375 204375 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D46%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C85:88 scaffold1391 SAMTools SNP 205828 205828 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D44%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C144:99 scaffold1391 SAMTools SNP 205931 205931 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C8%3BMQ%3D47%3BFQ%3D20.1%3BPV4%3D0.29%2C9.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C212:50 scaffold1391 SAMTools SNP 206287 206287 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1391 SAMTools SNP 207205 207205 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1391 SAMTools SNP 207847 207847 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C140:99 scaffold1391 SAMTools SNP 209878 209878 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C106%2C48%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 210163 210163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C64%2C51%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 210471 210471 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C138%2C32%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 211347 211347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1391 SAMTools SNP 211973 211973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1391 SAMTools SNP 214959 214959 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1391 SAMTools SNP 215813 215813 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1225%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D305%2C277%2C282%2C358%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 216495 216495 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.42%2C4.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C237:48 scaffold1391 SAMTools SNP 217214 217214 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold1391 SAMTools SNP 217455 217455 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C141%2C0:99 scaffold1391 SAMTools SNP 217481 217481 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.8e-30%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1391 SAMTools SNP 217864 217864 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D499%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C416%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C255%2C0:99 scaffold1391 SAMTools SNP 218244 218244 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C15%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C9.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C190:90 scaffold1391 SAMTools SNP 221149 221149 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C3%3BMQ%3D42%3BFQ%3D85%3BPV4%3D0.055%2C1.1e-08%2C0.071%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C185:99 scaffold1391 SAMTools SNP 221272 221272 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D0.33%2C0.01%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1391 SAMTools SNP 221746 221746 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1391 SAMTools SNP 224206 224206 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1391 SAMTools SNP 224522 224522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1391 SAMTools SNP 224546 224546 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.57%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1391 SAMTools SNP 226382 226382 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1391 SAMTools SNP 226508 226508 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1391 SAMTools SNP 226855 226855 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1391 SAMTools SNP 227413 227413 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C96:99 scaffold1391 SAMTools SNP 228342 228342 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1391 SAMTools SNP 228357 228357 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1391 SAMTools SNP 228966 228966 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1391 SAMTools SNP 229017 229017 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1391 SAMTools SNP 229068 229068 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 229077 229077 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1391 SAMTools SNP 229119 229119 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1391 SAMTools SNP 229126 229126 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1391 SAMTools SNP 231586 231586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1391 SAMTools SNP 231612 231612 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C9%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.16%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1391 SAMTools SNP 231929 231929 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.7%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1391 SAMTools SNP 232147 232147 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1391 SAMTools SNP 233169 233169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1391 SAMTools SNP 233630 233630 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold1391 SAMTools SNP 233708 233708 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1391 SAMTools SNP 233896 233896 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1391 SAMTools SNP 235322 235322 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 235338 235338 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 235441 235441 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 235740 235740 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1391 SAMTools SNP 235773 235773 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1391 SAMTools SNP 237691 237691 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1391 SAMTools SNP 237917 237917 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 242662 242662 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1391 SAMTools SNP 245849 245849 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C138%2C3%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.0027%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 246965 246965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 246974 246974 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1391 SAMTools SNP 247046 247046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C7%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1391 SAMTools SNP 248032 248032 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C19%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1391 SAMTools SNP 248581 248581 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.086%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C241:99 scaffold1391 SAMTools SNP 249296 249296 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 249297 249297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 249483 249483 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C9.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C251:33 scaffold1391 SAMTools SNP 249686 249686 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 264522 264522 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 264617 264617 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1391 SAMTools SNP 265271 265271 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C248%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 265339 265339 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C12%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1391 SAMTools SNP 265483 265483 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1391 SAMTools SNP 267489 267489 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C8e-17%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C203:99 scaffold1391 SAMTools SNP 271700 271700 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1391 SAMTools SNP 275604 275604 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 275784 275784 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C5%3BMQ%3D49%3BFQ%3D10.4%3BPV4%3D0.56%2C0.022%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1391 SAMTools SNP 275789 275789 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C6%3BMQ%3D49%3BFQ%3D53%3BPV4%3D0.3%2C0.097%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1391 SAMTools SNP 277495 277495 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1391 SAMTools SNP 277549 277549 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1391 SAMTools SNP 281912 281912 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 281953 281953 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1391 SAMTools SNP 281977 281977 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0034%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1391 SAMTools SNP 282416 282416 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1391 SAMTools SNP 282422 282422 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold1391 SAMTools SNP 282677 282677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1391 SAMTools SNP 282852 282852 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1391 SAMTools SNP 283521 283521 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C3%2C10%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1.2e-23%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1391 SAMTools SNP 283648 283648 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.46%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C214:37 scaffold1391 SAMTools SNP 283762 283762 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C9.8e-11%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1391 SAMTools SNP 284727 284727 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C236:54 scaffold1391 SAMTools SNP 285156 285156 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C5%2C3%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1391 SAMTools SNP 292484 292484 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 293630 293630 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.26%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1391 SAMTools SNP 294017 294017 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C0.0018%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1391 SAMTools SNP 294580 294580 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.077%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1391 SAMTools SNP 296517 296517 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C0%2C11%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.17%2C6.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1391 SAMTools SNP 296998 296998 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.001%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1391 SAMTools SNP 299014 299014 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold1391 SAMTools SNP 302467 302467 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 304109 304109 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.3%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1391 SAMTools SNP 305022 305022 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1391 SAMTools SNP 305061 305061 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1391 SAMTools SNP 305151 305151 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C13%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1391 SAMTools SNP 306107 306107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 306302 306302 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.09%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 306534 306534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 307019 307019 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C0%2C12%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.00018%2C1%2C1%2C6.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1391 SAMTools SNP 307060 307060 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1391 SAMTools SNP 307471 307471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 307678 307678 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold1391 SAMTools SNP 307828 307828 42.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1391 SAMTools SNP 360289 360289 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1391 SAMTools SNP 360520 360520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1391 SAMTools SNP 360973 360973 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 361212 361212 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 361842 361842 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1391 SAMTools SNP 361980 361980 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1391 SAMTools SNP 362323 362323 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1391 SAMTools SNP 363610 363610 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.39%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C148:79 scaffold1391 SAMTools SNP 364079 364079 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1391 SAMTools SNP 364598 364598 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1391 SAMTools SNP 365536 365536 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1391 SAMTools SNP 365543 365543 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C108:99 scaffold1391 SAMTools SNP 365574 365574 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold1391 SAMTools SNP 365593 365593 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold1391 SAMTools SNP 365838 365838 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 365840 365840 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1391 SAMTools SNP 366085 366085 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 366149 366149 70.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C12%2C0:21 scaffold1391 SAMTools SNP 366365 366365 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1391 SAMTools SNP 366404 366404 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1391 SAMTools SNP 366698 366698 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1391 SAMTools SNP 366699 366699 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold1391 SAMTools SNP 366713 366713 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1391 SAMTools SNP 366767 366767 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1391 SAMTools SNP 366788 366788 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.45%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C204:99 scaffold1391 SAMTools SNP 366794 366794 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1391 SAMTools SNP 366956 366956 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1391 SAMTools SNP 366965 366965 55.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold1391 SAMTools SNP 367907 367907 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1391 SAMTools SNP 368097 368097 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1391 SAMTools SNP 368112 368112 63.8 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C23%2C17%2C94%2C0%2C91:10 scaffold1391 SAMTools SNP 368149 368149 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1391 SAMTools SNP 368561 368561 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 368615 368615 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1391 SAMTools SNP 368621 368621 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1391 SAMTools SNP 368656 368656 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1391 SAMTools SNP 369685 369685 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1391 SAMTools SNP 369872 369872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1391 SAMTools SNP 370183 370183 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C15%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C3.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C147:99 scaffold1391 SAMTools SNP 370321 370321 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.58%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C249:72 scaffold1391 SAMTools SNP 370333 370333 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C3.1e-16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C245:81 scaffold1391 SAMTools SNP 370378 370378 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.58%2C0.008%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1391 SAMTools SNP 370982 370982 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C12%2C0:21 scaffold1391 SAMTools SNP 370988 370988 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1391 SAMTools SNP 372294 372294 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C5%2C5%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.2%2C0.002%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1391 SAMTools SNP 372327 372327 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1391 SAMTools SNP 372694 372694 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C24%2C0:45 scaffold1391 SAMTools SNP 372993 372993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1391 SAMTools SNP 373026 373026 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C14:17 scaffold1391 SAMTools SNP 373053 373053 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1391 SAMTools SNP 373228 373228 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 373322 373322 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C9%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1391 SAMTools SNP 373818 373818 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C224:99 scaffold1391 SAMTools SNP 373830 373830 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.26%2C0.0046%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C174:99 scaffold1391 SAMTools SNP 374267 374267 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold1391 SAMTools SNP 374348 374348 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1391 SAMTools SNP 374548 374548 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0007%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.23%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C145:34 scaffold1391 SAMTools SNP 374552 374552 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C116:36 scaffold1391 SAMTools SNP 374644 374644 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1391 SAMTools SNP 375190 375190 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0017%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1391 SAMTools SNP 376844 376844 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.14%2C0.037%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C136:70 scaffold1391 SAMTools SNP 377219 377219 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1391 SAMTools SNP 377348 377348 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 377573 377573 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 378084 378084 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold1391 SAMTools SNP 379360 379360 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C0%2C34%3BMQ%3D50%3BFQ%3D195%3BPV4%3D9.5e-09%2C1%2C1%2C2.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1391 SAMTools SNP 379487 379487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1391 SAMTools SNP 379902 379902 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C48%2C0:93 scaffold1391 SAMTools SNP 379920 379920 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1391 SAMTools SNP 380000 380000 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.041%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1391 SAMTools SNP 380331 380331 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.004%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1391 SAMTools SNP 380380 380380 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1391 SAMTools SNP 380476 380476 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C39%2C0:75 scaffold1391 SAMTools SNP 381206 381206 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.054%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1391 SAMTools SNP 381847 381847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C14%2C9%3BMQ%3D40%3BFQ%3D225%3BPV4%3D1%2C0.5%2C0.16%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 382252 382252 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.14%2C0.02%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1391 SAMTools SNP 382691 382691 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1391 SAMTools SNP 382826 382826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1391 SAMTools SNP 383187 383187 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.005%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1391 SAMTools SNP 383205 383205 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1391 SAMTools SNP 383208 383208 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold1391 SAMTools SNP 383376 383376 73.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold1391 SAMTools SNP 383400 383400 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold1391 SAMTools SNP 383409 383409 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1391 SAMTools SNP 383709 383709 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C21%2C36%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.85%2C1.1e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1391 SAMTools SNP 384496 384496 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.23%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 384610 384610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C32%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1391 SAMTools SNP 384620 384620 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.43%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1391 SAMTools SNP 386311 386311 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1391 SAMTools SNP 386329 386329 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C238:99 scaffold1391 SAMTools SNP 386384 386384 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1391 SAMTools SNP 386411 386411 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C6%2C0:10 scaffold1391 SAMTools SNP 386875 386875 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold1391 SAMTools SNP 387593 387593 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1391 SAMTools SNP 387997 387997 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0021%2C0.09%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1391 SAMTools SNP 388022 388022 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1391 SAMTools SNP 388055 388055 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1391 SAMTools SNP 388109 388109 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1391 SAMTools SNP 388124 388124 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1391 SAMTools SNP 390414 390414 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.35%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 390435 390435 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.23%2C0.081%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1391 SAMTools SNP 390443 390443 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1391 SAMTools SNP 396988 396988 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D28.5%3BPV4%3D0.087%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C59:58 scaffold1391 SAMTools SNP 397248 397248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1391 SAMTools SNP 398483 398483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C91%2C16%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 398534 398534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C58%2C38%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 398703 398703 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C15%2C7%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-07%2C1%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1391 SAMTools SNP 400300 400300 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1091%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C57%2C0:99 scaffold1391 SAMTools SNP 400627 400627 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1391 SAMTools SNP 400975 400975 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C255%2C0:99 scaffold1391 SAMTools SNP 401329 401329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C39%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1391 SAMTools SNP 401545 401545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C47%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1391 SAMTools SNP 401619 401619 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C49%2C31%2C38%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.051%2C2.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1391 SAMTools SNP 401683 401683 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D700%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold1391 SAMTools SNP 401753 401753 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D602%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C312%2C31%2C192%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.033%2C3.5e-267%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1391 SAMTools SNP 402632 402632 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1391 SAMTools SNP 406618 406618 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1391 SAMTools SNP 413279 413279 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1391 SAMTools SNP 413300 413300 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1391 SAMTools SNP 439913 439913 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D5.64%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C36:32 scaffold1391 SAMTools SNP 439955 439955 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1391 SAMTools SNP 486483 486483 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold1391 SAMTools SNP 486633 486633 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C10%2C0%3BMQ%3D49%3BFQ%3D173%3BPV4%3D0.00015%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1391 SAMTools SNP 487093 487093 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D48%3BFQ%3D114%3BPV4%3D0.31%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C141:99 scaffold1393 SAMTools SNP 4382 4382 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1393 SAMTools SNP 4494 4494 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C39%2C0:75 scaffold1393 SAMTools SNP 4596 4596 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C42%2C0:81 scaffold1393 SAMTools SNP 4795 4795 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 8449 8449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1393 SAMTools SNP 8474 8474 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1393 SAMTools SNP 12244 12244 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1393 SAMTools SNP 12246 12246 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.32%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1393 SAMTools SNP 40065 40065 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1393 SAMTools SNP 41009 41009 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C203:43 scaffold1393 SAMTools SNP 47528 47528 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold1393 SAMTools SNP 51404 51404 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1393 SAMTools SNP 51599 51599 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold1393 SAMTools SNP 52141 52141 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1393 SAMTools SNP 52194 52194 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 52467 52467 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C39%2C0:74 scaffold1393 SAMTools SNP 52527 52527 13.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.071%2C9.2e-14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C8:11 scaffold1393 SAMTools SNP 53673 53673 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1393 SAMTools SNP 54256 54256 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold1393 SAMTools SNP 54442 54442 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1393 SAMTools SNP 54729 54729 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1393 SAMTools SNP 54786 54786 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1393 SAMTools SNP 55068 55068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1393 SAMTools SNP 55104 55104 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.28%2C0.094%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1393 SAMTools SNP 59132 59132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C13%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1393 SAMTools SNP 59182 59182 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 59421 59421 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1393 SAMTools SNP 59796 59796 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.061%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1393 SAMTools SNP 61170 61170 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.16%2C0.032%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1393 SAMTools SNP 61172 61172 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.2%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1393 SAMTools SNP 61412 61412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C4%2C59%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1393 SAMTools SNP 61819 61819 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 63079 63079 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1393 SAMTools SNP 63108 63108 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1393 SAMTools SNP 63439 63439 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1393 SAMTools SNP 63482 63482 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1393 SAMTools SNP 63717 63717 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1393 SAMTools SNP 63736 63736 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1393 SAMTools SNP 63757 63757 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1393 SAMTools SNP 67901 67901 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 67913 67913 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1393 SAMTools SNP 68753 68753 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1393 SAMTools SNP 68816 68816 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1393 SAMTools SNP 69084 69084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1393 SAMTools SNP 69117 69117 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1393 SAMTools SNP 69668 69668 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C207:36 scaffold1393 SAMTools SNP 72707 72707 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1393 SAMTools SNP 74384 74384 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C39%2C0:75 scaffold1393 SAMTools SNP 87461 87461 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C0%2C22%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C9.8e-17%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1393 SAMTools SNP 90741 90741 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C86:43 scaffold1393 SAMTools SNP 90762 90762 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1393 SAMTools SNP 96504 96504 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1393 SAMTools SNP 96511 96511 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1396 SAMTools SNP 15211 15211 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1396 SAMTools SNP 53854 53854 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1396 SAMTools SNP 57184 57184 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1396 SAMTools SNP 57468 57468 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1396 SAMTools SNP 77913 77913 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1396 SAMTools SNP 77961 77961 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1396 SAMTools SNP 78639 78639 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1396 SAMTools SNP 80708 80708 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1396 SAMTools SNP 80717 80717 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1396 SAMTools SNP 90515 90515 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C187:99 scaffold1396 SAMTools SNP 90542 90542 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C198:57 scaffold1396 SAMTools SNP 90813 90813 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D89%3BPV4%3D1%2C0.22%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C116:99 scaffold1396 SAMTools SNP 90857 90857 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1396 SAMTools SNP 90883 90883 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C18%2C3%3BMQ%3D49%3BFQ%3D98%3BPV4%3D0.085%2C1.3e-23%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1396 SAMTools SNP 91038 91038 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1396 SAMTools SNP 91482 91482 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1396 SAMTools SNP 104257 104257 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1397 SAMTools SNP 21985 21985 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 125524 125524 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 125589 125589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1397 SAMTools SNP 125705 125705 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1397 SAMTools SNP 125794 125794 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1397 SAMTools SNP 139948 139948 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C6%3BMQ%3D36%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1397 SAMTools SNP 143007 143007 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C11%2C17%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.12%2C4.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1397 SAMTools SNP 143067 143067 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1397 SAMTools SNP 143338 143338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C27%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1397 SAMTools SNP 143365 143365 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C17%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C117%2C0:99 scaffold1397 SAMTools SNP 143585 143585 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0019%2C1.2e-11%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1397 SAMTools SNP 143869 143869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C37%2C19%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold1397 SAMTools SNP 143911 143911 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1397 SAMTools SNP 144478 144478 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C39%2C0:75 scaffold1397 SAMTools SNP 215130 215130 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 215303 215303 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 216119 216119 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.013%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold1397 SAMTools SNP 216304 216304 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1397 SAMTools SNP 219974 219974 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold1397 SAMTools SNP 225779 225779 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1397 SAMTools SNP 225860 225860 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1397 SAMTools SNP 225863 225863 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1397 SAMTools SNP 225884 225884 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1397 SAMTools SNP 226420 226420 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1397 SAMTools SNP 226442 226442 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1397 SAMTools SNP 228872 228872 67.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold1397 SAMTools SNP 229335 229335 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 317682 317682 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold1397 SAMTools SNP 342086 342086 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C1%2C8%3BMQ%3D48%3BFQ%3D142%3BPV4%3D1%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1397 SAMTools SNP 342247 342247 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C0.072%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 342260 342260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C3%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 342725 342725 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 342857 342857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1397 SAMTools SNP 342860 342860 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1397 SAMTools SNP 343103 343103 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1397 SAMTools SNP 343123 343123 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1397 SAMTools SNP 343132 343132 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1397 SAMTools SNP 343151 343151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1397 SAMTools SNP 343498 343498 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1397 SAMTools SNP 343534 343534 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C65:68 scaffold1397 SAMTools SNP 344329 344329 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1397 SAMTools SNP 345306 345306 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1397 SAMTools SNP 345348 345348 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C187:99 scaffold1397 SAMTools SNP 345478 345478 35.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1397 SAMTools SNP 345866 345866 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.11%3BPV4%3D0.43%2C2.3e-07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C29:32 scaffold1397 SAMTools SNP 355072 355072 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 355417 355417 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 355450 355450 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 355722 355722 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 364090 364090 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C40:43 scaffold1397 SAMTools SNP 364640 364640 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1397 SAMTools SNP 366316 366316 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1397 SAMTools SNP 366317 366317 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1397 SAMTools SNP 366334 366334 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1397 SAMTools SNP 367005 367005 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 368265 368265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1397 SAMTools SNP 393694 393694 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C9%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.035%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1397 SAMTools SNP 393793 393793 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C220:51 scaffold1397 SAMTools SNP 394077 394077 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1397 SAMTools SNP 394111 394111 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1397 SAMTools SNP 394859 394859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1397 SAMTools SNP 395222 395222 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C54%2C0:99 scaffold1397 SAMTools SNP 395879 395879 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.7%2C8.9e-14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1397 SAMTools SNP 395882 395882 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C14%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.24%2C2.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C217:99 scaffold1397 SAMTools SNP 396545 396545 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C6.4e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1397 SAMTools SNP 396729 396729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1397 SAMTools SNP 396756 396756 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1397 SAMTools SNP 397083 397083 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.017%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1397 SAMTools SNP 397257 397257 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1397 SAMTools SNP 397757 397757 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 397944 397944 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C51%2C0:98 scaffold1397 SAMTools SNP 397959 397959 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C6.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C137:99 scaffold1397 SAMTools SNP 398024 398024 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1397 SAMTools SNP 398100 398100 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C13%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1397 SAMTools SNP 398648 398648 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.34%2C0.39%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1397 SAMTools SNP 398687 398687 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1397 SAMTools SNP 399353 399353 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 400175 400175 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1397 SAMTools SNP 400226 400226 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1397 SAMTools SNP 400376 400376 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 400394 400394 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 400573 400573 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1397 SAMTools SNP 400761 400761 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1397 SAMTools SNP 400926 400926 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1397 SAMTools SNP 401166 401166 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1397 SAMTools SNP 401217 401217 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1397 SAMTools SNP 401435 401435 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0014%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1397 SAMTools SNP 401457 401457 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold1397 SAMTools SNP 401471 401471 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1397 SAMTools SNP 401485 401485 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0082%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold1397 SAMTools SNP 401539 401539 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1397 SAMTools SNP 401748 401748 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1397 SAMTools SNP 402056 402056 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold1397 SAMTools SNP 402241 402241 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1397 SAMTools SNP 402625 402625 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1397 SAMTools SNP 402792 402792 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1397 SAMTools SNP 402796 402796 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1397 SAMTools SNP 403269 403269 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1397 SAMTools SNP 403315 403315 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1397 SAMTools SNP 403452 403452 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1397 SAMTools SNP 403458 403458 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1397 SAMTools SNP 404226 404226 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1397 SAMTools SNP 404317 404317 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1397 SAMTools SNP 404453 404453 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1397 SAMTools SNP 404463 404463 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1397 SAMTools SNP 404501 404501 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C6.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C156:46 scaffold1397 SAMTools SNP 404546 404546 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1397 SAMTools SNP 404580 404580 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1397 SAMTools SNP 405351 405351 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1397 SAMTools SNP 405513 405513 193 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C29%2C230%2C0%2C227:33 scaffold1397 SAMTools SNP 405559 405559 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1397 SAMTools SNP 406099 406099 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C132:99 scaffold1397 SAMTools SNP 406303 406303 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1397 SAMTools SNP 406510 406510 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1397 SAMTools SNP 406938 406938 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1397 SAMTools SNP 406974 406974 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.19%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C121:99 scaffold1397 SAMTools SNP 407333 407333 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold1397 SAMTools SNP 408075 408075 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold1397 SAMTools SNP 408693 408693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1397 SAMTools SNP 408728 408728 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C0%2C34%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.1%2C0.00011%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1397 SAMTools SNP 409215 409215 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00065%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C77:36 scaffold1397 SAMTools SNP 409744 409744 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1397 SAMTools SNP 409924 409924 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1397 SAMTools SNP 410232 410232 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C167:31 scaffold1397 SAMTools SNP 410921 410921 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C32:35 scaffold1397 SAMTools SNP 413902 413902 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C4%3BMQ%3D43%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1397 SAMTools SNP 416422 416422 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C4%2C6%3BMQ%3D35%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C208:99 scaffold1397 SAMTools SNP 417438 417438 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C20%2C14%3BMQ%3D37%3BFQ%3D49%3BPV4%3D0.47%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C76:79 scaffold1397 SAMTools SNP 417468 417468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D45%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1397 SAMTools SNP 417789 417789 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1397 SAMTools SNP 417801 417801 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1397 SAMTools SNP 418118 418118 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C126:99 scaffold1397 SAMTools SNP 424204 424204 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D30%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C102%2C0:99 scaffold1397 SAMTools SNP 426209 426209 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1397 SAMTools SNP 426240 426240 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1397 SAMTools SNP 426498 426498 17.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1397 SAMTools SNP 426925 426925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1397 SAMTools SNP 426940 426940 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C234:99 scaffold1397 SAMTools SNP 430449 430449 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0062%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1397 SAMTools SNP 430471 430471 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.45%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1397 SAMTools SNP 430652 430652 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C24%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1397 SAMTools SNP 430670 430670 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C35%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1397 SAMTools SNP 431748 431748 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C24%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.39%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 431978 431978 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C12%2C36%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 432029 432029 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C31%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C9.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 432044 432044 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C57%2C0%2C32%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1397 SAMTools SNP 432059 432059 204 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C58%2C1%2C32%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1397 SAMTools SNP 432411 432411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1397 SAMTools SNP 433173 433173 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C14%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.44%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 433251 433251 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C4%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.7%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1397 SAMTools SNP 433278 433278 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1397 SAMTools SNP 435582 435582 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1397 SAMTools SNP 435600 435600 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1397 SAMTools SNP 436088 436088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C40%2C34%2C32%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.085%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1397 SAMTools SNP 436422 436422 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C34%3BMQ%3D45%3BFQ%3D194%3BPV4%3D1%2C0.0028%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C221:99 scaffold1397 SAMTools SNP 436468 436468 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.17%2C0.33%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1397 SAMTools SNP 446231 446231 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1397 SAMTools SNP 453636 453636 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1397 SAMTools SNP 453946 453946 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1397 SAMTools SNP 478431 478431 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1397 SAMTools SNP 478486 478486 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold1397 SAMTools SNP 479505 479505 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1397 SAMTools SNP 479581 479581 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1397 SAMTools SNP 479615 479615 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1397 SAMTools SNP 479628 479628 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1397 SAMTools SNP 479642 479642 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0195%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold1397 SAMTools SNP 479963 479963 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C96:99 scaffold1397 SAMTools SNP 480028 480028 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C16%3BMQ%3D47%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C102%2C0:99 scaffold1397 SAMTools SNP 489467 489467 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D15%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C69%2C0:97 scaffold1399 SAMTools SNP 46 46 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1399 SAMTools SNP 11492 11492 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1399 SAMTools SNP 14274 14274 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold1399 SAMTools SNP 24895 24895 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold1399 SAMTools SNP 31578 31578 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C60%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C199%2C0:99 scaffold1399 SAMTools SNP 31730 31730 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C11%2C19%2C117%3BMQ%3D50%3BFQ%3D-130%3BPV4%3D0.36%2C1.5e-101%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C103%2C0:99 scaffold1399 SAMTools SNP 31962 31962 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C48%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C151%2C0:99 scaffold1399 SAMTools SNP 33140 33140 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1399 SAMTools SNP 43578 43578 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold1399 SAMTools SNP 43605 43605 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1399 SAMTools SNP 45180 45180 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C21:24 scaffold1399 SAMTools SNP 46269 46269 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C109:36 scaffold1399 SAMTools SNP 46272 46272 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1399 SAMTools SNP 47996 47996 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1399 SAMTools SNP 48227 48227 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1399 SAMTools SNP 48251 48251 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1399 SAMTools SNP 48262 48262 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1399 SAMTools SNP 48326 48326 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold1399 SAMTools SNP 49292 49292 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 49302 49302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 49373 49373 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1399 SAMTools SNP 49407 49407 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C4.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 49458 49458 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1399 SAMTools SNP 50326 50326 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1399 SAMTools SNP 50947 50947 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1399 SAMTools SNP 71885 71885 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C30%2C9%3BMQ%3D39%3BFQ%3D189%3BPV4%3D0.00059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1399 SAMTools SNP 72423 72423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1399 SAMTools SNP 72434 72434 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.00043%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 72464 72464 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.064%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 85270 85270 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1399 SAMTools SNP 85301 85301 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1399 SAMTools SNP 110667 110667 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold1399 SAMTools SNP 111047 111047 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1399 SAMTools SNP 111050 111050 92.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1399 SAMTools SNP 111073 111073 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C0%2C8%3BMQ%3D48%3BFQ%3D19.1%3BPV4%3D0.084%2C0.0024%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1399 SAMTools SNP 113735 113735 39.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C1%2C12%2C1%3BMQ%3D15%3BFQ%3D-35%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C8%2C0:14 scaffold1399 SAMTools SNP 130472 130472 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1399 SAMTools SNP 130498 130498 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D19%3BFQ%3D-29%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C2%2C0:4 scaffold1399 SAMTools SNP 132181 132181 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D20%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C17:20 scaffold1399 SAMTools SNP 136149 136149 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C37%2C7%3BMQ%3D46%3BFQ%3D49%3BPV4%3D0.57%2C0.39%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C76:79 scaffold1399 SAMTools SNP 136194 136194 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C2%2C39%3BMQ%3D48%3BFQ%3D225%3BPV4%3D9.2e-09%2C0.47%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 136706 136706 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D50%2C24%2C0%2C8%3BMQ%3D11%3BFQ%3D-166%3BPV4%3D0.0003%2C1.3e-12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C139%2C0:99 scaffold1399 SAMTools SNP 137501 137501 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C2%2C264%3BMQ%3D2%3BFQ%3D-282%3BPV4%3D1%2C0.16%2C0.41%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C255%2C0:96 scaffold1399 SAMTools SNP 138198 138198 5.85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D20%3BFQ%3D-29%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C2%2C0:3 scaffold1399 SAMTools SNP 156706 156706 44.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C2%2C0:5 scaffold1399 SAMTools SNP 157048 157048 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C33%2C2%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 158283 158283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C54%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1399 SAMTools SNP 158672 158672 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C10%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1399 SAMTools SNP 158680 158680 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C10%3BMQ%3D45%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1399 SAMTools SNP 160908 160908 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C40%2C44%2C98%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.051%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 160980 160980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C44%2C11%2C24%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1399 SAMTools SNP 169552 169552 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D48%3BFQ%3D10.4%3BPV4%3D1%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C129:39 scaffold140 SAMTools SNP 58454 58454 39.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold140 SAMTools SNP 178039 178039 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C52%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C169%2C0:99 scaffold140 SAMTools SNP 178480 178480 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.3%2C1.5e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold140 SAMTools SNP 178777 178777 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold140 SAMTools SNP 178816 178816 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold140 SAMTools SNP 179559 179559 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold140 SAMTools SNP 181611 181611 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C340%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold140 SAMTools SNP 182065 182065 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C220%2C18%2C122%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 182994 182994 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0:39 scaffold140 SAMTools SNP 183732 183732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C249%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold140 SAMTools SNP 183756 183756 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold140 SAMTools SNP 183780 183780 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold140 SAMTools SNP 184231 184231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C181%2C116%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-11%2C0.0018%2C1%2C7.9e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 184297 184297 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C67%2C81%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 184472 184472 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C125%2C25%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 184568 184568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C73%2C41%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 185382 185382 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.43%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 186108 186108 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.07%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold140 SAMTools SNP 186202 186202 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold140 SAMTools SNP 186229 186229 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.12%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold140 SAMTools SNP 186674 186674 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold140 SAMTools SNP 187467 187467 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 187480 187480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 188191 188191 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold140 SAMTools SNP 188421 188421 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold140 SAMTools SNP 188431 188431 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold140 SAMTools SNP 188488 188488 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C11%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold140 SAMTools SNP 189245 189245 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 189467 189467 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold140 SAMTools SNP 189500 189500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold140 SAMTools SNP 189657 189657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold140 SAMTools SNP 189663 189663 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold140 SAMTools SNP 189751 189751 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C93%2C0:99 scaffold140 SAMTools SNP 189896 189896 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold140 SAMTools SNP 190172 190172 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C33%2C0:63 scaffold140 SAMTools SNP 190323 190323 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold140 SAMTools SNP 190599 190599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 190621 190621 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 190681 190681 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C32%2C17%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.34%2C1.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold140 SAMTools SNP 190735 190735 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C46%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 190913 190913 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C49%2C25%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 190983 190983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C15%2C50%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 191185 191185 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold140 SAMTools SNP 191246 191246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold140 SAMTools SNP 191635 191635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C9%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 191747 191747 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold140 SAMTools SNP 192346 192346 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold140 SAMTools SNP 192376 192376 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold140 SAMTools SNP 193764 193764 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold140 SAMTools SNP 194032 194032 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C67:70 scaffold140 SAMTools SNP 194181 194181 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold140 SAMTools SNP 194197 194197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 195149 195149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C66%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold140 SAMTools SNP 196634 196634 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold140 SAMTools SNP 197613 197613 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C5.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C241:99 scaffold140 SAMTools SNP 198929 198929 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C81%2C0:99 scaffold140 SAMTools SNP 199151 199151 14.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold140 SAMTools SNP 200626 200626 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold140 SAMTools SNP 200920 200920 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.094%2C0.0076%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold140 SAMTools SNP 201420 201420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 201498 201498 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.68%2C4.8e-07%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold140 SAMTools SNP 201567 201567 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C4.9e-30%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold140 SAMTools SNP 201782 201782 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.3%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold140 SAMTools SNP 201787 201787 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.3%2C0.052%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold140 SAMTools SNP 201857 201857 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold140 SAMTools SNP 202647 202647 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C0%3BMQ%3D48%3BFQ%3D120%3BPV4%3D0.53%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold140 SAMTools SNP 203165 203165 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.13%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 203539 203539 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0014%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold140 SAMTools SNP 203602 203602 165 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.32%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C60:63 scaffold140 SAMTools SNP 204364 204364 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C10%2C20%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.079%2C2.6e-22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold140 SAMTools SNP 213642 213642 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold140 SAMTools SNP 213751 213751 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C6%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold140 SAMTools SNP 214090 214090 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C18%2C0:33 scaffold140 SAMTools SNP 216568 216568 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.34%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C133:75 scaffold140 SAMTools SNP 216569 216569 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold140 SAMTools SNP 216633 216633 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 233894 233894 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 235651 235651 54.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold140 SAMTools SNP 235785 235785 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C2.3e-07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold140 SAMTools SNP 235930 235930 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 236242 236242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold140 SAMTools SNP 236548 236548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C56%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold140 SAMTools SNP 236576 236576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold140 SAMTools SNP 236796 236796 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold140 SAMTools SNP 236955 236955 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold140 SAMTools SNP 237334 237334 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.052%2C2.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C102:99 scaffold140 SAMTools SNP 237372 237372 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold140 SAMTools SNP 265978 265978 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 266015 266015 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 266033 266033 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 268491 268491 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold140 SAMTools SNP 268500 268500 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold140 SAMTools SNP 268859 268859 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 268941 268941 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 269185 269185 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold140 SAMTools SNP 269872 269872 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.53%2C0.0043%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold140 SAMTools SNP 269893 269893 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold140 SAMTools SNP 269920 269920 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 272827 272827 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 274307 274307 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C219:51 scaffold140 SAMTools SNP 274571 274571 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.029%2C1.5e-16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C194:96 scaffold140 SAMTools SNP 274649 274649 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold140 SAMTools SNP 274973 274973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C7%2C15%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.012%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold140 SAMTools SNP 275393 275393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold140 SAMTools SNP 275426 275426 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 275465 275465 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold140 SAMTools SNP 275474 275474 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold140 SAMTools SNP 276106 276106 72.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C171%2C150%2C233%2C0%2C218:39 scaffold140 SAMTools SNP 276142 276142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C84%2C0%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold140 SAMTools SNP 276361 276361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C37%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold140 SAMTools SNP 276478 276478 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D48%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.34%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold140 SAMTools SNP 276490 276490 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C8%2C32%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.047%2C1%2C1%2C2.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold140 SAMTools SNP 277289 277289 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C7%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold140 SAMTools SNP 277313 277313 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.54%2C0.0082%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold140 SAMTools SNP 277319 277319 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 277874 277874 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C84%2C17%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1.3e-15%2C7.7e-16%2C1%2C8.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold140 SAMTools SNP 278002 278002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 278011 278011 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold140 SAMTools SNP 279254 279254 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold140 SAMTools SNP 279278 279278 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 282072 282072 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.082%2C1%2C1%2C1.4e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold140 SAMTools SNP 282515 282515 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.34%2C0.13%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 282550 282550 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C10%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.032%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 283655 283655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C4.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 283658 283658 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 285067 285067 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C204:43 scaffold140 SAMTools SNP 285088 285088 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C105:54 scaffold140 SAMTools SNP 288168 288168 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C30%2C21%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.067%2C1%2C0.0035%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 288232 288232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C86%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold140 SAMTools SNP 291144 291144 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold140 SAMTools SNP 291976 291976 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 292514 292514 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold140 SAMTools SNP 292538 292538 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold140 SAMTools SNP 293524 293524 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold140 SAMTools SNP 293651 293651 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold140 SAMTools SNP 294050 294050 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.9e-19%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold140 SAMTools SNP 297909 297909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 297965 297965 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold140 SAMTools SNP 297966 297966 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C244:54 scaffold140 SAMTools SNP 298833 298833 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C211:49 scaffold140 SAMTools SNP 298920 298920 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C7.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold140 SAMTools SNP 298998 298998 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.22%2C0.00014%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C230:99 scaffold140 SAMTools SNP 305880 305880 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 305947 305947 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold140 SAMTools SNP 307655 307655 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C130:46 scaffold140 SAMTools SNP 307657 307657 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.027%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C115:70 scaffold140 SAMTools SNP 307667 307667 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C128:74 scaffold140 SAMTools SNP 307677 307677 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold140 SAMTools SNP 308128 308128 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold140 SAMTools SNP 315237 315237 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold140 SAMTools SNP 315503 315503 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C36%2C0:69 scaffold140 SAMTools SNP 316091 316091 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.47%2C6.2e-14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C193:63 scaffold140 SAMTools SNP 316539 316539 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold140 SAMTools SNP 317271 317271 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C178:44 scaffold140 SAMTools SNP 317870 317870 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C60%2C0:99 scaffold140 SAMTools SNP 317972 317972 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.62%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold140 SAMTools SNP 319129 319129 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C75%2C0:99 scaffold140 SAMTools SNP 321374 321374 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C230:34 scaffold140 SAMTools SNP 322243 322243 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold140 SAMTools SNP 323286 323286 64.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold140 SAMTools SNP 323574 323574 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0:63 scaffold140 SAMTools SNP 323643 323643 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 323713 323713 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold140 SAMTools SNP 323908 323908 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold140 SAMTools SNP 323918 323918 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold140 SAMTools SNP 324377 324377 50.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold140 SAMTools SNP 324404 324404 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold140 SAMTools SNP 345539 345539 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 345553 345553 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 356030 356030 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 356032 356032 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold140 SAMTools SNP 356033 356033 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold140 SAMTools SNP 356055 356055 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold140 SAMTools SNP 356262 356262 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold140 SAMTools SNP 356477 356477 82 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C119%2C110%2C119%2C0%2C110:16 scaffold140 SAMTools SNP 356905 356905 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold140 SAMTools SNP 356930 356930 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold140 SAMTools SNP 357130 357130 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold140 SAMTools SNP 358320 358320 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold140 SAMTools SNP 362562 362562 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold140 SAMTools SNP 416444 416444 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold140 SAMTools SNP 416501 416501 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold140 SAMTools SNP 418313 418313 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold140 SAMTools SNP 418912 418912 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 418945 418945 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 419331 419331 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 420899 420899 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C12%2C155%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 421189 421189 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C255%2C0:99 scaffold140 SAMTools SNP 423472 423472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 423484 423484 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 423497 423497 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 423508 423508 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 423689 423689 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C7.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 423725 423725 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C48%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 425055 425055 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C33%2C0:63 scaffold140 SAMTools SNP 471051 471051 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold140 SAMTools SNP 472733 472733 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold140 SAMTools SNP 472738 472738 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold140 SAMTools SNP 487283 487283 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold140 SAMTools SNP 488681 488681 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold140 SAMTools SNP 499356 499356 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold140 SAMTools SNP 558092 558092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 558139 558139 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold140 SAMTools SNP 570584 570584 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 570754 570754 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C30%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.13%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold140 SAMTools SNP 573703 573703 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C58%2C34%2C5%3BMQ%3D46%3BFQ%3D60%3BPV4%3D0.00059%2C1%2C0.12%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold140 SAMTools SNP 578366 578366 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C4%2C34%2C71%3BMQ%3D47%3BFQ%3D-221%3BPV4%3D0.44%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C194%2C0:99 scaffold140 SAMTools SNP 578751 578751 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold140 SAMTools SNP 597828 597828 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D2%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C190%2C0:99 scaffold140 SAMTools SNP 598287 598287 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C60%2C38%2C78%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.099%2C0.073%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 598326 598326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C35%2C43%2C22%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.23%2C0.29%2C5.2e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 600900 600900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C36%2C111%2C39%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 601623 601623 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C167%2C16%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C5.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 605356 605356 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C73%2C23%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold140 SAMTools SNP 606541 606541 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold140 SAMTools SNP 607130 607130 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.7e-18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C205:78 scaffold140 SAMTools SNP 607753 607753 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold140 SAMTools SNP 607913 607913 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0115%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C0.046%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C28:31 scaffold140 SAMTools SNP 608183 608183 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold140 SAMTools SNP 608249 608249 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C60%2C0%2C17%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold140 SAMTools SNP 608253 608253 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C58%3BMQ%3D50%3BFQ%3D-139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C112%2C0:99 scaffold140 SAMTools SNP 608494 608494 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C37%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.14%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C94:97 scaffold140 SAMTools SNP 608495 608495 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C20%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C116:63 scaffold140 SAMTools SNP 609647 609647 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold140 SAMTools SNP 614476 614476 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C244:84 scaffold140 SAMTools SNP 615055 615055 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.34%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C236:87 scaffold140 SAMTools SNP 615166 615166 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold140 SAMTools SNP 615175 615175 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0036%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold140 SAMTools SNP 616131 616131 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C27%2C0:51 scaffold140 SAMTools SNP 617025 617025 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold140 SAMTools SNP 632054 632054 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold140 SAMTools SNP 632536 632536 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 5874 5874 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 5877 5877 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 5964 5964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 5966 5966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 22434 22434 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.8e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C212:67 scaffold1402 SAMTools SNP 22618 22618 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.28%2C0.22%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1402 SAMTools SNP 23566 23566 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C9%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.11%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1402 SAMTools SNP 24970 24970 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C56%2C5%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1402 SAMTools SNP 25000 25000 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C36%2C40%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.07%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1402 SAMTools SNP 25167 25167 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C22%2C12%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.12%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1402 SAMTools SNP 25201 25201 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C7%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.047%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1402 SAMTools SNP 25272 25272 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C36%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1402 SAMTools SNP 34755 34755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1402 SAMTools SNP 34776 34776 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D562%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D287%2C43%2C157%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.1e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 35209 35209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D679%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C347%2C305%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1402 SAMTools SNP 35223 35223 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D646%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C222%2C112%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.099%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 35265 35265 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D802%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D206%2C222%2C202%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C7.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 35515 35515 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D764%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C476%2C275%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1402 SAMTools SNP 36424 36424 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1402 SAMTools SNP 36538 36538 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C78%2C0:99 scaffold1402 SAMTools SNP 36616 36616 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1402 SAMTools SNP 36859 36859 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1402 SAMTools SNP 36883 36883 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1402 SAMTools SNP 37550 37550 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1402 SAMTools SNP 38022 38022 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.46%2C0.013%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C188:75 scaffold1402 SAMTools SNP 38565 38565 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1402 SAMTools SNP 38586 38586 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 38652 38652 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1402 SAMTools SNP 38877 38877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C238%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1402 SAMTools SNP 39236 39236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1402 SAMTools SNP 39407 39407 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1402 SAMTools SNP 39413 39413 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1402 SAMTools SNP 39787 39787 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.08%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C169:99 scaffold1402 SAMTools SNP 39817 39817 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0012%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1402 SAMTools SNP 39874 39874 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.54%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold1402 SAMTools SNP 40431 40431 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.033%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1402 SAMTools SNP 40435 40435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1402 SAMTools SNP 40469 40469 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1402 SAMTools SNP 40478 40478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1402 SAMTools SNP 40502 40502 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 41596 41596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C24%2C40%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 41956 41956 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C30%2C84%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.41%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 42150 42150 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C21%2C23%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00023%2C6.9e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1402 SAMTools SNP 43196 43196 74.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1402 SAMTools SNP 43724 43724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1402 SAMTools SNP 43742 43742 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C35%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1402 SAMTools SNP 43778 43778 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C31%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.21%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1402 SAMTools SNP 44097 44097 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C79%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1402 SAMTools SNP 44154 44154 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 45177 45177 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 45238 45238 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1402 SAMTools SNP 46016 46016 62.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold1402 SAMTools SNP 46049 46049 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1402 SAMTools SNP 46215 46215 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0016%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C144:48 scaffold1402 SAMTools SNP 46241 46241 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold1402 SAMTools SNP 46430 46430 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.51%2C7.9e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C234:99 scaffold1402 SAMTools SNP 51384 51384 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1402 SAMTools SNP 54045 54045 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.28%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C88:70 scaffold1402 SAMTools SNP 54138 54138 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1402 SAMTools SNP 54153 54153 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.26%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1402 SAMTools SNP 54462 54462 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1402 SAMTools SNP 54501 54501 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1402 SAMTools SNP 54537 54537 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1402 SAMTools SNP 55366 55366 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1402 SAMTools SNP 55368 55368 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1402 SAMTools SNP 55429 55429 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold1402 SAMTools SNP 55447 55447 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1402 SAMTools SNP 55952 55952 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C61:64 scaffold1402 SAMTools SNP 55961 55961 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C0.012%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1402 SAMTools SNP 56329 56329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1402 SAMTools SNP 58809 58809 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 58918 58918 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1402 SAMTools SNP 58928 58928 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.042%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1402 SAMTools SNP 59357 59357 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1402 SAMTools SNP 59372 59372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1402 SAMTools SNP 60131 60131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1402 SAMTools SNP 60295 60295 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1402 SAMTools SNP 60942 60942 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C152:99 scaffold1402 SAMTools SNP 61367 61367 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold1402 SAMTools SNP 61466 61466 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1402 SAMTools SNP 61818 61818 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 66296 66296 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1402 SAMTools SNP 66978 66978 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 66990 66990 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1402 SAMTools SNP 70141 70141 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1402 SAMTools SNP 70159 70159 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1402 SAMTools SNP 70694 70694 142 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold1402 SAMTools SNP 71201 71201 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1402 SAMTools SNP 71299 71299 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1402 SAMTools SNP 71527 71527 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1402 SAMTools SNP 71567 71567 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1402 SAMTools SNP 71921 71921 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1402 SAMTools SNP 71939 71939 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 72005 72005 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 75416 75416 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1402 SAMTools SNP 83833 83833 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1402 SAMTools SNP 84124 84124 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.29%2C4.8e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C236:62 scaffold1402 SAMTools SNP 84493 84493 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1402 SAMTools SNP 84685 84685 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.4e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C74:55 scaffold1402 SAMTools SNP 84796 84796 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.2%2C0.02%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C181:74 scaffold1402 SAMTools SNP 85565 85565 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1402 SAMTools SNP 85814 85814 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 85847 85847 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1402 SAMTools SNP 90649 90649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1402 SAMTools SNP 90679 90679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1402 SAMTools SNP 90743 90743 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1402 SAMTools SNP 109258 109258 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold1402 SAMTools SNP 122975 122975 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1402 SAMTools SNP 123002 123002 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1402 SAMTools SNP 154418 154418 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C63%2C0:99 scaffold1402 SAMTools SNP 154478 154478 66.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1402 SAMTools SNP 155671 155671 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1402 SAMTools SNP 155696 155696 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 166688 166688 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.43%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C184:68 scaffold1402 SAMTools SNP 166978 166978 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold1402 SAMTools SNP 172644 172644 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1402 SAMTools SNP 185234 185234 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3449%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C14%2C90%2C9%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D3.6e-11%2C1.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C25%2C0:46 scaffold1402 SAMTools SNP 185349 185349 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2414%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1127%2C2%2C1258%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 237947 237947 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1402 SAMTools SNP 238155 238155 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1402 SAMTools SNP 238239 238239 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold1402 SAMTools SNP 238254 238254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C0.35%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1402 SAMTools SNP 238542 238542 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.58%2C0.0026%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1402 SAMTools SNP 238633 238633 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C102:99 scaffold1402 SAMTools SNP 239111 239111 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0048%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1402 SAMTools SNP 239482 239482 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1402 SAMTools SNP 239485 239485 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1402 SAMTools SNP 239661 239661 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1402 SAMTools SNP 241052 241052 208 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14%2C253%2C0%2C250:63 scaffold1402 SAMTools SNP 243600 243600 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.51%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1402 SAMTools SNP 243603 243603 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.51%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1402 SAMTools SNP 243648 243648 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1402 SAMTools SNP 243669 243669 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1402 SAMTools SNP 243723 243723 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1402 SAMTools SNP 245318 245318 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1402 SAMTools SNP 269626 269626 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1402 SAMTools SNP 273855 273855 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1402 SAMTools SNP 289050 289050 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1402 SAMTools SNP 289129 289129 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1402 SAMTools SNP 299696 299696 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.52%2C0.00043%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1402 SAMTools SNP 299802 299802 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.7e-19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C238:54 scaffold1402 SAMTools SNP 304204 304204 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C10%3BMQ%3D48%3BFQ%3D40%3BPV4%3D0.23%2C6.1e-09%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C67:70 scaffold1402 SAMTools SNP 374080 374080 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1402 SAMTools SNP 384607 384607 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C4.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C223:96 scaffold1402 SAMTools SNP 384623 384623 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1402 SAMTools SNP 386476 386476 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.046%2C0.0064%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1402 SAMTools SNP 386495 386495 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C1%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1402 SAMTools SNP 387993 387993 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C235:99 scaffold1402 SAMTools SNP 388574 388574 181 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.56%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C177:99 scaffold1402 SAMTools SNP 388600 388600 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C7.2e-10%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C201:51 scaffold1402 SAMTools SNP 388633 388633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1402 SAMTools SNP 389579 389579 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1402 SAMTools SNP 390109 390109 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1402 SAMTools SNP 390133 390133 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C26%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C244%2C0:99 scaffold1402 SAMTools SNP 390217 390217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1402 SAMTools SNP 390798 390798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C56%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1402 SAMTools SNP 390867 390867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1402 SAMTools SNP 391819 391819 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1402 SAMTools SNP 392408 392408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1402 SAMTools SNP 438202 438202 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.049%2C1.8e-17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1402 SAMTools SNP 438816 438816 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D49%3BFQ%3D31%3BPV4%3D1%2C0.00052%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C230:61 scaffold1402 SAMTools SNP 438943 438943 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C2.3e-08%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C60:63 scaffold1402 SAMTools SNP 439865 439865 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold1402 SAMTools SNP 454535 454535 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1402 SAMTools SNP 456278 456278 9.93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold1402 SAMTools SNP 456424 456424 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1402 SAMTools SNP 456895 456895 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1402 SAMTools SNP 456916 456916 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1402 SAMTools SNP 456932 456932 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C158:68 scaffold1402 SAMTools SNP 457483 457483 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1402 SAMTools SNP 457951 457951 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D0.14%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C218:43 scaffold1402 SAMTools SNP 458731 458731 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.45%2C3.4e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C214:39 scaffold1402 SAMTools SNP 459221 459221 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1402 SAMTools SNP 473134 473134 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1403 SAMTools SNP 13775 13775 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1403 SAMTools SNP 13909 13909 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D48%3BFQ%3D22%3BPV4%3D1%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C229:52 scaffold1403 SAMTools SNP 36162 36162 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 40754 40754 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1403 SAMTools SNP 84237 84237 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 85864 85864 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D7.8e-09%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1403 SAMTools SNP 85945 85945 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C44%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 85954 85954 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C53%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 86659 86659 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1403 SAMTools SNP 86661 86661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 86729 86729 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1403 SAMTools SNP 87123 87123 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 87237 87237 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1403 SAMTools SNP 88163 88163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 88210 88210 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1403 SAMTools SNP 88250 88250 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C20%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C2.1e-22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C152:99 scaffold1403 SAMTools SNP 88301 88301 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1403 SAMTools SNP 88520 88520 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1403 SAMTools SNP 89857 89857 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1403 SAMTools SNP 91950 91950 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1403 SAMTools SNP 92354 92354 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 92897 92897 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1403 SAMTools SNP 98390 98390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1403 SAMTools SNP 98411 98411 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1403 SAMTools SNP 98581 98581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 104979 104979 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1403 SAMTools SNP 110526 110526 176 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D1722%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C78%2C0%2C204%2C59%2C201:99 scaffold1403 SAMTools SNP 115601 115601 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.021%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C212:99 scaffold1403 SAMTools SNP 117691 117691 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1403 SAMTools SNP 117914 117914 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1403 SAMTools SNP 121544 121544 18.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold1403 SAMTools SNP 123548 123548 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C332%2C29%2C265%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1403 SAMTools SNP 125773 125773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C113%2C62%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 127443 127443 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D249%2C96%2C63%2C35%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.13%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1403 SAMTools SNP 127483 127483 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C73%2C16%2C23%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0075%2C0.014%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1403 SAMTools SNP 127544 127544 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1403 SAMTools SNP 128455 128455 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C122%2C50%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 133823 133823 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.9e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C227:60 scaffold1403 SAMTools SNP 136350 136350 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1403 SAMTools SNP 136438 136438 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.39%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C223:99 scaffold1403 SAMTools SNP 139904 139904 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 140579 140579 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1403 SAMTools SNP 140936 140936 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1403 SAMTools SNP 141117 141117 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C24%2C0:45 scaffold1403 SAMTools SNP 142365 142365 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 143673 143673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 143709 143709 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C3%3BMQ%3D47%3BFQ%3D121%3BPV4%3D0.69%2C3.9e-07%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1403 SAMTools SNP 143784 143784 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold1403 SAMTools SNP 147052 147052 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C47%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C235%2C0:99 scaffold1403 SAMTools SNP 147112 147112 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C16%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1403 SAMTools SNP 148737 148737 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1403 SAMTools SNP 150429 150429 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 151490 151490 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 151791 151791 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1403 SAMTools SNP 152863 152863 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1403 SAMTools SNP 163962 163962 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1403 SAMTools SNP 164019 164019 46.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1403 SAMTools SNP 165255 165255 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 165265 165265 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 186908 186908 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 187482 187482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1403 SAMTools SNP 187692 187692 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1403 SAMTools SNP 187737 187737 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 188021 188021 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 242357 242357 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C12%2C0%3BMQ%3D26%3BFQ%3D61%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C146:91 scaffold1403 SAMTools SNP 242623 242623 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C18%2C0%3BMQ%3D23%3BFQ%3D68%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C140:98 scaffold1403 SAMTools SNP 301969 301969 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 339354 339354 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 339356 339356 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 386784 386784 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1403 SAMTools SNP 386785 386785 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1403 SAMTools SNP 393146 393146 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1403 SAMTools SNP 393155 393155 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1403 SAMTools SNP 410678 410678 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold1403 SAMTools SNP 410690 410690 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.083%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1403 SAMTools SNP 411149 411149 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1403 SAMTools SNP 412034 412034 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1403 SAMTools SNP 412479 412479 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1403 SAMTools SNP 412509 412509 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1403 SAMTools SNP 412515 412515 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1403 SAMTools SNP 413872 413872 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1403 SAMTools SNP 414661 414661 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 416473 416473 56.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1403 SAMTools SNP 416484 416484 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1403 SAMTools SNP 416537 416537 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1403 SAMTools SNP 419330 419330 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C255%2C0:99 scaffold1403 SAMTools SNP 419492 419492 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C38%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C225:55 scaffold1403 SAMTools SNP 419624 419624 22.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1403 SAMTools SNP 420249 420249 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C195%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1403 SAMTools SNP 420254 420254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1403 SAMTools SNP 421105 421105 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C80%2C3%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-06%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 421121 421121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C84%2C32%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-10%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 421153 421153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1403 SAMTools SNP 421483 421483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 421729 421729 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C62%2C5%2C8%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0011%2C0.22%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1403 SAMTools SNP 421735 421735 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C61%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1403 SAMTools SNP 421774 421774 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C58%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1403 SAMTools SNP 422355 422355 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1403 SAMTools SNP 422374 422374 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C51%2C0:99 scaffold1403 SAMTools SNP 425479 425479 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1403 SAMTools SNP 426905 426905 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1403 SAMTools SNP 426981 426981 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1403 SAMTools SNP 432652 432652 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1403 SAMTools SNP 442212 442212 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 442240 442240 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1403 SAMTools SNP 442571 442571 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1403 SAMTools SNP 445371 445371 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1403 SAMTools SNP 445389 445389 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold1403 SAMTools SNP 457073 457073 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C129:99 scaffold1403 SAMTools SNP 457693 457693 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C24%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.63%2C0.19%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1403 SAMTools SNP 457711 457711 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C2%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1403 SAMTools SNP 457735 457735 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C2%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.62%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1403 SAMTools SNP 457750 457750 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C26%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.5%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C38:41 scaffold1403 SAMTools SNP 458815 458815 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1403 SAMTools SNP 458916 458916 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00043%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1403 SAMTools SNP 460884 460884 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1403 SAMTools SNP 461533 461533 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 461779 461779 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1403 SAMTools SNP 462456 462456 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D12%3BFQ%3D-33%3BPV4%3D1%2C0.091%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1403 SAMTools SNP 463616 463616 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1403 SAMTools SNP 463677 463677 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D48%3BFQ%3D100%3BPV4%3D1%2C0.19%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C127:99 scaffold1403 SAMTools SNP 464791 464791 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold1403 SAMTools SNP 464808 464808 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.061%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1403 SAMTools SNP 464811 464811 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold1403 SAMTools SNP 465542 465542 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.029%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C135:99 scaffold1403 SAMTools SNP 465548 465548 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1403 SAMTools SNP 465561 465561 28.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C30%2C24%2C59%2C0%2C56:10 scaffold1403 SAMTools SNP 465594 465594 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1403 SAMTools SNP 465625 465625 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1403 SAMTools SNP 465931 465931 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1403 SAMTools SNP 465952 465952 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1403 SAMTools SNP 465979 465979 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1403 SAMTools SNP 466467 466467 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1403 SAMTools SNP 466473 466473 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.27%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1403 SAMTools SNP 466482 466482 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold1403 SAMTools SNP 466982 466982 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 467448 467448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1403 SAMTools SNP 468115 468115 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1403 SAMTools SNP 468118 468118 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.58%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1403 SAMTools SNP 468136 468136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C16%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold1403 SAMTools SNP 468910 468910 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 469838 469838 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 472665 472665 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1403 SAMTools SNP 478785 478785 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C254:81 scaffold1403 SAMTools SNP 498394 498394 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold1403 SAMTools SNP 498929 498929 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1403 SAMTools SNP 501196 501196 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1403 SAMTools SNP 501222 501222 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1403 SAMTools SNP 524680 524680 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1403 SAMTools SNP 528174 528174 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1403 SAMTools SNP 530698 530698 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1403 SAMTools SNP 530758 530758 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1403 SAMTools SNP 533537 533537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C5e-09%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1403 SAMTools SNP 533545 533545 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.39%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1403 SAMTools SNP 534105 534105 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C6.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C137:84 scaffold1403 SAMTools SNP 534851 534851 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0041%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1403 SAMTools SNP 534854 534854 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0041%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1403 SAMTools SNP 535826 535826 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1403 SAMTools SNP 538860 538860 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C93%2C0:99 scaffold1403 SAMTools SNP 539299 539299 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1403 SAMTools SNP 540518 540518 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold1403 SAMTools SNP 545857 545857 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1403 SAMTools SNP 610230 610230 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1403 SAMTools SNP 615620 615620 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 8193 8193 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1404 SAMTools SNP 8232 8232 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1404 SAMTools SNP 8235 8235 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1404 SAMTools SNP 8419 8419 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.39%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C223:99 scaffold1404 SAMTools SNP 8470 8470 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.52%2C7.3e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1404 SAMTools SNP 8509 8509 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1404 SAMTools SNP 10770 10770 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1404 SAMTools SNP 12987 12987 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C123:99 scaffold1404 SAMTools SNP 13155 13155 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C39%2C0:75 scaffold1404 SAMTools SNP 17486 17486 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1404 SAMTools SNP 29258 29258 61.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold1404 SAMTools SNP 38297 38297 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold1404 SAMTools SNP 41976 41976 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C51%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.46%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 50680 50680 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1404 SAMTools SNP 52154 52154 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1404 SAMTools SNP 52881 52881 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C132%2C0:99 scaffold1404 SAMTools SNP 52932 52932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1404 SAMTools SNP 52947 52947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C95%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.47%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1404 SAMTools SNP 54235 54235 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1404 SAMTools SNP 55941 55941 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1404 SAMTools SNP 60862 60862 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C59%2C29%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C4.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 61789 61789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C84%2C5%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 66085 66085 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1404 SAMTools SNP 68994 68994 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.001%2C5.2e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1404 SAMTools SNP 86385 86385 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 86407 86407 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1404 SAMTools SNP 86417 86417 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold1404 SAMTools SNP 88156 88156 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C248:99 scaffold1404 SAMTools SNP 88428 88428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1404 SAMTools SNP 88500 88500 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 89611 89611 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold1404 SAMTools SNP 89663 89663 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1404 SAMTools SNP 91152 91152 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.21%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 91161 91161 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.023%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 92314 92314 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C3%2C31%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.11%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1404 SAMTools SNP 92404 92404 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1404 SAMTools SNP 92573 92573 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1404 SAMTools SNP 94012 94012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 94127 94127 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.24%2C6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C200:99 scaffold1404 SAMTools SNP 94137 94137 99.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1404 SAMTools SNP 94146 94146 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C213:79 scaffold1404 SAMTools SNP 94866 94866 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1404 SAMTools SNP 94867 94867 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1404 SAMTools SNP 95131 95131 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.095%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 95238 95238 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C17%2C20%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.83%2C1.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1404 SAMTools SNP 96028 96028 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.051%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C208:34 scaffold1404 SAMTools SNP 96043 96043 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.49%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1404 SAMTools SNP 96052 96052 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1404 SAMTools SNP 96670 96670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1404 SAMTools SNP 96715 96715 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C53%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 96893 96893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1404 SAMTools SNP 97043 97043 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C33%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 97646 97646 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C9%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1404 SAMTools SNP 97658 97658 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.064%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1404 SAMTools SNP 97708 97708 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.7%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1404 SAMTools SNP 102502 102502 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C6e-08%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C238:99 scaffold1404 SAMTools SNP 102507 102507 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.0072%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C243:99 scaffold1404 SAMTools SNP 102816 102816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C21%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.068%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1404 SAMTools SNP 103578 103578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1404 SAMTools SNP 103624 103624 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D5.49%3BPV4%3D0.33%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1404 SAMTools SNP 106273 106273 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1404 SAMTools SNP 106288 106288 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1404 SAMTools SNP 106438 106438 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 106450 106450 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1404 SAMTools SNP 106968 106968 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C174:72 scaffold1404 SAMTools SNP 107168 107168 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1404 SAMTools SNP 110623 110623 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C0%3BMQ%3D43%3BFQ%3D118%3BPV4%3D0.3%2C1.1e-17%2C0.05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C178:99 scaffold1404 SAMTools SNP 111621 111621 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1404 SAMTools SNP 111665 111665 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1404 SAMTools SNP 114919 114919 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1404 SAMTools SNP 118152 118152 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1404 SAMTools SNP 118573 118573 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0354%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C127:28 scaffold1404 SAMTools SNP 118774 118774 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C102%2C0:99 scaffold1404 SAMTools SNP 119726 119726 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1404 SAMTools SNP 119728 119728 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1404 SAMTools SNP 119865 119865 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1404 SAMTools SNP 120537 120537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1404 SAMTools SNP 120608 120608 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1404 SAMTools SNP 120653 120653 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C11%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C151%2C0:99 scaffold1404 SAMTools SNP 120894 120894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1404 SAMTools SNP 121745 121745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1404 SAMTools SNP 122343 122343 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1404 SAMTools SNP 123424 123424 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1404 SAMTools SNP 123722 123722 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 123723 123723 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 130304 130304 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C17%2C0%3BMQ%3D49%3BFQ%3D25%3BPV4%3D8.1e-05%2C8.4e-15%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1404 SAMTools SNP 134859 134859 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1404 SAMTools SNP 135124 135124 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1404 SAMTools SNP 136262 136262 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1404 SAMTools SNP 136684 136684 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1404 SAMTools SNP 137674 137674 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C247:99 scaffold1404 SAMTools SNP 137783 137783 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C17%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C249:39 scaffold1404 SAMTools SNP 141585 141585 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.3e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1404 SAMTools SNP 144139 144139 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.0076%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1404 SAMTools SNP 144212 144212 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1404 SAMTools SNP 144223 144223 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1404 SAMTools SNP 147521 147521 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1404 SAMTools SNP 160598 160598 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1404 SAMTools SNP 167176 167176 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.23%2C0.0054%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1404 SAMTools SNP 168475 168475 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1404 SAMTools SNP 174240 174240 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C255%2C0:99 scaffold1404 SAMTools SNP 175398 175398 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1404 SAMTools SNP 175448 175448 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1404 SAMTools SNP 175528 175528 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1404 SAMTools SNP 176044 176044 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C93%2C0:99 scaffold1404 SAMTools SNP 176405 176405 29.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1404 SAMTools SNP 176472 176472 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C75%2C0:99 scaffold1404 SAMTools SNP 176617 176617 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C46%2C4%2C27%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.12%2C0.011%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1404 SAMTools SNP 176626 176626 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C71%2C1%2C26%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0082%2C0.0001%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1404 SAMTools SNP 179109 179109 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C38:41 scaffold1404 SAMTools SNP 179129 179129 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1404 SAMTools SNP 179716 179716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C43:46 scaffold1404 SAMTools SNP 179768 179768 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1404 SAMTools SNP 181811 181811 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1404 SAMTools SNP 183320 183320 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1404 SAMTools SNP 185613 185613 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C123%2C0:99 scaffold1404 SAMTools SNP 187748 187748 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.038%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1404 SAMTools SNP 187831 187831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1404 SAMTools SNP 187950 187950 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 187976 187976 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1404 SAMTools SNP 188057 188057 38.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C19%2C1%2C62%2C0%2C59:33 scaffold1404 SAMTools SNP 188408 188408 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C20%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.42%2C3.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1404 SAMTools SNP 189924 189924 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C58%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D0.29%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold1404 SAMTools SNP 190103 190103 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1404 SAMTools SNP 194050 194050 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C10%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C240:99 scaffold1404 SAMTools SNP 219033 219033 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1409 SAMTools SNP 715 715 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 1468 1468 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1409 SAMTools SNP 1535 1535 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1409 SAMTools SNP 2117 2117 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold1409 SAMTools SNP 2120 2120 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold1409 SAMTools SNP 2347 2347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1409 SAMTools SNP 2452 2452 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold1409 SAMTools SNP 5513 5513 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 5528 5528 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 7491 7491 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C12%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.75%2C7.9e-21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1409 SAMTools SNP 7578 7578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C27%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1409 SAMTools SNP 8326 8326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1409 SAMTools SNP 8383 8383 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1409 SAMTools SNP 8596 8596 39.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1409 SAMTools SNP 8927 8927 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.38%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1409 SAMTools SNP 8993 8993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1409 SAMTools SNP 9544 9544 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C7%2C64%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.02%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 9552 9552 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C11%2C122%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 9568 9568 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C10%2C36%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 9598 9598 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C0%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.57%2C4.3e-10%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1409 SAMTools SNP 9983 9983 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1409 SAMTools SNP 10002 10002 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C65%2C0%2C46%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1409 SAMTools SNP 10533 10533 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1409 SAMTools SNP 10603 10603 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 11844 11844 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C2.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1409 SAMTools SNP 18790 18790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1409 SAMTools SNP 18797 18797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 19335 19335 20.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold1409 SAMTools SNP 20799 20799 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 20961 20961 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1409 SAMTools SNP 21093 21093 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 21518 21518 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1409 SAMTools SNP 21742 21742 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1409 SAMTools SNP 21766 21766 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 23490 23490 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1409 SAMTools SNP 23499 23499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1409 SAMTools SNP 24491 24491 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold1409 SAMTools SNP 24513 24513 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1409 SAMTools SNP 24897 24897 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1409 SAMTools SNP 25883 25883 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1409 SAMTools SNP 26008 26008 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1409 SAMTools SNP 26903 26903 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 28028 28028 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1409 SAMTools SNP 28064 28064 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold1409 SAMTools SNP 28067 28067 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D0.47%2C0.006%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C127:77 scaffold1409 SAMTools SNP 28316 28316 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.32%2C0.14%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C127:41 scaffold1409 SAMTools SNP 28406 28406 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1409 SAMTools SNP 28798 28798 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C203:54 scaffold1409 SAMTools SNP 28944 28944 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1409 SAMTools SNP 29580 29580 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1409 SAMTools SNP 29607 29607 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1409 SAMTools SNP 30229 30229 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 30247 30247 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 31006 31006 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 31007 31007 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 31021 31021 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 31375 31375 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 31423 31423 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 31505 31505 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 32174 32174 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 32274 32274 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1409 SAMTools SNP 32786 32786 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.47%2C0.4%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1409 SAMTools SNP 32809 32809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1409 SAMTools SNP 34089 34089 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 34395 34395 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 37348 37348 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 53972 53972 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1409 SAMTools SNP 54200 54200 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 54570 54570 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 54648 54648 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 54953 54953 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1409 SAMTools SNP 55055 55055 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 55059 55059 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1409 SAMTools SNP 55118 55118 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 55393 55393 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 55426 55426 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 55444 55444 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 56146 56146 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 56151 56151 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 56475 56475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 56486 56486 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 56591 56591 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1409 SAMTools SNP 56967 56967 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1409 SAMTools SNP 57443 57443 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 58175 58175 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 58213 58213 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1409 SAMTools SNP 58572 58572 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold1409 SAMTools SNP 58627 58627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1409 SAMTools SNP 58638 58638 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1409 SAMTools SNP 58816 58816 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.54%2C0.087%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1409 SAMTools SNP 58822 58822 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.31%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold1409 SAMTools SNP 59148 59148 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C2%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1409 SAMTools SNP 59181 59181 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.65%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1409 SAMTools SNP 59388 59388 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.61%2C0.13%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1409 SAMTools SNP 59426 59426 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1409 SAMTools SNP 61050 61050 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.009%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1409 SAMTools SNP 61063 61063 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.37%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1409 SAMTools SNP 61084 61084 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C143:99 scaffold1409 SAMTools SNP 61392 61392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 61812 61812 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.56%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1409 SAMTools SNP 62042 62042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1409 SAMTools SNP 62060 62060 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1409 SAMTools SNP 63672 63672 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.1%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1409 SAMTools SNP 63708 63708 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold1409 SAMTools SNP 64364 64364 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1409 SAMTools SNP 64408 64408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1409 SAMTools SNP 64729 64729 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1409 SAMTools SNP 65631 65631 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C43:46 scaffold1409 SAMTools SNP 66119 66119 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1409 SAMTools SNP 68522 68522 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 68719 68719 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold1409 SAMTools SNP 73568 73568 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C88:63 scaffold1409 SAMTools SNP 73588 73588 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1409 SAMTools SNP 73610 73610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.28%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1409 SAMTools SNP 74165 74165 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C174:99 scaffold1409 SAMTools SNP 74219 74219 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.094%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C154:99 scaffold1409 SAMTools SNP 74237 74237 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C2.1e-05%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C121:55 scaffold1409 SAMTools SNP 74261 74261 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0062%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1409 SAMTools SNP 74282 74282 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1409 SAMTools SNP 74308 74308 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold1409 SAMTools SNP 74721 74721 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1409 SAMTools SNP 74748 74748 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1409 SAMTools SNP 74822 74822 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1409 SAMTools SNP 75516 75516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 75528 75528 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 75752 75752 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1409 SAMTools SNP 75818 75818 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C127:57 scaffold1409 SAMTools SNP 75854 75854 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1409 SAMTools SNP 76729 76729 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1409 SAMTools SNP 76768 76768 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1409 SAMTools SNP 76795 76795 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1409 SAMTools SNP 76961 76961 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1409 SAMTools SNP 78095 78095 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1409 SAMTools SNP 79077 79077 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1409 SAMTools SNP 79098 79098 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1409 SAMTools SNP 79675 79675 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1409 SAMTools SNP 79696 79696 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1409 SAMTools SNP 79717 79717 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1409 SAMTools SNP 79750 79750 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1409 SAMTools SNP 79756 79756 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C212:99 scaffold1409 SAMTools SNP 79969 79969 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1409 SAMTools SNP 79971 79971 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.49%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1409 SAMTools SNP 80005 80005 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1409 SAMTools SNP 80674 80674 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C1%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 80745 80745 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C0.026%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C24:27 scaffold1409 SAMTools SNP 82016 82016 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C0%2C10%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.18%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1409 SAMTools SNP 82088 82088 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1409 SAMTools SNP 82100 82100 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 82641 82641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1409 SAMTools SNP 83135 83135 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C28%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.023%2C0.22%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1409 SAMTools SNP 83425 83425 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 83477 83477 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C48%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C110:99 scaffold1409 SAMTools SNP 85561 85561 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.45%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1409 SAMTools SNP 85563 85563 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold1409 SAMTools SNP 86462 86462 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C17%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.036%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1409 SAMTools SNP 86780 86780 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1409 SAMTools SNP 86810 86810 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C4%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.69%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1409 SAMTools SNP 87506 87506 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C12%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.012%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1409 SAMTools SNP 87559 87559 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.015%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1409 SAMTools SNP 87588 87588 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1409 SAMTools SNP 87748 87748 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C220:99 scaffold1409 SAMTools SNP 95453 95453 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 102710 102710 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 131115 131115 56.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold1409 SAMTools SNP 207962 207962 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 208802 208802 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 208819 208819 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 216257 216257 77.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C15%2C0:27 scaffold1409 SAMTools SNP 227697 227697 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 227712 227712 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1409 SAMTools SNP 228773 228773 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 228788 228788 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1409 SAMTools SNP 229384 229384 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1409 SAMTools SNP 230083 230083 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.083%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C107:99 scaffold1409 SAMTools SNP 230107 230107 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C70:73 scaffold1409 SAMTools SNP 230585 230585 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1409 SAMTools SNP 231479 231479 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1409 SAMTools SNP 231513 231513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1409 SAMTools SNP 231569 231569 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1409 SAMTools SNP 232001 232001 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1409 SAMTools SNP 232039 232039 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1409 SAMTools SNP 232040 232040 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1409 SAMTools SNP 232125 232125 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1409 SAMTools SNP 232800 232800 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1409 SAMTools SNP 232834 232834 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1409 SAMTools SNP 233121 233121 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.32%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1409 SAMTools SNP 233127 233127 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1409 SAMTools SNP 233239 233239 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 233247 233247 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 233889 233889 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1409 SAMTools SNP 233928 233928 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1409 SAMTools SNP 233931 233931 88 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C21%2C117%2C0%2C114:16 scaffold1409 SAMTools SNP 234315 234315 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1409 SAMTools SNP 234808 234808 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 234855 234855 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 235253 235253 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 235436 235436 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1409 SAMTools SNP 235490 235490 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C181:99 scaffold1409 SAMTools SNP 236137 236137 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D3.7e-05%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1409 SAMTools SNP 240507 240507 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C12%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0012%2C0.044%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1409 SAMTools SNP 240546 240546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1409 SAMTools SNP 241125 241125 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.16%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1409 SAMTools SNP 241152 241152 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1409 SAMTools SNP 241599 241599 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 241742 241742 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.43%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C126:64 scaffold1409 SAMTools SNP 241755 241755 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.4%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C127:58 scaffold1409 SAMTools SNP 241780 241780 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold1409 SAMTools SNP 242101 242101 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1409 SAMTools SNP 243196 243196 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C116:77 scaffold1409 SAMTools SNP 243208 243208 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C156:88 scaffold1409 SAMTools SNP 243260 243260 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1409 SAMTools SNP 243263 243263 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 243318 243318 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1409 SAMTools SNP 243927 243927 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C161:34 scaffold1409 SAMTools SNP 243931 243931 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1409 SAMTools SNP 243943 243943 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1409 SAMTools SNP 243946 243946 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 243969 243969 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1409 SAMTools SNP 244206 244206 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1409 SAMTools SNP 244210 244210 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1409 SAMTools SNP 244256 244256 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1409 SAMTools SNP 244262 244262 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1409 SAMTools SNP 244517 244517 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 244520 244520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 244547 244547 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1409 SAMTools SNP 244580 244580 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1409 SAMTools SNP 244841 244841 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1409 SAMTools SNP 244842 244842 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C115:99 scaffold1409 SAMTools SNP 245015 245015 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1409 SAMTools SNP 245016 245016 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1409 SAMTools SNP 245120 245120 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C0.44%2C1%2C8.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1409 SAMTools SNP 245647 245647 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.062%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1409 SAMTools SNP 246180 246180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1409 SAMTools SNP 246225 246225 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1409 SAMTools SNP 246327 246327 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C235:69 scaffold1409 SAMTools SNP 247148 247148 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1409 SAMTools SNP 247673 247673 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1409 SAMTools SNP 247793 247793 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1409 SAMTools SNP 247804 247804 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 248238 248238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1409 SAMTools SNP 249216 249216 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C134:99 scaffold1409 SAMTools SNP 249448 249448 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1409 SAMTools SNP 249869 249869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1409 SAMTools SNP 250352 250352 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.57%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1409 SAMTools SNP 250379 250379 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-72%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1409 SAMTools SNP 250403 250403 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1409 SAMTools SNP 250457 250457 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.3%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1409 SAMTools SNP 250466 250466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C34%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1409 SAMTools SNP 250800 250800 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C0.024%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1409 SAMTools SNP 251138 251138 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1409 SAMTools SNP 251209 251209 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.00011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C147:84 scaffold1409 SAMTools SNP 251242 251242 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1409 SAMTools SNP 252012 252012 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 253845 253845 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1409 SAMTools SNP 255041 255041 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 255456 255456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C3%3BMQ%3D48%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1409 SAMTools SNP 256043 256043 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1409 SAMTools SNP 257739 257739 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C1%3BMQ%3D48%3BFQ%3D121%3BPV4%3D0.24%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C218:99 scaffold1409 SAMTools SNP 258273 258273 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C5%3BMQ%3D48%3BFQ%3D87%3BPV4%3D0.58%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C114:99 scaffold1409 SAMTools SNP 260185 260185 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold1409 SAMTools SNP 260512 260512 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 261095 261095 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1409 SAMTools SNP 261475 261475 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1409 SAMTools SNP 261529 261529 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 261556 261556 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 263365 263365 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1409 SAMTools SNP 263423 263423 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1409 SAMTools SNP 264027 264027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 264286 264286 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C6%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.098%2C0.076%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1409 SAMTools SNP 264421 264421 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 264460 264460 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1409 SAMTools SNP 265227 265227 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold1409 SAMTools SNP 270694 270694 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.29%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1409 SAMTools SNP 273480 273480 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C11%2C8%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.36%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1409 SAMTools SNP 274753 274753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1409 SAMTools SNP 274781 274781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1409 SAMTools SNP 274847 274847 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C190:99 scaffold1409 SAMTools SNP 274859 274859 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C3%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.034%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1409 SAMTools SNP 275322 275322 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1409 SAMTools SNP 275325 275325 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1409 SAMTools SNP 275385 275385 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C18%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.22%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1409 SAMTools SNP 275635 275635 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.015%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1409 SAMTools SNP 275668 275668 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1409 SAMTools SNP 275671 275671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1409 SAMTools SNP 276285 276285 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C32%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.028%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1409 SAMTools SNP 276340 276340 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C15%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.088%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1409 SAMTools SNP 277084 277084 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.038%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C97:48 scaffold1409 SAMTools SNP 277138 277138 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 277147 277147 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1409 SAMTools SNP 277665 277665 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1409 SAMTools SNP 277719 277719 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1409 SAMTools SNP 277800 277800 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C27%2C0:51 scaffold1409 SAMTools SNP 277847 277847 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1409 SAMTools SNP 278270 278270 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1409 SAMTools SNP 278599 278599 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.37%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1409 SAMTools SNP 278638 278638 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 278648 278648 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 279296 279296 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1409 SAMTools SNP 279322 279322 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold1409 SAMTools SNP 279361 279361 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold1409 SAMTools SNP 279753 279753 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1409 SAMTools SNP 279782 279782 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1409 SAMTools SNP 279810 279810 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1409 SAMTools SNP 279834 279834 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 279846 279846 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1409 SAMTools SNP 280757 280757 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1409 SAMTools SNP 280830 280830 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1409 SAMTools SNP 280902 280902 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1409 SAMTools SNP 280917 280917 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C238:99 scaffold1409 SAMTools SNP 281731 281731 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.02%2C0.26%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1409 SAMTools SNP 281749 281749 154 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C30%2C15%2C180%2C0%2C176:27 scaffold1409 SAMTools SNP 281788 281788 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1409 SAMTools SNP 298829 298829 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 299319 299319 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold1409 SAMTools SNP 299334 299334 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1409 SAMTools SNP 303944 303944 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1409 SAMTools SNP 303960 303960 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1409 SAMTools SNP 304314 304314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1409 SAMTools SNP 304386 304386 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1409 SAMTools SNP 304978 304978 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C9%2C0:16 scaffold1409 SAMTools SNP 305574 305574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1409 SAMTools SNP 305601 305601 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C4.1e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1409 SAMTools SNP 305635 305635 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1409 SAMTools SNP 305703 305703 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C0%2C11%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0014%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1409 SAMTools SNP 306533 306533 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C245:99 scaffold1409 SAMTools SNP 306551 306551 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C245:99 scaffold1409 SAMTools SNP 307046 307046 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1409 SAMTools SNP 307094 307094 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1409 SAMTools SNP 307369 307369 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1409 SAMTools SNP 307875 307875 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1409 SAMTools SNP 310557 310557 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1409 SAMTools SNP 311253 311253 43.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1409 SAMTools SNP 320624 320624 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C57%2C0:99 scaffold1409 SAMTools SNP 321061 321061 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1409 SAMTools SNP 321279 321279 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1.2e-14%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1409 SAMTools SNP 321367 321367 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C22%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C9.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C216:83 scaffold1409 SAMTools SNP 321414 321414 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1409 SAMTools SNP 322806 322806 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 322831 322831 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 323063 323063 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 324556 324556 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1409 SAMTools SNP 324781 324781 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1409 SAMTools SNP 325058 325058 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 325531 325531 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1409 SAMTools SNP 329003 329003 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 329005 329005 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 334595 334595 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C41:43 scaffold1409 SAMTools SNP 348647 348647 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C4.7e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C122:99 scaffold1409 SAMTools SNP 348656 348656 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0103%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D34%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.035%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C215:30 scaffold1409 SAMTools SNP 350584 350584 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1409 SAMTools SNP 351855 351855 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold1409 SAMTools SNP 354453 354453 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C12:15 scaffold1409 SAMTools SNP 355569 355569 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 356166 356166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1409 SAMTools SNP 358413 358413 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1409 SAMTools SNP 359733 359733 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D42%3BFQ%3D80%3BPV4%3D0.2%2C0.062%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C107:99 scaffold1409 SAMTools SNP 362798 362798 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1409 SAMTools SNP 363087 363087 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold1409 SAMTools SNP 363101 363101 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C17%2C0%3BMQ%3D48%3BFQ%3D68%3BPV4%3D1%2C5.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C178:98 scaffold1409 SAMTools SNP 365019 365019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 365278 365278 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C11%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.023%2C0.0015%2C0.088%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1409 SAMTools SNP 365437 365437 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C3%2C10%3BMQ%3D44%3BFQ%3D55%3BPV4%3D1%2C0.026%2C0.0051%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1409 SAMTools SNP 365443 365443 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C10%3BMQ%3D44%3BFQ%3D66%3BPV4%3D0.18%2C0.00011%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C233:96 scaffold1409 SAMTools SNP 366386 366386 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1409 SAMTools SNP 366780 366780 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1409 SAMTools SNP 366812 366812 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1409 SAMTools SNP 367211 367211 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1409 SAMTools SNP 367499 367499 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1409 SAMTools SNP 367697 367697 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1409 SAMTools SNP 368224 368224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.38%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 1296 1296 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold141 SAMTools SNP 3284 3284 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold141 SAMTools SNP 3296 3296 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold141 SAMTools SNP 3602 3602 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 12665 12665 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C288%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold141 SAMTools SNP 12716 12716 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C157%2C54%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 13505 13505 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C105%2C2%2C82%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 13934 13934 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D35%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C40:43 scaffold141 SAMTools SNP 17713 17713 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold141 SAMTools SNP 17750 17750 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold141 SAMTools SNP 17761 17761 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold141 SAMTools SNP 23196 23196 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C11%2C45%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0065%2C4.3e-76%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C223:99 scaffold141 SAMTools SNP 23697 23697 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold141 SAMTools SNP 24954 24954 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold141 SAMTools SNP 24998 24998 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold141 SAMTools SNP 26178 26178 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold141 SAMTools SNP 26562 26562 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold141 SAMTools SNP 29741 29741 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C8.2e-09%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C136:91 scaffold141 SAMTools SNP 30311 30311 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold141 SAMTools SNP 30356 30356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D22%2C3%2C129%2C99%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D0.0022%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold141 SAMTools SNP 30902 30902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D873%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C457%2C393%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C7.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold141 SAMTools SNP 31844 31844 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold141 SAMTools SNP 46206 46206 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold141 SAMTools SNP 46269 46269 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold141 SAMTools SNP 46317 46317 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold141 SAMTools SNP 48504 48504 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.3%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 49285 49285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.3%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 49338 49338 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold141 SAMTools SNP 49347 49347 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.48%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold141 SAMTools SNP 49670 49670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold141 SAMTools SNP 49694 49694 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold141 SAMTools SNP 53028 53028 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C21%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.024%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold141 SAMTools SNP 53055 53055 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C22%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold141 SAMTools SNP 53064 53064 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.00034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold141 SAMTools SNP 53574 53574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold141 SAMTools SNP 53636 53636 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 53834 53834 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.54%2C0.26%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold141 SAMTools SNP 54272 54272 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold141 SAMTools SNP 54876 54876 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C19%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.68%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold141 SAMTools SNP 54891 54891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C59%2C7%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.67%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold141 SAMTools SNP 55820 55820 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 56861 56861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C13%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00088%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold141 SAMTools SNP 57848 57848 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.077%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold141 SAMTools SNP 57853 57853 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.44%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold141 SAMTools SNP 57877 57877 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold141 SAMTools SNP 58240 58240 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold141 SAMTools SNP 58443 58443 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold141 SAMTools SNP 58479 58479 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold141 SAMTools SNP 59411 59411 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C6%2C0%3BMQ%3D47%3BFQ%3D31%3BPV4%3D1%2C0.00035%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold141 SAMTools SNP 59445 59445 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C8%3BMQ%3D47%3BFQ%3D149%3BPV4%3D0.25%2C0.048%2C0.13%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C176:99 scaffold141 SAMTools SNP 59469 59469 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C11%3BMQ%3D46%3BFQ%3D185%3BPV4%3D0.62%2C0.091%2C0.066%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold141 SAMTools SNP 59616 59616 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C6%3BMQ%3D47%3BFQ%3D186%3BPV4%3D0.58%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold141 SAMTools SNP 59637 59637 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C4%2C2%3BMQ%3D47%3BFQ%3D130%3BPV4%3D0.18%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold141 SAMTools SNP 60055 60055 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold141 SAMTools SNP 60521 60521 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.055%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold141 SAMTools SNP 60564 60564 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold141 SAMTools SNP 60975 60975 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold141 SAMTools SNP 71260 71260 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 71269 71269 17.1 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C26%2C23%2C47%2C0%2C44:6 scaffold141 SAMTools SNP 71311 71311 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold141 SAMTools SNP 71359 71359 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold141 SAMTools SNP 71536 71536 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 71552 71552 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold141 SAMTools SNP 71555 71555 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C27:31 scaffold141 SAMTools SNP 71775 71775 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold141 SAMTools SNP 78104 78104 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 78112 78112 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 79086 79086 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 79523 79523 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 79562 79562 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 85881 85881 33.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold141 SAMTools SNP 92074 92074 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C50%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C151%2C0:99 scaffold141 SAMTools SNP 109093 109093 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold141 SAMTools SNP 109132 109132 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 1675 1675 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C5.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1411 SAMTools SNP 1715 1715 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1411 SAMTools SNP 1717 1717 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1411 SAMTools SNP 3493 3493 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.026%2C0.0022%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1411 SAMTools SNP 3494 3494 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0081%2C0.00028%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1411 SAMTools SNP 12244 12244 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 23135 23135 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1411 SAMTools SNP 23169 23169 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1411 SAMTools SNP 23457 23457 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold1411 SAMTools SNP 25022 25022 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1411 SAMTools SNP 25086 25086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 25102 25102 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1411 SAMTools SNP 25257 25257 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1411 SAMTools SNP 25734 25734 21.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1411 SAMTools SNP 25783 25783 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1411 SAMTools SNP 25801 25801 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1411 SAMTools SNP 26728 26728 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1411 SAMTools SNP 26956 26956 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1411 SAMTools SNP 26971 26971 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1411 SAMTools SNP 26989 26989 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1411 SAMTools SNP 26997 26997 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold1411 SAMTools SNP 27408 27408 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C222:99 scaffold1411 SAMTools SNP 27453 27453 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 27790 27790 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1411 SAMTools SNP 27796 27796 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1411 SAMTools SNP 38027 38027 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1411 SAMTools SNP 53860 53860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C71%2C89%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-11%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1411 SAMTools SNP 53980 53980 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1411 SAMTools SNP 56195 56195 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1411 SAMTools SNP 57892 57892 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold1411 SAMTools SNP 62636 62636 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C10%2C0%3BMQ%3D47%3BFQ%3D67%3BPV4%3D1%2C0.25%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C219:97 scaffold1411 SAMTools SNP 65881 65881 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C238:34 scaffold1411 SAMTools SNP 69494 69494 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 104947 104947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C3%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1411 SAMTools SNP 106994 106994 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1411 SAMTools SNP 107048 107048 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C1%2C19%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.31%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C217:99 scaffold1411 SAMTools SNP 107736 107736 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1411 SAMTools SNP 137960 137960 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1411 SAMTools SNP 154960 154960 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C201:99 scaffold1411 SAMTools SNP 155283 155283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C13%2C85%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.033%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1411 SAMTools SNP 155301 155301 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C82%2C47%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D4.5e-15%2C6.1e-46%2C1%2C2.7e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1411 SAMTools SNP 155324 155324 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C63%2C44%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1411 SAMTools SNP 156507 156507 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1411 SAMTools SNP 156520 156520 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 157899 157899 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold1411 SAMTools SNP 158205 158205 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1411 SAMTools SNP 158244 158244 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C154:99 scaffold1411 SAMTools SNP 158274 158274 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1411 SAMTools SNP 178287 178287 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 191774 191774 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1411 SAMTools SNP 196178 196178 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1411 SAMTools SNP 202181 202181 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1411 SAMTools SNP 202188 202188 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1411 SAMTools SNP 202280 202280 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1411 SAMTools SNP 206119 206119 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1411 SAMTools SNP 206151 206151 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1411 SAMTools SNP 206446 206446 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1417 SAMTools SNP 13259 13259 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1417 SAMTools SNP 13361 13361 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1417 SAMTools SNP 43774 43774 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1417 SAMTools SNP 56885 56885 77 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C33%2C0%2C101%2C13%2C98:63 scaffold1417 SAMTools SNP 56898 56898 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1417 SAMTools SNP 60747 60747 157 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C47%2C29%2C180%2C0%2C177:33 scaffold1417 SAMTools SNP 60755 60755 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1417 SAMTools SNP 60791 60791 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C71:74 scaffold1417 SAMTools SNP 60952 60952 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C208:61 scaffold1417 SAMTools SNP 60969 60969 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C81:84 scaffold1417 SAMTools SNP 60974 60974 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C158:99 scaffold1417 SAMTools SNP 61000 61000 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold1417 SAMTools SNP 61081 61081 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.3%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C113:99 scaffold1417 SAMTools SNP 77210 77210 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1417 SAMTools SNP 79450 79450 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1417 SAMTools SNP 116001 116001 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D47%3BFQ%3D37%3BPV4%3D1%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C177:67 scaffold1417 SAMTools SNP 116239 116239 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1419 SAMTools SNP 17181 17181 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 17182 17182 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 17256 17256 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C244:63 scaffold1419 SAMTools SNP 17262 17262 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1419 SAMTools SNP 17406 17406 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.26%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1419 SAMTools SNP 17427 17427 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C13%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1419 SAMTools SNP 17431 17431 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C9%2C11%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0078%2C2.4e-29%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1419 SAMTools SNP 17442 17442 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.026%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C236:99 scaffold1419 SAMTools SNP 17743 17743 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C45%2C0%2C28%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0075%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1419 SAMTools SNP 17758 17758 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 17931 17931 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C19%3BMQ%3D49%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C35:38 scaffold1419 SAMTools SNP 18105 18105 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 18335 18335 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1419 SAMTools SNP 18336 18336 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1419 SAMTools SNP 18437 18437 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold1419 SAMTools SNP 18480 18480 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C179:99 scaffold1419 SAMTools SNP 19070 19070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1419 SAMTools SNP 19316 19316 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 20196 20196 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C82%2C1%2C14%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.14%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1419 SAMTools SNP 20583 20583 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 20630 20630 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.038%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1419 SAMTools SNP 21547 21547 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1419 SAMTools SNP 21593 21593 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 21687 21687 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 23295 23295 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1419 SAMTools SNP 23370 23370 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1419 SAMTools SNP 24284 24284 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1419 SAMTools SNP 24313 24313 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1419 SAMTools SNP 24331 24331 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1419 SAMTools SNP 24493 24493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 24526 24526 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C237:99 scaffold1419 SAMTools SNP 24528 24528 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1419 SAMTools SNP 24756 24756 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C5%2C19%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1419 SAMTools SNP 24822 24822 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C17%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0023%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 24831 24831 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C81%2C1%2C17%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.12%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1419 SAMTools SNP 24849 24849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1419 SAMTools SNP 25189 25189 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C3%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C9.4e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1419 SAMTools SNP 25373 25373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1419 SAMTools SNP 26058 26058 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C0%2C25%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1419 SAMTools SNP 26088 26088 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C0%2C20%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1419 SAMTools SNP 26138 26138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1419 SAMTools SNP 28349 28349 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1419 SAMTools SNP 30688 30688 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C38%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C0.29%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold1419 SAMTools SNP 30713 30713 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C36%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold1419 SAMTools SNP 30773 30773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1419 SAMTools SNP 30817 30817 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1419 SAMTools SNP 30860 30860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1419 SAMTools SNP 31217 31217 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1419 SAMTools SNP 31259 31259 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1419 SAMTools SNP 31548 31548 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1419 SAMTools SNP 31572 31572 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 31578 31578 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 32161 32161 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1419 SAMTools SNP 32842 32842 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 32863 32863 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1419 SAMTools SNP 33125 33125 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.082%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1419 SAMTools SNP 33269 33269 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1419 SAMTools SNP 33958 33958 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1419 SAMTools SNP 33972 33972 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1419 SAMTools SNP 34168 34168 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C30%2C0:57 scaffold1419 SAMTools SNP 34215 34215 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1419 SAMTools SNP 34260 34260 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1419 SAMTools SNP 34868 34868 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C39%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C8e-61%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1419 SAMTools SNP 36492 36492 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1419 SAMTools SNP 36495 36495 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C0.26%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1419 SAMTools SNP 36635 36635 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1419 SAMTools SNP 36647 36647 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1419 SAMTools SNP 38259 38259 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C12%2C8%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1419 SAMTools SNP 38558 38558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1419 SAMTools SNP 38609 38609 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.25%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C177:36 scaffold1419 SAMTools SNP 40257 40257 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1419 SAMTools SNP 40327 40327 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.56%2C0.38%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C245:99 scaffold1419 SAMTools SNP 40657 40657 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 40659 40659 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 40672 40672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 40723 40723 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C177:99 scaffold1419 SAMTools SNP 40744 40744 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1419 SAMTools SNP 41380 41380 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C135:55 scaffold1419 SAMTools SNP 42494 42494 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1419 SAMTools SNP 42580 42580 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1419 SAMTools SNP 42768 42768 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold1419 SAMTools SNP 43389 43389 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1419 SAMTools SNP 43401 43401 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.46%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C186:99 scaffold1419 SAMTools SNP 43542 43542 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1419 SAMTools SNP 43793 43793 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D0.067%2C1%2C0.16%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C76:42 scaffold1419 SAMTools SNP 44173 44173 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1419 SAMTools SNP 44194 44194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1419 SAMTools SNP 44236 44236 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 44278 44278 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C33%2C0:63 scaffold1419 SAMTools SNP 44608 44608 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 44934 44934 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.036%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1419 SAMTools SNP 44961 44961 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.00033%2C0.4%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C166:99 scaffold1419 SAMTools SNP 44971 44971 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1419 SAMTools SNP 45356 45356 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C1%3BMQ%3D46%3BFQ%3D34%3BPV4%3D0.47%2C1%2C0.00023%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1419 SAMTools SNP 45541 45541 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C1%3BMQ%3D47%3BFQ%3D75%3BPV4%3D0.1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1419 SAMTools SNP 45607 45607 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1419 SAMTools SNP 46042 46042 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.00051%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1419 SAMTools SNP 46436 46436 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.45%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 46463 46463 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1419 SAMTools SNP 46480 46480 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.11%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1419 SAMTools SNP 47355 47355 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.041%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1419 SAMTools SNP 47621 47621 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C63%2C0:99 scaffold1419 SAMTools SNP 48516 48516 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1419 SAMTools SNP 48534 48534 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C218:99 scaffold1419 SAMTools SNP 50410 50410 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1419 SAMTools SNP 50474 50474 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1419 SAMTools SNP 51043 51043 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 51082 51082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C10%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.22%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1419 SAMTools SNP 51932 51932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C11%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.021%2C0.44%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 51949 51949 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C0%2C4%3BMQ%3D49%3BFQ%3D30%3BPV4%3D0.04%2C0.48%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1419 SAMTools SNP 51980 51980 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C5%2C0%3BMQ%3D49%3BFQ%3D89%3BPV4%3D0.04%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1419 SAMTools SNP 52007 52007 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.052%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1419 SAMTools SNP 52051 52051 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C6%3BMQ%3D49%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1419 SAMTools SNP 52954 52954 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.34%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1419 SAMTools SNP 52969 52969 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 53711 53711 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C52%2C15%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0014%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold1419 SAMTools SNP 54659 54659 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1419 SAMTools SNP 54876 54876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1419 SAMTools SNP 55140 55140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1419 SAMTools SNP 55154 55154 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1419 SAMTools SNP 55182 55182 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1419 SAMTools SNP 55197 55197 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1419 SAMTools SNP 55521 55521 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1419 SAMTools SNP 55967 55967 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C14%2C9%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.38%2C1.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1419 SAMTools SNP 56269 56269 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold1419 SAMTools SNP 56371 56371 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C45%2C0:87 scaffold1419 SAMTools SNP 56380 56380 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1419 SAMTools SNP 56927 56927 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 56933 56933 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 56986 56986 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1419 SAMTools SNP 57014 57014 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C37:40 scaffold1419 SAMTools SNP 57015 57015 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1419 SAMTools SNP 57023 57023 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1419 SAMTools SNP 57471 57471 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1419 SAMTools SNP 58403 58403 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 58405 58405 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 58421 58421 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1419 SAMTools SNP 58454 58454 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1419 SAMTools SNP 58460 58460 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1419 SAMTools SNP 58830 58830 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1419 SAMTools SNP 60186 60186 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1419 SAMTools SNP 60202 60202 53.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1419 SAMTools SNP 60750 60750 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C63%2C0:99 scaffold1419 SAMTools SNP 63128 63128 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 64257 64257 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1419 SAMTools SNP 64291 64291 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1419 SAMTools SNP 67833 67833 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.43%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold1419 SAMTools SNP 68022 68022 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.00023%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1419 SAMTools SNP 70079 70079 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1419 SAMTools SNP 70942 70942 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1419 SAMTools SNP 73767 73767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1419 SAMTools SNP 79034 79034 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1419 SAMTools SNP 79035 79035 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1419 SAMTools SNP 79097 79097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C17%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold1419 SAMTools SNP 80241 80241 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1419 SAMTools SNP 86729 86729 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.015%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C179:59 scaffold1419 SAMTools SNP 87011 87011 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1419 SAMTools SNP 88097 88097 54.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1419 SAMTools SNP 88169 88169 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1419 SAMTools SNP 88882 88882 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1419 SAMTools SNP 101511 101511 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1419 SAMTools SNP 101558 101558 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1419 SAMTools SNP 102232 102232 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C33%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1419 SAMTools SNP 102418 102418 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1419 SAMTools SNP 103209 103209 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.014%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1419 SAMTools SNP 103218 103218 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.0053%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1419 SAMTools SNP 103578 103578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1419 SAMTools SNP 103835 103835 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1419 SAMTools SNP 104518 104518 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D29%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold1419 SAMTools SNP 104829 104829 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D32%3BFQ%3D10.3%3BPV4%3D1%2C0.29%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold1419 SAMTools SNP 106164 106164 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1419 SAMTools SNP 106179 106179 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1419 SAMTools SNP 107344 107344 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C13%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.017%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1419 SAMTools SNP 107684 107684 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00012%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1419 SAMTools SNP 107705 107705 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C0%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1419 SAMTools SNP 108584 108584 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1419 SAMTools SNP 108622 108622 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1419 SAMTools SNP 108948 108948 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C16%2C0%3BMQ%3D49%3BFQ%3D80%3BPV4%3D0.043%2C8.3e-10%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1419 SAMTools SNP 109247 109247 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.096%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C138:71 scaffold142 SAMTools SNP 38521 38521 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 38543 38543 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 178586 178586 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C33%2C0:63 scaffold142 SAMTools SNP 183922 183922 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C164:99 scaffold142 SAMTools SNP 183974 183974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold142 SAMTools SNP 185212 185212 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold142 SAMTools SNP 185501 185501 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold142 SAMTools SNP 188765 188765 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold142 SAMTools SNP 189901 189901 40.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold142 SAMTools SNP 190260 190260 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold142 SAMTools SNP 191813 191813 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 201946 201946 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D34%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C102:68 scaffold142 SAMTools SNP 201960 201960 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D33%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C42%2C0:81 scaffold142 SAMTools SNP 210536 210536 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 210541 210541 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 211718 211718 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold142 SAMTools SNP 212149 212149 24.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold142 SAMTools SNP 212509 212509 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.00021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C69:72 scaffold142 SAMTools SNP 215865 215865 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 215901 215901 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold142 SAMTools SNP 217276 217276 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.13%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C160:99 scaffold142 SAMTools SNP 220521 220521 11.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D17%3BFQ%3D-31%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C4%2C0:6 scaffold142 SAMTools SNP 222606 222606 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold142 SAMTools SNP 222612 222612 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold142 SAMTools SNP 222629 222629 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold142 SAMTools SNP 226424 226424 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 226774 226774 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C249:99 scaffold142 SAMTools SNP 227030 227030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold142 SAMTools SNP 227123 227123 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C23%2C21%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.0088%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 228168 228168 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 228171 228171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C96%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00093%2C0.05%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 228398 228398 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C1%2C32%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.25%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C252:99 scaffold142 SAMTools SNP 229129 229129 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold142 SAMTools SNP 229140 229140 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold142 SAMTools SNP 229159 229159 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 239975 239975 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 240339 240339 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 240399 240399 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold142 SAMTools SNP 241230 241230 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold142 SAMTools SNP 241278 241278 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C18%2C0:33 scaffold142 SAMTools SNP 241317 241317 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold142 SAMTools SNP 249872 249872 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 274780 274780 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold142 SAMTools SNP 396847 396847 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 396908 396908 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 418816 418816 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 421134 421134 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 421335 421335 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 421384 421384 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold142 SAMTools SNP 421397 421397 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 422419 422419 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold142 SAMTools SNP 422511 422511 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 424539 424539 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 428164 428164 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold142 SAMTools SNP 428217 428217 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 428321 428321 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 433096 433096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 467307 467307 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 470496 470496 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 472301 472301 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 472318 472318 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 479111 479111 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold142 SAMTools SNP 479429 479429 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold142 SAMTools SNP 480783 480783 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C96:99 scaffold142 SAMTools SNP 483088 483088 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold142 SAMTools SNP 483483 483483 25.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold142 SAMTools SNP 483979 483979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold142 SAMTools SNP 486465 486465 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.27%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C63:66 scaffold142 SAMTools SNP 486679 486679 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 499281 499281 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 501280 501280 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C14%2C3%2C7%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold142 SAMTools SNP 502502 502502 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold142 SAMTools SNP 503044 503044 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.44%2C0.017%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold142 SAMTools SNP 505691 505691 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold142 SAMTools SNP 506206 506206 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold142 SAMTools SNP 509710 509710 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.16%2C0.21%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C222:99 scaffold142 SAMTools SNP 514433 514433 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 514442 514442 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 517159 517159 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold142 SAMTools SNP 517308 517308 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 520051 520051 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold142 SAMTools SNP 520064 520064 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C84:87 scaffold142 SAMTools SNP 563809 563809 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0188%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D27%3BFQ%3D3.86%3BPV4%3D1%2C7.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C34:28 scaffold142 SAMTools SNP 578705 578705 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold142 SAMTools SNP 589440 589440 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 590185 590185 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold142 SAMTools SNP 603811 603811 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold142 SAMTools SNP 617244 617244 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C61:64 scaffold142 SAMTools SNP 622314 622314 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold142 SAMTools SNP 622346 622346 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C28%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.26%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold142 SAMTools SNP 623366 623366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold142 SAMTools SNP 623935 623935 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold142 SAMTools SNP 625837 625837 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 625845 625845 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 625866 625866 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 634026 634026 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold142 SAMTools SNP 668027 668027 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold142 SAMTools SNP 668399 668399 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 677176 677176 69.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold142 SAMTools SNP 677372 677372 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 677384 677384 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 698274 698274 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold142 SAMTools SNP 698275 698275 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 698338 698338 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold142 SAMTools SNP 699303 699303 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold142 SAMTools SNP 717999 717999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold142 SAMTools SNP 756558 756558 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold142 SAMTools SNP 756721 756721 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold142 SAMTools SNP 781407 781407 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold142 SAMTools SNP 799906 799906 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold142 SAMTools SNP 800372 800372 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold142 SAMTools SNP 801005 801005 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C5%2C142%2C11%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5e-188%2C1%2C4.4e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold142 SAMTools SNP 801071 801071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C140%2C106%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-12%2C1%2C1%2C1.7e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 801098 801098 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C206%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 801177 801177 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold142 SAMTools SNP 803079 803079 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold142 SAMTools SNP 803157 803157 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C268%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 803167 803167 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C34%2C131%2C17%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.64%2C9.7e-180%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold142 SAMTools SNP 803883 803883 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D549%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C252%2C14%2C270%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 803891 803891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C233%2C10%2C231%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 805493 805493 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold142 SAMTools SNP 806498 806498 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C0%2C8%3BMQ%3D49%3BFQ%3D140%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold142 SAMTools SNP 806508 806508 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold142 SAMTools SNP 806584 806584 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C2%2C5%3BMQ%3D49%3BFQ%3D86%3BPV4%3D0.028%2C1e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C231:99 scaffold142 SAMTools SNP 807224 807224 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold142 SAMTools SNP 807489 807489 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 808717 808717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold142 SAMTools SNP 808726 808726 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 808837 808837 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C24%2C0:45 scaffold142 SAMTools SNP 808870 808870 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C0%2C14%2C0%3BMQ%3D38%3BFQ%3D26%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C161:56 scaffold142 SAMTools SNP 808874 808874 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C93%2C0%3BMQ%3D38%3BFQ%3D41%3BPV4%3D1%2C0.092%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C68:71 scaffold142 SAMTools SNP 812067 812067 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold142 SAMTools SNP 812424 812424 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C0%2C45%2C0%3BMQ%3D37%3BFQ%3D24%3BPV4%3D1%2C1%2C0.19%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C154:54 scaffold142 SAMTools SNP 812502 812502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C75%3BMQ%3D45%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold142 SAMTools SNP 812538 812538 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C82%2C5%2C179%3BMQ%3D43%3BFQ%3D225%3BPV4%3D1.1e-12%2C1%2C0.0078%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 815042 815042 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D118%2C1%2C29%2C0%3BMQ%3D37%3BFQ%3D9.53%3BPV4%3D1%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C168:37 scaffold142 SAMTools SNP 815078 815078 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D25%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C132%2C0:99 scaffold142 SAMTools SNP 815099 815099 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C31%3BMQ%3D29%3BFQ%3D32%3BPV4%3D0.24%2C0.41%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C59:62 scaffold142 SAMTools SNP 817015 817015 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C4%3BMQ%3D22%3BFQ%3D5.14%3BPV4%3D0.61%2C1%2C0.098%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C32:34 scaffold142 SAMTools SNP 818026 818026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold142 SAMTools SNP 818511 818511 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C17%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C214%2C0:99 scaffold142 SAMTools SNP 819382 819382 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 819383 819383 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 820942 820942 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 832250 832250 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 832829 832829 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold142 SAMTools SNP 832862 832862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold142 SAMTools SNP 835721 835721 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.43%2C0.0076%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold142 SAMTools SNP 835778 835778 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold142 SAMTools SNP 836404 836404 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C30%2C0:57 scaffold142 SAMTools SNP 836448 836448 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold142 SAMTools SNP 839792 839792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold142 SAMTools SNP 882984 882984 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C192:99 scaffold142 SAMTools SNP 884611 884611 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D8.6e-05%2C0.22%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold142 SAMTools SNP 884797 884797 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C166%2C0:99 scaffold142 SAMTools SNP 884907 884907 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold142 SAMTools SNP 885043 885043 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 885064 885064 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 886416 886416 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold142 SAMTools SNP 886464 886464 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold142 SAMTools SNP 887193 887193 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C14%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.38%2C2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold142 SAMTools SNP 890130 890130 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 951645 951645 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold142 SAMTools SNP 958717 958717 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 958750 958750 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 959203 959203 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold142 SAMTools SNP 959230 959230 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 959233 959233 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 959812 959812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold142 SAMTools SNP 966174 966174 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C9%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold142 SAMTools SNP 966235 966235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold142 SAMTools SNP 966648 966648 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold142 SAMTools SNP 966669 966669 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C234:99 scaffold142 SAMTools SNP 968784 968784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C2%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold142 SAMTools SNP 969090 969090 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C44%2C7%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D0.026%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold142 SAMTools SNP 969592 969592 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold142 SAMTools SNP 969637 969637 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold142 SAMTools SNP 970271 970271 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 970283 970283 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold142 SAMTools SNP 970695 970695 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold142 SAMTools SNP 971031 971031 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold142 SAMTools SNP 971403 971403 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C247:99 scaffold142 SAMTools SNP 971412 971412 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold142 SAMTools SNP 971451 971451 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold142 SAMTools SNP 971668 971668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold142 SAMTools SNP 971686 971686 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold142 SAMTools SNP 974584 974584 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C253:99 scaffold142 SAMTools SNP 974615 974615 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold142 SAMTools SNP 975090 975090 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 975482 975482 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 975764 975764 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 975803 975803 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold142 SAMTools SNP 975833 975833 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold142 SAMTools SNP 976322 976322 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold142 SAMTools SNP 976811 976811 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.31%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C210:99 scaffold142 SAMTools SNP 976817 976817 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00046%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold142 SAMTools SNP 976841 976841 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C3%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold142 SAMTools SNP 977047 977047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C8%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold142 SAMTools SNP 977156 977156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 977719 977719 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.23%2C0.39%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold142 SAMTools SNP 978119 978119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold142 SAMTools SNP 978131 978131 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0073%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C222:42 scaffold142 SAMTools SNP 978140 978140 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold142 SAMTools SNP 978782 978782 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 978787 978787 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 982017 982017 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold142 SAMTools SNP 982242 982242 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold142 SAMTools SNP 985970 985970 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 989000 989000 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold142 SAMTools SNP 989054 989054 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold142 SAMTools SNP 989105 989105 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold142 SAMTools SNP 989721 989721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.34%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 989957 989957 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 992559 992559 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold142 SAMTools SNP 992566 992566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 992848 992848 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 993676 993676 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 993712 993712 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold142 SAMTools SNP 993757 993757 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.095%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold142 SAMTools SNP 994460 994460 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold142 SAMTools SNP 994465 994465 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold142 SAMTools SNP 994762 994762 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold142 SAMTools SNP 994983 994983 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold142 SAMTools SNP 995015 995015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold142 SAMTools SNP 995450 995450 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 995513 995513 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold142 SAMTools SNP 995931 995931 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold142 SAMTools SNP 995958 995958 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C237:99 scaffold142 SAMTools SNP 996259 996259 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C220:99 scaffold142 SAMTools SNP 996316 996316 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold142 SAMTools SNP 996520 996520 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.097%2C6.8e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold142 SAMTools SNP 996808 996808 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C22%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C172%2C0:99 scaffold142 SAMTools SNP 996883 996883 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C28%2C27%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C3.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold142 SAMTools SNP 996904 996904 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C24%2C14%2C23%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold142 SAMTools SNP 997253 997253 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C32%2C12%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.43%2C0.00013%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold142 SAMTools SNP 997853 997853 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C20:23 scaffold142 SAMTools SNP 997952 997952 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C33%2C0:63 scaffold142 SAMTools SNP 997964 997964 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C30%2C0:57 scaffold142 SAMTools SNP 998064 998064 45.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold142 SAMTools SNP 998137 998137 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C160%2C0:99 scaffold142 SAMTools SNP 998192 998192 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold142 SAMTools SNP 1001464 1001464 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold142 SAMTools SNP 1002007 1002007 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold142 SAMTools SNP 1002061 1002061 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C39%2C0:75 scaffold142 SAMTools SNP 1017228 1017228 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D48%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold142 SAMTools SNP 1019483 1019483 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D142%3BPV4%3D1%2C0.004%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C234:99 scaffold142 SAMTools SNP 1019812 1019812 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C1%2C11%3BMQ%3D48%3BFQ%3D195%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold142 SAMTools SNP 1019845 1019845 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C10%3BMQ%3D47%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C234:99 scaffold142 SAMTools SNP 1020238 1020238 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold142 SAMTools SNP 1020593 1020593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold142 SAMTools SNP 1020608 1020608 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold142 SAMTools SNP 1021056 1021056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C15%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold142 SAMTools SNP 1021149 1021149 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C8%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.057%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold142 SAMTools SNP 1024239 1024239 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C26%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold142 SAMTools SNP 1025288 1025288 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1026024 1026024 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold142 SAMTools SNP 1026141 1026141 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C7%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.35%2C0.034%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold142 SAMTools SNP 1026900 1026900 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.51%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold142 SAMTools SNP 1027020 1027020 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1027050 1027050 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.082%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold142 SAMTools SNP 1027326 1027326 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.43%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold142 SAMTools SNP 1027341 1027341 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C171%2C147:45 scaffold142 SAMTools SNP 1027356 1027356 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C43:46 scaffold142 SAMTools SNP 1027376 1027376 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold142 SAMTools SNP 1031312 1031312 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C112:58 scaffold142 SAMTools SNP 1033313 1033313 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold142 SAMTools SNP 1033359 1033359 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold142 SAMTools SNP 1037435 1037435 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1037450 1037450 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1037474 1037474 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold142 SAMTools SNP 1041543 1041543 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold142 SAMTools SNP 1041579 1041579 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold142 SAMTools SNP 1042217 1042217 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1042222 1042222 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1048229 1048229 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C56%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.4e-89%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold142 SAMTools SNP 1048710 1048710 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold142 SAMTools SNP 1048746 1048746 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold142 SAMTools SNP 1049015 1049015 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.8e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C189:95 scaffold142 SAMTools SNP 1049518 1049518 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C54%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 1050578 1050578 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold142 SAMTools SNP 1051126 1051126 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C128%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.072%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 1052983 1052983 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C8%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1053007 1053007 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C38%2C0%2C34%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.7e-09%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold142 SAMTools SNP 1053472 1053472 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C40%2C45%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1053553 1053553 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 1055630 1055630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C14%2C85%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1056484 1056484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1056694 1056694 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold142 SAMTools SNP 1056917 1056917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold142 SAMTools SNP 1057249 1057249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold142 SAMTools SNP 1057282 1057282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold142 SAMTools SNP 1057305 1057305 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold142 SAMTools SNP 1058977 1058977 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1060297 1060297 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C59%2C4%2C58%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.067%2C1e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold142 SAMTools SNP 1060505 1060505 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C17%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C111%2C0:99 scaffold142 SAMTools SNP 1060737 1060737 15.9 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C24%2C46%2C0%2C43:10 scaffold142 SAMTools SNP 1062749 1062749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold142 SAMTools SNP 1065354 1065354 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C11%2C32%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.64%2C2.1e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold142 SAMTools SNP 1065558 1065558 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C61%2C0%2C36%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1.5e-06%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold142 SAMTools SNP 1066361 1066361 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C54%2C5%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1066399 1066399 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C32%2C33%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.19%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold142 SAMTools SNP 1066513 1066513 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C4.8e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold142 SAMTools SNP 1066862 1066862 42 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C47%2C38%2C71%2C0%2C68:16 scaffold142 SAMTools SNP 1068101 1068101 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold142 SAMTools SNP 1070588 1070588 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C15%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.38%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold142 SAMTools SNP 1076109 1076109 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold142 SAMTools SNP 1099655 1099655 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold142 SAMTools SNP 1099694 1099694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold142 SAMTools SNP 1101344 1101344 17.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold142 SAMTools SNP 1101395 1101395 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1101416 1101416 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold142 SAMTools SNP 1102865 1102865 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold142 SAMTools SNP 1102892 1102892 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold142 SAMTools SNP 1102904 1102904 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold142 SAMTools SNP 1103339 1103339 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold142 SAMTools SNP 1109505 1109505 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1114689 1114689 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 1115108 1115108 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold142 SAMTools SNP 1115111 1115111 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C24%2C86%2C0%2C83:10 scaffold142 SAMTools SNP 1115134 1115134 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold142 SAMTools SNP 1115724 1115724 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold142 SAMTools SNP 1115730 1115730 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold142 SAMTools SNP 1115790 1115790 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1116464 1116464 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold142 SAMTools SNP 1116510 1116510 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold142 SAMTools SNP 1116848 1116848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold142 SAMTools SNP 1116896 1116896 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold142 SAMTools SNP 1116965 1116965 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1116986 1116986 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 1117001 1117001 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold142 SAMTools SNP 1117596 1117596 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1118254 1118254 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C230:99 scaffold142 SAMTools SNP 1118716 1118716 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold142 SAMTools SNP 1118719 1118719 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold142 SAMTools SNP 1118953 1118953 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1119383 1119383 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1119434 1119434 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1119982 1119982 58.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold142 SAMTools SNP 1120015 1120015 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold142 SAMTools SNP 1120537 1120537 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold142 SAMTools SNP 1120735 1120735 80.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold142 SAMTools SNP 1121339 1121339 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold142 SAMTools SNP 1121399 1121399 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold142 SAMTools SNP 1121640 1121640 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold142 SAMTools SNP 1122357 1122357 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold142 SAMTools SNP 1122410 1122410 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold142 SAMTools SNP 1124917 1124917 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C13%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C6.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold142 SAMTools SNP 1125025 1125025 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.058%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold142 SAMTools SNP 1125398 1125398 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold142 SAMTools SNP 1125816 1125816 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold142 SAMTools SNP 1125867 1125867 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C239:99 scaffold142 SAMTools SNP 1125882 1125882 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C245:99 scaffold142 SAMTools SNP 1126402 1126402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold142 SAMTools SNP 1127786 1127786 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold142 SAMTools SNP 1127971 1127971 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0026%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold142 SAMTools SNP 1129295 1129295 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold142 SAMTools SNP 1129316 1129316 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.49%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold142 SAMTools SNP 1129346 1129346 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold142 SAMTools SNP 1130164 1130164 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C133:99 scaffold142 SAMTools SNP 1132669 1132669 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold142 SAMTools SNP 1133808 1133808 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold142 SAMTools SNP 1133829 1133829 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold142 SAMTools SNP 1134590 1134590 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.045%2C5.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold142 SAMTools SNP 1134658 1134658 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold142 SAMTools SNP 1137764 1137764 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold142 SAMTools SNP 1137834 1137834 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold142 SAMTools SNP 1140968 1140968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1140982 1140982 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1141049 1141049 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold142 SAMTools SNP 1143537 1143537 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold142 SAMTools SNP 1143555 1143555 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold142 SAMTools SNP 1151842 1151842 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C32:35 scaffold142 SAMTools SNP 1156313 1156313 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold142 SAMTools SNP 1157079 1157079 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold142 SAMTools SNP 1158369 1158369 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold142 SAMTools SNP 1163845 1163845 5.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C12%2C0:12 scaffold1423 SAMTools SNP 2262 2262 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold1423 SAMTools SNP 4072 4072 40.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1423 SAMTools SNP 4729 4729 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1423 SAMTools SNP 7400 7400 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C170:78 scaffold1423 SAMTools SNP 7499 7499 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.019%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C225:85 scaffold1423 SAMTools SNP 8232 8232 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 10942 10942 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C60%2C0:99 scaffold1423 SAMTools SNP 11297 11297 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1423 SAMTools SNP 11340 11340 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C24%2C0:45 scaffold1423 SAMTools SNP 11467 11467 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.44%2C4.7e-13%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C152:37 scaffold1423 SAMTools SNP 14337 14337 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1423 SAMTools SNP 17634 17634 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1423 SAMTools SNP 18143 18143 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1423 SAMTools SNP 20999 20999 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1423 SAMTools SNP 21308 21308 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1423 SAMTools SNP 22291 22291 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 22607 22607 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1423 SAMTools SNP 22633 22633 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1423 SAMTools SNP 26425 26425 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C79:81 scaffold1423 SAMTools SNP 27834 27834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1423 SAMTools SNP 28142 28142 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 28173 28173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 28665 28665 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 29593 29593 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 29613 29613 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1423 SAMTools SNP 30411 30411 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1423 SAMTools SNP 30480 30480 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1423 SAMTools SNP 32064 32064 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1423 SAMTools SNP 32124 32124 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1423 SAMTools SNP 32447 32447 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1423 SAMTools SNP 34847 34847 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C188:48 scaffold1423 SAMTools SNP 34904 34904 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C153:99 scaffold1423 SAMTools SNP 34907 34907 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C182:99 scaffold1423 SAMTools SNP 36697 36697 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 37240 37240 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 37330 37330 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 37336 37336 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 37529 37529 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.03%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1423 SAMTools SNP 43002 43002 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1423 SAMTools SNP 65667 65667 47.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1423 SAMTools SNP 66580 66580 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 85890 85890 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1423 SAMTools SNP 88045 88045 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1423 SAMTools SNP 88061 88061 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1423 SAMTools SNP 88278 88278 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2212%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C51%2C0:99 scaffold1423 SAMTools SNP 88478 88478 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1386%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D542%2C319%2C266%2C221%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1.7e-67%2C1%2C5.1e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 88511 88511 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D232%2C476%2C114%2C261%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 88874 88874 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1041%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C187%2C17%2C350%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-59%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 91286 91286 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D735%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C285%2C47%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-17%2C9.3e-15%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 91580 91580 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D881%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C289%2C335%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-44%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 92393 92393 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1423 SAMTools SNP 106021 106021 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C33:36 scaffold1423 SAMTools SNP 119095 119095 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 119191 119191 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.019%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1423 SAMTools SNP 119212 119212 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.051%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1423 SAMTools SNP 119972 119972 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.11%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1423 SAMTools SNP 130234 130234 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 133959 133959 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1423 SAMTools SNP 135688 135688 40.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1423 SAMTools SNP 136066 136066 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C255%2C0:99 scaffold1423 SAMTools SNP 140155 140155 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C124:93 scaffold1423 SAMTools SNP 140357 140357 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1423 SAMTools SNP 141670 141670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0093%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 142801 142801 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C0%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-05%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 142849 142849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1423 SAMTools SNP 143342 143342 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1423 SAMTools SNP 143402 143402 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 143993 143993 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C165:99 scaffold1423 SAMTools SNP 144091 144091 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0126%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.53%2C0.0019%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1423 SAMTools SNP 144238 144238 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.42%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1423 SAMTools SNP 147449 147449 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1423 SAMTools SNP 148117 148117 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C4%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1423 SAMTools SNP 148171 148171 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C29%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1423 SAMTools SNP 149282 149282 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0037%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 149346 149346 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1423 SAMTools SNP 149384 149384 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.39%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1423 SAMTools SNP 150597 150597 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.4%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1423 SAMTools SNP 153133 153133 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1423 SAMTools SNP 153157 153157 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1423 SAMTools SNP 153217 153217 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1423 SAMTools SNP 153511 153511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1423 SAMTools SNP 167226 167226 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1423 SAMTools SNP 168298 168298 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1423 SAMTools SNP 168871 168871 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.0016%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 168907 168907 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C4%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.15%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1423 SAMTools SNP 169160 169160 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C6.1e-11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C245:68 scaffold1423 SAMTools SNP 169547 169547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 170556 170556 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.27%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1423 SAMTools SNP 170565 170565 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.53%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1423 SAMTools SNP 170805 170805 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold1423 SAMTools SNP 171044 171044 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold1423 SAMTools SNP 171067 171067 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1423 SAMTools SNP 171558 171558 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C36%2C0:69 scaffold1423 SAMTools SNP 171588 171588 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1423 SAMTools SNP 171624 171624 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1423 SAMTools SNP 171843 171843 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1423 SAMTools SNP 172128 172128 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1423 SAMTools SNP 172167 172167 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1423 SAMTools SNP 172209 172209 51.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1423 SAMTools SNP 173401 173401 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.0053%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1423 SAMTools SNP 173783 173783 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1423 SAMTools SNP 174012 174012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1423 SAMTools SNP 174048 174048 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 174067 174067 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1423 SAMTools SNP 174081 174081 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1423 SAMTools SNP 174087 174087 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1423 SAMTools SNP 177418 177418 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C16%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.34%2C1.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1423 SAMTools SNP 178131 178131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 178922 178922 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1423 SAMTools SNP 179722 179722 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1423 SAMTools SNP 179725 179725 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1423 SAMTools SNP 180239 180239 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C13%2C30%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.59%2C1.4e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1423 SAMTools SNP 180279 180279 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 180496 180496 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C33%2C54%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.33%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 180580 180580 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1423 SAMTools SNP 180582 180582 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C44%2C41%2C47%2C0%2C44:6 scaffold1423 SAMTools SNP 182588 182588 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 183244 183244 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 183295 183295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C68%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1423 SAMTools SNP 183304 183304 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1423 SAMTools SNP 183653 183653 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.066%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C209:41 scaffold1423 SAMTools SNP 183725 183725 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 184056 184056 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1423 SAMTools SNP 184269 184269 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold1423 SAMTools SNP 184580 184580 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.032%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1423 SAMTools SNP 185575 185575 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1423 SAMTools SNP 187218 187218 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1423 SAMTools SNP 187537 187537 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C66%2C0:99 scaffold1423 SAMTools SNP 188714 188714 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1423 SAMTools SNP 188801 188801 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1423 SAMTools SNP 188928 188928 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C10%2C42%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.79%2C5e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1423 SAMTools SNP 189176 189176 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1423 SAMTools SNP 195126 195126 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1423 SAMTools SNP 195162 195162 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold1423 SAMTools SNP 196496 196496 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.22%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C217:69 scaffold1423 SAMTools SNP 197373 197373 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1423 SAMTools SNP 198132 198132 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1423 SAMTools SNP 198147 198147 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1423 SAMTools SNP 198219 198219 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold1423 SAMTools SNP 199315 199315 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1423 SAMTools SNP 199714 199714 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.018%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C191:66 scaffold1423 SAMTools SNP 199752 199752 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1423 SAMTools SNP 201008 201008 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1423 SAMTools SNP 203132 203132 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold1423 SAMTools SNP 206422 206422 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C106%2C2%2C32%3BMQ%3D50%3BFQ%3D36%3BPV4%3D5e-05%2C1%2C1%2C5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1423 SAMTools SNP 206607 206607 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C75%2C3%2C19%3BMQ%3D48%3BFQ%3D187%3BPV4%3D1%2C1%2C0.052%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1423 SAMTools SNP 209121 209121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C93%2C70%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 209136 209136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C90%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.29%2C0.27%2C0.44%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 209232 209232 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C16%3BMQ%3D48%3BFQ%3D-64%3BPV4%3D1%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1423 SAMTools SNP 209628 209628 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C28%2C11%3BMQ%3D49%3BFQ%3D-97%3BPV4%3D0.3%2C0.36%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1423 SAMTools SNP 212789 212789 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.15%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1423 SAMTools SNP 212805 212805 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1423 SAMTools SNP 213193 213193 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 213220 213220 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 213334 213334 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C32%2C5%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0041%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1423 SAMTools SNP 213358 213358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C70%2C10%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 214737 214737 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C35%2C55%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 219246 219246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 317813 317813 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C160%2C0:99 scaffold1423 SAMTools SNP 321260 321260 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1423 SAMTools SNP 322351 322351 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C42%2C0:81 scaffold1423 SAMTools SNP 322585 322585 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C21%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D4.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1423 SAMTools SNP 324747 324747 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1423 SAMTools SNP 325938 325938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C55%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 329816 329816 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C19%2C12%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.29%2C0.41%2C0.082%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 329834 329834 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C11%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 329852 329852 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C31%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1423 SAMTools SNP 330980 330980 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C2%2C14%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.7%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1423 SAMTools SNP 332772 332772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1423 SAMTools SNP 332869 332869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C21%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1423 SAMTools SNP 364121 364121 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1423 SAMTools SNP 365384 365384 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1423 SAMTools SNP 365393 365393 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1423 SAMTools SNP 365965 365965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1423 SAMTools SNP 365985 365985 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 370200 370200 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.035%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C218:40 scaffold1423 SAMTools SNP 376243 376243 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C183:99 scaffold1423 SAMTools SNP 376884 376884 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 377826 377826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 377874 377874 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1423 SAMTools SNP 377961 377961 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1423 SAMTools SNP 378097 378097 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1423 SAMTools SNP 378147 378147 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 378169 378169 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1423 SAMTools SNP 380102 380102 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1423 SAMTools SNP 380946 380946 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C90%2C0:99 scaffold1423 SAMTools SNP 380968 380968 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 381660 381660 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.38%2C3.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1423 SAMTools SNP 381795 381795 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1423 SAMTools SNP 384707 384707 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 385377 385377 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1423 SAMTools SNP 385461 385461 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 385760 385760 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 386580 386580 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1423 SAMTools SNP 386961 386961 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C81%2C0:99 scaffold1423 SAMTools SNP 386978 386978 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C9e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C240:40 scaffold1423 SAMTools SNP 387343 387343 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1423 SAMTools SNP 392529 392529 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1423 SAMTools SNP 392586 392586 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C13%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C2.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1423 SAMTools SNP 392634 392634 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C236%2C200:55 scaffold1423 SAMTools SNP 393047 393047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1423 SAMTools SNP 393681 393681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1423 SAMTools SNP 394024 394024 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.56%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1423 SAMTools SNP 398583 398583 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C19%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C250:99 scaffold1423 SAMTools SNP 417096 417096 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1423 SAMTools SNP 417889 417889 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1423 SAMTools SNP 418398 418398 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C39%2C0:75 scaffold1423 SAMTools SNP 425811 425811 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1423 SAMTools SNP 426201 426201 81.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold1423 SAMTools SNP 464367 464367 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1423 SAMTools SNP 464679 464679 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C15%2C0:27 scaffold1423 SAMTools SNP 495297 495297 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 504631 504631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C19%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 511412 511412 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C30%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.42%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1423 SAMTools SNP 512836 512836 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1423 SAMTools SNP 523514 523514 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36.9%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C80:67 scaffold1423 SAMTools SNP 525233 525233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 529499 529499 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1423 SAMTools SNP 530036 530036 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1423 SAMTools SNP 567382 567382 55.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold1423 SAMTools SNP 569065 569065 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C63%2C8%2C37%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.8%2C0.21%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 570372 570372 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.35%2C0.27%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1423 SAMTools SNP 570667 570667 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1423 SAMTools SNP 572810 572810 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C36%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 575144 575144 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C39%2C10%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0011%2C0.078%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1423 SAMTools SNP 575213 575213 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C317%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 578177 578177 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1423 SAMTools SNP 582184 582184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C44%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 582805 582805 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C68%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.41%2C1%2C9.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 582826 582826 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C70%2C5%2C15%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.61%2C3.2e-07%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1423 SAMTools SNP 582847 582847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C36%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1423 SAMTools SNP 582940 582940 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1423 SAMTools SNP 582988 582988 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1423 SAMTools SNP 589051 589051 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1423 SAMTools SNP 589069 589069 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold1423 SAMTools SNP 592043 592043 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C0.00032%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1423 SAMTools SNP 592204 592204 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C9.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C246:99 scaffold1423 SAMTools SNP 592735 592735 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 594233 594233 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1423 SAMTools SNP 597053 597053 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C7%2C25%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.33%2C6.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1423 SAMTools SNP 598575 598575 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C174:99 scaffold1423 SAMTools SNP 599543 599543 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 602564 602564 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C210:99 scaffold1423 SAMTools SNP 607341 607341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1423 SAMTools SNP 607729 607729 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.45%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1423 SAMTools SNP 608363 608363 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C47%2C0%2C31%3BMQ%3D50%3BFQ%3D84%3BPV4%3D7.7e-07%2C1.6e-08%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1423 SAMTools SNP 608372 608372 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C56%2C0%2C31%3BMQ%3D50%3BFQ%3D67%3BPV4%3D4.6e-05%2C5.1e-10%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1423 SAMTools SNP 615985 615985 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1423 SAMTools SNP 618600 618600 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold1423 SAMTools SNP 618658 618658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1423 SAMTools SNP 635283 635283 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1423 SAMTools SNP 642966 642966 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C193:99 scaffold1423 SAMTools SNP 643223 643223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 646093 646093 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 646121 646121 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1423 SAMTools SNP 646134 646134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1423 SAMTools SNP 646156 646156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1423 SAMTools SNP 646486 646486 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1423 SAMTools SNP 653648 653648 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C48%2C0:93 scaffold1423 SAMTools SNP 654206 654206 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 655934 655934 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 656038 656038 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1423 SAMTools SNP 657937 657937 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1423 SAMTools SNP 686727 686727 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 698530 698530 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 723940 723940 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1423 SAMTools SNP 724777 724777 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D15%3BFQ%3D-61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C34%2C0:60 scaffold1423 SAMTools SNP 732537 732537 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1423 SAMTools SNP 733504 733504 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 733515 733515 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 734331 734331 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold1423 SAMTools SNP 736013 736013 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 736023 736023 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 736247 736247 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1423 SAMTools SNP 736333 736333 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1423 SAMTools SNP 749781 749781 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1423 SAMTools SNP 793913 793913 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1423 SAMTools SNP 794455 794455 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1423 SAMTools SNP 800607 800607 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 801839 801839 51.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1423 SAMTools SNP 835739 835739 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 835765 835765 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 851273 851273 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C241%2C0:99 scaffold1423 SAMTools SNP 851814 851814 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C26%2C1%2C14%3BMQ%3D49%3BFQ%3D97%3BPV4%3D0.00029%2C0.00066%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1423 SAMTools SNP 859703 859703 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1423 SAMTools SNP 861666 861666 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1423 SAMTools SNP 871322 871322 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1423 SAMTools SNP 875833 875833 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C0.17%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1423 SAMTools SNP 876027 876027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1423 SAMTools SNP 876420 876420 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C8:75 scaffold1423 SAMTools SNP 876483 876483 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold1423 SAMTools SNP 876817 876817 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C175:99 scaffold1423 SAMTools SNP 877078 877078 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1423 SAMTools SNP 879568 879568 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.077%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1423 SAMTools SNP 879965 879965 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1423 SAMTools SNP 880185 880185 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.5%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C138:99 scaffold1423 SAMTools SNP 880262 880262 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1423 SAMTools SNP 880996 880996 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1423 SAMTools SNP 881872 881872 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold1423 SAMTools SNP 882493 882493 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1423 SAMTools SNP 882528 882528 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 882561 882561 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1423 SAMTools SNP 882567 882567 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1423 SAMTools SNP 882979 882979 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C7.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C107:46 scaffold1423 SAMTools SNP 883713 883713 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 887520 887520 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1423 SAMTools SNP 887783 887783 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1423 SAMTools SNP 891711 891711 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.046%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold1423 SAMTools SNP 893553 893553 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C196:99 scaffold1423 SAMTools SNP 893874 893874 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C4.8e-15%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C213:82 scaffold1423 SAMTools SNP 893965 893965 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.2e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C245:41 scaffold1423 SAMTools SNP 897070 897070 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.09%2C1.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1423 SAMTools SNP 897559 897559 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1423 SAMTools SNP 898466 898466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C24%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1423 SAMTools SNP 898532 898532 54.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1423 SAMTools SNP 898619 898619 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 898670 898670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 898924 898924 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 901643 901643 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1423 SAMTools SNP 901703 901703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C16%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1423 SAMTools SNP 904983 904983 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1423 SAMTools SNP 908807 908807 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1423 SAMTools SNP 908810 908810 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1423 SAMTools SNP 908852 908852 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1423 SAMTools SNP 908864 908864 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1423 SAMTools SNP 911086 911086 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C9%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 911110 911110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C51%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.42%2C7.8e-15%2C0.38%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 911200 911200 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C10%2C24%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C1%2C0.23%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 911430 911430 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C58%3BMQ%3D50%3BFQ%3D-167%3BPV4%3D1%2C0.29%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C140%2C0:99 scaffold1423 SAMTools SNP 911451 911451 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1423 SAMTools SNP 911844 911844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C215%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 911982 911982 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C126%2C54%2C136%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C1.6e-19%2C0.087%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 913394 913394 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C58%2C17%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 913465 913465 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 913612 913612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 913936 913936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C17%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1423 SAMTools SNP 913996 913996 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C44%2C43%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C2.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 914731 914731 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1423 SAMTools SNP 915380 915380 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C9%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 915426 915426 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 917699 917699 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C12%2C26%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.07%2C1%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1423 SAMTools SNP 920821 920821 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C95%2C0%2C24%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C222:97 scaffold1423 SAMTools SNP 925936 925936 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1423 SAMTools SNP 926068 926068 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1423 SAMTools SNP 926993 926993 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1423 SAMTools SNP 933481 933481 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D40%3BFQ%3D45%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C108:75 scaffold1423 SAMTools SNP 933496 933496 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C163:74 scaffold1423 SAMTools SNP 936131 936131 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1423 SAMTools SNP 936254 936254 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1423 SAMTools SNP 936325 936325 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D94.8%3BPV4%3D0.43%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C134:99 scaffold1423 SAMTools SNP 951800 951800 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1423 SAMTools SNP 953166 953166 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1918%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C987%2C0%2C931%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1423 SAMTools SNP 953169 953169 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.095%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C221:86 scaffold1423 SAMTools SNP 953182 953182 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1423 SAMTools SNP 953187 953187 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 958264 958264 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1423 SAMTools SNP 958285 958285 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1423 SAMTools SNP 958869 958869 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 962004 962004 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C1.4e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C162:47 scaffold1423 SAMTools SNP 962980 962980 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1423 SAMTools SNP 963261 963261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1423 SAMTools SNP 963309 963309 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1423 SAMTools SNP 963340 963340 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.01%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1423 SAMTools SNP 964096 964096 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1423 SAMTools SNP 964355 964355 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C20%2C28%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.3%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 964529 964529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 965149 965149 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold1423 SAMTools SNP 965769 965769 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1423 SAMTools SNP 965828 965828 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1423 SAMTools SNP 966085 966085 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 966241 966241 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.21%2C0.016%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C207:99 scaffold1423 SAMTools SNP 967177 967177 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C227:66 scaffold1423 SAMTools SNP 967708 967708 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1423 SAMTools SNP 968150 968150 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.42%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1423 SAMTools SNP 968229 968229 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.07%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1423 SAMTools SNP 969054 969054 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.52%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C204:99 scaffold1423 SAMTools SNP 969477 969477 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1423 SAMTools SNP 969516 969516 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1423 SAMTools SNP 969588 969588 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1423 SAMTools SNP 970141 970141 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1423 SAMTools SNP 970160 970160 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1423 SAMTools SNP 970635 970635 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1423 SAMTools SNP 970636 970636 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold1423 SAMTools SNP 970915 970915 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1423 SAMTools SNP 972930 972930 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1423 SAMTools SNP 972950 972950 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1423 SAMTools SNP 973514 973514 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1423 SAMTools SNP 974972 974972 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1423 SAMTools SNP 975002 975002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1423 SAMTools SNP 976913 976913 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1423 SAMTools SNP 999943 999943 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1423 SAMTools SNP 1000337 1000337 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C1%3BMQ%3D33%3BFQ%3D47%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C170:77 scaffold1423 SAMTools SNP 1000356 1000356 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C4%2C1%3BMQ%3D29%3BFQ%3D28%3BPV4%3D0.14%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C149:58 scaffold1423 SAMTools SNP 1000407 1000407 4.76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D10%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C90%2C0:42 scaffold1423 SAMTools SNP 1002153 1002153 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1423 SAMTools SNP 1002609 1002609 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C2%3BMQ%3D47%3BFQ%3D108%3BPV4%3D0.22%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1423 SAMTools SNP 1003195 1003195 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold1423 SAMTools SNP 1006084 1006084 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1423 SAMTools SNP 1006567 1006567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C39%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1423 SAMTools SNP 1006576 1006576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C44%3BMQ%3D49%3BFQ%3D-150%3BPV4%3D0.2%2C1%2C0.42%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1423 SAMTools SNP 1014267 1014267 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1423 SAMTools SNP 1014723 1014723 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1423 SAMTools SNP 1019835 1019835 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1423 SAMTools SNP 1022116 1022116 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1423 SAMTools SNP 1022150 1022150 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1423 SAMTools SNP 1022529 1022529 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1423 SAMTools SNP 1022587 1022587 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1423 SAMTools SNP 1029461 1029461 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1423 SAMTools SNP 1067154 1067154 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C107:41 scaffold1423 SAMTools SNP 1067396 1067396 97.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C18%2C0:33 scaffold1424 SAMTools SNP 6967 6967 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1424 SAMTools SNP 26167 26167 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1424 SAMTools SNP 82609 82609 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1424 SAMTools SNP 102910 102910 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1424 SAMTools SNP 119751 119751 56.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold1424 SAMTools SNP 123076 123076 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold1424 SAMTools SNP 123129 123129 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C26%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C102%2C0:99 scaffold1424 SAMTools SNP 123353 123353 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C60%2C0:99 scaffold1424 SAMTools SNP 123523 123523 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C42%2C0:81 scaffold1427 SAMTools SNP 1488 1488 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C111%2C0:99 scaffold1427 SAMTools SNP 2363 2363 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1427 SAMTools SNP 2541 2541 37.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1427 SAMTools SNP 2576 2576 27.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold1427 SAMTools SNP 2638 2638 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C33%2C0:63 scaffold1427 SAMTools SNP 3054 3054 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1427 SAMTools SNP 8832 8832 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C39:42 scaffold1427 SAMTools SNP 9493 9493 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D45%3BFQ%3D27%3BPV4%3D0.0048%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C132:57 scaffold1427 SAMTools SNP 10033 10033 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1427 SAMTools SNP 10066 10066 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1427 SAMTools SNP 11529 11529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.038%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1427 SAMTools SNP 12443 12443 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold1427 SAMTools SNP 12485 12485 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1427 SAMTools SNP 13468 13468 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1427 SAMTools SNP 13510 13510 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1427 SAMTools SNP 14194 14194 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1427 SAMTools SNP 14245 14245 84.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0%2C105%2C0%2C102:39 scaffold1427 SAMTools SNP 15053 15053 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1427 SAMTools SNP 15056 15056 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1427 SAMTools SNP 41945 41945 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1427 SAMTools SNP 77316 77316 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1427 SAMTools SNP 103177 103177 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1427 SAMTools SNP 105201 105201 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1427 SAMTools SNP 105241 105241 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1427 SAMTools SNP 111985 111985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C35%2C1%3BMQ%3D50%3BFQ%3D-105%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1427 SAMTools SNP 111988 111988 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.54%2C0.45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1427 SAMTools SNP 112556 112556 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.28%2C0.0047%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1427 SAMTools SNP 112910 112910 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.052%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1427 SAMTools SNP 112911 112911 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1427 SAMTools SNP 112913 112913 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1427 SAMTools SNP 116261 116261 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1427 SAMTools SNP 116350 116350 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1427 SAMTools SNP 116846 116846 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold143 SAMTools SNP 56146 56146 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold143 SAMTools SNP 59762 59762 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold143 SAMTools SNP 59788 59788 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C79:30 scaffold143 SAMTools SNP 61625 61625 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold143 SAMTools SNP 61800 61800 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold143 SAMTools SNP 61808 61808 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold143 SAMTools SNP 86484 86484 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold143 SAMTools SNP 86703 86703 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold143 SAMTools SNP 87108 87108 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold143 SAMTools SNP 87116 87116 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold143 SAMTools SNP 87399 87399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold143 SAMTools SNP 87435 87435 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0081%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold143 SAMTools SNP 87718 87718 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D37%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C1%2C1%2C8.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold143 SAMTools SNP 87740 87740 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold143 SAMTools SNP 88099 88099 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold143 SAMTools SNP 88247 88247 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold143 SAMTools SNP 88250 88250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.038%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 88529 88529 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C27%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 88727 88727 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 89318 89318 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.088%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold143 SAMTools SNP 92753 92753 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.64%2C0.021%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold143 SAMTools SNP 93071 93071 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.62%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold143 SAMTools SNP 93397 93397 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.054%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold143 SAMTools SNP 93403 93403 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 94583 94583 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 94628 94628 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 94665 94665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C3%2C154%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.37%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 96740 96740 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C218:39 scaffold143 SAMTools SNP 97208 97208 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C45%2C0:87 scaffold143 SAMTools SNP 97459 97459 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C35:38 scaffold143 SAMTools SNP 97543 97543 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold143 SAMTools SNP 105819 105819 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold143 SAMTools SNP 106334 106334 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 106459 106459 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C57:60 scaffold143 SAMTools SNP 106520 106520 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C0.17%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold143 SAMTools SNP 110186 110186 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C130:77 scaffold143 SAMTools SNP 117801 117801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C52%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold143 SAMTools SNP 122056 122056 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold143 SAMTools SNP 122066 122066 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold143 SAMTools SNP 127768 127768 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold143 SAMTools SNP 127948 127948 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold143 SAMTools SNP 127988 127988 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold143 SAMTools SNP 128487 128487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.49%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold143 SAMTools SNP 128495 128495 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold143 SAMTools SNP 128724 128724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold143 SAMTools SNP 128984 128984 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold143 SAMTools SNP 129017 129017 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold143 SAMTools SNP 129068 129068 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 129071 129071 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold143 SAMTools SNP 129289 129289 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold143 SAMTools SNP 129713 129713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 129969 129969 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold143 SAMTools SNP 130175 130175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C26%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 130627 130627 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold143 SAMTools SNP 130880 130880 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C88:91 scaffold143 SAMTools SNP 130974 130974 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold143 SAMTools SNP 131124 131124 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.4%2C0.18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C190:99 scaffold143 SAMTools SNP 131404 131404 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.00081%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold143 SAMTools SNP 131416 131416 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold143 SAMTools SNP 131419 131419 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C253:94 scaffold143 SAMTools SNP 131482 131482 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C13%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold143 SAMTools SNP 131729 131729 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold143 SAMTools SNP 131786 131786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C13%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold143 SAMTools SNP 131972 131972 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C184:30 scaffold143 SAMTools SNP 131975 131975 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold143 SAMTools SNP 131995 131995 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold143 SAMTools SNP 132165 132165 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 132327 132327 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 132402 132402 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C82:75 scaffold143 SAMTools SNP 132712 132712 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold143 SAMTools SNP 132721 132721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold143 SAMTools SNP 132748 132748 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold143 SAMTools SNP 132808 132808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold143 SAMTools SNP 133130 133130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 133163 133163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.37%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 133221 133221 41.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold143 SAMTools SNP 133611 133611 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold143 SAMTools SNP 133766 133766 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold143 SAMTools SNP 133805 133805 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C5e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C250:55 scaffold143 SAMTools SNP 133901 133901 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C55%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold143 SAMTools SNP 133916 133916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold143 SAMTools SNP 134340 134340 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold143 SAMTools SNP 134391 134391 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold143 SAMTools SNP 134412 134412 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold143 SAMTools SNP 134419 134419 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold143 SAMTools SNP 134630 134630 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold143 SAMTools SNP 135322 135322 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold143 SAMTools SNP 136921 136921 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.2%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C227:86 scaffold143 SAMTools SNP 136927 136927 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.37%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C194:99 scaffold143 SAMTools SNP 136948 136948 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C226:61 scaffold143 SAMTools SNP 137362 137362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 137425 137425 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.24%2C1.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C129:90 scaffold143 SAMTools SNP 137551 137551 36.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold143 SAMTools SNP 137572 137572 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold143 SAMTools SNP 137818 137818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.051%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold143 SAMTools SNP 137836 137836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold143 SAMTools SNP 138419 138419 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold143 SAMTools SNP 138455 138455 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold143 SAMTools SNP 139030 139030 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 139084 139084 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 139585 139585 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold143 SAMTools SNP 139624 139624 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold143 SAMTools SNP 139841 139841 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold143 SAMTools SNP 140070 140070 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C62%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 140599 140599 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C22%2C36%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C6.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 140719 140719 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C2%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 141150 141150 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C14%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 141594 141594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C22%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 142032 142032 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold143 SAMTools SNP 142071 142071 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold143 SAMTools SNP 142221 142221 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 142233 142233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C19%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 142769 142769 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold143 SAMTools SNP 142775 142775 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C13%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.3%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold143 SAMTools SNP 143379 143379 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C90%2C0:99 scaffold143 SAMTools SNP 143391 143391 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C81%2C0:99 scaffold143 SAMTools SNP 143649 143649 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold143 SAMTools SNP 143679 143679 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C19%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.35%2C1.2e-14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold143 SAMTools SNP 144068 144068 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 144120 144120 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00027%2C0.00028%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold143 SAMTools SNP 144122 144122 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.67%2C0.16%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold143 SAMTools SNP 144188 144188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C33%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 144312 144312 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C27%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold143 SAMTools SNP 144358 144358 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C2%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold143 SAMTools SNP 144462 144462 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.095%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C192:99 scaffold143 SAMTools SNP 146061 146061 71.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C15%2C0:27 scaffold143 SAMTools SNP 147921 147921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C245%2C9%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 148053 148053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C69%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold143 SAMTools SNP 148483 148483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 148573 148573 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold143 SAMTools SNP 148784 148784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold143 SAMTools SNP 148838 148838 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C20%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold143 SAMTools SNP 148850 148850 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C33%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C190%2C0:99 scaffold143 SAMTools SNP 149339 149339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C45%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 151286 151286 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold143 SAMTools SNP 151644 151644 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold143 SAMTools SNP 151683 151683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C136%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 153359 153359 23.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold143 SAMTools SNP 153496 153496 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.7e-06%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C110:55 scaffold143 SAMTools SNP 153564 153564 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.1e-42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C231:42 scaffold143 SAMTools SNP 153659 153659 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold143 SAMTools SNP 154279 154279 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C4%2C27%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.57%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold143 SAMTools SNP 154299 154299 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold143 SAMTools SNP 154434 154434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold143 SAMTools SNP 158551 158551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold143 SAMTools SNP 159247 159247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold143 SAMTools SNP 159530 159530 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold143 SAMTools SNP 162031 162031 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C12%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C3.9e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold143 SAMTools SNP 162666 162666 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 162789 162789 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C59%2C2%2C46%3BMQ%3D49%3BFQ%3D222%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold143 SAMTools SNP 162801 162801 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C59%2C2%2C48%3BMQ%3D48%3BFQ%3D223%3BPV4%3D0.69%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold143 SAMTools SNP 163437 163437 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C28%3BMQ%3D13%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C217%2C0:99 scaffold143 SAMTools SNP 164342 164342 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D10%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C75%2C0:99 scaffold143 SAMTools SNP 166127 166127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C17%3BMQ%3D31%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold143 SAMTools SNP 167032 167032 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D17%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C123%2C0:99 scaffold143 SAMTools SNP 167896 167896 9.51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C69%3BMQ%3D0%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C214%2C0:60 scaffold143 SAMTools SNP 174475 174475 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 217470 217470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 217496 217496 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold143 SAMTools SNP 219571 219571 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.2%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold143 SAMTools SNP 221115 221115 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.021%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold143 SAMTools SNP 221160 221160 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold143 SAMTools SNP 221339 221339 81.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C15%2C0:27 scaffold143 SAMTools SNP 223271 223271 6.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold143 SAMTools SNP 223389 223389 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C0.0097%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C80:73 scaffold143 SAMTools SNP 223421 223421 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold143 SAMTools SNP 231289 231289 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold143 SAMTools SNP 231363 231363 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold143 SAMTools SNP 233243 233243 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.074%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold143 SAMTools SNP 239925 239925 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold143 SAMTools SNP 239943 239943 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold143 SAMTools SNP 239958 239958 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C7%2C17%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.07%2C0.073%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold143 SAMTools SNP 241374 241374 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold143 SAMTools SNP 241630 241630 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C120%2C0:99 scaffold143 SAMTools SNP 241724 241724 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C48%2C0:93 scaffold1431 SAMTools SNP 30 30 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1431 SAMTools SNP 51 51 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1431 SAMTools SNP 64 64 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1431 SAMTools SNP 69 69 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1431 SAMTools SNP 480 480 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1431 SAMTools SNP 490 490 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1431 SAMTools SNP 641 641 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1431 SAMTools SNP 657 657 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1431 SAMTools SNP 1070 1070 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1431 SAMTools SNP 1074 1074 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1431 SAMTools SNP 8362 8362 4.76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D3%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C60%2C0:42 scaffold1431 SAMTools SNP 8483 8483 9.51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C31%3BMQ%3D3%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C148%2C0:60 scaffold1431 SAMTools SNP 13598 13598 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1431 SAMTools SNP 32939 32939 10.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C15:19 scaffold1431 SAMTools SNP 80295 80295 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D10.2%3BPV4%3D1%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C37:40 scaffold1436 SAMTools SNP 1458 1458 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1436 SAMTools SNP 1489 1489 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1436 SAMTools SNP 1514 1514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1436 SAMTools SNP 2985 2985 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1436 SAMTools SNP 51490 51490 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1436 SAMTools SNP 139376 139376 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D31.8%3BPV4%3D0.4%2C0.069%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C71:62 scaffold1436 SAMTools SNP 139735 139735 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1436 SAMTools SNP 141570 141570 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1437 SAMTools SNP 7182 7182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C73%2C18%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1437 SAMTools SNP 8580 8580 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C68%2C0%2C38%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.3%2C0.013%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1437 SAMTools SNP 8951 8951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C6%2C37%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.32%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1437 SAMTools SNP 8960 8960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1437 SAMTools SNP 9056 9056 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1437 SAMTools SNP 9092 9092 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold1437 SAMTools SNP 9782 9782 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1437 SAMTools SNP 12285 12285 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1437 SAMTools SNP 12296 12296 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1437 SAMTools SNP 12307 12307 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1437 SAMTools SNP 13731 13731 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold1437 SAMTools SNP 17712 17712 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C6%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1437 SAMTools SNP 17877 17877 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1437 SAMTools SNP 19472 19472 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.076%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1437 SAMTools SNP 20325 20325 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.61%2C5.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1437 SAMTools SNP 20876 20876 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.49%2C2e-11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1437 SAMTools SNP 20962 20962 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C45%2C0:87 scaffold1437 SAMTools SNP 25435 25435 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D37%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C178:37 scaffold1437 SAMTools SNP 25461 25461 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C194:43 scaffold1437 SAMTools SNP 25620 25620 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1437 SAMTools SNP 25656 25656 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D46%3BFQ%3D33%3BPV4%3D1%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C208:63 scaffold1437 SAMTools SNP 26073 26073 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C210:54 scaffold1437 SAMTools SNP 26099 26099 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D48%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C171:99 scaffold1437 SAMTools SNP 26127 26127 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1437 SAMTools SNP 31769 31769 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1437 SAMTools SNP 31875 31875 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold1437 SAMTools SNP 32062 32062 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1437 SAMTools SNP 36654 36654 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1437 SAMTools SNP 36675 36675 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1437 SAMTools SNP 38017 38017 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1437 SAMTools SNP 38104 38104 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1437 SAMTools SNP 38530 38530 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1437 SAMTools SNP 38554 38554 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1437 SAMTools SNP 38571 38571 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1437 SAMTools SNP 38573 38573 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1437 SAMTools SNP 38629 38629 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1437 SAMTools SNP 38997 38997 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.087%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1437 SAMTools SNP 39000 39000 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1437 SAMTools SNP 39639 39639 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1437 SAMTools SNP 39667 39667 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1437 SAMTools SNP 44742 44742 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1437 SAMTools SNP 45044 45044 186 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C47%2C29%2C209%2C0%2C206:33 scaffold1437 SAMTools SNP 47034 47034 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1437 SAMTools SNP 47331 47331 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1437 SAMTools SNP 47822 47822 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.17%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C158:99 scaffold1437 SAMTools SNP 47831 47831 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.17%2C0.086%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C158:99 scaffold1437 SAMTools SNP 48434 48434 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1437 SAMTools SNP 48500 48500 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1437 SAMTools SNP 48801 48801 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D33%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1437 SAMTools SNP 48998 48998 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1437 SAMTools SNP 49020 49020 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1437 SAMTools SNP 49070 49070 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold1437 SAMTools SNP 49088 49088 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C2%3BMQ%3D39%3BFQ%3D42%3BPV4%3D0.47%2C0.38%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C166:72 scaffold1437 SAMTools SNP 49127 49127 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C2%3BMQ%3D37%3BFQ%3D40%3BPV4%3D0.48%2C0.4%2C3.4e-05%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C192:70 scaffold1437 SAMTools SNP 49332 49332 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C6%3BMQ%3D43%3BFQ%3D137%3BPV4%3D0.2%2C0.044%2C0.0091%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1437 SAMTools SNP 49571 49571 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold1437 SAMTools SNP 49727 49727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1437 SAMTools SNP 51015 51015 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C27%2C0:51 scaffold1437 SAMTools SNP 53635 53635 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.31%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1437 SAMTools SNP 53754 53754 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.0003%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold1437 SAMTools SNP 68307 68307 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C3.8e-14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C235:63 scaffold1437 SAMTools SNP 68841 68841 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.067%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C76:42 scaffold1439 SAMTools SNP 1977 1977 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C152:47 scaffold1439 SAMTools SNP 2011 2011 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C36%2C0:65 scaffold1439 SAMTools SNP 92595 92595 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold144 SAMTools SNP 66361 66361 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold144 SAMTools SNP 83367 83367 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 83404 83404 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C221:41 scaffold144 SAMTools SNP 84079 84079 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C21%2C0:39 scaffold144 SAMTools SNP 84081 84081 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C214:91 scaffold144 SAMTools SNP 84508 84508 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold144 SAMTools SNP 85042 85042 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D48%3BFQ%3D15.1%3BPV4%3D1%2C1.4e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold144 SAMTools SNP 110818 110818 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C75%2C0:99 scaffold144 SAMTools SNP 111533 111533 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C15%2C0:27 scaffold144 SAMTools SNP 111616 111616 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold144 SAMTools SNP 111782 111782 86.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold144 SAMTools SNP 114284 114284 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold144 SAMTools SNP 114314 114314 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold144 SAMTools SNP 115295 115295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold144 SAMTools SNP 115311 115311 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold144 SAMTools SNP 116421 116421 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold144 SAMTools SNP 116428 116428 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold144 SAMTools SNP 116523 116523 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold144 SAMTools SNP 119156 119156 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold144 SAMTools SNP 119435 119435 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 120195 120195 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 127302 127302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 130045 130045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C6%2C10%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.75%2C0.091%2C0.25%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 131128 131128 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D38%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C36%2C0:69 scaffold144 SAMTools SNP 131912 131912 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D37%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C33%2C0:63 scaffold144 SAMTools SNP 133289 133289 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C66%2C0:99 scaffold144 SAMTools SNP 138577 138577 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C242:99 scaffold144 SAMTools SNP 138602 138602 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 138860 138860 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C63%2C98%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-22%2C1.9e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 138981 138981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C107%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.2e-15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 138988 138988 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C255%2C0:99 scaffold144 SAMTools SNP 139116 139116 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D63%2C15%2C44%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.065%2C3e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold144 SAMTools SNP 139118 139118 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C15%2C60%2C10%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C138:95 scaffold144 SAMTools SNP 139359 139359 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C6%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold144 SAMTools SNP 140031 140031 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C4.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C226:99 scaffold144 SAMTools SNP 140184 140184 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold144 SAMTools SNP 141140 141140 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold144 SAMTools SNP 141349 141349 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold144 SAMTools SNP 141481 141481 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold144 SAMTools SNP 147556 147556 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D37%3BFQ%3D46%3BPV4%3D1%2C0.024%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C73:76 scaffold144 SAMTools SNP 148383 148383 59.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold144 SAMTools SNP 149633 149633 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C0%3BMQ%3D46%3BFQ%3D151%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C178:99 scaffold144 SAMTools SNP 150845 150845 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.49%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold144 SAMTools SNP 151973 151973 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C3%2C5%3BMQ%3D46%3BFQ%3D65%3BPV4%3D0.12%2C1%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C247:95 scaffold144 SAMTools SNP 167288 167288 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold144 SAMTools SNP 167318 167318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 167902 167902 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold144 SAMTools SNP 168403 168403 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold144 SAMTools SNP 168413 168413 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold144 SAMTools SNP 168511 168511 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D35%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C36%2C0:69 scaffold144 SAMTools SNP 175727 175727 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 175748 175748 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold144 SAMTools SNP 176208 176208 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 176220 176220 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.094%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold144 SAMTools SNP 176274 176274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold144 SAMTools SNP 177249 177249 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 178155 178155 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold144 SAMTools SNP 178445 178445 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold144 SAMTools SNP 178475 178475 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold144 SAMTools SNP 178578 178578 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 178581 178581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 180798 180798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold144 SAMTools SNP 181074 181074 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold144 SAMTools SNP 184263 184263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold144 SAMTools SNP 185061 185061 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 190403 190403 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold144 SAMTools SNP 190866 190866 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold144 SAMTools SNP 199554 199554 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D0.25%2C0.009%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold144 SAMTools SNP 199769 199769 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold144 SAMTools SNP 200616 200616 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 209978 209978 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 210069 210069 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold144 SAMTools SNP 210826 210826 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold144 SAMTools SNP 211405 211405 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold144 SAMTools SNP 211870 211870 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.07%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold144 SAMTools SNP 212069 212069 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold144 SAMTools SNP 212120 212120 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold144 SAMTools SNP 212439 212439 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold144 SAMTools SNP 212607 212607 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold144 SAMTools SNP 212621 212621 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C107:99 scaffold144 SAMTools SNP 213503 213503 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold144 SAMTools SNP 213551 213551 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.054%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C79:52 scaffold144 SAMTools SNP 213559 213559 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C38:41 scaffold144 SAMTools SNP 213861 213861 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold144 SAMTools SNP 214141 214141 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold144 SAMTools SNP 214328 214328 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold144 SAMTools SNP 214714 214714 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold144 SAMTools SNP 224118 224118 64.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold144 SAMTools SNP 224126 224126 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 224755 224755 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold144 SAMTools SNP 224782 224782 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold144 SAMTools SNP 228131 228131 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 229593 229593 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold144 SAMTools SNP 270304 270304 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.62%2C5.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold144 SAMTools SNP 270355 270355 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C54%2C0:99 scaffold144 SAMTools SNP 270400 270400 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.56%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold144 SAMTools SNP 270445 270445 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.25%2C5.3e-09%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold144 SAMTools SNP 297629 297629 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 297784 297784 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 298161 298161 137 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C26%2C8%2C161%2C0%2C158:33 scaffold144 SAMTools SNP 299261 299261 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold144 SAMTools SNP 300293 300293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold144 SAMTools SNP 305709 305709 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold144 SAMTools SNP 310835 310835 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold144 SAMTools SNP 313335 313335 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold144 SAMTools SNP 315518 315518 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 316911 316911 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 318116 318116 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold144 SAMTools SNP 318201 318201 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold144 SAMTools SNP 325179 325179 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold144 SAMTools SNP 334486 334486 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C7%2C24%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.21%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold144 SAMTools SNP 335005 335005 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold144 SAMTools SNP 336176 336176 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold144 SAMTools SNP 336218 336218 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold144 SAMTools SNP 339922 339922 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold144 SAMTools SNP 339963 339963 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C211:99 scaffold144 SAMTools SNP 340218 340218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.25%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 341449 341449 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold144 SAMTools SNP 341583 341583 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C123:80 scaffold144 SAMTools SNP 344641 344641 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold144 SAMTools SNP 344662 344662 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 370365 370365 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 370368 370368 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 370472 370472 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 397596 397596 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C179%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C255%2C0:99 scaffold144 SAMTools SNP 397615 397615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold144 SAMTools SNP 398535 398535 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 398604 398604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 398663 398663 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C58%2C100%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 398694 398694 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D880%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D621%2C46%2C165%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-05%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 398704 398704 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D952%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D686%2C42%2C183%2C37%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1.3e-06%2C9.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold144 SAMTools SNP 400134 400134 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D799%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D69%2C12%2C676%2C41%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D0.0072%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold144 SAMTools SNP 400158 400158 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C77%2C584%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 406936 406936 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold144 SAMTools SNP 427988 427988 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C21%2C0:39 scaffold144 SAMTools SNP 428791 428791 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold144 SAMTools SNP 429238 429238 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.42%3BPV4%3D1%2C1.4e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C35:38 scaffold144 SAMTools SNP 430047 430047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold144 SAMTools SNP 433693 433693 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 435567 435567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C12%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 435588 435588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 436591 436591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C22%2C59%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 440895 440895 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C98:33 scaffold144 SAMTools SNP 441714 441714 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C0.011%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C160:37 scaffold144 SAMTools SNP 441964 441964 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C160:66 scaffold144 SAMTools SNP 442126 442126 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D27.8%3BPV4%3D0.18%2C7e-11%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C67:58 scaffold144 SAMTools SNP 442815 442815 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C156:84 scaffold144 SAMTools SNP 442873 442873 9.97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold144 SAMTools SNP 443633 443633 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold144 SAMTools SNP 445431 445431 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold144 SAMTools SNP 445510 445510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold144 SAMTools SNP 445543 445543 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold144 SAMTools SNP 446747 446747 74.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold144 SAMTools SNP 633617 633617 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold144 SAMTools SNP 648205 648205 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C45%2C0:86 scaffold144 SAMTools SNP 648253 648253 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C197:30 scaffold144 SAMTools SNP 649865 649865 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold144 SAMTools SNP 649874 649874 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C48%2C0:93 scaffold144 SAMTools SNP 650010 650010 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C132%2C0:99 scaffold144 SAMTools SNP 650337 650337 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold144 SAMTools SNP 650651 650651 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C60%2C0:99 scaffold144 SAMTools SNP 650916 650916 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C27%2C0:51 scaffold144 SAMTools SNP 650928 650928 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C0:75 scaffold144 SAMTools SNP 651342 651342 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold144 SAMTools SNP 670095 670095 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 670131 670131 42.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold144 SAMTools SNP 671985 671985 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold144 SAMTools SNP 673128 673128 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C7.6e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C74:54 scaffold144 SAMTools SNP 673401 673401 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold144 SAMTools SNP 673899 673899 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold144 SAMTools SNP 675387 675387 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 675586 675586 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 675895 675895 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.029%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold144 SAMTools SNP 676994 676994 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold144 SAMTools SNP 682845 682845 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold144 SAMTools SNP 683160 683160 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 684518 684518 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold144 SAMTools SNP 705529 705529 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold144 SAMTools SNP 708415 708415 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C5%3BMQ%3D49%3BFQ%3D187%3BPV4%3D0.21%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C240:99 scaffold144 SAMTools SNP 708441 708441 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C6%2C4%3BMQ%3D48%3BFQ%3D211%3BPV4%3D0.0042%2C0.44%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold144 SAMTools SNP 709140 709140 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.29%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold144 SAMTools SNP 709143 709143 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C9.1e-06%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold144 SAMTools SNP 709179 709179 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 710770 710770 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold144 SAMTools SNP 711050 711050 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.14%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold144 SAMTools SNP 711052 711052 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.38%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold144 SAMTools SNP 711061 711061 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.23%2C0.015%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold144 SAMTools SNP 711086 711086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C9%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.012%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold144 SAMTools SNP 712266 712266 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold144 SAMTools SNP 712299 712299 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D3e-07%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C245:65 scaffold144 SAMTools SNP 712724 712724 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold144 SAMTools SNP 716786 716786 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold144 SAMTools SNP 738498 738498 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold144 SAMTools SNP 738548 738548 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.48%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C154:33 scaffold144 SAMTools SNP 738738 738738 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C249:37 scaffold144 SAMTools SNP 739644 739644 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.018%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold144 SAMTools SNP 739649 739649 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold144 SAMTools SNP 739651 739651 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold144 SAMTools SNP 739893 739893 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C40%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold144 SAMTools SNP 740440 740440 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.17%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C158:55 scaffold144 SAMTools SNP 740870 740870 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C39:42 scaffold144 SAMTools SNP 741612 741612 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold144 SAMTools SNP 741643 741643 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C27%2C0:51 scaffold144 SAMTools SNP 742084 742084 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D45%3BFQ%3D14.2%3BPV4%3D0.5%2C0.069%2C0.26%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C206:43 scaffold144 SAMTools SNP 742699 742699 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.44%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C224:69 scaffold144 SAMTools SNP 742731 742731 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C5%3BMQ%3D47%3BFQ%3D110%3BPV4%3D0.029%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold144 SAMTools SNP 742744 742744 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.21%2C0.24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold144 SAMTools SNP 744339 744339 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold144 SAMTools SNP 746362 746362 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C150:99 scaffold144 SAMTools SNP 747357 747357 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold144 SAMTools SNP 747596 747596 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold144 SAMTools SNP 748902 748902 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1440 SAMTools SNP 1133 1133 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1440 SAMTools SNP 1170 1170 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1440 SAMTools SNP 1212 1212 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1440 SAMTools SNP 1590 1590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1440 SAMTools SNP 1695 1695 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C15%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.29%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1440 SAMTools SNP 2024 2024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1440 SAMTools SNP 2045 2045 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1440 SAMTools SNP 28684 28684 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1440 SAMTools SNP 58341 58341 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1440 SAMTools SNP 59445 59445 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1440 SAMTools SNP 65060 65060 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1440 SAMTools SNP 164288 164288 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1440 SAMTools SNP 164296 164296 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1440 SAMTools SNP 166448 166448 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1440 SAMTools SNP 168254 168254 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1440 SAMTools SNP 183921 183921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1440 SAMTools SNP 183937 183937 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C32:35 scaffold1440 SAMTools SNP 183951 183951 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1440 SAMTools SNP 184169 184169 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C144:39 scaffold1440 SAMTools SNP 184255 184255 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1440 SAMTools SNP 191329 191329 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1440 SAMTools SNP 191372 191372 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1440 SAMTools SNP 191554 191554 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D42%3BFQ%3D58%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C85:88 scaffold1440 SAMTools SNP 191637 191637 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C0.25%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C35:38 scaffold1440 SAMTools SNP 191641 191641 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold1440 SAMTools SNP 193353 193353 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1442 SAMTools SNP 14167 14167 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 14255 14255 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 14268 14268 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 17375 17375 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 19041 19041 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1442 SAMTools SNP 32874 32874 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1442 SAMTools SNP 33291 33291 34.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1442 SAMTools SNP 33435 33435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1442 SAMTools SNP 34344 34344 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1442 SAMTools SNP 34935 34935 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 43056 43056 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1442 SAMTools SNP 72057 72057 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1445 SAMTools SNP 8209 8209 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1445 SAMTools SNP 8299 8299 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 76685 76685 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1445 SAMTools SNP 78388 78388 107 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C57%2C0%2C141%2C45%2C138:99 scaffold1445 SAMTools SNP 78571 78571 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C126%2C457%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.22%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1445 SAMTools SNP 78586 78586 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D625%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C203%2C64%2C266%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.47%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1445 SAMTools SNP 78801 78801 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C57%2C0:99 scaffold1445 SAMTools SNP 83717 83717 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1445 SAMTools SNP 83727 83727 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 83789 83789 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1445 SAMTools SNP 84210 84210 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1445 SAMTools SNP 87512 87512 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 87520 87520 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1445 SAMTools SNP 89087 89087 60.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C86%2C80%2C94%2C0%2C88:10 scaffold1445 SAMTools SNP 89188 89188 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1445 SAMTools SNP 100059 100059 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 100079 100079 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 104878 104878 23 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1445 SAMTools SNP 104983 104983 66.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C15%2C0:27 scaffold1445 SAMTools SNP 105007 105007 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C81%2C0:99 scaffold1445 SAMTools SNP 105013 105013 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00053%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C222:28 scaffold1445 SAMTools SNP 105790 105790 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.55%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1445 SAMTools SNP 118770 118770 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1445 SAMTools SNP 119411 119411 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1445 SAMTools SNP 121939 121939 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 122879 122879 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1445 SAMTools SNP 123303 123303 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1445 SAMTools SNP 123354 123354 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 123654 123654 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 123696 123696 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1445 SAMTools SNP 124197 124197 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1445 SAMTools SNP 124464 124464 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1445 SAMTools SNP 124887 124887 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1445 SAMTools SNP 124953 124953 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 125016 125016 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1445 SAMTools SNP 125187 125187 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1445 SAMTools SNP 125202 125202 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1445 SAMTools SNP 125415 125415 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.52%2C0.3%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C207:99 scaffold1445 SAMTools SNP 125439 125439 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C110:45 scaffold1445 SAMTools SNP 125469 125469 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C0.28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1445 SAMTools SNP 125830 125830 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1445 SAMTools SNP 127508 127508 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1445 SAMTools SNP 127572 127572 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1445 SAMTools SNP 127972 127972 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold1445 SAMTools SNP 131068 131068 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0079%2C0.0096%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C147:82 scaffold1445 SAMTools SNP 131076 131076 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C170:84 scaffold1445 SAMTools SNP 131596 131596 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1445 SAMTools SNP 134143 134143 55.8 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1445 SAMTools SNP 135267 135267 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C10%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.11%2C2.2e-16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1445 SAMTools SNP 135450 135450 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.022%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1445 SAMTools SNP 135478 135478 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C231:58 scaffold1445 SAMTools SNP 136336 136336 42.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C21%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C19%2C0:35 scaffold1445 SAMTools SNP 136503 136503 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C16%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.75%2C1.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1445 SAMTools SNP 137413 137413 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1445 SAMTools SNP 137415 137415 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1445 SAMTools SNP 138504 138504 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.47%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1445 SAMTools SNP 138519 138519 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1445 SAMTools SNP 144815 144815 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1445 SAMTools SNP 178439 178439 14.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C1%2C0:4 scaffold1445 SAMTools SNP 215600 215600 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1445 SAMTools SNP 215639 215639 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1447 SAMTools SNP 53442 53442 14.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold1447 SAMTools SNP 53581 53581 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C24%2C0:45 scaffold1447 SAMTools SNP 65048 65048 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 65049 65049 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 99054 99054 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1447 SAMTools SNP 99079 99079 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1447 SAMTools SNP 105864 105864 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1447 SAMTools SNP 106291 106291 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1447 SAMTools SNP 106317 106317 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 155049 155049 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1447 SAMTools SNP 160806 160806 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.052%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1447 SAMTools SNP 160872 160872 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1447 SAMTools SNP 160944 160944 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D69.2%3BPV4%3D1%2C1.9e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C104:99 scaffold1447 SAMTools SNP 163640 163640 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1447 SAMTools SNP 166457 166457 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C132:99 scaffold1447 SAMTools SNP 166583 166583 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C33%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00011%2C5.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1447 SAMTools SNP 166629 166629 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1447 SAMTools SNP 166640 166640 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1447 SAMTools SNP 167044 167044 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.033%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold1447 SAMTools SNP 167071 167071 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1447 SAMTools SNP 167086 167086 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1447 SAMTools SNP 168064 168064 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C4%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1447 SAMTools SNP 168139 168139 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C31%2C1%2C16%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0068%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1447 SAMTools SNP 168169 168169 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1447 SAMTools SNP 168175 168175 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 169332 169332 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold1447 SAMTools SNP 169356 169356 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C240:42 scaffold1447 SAMTools SNP 170295 170295 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1447 SAMTools SNP 170479 170479 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold1447 SAMTools SNP 170482 170482 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1447 SAMTools SNP 170503 170503 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1447 SAMTools SNP 175126 175126 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1447 SAMTools SNP 175162 175162 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1447 SAMTools SNP 178543 178543 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1447 SAMTools SNP 179597 179597 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.48%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1447 SAMTools SNP 183421 183421 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.15%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C77:80 scaffold1447 SAMTools SNP 183435 183435 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold1447 SAMTools SNP 183443 183443 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1447 SAMTools SNP 183981 183981 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.45%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1447 SAMTools SNP 184026 184026 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 184050 184050 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1447 SAMTools SNP 184648 184648 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1447 SAMTools SNP 198033 198033 87.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold1447 SAMTools SNP 205137 205137 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C42%2C0:81 scaffold1447 SAMTools SNP 205248 205248 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.16%2C1.6e-28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C240:52 scaffold1447 SAMTools SNP 205314 205314 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1447 SAMTools SNP 205681 205681 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.3%2C1.8e-05%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1447 SAMTools SNP 205696 205696 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.11%2C4.5e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1447 SAMTools SNP 205791 205791 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C192:99 scaffold1447 SAMTools SNP 206010 206010 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C3%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.013%2C1.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1447 SAMTools SNP 206091 206091 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D13%3BPV4%3D1%2C0.0048%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C40:43 scaffold1447 SAMTools SNP 206310 206310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1447 SAMTools SNP 206723 206723 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold1447 SAMTools SNP 207273 207273 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 207359 207359 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 238001 238001 90.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C15%2C0:27 scaffold1447 SAMTools SNP 243602 243602 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1447 SAMTools SNP 252675 252675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C16%3BMQ%3D45%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1447 SAMTools SNP 254403 254403 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C28%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 255133 255133 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C9%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.41%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1447 SAMTools SNP 255150 255150 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C6%3BMQ%3D49%3BFQ%3D118%3BPV4%3D0.54%2C0.39%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1447 SAMTools SNP 255175 255175 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C6%3BMQ%3D49%3BFQ%3D33%3BPV4%3D1%2C0.00011%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C222:63 scaffold1447 SAMTools SNP 255543 255543 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C28%3BMQ%3D49%3BFQ%3D139%3BPV4%3D1%2C0.12%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C166:99 scaffold1447 SAMTools SNP 255560 255560 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C242:99 scaffold1447 SAMTools SNP 256314 256314 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 256317 256317 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 257014 257014 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C12%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D0.39%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C62%2C0:99 scaffold1447 SAMTools SNP 258179 258179 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1447 SAMTools SNP 262145 262145 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1447 SAMTools SNP 264504 264504 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.002%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1447 SAMTools SNP 267923 267923 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 269115 269115 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C2%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 269131 269131 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C25%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1447 SAMTools SNP 270418 270418 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C16%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.62%2C2.4e-20%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1447 SAMTools SNP 270963 270963 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C152:99 scaffold1447 SAMTools SNP 270972 270972 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1447 SAMTools SNP 271470 271470 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1447 SAMTools SNP 271879 271879 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.39%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1447 SAMTools SNP 273139 273139 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1447 SAMTools SNP 275128 275128 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.6e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1447 SAMTools SNP 275269 275269 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00023%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1447 SAMTools SNP 275985 275985 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C76%2C0%2C46%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C4.3e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1447 SAMTools SNP 275991 275991 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C66%2C0%2C31%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.8e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C254:52 scaffold1447 SAMTools SNP 285367 285367 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1447 SAMTools SNP 293274 293274 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1447 SAMTools SNP 298797 298797 4.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1447 SAMTools SNP 299349 299349 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C30%2C0:57 scaffold1447 SAMTools SNP 299428 299428 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1447 SAMTools SNP 299537 299537 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C96%2C0:99 scaffold1447 SAMTools SNP 300015 300015 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1447 SAMTools SNP 301615 301615 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C12%2C147%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 306142 306142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C20%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1447 SAMTools SNP 307756 307756 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C79%2C17%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 307825 307825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C49%2C32%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00094%2C0.32%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 308676 308676 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C14%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 309211 309211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C26%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1447 SAMTools SNP 313336 313336 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1447 SAMTools SNP 314724 314724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.00024%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1447 SAMTools SNP 316696 316696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1447 SAMTools SNP 316872 316872 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1447 SAMTools SNP 320743 320743 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1447 SAMTools SNP 323120 323120 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1447 SAMTools SNP 326168 326168 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1447 SAMTools SNP 327373 327373 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1447 SAMTools SNP 327477 327477 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1448 SAMTools SNP 617 617 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1448 SAMTools SNP 618 618 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1448 SAMTools SNP 14438 14438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1448 SAMTools SNP 14529 14529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D547%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D200%2C106%2C42%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1448 SAMTools SNP 15515 15515 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1448 SAMTools SNP 18944 18944 6.95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1448 SAMTools SNP 24868 24868 38.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold1448 SAMTools SNP 24896 24896 41.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold1448 SAMTools SNP 25036 25036 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1448 SAMTools SNP 29297 29297 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold1448 SAMTools SNP 208502 208502 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1448 SAMTools SNP 225670 225670 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1448 SAMTools SNP 225820 225820 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1448 SAMTools SNP 268628 268628 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1448 SAMTools SNP 270265 270265 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.048%2C0.09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1448 SAMTools SNP 270441 270441 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0096%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1448 SAMTools SNP 270910 270910 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C247:92 scaffold1448 SAMTools SNP 271015 271015 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1448 SAMTools SNP 271114 271114 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.45%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C172:31 scaffold1448 SAMTools SNP 271790 271790 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 2537 2537 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1449 SAMTools SNP 6061 6061 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.59%2C1%2C1%2C7.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1449 SAMTools SNP 10503 10503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C16%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold1449 SAMTools SNP 11409 11409 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1449 SAMTools SNP 11974 11974 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 51379 51379 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1449 SAMTools SNP 69293 69293 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 129308 129308 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1449 SAMTools SNP 129315 129315 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1449 SAMTools SNP 161491 161491 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1449 SAMTools SNP 164346 164346 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1449 SAMTools SNP 164499 164499 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 181856 181856 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1449 SAMTools SNP 185039 185039 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 185234 185234 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1449 SAMTools SNP 200495 200495 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1449 SAMTools SNP 200828 200828 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1449 SAMTools SNP 200945 200945 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1449 SAMTools SNP 215680 215680 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold145 SAMTools SNP 3788 3788 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 3805 3805 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 3924 3924 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 21432 21432 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 28520 28520 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 32383 32383 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.25%2C2.8e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C177:54 scaffold145 SAMTools SNP 32632 32632 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.46%2C2.8e-08%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C76:61 scaffold145 SAMTools SNP 32798 32798 12.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold145 SAMTools SNP 33103 33103 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold145 SAMTools SNP 33128 33128 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.48%2C0.4%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold145 SAMTools SNP 33250 33250 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold145 SAMTools SNP 33261 33261 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold145 SAMTools SNP 41059 41059 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold145 SAMTools SNP 43400 43400 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 43418 43418 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C4.5e-05%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C156:88 scaffold145 SAMTools SNP 43526 43526 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold145 SAMTools SNP 48121 48121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold145 SAMTools SNP 48160 48160 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C254:99 scaffold145 SAMTools SNP 50129 50129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C3%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.33%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 50532 50532 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold145 SAMTools SNP 55492 55492 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C127:99 scaffold145 SAMTools SNP 55561 55561 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.00016%2C1%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold145 SAMTools SNP 55564 55564 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.00016%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold145 SAMTools SNP 57056 57056 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold145 SAMTools SNP 57065 57065 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.015%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C234:99 scaffold145 SAMTools SNP 57086 57086 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold145 SAMTools SNP 57089 57089 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold145 SAMTools SNP 58688 58688 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold145 SAMTools SNP 60642 60642 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold145 SAMTools SNP 61309 61309 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold145 SAMTools SNP 61332 61332 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 63567 63567 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C5%3BMQ%3D33%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C67:70 scaffold145 SAMTools SNP 63598 63598 12.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D21%3BFQ%3D-29%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C2%2C0:4 scaffold145 SAMTools SNP 77749 77749 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 80422 80422 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 80458 80458 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 80537 80537 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold145 SAMTools SNP 80977 80977 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold145 SAMTools SNP 80992 80992 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold145 SAMTools SNP 81574 81574 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold145 SAMTools SNP 83241 83241 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 135060 135060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold145 SAMTools SNP 142052 142052 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold145 SAMTools SNP 142191 142191 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 145873 145873 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C219:99 scaffold145 SAMTools SNP 145888 145888 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C214:99 scaffold145 SAMTools SNP 148595 148595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D45%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold145 SAMTools SNP 148718 148718 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D46%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C72%2C0:99 scaffold145 SAMTools SNP 148777 148777 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C13%2C1%3BMQ%3D49%3BFQ%3D79%3BPV4%3D0.52%2C1%2C1%2C1.5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold145 SAMTools SNP 148814 148814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold145 SAMTools SNP 148820 148820 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.015%2C0.00049%2C0.0014%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold145 SAMTools SNP 149544 149544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C17%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold145 SAMTools SNP 149604 149604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold145 SAMTools SNP 151847 151847 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold145 SAMTools SNP 153567 153567 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold145 SAMTools SNP 164578 164578 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold145 SAMTools SNP 164691 164691 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold145 SAMTools SNP 164692 164692 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold145 SAMTools SNP 184316 184316 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold145 SAMTools SNP 184331 184331 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold145 SAMTools SNP 184377 184377 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold145 SAMTools SNP 184407 184407 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 187128 187128 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold145 SAMTools SNP 192967 192967 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold145 SAMTools SNP 193003 193003 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold145 SAMTools SNP 193810 193810 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.54%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold145 SAMTools SNP 193957 193957 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.28%2C2.8e-17%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C175:99 scaffold145 SAMTools SNP 193987 193987 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.22%2C5.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C214:85 scaffold145 SAMTools SNP 194098 194098 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C1:75 scaffold145 SAMTools SNP 194107 194107 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold145 SAMTools SNP 196701 196701 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.18%2C1.1e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C210:33 scaffold145 SAMTools SNP 197526 197526 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold145 SAMTools SNP 198255 198255 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C69%2C15%2C80%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C2.7e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold145 SAMTools SNP 202552 202552 72.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold145 SAMTools SNP 202584 202584 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 208740 208740 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.24%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold145 SAMTools SNP 208929 208929 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold145 SAMTools SNP 208965 208965 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.4%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C252:99 scaffold145 SAMTools SNP 209360 209360 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 210327 210327 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0046%2C0.00061%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold145 SAMTools SNP 210890 210890 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C16%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold145 SAMTools SNP 215652 215652 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold145 SAMTools SNP 307303 307303 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 307304 307304 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold145 SAMTools SNP 307345 307345 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 307827 307827 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C220:69 scaffold145 SAMTools SNP 310247 310247 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold145 SAMTools SNP 310631 310631 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold145 SAMTools SNP 310658 310658 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C15%2C0:27 scaffold145 SAMTools SNP 311759 311759 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D48%3BFQ%3D37%3BPV4%3D1%2C0.00023%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C242:67 scaffold145 SAMTools SNP 311817 311817 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold145 SAMTools SNP 312393 312393 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold145 SAMTools SNP 312399 312399 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold145 SAMTools SNP 317382 317382 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.37%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C93:96 scaffold145 SAMTools SNP 319750 319750 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.076%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold145 SAMTools SNP 320139 320139 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold145 SAMTools SNP 320228 320228 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold145 SAMTools SNP 320607 320607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold145 SAMTools SNP 320621 320621 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.58%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold145 SAMTools SNP 320634 320634 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold145 SAMTools SNP 321813 321813 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0026%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold145 SAMTools SNP 322460 322460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold145 SAMTools SNP 327271 327271 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold145 SAMTools SNP 331564 331564 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold145 SAMTools SNP 331635 331635 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.57%2C0.026%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold145 SAMTools SNP 331682 331682 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 341191 341191 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00025%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C162:30 scaffold145 SAMTools SNP 348591 348591 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold145 SAMTools SNP 349342 349342 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold145 SAMTools SNP 349615 349615 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold145 SAMTools SNP 349648 349648 74.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold145 SAMTools SNP 354680 354680 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold145 SAMTools SNP 354713 354713 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold145 SAMTools SNP 354716 354716 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold145 SAMTools SNP 355149 355149 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold145 SAMTools SNP 355188 355188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold145 SAMTools SNP 355191 355191 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 355638 355638 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C1%2C18%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold145 SAMTools SNP 367188 367188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.052%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold145 SAMTools SNP 369609 369609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold145 SAMTools SNP 371227 371227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold145 SAMTools SNP 371732 371732 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold145 SAMTools SNP 372565 372565 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.025%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold145 SAMTools SNP 372944 372944 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold145 SAMTools SNP 373339 373339 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold145 SAMTools SNP 374308 374308 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold145 SAMTools SNP 374482 374482 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold145 SAMTools SNP 375534 375534 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold145 SAMTools SNP 375558 375558 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 383284 383284 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold145 SAMTools SNP 383288 383288 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.072%2C0.0041%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold145 SAMTools SNP 383305 383305 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C2%2C12%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.61%2C0.033%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold145 SAMTools SNP 383858 383858 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold145 SAMTools SNP 383897 383897 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold145 SAMTools SNP 383918 383918 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold145 SAMTools SNP 383924 383924 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold145 SAMTools SNP 384192 384192 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold145 SAMTools SNP 384668 384668 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 384706 384706 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold145 SAMTools SNP 384710 384710 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold145 SAMTools SNP 384755 384755 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold145 SAMTools SNP 385448 385448 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold145 SAMTools SNP 385508 385508 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold145 SAMTools SNP 386133 386133 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold145 SAMTools SNP 386134 386134 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold145 SAMTools SNP 387413 387413 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.63%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold145 SAMTools SNP 387473 387473 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C0.24%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold145 SAMTools SNP 388119 388119 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C12%2C6%3BMQ%3D23%3BFQ%3D84.9%3BPV4%3D0.15%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C112:99 scaffold145 SAMTools SNP 388176 388176 4.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C14%2C13%2C9%3BMQ%3D8%3BFQ%3D-34%3BPV4%3D0.027%2C0.27%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C7%2C0:6 scaffold145 SAMTools SNP 394532 394532 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold145 SAMTools SNP 394661 394661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold145 SAMTools SNP 395382 395382 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold145 SAMTools SNP 395587 395587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold145 SAMTools SNP 396039 396039 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.2%2C0.056%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C212:59 scaffold145 SAMTools SNP 396060 396060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold145 SAMTools SNP 397376 397376 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold145 SAMTools SNP 397667 397667 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.63%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold145 SAMTools SNP 397679 397679 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.19%2C0.35%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold145 SAMTools SNP 398754 398754 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold145 SAMTools SNP 398823 398823 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C13%2C46%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C9.5e-16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 398844 398844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold145 SAMTools SNP 401387 401387 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold145 SAMTools SNP 402015 402015 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D42%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold145 SAMTools SNP 406404 406404 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold145 SAMTools SNP 409625 409625 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.4%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold145 SAMTools SNP 413118 413118 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold145 SAMTools SNP 413144 413144 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold145 SAMTools SNP 417892 417892 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0085%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold145 SAMTools SNP 417976 417976 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold145 SAMTools SNP 418009 418009 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.61%2C0.48%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold145 SAMTools SNP 418036 418036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold145 SAMTools SNP 420062 420062 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 420064 420064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C1%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 420116 420116 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold145 SAMTools SNP 421464 421464 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold145 SAMTools SNP 421504 421504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold145 SAMTools SNP 421513 421513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold145 SAMTools SNP 421534 421534 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold145 SAMTools SNP 422782 422782 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C216:99 scaffold145 SAMTools SNP 422797 422797 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0013%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold145 SAMTools SNP 425224 425224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold145 SAMTools SNP 425231 425231 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold145 SAMTools SNP 425257 425257 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C55%2C7%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.43%2C0.42%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold145 SAMTools SNP 425639 425639 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C73%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold145 SAMTools SNP 425684 425684 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C71%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold145 SAMTools SNP 426193 426193 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold145 SAMTools SNP 426202 426202 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.00065%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 429219 429219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 429229 429229 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D4.9e-05%2C1.4e-11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold145 SAMTools SNP 429279 429279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold145 SAMTools SNP 429498 429498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold145 SAMTools SNP 434959 434959 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D26%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C54%2C0:99 scaffold145 SAMTools SNP 439099 439099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C48%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold145 SAMTools SNP 449887 449887 12.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold145 SAMTools SNP 452774 452774 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold145 SAMTools SNP 454067 454067 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold145 SAMTools SNP 457598 457598 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold145 SAMTools SNP 475776 475776 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.018%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C142:49 scaffold145 SAMTools SNP 514817 514817 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold145 SAMTools SNP 514832 514832 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold145 SAMTools SNP 541466 541466 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 543342 543342 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold145 SAMTools SNP 543355 543355 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold145 SAMTools SNP 546519 546519 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C78%2C0:99 scaffold145 SAMTools SNP 546780 546780 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C84%2C0:99 scaffold145 SAMTools SNP 624238 624238 10.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold145 SAMTools SNP 682640 682640 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C6.2e-06%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C218:77 scaffold145 SAMTools SNP 682847 682847 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C2%2C7%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold145 SAMTools SNP 683055 683055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C24%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold145 SAMTools SNP 683079 683079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 683233 683233 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C1%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold145 SAMTools SNP 683416 683416 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.055%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold145 SAMTools SNP 683430 683430 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold145 SAMTools SNP 705960 705960 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold145 SAMTools SNP 710575 710575 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold145 SAMTools SNP 811892 811892 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 817847 817847 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold145 SAMTools SNP 817874 817874 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold145 SAMTools SNP 824534 824534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold145 SAMTools SNP 824567 824567 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 826554 826554 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.29%2C0.0056%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold145 SAMTools SNP 829122 829122 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold145 SAMTools SNP 834563 834563 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.0008%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold145 SAMTools SNP 836759 836759 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.12%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold145 SAMTools SNP 836765 836765 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.52%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold145 SAMTools SNP 837896 837896 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold145 SAMTools SNP 839056 839056 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 845570 845570 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold145 SAMTools SNP 850358 850358 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.37%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold145 SAMTools SNP 851879 851879 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.31%2C0.0023%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold145 SAMTools SNP 853099 853099 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold145 SAMTools SNP 853334 853334 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold145 SAMTools SNP 853349 853349 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold145 SAMTools SNP 853409 853409 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.09%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C224:99 scaffold145 SAMTools SNP 853737 853737 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold145 SAMTools SNP 854401 854401 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold145 SAMTools SNP 854485 854485 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C16%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.09%2C4e-20%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold145 SAMTools SNP 855216 855216 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.27%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold145 SAMTools SNP 855359 855359 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C0.088%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold145 SAMTools SNP 855728 855728 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold145 SAMTools SNP 855740 855740 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold145 SAMTools SNP 855898 855898 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold145 SAMTools SNP 855987 855987 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C165:36 scaffold145 SAMTools SNP 856543 856543 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold145 SAMTools SNP 857734 857734 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold145 SAMTools SNP 860720 860720 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold145 SAMTools SNP 863458 863458 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold145 SAMTools SNP 866236 866236 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold145 SAMTools SNP 867994 867994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold145 SAMTools SNP 868000 868000 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0011%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold145 SAMTools SNP 868278 868278 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C225:99 scaffold145 SAMTools SNP 868494 868494 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold145 SAMTools SNP 868784 868784 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 868944 868944 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold145 SAMTools SNP 874565 874565 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold145 SAMTools SNP 878754 878754 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold145 SAMTools SNP 969073 969073 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.067%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C190:99 scaffold145 SAMTools SNP 969088 969088 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold145 SAMTools SNP 969136 969136 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold145 SAMTools SNP 969968 969968 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold145 SAMTools SNP 1016478 1016478 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold145 SAMTools SNP 1022299 1022299 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 1022667 1022667 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.45%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold145 SAMTools SNP 1024673 1024673 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C236:66 scaffold145 SAMTools SNP 1024685 1024685 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 1119278 1119278 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C2.2e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold145 SAMTools SNP 1119317 1119317 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold145 SAMTools SNP 1119326 1119326 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold145 SAMTools SNP 1119341 1119341 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.011%2C0.28%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C223:99 scaffold145 SAMTools SNP 1119792 1119792 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold145 SAMTools SNP 1121606 1121606 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold145 SAMTools SNP 1121627 1121627 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 1121970 1121970 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.026%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold145 SAMTools SNP 1121971 1121971 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.026%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C243:99 scaffold145 SAMTools SNP 1122564 1122564 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.39%2C0.46%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold145 SAMTools SNP 1122892 1122892 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold145 SAMTools SNP 1122898 1122898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 1122955 1122955 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold145 SAMTools SNP 1122981 1122981 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.046%2C0.06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold145 SAMTools SNP 1123003 1123003 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold145 SAMTools SNP 1123042 1123042 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.31%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold145 SAMTools SNP 1123536 1123536 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C26%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0049%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold145 SAMTools SNP 1123593 1123593 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C23%2C58%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 1124905 1124905 29.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold145 SAMTools SNP 1125419 1125419 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C53%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold145 SAMTools SNP 1125484 1125484 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold145 SAMTools SNP 1128403 1128403 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold145 SAMTools SNP 1129062 1129062 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold145 SAMTools SNP 1134344 1134344 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold145 SAMTools SNP 1134950 1134950 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold145 SAMTools SNP 1139973 1139973 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold145 SAMTools SNP 1140967 1140967 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C243:99 scaffold145 SAMTools SNP 1140986 1140986 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 1141048 1141048 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold145 SAMTools SNP 1141437 1141437 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold145 SAMTools SNP 1142045 1142045 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold145 SAMTools SNP 1142118 1142118 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold145 SAMTools SNP 1142159 1142159 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold145 SAMTools SNP 1142759 1142759 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold145 SAMTools SNP 1144056 1144056 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold145 SAMTools SNP 1144210 1144210 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C173:99 scaffold145 SAMTools SNP 1144665 1144665 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold145 SAMTools SNP 1144746 1144746 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold145 SAMTools SNP 1144995 1144995 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold145 SAMTools SNP 1145018 1145018 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold145 SAMTools SNP 1145057 1145057 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold145 SAMTools SNP 1145454 1145454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold145 SAMTools SNP 1145886 1145886 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C21%2C0:39 scaffold145 SAMTools SNP 1146506 1146506 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 1149308 1149308 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C113:30 scaffold145 SAMTools SNP 1149508 1149508 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold145 SAMTools SNP 1149535 1149535 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold145 SAMTools SNP 1149580 1149580 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold145 SAMTools SNP 1149589 1149589 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold145 SAMTools SNP 1150598 1150598 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold145 SAMTools SNP 1150628 1150628 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold145 SAMTools SNP 1150658 1150658 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold145 SAMTools SNP 1156372 1156372 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold145 SAMTools SNP 1156444 1156444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold145 SAMTools SNP 1157124 1157124 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C7.4e-05%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold145 SAMTools SNP 1157165 1157165 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold145 SAMTools SNP 1157943 1157943 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold145 SAMTools SNP 1157949 1157949 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold145 SAMTools SNP 1158297 1158297 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold145 SAMTools SNP 1158345 1158345 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold145 SAMTools SNP 1159311 1159311 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 1159634 1159634 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold145 SAMTools SNP 1162897 1162897 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C220:99 scaffold145 SAMTools SNP 1162974 1162974 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.53%2C1.8e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold145 SAMTools SNP 1163607 1163607 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold145 SAMTools SNP 1163621 1163621 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.097%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold145 SAMTools SNP 1164673 1164673 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C89:43 scaffold145 SAMTools SNP 1165326 1165326 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold145 SAMTools SNP 1165678 1165678 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.077%2C0.06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C132:99 scaffold145 SAMTools SNP 1165828 1165828 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold145 SAMTools SNP 1165831 1165831 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.14%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C196:99 scaffold145 SAMTools SNP 1166942 1166942 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold145 SAMTools SNP 1166948 1166948 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C65:68 scaffold145 SAMTools SNP 1166957 1166957 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold145 SAMTools SNP 1166981 1166981 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 1167362 1167362 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold145 SAMTools SNP 1168354 1168354 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold145 SAMTools SNP 1168876 1168876 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold145 SAMTools SNP 1168907 1168907 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold145 SAMTools SNP 1168909 1168909 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold145 SAMTools SNP 1168951 1168951 48.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold145 SAMTools SNP 1169550 1169550 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold145 SAMTools SNP 1169553 1169553 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.33%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold145 SAMTools SNP 1169572 1169572 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.093%2C1%2C8.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold145 SAMTools SNP 1169574 1169574 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold145 SAMTools SNP 1174308 1174308 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C31%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C85:88 scaffold145 SAMTools SNP 1175342 1175342 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold145 SAMTools SNP 1175421 1175421 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold145 SAMTools SNP 1175470 1175470 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.011%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold145 SAMTools SNP 1176131 1176131 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.29%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold145 SAMTools SNP 1176626 1176626 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.62%3BPV4%3D0.4%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C35:38 scaffold1451 SAMTools SNP 13364 13364 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1451 SAMTools SNP 14866 14866 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1451 SAMTools SNP 15028 15028 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1451 SAMTools SNP 15749 15749 44.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1451 SAMTools SNP 16453 16453 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1451 SAMTools SNP 19154 19154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1451 SAMTools SNP 32203 32203 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1451 SAMTools SNP 35056 35056 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1451 SAMTools SNP 36871 36871 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1451 SAMTools SNP 36894 36894 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1451 SAMTools SNP 39731 39731 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C251:99 scaffold1451 SAMTools SNP 43593 43593 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D47%3BFQ%3D4.13%3BPV4%3D0.44%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C29:32 scaffold1451 SAMTools SNP 43869 43869 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold1451 SAMTools SNP 44022 44022 14.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold1451 SAMTools SNP 44064 44064 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1451 SAMTools SNP 44106 44106 222 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0%2C251%2C21%2C248:99 scaffold1451 SAMTools SNP 44118 44118 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1451 SAMTools SNP 44597 44597 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D39%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C69%2C0:99 scaffold1451 SAMTools SNP 48525 48525 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1451 SAMTools SNP 48990 48990 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1451 SAMTools SNP 49035 49035 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C4%2C13%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C1.1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1451 SAMTools SNP 49604 49604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1451 SAMTools SNP 49613 49613 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1451 SAMTools SNP 49625 49625 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.34%2C0.39%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1451 SAMTools SNP 49682 49682 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1451 SAMTools SNP 49971 49971 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C44%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1451 SAMTools SNP 50016 50016 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C16%2C32%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1451 SAMTools SNP 50669 50669 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C1%2C29%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.64%2C7.5e-18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1451 SAMTools SNP 51981 51981 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1451 SAMTools SNP 51993 51993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1451 SAMTools SNP 52535 52535 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1451 SAMTools SNP 52553 52553 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1451 SAMTools SNP 52563 52563 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C0.1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C132:67 scaffold1451 SAMTools SNP 52595 52595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0031%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1451 SAMTools SNP 52604 52604 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1451 SAMTools SNP 52865 52865 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1451 SAMTools SNP 53108 53108 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1451 SAMTools SNP 53167 53167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00095%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1451 SAMTools SNP 53974 53974 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.04%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1451 SAMTools SNP 88751 88751 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1451 SAMTools SNP 89268 89268 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1452 SAMTools SNP 3545 3545 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1452 SAMTools SNP 15899 15899 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1452 SAMTools SNP 19140 19140 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1452 SAMTools SNP 19751 19751 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold1452 SAMTools SNP 19985 19985 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1452 SAMTools SNP 19994 19994 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.6%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1452 SAMTools SNP 20024 20024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.39%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1452 SAMTools SNP 20277 20277 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C11%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.19%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1452 SAMTools SNP 20539 20539 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1452 SAMTools SNP 20676 20676 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0168%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1452 SAMTools SNP 20687 20687 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.22%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C152:99 scaffold1452 SAMTools SNP 20717 20717 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1452 SAMTools SNP 23202 23202 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1452 SAMTools SNP 23214 23214 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1452 SAMTools SNP 40996 40996 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C24:27 scaffold1452 SAMTools SNP 41058 41058 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold1452 SAMTools SNP 41472 41472 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1452 SAMTools SNP 41536 41536 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1452 SAMTools SNP 132185 132185 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1452 SAMTools SNP 167655 167655 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1452 SAMTools SNP 173369 173369 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1452 SAMTools SNP 175257 175257 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C189:99 scaffold1452 SAMTools SNP 176580 176580 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C25%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1.8e-05%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1452 SAMTools SNP 179365 179365 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C46%2C0%2C20%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00055%2C2.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1452 SAMTools SNP 179607 179607 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1452 SAMTools SNP 186927 186927 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1452 SAMTools SNP 187005 187005 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1452 SAMTools SNP 187650 187650 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1452 SAMTools SNP 188674 188674 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C12%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.22%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1452 SAMTools SNP 188707 188707 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C0.48%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1452 SAMTools SNP 189188 189188 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.066%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1452 SAMTools SNP 189639 189639 96 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1452 SAMTools SNP 193487 193487 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1452 SAMTools SNP 198924 198924 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1452 SAMTools SNP 201302 201302 38.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold1452 SAMTools SNP 203821 203821 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.043%2C9.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1452 SAMTools SNP 215057 215057 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1454 SAMTools SNP 6664 6664 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1454 SAMTools SNP 6857 6857 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1454 SAMTools SNP 7550 7550 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1454 SAMTools SNP 9971 9971 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1454 SAMTools SNP 10312 10312 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1454 SAMTools SNP 54451 54451 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1454 SAMTools SNP 54882 54882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1454 SAMTools SNP 65203 65203 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1455 SAMTools SNP 2312 2312 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1455 SAMTools SNP 2857 2857 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1455 SAMTools SNP 2884 2884 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C7%2C52%3BMQ%3D50%3BFQ%3D-121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C0:99 scaffold1455 SAMTools SNP 3263 3263 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1455 SAMTools SNP 3740 3740 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C0%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.015%2C1%2C0.13%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C221:99 scaffold1455 SAMTools SNP 4159 4159 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C40:43 scaffold1455 SAMTools SNP 4162 4162 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1455 SAMTools SNP 4186 4186 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1455 SAMTools SNP 4234 4234 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C2%2C0%2C5%3BMQ%3D30%3BFQ%3D-29%3BPV4%3D0.061%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C2%2C0:5 scaffold1455 SAMTools SNP 4605 4605 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D15%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C72%2C0:99 scaffold1455 SAMTools SNP 5241 5241 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1455 SAMTools SNP 5292 5292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1455 SAMTools SNP 6211 6211 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D49%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1455 SAMTools SNP 6244 6244 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D19%3BFQ%3D-29%3BPV4%3D0.43%2C0.042%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C2%2C0:4 scaffold1455 SAMTools SNP 6292 6292 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C17%2C31%2C2%3BMQ%3D47%3BFQ%3D195%3BPV4%3D0.028%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1455 SAMTools SNP 6672 6672 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C1%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1455 SAMTools SNP 7045 7045 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1455 SAMTools SNP 7066 7066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1455 SAMTools SNP 8649 8649 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1455 SAMTools SNP 8652 8652 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1455 SAMTools SNP 8677 8677 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1455 SAMTools SNP 8931 8931 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1455 SAMTools SNP 8969 8969 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold1455 SAMTools SNP 8996 8996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1455 SAMTools SNP 9403 9403 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1455 SAMTools SNP 9734 9734 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C248:62 scaffold1455 SAMTools SNP 10042 10042 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1455 SAMTools SNP 10054 10054 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.021%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1455 SAMTools SNP 10096 10096 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1455 SAMTools SNP 10108 10108 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold1455 SAMTools SNP 11922 11922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1455 SAMTools SNP 11940 11940 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1455 SAMTools SNP 13036 13036 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C55%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1.7e-07%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1455 SAMTools SNP 13245 13245 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C48%2C0:93 scaffold1455 SAMTools SNP 16728 16728 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1455 SAMTools SNP 16749 16749 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1455 SAMTools SNP 18695 18695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1455 SAMTools SNP 18701 18701 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1455 SAMTools SNP 18776 18776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C80%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1455 SAMTools SNP 18788 18788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1455 SAMTools SNP 22011 22011 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1455 SAMTools SNP 22620 22620 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C6%2C36%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.075%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1455 SAMTools SNP 22671 22671 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1455 SAMTools SNP 22692 22692 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1455 SAMTools SNP 24177 24177 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C42%2C0:81 scaffold1455 SAMTools SNP 24189 24189 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.46%2C0.063%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C213:56 scaffold1455 SAMTools SNP 25144 25144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1455 SAMTools SNP 25850 25850 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C39%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1455 SAMTools SNP 26153 26153 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold1455 SAMTools SNP 26175 26175 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1455 SAMTools SNP 29932 29932 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1455 SAMTools SNP 29976 29976 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1455 SAMTools SNP 57147 57147 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C6%2C34%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.099%2C9.8e-58%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1455 SAMTools SNP 58666 58666 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C42%2C0:81 scaffold1455 SAMTools SNP 59212 59212 18.3 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C6%2C43%2C0%2C40:25 scaffold1455 SAMTools SNP 59248 59248 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold1455 SAMTools SNP 59707 59707 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C21%2C0:39 scaffold1455 SAMTools SNP 60261 60261 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C124:71 scaffold1455 SAMTools SNP 60429 60429 38.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1455 SAMTools SNP 60455 60455 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1455 SAMTools SNP 60972 60972 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1455 SAMTools SNP 64612 64612 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1455 SAMTools SNP 64647 64647 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1456 SAMTools SNP 469 469 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 613 613 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 632 632 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 23114 23114 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1456 SAMTools SNP 144797 144797 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 145898 145898 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1456 SAMTools SNP 146773 146773 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold1456 SAMTools SNP 147492 147492 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1456 SAMTools SNP 148599 148599 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.49%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold1456 SAMTools SNP 148604 148604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1456 SAMTools SNP 148722 148722 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 148731 148731 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1456 SAMTools SNP 149605 149605 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.47%2C0.16%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C251:99 scaffold1456 SAMTools SNP 149606 149606 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1456 SAMTools SNP 149627 149627 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C206:99 scaffold1456 SAMTools SNP 149726 149726 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1456 SAMTools SNP 149740 149740 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1456 SAMTools SNP 149741 149741 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C244:63 scaffold1456 SAMTools SNP 149762 149762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1456 SAMTools SNP 151193 151193 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C2%2C49%3BMQ%3D41%3BFQ%3D203%3BPV4%3D0.5%2C0.0077%2C5.1e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C239:99 scaffold1456 SAMTools SNP 151205 151205 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C17%3BMQ%3D32%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C160:99 scaffold1456 SAMTools SNP 151220 151220 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D13%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C87%2C0:99 scaffold1456 SAMTools SNP 151695 151695 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D25%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C96%2C0:99 scaffold1456 SAMTools SNP 155271 155271 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1456 SAMTools SNP 155277 155277 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1456 SAMTools SNP 155352 155352 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1456 SAMTools SNP 157943 157943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1456 SAMTools SNP 157950 157950 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1456 SAMTools SNP 185015 185015 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C15%2C0:27 scaffold1456 SAMTools SNP 185951 185951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1456 SAMTools SNP 185965 185965 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1456 SAMTools SNP 186080 186080 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D5.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1456 SAMTools SNP 186093 186093 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D9.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1456 SAMTools SNP 186215 186215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C34%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.033%2C1.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1456 SAMTools SNP 188340 188340 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1456 SAMTools SNP 190330 190330 222 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D35%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C238%2C10%2C235:99 scaffold1459 SAMTools SNP 13575 13575 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 13590 13590 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 28639 28639 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 28659 28659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1459 SAMTools SNP 29783 29783 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold1459 SAMTools SNP 36295 36295 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C30%2C0:57 scaffold1459 SAMTools SNP 39206 39206 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C102:99 scaffold1459 SAMTools SNP 40055 40055 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C50%2C0%2C44%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0023%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1459 SAMTools SNP 40100 40100 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1459 SAMTools SNP 40265 40265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1459 SAMTools SNP 40645 40645 39.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1459 SAMTools SNP 44977 44977 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold1459 SAMTools SNP 45046 45046 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1459 SAMTools SNP 46728 46728 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1459 SAMTools SNP 47138 47138 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1459 SAMTools SNP 47182 47182 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C68:71 scaffold1459 SAMTools SNP 47781 47781 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1459 SAMTools SNP 48528 48528 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.28%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1459 SAMTools SNP 48582 48582 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1459 SAMTools SNP 51343 51343 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1459 SAMTools SNP 52527 52527 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C54%2C0:99 scaffold1459 SAMTools SNP 53824 53824 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D0.18%2C1.9e-16%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C52%2C0:99 scaffold1459 SAMTools SNP 53869 53869 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C105%2C0:99 scaffold1459 SAMTools SNP 54532 54532 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1459 SAMTools SNP 54669 54669 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1459 SAMTools SNP 55189 55189 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C75%2C0:99 scaffold1459 SAMTools SNP 65157 65157 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 77709 77709 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D8.49%3BPV4%3D1%2C0.33%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C41:37 scaffold1459 SAMTools SNP 77711 77711 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1459 SAMTools SNP 77735 77735 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1459 SAMTools SNP 78877 78877 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1459 SAMTools SNP 78937 78937 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1459 SAMTools SNP 80827 80827 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1459 SAMTools SNP 81983 81983 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.01%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1459 SAMTools SNP 84249 84249 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1459 SAMTools SNP 85203 85203 31.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold1459 SAMTools SNP 85229 85229 21.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1459 SAMTools SNP 87959 87959 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C104%2C36%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.26%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1459 SAMTools SNP 88031 88031 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C158%2C75%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1459 SAMTools SNP 88329 88329 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C105%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C255%2C0:99 scaffold1459 SAMTools SNP 89861 89861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D45%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1459 SAMTools SNP 89879 89879 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C94%2C1%3BMQ%3D48%3BFQ%3D-270%3BPV4%3D2.6e-05%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C243%2C0:99 scaffold1459 SAMTools SNP 89891 89891 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C8%2C0%2C24%3BMQ%3D46%3BFQ%3D43%3BPV4%3D1.7e-19%2C1%2C3.4e-05%2C1.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1459 SAMTools SNP 90217 90217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C25%2C21%3BMQ%3D43%3BFQ%3D225%3BPV4%3D9.2e-05%2C0.016%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1459 SAMTools SNP 90244 90244 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C95%2C2%2C9%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D0.11%2C1%2C1%2C4.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1459 SAMTools SNP 90270 90270 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1459 SAMTools SNP 90987 90987 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1459 SAMTools SNP 91098 91098 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1459 SAMTools SNP 92871 92871 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1459 SAMTools SNP 96588 96588 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C13%2C0%3BMQ%3D47%3BFQ%3D85%3BPV4%3D0.00012%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C112:99 scaffold1459 SAMTools SNP 97999 97999 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 98502 98502 55.8 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1459 SAMTools SNP 98526 98526 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1459 SAMTools SNP 98994 98994 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1459 SAMTools SNP 99113 99113 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 99441 99441 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1459 SAMTools SNP 99816 99816 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1459 SAMTools SNP 99828 99828 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1459 SAMTools SNP 100272 100272 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1459 SAMTools SNP 100525 100525 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1459 SAMTools SNP 100615 100615 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1459 SAMTools SNP 102490 102490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.2%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold1459 SAMTools SNP 102550 102550 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C173:74 scaffold1459 SAMTools SNP 102601 102601 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1459 SAMTools SNP 103796 103796 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 103822 103822 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 108283 108283 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold1459 SAMTools SNP 116346 116346 20.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1459 SAMTools SNP 119441 119441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 119450 119450 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1459 SAMTools SNP 119562 119562 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1459 SAMTools SNP 119886 119886 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 120924 120924 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 120948 120948 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1459 SAMTools SNP 122243 122243 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1459 SAMTools SNP 122590 122590 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1459 SAMTools SNP 122741 122741 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1459 SAMTools SNP 123236 123236 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1459 SAMTools SNP 123240 123240 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1459 SAMTools SNP 123275 123275 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.25%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C238:99 scaffold1459 SAMTools SNP 123467 123467 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1459 SAMTools SNP 124082 124082 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.067%2C0.25%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C143:99 scaffold1459 SAMTools SNP 124711 124711 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1459 SAMTools SNP 125405 125405 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1459 SAMTools SNP 125467 125467 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1459 SAMTools SNP 126199 126199 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D43%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C193:99 scaffold1459 SAMTools SNP 126248 126248 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D42%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C161:99 scaffold1459 SAMTools SNP 126331 126331 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D41%3BFQ%3D6.99%3BPV4%3D1%2C1%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C156:33 scaffold1459 SAMTools SNP 127558 127558 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 128117 128117 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 128148 128148 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 163811 163811 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 164768 164768 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1459 SAMTools SNP 164793 164793 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C186:28 scaffold1459 SAMTools SNP 171940 171940 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1459 SAMTools SNP 172578 172578 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1459 SAMTools SNP 186986 186986 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 230209 230209 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1459 SAMTools SNP 230618 230618 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C18%2C0:33 scaffold1459 SAMTools SNP 243666 243666 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold1459 SAMTools SNP 243673 243673 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold1459 SAMTools SNP 244442 244442 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1459 SAMTools SNP 245237 245237 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1459 SAMTools SNP 247692 247692 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1459 SAMTools SNP 248443 248443 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1459 SAMTools SNP 249027 249027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1459 SAMTools SNP 249052 249052 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D47%3BFQ%3D122%3BPV4%3D1%2C1%2C0.17%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C154:99 scaffold1459 SAMTools SNP 249330 249330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold146 SAMTools SNP 2310 2310 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold146 SAMTools SNP 11060 11060 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold146 SAMTools SNP 11436 11436 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold146 SAMTools SNP 15430 15430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold146 SAMTools SNP 15486 15486 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold146 SAMTools SNP 21061 21061 47.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold146 SAMTools SNP 21399 21399 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold146 SAMTools SNP 22235 22235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold146 SAMTools SNP 23029 23029 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C31%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold146 SAMTools SNP 23091 23091 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C33%2C0:63 scaffold146 SAMTools SNP 23635 23635 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 24401 24401 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 30312 30312 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold146 SAMTools SNP 30353 30353 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C232:99 scaffold146 SAMTools SNP 30497 30497 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold146 SAMTools SNP 30535 30535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold146 SAMTools SNP 30775 30775 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 38764 38764 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold146 SAMTools SNP 39211 39211 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 39570 39570 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 39865 39865 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold146 SAMTools SNP 39885 39885 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold146 SAMTools SNP 40230 40230 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold146 SAMTools SNP 40521 40521 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C0.27%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C88:74 scaffold146 SAMTools SNP 40838 40838 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold146 SAMTools SNP 42534 42534 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold146 SAMTools SNP 47504 47504 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold146 SAMTools SNP 47921 47921 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold146 SAMTools SNP 47926 47926 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold146 SAMTools SNP 53367 53367 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold146 SAMTools SNP 53588 53588 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold146 SAMTools SNP 55900 55900 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 55906 55906 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 57732 57732 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold146 SAMTools SNP 57744 57744 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold146 SAMTools SNP 58109 58109 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold146 SAMTools SNP 58321 58321 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold146 SAMTools SNP 58351 58351 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold146 SAMTools SNP 58550 58550 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold146 SAMTools SNP 59000 59000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 59861 59861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 60205 60205 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C243:99 scaffold146 SAMTools SNP 60898 60898 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold146 SAMTools SNP 61083 61083 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 61101 61101 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.29%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C99:99 scaffold146 SAMTools SNP 63408 63408 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C7.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C142:50 scaffold146 SAMTools SNP 63541 63541 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold146 SAMTools SNP 63609 63609 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C42%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold146 SAMTools SNP 64698 64698 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 69647 69647 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 69679 69679 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 76511 76511 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold146 SAMTools SNP 78095 78095 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 78133 78133 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 78963 78963 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold146 SAMTools SNP 78966 78966 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold146 SAMTools SNP 80295 80295 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 80313 80313 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 81159 81159 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold146 SAMTools SNP 81188 81188 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold146 SAMTools SNP 83683 83683 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 89525 89525 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold146 SAMTools SNP 89531 89531 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold146 SAMTools SNP 89889 89889 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.48%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold146 SAMTools SNP 91460 91460 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C18%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.64%2C2.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold146 SAMTools SNP 103816 103816 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold146 SAMTools SNP 111198 111198 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D651%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C433%2C211%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold146 SAMTools SNP 113121 113121 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C163%2C0:99 scaffold146 SAMTools SNP 113163 113163 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C265%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold146 SAMTools SNP 113237 113237 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold146 SAMTools SNP 113487 113487 79 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C36%2C0%2C109%2C22%2C106:69 scaffold146 SAMTools SNP 121086 121086 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.7e-08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold146 SAMTools SNP 127751 127751 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold146 SAMTools SNP 127896 127896 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.41%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold146 SAMTools SNP 128133 128133 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 128895 128895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 129177 129177 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.026%2C9.1e-06%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold146 SAMTools SNP 129181 129181 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.15%2C6.2e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold146 SAMTools SNP 130216 130216 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.53%2C0.0048%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold146 SAMTools SNP 130906 130906 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.68%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold146 SAMTools SNP 130951 130951 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.023%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 131402 131402 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold146 SAMTools SNP 132742 132742 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold146 SAMTools SNP 132799 132799 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C0.08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold146 SAMTools SNP 133197 133197 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 133206 133206 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C4%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.015%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold146 SAMTools SNP 133964 133964 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold146 SAMTools SNP 134096 134096 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold146 SAMTools SNP 134843 134843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 134918 134918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 135652 135652 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold146 SAMTools SNP 135751 135751 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold146 SAMTools SNP 135903 135903 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold146 SAMTools SNP 138102 138102 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C16%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.48%2C2.2e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold146 SAMTools SNP 138120 138120 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.54%2C9.1e-05%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold146 SAMTools SNP 138497 138497 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.47%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 138605 138605 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.52%2C0.022%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C228:67 scaffold146 SAMTools SNP 138609 138609 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.47%2C0.027%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C188:75 scaffold146 SAMTools SNP 138823 138823 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.042%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold146 SAMTools SNP 140034 140034 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0047%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold146 SAMTools SNP 140486 140486 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold146 SAMTools SNP 142275 142275 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold146 SAMTools SNP 142858 142858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold146 SAMTools SNP 143059 143059 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold146 SAMTools SNP 143080 143080 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold146 SAMTools SNP 143227 143227 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold146 SAMTools SNP 143788 143788 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold146 SAMTools SNP 144117 144117 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C5.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold146 SAMTools SNP 144204 144204 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold146 SAMTools SNP 144493 144493 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold146 SAMTools SNP 144508 144508 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold146 SAMTools SNP 144583 144583 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.41%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold146 SAMTools SNP 144867 144867 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 145104 145104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 145126 145126 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 145370 145370 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold146 SAMTools SNP 145711 145711 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold146 SAMTools SNP 145772 145772 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 146906 146906 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.018%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold146 SAMTools SNP 147693 147693 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C20%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 148144 148144 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.082%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C214:99 scaffold146 SAMTools SNP 148153 148153 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.015%2C9.3e-05%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C180:74 scaffold146 SAMTools SNP 148226 148226 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0077%2C0.17%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold146 SAMTools SNP 148406 148406 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold146 SAMTools SNP 148454 148454 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 148478 148478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C42%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold146 SAMTools SNP 148998 148998 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 148999 148999 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C10%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0087%2C1.3e-10%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold146 SAMTools SNP 152536 152536 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold146 SAMTools SNP 153399 153399 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 154329 154329 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 154497 154497 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C10%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0032%2C3.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold146 SAMTools SNP 154838 154838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C62%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 155363 155363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold146 SAMTools SNP 155731 155731 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.59%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C246:99 scaffold146 SAMTools SNP 155772 155772 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.044%2C6.8e-15%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold146 SAMTools SNP 155779 155779 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold146 SAMTools SNP 156121 156121 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.53%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold146 SAMTools SNP 156710 156710 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold146 SAMTools SNP 158420 158420 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold146 SAMTools SNP 159335 159335 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold146 SAMTools SNP 159355 159355 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold146 SAMTools SNP 159374 159374 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C203:99 scaffold146 SAMTools SNP 159387 159387 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.9e-13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C186:39 scaffold146 SAMTools SNP 159894 159894 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold146 SAMTools SNP 159930 159930 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold146 SAMTools SNP 160052 160052 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C176:99 scaffold146 SAMTools SNP 160163 160163 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D47%3BFQ%3D110%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C164:99 scaffold146 SAMTools SNP 160299 160299 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C16%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold146 SAMTools SNP 161550 161550 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold146 SAMTools SNP 161585 161585 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold146 SAMTools SNP 161616 161616 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold146 SAMTools SNP 161624 161624 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold146 SAMTools SNP 161951 161951 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold146 SAMTools SNP 161976 161976 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold146 SAMTools SNP 162280 162280 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold146 SAMTools SNP 162947 162947 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 163070 163070 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold146 SAMTools SNP 170784 170784 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.16%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold146 SAMTools SNP 170829 170829 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C26%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold146 SAMTools SNP 171050 171050 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold146 SAMTools SNP 171095 171095 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold146 SAMTools SNP 171101 171101 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold146 SAMTools SNP 171133 171133 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 171385 171385 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold146 SAMTools SNP 171651 171651 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold146 SAMTools SNP 171777 171777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold146 SAMTools SNP 171956 171956 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold146 SAMTools SNP 172616 172616 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold146 SAMTools SNP 173673 173673 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D42%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C189:57 scaffold146 SAMTools SNP 174275 174275 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold146 SAMTools SNP 174285 174285 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold146 SAMTools SNP 179515 179515 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 179672 179672 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.13%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold146 SAMTools SNP 179816 179816 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.2%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold146 SAMTools SNP 179828 179828 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold146 SAMTools SNP 179895 179895 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold146 SAMTools SNP 180324 180324 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold146 SAMTools SNP 180557 180557 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.099%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold146 SAMTools SNP 180685 180685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold146 SAMTools SNP 184622 184622 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 184632 184632 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 190788 190788 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C4.2e-14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C213:68 scaffold146 SAMTools SNP 190822 190822 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C0.19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold146 SAMTools SNP 190830 190830 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.49%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold146 SAMTools SNP 191016 191016 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold146 SAMTools SNP 194412 194412 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold146 SAMTools SNP 195000 195000 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 201723 201723 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C102%2C0:99 scaffold146 SAMTools SNP 201735 201735 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold146 SAMTools SNP 201746 201746 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold146 SAMTools SNP 202396 202396 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold146 SAMTools SNP 203102 203102 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold146 SAMTools SNP 203243 203243 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold146 SAMTools SNP 203486 203486 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold146 SAMTools SNP 207005 207005 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.64%2C2.5e-06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold146 SAMTools SNP 207032 207032 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold146 SAMTools SNP 212490 212490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold146 SAMTools SNP 212548 212548 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold146 SAMTools SNP 215470 215470 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.59%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold146 SAMTools SNP 215829 215829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 215838 215838 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 215866 215866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 216119 216119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 216139 216139 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00025%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold146 SAMTools SNP 216531 216531 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 216600 216600 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold146 SAMTools SNP 216618 216618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold146 SAMTools SNP 217126 217126 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.31%2C0.069%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold146 SAMTools SNP 217247 217247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 217474 217474 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C10%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold146 SAMTools SNP 217891 217891 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold146 SAMTools SNP 217903 217903 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold146 SAMTools SNP 218255 218255 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold146 SAMTools SNP 218633 218633 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold146 SAMTools SNP 218645 218645 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 218654 218654 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 219495 219495 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold146 SAMTools SNP 221332 221332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold146 SAMTools SNP 221373 221373 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C63%2C0:99 scaffold146 SAMTools SNP 221476 221476 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold146 SAMTools SNP 221515 221515 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 221851 221851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 221861 221861 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 221957 221957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold146 SAMTools SNP 222273 222273 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.26%2C0.29%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold146 SAMTools SNP 222289 222289 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.26%2C0.44%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold146 SAMTools SNP 222326 222326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 222449 222449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 222503 222503 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold146 SAMTools SNP 222826 222826 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold146 SAMTools SNP 223397 223397 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C35:38 scaffold146 SAMTools SNP 223601 223601 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold146 SAMTools SNP 223638 223638 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold146 SAMTools SNP 223689 223689 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold146 SAMTools SNP 223742 223742 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C17%2C8%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold146 SAMTools SNP 224167 224167 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.53%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold146 SAMTools SNP 224183 224183 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 224207 224207 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold146 SAMTools SNP 224863 224863 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 224896 224896 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C19%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold146 SAMTools SNP 225666 225666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C53%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold146 SAMTools SNP 226189 226189 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C60%2C47%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold146 SAMTools SNP 226350 226350 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold146 SAMTools SNP 226394 226394 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold146 SAMTools SNP 227084 227084 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 233500 233500 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold146 SAMTools SNP 233866 233866 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold146 SAMTools SNP 234032 234032 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.27%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold146 SAMTools SNP 234038 234038 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.47%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold146 SAMTools SNP 239546 239546 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.26%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold146 SAMTools SNP 240548 240548 37.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold146 SAMTools SNP 253638 253638 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold146 SAMTools SNP 254644 254644 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold146 SAMTools SNP 281468 281468 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C107:43 scaffold146 SAMTools SNP 313906 313906 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold146 SAMTools SNP 314386 314386 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 314578 314578 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 315374 315374 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 354384 354384 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 354530 354530 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold146 SAMTools SNP 354562 354562 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold146 SAMTools SNP 362395 362395 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C180:30 scaffold146 SAMTools SNP 362473 362473 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C10%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C7.6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold146 SAMTools SNP 362521 362521 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold146 SAMTools SNP 362547 362547 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold146 SAMTools SNP 363155 363155 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold146 SAMTools SNP 363178 363178 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold146 SAMTools SNP 364494 364494 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold146 SAMTools SNP 366799 366799 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold146 SAMTools SNP 369044 369044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 369068 369068 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 389813 389813 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 424466 424466 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold146 SAMTools SNP 424922 424922 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.6%2C6.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C207:99 scaffold146 SAMTools SNP 425177 425177 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold146 SAMTools SNP 446312 446312 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 448172 448172 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 448202 448202 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 448230 448230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold146 SAMTools SNP 448264 448264 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0011%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold146 SAMTools SNP 448765 448765 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold146 SAMTools SNP 449720 449720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 449738 449738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C27%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold146 SAMTools SNP 450262 450262 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold146 SAMTools SNP 450300 450300 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C246:99 scaffold146 SAMTools SNP 450301 450301 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C246:99 scaffold146 SAMTools SNP 450613 450613 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold146 SAMTools SNP 451457 451457 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold146 SAMTools SNP 452496 452496 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 453752 453752 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 453791 453791 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 455624 455624 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D75.3%3BPV4%3D1%2C0.1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C107:99 scaffold146 SAMTools SNP 456625 456625 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold146 SAMTools SNP 456646 456646 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold146 SAMTools SNP 456845 456845 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 456908 456908 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 457347 457347 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold146 SAMTools SNP 458074 458074 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold146 SAMTools SNP 458075 458075 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 458093 458093 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold146 SAMTools SNP 459170 459170 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold146 SAMTools SNP 459203 459203 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 459215 459215 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 459236 459236 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 459413 459413 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold146 SAMTools SNP 459835 459835 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold146 SAMTools SNP 461218 461218 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold146 SAMTools SNP 461508 461508 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold146 SAMTools SNP 461556 461556 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 462022 462022 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 462400 462400 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 462407 462407 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 462947 462947 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold146 SAMTools SNP 463440 463440 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold146 SAMTools SNP 463500 463500 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold146 SAMTools SNP 467320 467320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 467354 467354 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 476081 476081 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 482329 482329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold146 SAMTools SNP 482423 482423 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 484476 484476 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 484484 484484 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 523508 523508 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 552009 552009 90.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C12%2C0:21 scaffold146 SAMTools SNP 585289 585289 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C39%2C0:75 scaffold146 SAMTools SNP 656069 656069 3.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C27:27 scaffold146 SAMTools SNP 656633 656633 49.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold146 SAMTools SNP 658718 658718 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold146 SAMTools SNP 661367 661367 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 662855 662855 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 667627 667627 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C0%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold146 SAMTools SNP 667636 667636 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C15%3BMQ%3D44%3BFQ%3D115%3BPV4%3D0.089%2C1%2C0.1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold146 SAMTools SNP 669152 669152 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C3%3BMQ%3D48%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold146 SAMTools SNP 669493 669493 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C0%3BMQ%3D48%3BFQ%3D69%3BPV4%3D0.0061%2C1%2C0.28%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C96:99 scaffold146 SAMTools SNP 671454 671454 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold146 SAMTools SNP 671463 671463 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C6%3BMQ%3D48%3BFQ%3D142%3BPV4%3D1%2C0.34%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold146 SAMTools SNP 672864 672864 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C5%3BMQ%3D38%3BFQ%3D12.3%3BPV4%3D0.46%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C39:42 scaffold146 SAMTools SNP 674231 674231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold146 SAMTools SNP 674303 674303 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C6%2C15%2C0%3BMQ%3D49%3BFQ%3D60%3BPV4%3D0.59%2C1%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold146 SAMTools SNP 678159 678159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold146 SAMTools SNP 678167 678167 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C72%2C0%2C12%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C203:89 scaffold146 SAMTools SNP 679291 679291 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 679300 679300 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold146 SAMTools SNP 679661 679661 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold146 SAMTools SNP 679727 679727 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C24%2C0:45 scaffold146 SAMTools SNP 679769 679769 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold146 SAMTools SNP 680260 680260 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 680859 680859 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.12%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C134:99 scaffold146 SAMTools SNP 680979 680979 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold146 SAMTools SNP 683743 683743 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C235:99 scaffold146 SAMTools SNP 684013 684013 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C8.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold146 SAMTools SNP 684118 684118 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 684481 684481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold146 SAMTools SNP 685711 685711 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C81%2C0:99 scaffold146 SAMTools SNP 685750 685750 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold146 SAMTools SNP 686305 686305 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold146 SAMTools SNP 686383 686383 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C16%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold146 SAMTools SNP 686641 686641 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.032%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold146 SAMTools SNP 686647 686647 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.034%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold146 SAMTools SNP 686672 686672 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold146 SAMTools SNP 686834 686834 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C10%2C0%3BMQ%3D49%3BFQ%3D91%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold146 SAMTools SNP 687150 687150 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C6%2C1%3BMQ%3D49%3BFQ%3D72%3BPV4%3D0.12%2C1%2C0.067%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold146 SAMTools SNP 687192 687192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C39%3BMQ%3D50%3BFQ%3D-133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C106%2C0:99 scaffold146 SAMTools SNP 687257 687257 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C8%3BMQ%3D48%3BFQ%3D91%3BPV4%3D1%2C0.0034%2C0.28%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold146 SAMTools SNP 687258 687258 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C6%3BMQ%3D48%3BFQ%3D125%3BPV4%3D0.47%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold146 SAMTools SNP 687678 687678 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold146 SAMTools SNP 688730 688730 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold146 SAMTools SNP 689256 689256 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold146 SAMTools SNP 693160 693160 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 693638 693638 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold146 SAMTools SNP 693682 693682 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 693812 693812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 694439 694439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold146 SAMTools SNP 694484 694484 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold146 SAMTools SNP 697605 697605 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold146 SAMTools SNP 697662 697662 77 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C49%2C76%2C79%2C0%2C107:30 scaffold146 SAMTools SNP 697707 697707 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 697997 697997 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 698054 698054 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 698120 698120 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold146 SAMTools SNP 698126 698126 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold146 SAMTools SNP 698225 698225 30.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold146 SAMTools SNP 698366 698366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold146 SAMTools SNP 698629 698629 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C231:99 scaffold146 SAMTools SNP 698638 698638 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C254:99 scaffold146 SAMTools SNP 698713 698713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold146 SAMTools SNP 699060 699060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold146 SAMTools SNP 699090 699090 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold146 SAMTools SNP 699153 699153 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold146 SAMTools SNP 699189 699189 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold146 SAMTools SNP 700246 700246 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold146 SAMTools SNP 700612 700612 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C17%2C4%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.74%2C2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold146 SAMTools SNP 701031 701031 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.026%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold146 SAMTools SNP 701124 701124 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold146 SAMTools SNP 701162 701162 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0016%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C229:40 scaffold146 SAMTools SNP 701576 701576 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.33%2C0.28%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C227:99 scaffold146 SAMTools SNP 701582 701582 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C208:99 scaffold146 SAMTools SNP 701651 701651 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C21%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 702041 702041 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C0%2C19%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.16%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold146 SAMTools SNP 702065 702065 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 702508 702508 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.00067%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold146 SAMTools SNP 702853 702853 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold146 SAMTools SNP 703257 703257 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 703458 703458 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold146 SAMTools SNP 703499 703499 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 704244 704244 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold146 SAMTools SNP 704294 704294 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold146 SAMTools SNP 704451 704451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold146 SAMTools SNP 704478 704478 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.14%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold146 SAMTools SNP 704728 704728 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold146 SAMTools SNP 705207 705207 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold146 SAMTools SNP 705252 705252 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C227:28 scaffold146 SAMTools SNP 708787 708787 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold146 SAMTools SNP 709351 709351 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C184:70 scaffold146 SAMTools SNP 709400 709400 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold146 SAMTools SNP 710113 710113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold146 SAMTools SNP 710893 710893 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.43%2C0.0012%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C163:80 scaffold146 SAMTools SNP 710899 710899 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.014%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C228:59 scaffold146 SAMTools SNP 710905 710905 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.033%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C217:99 scaffold146 SAMTools SNP 711547 711547 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold146 SAMTools SNP 711549 711549 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold146 SAMTools SNP 716060 716060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C29%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold146 SAMTools SNP 716084 716084 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C22%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold146 SAMTools SNP 716773 716773 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 716779 716779 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 717231 717231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold146 SAMTools SNP 717270 717270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.52%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold146 SAMTools SNP 717336 717336 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold146 SAMTools SNP 717991 717991 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 718042 718042 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C198:99 scaffold146 SAMTools SNP 719200 719200 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C81:84 scaffold146 SAMTools SNP 720973 720973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold146 SAMTools SNP 721225 721225 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold146 SAMTools SNP 721596 721596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C15%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold146 SAMTools SNP 722117 722117 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold146 SAMTools SNP 722120 722120 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C2%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C0.083%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold146 SAMTools SNP 722695 722695 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.43%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C169:99 scaffold146 SAMTools SNP 722698 722698 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold146 SAMTools SNP 722713 722713 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold146 SAMTools SNP 722755 722755 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold146 SAMTools SNP 722794 722794 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 723547 723547 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 723945 723945 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 723979 723979 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold146 SAMTools SNP 726117 726117 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold146 SAMTools SNP 726768 726768 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold146 SAMTools SNP 726936 726936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold146 SAMTools SNP 727301 727301 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold146 SAMTools SNP 727307 727307 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold146 SAMTools SNP 727670 727670 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 728081 728081 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold146 SAMTools SNP 729553 729553 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C223:99 scaffold146 SAMTools SNP 729883 729883 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold146 SAMTools SNP 729912 729912 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 730613 730613 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold146 SAMTools SNP 730661 730661 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold146 SAMTools SNP 730733 730733 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold146 SAMTools SNP 731143 731143 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 732271 732271 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 732289 732289 55.8 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C24%2C86%2C0%2C83:10 scaffold146 SAMTools SNP 732979 732979 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold146 SAMTools SNP 735455 735455 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.52%2C9.9e-06%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold146 SAMTools SNP 736937 736937 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold146 SAMTools SNP 736967 736967 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold146 SAMTools SNP 737006 737006 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold146 SAMTools SNP 737898 737898 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold146 SAMTools SNP 737910 737910 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 738147 738147 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 738465 738465 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.091%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C158:99 scaffold146 SAMTools SNP 740507 740507 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 741159 741159 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C52%2C0:99 scaffold146 SAMTools SNP 741163 741163 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold146 SAMTools SNP 743615 743615 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C7.7e-09%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C243:39 scaffold146 SAMTools SNP 744179 744179 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold146 SAMTools SNP 744203 744203 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold146 SAMTools SNP 744326 744326 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.12%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold146 SAMTools SNP 747604 747604 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C38%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold146 SAMTools SNP 747646 747646 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold146 SAMTools SNP 780982 780982 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold146 SAMTools SNP 780997 780997 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C217:99 scaffold146 SAMTools SNP 783607 783607 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold146 SAMTools SNP 783632 783632 40.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold146 SAMTools SNP 783968 783968 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold146 SAMTools SNP 784010 784010 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 790245 790245 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold146 SAMTools SNP 791347 791347 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold146 SAMTools SNP 792734 792734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold146 SAMTools SNP 792773 792773 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.085%2C0.19%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold146 SAMTools SNP 792809 792809 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C6%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00052%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C228:99 scaffold146 SAMTools SNP 792824 792824 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0013%2C4.9e-11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C235:63 scaffold146 SAMTools SNP 794336 794336 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold146 SAMTools SNP 794376 794376 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.086%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold146 SAMTools SNP 794380 794380 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold146 SAMTools SNP 794423 794423 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold146 SAMTools SNP 794450 794450 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.35%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold146 SAMTools SNP 794798 794798 53.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C12:15 scaffold146 SAMTools SNP 795564 795564 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold146 SAMTools SNP 795591 795591 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold146 SAMTools SNP 795633 795633 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold146 SAMTools SNP 795645 795645 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold146 SAMTools SNP 796384 796384 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold146 SAMTools SNP 796422 796422 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold146 SAMTools SNP 796599 796599 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 796611 796611 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold146 SAMTools SNP 797709 797709 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold146 SAMTools SNP 797916 797916 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.24%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold146 SAMTools SNP 797985 797985 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.065%2C5.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C169:99 scaffold146 SAMTools SNP 798024 798024 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold146 SAMTools SNP 798466 798466 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold146 SAMTools SNP 798974 798974 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold146 SAMTools SNP 799067 799067 32.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold146 SAMTools SNP 827740 827740 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.4%2C0.0061%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C20:23 scaffold146 SAMTools SNP 828687 828687 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold146 SAMTools SNP 828691 828691 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold146 SAMTools SNP 841682 841682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C18%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.39%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold146 SAMTools SNP 841940 841940 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C9%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C6.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold146 SAMTools SNP 842226 842226 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 842681 842681 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D27%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C0.0028%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold146 SAMTools SNP 843582 843582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C45%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 843710 843710 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold146 SAMTools SNP 845947 845947 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 852280 852280 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold146 SAMTools SNP 867700 867700 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold146 SAMTools SNP 898383 898383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 898467 898467 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.1%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold146 SAMTools SNP 899219 899219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 899455 899455 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold146 SAMTools SNP 899501 899501 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 900083 900083 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold146 SAMTools SNP 900092 900092 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold146 SAMTools SNP 901633 901633 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold146 SAMTools SNP 901652 901652 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold146 SAMTools SNP 901999 901999 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold146 SAMTools SNP 902226 902226 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C22%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold146 SAMTools SNP 902806 902806 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 902869 902869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold146 SAMTools SNP 902881 902881 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold146 SAMTools SNP 904994 904994 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C18%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C251:99 scaffold146 SAMTools SNP 905591 905591 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold146 SAMTools SNP 905760 905760 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold146 SAMTools SNP 905790 905790 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold146 SAMTools SNP 907445 907445 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 910277 910277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C51%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold146 SAMTools SNP 919403 919403 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold146 SAMTools SNP 919689 919689 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C3%2C0%3BMQ%3D48%3BFQ%3D20.1%3BPV4%3D0.067%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold146 SAMTools SNP 919743 919743 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C57%2C0:99 scaffold146 SAMTools SNP 919992 919992 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D11.3%3BPV4%3D0.4%2C0.084%2C0.058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C76:40 scaffold146 SAMTools SNP 920070 920070 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold146 SAMTools SNP 920113 920113 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C104:36 scaffold146 SAMTools SNP 920422 920422 13.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C1%2C0:3 scaffold146 SAMTools SNP 920441 920441 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold146 SAMTools SNP 920444 920444 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D4.77%3BPV4%3D0.4%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C115:28 scaffold146 SAMTools SNP 920568 920568 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold146 SAMTools SNP 920977 920977 21.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold146 SAMTools SNP 921193 921193 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C21%2C30%2C3%3BMQ%3D37%3BFQ%3D141%3BPV4%3D0.19%2C8.5e-09%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold146 SAMTools SNP 927401 927401 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold146 SAMTools SNP 928684 928684 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C216:53 scaffold146 SAMTools SNP 928688 928688 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C209:31 scaffold146 SAMTools SNP 928693 928693 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C0.06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C218:59 scaffold146 SAMTools SNP 928706 928706 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.17%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C247:68 scaffold146 SAMTools SNP 929100 929100 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.52%2C0.032%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C152:99 scaffold146 SAMTools SNP 929792 929792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 929813 929813 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C27%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.5%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold146 SAMTools SNP 930077 930077 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.054%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold146 SAMTools SNP 930863 930863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold146 SAMTools SNP 930901 930901 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold146 SAMTools SNP 931510 931510 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C197:99 scaffold146 SAMTools SNP 935465 935465 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 981150 981150 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold146 SAMTools SNP 989675 989675 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D6.72%3BPV4%3D0.33%2C0.058%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold146 SAMTools SNP 989724 989724 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.13%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1460 SAMTools SNP 8347 8347 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1460 SAMTools SNP 8359 8359 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1460 SAMTools SNP 8528 8528 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1460 SAMTools SNP 51756 51756 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1460 SAMTools SNP 86388 86388 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1460 SAMTools SNP 88678 88678 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1460 SAMTools SNP 92250 92250 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1462 SAMTools SNP 494 494 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1462 SAMTools SNP 3468 3468 11.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold1462 SAMTools SNP 3776 3776 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D1%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold1462 SAMTools SNP 12815 12815 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 115602 115602 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D31.9%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C77:62 scaffold1462 SAMTools SNP 120968 120968 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1462 SAMTools SNP 126325 126325 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C19%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 127398 127398 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C33%2C0:63 scaffold1462 SAMTools SNP 127473 127473 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1462 SAMTools SNP 127738 127738 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1462 SAMTools SNP 127831 127831 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C36%2C0:69 scaffold1462 SAMTools SNP 128357 128357 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1462 SAMTools SNP 128420 128420 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1462 SAMTools SNP 128483 128483 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1462 SAMTools SNP 128537 128537 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.21%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1462 SAMTools SNP 128878 128878 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C201:66 scaffold1462 SAMTools SNP 129169 129169 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1462 SAMTools SNP 129242 129242 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1462 SAMTools SNP 129260 129260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1462 SAMTools SNP 130787 130787 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1462 SAMTools SNP 130926 130926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1462 SAMTools SNP 131251 131251 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1462 SAMTools SNP 131292 131292 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 131456 131456 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C36%2C0:68 scaffold1462 SAMTools SNP 131525 131525 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1462 SAMTools SNP 131549 131549 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C245:99 scaffold1462 SAMTools SNP 131741 131741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1462 SAMTools SNP 132095 132095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1462 SAMTools SNP 132119 132119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1462 SAMTools SNP 132454 132454 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.35%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 132459 132459 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 133015 133015 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D69%2C33%2C3%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.033%2C0.022%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1462 SAMTools SNP 133426 133426 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 138581 138581 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C3%2C36%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 138670 138670 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold1462 SAMTools SNP 138782 138782 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.15%2C0.1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1462 SAMTools SNP 138985 138985 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 139606 139606 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 139670 139670 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1462 SAMTools SNP 140400 140400 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C1%2C12%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1462 SAMTools SNP 140794 140794 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C1%2C13%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.66%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1462 SAMTools SNP 140818 140818 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.28%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1462 SAMTools SNP 140990 140990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1462 SAMTools SNP 141460 141460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1462 SAMTools SNP 141532 141532 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C63%2C0:99 scaffold1462 SAMTools SNP 141601 141601 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1462 SAMTools SNP 141784 141784 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C66%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 142183 142183 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C63%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.027%2C0.14%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold1462 SAMTools SNP 142560 142560 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C53%2C27%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1462 SAMTools SNP 142922 142922 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1462 SAMTools SNP 142927 142927 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1462 SAMTools SNP 142941 142941 6.95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1462 SAMTools SNP 142983 142983 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C2.4e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1462 SAMTools SNP 143034 143034 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C202:99 scaffold1462 SAMTools SNP 143285 143285 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C33%2C0:63 scaffold1462 SAMTools SNP 143478 143478 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1462 SAMTools SNP 143785 143785 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 143808 143808 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D48%3BFQ%3D70%3BPV4%3D1%2C0.0018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C235:99 scaffold1462 SAMTools SNP 143813 143813 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C0.17%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C201:60 scaffold1462 SAMTools SNP 147498 147498 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1462 SAMTools SNP 148375 148375 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1462 SAMTools SNP 150269 150269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1462 SAMTools SNP 150601 150601 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1462 SAMTools SNP 150622 150622 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1462 SAMTools SNP 198432 198432 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 213922 213922 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1462 SAMTools SNP 224688 224688 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1.4e-20%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C55%2C0:99 scaffold1462 SAMTools SNP 225308 225308 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C186:60 scaffold1462 SAMTools SNP 225692 225692 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold1462 SAMTools SNP 231449 231449 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1462 SAMTools SNP 231456 231456 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.41%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1462 SAMTools SNP 231501 231501 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C81%2C0:99 scaffold1462 SAMTools SNP 231518 231518 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.045%2C1.3e-05%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1462 SAMTools SNP 231896 231896 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1462 SAMTools SNP 232403 232403 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1462 SAMTools SNP 233089 233089 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1462 SAMTools SNP 234922 234922 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.016%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C95:74 scaffold1462 SAMTools SNP 239177 239177 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1462 SAMTools SNP 239213 239213 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.31%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold1462 SAMTools SNP 239246 239246 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1462 SAMTools SNP 240432 240432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1462 SAMTools SNP 240895 240895 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1462 SAMTools SNP 241157 241157 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold1462 SAMTools SNP 241796 241796 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 242908 242908 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 243351 243351 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1462 SAMTools SNP 243959 243959 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 243962 243962 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 243997 243997 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.29%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C87:33 scaffold1462 SAMTools SNP 244765 244765 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1462 SAMTools SNP 245136 245136 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C6.8e-07%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C188:99 scaffold1462 SAMTools SNP 258768 258768 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C35%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1462 SAMTools SNP 259002 259002 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1462 SAMTools SNP 259030 259030 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C64%2C2%2C31%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.26%2C8.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1462 SAMTools SNP 260076 260076 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 260725 260725 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C47%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C4.8e-55%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 261071 261071 137 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C63%2C0%2C157%2C37%2C154:99 scaffold1462 SAMTools SNP 261199 261199 27.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1462 SAMTools SNP 262125 262125 40.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1462 SAMTools SNP 262701 262701 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1462 SAMTools SNP 263754 263754 40.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1.9e-07%2C1%2C9.1e-16;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C4%2C0:7 scaffold1462 SAMTools SNP 270482 270482 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1462 SAMTools SNP 276019 276019 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C222:49 scaffold1462 SAMTools SNP 276082 276082 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1462 SAMTools SNP 276479 276479 22.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1462 SAMTools SNP 276527 276527 39.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1462 SAMTools SNP 281886 281886 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1462 SAMTools SNP 282269 282269 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C36%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.046%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C209:99 scaffold1462 SAMTools SNP 282676 282676 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 282738 282738 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 283860 283860 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1462 SAMTools SNP 283872 283872 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1462 SAMTools SNP 283886 283886 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1462 SAMTools SNP 284275 284275 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1462 SAMTools SNP 285128 285128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1462 SAMTools SNP 285955 285955 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C1%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1462 SAMTools SNP 286209 286209 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold1462 SAMTools SNP 287088 287088 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C99%2C0:99 scaffold1462 SAMTools SNP 287299 287299 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold1462 SAMTools SNP 287320 287320 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1462 SAMTools SNP 288773 288773 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1462 SAMTools SNP 289097 289097 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1462 SAMTools SNP 289855 289855 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1462 SAMTools SNP 289978 289978 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C96%2C0:99 scaffold1462 SAMTools SNP 294596 294596 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C3%3BMQ%3D21%3BFQ%3D6.22%3BPV4%3D1%2C0.24%2C0.36%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C33:36 scaffold1462 SAMTools SNP 371595 371595 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1462 SAMTools SNP 371779 371779 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1462 SAMTools SNP 374224 374224 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1462 SAMTools SNP 374397 374397 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1462 SAMTools SNP 379058 379058 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1462 SAMTools SNP 379736 379736 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1462 SAMTools SNP 379780 379780 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1462 SAMTools SNP 382375 382375 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1462 SAMTools SNP 386505 386505 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1462 SAMTools SNP 386576 386576 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 537 537 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1464 SAMTools SNP 548 548 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1464 SAMTools SNP 635 635 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 11807 11807 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C45%2C0:87 scaffold1464 SAMTools SNP 53976 53976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 57717 57717 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 57763 57763 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 57765 57765 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1464 SAMTools SNP 59030 59030 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1464 SAMTools SNP 59048 59048 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1464 SAMTools SNP 59072 59072 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C36%2C0:69 scaffold1464 SAMTools SNP 62309 62309 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1467 SAMTools SNP 11746 11746 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.16%2C4.6e-09%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1467 SAMTools SNP 17498 17498 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1467 SAMTools SNP 18173 18173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C2%2C50%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 18733 18733 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C29%2C106%2C20%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.053%2C1.9e-168%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1467 SAMTools SNP 19094 19094 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D31%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C72%2C0:99 scaffold1467 SAMTools SNP 25294 25294 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1467 SAMTools SNP 25563 25563 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1467 SAMTools SNP 25599 25599 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1467 SAMTools SNP 26179 26179 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.067%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C234:99 scaffold1467 SAMTools SNP 26420 26420 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1.2e-05%2C7.3e-17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1467 SAMTools SNP 26485 26485 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.12%2C0.047%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1467 SAMTools SNP 26491 26491 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1467 SAMTools SNP 27172 27172 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1467 SAMTools SNP 27186 27186 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1467 SAMTools SNP 29600 29600 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1467 SAMTools SNP 29609 29609 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1467 SAMTools SNP 29639 29639 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1467 SAMTools SNP 29934 29934 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0091%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C252:69 scaffold1467 SAMTools SNP 29940 29940 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1467 SAMTools SNP 29943 29943 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1467 SAMTools SNP 29997 29997 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1467 SAMTools SNP 30006 30006 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.23%2C6.4e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C104:99 scaffold1467 SAMTools SNP 37102 37102 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C1%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C247%2C0:99 scaffold1467 SAMTools SNP 38408 38408 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1467 SAMTools SNP 41470 41470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C66%3BMQ%3D47%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1467 SAMTools SNP 44725 44725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C73%2C87%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 47121 47121 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C157%2C3%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-08%2C0.00079%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 49729 49729 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C8%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.43%2C4.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1467 SAMTools SNP 61070 61070 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1467 SAMTools SNP 65144 65144 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0047%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.49%2C1.5e-07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1467 SAMTools SNP 95211 95211 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1467 SAMTools SNP 108817 108817 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D784%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C411%2C30%2C327%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C2.7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 108940 108940 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D719%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C290%2C10%2C310%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-20%2C1%2C1%2C5.3e-74;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 109156 109156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C135%2C101%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-40%2C0.00053%2C1%2C1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 109180 109180 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1467 SAMTools SNP 109371 109371 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1467 SAMTools SNP 109393 109393 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C100%2C11%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1467 SAMTools SNP 109413 109413 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 109434 109434 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1467 SAMTools SNP 109446 109446 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C31%2C62%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 109789 109789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D469%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C77%2C153%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 109983 109983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D446%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C315%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1467 SAMTools SNP 110089 110089 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C112%2C16%2C46%3BMQ%3D50%3BFQ%3D174%3BPV4%3D3e-05%2C5.8e-13%2C1%2C2.2e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1467 SAMTools SNP 110102 110102 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1467 SAMTools SNP 110791 110791 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C73%2C31%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C4.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 110821 110821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C1%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1467 SAMTools SNP 111821 111821 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1467 SAMTools SNP 112388 112388 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1468 SAMTools SNP 83 83 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1468 SAMTools SNP 17067 17067 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1468 SAMTools SNP 17649 17649 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C71:40 scaffold1468 SAMTools SNP 28802 28802 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1468 SAMTools SNP 29268 29268 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C22%2C129%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 34247 34247 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C27%2C88%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 34799 34799 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1427%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C1218%2C200%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 35368 35368 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 37052 37052 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C198%2C211%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 37343 37343 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D683%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C324%2C212%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 37751 37751 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1468 SAMTools SNP 37752 37752 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1468 SAMTools SNP 37753 37753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 38941 38941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2230%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C157%2C2072%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 40832 40832 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C2.2e-42%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C243:99 scaffold1468 SAMTools SNP 42493 42493 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1468 SAMTools SNP 43202 43202 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C48%2C0:92 scaffold1468 SAMTools SNP 44957 44957 35.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1468 SAMTools SNP 45203 45203 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1468 SAMTools SNP 45271 45271 33.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1468 SAMTools SNP 45402 45402 19.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold1468 SAMTools SNP 45533 45533 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C3.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C121:53 scaffold1468 SAMTools SNP 46636 46636 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1468 SAMTools SNP 49806 49806 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 50788 50788 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1468 SAMTools SNP 51093 51093 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 57775 57775 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 57788 57788 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1468 SAMTools SNP 59202 59202 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C44%3BMQ%3D50%3BFQ%3D-123%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1468 SAMTools SNP 59235 59235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1468 SAMTools SNP 59430 59430 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C255%2C0:99 scaffold1468 SAMTools SNP 61045 61045 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1451%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D681%2C0%2C770%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 62733 62733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1561%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C771%2C57%2C682%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C4e-08%2C0.15%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 62773 62773 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C205%2C0%2C86%3BMQ%3D50%3BFQ%3D55%3BPV4%3D5.5e-09%2C1%2C1%2C3.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1468 SAMTools SNP 63167 63167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C38%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1468 SAMTools SNP 63330 63330 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.17%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1468 SAMTools SNP 63345 63345 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.067%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 64884 64884 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C55%2C3%2C47%3BMQ%3D50%3BFQ%3D63%3BPV4%3D2.8e-07%2C3.3e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1468 SAMTools SNP 65502 65502 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C65%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1468 SAMTools SNP 65547 65547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1468 SAMTools SNP 65769 65769 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00094%2C0.28%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 65810 65810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C12%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 66401 66401 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 66681 66681 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 67896 67896 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C15%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.051%2C7.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1468 SAMTools SNP 68263 68263 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 68368 68368 22.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0335%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold1468 SAMTools SNP 68650 68650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 69071 69071 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C80%2C47%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C0.081%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 69522 69522 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1468 SAMTools SNP 69540 69540 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C8.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 69585 69585 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.067%2C0.00011%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1468 SAMTools SNP 69738 69738 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C6.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C236:58 scaffold1468 SAMTools SNP 69985 69985 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C215:54 scaffold1468 SAMTools SNP 70027 70027 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1468 SAMTools SNP 70129 70129 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.24%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1468 SAMTools SNP 70147 70147 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 70347 70347 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C78%3BMQ%3D50%3BFQ%3D-271%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1468 SAMTools SNP 70398 70398 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.32%2C0.43%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1468 SAMTools SNP 70690 70690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C11%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.62%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1468 SAMTools SNP 70822 70822 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C41%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C154%2C0:99 scaffold1468 SAMTools SNP 71666 71666 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 71923 71923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 72082 72082 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 72308 72308 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1468 SAMTools SNP 72685 72685 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 72958 72958 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1468 SAMTools SNP 72986 72986 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1468 SAMTools SNP 77159 77159 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1468 SAMTools SNP 128305 128305 33.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1468 SAMTools SNP 137287 137287 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C15%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.00017%2C2.7e-10%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1468 SAMTools SNP 138386 138386 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1468 SAMTools SNP 138700 138700 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1468 SAMTools SNP 138976 138976 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C10%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 139507 139507 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1468 SAMTools SNP 139516 139516 87.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold1468 SAMTools SNP 139571 139571 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1468 SAMTools SNP 141591 141591 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1468 SAMTools SNP 141613 141613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1468 SAMTools SNP 142445 142445 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1468 SAMTools SNP 142477 142477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1468 SAMTools SNP 143384 143384 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1468 SAMTools SNP 143393 143393 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1468 SAMTools SNP 143920 143920 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1469 SAMTools SNP 43745 43745 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.003%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1469 SAMTools SNP 44107 44107 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1469 SAMTools SNP 44611 44611 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1469 SAMTools SNP 49387 49387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 50975 50975 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1469 SAMTools SNP 51471 51471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 51540 51540 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1469 SAMTools SNP 52297 52297 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C20:23 scaffold1469 SAMTools SNP 64036 64036 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1469 SAMTools SNP 64206 64206 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1469 SAMTools SNP 64230 64230 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1469 SAMTools SNP 78146 78146 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1469 SAMTools SNP 122530 122530 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1469 SAMTools SNP 125003 125003 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1469 SAMTools SNP 127726 127726 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C22%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.014%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C231:99 scaffold1469 SAMTools SNP 127955 127955 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1469 SAMTools SNP 128008 128008 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1469 SAMTools SNP 129016 129016 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1469 SAMTools SNP 131820 131820 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1469 SAMTools SNP 137930 137930 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C175:99 scaffold1469 SAMTools SNP 137942 137942 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C219:99 scaffold1469 SAMTools SNP 137948 137948 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1469 SAMTools SNP 137978 137978 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.11%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C154:99 scaffold1469 SAMTools SNP 138241 138241 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1469 SAMTools SNP 138377 138377 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1469 SAMTools SNP 139106 139106 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1469 SAMTools SNP 139166 139166 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1469 SAMTools SNP 139172 139172 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1469 SAMTools SNP 144723 144723 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1469 SAMTools SNP 145420 145420 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1469 SAMTools SNP 145469 145469 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.0095%2C0.00035%2C1%2C9.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C228:34 scaffold1469 SAMTools SNP 146268 146268 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1469 SAMTools SNP 148363 148363 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C18%2C0:33 scaffold1469 SAMTools SNP 148369 148369 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold1469 SAMTools SNP 149400 149400 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1469 SAMTools SNP 156714 156714 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1469 SAMTools SNP 158104 158104 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.13%2C0.014%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C252:44 scaffold1469 SAMTools SNP 161525 161525 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 163191 163191 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1469 SAMTools SNP 163196 163196 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1469 SAMTools SNP 163526 163526 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1469 SAMTools SNP 164165 164165 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C26%2C15%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C8.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1469 SAMTools SNP 168595 168595 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C67%2C0:99 scaffold1469 SAMTools SNP 168775 168775 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.15%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1469 SAMTools SNP 169303 169303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1469 SAMTools SNP 169306 169306 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1469 SAMTools SNP 169360 169360 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 170587 170587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C0.38%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 170849 170849 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C8%2C47%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 173444 173444 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C73%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 173455 173455 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C78%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 202296 202296 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C2.2e-09%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C221:30 scaffold1469 SAMTools SNP 203270 203270 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.61%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1469 SAMTools SNP 203304 203304 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0052%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1469 SAMTools SNP 205518 205518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 206317 206317 15.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1469 SAMTools SNP 206392 206392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 207778 207778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1469 SAMTools SNP 207963 207963 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1469 SAMTools SNP 216395 216395 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 219342 219342 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1469 SAMTools SNP 219361 219361 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1469 SAMTools SNP 225425 225425 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1469 SAMTools SNP 225600 225600 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C250:99 scaffold1469 SAMTools SNP 225724 225724 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1469 SAMTools SNP 228456 228456 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C148:99 scaffold1469 SAMTools SNP 228468 228468 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1469 SAMTools SNP 233200 233200 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C223:84 scaffold1469 SAMTools SNP 233267 233267 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.013%2C3.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C174:99 scaffold1469 SAMTools SNP 245579 245579 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold1469 SAMTools SNP 245843 245843 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 245846 245846 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 250236 250236 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1469 SAMTools SNP 250265 250265 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1469 SAMTools SNP 251481 251481 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1469 SAMTools SNP 251493 251493 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0059%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.049%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1469 SAMTools SNP 251983 251983 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1469 SAMTools SNP 252346 252346 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1469 SAMTools SNP 253207 253207 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1469 SAMTools SNP 253286 253286 48 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold1469 SAMTools SNP 253306 253306 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1469 SAMTools SNP 254881 254881 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 254930 254930 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 254977 254977 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 258031 258031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C222%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 258048 258048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C95%2C63%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 258283 258283 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1469 SAMTools SNP 258286 258286 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C39%2C11%3BMQ%3D50%3BFQ%3D-105%3BPV4%3D0.41%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1469 SAMTools SNP 258334 258334 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 258482 258482 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C54%2C44%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D2.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1469 SAMTools SNP 258500 258500 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C21%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-07%2C1.6e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 258515 258515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C119%2C36%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C1%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 258797 258797 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1459%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.45%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C0:3 scaffold1469 SAMTools SNP 258976 258976 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.062%2C0.0021%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1469 SAMTools SNP 259650 259650 114 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C255%2C0:99 scaffold1469 SAMTools SNP 259791 259791 66.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold1469 SAMTools SNP 259833 259833 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0141%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D4%2C1%2C12%2C30%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C13:16 scaffold1469 SAMTools SNP 259877 259877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C60%3BMQ%3D50%3BFQ%3D-181%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1469 SAMTools SNP 262164 262164 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C17%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C241:99 scaffold1469 SAMTools SNP 262178 262178 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C241:99 scaffold1469 SAMTools SNP 266531 266531 20.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1469 SAMTools SNP 267574 267574 30.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1469 SAMTools SNP 267736 267736 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1469 SAMTools SNP 270527 270527 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1469 SAMTools SNP 277369 277369 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1469 SAMTools SNP 284475 284475 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1469 SAMTools SNP 288062 288062 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C18%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.00017%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 288633 288633 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C203:99 scaffold1469 SAMTools SNP 293534 293534 185 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D1854%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C105%2C0%2C215%2C63%2C206:99 scaffold1469 SAMTools SNP 293739 293739 70.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D835%3BVDB%3D0.0057%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.27%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C9:12 scaffold1469 SAMTools SNP 293807 293807 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1469 SAMTools SNP 293909 293909 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D137%2C11%2C12%2C9%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D9e-05%2C3.1e-49%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1469 SAMTools SNP 294137 294137 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D868%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C251%2C187%2C214%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.01%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1469 SAMTools SNP 294443 294443 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D653%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C196%2C177%2C263%3BMQ%3D50%3BFQ%3D99%3BPV4%3D8e-32%2C0%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C174:99 scaffold1469 SAMTools SNP 294455 294455 138 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D634%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C75%2C0%2C172%2C62%2C169:99 scaffold1469 SAMTools SNP 294530 294530 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C45%2C0:87 scaffold1469 SAMTools SNP 294673 294673 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0396%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C18:21 scaffold1469 SAMTools SNP 295220 295220 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1469 SAMTools SNP 303392 303392 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C3.1e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C134:60 scaffold1469 SAMTools SNP 303488 303488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1469 SAMTools SNP 303799 303799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1417%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1326%2C90%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 303816 303816 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1382%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1293%2C88%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 303863 303863 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold1469 SAMTools SNP 303933 303933 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2834%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1390%2C135%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 304389 304389 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1580%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1010%2C183%2C257%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-14%2C0.057%2C1%2C2.7e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 304467 304467 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2242%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C654%2C1582%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0018%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 304515 304515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2181%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D528%2C916%2C542%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-85%2C5.6e-06%2C0.00026%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 304721 304721 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1669%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C519%2C74%2C206%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C0.0012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 304748 304748 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1500%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D202%2C488%2C89%2C164%3BMQ%3D49%3BFQ%3D188%3BPV4%3D0.095%2C9.7e-113%2C8.3e-08%2C3.9e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1469 SAMTools SNP 305104 305104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C388%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 305434 305434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C346%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 305437 305437 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C291%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C4.1e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 305449 305449 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C136:99 scaffold1469 SAMTools SNP 305593 305593 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1791%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C1368%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 305596 305596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2000%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C200%2C1571%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.3%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 315658 315658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C37%2C25%2C56%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.045%2C1%2C0.48%2C3.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 315700 315700 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C74%2C11%2C61%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.066%2C1%2C0.18%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 315946 315946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C29%2C10%2C31%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.033%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 315994 315994 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C27%2C0%2C13%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0024%2C1%2C1%2C1.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1469 SAMTools SNP 316000 316000 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C25%2C2%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.45%2C8e-11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1469 SAMTools SNP 317154 317154 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C26%2C21%2C8%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 317340 317340 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5.7e-15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1469 SAMTools SNP 323281 323281 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C99%2C0:99 scaffold1469 SAMTools SNP 323740 323740 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C20%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1469 SAMTools SNP 323816 323816 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.091%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 324842 324842 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold1469 SAMTools SNP 325121 325121 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C30%2C0:57 scaffold1469 SAMTools SNP 325725 325725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1469 SAMTools SNP 325954 325954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C14%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1469 SAMTools SNP 325987 325987 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1469 SAMTools SNP 326053 326053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1469 SAMTools SNP 326103 326103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1469 SAMTools SNP 326774 326774 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 327001 327001 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.037%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1469 SAMTools SNP 327016 327016 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1469 SAMTools SNP 327240 327240 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.017%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 327586 327586 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C8%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.00037%2C2.9e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1469 SAMTools SNP 328549 328549 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold1469 SAMTools SNP 328585 328585 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1469 SAMTools SNP 328586 328586 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.033%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C222:68 scaffold1469 SAMTools SNP 328588 328588 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1469 SAMTools SNP 328745 328745 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.5%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 328977 328977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C28%2C26%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 329031 329031 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C36%2C10%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.42%2C1.4e-12%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1469 SAMTools SNP 329094 329094 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 329348 329348 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1469 SAMTools SNP 329408 329408 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1469 SAMTools SNP 329416 329416 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1469 SAMTools SNP 329440 329440 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1469 SAMTools SNP 329729 329729 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold1469 SAMTools SNP 329798 329798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1469 SAMTools SNP 330280 330280 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.041%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1469 SAMTools SNP 330287 330287 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.027%2C0.018%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1469 SAMTools SNP 330726 330726 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0082%2C3.3e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1469 SAMTools SNP 330768 330768 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C240:99 scaffold1469 SAMTools SNP 330794 330794 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold1469 SAMTools SNP 335509 335509 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1469 SAMTools SNP 335632 335632 8.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1469 SAMTools SNP 335668 335668 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1469 SAMTools SNP 335674 335674 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1469 SAMTools SNP 335688 335688 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1469 SAMTools SNP 335831 335831 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1469 SAMTools SNP 335852 335852 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1469 SAMTools SNP 336214 336214 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1469 SAMTools SNP 336729 336729 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1469 SAMTools SNP 337006 337006 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1469 SAMTools SNP 337049 337049 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1469 SAMTools SNP 337144 337144 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 337462 337462 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C0%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.55%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1469 SAMTools SNP 337695 337695 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1469 SAMTools SNP 337835 337835 115 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.031%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1469 SAMTools SNP 338155 338155 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold1469 SAMTools SNP 338164 338164 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1469 SAMTools SNP 338183 338183 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1469 SAMTools SNP 338197 338197 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.068%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1469 SAMTools SNP 341618 341618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1469 SAMTools SNP 343394 343394 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 344582 344582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 344600 344600 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1469 SAMTools SNP 347401 347401 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1469 SAMTools SNP 347463 347463 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1469 SAMTools SNP 348531 348531 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1469 SAMTools SNP 349151 349151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.33%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1469 SAMTools SNP 349509 349509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1469 SAMTools SNP 349552 349552 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.02%2C0.00017%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1469 SAMTools SNP 349944 349944 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C189:99 scaffold1469 SAMTools SNP 349961 349961 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1469 SAMTools SNP 360676 360676 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C123%2C0:99 scaffold1469 SAMTools SNP 360911 360911 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C4%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1469 SAMTools SNP 360912 360912 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C4%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1469 SAMTools SNP 362332 362332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1469 SAMTools SNP 364959 364959 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C216:99 scaffold1469 SAMTools SNP 375402 375402 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1470 SAMTools SNP 107 107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1470 SAMTools SNP 136 136 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1470 SAMTools SNP 1101 1101 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C148:76 scaffold1470 SAMTools SNP 5604 5604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1470 SAMTools SNP 5878 5878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1470 SAMTools SNP 5934 5934 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1470 SAMTools SNP 5977 5977 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1470 SAMTools SNP 6299 6299 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1470 SAMTools SNP 6359 6359 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1470 SAMTools SNP 7188 7188 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1470 SAMTools SNP 7211 7211 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1470 SAMTools SNP 9700 9700 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1470 SAMTools SNP 38781 38781 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C36%2C0:66 scaffold1470 SAMTools SNP 60854 60854 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1470 SAMTools SNP 66755 66755 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1470 SAMTools SNP 66799 66799 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C24%2C0:45 scaffold1470 SAMTools SNP 67004 67004 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D37%3BPV4%3D0.17%2C0.00015%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C191:67 scaffold1470 SAMTools SNP 67981 67981 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C57%2C0:96 scaffold1473 SAMTools SNP 23526 23526 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1473 SAMTools SNP 23542 23542 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1473 SAMTools SNP 24077 24077 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1473 SAMTools SNP 26874 26874 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1473 SAMTools SNP 26937 26937 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1473 SAMTools SNP 33579 33579 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.47%2C0.045%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C227:64 scaffold1473 SAMTools SNP 33861 33861 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1473 SAMTools SNP 40098 40098 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C18%2C0:33 scaffold1475 SAMTools SNP 1758 1758 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.31%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C140:71 scaffold1475 SAMTools SNP 10177 10177 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1475 SAMTools SNP 13039 13039 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1475 SAMTools SNP 13095 13095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1475 SAMTools SNP 13396 13396 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C24%2C0%3BMQ%3D30%3BFQ%3D-60%3BPV4%3D1%2C0.074%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C33%2C0:63 scaffold1475 SAMTools SNP 13925 13925 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1475 SAMTools SNP 13958 13958 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C3%3BMQ%3D35%3BFQ%3D-19%3BPV4%3D1%2C0.37%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C8:11 scaffold1475 SAMTools SNP 16904 16904 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C32%2C159%2C3%3BMQ%3D18%3BFQ%3D-113%3BPV4%3D9.8e-26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C86%2C0:99 scaffold1475 SAMTools SNP 17176 17176 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C191%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C255%2C0:99 scaffold1475 SAMTools SNP 17464 17464 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C51%2C0%3BMQ%3D38%3BFQ%3D77%3BPV4%3D1%2C1%2C0.0027%2C7.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C104:99 scaffold1475 SAMTools SNP 17822 17822 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C67%3BMQ%3D44%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1475 SAMTools SNP 18060 18060 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D43%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1475 SAMTools SNP 21560 21560 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1475 SAMTools SNP 21907 21907 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D12%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C60%2C0:66 scaffold1475 SAMTools SNP 22089 22089 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C13%2C0%3BMQ%3D37%3BFQ%3D71%3BPV4%3D0.00078%2C4.6e-10%2C0.48%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1475 SAMTools SNP 22322 22322 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C45%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0096%2C0.26%2C0.0023%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1475 SAMTools SNP 22430 22430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1475 SAMTools SNP 22606 22606 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C89%2C5%2C162%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.67%2C1%2C0.12%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1475 SAMTools SNP 22629 22629 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C80%2C0%2C10%3BMQ%3D49%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C192:34 scaffold1475 SAMTools SNP 22900 22900 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C5%3BMQ%3D47%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1475 SAMTools SNP 22937 22937 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C27%2C0:51 scaffold1475 SAMTools SNP 22996 22996 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1475 SAMTools SNP 24498 24498 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1475 SAMTools SNP 24586 24586 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold1475 SAMTools SNP 105684 105684 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1475 SAMTools SNP 108119 108119 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1475 SAMTools SNP 111224 111224 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1475 SAMTools SNP 111236 111236 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold1475 SAMTools SNP 133141 133141 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1475 SAMTools SNP 134259 134259 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1475 SAMTools SNP 135619 135619 82.5 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C15%2C3%2C110%2C0%2C107:21 scaffold1475 SAMTools SNP 135621 135621 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C0.016%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C159:30 scaffold1475 SAMTools SNP 136401 136401 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1475 SAMTools SNP 136537 136537 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C2.9e-06%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C222:34 scaffold1475 SAMTools SNP 138155 138155 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1475 SAMTools SNP 140708 140708 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1.8e-06%2C3.3e-06%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1475 SAMTools SNP 141363 141363 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 351 351 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 517 517 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 529 529 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 4928 4928 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 11477 11477 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C2%2C64%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C8.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C197:97 scaffold1476 SAMTools SNP 13636 13636 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 13825 13825 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 29138 29138 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1476 SAMTools SNP 89592 89592 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 100178 100178 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 110546 110546 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.02%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1476 SAMTools SNP 115916 115916 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1476 SAMTools SNP 119468 119468 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C4.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C221:55 scaffold1476 SAMTools SNP 120125 120125 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold1476 SAMTools SNP 122962 122962 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold1476 SAMTools SNP 124315 124315 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C8:75 scaffold1476 SAMTools SNP 124337 124337 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C247:99 scaffold1476 SAMTools SNP 124406 124406 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C24%2C0:45 scaffold1476 SAMTools SNP 126586 126586 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold1476 SAMTools SNP 127265 127265 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 129241 129241 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold1476 SAMTools SNP 134252 134252 143 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C18%2C0%2C168%2C1%2C165:33 scaffold1476 SAMTools SNP 134266 134266 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1476 SAMTools SNP 134290 134290 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1476 SAMTools SNP 134705 134705 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1476 SAMTools SNP 135122 135122 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1476 SAMTools SNP 135528 135528 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1476 SAMTools SNP 135739 135739 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1476 SAMTools SNP 135796 135796 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1476 SAMTools SNP 136434 136434 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1476 SAMTools SNP 136443 136443 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1476 SAMTools SNP 136533 136533 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 136791 136791 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1476 SAMTools SNP 136946 136946 38.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1476 SAMTools SNP 136980 136980 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C60%2C0:99 scaffold1476 SAMTools SNP 145377 145377 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.2%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C193:61 scaffold1476 SAMTools SNP 146737 146737 68.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold1476 SAMTools SNP 146879 146879 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.036%2C7.3e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C135:99 scaffold1476 SAMTools SNP 147423 147423 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C200:99 scaffold1476 SAMTools SNP 147453 147453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C12%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.0016%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1476 SAMTools SNP 147477 147477 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1476 SAMTools SNP 147785 147785 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1476 SAMTools SNP 148338 148338 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1476 SAMTools SNP 148386 148386 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1476 SAMTools SNP 149140 149140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.16%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 149160 149160 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 151074 151074 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C18%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C4.1e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 151657 151657 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1476 SAMTools SNP 152528 152528 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.39%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1476 SAMTools SNP 159749 159749 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1476 SAMTools SNP 162420 162420 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C11%3BMQ%3D50%3BFQ%3D-130;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C152:99 scaffold1476 SAMTools SNP 163746 163746 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 163757 163757 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 167998 167998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1476 SAMTools SNP 168016 168016 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C235:91 scaffold1476 SAMTools SNP 168185 168185 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1476 SAMTools SNP 168395 168395 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1476 SAMTools SNP 168585 168585 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1476 SAMTools SNP 168635 168635 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1476 SAMTools SNP 216317 216317 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D3.1e-05%2C0.22%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1476 SAMTools SNP 216391 216391 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1476 SAMTools SNP 220334 220334 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1476 SAMTools SNP 222331 222331 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1476 SAMTools SNP 227669 227669 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1476 SAMTools SNP 229897 229897 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.21%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1476 SAMTools SNP 230832 230832 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C231:93 scaffold1476 SAMTools SNP 235228 235228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 235541 235541 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1476 SAMTools SNP 235665 235665 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 235676 235676 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C12%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 236851 236851 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C10%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C9.8e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 240632 240632 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C19%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00047%2C0.19%2C1%2C1.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1476 SAMTools SNP 240662 240662 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1476 SAMTools SNP 241287 241287 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1476 SAMTools SNP 241438 241438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1476 SAMTools SNP 241464 241464 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1476 SAMTools SNP 242593 242593 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.49%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1476 SAMTools SNP 242649 242649 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1476 SAMTools SNP 242926 242926 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold148 SAMTools SNP 6577 6577 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold148 SAMTools SNP 6642 6642 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold148 SAMTools SNP 7708 7708 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold148 SAMTools SNP 7791 7791 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold148 SAMTools SNP 36897 36897 35.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold148 SAMTools SNP 102535 102535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold148 SAMTools SNP 103204 103204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 103207 103207 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.45%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 103433 103433 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold148 SAMTools SNP 103449 103449 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold148 SAMTools SNP 103877 103877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 103952 103952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 105914 105914 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.42%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C239:59 scaffold148 SAMTools SNP 129473 129473 16.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold148 SAMTools SNP 150024 150024 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold148 SAMTools SNP 153921 153921 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold148 SAMTools SNP 154427 154427 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold148 SAMTools SNP 155191 155191 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold148 SAMTools SNP 155471 155471 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold148 SAMTools SNP 155492 155492 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold148 SAMTools SNP 155567 155567 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold148 SAMTools SNP 155834 155834 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C6.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold148 SAMTools SNP 155863 155863 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold148 SAMTools SNP 155890 155890 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold148 SAMTools SNP 156184 156184 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold148 SAMTools SNP 156243 156243 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold148 SAMTools SNP 156509 156509 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold148 SAMTools SNP 158341 158341 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold148 SAMTools SNP 159690 159690 116 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold148 SAMTools SNP 160000 160000 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold148 SAMTools SNP 160336 160336 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold148 SAMTools SNP 160350 160350 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D48%3BFQ%3D21%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold148 SAMTools SNP 161295 161295 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold148 SAMTools SNP 161494 161494 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold148 SAMTools SNP 161931 161931 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C5%2C0%3BMQ%3D48%3BFQ%3D22%3BPV4%3D0.0098%2C8.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold148 SAMTools SNP 162188 162188 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.12%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold148 SAMTools SNP 162217 162217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold148 SAMTools SNP 162584 162584 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold148 SAMTools SNP 162654 162654 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.3%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold148 SAMTools SNP 163107 163107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C13%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold148 SAMTools SNP 166394 166394 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1498%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D653%2C124%2C507%2C199%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-08%2C1%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 166525 166525 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C9.4e-05%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C112:56 scaffold148 SAMTools SNP 168630 168630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2278%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C650%2C1010%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold148 SAMTools SNP 168678 168678 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold148 SAMTools SNP 168888 168888 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2197%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D464%2C749%2C295%2C670%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C0.19%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 169118 169118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D621%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C537%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold148 SAMTools SNP 173681 173681 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold148 SAMTools SNP 173710 173710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold148 SAMTools SNP 173749 173749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C7%2C61%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.13%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 174486 174486 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 174498 174498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C80%2C8%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.012%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 174550 174550 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C90%2C6%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0027%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold148 SAMTools SNP 176046 176046 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold148 SAMTools SNP 176106 176106 23.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold148 SAMTools SNP 194155 194155 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold148 SAMTools SNP 194167 194167 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C235:99 scaffold148 SAMTools SNP 194176 194176 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.32%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold148 SAMTools SNP 194227 194227 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold148 SAMTools SNP 194236 194236 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C40%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold148 SAMTools SNP 194478 194478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C64%2C11%3BMQ%3D50%3BFQ%3D51%3BPV4%3D7.6e-09%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C78:81 scaffold148 SAMTools SNP 194502 194502 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold148 SAMTools SNP 194505 194505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold148 SAMTools SNP 195590 195590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C64%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold148 SAMTools SNP 196694 196694 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C100%2C33%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D2.1e-12%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold148 SAMTools SNP 197407 197407 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C78%2C0%2C41%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold148 SAMTools SNP 197430 197430 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C11%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C2.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C235:99 scaffold148 SAMTools SNP 209744 209744 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold148 SAMTools SNP 209750 209750 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1480 SAMTools SNP 2865 2865 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1480 SAMTools SNP 2925 2925 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1480 SAMTools SNP 60301 60301 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1480 SAMTools SNP 158150 158150 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1480 SAMTools SNP 188170 188170 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D41%3BFQ%3D5.47%3BPV4%3D0.49%2C0.21%2C1.5e-05%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1480 SAMTools SNP 188609 188609 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1480 SAMTools SNP 188630 188630 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.015%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1480 SAMTools SNP 188632 188632 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1480 SAMTools SNP 188681 188681 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C251:99 scaffold1480 SAMTools SNP 190095 190095 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1480 SAMTools SNP 198677 198677 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1480 SAMTools SNP 199187 199187 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1481 SAMTools SNP 2180 2180 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1481 SAMTools SNP 2344 2344 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1481 SAMTools SNP 2554 2554 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1481 SAMTools SNP 2557 2557 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1481 SAMTools SNP 3477 3477 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1481 SAMTools SNP 3489 3489 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1481 SAMTools SNP 4900 4900 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C35:38 scaffold1481 SAMTools SNP 19595 19595 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C209%2C176:63 scaffold1481 SAMTools SNP 21678 21678 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C0.13%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1481 SAMTools SNP 21707 21707 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.27%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1481 SAMTools SNP 22665 22665 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1481 SAMTools SNP 23214 23214 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C15:18 scaffold1481 SAMTools SNP 23226 23226 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1481 SAMTools SNP 24460 24460 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0045%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold1481 SAMTools SNP 27947 27947 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1481 SAMTools SNP 30224 30224 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1481 SAMTools SNP 30238 30238 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1481 SAMTools SNP 36045 36045 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1481 SAMTools SNP 75965 75965 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 4784 4784 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold1484 SAMTools SNP 13023 13023 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1484 SAMTools SNP 13334 13334 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1484 SAMTools SNP 13547 13547 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C27%2C0:51 scaffold1484 SAMTools SNP 13882 13882 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C24%2C0:45 scaffold1484 SAMTools SNP 20216 20216 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 20223 20223 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 30044 30044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 30046 30046 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 36895 36895 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1484 SAMTools SNP 36918 36918 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.077%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1484 SAMTools SNP 38982 38982 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C0.071%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C127:79 scaffold1484 SAMTools SNP 44933 44933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.55%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold1484 SAMTools SNP 45466 45466 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C249:99 scaffold1484 SAMTools SNP 45659 45659 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1484 SAMTools SNP 45670 45670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1484 SAMTools SNP 45700 45700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 45922 45922 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 46302 46302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 46585 46585 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1484 SAMTools SNP 46639 46639 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1484 SAMTools SNP 46939 46939 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1484 SAMTools SNP 47258 47258 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 47570 47570 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 47768 47768 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 48308 48308 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1484 SAMTools SNP 48663 48663 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1484 SAMTools SNP 48717 48717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1484 SAMTools SNP 49166 49166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1484 SAMTools SNP 49202 49202 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1484 SAMTools SNP 49557 49557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C12%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1484 SAMTools SNP 49686 49686 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold1484 SAMTools SNP 49971 49971 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1484 SAMTools SNP 50444 50444 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1484 SAMTools SNP 50451 50451 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1484 SAMTools SNP 50495 50495 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.023%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1484 SAMTools SNP 50496 50496 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.27%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1484 SAMTools SNP 51011 51011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1484 SAMTools SNP 51791 51791 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 51838 51838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1484 SAMTools SNP 51856 51856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C15%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1484 SAMTools SNP 52209 52209 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1484 SAMTools SNP 52278 52278 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C238:99 scaffold1484 SAMTools SNP 52798 52798 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D195%3BPV4%3D8.4e-09%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C222:99 scaffold1484 SAMTools SNP 52852 52852 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1484 SAMTools SNP 52882 52882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1484 SAMTools SNP 52975 52975 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.12%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1484 SAMTools SNP 53433 53433 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1484 SAMTools SNP 53466 53466 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 64031 64031 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1484 SAMTools SNP 71008 71008 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1484 SAMTools SNP 71025 71025 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1484 SAMTools SNP 71300 71300 47.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold1484 SAMTools SNP 72000 72000 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1484 SAMTools SNP 74814 74814 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1484 SAMTools SNP 74843 74843 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1484 SAMTools SNP 92577 92577 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1064%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C310%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1484 SAMTools SNP 92580 92580 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D917%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C30%2C311%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1484 SAMTools SNP 92607 92607 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1996%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C955%2C85%2C793%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 93214 93214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C61%2C44%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C0.22%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 164120 164120 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1484 SAMTools SNP 195384 195384 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1484 SAMTools SNP 195452 195452 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 195819 195819 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 196485 196485 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 196981 196981 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold1484 SAMTools SNP 198473 198473 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C107:36 scaffold1484 SAMTools SNP 198576 198576 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold1484 SAMTools SNP 198600 198600 131 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C94%2C82%2C163%2C0%2C157:21 scaffold1484 SAMTools SNP 198928 198928 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold1484 SAMTools SNP 223767 223767 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1484 SAMTools SNP 223804 223804 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1484 SAMTools SNP 225951 225951 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1484 SAMTools SNP 240458 240458 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C15%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1.1e-06%2C1e-07%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1484 SAMTools SNP 314027 314027 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1484 SAMTools SNP 316003 316003 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1484 SAMTools SNP 316168 316168 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold1484 SAMTools SNP 317331 317331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1484 SAMTools SNP 317349 317349 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1484 SAMTools SNP 318210 318210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1484 SAMTools SNP 319126 319126 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1484 SAMTools SNP 319147 319147 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1484 SAMTools SNP 319204 319204 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 319584 319584 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1484 SAMTools SNP 319644 319644 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1484 SAMTools SNP 323815 323815 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D555%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C538%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1484 SAMTools SNP 326740 326740 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1484 SAMTools SNP 329636 329636 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1484 SAMTools SNP 329947 329947 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C72%2C0:99 scaffold1484 SAMTools SNP 330003 330003 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C13%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C6.4e-38%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C247:43 scaffold1484 SAMTools SNP 344346 344346 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.011%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1484 SAMTools SNP 344721 344721 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C9.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C166:51 scaffold1484 SAMTools SNP 346517 346517 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1485 SAMTools SNP 3637 3637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1485 SAMTools SNP 3678 3678 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1485 SAMTools SNP 3911 3911 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1485 SAMTools SNP 5603 5603 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C255%2C0:99 scaffold1485 SAMTools SNP 5618 5618 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C71%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C235%2C0:99 scaffold1485 SAMTools SNP 5695 5695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1485 SAMTools SNP 5715 5715 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1485 SAMTools SNP 5978 5978 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1485 SAMTools SNP 5987 5987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1485 SAMTools SNP 6012 6012 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C15%2C9%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.19%2C0.23%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1485 SAMTools SNP 8086 8086 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C76:79 scaffold1485 SAMTools SNP 22935 22935 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1485 SAMTools SNP 22945 22945 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C80%2C0%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.26%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C129:99 scaffold1485 SAMTools SNP 23084 23084 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C1%2C92%2C1%3BMQ%3D44%3BFQ%3D147%3BPV4%3D1%2C1%2C8.9e-30%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1485 SAMTools SNP 23164 23164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C224%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1485 SAMTools SNP 23748 23748 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C30%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1485 SAMTools SNP 23749 23749 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D124%2C30%2C10%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1485 SAMTools SNP 28704 28704 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C65%2C0%2C23%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1485 SAMTools SNP 29996 29996 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C8%2C5%3BMQ%3D39%3BFQ%3D95%3BPV4%3D0.1%2C1%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C235:99 scaffold1485 SAMTools SNP 30094 30094 65 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C3%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C255%2C0%2C95%2C255%2C92:99 scaffold1485 SAMTools SNP 30158 30158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C81%2C230%2C7%3BMQ%3D45%3BFQ%3D-61%3BPV4%3D5.3e-68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1485 SAMTools SNP 30988 30988 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C55%2C0%3BMQ%3D49%3BFQ%3D127%3BPV4%3D0.4%2C0.00065%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C189:99 scaffold1485 SAMTools SNP 31006 31006 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C0.055%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C225:48 scaffold1485 SAMTools SNP 31076 31076 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C289%2C6%2C242%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.34%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1485 SAMTools SNP 31365 31365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C15%2C43%2C35%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1485 SAMTools SNP 31623 31623 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C30%2C27%2C37%3BMQ%3D39%3BFQ%3D225%3BPV4%3D1%2C1%2C0.38%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1485 SAMTools SNP 31752 31752 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C52%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C255%2C0:99 scaffold1485 SAMTools SNP 31800 31800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1485 SAMTools SNP 32244 32244 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1485 SAMTools SNP 32639 32639 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C1%2C56%3BMQ%3D47%3BFQ%3D211%3BPV4%3D1%2C7.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1485 SAMTools SNP 36346 36346 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1485 SAMTools SNP 39845 39845 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C12%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.61%2C4.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1485 SAMTools SNP 39908 39908 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1485 SAMTools SNP 40099 40099 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold1485 SAMTools SNP 40789 40789 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C127:44 scaffold1485 SAMTools SNP 45529 45529 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1486 SAMTools SNP 5721 5721 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1486 SAMTools SNP 5798 5798 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1486 SAMTools SNP 70292 70292 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold1486 SAMTools SNP 70809 70809 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.039%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1486 SAMTools SNP 70844 70844 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1486 SAMTools SNP 72672 72672 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1486 SAMTools SNP 72693 72693 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 22711 22711 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 22787 22787 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 22811 22811 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 22833 22833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 36796 36796 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1488 SAMTools SNP 36820 36820 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1488 SAMTools SNP 48052 48052 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1488 SAMTools SNP 48451 48451 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1488 SAMTools SNP 49227 49227 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1488 SAMTools SNP 94475 94475 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1488 SAMTools SNP 94923 94923 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1488 SAMTools SNP 94964 94964 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1488 SAMTools SNP 95158 95158 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold1488 SAMTools SNP 107045 107045 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1488 SAMTools SNP 107078 107078 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1488 SAMTools SNP 107129 107129 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1488 SAMTools SNP 107132 107132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1488 SAMTools SNP 107631 107631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1488 SAMTools SNP 107679 107679 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1488 SAMTools SNP 109021 109021 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1488 SAMTools SNP 109043 109043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1488 SAMTools SNP 109078 109078 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1488 SAMTools SNP 109301 109301 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C10%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1488 SAMTools SNP 109374 109374 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.2%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C191:30 scaffold1488 SAMTools SNP 109380 109380 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1488 SAMTools SNP 111420 111420 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1488 SAMTools SNP 111985 111985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C0.005%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1488 SAMTools SNP 112005 112005 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C46%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1488 SAMTools SNP 112086 112086 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1488 SAMTools SNP 112344 112344 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C47%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1488 SAMTools SNP 112909 112909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.19%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1488 SAMTools SNP 113114 113114 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 113150 113150 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1488 SAMTools SNP 113755 113755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1488 SAMTools SNP 113778 113778 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1488 SAMTools SNP 113963 113963 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1488 SAMTools SNP 114252 114252 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1488 SAMTools SNP 115132 115132 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold1488 SAMTools SNP 115138 115138 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1488 SAMTools SNP 116616 116616 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1488 SAMTools SNP 116721 116721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1488 SAMTools SNP 117780 117780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1488 SAMTools SNP 118078 118078 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C24%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1488 SAMTools SNP 118682 118682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1488 SAMTools SNP 118793 118793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1488 SAMTools SNP 118893 118893 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1488 SAMTools SNP 119141 119141 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1489 SAMTools SNP 308 308 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 340 340 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 382 382 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 19174 19174 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 19194 19194 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 41475 41475 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1489 SAMTools SNP 41499 41499 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1489 SAMTools SNP 42976 42976 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 43049 43049 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1489 SAMTools SNP 44714 44714 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1489 SAMTools SNP 82234 82234 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1489 SAMTools SNP 93565 93565 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.024%2C1.7e-12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1489 SAMTools SNP 93619 93619 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C1%2C10%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1489 SAMTools SNP 95044 95044 46.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1489 SAMTools SNP 95169 95169 52.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1489 SAMTools SNP 95290 95290 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C108%2C0:99 scaffold1489 SAMTools SNP 105875 105875 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1489 SAMTools SNP 106091 106091 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold1489 SAMTools SNP 108385 108385 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1489 SAMTools SNP 108406 108406 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C18%2C0:33 scaffold1489 SAMTools SNP 108428 108428 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C45%2C0:87 scaffold1489 SAMTools SNP 109025 109025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold149 SAMTools SNP 2917 2917 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold149 SAMTools SNP 2973 2973 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold149 SAMTools SNP 5033 5033 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold149 SAMTools SNP 5305 5305 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold149 SAMTools SNP 5354 5354 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold149 SAMTools SNP 5362 5362 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold149 SAMTools SNP 7341 7341 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold149 SAMTools SNP 7342 7342 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold149 SAMTools SNP 7382 7382 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 7433 7433 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 7603 7603 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 7642 7642 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold149 SAMTools SNP 8326 8326 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold149 SAMTools SNP 8392 8392 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D41.9%3BPV4%3D0.036%2C0.0001%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C69:72 scaffold149 SAMTools SNP 8455 8455 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C2e-09%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C76:59 scaffold149 SAMTools SNP 9243 9243 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 9681 9681 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 9727 9727 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold149 SAMTools SNP 9776 9776 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 25680 25680 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold149 SAMTools SNP 61247 61247 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C162:99 scaffold149 SAMTools SNP 61255 61255 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C234:85 scaffold149 SAMTools SNP 61925 61925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.43%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold149 SAMTools SNP 63427 63427 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C234:85 scaffold149 SAMTools SNP 63451 63451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold149 SAMTools SNP 69050 69050 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C93%2C0:99 scaffold149 SAMTools SNP 69110 69110 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C93%2C0:99 scaffold149 SAMTools SNP 69159 69159 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold149 SAMTools SNP 78359 78359 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 78800 78800 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold149 SAMTools SNP 78812 78812 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 82644 82644 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.33%2C6.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold149 SAMTools SNP 83373 83373 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold149 SAMTools SNP 83672 83672 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.0017%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold149 SAMTools SNP 83936 83936 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.62%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold149 SAMTools SNP 84029 84029 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00052%2C0.47%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold149 SAMTools SNP 84065 84065 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C197:99 scaffold149 SAMTools SNP 98709 98709 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold149 SAMTools SNP 98715 98715 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 98808 98808 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold149 SAMTools SNP 101153 101153 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C80:34 scaffold149 SAMTools SNP 101205 101205 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold149 SAMTools SNP 101210 101210 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold149 SAMTools SNP 101498 101498 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C42%2C0:81 scaffold149 SAMTools SNP 101729 101729 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold149 SAMTools SNP 101861 101861 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C72%2C0:99 scaffold149 SAMTools SNP 102710 102710 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C22%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold149 SAMTools SNP 111576 111576 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 112427 112427 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold149 SAMTools SNP 112453 112453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold149 SAMTools SNP 113788 113788 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 113791 113791 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 114868 114868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 114925 114925 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 114952 114952 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 115413 115413 89.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C15%2C0:27 scaffold149 SAMTools SNP 116409 116409 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold149 SAMTools SNP 119156 119156 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold149 SAMTools SNP 121669 121669 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.37%2C3.1e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C158:99 scaffold149 SAMTools SNP 125318 125318 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C21%2C0:39 scaffold149 SAMTools SNP 126664 126664 52.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold149 SAMTools SNP 127528 127528 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.7e-08%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C243:48 scaffold149 SAMTools SNP 128325 128325 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold149 SAMTools SNP 128481 128481 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C252:99 scaffold149 SAMTools SNP 128493 128493 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C198:99 scaffold149 SAMTools SNP 128511 128511 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 130429 130429 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold149 SAMTools SNP 130477 130477 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 134996 134996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold149 SAMTools SNP 135029 135029 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.47%2C0.12%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C225:99 scaffold149 SAMTools SNP 153913 153913 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold149 SAMTools SNP 157472 157472 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C78%2C9%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.63%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold149 SAMTools SNP 157479 157479 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C78%2C7%2C11%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.79%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold149 SAMTools SNP 164920 164920 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold149 SAMTools SNP 175158 175158 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.56%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold149 SAMTools SNP 176414 176414 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 176467 176467 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.13%2C9.4e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold149 SAMTools SNP 176477 176477 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.28%2C2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold149 SAMTools SNP 177458 177458 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold149 SAMTools SNP 201910 201910 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold149 SAMTools SNP 259962 259962 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold149 SAMTools SNP 264325 264325 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 268656 268656 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold149 SAMTools SNP 285511 285511 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C238:55 scaffold149 SAMTools SNP 286961 286961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C244%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 287934 287934 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D48%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold149 SAMTools SNP 287943 287943 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C65%2C1%3BMQ%3D48%3BFQ%3D-179%3BPV4%3D0.03%2C0.3%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C0:99 scaffold149 SAMTools SNP 289712 289712 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C18%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold149 SAMTools SNP 289749 289749 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold149 SAMTools SNP 296388 296388 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold149 SAMTools SNP 296420 296420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold149 SAMTools SNP 296827 296827 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.018%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold149 SAMTools SNP 296881 296881 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.25%2C1.6e-14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold149 SAMTools SNP 297265 297265 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold149 SAMTools SNP 297316 297316 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 297620 297620 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 298031 298031 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold149 SAMTools SNP 301818 301818 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold149 SAMTools SNP 301977 301977 55.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold149 SAMTools SNP 308300 308300 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.045%2C1%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C244:99 scaffold149 SAMTools SNP 308338 308338 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C117%2C92%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 309267 309267 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D295%2C49%2C54%2C12%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.45%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold149 SAMTools SNP 309614 309614 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C107%2C257%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-25%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 309617 309617 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C107%2C254%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-24%2C9.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 309620 309620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D246%2C58%2C55%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 309721 309721 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D5%2C57%2C38%2C283%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.51%2C9.1e-219%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold149 SAMTools SNP 468549 468549 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 469128 469128 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 474791 474791 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold149 SAMTools SNP 474827 474827 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold149 SAMTools SNP 474870 474870 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold149 SAMTools SNP 484471 484471 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold149 SAMTools SNP 485068 485068 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 485373 485373 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold149 SAMTools SNP 488038 488038 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold149 SAMTools SNP 488054 488054 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold149 SAMTools SNP 488321 488321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 489688 489688 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold149 SAMTools SNP 489857 489857 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold149 SAMTools SNP 489890 489890 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.18%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C63:66 scaffold149 SAMTools SNP 490543 490543 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold149 SAMTools SNP 491350 491350 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold149 SAMTools SNP 491421 491421 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 496487 496487 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold149 SAMTools SNP 497197 497197 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold149 SAMTools SNP 500467 500467 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 500689 500689 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 500731 500731 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold149 SAMTools SNP 500901 500901 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.06%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold149 SAMTools SNP 500933 500933 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold149 SAMTools SNP 501360 501360 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 501367 501367 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 502041 502041 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold149 SAMTools SNP 503514 503514 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold149 SAMTools SNP 503559 503559 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold149 SAMTools SNP 503823 503823 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold149 SAMTools SNP 503824 503824 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold149 SAMTools SNP 503892 503892 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 526102 526102 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 527665 527665 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold149 SAMTools SNP 527704 527704 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold149 SAMTools SNP 543158 543158 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold149 SAMTools SNP 551467 551467 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C63:33 scaffold149 SAMTools SNP 557309 557309 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold149 SAMTools SNP 557470 557470 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.37%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C11:14 scaffold149 SAMTools SNP 557954 557954 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 562244 562244 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold149 SAMTools SNP 562884 562884 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold149 SAMTools SNP 565851 565851 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C37:40 scaffold149 SAMTools SNP 566287 566287 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 566398 566398 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C116%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 566438 566438 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C132%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 566689 566689 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold149 SAMTools SNP 584579 584579 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold149 SAMTools SNP 584581 584581 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C36:39 scaffold149 SAMTools SNP 585597 585597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 591204 591204 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold149 SAMTools SNP 592225 592225 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold149 SAMTools SNP 595545 595545 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold149 SAMTools SNP 595602 595602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 596197 596197 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold149 SAMTools SNP 596665 596665 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold149 SAMTools SNP 597210 597210 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold149 SAMTools SNP 597509 597509 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold149 SAMTools SNP 598922 598922 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 599448 599448 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold149 SAMTools SNP 601221 601221 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold149 SAMTools SNP 603186 603186 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold149 SAMTools SNP 603225 603225 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 675667 675667 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold149 SAMTools SNP 696322 696322 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.25%2C8.9e-12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold149 SAMTools SNP 696390 696390 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C48%2C63%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 696849 696849 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C56%2C56%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 696870 696870 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C55%2C14%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 697009 697009 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C1%2C24%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.047%2C1%2C0.086%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold149 SAMTools SNP 699028 699028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C292%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 699892 699892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 699945 699945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C176%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 699972 699972 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 704340 704340 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C45%2C0:87 scaffold149 SAMTools SNP 707734 707734 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.58%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold149 SAMTools SNP 709508 709508 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C3%2C4%3BMQ%3D49%3BFQ%3D149%3BPV4%3D1%2C0.0095%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold149 SAMTools SNP 709652 709652 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C3%2C4%3BMQ%3D49%3BFQ%3D162%3BPV4%3D0.12%2C0.42%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold149 SAMTools SNP 710854 710854 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C18%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.27%2C8.7e-09%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 711366 711366 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C3%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold149 SAMTools SNP 711868 711868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 711891 711891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold149 SAMTools SNP 711985 711985 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C19%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.15%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 712594 712594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C15%2C49%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 713478 713478 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.45%2C0.45%2C0.17%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 723302 723302 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold149 SAMTools SNP 734818 734818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 734821 734821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold149 SAMTools SNP 734923 734923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold149 SAMTools SNP 739525 739525 56.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold149 SAMTools SNP 739606 739606 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold149 SAMTools SNP 755983 755983 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold149 SAMTools SNP 766955 766955 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold149 SAMTools SNP 767025 767025 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold149 SAMTools SNP 767315 767315 85.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C0:39 scaffold149 SAMTools SNP 776397 776397 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 776759 776759 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold149 SAMTools SNP 779411 779411 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 782518 782518 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 782522 782522 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold149 SAMTools SNP 801640 801640 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold149 SAMTools SNP 801680 801680 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C69:31 scaffold149 SAMTools SNP 805884 805884 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C45%2C0:87 scaffold149 SAMTools SNP 805940 805940 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold149 SAMTools SNP 806685 806685 34.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold149 SAMTools SNP 806818 806818 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold149 SAMTools SNP 810048 810048 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold149 SAMTools SNP 810162 810162 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.24%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold149 SAMTools SNP 810346 810346 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold149 SAMTools SNP 810435 810435 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.49%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C233:99 scaffold149 SAMTools SNP 813503 813503 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C33%2C0:63 scaffold149 SAMTools SNP 814704 814704 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold149 SAMTools SNP 815037 815037 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C54%2C0:99 scaffold149 SAMTools SNP 815282 815282 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 815317 815317 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold149 SAMTools SNP 815925 815925 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C243:69 scaffold149 SAMTools SNP 816869 816869 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold149 SAMTools SNP 816979 816979 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.025%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold149 SAMTools SNP 817259 817259 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold149 SAMTools SNP 817286 817286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 818271 818271 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.2%2C6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold149 SAMTools SNP 818346 818346 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.082%2C0.017%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold149 SAMTools SNP 819122 819122 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C4%2C109%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.0048%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 820991 820991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 821145 821145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold149 SAMTools SNP 821352 821352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 822013 822013 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold149 SAMTools SNP 822070 822070 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold149 SAMTools SNP 822407 822407 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C3%2C3%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold149 SAMTools SNP 823041 823041 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C4.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C178:99 scaffold149 SAMTools SNP 825795 825795 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C27%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold149 SAMTools SNP 826929 826929 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.4%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold149 SAMTools SNP 829059 829059 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.52%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C193:72 scaffold149 SAMTools SNP 830362 830362 58.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold149 SAMTools SNP 830429 830429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold149 SAMTools SNP 831766 831766 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 831799 831799 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 832550 832550 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 832611 832611 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold149 SAMTools SNP 832710 832710 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C7%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0023%2C3.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C204:84 scaffold149 SAMTools SNP 832760 832760 39.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold149 SAMTools SNP 832852 832852 18.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold149 SAMTools SNP 833124 833124 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold149 SAMTools SNP 833813 833813 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 834780 834780 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold149 SAMTools SNP 834838 834838 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold149 SAMTools SNP 835482 835482 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold149 SAMTools SNP 835524 835524 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.066%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold149 SAMTools SNP 835688 835688 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold149 SAMTools SNP 835784 835784 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 836509 836509 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold149 SAMTools SNP 836857 836857 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.31%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold149 SAMTools SNP 836902 836902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold149 SAMTools SNP 837213 837213 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold149 SAMTools SNP 837477 837477 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold149 SAMTools SNP 837751 837751 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold149 SAMTools SNP 837759 837759 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold149 SAMTools SNP 838444 838444 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.24%2C0.27%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C238:99 scaffold149 SAMTools SNP 838462 838462 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C220:60 scaffold149 SAMTools SNP 838880 838880 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold149 SAMTools SNP 843752 843752 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.45%2C0.36%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold149 SAMTools SNP 843856 843856 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C42%2C0:81 scaffold149 SAMTools SNP 844186 844186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold149 SAMTools SNP 844505 844505 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold149 SAMTools SNP 845324 845324 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold149 SAMTools SNP 848260 848260 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold149 SAMTools SNP 861177 861177 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold149 SAMTools SNP 861310 861310 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold149 SAMTools SNP 861373 861373 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold149 SAMTools SNP 862589 862589 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold149 SAMTools SNP 862925 862925 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold149 SAMTools SNP 862961 862961 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.00011%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C230:39 scaffold149 SAMTools SNP 863828 863828 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C96:49 scaffold149 SAMTools SNP 865033 865033 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.09%2C0.42%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold149 SAMTools SNP 865323 865323 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold149 SAMTools SNP 866305 866305 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold149 SAMTools SNP 867409 867409 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold149 SAMTools SNP 869316 869316 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 897559 897559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C104%2C13%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.037%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 899177 899177 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold149 SAMTools SNP 899178 899178 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C3%2C3%3BMQ%3D49%3BFQ%3D88%3BPV4%3D0.031%2C6.5e-05%2C0.016%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold149 SAMTools SNP 899196 899196 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C25%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 899231 899231 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 900004 900004 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C99%2C34%2C60%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 900031 900031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C105%2C12%2C60%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.052%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 900801 900801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C172%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold149 SAMTools SNP 902126 902126 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C132%2C48%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 902684 902684 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C35%2C18%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 903174 903174 167 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C41%2C23%2C191%2C0%2C188:33 scaffold149 SAMTools SNP 905369 905369 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold149 SAMTools SNP 908370 908370 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold149 SAMTools SNP 911756 911756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold149 SAMTools SNP 912270 912270 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold149 SAMTools SNP 913439 913439 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold149 SAMTools SNP 915248 915248 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold149 SAMTools SNP 916279 916279 14.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold149 SAMTools SNP 918108 918108 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold149 SAMTools SNP 918117 918117 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold149 SAMTools SNP 918370 918370 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold149 SAMTools SNP 936480 936480 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold149 SAMTools SNP 936894 936894 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold149 SAMTools SNP 939136 939136 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold149 SAMTools SNP 939418 939418 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold149 SAMTools SNP 940245 940245 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00014%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C138:54 scaffold149 SAMTools SNP 940542 940542 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold149 SAMTools SNP 940614 940614 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold149 SAMTools SNP 940632 940632 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold149 SAMTools SNP 942340 942340 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold149 SAMTools SNP 944627 944627 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold149 SAMTools SNP 944995 944995 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C51%2C0:99 scaffold149 SAMTools SNP 945175 945175 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C236:99 scaffold149 SAMTools SNP 945191 945191 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.51%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold149 SAMTools SNP 946574 946574 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0125%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.051%2C0.027%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold149 SAMTools SNP 948323 948323 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold149 SAMTools SNP 948640 948640 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C27%2C0:51 scaffold1490 SAMTools SNP 1892 1892 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1490 SAMTools SNP 6149 6149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 36153 36153 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C196:42 scaffold1490 SAMTools SNP 36168 36168 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.18%2C0.0072%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C227:39 scaffold1490 SAMTools SNP 93233 93233 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D21%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C33%2C0:63 scaffold1490 SAMTools SNP 93443 93443 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1490 SAMTools SNP 93816 93816 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D17%2C0%2C16%2C2%3BMQ%3D15%3BFQ%3D3.02%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C27:30 scaffold1490 SAMTools SNP 93828 93828 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D9%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C96%2C0:57 scaffold1490 SAMTools SNP 119841 119841 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 137277 137277 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold1490 SAMTools SNP 137943 137943 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.33%2C3.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1490 SAMTools SNP 138193 138193 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C15%2C0:27 scaffold1490 SAMTools SNP 138374 138374 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1490 SAMTools SNP 138591 138591 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1490 SAMTools SNP 138678 138678 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1490 SAMTools SNP 140763 140763 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 143953 143953 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1490 SAMTools SNP 143965 143965 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1490 SAMTools SNP 144127 144127 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1490 SAMTools SNP 144171 144171 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1490 SAMTools SNP 144533 144533 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1490 SAMTools SNP 144543 144543 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1490 SAMTools SNP 144552 144552 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1490 SAMTools SNP 144558 144558 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1490 SAMTools SNP 145680 145680 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1490 SAMTools SNP 146528 146528 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1490 SAMTools SNP 146535 146535 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1490 SAMTools SNP 146612 146612 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 146661 146661 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1490 SAMTools SNP 153240 153240 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1490 SAMTools SNP 166244 166244 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C60%2C0:99 scaffold1490 SAMTools SNP 166692 166692 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C2%2C22%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.017%2C1.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1490 SAMTools SNP 166775 166775 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1490 SAMTools SNP 166779 166779 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1490 SAMTools SNP 167087 167087 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1490 SAMTools SNP 167110 167110 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1490 SAMTools SNP 170212 170212 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1490 SAMTools SNP 171640 171640 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1490 SAMTools SNP 172475 172475 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1490 SAMTools SNP 172698 172698 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.13%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1490 SAMTools SNP 173363 173363 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 173372 173372 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 173414 173414 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1490 SAMTools SNP 173456 173456 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1490 SAMTools SNP 173509 173509 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C4%3BMQ%3D48%3BFQ%3D115%3BPV4%3D0.23%2C0.21%2C0.25%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1490 SAMTools SNP 185346 185346 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 192570 192570 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C0%3BMQ%3D48%3BFQ%3D132%3BPV4%3D0.24%2C0.34%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1490 SAMTools SNP 192598 192598 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C3%3BMQ%3D49%3BFQ%3D137%3BPV4%3D0.53%2C1%2C0.26%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1490 SAMTools SNP 198371 198371 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C5%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D0.55%2C0.0008%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1490 SAMTools SNP 204619 204619 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1490 SAMTools SNP 217443 217443 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1490 SAMTools SNP 219219 219219 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C21%2C0:39 scaffold1490 SAMTools SNP 219237 219237 96.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold1490 SAMTools SNP 219373 219373 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1490 SAMTools SNP 222353 222353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1490 SAMTools SNP 225685 225685 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C179:99 scaffold1490 SAMTools SNP 229104 229104 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1490 SAMTools SNP 229157 229157 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.036%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C211:61 scaffold1490 SAMTools SNP 229168 229168 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0033%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1490 SAMTools SNP 229203 229203 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 232551 232551 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1490 SAMTools SNP 235338 235338 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 238317 238317 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1490 SAMTools SNP 238538 238538 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C10%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.11%2C0.37%2C0.023%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 242888 242888 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D46%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C96:99 scaffold1490 SAMTools SNP 243877 243877 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 243891 243891 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 243915 243915 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1490 SAMTools SNP 244110 244110 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1490 SAMTools SNP 244827 244827 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1490 SAMTools SNP 244860 244860 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1490 SAMTools SNP 250473 250473 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold1490 SAMTools SNP 258327 258327 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C22%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1490 SAMTools SNP 258358 258358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C85%2C206%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 258881 258881 28.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold1490 SAMTools SNP 259936 259936 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C36%2C0:69 scaffold1490 SAMTools SNP 260537 260537 44.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D709%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1490 SAMTools SNP 260555 260555 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D713%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C307%2C60%2C206%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.044%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1490 SAMTools SNP 260834 260834 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C152%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 260861 260861 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 260954 260954 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 261978 261978 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C48%2C41%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 262880 262880 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1869%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D895%2C128%2C721%2C107%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.83%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1490 SAMTools SNP 263219 263219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C165%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 266345 266345 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1490 SAMTools SNP 273255 273255 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D220%2C116%2C77%2C17%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.0023%2C1%2C1%2C8.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1490 SAMTools SNP 275116 275116 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C92%2C126%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 277646 277646 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C477%2C75%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 277700 277700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D587%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C92%2C108%2C229%3BMQ%3D43%3BFQ%3D225%3BPV4%3D4.7e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 292247 292247 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C220:88 scaffold1490 SAMTools SNP 292248 292248 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D49%3BFQ%3D102%3BPV4%3D1%2C0.46%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C232:99 scaffold1490 SAMTools SNP 292751 292751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C19%2C2%3BMQ%3D48%3BFQ%3D217%3BPV4%3D0.23%2C0.44%2C0.016%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1490 SAMTools SNP 292782 292782 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C18%3BMQ%3D47%3BFQ%3D203%3BPV4%3D0.11%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C231:99 scaffold1490 SAMTools SNP 292987 292987 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1490 SAMTools SNP 303606 303606 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C35%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1490 SAMTools SNP 303951 303951 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1490 SAMTools SNP 304966 304966 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1490 SAMTools SNP 306153 306153 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1490 SAMTools SNP 306192 306192 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1490 SAMTools SNP 306687 306687 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1490 SAMTools SNP 306913 306913 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1490 SAMTools SNP 307184 307184 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold1490 SAMTools SNP 307193 307193 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1490 SAMTools SNP 307640 307640 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1490 SAMTools SNP 307758 307758 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1490 SAMTools SNP 308224 308224 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.63%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1490 SAMTools SNP 309783 309783 11.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1490 SAMTools SNP 313679 313679 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1490 SAMTools SNP 313708 313708 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1490 SAMTools SNP 314359 314359 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1490 SAMTools SNP 315587 315587 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1490 SAMTools SNP 315658 315658 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1490 SAMTools SNP 316898 316898 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 325649 325649 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C45%2C0:87 scaffold1490 SAMTools SNP 326715 326715 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C2%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 326901 326901 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold1490 SAMTools SNP 330015 330015 55.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold1490 SAMTools SNP 331463 331463 6.17 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1490 SAMTools SNP 341541 341541 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D41%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C87%2C0:99 scaffold1490 SAMTools SNP 354738 354738 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1490 SAMTools SNP 355063 355063 7.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C0%3BMQ%3D9%3BFQ%3D-123%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C96%2C0:54 scaffold1490 SAMTools SNP 359690 359690 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold1490 SAMTools SNP 360480 360480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 360558 360558 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0200%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.32%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C23:26 scaffold1490 SAMTools SNP 360684 360684 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1490 SAMTools SNP 360827 360827 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0021%2C7.5e-07%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1490 SAMTools SNP 360927 360927 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C39%2C0:75 scaffold1490 SAMTools SNP 362023 362023 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C66%2C0:99 scaffold1490 SAMTools SNP 369732 369732 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C19%2C3%3BMQ%3D41%3BFQ%3D156%3BPV4%3D0.66%2C0.099%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C246:99 scaffold1490 SAMTools SNP 369873 369873 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1490 SAMTools SNP 370284 370284 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1490 SAMTools SNP 370518 370518 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1490 SAMTools SNP 379464 379464 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1490 SAMTools SNP 381081 381081 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1490 SAMTools SNP 384926 384926 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1490 SAMTools SNP 386398 386398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1490 SAMTools SNP 387320 387320 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1490 SAMTools SNP 387571 387571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1490 SAMTools SNP 387587 387587 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C250:99 scaffold1490 SAMTools SNP 388412 388412 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1490 SAMTools SNP 388697 388697 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1490 SAMTools SNP 389940 389940 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1490 SAMTools SNP 390276 390276 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1490 SAMTools SNP 393531 393531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C10%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1490 SAMTools SNP 393640 393640 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 396438 396438 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.14%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1490 SAMTools SNP 396459 396459 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C171:99 scaffold1490 SAMTools SNP 396584 396584 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1490 SAMTools SNP 399067 399067 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1490 SAMTools SNP 399448 399448 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1490 SAMTools SNP 399607 399607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C3%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1490 SAMTools SNP 399798 399798 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C37%2C4%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.019%2C0.16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1490 SAMTools SNP 401404 401404 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C48%2C0:79 scaffold1490 SAMTools SNP 401473 401473 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C154%2C0:99 scaffold1490 SAMTools SNP 401826 401826 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C1%2C105%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.65%2C3e-162%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1490 SAMTools SNP 401844 401844 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-125%3BPV4%3D1%2C2.1e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C98%2C0:99 scaffold1490 SAMTools SNP 401879 401879 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C66%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 401915 401915 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 402249 402249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 402432 402432 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C83%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 402592 402592 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C37%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 402836 402836 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 402845 402845 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1490 SAMTools SNP 402872 402872 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C26%2C3%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.031%2C0.0072%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1490 SAMTools SNP 403004 403004 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1490 SAMTools SNP 403241 403241 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1490 SAMTools SNP 403271 403271 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 403513 403513 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.41%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1490 SAMTools SNP 403525 403525 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1490 SAMTools SNP 403728 403728 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C46%2C14%3BMQ%3D50%3BFQ%3D-119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C92%2C0:99 scaffold1490 SAMTools SNP 404192 404192 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 406095 406095 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1490 SAMTools SNP 406133 406133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C133%2C92%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1490 SAMTools SNP 410304 410304 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1490 SAMTools SNP 410326 410326 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1491 SAMTools SNP 830 830 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1491 SAMTools SNP 880 880 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1491 SAMTools SNP 1492 1492 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.0047%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1491 SAMTools SNP 2004 2004 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1491 SAMTools SNP 2011 2011 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1491 SAMTools SNP 2266 2266 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C88%2C39%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-07%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 2292 2292 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C104%2C38%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 3369 3369 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1491 SAMTools SNP 3370 3370 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1491 SAMTools SNP 10122 10122 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C79%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00079%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 10138 10138 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C82%2C86%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 11476 11476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D742%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C196%2C249%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.51%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1491 SAMTools SNP 12212 12212 105 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C40%2C16%2C123%2C0%2C120:45 scaffold1491 SAMTools SNP 17636 17636 35.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1491 SAMTools SNP 24342 24342 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C18%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C214%2C0:99 scaffold1491 SAMTools SNP 25161 25161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C49%2C109%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C8.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 25206 25206 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C126%2C88%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 25240 25240 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D574%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C262%2C214%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1491 SAMTools SNP 25880 25880 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C227%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1491 SAMTools SNP 26386 26386 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C2%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 26832 26832 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold1491 SAMTools SNP 27365 27365 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold1491 SAMTools SNP 27661 27661 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C27%2C0:51 scaffold1491 SAMTools SNP 28941 28941 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1491 SAMTools SNP 31101 31101 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1491 SAMTools SNP 31102 31102 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1491 SAMTools SNP 31125 31125 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1491 SAMTools SNP 31330 31330 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C198:99 scaffold1491 SAMTools SNP 31426 31426 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C10%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.54%2C0.18%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1491 SAMTools SNP 33898 33898 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00092%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 33940 33940 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C28%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.24%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1491 SAMTools SNP 34137 34137 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 34161 34161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 34581 34581 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1491 SAMTools SNP 34966 34966 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C52%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1491 SAMTools SNP 37136 37136 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C57%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0046%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1491 SAMTools SNP 37154 37154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C38%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1491 SAMTools SNP 37681 37681 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold1491 SAMTools SNP 37717 37717 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1491 SAMTools SNP 38069 38069 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1491 SAMTools SNP 38084 38084 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C246:99 scaffold1491 SAMTools SNP 38270 38270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1491 SAMTools SNP 38315 38315 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1491 SAMTools SNP 38708 38708 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1491 SAMTools SNP 38717 38717 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1491 SAMTools SNP 38893 38893 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold1491 SAMTools SNP 38956 38956 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1491 SAMTools SNP 39851 39851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 39895 39895 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.25%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1491 SAMTools SNP 40213 40213 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1491 SAMTools SNP 40218 40218 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1491 SAMTools SNP 41492 41492 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1491 SAMTools SNP 41563 41563 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.4%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C73:76 scaffold1491 SAMTools SNP 42103 42103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1491 SAMTools SNP 42196 42196 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C69:72 scaffold1491 SAMTools SNP 54770 54770 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0022%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1491 SAMTools SNP 55192 55192 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C18%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0084%2C0.47%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1491 SAMTools SNP 55560 55560 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C25%2C37%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 57932 57932 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1491 SAMTools SNP 57933 57933 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1491 SAMTools SNP 57955 57955 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C52%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1491 SAMTools SNP 58150 58150 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1491 SAMTools SNP 60201 60201 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1491 SAMTools SNP 60466 60466 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.13%2C5.1e-13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1491 SAMTools SNP 61509 61509 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C243:99 scaffold1491 SAMTools SNP 61538 61538 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1491 SAMTools SNP 101395 101395 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.48%2C1.9e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C252:99 scaffold1491 SAMTools SNP 101451 101451 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C34%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.36%2C4.6e-47%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1491 SAMTools SNP 119986 119986 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1491 SAMTools SNP 120018 120018 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1491 SAMTools SNP 120046 120046 18 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1492 SAMTools SNP 2607 2607 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1492 SAMTools SNP 2628 2628 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 2748 2748 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 3065 3065 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1492 SAMTools SNP 3420 3420 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1492 SAMTools SNP 6414 6414 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 6431 6431 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 6483 6483 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1492 SAMTools SNP 8733 8733 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold1492 SAMTools SNP 10406 10406 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1492 SAMTools SNP 10436 10436 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1492 SAMTools SNP 10460 10460 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1492 SAMTools SNP 10472 10472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 11925 11925 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 12228 12228 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 12831 12831 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 13421 13421 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1492 SAMTools SNP 13995 13995 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1492 SAMTools SNP 13996 13996 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.43%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1492 SAMTools SNP 14512 14512 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold1492 SAMTools SNP 14551 14551 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 14563 14563 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 14584 14584 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1492 SAMTools SNP 16227 16227 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1492 SAMTools SNP 16242 16242 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1492 SAMTools SNP 16346 16346 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1492 SAMTools SNP 17624 17624 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1492 SAMTools SNP 18708 18708 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 18726 18726 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 18727 18727 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 19256 19256 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1492 SAMTools SNP 21382 21382 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.19%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1492 SAMTools SNP 21430 21430 95.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C21%2C0:39 scaffold1492 SAMTools SNP 21703 21703 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1492 SAMTools SNP 21718 21718 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1492 SAMTools SNP 22657 22657 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1492 SAMTools SNP 31655 31655 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C66%2C0:99 scaffold1492 SAMTools SNP 31673 31673 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C75%2C0:99 scaffold1492 SAMTools SNP 32135 32135 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C39%2C0:75 scaffold1492 SAMTools SNP 32267 32267 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0:57 scaffold1492 SAMTools SNP 32309 32309 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold1492 SAMTools SNP 32321 32321 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1492 SAMTools SNP 32333 32333 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C30%2C0:57 scaffold1492 SAMTools SNP 32454 32454 39 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0%2C60%2C8%2C57:56 scaffold1492 SAMTools SNP 33028 33028 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1492 SAMTools SNP 35915 35915 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C38%2C101%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D2e-09%2C1.9e-60%2C1%2C1.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1492 SAMTools SNP 38080 38080 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 38178 38178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 38235 38235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 38729 38729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C12%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.018%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 39347 39347 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold1492 SAMTools SNP 39363 39363 216 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D45%3BFQ%3D-109;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C6%2C252%2C0%2C246:99 scaffold1492 SAMTools SNP 39378 39378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C19%2C13%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 40900 40900 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C11%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.14%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 41956 41956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C82%2C1%2C177%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.04%2C0.42%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 42453 42453 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 42467 42467 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1492 SAMTools SNP 42497 42497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C127%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 42920 42920 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C14%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C61%2C0:99 scaffold1492 SAMTools SNP 44027 44027 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C161%2C1%2C50%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1492 SAMTools SNP 48253 48253 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C72%2C0:99 scaffold1492 SAMTools SNP 90192 90192 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1492 SAMTools SNP 90224 90224 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1492 SAMTools SNP 90820 90820 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C33%2C0:63 scaffold1492 SAMTools SNP 90880 90880 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 91356 91356 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C5%2C27%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.15%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1492 SAMTools SNP 91365 91365 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C23%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.086%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1492 SAMTools SNP 91416 91416 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1492 SAMTools SNP 91475 91475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C26%2C17%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 91782 91782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C52%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1492 SAMTools SNP 91803 91803 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C13%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0011%2C0.15%2C0.046%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 92690 92690 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C1%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00014%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 92717 92717 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C11%2C6%3BMQ%3D48%3BFQ%3D159%3BPV4%3D0.34%2C0.17%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold1492 SAMTools SNP 92810 92810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1492 SAMTools SNP 93467 93467 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1492 SAMTools SNP 93491 93491 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1492 SAMTools SNP 93501 93501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.021%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1492 SAMTools SNP 93808 93808 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.39%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1492 SAMTools SNP 93851 93851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1492 SAMTools SNP 94205 94205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 94212 94212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 94235 94235 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1492 SAMTools SNP 94310 94310 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.2%2C1.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C219:99 scaffold1492 SAMTools SNP 94355 94355 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1492 SAMTools SNP 94771 94771 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 94837 94837 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0017%2C0.069%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1492 SAMTools SNP 95462 95462 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C42%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1492 SAMTools SNP 95564 95564 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C54%2C0:99 scaffold1492 SAMTools SNP 95582 95582 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1492 SAMTools SNP 95594 95594 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1492 SAMTools SNP 96228 96228 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C245:67 scaffold1492 SAMTools SNP 96252 96252 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C204:79 scaffold1492 SAMTools SNP 96315 96315 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C51%2C0:99 scaffold1492 SAMTools SNP 96396 96396 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold1492 SAMTools SNP 96450 96450 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1492 SAMTools SNP 96507 96507 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1492 SAMTools SNP 97282 97282 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1492 SAMTools SNP 97387 97387 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1492 SAMTools SNP 97795 97795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C18%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1492 SAMTools SNP 97837 97837 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C31%2C13%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C0.41%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold1492 SAMTools SNP 98713 98713 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C24%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1492 SAMTools SNP 99123 99123 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1492 SAMTools SNP 99132 99132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C14%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1492 SAMTools SNP 99749 99749 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C114%2C0:99 scaffold1492 SAMTools SNP 100200 100200 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1492 SAMTools SNP 100799 100799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C26%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1492 SAMTools SNP 100808 100808 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1492 SAMTools SNP 107642 107642 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1492 SAMTools SNP 120890 120890 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1492 SAMTools SNP 126501 126501 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 126847 126847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 127015 127015 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 127033 127033 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1492 SAMTools SNP 127054 127054 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1492 SAMTools SNP 127314 127314 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1492 SAMTools SNP 127350 127350 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold1492 SAMTools SNP 127878 127878 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C3.2e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C184:99 scaffold1492 SAMTools SNP 128358 128358 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C27%2C0:51 scaffold1492 SAMTools SNP 128872 128872 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1492 SAMTools SNP 128907 128907 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1492 SAMTools SNP 129058 129058 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C51%2C0:99 scaffold1492 SAMTools SNP 129146 129146 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.019%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C147:67 scaffold1492 SAMTools SNP 129413 129413 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 129452 129452 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1492 SAMTools SNP 129737 129737 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1492 SAMTools SNP 129981 129981 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1492 SAMTools SNP 132092 132092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1492 SAMTools SNP 132124 132124 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1492 SAMTools SNP 132294 132294 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1492 SAMTools SNP 132323 132323 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1492 SAMTools SNP 152029 152029 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold1492 SAMTools SNP 152649 152649 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1492 SAMTools SNP 153682 153682 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C39%2C0:75 scaffold1492 SAMTools SNP 154120 154120 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1492 SAMTools SNP 154699 154699 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C62:65 scaffold1492 SAMTools SNP 154720 154720 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold1492 SAMTools SNP 154835 154835 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1492 SAMTools SNP 154868 154868 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 154874 154874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 155440 155440 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C28%2C0:53 scaffold1492 SAMTools SNP 155497 155497 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1492 SAMTools SNP 155500 155500 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1492 SAMTools SNP 155883 155883 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold1492 SAMTools SNP 155972 155972 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1492 SAMTools SNP 156077 156077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 160134 160134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 163664 163664 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1492 SAMTools SNP 163754 163754 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C226:99 scaffold1492 SAMTools SNP 163778 163778 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold1492 SAMTools SNP 164496 164496 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.52%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C116:85 scaffold1492 SAMTools SNP 164745 164745 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C175:99 scaffold1492 SAMTools SNP 164915 164915 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1492 SAMTools SNP 165038 165038 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 166173 166173 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1492 SAMTools SNP 166191 166191 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold1492 SAMTools SNP 166230 166230 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1492 SAMTools SNP 166616 166616 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1492 SAMTools SNP 166623 166623 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1492 SAMTools SNP 166661 166661 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1492 SAMTools SNP 166919 166919 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C9%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.66%2C2.7e-38%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1492 SAMTools SNP 167012 167012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1492 SAMTools SNP 168212 168212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.005%2C0.15%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold1492 SAMTools SNP 168230 168230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1492 SAMTools SNP 168448 168448 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.16%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1492 SAMTools SNP 168637 168637 3.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1492 SAMTools SNP 169345 169345 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1492 SAMTools SNP 176031 176031 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1492 SAMTools SNP 179006 179006 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1492 SAMTools SNP 181135 181135 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1492 SAMTools SNP 183125 183125 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 183147 183147 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 190154 190154 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1492 SAMTools SNP 191905 191905 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.1e-15%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1492 SAMTools SNP 193551 193551 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1492 SAMTools SNP 194230 194230 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1492 SAMTools SNP 236884 236884 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.24%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1492 SAMTools SNP 237073 237073 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1492 SAMTools SNP 239707 239707 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1492 SAMTools SNP 241644 241644 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1492 SAMTools SNP 242100 242100 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C210:72 scaffold1492 SAMTools SNP 242155 242155 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1492 SAMTools SNP 242526 242526 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 242557 242557 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 246055 246055 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1492 SAMTools SNP 247910 247910 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1492 SAMTools SNP 253365 253365 45.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1492 SAMTools SNP 253379 253379 71 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0%2C95%2C5%2C92:45 scaffold1492 SAMTools SNP 253624 253624 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7904%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C6785%2C1046%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 254532 254532 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D711%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C237%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1492 SAMTools SNP 254704 254704 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1492 SAMTools SNP 254710 254710 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1492 SAMTools SNP 257100 257100 22.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1492 SAMTools SNP 257175 257175 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1492 SAMTools SNP 257748 257748 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C206:31 scaffold1492 SAMTools SNP 261383 261383 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold1492 SAMTools SNP 262237 262237 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1492 SAMTools SNP 262585 262585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold1492 SAMTools SNP 262675 262675 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1492 SAMTools SNP 262838 262838 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C24%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.011%2C0.37%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1492 SAMTools SNP 263061 263061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1492 SAMTools SNP 263076 263076 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.41%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1492 SAMTools SNP 263085 263085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.022%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 263091 263091 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 263100 263100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 263346 263346 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C36%2C3%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1492 SAMTools SNP 263388 263388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-05%2C1.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 263403 263403 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C31%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D2.5e-06%2C1.4e-47%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1492 SAMTools SNP 263451 263451 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 263478 263478 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 264119 264119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1492 SAMTools SNP 265030 265030 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1492 SAMTools SNP 265081 265081 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 265089 265089 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1492 SAMTools SNP 265552 265552 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1492 SAMTools SNP 265572 265572 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1492 SAMTools SNP 265586 265586 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1492 SAMTools SNP 266133 266133 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1492 SAMTools SNP 266631 266631 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.4%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 266794 266794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C18%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.38%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1492 SAMTools SNP 266837 266837 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1492 SAMTools SNP 267156 267156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C2%2C17%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.17%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1492 SAMTools SNP 267174 267174 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.42%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1492 SAMTools SNP 267213 267213 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C221:99 scaffold1492 SAMTools SNP 267866 267866 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1492 SAMTools SNP 267871 267871 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1492 SAMTools SNP 267974 267974 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1492 SAMTools SNP 268286 268286 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 268332 268332 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 268349 268349 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 268400 268400 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1492 SAMTools SNP 269410 269410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1492 SAMTools SNP 269774 269774 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold1492 SAMTools SNP 270399 270399 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1492 SAMTools SNP 270419 270419 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1492 SAMTools SNP 270443 270443 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1492 SAMTools SNP 271128 271128 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1492 SAMTools SNP 271210 271210 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1492 SAMTools SNP 271230 271230 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1492 SAMTools SNP 271633 271633 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1492 SAMTools SNP 271863 271863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1492 SAMTools SNP 271908 271908 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1492 SAMTools SNP 271935 271935 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1492 SAMTools SNP 273540 273540 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1492 SAMTools SNP 273564 273564 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C12%2C35%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0032%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1492 SAMTools SNP 274549 274549 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1492 SAMTools SNP 274569 274569 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C14%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.077%2C8.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C204:85 scaffold1492 SAMTools SNP 296979 296979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1493 SAMTools SNP 8741 8741 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1493 SAMTools SNP 14544 14544 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D39%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold1493 SAMTools SNP 16955 16955 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 17009 17009 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1493 SAMTools SNP 17176 17176 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1493 SAMTools SNP 17197 17197 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold1493 SAMTools SNP 17218 17218 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1493 SAMTools SNP 17263 17263 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C10%2C0%3BMQ%3D47%3BFQ%3D160%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1493 SAMTools SNP 18305 18305 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D46%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1493 SAMTools SNP 18326 18326 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0%2C48%2C1%2C45:6 scaffold1493 SAMTools SNP 18830 18830 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.33%2C0.00027%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C82:84 scaffold1493 SAMTools SNP 19160 19160 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D23%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C45%2C0:59 scaffold1493 SAMTools SNP 24852 24852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 35062 35062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1493 SAMTools SNP 36327 36327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1493 SAMTools SNP 36975 36975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1493 SAMTools SNP 37011 37011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1493 SAMTools SNP 37041 37041 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1493 SAMTools SNP 37047 37047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1493 SAMTools SNP 37862 37862 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.42%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1493 SAMTools SNP 38050 38050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1493 SAMTools SNP 39365 39365 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1493 SAMTools SNP 39389 39389 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C254:99 scaffold1493 SAMTools SNP 43014 43014 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1493 SAMTools SNP 43024 43024 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1493 SAMTools SNP 45366 45366 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 46101 46101 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.61%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C252:99 scaffold1493 SAMTools SNP 46454 46454 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1493 SAMTools SNP 48359 48359 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 49196 49196 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1493 SAMTools SNP 49259 49259 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 50045 50045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C0.15%2C1%2C1.1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 50072 50072 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.12%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1493 SAMTools SNP 50285 50285 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 50288 50288 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C13%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 50564 50564 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 50588 50588 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 50642 50642 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.018%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 54028 54028 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1493 SAMTools SNP 56532 56532 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.68%2C1.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1493 SAMTools SNP 56856 56856 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D0.11%2C1.6e-09%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C69:68 scaffold1493 SAMTools SNP 57416 57416 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C14%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.027%2C6e-25%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1493 SAMTools SNP 57516 57516 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C24%2C0:45 scaffold1493 SAMTools SNP 58662 58662 207 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C241:99 scaffold1493 SAMTools SNP 60225 60225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C248:99 scaffold1493 SAMTools SNP 60231 60231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1493 SAMTools SNP 60310 60310 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 60324 60324 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C6%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 60876 60876 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1493 SAMTools SNP 61414 61414 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.026%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1493 SAMTools SNP 61901 61901 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1493 SAMTools SNP 62986 62986 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.19%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1493 SAMTools SNP 68106 68106 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.17%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C112:52 scaffold1493 SAMTools SNP 78642 78642 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 87356 87356 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1493 SAMTools SNP 87470 87470 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C56:43 scaffold1493 SAMTools SNP 87939 87939 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1493 SAMTools SNP 95463 95463 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1493 SAMTools SNP 109456 109456 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C492%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1493 SAMTools SNP 109824 109824 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1493 SAMTools SNP 111095 111095 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1493 SAMTools SNP 117441 117441 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1493 SAMTools SNP 124684 124684 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1493 SAMTools SNP 124688 124688 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1493 SAMTools SNP 140566 140566 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1493 SAMTools SNP 140894 140894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1493 SAMTools SNP 140914 140914 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1493 SAMTools SNP 141317 141317 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1493 SAMTools SNP 141716 141716 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1493 SAMTools SNP 141762 141762 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1497 SAMTools SNP 15179 15179 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 15196 15196 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 15211 15211 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1497 SAMTools SNP 15266 15266 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 36274 36274 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1497 SAMTools SNP 36400 36400 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1497 SAMTools SNP 50745 50745 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1497 SAMTools SNP 83848 83848 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C233:99 scaffold1497 SAMTools SNP 84911 84911 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1497 SAMTools SNP 85286 85286 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1497 SAMTools SNP 85325 85325 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1497 SAMTools SNP 86402 86402 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C214:99 scaffold1497 SAMTools SNP 86746 86746 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C9%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1497 SAMTools SNP 87411 87411 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C175%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1497 SAMTools SNP 88963 88963 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1497 SAMTools SNP 95218 95218 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold1497 SAMTools SNP 97001 97001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1497 SAMTools SNP 97007 97007 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 97028 97028 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1497 SAMTools SNP 97043 97043 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 97079 97079 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1497 SAMTools SNP 97843 97843 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1497 SAMTools SNP 97945 97945 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold1497 SAMTools SNP 98170 98170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C19%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1497 SAMTools SNP 98376 98376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1497 SAMTools SNP 98505 98505 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.52%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1497 SAMTools SNP 98523 98523 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D40%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.58%2C0.02%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1497 SAMTools SNP 98900 98900 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C67%2C25%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.24%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 99057 99057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C21%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1497 SAMTools SNP 99150 99150 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.00029%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 99431 99431 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 99449 99449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C17%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.019%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1497 SAMTools SNP 99479 99479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 99488 99488 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 99975 99975 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C30%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.17%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1497 SAMTools SNP 100175 100175 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 100551 100551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 102639 102639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 102730 102730 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1497 SAMTools SNP 105935 105935 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 106387 106387 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1497 SAMTools SNP 108101 108101 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C88:37 scaffold1497 SAMTools SNP 109565 109565 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1497 SAMTools SNP 109577 109577 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1497 SAMTools SNP 110728 110728 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1497 SAMTools SNP 136434 136434 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1497 SAMTools SNP 138657 138657 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C233:99 scaffold1497 SAMTools SNP 138669 138669 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C4.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C226:99 scaffold1497 SAMTools SNP 139717 139717 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1497 SAMTools SNP 140269 140269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1497 SAMTools SNP 140339 140339 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1497 SAMTools SNP 140783 140783 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1497 SAMTools SNP 148206 148206 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C72%2C0:99 scaffold1497 SAMTools SNP 148800 148800 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C6%2C10%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C2.4e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1497 SAMTools SNP 148852 148852 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1497 SAMTools SNP 148877 148877 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1497 SAMTools SNP 148992 148992 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C34%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C157%2C0:99 scaffold1497 SAMTools SNP 149085 149085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1497 SAMTools SNP 149502 149502 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1497 SAMTools SNP 149826 149826 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.23%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C91:74 scaffold1497 SAMTools SNP 150651 150651 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C11%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.29%2C1.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1497 SAMTools SNP 150996 150996 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.061%2C4.3e-18%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1497 SAMTools SNP 153191 153191 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C20:23 scaffold1497 SAMTools SNP 153516 153516 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C42%2C0:81 scaffold1497 SAMTools SNP 153966 153966 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1497 SAMTools SNP 154053 154053 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1497 SAMTools SNP 154211 154211 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C215:99 scaffold1497 SAMTools SNP 155880 155880 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1497 SAMTools SNP 156743 156743 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1497 SAMTools SNP 164204 164204 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1498 SAMTools SNP 575 575 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D47%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1498 SAMTools SNP 4072 4072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1498 SAMTools SNP 4671 4671 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D2e-05%2C8.8e-15%2C1%2C1.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1498 SAMTools SNP 4700 4700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D35%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1498 SAMTools SNP 4739 4739 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C11%2C22%3BMQ%3D41%3BFQ%3D191%3BPV4%3D0.0092%2C1%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1498 SAMTools SNP 5130 5130 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C9%2C5%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.11%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1498 SAMTools SNP 5134 5134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C9%2C5%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.35%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1498 SAMTools SNP 5136 5136 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C8%2C0%3BMQ%3D45%3BFQ%3D27%3BPV4%3D0.0073%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1498 SAMTools SNP 5263 5263 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1498 SAMTools SNP 6040 6040 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1498 SAMTools SNP 6060 6060 26.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold1498 SAMTools SNP 6112 6112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1498 SAMTools SNP 6155 6155 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1498 SAMTools SNP 6252 6252 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1498 SAMTools SNP 7217 7217 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1498 SAMTools SNP 7219 7219 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C2%2C56%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.51%2C0.36%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1498 SAMTools SNP 7268 7268 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1498 SAMTools SNP 26919 26919 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1498 SAMTools SNP 46111 46111 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1498 SAMTools SNP 46138 46138 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0020%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C3.7e-05%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C112:37 scaffold1498 SAMTools SNP 67688 67688 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1498 SAMTools SNP 67791 67791 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1498 SAMTools SNP 67821 67821 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C12:15 scaffold1498 SAMTools SNP 68179 68179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1498 SAMTools SNP 69537 69537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1498 SAMTools SNP 69606 69606 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1498 SAMTools SNP 71390 71390 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1498 SAMTools SNP 72114 72114 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1498 SAMTools SNP 72184 72184 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1498 SAMTools SNP 73126 73126 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1498 SAMTools SNP 73992 73992 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1498 SAMTools SNP 75213 75213 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1498 SAMTools SNP 80320 80320 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1498 SAMTools SNP 80373 80373 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C21:24 scaffold1498 SAMTools SNP 80403 80403 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C121:80 scaffold1498 SAMTools SNP 81004 81004 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1498 SAMTools SNP 81146 81146 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1498 SAMTools SNP 81201 81201 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1498 SAMTools SNP 81830 81830 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1498 SAMTools SNP 83731 83731 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold1498 SAMTools SNP 88495 88495 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1498 SAMTools SNP 91670 91670 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1498 SAMTools SNP 93278 93278 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1498 SAMTools SNP 93283 93283 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 11041 11041 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold150 SAMTools SNP 11594 11594 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 112079 112079 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C229:58 scaffold150 SAMTools SNP 122438 122438 20.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.12%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C2:5 scaffold150 SAMTools SNP 122819 122819 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.8e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C156:78 scaffold150 SAMTools SNP 123431 123431 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold150 SAMTools SNP 144390 144390 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold150 SAMTools SNP 151660 151660 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold150 SAMTools SNP 152194 152194 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold150 SAMTools SNP 204013 204013 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.29%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold150 SAMTools SNP 207744 207744 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold150 SAMTools SNP 210790 210790 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold150 SAMTools SNP 211100 211100 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold150 SAMTools SNP 222252 222252 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C0%2C99%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 224018 224018 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D245%2C0%2C269%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 224346 224346 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C33%2C0%2C19%3BMQ%3D40%3BFQ%3D123%3BPV4%3D0.0034%2C1%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C206:99 scaffold150 SAMTools SNP 224392 224392 39.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C3%2C4%2C8%3BMQ%3D15%3BFQ%3D-33%3BPV4%3D0.1%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold150 SAMTools SNP 225406 225406 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C30%2C0:57 scaffold150 SAMTools SNP 225514 225514 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold150 SAMTools SNP 232455 232455 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C28%3BMQ%3D49%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold150 SAMTools SNP 234683 234683 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0062%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold150 SAMTools SNP 234735 234735 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.53%2C0.035%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold150 SAMTools SNP 235431 235431 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold150 SAMTools SNP 235523 235523 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 236380 236380 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C28%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D2.8e-05%2C0.084%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold150 SAMTools SNP 236428 236428 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold150 SAMTools SNP 238235 238235 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 238854 238854 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D0.15%2C2.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C57:60 scaffold150 SAMTools SNP 239051 239051 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold150 SAMTools SNP 241242 241242 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold150 SAMTools SNP 241252 241252 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 241256 241256 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 242485 242485 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold150 SAMTools SNP 243357 243357 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 243467 243467 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C8.7e-07%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold150 SAMTools SNP 243651 243651 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold150 SAMTools SNP 307819 307819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 316531 316531 32.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold150 SAMTools SNP 321013 321013 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold150 SAMTools SNP 323912 323912 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold150 SAMTools SNP 324000 324000 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold150 SAMTools SNP 324130 324130 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold150 SAMTools SNP 325750 325750 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 325924 325924 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold150 SAMTools SNP 326983 326983 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C45%2C0:87 scaffold150 SAMTools SNP 327659 327659 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold150 SAMTools SNP 329675 329675 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold150 SAMTools SNP 331073 331073 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold150 SAMTools SNP 331210 331210 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold150 SAMTools SNP 331489 331489 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 332280 332280 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 332281 332281 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 332320 332320 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00068%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold150 SAMTools SNP 333567 333567 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C235:99 scaffold150 SAMTools SNP 337461 337461 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C25%2C41%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 337617 337617 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C51%3BMQ%3D18%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C255%2C0:84 scaffold150 SAMTools SNP 339119 339119 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D15%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C69%2C0:99 scaffold150 SAMTools SNP 340401 340401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C17%2C13%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 340443 340443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C10%3BMQ%3D46%3BFQ%3D199%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold150 SAMTools SNP 361492 361492 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold150 SAMTools SNP 402109 402109 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold150 SAMTools SNP 402243 402243 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0095%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold150 SAMTools SNP 402295 402295 50.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold150 SAMTools SNP 403162 403162 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 403205 403205 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 476234 476234 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold150 SAMTools SNP 476919 476919 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold150 SAMTools SNP 512756 512756 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold150 SAMTools SNP 513035 513035 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold150 SAMTools SNP 514004 514004 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold150 SAMTools SNP 514063 514063 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold150 SAMTools SNP 514089 514089 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold150 SAMTools SNP 517892 517892 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold150 SAMTools SNP 517946 517946 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold150 SAMTools SNP 518674 518674 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 518704 518704 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 518710 518710 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 519196 519196 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 519709 519709 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 519724 519724 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C222:99 scaffold150 SAMTools SNP 519726 519726 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C229:33 scaffold150 SAMTools SNP 520486 520486 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold150 SAMTools SNP 526110 526110 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold150 SAMTools SNP 526132 526132 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold150 SAMTools SNP 526141 526141 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 526773 526773 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 526846 526846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 527401 527401 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold150 SAMTools SNP 528309 528309 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.54%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C23:27 scaffold150 SAMTools SNP 532017 532017 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold150 SAMTools SNP 533071 533071 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold150 SAMTools SNP 547864 547864 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 548635 548635 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold150 SAMTools SNP 548671 548671 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold150 SAMTools SNP 548896 548896 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 552458 552458 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold150 SAMTools SNP 552598 552598 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold150 SAMTools SNP 627474 627474 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C17%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold150 SAMTools SNP 628199 628199 89.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C21%2C0:39 scaffold150 SAMTools SNP 630711 630711 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold150 SAMTools SNP 661209 661209 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold150 SAMTools SNP 661374 661374 83.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-47%3BPV4%3D1%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C20%2C0:37 scaffold150 SAMTools SNP 661859 661859 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 662197 662197 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold150 SAMTools SNP 663283 663283 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C96:52 scaffold150 SAMTools SNP 663732 663732 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 663784 663784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C0.26%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold150 SAMTools SNP 663790 663790 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold150 SAMTools SNP 666267 666267 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.27%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold150 SAMTools SNP 666277 666277 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold150 SAMTools SNP 680131 680131 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold150 SAMTools SNP 680185 680185 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.13%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold150 SAMTools SNP 683739 683739 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 683813 683813 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C23%2C0%2C28%3BMQ%3D50%3BFQ%3D107%3BPV4%3D2.5e-10%2C8.6e-09%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold150 SAMTools SNP 684367 684367 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C126%2C0:99 scaffold150 SAMTools SNP 685410 685410 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold150 SAMTools SNP 685490 685490 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.15%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C71:37 scaffold150 SAMTools SNP 686666 686666 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C2%2C40%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0016%2C2.3e-66%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold150 SAMTools SNP 687538 687538 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C17%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C7.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C121:75 scaffold150 SAMTools SNP 687775 687775 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold150 SAMTools SNP 691882 691882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold150 SAMTools SNP 695501 695501 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C51%2C0:99 scaffold150 SAMTools SNP 697909 697909 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 725893 725893 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 727376 727376 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 727427 727427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold150 SAMTools SNP 727430 727430 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold150 SAMTools SNP 733870 733870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold150 SAMTools SNP 736817 736817 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold150 SAMTools SNP 736850 736850 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.13%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold150 SAMTools SNP 744834 744834 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold150 SAMTools SNP 745149 745149 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.014%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C228:73 scaffold150 SAMTools SNP 745197 745197 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.0066%2C0.16%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold150 SAMTools SNP 745412 745412 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold150 SAMTools SNP 745608 745608 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold150 SAMTools SNP 747214 747214 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C30%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold150 SAMTools SNP 747269 747269 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.44%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C228:95 scaffold150 SAMTools SNP 748490 748490 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C236:99 scaffold150 SAMTools SNP 748518 748518 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.46%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold150 SAMTools SNP 749827 749827 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C208:34 scaffold150 SAMTools SNP 755351 755351 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C18%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 755666 755666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 767607 767607 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C190:99 scaffold150 SAMTools SNP 767615 767615 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold150 SAMTools SNP 767633 767633 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 767731 767731 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C244:66 scaffold150 SAMTools SNP 767985 767985 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D44%3BFQ%3D24%3BPV4%3D0.11%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold150 SAMTools SNP 767991 767991 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D45%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold150 SAMTools SNP 768084 768084 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D42%3BFQ%3D36%3BPV4%3D1%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C63:66 scaffold150 SAMTools SNP 771447 771447 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold150 SAMTools SNP 771996 771996 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D32%3BFQ%3D8.65%3BPV4%3D0.57%2C0.32%2C0.24%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C107:36 scaffold150 SAMTools SNP 791257 791257 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D46%3BFQ%3D16.1%3BPV4%3D0.47%2C0.097%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C126:46 scaffold150 SAMTools SNP 791715 791715 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 795540 795540 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold150 SAMTools SNP 795665 795665 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold150 SAMTools SNP 802917 802917 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold150 SAMTools SNP 839120 839120 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 839127 839127 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold150 SAMTools SNP 841801 841801 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0241%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.066%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold150 SAMTools SNP 842154 842154 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold150 SAMTools SNP 842963 842963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 842978 842978 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C153:99 scaffold150 SAMTools SNP 842990 842990 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold150 SAMTools SNP 844867 844867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 844951 844951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 845002 845002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold150 SAMTools SNP 845489 845489 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C29%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.00046%2C0.0028%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold150 SAMTools SNP 846347 846347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 848345 848345 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 850528 850528 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold150 SAMTools SNP 850568 850568 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 851121 851121 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold150 SAMTools SNP 853771 853771 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold150 SAMTools SNP 854512 854512 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C154:53 scaffold150 SAMTools SNP 856048 856048 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 856087 856087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold150 SAMTools SNP 858157 858157 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold150 SAMTools SNP 873748 873748 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 873787 873787 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C0.42%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 876839 876839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C9%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold150 SAMTools SNP 877101 877101 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold150 SAMTools SNP 878578 878578 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold150 SAMTools SNP 878600 878600 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold150 SAMTools SNP 884548 884548 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.00089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold150 SAMTools SNP 884816 884816 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C185:99 scaffold150 SAMTools SNP 889021 889021 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C12%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C5.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 889091 889091 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 892755 892755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C40%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold150 SAMTools SNP 892833 892833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold150 SAMTools SNP 899475 899475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C5%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 899573 899573 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold150 SAMTools SNP 899850 899850 64.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C6%2C0:10 scaffold150 SAMTools SNP 899880 899880 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 900594 900594 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 900625 900625 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 901291 901291 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 901363 901363 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold150 SAMTools SNP 901409 901409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 901411 901411 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 902140 902140 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.061%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold150 SAMTools SNP 902494 902494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold150 SAMTools SNP 903915 903915 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C52%2C5%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.15%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold150 SAMTools SNP 903966 903966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C0.4%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold150 SAMTools SNP 904540 904540 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold150 SAMTools SNP 904558 904558 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold150 SAMTools SNP 904697 904697 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C26%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold150 SAMTools SNP 905100 905100 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C30%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.56%2C1%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold150 SAMTools SNP 905122 905122 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C239:99 scaffold150 SAMTools SNP 905419 905419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 906136 906136 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C84%2C27%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.32%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 906403 906403 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold150 SAMTools SNP 910880 910880 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C160%2C0:99 scaffold150 SAMTools SNP 911073 911073 18.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold150 SAMTools SNP 912545 912545 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C78%2C6%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 912580 912580 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold150 SAMTools SNP 915635 915635 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 915636 915636 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 939959 939959 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.036%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold150 SAMTools SNP 940433 940433 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.39%2C6.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C222:40 scaffold150 SAMTools SNP 954296 954296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C17%2C29%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C62%2C0:99 scaffold150 SAMTools SNP 954478 954478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold150 SAMTools SNP 954508 954508 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold150 SAMTools SNP 954751 954751 66.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold150 SAMTools SNP 959204 959204 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C222:43 scaffold150 SAMTools SNP 959211 959211 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C0.06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C254:99 scaffold150 SAMTools SNP 964648 964648 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold150 SAMTools SNP 972085 972085 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 994349 994349 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 994356 994356 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold150 SAMTools SNP 1002609 1002609 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold150 SAMTools SNP 1004376 1004376 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold150 SAMTools SNP 1004410 1004410 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold150 SAMTools SNP 1004721 1004721 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C147:44 scaffold150 SAMTools SNP 1004968 1004968 39.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold150 SAMTools SNP 1010694 1010694 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C51%2C0:99 scaffold150 SAMTools SNP 1010847 1010847 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold150 SAMTools SNP 1011041 1011041 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.36%2C0.34%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C240:99 scaffold150 SAMTools SNP 1023268 1023268 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1035397 1035397 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold150 SAMTools SNP 1036286 1036286 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1036294 1036294 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1037179 1037179 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C21%2C0:39 scaffold150 SAMTools SNP 1037983 1037983 27.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold150 SAMTools SNP 1042125 1042125 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.4%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold150 SAMTools SNP 1043055 1043055 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold150 SAMTools SNP 1044576 1044576 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold150 SAMTools SNP 1044738 1044738 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold150 SAMTools SNP 1044879 1044879 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.046%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold150 SAMTools SNP 1044883 1044883 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold150 SAMTools SNP 1044895 1044895 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold150 SAMTools SNP 1044970 1044970 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C149:99 scaffold150 SAMTools SNP 1045214 1045214 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold150 SAMTools SNP 1045522 1045522 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold150 SAMTools SNP 1045731 1045731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1045773 1045773 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold150 SAMTools SNP 1045788 1045788 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.64%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold150 SAMTools SNP 1045984 1045984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.044%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1046032 1046032 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold150 SAMTools SNP 1046053 1046053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold150 SAMTools SNP 1046433 1046433 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C21%2C0:39 scaffold150 SAMTools SNP 1047061 1047061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1047192 1047192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1047364 1047364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold150 SAMTools SNP 1047382 1047382 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1048394 1048394 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold150 SAMTools SNP 1048472 1048472 222 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C245%2C27%2C242:99 scaffold150 SAMTools SNP 1048809 1048809 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.48%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold150 SAMTools SNP 1048816 1048816 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold150 SAMTools SNP 1049121 1049121 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C0.45%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold150 SAMTools SNP 1049502 1049502 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold150 SAMTools SNP 1049661 1049661 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold150 SAMTools SNP 1049686 1049686 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C116:99 scaffold150 SAMTools SNP 1049857 1049857 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold150 SAMTools SNP 1049877 1049877 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1050184 1050184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.43%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold150 SAMTools SNP 1050235 1050235 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold150 SAMTools SNP 1050666 1050666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold150 SAMTools SNP 1051109 1051109 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C220:99 scaffold150 SAMTools SNP 1051512 1051512 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D2.2e-05%2C6.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold150 SAMTools SNP 1051547 1051547 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold150 SAMTools SNP 1051574 1051574 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C220:91 scaffold150 SAMTools SNP 1051813 1051813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold150 SAMTools SNP 1052334 1052334 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold150 SAMTools SNP 1052335 1052335 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold150 SAMTools SNP 1052809 1052809 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.2%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold150 SAMTools SNP 1052874 1052874 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold150 SAMTools SNP 1052961 1052961 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1053430 1053430 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1053740 1053740 114 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D40%3BFQ%3D-32%3BPV4%3D1%2C0.25%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C5%2C0:9 scaffold150 SAMTools SNP 1053749 1053749 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold150 SAMTools SNP 1054635 1054635 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D21%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C69%2C0:99 scaffold150 SAMTools SNP 1054815 1054815 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D47%3BFQ%3D77%3BPV4%3D0.46%2C1%2C0.24%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C104:99 scaffold150 SAMTools SNP 1054866 1054866 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C6%3BMQ%3D48%3BFQ%3D166%3BPV4%3D0.029%2C1%2C0.19%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold150 SAMTools SNP 1055111 1055111 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold150 SAMTools SNP 1055132 1055132 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold150 SAMTools SNP 1055914 1055914 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.072%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C218:99 scaffold150 SAMTools SNP 1056032 1056032 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C3%3BMQ%3D46%3BFQ%3D198%3BPV4%3D1%2C1%2C0.033%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold150 SAMTools SNP 1056542 1056542 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C8%2C0%3BMQ%3D40%3BFQ%3D106%3BPV4%3D0.019%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold150 SAMTools SNP 1056605 1056605 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D41%3BFQ%3D92%3BPV4%3D1%2C1%2C0.26%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C192:99 scaffold150 SAMTools SNP 1056636 1056636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C8%2C7%3BMQ%3D44%3BFQ%3D224%3BPV4%3D0.45%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold150 SAMTools SNP 1057970 1057970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C52%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold150 SAMTools SNP 1058033 1058033 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.17%2C0.49%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold150 SAMTools SNP 1058415 1058415 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C17%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.12%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold150 SAMTools SNP 1058424 1058424 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.16%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold150 SAMTools SNP 1058469 1058469 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C22%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C7.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C108:99 scaffold150 SAMTools SNP 1060142 1060142 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C63%2C0:99 scaffold150 SAMTools SNP 1063510 1063510 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1063868 1063868 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C29%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.26%2C0.26%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold150 SAMTools SNP 1063892 1063892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C43%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1063895 1063895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1064118 1064118 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C10%2C33%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.29%2C2.9e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold150 SAMTools SNP 1064737 1064737 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold150 SAMTools SNP 1064755 1064755 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1065132 1065132 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.11%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1065134 1065134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1065140 1065140 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.15%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1065382 1065382 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1067167 1067167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C28%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1067222 1067222 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C35%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold150 SAMTools SNP 1067604 1067604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold150 SAMTools SNP 1067631 1067631 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold150 SAMTools SNP 1068371 1068371 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold150 SAMTools SNP 1069156 1069156 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 1069171 1069171 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold150 SAMTools SNP 1069379 1069379 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold150 SAMTools SNP 1069394 1069394 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold150 SAMTools SNP 1069822 1069822 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold150 SAMTools SNP 1069834 1069834 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.42%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C186:99 scaffold150 SAMTools SNP 1069876 1069876 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold150 SAMTools SNP 1071482 1071482 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold150 SAMTools SNP 1071527 1071527 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1071560 1071560 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1072150 1072150 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1072382 1072382 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C77:80 scaffold150 SAMTools SNP 1077433 1077433 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.35%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold150 SAMTools SNP 1078293 1078293 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold150 SAMTools SNP 1079085 1079085 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1079104 1079104 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1085114 1085114 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1085284 1085284 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold150 SAMTools SNP 1094038 1094038 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1100263 1100263 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold150 SAMTools SNP 1104251 1104251 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C36%2C12%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.43%2C1.4e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold150 SAMTools SNP 1104526 1104526 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C46%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C163%2C0:99 scaffold150 SAMTools SNP 1104841 1104841 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold150 SAMTools SNP 1106596 1106596 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1116691 1116691 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold150 SAMTools SNP 1116829 1116829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold150 SAMTools SNP 1116841 1116841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold150 SAMTools SNP 1117172 1117172 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C4%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold150 SAMTools SNP 1117181 1117181 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold150 SAMTools SNP 1117271 1117271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C45%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold150 SAMTools SNP 1119947 1119947 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C180:99 scaffold150 SAMTools SNP 1128087 1128087 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold150 SAMTools SNP 1128324 1128324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1129044 1129044 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold150 SAMTools SNP 1129066 1129066 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 1129535 1129535 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold150 SAMTools SNP 1130399 1130399 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold150 SAMTools SNP 1130492 1130492 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1130524 1130524 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C125:40 scaffold150 SAMTools SNP 1130720 1130720 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.088%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold150 SAMTools SNP 1130745 1130745 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold150 SAMTools SNP 1131124 1131124 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold150 SAMTools SNP 1131766 1131766 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold150 SAMTools SNP 1132138 1132138 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C222:79 scaffold150 SAMTools SNP 1134221 1134221 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold150 SAMTools SNP 1134239 1134239 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold150 SAMTools SNP 1134836 1134836 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold150 SAMTools SNP 1135533 1135533 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1135542 1135542 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1136474 1136474 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1136668 1136668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1138314 1138314 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1138989 1138989 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold150 SAMTools SNP 1139013 1139013 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold150 SAMTools SNP 1140095 1140095 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold150 SAMTools SNP 1142113 1142113 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C157:99 scaffold150 SAMTools SNP 1142897 1142897 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1144747 1144747 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1150669 1150669 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold150 SAMTools SNP 1151369 1151369 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1151936 1151936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1154077 1154077 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D68.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C96:99 scaffold150 SAMTools SNP 1154836 1154836 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C20:23 scaffold150 SAMTools SNP 1155030 1155030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold150 SAMTools SNP 1155900 1155900 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C30%2C0:57 scaffold150 SAMTools SNP 1156620 1156620 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold150 SAMTools SNP 1156830 1156830 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold150 SAMTools SNP 1156864 1156864 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1157230 1157230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1157496 1157496 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold150 SAMTools SNP 1157503 1157503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold150 SAMTools SNP 1157749 1157749 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold150 SAMTools SNP 1157779 1157779 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold150 SAMTools SNP 1157993 1157993 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold150 SAMTools SNP 1158186 1158186 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold150 SAMTools SNP 1158207 1158207 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold150 SAMTools SNP 1158443 1158443 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1158643 1158643 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold150 SAMTools SNP 1158658 1158658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1158984 1158984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold150 SAMTools SNP 1159011 1159011 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.014%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold150 SAMTools SNP 1159040 1159040 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold150 SAMTools SNP 1159042 1159042 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C63:66 scaffold150 SAMTools SNP 1159067 1159067 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold150 SAMTools SNP 1159168 1159168 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold150 SAMTools SNP 1159500 1159500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold150 SAMTools SNP 1159563 1159563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 1159952 1159952 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1159973 1159973 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold150 SAMTools SNP 1160057 1160057 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.14%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C136:99 scaffold150 SAMTools SNP 1160307 1160307 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1161338 1161338 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1161490 1161490 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1161574 1161574 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1161592 1161592 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1161819 1161819 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1162014 1162014 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1162351 1162351 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold150 SAMTools SNP 1162523 1162523 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0047%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C166:99 scaffold150 SAMTools SNP 1162577 1162577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1165360 1165360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold150 SAMTools SNP 1165424 1165424 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold150 SAMTools SNP 1165551 1165551 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 1165575 1165575 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 1165596 1165596 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold150 SAMTools SNP 1165836 1165836 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C210:99 scaffold150 SAMTools SNP 1166066 1166066 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 1166603 1166603 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1166627 1166627 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1166968 1166968 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold150 SAMTools SNP 1167036 1167036 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold150 SAMTools SNP 1167037 1167037 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold150 SAMTools SNP 1167201 1167201 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold150 SAMTools SNP 1167210 1167210 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold150 SAMTools SNP 1167851 1167851 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.1%2C0.47%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold150 SAMTools SNP 1167884 1167884 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold150 SAMTools SNP 1168269 1168269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1168513 1168513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C0.18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold150 SAMTools SNP 1168812 1168812 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.43%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold150 SAMTools SNP 1169140 1169140 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1169181 1169181 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1170646 1170646 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1172748 1172748 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.48%3BPV4%3D1%2C1.4e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C23:26 scaffold150 SAMTools SNP 1179473 1179473 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold150 SAMTools SNP 1179716 1179716 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold150 SAMTools SNP 1180005 1180005 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold150 SAMTools SNP 1180122 1180122 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold150 SAMTools SNP 1180473 1180473 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0047%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C196:99 scaffold150 SAMTools SNP 1180592 1180592 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0015%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold150 SAMTools SNP 1181264 1181264 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold150 SAMTools SNP 1181965 1181965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold150 SAMTools SNP 1182091 1182091 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold150 SAMTools SNP 1182133 1182133 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1184703 1184703 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold150 SAMTools SNP 1184736 1184736 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold150 SAMTools SNP 1185108 1185108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1186266 1186266 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold150 SAMTools SNP 1188050 1188050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 1188338 1188338 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold150 SAMTools SNP 1188369 1188369 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold150 SAMTools SNP 1188408 1188408 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C42%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold150 SAMTools SNP 1188901 1188901 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold150 SAMTools SNP 1190593 1190593 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold150 SAMTools SNP 1191208 1191208 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C24%2C0:45 scaffold150 SAMTools SNP 1191255 1191255 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1191451 1191451 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.011%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C211:70 scaffold150 SAMTools SNP 1191661 1191661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1191685 1191685 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold150 SAMTools SNP 1191715 1191715 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold150 SAMTools SNP 1192005 1192005 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C0%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold150 SAMTools SNP 1192819 1192819 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0029%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C222:44 scaffold150 SAMTools SNP 1192937 1192937 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.16%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold150 SAMTools SNP 1193513 1193513 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold150 SAMTools SNP 1194285 1194285 7.39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold150 SAMTools SNP 1195941 1195941 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C188:99 scaffold150 SAMTools SNP 1196160 1196160 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold150 SAMTools SNP 1196528 1196528 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.4%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold150 SAMTools SNP 1197806 1197806 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C207%2C37%2C162%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.72%2C2.1e-274%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold150 SAMTools SNP 1197932 1197932 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C56%2C11%2C5%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0085%2C0.39%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold150 SAMTools SNP 1197977 1197977 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C86%2C35%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1198152 1198152 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C25%2C2%2C16%3BMQ%3D50%3BFQ%3D59%3BPV4%3D3.9e-08%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold150 SAMTools SNP 1199114 1199114 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C176%2C82%2C22%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1e-09%2C0.41%2C1%2C1.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold150 SAMTools SNP 1199217 1199217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C84%2C57%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1201503 1201503 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C32%2C340%2C41%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold150 SAMTools SNP 1201848 1201848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5635%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D18%2C0%2C5069%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C7.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1202445 1202445 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D896%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C0.0028%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C35:38 scaffold150 SAMTools SNP 1202461 1202461 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C114%2C0:99 scaffold150 SAMTools SNP 1202554 1202554 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D649%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D261%2C135%2C219%2C25%3BMQ%3D50%3BFQ%3D71%3BPV4%3D3e-12%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold150 SAMTools SNP 1202634 1202634 50.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D866%3BVDB%3D0.0367%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.29%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C15:18 scaffold150 SAMTools SNP 1202697 1202697 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D952%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D255%2C209%2C84%2C241%3BMQ%3D50%3BFQ%3D91%3BPV4%3D2.9e-16%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold150 SAMTools SNP 1202712 1202712 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D973%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold150 SAMTools SNP 1202829 1202829 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D733%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C63%2C0:99 scaffold150 SAMTools SNP 1204153 1204153 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold150 SAMTools SNP 1204696 1204696 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1206458 1206458 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold150 SAMTools SNP 1206468 1206468 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold150 SAMTools SNP 1207042 1207042 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold150 SAMTools SNP 1207045 1207045 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C251:70 scaffold150 SAMTools SNP 1208939 1208939 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold150 SAMTools SNP 1208948 1208948 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.55%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold150 SAMTools SNP 1209176 1209176 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.32%2C0.028%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold150 SAMTools SNP 1209303 1209303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold150 SAMTools SNP 1209350 1209350 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold150 SAMTools SNP 1210000 1210000 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold150 SAMTools SNP 1210007 1210007 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold150 SAMTools SNP 1210389 1210389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1211088 1211088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1211119 1211119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold150 SAMTools SNP 1211143 1211143 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold150 SAMTools SNP 1211161 1211161 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1211416 1211416 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold150 SAMTools SNP 1211697 1211697 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1212173 1212173 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1212213 1212213 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 1212363 1212363 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold150 SAMTools SNP 1212414 1212414 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C39%2C0:75 scaffold150 SAMTools SNP 1213300 1213300 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1213743 1213743 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C210:69 scaffold150 SAMTools SNP 1213764 1213764 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold150 SAMTools SNP 1216484 1216484 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold150 SAMTools SNP 1217783 1217783 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold150 SAMTools SNP 1220247 1220247 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold150 SAMTools SNP 1221620 1221620 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold150 SAMTools SNP 1223517 1223517 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1231638 1231638 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold150 SAMTools SNP 1231695 1231695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 1231824 1231824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1233629 1233629 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold150 SAMTools SNP 1238771 1238771 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00062%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold150 SAMTools SNP 1244364 1244364 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D87.3%3BPV4%3D1%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C119:99 scaffold150 SAMTools SNP 1244564 1244564 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C4.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold150 SAMTools SNP 1245500 1245500 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C30%2C0:57 scaffold150 SAMTools SNP 1245527 1245527 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold150 SAMTools SNP 1251343 1251343 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1252167 1252167 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1252188 1252188 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold150 SAMTools SNP 1252216 1252216 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold150 SAMTools SNP 1252901 1252901 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C24%2C0:45 scaffold150 SAMTools SNP 1252955 1252955 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1253517 1253517 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1253518 1253518 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1253717 1253717 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold150 SAMTools SNP 1275712 1275712 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C12%2C0%3BMQ%3D49%3BFQ%3D70%3BPV4%3D0.063%2C2e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C244:99 scaffold150 SAMTools SNP 1276062 1276062 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold150 SAMTools SNP 1276811 1276811 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C2%3BMQ%3D38%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C203:28 scaffold150 SAMTools SNP 1280534 1280534 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold150 SAMTools SNP 1281735 1281735 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C9%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.19%2C3.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold150 SAMTools SNP 1281953 1281953 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C24%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C154%2C0:99 scaffold150 SAMTools SNP 1282068 1282068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold150 SAMTools SNP 1282094 1282094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C22%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold150 SAMTools SNP 1283365 1283365 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C32%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold150 SAMTools SNP 1283390 1283390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1286288 1286288 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1286624 1286624 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C69%2C44%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1286792 1286792 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C66%2C140%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1287569 1287569 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C53%2C120%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1288808 1288808 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold150 SAMTools SNP 1289520 1289520 196 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C252%2C0%2C249:39 scaffold150 SAMTools SNP 1290068 1290068 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold150 SAMTools SNP 1290128 1290128 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1290665 1290665 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.56%2C5.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C176:99 scaffold150 SAMTools SNP 1290791 1290791 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.65%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold150 SAMTools SNP 1290923 1290923 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C10%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.72%2C2.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold150 SAMTools SNP 1292614 1292614 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1292702 1292702 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1293230 1293230 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.6e-18%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold150 SAMTools SNP 1293304 1293304 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.14%2C1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold150 SAMTools SNP 1301446 1301446 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C173:99 scaffold150 SAMTools SNP 1301474 1301474 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold150 SAMTools SNP 1302870 1302870 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold150 SAMTools SNP 1302873 1302873 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1302915 1302915 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1304211 1304211 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold150 SAMTools SNP 1304299 1304299 48.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold150 SAMTools SNP 1305003 1305003 55.8 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold150 SAMTools SNP 1305006 1305006 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold150 SAMTools SNP 1305012 1305012 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 1305048 1305048 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold150 SAMTools SNP 1305538 1305538 81.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold150 SAMTools SNP 1307382 1307382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1309576 1309576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold150 SAMTools SNP 1341120 1341120 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1341922 1341922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold150 SAMTools SNP 1341988 1341988 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.069%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold150 SAMTools SNP 1342000 1342000 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.64%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold150 SAMTools SNP 1342048 1342048 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1342184 1342184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C10%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold150 SAMTools SNP 1342950 1342950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold150 SAMTools SNP 1343055 1343055 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold150 SAMTools SNP 1343076 1343076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold150 SAMTools SNP 1343449 1343449 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.27%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold150 SAMTools SNP 1343475 1343475 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold150 SAMTools SNP 1343728 1343728 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C4%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold150 SAMTools SNP 1343743 1343743 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.042%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1344225 1344225 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C47%2C0%2C9%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.33%2C0.12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold150 SAMTools SNP 1345964 1345964 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold150 SAMTools SNP 1346092 1346092 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold150 SAMTools SNP 1347873 1347873 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C12%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1.2e-07%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold150 SAMTools SNP 1347891 1347891 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold150 SAMTools SNP 1347909 1347909 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C2%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.2%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold150 SAMTools SNP 1348006 1348006 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C23%3BMQ%3D50%3BFQ%3D25.4%3BPV4%3D1%2C4.3e-19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C53:55 scaffold150 SAMTools SNP 1348046 1348046 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold150 SAMTools SNP 1351192 1351192 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C69%2C0:99 scaffold150 SAMTools SNP 1361301 1361301 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold150 SAMTools SNP 1364050 1364050 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold150 SAMTools SNP 1364088 1364088 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold150 SAMTools SNP 1365524 1365524 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold150 SAMTools SNP 1365716 1365716 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1365717 1365717 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1372849 1372849 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold150 SAMTools SNP 1383912 1383912 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold150 SAMTools SNP 1383969 1383969 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1389803 1389803 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold150 SAMTools SNP 1391300 1391300 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold150 SAMTools SNP 1391966 1391966 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C57%2C53%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.045%2C0.089%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1391995 1391995 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1397680 1397680 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold150 SAMTools SNP 1402670 1402670 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.064%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C221:99 scaffold150 SAMTools SNP 1408042 1408042 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold150 SAMTools SNP 1408084 1408084 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C39%2C3%2C21%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C2.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold150 SAMTools SNP 1408174 1408174 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C153:74 scaffold150 SAMTools SNP 1408201 1408201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold150 SAMTools SNP 1408365 1408365 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1411121 1411121 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold150 SAMTools SNP 1411168 1411168 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold150 SAMTools SNP 1411703 1411703 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.44%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold150 SAMTools SNP 1411837 1411837 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1412112 1412112 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.43%2C0.066%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C198:69 scaffold150 SAMTools SNP 1412176 1412176 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold150 SAMTools SNP 1412729 1412729 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold150 SAMTools SNP 1422718 1422718 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold150 SAMTools SNP 1423731 1423731 27.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold150 SAMTools SNP 1430867 1430867 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold150 SAMTools SNP 1431160 1431160 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1432878 1432878 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold150 SAMTools SNP 1434395 1434395 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold150 SAMTools SNP 1434547 1434547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1434619 1434619 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.023%2C0.33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C214:99 scaffold150 SAMTools SNP 1436838 1436838 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C26%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C3.5e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1436958 1436958 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1444718 1444718 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold150 SAMTools SNP 1451721 1451721 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold150 SAMTools SNP 1452069 1452069 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C32%2C13%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold150 SAMTools SNP 1452142 1452142 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C6%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold150 SAMTools SNP 1452199 1452199 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-06%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1454105 1454105 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-05%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1456806 1456806 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold150 SAMTools SNP 1457340 1457340 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C0%2C151%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.1e-234%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold150 SAMTools SNP 1457397 1457397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C0.47%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold150 SAMTools SNP 1458242 1458242 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C242:99 scaffold150 SAMTools SNP 1458285 1458285 205 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C36%2C6%2C218%2C0%2C215:57 scaffold150 SAMTools SNP 1458308 1458308 54.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold150 SAMTools SNP 1462474 1462474 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold150 SAMTools SNP 1464092 1464092 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C11%2C57%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1466094 1466094 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1466357 1466357 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1466395 1466395 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold150 SAMTools SNP 1466408 1466408 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1466522 1466522 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C12%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C0.37%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1467466 1467466 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.16%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold150 SAMTools SNP 1467853 1467853 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold150 SAMTools SNP 1467871 1467871 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold150 SAMTools SNP 1468041 1468041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1471592 1471592 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D27%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0014%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C167:28 scaffold150 SAMTools SNP 1471612 1471612 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.19%2C0.061%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C252:39 scaffold150 SAMTools SNP 1475380 1475380 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C36%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.48%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1475503 1475503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1478909 1478909 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C1%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.05%2C0.00037%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold150 SAMTools SNP 1484230 1484230 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold150 SAMTools SNP 1499665 1499665 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold150 SAMTools SNP 1510997 1510997 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold150 SAMTools SNP 1511317 1511317 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1511327 1511327 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold150 SAMTools SNP 1517671 1517671 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0042%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold150 SAMTools SNP 1519888 1519888 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold150 SAMTools SNP 1519906 1519906 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold150 SAMTools SNP 1534354 1534354 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold150 SAMTools SNP 1534366 1534366 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C213:60 scaffold150 SAMTools SNP 1534393 1534393 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C27%2C0:51 scaffold150 SAMTools SNP 1535474 1535474 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C6%3BMQ%3D49%3BFQ%3D105%3BPV4%3D1%2C0.32%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold150 SAMTools SNP 1536239 1536239 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold150 SAMTools SNP 1536266 1536266 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1537461 1537461 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold150 SAMTools SNP 1550834 1550834 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold150 SAMTools SNP 1550846 1550846 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.037%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold150 SAMTools SNP 1550852 1550852 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold150 SAMTools SNP 1552474 1552474 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold150 SAMTools SNP 1559607 1559607 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold150 SAMTools SNP 1559901 1559901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1562855 1562855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold150 SAMTools SNP 1566216 1566216 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold150 SAMTools SNP 1566241 1566241 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1567989 1567989 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.17%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1568788 1568788 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.16%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold150 SAMTools SNP 1568849 1568849 14.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold150 SAMTools SNP 1568928 1568928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1568939 1568939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold150 SAMTools SNP 1570769 1570769 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C17%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold150 SAMTools SNP 1570817 1570817 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1572168 1572168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold150 SAMTools SNP 1572454 1572454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C10%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold150 SAMTools SNP 1595979 1595979 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold150 SAMTools SNP 1596737 1596737 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold150 SAMTools SNP 1597249 1597249 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold150 SAMTools SNP 1605343 1605343 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1610484 1610484 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1610501 1610501 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold150 SAMTools SNP 1615472 1615472 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold150 SAMTools SNP 1616247 1616247 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.56%2C0.0036%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold150 SAMTools SNP 1616248 1616248 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.56%2C0.38%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold150 SAMTools SNP 1617233 1617233 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold150 SAMTools SNP 1617315 1617315 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C32%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D2.3e-05%2C1e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold150 SAMTools SNP 1626701 1626701 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1626713 1626713 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C61%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1626950 1626950 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1627139 1627139 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0012%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C229:44 scaffold150 SAMTools SNP 1627331 1627331 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.021%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold150 SAMTools SNP 1627337 1627337 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.05%2C1%2C1%2C5.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold150 SAMTools SNP 1627370 1627370 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold150 SAMTools SNP 1627697 1627697 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold150 SAMTools SNP 1632567 1632567 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold150 SAMTools SNP 1633085 1633085 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold150 SAMTools SNP 1633153 1633153 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1633933 1633933 52.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold150 SAMTools SNP 1634459 1634459 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C166%2C0:99 scaffold150 SAMTools SNP 1634495 1634495 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C168:62 scaffold150 SAMTools SNP 1634522 1634522 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold150 SAMTools SNP 1634955 1634955 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C64:67 scaffold150 SAMTools SNP 1635081 1635081 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C64%2C62%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1635093 1635093 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C78%2C64%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1635651 1635651 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0073%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C9:12 scaffold150 SAMTools SNP 1635654 1635654 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C79:82 scaffold150 SAMTools SNP 1636714 1636714 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C1%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1636768 1636768 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1637783 1637783 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1637816 1637816 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1638299 1638299 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold150 SAMTools SNP 1638308 1638308 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold150 SAMTools SNP 1638608 1638608 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1638619 1638619 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1638628 1638628 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold150 SAMTools SNP 1639219 1639219 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.099%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold150 SAMTools SNP 1639227 1639227 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold150 SAMTools SNP 1639265 1639265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold150 SAMTools SNP 1639274 1639274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C216%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold150 SAMTools SNP 1639553 1639553 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D307%2C22%2C91%2C7%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.82%2C0.37%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold150 SAMTools SNP 1639559 1639559 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C11%2C240%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1639577 1639577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C49%2C144%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1644033 1644033 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold150 SAMTools SNP 1652101 1652101 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.0068%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C248:31 scaffold150 SAMTools SNP 1670999 1670999 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.003%2C0.00027%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C222:47 scaffold150 SAMTools SNP 1671358 1671358 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9.9e-13%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C235:48 scaffold150 SAMTools SNP 1671503 1671503 22.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.17%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold150 SAMTools SNP 1671553 1671553 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold150 SAMTools SNP 1671554 1671554 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold150 SAMTools SNP 1675560 1675560 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1675818 1675818 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1675842 1675842 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1680173 1680173 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1680499 1680499 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1684954 1684954 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold150 SAMTools SNP 1684958 1684958 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold150 SAMTools SNP 1685283 1685283 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold150 SAMTools SNP 1685758 1685758 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold150 SAMTools SNP 1685822 1685822 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold150 SAMTools SNP 1686950 1686950 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold150 SAMTools SNP 1698880 1698880 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C18%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.00028%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C239:53 scaffold150 SAMTools SNP 1699090 1699090 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C2%2C189%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1699971 1699971 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D758%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D332%2C12%2C406%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1700658 1700658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C90%2C71%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1701236 1701236 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D959%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D376%2C65%2C442%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.93%2C1%2C0.096%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1701284 1701284 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D555%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C192%2C125%2C204%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-09%2C1%2C0.12%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1701293 1701293 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D742%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C385%2C0%2C201%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D3.2e-25%2C9.2e-60%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold150 SAMTools SNP 1705239 1705239 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1724683 1724683 23.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold150 SAMTools SNP 1729966 1729966 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold150 SAMTools SNP 1731170 1731170 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold150 SAMTools SNP 1732325 1732325 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold150 SAMTools SNP 1732340 1732340 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold150 SAMTools SNP 1733981 1733981 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold150 SAMTools SNP 1734007 1734007 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold150 SAMTools SNP 1734085 1734085 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold150 SAMTools SNP 1734127 1734127 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold150 SAMTools SNP 1734142 1734142 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.0013%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C200:99 scaffold150 SAMTools SNP 1734163 1734163 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold150 SAMTools SNP 1734399 1734399 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold150 SAMTools SNP 1740096 1740096 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold150 SAMTools SNP 1740155 1740155 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C17%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.48%2C3.5e-40%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold150 SAMTools SNP 1741841 1741841 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold150 SAMTools SNP 1741922 1741922 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C35%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.22%2C0.0069%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C43:46 scaffold150 SAMTools SNP 1743300 1743300 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold150 SAMTools SNP 1744623 1744623 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold150 SAMTools SNP 1746829 1746829 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C218:28 scaffold150 SAMTools SNP 1746925 1746925 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.36%2C8.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold150 SAMTools SNP 1746928 1746928 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.33%2C1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold150 SAMTools SNP 1748354 1748354 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C7%3BMQ%3D47%3BFQ%3D32%3BPV4%3D1%2C8e-19%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C182:62 scaffold150 SAMTools SNP 1748609 1748609 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.13%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold150 SAMTools SNP 1749300 1749300 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C51%2C0:96 scaffold150 SAMTools SNP 1750439 1750439 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.9e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C102:51 scaffold150 SAMTools SNP 1751383 1751383 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D286%2C5%2C404%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1752076 1752076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D804%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C396%2C57%2C289%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1752406 1752406 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C29%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold150 SAMTools SNP 1752421 1752421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C27%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1752718 1752718 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C49%2C15%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-05%2C1.4e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1753809 1753809 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C24%2C14%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.017%2C0.48%2C1%2C5.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold150 SAMTools SNP 1754404 1754404 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C62%2C14%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-10%2C3.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold150 SAMTools SNP 1757133 1757133 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.099%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold150 SAMTools SNP 1757194 1757194 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1762410 1762410 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold150 SAMTools SNP 1763016 1763016 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold150 SAMTools SNP 1763512 1763512 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C58:61 scaffold150 SAMTools SNP 1763590 1763590 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.0064%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold150 SAMTools SNP 1764967 1764967 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold150 SAMTools SNP 1764985 1764985 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold150 SAMTools SNP 1765002 1765002 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold150 SAMTools SNP 1803573 1803573 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold150 SAMTools SNP 1821346 1821346 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold150 SAMTools SNP 1823347 1823347 137 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C87%2C69%2C167%2C0%2C160:33 scaffold150 SAMTools SNP 1825188 1825188 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C4%2C45%2C9%3BMQ%3D27%3BFQ%3D3.02%3BPV4%3D0.017%2C1%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C27:30 scaffold150 SAMTools SNP 1825806 1825806 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C46%3BMQ%3D21%3BFQ%3D-77%3BPV4%3D1%2C1%2C0.00042%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C50%2C0:96 scaffold150 SAMTools SNP 1826106 1826106 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D18%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C135%2C0:99 scaffold150 SAMTools SNP 1829543 1829543 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold150 SAMTools SNP 1829886 1829886 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold150 SAMTools SNP 1829938 1829938 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold150 SAMTools SNP 1830124 1830124 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold150 SAMTools SNP 1831372 1831372 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C0.26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C28:31 scaffold150 SAMTools SNP 1831414 1831414 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold150 SAMTools SNP 1832291 1832291 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold150 SAMTools SNP 1832331 1832331 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold150 SAMTools SNP 1834699 1834699 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold150 SAMTools SNP 1834725 1834725 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold150 SAMTools SNP 1834934 1834934 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C7.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C177:74 scaffold150 SAMTools SNP 1844940 1844940 32.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1500 SAMTools SNP 299 299 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1500 SAMTools SNP 9401 9401 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold1500 SAMTools SNP 47847 47847 43.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1500 SAMTools SNP 68629 68629 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1500 SAMTools SNP 148595 148595 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1500 SAMTools SNP 148622 148622 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1500 SAMTools SNP 150284 150284 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C41:44 scaffold1500 SAMTools SNP 150291 150291 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1500 SAMTools SNP 154544 154544 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold1500 SAMTools SNP 154579 154579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1500 SAMTools SNP 172779 172779 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1500 SAMTools SNP 191358 191358 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1500 SAMTools SNP 191489 191489 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1501 SAMTools SNP 508 508 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1501 SAMTools SNP 10927 10927 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1501 SAMTools SNP 10934 10934 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1501 SAMTools SNP 19231 19231 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00023%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C127:72 scaffold1501 SAMTools SNP 20506 20506 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 20524 20524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 22965 22965 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1501 SAMTools SNP 26499 26499 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 26556 26556 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1501 SAMTools SNP 26568 26568 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1501 SAMTools SNP 28048 28048 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C152:99 scaffold1501 SAMTools SNP 28060 28060 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1501 SAMTools SNP 30920 30920 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.28%2C0.048%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1501 SAMTools SNP 32195 32195 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.31%2C0.26%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1501 SAMTools SNP 33145 33145 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1.6e-14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1501 SAMTools SNP 41469 41469 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1501 SAMTools SNP 41762 41762 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1501 SAMTools SNP 42064 42064 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1501 SAMTools SNP 42133 42133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1501 SAMTools SNP 42193 42193 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1501 SAMTools SNP 42213 42213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C19%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1501 SAMTools SNP 44555 44555 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 44556 44556 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 45216 45216 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D586%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C117%2C116%2C244%3BMQ%3D40%3BFQ%3D23%3BPV4%3D0.001%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C192:53 scaffold1501 SAMTools SNP 49821 49821 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C30%2C24%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D9.3e-06%2C1%2C1%2C1.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1501 SAMTools SNP 49972 49972 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1501 SAMTools SNP 50107 50107 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1501 SAMTools SNP 51275 51275 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C59%2C8%3BMQ%3D48%3BFQ%3D-210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C183%2C0:99 scaffold1501 SAMTools SNP 55886 55886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1501 SAMTools SNP 58431 58431 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C7%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.11%2C0.00028%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1501 SAMTools SNP 59765 59765 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C44:47 scaffold1501 SAMTools SNP 60433 60433 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1501 SAMTools SNP 60437 60437 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1501 SAMTools SNP 60443 60443 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 61097 61097 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1501 SAMTools SNP 62020 62020 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C202:99 scaffold1501 SAMTools SNP 62067 62067 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.5%2C0.31%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1501 SAMTools SNP 62124 62124 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.13%2C1.2e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C186:99 scaffold1501 SAMTools SNP 62413 62413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1501 SAMTools SNP 62494 62494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1501 SAMTools SNP 62533 62533 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.062%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1501 SAMTools SNP 62788 62788 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold1501 SAMTools SNP 62929 62929 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1501 SAMTools SNP 62959 62959 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C151:99 scaffold1501 SAMTools SNP 63012 63012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1501 SAMTools SNP 64692 64692 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1501 SAMTools SNP 64760 64760 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1501 SAMTools SNP 65066 65066 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1501 SAMTools SNP 65105 65105 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1501 SAMTools SNP 66303 66303 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C5.3e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C1%2C0:4 scaffold1501 SAMTools SNP 66309 66309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1501 SAMTools SNP 66327 66327 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1501 SAMTools SNP 66815 66815 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C1%2C0:4 scaffold1501 SAMTools SNP 67942 67942 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1501 SAMTools SNP 68334 68334 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1501 SAMTools SNP 68406 68406 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.28%2C1.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1501 SAMTools SNP 68409 68409 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.51%2C2.4e-14%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C204:99 scaffold1501 SAMTools SNP 68466 68466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1501 SAMTools SNP 69036 69036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C18%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1501 SAMTools SNP 69063 69063 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C0.16%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C210:99 scaffold1501 SAMTools SNP 69108 69108 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1501 SAMTools SNP 69586 69586 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1501 SAMTools SNP 70124 70124 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1501 SAMTools SNP 70319 70319 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1501 SAMTools SNP 70654 70654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1501 SAMTools SNP 70681 70681 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1501 SAMTools SNP 81638 81638 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1501 SAMTools SNP 83440 83440 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1501 SAMTools SNP 83455 83455 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1501 SAMTools SNP 83486 83486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1501 SAMTools SNP 83506 83506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1501 SAMTools SNP 84636 84636 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C55%2C3%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1501 SAMTools SNP 85212 85212 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C27%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1501 SAMTools SNP 86591 86591 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1501 SAMTools SNP 87581 87581 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1501 SAMTools SNP 87671 87671 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1501 SAMTools SNP 87987 87987 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C16%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.012%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1501 SAMTools SNP 88462 88462 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1501 SAMTools SNP 88477 88477 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.079%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1501 SAMTools SNP 89058 89058 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C0.21%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1501 SAMTools SNP 89937 89937 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1501 SAMTools SNP 90036 90036 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1501 SAMTools SNP 91006 91006 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1501 SAMTools SNP 91011 91011 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C7%3BMQ%3D47%3BFQ%3D117%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C144:99 scaffold1501 SAMTools SNP 91050 91050 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D45%3BFQ%3D105%3BPV4%3D0.52%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C132:99 scaffold1501 SAMTools SNP 91409 91409 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D45%3BFQ%3D6.2%3BPV4%3D0.47%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C210:31 scaffold1501 SAMTools SNP 92088 92088 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold1501 SAMTools SNP 92091 92091 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1503 SAMTools SNP 3598 3598 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 3826 3826 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1503 SAMTools SNP 4903 4903 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1503 SAMTools SNP 5050 5050 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C2.5e-13%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C140:82 scaffold1503 SAMTools SNP 5314 5314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 5636 5636 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1503 SAMTools SNP 8395 8395 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C9%2C0:16 scaffold1503 SAMTools SNP 9321 9321 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold1503 SAMTools SNP 11681 11681 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1503 SAMTools SNP 11693 11693 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1503 SAMTools SNP 11705 11705 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 11717 11717 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1503 SAMTools SNP 12005 12005 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1503 SAMTools SNP 12034 12034 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1503 SAMTools SNP 12044 12044 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 12100 12100 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 12464 12464 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1503 SAMTools SNP 12476 12476 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1503 SAMTools SNP 12497 12497 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1503 SAMTools SNP 15851 15851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1503 SAMTools SNP 15866 15866 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1503 SAMTools SNP 15965 15965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1503 SAMTools SNP 15992 15992 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1503 SAMTools SNP 17491 17491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1503 SAMTools SNP 17588 17588 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C11%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1503 SAMTools SNP 19023 19023 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1503 SAMTools SNP 19038 19038 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C9%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1503 SAMTools SNP 19445 19445 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D36%2C41%2C9%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0027%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1503 SAMTools SNP 19642 19642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C17%2C17%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0067%2C0.25%2C1%2C8.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1503 SAMTools SNP 19705 19705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1503 SAMTools SNP 22549 22549 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0055%2C0.22%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1503 SAMTools SNP 22573 22573 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1503 SAMTools SNP 22725 22725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C47%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1503 SAMTools SNP 22764 22764 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 22776 22776 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.083%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1503 SAMTools SNP 22986 22986 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C14%2C10%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1503 SAMTools SNP 22989 22989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C55%2C10%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.023%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1503 SAMTools SNP 22992 22992 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1503 SAMTools SNP 23061 23061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1503 SAMTools SNP 23972 23972 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.26%2C0.17%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C243:99 scaffold1503 SAMTools SNP 24031 24031 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C29%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1503 SAMTools SNP 24340 24340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C29%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1503 SAMTools SNP 24510 24510 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1503 SAMTools SNP 24540 24540 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1503 SAMTools SNP 24567 24567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1503 SAMTools SNP 25167 25167 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 25176 25176 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 25195 25195 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1503 SAMTools SNP 25745 25745 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C4%2C85%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C6.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 25766 25766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C17%2C112%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 26239 26239 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C113%2C5%2C60%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1503 SAMTools SNP 26240 26240 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C62%2C15%2C113%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.46%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C245:99 scaffold1503 SAMTools SNP 26267 26267 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C58%2C17%2C113%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.22%2C2e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1503 SAMTools SNP 26509 26509 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C16%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1503 SAMTools SNP 26907 26907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1503 SAMTools SNP 27131 27131 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1503 SAMTools SNP 27159 27159 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1503 SAMTools SNP 27173 27173 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1503 SAMTools SNP 27284 27284 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C47%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1503 SAMTools SNP 27593 27593 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1503 SAMTools SNP 27652 27652 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 28140 28140 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1503 SAMTools SNP 28260 28260 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1503 SAMTools SNP 28461 28461 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C1%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1503 SAMTools SNP 28989 28989 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C236:99 scaffold1503 SAMTools SNP 29016 29016 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C5.5e-14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C237:83 scaffold1503 SAMTools SNP 39789 39789 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1503 SAMTools SNP 39813 39813 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1503 SAMTools SNP 39831 39831 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1503 SAMTools SNP 42249 42249 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2.7e-14%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C243:39 scaffold1503 SAMTools SNP 42275 42275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.39%2C0.32%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1503 SAMTools SNP 42324 42324 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.42%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 42607 42607 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1503 SAMTools SNP 42673 42673 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1503 SAMTools SNP 42683 42683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1503 SAMTools SNP 45578 45578 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C29%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1503 SAMTools SNP 45724 45724 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C108%2C0:99 scaffold1503 SAMTools SNP 49563 49563 52.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1503 SAMTools SNP 49608 49608 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1503 SAMTools SNP 49635 49635 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C30%2C0:57 scaffold1503 SAMTools SNP 52511 52511 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 56035 56035 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 56050 56050 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C15%2C0:27 scaffold1503 SAMTools SNP 58729 58729 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1503 SAMTools SNP 58737 58737 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold1503 SAMTools SNP 58762 58762 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.45%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold1503 SAMTools SNP 59472 59472 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1503 SAMTools SNP 59741 59741 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.0016%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1503 SAMTools SNP 60024 60024 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 60285 60285 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1503 SAMTools SNP 60303 60303 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1503 SAMTools SNP 60333 60333 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1503 SAMTools SNP 61048 61048 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1503 SAMTools SNP 61066 61066 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C237:68 scaffold1503 SAMTools SNP 61263 61263 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C16%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.46%2C0.031%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold1503 SAMTools SNP 61599 61599 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1503 SAMTools SNP 62239 62239 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1503 SAMTools SNP 62754 62754 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 62766 62766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 62940 62940 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 63226 63226 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 63851 63851 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 64159 64159 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1503 SAMTools SNP 67626 67626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C15%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1503 SAMTools SNP 68400 68400 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C30%2C0:57 scaffold1503 SAMTools SNP 71230 71230 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 71379 71379 64.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold1503 SAMTools SNP 71448 71448 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.66%2C1.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1503 SAMTools SNP 71811 71811 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1503 SAMTools SNP 76146 76146 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1503 SAMTools SNP 76180 76180 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1503 SAMTools SNP 76613 76613 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.2%2C0.00075%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C249:60 scaffold1503 SAMTools SNP 76703 76703 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1503 SAMTools SNP 76736 76736 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C171:57 scaffold1503 SAMTools SNP 77042 77042 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1503 SAMTools SNP 77809 77809 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1503 SAMTools SNP 80217 80217 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1503 SAMTools SNP 80828 80828 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C228:69 scaffold1503 SAMTools SNP 80934 80934 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.43%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C197:69 scaffold1503 SAMTools SNP 81283 81283 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.4%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C119:53 scaffold1503 SAMTools SNP 81347 81347 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1503 SAMTools SNP 82619 82619 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 83207 83207 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1503 SAMTools SNP 95557 95557 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1503 SAMTools SNP 96998 96998 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1503 SAMTools SNP 97030 97030 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1503 SAMTools SNP 97111 97111 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C113:99 scaffold1503 SAMTools SNP 97351 97351 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C113:99 scaffold1503 SAMTools SNP 97862 97862 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1503 SAMTools SNP 97893 97893 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.16%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1503 SAMTools SNP 98670 98670 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 98678 98678 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 99003 99003 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 99204 99204 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1503 SAMTools SNP 99249 99249 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1503 SAMTools SNP 102582 102582 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1503 SAMTools SNP 102746 102746 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C21%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.32%2C1.5e-31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C221:61 scaffold1503 SAMTools SNP 107516 107516 70.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold1503 SAMTools SNP 107602 107602 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1503 SAMTools SNP 107751 107751 85.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1503 SAMTools SNP 107923 107923 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.0001%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C26:29 scaffold1503 SAMTools SNP 107997 107997 79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D75.8%3BPV4%3D1%2C5e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C104:99 scaffold1503 SAMTools SNP 108193 108193 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1503 SAMTools SNP 108344 108344 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1503 SAMTools SNP 112448 112448 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.25%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1503 SAMTools SNP 115253 115253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold1503 SAMTools SNP 115277 115277 221 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C42%2C0:81 scaffold1503 SAMTools SNP 115366 115366 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1503 SAMTools SNP 115821 115821 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1503 SAMTools SNP 116316 116316 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1503 SAMTools SNP 116343 116343 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C0.045%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C101:99 scaffold1503 SAMTools SNP 116382 116382 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1503 SAMTools SNP 116416 116416 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1503 SAMTools SNP 118002 118002 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 118008 118008 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 118736 118736 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 118762 118762 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 118780 118780 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 118825 118825 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 119464 119464 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1503 SAMTools SNP 119494 119494 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1503 SAMTools SNP 119554 119554 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold1503 SAMTools SNP 120137 120137 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C187:99 scaffold1503 SAMTools SNP 120361 120361 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1503 SAMTools SNP 120835 120835 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 121107 121107 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 121356 121356 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 122528 122528 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 122639 122639 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1503 SAMTools SNP 127088 127088 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 127177 127177 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.092%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1503 SAMTools SNP 129196 129196 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1503 SAMTools SNP 129562 129562 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1503 SAMTools SNP 129594 129594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1503 SAMTools SNP 130140 130140 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C9.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold1503 SAMTools SNP 130155 130155 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0022%2C0.0015%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C171:99 scaffold1503 SAMTools SNP 130160 130160 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00058%2C0.05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C186:99 scaffold1503 SAMTools SNP 132604 132604 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1503 SAMTools SNP 132762 132762 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1503 SAMTools SNP 132780 132780 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1503 SAMTools SNP 132822 132822 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00016%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1503 SAMTools SNP 133275 133275 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1503 SAMTools SNP 134737 134737 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 135938 135938 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 138106 138106 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1503 SAMTools SNP 138683 138683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1503 SAMTools SNP 138714 138714 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1503 SAMTools SNP 138841 138841 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C13%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00022%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1503 SAMTools SNP 139281 139281 99.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold1503 SAMTools SNP 139437 139437 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C36%2C0:69 scaffold1503 SAMTools SNP 139613 139613 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1503 SAMTools SNP 140121 140121 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D61.8%3BPV4%3D0.077%2C3.2e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C103:92 scaffold1503 SAMTools SNP 141272 141272 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1503 SAMTools SNP 141315 141315 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1503 SAMTools SNP 141804 141804 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C72%2C0:99 scaffold1503 SAMTools SNP 143291 143291 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1503 SAMTools SNP 143304 143304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C0%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1503 SAMTools SNP 143478 143478 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C18%2C46%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1503 SAMTools SNP 146602 146602 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 151468 151468 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 151501 151501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C298%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1503 SAMTools SNP 151766 151766 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C170%2C110%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 152289 152289 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 152294 152294 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 152405 152405 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 152964 152964 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 153246 153246 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1503 SAMTools SNP 153382 153382 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1503 SAMTools SNP 153865 153865 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C34%2C75%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.038%2C1%2C0.22%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 154013 154013 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C28%2C22%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.00042%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 154402 154402 80.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.21%2C7.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C8:11 scaffold1503 SAMTools SNP 154736 154736 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 155195 155195 136 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C57%2C0:99 scaffold1503 SAMTools SNP 155360 155360 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C12%2C26%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1503 SAMTools SNP 155371 155371 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C31%2C5%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.088%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1503 SAMTools SNP 155396 155396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C36%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 155456 155456 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1503 SAMTools SNP 156218 156218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C79%2C15%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C0.038%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 156221 156221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C74%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C0.029%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 163763 163763 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1503 SAMTools SNP 164524 164524 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C3%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C181%2C0:99 scaffold1503 SAMTools SNP 165058 165058 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4420%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1334%2C1012%2C1561%2C443%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 165091 165091 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4956%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1084%2C1353%2C1337%2C1115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-12%2C1.2e-261%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 165274 165274 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1503 SAMTools SNP 166163 166163 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C95%2C98%2C144%3BMQ%3D50%3BFQ%3D49%3BPV4%3D3.7e-06%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1503 SAMTools SNP 166299 166299 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C1%2C35%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.62%2C9.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1503 SAMTools SNP 166479 166479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1503 SAMTools SNP 166517 166517 44.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1503 SAMTools SNP 168928 168928 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C18%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C5.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1503 SAMTools SNP 172799 172799 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1503 SAMTools SNP 188548 188548 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C48%2C14%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1503 SAMTools SNP 190061 190061 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 192490 192490 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1503 SAMTools SNP 194103 194103 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1503 SAMTools SNP 194137 194137 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.47%2C0.064%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C220:99 scaffold1503 SAMTools SNP 194613 194613 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1503 SAMTools SNP 195205 195205 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1503 SAMTools SNP 195420 195420 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.013%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1503 SAMTools SNP 195432 195432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1503 SAMTools SNP 195468 195468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1503 SAMTools SNP 196352 196352 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C12%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1503 SAMTools SNP 199621 199621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1503 SAMTools SNP 199672 199672 205 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0%2C227%2C1%2C224:39 scaffold1503 SAMTools SNP 199767 199767 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 200541 200541 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold1503 SAMTools SNP 200571 200571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1503 SAMTools SNP 208626 208626 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1503 SAMTools SNP 208647 208647 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1503 SAMTools SNP 208656 208656 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1503 SAMTools SNP 208662 208662 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1503 SAMTools SNP 210584 210584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 210605 210605 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1503 SAMTools SNP 211156 211156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1506 SAMTools SNP 112 112 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 122 122 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 305 305 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 1148 1148 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C80:56 scaffold1506 SAMTools SNP 1456 1456 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 3568 3568 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1506 SAMTools SNP 3976 3976 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1506 SAMTools SNP 4338 4338 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1506 SAMTools SNP 4534 4534 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C40%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.2e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1506 SAMTools SNP 6377 6377 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1506 SAMTools SNP 6693 6693 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1506 SAMTools SNP 10652 10652 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1506 SAMTools SNP 12658 12658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 12672 12672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C38%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C2.7e-11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 13170 13170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C62%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-13%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 13221 13221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 13654 13654 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C69%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1506 SAMTools SNP 13711 13711 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C7%2C61%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1.3e-87%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1506 SAMTools SNP 13741 13741 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C7%2C61%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.26%2C4.7e-139%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1506 SAMTools SNP 13794 13794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1506 SAMTools SNP 13795 13795 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C91%2C0%2C56%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0086%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1506 SAMTools SNP 14248 14248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 15231 15231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1506 SAMTools SNP 15740 15740 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C26%2C0%2C26%3BMQ%3D50%3BFQ%3D177%3BPV4%3D2.4e-07%2C0.11%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1506 SAMTools SNP 16095 16095 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C16%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.8e-08%2C0.065%2C0.16%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 16107 16107 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C40%3BMQ%3D48%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1506 SAMTools SNP 18190 18190 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C33%2C10%2C34%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.48%2C0.0045%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1506 SAMTools SNP 19993 19993 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D29%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C63%2C0:99 scaffold1506 SAMTools SNP 21415 21415 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0:51 scaffold1506 SAMTools SNP 21987 21987 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C10%2C8%2C6%3BMQ%3D23%3BFQ%3D7.98%3BPV4%3D0.51%2C1.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C42:36 scaffold1506 SAMTools SNP 25320 25320 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C68%2C6%2C9%3BMQ%3D34%3BFQ%3D53%3BPV4%3D0.19%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1506 SAMTools SNP 31579 31579 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C7%2C19%3BMQ%3D22%3BFQ%3D84%3BPV4%3D0.23%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C174:99 scaffold1506 SAMTools SNP 31622 31622 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C6%2C11%3BMQ%3D34%3BFQ%3D103%3BPV4%3D0.31%2C0.45%2C0.33%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1506 SAMTools SNP 31756 31756 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C60%2C0:99 scaffold1506 SAMTools SNP 42241 42241 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1506 SAMTools SNP 42259 42259 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1506 SAMTools SNP 42966 42966 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 43593 43593 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 43609 43609 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 43658 43658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 43705 43705 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 44414 44414 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1506 SAMTools SNP 44966 44966 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1506 SAMTools SNP 45119 45119 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C84%2C0:99 scaffold1506 SAMTools SNP 66563 66563 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1508 SAMTools SNP 3007 3007 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1508 SAMTools SNP 6044 6044 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C240%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold1508 SAMTools SNP 11919 11919 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1508 SAMTools SNP 13474 13474 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 21084 21084 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 21602 21602 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1508 SAMTools SNP 21707 21707 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold1508 SAMTools SNP 24567 24567 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1508 SAMTools SNP 24651 24651 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C33%2C0:63 scaffold1508 SAMTools SNP 32875 32875 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1508 SAMTools SNP 33294 33294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1508 SAMTools SNP 33342 33342 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C27%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 33584 33584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C8%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 33596 33596 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 33611 33611 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 33742 33742 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C21%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.056%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1508 SAMTools SNP 34378 34378 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1508 SAMTools SNP 35532 35532 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C16%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C249:99 scaffold1508 SAMTools SNP 40168 40168 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1508 SAMTools SNP 42078 42078 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 48075 48075 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 51414 51414 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1508 SAMTools SNP 56301 56301 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1508 SAMTools SNP 59489 59489 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1508 SAMTools SNP 59792 59792 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 59843 59843 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1508 SAMTools SNP 60311 60311 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1508 SAMTools SNP 60388 60388 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1508 SAMTools SNP 61467 61467 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1508 SAMTools SNP 61844 61844 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 62080 62080 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 62098 62098 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 64966 64966 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1508 SAMTools SNP 65002 65002 60.3 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C23%2C8%2C86%2C0%2C83:27 scaffold1508 SAMTools SNP 66771 66771 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1508 SAMTools SNP 71434 71434 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1508 SAMTools SNP 80652 80652 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.077%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1508 SAMTools SNP 80958 80958 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1508 SAMTools SNP 81004 81004 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 81064 81064 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1508 SAMTools SNP 81073 81073 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1508 SAMTools SNP 81404 81404 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 81846 81846 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 81860 81860 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 81907 81907 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 81916 81916 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 82564 82564 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1508 SAMTools SNP 82570 82570 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1508 SAMTools SNP 82627 82627 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold1508 SAMTools SNP 82893 82893 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.54%2C2.4e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1508 SAMTools SNP 82910 82910 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.013%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1508 SAMTools SNP 82961 82961 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1508 SAMTools SNP 83574 83574 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.024%2C1%2C1%2C3.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1508 SAMTools SNP 83604 83604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1508 SAMTools SNP 83634 83634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C21%2C55%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.68%2C0.073%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold1508 SAMTools SNP 85298 85298 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1508 SAMTools SNP 85469 85469 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C11%2C18%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.43%2C1.5e-50%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1508 SAMTools SNP 85612 85612 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C1%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1508 SAMTools SNP 88862 88862 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C21%2C0:39 scaffold1508 SAMTools SNP 90662 90662 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.22%2C0.14%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1508 SAMTools SNP 91341 91341 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0104%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 91455 91455 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 91630 91630 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1508 SAMTools SNP 91687 91687 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 92170 92170 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1508 SAMTools SNP 92416 92416 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C216:99 scaffold1508 SAMTools SNP 92767 92767 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1508 SAMTools SNP 92787 92787 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1508 SAMTools SNP 92812 92812 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 96054 96054 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1508 SAMTools SNP 96063 96063 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 96099 96099 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1508 SAMTools SNP 96123 96123 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1508 SAMTools SNP 96159 96159 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1508 SAMTools SNP 96419 96419 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1508 SAMTools SNP 96446 96446 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 96976 96976 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1508 SAMTools SNP 96985 96985 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1508 SAMTools SNP 97505 97505 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1508 SAMTools SNP 97553 97553 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 98379 98379 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C185:69 scaffold1508 SAMTools SNP 98430 98430 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1508 SAMTools SNP 99285 99285 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1508 SAMTools SNP 99295 99295 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 99324 99324 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1508 SAMTools SNP 100309 100309 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1508 SAMTools SNP 100321 100321 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1508 SAMTools SNP 100360 100360 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1508 SAMTools SNP 100363 100363 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C134:36 scaffold1508 SAMTools SNP 100399 100399 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1508 SAMTools SNP 100947 100947 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1508 SAMTools SNP 100965 100965 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C188:99 scaffold1508 SAMTools SNP 101037 101037 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C16%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.33%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1508 SAMTools SNP 101387 101387 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1508 SAMTools SNP 101392 101392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1508 SAMTools SNP 102591 102591 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1508 SAMTools SNP 102735 102735 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 102768 102768 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1508 SAMTools SNP 103370 103370 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1508 SAMTools SNP 103380 103380 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1508 SAMTools SNP 103568 103568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1508 SAMTools SNP 103979 103979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1508 SAMTools SNP 104780 104780 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 106227 106227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1508 SAMTools SNP 106741 106741 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1508 SAMTools SNP 107236 107236 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 107257 107257 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 107314 107314 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 107335 107335 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1508 SAMTools SNP 110842 110842 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1508 SAMTools SNP 119393 119393 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.18%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C101:46 scaffold1508 SAMTools SNP 119494 119494 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.018%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1508 SAMTools SNP 119510 119510 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 120793 120793 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 120997 120997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1508 SAMTools SNP 122021 122021 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1508 SAMTools SNP 127347 127347 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1508 SAMTools SNP 127395 127395 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.069%2C1%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1508 SAMTools SNP 127431 127431 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1508 SAMTools SNP 127434 127434 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold1508 SAMTools SNP 127446 127446 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.16%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1508 SAMTools SNP 127823 127823 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1508 SAMTools SNP 129573 129573 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.22%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 129970 129970 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 131046 131046 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1508 SAMTools SNP 131067 131067 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1508 SAMTools SNP 131094 131094 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1508 SAMTools SNP 131530 131530 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C51%2C0:99 scaffold1508 SAMTools SNP 131554 131554 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1508 SAMTools SNP 131590 131590 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1508 SAMTools SNP 132122 132122 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.00061%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1508 SAMTools SNP 132329 132329 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.21%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C186:99 scaffold1508 SAMTools SNP 132579 132579 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C195:99 scaffold1508 SAMTools SNP 133187 133187 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold1508 SAMTools SNP 135170 135170 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1508 SAMTools SNP 136098 136098 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 136648 136648 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.24%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1508 SAMTools SNP 137111 137111 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1508 SAMTools SNP 137119 137119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1508 SAMTools SNP 138228 138228 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1508 SAMTools SNP 139853 139853 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1508 SAMTools SNP 140448 140448 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold1508 SAMTools SNP 140475 140475 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1508 SAMTools SNP 140496 140496 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1508 SAMTools SNP 142061 142061 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1508 SAMTools SNP 142166 142166 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1508 SAMTools SNP 142172 142172 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1508 SAMTools SNP 143157 143157 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1508 SAMTools SNP 146306 146306 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.12%2C0.0016%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1508 SAMTools SNP 149375 149375 140 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1508 SAMTools SNP 149447 149447 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.38%2C0.061%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1508 SAMTools SNP 157429 157429 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1508 SAMTools SNP 161699 161699 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1508 SAMTools SNP 161807 161807 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C247:99 scaffold1508 SAMTools SNP 161811 161811 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C247:99 scaffold1508 SAMTools SNP 162224 162224 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1508 SAMTools SNP 163455 163455 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.024%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C237:99 scaffold1508 SAMTools SNP 163457 163457 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1508 SAMTools SNP 163476 163476 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1508 SAMTools SNP 163500 163500 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1508 SAMTools SNP 164475 164475 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1508 SAMTools SNP 183513 183513 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1509 SAMTools SNP 93789 93789 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1509 SAMTools SNP 93880 93880 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1509 SAMTools SNP 109473 109473 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C22:25 scaffold1509 SAMTools SNP 116614 116614 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1509 SAMTools SNP 116650 116650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C2%3BMQ%3D47%3BFQ%3D-72%3BPV4%3D1%2C1%2C0.36%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1509 SAMTools SNP 127601 127601 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D38%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C84%2C0:99 scaffold1509 SAMTools SNP 133579 133579 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D35%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1509 SAMTools SNP 134147 134147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D43%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1509 SAMTools SNP 134726 134726 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C6%2C5%3BMQ%3D44%3BFQ%3D112%3BPV4%3D0.43%2C1%2C0.019%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1509 SAMTools SNP 134885 134885 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D92%3BPV4%3D3.1e-07%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1509 SAMTools SNP 135359 135359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1509 SAMTools SNP 135445 135445 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C141%2C0:99 scaffold1509 SAMTools SNP 135833 135833 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1509 SAMTools SNP 135845 135845 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1509 SAMTools SNP 137350 137350 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold1509 SAMTools SNP 137410 137410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C48%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1509 SAMTools SNP 137452 137452 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C18%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1509 SAMTools SNP 138033 138033 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1509 SAMTools SNP 138495 138495 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1509 SAMTools SNP 138543 138543 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C18%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold1509 SAMTools SNP 139026 139026 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1509 SAMTools SNP 139029 139029 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1509 SAMTools SNP 139329 139329 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1509 SAMTools SNP 139332 139332 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1509 SAMTools SNP 139356 139356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1509 SAMTools SNP 139881 139881 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C30%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.008%2C0.38%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold1509 SAMTools SNP 141140 141140 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1509 SAMTools SNP 141206 141206 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.27%2C3.3e-06%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1511 SAMTools SNP 34721 34721 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1511 SAMTools SNP 34761 34761 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold1511 SAMTools SNP 37574 37574 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1511 SAMTools SNP 62538 62538 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1511 SAMTools SNP 62570 62570 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1511 SAMTools SNP 84149 84149 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C23:26 scaffold1511 SAMTools SNP 84154 84154 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C23:26 scaffold1511 SAMTools SNP 84229 84229 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C33%2C0:63 scaffold1511 SAMTools SNP 84452 84452 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold1511 SAMTools SNP 84650 84650 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C10%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.23%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C225:99 scaffold1511 SAMTools SNP 85790 85790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1511 SAMTools SNP 88960 88960 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1511 SAMTools SNP 89850 89850 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0019%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1511 SAMTools SNP 90589 90589 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D3.9e-05%2C1.8e-13%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1511 SAMTools SNP 91114 91114 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1511 SAMTools SNP 91120 91120 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1511 SAMTools SNP 91218 91218 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1511 SAMTools SNP 91245 91245 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C223:66 scaffold1511 SAMTools SNP 91535 91535 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.057%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold1511 SAMTools SNP 91547 91547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1511 SAMTools SNP 92468 92468 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1511 SAMTools SNP 92579 92579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1511 SAMTools SNP 93093 93093 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C22%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1511 SAMTools SNP 93150 93150 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1511 SAMTools SNP 93695 93695 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C69%2C5%2C41%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.26%2C4.4e-50%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1511 SAMTools SNP 93893 93893 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C75%2C0:99 scaffold1511 SAMTools SNP 95616 95616 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1511 SAMTools SNP 95658 95658 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.45%2C0.078%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C171:99 scaffold1511 SAMTools SNP 98002 98002 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D46%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C36%2C0:69 scaffold1511 SAMTools SNP 98270 98270 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1511 SAMTools SNP 170974 170974 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1512 SAMTools SNP 854 854 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1512 SAMTools SNP 883 883 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1512 SAMTools SNP 928 928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 7126 7126 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0077%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C124:49 scaffold1512 SAMTools SNP 11876 11876 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1512 SAMTools SNP 77790 77790 26.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1512 SAMTools SNP 104439 104439 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1512 SAMTools SNP 111837 111837 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1512 SAMTools SNP 112248 112248 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 113531 113531 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1512 SAMTools SNP 120470 120470 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C40%2C5%2C4%3BMQ%3D48%3BFQ%3D80%3BPV4%3D0.49%2C1%2C0.41%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1512 SAMTools SNP 121222 121222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C25%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1512 SAMTools SNP 121228 121228 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C24%2C6%2C9%3BMQ%3D48%3BFQ%3D107%3BPV4%3D0.013%2C1%2C0.058%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1512 SAMTools SNP 124221 124221 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold1512 SAMTools SNP 124263 124263 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.014%2C0.32%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1512 SAMTools SNP 124287 124287 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C12%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D5.3e-05%2C0.00014%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1512 SAMTools SNP 127343 127343 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1512 SAMTools SNP 127838 127838 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1512 SAMTools SNP 127864 127864 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1512 SAMTools SNP 127987 127987 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C56%2C14%2C43%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.83%2C4.8e-101%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1512 SAMTools SNP 170770 170770 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.55%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C186:41 scaffold1512 SAMTools SNP 174708 174708 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1512 SAMTools SNP 174741 174741 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 177189 177189 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 177201 177201 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 177240 177240 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1512 SAMTools SNP 177252 177252 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1512 SAMTools SNP 177702 177702 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 177714 177714 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 178134 178134 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1512 SAMTools SNP 178247 178247 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1512 SAMTools SNP 178256 178256 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1512 SAMTools SNP 178721 178721 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C54%2C0:99 scaffold1512 SAMTools SNP 179417 179417 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 179832 179832 144 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C47%2C35%2C171%2C0%2C168:21 scaffold1512 SAMTools SNP 179848 179848 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1512 SAMTools SNP 181724 181724 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1512 SAMTools SNP 181735 181735 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1512 SAMTools SNP 182023 182023 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C10%2C11%3BMQ%3D49%3BFQ%3D107%3BPV4%3D0.057%2C0.27%2C0.3%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1512 SAMTools SNP 194162 194162 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 200494 200494 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 217492 217492 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.6%3BPV4%3D0.4%2C1.5e-05%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C35:38 scaffold1512 SAMTools SNP 218301 218301 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.4%2C0.00049%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C127:51 scaffold1512 SAMTools SNP 220076 220076 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1512 SAMTools SNP 220714 220714 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.13%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1512 SAMTools SNP 221019 221019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1512 SAMTools SNP 221256 221256 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1512 SAMTools SNP 221276 221276 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1512 SAMTools SNP 221602 221602 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 221623 221623 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1512 SAMTools SNP 221916 221916 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1512 SAMTools SNP 225547 225547 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1512 SAMTools SNP 226164 226164 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1512 SAMTools SNP 226197 226197 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 227608 227608 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1512 SAMTools SNP 228774 228774 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1512 SAMTools SNP 229421 229421 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C57%2C5%3BMQ%3D47%3BFQ%3D223%3BPV4%3D0.063%2C1%2C0.19%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1512 SAMTools SNP 229456 229456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C25%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 230117 230117 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1512 SAMTools SNP 230450 230450 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C40%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 230618 230618 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C13%2C27%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.27%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 230641 230641 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C28%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 230840 230840 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C12%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 231277 231277 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1512 SAMTools SNP 231588 231588 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1512 SAMTools SNP 231892 231892 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C53%2C175%2C43%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.73%2C2.3e-298%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1512 SAMTools SNP 240383 240383 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1512 SAMTools SNP 240709 240709 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1512 SAMTools SNP 240769 240769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1512 SAMTools SNP 242221 242221 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C235:99 scaffold1512 SAMTools SNP 242235 242235 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold1512 SAMTools SNP 242271 242271 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1512 SAMTools SNP 244494 244494 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1512 SAMTools SNP 244640 244640 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1512 SAMTools SNP 244675 244675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1512 SAMTools SNP 245951 245951 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1512 SAMTools SNP 245962 245962 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1512 SAMTools SNP 251844 251844 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold1512 SAMTools SNP 253143 253143 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 267547 267547 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C54%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C250%2C0:99 scaffold1512 SAMTools SNP 267683 267683 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1512 SAMTools SNP 298982 298982 4.24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D10%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C8%2C0:7 scaffold1512 SAMTools SNP 299875 299875 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C16%2C1%2C19%3BMQ%3D9%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1512 SAMTools SNP 301359 301359 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C71%3BMQ%3D47%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1512 SAMTools SNP 301506 301506 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C0%2C14%3BMQ%3D49%3BFQ%3D84%3BPV4%3D0.028%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1512 SAMTools SNP 302616 302616 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 303272 303272 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1512 SAMTools SNP 303274 303274 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1512 SAMTools SNP 340688 340688 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1512 SAMTools SNP 353745 353745 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold1512 SAMTools SNP 356015 356015 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1512 SAMTools SNP 356019 356019 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1512 SAMTools SNP 356085 356085 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.079%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1512 SAMTools SNP 357058 357058 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.051%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 357656 357656 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1512 SAMTools SNP 357707 357707 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1512 SAMTools SNP 358249 358249 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C53%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1512 SAMTools SNP 359016 359016 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold1512 SAMTools SNP 359025 359025 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1512 SAMTools SNP 359182 359182 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1512 SAMTools SNP 359964 359964 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1512 SAMTools SNP 359970 359970 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 360103 360103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1512 SAMTools SNP 360179 360179 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1512 SAMTools SNP 361124 361124 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.49%2C0.2%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1512 SAMTools SNP 362052 362052 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.53%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1512 SAMTools SNP 362307 362307 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 363568 363568 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0076%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 364112 364112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 364653 364653 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.45%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1512 SAMTools SNP 364743 364743 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1512 SAMTools SNP 365138 365138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1512 SAMTools SNP 365196 365196 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C22%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C85:88 scaffold1512 SAMTools SNP 366800 366800 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1512 SAMTools SNP 407093 407093 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1512 SAMTools SNP 463607 463607 41.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1512 SAMTools SNP 468592 468592 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1512 SAMTools SNP 475890 475890 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 475893 475893 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 496409 496409 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1512 SAMTools SNP 496469 496469 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 496853 496853 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1512 SAMTools SNP 496880 496880 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C0.34%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1512 SAMTools SNP 496881 496881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1512 SAMTools SNP 497764 497764 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1512 SAMTools SNP 497797 497797 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.014%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold1512 SAMTools SNP 497816 497816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1512 SAMTools SNP 502380 502380 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1512 SAMTools SNP 502695 502695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1512 SAMTools SNP 503702 503702 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1512 SAMTools SNP 504117 504117 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C4%2C36%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 505071 505071 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1512 SAMTools SNP 505535 505535 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.004%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C254:79 scaffold1512 SAMTools SNP 505545 505545 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1512 SAMTools SNP 505575 505575 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.14%2C0.26%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1512 SAMTools SNP 505803 505803 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 505818 505818 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C7%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1512 SAMTools SNP 505830 505830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.001%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 505872 505872 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1512 SAMTools SNP 505887 505887 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 507034 507034 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold1512 SAMTools SNP 507049 507049 117 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C132%2C0%2C130%2C96%2C127:99 scaffold1512 SAMTools SNP 507154 507154 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1512 SAMTools SNP 507172 507172 157 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C47%2C29%2C180%2C0%2C177:33 scaffold1512 SAMTools SNP 507618 507618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1512 SAMTools SNP 508010 508010 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C237:99 scaffold1512 SAMTools SNP 508019 508019 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C221:99 scaffold1512 SAMTools SNP 508055 508055 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C220:99 scaffold1512 SAMTools SNP 508100 508100 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1512 SAMTools SNP 508124 508124 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C1%2C16%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.053%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1512 SAMTools SNP 508518 508518 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1512 SAMTools SNP 509095 509095 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 509134 509134 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1512 SAMTools SNP 509173 509173 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1512 SAMTools SNP 509404 509404 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.033%2C7.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C105:67 scaffold1512 SAMTools SNP 509431 509431 24.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1512 SAMTools SNP 509545 509545 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.29%2C1.1e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C225:99 scaffold1512 SAMTools SNP 509683 509683 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C3:6 scaffold1512 SAMTools SNP 509836 509836 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1512 SAMTools SNP 510019 510019 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C27%2C0:51 scaffold1512 SAMTools SNP 512738 512738 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.6e-28%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C214:39 scaffold1512 SAMTools SNP 515502 515502 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1512 SAMTools SNP 515755 515755 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C60%2C0:99 scaffold1512 SAMTools SNP 516015 516015 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 518808 518808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1512 SAMTools SNP 527426 527426 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1512 SAMTools SNP 528615 528615 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.38%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C247:99 scaffold1512 SAMTools SNP 530514 530514 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1512 SAMTools SNP 531408 531408 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C0%3BMQ%3D46%3BFQ%3D153%3BPV4%3D1%2C0.053%2C0.32%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C180:99 scaffold1512 SAMTools SNP 534116 534116 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C160:48 scaffold1512 SAMTools SNP 535136 535136 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1512 SAMTools SNP 537225 537225 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold1512 SAMTools SNP 539394 539394 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1512 SAMTools SNP 542292 542292 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C16%3BMQ%3D49%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C180:99 scaffold1512 SAMTools SNP 542311 542311 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1512 SAMTools SNP 544971 544971 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold1512 SAMTools SNP 545826 545826 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 546835 546835 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0078%2C0.0014%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1512 SAMTools SNP 546960 546960 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.034%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1512 SAMTools SNP 547598 547598 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C125%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1512 SAMTools SNP 547802 547802 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.19%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 547811 547811 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 548128 548128 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1512 SAMTools SNP 548140 548140 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold1512 SAMTools SNP 548164 548164 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1512 SAMTools SNP 548167 548167 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1512 SAMTools SNP 548224 548224 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1512 SAMTools SNP 548257 548257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1512 SAMTools SNP 550885 550885 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1512 SAMTools SNP 551791 551791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1512 SAMTools SNP 551802 551802 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C107%2C0%2C19%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C198:61 scaffold1512 SAMTools SNP 557616 557616 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.007%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C121:46 scaffold1512 SAMTools SNP 577015 577015 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold1512 SAMTools SNP 577364 577364 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1512 SAMTools SNP 577422 577422 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1512 SAMTools SNP 578219 578219 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C163%2C0:99 scaffold1512 SAMTools SNP 578407 578407 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.12%2C5.1e-15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C232:53 scaffold1512 SAMTools SNP 578479 578479 178 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C164:99 scaffold1512 SAMTools SNP 578612 578612 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1512 SAMTools SNP 578620 578620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1512 SAMTools SNP 582236 582236 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1512 SAMTools SNP 582254 582254 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1512 SAMTools SNP 582497 582497 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold1512 SAMTools SNP 583038 583038 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1512 SAMTools SNP 583099 583099 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.039%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold1512 SAMTools SNP 583329 583329 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1512 SAMTools SNP 583374 583374 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold1512 SAMTools SNP 583515 583515 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1512 SAMTools SNP 583530 583530 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1512 SAMTools SNP 585232 585232 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1512 SAMTools SNP 586978 586978 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1512 SAMTools SNP 586998 586998 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.06%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C128:46 scaffold1512 SAMTools SNP 587427 587427 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C27%2C0:50 scaffold1512 SAMTools SNP 587547 587547 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1512 SAMTools SNP 587887 587887 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1512 SAMTools SNP 588026 588026 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1512 SAMTools SNP 588065 588065 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1512 SAMTools SNP 588400 588400 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1512 SAMTools SNP 588408 588408 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1512 SAMTools SNP 588445 588445 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1512 SAMTools SNP 588463 588463 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1512 SAMTools SNP 589021 589021 56.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1512 SAMTools SNP 589111 589111 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1512 SAMTools SNP 589120 589120 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1512 SAMTools SNP 589643 589643 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1512 SAMTools SNP 590313 590313 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1512 SAMTools SNP 590390 590390 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.004%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C235:37 scaffold1512 SAMTools SNP 590439 590439 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1512 SAMTools SNP 590597 590597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1512 SAMTools SNP 590681 590681 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1512 SAMTools SNP 590698 590698 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.023%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1512 SAMTools SNP 590998 590998 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1512 SAMTools SNP 591010 591010 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1512 SAMTools SNP 591259 591259 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C30%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C5.2e-06%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C21:24 scaffold1512 SAMTools SNP 591340 591340 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1512 SAMTools SNP 591392 591392 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.26%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1512 SAMTools SNP 592157 592157 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1512 SAMTools SNP 592314 592314 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C184:99 scaffold1512 SAMTools SNP 592317 592317 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C183:99 scaffold1512 SAMTools SNP 594390 594390 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1512 SAMTools SNP 594625 594625 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold1512 SAMTools SNP 594634 594634 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.45%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C226:48 scaffold1512 SAMTools SNP 594663 594663 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C0.0012%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1512 SAMTools SNP 594694 594694 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.6%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1512 SAMTools SNP 594852 594852 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1514 SAMTools SNP 9138 9138 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C140%3BMQ%3D23%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1514 SAMTools SNP 11696 11696 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C13%2C10%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.24%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1514 SAMTools SNP 16377 16377 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D21%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C54%2C0:99 scaffold1514 SAMTools SNP 16701 16701 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C96%2C5%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1514 SAMTools SNP 27471 27471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C80%2C98%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-15%2C1%2C0.24%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1514 SAMTools SNP 27741 27741 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1514 SAMTools SNP 28870 28870 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1514 SAMTools SNP 34570 34570 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1514 SAMTools SNP 37246 37246 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1514 SAMTools SNP 39926 39926 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1514 SAMTools SNP 42092 42092 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1514 SAMTools SNP 42098 42098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1514 SAMTools SNP 42483 42483 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1514 SAMTools SNP 42544 42544 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1514 SAMTools SNP 42579 42579 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1514 SAMTools SNP 42612 42612 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1514 SAMTools SNP 44566 44566 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold1514 SAMTools SNP 44582 44582 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1514 SAMTools SNP 48455 48455 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1514 SAMTools SNP 48478 48478 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1514 SAMTools SNP 48516 48516 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1514 SAMTools SNP 49016 49016 95.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C21%2C0:39 scaffold1514 SAMTools SNP 50137 50137 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C137:69 scaffold1514 SAMTools SNP 50139 50139 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C137:69 scaffold1514 SAMTools SNP 50152 50152 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1514 SAMTools SNP 50298 50298 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C48%2C0:93 scaffold1514 SAMTools SNP 50516 50516 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D42%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C14:17 scaffold1514 SAMTools SNP 50579 50579 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D43%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1514 SAMTools SNP 55154 55154 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1515 SAMTools SNP 12630 12630 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 12632 12632 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 18602 18602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 20064 20064 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.57%3BPV4%3D1%2C2.6e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C23:27 scaffold1515 SAMTools SNP 37746 37746 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 37831 37831 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1515 SAMTools SNP 37953 37953 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.061%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1515 SAMTools SNP 38693 38693 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 39443 39443 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 39800 39800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 39861 39861 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 39910 39910 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1515 SAMTools SNP 40232 40232 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 40308 40308 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 40381 40381 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1515 SAMTools SNP 40897 40897 28.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1515 SAMTools SNP 41439 41439 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1515 SAMTools SNP 41441 41441 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1515 SAMTools SNP 41876 41876 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1515 SAMTools SNP 43034 43034 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 43052 43052 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 43096 43096 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1515 SAMTools SNP 55324 55324 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1515 SAMTools SNP 55714 55714 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C189:46 scaffold1518 SAMTools SNP 1368 1368 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C5%3BMQ%3D48%3BFQ%3D24%3BPV4%3D0.58%2C2.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C237:54 scaffold1518 SAMTools SNP 56932 56932 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1518 SAMTools SNP 57432 57432 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1518 SAMTools SNP 57469 57469 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1518 SAMTools SNP 57585 57585 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1518 SAMTools SNP 58439 58439 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.4%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1518 SAMTools SNP 58511 58511 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C78:81 scaffold1518 SAMTools SNP 60177 60177 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 60230 60230 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 60253 60253 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C38:41 scaffold1518 SAMTools SNP 62293 62293 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1518 SAMTools SNP 62411 62411 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1518 SAMTools SNP 62412 62412 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1518 SAMTools SNP 65729 65729 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 69892 69892 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1518 SAMTools SNP 78531 78531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 79310 79310 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1518 SAMTools SNP 79377 79377 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1518 SAMTools SNP 80468 80468 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1518 SAMTools SNP 80492 80492 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1518 SAMTools SNP 80523 80523 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1518 SAMTools SNP 80588 80588 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 82047 82047 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 101723 101723 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1518 SAMTools SNP 102370 102370 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.27%2C0.0019%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1518 SAMTools SNP 102396 102396 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0040%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C4.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1518 SAMTools SNP 102445 102445 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 102894 102894 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C25%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1518 SAMTools SNP 105619 105619 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C3%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.46%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 105652 105652 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.11%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1518 SAMTools SNP 105686 105686 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1518 SAMTools SNP 105724 105724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1518 SAMTools SNP 108395 108395 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1518 SAMTools SNP 108436 108436 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D47%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C86:89 scaffold1518 SAMTools SNP 108735 108735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1518 SAMTools SNP 109365 109365 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1518 SAMTools SNP 110078 110078 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C4%3BMQ%3D48%3BFQ%3D36%3BPV4%3D1%2C1%2C0.00014%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1518 SAMTools SNP 110121 110121 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1518 SAMTools SNP 110135 110135 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.65%2C0.013%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1518 SAMTools SNP 110187 110187 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1518 SAMTools SNP 110746 110746 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1518 SAMTools SNP 110773 110773 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1518 SAMTools SNP 111283 111283 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C39%2C0:75 scaffold1518 SAMTools SNP 111388 111388 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C23%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1518 SAMTools SNP 111804 111804 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.2%2C7.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C238:78 scaffold1518 SAMTools SNP 112139 112139 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C85%2C1%2C64%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.64%2C9.8e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1518 SAMTools SNP 112209 112209 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C30%2C0:57 scaffold1518 SAMTools SNP 112318 112318 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.076%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold1518 SAMTools SNP 112330 112330 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C157:84 scaffold1518 SAMTools SNP 113398 113398 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1518 SAMTools SNP 113408 113408 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1518 SAMTools SNP 114190 114190 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.1%2C4.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C254:46 scaffold1518 SAMTools SNP 114814 114814 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1518 SAMTools SNP 114836 114836 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 114965 114965 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C33:36 scaffold1518 SAMTools SNP 115003 115003 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1518 SAMTools SNP 115234 115234 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.052%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C245:99 scaffold1518 SAMTools SNP 115317 115317 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C239:99 scaffold1518 SAMTools SNP 115332 115332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1518 SAMTools SNP 115340 115340 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1518 SAMTools SNP 115735 115735 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.014%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1518 SAMTools SNP 116010 116010 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1518 SAMTools SNP 116062 116062 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 117485 117485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.62%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1518 SAMTools SNP 117531 117531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1518 SAMTools SNP 118925 118925 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1518 SAMTools SNP 120302 120302 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1518 SAMTools SNP 120556 120556 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.59%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold1518 SAMTools SNP 121501 121501 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C36%2C0:69 scaffold1518 SAMTools SNP 121530 121530 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C39%2C0:74 scaffold1518 SAMTools SNP 126039 126039 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C3.6e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C223:34 scaffold1518 SAMTools SNP 126285 126285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1518 SAMTools SNP 126924 126924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold1518 SAMTools SNP 130908 130908 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1518 SAMTools SNP 131729 131729 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 131785 131785 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1518 SAMTools SNP 145625 145625 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.17%2C0.074%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1518 SAMTools SNP 146355 146355 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C206:99 scaffold1518 SAMTools SNP 146379 146379 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1518 SAMTools SNP 146668 146668 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 147178 147178 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 147835 147835 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 147967 147967 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold1518 SAMTools SNP 148028 148028 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold1518 SAMTools SNP 149416 149416 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1518 SAMTools SNP 149422 149422 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1518 SAMTools SNP 150310 150310 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1518 SAMTools SNP 150369 150369 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C151:85 scaffold1518 SAMTools SNP 151971 151971 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 152059 152059 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1518 SAMTools SNP 152127 152127 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C7e-17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1518 SAMTools SNP 152247 152247 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C45%2C0:87 scaffold1518 SAMTools SNP 152452 152452 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold1518 SAMTools SNP 153117 153117 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1518 SAMTools SNP 153138 153138 134 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C230:99 scaffold1518 SAMTools SNP 153182 153182 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C6.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C159:98 scaffold1518 SAMTools SNP 154366 154366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 154416 154416 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 155001 155001 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C12%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.24%2C0.00087%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1518 SAMTools SNP 155010 155010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C14%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1518 SAMTools SNP 156401 156401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 156713 156713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C56%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1518 SAMTools SNP 156747 156747 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C40%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 159092 159092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C5%2C64%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 159119 159119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C26%2C75%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 160430 160430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C56%2C42%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 160891 160891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 167128 167128 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1518 SAMTools SNP 168815 168815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C35%2C54%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.046%2C0.23%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 168893 168893 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C71%2C10%2C42%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 169564 169564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C64%2C9%2C40%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 170108 170108 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C17%2C38%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 171222 171222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 171225 171225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C27%2C33%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 171853 171853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C29%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 172950 172950 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C58%2C59%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 173016 173016 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C43%2C27%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 173412 173412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C64%2C35%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.013%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 173436 173436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C84%2C111%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 176771 176771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 176835 176835 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1518 SAMTools SNP 181308 181308 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D514%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C399%2C84%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.29%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 181323 181323 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C17%2C170%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 182274 182274 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C205%2C15%2C22%3BMQ%3D50%3BFQ%3D51%3BPV4%3D2.3e-08%2C1.4e-09%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1518 SAMTools SNP 201124 201124 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1518 SAMTools SNP 201266 201266 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.17%2C6.6e-09%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C102:77 scaffold1518 SAMTools SNP 201905 201905 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1518 SAMTools SNP 202307 202307 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1518 SAMTools SNP 202417 202417 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C10%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D3.3e-06%2C2.1e-12%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1518 SAMTools SNP 202526 202526 29.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1518 SAMTools SNP 206051 206051 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1518 SAMTools SNP 206157 206157 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C24%2C0:45 scaffold1518 SAMTools SNP 206194 206194 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C57%2C0:99 scaffold1518 SAMTools SNP 206395 206395 36.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1518 SAMTools SNP 206564 206564 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.12%2C2.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C206:99 scaffold1518 SAMTools SNP 206948 206948 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1518 SAMTools SNP 207000 207000 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1518 SAMTools SNP 207092 207092 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1518 SAMTools SNP 207230 207230 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1518 SAMTools SNP 207260 207260 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 207275 207275 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1518 SAMTools SNP 207298 207298 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1518 SAMTools SNP 210424 210424 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1518 SAMTools SNP 210433 210433 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1518 SAMTools SNP 216113 216113 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 258068 258068 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 258305 258305 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 295734 295734 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1518 SAMTools SNP 301581 301581 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C104%2C55%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C4.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 301587 301587 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C145%2C44%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C4.7e-12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 301629 301629 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 301653 301653 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C37%2C70%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 302072 302072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C40%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 302078 302078 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C43%2C9%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.011%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1518 SAMTools SNP 305494 305494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 305516 305516 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C299%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 310541 310541 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.015%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C219:99 scaffold1518 SAMTools SNP 312557 312557 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 314463 314463 32.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1518 SAMTools SNP 320612 320612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 325795 325795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C9%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1518 SAMTools SNP 325807 325807 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1518 SAMTools SNP 325824 325824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C10%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.069%2C0.027%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1518 SAMTools SNP 327701 327701 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1518 SAMTools SNP 327712 327712 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1518 SAMTools SNP 327717 327717 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C42%2C0:81 scaffold1518 SAMTools SNP 328791 328791 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 330653 330653 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 331636 331636 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C14%2C51%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 332751 332751 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 334594 334594 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 336188 336188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1518 SAMTools SNP 336219 336219 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C22%3BMQ%3D50%3BFQ%3D-98%3BPV4%3D0.42%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C71%2C0:99 scaffold1518 SAMTools SNP 336251 336251 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1518 SAMTools SNP 340243 340243 133 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C86%2C74%2C164%2C0%2C158:21 scaffold1518 SAMTools SNP 340267 340267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1518 SAMTools SNP 340288 340288 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1518 SAMTools SNP 340321 340321 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1518 SAMTools SNP 342322 342322 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.049%2C0.008%2C1%2C9.5e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1518 SAMTools SNP 342844 342844 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1518 SAMTools SNP 342937 342937 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C8.5e-22%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C232:84 scaffold1518 SAMTools SNP 342997 342997 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.45%2C5.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1518 SAMTools SNP 343214 343214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1518 SAMTools SNP 343663 343663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C41%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1518 SAMTools SNP 343961 343961 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C42%2C0:81 scaffold1518 SAMTools SNP 344059 344059 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1518 SAMTools SNP 345007 345007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C38%2C23%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C9.2e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 345154 345154 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.45%2C5.9e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1518 SAMTools SNP 345194 345194 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C24%2C29%2C16%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C9.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1518 SAMTools SNP 345383 345383 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C45%2C0:87 scaffold1518 SAMTools SNP 345810 345810 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.061%2C1.3e-17%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C240:64 scaffold1518 SAMTools SNP 346102 346102 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1518 SAMTools SNP 346468 346468 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C48%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C166%2C0:99 scaffold1518 SAMTools SNP 346691 346691 47.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1518 SAMTools SNP 346801 346801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C1%2C99%3BMQ%3D50%3BFQ%3D-151%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C124%2C0:99 scaffold1518 SAMTools SNP 347274 347274 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.43%2C0.00041%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C121:92 scaffold1518 SAMTools SNP 348998 348998 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1518 SAMTools SNP 352714 352714 51.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1518 SAMTools SNP 361993 361993 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1518 SAMTools SNP 365836 365836 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1518 SAMTools SNP 380997 380997 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1518 SAMTools SNP 383949 383949 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1518 SAMTools SNP 383958 383958 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1518 SAMTools SNP 383997 383997 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold1518 SAMTools SNP 400569 400569 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 401224 401224 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1518 SAMTools SNP 401341 401341 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C63%2C0:99 scaffold1518 SAMTools SNP 401585 401585 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1518 SAMTools SNP 410419 410419 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1518 SAMTools SNP 410452 410452 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0034%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1518 SAMTools SNP 415931 415931 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1518 SAMTools SNP 416064 416064 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1518 SAMTools SNP 417023 417023 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1518 SAMTools SNP 452315 452315 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1518 SAMTools SNP 452362 452362 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1518 SAMTools SNP 454147 454147 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold1518 SAMTools SNP 454432 454432 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1518 SAMTools SNP 454456 454456 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1518 SAMTools SNP 454484 454484 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.061%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C172:99 scaffold1518 SAMTools SNP 455801 455801 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.11%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C137:42 scaffold1518 SAMTools SNP 455808 455808 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1518 SAMTools SNP 455811 455811 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1518 SAMTools SNP 457198 457198 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 458795 458795 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C29:32 scaffold1518 SAMTools SNP 458804 458804 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1518 SAMTools SNP 458929 458929 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1518 SAMTools SNP 460562 460562 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1518 SAMTools SNP 460604 460604 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1518 SAMTools SNP 460631 460631 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.014%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1518 SAMTools SNP 461540 461540 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1518 SAMTools SNP 465032 465032 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1518 SAMTools SNP 465058 465058 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1518 SAMTools SNP 465377 465377 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold1518 SAMTools SNP 474610 474610 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C24%2C0:45 scaffold1518 SAMTools SNP 475076 475076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1518 SAMTools SNP 475182 475182 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 475190 475190 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 476170 476170 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 477792 477792 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 477804 477804 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 477831 477831 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1518 SAMTools SNP 478815 478815 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C8%3BMQ%3D33%3BFQ%3D-27%3BPV4%3D1%2C1%2C0.13%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C0:3 scaffold1518 SAMTools SNP 478887 478887 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C8%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.24%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1518 SAMTools SNP 481134 481134 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C4%2C8%2C1%3BMQ%3D48%3BFQ%3D93%3BPV4%3D0.55%2C0.028%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1518 SAMTools SNP 481819 481819 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C30%2C3%2C8%3BMQ%3D49%3BFQ%3D128%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1518 SAMTools SNP 482971 482971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 483109 483109 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1518 SAMTools SNP 483136 483136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1518 SAMTools SNP 483409 483409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1518 SAMTools SNP 485570 485570 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1518 SAMTools SNP 485579 485579 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.15%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1518 SAMTools SNP 489731 489731 113 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold1518 SAMTools SNP 490835 490835 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1518 SAMTools SNP 490865 490865 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C241:99 scaffold1518 SAMTools SNP 490928 490928 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-05%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C189:33 scaffold1518 SAMTools SNP 491999 491999 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C125:31 scaffold1518 SAMTools SNP 492752 492752 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold1518 SAMTools SNP 492793 492793 69.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1518 SAMTools SNP 492832 492832 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1518 SAMTools SNP 492859 492859 64.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold1518 SAMTools SNP 493258 493258 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1518 SAMTools SNP 493442 493442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1518 SAMTools SNP 493481 493481 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1518 SAMTools SNP 493550 493550 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold1518 SAMTools SNP 493553 493553 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold1518 SAMTools SNP 493868 493868 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1518 SAMTools SNP 493885 493885 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1518 SAMTools SNP 493943 493943 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C150:99 scaffold1518 SAMTools SNP 494232 494232 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1518 SAMTools SNP 516812 516812 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C36%2C0:69 scaffold1518 SAMTools SNP 517381 517381 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.088%2C7.9e-22%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1518 SAMTools SNP 517495 517495 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.0054%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold1518 SAMTools SNP 517576 517576 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1518 SAMTools SNP 517974 517974 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.34%2C3.2e-13%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1518 SAMTools SNP 518468 518468 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.37%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C119:43 scaffold1518 SAMTools SNP 519068 519068 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold1518 SAMTools SNP 519242 519242 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1519 SAMTools SNP 2048 2048 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1519 SAMTools SNP 30592 30592 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold152 SAMTools SNP 1624 1624 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold152 SAMTools SNP 48576 48576 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold152 SAMTools SNP 59363 59363 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold152 SAMTools SNP 60276 60276 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.29%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold152 SAMTools SNP 61230 61230 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold152 SAMTools SNP 61345 61345 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C30%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0038%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C196:70 scaffold152 SAMTools SNP 62250 62250 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C12%3BMQ%3D47%3BFQ%3D88%3BPV4%3D5.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C115:99 scaffold152 SAMTools SNP 62277 62277 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C4%3BMQ%3D41%3BFQ%3D74%3BPV4%3D0.0082%2C0.3%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C222:99 scaffold152 SAMTools SNP 62388 62388 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D20%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C57%2C0:99 scaffold152 SAMTools SNP 63086 63086 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0128%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold152 SAMTools SNP 63127 63127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold152 SAMTools SNP 63590 63590 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold152 SAMTools SNP 63624 63624 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold152 SAMTools SNP 63792 63792 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold152 SAMTools SNP 63803 63803 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold152 SAMTools SNP 63837 63837 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold152 SAMTools SNP 63936 63936 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold152 SAMTools SNP 64489 64489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold152 SAMTools SNP 64507 64507 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold152 SAMTools SNP 64525 64525 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold152 SAMTools SNP 66030 66030 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold152 SAMTools SNP 66320 66320 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C157:34 scaffold152 SAMTools SNP 67146 67146 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C93:51 scaffold152 SAMTools SNP 67157 67157 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold152 SAMTools SNP 67214 67214 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold152 SAMTools SNP 67224 67224 172 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C41%2C11%2C186%2C0%2C183:57 scaffold152 SAMTools SNP 67689 67689 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold152 SAMTools SNP 67743 67743 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold152 SAMTools SNP 81091 81091 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D44%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C51%2C0:68 scaffold152 SAMTools SNP 117605 117605 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold152 SAMTools SNP 119414 119414 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold152 SAMTools SNP 119436 119436 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.096%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold152 SAMTools SNP 119463 119463 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold152 SAMTools SNP 123238 123238 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold152 SAMTools SNP 125702 125702 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.37%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold152 SAMTools SNP 125740 125740 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C31:34 scaffold152 SAMTools SNP 127052 127052 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.087%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C31:34 scaffold152 SAMTools SNP 127375 127375 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold152 SAMTools SNP 138632 138632 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold152 SAMTools SNP 144080 144080 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C6.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold152 SAMTools SNP 144299 144299 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold152 SAMTools SNP 145865 145865 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C232:64 scaffold152 SAMTools SNP 145866 145866 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.056%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold152 SAMTools SNP 288491 288491 17.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D43%3BFQ%3D-42%3BPV4%3D0.25%2C7.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold152 SAMTools SNP 338064 338064 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold152 SAMTools SNP 348958 348958 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold152 SAMTools SNP 348986 348986 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold152 SAMTools SNP 355387 355387 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold152 SAMTools SNP 359806 359806 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold152 SAMTools SNP 404315 404315 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1521 SAMTools SNP 371 371 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 5021 5021 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1521 SAMTools SNP 12120 12120 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C39%2C0:75 scaffold1521 SAMTools SNP 18161 18161 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 18872 18872 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C18%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1521 SAMTools SNP 20709 20709 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1521 SAMTools SNP 23502 23502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1521 SAMTools SNP 23616 23616 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1521 SAMTools SNP 24342 24342 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.28%2C5.7e-14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1521 SAMTools SNP 24981 24981 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.68%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1521 SAMTools SNP 25998 25998 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C243:65 scaffold1521 SAMTools SNP 26402 26402 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1521 SAMTools SNP 31152 31152 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1521 SAMTools SNP 70463 70463 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 77843 77843 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1521 SAMTools SNP 79166 79166 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1521 SAMTools SNP 82043 82043 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1521 SAMTools SNP 82148 82148 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C4%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.39%2C8.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1521 SAMTools SNP 88800 88800 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1521 SAMTools SNP 88825 88825 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1521 SAMTools SNP 88845 88845 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1521 SAMTools SNP 89822 89822 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1521 SAMTools SNP 89828 89828 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C132:99 scaffold1521 SAMTools SNP 90161 90161 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.15%2C0.0078%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1521 SAMTools SNP 141351 141351 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1521 SAMTools SNP 156890 156890 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1521 SAMTools SNP 157941 157941 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1521 SAMTools SNP 158563 158563 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1521 SAMTools SNP 158610 158610 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C144:99 scaffold1521 SAMTools SNP 158964 158964 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1521 SAMTools SNP 174224 174224 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1521 SAMTools SNP 174234 174234 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1521 SAMTools SNP 177920 177920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 180309 180309 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1521 SAMTools SNP 192193 192193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1521 SAMTools SNP 204587 204587 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1521 SAMTools SNP 205730 205730 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1521 SAMTools SNP 206360 206360 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1521 SAMTools SNP 222852 222852 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 222896 222896 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1521 SAMTools SNP 223154 223154 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.4%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1521 SAMTools SNP 224533 224533 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 230534 230534 3.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1521 SAMTools SNP 233432 233432 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 246726 246726 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1521 SAMTools SNP 246798 246798 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold1521 SAMTools SNP 247831 247831 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C7.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C88:54 scaffold1521 SAMTools SNP 262656 262656 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1521 SAMTools SNP 267932 267932 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.63%2C4.4e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1521 SAMTools SNP 267936 267936 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1521 SAMTools SNP 269331 269331 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold1521 SAMTools SNP 282299 282299 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D956%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1521 SAMTools SNP 282446 282446 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1521 SAMTools SNP 282458 282458 16.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1521 SAMTools SNP 282551 282551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1521 SAMTools SNP 282581 282581 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C57%2C0:99 scaffold1521 SAMTools SNP 283359 283359 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1521 SAMTools SNP 283413 283413 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1521 SAMTools SNP 283437 283437 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold1521 SAMTools SNP 283631 283631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1521 SAMTools SNP 284039 284039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1521 SAMTools SNP 284782 284782 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C18%2C0:33 scaffold1521 SAMTools SNP 287946 287946 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1521 SAMTools SNP 288207 288207 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C42%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C181%2C0:99 scaffold1521 SAMTools SNP 288375 288375 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0015%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1521 SAMTools SNP 288566 288566 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C9%2C18%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C7.5e-09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1521 SAMTools SNP 288577 288577 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.56%2C4.4e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1521 SAMTools SNP 288580 288580 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D34%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.8e-05%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1521 SAMTools SNP 288650 288650 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1521 SAMTools SNP 288933 288933 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C26%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1521 SAMTools SNP 288976 288976 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1521 SAMTools SNP 289120 289120 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1521 SAMTools SNP 289826 289826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1521 SAMTools SNP 290041 290041 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1521 SAMTools SNP 291747 291747 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.12%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C243:99 scaffold1521 SAMTools SNP 299440 299440 21.3 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C47%2C32%2C47%2C0%2C44:26 scaffold1521 SAMTools SNP 299496 299496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 301766 301766 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C72%2C0:99 scaffold1521 SAMTools SNP 301800 301800 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C36%2C0:69 scaffold1521 SAMTools SNP 301805 301805 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1521 SAMTools SNP 305806 305806 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1521 SAMTools SNP 315606 315606 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C220:47 scaffold1521 SAMTools SNP 316408 316408 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C60%2C0:99 scaffold1521 SAMTools SNP 316817 316817 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1521 SAMTools SNP 316846 316846 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1521 SAMTools SNP 317209 317209 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1521 SAMTools SNP 317230 317230 65.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C12%2C0:21 scaffold1521 SAMTools SNP 327819 327819 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1521 SAMTools SNP 366038 366038 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1521 SAMTools SNP 367059 367059 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1521 SAMTools SNP 367086 367086 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1521 SAMTools SNP 367495 367495 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 369406 369406 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 369419 369419 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 372935 372935 69.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold1521 SAMTools SNP 373312 373312 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold1521 SAMTools SNP 374090 374090 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 375098 375098 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1521 SAMTools SNP 376867 376867 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 376909 376909 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 384814 384814 34.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1521 SAMTools SNP 384859 384859 37.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1521 SAMTools SNP 385340 385340 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C200:40 scaffold1521 SAMTools SNP 402616 402616 14.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1521 SAMTools SNP 403337 403337 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C8%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.00016%2C1.3e-33%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C239:88 scaffold1521 SAMTools SNP 404440 404440 18 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1521 SAMTools SNP 404499 404499 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0079%2C0.00019%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C156:58 scaffold1521 SAMTools SNP 404505 404505 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0027%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C224:58 scaffold1521 SAMTools SNP 405689 405689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1521 SAMTools SNP 405847 405847 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C11:14 scaffold1521 SAMTools SNP 414328 414328 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C9%2C1%3BMQ%3D45%3BFQ%3D23%3BPV4%3D1%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C212:53 scaffold1521 SAMTools SNP 417845 417845 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1521 SAMTools SNP 418488 418488 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.036%2C0.11%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1521 SAMTools SNP 418495 418495 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1521 SAMTools SNP 418496 418496 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C209:99 scaffold1521 SAMTools SNP 418508 418508 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C196:99 scaffold1521 SAMTools SNP 418959 418959 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1521 SAMTools SNP 418971 418971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1521 SAMTools SNP 418980 418980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1521 SAMTools SNP 419807 419807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1521 SAMTools SNP 419808 419808 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1521 SAMTools SNP 420186 420186 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1521 SAMTools SNP 424326 424326 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1521 SAMTools SNP 424366 424366 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1521 SAMTools SNP 424793 424793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1521 SAMTools SNP 424801 424801 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.012%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1521 SAMTools SNP 425873 425873 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C172:99 scaffold1521 SAMTools SNP 425874 425874 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1521 SAMTools SNP 425883 425883 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 425969 425969 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 427812 427812 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1521 SAMTools SNP 427815 427815 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1521 SAMTools SNP 428991 428991 26.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1521 SAMTools SNP 436171 436171 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold1521 SAMTools SNP 436398 436398 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C60%2C0:99 scaffold1521 SAMTools SNP 438828 438828 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C49%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C220%2C0:99 scaffold1521 SAMTools SNP 439133 439133 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1521 SAMTools SNP 439314 439314 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1521 SAMTools SNP 439451 439451 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1521 SAMTools SNP 439713 439713 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C9%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C163%2C0:99 scaffold1521 SAMTools SNP 439896 439896 41.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1521 SAMTools SNP 441522 441522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1521 SAMTools SNP 441537 441537 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1521 SAMTools SNP 441728 441728 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1521 SAMTools SNP 441738 441738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1521 SAMTools SNP 443275 443275 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1521 SAMTools SNP 444207 444207 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1521 SAMTools SNP 444998 444998 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.69%2C5.8e-06%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1521 SAMTools SNP 445019 445019 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C4%2C3%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.18%2C0.038%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1521 SAMTools SNP 446281 446281 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1521 SAMTools SNP 446530 446530 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold1521 SAMTools SNP 466568 466568 4.12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D1%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C57%2C0:39 scaffold1521 SAMTools SNP 467732 467732 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1521 SAMTools SNP 468421 468421 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 468423 468423 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1521 SAMTools SNP 470210 470210 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C17%3BMQ%3D45%3BFQ%3D-12.3%3BPV4%3D1%2C0.28%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C15:18 scaffold1521 SAMTools SNP 472339 472339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1521 SAMTools SNP 472550 472550 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C88:47 scaffold1521 SAMTools SNP 517556 517556 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1521 SAMTools SNP 517637 517637 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1521 SAMTools SNP 520263 520263 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1521 SAMTools SNP 520311 520311 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1522 SAMTools SNP 7453 7453 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1522 SAMTools SNP 7489 7489 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1522 SAMTools SNP 7908 7908 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold1522 SAMTools SNP 76523 76523 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1522 SAMTools SNP 76537 76537 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1522 SAMTools SNP 77753 77753 54.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1522 SAMTools SNP 80487 80487 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.9e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold1522 SAMTools SNP 81003 81003 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1522 SAMTools SNP 84939 84939 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6.1e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1522 SAMTools SNP 86270 86270 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold1522 SAMTools SNP 88463 88463 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C2e-12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C239:99 scaffold1522 SAMTools SNP 96640 96640 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C26%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C4.3e-32%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C227:72 scaffold1522 SAMTools SNP 97807 97807 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.27%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1522 SAMTools SNP 100771 100771 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1522 SAMTools SNP 102555 102555 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1522 SAMTools SNP 102721 102721 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1522 SAMTools SNP 121293 121293 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1522 SAMTools SNP 122573 122573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1522 SAMTools SNP 123182 123182 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1522 SAMTools SNP 123205 123205 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1522 SAMTools SNP 123546 123546 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C32:35 scaffold1522 SAMTools SNP 123674 123674 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.11%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1522 SAMTools SNP 123913 123913 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1522 SAMTools SNP 123971 123971 80.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold1524 SAMTools SNP 13407 13407 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1524 SAMTools SNP 13493 13493 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.12%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1524 SAMTools SNP 14757 14757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C9.2e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1524 SAMTools SNP 14835 14835 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1524 SAMTools SNP 17059 17059 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.28%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1524 SAMTools SNP 17758 17758 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.34%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1524 SAMTools SNP 17847 17847 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.011%2C0.22%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1524 SAMTools SNP 18250 18250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 20738 20738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1524 SAMTools SNP 20751 20751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C45%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 23665 23665 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1524 SAMTools SNP 24159 24159 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C38:41 scaffold1524 SAMTools SNP 25311 25311 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C86%2C17%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 25398 25398 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 26624 26624 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 28424 28424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C13%2C72%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 28761 28761 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C27%2C70%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 28824 28824 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1524 SAMTools SNP 28953 28953 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.021%2C7.7e-33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1524 SAMTools SNP 29374 29374 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C9%2C69%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1524 SAMTools SNP 29413 29413 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C64%2C85%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 29839 29839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C140%2C22%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 30457 30457 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 30478 30478 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C3%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1524 SAMTools SNP 37848 37848 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1524 SAMTools SNP 37901 37901 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1524 SAMTools SNP 37902 37902 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1524 SAMTools SNP 44097 44097 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold1524 SAMTools SNP 46075 46075 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.061%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold1524 SAMTools SNP 46102 46102 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C173:99 scaffold1524 SAMTools SNP 46170 46170 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1524 SAMTools SNP 47401 47401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 47429 47429 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0011%2C1e-10%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1524 SAMTools SNP 47454 47454 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C2.9e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 48314 48314 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C9%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.75%2C5.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1524 SAMTools SNP 48622 48622 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C7.4e-24%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1524 SAMTools SNP 48731 48731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.9e-39%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 48972 48972 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0023%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1524 SAMTools SNP 50148 50148 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 50413 50413 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 51063 51063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 51087 51087 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.59%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1524 SAMTools SNP 54015 54015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.22%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 54075 54075 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1524 SAMTools SNP 55017 55017 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1524 SAMTools SNP 56187 56187 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1524 SAMTools SNP 57696 57696 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C14%2C0%3BMQ%3D49%3BFQ%3D44%3BPV4%3D0.18%2C3.3e-08%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C215:74 scaffold1524 SAMTools SNP 58808 58808 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1524 SAMTools SNP 65897 65897 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1524 SAMTools SNP 68023 68023 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1524 SAMTools SNP 69383 69383 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1524 SAMTools SNP 69396 69396 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1524 SAMTools SNP 69420 69420 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1524 SAMTools SNP 69428 69428 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.27%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1524 SAMTools SNP 69444 69444 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1524 SAMTools SNP 72068 72068 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1524 SAMTools SNP 77157 77157 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1524 SAMTools SNP 77160 77160 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1524 SAMTools SNP 88125 88125 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1524 SAMTools SNP 88346 88346 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1524 SAMTools SNP 89507 89507 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1524 SAMTools SNP 108218 108218 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.00016%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold1524 SAMTools SNP 108258 108258 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C33%2C0:63 scaffold1524 SAMTools SNP 126637 126637 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C91%2C25%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 127451 127451 6.95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1524 SAMTools SNP 127768 127768 26.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1524 SAMTools SNP 128148 128148 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C90%2C10%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C4.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 128284 128284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 128761 128761 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D972%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1524 SAMTools SNP 129190 129190 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C110%2C1%2C31%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.68%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1524 SAMTools SNP 129773 129773 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1524 SAMTools SNP 129862 129862 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold1524 SAMTools SNP 138196 138196 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1524 SAMTools SNP 138683 138683 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1524 SAMTools SNP 140387 140387 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1524 SAMTools SNP 141249 141249 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C26%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1524 SAMTools SNP 141393 141393 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2.8e-13%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1524 SAMTools SNP 156972 156972 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C33%2C0:63 scaffold1525 SAMTools SNP 72640 72640 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold1525 SAMTools SNP 73194 73194 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C2%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.66%2C0.15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1525 SAMTools SNP 73206 73206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.13%2C1%2C0.25%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1525 SAMTools SNP 73761 73761 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1525 SAMTools SNP 78429 78429 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1525 SAMTools SNP 78439 78439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D762%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C760%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1525 SAMTools SNP 80524 80524 186 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D31%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C78%2C0:99 scaffold1525 SAMTools SNP 80887 80887 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C31%2C104%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D2.6e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1525 SAMTools SNP 81708 81708 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C6%3BMQ%3D40%3BFQ%3D94%3BPV4%3D0.56%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1525 SAMTools SNP 95365 95365 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 96387 96387 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 96422 96422 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 97870 97870 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C20%2C148%2C29%3BMQ%3D47%3BFQ%3D-282%3BPV4%3D8.6e-11%2C0.44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1525 SAMTools SNP 97894 97894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C38%2C182%2C151%3BMQ%3D47%3BFQ%3D-272%3BPV4%3D2.4e-11%2C0.46%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C245%2C0:99 scaffold1525 SAMTools SNP 107128 107128 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 107184 107184 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 107376 107376 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 107433 107433 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 149746 149746 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 150001 150001 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1525 SAMTools SNP 168963 168963 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.51%2C3.3e-47%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1525 SAMTools SNP 169044 169044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C11%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1525 SAMTools SNP 169247 169247 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1525 SAMTools SNP 169346 169346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C18%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.8%2C0.065%2C0.071%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1525 SAMTools SNP 170119 170119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C11%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold1525 SAMTools SNP 173476 173476 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.46%2C0.089%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold1525 SAMTools SNP 178268 178268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D47%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1525 SAMTools SNP 178500 178500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C25%3BMQ%3D47%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1525 SAMTools SNP 178547 178547 91.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold1525 SAMTools SNP 180231 180231 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C0%2C11%3BMQ%3D43%3BFQ%3D72%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1525 SAMTools SNP 180260 180260 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C41%3BMQ%3D42%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1525 SAMTools SNP 180369 180369 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C21%2C0:39 scaffold1525 SAMTools SNP 184130 184130 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C13%3BMQ%3D47%3BFQ%3D105%3BPV4%3D1%2C1%2C0.2%2C8.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C132:99 scaffold1525 SAMTools SNP 186975 186975 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C36%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C2.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C64%2C0:99 scaffold1525 SAMTools SNP 187183 187183 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold1525 SAMTools SNP 191286 191286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1525 SAMTools SNP 191297 191297 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.46%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1525 SAMTools SNP 191345 191345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1525 SAMTools SNP 195022 195022 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1525 SAMTools SNP 195188 195188 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1525 SAMTools SNP 196878 196878 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1525 SAMTools SNP 249600 249600 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1525 SAMTools SNP 272744 272744 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1525 SAMTools SNP 317263 317263 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1525 SAMTools SNP 330713 330713 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 330759 330759 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1525 SAMTools SNP 369073 369073 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1525 SAMTools SNP 369765 369765 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1526 SAMTools SNP 30211 30211 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C207:60 scaffold1526 SAMTools SNP 30305 30305 52.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold1526 SAMTools SNP 30306 30306 52.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold1526 SAMTools SNP 35814 35814 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 35851 35851 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 43537 43537 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 44127 44127 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1526 SAMTools SNP 44890 44890 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1526 SAMTools SNP 44924 44924 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1526 SAMTools SNP 45486 45486 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 45520 45520 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1526 SAMTools SNP 45567 45567 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1526 SAMTools SNP 50007 50007 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C4.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C98:99 scaffold1526 SAMTools SNP 50269 50269 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1526 SAMTools SNP 50278 50278 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1526 SAMTools SNP 51163 51163 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1526 SAMTools SNP 51193 51193 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1526 SAMTools SNP 52598 52598 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C21%2C77%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 61895 61895 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1526 SAMTools SNP 61913 61913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1526 SAMTools SNP 62278 62278 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1526 SAMTools SNP 62288 62288 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1526 SAMTools SNP 62762 62762 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 62798 62798 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1526 SAMTools SNP 62810 62810 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.18%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1526 SAMTools SNP 63091 63091 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C63%2C0:99 scaffold1526 SAMTools SNP 63145 63145 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C5.3e-05%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 65040 65040 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.18%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1526 SAMTools SNP 65944 65944 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.29%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 65977 65977 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C0%2C23%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1526 SAMTools SNP 67046 67046 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 67171 67171 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1526 SAMTools SNP 67734 67734 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1526 SAMTools SNP 67744 67744 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold1526 SAMTools SNP 68518 68518 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1526 SAMTools SNP 75587 75587 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1526 SAMTools SNP 75596 75596 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1526 SAMTools SNP 75765 75765 193 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold1526 SAMTools SNP 75780 75780 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C23:26 scaffold1526 SAMTools SNP 75813 75813 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C63:66 scaffold1526 SAMTools SNP 75831 75831 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1526 SAMTools SNP 75840 75840 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1526 SAMTools SNP 76063 76063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1526 SAMTools SNP 76791 76791 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.65%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1526 SAMTools SNP 76920 76920 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1526 SAMTools SNP 76941 76941 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1526 SAMTools SNP 76947 76947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C21%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1526 SAMTools SNP 77655 77655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-07%2C0.0027%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 77670 77670 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C22%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1526 SAMTools SNP 78024 78024 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1526 SAMTools SNP 78042 78042 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.46%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1526 SAMTools SNP 78063 78063 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.46%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1526 SAMTools SNP 78587 78587 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold1526 SAMTools SNP 81439 81439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1526 SAMTools SNP 81484 81484 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1526 SAMTools SNP 82070 82070 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.5%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C193:99 scaffold1526 SAMTools SNP 90806 90806 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1526 SAMTools SNP 91185 91185 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1526 SAMTools SNP 91213 91213 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1526 SAMTools SNP 91603 91603 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1526 SAMTools SNP 92388 92388 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1526 SAMTools SNP 92413 92413 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1526 SAMTools SNP 94984 94984 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C43%2C6%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.046%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1526 SAMTools SNP 95146 95146 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.29%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C181:99 scaffold1526 SAMTools SNP 95431 95431 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C2%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1526 SAMTools SNP 96814 96814 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 97068 97068 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1526 SAMTools SNP 98760 98760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D46%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1526 SAMTools SNP 114139 114139 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold1526 SAMTools SNP 118782 118782 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1526 SAMTools SNP 119261 119261 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C202:71 scaffold1526 SAMTools SNP 119284 119284 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1526 SAMTools SNP 119302 119302 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1526 SAMTools SNP 119594 119594 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 119630 119630 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1526 SAMTools SNP 120211 120211 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1526 SAMTools SNP 120212 120212 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1526 SAMTools SNP 120983 120983 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1527 SAMTools SNP 16249 16249 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1527 SAMTools SNP 31767 31767 39.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1527 SAMTools SNP 42611 42611 69.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold1527 SAMTools SNP 44246 44246 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1527 SAMTools SNP 46161 46161 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1527 SAMTools SNP 55845 55845 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1527 SAMTools SNP 55919 55919 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1527 SAMTools SNP 100573 100573 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 100608 100608 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1527 SAMTools SNP 103828 103828 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.021%2C0.0035%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1527 SAMTools SNP 110196 110196 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.011%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold1527 SAMTools SNP 200054 200054 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1527 SAMTools SNP 200075 200075 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1527 SAMTools SNP 200349 200349 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1527 SAMTools SNP 200385 200385 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C54%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1527 SAMTools SNP 200400 200400 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C53%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1527 SAMTools SNP 201036 201036 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C141%2C0:99 scaffold1527 SAMTools SNP 201117 201117 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C42%2C0:76 scaffold1527 SAMTools SNP 201210 201210 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1527 SAMTools SNP 201354 201354 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1527 SAMTools SNP 201615 201615 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.035%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1527 SAMTools SNP 201625 201625 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C219:34 scaffold1527 SAMTools SNP 203912 203912 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C255%2C0:99 scaffold1527 SAMTools SNP 206942 206942 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1527 SAMTools SNP 207126 207126 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1527 SAMTools SNP 217330 217330 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C21%2C0:39 scaffold1527 SAMTools SNP 217336 217336 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C18%2C0:33 scaffold1527 SAMTools SNP 217849 217849 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1527 SAMTools SNP 217863 217863 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1527 SAMTools SNP 218828 218828 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1527 SAMTools SNP 224006 224006 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 224022 224022 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 248650 248650 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.38%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1527 SAMTools SNP 248669 248669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1527 SAMTools SNP 248677 248677 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.28%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1527 SAMTools SNP 250267 250267 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 251893 251893 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1527 SAMTools SNP 253789 253789 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1527 SAMTools SNP 253791 253791 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.16%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1527 SAMTools SNP 256504 256504 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C87%2C3%2C30%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.022%2C0.5%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1527 SAMTools SNP 256519 256519 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D40%2C30%2C3%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1527 SAMTools SNP 258789 258789 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold1527 SAMTools SNP 258795 258795 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1527 SAMTools SNP 260445 260445 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1527 SAMTools SNP 260453 260453 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1527 SAMTools SNP 260534 260534 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C240:99 scaffold1527 SAMTools SNP 260538 260538 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.13%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C240:99 scaffold1527 SAMTools SNP 261623 261623 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C75%2C0:99 scaffold1527 SAMTools SNP 262241 262241 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1527 SAMTools SNP 275581 275581 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1527 SAMTools SNP 275935 275935 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1527 SAMTools SNP 276839 276839 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1527 SAMTools SNP 277039 277039 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 278464 278464 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 280244 280244 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1527 SAMTools SNP 295518 295518 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1527 SAMTools SNP 295520 295520 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1527 SAMTools SNP 295526 295526 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1528 SAMTools SNP 24221 24221 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1528 SAMTools SNP 24298 24298 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1528 SAMTools SNP 34598 34598 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1528 SAMTools SNP 34611 34611 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C197:99 scaffold1528 SAMTools SNP 37703 37703 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1528 SAMTools SNP 37720 37720 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C210:69 scaffold1528 SAMTools SNP 37999 37999 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1528 SAMTools SNP 39244 39244 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1528 SAMTools SNP 46548 46548 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C254%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 47834 47834 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C443%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 47849 47849 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D533%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C259%2C30%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C5.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 47866 47866 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C181%2C42%2C239%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 47915 47915 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1528 SAMTools SNP 48410 48410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1528 SAMTools SNP 48425 48425 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C0%2C69%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.3%2C1.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1528 SAMTools SNP 48626 48626 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1528 SAMTools SNP 48627 48627 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1528 SAMTools SNP 49074 49074 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.074%2C7.4e-17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C31%2C0:48 scaffold1528 SAMTools SNP 49240 49240 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C75%2C0:99 scaffold1528 SAMTools SNP 50169 50169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 50199 50199 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C249:99 scaffold1528 SAMTools SNP 50268 50268 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.039%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C169:99 scaffold1528 SAMTools SNP 50348 50348 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1528 SAMTools SNP 51125 51125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1528 SAMTools SNP 51188 51188 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1528 SAMTools SNP 51621 51621 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1528 SAMTools SNP 51661 51661 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1528 SAMTools SNP 52189 52189 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1528 SAMTools SNP 52216 52216 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C115:99 scaffold1528 SAMTools SNP 53557 53557 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 53574 53574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.0035%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 53964 53964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 53995 53995 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C21%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 54703 54703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 54712 54712 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C6%2C45%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.091%2C1%2C1%2C8.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1528 SAMTools SNP 54738 54738 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C16%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1528 SAMTools SNP 114791 114791 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0019%2C5.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1528 SAMTools SNP 115196 115196 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 120675 120675 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.28%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1528 SAMTools SNP 120684 120684 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C4%2C16%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1528 SAMTools SNP 125233 125233 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1528 SAMTools SNP 125301 125301 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1528 SAMTools SNP 126403 126403 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1528 SAMTools SNP 128472 128472 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C15%2C16%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.016%2C2.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1528 SAMTools SNP 160958 160958 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.075%2C0.0022%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C230:62 scaffold1528 SAMTools SNP 161805 161805 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1528 SAMTools SNP 161951 161951 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1528 SAMTools SNP 171054 171054 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.27%2C0.28%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1528 SAMTools SNP 171486 171486 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1528 SAMTools SNP 171835 171835 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.23%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C186:99 scaffold1528 SAMTools SNP 171885 171885 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1528 SAMTools SNP 172450 172450 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1528 SAMTools SNP 172574 172574 48 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.36%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C197:81 scaffold1528 SAMTools SNP 173004 173004 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1528 SAMTools SNP 173102 173102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1528 SAMTools SNP 174897 174897 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1528 SAMTools SNP 175085 175085 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1528 SAMTools SNP 182278 182278 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1528 SAMTools SNP 183355 183355 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C36%2C0:69 scaffold1528 SAMTools SNP 191328 191328 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C1%2C80%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 191370 191370 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C295%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 193332 193332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 194486 194486 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C69%2C0%2C109%3BMQ%3D50%3BFQ%3D207%3BPV4%3D2.5e-29%2C3.2e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1528 SAMTools SNP 194800 194800 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D581%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C107%2C121%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 195011 195011 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C275%2C2%2C94%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1528 SAMTools SNP 195029 195029 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C222%2C1%2C73%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1528 SAMTools SNP 195122 195122 47.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1528 SAMTools SNP 195164 195164 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C65%2C6%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0044%2C0.033%2C1%2C1.4e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1528 SAMTools SNP 195427 195427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C67%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.0041%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 195457 195457 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.018%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 195502 195502 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C4%2C30%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.66%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1528 SAMTools SNP 195508 195508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C6%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 195865 195865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 196133 196133 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D653%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D263%2C0%2C367%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1528 SAMTools SNP 197062 197062 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1528 SAMTools SNP 197098 197098 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.36%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1528 SAMTools SNP 200298 200298 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1528 SAMTools SNP 200307 200307 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1528 SAMTools SNP 200334 200334 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1528 SAMTools SNP 200722 200722 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1528 SAMTools SNP 200735 200735 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C59:99 scaffold1528 SAMTools SNP 201186 201186 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C10%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1528 SAMTools SNP 201294 201294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C35%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1528 SAMTools SNP 201743 201743 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 201785 201785 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C48%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 201827 201827 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C74%2C6%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 202175 202175 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C6%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 202255 202255 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.55%2C0.076%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1528 SAMTools SNP 202265 202265 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C235:99 scaffold1528 SAMTools SNP 202597 202597 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 202642 202642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.00031%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 202732 202732 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.00093%2C4.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1528 SAMTools SNP 202795 202795 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1528 SAMTools SNP 203046 203046 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1528 SAMTools SNP 206532 206532 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C29:32 scaffold1528 SAMTools SNP 206544 206544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1528 SAMTools SNP 207016 207016 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 207951 207951 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 208509 208509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1528 SAMTools SNP 208578 208578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C16%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 208650 208650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 208671 208671 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 209041 209041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 209432 209432 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C19%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 209534 209534 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C82%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 209537 209537 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C86%2C14%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 209858 209858 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 210934 210934 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C15%2C142%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.1e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 211069 211069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C156%2C13%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 211838 211838 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 212201 212201 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C51%2C29%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 212717 212717 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C21%2C79%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 238251 238251 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1528 SAMTools SNP 238694 238694 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1528 SAMTools SNP 239226 239226 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1528 SAMTools SNP 240440 240440 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1528 SAMTools SNP 252334 252334 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1528 SAMTools SNP 257752 257752 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C54%2C5%2C39%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.21%2C3e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1528 SAMTools SNP 258178 258178 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 258722 258722 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.45%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1528 SAMTools SNP 258794 258794 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C247:57 scaffold1528 SAMTools SNP 258848 258848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1528 SAMTools SNP 260660 260660 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.026%2C0.00032%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1528 SAMTools SNP 261938 261938 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C21%2C0:39 scaffold1528 SAMTools SNP 261956 261956 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1528 SAMTools SNP 268066 268066 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1528 SAMTools SNP 270575 270575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1528 SAMTools SNP 271826 271826 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C24%2C0:45 scaffold1528 SAMTools SNP 272318 272318 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C20%2C16%3BMQ%3D32%3BFQ%3D157%3BPV4%3D0.069%2C1%2C0.0057%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1528 SAMTools SNP 273604 273604 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0396%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D5%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C19:22 scaffold1528 SAMTools SNP 273619 273619 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C22%2C28%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 273679 273679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C27%2C113%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 274912 274912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1528 SAMTools SNP 274917 274917 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.039%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1528 SAMTools SNP 274942 274942 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1528 SAMTools SNP 274951 274951 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1528 SAMTools SNP 275164 275164 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C235:99 scaffold1528 SAMTools SNP 275166 275166 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C31%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C142:99 scaffold1528 SAMTools SNP 275185 275185 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C27%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C118:99 scaffold1528 SAMTools SNP 276306 276306 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1528 SAMTools SNP 276310 276310 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1528 SAMTools SNP 276517 276517 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C0%3BMQ%3D45%3BFQ%3D181%3BPV4%3D0.26%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1528 SAMTools SNP 276526 276526 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D43%3BFQ%3D120%3BPV4%3D1%2C1%2C0.45%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C168:99 scaffold1528 SAMTools SNP 276542 276542 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C45%2C0:87 scaffold1528 SAMTools SNP 277150 277150 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C11%3BMQ%3D47%3BFQ%3D144%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold1528 SAMTools SNP 277654 277654 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1528 SAMTools SNP 277696 277696 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C7%2C3%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1528 SAMTools SNP 277724 277724 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C29%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 277939 277939 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C53%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-10%2C2.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 277955 277955 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C46%2C12%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1528 SAMTools SNP 279630 279630 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C13%3BMQ%3D39%3BFQ%3D87%3BPV4%3D0.016%2C1%2C0.0012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1528 SAMTools SNP 279982 279982 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1528 SAMTools SNP 280482 280482 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C16%3BMQ%3D41%3BFQ%3D174%3BPV4%3D6.8e-05%2C0.35%2C0.001%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1528 SAMTools SNP 280651 280651 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C15%2C2%3BMQ%3D32%3BFQ%3D121%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1528 SAMTools SNP 280687 280687 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C28%2C5%3BMQ%3D36%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 281826 281826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C35%3BMQ%3D30%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1528 SAMTools SNP 282211 282211 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C6%2C6%3BMQ%3D34%3BFQ%3D94%3BPV4%3D1%2C0.35%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C212:99 scaffold1528 SAMTools SNP 282215 282215 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C6%2C2%3BMQ%3D34%3BFQ%3D95%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C190:99 scaffold1528 SAMTools SNP 282257 282257 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C16%2C5%3BMQ%3D42%3BFQ%3D219%3BPV4%3D0.079%2C7.7e-05%2C0.47%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1528 SAMTools SNP 283247 283247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C16%2C57%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.67%2C9.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 283381 283381 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C66%2C7%2C34%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1528 SAMTools SNP 284288 284288 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C10%3BMQ%3D42%3BFQ%3D104%3BPV4%3D0.52%2C1%2C0.044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1528 SAMTools SNP 284777 284777 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1528 SAMTools SNP 284798 284798 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1528 SAMTools SNP 305426 305426 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1528 SAMTools SNP 305451 305451 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1528 SAMTools SNP 305497 305497 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1528 SAMTools SNP 306117 306117 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C17%2C84%3BMQ%3D48%3BFQ%3D-118%3BPV4%3D0.22%2C0.25%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold1528 SAMTools SNP 306142 306142 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D44%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C147:99 scaffold1528 SAMTools SNP 309039 309039 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C2%3BMQ%3D46%3BFQ%3D35%3BPV4%3D0.066%2C1%2C0.0063%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C218:65 scaffold1528 SAMTools SNP 309049 309049 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1528 SAMTools SNP 310795 310795 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1528 SAMTools SNP 310938 310938 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1528 SAMTools SNP 312316 312316 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1528 SAMTools SNP 312988 312988 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D30%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C33%2C0:63 scaffold1528 SAMTools SNP 313038 313038 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C6%3BMQ%3D45%3BFQ%3D84%3BPV4%3D0.0022%2C0.26%2C0.093%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C152:99 scaffold1528 SAMTools SNP 313501 313501 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1528 SAMTools SNP 313528 313528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1528 SAMTools SNP 313543 313543 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1528 SAMTools SNP 313559 313559 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C105:99 scaffold1528 SAMTools SNP 314036 314036 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C11%3BMQ%3D35%3BFQ%3D98%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C232:99 scaffold1528 SAMTools SNP 314040 314040 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C11%3BMQ%3D35%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C240:99 scaffold1528 SAMTools SNP 314082 314082 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D37%3BFQ%3D75%3BPV4%3D1%2C0.37%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1528 SAMTools SNP 314156 314156 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1528 SAMTools SNP 314945 314945 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D45%3BFQ%3D21%3BPV4%3D0.52%2C0.47%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1528 SAMTools SNP 315762 315762 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold1528 SAMTools SNP 315868 315868 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1528 SAMTools SNP 316260 316260 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1528 SAMTools SNP 316271 316271 21.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1532 SAMTools SNP 138 138 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1532 SAMTools SNP 952 952 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1532 SAMTools SNP 985 985 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1532 SAMTools SNP 1217 1217 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold1532 SAMTools SNP 1934 1934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1532 SAMTools SNP 1961 1961 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1532 SAMTools SNP 3303 3303 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1532 SAMTools SNP 6971 6971 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C78%2C0:99 scaffold1532 SAMTools SNP 7093 7093 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1532 SAMTools SNP 11792 11792 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1532 SAMTools SNP 11801 11801 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1532 SAMTools SNP 11849 11849 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1532 SAMTools SNP 12636 12636 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1532 SAMTools SNP 12709 12709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 13405 13405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1532 SAMTools SNP 13464 13464 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.64%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1532 SAMTools SNP 14318 14318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1532 SAMTools SNP 14760 14760 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1532 SAMTools SNP 15636 15636 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 15734 15734 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1532 SAMTools SNP 16174 16174 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1532 SAMTools SNP 16219 16219 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1532 SAMTools SNP 16738 16738 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1532 SAMTools SNP 16768 16768 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1532 SAMTools SNP 16770 16770 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1532 SAMTools SNP 16814 16814 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 17028 17028 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1532 SAMTools SNP 17360 17360 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 17876 17876 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C108%2C0:99 scaffold1532 SAMTools SNP 17884 17884 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1532 SAMTools SNP 17931 17931 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1532 SAMTools SNP 17947 17947 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C11%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1532 SAMTools SNP 18332 18332 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1532 SAMTools SNP 18368 18368 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold1532 SAMTools SNP 20257 20257 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1532 SAMTools SNP 20290 20290 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1532 SAMTools SNP 20294 20294 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.046%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1532 SAMTools SNP 20314 20314 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.14%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1532 SAMTools SNP 20776 20776 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.52%2C0.29%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1532 SAMTools SNP 20833 20833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1532 SAMTools SNP 21300 21300 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1532 SAMTools SNP 21425 21425 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1532 SAMTools SNP 41694 41694 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1532 SAMTools SNP 66757 66757 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 68772 68772 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.64%2C0.24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1532 SAMTools SNP 68850 68850 17.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1532 SAMTools SNP 68865 68865 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.29%2C8e-07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C161:99 scaffold1532 SAMTools SNP 68880 68880 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C88:60 scaffold1532 SAMTools SNP 68907 68907 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1532 SAMTools SNP 68913 68913 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1532 SAMTools SNP 74534 74534 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D47%3BFQ%3D45%3BPV4%3D1%2C1%2C0.11%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C158:75 scaffold1532 SAMTools SNP 74669 74669 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 80920 80920 85.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1532 SAMTools SNP 81040 81040 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 83090 83090 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C230:99 scaffold1532 SAMTools SNP 86216 86216 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 86414 86414 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C195:99 scaffold1532 SAMTools SNP 86486 86486 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1532 SAMTools SNP 86877 86877 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1532 SAMTools SNP 86906 86906 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 86921 86921 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 86942 86942 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1532 SAMTools SNP 87128 87128 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1532 SAMTools SNP 87334 87334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1532 SAMTools SNP 87352 87352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1532 SAMTools SNP 87805 87805 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 88812 88812 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 88842 88842 83.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold1532 SAMTools SNP 88968 88968 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold1532 SAMTools SNP 89483 89483 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold1532 SAMTools SNP 89486 89486 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold1532 SAMTools SNP 89519 89519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1532 SAMTools SNP 89534 89534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1532 SAMTools SNP 90991 90991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 91129 91129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.00095%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 91420 91420 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1532 SAMTools SNP 94244 94244 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1532 SAMTools SNP 97812 97812 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1532 SAMTools SNP 97851 97851 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1532 SAMTools SNP 97986 97986 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.062%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1532 SAMTools SNP 99105 99105 176 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C46%2C216%2C0%2C210:51 scaffold1532 SAMTools SNP 99109 99109 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C24%2C0:45 scaffold1532 SAMTools SNP 100146 100146 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C245:53 scaffold1532 SAMTools SNP 100149 100149 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C245:55 scaffold1532 SAMTools SNP 100422 100422 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.18%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1532 SAMTools SNP 100446 100446 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 101592 101592 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1.1e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C164:99 scaffold1532 SAMTools SNP 102178 102178 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1532 SAMTools SNP 107354 107354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1532 SAMTools SNP 107846 107846 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D56.8%3BPV4%3D1%2C0.33%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C85:87 scaffold1532 SAMTools SNP 107867 107867 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.077%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C91:42 scaffold1532 SAMTools SNP 107948 107948 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1532 SAMTools SNP 109900 109900 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1532 SAMTools SNP 110803 110803 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold1532 SAMTools SNP 111365 111365 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1532 SAMTools SNP 111603 111603 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 111700 111700 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 113550 113550 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C18%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C96:99 scaffold1532 SAMTools SNP 113567 113567 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1532 SAMTools SNP 115771 115771 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1532 SAMTools SNP 115811 115811 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 116059 116059 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1532 SAMTools SNP 116065 116065 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1532 SAMTools SNP 142639 142639 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1532 SAMTools SNP 185647 185647 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 190746 190746 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 190756 190756 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1532 SAMTools SNP 190782 190782 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C12%2C0%3BMQ%3D47%3BFQ%3D61%3BPV4%3D1%2C0.41%2C8.9e-10%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C238:91 scaffold1532 SAMTools SNP 191789 191789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C4%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 191803 191803 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C4%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 191833 191833 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C3%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.072%2C0.026%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1532 SAMTools SNP 191871 191871 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1532 SAMTools SNP 194179 194179 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C0.11%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1532 SAMTools SNP 194209 194209 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1532 SAMTools SNP 194241 194241 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1532 SAMTools SNP 194515 194515 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 194527 194527 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 218016 218016 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1532 SAMTools SNP 233589 233589 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 233592 233592 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 273867 273867 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 273869 273869 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.014%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1532 SAMTools SNP 274184 274184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C46%2C17%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.67%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1532 SAMTools SNP 282194 282194 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1532 SAMTools SNP 283831 283831 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 283873 283873 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1532 SAMTools SNP 284271 284271 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 284398 284398 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1532 SAMTools SNP 284591 284591 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1532 SAMTools SNP 284681 284681 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 284735 284735 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1532 SAMTools SNP 284910 284910 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 285630 285630 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1532 SAMTools SNP 303175 303175 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1532 SAMTools SNP 333455 333455 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 333599 333599 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 333641 333641 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1532 SAMTools SNP 336115 336115 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1532 SAMTools SNP 339537 339537 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C245:46 scaffold1532 SAMTools SNP 340087 340087 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.4%2C0.012%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C158:42 scaffold1532 SAMTools SNP 340478 340478 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1532 SAMTools SNP 340543 340543 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1532 SAMTools SNP 340935 340935 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.35%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1532 SAMTools SNP 341261 341261 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.073%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1532 SAMTools SNP 341384 341384 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.38%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1532 SAMTools SNP 341942 341942 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold1532 SAMTools SNP 342050 342050 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.049%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1532 SAMTools SNP 342104 342104 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1532 SAMTools SNP 342640 342640 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C0.26%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1532 SAMTools SNP 343017 343017 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1532 SAMTools SNP 343196 343196 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 343598 343598 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1532 SAMTools SNP 343685 343685 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1532 SAMTools SNP 345053 345053 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 345278 345278 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C134:85 scaffold1532 SAMTools SNP 345303 345303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1532 SAMTools SNP 345310 345310 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1532 SAMTools SNP 345673 345673 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1532 SAMTools SNP 345716 345716 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 346150 346150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 346459 346459 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C169:99 scaffold1532 SAMTools SNP 346601 346601 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold1532 SAMTools SNP 348981 348981 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 349044 349044 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1532 SAMTools SNP 349065 349065 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1532 SAMTools SNP 349259 349259 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 349703 349703 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C166:36 scaffold1532 SAMTools SNP 349757 349757 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1532 SAMTools SNP 349766 349766 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1532 SAMTools SNP 352821 352821 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 352923 352923 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1532 SAMTools SNP 357860 357860 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1532 SAMTools SNP 359641 359641 24.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1532 SAMTools SNP 360975 360975 6.98 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C26%2C23%2C36%2C0%2C33:4 scaffold1532 SAMTools SNP 427087 427087 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D30%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C218:31 scaffold1532 SAMTools SNP 427327 427327 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C235%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 428577 428577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C7%2C29%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 446074 446074 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 446076 446076 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 446087 446087 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1532 SAMTools SNP 448726 448726 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold1532 SAMTools SNP 448885 448885 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1532 SAMTools SNP 465065 465065 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C243:99 scaffold1532 SAMTools SNP 465086 465086 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C211:99 scaffold1532 SAMTools SNP 465093 465093 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.2%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C250:99 scaffold1532 SAMTools SNP 470675 470675 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1532 SAMTools SNP 470729 470729 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C39%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.018%2C1.2e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1532 SAMTools SNP 471213 471213 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C12%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.057%2C2.5e-25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1532 SAMTools SNP 471708 471708 46.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1532 SAMTools SNP 497197 497197 22 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1532 SAMTools SNP 497198 497198 20 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1532 SAMTools SNP 543123 543123 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1532 SAMTools SNP 544825 544825 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C54%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1532 SAMTools SNP 545491 545491 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 545647 545647 90 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1532 SAMTools SNP 545701 545701 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1532 SAMTools SNP 545938 545938 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1532 SAMTools SNP 545983 545983 211 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C81%2C0%2C226%2C38%2C220:99 scaffold1532 SAMTools SNP 545993 545993 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C33%2C0:63 scaffold1532 SAMTools SNP 546145 546145 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C78%2C0:99 scaffold1532 SAMTools SNP 546214 546214 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 546249 546249 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C0.36%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold1532 SAMTools SNP 547931 547931 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C14%2C7%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C9.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1532 SAMTools SNP 547958 547958 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1532 SAMTools SNP 548225 548225 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1532 SAMTools SNP 548294 548294 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C212:42 scaffold1532 SAMTools SNP 548314 548314 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1532 SAMTools SNP 548475 548475 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1532 SAMTools SNP 548538 548538 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C234:99 scaffold1532 SAMTools SNP 548750 548750 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 549521 549521 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1532 SAMTools SNP 549524 549524 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1532 SAMTools SNP 554149 554149 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1532 SAMTools SNP 554829 554829 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C13%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.026%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1532 SAMTools SNP 554989 554989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C144%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.47%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 556949 556949 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C0.15%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C202:99 scaffold1532 SAMTools SNP 556961 556961 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C174:99 scaffold1532 SAMTools SNP 557722 557722 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1532 SAMTools SNP 557726 557726 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.26%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1532 SAMTools SNP 565613 565613 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C33%2C0:63 scaffold1532 SAMTools SNP 574967 574967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C17%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1532 SAMTools SNP 574985 574985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 582290 582290 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1532 SAMTools SNP 582587 582587 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C3%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 582602 582602 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 582769 582769 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1532 SAMTools SNP 607128 607128 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 607361 607361 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1532 SAMTools SNP 608929 608929 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1532 SAMTools SNP 609875 609875 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C24%2C0:45 scaffold1532 SAMTools SNP 609892 609892 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0:39 scaffold1532 SAMTools SNP 609925 609925 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 609946 609946 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 610189 610189 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 610405 610405 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.17%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C102:47 scaffold1532 SAMTools SNP 610494 610494 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D45%3BFQ%3D69%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C220:99 scaffold1532 SAMTools SNP 646439 646439 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1532 SAMTools SNP 716781 716781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1532 SAMTools SNP 716814 716814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C10%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1532 SAMTools SNP 717528 717528 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C10%3BMQ%3D50%3BFQ%3D-149;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C133:99 scaffold1532 SAMTools SNP 717992 717992 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C79%2C8%2C22%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.82%2C2.7e-05%2C1%2C6.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1532 SAMTools SNP 720396 720396 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C113%2C73%3BMQ%3D15%3BFQ%3D-282%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold1532 SAMTools SNP 720434 720434 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C127%3BMQ%3D4%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C255%2C0:99 scaffold1532 SAMTools SNP 721662 721662 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C65%3BMQ%3D3%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C205%2C0:84 scaffold1532 SAMTools SNP 722308 722308 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C73%3BMQ%3D3%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C232%2C0:99 scaffold1532 SAMTools SNP 723891 723891 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1532 SAMTools SNP 724838 724838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1532 SAMTools SNP 724889 724889 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C24%2C11%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.00024%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold1532 SAMTools SNP 724904 724904 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1532 SAMTools SNP 725546 725546 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1532 SAMTools SNP 726800 726800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1532 SAMTools SNP 726821 726821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1532 SAMTools SNP 727013 727013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 727019 727019 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1532 SAMTools SNP 727700 727700 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C207:40 scaffold1532 SAMTools SNP 727815 727815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C13%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 727827 727827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C10%2C61%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 728897 728897 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 728989 728989 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C67%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0035%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 730029 730029 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1532 SAMTools SNP 730062 730062 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1532 SAMTools SNP 731957 731957 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1532 SAMTools SNP 733048 733048 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1532 SAMTools SNP 733069 733069 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1532 SAMTools SNP 733656 733656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1532 SAMTools SNP 733695 733695 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 733721 733721 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1532 SAMTools SNP 734587 734587 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1532 SAMTools SNP 734606 734606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1532 SAMTools SNP 735356 735356 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1532 SAMTools SNP 735901 735901 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1532 SAMTools SNP 735902 735902 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1532 SAMTools SNP 735946 735946 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0076%2C0.00092%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1532 SAMTools SNP 735947 735947 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0076%2C7e-06%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1532 SAMTools SNP 736740 736740 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1532 SAMTools SNP 737643 737643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C47%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 737673 737673 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C47%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 754755 754755 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1532 SAMTools SNP 754779 754779 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1532 SAMTools SNP 796676 796676 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 796688 796688 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 796936 796936 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1532 SAMTools SNP 796962 796962 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.43%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1532 SAMTools SNP 801215 801215 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 879554 879554 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1532 SAMTools SNP 887651 887651 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C79%2C82%2C54%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 890642 890642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C71%2C79%2C84%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 892341 892341 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 897489 897489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 897549 897549 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1532 SAMTools SNP 897573 897573 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1532 SAMTools SNP 901232 901232 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1532 SAMTools SNP 901256 901256 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1532 SAMTools SNP 903881 903881 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1532 SAMTools SNP 907672 907672 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D51.6%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C80:82 scaffold1532 SAMTools SNP 908481 908481 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1532 SAMTools SNP 909676 909676 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C10%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1532 SAMTools SNP 909890 909890 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C24%2C0%2C11%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.09%2C3.4e-23%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1532 SAMTools SNP 910290 910290 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1532 SAMTools SNP 980863 980863 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1532 SAMTools SNP 980874 980874 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1532 SAMTools SNP 980923 980923 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1532 SAMTools SNP 983514 983514 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold1532 SAMTools SNP 983585 983585 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C8.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C48:51 scaffold1532 SAMTools SNP 984117 984117 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1532 SAMTools SNP 984226 984226 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 984288 984288 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1532 SAMTools SNP 1069828 1069828 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1532 SAMTools SNP 1121721 1121721 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.7%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C66:69 scaffold1532 SAMTools SNP 1137033 1137033 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1137049 1137049 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1532 SAMTools SNP 1137060 1137060 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 1137084 1137084 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 1138483 1138483 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.48%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1532 SAMTools SNP 1143830 1143830 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C39:41 scaffold1532 SAMTools SNP 1144033 1144033 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1532 SAMTools SNP 1144079 1144079 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1532 SAMTools SNP 1144481 1144481 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1532 SAMTools SNP 1152198 1152198 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1152484 1152484 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1532 SAMTools SNP 1154301 1154301 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1532 SAMTools SNP 1154314 1154314 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1532 SAMTools SNP 1179535 1179535 15.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C1%2C0:4 scaffold1532 SAMTools SNP 1232972 1232972 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 1233861 1233861 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1532 SAMTools SNP 1240287 1240287 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1240681 1240681 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1532 SAMTools SNP 1240819 1240819 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1532 SAMTools SNP 1263955 1263955 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1264786 1264786 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1264816 1264816 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1532 SAMTools SNP 1265876 1265876 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1274382 1274382 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 1274390 1274390 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 1289919 1289919 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1290616 1290616 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.39%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1532 SAMTools SNP 1290940 1290940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C35%2C63%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1291640 1291640 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C20%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-09%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1292280 1292280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C23%2C58%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.55%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1532 SAMTools SNP 1292295 1292295 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C5%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.13%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1532 SAMTools SNP 1294317 1294317 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold1532 SAMTools SNP 1294348 1294348 18 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1532 SAMTools SNP 1294933 1294933 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold1532 SAMTools SNP 1296237 1296237 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1532 SAMTools SNP 1296243 1296243 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1532 SAMTools SNP 1296271 1296271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1532 SAMTools SNP 1296526 1296526 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C0.19%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C232:99 scaffold1532 SAMTools SNP 1296766 1296766 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1532 SAMTools SNP 1296801 1296801 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C12%2C21%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.37%2C2.1e-41%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1532 SAMTools SNP 1296887 1296887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1374%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1532 SAMTools SNP 1297055 1297055 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1418%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C232%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.9e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C255%2C0:99 scaffold1532 SAMTools SNP 1302175 1302175 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C2.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C250:99 scaffold1532 SAMTools SNP 1302250 1302250 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C36%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C9e-12%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1302586 1302586 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C87%2C0:99 scaffold1532 SAMTools SNP 1303000 1303000 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00037%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C198:41 scaffold1532 SAMTools SNP 1303130 1303130 99 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C42%2C0%2C113%2C3%2C107:81 scaffold1532 SAMTools SNP 1303635 1303635 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold1532 SAMTools SNP 1303671 1303671 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C220:99 scaffold1532 SAMTools SNP 1304051 1304051 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C111%2C0:99 scaffold1532 SAMTools SNP 1304132 1304132 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1532 SAMTools SNP 1305152 1305152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1305586 1305586 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1307007 1307007 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1532 SAMTools SNP 1307018 1307018 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1532 SAMTools SNP 1307046 1307046 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold1532 SAMTools SNP 1309392 1309392 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1532 SAMTools SNP 1309400 1309400 23.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C6%3BMQ%3D30%3BFQ%3D-20%3BPV4%3D1%2C0.3%2C0.095%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C7:10 scaffold1532 SAMTools SNP 1315076 1315076 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1321554 1321554 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D32%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C125:51 scaffold1532 SAMTools SNP 1321559 1321559 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C5%3BMQ%3D29%3BFQ%3D40%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C67:70 scaffold1532 SAMTools SNP 1323514 1323514 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1532 SAMTools SNP 1323904 1323904 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1323931 1323931 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1323959 1323959 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.32%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1532 SAMTools SNP 1326532 1326532 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1532 SAMTools SNP 1326548 1326548 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1532 SAMTools SNP 1326589 1326589 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1532 SAMTools SNP 1326610 1326610 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C66:69 scaffold1532 SAMTools SNP 1348789 1348789 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C33%2C0:63 scaffold1532 SAMTools SNP 1356038 1356038 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1532 SAMTools SNP 1356888 1356888 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1358816 1358816 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.52%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1532 SAMTools SNP 1361874 1361874 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold1532 SAMTools SNP 1362784 1362784 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C3%3BMQ%3D47%3BFQ%3D65%3BPV4%3D0.53%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1532 SAMTools SNP 1364020 1364020 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C4.6e-23%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1532 SAMTools SNP 1364074 1364074 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1.7e-07%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1532 SAMTools SNP 1364775 1364775 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1532 SAMTools SNP 1365371 1365371 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1532 SAMTools SNP 1365407 1365407 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1532 SAMTools SNP 1366170 1366170 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.12%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1532 SAMTools SNP 1366697 1366697 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.077%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1532 SAMTools SNP 1366703 1366703 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.012%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1532 SAMTools SNP 1367469 1367469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1532 SAMTools SNP 1367517 1367517 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 1367535 1367535 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1532 SAMTools SNP 1368053 1368053 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1532 SAMTools SNP 1368080 1368080 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1532 SAMTools SNP 1368146 1368146 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1368698 1368698 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1532 SAMTools SNP 1369125 1369125 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1369227 1369227 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 1369233 1369233 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 1369628 1369628 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.08%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1532 SAMTools SNP 1369673 1369673 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1532 SAMTools SNP 1369787 1369787 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1532 SAMTools SNP 1370288 1370288 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1532 SAMTools SNP 1370879 1370879 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.2%2C6.7e-30%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1532 SAMTools SNP 1370951 1370951 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.077%2C5.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1532 SAMTools SNP 1371636 1371636 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1374945 1374945 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1532 SAMTools SNP 1374975 1374975 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1374991 1374991 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1377196 1377196 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C3%2C11%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.032%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C248:41 scaffold1532 SAMTools SNP 1377262 1377262 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1377297 1377297 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1385431 1385431 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1532 SAMTools SNP 1395174 1395174 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1532 SAMTools SNP 1395179 1395179 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.18%2C3.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C172:58 scaffold1532 SAMTools SNP 1396351 1396351 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C208:99 scaffold1532 SAMTools SNP 1401331 1401331 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C3%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1532 SAMTools SNP 1401782 1401782 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C13%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.05%2C1%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1532 SAMTools SNP 1401798 1401798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1532 SAMTools SNP 1402244 1402244 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C35%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1402268 1402268 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C32%2C0%2C32%3BMQ%3D50%3BFQ%3D120%3BPV4%3D7.3e-11%2C8.3e-19%2C1%2C1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1532 SAMTools SNP 1402446 1402446 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1532 SAMTools SNP 1402774 1402774 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0026%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C34:37 scaffold1532 SAMTools SNP 1403148 1403148 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C18%2C0:33 scaffold1532 SAMTools SNP 1403219 1403219 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1532 SAMTools SNP 1403429 1403429 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1532 SAMTools SNP 1403595 1403595 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1532 SAMTools SNP 1403730 1403730 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1404217 1404217 41.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1532 SAMTools SNP 1404852 1404852 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1532 SAMTools SNP 1409117 1409117 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1532 SAMTools SNP 1410974 1410974 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.076%2C7.1e-08%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C219:33 scaffold1532 SAMTools SNP 1411773 1411773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1532 SAMTools SNP 1412576 1412576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1412577 1412577 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1412873 1412873 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1415371 1415371 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1415410 1415410 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1532 SAMTools SNP 1415910 1415910 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1532 SAMTools SNP 1421314 1421314 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.033%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C160:37 scaffold1532 SAMTools SNP 1422442 1422442 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1423470 1423470 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.4e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C229:30 scaffold1532 SAMTools SNP 1423507 1423507 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1532 SAMTools SNP 1423806 1423806 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1e-05%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1532 SAMTools SNP 1423848 1423848 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1532 SAMTools SNP 1429144 1429144 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1532 SAMTools SNP 1429551 1429551 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold1532 SAMTools SNP 1435775 1435775 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 1435838 1435838 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1435877 1435877 54.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1532 SAMTools SNP 1441342 1441342 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D1%2C3.6e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C32:35 scaffold1532 SAMTools SNP 1450827 1450827 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1450838 1450838 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1532 SAMTools SNP 1450980 1450980 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold1532 SAMTools SNP 1455366 1455366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1455790 1455790 46.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1532 SAMTools SNP 1455820 1455820 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1532 SAMTools SNP 1459833 1459833 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1532 SAMTools SNP 1460035 1460035 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1532 SAMTools SNP 1460654 1460654 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C177:56 scaffold1532 SAMTools SNP 1461118 1461118 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1532 SAMTools SNP 1461627 1461627 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1532 SAMTools SNP 1466502 1466502 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.066%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C184:30 scaffold1532 SAMTools SNP 1467532 1467532 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1532 SAMTools SNP 1467559 1467559 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1469845 1469845 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold1532 SAMTools SNP 1469924 1469924 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C90%2C0:99 scaffold1532 SAMTools SNP 1470791 1470791 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1532 SAMTools SNP 1471402 1471402 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1532 SAMTools SNP 1471423 1471423 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 1471441 1471441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1532 SAMTools SNP 1471669 1471669 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C1%2C56%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C3e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1532 SAMTools SNP 1471690 1471690 141 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C255%2C0%2C159%2C255%2C156:99 scaffold1532 SAMTools SNP 1471720 1471720 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C4%2C17%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.19%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1532 SAMTools SNP 1473910 1473910 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 1486608 1486608 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1532 SAMTools SNP 1486653 1486653 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C21%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D3.7e-05%2C0.1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1532 SAMTools SNP 1487121 1487121 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C54%2C16%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1487145 1487145 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C112%2C1%2C60%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.063%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1532 SAMTools SNP 1487150 1487150 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C132%2C0%2C69%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1532 SAMTools SNP 1487532 1487532 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1487995 1487995 115 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C84%2C0:99 scaffold1532 SAMTools SNP 1488046 1488046 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1532 SAMTools SNP 1500782 1500782 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1532 SAMTools SNP 1501106 1501106 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C252:99 scaffold1532 SAMTools SNP 1501878 1501878 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1532 SAMTools SNP 1502771 1502771 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1532 SAMTools SNP 1502819 1502819 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1532 SAMTools SNP 1503795 1503795 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1532 SAMTools SNP 1504016 1504016 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold1532 SAMTools SNP 1506541 1506541 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1506667 1506667 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1509064 1509064 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1509066 1509066 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1529086 1529086 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1532 SAMTools SNP 1552116 1552116 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C10%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.75%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1532 SAMTools SNP 1565479 1565479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1532 SAMTools SNP 1566141 1566141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1532 SAMTools SNP 1566171 1566171 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1567311 1567311 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1532 SAMTools SNP 1580781 1580781 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1532 SAMTools SNP 1581540 1581540 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1532 SAMTools SNP 1592087 1592087 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1592787 1592787 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1532 SAMTools SNP 1595068 1595068 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1532 SAMTools SNP 1596316 1596316 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1532 SAMTools SNP 1610280 1610280 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1611927 1611927 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1532 SAMTools SNP 1611933 1611933 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1532 SAMTools SNP 1612033 1612033 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C62:65 scaffold1532 SAMTools SNP 1612304 1612304 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1532 SAMTools SNP 1612319 1612319 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold1532 SAMTools SNP 1613400 1613400 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1614672 1614672 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1532 SAMTools SNP 1614717 1614717 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1532 SAMTools SNP 1615141 1615141 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1615229 1615229 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1532 SAMTools SNP 1615258 1615258 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1532 SAMTools SNP 1615570 1615570 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1532 SAMTools SNP 1615655 1615655 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1532 SAMTools SNP 1620739 1620739 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1623586 1623586 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1623661 1623661 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1532 SAMTools SNP 1623708 1623708 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1532 SAMTools SNP 1624324 1624324 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1532 SAMTools SNP 1627177 1627177 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C251:53 scaffold1532 SAMTools SNP 1627215 1627215 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1532 SAMTools SNP 1627219 1627219 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.25%2C0.018%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1532 SAMTools SNP 1678486 1678486 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1533 SAMTools SNP 5650 5650 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 5696 5696 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 24109 24109 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.033%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 25660 25660 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C54%2C0:99 scaffold1533 SAMTools SNP 25669 25669 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C5.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C210:83 scaffold1533 SAMTools SNP 25949 25949 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1533 SAMTools SNP 25959 25959 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1533 SAMTools SNP 27617 27617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1533 SAMTools SNP 29011 29011 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1533 SAMTools SNP 29512 29512 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C5%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 29699 29699 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold1533 SAMTools SNP 30064 30064 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C17%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 30940 30940 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1533 SAMTools SNP 31202 31202 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C2%2C31%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.49%2C0.049%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1533 SAMTools SNP 31365 31365 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1533 SAMTools SNP 32380 32380 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1533 SAMTools SNP 32402 32402 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1533 SAMTools SNP 33144 33144 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 33399 33399 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C8%2C10%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1533 SAMTools SNP 34301 34301 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1533 SAMTools SNP 35981 35981 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1533 SAMTools SNP 38432 38432 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1533 SAMTools SNP 39221 39221 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C1%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.051%2C0.0089%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1533 SAMTools SNP 39222 39222 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C1%2C22%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.027%2C0.0063%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1533 SAMTools SNP 39914 39914 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1533 SAMTools SNP 40114 40114 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1533 SAMTools SNP 40123 40123 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1533 SAMTools SNP 40387 40387 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold1533 SAMTools SNP 40389 40389 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1533 SAMTools SNP 48686 48686 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1533 SAMTools SNP 53241 53241 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1533 SAMTools SNP 53463 53463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1533 SAMTools SNP 53469 53469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1533 SAMTools SNP 53526 53526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 53964 53964 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold1533 SAMTools SNP 54090 54090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1533 SAMTools SNP 55043 55043 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C4%2C48%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 55244 55244 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C11%2C17%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.39%2C0.36%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 55906 55906 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C22%2C9%3BMQ%3D34%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 59602 59602 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C138%2C263%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1533 SAMTools SNP 60823 60823 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D3.25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C30:29 scaffold1533 SAMTools SNP 62971 62971 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 64229 64229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 65377 65377 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 65395 65395 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1533 SAMTools SNP 65611 65611 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1533 SAMTools SNP 65975 65975 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold1533 SAMTools SNP 65998 65998 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1533 SAMTools SNP 66021 66021 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 66026 66026 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1533 SAMTools SNP 67054 67054 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1533 SAMTools SNP 67084 67084 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C23:26 scaffold1533 SAMTools SNP 67124 67124 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1533 SAMTools SNP 67350 67350 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1533 SAMTools SNP 67498 67498 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1533 SAMTools SNP 67512 67512 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold1533 SAMTools SNP 67542 67542 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1533 SAMTools SNP 67551 67551 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C0.018%2C1%2C6.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1533 SAMTools SNP 69635 69635 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1533 SAMTools SNP 69662 69662 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1533 SAMTools SNP 74670 74670 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1533 SAMTools SNP 75256 75256 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 76231 76231 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.42%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C185:69 scaffold1533 SAMTools SNP 77013 77013 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1533 SAMTools SNP 92199 92199 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C6%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1533 SAMTools SNP 92242 92242 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C24%2C16%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1533 SAMTools SNP 92290 92290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C27%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 92416 92416 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C19%2C0%2C19%3BMQ%3D50%3BFQ%3D109%3BPV4%3D9.8e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1533 SAMTools SNP 92544 92544 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C69%2C0%2C84%3BMQ%3D50%3BFQ%3D69%3BPV4%3D8.4e-25%2C1.1e-37%2C1%2C2.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1533 SAMTools SNP 98262 98262 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C97%2C92%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 100870 100870 24.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1533 SAMTools SNP 102720 102720 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C255%2C0:99 scaffold1533 SAMTools SNP 104746 104746 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1533 SAMTools SNP 105363 105363 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D153%3BPV4%3D7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1533 SAMTools SNP 108023 108023 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1533 SAMTools SNP 112137 112137 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.023%2C8.2e-13%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1533 SAMTools SNP 118187 118187 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1533 SAMTools SNP 122073 122073 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 133207 133207 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.65%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1533 SAMTools SNP 133405 133405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1533 SAMTools SNP 136335 136335 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C17:20 scaffold1533 SAMTools SNP 137459 137459 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1533 SAMTools SNP 137463 137463 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1533 SAMTools SNP 137535 137535 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1533 SAMTools SNP 138901 138901 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1533 SAMTools SNP 140126 140126 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C3%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.64%2C0.0019%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1533 SAMTools SNP 142214 142214 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C0%2C6%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D0.031%2C4.2e-06%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1533 SAMTools SNP 145157 145157 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C0%2C6%3BMQ%3D48%3BFQ%3D24%3BPV4%3D1%2C1%2C0.2%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1533 SAMTools SNP 156947 156947 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D801%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D309%2C77%2C268%2C58%3BMQ%3D25%3BFQ%3D225%3BPV4%3D0.5%2C1%2C0.42%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 158508 158508 6.98 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1533 SAMTools SNP 160801 160801 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D824%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C638%3BMQ%3D3%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C255%2C0:99 scaffold1533 SAMTools SNP 162181 162181 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D788%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C651%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C255%2C0:99 scaffold1533 SAMTools SNP 162937 162937 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2478%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1700%2C136%2C519%2C82%3BMQ%3D48%3BFQ%3D64%3BPV4%3D7.7e-06%2C1%2C2.8e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1533 SAMTools SNP 162941 162941 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2438%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1681%2C132%2C521%2C83%3BMQ%3D48%3BFQ%3D62%3BPV4%3D4.6e-06%2C0.0029%2C1.2e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1533 SAMTools SNP 163599 163599 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold1533 SAMTools SNP 163781 163781 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C150%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C255%2C0:99 scaffold1533 SAMTools SNP 164343 164343 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1533 SAMTools SNP 164788 164788 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1533 SAMTools SNP 164853 164853 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C58:61 scaffold1533 SAMTools SNP 164857 164857 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C100:40 scaffold1533 SAMTools SNP 164878 164878 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold1533 SAMTools SNP 165169 165169 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1533 SAMTools SNP 165211 165211 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1533 SAMTools SNP 167072 167072 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1533 SAMTools SNP 168143 168143 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.34%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold1533 SAMTools SNP 168171 168171 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1533 SAMTools SNP 169610 169610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1533 SAMTools SNP 169628 169628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 211793 211793 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1533 SAMTools SNP 212398 212398 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1533 SAMTools SNP 212517 212517 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.23%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1533 SAMTools SNP 212545 212545 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C35:38 scaffold1533 SAMTools SNP 229303 229303 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C41:44 scaffold1533 SAMTools SNP 229505 229505 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C5.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1533 SAMTools SNP 229892 229892 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1533 SAMTools SNP 230652 230652 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1533 SAMTools SNP 231325 231325 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1533 SAMTools SNP 250822 250822 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold1533 SAMTools SNP 251389 251389 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1533 SAMTools SNP 251390 251390 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1533 SAMTools SNP 251398 251398 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.28%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1533 SAMTools SNP 251409 251409 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.61%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C216:99 scaffold1533 SAMTools SNP 251411 251411 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D148%3BPV4%3D5.2e-05%2C0.00012%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C175:99 scaffold1533 SAMTools SNP 253474 253474 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C33%2C0:63 scaffold1533 SAMTools SNP 257494 257494 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1533 SAMTools SNP 258783 258783 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C4%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C199%2C0:99 scaffold1533 SAMTools SNP 264758 264758 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.13%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1533 SAMTools SNP 264777 264777 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C107:99 scaffold1533 SAMTools SNP 264884 264884 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1533 SAMTools SNP 265252 265252 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C70:73 scaffold1533 SAMTools SNP 265259 265259 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C197:73 scaffold1533 SAMTools SNP 265316 265316 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1533 SAMTools SNP 292322 292322 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1533 SAMTools SNP 301140 301140 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.001%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C110:52 scaffold1533 SAMTools SNP 301167 301167 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1533 SAMTools SNP 309370 309370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1533 SAMTools SNP 309442 309442 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1533 SAMTools SNP 309443 309443 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1533 SAMTools SNP 309702 309702 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 309738 309738 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1533 SAMTools SNP 310208 310208 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1533 SAMTools SNP 310415 310415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 310591 310591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 310717 310717 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1533 SAMTools SNP 311498 311498 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1533 SAMTools SNP 311988 311988 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1533 SAMTools SNP 312539 312539 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold1533 SAMTools SNP 313261 313261 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C26:29 scaffold1533 SAMTools SNP 313552 313552 14.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1533 SAMTools SNP 316850 316850 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1533 SAMTools SNP 316924 316924 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1533 SAMTools SNP 317709 317709 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold1533 SAMTools SNP 317792 317792 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1533 SAMTools SNP 317859 317859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1533 SAMTools SNP 318054 318054 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1533 SAMTools SNP 321660 321660 92.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1533 SAMTools SNP 322815 322815 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C21%2C0%3BMQ%3D44%3BFQ%3D-72%3BPV4%3D0.004%2C0.16%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1533 SAMTools SNP 323108 323108 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D39%3BFQ%3D5.47%3BPV4%3D0.17%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C192:30 scaffold1533 SAMTools SNP 328362 328362 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 328500 328500 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1533 SAMTools SNP 329145 329145 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1533 SAMTools SNP 329680 329680 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1533 SAMTools SNP 329686 329686 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1533 SAMTools SNP 329696 329696 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 333191 333191 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1533 SAMTools SNP 333678 333678 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1533 SAMTools SNP 334197 334197 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1533 SAMTools SNP 334269 334269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1533 SAMTools SNP 335171 335171 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1533 SAMTools SNP 335578 335578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1535 SAMTools SNP 40628 40628 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C4.6e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C129:68 scaffold1536 SAMTools SNP 29798 29798 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.52%2C1.1e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C116:80 scaffold1536 SAMTools SNP 29816 29816 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.005%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C206:99 scaffold1536 SAMTools SNP 68650 68650 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 68672 68672 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 76062 76062 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1536 SAMTools SNP 81216 81216 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 81858 81858 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 86881 86881 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 86896 86896 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 87406 87406 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1536 SAMTools SNP 87421 87421 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1536 SAMTools SNP 87448 87448 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1536 SAMTools SNP 91130 91130 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1536 SAMTools SNP 91154 91154 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 91528 91528 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 91535 91535 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1536 SAMTools SNP 92122 92122 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1536 SAMTools SNP 92346 92346 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.5%2C0.0039%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C214:62 scaffold1536 SAMTools SNP 94398 94398 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 94401 94401 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 96312 96312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1536 SAMTools SNP 96333 96333 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1536 SAMTools SNP 96367 96367 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1536 SAMTools SNP 96898 96898 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1538 SAMTools SNP 10222 10222 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1538 SAMTools SNP 37393 37393 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1538 SAMTools SNP 37432 37432 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1538 SAMTools SNP 37945 37945 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1538 SAMTools SNP 37962 37962 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1538 SAMTools SNP 38867 38867 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1538 SAMTools SNP 39941 39941 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1538 SAMTools SNP 41092 41092 76.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C15%2C0:27 scaffold154 SAMTools SNP 1635 1635 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold154 SAMTools SNP 1693 1693 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold154 SAMTools SNP 2047 2047 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.36%2C9e-19%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C167:51 scaffold154 SAMTools SNP 16583 16583 24.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold154 SAMTools SNP 17258 17258 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C154%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C255%2C0:99 scaffold154 SAMTools SNP 24166 24166 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold154 SAMTools SNP 25014 25014 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C37%2C6%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 25417 25417 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.03%2C0.31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold154 SAMTools SNP 29359 29359 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C33%2C0:63 scaffold154 SAMTools SNP 30136 30136 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C45%2C0:87 scaffold154 SAMTools SNP 30248 30248 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold154 SAMTools SNP 30296 30296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold154 SAMTools SNP 30463 30463 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C4%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold154 SAMTools SNP 30527 30527 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold154 SAMTools SNP 30965 30965 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C6%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold154 SAMTools SNP 31041 31041 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold154 SAMTools SNP 31042 31042 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold154 SAMTools SNP 31307 31307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C2%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold154 SAMTools SNP 31370 31370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold154 SAMTools SNP 31421 31421 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C17%2C88%3BMQ%3D50%3BFQ%3D-166%3BPV4%3D0.14%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C139%2C0:99 scaffold154 SAMTools SNP 37944 37944 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold154 SAMTools SNP 42636 42636 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C142:43 scaffold154 SAMTools SNP 45892 45892 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold154 SAMTools SNP 48921 48921 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold154 SAMTools SNP 48929 48929 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C40%2C4%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.24%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold154 SAMTools SNP 48968 48968 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.56%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold154 SAMTools SNP 49313 49313 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.64%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold154 SAMTools SNP 53374 53374 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C13%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold154 SAMTools SNP 53459 53459 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold154 SAMTools SNP 55753 55753 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C18%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C3.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C247:68 scaffold154 SAMTools SNP 60182 60182 13.2 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D23%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0%2C47%2C0%2C35:5 scaffold154 SAMTools SNP 60676 60676 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D24%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C51%2C0:99 scaffold154 SAMTools SNP 61776 61776 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold154 SAMTools SNP 62121 62121 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold154 SAMTools SNP 62497 62497 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold154 SAMTools SNP 62566 62566 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold154 SAMTools SNP 63573 63573 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold154 SAMTools SNP 66286 66286 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.00068%2C1%2C5.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C238:76 scaffold154 SAMTools SNP 69672 69672 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold154 SAMTools SNP 72128 72128 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.48%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold154 SAMTools SNP 78151 78151 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.01%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C166:99 scaffold154 SAMTools SNP 78733 78733 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.69%2C2.2e-06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold154 SAMTools SNP 78761 78761 84.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold154 SAMTools SNP 79534 79534 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold154 SAMTools SNP 79705 79705 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold154 SAMTools SNP 79821 79821 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C58:61 scaffold154 SAMTools SNP 80321 80321 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C54%2C1%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-14%2C1%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 80322 80322 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C91%2C45%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-14%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 80350 80350 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold154 SAMTools SNP 80428 80428 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C44%2C70%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-10%2C0.053%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 80682 80682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C43%2C81%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-09%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 80755 80755 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C74%2C30%2C33%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.2%2C5.1e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold154 SAMTools SNP 80779 80779 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C82%2C41%2C40%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.02%2C2.2e-153%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold154 SAMTools SNP 80872 80872 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C42%2C40%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D5.2e-07%2C1%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold154 SAMTools SNP 80923 80923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C33%2C57%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 82364 82364 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold154 SAMTools SNP 82369 82369 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold154 SAMTools SNP 83140 83140 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold154 SAMTools SNP 83152 83152 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold154 SAMTools SNP 83328 83328 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C230:58 scaffold154 SAMTools SNP 83335 83335 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold154 SAMTools SNP 83497 83497 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C69%2C0:99 scaffold154 SAMTools SNP 83533 83533 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C48%2C0:93 scaffold154 SAMTools SNP 84973 84973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold154 SAMTools SNP 84977 84977 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold154 SAMTools SNP 85206 85206 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C20%2C19%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.49%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C30%2C0:57 scaffold154 SAMTools SNP 85403 85403 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C18%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.068%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold154 SAMTools SNP 85599 85599 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold154 SAMTools SNP 86107 86107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 86867 86867 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold154 SAMTools SNP 87128 87128 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold154 SAMTools SNP 87146 87146 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C155:99 scaffold154 SAMTools SNP 87227 87227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold154 SAMTools SNP 87606 87606 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold154 SAMTools SNP 87687 87687 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold154 SAMTools SNP 88065 88065 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold154 SAMTools SNP 88833 88833 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold154 SAMTools SNP 89111 89111 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold154 SAMTools SNP 89315 89315 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C14%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold154 SAMTools SNP 94055 94055 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.35%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C8:11 scaffold1541 SAMTools SNP 477 477 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1541 SAMTools SNP 479 479 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1541 SAMTools SNP 497 497 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1541 SAMTools SNP 6047 6047 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 6448 6448 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 7808 7808 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1541 SAMTools SNP 7820 7820 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1541 SAMTools SNP 29278 29278 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 29308 29308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 43057 43057 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1541 SAMTools SNP 43445 43445 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C180:30 scaffold1541 SAMTools SNP 62943 62943 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1541 SAMTools SNP 62963 62963 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1541 SAMTools SNP 63446 63446 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1541 SAMTools SNP 63461 63461 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1541 SAMTools SNP 74344 74344 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold1541 SAMTools SNP 74692 74692 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C36%2C0:69 scaffold1541 SAMTools SNP 74770 74770 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1541 SAMTools SNP 74996 74996 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C23%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.43%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold1541 SAMTools SNP 77056 77056 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1541 SAMTools SNP 77917 77917 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 77933 77933 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 78008 78008 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 78029 78029 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1541 SAMTools SNP 78546 78546 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C9%2C0:16 scaffold1541 SAMTools SNP 78602 78602 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1541 SAMTools SNP 78706 78706 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1541 SAMTools SNP 79383 79383 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1541 SAMTools SNP 79386 79386 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1541 SAMTools SNP 79388 79388 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold1541 SAMTools SNP 80010 80010 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1541 SAMTools SNP 80407 80407 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C2:5 scaffold1541 SAMTools SNP 80418 80418 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1541 SAMTools SNP 80467 80467 91.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold1541 SAMTools SNP 81676 81676 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.37%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1541 SAMTools SNP 81701 81701 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1541 SAMTools SNP 81936 81936 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1541 SAMTools SNP 84802 84802 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C126:40 scaffold1541 SAMTools SNP 84834 84834 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C174:99 scaffold1541 SAMTools SNP 86473 86473 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1541 SAMTools SNP 86485 86485 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C189:99 scaffold1541 SAMTools SNP 86533 86533 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.21%2C0.0031%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C178:86 scaffold1541 SAMTools SNP 86623 86623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 86883 86883 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C252:99 scaffold1541 SAMTools SNP 87453 87453 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1541 SAMTools SNP 87492 87492 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1541 SAMTools SNP 87519 87519 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 87520 87520 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 87542 87542 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1541 SAMTools SNP 87559 87559 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1541 SAMTools SNP 96681 96681 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1541 SAMTools SNP 96723 96723 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1541 SAMTools SNP 97347 97347 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1541 SAMTools SNP 98989 98989 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1541 SAMTools SNP 103647 103647 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1541 SAMTools SNP 107139 107139 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C57%2C0:99 scaffold1541 SAMTools SNP 107229 107229 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1541 SAMTools SNP 108690 108690 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1541 SAMTools SNP 111262 111262 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C63%2C0:99 scaffold1541 SAMTools SNP 111618 111618 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C45%2C0:85 scaffold1541 SAMTools SNP 112660 112660 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C119:99 scaffold1541 SAMTools SNP 119656 119656 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C27%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C238%2C0:99 scaffold1541 SAMTools SNP 119892 119892 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C36%2C0:69 scaffold1541 SAMTools SNP 119916 119916 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 119934 119934 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.017%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1541 SAMTools SNP 119980 119980 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1541 SAMTools SNP 120858 120858 95 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C66%2C0%2C107%2C32%2C104:99 scaffold1541 SAMTools SNP 121470 121470 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold1541 SAMTools SNP 121610 121610 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.055%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold1541 SAMTools SNP 121836 121836 49.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1541 SAMTools SNP 122511 122511 13.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold1541 SAMTools SNP 122611 122611 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1541 SAMTools SNP 122898 122898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1541 SAMTools SNP 122917 122917 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 122949 122949 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1541 SAMTools SNP 122961 122961 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.35%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1541 SAMTools SNP 124870 124870 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 124999 124999 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D49%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1541 SAMTools SNP 125404 125404 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C51%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1541 SAMTools SNP 125481 125481 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1541 SAMTools SNP 125848 125848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C29%3BMQ%3D48%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1541 SAMTools SNP 125952 125952 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C17%2C20%3BMQ%3D47%3BFQ%3D129%3BPV4%3D0.0043%2C1%2C0.1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1541 SAMTools SNP 126010 126010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C24%3BMQ%3D47%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1541 SAMTools SNP 126321 126321 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 126958 126958 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1541 SAMTools SNP 126964 126964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 127774 127774 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1541 SAMTools SNP 127776 127776 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1541 SAMTools SNP 128418 128418 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1541 SAMTools SNP 128776 128776 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1541 SAMTools SNP 129356 129356 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 129387 129387 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1541 SAMTools SNP 130868 130868 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D80.5%3BPV4%3D0.4%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C110:99 scaffold1541 SAMTools SNP 132464 132464 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1541 SAMTools SNP 137743 137743 27.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1541 SAMTools SNP 137866 137866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 137893 137893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C54%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1541 SAMTools SNP 138316 138316 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C0%2C13%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1541 SAMTools SNP 138376 138376 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1541 SAMTools SNP 138765 138765 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1541 SAMTools SNP 139170 139170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1541 SAMTools SNP 139212 139212 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1541 SAMTools SNP 139380 139380 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 140897 140897 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1541 SAMTools SNP 140910 140910 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1541 SAMTools SNP 141180 141180 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.041%2C0.5%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1541 SAMTools SNP 141255 141255 69.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1541 SAMTools SNP 141316 141316 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1541 SAMTools SNP 141330 141330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C25%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1541 SAMTools SNP 142369 142369 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C35%2C45%3BMQ%3D50%3BFQ%3D208%3BPV4%3D5.9e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1541 SAMTools SNP 142662 142662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C46%2C43%3BMQ%3D50%3BFQ%3D-183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C156%2C0:99 scaffold1541 SAMTools SNP 143173 143173 24 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C3%2C53%2C0%2C50:15 scaffold1541 SAMTools SNP 143181 143181 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C84%2C0:99 scaffold1541 SAMTools SNP 143514 143514 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C18:21 scaffold1541 SAMTools SNP 143631 143631 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1541 SAMTools SNP 152034 152034 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1541 SAMTools SNP 155898 155898 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1541 SAMTools SNP 155938 155938 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C10%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00015%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1541 SAMTools SNP 155944 155944 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D7.6e-06%2C0.038%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1541 SAMTools SNP 158177 158177 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C2%2C0:5 scaffold1541 SAMTools SNP 158779 158779 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1541 SAMTools SNP 158799 158799 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C147:63 scaffold1541 SAMTools SNP 158820 158820 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 158833 158833 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1541 SAMTools SNP 158866 158866 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.55%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1541 SAMTools SNP 159130 159130 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 159152 159152 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1541 SAMTools SNP 159472 159472 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1541 SAMTools SNP 159514 159514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1541 SAMTools SNP 160550 160550 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D38%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1541 SAMTools SNP 160762 160762 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C8%2C0%3BMQ%3D41%3BFQ%3D-35%3BPV4%3D0.002%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C8%2C0:14 scaffold1541 SAMTools SNP 178966 178966 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C35:38 scaffold1541 SAMTools SNP 191483 191483 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold1541 SAMTools SNP 204041 204041 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1541 SAMTools SNP 204129 204129 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1541 SAMTools SNP 204131 204131 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1541 SAMTools SNP 206378 206378 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1541 SAMTools SNP 206517 206517 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1541 SAMTools SNP 206844 206844 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1541 SAMTools SNP 206937 206937 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1541 SAMTools SNP 207318 207318 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1541 SAMTools SNP 208225 208225 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1541 SAMTools SNP 208725 208725 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1541 SAMTools SNP 209016 209016 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold1541 SAMTools SNP 209211 209211 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1541 SAMTools SNP 229883 229883 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1541 SAMTools SNP 230457 230457 66.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold1541 SAMTools SNP 231018 231018 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1541 SAMTools SNP 231738 231738 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1541 SAMTools SNP 231984 231984 22.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1541 SAMTools SNP 232405 232405 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C63:66 scaffold1541 SAMTools SNP 232445 232445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1541 SAMTools SNP 233339 233339 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.095%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1541 SAMTools SNP 233441 233441 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1541 SAMTools SNP 235007 235007 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1541 SAMTools SNP 235038 235038 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold1541 SAMTools SNP 288031 288031 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1541 SAMTools SNP 290663 290663 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1541 SAMTools SNP 290712 290712 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1541 SAMTools SNP 292096 292096 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1541 SAMTools SNP 293146 293146 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1541 SAMTools SNP 293503 293503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C28%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00024%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1541 SAMTools SNP 295524 295524 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0094%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.41%2C0.001%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1541 SAMTools SNP 296408 296408 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1541 SAMTools SNP 296552 296552 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1541 SAMTools SNP 296554 296554 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 296590 296590 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1541 SAMTools SNP 297044 297044 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1541 SAMTools SNP 297059 297059 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1541 SAMTools SNP 298783 298783 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1541 SAMTools SNP 298844 298844 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.46%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1541 SAMTools SNP 298873 298873 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold1541 SAMTools SNP 300811 300811 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1541 SAMTools SNP 300832 300832 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1541 SAMTools SNP 300874 300874 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C90%2C0:99 scaffold1541 SAMTools SNP 306756 306756 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1541 SAMTools SNP 309396 309396 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1541 SAMTools SNP 309454 309454 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C0%2C38%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0023%2C2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1541 SAMTools SNP 310174 310174 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1541 SAMTools SNP 322568 322568 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1541 SAMTools SNP 331143 331143 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1541 SAMTools SNP 333982 333982 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1541 SAMTools SNP 334004 334004 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1541 SAMTools SNP 334538 334538 69.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold1541 SAMTools SNP 337245 337245 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0166%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1541 SAMTools SNP 337870 337870 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1541 SAMTools SNP 337895 337895 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1541 SAMTools SNP 337943 337943 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1541 SAMTools SNP 338450 338450 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1541 SAMTools SNP 340150 340150 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 340684 340684 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1541 SAMTools SNP 347072 347072 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C27%2C0:51 scaffold1541 SAMTools SNP 347167 347167 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C160:99 scaffold1541 SAMTools SNP 347554 347554 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1541 SAMTools SNP 347574 347574 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1541 SAMTools SNP 347601 347601 12.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1541 SAMTools SNP 360792 360792 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1541 SAMTools SNP 360858 360858 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1541 SAMTools SNP 360859 360859 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1541 SAMTools SNP 361074 361074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1541 SAMTools SNP 361088 361088 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1541 SAMTools SNP 376113 376113 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1541 SAMTools SNP 429960 429960 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1541 SAMTools SNP 451988 451988 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1541 SAMTools SNP 487183 487183 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1541 SAMTools SNP 488582 488582 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1543 SAMTools SNP 13012 13012 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1543 SAMTools SNP 13630 13630 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1543 SAMTools SNP 13668 13668 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1543 SAMTools SNP 13695 13695 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C5%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.082%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C201:99 scaffold1543 SAMTools SNP 13728 13728 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1543 SAMTools SNP 14296 14296 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1543 SAMTools SNP 25577 25577 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D21%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C105%2C0:72 scaffold1543 SAMTools SNP 26265 26265 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C81%2C70%2C37%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.046%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1543 SAMTools SNP 26856 26856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C68%2C68%2C64%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.72%2C6.9e-36%2C0.00018%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1543 SAMTools SNP 26958 26958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C97%2C116%2C26%3BMQ%3D49%3BFQ%3D225%3BPV4%3D9.2e-07%2C1%2C2.9e-08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1543 SAMTools SNP 28622 28622 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D946%3BVDB%3D0.0447%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C7%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D0.21%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C10:13 scaffold1543 SAMTools SNP 28982 28982 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C29:32 scaffold1543 SAMTools SNP 29048 29048 72.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C15%2C0:27 scaffold1543 SAMTools SNP 47535 47535 21.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1546 SAMTools SNP 1827 1827 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1546 SAMTools SNP 1842 1842 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1546 SAMTools SNP 2096 2096 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1546 SAMTools SNP 23535 23535 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1546 SAMTools SNP 23583 23583 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1546 SAMTools SNP 28856 28856 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.36%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C235:99 scaffold1546 SAMTools SNP 28881 28881 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1546 SAMTools SNP 32297 32297 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold1546 SAMTools SNP 32622 32622 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.62%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1546 SAMTools SNP 32652 32652 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0031%2C1.7e-07%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1546 SAMTools SNP 32679 32679 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 34389 34389 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 34407 34407 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C1%2C11%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.67%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1546 SAMTools SNP 34459 34459 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.36%2C2.1e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C234:99 scaffold1546 SAMTools SNP 34488 34488 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1546 SAMTools SNP 35219 35219 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C5%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.56%2C0.00022%2C0.042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1546 SAMTools SNP 35751 35751 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C1%3BMQ%3D47%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1546 SAMTools SNP 36385 36385 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C17%2C0%3BMQ%3D49%3BFQ%3D101%3BPV4%3D0.09%2C8.3e-07%2C0.45%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1546 SAMTools SNP 36810 36810 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.06%2C7.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1546 SAMTools SNP 37219 37219 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1546 SAMTools SNP 37344 37344 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1546 SAMTools SNP 37347 37347 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.41%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C209:99 scaffold1546 SAMTools SNP 37646 37646 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.45%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1546 SAMTools SNP 40512 40512 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1546 SAMTools SNP 43793 43793 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C48%2C0:93 scaffold1546 SAMTools SNP 44695 44695 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C200:99 scaffold1546 SAMTools SNP 44860 44860 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C5%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1546 SAMTools SNP 44866 44866 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1546 SAMTools SNP 45163 45163 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C14%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.087%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 45494 45494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 45781 45781 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 46211 46211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1546 SAMTools SNP 46768 46768 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C7%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0026%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1546 SAMTools SNP 46980 46980 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 47132 47132 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C56%2C0%2C23%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.058%2C4.4e-10%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1546 SAMTools SNP 47919 47919 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 47934 47934 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 47982 47982 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C31%2C0%2C11%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.094%2C0.44%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1546 SAMTools SNP 52711 52711 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C29%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1546 SAMTools SNP 52861 52861 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C10%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 52900 52900 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C15%2C42%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C0.00091%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 53175 53175 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C46%2C8%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 55039 55039 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C3%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 55093 55093 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1546 SAMTools SNP 55159 55159 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1546 SAMTools SNP 55189 55189 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1546 SAMTools SNP 55556 55556 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1546 SAMTools SNP 58104 58104 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.042%2C0.26%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1546 SAMTools SNP 58485 58485 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C61%2C2%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.5%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1546 SAMTools SNP 58499 58499 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C69%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 65056 65056 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C0%2C16%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.024%2C0.0006%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1546 SAMTools SNP 67076 67076 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C0%2C95%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.047%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 71009 71009 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.18%2C1%2C8.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 79104 79104 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C37%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.007%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 80166 80166 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C18%2C3%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.00073%2C0.00076%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1546 SAMTools SNP 80194 80194 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C48%2C8%2C0%3BMQ%3D49%3BFQ%3D25%3BPV4%3D1.7e-05%2C1%2C0.2%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1546 SAMTools SNP 80244 80244 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1546 SAMTools SNP 80266 80266 3.14 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D22%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C15%2C0:12 scaffold1546 SAMTools SNP 80357 80357 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C34%2C29%2C7%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.00059%2C9.4e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 80389 80389 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C9%2C19%3BMQ%3D40%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C0.49%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 80438 80438 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C1%2C2%3BMQ%3D38%3BFQ%3D22%3BPV4%3D0.19%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1546 SAMTools SNP 80498 80498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C12%2C38%3BMQ%3D41%3BFQ%3D225%3BPV4%3D3.7e-08%2C1%2C0.0022%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 80801 80801 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1546 SAMTools SNP 81925 81925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C60%2C83%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1546 SAMTools SNP 82685 82685 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C2%2C97%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1546 SAMTools SNP 153409 153409 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1546 SAMTools SNP 182530 182530 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1546 SAMTools SNP 182562 182562 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1546 SAMTools SNP 183203 183203 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1546 SAMTools SNP 183810 183810 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C173:82 scaffold1546 SAMTools SNP 183822 183822 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1546 SAMTools SNP 184265 184265 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1546 SAMTools SNP 185319 185319 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1546 SAMTools SNP 185639 185639 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1546 SAMTools SNP 185732 185732 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1546 SAMTools SNP 195575 195575 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1546 SAMTools SNP 196632 196632 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1546 SAMTools SNP 198133 198133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1546 SAMTools SNP 218272 218272 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1546 SAMTools SNP 266701 266701 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold1546 SAMTools SNP 266895 266895 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1546 SAMTools SNP 266904 266904 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1546 SAMTools SNP 266918 266918 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C124:44 scaffold1546 SAMTools SNP 267122 267122 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C52:55 scaffold1546 SAMTools SNP 267164 267164 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C31:34 scaffold1546 SAMTools SNP 267466 267466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1546 SAMTools SNP 268588 268588 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1546 SAMTools SNP 268597 268597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1546 SAMTools SNP 268624 268624 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1546 SAMTools SNP 270207 270207 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C48%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1546 SAMTools SNP 271585 271585 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.028%2C0.036%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1546 SAMTools SNP 271634 271634 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1546 SAMTools SNP 271890 271890 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1546 SAMTools SNP 272624 272624 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C30%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0061%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1546 SAMTools SNP 272673 272673 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1546 SAMTools SNP 272906 272906 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1546 SAMTools SNP 273251 273251 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C132%2C0:99 scaffold1546 SAMTools SNP 274030 274030 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1551 SAMTools SNP 2490 2490 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1551 SAMTools SNP 2930 2930 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1551 SAMTools SNP 3371 3371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1551 SAMTools SNP 3398 3398 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1551 SAMTools SNP 3440 3440 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1551 SAMTools SNP 6006 6006 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1551 SAMTools SNP 6072 6072 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1551 SAMTools SNP 6084 6084 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1551 SAMTools SNP 6854 6854 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1551 SAMTools SNP 6872 6872 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1551 SAMTools SNP 7577 7577 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1551 SAMTools SNP 7912 7912 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C95:98 scaffold1551 SAMTools SNP 8015 8015 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.1%2C0.00032%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C110:55 scaffold1551 SAMTools SNP 8412 8412 99.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C18%2C0:33 scaffold1551 SAMTools SNP 8472 8472 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.03%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C234:31 scaffold1551 SAMTools SNP 9002 9002 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold1551 SAMTools SNP 13517 13517 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0:51 scaffold1551 SAMTools SNP 14352 14352 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold1551 SAMTools SNP 32150 32150 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1551 SAMTools SNP 32529 32529 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1551 SAMTools SNP 32561 32561 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1551 SAMTools SNP 58878 58878 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1551 SAMTools SNP 60680 60680 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1551 SAMTools SNP 91631 91631 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1551 SAMTools SNP 96181 96181 13.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1551 SAMTools SNP 96376 96376 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1551 SAMTools SNP 151392 151392 4.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1551 SAMTools SNP 154995 154995 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C11%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.00035%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1551 SAMTools SNP 157288 157288 5.85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D16%3BFQ%3D-31%3BPV4%3D0.3%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C4%2C0:4 scaffold1551 SAMTools SNP 216760 216760 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1551 SAMTools SNP 217108 217108 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1551 SAMTools SNP 240936 240936 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1551 SAMTools SNP 240999 240999 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1551 SAMTools SNP 257914 257914 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1551 SAMTools SNP 257959 257959 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1551 SAMTools SNP 285550 285550 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1551 SAMTools SNP 286251 286251 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1551 SAMTools SNP 286840 286840 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1551 SAMTools SNP 286860 286860 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1553 SAMTools SNP 7091 7091 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1553 SAMTools SNP 7148 7148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1553 SAMTools SNP 8267 8267 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1553 SAMTools SNP 8269 8269 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1553 SAMTools SNP 8284 8284 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1553 SAMTools SNP 8599 8599 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1553 SAMTools SNP 10270 10270 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold1553 SAMTools SNP 11772 11772 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1553 SAMTools SNP 12205 12205 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1553 SAMTools SNP 12725 12725 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1553 SAMTools SNP 12770 12770 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1553 SAMTools SNP 12794 12794 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1553 SAMTools SNP 13409 13409 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1553 SAMTools SNP 18226 18226 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1553 SAMTools SNP 18234 18234 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold1553 SAMTools SNP 18420 18420 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1553 SAMTools SNP 18649 18649 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1553 SAMTools SNP 19562 19562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1553 SAMTools SNP 19739 19739 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1553 SAMTools SNP 19829 19829 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1553 SAMTools SNP 20068 20068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1553 SAMTools SNP 20078 20078 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1553 SAMTools SNP 27418 27418 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1553 SAMTools SNP 33779 33779 77.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold1553 SAMTools SNP 44789 44789 47.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1553 SAMTools SNP 45123 45123 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1553 SAMTools SNP 45425 45425 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1553 SAMTools SNP 50791 50791 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1553 SAMTools SNP 56317 56317 50.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold1553 SAMTools SNP 58638 58638 16.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1553 SAMTools SNP 58681 58681 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1553 SAMTools SNP 60078 60078 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1553 SAMTools SNP 91172 91172 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1553 SAMTools SNP 91194 91194 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1554 SAMTools SNP 619 619 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C24%2C0%3BMQ%3D45%3BFQ%3D44%3BPV4%3D1%2C0.058%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C71:74 scaffold1554 SAMTools SNP 649 649 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C24%2C0%3BMQ%3D45%3BFQ%3D70%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C97:99 scaffold1554 SAMTools SNP 766 766 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C9%2C0%3BMQ%3D45%3BFQ%3D48%3BPV4%3D1%2C1%2C2.6e-07%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C245:78 scaffold1554 SAMTools SNP 1041 1041 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1554 SAMTools SNP 1154 1154 65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold1554 SAMTools SNP 3266 3266 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.59%3BPV4%3D1%2C1.3e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C26:29 scaffold1554 SAMTools SNP 3582 3582 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1554 SAMTools SNP 3599 3599 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C25:28 scaffold1554 SAMTools SNP 7325 7325 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1554 SAMTools SNP 7371 7371 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1554 SAMTools SNP 8207 8207 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1554 SAMTools SNP 8254 8254 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C115:99 scaffold1554 SAMTools SNP 8482 8482 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1554 SAMTools SNP 10471 10471 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1554 SAMTools SNP 11111 11111 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1554 SAMTools SNP 11144 11144 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1554 SAMTools SNP 11186 11186 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1554 SAMTools SNP 12217 12217 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1554 SAMTools SNP 12851 12851 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 14717 14717 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1554 SAMTools SNP 14756 14756 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1554 SAMTools SNP 15240 15240 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 15454 15454 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1554 SAMTools SNP 15713 15713 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1554 SAMTools SNP 16832 16832 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.089%2C0.46%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1554 SAMTools SNP 16841 16841 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.023%2C1%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C167:99 scaffold1554 SAMTools SNP 16850 16850 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C248:99 scaffold1554 SAMTools SNP 20573 20573 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1554 SAMTools SNP 20807 20807 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1554 SAMTools SNP 21634 21634 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1554 SAMTools SNP 21664 21664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1554 SAMTools SNP 21860 21860 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1554 SAMTools SNP 22059 22059 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-05%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1554 SAMTools SNP 22149 22149 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.084%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1554 SAMTools SNP 24042 24042 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1554 SAMTools SNP 24060 24060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1554 SAMTools SNP 24638 24638 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1554 SAMTools SNP 24690 24690 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1554 SAMTools SNP 25058 25058 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C124:99 scaffold1554 SAMTools SNP 25738 25738 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.5%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C145:99 scaffold1554 SAMTools SNP 25742 25742 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.0022%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1554 SAMTools SNP 25819 25819 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold1554 SAMTools SNP 26872 26872 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.011%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1554 SAMTools SNP 26883 26883 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.11%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1554 SAMTools SNP 28278 28278 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 29890 29890 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1554 SAMTools SNP 35507 35507 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold1554 SAMTools SNP 35587 35587 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.42%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1554 SAMTools SNP 35848 35848 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold1554 SAMTools SNP 56542 56542 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1554 SAMTools SNP 56543 56543 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1554 SAMTools SNP 64457 64457 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold1554 SAMTools SNP 73601 73601 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D48%3BFQ%3D126%3BPV4%3D0.45%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C153:99 scaffold1554 SAMTools SNP 73607 73607 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D48%3BFQ%3D118%3BPV4%3D0.45%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C153:99 scaffold1554 SAMTools SNP 74545 74545 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.34%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C129:99 scaffold1554 SAMTools SNP 74584 74584 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1554 SAMTools SNP 75170 75170 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 75459 75459 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1554 SAMTools SNP 119093 119093 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1554 SAMTools SNP 119102 119102 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C233:99 scaffold1554 SAMTools SNP 119195 119195 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.28%2C0.23%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1554 SAMTools SNP 119723 119723 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.58%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1554 SAMTools SNP 119753 119753 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold1554 SAMTools SNP 119780 119780 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold1554 SAMTools SNP 119834 119834 4.75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1554 SAMTools SNP 119867 119867 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1554 SAMTools SNP 119939 119939 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1554 SAMTools SNP 120368 120368 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C27%2C0:51 scaffold1554 SAMTools SNP 120374 120374 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.036%2C0.019%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C170:39 scaffold1554 SAMTools SNP 120460 120460 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1554 SAMTools SNP 120647 120647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1554 SAMTools SNP 121258 121258 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1554 SAMTools SNP 121315 121315 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1554 SAMTools SNP 122467 122467 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1554 SAMTools SNP 123028 123028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1554 SAMTools SNP 123031 123031 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1554 SAMTools SNP 124574 124574 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold1554 SAMTools SNP 133818 133818 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C47%2C12%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1554 SAMTools SNP 133842 133842 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.071%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1554 SAMTools SNP 133940 133940 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.29%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1554 SAMTools SNP 133977 133977 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.037%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1554 SAMTools SNP 134136 134136 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1554 SAMTools SNP 134214 134214 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.096%2C0.27%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1554 SAMTools SNP 134558 134558 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.068%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1554 SAMTools SNP 135004 135004 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.18%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1554 SAMTools SNP 138581 138581 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C14%2C21%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00033%2C2.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1554 SAMTools SNP 138647 138647 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C10%2C3%3BMQ%3D50%3BFQ%3D176%3BPV4%3D2.4e-05%2C0.01%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1554 SAMTools SNP 139233 139233 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1554 SAMTools SNP 141045 141045 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C0%2C4%3BMQ%3D49%3BFQ%3D32%3BPV4%3D0.3%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1554 SAMTools SNP 141434 141434 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D22%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.016%2C0.00024%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1554 SAMTools SNP 141478 141478 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C4%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.27%2C0.084%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1554 SAMTools SNP 142762 142762 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C9%2C0%3BMQ%3D48%3BFQ%3D91%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1554 SAMTools SNP 143257 143257 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.014%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1554 SAMTools SNP 143374 143374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C7%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1554 SAMTools SNP 144454 144454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1554 SAMTools SNP 144466 144466 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1554 SAMTools SNP 144484 144484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1554 SAMTools SNP 144529 144529 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C4%2C82%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.37%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1554 SAMTools SNP 144808 144808 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C0%2C69%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1554 SAMTools SNP 145099 145099 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C45%2C0:87 scaffold1554 SAMTools SNP 145507 145507 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C16%2C9%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.35%2C4.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1554 SAMTools SNP 145530 145530 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C9%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C154%2C0:99 scaffold1554 SAMTools SNP 145783 145783 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0039%2C1.6e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1554 SAMTools SNP 145931 145931 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.002%2C9.2e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1554 SAMTools SNP 145935 145935 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C60%2C0:99 scaffold1554 SAMTools SNP 145989 145989 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C20%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C9.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1554 SAMTools SNP 146083 146083 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D79.4%3BPV4%3D1%2C0.046%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C107:99 scaffold1554 SAMTools SNP 146098 146098 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C201:47 scaffold1554 SAMTools SNP 151695 151695 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1554 SAMTools SNP 167480 167480 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1554 SAMTools SNP 410223 410223 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C24%2C0%3BMQ%3D49%3BFQ%3D134%3BPV4%3D0.00033%2C6.2e-06%2C0.47%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1554 SAMTools SNP 410226 410226 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C15%2C10%2C0%3BMQ%3D49%3BFQ%3D19.1%3BPV4%3D0.046%2C0.0097%2C0.13%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1554 SAMTools SNP 410260 410260 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C7%2C35%3BMQ%3D49%3BFQ%3D124%3BPV4%3D0.27%2C4.4e-35%2C0.098%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1554 SAMTools SNP 410678 410678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1554 SAMTools SNP 416845 416845 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1554 SAMTools SNP 421763 421763 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0034%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1554 SAMTools SNP 422834 422834 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold1554 SAMTools SNP 425669 425669 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1554 SAMTools SNP 426199 426199 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 456461 456461 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 475520 475520 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1554 SAMTools SNP 475548 475548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D41%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1554 SAMTools SNP 480842 480842 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D29%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C105%2C0:99 scaffold1554 SAMTools SNP 480880 480880 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C48%2C0:93 scaffold1554 SAMTools SNP 480939 480939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D34%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1554 SAMTools SNP 482388 482388 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1554 SAMTools SNP 482565 482565 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1554 SAMTools SNP 482888 482888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 485961 485961 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1554 SAMTools SNP 491761 491761 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 491776 491776 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1554 SAMTools SNP 494236 494236 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1554 SAMTools SNP 494788 494788 14.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1554 SAMTools SNP 495450 495450 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1554 SAMTools SNP 498140 498140 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C24%2C0:38 scaffold1556 SAMTools SNP 1 1 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1556 SAMTools SNP 62 62 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1556 SAMTools SNP 186 186 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1556 SAMTools SNP 1375 1375 3.02 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C30%2C27%2C30%2C0%2C27:4 scaffold1556 SAMTools SNP 1482 1482 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1556 SAMTools SNP 2170 2170 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1556 SAMTools SNP 2424 2424 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1556 SAMTools SNP 2448 2448 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1556 SAMTools SNP 78797 78797 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C39%2C0:74 scaffold1556 SAMTools SNP 84030 84030 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1556 SAMTools SNP 84678 84678 27.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1556 SAMTools SNP 85777 85777 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1556 SAMTools SNP 89836 89836 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C39:42 scaffold1556 SAMTools SNP 102939 102939 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C97%2C25%2C101%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.047%2C1.6e-09%2C1.3e-08%2C6.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 143727 143727 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1556 SAMTools SNP 170970 170970 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.54%2C5e-22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1556 SAMTools SNP 172086 172086 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold1556 SAMTools SNP 183657 183657 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1556 SAMTools SNP 188958 188958 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D39%3BFQ%3D-8.63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C19:22 scaffold1556 SAMTools SNP 188974 188974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D40%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1556 SAMTools SNP 189304 189304 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D867%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C766%2C99%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1556 SAMTools SNP 189700 189700 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C723%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1556 SAMTools SNP 190452 190452 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C51%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1556 SAMTools SNP 190493 190493 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C33%2C0:62 scaffold1556 SAMTools SNP 190566 190566 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1556 SAMTools SNP 190606 190606 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1556 SAMTools SNP 209346 209346 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1556 SAMTools SNP 226380 226380 213 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C45%2C0:87 scaffold1556 SAMTools SNP 231946 231946 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold1556 SAMTools SNP 232247 232247 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.2%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C238:99 scaffold1556 SAMTools SNP 235961 235961 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1556 SAMTools SNP 238397 238397 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1556 SAMTools SNP 238496 238496 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1556 SAMTools SNP 240802 240802 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1556 SAMTools SNP 261331 261331 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1.6e-24%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 261411 261411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C41%2C57%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 262227 262227 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C16%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 262254 262254 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C40%2C1%2C40%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0015%2C0.00065%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 262263 262263 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C42%2C0%2C43%3BMQ%3D49%3BFQ%3D220%3BPV4%3D0.00043%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1556 SAMTools SNP 262485 262485 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C21%3BMQ%3D46%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1556 SAMTools SNP 263128 263128 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C14%2C12%3BMQ%3D42%3BFQ%3D176%3BPV4%3D0.00012%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1556 SAMTools SNP 263338 263338 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1556 SAMTools SNP 263392 263392 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C87%2C2%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C0.00023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1556 SAMTools SNP 263413 263413 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C78%2C12%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.56%2C1%2C0.0038%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1558 SAMTools SNP 2178 2178 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1180%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D619%2C0%2C561%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1558 SAMTools SNP 2190 2190 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1763%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1363%2C0%2C400%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C2.2e-282;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1558 SAMTools SNP 3078 3078 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3004%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1297%2C19%2C1688%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1558 SAMTools SNP 3441 3441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3833%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D218%2C2267%2C25%2C1183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-17%2C0.24%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1558 SAMTools SNP 11754 11754 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1558 SAMTools SNP 20733 20733 51.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1558 SAMTools SNP 20793 20793 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1558 SAMTools SNP 51222 51222 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1558 SAMTools SNP 51979 51979 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1558 SAMTools SNP 52876 52876 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1558 SAMTools SNP 84722 84722 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1558 SAMTools SNP 85985 85985 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C207:36 scaffold1559 SAMTools SNP 61 61 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D49%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C230:76 scaffold1559 SAMTools SNP 1984 1984 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1559 SAMTools SNP 2611 2611 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D540%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C168%2C65%2C67%3BMQ%3D31%3BFQ%3D132%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C176:99 scaffold1559 SAMTools SNP 3509 3509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D570%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C79%2C148%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 3551 3551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D269%2C136%2C99%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.083%2C1%2C2.9e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 3575 3575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D554%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1559 SAMTools SNP 3601 3601 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D696%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C167%2C72%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 17308 17308 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold1559 SAMTools SNP 17353 17353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1559 SAMTools SNP 23125 23125 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1559 SAMTools SNP 23272 23272 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.29%2C6.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1559 SAMTools SNP 23374 23374 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C35%2C3%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1559 SAMTools SNP 23379 23379 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C27%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1559 SAMTools SNP 24072 24072 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 25234 25234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 25300 25300 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1559 SAMTools SNP 28898 28898 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1559 SAMTools SNP 28906 28906 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1559 SAMTools SNP 32014 32014 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1559 SAMTools SNP 34122 34122 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1559 SAMTools SNP 34645 34645 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1559 SAMTools SNP 35108 35108 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1559 SAMTools SNP 35456 35456 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1559 SAMTools SNP 35945 35945 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1559 SAMTools SNP 36477 36477 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1559 SAMTools SNP 36522 36522 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1559 SAMTools SNP 36851 36851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1559 SAMTools SNP 37094 37094 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1559 SAMTools SNP 37339 37339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1559 SAMTools SNP 38268 38268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1559 SAMTools SNP 38347 38347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1559 SAMTools SNP 38715 38715 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 39458 39458 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.023%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 39532 39532 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C1%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1559 SAMTools SNP 39939 39939 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold1559 SAMTools SNP 39969 39969 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.01%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C143:99 scaffold1559 SAMTools SNP 39984 39984 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.42%2C0.042%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C226:41 scaffold1559 SAMTools SNP 40038 40038 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1559 SAMTools SNP 40088 40088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 41051 41051 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C201:66 scaffold1559 SAMTools SNP 41053 41053 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.23%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1559 SAMTools SNP 43260 43260 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1559 SAMTools SNP 43279 43279 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1559 SAMTools SNP 43809 43809 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1559 SAMTools SNP 43827 43827 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold1559 SAMTools SNP 43975 43975 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1559 SAMTools SNP 43995 43995 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold1559 SAMTools SNP 44422 44422 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1559 SAMTools SNP 45739 45739 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C28%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.014%2C0.22%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C251:99 scaffold1559 SAMTools SNP 45775 45775 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C0%2C216%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1559 SAMTools SNP 48447 48447 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C317%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1559 SAMTools SNP 48751 48751 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C374%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1559 SAMTools SNP 48784 48784 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C229%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1559 SAMTools SNP 52896 52896 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1559 SAMTools SNP 52984 52984 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1559 SAMTools SNP 53161 53161 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1559 SAMTools SNP 53260 53260 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold156 SAMTools SNP 8177 8177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold156 SAMTools SNP 8982 8982 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold156 SAMTools SNP 9613 9613 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C78%2C0:99 scaffold156 SAMTools SNP 12238 12238 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C57%2C0:99 scaffold156 SAMTools SNP 12485 12485 12.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold156 SAMTools SNP 12632 12632 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 12795 12795 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold156 SAMTools SNP 12997 12997 31.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold156 SAMTools SNP 13010 13010 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold156 SAMTools SNP 13320 13320 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 13462 13462 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 13470 13470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 14111 14111 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold156 SAMTools SNP 28562 28562 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold156 SAMTools SNP 31677 31677 29.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold156 SAMTools SNP 31755 31755 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1.3e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C63:66 scaffold156 SAMTools SNP 31949 31949 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C4.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C152:74 scaffold156 SAMTools SNP 35393 35393 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold156 SAMTools SNP 37190 37190 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold156 SAMTools SNP 144215 144215 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold156 SAMTools SNP 144666 144666 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 145606 145606 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 147126 147126 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold156 SAMTools SNP 148197 148197 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold156 SAMTools SNP 148257 148257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 150248 150248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 150380 150380 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C21%2C57%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 150757 150757 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C50%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 151592 151592 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.5e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold156 SAMTools SNP 157460 157460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C47%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold156 SAMTools SNP 157484 157484 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold156 SAMTools SNP 157559 157559 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.074%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C218:99 scaffold156 SAMTools SNP 161563 161563 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 163229 163229 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 164288 164288 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C25%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.54%2C4.5e-56%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold156 SAMTools SNP 164426 164426 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C18%2C23%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.83%2C3e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold156 SAMTools SNP 164696 164696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C8.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 164753 164753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 167317 167317 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold156 SAMTools SNP 167335 167335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C50%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold156 SAMTools SNP 168036 168036 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C11%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.11%2C0.45%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold156 SAMTools SNP 168057 168057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C21%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 168230 168230 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C15%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.042%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold156 SAMTools SNP 168296 168296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 168562 168562 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold156 SAMTools SNP 169044 169044 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold156 SAMTools SNP 169116 169116 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 169224 169224 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 171352 171352 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold156 SAMTools SNP 171705 171705 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C0.04%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold156 SAMTools SNP 171761 171761 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C119:42 scaffold156 SAMTools SNP 172193 172193 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold156 SAMTools SNP 172202 172202 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold156 SAMTools SNP 172943 172943 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold156 SAMTools SNP 173100 173100 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C43%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold156 SAMTools SNP 175578 175578 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.65%2C0.16%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold156 SAMTools SNP 176355 176355 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold156 SAMTools SNP 176440 176440 31.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold156 SAMTools SNP 176579 176579 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold156 SAMTools SNP 181055 181055 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold156 SAMTools SNP 181730 181730 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold156 SAMTools SNP 181829 181829 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold156 SAMTools SNP 181869 181869 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold156 SAMTools SNP 182036 182036 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold156 SAMTools SNP 182144 182144 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 182428 182428 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold156 SAMTools SNP 182474 182474 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 182644 182644 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.54%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C227:99 scaffold156 SAMTools SNP 183212 183212 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold156 SAMTools SNP 187015 187015 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C112:99 scaffold156 SAMTools SNP 187323 187323 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 187347 187347 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1.4e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C26:29 scaffold156 SAMTools SNP 187830 187830 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 187835 187835 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 191166 191166 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C15%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3e-28%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold156 SAMTools SNP 193556 193556 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 193589 193589 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold156 SAMTools SNP 194543 194543 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold156 SAMTools SNP 194558 194558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 194593 194593 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 204244 204244 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 204441 204441 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.44%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold156 SAMTools SNP 207958 207958 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold156 SAMTools SNP 207988 207988 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.003%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C233:99 scaffold156 SAMTools SNP 208126 208126 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold156 SAMTools SNP 208503 208503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold156 SAMTools SNP 209104 209104 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 209909 209909 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.49%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold156 SAMTools SNP 210076 210076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold156 SAMTools SNP 210109 210109 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold156 SAMTools SNP 210351 210351 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold156 SAMTools SNP 210393 210393 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 211010 211010 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold156 SAMTools SNP 211018 211018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C9%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold156 SAMTools SNP 211851 211851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 212318 212318 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 212368 212368 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold156 SAMTools SNP 214380 214380 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold156 SAMTools SNP 214818 214818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold156 SAMTools SNP 214845 214845 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.25%2C0.0039%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold156 SAMTools SNP 215079 215079 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold156 SAMTools SNP 216269 216269 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold156 SAMTools SNP 216299 216299 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.52%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C190:99 scaffold156 SAMTools SNP 216598 216598 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C11%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.6e-18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold156 SAMTools SNP 217010 217010 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold156 SAMTools SNP 217154 217154 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C5%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.7%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold156 SAMTools SNP 217329 217329 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 220497 220497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C1%2C36%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 220500 220500 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C63%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 220682 220682 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C41%2C31%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D6.5e-06%2C1%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold156 SAMTools SNP 223193 223193 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold156 SAMTools SNP 223237 223237 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C20%2C6%2C21%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 223259 223259 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C18%2C33%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.69%2C7.2e-14%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 223575 223575 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold156 SAMTools SNP 223577 223577 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold156 SAMTools SNP 224583 224583 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 224613 224613 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 225242 225242 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C87%2C12%2C13%3BMQ%3D50%3BFQ%3D62%3BPV4%3D7.8e-05%2C1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold156 SAMTools SNP 225290 225290 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C79%2C3%2C12%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold156 SAMTools SNP 225660 225660 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold156 SAMTools SNP 226517 226517 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 226639 226639 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C30%2C0:51 scaffold156 SAMTools SNP 233851 233851 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C53%2C0%2C12%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.35%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 234242 234242 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 234578 234578 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C3%2C14%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.035%2C2.9e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold156 SAMTools SNP 236144 236144 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold156 SAMTools SNP 245431 245431 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold156 SAMTools SNP 245442 245442 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.44%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold156 SAMTools SNP 245460 245460 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold156 SAMTools SNP 247297 247297 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 247309 247309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C60%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold156 SAMTools SNP 247329 247329 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.34%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold156 SAMTools SNP 249564 249564 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C22%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C252:99 scaffold156 SAMTools SNP 250818 250818 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 250824 250824 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 252646 252646 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold156 SAMTools SNP 252654 252654 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 252685 252685 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 252692 252692 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold156 SAMTools SNP 258205 258205 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 262063 262063 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C0.16%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold156 SAMTools SNP 264796 264796 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C193:99 scaffold156 SAMTools SNP 265005 265005 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold156 SAMTools SNP 266042 266042 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.14%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold156 SAMTools SNP 266466 266466 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 266468 266468 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.033%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 266507 266507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C18%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.083%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold156 SAMTools SNP 266523 266523 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold156 SAMTools SNP 268086 268086 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.54%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold156 SAMTools SNP 269770 269770 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold156 SAMTools SNP 269998 269998 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold156 SAMTools SNP 271257 271257 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 282130 282130 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold156 SAMTools SNP 282341 282341 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C249:66 scaffold156 SAMTools SNP 285306 285306 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold156 SAMTools SNP 285343 285343 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 285416 285416 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold156 SAMTools SNP 285795 285795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 289304 289304 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold156 SAMTools SNP 289404 289404 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold156 SAMTools SNP 289411 289411 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.46%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold156 SAMTools SNP 292866 292866 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold156 SAMTools SNP 292908 292908 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 293834 293834 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 301560 301560 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0079%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold156 SAMTools SNP 301663 301663 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 301814 301814 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 301822 301822 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 308332 308332 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C51%2C0:99 scaffold156 SAMTools SNP 309598 309598 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C16%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.51%2C3.1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold156 SAMTools SNP 309801 309801 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0032%2C1.2e-06%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold156 SAMTools SNP 311116 311116 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold156 SAMTools SNP 311132 311132 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold156 SAMTools SNP 312847 312847 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0049%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold156 SAMTools SNP 312849 312849 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.19%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold156 SAMTools SNP 313358 313358 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C166%2C14%2C29%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0018%2C0.095%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold156 SAMTools SNP 314118 314118 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C30%2C17%2C19%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.31%2C9e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 314943 314943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C162%2C92%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-17%2C1%2C1%2C6.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 314985 314985 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C67%2C95%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 315267 315267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C95%2C8%2C76%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.18%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 320556 320556 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 320557 320557 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold156 SAMTools SNP 320787 320787 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold156 SAMTools SNP 320886 320886 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C24%2C0:45 scaffold156 SAMTools SNP 320997 320997 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold156 SAMTools SNP 322450 322450 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C0%2C19%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1.2e-06%2C1.8e-17%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold156 SAMTools SNP 323252 323252 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold156 SAMTools SNP 324208 324208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 324241 324241 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C36%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 325187 325187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C131%2C21%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 327697 327697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C14%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 327732 327732 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.037%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold156 SAMTools SNP 327757 327757 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 331356 331356 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold156 SAMTools SNP 334797 334797 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 334804 334804 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 334968 334968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 334995 334995 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 336147 336147 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.59%2C2.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold156 SAMTools SNP 336492 336492 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C35:38 scaffold156 SAMTools SNP 336494 336494 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold156 SAMTools SNP 336569 336569 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold156 SAMTools SNP 336587 336587 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.15%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold156 SAMTools SNP 336593 336593 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold156 SAMTools SNP 337634 337634 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold156 SAMTools SNP 344610 344610 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C106:64 scaffold156 SAMTools SNP 344684 344684 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.093%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold156 SAMTools SNP 344716 344716 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C255%2C0:99 scaffold156 SAMTools SNP 345218 345218 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C16%2C63%2C15%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.41%2C3.8e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold156 SAMTools SNP 345659 345659 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C73%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 346185 346185 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold156 SAMTools SNP 346206 346206 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold156 SAMTools SNP 347543 347543 48.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold156 SAMTools SNP 355997 355997 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold156 SAMTools SNP 361951 361951 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 362020 362020 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 377951 377951 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold156 SAMTools SNP 377988 377988 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold156 SAMTools SNP 378428 378428 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold156 SAMTools SNP 378494 378494 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C4%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold156 SAMTools SNP 379431 379431 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold156 SAMTools SNP 380069 380069 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold156 SAMTools SNP 382663 382663 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 383074 383074 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C14%2C18%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold156 SAMTools SNP 384289 384289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold156 SAMTools SNP 385535 385535 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold156 SAMTools SNP 385545 385545 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold156 SAMTools SNP 385583 385583 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold156 SAMTools SNP 385609 385609 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold156 SAMTools SNP 390672 390672 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold156 SAMTools SNP 390912 390912 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold156 SAMTools SNP 391959 391959 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 393655 393655 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 393697 393697 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold156 SAMTools SNP 397453 397453 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold156 SAMTools SNP 397477 397477 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.097%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C197:99 scaffold156 SAMTools SNP 397857 397857 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold156 SAMTools SNP 397914 397914 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C0.38%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C162:99 scaffold156 SAMTools SNP 398581 398581 154 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold156 SAMTools SNP 399729 399729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 399858 399858 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold156 SAMTools SNP 399922 399922 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold156 SAMTools SNP 402103 402103 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold156 SAMTools SNP 402112 402112 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold156 SAMTools SNP 402372 402372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.15%2C0.13%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold156 SAMTools SNP 403153 403153 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 403168 403168 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold156 SAMTools SNP 403172 403172 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold156 SAMTools SNP 403200 403200 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold156 SAMTools SNP 404210 404210 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 404266 404266 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 405337 405337 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 405345 405345 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 405598 405598 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold156 SAMTools SNP 405632 405632 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 407089 407089 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 414271 414271 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold156 SAMTools SNP 414304 414304 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold156 SAMTools SNP 414698 414698 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold156 SAMTools SNP 422483 422483 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold156 SAMTools SNP 422642 422642 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.026%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold156 SAMTools SNP 423114 423114 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 423123 423123 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 423156 423156 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 425043 425043 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C24%2C0:45 scaffold156 SAMTools SNP 425098 425098 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold156 SAMTools SNP 425942 425942 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 427585 427585 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 427593 427593 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 427599 427599 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 428710 428710 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 428735 428735 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 428758 428758 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold156 SAMTools SNP 429341 429341 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 445264 445264 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold156 SAMTools SNP 445747 445747 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C7%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.76%2C1.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold156 SAMTools SNP 449429 449429 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold156 SAMTools SNP 449524 449524 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 450517 450517 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold156 SAMTools SNP 450523 450523 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold156 SAMTools SNP 450538 450538 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 454133 454133 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 462291 462291 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold156 SAMTools SNP 462472 462472 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C168%2C30%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 462502 462502 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 465662 465662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C53%2C16%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 465952 465952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C45%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold156 SAMTools SNP 466102 466102 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold156 SAMTools SNP 466124 466124 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold156 SAMTools SNP 471484 471484 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 477394 477394 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold156 SAMTools SNP 477444 477444 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold156 SAMTools SNP 477963 477963 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold156 SAMTools SNP 477990 477990 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 478144 478144 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C12:15 scaffold156 SAMTools SNP 478158 478158 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold156 SAMTools SNP 479133 479133 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 480983 480983 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 481038 481038 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 481872 481872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold156 SAMTools SNP 481920 481920 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold156 SAMTools SNP 481959 481959 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 483285 483285 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold156 SAMTools SNP 483396 483396 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold156 SAMTools SNP 483407 483407 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold156 SAMTools SNP 483858 483858 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold156 SAMTools SNP 483915 483915 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold156 SAMTools SNP 485117 485117 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold156 SAMTools SNP 486160 486160 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.0023%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold156 SAMTools SNP 486177 486177 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.23%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold156 SAMTools SNP 486231 486231 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.13%2C2.5e-08%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold156 SAMTools SNP 489073 489073 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 489587 489587 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 490250 490250 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 490691 490691 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold156 SAMTools SNP 490718 490718 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold156 SAMTools SNP 491316 491316 5.5 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C239%2C218%2C204%2C0%2C186:22 scaffold156 SAMTools SNP 491367 491367 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold156 SAMTools SNP 491865 491865 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.32%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold156 SAMTools SNP 491869 491869 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C96:99 scaffold156 SAMTools SNP 491935 491935 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C235:83 scaffold156 SAMTools SNP 491938 491938 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.014%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C235:83 scaffold156 SAMTools SNP 492484 492484 103 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C29%2C5%2C128%2C0%2C122:45 scaffold156 SAMTools SNP 492496 492496 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C64:67 scaffold156 SAMTools SNP 493338 493338 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold156 SAMTools SNP 495432 495432 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold156 SAMTools SNP 495447 495447 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 495585 495585 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 495612 495612 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 498457 498457 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 499574 499574 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 510082 510082 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 512836 512836 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D35%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.49%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C80:39 scaffold156 SAMTools SNP 513885 513885 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold156 SAMTools SNP 515632 515632 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold156 SAMTools SNP 515669 515669 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 517150 517150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 517333 517333 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 517353 517353 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold156 SAMTools SNP 518867 518867 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 520456 520456 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 521712 521712 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 521964 521964 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 522725 522725 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C57%2C0:99 scaffold156 SAMTools SNP 522775 522775 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 522802 522802 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 526798 526798 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C13%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C223:88 scaffold156 SAMTools SNP 527151 527151 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.7e-08%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C107:36 scaffold156 SAMTools SNP 538015 538015 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold156 SAMTools SNP 538233 538233 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold156 SAMTools SNP 539948 539948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 539986 539986 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold156 SAMTools SNP 539993 539993 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold156 SAMTools SNP 540013 540013 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C33%2C0:63 scaffold156 SAMTools SNP 540126 540126 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C30:33 scaffold156 SAMTools SNP 540148 540148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 540847 540847 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold156 SAMTools SNP 540877 540877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold156 SAMTools SNP 541077 541077 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C10%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.61%2C0.054%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold156 SAMTools SNP 542694 542694 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C252:54 scaffold156 SAMTools SNP 542704 542704 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold156 SAMTools SNP 542724 542724 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.048%2C0.072%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C151:99 scaffold156 SAMTools SNP 542897 542897 28.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D21%3BFQ%3D-31%3BPV4%3D1%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C4%2C0:7 scaffold156 SAMTools SNP 542963 542963 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold156 SAMTools SNP 542991 542991 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold156 SAMTools SNP 542992 542992 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D38%3BFQ%3D13.2%3BPV4%3D0.14%2C1%2C0.026%2C7.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C107:42 scaffold156 SAMTools SNP 545008 545008 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold156 SAMTools SNP 545115 545115 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.58%2C4.6e-14%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C179:80 scaffold156 SAMTools SNP 546519 546519 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold156 SAMTools SNP 546734 546734 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold156 SAMTools SNP 547332 547332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C55%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold156 SAMTools SNP 548276 548276 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold156 SAMTools SNP 548312 548312 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 548590 548590 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.36%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C161:99 scaffold156 SAMTools SNP 548977 548977 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 549019 549019 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold156 SAMTools SNP 549280 549280 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold156 SAMTools SNP 549292 549292 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold156 SAMTools SNP 549473 549473 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold156 SAMTools SNP 549506 549506 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold156 SAMTools SNP 549507 549507 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.21%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold156 SAMTools SNP 550067 550067 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C197:99 scaffold156 SAMTools SNP 550070 550070 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.043%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold156 SAMTools SNP 550079 550079 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.035%2C0.23%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold156 SAMTools SNP 550275 550275 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold156 SAMTools SNP 550422 550422 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold156 SAMTools SNP 550482 550482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C16%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold156 SAMTools SNP 551259 551259 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 551307 551307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold156 SAMTools SNP 551312 551312 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold156 SAMTools SNP 551984 551984 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold156 SAMTools SNP 551990 551990 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold156 SAMTools SNP 552130 552130 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.9e-05%2C0.088%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C232:99 scaffold156 SAMTools SNP 552324 552324 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C0.038%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold156 SAMTools SNP 552356 552356 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold156 SAMTools SNP 552365 552365 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.063%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold156 SAMTools SNP 552368 552368 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.063%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold156 SAMTools SNP 553170 553170 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 553229 553229 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00039%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold156 SAMTools SNP 553253 553253 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 553655 553655 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C218:69 scaffold156 SAMTools SNP 553732 553732 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold156 SAMTools SNP 554267 554267 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 554279 554279 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 554530 554530 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 554572 554572 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 554668 554668 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.055%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold156 SAMTools SNP 554671 554671 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold156 SAMTools SNP 555531 555531 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C191:72 scaffold156 SAMTools SNP 555561 555561 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold156 SAMTools SNP 555564 555564 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold156 SAMTools SNP 555737 555737 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold156 SAMTools SNP 557660 557660 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold156 SAMTools SNP 557687 557687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 558003 558003 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C0.36%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold156 SAMTools SNP 558014 558014 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold156 SAMTools SNP 558625 558625 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold156 SAMTools SNP 559119 559119 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold156 SAMTools SNP 559515 559515 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold156 SAMTools SNP 559900 559900 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 559909 559909 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 560424 560424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 560460 560460 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.25%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold156 SAMTools SNP 560768 560768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold156 SAMTools SNP 561289 561289 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold156 SAMTools SNP 562274 562274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold156 SAMTools SNP 562425 562425 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold156 SAMTools SNP 562470 562470 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 563811 563811 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 563830 563830 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 564148 564148 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 564154 564154 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 564216 564216 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 564415 564415 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 564430 564430 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 564475 564475 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold156 SAMTools SNP 564819 564819 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold156 SAMTools SNP 564834 564834 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold156 SAMTools SNP 564861 564861 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold156 SAMTools SNP 565212 565212 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold156 SAMTools SNP 565696 565696 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold156 SAMTools SNP 565760 565760 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 567083 567083 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0046%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C224:28 scaffold156 SAMTools SNP 567539 567539 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold156 SAMTools SNP 567542 567542 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold156 SAMTools SNP 568310 568310 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 568472 568472 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold156 SAMTools SNP 569476 569476 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold156 SAMTools SNP 569834 569834 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold156 SAMTools SNP 569861 569861 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold156 SAMTools SNP 571402 571402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 571422 571422 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 571696 571696 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold156 SAMTools SNP 571714 571714 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold156 SAMTools SNP 573113 573113 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold156 SAMTools SNP 573167 573167 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.032%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C217:99 scaffold156 SAMTools SNP 585754 585754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 586327 586327 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C216:99 scaffold156 SAMTools SNP 587975 587975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 588300 588300 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 588336 588336 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C3%2C16%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.38%2C9.9e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold156 SAMTools SNP 588433 588433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold156 SAMTools SNP 589678 589678 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold156 SAMTools SNP 590131 590131 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold156 SAMTools SNP 590380 590380 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C57%2C0:99 scaffold156 SAMTools SNP 591348 591348 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C117%2C0:99 scaffold156 SAMTools SNP 593288 593288 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.014%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold156 SAMTools SNP 593677 593677 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C2%2C18%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C7.2e-24%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold156 SAMTools SNP 593920 593920 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C14%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.55%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold156 SAMTools SNP 594335 594335 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C63%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold156 SAMTools SNP 595080 595080 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C39%2C2%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.14%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold156 SAMTools SNP 595547 595547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 595580 595580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold156 SAMTools SNP 596277 596277 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C38%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 596367 596367 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C2%2C6%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.0026%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold156 SAMTools SNP 596721 596721 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.57%2C9.2e-05%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold156 SAMTools SNP 597982 597982 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold156 SAMTools SNP 598586 598586 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 598589 598589 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 598748 598748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C57%2C19%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C6.7e-34%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 599412 599412 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C11%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1.9e-05%2C0.043%2C1%2C3.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold156 SAMTools SNP 599460 599460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C36%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold156 SAMTools SNP 600365 600365 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold156 SAMTools SNP 601254 601254 15.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold156 SAMTools SNP 602071 602071 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C4.7e-21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C192:48 scaffold156 SAMTools SNP 608043 608043 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C28%2C25%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.0083%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 608055 608055 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C38%2C29%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 608290 608290 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C33%2C43%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 608600 608600 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C72%2C0:99 scaffold156 SAMTools SNP 630039 630039 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold156 SAMTools SNP 653030 653030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C13%2C14%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 653060 653060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 653348 653348 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C75%2C56%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C2.4e-07%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 653676 653676 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C279%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 654337 654337 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C7.4e-09%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 654385 654385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold156 SAMTools SNP 654686 654686 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C1%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold156 SAMTools SNP 654710 654710 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.16%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold156 SAMTools SNP 654860 654860 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C24%2C8%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold156 SAMTools SNP 654950 654950 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C32%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 655712 655712 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C3%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.052%2C7.7e-09%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold156 SAMTools SNP 655766 655766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold156 SAMTools SNP 656226 656226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold156 SAMTools SNP 657752 657752 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold156 SAMTools SNP 657786 657786 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.37%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold156 SAMTools SNP 657797 657797 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold156 SAMTools SNP 658023 658023 127 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold156 SAMTools SNP 658460 658460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C73%2C4%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D4.6e-06%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold156 SAMTools SNP 658472 658472 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C5%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold156 SAMTools SNP 658546 658546 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold156 SAMTools SNP 658991 658991 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C16%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold156 SAMTools SNP 659012 659012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C8%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold156 SAMTools SNP 659030 659030 58.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold156 SAMTools SNP 659054 659054 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold156 SAMTools SNP 662669 662669 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold156 SAMTools SNP 662975 662975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C86%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 663020 663020 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C1%2C27%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0078%2C1%2C1%2C6.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold156 SAMTools SNP 664387 664387 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C4%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0094%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold156 SAMTools SNP 664665 664665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold156 SAMTools SNP 664832 664832 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold156 SAMTools SNP 664856 664856 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold156 SAMTools SNP 664883 664883 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C17%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C70:73 scaffold156 SAMTools SNP 664893 664893 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 668822 668822 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D23.2%3BPV4%3D1%2C2.1e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C51:53 scaffold156 SAMTools SNP 669973 669973 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C32%2C9%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.3%2C1.3e-56%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold156 SAMTools SNP 670006 670006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C24%2C18%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.049%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold156 SAMTools SNP 672251 672251 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold156 SAMTools SNP 672290 672290 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold156 SAMTools SNP 672332 672332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 672634 672634 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 673220 673220 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold156 SAMTools SNP 673256 673256 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 673681 673681 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 673954 673954 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold156 SAMTools SNP 673960 673960 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold156 SAMTools SNP 674147 674147 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold156 SAMTools SNP 674168 674168 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 674177 674177 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold156 SAMTools SNP 674360 674360 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C15:18 scaffold156 SAMTools SNP 674366 674366 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold156 SAMTools SNP 674842 674842 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 675422 675422 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 675440 675440 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 679263 679263 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 679264 679264 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 679331 679331 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 679790 679790 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold156 SAMTools SNP 679805 679805 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold156 SAMTools SNP 680092 680092 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold156 SAMTools SNP 680126 680126 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 696317 696317 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 704549 704549 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 722932 722932 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold156 SAMTools SNP 742474 742474 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C174:43 scaffold156 SAMTools SNP 783151 783151 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D42%3BFQ%3D33%3BPV4%3D0.54%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C181:63 scaffold156 SAMTools SNP 792265 792265 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold156 SAMTools SNP 796128 796128 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C111:77 scaffold156 SAMTools SNP 796137 796137 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold156 SAMTools SNP 797063 797063 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold156 SAMTools SNP 797111 797111 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 801518 801518 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C48%2C0:92 scaffold156 SAMTools SNP 801985 801985 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold156 SAMTools SNP 802094 802094 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold156 SAMTools SNP 807352 807352 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold156 SAMTools SNP 813960 813960 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold156 SAMTools SNP 816173 816173 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C8%2C8%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.015%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold156 SAMTools SNP 816192 816192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold156 SAMTools SNP 818822 818822 95.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold156 SAMTools SNP 819499 819499 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold156 SAMTools SNP 819519 819519 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold156 SAMTools SNP 819538 819538 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold156 SAMTools SNP 820139 820139 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold156 SAMTools SNP 820330 820330 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.021%2C0.0001%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold156 SAMTools SNP 821093 821093 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 821276 821276 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold156 SAMTools SNP 840029 840029 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold156 SAMTools SNP 848127 848127 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold156 SAMTools SNP 855813 855813 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C36%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.53%2C3.2e-50%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold156 SAMTools SNP 857615 857615 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.39%2C4.8e-12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold156 SAMTools SNP 860199 860199 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 860611 860611 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold156 SAMTools SNP 861592 861592 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 862281 862281 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 862326 862326 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold156 SAMTools SNP 862792 862792 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 862842 862842 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold156 SAMTools SNP 863285 863285 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold156 SAMTools SNP 894756 894756 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 897183 897183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold156 SAMTools SNP 897187 897187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C61%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold156 SAMTools SNP 897298 897298 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 899771 899771 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 899781 899781 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 900698 900698 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1.3e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C241:99 scaffold156 SAMTools SNP 900737 900737 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00021%2C9.1e-10%2C1%2C3.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold156 SAMTools SNP 900896 900896 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C45%2C0:87 scaffold156 SAMTools SNP 901015 901015 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold156 SAMTools SNP 910702 910702 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 910704 910704 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold156 SAMTools SNP 911130 911130 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold156 SAMTools SNP 911154 911154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold156 SAMTools SNP 911430 911430 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C19%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold156 SAMTools SNP 911481 911481 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.013%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold156 SAMTools SNP 911532 911532 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold156 SAMTools SNP 911955 911955 79 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C143%2C213%2C0%2C201:45 scaffold156 SAMTools SNP 911991 911991 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 912922 912922 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C37:40 scaffold156 SAMTools SNP 914633 914633 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C205:73 scaffold156 SAMTools SNP 920569 920569 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.012%2C3.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold156 SAMTools SNP 920608 920608 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D258%2C19%2C146%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 921177 921177 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C26%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.42%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold156 SAMTools SNP 921183 921183 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C0%2C17%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0026%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold156 SAMTools SNP 921243 921243 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold156 SAMTools SNP 921278 921278 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold156 SAMTools SNP 921318 921318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C23%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold156 SAMTools SNP 922749 922749 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold156 SAMTools SNP 922761 922761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold156 SAMTools SNP 922815 922815 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D42%2C28%2C8%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 923170 923170 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C27%2C14%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold156 SAMTools SNP 923210 923210 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold156 SAMTools SNP 923318 923318 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C64%2C19%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 924404 924404 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C42%2C79%2C41%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.89%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 924416 924416 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C39%2C81%2C41%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.89%2C1%2C0.36%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 925763 925763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C72%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 926131 926131 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 926176 926176 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C0%2C20%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.52%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold156 SAMTools SNP 926221 926221 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold156 SAMTools SNP 926653 926653 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 926725 926725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold156 SAMTools SNP 927167 927167 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D25%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.56%2C0.0081%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold156 SAMTools SNP 928430 928430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold156 SAMTools SNP 928460 928460 157 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C47%2C29%2C180%2C0%2C177:33 scaffold156 SAMTools SNP 928490 928490 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold156 SAMTools SNP 928825 928825 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold156 SAMTools SNP 928871 928871 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold156 SAMTools SNP 928909 928909 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C54%2C0:99 scaffold156 SAMTools SNP 929413 929413 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C75%2C0:99 scaffold156 SAMTools SNP 929797 929797 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold156 SAMTools SNP 929818 929818 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold156 SAMTools SNP 929932 929932 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1.8e-05%2C0.37%2C1%2C5.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold156 SAMTools SNP 929945 929945 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.11%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold156 SAMTools SNP 929966 929966 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C83%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D5.5e-18%2C1%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C87:90 scaffold156 SAMTools SNP 931015 931015 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C12%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.25%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 933256 933256 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C24:28 scaffold156 SAMTools SNP 933267 933267 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold156 SAMTools SNP 933295 933295 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold156 SAMTools SNP 944669 944669 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold156 SAMTools SNP 945586 945586 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.001%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold156 SAMTools SNP 954375 954375 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold156 SAMTools SNP 955164 955164 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 955176 955176 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 955206 955206 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold156 SAMTools SNP 955722 955722 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.47%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C159:99 scaffold156 SAMTools SNP 955779 955779 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold156 SAMTools SNP 956155 956155 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold156 SAMTools SNP 956198 956198 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C0.052%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold156 SAMTools SNP 956593 956593 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold156 SAMTools SNP 956904 956904 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold156 SAMTools SNP 956943 956943 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold156 SAMTools SNP 956967 956967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold156 SAMTools SNP 957268 957268 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 957301 957301 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 957628 957628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C34%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D7.6e-13%2C0.25%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold156 SAMTools SNP 957706 957706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold156 SAMTools SNP 957952 957952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C36%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold156 SAMTools SNP 958391 958391 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 958717 958717 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold156 SAMTools SNP 958735 958735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold156 SAMTools SNP 958975 958975 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold156 SAMTools SNP 959522 959522 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold156 SAMTools SNP 960093 960093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold156 SAMTools SNP 960494 960494 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.1%2C0.041%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C239:99 scaffold156 SAMTools SNP 960505 960505 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C195:99 scaffold156 SAMTools SNP 960532 960532 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold156 SAMTools SNP 960640 960640 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 960670 960670 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 960984 960984 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold156 SAMTools SNP 961030 961030 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.029%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C111:36 scaffold156 SAMTools SNP 961071 961071 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C5.9e-06%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C132:64 scaffold156 SAMTools SNP 961591 961591 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold156 SAMTools SNP 961734 961734 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold156 SAMTools SNP 961749 961749 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C241:99 scaffold156 SAMTools SNP 961788 961788 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C243:99 scaffold156 SAMTools SNP 962231 962231 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C24%2C26%2C18%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.84%2C2.4e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold156 SAMTools SNP 962333 962333 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C35%2C0%2C16%3BMQ%3D50%3BFQ%3D36%3BPV4%3D8.8e-07%2C0.041%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold156 SAMTools SNP 962399 962399 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C34%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 996458 996458 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D0.077%2C6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C28%2C0:53 scaffold156 SAMTools SNP 1023680 1023680 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold156 SAMTools SNP 1034611 1034611 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C197:99 scaffold156 SAMTools SNP 1036828 1036828 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C36%2C0:69 scaffold156 SAMTools SNP 1036991 1036991 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C234:99 scaffold156 SAMTools SNP 1036996 1036996 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.55%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C249:48 scaffold156 SAMTools SNP 1037717 1037717 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold156 SAMTools SNP 1037748 1037748 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 1037763 1037763 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold156 SAMTools SNP 1037942 1037942 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold156 SAMTools SNP 1038083 1038083 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C218:99 scaffold156 SAMTools SNP 1038092 1038092 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C209:99 scaffold156 SAMTools SNP 1038750 1038750 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 1038780 1038780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold156 SAMTools SNP 1038786 1038786 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D76.8%3BPV4%3D1%2C0.023%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C110:99 scaffold156 SAMTools SNP 1039778 1039778 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 1039799 1039799 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold156 SAMTools SNP 1040234 1040234 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold156 SAMTools SNP 1040257 1040257 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold156 SAMTools SNP 1040608 1040608 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold156 SAMTools SNP 1040634 1040634 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold156 SAMTools SNP 1043875 1043875 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold156 SAMTools SNP 1044332 1044332 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold156 SAMTools SNP 1044346 1044346 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold156 SAMTools SNP 1044350 1044350 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold156 SAMTools SNP 1044563 1044563 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold156 SAMTools SNP 1044775 1044775 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold156 SAMTools SNP 1044980 1044980 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 1045900 1045900 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold156 SAMTools SNP 1046057 1046057 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold156 SAMTools SNP 1046450 1046450 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.028%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold156 SAMTools SNP 1046756 1046756 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold156 SAMTools SNP 1046985 1046985 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C2.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 1047602 1047602 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold156 SAMTools SNP 1048101 1048101 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C218:51 scaffold156 SAMTools SNP 1069183 1069183 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C24%2C0:45 scaffold156 SAMTools SNP 1070669 1070669 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold156 SAMTools SNP 1070684 1070684 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold156 SAMTools SNP 1071121 1071121 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C63:66 scaffold156 SAMTools SNP 1071646 1071646 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold156 SAMTools SNP 1071689 1071689 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold156 SAMTools SNP 1075688 1075688 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.063%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold156 SAMTools SNP 1087859 1087859 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold156 SAMTools SNP 1088052 1088052 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.57%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold156 SAMTools SNP 1088089 1088089 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C7%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.037%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C223:99 scaffold156 SAMTools SNP 1088130 1088130 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold156 SAMTools SNP 1088869 1088869 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold156 SAMTools SNP 1088999 1088999 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold156 SAMTools SNP 1089972 1089972 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold156 SAMTools SNP 1091862 1091862 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C126%2C0:99 scaffold156 SAMTools SNP 1093553 1093553 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C27%2C0:51 scaffold156 SAMTools SNP 1094432 1094432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold156 SAMTools SNP 1094518 1094518 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold156 SAMTools SNP 1094872 1094872 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C209%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C255%2C0:99 scaffold156 SAMTools SNP 1095104 1095104 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold156 SAMTools SNP 1095120 1095120 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold156 SAMTools SNP 1129726 1129726 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 1641 1641 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 3320 3320 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1560 SAMTools SNP 3589 3589 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1560 SAMTools SNP 3613 3613 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1560 SAMTools SNP 3640 3640 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1560 SAMTools SNP 3662 3662 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1560 SAMTools SNP 4290 4290 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1560 SAMTools SNP 4305 4305 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.44%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1560 SAMTools SNP 4706 4706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1560 SAMTools SNP 5671 5671 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.33%2C0.067%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1560 SAMTools SNP 6479 6479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 6533 6533 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1560 SAMTools SNP 6597 6597 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1560 SAMTools SNP 6598 6598 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1560 SAMTools SNP 10828 10828 43.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1560 SAMTools SNP 10890 10890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1560 SAMTools SNP 12474 12474 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1560 SAMTools SNP 12477 12477 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1560 SAMTools SNP 12988 12988 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1560 SAMTools SNP 13035 13035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1560 SAMTools SNP 13066 13066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 13117 13117 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C8%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 13524 13524 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold1560 SAMTools SNP 13538 13538 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1560 SAMTools SNP 14140 14140 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C174:99 scaffold1560 SAMTools SNP 14142 14142 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.4%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C204:99 scaffold1560 SAMTools SNP 14158 14158 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C0.37%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C24%2C0:45 scaffold1560 SAMTools SNP 14173 14173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1560 SAMTools SNP 16958 16958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1560 SAMTools SNP 23269 23269 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1560 SAMTools SNP 23324 23324 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1560 SAMTools SNP 23338 23338 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1560 SAMTools SNP 40983 40983 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 41086 41086 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 41445 41445 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1560 SAMTools SNP 41447 41447 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1560 SAMTools SNP 41605 41605 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1560 SAMTools SNP 43114 43114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 52364 52364 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41.9%3BPV4%3D0.4%2C0.012%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C85:72 scaffold1560 SAMTools SNP 54896 54896 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1560 SAMTools SNP 54961 54961 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1560 SAMTools SNP 58637 58637 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 58661 58661 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C109:99 scaffold1560 SAMTools SNP 60275 60275 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1560 SAMTools SNP 60314 60314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1560 SAMTools SNP 62145 62145 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 62763 62763 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold1560 SAMTools SNP 64549 64549 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1560 SAMTools SNP 64555 64555 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1560 SAMTools SNP 65793 65793 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1560 SAMTools SNP 65797 65797 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1560 SAMTools SNP 69184 69184 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 71643 71643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1560 SAMTools SNP 158171 158171 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1560 SAMTools SNP 158670 158670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1560 SAMTools SNP 158881 158881 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1560 SAMTools SNP 158906 158906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1560 SAMTools SNP 164050 164050 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 164077 164077 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 164937 164937 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C17%2C10%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1560 SAMTools SNP 164978 164978 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C23%2C19%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.062%2C5.4e-47%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1560 SAMTools SNP 165766 165766 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold1560 SAMTools SNP 166151 166151 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C190:99 scaffold1560 SAMTools SNP 166208 166208 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1560 SAMTools SNP 171006 171006 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1560 SAMTools SNP 171214 171214 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1560 SAMTools SNP 173597 173597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1560 SAMTools SNP 173640 173640 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1560 SAMTools SNP 173679 173679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1560 SAMTools SNP 175408 175408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1560 SAMTools SNP 175531 175531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1560 SAMTools SNP 176376 176376 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C0.13%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1560 SAMTools SNP 176377 176377 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1560 SAMTools SNP 176804 176804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C10%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold1560 SAMTools SNP 176841 176841 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.049%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C14:17 scaffold1560 SAMTools SNP 176907 176907 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.54%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1560 SAMTools SNP 177269 177269 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1560 SAMTools SNP 177926 177926 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.57%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1560 SAMTools SNP 178100 178100 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C33%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0063%2C4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1560 SAMTools SNP 178169 178169 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1560 SAMTools SNP 178191 178191 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1560 SAMTools SNP 180175 180175 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1560 SAMTools SNP 180181 180181 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1560 SAMTools SNP 182135 182135 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1560 SAMTools SNP 184072 184072 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1560 SAMTools SNP 184078 184078 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C2%2C5%3BMQ%3D48%3BFQ%3D159%3BPV4%3D0.58%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1560 SAMTools SNP 184841 184841 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1560 SAMTools SNP 187237 187237 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1560 SAMTools SNP 187291 187291 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1560 SAMTools SNP 187774 187774 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C25%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 187795 187795 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C60%2C22%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 187807 187807 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C22%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 188258 188258 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 191497 191497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C6%2C55%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C5.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 191563 191563 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1560 SAMTools SNP 192800 192800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1560 SAMTools SNP 200852 200852 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1560 SAMTools SNP 201002 201002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 208430 208430 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold1560 SAMTools SNP 208495 208495 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold1560 SAMTools SNP 209367 209367 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 209372 209372 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1560 SAMTools SNP 209412 209412 38.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1560 SAMTools SNP 209523 209523 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.022%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1560 SAMTools SNP 209793 209793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1560 SAMTools SNP 209841 209841 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C16%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.09%2C3.3e-30%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1560 SAMTools SNP 209955 209955 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1560 SAMTools SNP 210683 210683 23.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1560 SAMTools SNP 212222 212222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1560 SAMTools SNP 212327 212327 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1560 SAMTools SNP 216800 216800 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1560 SAMTools SNP 217164 217164 30.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C5%3BMQ%3D45%3BFQ%3D-10.4%3BPV4%3D1%2C2e-09%2C0.33%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C17:20 scaffold1560 SAMTools SNP 217540 217540 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.8e-16%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C175:48 scaffold1560 SAMTools SNP 221871 221871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1560 SAMTools SNP 221924 221924 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1560 SAMTools SNP 222074 222074 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1560 SAMTools SNP 223108 223108 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1560 SAMTools SNP 224049 224049 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1560 SAMTools SNP 224069 224069 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1560 SAMTools SNP 224412 224412 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1560 SAMTools SNP 224430 224430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1560 SAMTools SNP 227305 227305 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold1560 SAMTools SNP 227316 227316 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1561 SAMTools SNP 6271 6271 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1561 SAMTools SNP 9324 9324 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D0.4%2C0.3%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold1561 SAMTools SNP 9624 9624 152 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C135%2C0:99 scaffold1561 SAMTools SNP 30383 30383 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1561 SAMTools SNP 35031 35031 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1561 SAMTools SNP 36825 36825 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1561 SAMTools SNP 37159 37159 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1561 SAMTools SNP 37453 37453 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1561 SAMTools SNP 37454 37454 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1561 SAMTools SNP 38331 38331 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1561 SAMTools SNP 38339 38339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1561 SAMTools SNP 38378 38378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1561 SAMTools SNP 39227 39227 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C35:38 scaffold1561 SAMTools SNP 67344 67344 30.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1561 SAMTools SNP 68172 68172 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C33%2C0:59 scaffold1561 SAMTools SNP 71145 71145 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C245:99 scaffold1561 SAMTools SNP 71223 71223 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1561 SAMTools SNP 71434 71434 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1561 SAMTools SNP 72564 72564 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C39%2C0:75 scaffold1561 SAMTools SNP 73046 73046 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1561 SAMTools SNP 74863 74863 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C18%2C0:33 scaffold1561 SAMTools SNP 74914 74914 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.3e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold1561 SAMTools SNP 74944 74944 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1561 SAMTools SNP 74947 74947 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D51.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C83:81 scaffold1561 SAMTools SNP 76914 76914 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1561 SAMTools SNP 77178 77178 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1561 SAMTools SNP 77199 77199 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1561 SAMTools SNP 77245 77245 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1561 SAMTools SNP 77877 77877 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1561 SAMTools SNP 77994 77994 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.34%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1561 SAMTools SNP 78469 78469 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1561 SAMTools SNP 79148 79148 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.001%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1561 SAMTools SNP 81897 81897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.3%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1561 SAMTools SNP 85068 85068 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1561 SAMTools SNP 85185 85185 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.11%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1561 SAMTools SNP 85245 85245 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C0.34%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1561 SAMTools SNP 85311 85311 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1561 SAMTools SNP 86263 86263 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1561 SAMTools SNP 87017 87017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C34%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.086%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1561 SAMTools SNP 87060 87060 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.011%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold1561 SAMTools SNP 90718 90718 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1561 SAMTools SNP 90931 90931 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C146:99 scaffold1561 SAMTools SNP 91005 91005 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1561 SAMTools SNP 91302 91302 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1561 SAMTools SNP 91981 91981 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1561 SAMTools SNP 93432 93432 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1561 SAMTools SNP 103470 103470 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1561 SAMTools SNP 108169 108169 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.13%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1561 SAMTools SNP 108722 108722 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1561 SAMTools SNP 108734 108734 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1561 SAMTools SNP 109047 109047 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1561 SAMTools SNP 110961 110961 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1561 SAMTools SNP 114608 114608 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1561 SAMTools SNP 114612 114612 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1561 SAMTools SNP 114661 114661 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1561 SAMTools SNP 116365 116365 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1561 SAMTools SNP 117910 117910 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1561 SAMTools SNP 122632 122632 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1561 SAMTools SNP 123473 123473 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1561 SAMTools SNP 123772 123772 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C35:38 scaffold1561 SAMTools SNP 126832 126832 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1561 SAMTools SNP 130900 130900 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1562 SAMTools SNP 6984 6984 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C51%2C0:99 scaffold1562 SAMTools SNP 7083 7083 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C51%2C0:99 scaffold1562 SAMTools SNP 7655 7655 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C31%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C144%2C0:99 scaffold1562 SAMTools SNP 57783 57783 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C65%2C6%2C18%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.21%2C1.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1562 SAMTools SNP 58594 58594 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C4%2C21%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.19%2C9.5e-52%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1562 SAMTools SNP 58740 58740 32.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1562 SAMTools SNP 63817 63817 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1562 SAMTools SNP 67145 67145 51 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2.6e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C234:84 scaffold1562 SAMTools SNP 70256 70256 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C48%2C0:93 scaffold1562 SAMTools SNP 73279 73279 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1562 SAMTools SNP 73289 73289 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1562 SAMTools SNP 73870 73870 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-06%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 74768 74768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1562 SAMTools SNP 75320 75320 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1562 SAMTools SNP 75395 75395 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C60%2C1%2C16%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1562 SAMTools SNP 75789 75789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1562 SAMTools SNP 75810 75810 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C60:63 scaffold1562 SAMTools SNP 76316 76316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 77371 77371 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1562 SAMTools SNP 77377 77377 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1562 SAMTools SNP 78701 78701 6.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1562 SAMTools SNP 79102 79102 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1562 SAMTools SNP 80314 80314 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1562 SAMTools SNP 81787 81787 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C5.9e-07%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 81812 81812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.26%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 82072 82072 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C9%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.35%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 82137 82137 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.023%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 82143 82143 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 83516 83516 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C221:99 scaffold1562 SAMTools SNP 83594 83594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 83901 83901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C26%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1562 SAMTools SNP 83936 83936 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C2%2C10%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.29%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1562 SAMTools SNP 83994 83994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1562 SAMTools SNP 84334 84334 69 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C186%2C153%2C239%2C0%2C224:63 scaffold1562 SAMTools SNP 84346 84346 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1562 SAMTools SNP 84571 84571 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.21%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1562 SAMTools SNP 84572 84572 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1562 SAMTools SNP 85476 85476 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C8%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.096%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1562 SAMTools SNP 85836 85836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1562 SAMTools SNP 87028 87028 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1562 SAMTools SNP 87427 87427 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.67%2C0.0095%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1562 SAMTools SNP 87488 87488 221 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.66%2C0.24%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1562 SAMTools SNP 87528 87528 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1562 SAMTools SNP 87578 87578 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1562 SAMTools SNP 87679 87679 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C218:99 scaffold1562 SAMTools SNP 87693 87693 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.35%2C0.34%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1562 SAMTools SNP 87886 87886 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.3%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1562 SAMTools SNP 87908 87908 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1562 SAMTools SNP 89586 89586 179 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C43%2C255%2C0%2C254:57 scaffold1562 SAMTools SNP 92067 92067 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.0025%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1562 SAMTools SNP 92085 92085 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1562 SAMTools SNP 92160 92160 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1562 SAMTools SNP 92166 92166 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1562 SAMTools SNP 92648 92648 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1562 SAMTools SNP 120914 120914 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C27%2C0:51 scaffold1562 SAMTools SNP 129387 129387 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1562 SAMTools SNP 130384 130384 41.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1562 SAMTools SNP 130940 130940 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold1562 SAMTools SNP 131071 131071 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C5.1e-09%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C203:99 scaffold1562 SAMTools SNP 131461 131461 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C45%2C0:87 scaffold1564 SAMTools SNP 8081 8081 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 8092 8092 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 8206 8206 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 8273 8273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 28436 28436 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 28437 28437 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1564 SAMTools SNP 32764 32764 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1564 SAMTools SNP 56934 56934 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1564 SAMTools SNP 57242 57242 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1564 SAMTools SNP 57279 57279 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1564 SAMTools SNP 57280 57280 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1564 SAMTools SNP 57297 57297 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1564 SAMTools SNP 57689 57689 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.036%2C0.034%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C177:57 scaffold1564 SAMTools SNP 58749 58749 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1564 SAMTools SNP 58783 58783 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1564 SAMTools SNP 60682 60682 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1564 SAMTools SNP 61200 61200 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold1564 SAMTools SNP 61313 61313 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C213:66 scaffold1564 SAMTools SNP 61314 61314 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1564 SAMTools SNP 61338 61338 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1564 SAMTools SNP 61788 61788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1564 SAMTools SNP 61809 61809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C3%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1564 SAMTools SNP 61852 61852 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1564 SAMTools SNP 67117 67117 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C39%2C0:75 scaffold1564 SAMTools SNP 67572 67572 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C255%2C0:99 scaffold1564 SAMTools SNP 67801 67801 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1564 SAMTools SNP 67846 67846 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C20%2C44%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.13%2C6.7e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1564 SAMTools SNP 67990 67990 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C90%2C0:99 scaffold1564 SAMTools SNP 68344 68344 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C4.9e-11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C152:99 scaffold1564 SAMTools SNP 68866 68866 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C10%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.38%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1564 SAMTools SNP 69296 69296 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1564 SAMTools SNP 71319 71319 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1564 SAMTools SNP 76864 76864 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C238:99 scaffold1564 SAMTools SNP 77029 77029 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1564 SAMTools SNP 77813 77813 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1564 SAMTools SNP 80271 80271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1564 SAMTools SNP 81131 81131 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1564 SAMTools SNP 81882 81882 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold1564 SAMTools SNP 81951 81951 92.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1564 SAMTools SNP 82554 82554 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1564 SAMTools SNP 83725 83725 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1564 SAMTools SNP 84411 84411 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1564 SAMTools SNP 84440 84440 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold1564 SAMTools SNP 84471 84471 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1564 SAMTools SNP 84894 84894 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1564 SAMTools SNP 84897 84897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1564 SAMTools SNP 84939 84939 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1564 SAMTools SNP 85911 85911 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1564 SAMTools SNP 97912 97912 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1564 SAMTools SNP 97914 97914 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1564 SAMTools SNP 98738 98738 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C38:41 scaffold1564 SAMTools SNP 98813 98813 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C5%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.71%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1564 SAMTools SNP 100675 100675 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C4%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.0069%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1564 SAMTools SNP 116693 116693 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1564 SAMTools SNP 119240 119240 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1564 SAMTools SNP 119258 119258 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C135:99 scaffold1567 SAMTools SNP 3429 3429 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1567 SAMTools SNP 3462 3462 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1567 SAMTools SNP 3846 3846 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1567 SAMTools SNP 3885 3885 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.52%3BPV4%3D1%2C0.13%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C66:37 scaffold1567 SAMTools SNP 3890 3890 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.52%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C66:37 scaffold1567 SAMTools SNP 6652 6652 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.37%2C0.11%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C214:99 scaffold1567 SAMTools SNP 7118 7118 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C38%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.13%2C0.0043%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C231:99 scaffold1567 SAMTools SNP 7150 7150 32.8 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C35%2C29%2C66%2C0%2C60:10 scaffold1567 SAMTools SNP 7538 7538 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1567 SAMTools SNP 8041 8041 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1567 SAMTools SNP 8059 8059 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1567 SAMTools SNP 8095 8095 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1567 SAMTools SNP 8104 8104 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1567 SAMTools SNP 9865 9865 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D43%3BPV4%3D1%2C0.12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C70:73 scaffold1567 SAMTools SNP 9907 9907 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1567 SAMTools SNP 9913 9913 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D48%3BFQ%3D87%3BPV4%3D0.58%2C0.35%2C0.1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C229:99 scaffold1567 SAMTools SNP 10013 10013 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1567 SAMTools SNP 10088 10088 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C79:78 scaffold1567 SAMTools SNP 10714 10714 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1567 SAMTools SNP 10978 10978 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.081%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C158:96 scaffold1567 SAMTools SNP 12523 12523 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1567 SAMTools SNP 13508 13508 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold1567 SAMTools SNP 13516 13516 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C21%2C0:39 scaffold1567 SAMTools SNP 14529 14529 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C1%2C1%2C3.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1567 SAMTools SNP 14553 14553 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.3%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold1567 SAMTools SNP 15452 15452 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1567 SAMTools SNP 15930 15930 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1567 SAMTools SNP 16337 16337 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1567 SAMTools SNP 18724 18724 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1567 SAMTools SNP 36761 36761 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1567 SAMTools SNP 36812 36812 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1567 SAMTools SNP 38373 38373 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1567 SAMTools SNP 39579 39579 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1567 SAMTools SNP 65996 65996 73.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold1569 SAMTools SNP 18537 18537 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 18575 18575 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1569 SAMTools SNP 18890 18890 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 19650 19650 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1569 SAMTools SNP 21241 21241 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1569 SAMTools SNP 22747 22747 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C238:99 scaffold1569 SAMTools SNP 22981 22981 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0027%2C0.25%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1569 SAMTools SNP 23221 23221 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1569 SAMTools SNP 23258 23258 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C5%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00045%2C0.3%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1569 SAMTools SNP 23843 23843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1569 SAMTools SNP 24071 24071 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1569 SAMTools SNP 24143 24143 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 24382 24382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D48%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1569 SAMTools SNP 25280 25280 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D47%3BFQ%3D151%3BPV4%3D1%2C0.12%2C0.1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C180:99 scaffold1569 SAMTools SNP 29716 29716 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D284%2C14%2C63%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1569 SAMTools SNP 29725 29725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C298%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 29743 29743 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C17%2C236%2C60%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1569 SAMTools SNP 30497 30497 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C45%2C0%2C20%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00056%2C0.00029%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1569 SAMTools SNP 30588 30588 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C30%2C60%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 30800 30800 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C77%2C18%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 30818 30818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C70%2C14%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C4.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 30957 30957 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 30975 30975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C28%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.00035%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 31596 31596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C46%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1569 SAMTools SNP 31614 31614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1569 SAMTools SNP 31629 31629 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1569 SAMTools SNP 33325 33325 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C82%2C7%2C39%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.0088%2C1%2C0.029%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1569 SAMTools SNP 33348 33348 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C47%2C9%2C26%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.064%2C0.12%2C0.2%2C1.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 33391 33391 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C53%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 33852 33852 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C80%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1569 SAMTools SNP 42906 42906 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 42940 42940 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 45467 45467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.02%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 45471 45471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.095%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 46307 46307 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 47325 47325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1569 SAMTools SNP 47412 47412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1569 SAMTools SNP 47647 47647 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 48063 48063 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1569 SAMTools SNP 48446 48446 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.49%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1569 SAMTools SNP 48670 48670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.23%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 48693 48693 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C29%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1569 SAMTools SNP 48993 48993 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.053%2C0.0004%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1569 SAMTools SNP 52964 52964 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 56500 56500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1569 SAMTools SNP 62163 62163 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1569 SAMTools SNP 62603 62603 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1569 SAMTools SNP 62733 62733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 62975 62975 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1569 SAMTools SNP 64695 64695 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1569 SAMTools SNP 67354 67354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1569 SAMTools SNP 67357 67357 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C21%2C0:39 scaffold1569 SAMTools SNP 68143 68143 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C73%2C336%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 68461 68461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C35%2C268%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 70574 70574 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5007%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.43%3BPV4%3D1%2C0.089%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C24:27 scaffold1569 SAMTools SNP 71097 71097 51.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1569 SAMTools SNP 71120 71120 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.49%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C223:99 scaffold1569 SAMTools SNP 71150 71150 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 71386 71386 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C126%2C17%2C17%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00017%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1569 SAMTools SNP 71802 71802 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 73215 73215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 73231 73231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C27%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 73335 73335 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C73%2C0%2C18%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C0.00024%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1569 SAMTools SNP 73577 73577 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C60%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1569 SAMTools SNP 73596 73596 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C13%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1569 SAMTools SNP 73641 73641 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1569 SAMTools SNP 74353 74353 44.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1569 SAMTools SNP 75044 75044 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C255%2C0:99 scaffold1569 SAMTools SNP 75399 75399 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1569 SAMTools SNP 79652 79652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 79667 79667 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 79937 79937 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1569 SAMTools SNP 80145 80145 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1569 SAMTools SNP 80214 80214 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1569 SAMTools SNP 80501 80501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 80758 80758 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 80965 80965 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1569 SAMTools SNP 81019 81019 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1569 SAMTools SNP 82263 82263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1569 SAMTools SNP 82317 82317 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1569 SAMTools SNP 82380 82380 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1569 SAMTools SNP 82872 82872 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1569 SAMTools SNP 82920 82920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.029%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 83258 83258 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 83481 83481 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.14%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1569 SAMTools SNP 83514 83514 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C241:99 scaffold1569 SAMTools SNP 83863 83863 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 84392 84392 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1569 SAMTools SNP 85364 85364 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C229:99 scaffold1569 SAMTools SNP 85373 85373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1569 SAMTools SNP 85909 85909 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1569 SAMTools SNP 86441 86441 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C241:91 scaffold1569 SAMTools SNP 86465 86465 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C7.7e-05%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C222:34 scaffold1569 SAMTools SNP 88734 88734 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1569 SAMTools SNP 88965 88965 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.32%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1569 SAMTools SNP 88986 88986 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1569 SAMTools SNP 89240 89240 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1569 SAMTools SNP 89393 89393 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1569 SAMTools SNP 89736 89736 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1569 SAMTools SNP 90832 90832 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1569 SAMTools SNP 91700 91700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.48%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold1569 SAMTools SNP 94079 94079 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 94080 94080 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 94836 94836 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1569 SAMTools SNP 94840 94840 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1569 SAMTools SNP 96490 96490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C37%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1569 SAMTools SNP 97486 97486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 109564 109564 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1569 SAMTools SNP 110074 110074 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold1569 SAMTools SNP 110221 110221 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1569 SAMTools SNP 110752 110752 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C19%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C4.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C215:87 scaffold1569 SAMTools SNP 115270 115270 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C255%2C0:99 scaffold1569 SAMTools SNP 115414 115414 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 117770 117770 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1569 SAMTools SNP 121585 121585 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C9.7e-39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C240:72 scaffold1569 SAMTools SNP 122051 122051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C22%2C74%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 122090 122090 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C63%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 122129 122129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C81%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1.3e-11%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 122282 122282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 122351 122351 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 122366 122366 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.28%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1569 SAMTools SNP 122894 122894 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold1569 SAMTools SNP 123388 123388 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.59%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1569 SAMTools SNP 123861 123861 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1569 SAMTools SNP 124257 124257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1569 SAMTools SNP 124548 124548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.26%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold1569 SAMTools SNP 124550 124550 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1569 SAMTools SNP 124551 124551 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1569 SAMTools SNP 124563 124563 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C71:37 scaffold1569 SAMTools SNP 124644 124644 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1569 SAMTools SNP 124646 124646 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1569 SAMTools SNP 126143 126143 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 126149 126149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 126170 126170 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1569 SAMTools SNP 126191 126191 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.24%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C247:67 scaffold1569 SAMTools SNP 126483 126483 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1569 SAMTools SNP 126596 126596 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.61%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1569 SAMTools SNP 126597 126597 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.61%2C0.47%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1569 SAMTools SNP 126810 126810 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1569 SAMTools SNP 126966 126966 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C0.026%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1569 SAMTools SNP 127139 127139 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1569 SAMTools SNP 127317 127317 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1569 SAMTools SNP 127320 127320 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1569 SAMTools SNP 127947 127947 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1569 SAMTools SNP 128453 128453 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1569 SAMTools SNP 129073 129073 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.072%2C0.08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1569 SAMTools SNP 129166 129166 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 129417 129417 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1569 SAMTools SNP 129515 129515 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C4%2C36%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.1e-05%2C1%2C9.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1569 SAMTools SNP 129924 129924 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C92%2C39%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C7.8e-78%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 129963 129963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C61%2C44%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 131781 131781 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C40%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.003%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 132011 132011 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 132500 132500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C6%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 133021 133021 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 133335 133335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 134212 134212 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1569 SAMTools SNP 134548 134548 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C76%2C18%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D2.6e-09%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1569 SAMTools SNP 134878 134878 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C50%2C20%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1.3e-07%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1569 SAMTools SNP 134905 134905 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C42%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1569 SAMTools SNP 135122 135122 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 135521 135521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C24%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0001%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1569 SAMTools SNP 136270 136270 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1569 SAMTools SNP 136285 136285 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1569 SAMTools SNP 136303 136303 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C11%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1569 SAMTools SNP 136658 136658 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C15%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 140046 140046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1569 SAMTools SNP 140091 140091 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1569 SAMTools SNP 140175 140175 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1569 SAMTools SNP 141147 141147 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold1569 SAMTools SNP 141863 141863 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1569 SAMTools SNP 144256 144256 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1569 SAMTools SNP 144353 144353 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1569 SAMTools SNP 145633 145633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1569 SAMTools SNP 145678 145678 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.47%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1569 SAMTools SNP 145679 145679 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1569 SAMTools SNP 145680 145680 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 145692 145692 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 151703 151703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 154165 154165 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1569 SAMTools SNP 154178 154178 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1569 SAMTools SNP 154186 154186 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.051%2C0.11%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1569 SAMTools SNP 154619 154619 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C70%2C21%3BMQ%3D50%3BFQ%3D-271%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1569 SAMTools SNP 158642 158642 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1569 SAMTools SNP 158766 158766 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1569 SAMTools SNP 158817 158817 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1569 SAMTools SNP 159375 159375 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1569 SAMTools SNP 160500 160500 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1569 SAMTools SNP 160558 160558 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.46%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C184:59 scaffold1569 SAMTools SNP 160971 160971 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1569 SAMTools SNP 164281 164281 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 164317 164317 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1569 SAMTools SNP 164757 164757 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C137:99 scaffold1569 SAMTools SNP 165212 165212 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1569 SAMTools SNP 165428 165428 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1569 SAMTools SNP 165454 165454 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1569 SAMTools SNP 165463 165463 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold1569 SAMTools SNP 166232 166232 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 166241 166241 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1569 SAMTools SNP 166874 166874 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1569 SAMTools SNP 167103 167103 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1569 SAMTools SNP 167209 167209 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 167914 167914 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1569 SAMTools SNP 169006 169006 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 170318 170318 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1569 SAMTools SNP 170383 170383 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1569 SAMTools SNP 170386 170386 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1569 SAMTools SNP 170405 170405 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 170407 170407 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1569 SAMTools SNP 176436 176436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 183897 183897 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1569 SAMTools SNP 185950 185950 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1569 SAMTools SNP 189728 189728 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.14%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C148:79 scaffold1569 SAMTools SNP 196319 196319 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1569 SAMTools SNP 197803 197803 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1569 SAMTools SNP 204209 204209 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1569 SAMTools SNP 209347 209347 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C143:74 scaffold1569 SAMTools SNP 209358 209358 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1569 SAMTools SNP 209360 209360 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1569 SAMTools SNP 211292 211292 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.2%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C132:99 scaffold1569 SAMTools SNP 211570 211570 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.011%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1569 SAMTools SNP 212945 212945 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 213030 213030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 213922 213922 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 213955 213955 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.3%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1569 SAMTools SNP 214374 214374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1569 SAMTools SNP 214396 214396 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1569 SAMTools SNP 214459 214459 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.25%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1569 SAMTools SNP 214461 214461 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1569 SAMTools SNP 214998 214998 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1569 SAMTools SNP 215045 215045 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1569 SAMTools SNP 215238 215238 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1569 SAMTools SNP 215325 215325 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 215358 215358 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1569 SAMTools SNP 215364 215364 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1569 SAMTools SNP 215385 215385 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1569 SAMTools SNP 215979 215979 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 215983 215983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 216277 216277 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1569 SAMTools SNP 216326 216326 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 216464 216464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1569 SAMTools SNP 216842 216842 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold1569 SAMTools SNP 216869 216869 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C237:99 scaffold1569 SAMTools SNP 216884 216884 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1569 SAMTools SNP 217354 217354 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C48%2C0:93 scaffold1569 SAMTools SNP 218460 218460 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.32%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1569 SAMTools SNP 218477 218477 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.00097%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold1569 SAMTools SNP 219052 219052 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C3%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.019%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1569 SAMTools SNP 219244 219244 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.11%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1569 SAMTools SNP 220174 220174 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1569 SAMTools SNP 220612 220612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C30%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 220621 220621 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1569 SAMTools SNP 220658 220658 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1569 SAMTools SNP 220677 220677 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C17%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1569 SAMTools SNP 222107 222107 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C31%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C245:99 scaffold1569 SAMTools SNP 235263 235263 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1569 SAMTools SNP 262783 262783 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.12%2C2.5e-12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1569 SAMTools SNP 265105 265105 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C169:59 scaffold1569 SAMTools SNP 265322 265322 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.14%2C3.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C107:36 scaffold157 SAMTools SNP 23945 23945 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.055%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold157 SAMTools SNP 26055 26055 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold157 SAMTools SNP 26160 26160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold157 SAMTools SNP 35087 35087 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold157 SAMTools SNP 36263 36263 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 36618 36618 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 41204 41204 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 41216 41216 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 44144 44144 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C144%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 44325 44325 75 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C37%2C10%2C91%2C0%2C88:51 scaffold157 SAMTools SNP 48391 48391 44.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold157 SAMTools SNP 48487 48487 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold157 SAMTools SNP 48658 48658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold157 SAMTools SNP 48772 48772 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 48900 48900 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 48910 48910 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 48955 48955 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold157 SAMTools SNP 49366 49366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C63%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold157 SAMTools SNP 49378 49378 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C65%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold157 SAMTools SNP 49623 49623 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold157 SAMTools SNP 50168 50168 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00074%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold157 SAMTools SNP 50180 50180 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold157 SAMTools SNP 50267 50267 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 50279 50279 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C181:74 scaffold157 SAMTools SNP 51540 51540 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C2%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 51633 51633 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C4%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.013%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 52060 52060 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C149%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 52093 52093 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C170%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 53154 53154 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C30%2C0:57 scaffold157 SAMTools SNP 54719 54719 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold157 SAMTools SNP 54929 54929 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold157 SAMTools SNP 56064 56064 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold157 SAMTools SNP 56641 56641 40.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold157 SAMTools SNP 57300 57300 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0:63 scaffold157 SAMTools SNP 57340 57340 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold157 SAMTools SNP 57464 57464 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 57714 57714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C27%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold157 SAMTools SNP 58438 58438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 58440 58440 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 58748 58748 77.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold157 SAMTools SNP 58997 58997 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold157 SAMTools SNP 61347 61347 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold157 SAMTools SNP 61358 61358 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 61696 61696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold157 SAMTools SNP 66473 66473 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold157 SAMTools SNP 66870 66870 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold157 SAMTools SNP 66879 66879 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold157 SAMTools SNP 66918 66918 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 68650 68650 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold157 SAMTools SNP 68673 68673 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold157 SAMTools SNP 80354 80354 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 82919 82919 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.11%2C3e-06%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C208:36 scaffold157 SAMTools SNP 83323 83323 52.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold157 SAMTools SNP 83604 83604 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold157 SAMTools SNP 93101 93101 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold157 SAMTools SNP 95219 95219 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 96774 96774 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold157 SAMTools SNP 97568 97568 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold157 SAMTools SNP 99714 99714 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C13%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.18%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold157 SAMTools SNP 99838 99838 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.65%2C2.8e-14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold157 SAMTools SNP 99850 99850 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C11%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.36%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold157 SAMTools SNP 99933 99933 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold157 SAMTools SNP 102638 102638 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1e-10%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C99:36 scaffold157 SAMTools SNP 103444 103444 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C14:17 scaffold157 SAMTools SNP 104455 104455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 104467 104467 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 105096 105096 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.23%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold157 SAMTools SNP 105602 105602 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.0013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold157 SAMTools SNP 107077 107077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C5.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 110325 110325 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.089%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold157 SAMTools SNP 113887 113887 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 115003 115003 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 119379 119379 34.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold157 SAMTools SNP 119452 119452 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 119509 119509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 123199 123199 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold157 SAMTools SNP 123248 123248 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C30%2C0:57 scaffold157 SAMTools SNP 123729 123729 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D0%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C117%2C0:87 scaffold157 SAMTools SNP 130042 130042 7.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D1%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C102%2C0:54 scaffold157 SAMTools SNP 133177 133177 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C33%2C0:63 scaffold157 SAMTools SNP 143013 143013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 143742 143742 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C10%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C226%2C0:99 scaffold157 SAMTools SNP 144441 144441 39.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold157 SAMTools SNP 144603 144603 26.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold157 SAMTools SNP 147362 147362 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.00022%2C1%2C1%2C7.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold157 SAMTools SNP 147376 147376 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold157 SAMTools SNP 147392 147392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold157 SAMTools SNP 148115 148115 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C37%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold157 SAMTools SNP 148354 148354 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1.3e-17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold157 SAMTools SNP 148667 148667 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold157 SAMTools SNP 148877 148877 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C14%2C24%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.81%2C4.7e-48%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold157 SAMTools SNP 153338 153338 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold157 SAMTools SNP 153571 153571 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold157 SAMTools SNP 157791 157791 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D46.8%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C80:77 scaffold157 SAMTools SNP 160785 160785 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold157 SAMTools SNP 161315 161315 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold157 SAMTools SNP 161351 161351 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold157 SAMTools SNP 161936 161936 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold157 SAMTools SNP 161954 161954 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold157 SAMTools SNP 162248 162248 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 162251 162251 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 162517 162517 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold157 SAMTools SNP 162842 162842 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold157 SAMTools SNP 162877 162877 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C0.36%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold157 SAMTools SNP 163596 163596 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.12%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold157 SAMTools SNP 163605 163605 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C0.043%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold157 SAMTools SNP 163881 163881 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold157 SAMTools SNP 163917 163917 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold157 SAMTools SNP 164252 164252 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold157 SAMTools SNP 164417 164417 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold157 SAMTools SNP 164593 164593 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold157 SAMTools SNP 165576 165576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold157 SAMTools SNP 168394 168394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C10%3BMQ%3D49%3BFQ%3D143%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold157 SAMTools SNP 168553 168553 66.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold157 SAMTools SNP 169838 169838 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold157 SAMTools SNP 175364 175364 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.56%2C4.5e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold157 SAMTools SNP 180783 180783 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold157 SAMTools SNP 180827 180827 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.59%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold157 SAMTools SNP 181052 181052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold157 SAMTools SNP 181608 181608 205 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C60%2C0%2C226%2C34%2C223:99 scaffold157 SAMTools SNP 181632 181632 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 183618 183618 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold157 SAMTools SNP 183669 183669 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold157 SAMTools SNP 183687 183687 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 183849 183849 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold157 SAMTools SNP 185718 185718 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 185743 185743 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 186099 186099 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold157 SAMTools SNP 192814 192814 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold157 SAMTools SNP 192875 192875 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold157 SAMTools SNP 194040 194040 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C244:99 scaffold157 SAMTools SNP 194535 194535 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C114%2C0:99 scaffold157 SAMTools SNP 194791 194791 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C9%2C11%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.34%2C1.5e-23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold157 SAMTools SNP 195306 195306 38.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C13%2C7%2C69%2C0%2C66:10 scaffold157 SAMTools SNP 195316 195316 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.29%2C0.22%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C160:75 scaffold157 SAMTools SNP 195363 195363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 195375 195375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 196775 196775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C43%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 197205 197205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold157 SAMTools SNP 198674 198674 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C7%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 198735 198735 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold157 SAMTools SNP 199206 199206 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C11%3BMQ%3D49%3BFQ%3D172%3BPV4%3D1%2C0.19%2C0.16%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold157 SAMTools SNP 201358 201358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C49%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold157 SAMTools SNP 201925 201925 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C232:99 scaffold157 SAMTools SNP 201926 201926 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C226:99 scaffold157 SAMTools SNP 202205 202205 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold157 SAMTools SNP 204056 204056 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 204662 204662 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 205467 205467 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold157 SAMTools SNP 205668 205668 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold157 SAMTools SNP 205723 205723 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.18%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 206237 206237 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold157 SAMTools SNP 206443 206443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.012%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 206464 206464 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D49%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold157 SAMTools SNP 206593 206593 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C7%3BMQ%3D49%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold157 SAMTools SNP 206614 206614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold157 SAMTools SNP 206838 206838 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 206868 206868 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold157 SAMTools SNP 206895 206895 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 207122 207122 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold157 SAMTools SNP 207680 207680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C10%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold157 SAMTools SNP 213256 213256 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C1%2C29%3BMQ%3D49%3BFQ%3D222%3BPV4%3D0.45%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold157 SAMTools SNP 213905 213905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold157 SAMTools SNP 214005 214005 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold157 SAMTools SNP 215869 215869 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold157 SAMTools SNP 216551 216551 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C4%2C0%2C158%3BMQ%3D50%3BFQ%3D125%3BPV4%3D3.2e-117%2C4.6e-198%2C1%2C3.5e-114;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold157 SAMTools SNP 217090 217090 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C161%2C19%2C232%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 218652 218652 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold157 SAMTools SNP 220335 220335 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C4.7e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C10%2C0:16 scaffold157 SAMTools SNP 221121 221121 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold157 SAMTools SNP 223453 223453 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C39%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold157 SAMTools SNP 225787 225787 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold157 SAMTools SNP 226016 226016 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C2%3BMQ%3D47%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold157 SAMTools SNP 226019 226019 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D47%3BFQ%3D65%3BPV4%3D1%2C0.2%2C0.016%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C242:95 scaffold157 SAMTools SNP 226604 226604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C3%3BMQ%3D48%3BFQ%3D65%3BPV4%3D0.24%2C0.24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold157 SAMTools SNP 230870 230870 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold157 SAMTools SNP 232697 232697 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold157 SAMTools SNP 233001 233001 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.27%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold157 SAMTools SNP 235353 235353 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C0.31%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold157 SAMTools SNP 235394 235394 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 235397 235397 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 236329 236329 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 236353 236353 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 236653 236653 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 237979 237979 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C236:99 scaffold157 SAMTools SNP 238244 238244 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold157 SAMTools SNP 238700 238700 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold157 SAMTools SNP 240089 240089 43.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold157 SAMTools SNP 240234 240234 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C28%2C30%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.81%2C2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold157 SAMTools SNP 245688 245688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold157 SAMTools SNP 245760 245760 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.52%2C0.43%2C1%2C5.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C192:99 scaffold157 SAMTools SNP 245931 245931 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold157 SAMTools SNP 253588 253588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 255509 255509 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 267828 267828 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 267840 267840 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 269119 269119 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 269499 269499 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 270022 270022 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 272128 272128 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold157 SAMTools SNP 276627 276627 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 280546 280546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold157 SAMTools SNP 280552 280552 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold157 SAMTools SNP 280654 280654 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold157 SAMTools SNP 280679 280679 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 281191 281191 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C208:99 scaffold157 SAMTools SNP 281254 281254 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold157 SAMTools SNP 284870 284870 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold157 SAMTools SNP 285286 285286 56.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold157 SAMTools SNP 285309 285309 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold157 SAMTools SNP 290692 290692 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold157 SAMTools SNP 291386 291386 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.58%2C9.1e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold157 SAMTools SNP 291508 291508 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C39%2C0:70 scaffold157 SAMTools SNP 292159 292159 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 292404 292404 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 292530 292530 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C156:90 scaffold157 SAMTools SNP 293112 293112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold157 SAMTools SNP 293444 293444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 297721 297721 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold157 SAMTools SNP 300760 300760 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold157 SAMTools SNP 301696 301696 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold157 SAMTools SNP 302527 302527 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold157 SAMTools SNP 304336 304336 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.00012%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold157 SAMTools SNP 305125 305125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C3%2C16%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C0.0052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 305587 305587 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 305644 305644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold157 SAMTools SNP 305674 305674 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold157 SAMTools SNP 311403 311403 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold157 SAMTools SNP 311838 311838 41.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold157 SAMTools SNP 312355 312355 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C48%2C0:83 scaffold157 SAMTools SNP 312419 312419 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.01%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C150:99 scaffold157 SAMTools SNP 341181 341181 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 341582 341582 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold157 SAMTools SNP 342658 342658 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C49:52 scaffold157 SAMTools SNP 342720 342720 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 342878 342878 37.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold157 SAMTools SNP 343362 343362 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 352751 352751 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold157 SAMTools SNP 360763 360763 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold157 SAMTools SNP 360882 360882 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 360914 360914 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.16%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold157 SAMTools SNP 368148 368148 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.023%2C0.051%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold157 SAMTools SNP 368835 368835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold157 SAMTools SNP 368860 368860 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 368874 368874 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.037%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold157 SAMTools SNP 369204 369204 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold157 SAMTools SNP 369294 369294 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 369315 369315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 369684 369684 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C20%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold157 SAMTools SNP 370150 370150 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C37%2C15%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D7.8e-05%2C8.7e-07%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold157 SAMTools SNP 370357 370357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C41%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 370564 370564 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 371112 371112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 371184 371184 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold157 SAMTools SNP 371338 371338 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.28%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C243:99 scaffold157 SAMTools SNP 371377 371377 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold157 SAMTools SNP 372089 372089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold157 SAMTools SNP 372436 372436 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold157 SAMTools SNP 372439 372439 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold157 SAMTools SNP 372458 372458 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 372463 372463 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold157 SAMTools SNP 373132 373132 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold157 SAMTools SNP 373153 373153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold157 SAMTools SNP 373200 373200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C6%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold157 SAMTools SNP 373505 373505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C32%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold157 SAMTools SNP 373553 373553 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 373821 373821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold157 SAMTools SNP 373854 373854 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 373978 373978 61.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold157 SAMTools SNP 374123 374123 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold157 SAMTools SNP 381267 381267 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 381514 381514 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C38:41 scaffold157 SAMTools SNP 382152 382152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 383858 383858 118 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C104%2C167%2C0%2C158:27 scaffold157 SAMTools SNP 383909 383909 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C198:99 scaffold157 SAMTools SNP 384032 384032 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold157 SAMTools SNP 389268 389268 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 389326 389326 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold157 SAMTools SNP 389334 389334 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold157 SAMTools SNP 389397 389397 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C15%3BMQ%3D45%3BFQ%3D-6.96%3BPV4%3D0.13%2C0.026%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C21:24 scaffold157 SAMTools SNP 389427 389427 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C3%2C0%3BMQ%3D44%3BFQ%3D14.2%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold157 SAMTools SNP 389568 389568 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00016%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold157 SAMTools SNP 389598 389598 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold157 SAMTools SNP 396574 396574 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold157 SAMTools SNP 396645 396645 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold157 SAMTools SNP 396672 396672 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C29:32 scaffold157 SAMTools SNP 396692 396692 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold157 SAMTools SNP 396702 396702 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold157 SAMTools SNP 396818 396818 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D45%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C184:63 scaffold157 SAMTools SNP 396849 396849 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D42%3BFQ%3D50%3BPV4%3D0.14%2C1%2C0.1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C121:80 scaffold157 SAMTools SNP 396869 396869 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold157 SAMTools SNP 398369 398369 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold157 SAMTools SNP 400204 400204 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C6.2e-43%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C240:91 scaffold157 SAMTools SNP 400650 400650 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold157 SAMTools SNP 403547 403547 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold157 SAMTools SNP 403689 403689 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C138:58 scaffold157 SAMTools SNP 404207 404207 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold157 SAMTools SNP 404402 404402 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C195:99 scaffold157 SAMTools SNP 404432 404432 175 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C56%2C32%2C201%2C0%2C195:45 scaffold157 SAMTools SNP 404450 404450 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D0.33%2C0.037%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C41:43 scaffold157 SAMTools SNP 405883 405883 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.034%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold157 SAMTools SNP 405903 405903 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 407108 407108 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold157 SAMTools SNP 407138 407138 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 407659 407659 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C2.1e-10%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 409555 409555 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.45%2C6.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold157 SAMTools SNP 410460 410460 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C1%2C15%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold157 SAMTools SNP 410514 410514 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.028%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C219:89 scaffold157 SAMTools SNP 410544 410544 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold157 SAMTools SNP 411597 411597 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 413839 413839 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold157 SAMTools SNP 414097 414097 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.093%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold157 SAMTools SNP 416529 416529 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold157 SAMTools SNP 416791 416791 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C15%2C0:27 scaffold157 SAMTools SNP 417383 417383 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold157 SAMTools SNP 417448 417448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold157 SAMTools SNP 418135 418135 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C224:99 scaffold157 SAMTools SNP 419427 419427 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 419700 419700 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.13%2C2.8e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold157 SAMTools SNP 419733 419733 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.015%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C65:68 scaffold157 SAMTools SNP 419767 419767 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.18%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold157 SAMTools SNP 420188 420188 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.51%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold157 SAMTools SNP 420685 420685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold157 SAMTools SNP 420825 420825 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold157 SAMTools SNP 422044 422044 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C121:99 scaffold157 SAMTools SNP 422234 422234 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold157 SAMTools SNP 422415 422415 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 422430 422430 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold157 SAMTools SNP 424025 424025 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C21%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.49%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold157 SAMTools SNP 430395 430395 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold157 SAMTools SNP 431086 431086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 431114 431114 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C3:6 scaffold157 SAMTools SNP 431129 431129 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C14:17 scaffold157 SAMTools SNP 431774 431774 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C21%2C0:39 scaffold157 SAMTools SNP 432135 432135 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 432737 432737 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold157 SAMTools SNP 432909 432909 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold157 SAMTools SNP 435069 435069 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold157 SAMTools SNP 435170 435170 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold157 SAMTools SNP 438450 438450 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold157 SAMTools SNP 440988 440988 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold157 SAMTools SNP 441014 441014 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold157 SAMTools SNP 442369 442369 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 448020 448020 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold157 SAMTools SNP 465499 465499 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C122%2C1%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 465543 465543 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C63%2C0%2C31%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.018%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold157 SAMTools SNP 470350 470350 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold157 SAMTools SNP 471677 471677 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C33%2C0:63 scaffold157 SAMTools SNP 473950 473950 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.56%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold157 SAMTools SNP 474382 474382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C39%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold157 SAMTools SNP 477335 477335 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold157 SAMTools SNP 478085 478085 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C8.6e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C74:77 scaffold157 SAMTools SNP 478583 478583 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C63%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold157 SAMTools SNP 479110 479110 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C0%2C28%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0075%2C0.4%2C1%2C9.6e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold157 SAMTools SNP 479139 479139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold157 SAMTools SNP 479884 479884 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C9%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold157 SAMTools SNP 480278 480278 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold157 SAMTools SNP 480316 480316 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C39%2C0:75 scaffold157 SAMTools SNP 480366 480366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold157 SAMTools SNP 482895 482895 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold157 SAMTools SNP 484687 484687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold157 SAMTools SNP 484711 484711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold157 SAMTools SNP 484906 484906 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 484931 484931 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold157 SAMTools SNP 484970 484970 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 485319 485319 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold157 SAMTools SNP 487153 487153 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 487430 487430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold157 SAMTools SNP 487448 487448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 495491 495491 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold157 SAMTools SNP 496223 496223 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 497181 497181 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold157 SAMTools SNP 497456 497456 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 499968 499968 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold157 SAMTools SNP 500636 500636 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold157 SAMTools SNP 502026 502026 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00025%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C225:99 scaffold157 SAMTools SNP 502278 502278 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold157 SAMTools SNP 503752 503752 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold157 SAMTools SNP 503770 503770 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold157 SAMTools SNP 504185 504185 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 504188 504188 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 509933 509933 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 512342 512342 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 512547 512547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 512616 512616 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C147:99 scaffold157 SAMTools SNP 513507 513507 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold157 SAMTools SNP 513547 513547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 514065 514065 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold157 SAMTools SNP 514113 514113 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold157 SAMTools SNP 514134 514134 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold157 SAMTools SNP 514565 514565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 514685 514685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold157 SAMTools SNP 514688 514688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold157 SAMTools SNP 514709 514709 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C51%2C2%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 514977 514977 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C0%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 515073 515073 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C39%2C0:75 scaffold157 SAMTools SNP 515088 515088 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 515472 515472 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold157 SAMTools SNP 515616 515616 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold157 SAMTools SNP 515652 515652 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.51%2C0.051%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold157 SAMTools SNP 515664 515664 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold157 SAMTools SNP 516034 516034 51.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold157 SAMTools SNP 516335 516335 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold157 SAMTools SNP 516368 516368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 516389 516389 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold157 SAMTools SNP 516985 516985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold157 SAMTools SNP 518356 518356 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 518425 518425 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold157 SAMTools SNP 519179 519179 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C255%2C0:99 scaffold157 SAMTools SNP 519631 519631 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C105%2C0:99 scaffold157 SAMTools SNP 520316 520316 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold157 SAMTools SNP 524974 524974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C47%2C153%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 525025 525025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 525103 525103 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C90%2C11%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 526660 526660 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C146%2C0%2C232%3BMQ%3D50%3BFQ%3D220%3BPV4%3D9.2e-05%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold157 SAMTools SNP 526838 526838 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C10%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.68%2C9.9e-30%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold157 SAMTools SNP 528350 528350 4.12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C9%2C165%2C9%3BMQ%3D50%3BFQ%3D-225%3BPV4%3D8.5e-10%2C7e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C198%2C0:39 scaffold157 SAMTools SNP 528419 528419 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C93%2C0:99 scaffold157 SAMTools SNP 530387 530387 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold157 SAMTools SNP 530410 530410 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold157 SAMTools SNP 530814 530814 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.22%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold157 SAMTools SNP 531034 531034 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold157 SAMTools SNP 531070 531070 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.61%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold157 SAMTools SNP 534344 534344 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold157 SAMTools SNP 535127 535127 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold157 SAMTools SNP 535396 535396 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 540325 540325 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold157 SAMTools SNP 541725 541725 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C44%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.24%2C9.6e-92%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold157 SAMTools SNP 543625 543625 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C105%2C0:99 scaffold157 SAMTools SNP 543934 543934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 544332 544332 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C0%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 545265 545265 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C251%2C0%2C122%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C7.6e-05%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold157 SAMTools SNP 545270 545270 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C123%2C0%2C246%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold157 SAMTools SNP 545294 545294 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C241%2C0%2C118%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold157 SAMTools SNP 545832 545832 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold157 SAMTools SNP 545846 545846 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold157 SAMTools SNP 546129 546129 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 546234 546234 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C35:38 scaffold157 SAMTools SNP 546375 546375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C35%2C13%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 546781 546781 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C38%2C12%2C18%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.29%2C1.2e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold157 SAMTools SNP 546838 546838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C53%2C36%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 549127 549127 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 549152 549152 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 549316 549316 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 549923 549923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 552710 552710 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold157 SAMTools SNP 552718 552718 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold157 SAMTools SNP 552917 552917 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold157 SAMTools SNP 553840 553840 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold157 SAMTools SNP 553938 553938 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold157 SAMTools SNP 553966 553966 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 554202 554202 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold157 SAMTools SNP 554639 554639 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D0.2%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C94:80 scaffold157 SAMTools SNP 562178 562178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C112%2C3%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00047%2C0.22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 562190 562190 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C115%2C7%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 563357 563357 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C7%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.16%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold157 SAMTools SNP 563369 563369 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C35%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold157 SAMTools SNP 563806 563806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 563829 563829 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C14%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold157 SAMTools SNP 563868 563868 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C9.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 563877 563877 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C18%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 564203 564203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C53%2C18%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.018%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 564299 564299 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 564530 564530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C46%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold157 SAMTools SNP 564548 564548 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold157 SAMTools SNP 564623 564623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C26%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 565327 565327 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C32%2C39%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 565681 565681 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 566921 566921 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold157 SAMTools SNP 583334 583334 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.038%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C91:39 scaffold157 SAMTools SNP 583342 583342 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.025%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold157 SAMTools SNP 585772 585772 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D4.56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C30:33 scaffold157 SAMTools SNP 585784 585784 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold157 SAMTools SNP 585890 585890 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold157 SAMTools SNP 588237 588237 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold157 SAMTools SNP 588693 588693 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold157 SAMTools SNP 590315 590315 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold157 SAMTools SNP 590604 590604 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold157 SAMTools SNP 590873 590873 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C161:99 scaffold157 SAMTools SNP 591104 591104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold157 SAMTools SNP 591152 591152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 591191 591191 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold157 SAMTools SNP 591348 591348 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold157 SAMTools SNP 591566 591566 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold157 SAMTools SNP 592621 592621 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.24%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 592633 592633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.0037%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 593483 593483 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold157 SAMTools SNP 593498 593498 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C24%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.061%2C2e-06%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold157 SAMTools SNP 593514 593514 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold157 SAMTools SNP 593841 593841 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C15%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold157 SAMTools SNP 594227 594227 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C48%2C0:93 scaffold157 SAMTools SNP 594236 594236 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C249:99 scaffold157 SAMTools SNP 594242 594242 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.028%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold157 SAMTools SNP 594853 594853 205 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.19%2C0.091%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C219:99 scaffold157 SAMTools SNP 597043 597043 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold157 SAMTools SNP 598284 598284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 598395 598395 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 599379 599379 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold157 SAMTools SNP 599469 599469 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold157 SAMTools SNP 599525 599525 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold157 SAMTools SNP 606147 606147 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 606162 606162 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 608178 608178 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 608180 608180 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold157 SAMTools SNP 608909 608909 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold157 SAMTools SNP 609971 609971 47.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold157 SAMTools SNP 609989 609989 56.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold157 SAMTools SNP 613417 613417 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold157 SAMTools SNP 614809 614809 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold157 SAMTools SNP 616865 616865 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold157 SAMTools SNP 616895 616895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 616931 616931 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 618309 618309 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 618432 618432 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold157 SAMTools SNP 619222 619222 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold157 SAMTools SNP 619574 619574 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold157 SAMTools SNP 619598 619598 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold157 SAMTools SNP 619649 619649 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold157 SAMTools SNP 620989 620989 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold157 SAMTools SNP 621126 621126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold157 SAMTools SNP 621186 621186 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.21%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold157 SAMTools SNP 622316 622316 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold157 SAMTools SNP 622328 622328 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold157 SAMTools SNP 622809 622809 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold157 SAMTools SNP 623395 623395 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold157 SAMTools SNP 623679 623679 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C17%2C35%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 624038 624038 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C63%2C11%2C24%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.032%2C5.3e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold157 SAMTools SNP 624110 624110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 624126 624126 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 624673 624673 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold157 SAMTools SNP 625260 625260 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold157 SAMTools SNP 625640 625640 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold157 SAMTools SNP 625644 625644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold157 SAMTools SNP 628062 628062 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold157 SAMTools SNP 629960 629960 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold157 SAMTools SNP 629968 629968 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C18:21 scaffold157 SAMTools SNP 630775 630775 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold157 SAMTools SNP 630790 630790 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold157 SAMTools SNP 632629 632629 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C220:99 scaffold157 SAMTools SNP 632632 632632 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C234:99 scaffold157 SAMTools SNP 632761 632761 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold157 SAMTools SNP 634071 634071 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold157 SAMTools SNP 641788 641788 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold157 SAMTools SNP 642954 642954 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C19%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C175%2C0:99 scaffold157 SAMTools SNP 643044 643044 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C252:33 scaffold157 SAMTools SNP 643073 643073 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold157 SAMTools SNP 643114 643114 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C11%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold157 SAMTools SNP 643354 643354 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold157 SAMTools SNP 643757 643757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold157 SAMTools SNP 643786 643786 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C22%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D5.5e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C253:99 scaffold157 SAMTools SNP 643789 643789 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1.9e-17%2C0.058%2C1%2C1.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C220:99 scaffold157 SAMTools SNP 644308 644308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C31%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold157 SAMTools SNP 644336 644336 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C22%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.056%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold157 SAMTools SNP 644468 644468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold157 SAMTools SNP 659819 659819 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold157 SAMTools SNP 675564 675564 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1571 SAMTools SNP 8101 8101 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1571 SAMTools SNP 9095 9095 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C112:60 scaffold1571 SAMTools SNP 9219 9219 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C8.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1571 SAMTools SNP 10429 10429 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1571 SAMTools SNP 10443 10443 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1571 SAMTools SNP 11239 11239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1571 SAMTools SNP 11281 11281 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.44%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C171:82 scaffold1571 SAMTools SNP 11299 11299 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C214:34 scaffold1571 SAMTools SNP 12128 12128 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1571 SAMTools SNP 34745 34745 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1571 SAMTools SNP 91769 91769 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 103430 103430 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C10%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D3.4e-05%2C9.1e-09%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1571 SAMTools SNP 103814 103814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 106983 106983 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C33%2C0:63 scaffold1571 SAMTools SNP 107328 107328 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1571 SAMTools SNP 113996 113996 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1571 SAMTools SNP 114062 114062 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1571 SAMTools SNP 115245 115245 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1571 SAMTools SNP 115486 115486 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1571 SAMTools SNP 115540 115540 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C28%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1571 SAMTools SNP 117078 117078 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold1571 SAMTools SNP 117080 117080 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold1571 SAMTools SNP 117081 117081 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1571 SAMTools SNP 117345 117345 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C104:99 scaffold1571 SAMTools SNP 117435 117435 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold1571 SAMTools SNP 118929 118929 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C90%2C0:99 scaffold1571 SAMTools SNP 118985 118985 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1571 SAMTools SNP 121402 121402 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C36%2C0:69 scaffold1571 SAMTools SNP 125286 125286 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C250:62 scaffold1571 SAMTools SNP 125359 125359 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C23%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1571 SAMTools SNP 125376 125376 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 125821 125821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.38%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 125875 125875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 126498 126498 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1571 SAMTools SNP 126942 126942 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1571 SAMTools SNP 127789 127789 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C8%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.042%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1571 SAMTools SNP 128351 128351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1571 SAMTools SNP 128860 128860 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.062%2C0.18%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C241:99 scaffold1571 SAMTools SNP 128895 128895 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C0.35%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1571 SAMTools SNP 130239 130239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1571 SAMTools SNP 130275 130275 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.26%2C0.12%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1571 SAMTools SNP 141709 141709 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D447%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C186%2C40%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 141735 141735 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C183%2C44%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 142041 142041 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C45%2C32%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.0025%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 142224 142224 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C11%2C81%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.41%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 142239 142239 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C22%2C77%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C0.0051%2C1%2C9.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 142569 142569 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C116%2C1%2C16%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.42%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1571 SAMTools SNP 142587 142587 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C231%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1571 SAMTools SNP 142689 142689 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C27%2C0:51 scaffold1571 SAMTools SNP 142719 142719 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 143257 143257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C0%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-07%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 143295 143295 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.074%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1571 SAMTools SNP 143333 143333 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C18%2C0:33 scaffold1571 SAMTools SNP 143357 143357 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.2%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1571 SAMTools SNP 143372 143372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C0%2C197%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 144107 144107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D690%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C239%2C450%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1571 SAMTools SNP 144318 144318 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C381%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1571 SAMTools SNP 145478 145478 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1571 SAMTools SNP 146130 146130 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1571 SAMTools SNP 148556 148556 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold1571 SAMTools SNP 148604 148604 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1571 SAMTools SNP 149257 149257 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1571 SAMTools SNP 149267 149267 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1571 SAMTools SNP 149687 149687 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1571 SAMTools SNP 149689 149689 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1571 SAMTools SNP 200684 200684 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1571 SAMTools SNP 226793 226793 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1571 SAMTools SNP 228979 228979 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1571 SAMTools SNP 229055 229055 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1571 SAMTools SNP 248967 248967 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1571 SAMTools SNP 249106 249106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold1571 SAMTools SNP 253149 253149 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1571 SAMTools SNP 254361 254361 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1571 SAMTools SNP 254363 254363 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1571 SAMTools SNP 254375 254375 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1571 SAMTools SNP 258191 258191 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1571 SAMTools SNP 279991 279991 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1571 SAMTools SNP 314330 314330 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.17%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1571 SAMTools SNP 314925 314925 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.028%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C109:49 scaffold1571 SAMTools SNP 314934 314934 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0064%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C78:50 scaffold1571 SAMTools SNP 315714 315714 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1571 SAMTools SNP 315979 315979 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C149:31 scaffold1571 SAMTools SNP 316172 316172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1571 SAMTools SNP 316315 316315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1572 SAMTools SNP 849 849 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1572 SAMTools SNP 2199 2199 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1572 SAMTools SNP 2258 2258 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 2471 2471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 56541 56541 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C135:99 scaffold1572 SAMTools SNP 56544 56544 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C224:99 scaffold1572 SAMTools SNP 56735 56735 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1572 SAMTools SNP 57229 57229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C51%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 57396 57396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 57643 57643 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C13%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 61232 61232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C35%2C114%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 61525 61525 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C24%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 61806 61806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1572 SAMTools SNP 62625 62625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C61%2C13%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 62661 62661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C54%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 62709 62709 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.052%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1572 SAMTools SNP 62870 62870 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1572 SAMTools SNP 63180 63180 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0106%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C8%2C2%2C2%3BMQ%3D31%3BFQ%3D6.2%3BPV4%3D0.63%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C222:31 scaffold1572 SAMTools SNP 63394 63394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C7%2C130%2C2%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.083%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 63779 63779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C33%3BMQ%3D36%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1572 SAMTools SNP 63794 63794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C35%3BMQ%3D36%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1572 SAMTools SNP 64863 64863 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C27%3BMQ%3D42%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1572 SAMTools SNP 64878 64878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C119%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 64914 64914 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C14%2C0%2C39%3BMQ%3D39%3BFQ%3D183%3BPV4%3D1.9e-12%2C1%2C0.0028%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1572 SAMTools SNP 64933 64933 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C0%2C43%3BMQ%3D36%3BFQ%3D184%3BPV4%3D1.3e-11%2C0.0031%2C0.0048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1572 SAMTools SNP 65234 65234 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C21%3BMQ%3D49%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1572 SAMTools SNP 65254 65254 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C70%2C7%3BMQ%3D49%3BFQ%3D141%3BPV4%3D0.19%2C0.19%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold1572 SAMTools SNP 65471 65471 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C29%2C101%2C0%3BMQ%3D49%3BFQ%3D225%3BPV4%3D2.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 65489 65489 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C43%2C72%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D3e-10%2C1%2C1%2C2.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1572 SAMTools SNP 65948 65948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 65978 65978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 66214 66214 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 66230 66230 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C76%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-15%2C2.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 66266 66266 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C72%2C48%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-18%2C0.022%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 66269 66269 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C16%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-17%2C8.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 66462 66462 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C4%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1572 SAMTools SNP 66522 66522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1572 SAMTools SNP 66537 66537 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C70%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1572 SAMTools SNP 66751 66751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 66766 66766 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C8%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 67939 67939 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C42%2C0:71 scaffold1572 SAMTools SNP 68016 68016 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C93%2C0:99 scaffold1572 SAMTools SNP 68107 68107 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1572 SAMTools SNP 69001 69001 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 72677 72677 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1572 SAMTools SNP 74207 74207 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1572 SAMTools SNP 74741 74741 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C12%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1572 SAMTools SNP 74807 74807 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 76577 76577 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D97%2C36%2C47%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D7.9e-06%2C1e-06%2C1%2C5.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1572 SAMTools SNP 78463 78463 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 78469 78469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1572 SAMTools SNP 79582 79582 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C52%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1572 SAMTools SNP 80116 80116 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1572 SAMTools SNP 80138 80138 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1572 SAMTools SNP 80140 80140 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1572 SAMTools SNP 80659 80659 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 80713 80713 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1572 SAMTools SNP 80725 80725 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C161%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1572 SAMTools SNP 81106 81106 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold1572 SAMTools SNP 82539 82539 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 82578 82578 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1572 SAMTools SNP 83062 83062 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1572 SAMTools SNP 83104 83104 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 83237 83237 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 83478 83478 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 83498 83498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 83592 83592 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1572 SAMTools SNP 85091 85091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C8%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.3%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 85526 85526 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1572 SAMTools SNP 85608 85608 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C108%2C0:99 scaffold1572 SAMTools SNP 99564 99564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C16%2C26%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.022%2C0.4%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1572 SAMTools SNP 99923 99923 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C0.45%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1572 SAMTools SNP 99947 99947 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1572 SAMTools SNP 100309 100309 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1572 SAMTools SNP 101349 101349 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1572 SAMTools SNP 101598 101598 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C2%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C0.33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold1572 SAMTools SNP 101642 101642 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C126%2C0:99 scaffold1572 SAMTools SNP 102411 102411 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0022%2C0.039%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1572 SAMTools SNP 102664 102664 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1572 SAMTools SNP 102706 102706 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1572 SAMTools SNP 102801 102801 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1572 SAMTools SNP 103856 103856 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold1572 SAMTools SNP 104075 104075 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C14%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.35%2C1.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1572 SAMTools SNP 104664 104664 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.49%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C243:99 scaffold1572 SAMTools SNP 106543 106543 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold1572 SAMTools SNP 107055 107055 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C24%2C0:45 scaffold1572 SAMTools SNP 107076 107076 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.33%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C183:96 scaffold1572 SAMTools SNP 107145 107145 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1572 SAMTools SNP 107876 107876 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C31%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 109876 109876 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1572 SAMTools SNP 109891 109891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.29%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 110499 110499 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 110907 110907 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C57%2C0:99 scaffold1572 SAMTools SNP 110925 110925 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C231:99 scaffold1572 SAMTools SNP 110926 110926 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C23%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C163:99 scaffold1572 SAMTools SNP 110934 110934 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C244:99 scaffold1572 SAMTools SNP 111764 111764 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.32%2C0.073%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1572 SAMTools SNP 111791 111791 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.11%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1572 SAMTools SNP 113029 113029 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1572 SAMTools SNP 113052 113052 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1572 SAMTools SNP 114166 114166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 114202 114202 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.12%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 114614 114614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 114635 114635 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.45%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1572 SAMTools SNP 115375 115375 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.079%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1572 SAMTools SNP 115387 115387 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C0.41%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C171:99 scaffold1572 SAMTools SNP 122115 122115 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1572 SAMTools SNP 123912 123912 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 123945 123945 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1572 SAMTools SNP 126315 126315 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1572 SAMTools SNP 126363 126363 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1572 SAMTools SNP 126369 126369 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1572 SAMTools SNP 127199 127199 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1572 SAMTools SNP 127256 127256 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1572 SAMTools SNP 128063 128063 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1572 SAMTools SNP 128114 128114 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1572 SAMTools SNP 128966 128966 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C231:73 scaffold1572 SAMTools SNP 129092 129092 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C24%2C0:45 scaffold1572 SAMTools SNP 131800 131800 42.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1572 SAMTools SNP 131851 131851 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.52%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C158:65 scaffold1572 SAMTools SNP 131911 131911 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.081%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C153:99 scaffold1572 SAMTools SNP 132235 132235 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1572 SAMTools SNP 132882 132882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1572 SAMTools SNP 133400 133400 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1572 SAMTools SNP 133715 133715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1572 SAMTools SNP 134373 134373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1572 SAMTools SNP 134421 134421 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1572 SAMTools SNP 134464 134464 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1572 SAMTools SNP 138436 138436 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1572 SAMTools SNP 139560 139560 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1572 SAMTools SNP 139624 139624 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1572 SAMTools SNP 139758 139758 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1572 SAMTools SNP 140226 140226 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1572 SAMTools SNP 140251 140251 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1572 SAMTools SNP 140306 140306 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.32%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1572 SAMTools SNP 140307 140307 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1572 SAMTools SNP 154681 154681 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1572 SAMTools SNP 168641 168641 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1572 SAMTools SNP 172174 172174 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1572 SAMTools SNP 175516 175516 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1572 SAMTools SNP 189917 189917 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1574 SAMTools SNP 853 853 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1574 SAMTools SNP 967 967 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C66%2C2%3BMQ%3D49%3BFQ%3D-136%3BPV4%3D0.12%2C1.2e-20%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C109%2C0:99 scaffold1574 SAMTools SNP 1262 1262 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 60251 60251 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1574 SAMTools SNP 60283 60283 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1574 SAMTools SNP 60568 60568 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 81884 81884 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 82209 82209 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 92967 92967 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1574 SAMTools SNP 94479 94479 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 102536 102536 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1574 SAMTools SNP 102569 102569 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.07%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1574 SAMTools SNP 103180 103180 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 103210 103210 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 103237 103237 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1574 SAMTools SNP 103326 103326 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1574 SAMTools SNP 103368 103368 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C228:88 scaffold1574 SAMTools SNP 103514 103514 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1574 SAMTools SNP 103995 103995 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C11%2C0%3BMQ%3D39%3BFQ%3D58%3BPV4%3D2.7e-06%2C0.0038%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C218:88 scaffold1574 SAMTools SNP 104094 104094 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1574 SAMTools SNP 104126 104126 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1574 SAMTools SNP 104189 104189 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 104684 104684 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1574 SAMTools SNP 104714 104714 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1574 SAMTools SNP 123919 123919 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1574 SAMTools SNP 161208 161208 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 161256 161256 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 161287 161287 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 163638 163638 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1574 SAMTools SNP 166200 166200 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1574 SAMTools SNP 166214 166214 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1574 SAMTools SNP 167950 167950 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1574 SAMTools SNP 168079 168079 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1574 SAMTools SNP 177730 177730 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 177739 177739 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 177757 177757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1574 SAMTools SNP 178581 178581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0063%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 178612 178612 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1574 SAMTools SNP 178875 178875 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1574 SAMTools SNP 178893 178893 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1574 SAMTools SNP 179998 179998 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1574 SAMTools SNP 180046 180046 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.11%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1574 SAMTools SNP 182907 182907 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1574 SAMTools SNP 183371 183371 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1574 SAMTools SNP 183413 183413 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1574 SAMTools SNP 183942 183942 55.8 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1574 SAMTools SNP 184072 184072 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 184131 184131 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 186304 186304 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1574 SAMTools SNP 186313 186313 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 186370 186370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1574 SAMTools SNP 186418 186418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1574 SAMTools SNP 186617 186617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 186662 186662 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1574 SAMTools SNP 186728 186728 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C3.5e-05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1574 SAMTools SNP 187430 187430 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1574 SAMTools SNP 187475 187475 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.57%2C0.33%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1574 SAMTools SNP 187493 187493 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1574 SAMTools SNP 187502 187502 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C39%2C0:75 scaffold1574 SAMTools SNP 187559 187559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1574 SAMTools SNP 188008 188008 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1574 SAMTools SNP 188753 188753 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1574 SAMTools SNP 188759 188759 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1574 SAMTools SNP 189121 189121 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1574 SAMTools SNP 189175 189175 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1574 SAMTools SNP 189265 189265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1574 SAMTools SNP 189507 189507 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C230:62 scaffold1574 SAMTools SNP 194017 194017 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1574 SAMTools SNP 194023 194023 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold1574 SAMTools SNP 217199 217199 11.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1574 SAMTools SNP 217226 217226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1574 SAMTools SNP 217259 217259 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C45%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.15%2C0.41%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1574 SAMTools SNP 219885 219885 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 220344 220344 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 220419 220419 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1574 SAMTools SNP 257189 257189 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D3.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C30:32 scaffold1574 SAMTools SNP 259502 259502 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1574 SAMTools SNP 265166 265166 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1574 SAMTools SNP 265184 265184 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1574 SAMTools SNP 274387 274387 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.33%2C5.2e-05%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C138:82 scaffold1574 SAMTools SNP 307630 307630 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1574 SAMTools SNP 307681 307681 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C0.08%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C112:57 scaffold1574 SAMTools SNP 307712 307712 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C149:77 scaffold1574 SAMTools SNP 308476 308476 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1574 SAMTools SNP 313780 313780 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1574 SAMTools SNP 313842 313842 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 314805 314805 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 314808 314808 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 320308 320308 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1574 SAMTools SNP 320312 320312 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1574 SAMTools SNP 320317 320317 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1574 SAMTools SNP 320371 320371 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C209:79 scaffold1574 SAMTools SNP 320392 320392 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1574 SAMTools SNP 321009 321009 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.033%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold1574 SAMTools SNP 321516 321516 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 321522 321522 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1574 SAMTools SNP 321767 321767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1574 SAMTools SNP 321845 321845 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1574 SAMTools SNP 322356 322356 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1574 SAMTools SNP 322383 322383 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 328890 328890 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 328906 328906 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 328980 328980 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 329422 329422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 331430 331430 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1574 SAMTools SNP 331557 331557 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C30%2C0:57 scaffold1574 SAMTools SNP 331645 331645 85.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C15%2C0:27 scaffold1574 SAMTools SNP 331672 331672 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1574 SAMTools SNP 331750 331750 25.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1574 SAMTools SNP 331769 331769 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1574 SAMTools SNP 332106 332106 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C6%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C2.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1574 SAMTools SNP 332150 332150 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 332274 332274 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.051%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1574 SAMTools SNP 332684 332684 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold1574 SAMTools SNP 332908 332908 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1574 SAMTools SNP 333326 333326 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1574 SAMTools SNP 336200 336200 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 336227 336227 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1574 SAMTools SNP 336267 336267 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.51%2C0.088%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1574 SAMTools SNP 336269 336269 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00057%2C4e-08%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C201:99 scaffold1574 SAMTools SNP 337212 337212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 338271 338271 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1574 SAMTools SNP 338647 338647 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 338672 338672 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C2%2C4%3BMQ%3D49%3BFQ%3D114%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1574 SAMTools SNP 339512 339512 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C8%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1574 SAMTools SNP 340420 340420 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C31%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.057%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1574 SAMTools SNP 340647 340647 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1574 SAMTools SNP 340981 340981 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 341568 341568 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1574 SAMTools SNP 341587 341587 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1574 SAMTools SNP 341602 341602 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.084%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1574 SAMTools SNP 342082 342082 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1574 SAMTools SNP 347623 347623 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 347814 347814 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.11%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold1574 SAMTools SNP 347827 347827 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1574 SAMTools SNP 347854 347854 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 349266 349266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C40%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1574 SAMTools SNP 349304 349304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1574 SAMTools SNP 349373 349373 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1574 SAMTools SNP 349509 349509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1574 SAMTools SNP 349539 349539 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1574 SAMTools SNP 350692 350692 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1574 SAMTools SNP 350981 350981 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1574 SAMTools SNP 351098 351098 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.041%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1574 SAMTools SNP 351474 351474 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.027%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1574 SAMTools SNP 351493 351493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1574 SAMTools SNP 351924 351924 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1574 SAMTools SNP 352075 352075 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1574 SAMTools SNP 355569 355569 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1574 SAMTools SNP 355665 355665 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1574 SAMTools SNP 356783 356783 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.2%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1574 SAMTools SNP 358299 358299 215 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C28%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C240:99 scaffold1574 SAMTools SNP 393641 393641 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1574 SAMTools SNP 393712 393712 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C56%2C7%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1574 SAMTools SNP 429671 429671 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C40%2C11%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0019%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1574 SAMTools SNP 429689 429689 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C43%2C11%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.0059%2C1%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1574 SAMTools SNP 432998 432998 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1574 SAMTools SNP 435950 435950 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1574 SAMTools SNP 436078 436078 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.14%2C3.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1574 SAMTools SNP 441037 441037 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1574 SAMTools SNP 442700 442700 29.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1574 SAMTools SNP 447943 447943 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1574 SAMTools SNP 448791 448791 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1574 SAMTools SNP 449148 449148 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1575 SAMTools SNP 1785 1785 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1575 SAMTools SNP 1807 1807 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1575 SAMTools SNP 9960 9960 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1575 SAMTools SNP 10021 10021 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold1575 SAMTools SNP 10068 10068 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold1575 SAMTools SNP 10082 10082 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1575 SAMTools SNP 10537 10537 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold1575 SAMTools SNP 10607 10607 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1575 SAMTools SNP 20609 20609 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1575 SAMTools SNP 23511 23511 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1575 SAMTools SNP 23885 23885 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1575 SAMTools SNP 23917 23917 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C77:80 scaffold1575 SAMTools SNP 25526 25526 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C9%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D4.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1575 SAMTools SNP 26509 26509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1575 SAMTools SNP 26544 26544 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C21%2C52%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C5.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1575 SAMTools SNP 26614 26614 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0169%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C9:12 scaffold1575 SAMTools SNP 26738 26738 86.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C9:12 scaffold1575 SAMTools SNP 26863 26863 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.28%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1575 SAMTools SNP 27181 27181 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C45%2C0:87 scaffold1575 SAMTools SNP 40972 40972 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1575 SAMTools SNP 41263 41263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1575 SAMTools SNP 41302 41302 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1575 SAMTools SNP 43410 43410 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold1575 SAMTools SNP 43497 43497 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1575 SAMTools SNP 43964 43964 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1575 SAMTools SNP 44032 44032 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1575 SAMTools SNP 44609 44609 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1575 SAMTools SNP 48208 48208 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D42%3BFQ%3D47%3BPV4%3D0.52%2C1%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C178:77 scaffold1575 SAMTools SNP 48918 48918 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D40%3BFQ%3D11.3%3BPV4%3D0.43%2C1%2C0.012%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C160:40 scaffold1575 SAMTools SNP 49044 49044 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1575 SAMTools SNP 49991 49991 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1575 SAMTools SNP 50045 50045 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C24%2C0:45 scaffold1575 SAMTools SNP 50078 50078 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1575 SAMTools SNP 54069 54069 65.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold1575 SAMTools SNP 55414 55414 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C39%2C0:73 scaffold1575 SAMTools SNP 56613 56613 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1575 SAMTools SNP 61596 61596 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1575 SAMTools SNP 61604 61604 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1575 SAMTools SNP 62594 62594 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1575 SAMTools SNP 62615 62615 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1575 SAMTools SNP 103051 103051 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C38:41 scaffold1575 SAMTools SNP 103108 103108 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.065%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1575 SAMTools SNP 103511 103511 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1575 SAMTools SNP 103533 103533 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1575 SAMTools SNP 106549 106549 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.054%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1575 SAMTools SNP 108592 108592 51.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D24%3BFQ%3D-38%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C11%2C0:19 scaffold1576 SAMTools SNP 1027 1027 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1576 SAMTools SNP 6250 6250 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1576 SAMTools SNP 38340 38340 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C0.21%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1576 SAMTools SNP 38377 38377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C24%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.43%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1576 SAMTools SNP 39514 39514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1576 SAMTools SNP 49950 49950 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1576 SAMTools SNP 71216 71216 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1576 SAMTools SNP 73155 73155 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1578 SAMTools SNP 224 224 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1578 SAMTools SNP 228 228 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1578 SAMTools SNP 3293 3293 78.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D48%3BFQ%3D-16.1%3BPV4%3D1%2C5.9e-05%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C11:14 scaffold1578 SAMTools SNP 34572 34572 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1578 SAMTools SNP 37392 37392 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1578 SAMTools SNP 61247 61247 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C68%2C13%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C1%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1578 SAMTools SNP 62052 62052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C115%2C178%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1578 SAMTools SNP 63222 63222 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C63%2C0:99 scaffold1578 SAMTools SNP 63383 63383 9.08 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1578 SAMTools SNP 65698 65698 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1578 SAMTools SNP 72440 72440 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.25%2C5.9e-13%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1578 SAMTools SNP 73616 73616 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1578 SAMTools SNP 80231 80231 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1578 SAMTools SNP 96980 96980 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1578 SAMTools SNP 98834 98834 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C16%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C5.2e-09%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1578 SAMTools SNP 98899 98899 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C6%2C91%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.0035%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1578 SAMTools SNP 101894 101894 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C47%2C52%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D3.4e-07%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1578 SAMTools SNP 101895 101895 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C48%2C49%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D5.8e-08%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1578 SAMTools SNP 102026 102026 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C29%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1578 SAMTools SNP 102389 102389 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C54%2C24%2C25%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.86%2C4.1e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1578 SAMTools SNP 103036 103036 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C163%2C37%2C91%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.12%2C1.5e-209%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1578 SAMTools SNP 122676 122676 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C2.6e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C190:33 scaffold1578 SAMTools SNP 139454 139454 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1578 SAMTools SNP 158544 158544 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1578 SAMTools SNP 175648 175648 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1578 SAMTools SNP 176943 176943 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1578 SAMTools SNP 177562 177562 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1578 SAMTools SNP 177566 177566 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1578 SAMTools SNP 180067 180067 13.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C1%2C0:3 scaffold1578 SAMTools SNP 180180 180180 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1578 SAMTools SNP 180438 180438 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1578 SAMTools SNP 184447 184447 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1578 SAMTools SNP 185199 185199 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 1369 1369 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D45%3BFQ%3D50%3BPV4%3D1%2C1%2C0.22%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C213:80 scaffold1579 SAMTools SNP 1392 1392 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C53%2C0%3BMQ%3D46%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C81:84 scaffold1579 SAMTools SNP 2357 2357 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D17%2C1%2C199%2C73%3BMQ%3D31%3BFQ%3D-282%3BPV4%3D0.05%2C2.4e-19%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C255%2C0:99 scaffold1579 SAMTools SNP 8708 8708 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1579 SAMTools SNP 8732 8732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 11600 11600 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C2%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1579 SAMTools SNP 12220 12220 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1579 SAMTools SNP 13010 13010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1579 SAMTools SNP 13136 13136 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C0.17%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1579 SAMTools SNP 13563 13563 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C17%2C8%2C2%3BMQ%3D46%3BFQ%3D82%3BPV4%3D0.71%2C1%2C0.054%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1579 SAMTools SNP 13571 13571 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C6%2C5%3BMQ%3D47%3BFQ%3D133%3BPV4%3D0.16%2C0.024%2C0.015%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1579 SAMTools SNP 13606 13606 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C0%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D0.02%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1579 SAMTools SNP 14076 14076 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C3%2C26%2C3%3BMQ%3D34%3BFQ%3D180%3BPV4%3D0.35%2C2.5e-10%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C211:99 scaffold1579 SAMTools SNP 14100 14100 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C47%2C39%3BMQ%3D37%3BFQ%3D143%3BPV4%3D9e-05%2C5.1e-07%2C1.4e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C75%2C255:99 scaffold1579 SAMTools SNP 14645 14645 59.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1579 SAMTools SNP 32189 32189 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1579 SAMTools SNP 32247 32247 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 32503 32503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C119%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 32524 32524 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C10%2C61%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.23%2C0.23%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1579 SAMTools SNP 32528 32528 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C62%2C3%2C9%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.045%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1579 SAMTools SNP 32593 32593 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold1579 SAMTools SNP 42153 42153 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 42467 42467 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1579 SAMTools SNP 42527 42527 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.082%2C0.028%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1579 SAMTools SNP 42530 42530 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.082%2C0.00019%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1579 SAMTools SNP 42563 42563 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.062%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1579 SAMTools SNP 49559 49559 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1579 SAMTools SNP 49826 49826 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 110351 110351 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C33%2C0:63 scaffold1579 SAMTools SNP 110556 110556 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C50%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D1%2C0.0044%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C120%2C0:99 scaffold1579 SAMTools SNP 110834 110834 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C93%2C0:99 scaffold1579 SAMTools SNP 137709 137709 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.7%2C5.5e-14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1579 SAMTools SNP 139253 139253 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1579 SAMTools SNP 139277 139277 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C0.32%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1579 SAMTools SNP 139290 139290 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1579 SAMTools SNP 139490 139490 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.013%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1579 SAMTools SNP 139494 139494 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1579 SAMTools SNP 140785 140785 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 141380 141380 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 141461 141461 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 141479 141479 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 142743 142743 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 144941 144941 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold1579 SAMTools SNP 147990 147990 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C169:99 scaffold1579 SAMTools SNP 148005 148005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1579 SAMTools SNP 148014 148014 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1579 SAMTools SNP 151521 151521 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1579 SAMTools SNP 154906 154906 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C9%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C9.1e-14%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1579 SAMTools SNP 155290 155290 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1579 SAMTools SNP 155699 155699 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 155756 155756 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.22%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1579 SAMTools SNP 155783 155783 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1579 SAMTools SNP 155979 155979 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.29%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1579 SAMTools SNP 156388 156388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1579 SAMTools SNP 156490 156490 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.39%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1579 SAMTools SNP 157800 157800 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1579 SAMTools SNP 159123 159123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1579 SAMTools SNP 159680 159680 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C226:99 scaffold1579 SAMTools SNP 159888 159888 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.15%2C1.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1579 SAMTools SNP 161841 161841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C14%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1579 SAMTools SNP 169007 169007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C23%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 174977 174977 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1579 SAMTools SNP 175419 175419 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1579 SAMTools SNP 175439 175439 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.26%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1579 SAMTools SNP 175973 175973 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 175997 175997 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 176344 176344 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1579 SAMTools SNP 176345 176345 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1579 SAMTools SNP 176379 176379 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1579 SAMTools SNP 177980 177980 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1579 SAMTools SNP 179769 179769 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1579 SAMTools SNP 179838 179838 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1579 SAMTools SNP 180265 180265 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1579 SAMTools SNP 180308 180308 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1579 SAMTools SNP 180322 180322 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1579 SAMTools SNP 192896 192896 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1579 SAMTools SNP 193528 193528 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1579 SAMTools SNP 198164 198164 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C206:96 scaffold1579 SAMTools SNP 198497 198497 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C0.0046%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1579 SAMTools SNP 199664 199664 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold1579 SAMTools SNP 200504 200504 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1579 SAMTools SNP 200920 200920 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C44%2C3%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-09%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 200976 200976 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1579 SAMTools SNP 201373 201373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 203035 203035 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1579 SAMTools SNP 206286 206286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 206343 206343 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C241:99 scaffold1579 SAMTools SNP 212975 212975 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1579 SAMTools SNP 218184 218184 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1579 SAMTools SNP 219100 219100 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1579 SAMTools SNP 219122 219122 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.026%2C0.13%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1579 SAMTools SNP 219131 219131 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1579 SAMTools SNP 219880 219880 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.53%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1579 SAMTools SNP 219915 219915 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.19%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C237:99 scaffold1579 SAMTools SNP 220209 220209 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C141:99 scaffold1579 SAMTools SNP 220245 220245 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1579 SAMTools SNP 220293 220293 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1579 SAMTools SNP 220532 220532 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1579 SAMTools SNP 220568 220568 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1579 SAMTools SNP 220574 220574 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1579 SAMTools SNP 220631 220631 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.24%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C213:99 scaffold1579 SAMTools SNP 220806 220806 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1579 SAMTools SNP 220897 220897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1579 SAMTools SNP 221075 221075 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.34%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1579 SAMTools SNP 221123 221123 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.18%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1579 SAMTools SNP 221282 221282 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1579 SAMTools SNP 221393 221393 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1579 SAMTools SNP 221441 221441 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1579 SAMTools SNP 221614 221614 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1579 SAMTools SNP 221619 221619 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1579 SAMTools SNP 221788 221788 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold1579 SAMTools SNP 221797 221797 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold1579 SAMTools SNP 222549 222549 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold1579 SAMTools SNP 222565 222565 158 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold1579 SAMTools SNP 223432 223432 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.57%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C229:99 scaffold1579 SAMTools SNP 223468 223468 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.2%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C232:99 scaffold1579 SAMTools SNP 223852 223852 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 225952 225952 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1579 SAMTools SNP 226310 226310 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1579 SAMTools SNP 226407 226407 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1579 SAMTools SNP 226883 226883 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1579 SAMTools SNP 226904 226904 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold1579 SAMTools SNP 227821 227821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1579 SAMTools SNP 227848 227848 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1579 SAMTools SNP 229915 229915 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1579 SAMTools SNP 232860 232860 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold1579 SAMTools SNP 232889 232889 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C63%2C0:99 scaffold1579 SAMTools SNP 235844 235844 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 242534 242534 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 246190 246190 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1579 SAMTools SNP 246713 246713 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 255469 255469 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.55%2C8.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C187:57 scaffold1579 SAMTools SNP 255499 255499 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C27%2C0:51 scaffold1579 SAMTools SNP 255718 255718 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1579 SAMTools SNP 256105 256105 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold1579 SAMTools SNP 256390 256390 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1579 SAMTools SNP 256548 256548 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1579 SAMTools SNP 257536 257536 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1579 SAMTools SNP 259594 259594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 260672 260672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C40%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 260715 260715 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 260772 260772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C46%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-05%2C1%2C1%2C3.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 260821 260821 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C40%2C113%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-09%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 261163 261163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C92%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.24%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 261193 261193 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C96%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.31%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 262791 262791 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C35%2C4%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.75%2C0.012%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1579 SAMTools SNP 263862 263862 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C63%2C3%2C16%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.73%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1579 SAMTools SNP 263867 263867 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.14%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1579 SAMTools SNP 264041 264041 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold1579 SAMTools SNP 278472 278472 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1579 SAMTools SNP 296876 296876 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.19%2C0.077%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1579 SAMTools SNP 299869 299869 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1579 SAMTools SNP 300249 300249 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1579 SAMTools SNP 302651 302651 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 303072 303072 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.23%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1579 SAMTools SNP 303094 303094 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C1%2C12%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.23%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1579 SAMTools SNP 304857 304857 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C14%2C16%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C2.1e-47%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1579 SAMTools SNP 305327 305327 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C5%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0012%2C9.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C235:72 scaffold1579 SAMTools SNP 305895 305895 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1579 SAMTools SNP 306061 306061 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1579 SAMTools SNP 332857 332857 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1579 SAMTools SNP 332873 332873 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C219:99 scaffold1579 SAMTools SNP 333832 333832 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.16%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C244:99 scaffold1579 SAMTools SNP 333965 333965 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1579 SAMTools SNP 336030 336030 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C49%2C29%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 336039 336039 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C44%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.36%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 336072 336072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C73%2C19%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 336269 336269 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 336324 336324 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 337351 337351 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.016%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 337389 337389 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1579 SAMTools SNP 337428 337428 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1579 SAMTools SNP 338150 338150 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C5%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.17%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1579 SAMTools SNP 338466 338466 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C1%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0077%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1579 SAMTools SNP 338598 338598 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C48%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 338967 338967 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 339335 339335 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C7%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 339434 339434 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1579 SAMTools SNP 339905 339905 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 340267 340267 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.13%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1579 SAMTools SNP 340549 340549 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00033%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1579 SAMTools SNP 341345 341345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1579 SAMTools SNP 341506 341506 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C255%2C0:99 scaffold1579 SAMTools SNP 341581 341581 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C54%2C24%2C46%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.2%2C1.2e-86%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1579 SAMTools SNP 341908 341908 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1579 SAMTools SNP 342040 342040 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C40%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1.1e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 342423 342423 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C51%2C0:99 scaffold1579 SAMTools SNP 342448 342448 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 342547 342547 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C23%2C41%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.31%2C3.5e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1579 SAMTools SNP 347266 347266 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C21%2C0:34 scaffold1579 SAMTools SNP 347296 347296 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C0%3BMQ%3D41%3BFQ%3D97%3BPV4%3D1%2C3.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C189:99 scaffold1579 SAMTools SNP 347491 347491 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C6%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 347500 347500 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C58%2C5%2C32%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.53%2C0.21%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 347734 347734 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C6%3BMQ%3D48%3BFQ%3D192%3BPV4%3D0.38%2C1%2C0.35%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1579 SAMTools SNP 347764 347764 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.37%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1579 SAMTools SNP 348076 348076 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.45%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1579 SAMTools SNP 348112 348112 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1579 SAMTools SNP 348139 348139 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.12%2C4.5e-18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C195:99 scaffold1579 SAMTools SNP 348709 348709 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 348844 348844 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1579 SAMTools SNP 356960 356960 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1579 SAMTools SNP 366521 366521 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1579 SAMTools SNP 366663 366663 14.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D31%3BFQ%3D-32%3BPV4%3D1%2C1.4e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C5%2C0:8 scaffold1579 SAMTools SNP 386814 386814 26.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1579 SAMTools SNP 387730 387730 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.007%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C162:71 scaffold1579 SAMTools SNP 393366 393366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 398513 398513 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 398699 398699 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 401189 401189 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1579 SAMTools SNP 401564 401564 8.68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C17:21 scaffold1579 SAMTools SNP 404526 404526 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1579 SAMTools SNP 404602 404602 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1579 SAMTools SNP 404617 404617 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1579 SAMTools SNP 404954 404954 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1579 SAMTools SNP 426195 426195 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C0%2C306%2C0%3BMQ%3D44%3BFQ%3D183%3BPV4%3D1%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1579 SAMTools SNP 426635 426635 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1075%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C270%2C0%2C805%3BMQ%3D47%3BFQ%3D45%3BPV4%3D1%2C6.8e-06%2C1%2C4.8e-146;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C72:75 scaffold1579 SAMTools SNP 426653 426653 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C32%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C128:99 scaffold1579 SAMTools SNP 431392 431392 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1579 SAMTools SNP 431559 431559 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D45%3BFQ%3D75%3BPV4%3D1%2C1%2C0.071%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C154:99 scaffold1579 SAMTools SNP 431560 431560 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1579 SAMTools SNP 434568 434568 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C235%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 434731 434731 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C49%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C57:60 scaffold1579 SAMTools SNP 434777 434777 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1579 SAMTools SNP 436414 436414 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 438997 438997 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C234:99 scaffold1579 SAMTools SNP 439004 439004 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C2%2C30%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1579 SAMTools SNP 439246 439246 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C17%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold1579 SAMTools SNP 443942 443942 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C0%2C19%2C0%3BMQ%3D44%3BFQ%3D61%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C189:91 scaffold1579 SAMTools SNP 448445 448445 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C114:99 scaffold1579 SAMTools SNP 449160 449160 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1579 SAMTools SNP 459038 459038 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1579 SAMTools SNP 459048 459048 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1579 SAMTools SNP 459576 459576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C2%2C196%2C2%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1%2C1%2C0.01%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 459587 459587 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C7%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1579 SAMTools SNP 459838 459838 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C12%3BMQ%3D45%3BFQ%3D103%3BPV4%3D1%2C1%2C0.24%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C224:99 scaffold1579 SAMTools SNP 471370 471370 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1579 SAMTools SNP 471389 471389 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1579 SAMTools SNP 473306 473306 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1579 SAMTools SNP 476004 476004 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C6e-30%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1579 SAMTools SNP 476158 476158 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C239:99 scaffold1579 SAMTools SNP 476356 476356 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C38:41 scaffold1579 SAMTools SNP 476612 476612 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1579 SAMTools SNP 476623 476623 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1579 SAMTools SNP 476639 476639 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1579 SAMTools SNP 476852 476852 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold1579 SAMTools SNP 476900 476900 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.43%2C0.0095%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C107:55 scaffold1581 SAMTools SNP 19579 19579 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C2%2C34%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C2.3e-81%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1581 SAMTools SNP 21455 21455 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1581 SAMTools SNP 21727 21727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C33%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1581 SAMTools SNP 21739 21739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-130%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C103%2C0:99 scaffold1581 SAMTools SNP 21832 21832 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1581 SAMTools SNP 22248 22248 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C39%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1581 SAMTools SNP 22325 22325 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1581 SAMTools SNP 22385 22385 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C124:99 scaffold1581 SAMTools SNP 34323 34323 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1581 SAMTools SNP 41876 41876 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 43858 43858 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 44123 44123 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1581 SAMTools SNP 44388 44388 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1581 SAMTools SNP 58569 58569 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1581 SAMTools SNP 59100 59100 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1581 SAMTools SNP 69220 69220 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1581 SAMTools SNP 69292 69292 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1581 SAMTools SNP 70542 70542 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.011%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1581 SAMTools SNP 70557 70557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1581 SAMTools SNP 71297 71297 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 71300 71300 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 71694 71694 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 71698 71698 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 76789 76789 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.11%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1581 SAMTools SNP 76791 76791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1581 SAMTools SNP 76853 76853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1581 SAMTools SNP 77314 77314 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1581 SAMTools SNP 78581 78581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C30%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1581 SAMTools SNP 78999 78999 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C21%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1581 SAMTools SNP 79729 79729 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1581 SAMTools SNP 80218 80218 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1581 SAMTools SNP 80461 80461 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.14%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C182:99 scaffold1581 SAMTools SNP 80464 80464 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.19%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C182:99 scaffold1581 SAMTools SNP 80645 80645 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1581 SAMTools SNP 80662 80662 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1581 SAMTools SNP 80668 80668 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1581 SAMTools SNP 81578 81578 82.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C18%2C0:33 scaffold1581 SAMTools SNP 82097 82097 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold1581 SAMTools SNP 83980 83980 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1581 SAMTools SNP 88611 88611 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1581 SAMTools SNP 89811 89811 46.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1581 SAMTools SNP 95887 95887 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1581 SAMTools SNP 96404 96404 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1581 SAMTools SNP 96443 96443 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1581 SAMTools SNP 97060 97060 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1581 SAMTools SNP 98159 98159 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1581 SAMTools SNP 98471 98471 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1581 SAMTools SNP 100615 100615 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C155:31 scaffold1581 SAMTools SNP 100660 100660 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1581 SAMTools SNP 100691 100691 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1581 SAMTools SNP 101009 101009 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C66%2C0:99 scaffold1581 SAMTools SNP 101042 101042 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C54%2C0:99 scaffold1581 SAMTools SNP 101367 101367 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1581 SAMTools SNP 101839 101839 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.0013%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C130:89 scaffold1581 SAMTools SNP 102157 102157 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1583 SAMTools SNP 4813 4813 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 4858 4858 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 4927 4927 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1583 SAMTools SNP 4936 4936 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C158:46 scaffold1583 SAMTools SNP 5633 5633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1583 SAMTools SNP 5916 5916 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold1583 SAMTools SNP 5946 5946 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1583 SAMTools SNP 5970 5970 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C38%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold1583 SAMTools SNP 6555 6555 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 6564 6564 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.031%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 7256 7256 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1583 SAMTools SNP 7301 7301 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.00011%2C1%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1583 SAMTools SNP 7424 7424 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0068%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1583 SAMTools SNP 7638 7638 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 7644 7644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 7922 7922 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.046%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1583 SAMTools SNP 8242 8242 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1583 SAMTools SNP 8691 8691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1583 SAMTools SNP 14071 14071 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1583 SAMTools SNP 14131 14131 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C34%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1583 SAMTools SNP 15379 15379 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 15749 15749 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 17543 17543 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C13%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1583 SAMTools SNP 18506 18506 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C23%2C16%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D5.7e-05%2C5.8e-11%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1583 SAMTools SNP 19032 19032 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1583 SAMTools SNP 19533 19533 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C33%2C0:63 scaffold1583 SAMTools SNP 19542 19542 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C33%2C0:63 scaffold1583 SAMTools SNP 20196 20196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1583 SAMTools SNP 20789 20789 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1583 SAMTools SNP 20810 20810 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.44%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1583 SAMTools SNP 21528 21528 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1583 SAMTools SNP 21533 21533 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold1583 SAMTools SNP 21584 21584 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 26662 26662 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1583 SAMTools SNP 27543 27543 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 27544 27544 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 27756 27756 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 39351 39351 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1583 SAMTools SNP 40434 40434 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1583 SAMTools SNP 40870 40870 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1583 SAMTools SNP 40894 40894 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1583 SAMTools SNP 41497 41497 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.021%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold1583 SAMTools SNP 45286 45286 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1583 SAMTools SNP 48955 48955 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C153:99 scaffold1583 SAMTools SNP 48961 48961 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.16%2C0.003%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1583 SAMTools SNP 48962 48962 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1583 SAMTools SNP 48996 48996 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1583 SAMTools SNP 49718 49718 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1583 SAMTools SNP 49812 49812 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1583 SAMTools SNP 50189 50189 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.51%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1583 SAMTools SNP 50521 50521 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1583 SAMTools SNP 51164 51164 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold1583 SAMTools SNP 51195 51195 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 59552 59552 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1583 SAMTools SNP 60413 60413 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.27%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1583 SAMTools SNP 60742 60742 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.18%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1583 SAMTools SNP 60745 60745 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C84:87 scaffold1583 SAMTools SNP 60807 60807 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 60827 60827 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.21%2C4.3e-06%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1583 SAMTools SNP 61097 61097 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 61770 61770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 61926 61926 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1583 SAMTools SNP 62361 62361 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C39%2C0:75 scaffold1583 SAMTools SNP 66518 66518 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C156:30 scaffold1583 SAMTools SNP 66568 66568 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1583 SAMTools SNP 66571 66571 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1583 SAMTools SNP 67082 67082 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.62%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1583 SAMTools SNP 67147 67147 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1583 SAMTools SNP 67172 67172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1583 SAMTools SNP 68496 68496 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1583 SAMTools SNP 68547 68547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.029%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 68565 68565 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1583 SAMTools SNP 68804 68804 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1583 SAMTools SNP 68837 68837 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1583 SAMTools SNP 68863 68863 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1583 SAMTools SNP 69083 69083 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 69156 69156 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D34%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C60%2C0:99 scaffold1583 SAMTools SNP 73823 73823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1583 SAMTools SNP 74219 74219 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.044%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1583 SAMTools SNP 77889 77889 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 78623 78623 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C48%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1583 SAMTools SNP 78639 78639 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1583 SAMTools SNP 78666 78666 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1583 SAMTools SNP 78699 78699 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.53%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1583 SAMTools SNP 81164 81164 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 81182 81182 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C14%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.31%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1583 SAMTools SNP 81579 81579 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C15%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.00014%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1583 SAMTools SNP 81618 81618 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 81869 81869 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 81950 81950 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C48%2C0:93 scaffold1583 SAMTools SNP 82004 82004 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.079%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1583 SAMTools SNP 82019 82019 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0033%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1583 SAMTools SNP 82070 82070 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 82380 82380 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C40%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 83042 83042 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C3%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.031%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1583 SAMTools SNP 83046 83046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1583 SAMTools SNP 84306 84306 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C36%2C63%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.099%2C2e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1583 SAMTools SNP 85906 85906 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1583 SAMTools SNP 86404 86404 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1583 SAMTools SNP 87594 87594 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D661%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D293%2C157%2C0%2C211%3BMQ%3D50%3BFQ%3D126%3BPV4%3D3.5e-71%2C1.7e-66%2C1%2C2.5e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1583 SAMTools SNP 89451 89451 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1583 SAMTools SNP 90118 90118 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1583 SAMTools SNP 90302 90302 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C132%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C0.016%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 90308 90308 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C131%2C48%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-12%2C0.14%2C1%2C3.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 90769 90769 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1583 SAMTools SNP 94458 94458 54.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold1583 SAMTools SNP 95407 95407 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1583 SAMTools SNP 96517 96517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 96661 96661 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C13%2C0%2C19%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D3.6e-14%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1583 SAMTools SNP 99510 99510 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.2%2C2.3e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C20:23 scaffold1583 SAMTools SNP 99534 99534 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.091%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C3:6 scaffold1583 SAMTools SNP 103252 103252 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C6%3BMQ%3D44%3BFQ%3D25%3BPV4%3D1%2C4.7e-07%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1583 SAMTools SNP 103297 103297 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1583 SAMTools SNP 104020 104020 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C43%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1583 SAMTools SNP 104212 104212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C48%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 104227 104227 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C48%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.015%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 104911 104911 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1583 SAMTools SNP 104921 104921 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1583 SAMTools SNP 105297 105297 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C3%2C9%3BMQ%3D49%3BFQ%3D187%3BPV4%3D0.0049%2C0.058%2C0.0021%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1583 SAMTools SNP 106990 106990 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1583 SAMTools SNP 107238 107238 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C29%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-05%2C1%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 107330 107330 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7.6e-15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1583 SAMTools SNP 108665 108665 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C90%2C4%2C11%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.0013%2C0.075%2C1%2C5.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C249:99 scaffold1583 SAMTools SNP 111247 111247 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C20%2C37%2C38%3BMQ%3D30%3BFQ%3D168%3BPV4%3D0.011%2C0.26%2C0.00017%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1583 SAMTools SNP 115987 115987 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C266%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 118488 118488 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1583 SAMTools SNP 119073 119073 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.55%2C9.8e-12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1583 SAMTools SNP 119277 119277 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 119658 119658 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1583 SAMTools SNP 119667 119667 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1583 SAMTools SNP 121141 121141 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.14%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1583 SAMTools SNP 124358 124358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 124379 124379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1583 SAMTools SNP 124406 124406 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.21%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 126924 126924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1583 SAMTools SNP 127110 127110 71.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0242%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1.3e-05%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C6:9 scaffold1583 SAMTools SNP 127118 127118 91 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C54%2C0%2C116%2C34%2C113:99 scaffold1583 SAMTools SNP 127284 127284 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1349%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D416%2C17%2C358%2C317%3BMQ%3D50%3BFQ%3D214%3BPV4%3D2.6e-62%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1583 SAMTools SNP 127312 127312 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1217%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C40%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C67%2C0:99 scaffold1583 SAMTools SNP 127501 127501 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D499%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1583 SAMTools SNP 127633 127633 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 127638 127638 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C27%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C8.7e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 127755 127755 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C29%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 128788 128788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C63%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1583 SAMTools SNP 128802 128802 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C18%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C245:99 scaffold1583 SAMTools SNP 130092 130092 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 130300 130300 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1583 SAMTools SNP 130453 130453 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C0.15%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1583 SAMTools SNP 130513 130513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.033%2C0.39%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1583 SAMTools SNP 130764 130764 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 130776 130776 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 130898 130898 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C36%2C0:69 scaffold1583 SAMTools SNP 130970 130970 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1583 SAMTools SNP 130989 130989 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1583 SAMTools SNP 131267 131267 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1583 SAMTools SNP 131351 131351 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 131356 131356 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 131605 131605 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1583 SAMTools SNP 131633 131633 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.098%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C41:40 scaffold1583 SAMTools SNP 131652 131652 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 132109 132109 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1583 SAMTools SNP 132546 132546 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.33%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C125:49 scaffold1583 SAMTools SNP 132598 132598 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1583 SAMTools SNP 133779 133779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1583 SAMTools SNP 134868 134868 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1583 SAMTools SNP 135719 135719 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1583 SAMTools SNP 136796 136796 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1583 SAMTools SNP 140163 140163 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1583 SAMTools SNP 143988 143988 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C3%2C23%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.27%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C226:94 scaffold1583 SAMTools SNP 144106 144106 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold1583 SAMTools SNP 144220 144220 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 144275 144275 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1583 SAMTools SNP 148097 148097 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00084%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C80:56 scaffold1583 SAMTools SNP 148765 148765 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1583 SAMTools SNP 179579 179579 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C38%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1583 SAMTools SNP 179814 179814 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1583 SAMTools SNP 184249 184249 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C6%3BMQ%3D48%3BFQ%3D128%3BPV4%3D0.12%2C1%2C0.026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C235:99 scaffold1583 SAMTools SNP 189829 189829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C93%2C11%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 192952 192952 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1583 SAMTools SNP 227909 227909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 227954 227954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1583 SAMTools SNP 227975 227975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 228282 228282 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1583 SAMTools SNP 228633 228633 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1583 SAMTools SNP 228657 228657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 232249 232249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1583 SAMTools SNP 232360 232360 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C240%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 236166 236166 27.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold1583 SAMTools SNP 237217 237217 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C7.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 237273 237273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C36%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1583 SAMTools SNP 238180 238180 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D29%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C45%2C0:81 scaffold1583 SAMTools SNP 238194 238194 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C0%2C14%3BMQ%3D43%3BFQ%3D22%3BPV4%3D0.081%2C2.4e-06%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C235:52 scaffold1583 SAMTools SNP 238916 238916 29.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1583 SAMTools SNP 263234 263234 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C7%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1583 SAMTools SNP 264341 264341 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C65%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 269613 269613 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold1583 SAMTools SNP 272576 272576 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 295931 295931 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C10%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.038%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1583 SAMTools SNP 296488 296488 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C76%2C12%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.016%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 298845 298845 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 299213 299213 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1583 SAMTools SNP 299222 299222 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1583 SAMTools SNP 305970 305970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1583 SAMTools SNP 305998 305998 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C235:99 scaffold1583 SAMTools SNP 306319 306319 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold1583 SAMTools SNP 308609 308609 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1583 SAMTools SNP 308946 308946 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1583 SAMTools SNP 309207 309207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1583 SAMTools SNP 310432 310432 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1583 SAMTools SNP 310458 310458 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1583 SAMTools SNP 310956 310956 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.052%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold1583 SAMTools SNP 311217 311217 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1583 SAMTools SNP 328696 328696 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C15%2C40%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.021%2C4.6e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1583 SAMTools SNP 329071 329071 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C94:97 scaffold1583 SAMTools SNP 332161 332161 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1583 SAMTools SNP 334990 334990 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1583 SAMTools SNP 337008 337008 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.33%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1583 SAMTools SNP 337194 337194 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1583 SAMTools SNP 337362 337362 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold1583 SAMTools SNP 337389 337389 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1583 SAMTools SNP 337862 337862 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 337915 337915 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1583 SAMTools SNP 338011 338011 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 338414 338414 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 338468 338468 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1583 SAMTools SNP 338483 338483 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1583 SAMTools SNP 339172 339172 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1583 SAMTools SNP 341759 341759 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C238:31 scaffold1583 SAMTools SNP 344002 344002 48.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold1583 SAMTools SNP 344027 344027 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1583 SAMTools SNP 345254 345254 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D18%2C2%2C30%2C3%3BMQ%3D12%3BFQ%3D-11.3%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C16:19 scaffold1583 SAMTools SNP 347825 347825 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1583 SAMTools SNP 347840 347840 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1583 SAMTools SNP 348157 348157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C70%3BMQ%3D49%3BFQ%3D-203%3BPV4%3D1%2C0.49%2C0.42%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C176%2C0:99 scaffold1583 SAMTools SNP 348177 348177 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 348182 348182 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.16%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1583 SAMTools SNP 348242 348242 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C30%2C0:57 scaffold1583 SAMTools SNP 349726 349726 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C11%3BMQ%3D22%3BFQ%3D-3.53%3BPV4%3D0.06%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C26:29 scaffold1583 SAMTools SNP 365913 365913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C35%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 365944 365944 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C4%2C5%3BMQ%3D49%3BFQ%3D153%3BPV4%3D1%2C0.35%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1583 SAMTools SNP 366551 366551 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C91%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 366562 366562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C92%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 367063 367063 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C49%3BMQ%3D49%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1583 SAMTools SNP 368128 368128 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C1%2C15%3BMQ%3D19%3BFQ%3D49.8%3BPV4%3D1%2C0.036%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C83:80 scaffold1583 SAMTools SNP 370550 370550 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C9%2C0%3BMQ%3D40%3BFQ%3D70%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C97:99 scaffold1583 SAMTools SNP 370838 370838 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold1583 SAMTools SNP 373568 373568 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C53%2C11%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 373622 373622 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1583 SAMTools SNP 374443 374443 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 374827 374827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 375599 375599 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 375602 375602 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 381725 381725 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1583 SAMTools SNP 381800 381800 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.27%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1583 SAMTools SNP 383180 383180 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1583 SAMTools SNP 385617 385617 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 385763 385763 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1583 SAMTools SNP 388521 388521 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 388534 388534 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1583 SAMTools SNP 390159 390159 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1583 SAMTools SNP 390935 390935 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 390944 390944 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1583 SAMTools SNP 391858 391858 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C40%3BMQ%3D50%3BFQ%3D-179%3BPV4%3D0.4%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C0:99 scaffold1583 SAMTools SNP 391915 391915 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.54%2C0.094%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1583 SAMTools SNP 392674 392674 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1583 SAMTools SNP 392725 392725 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 392749 392749 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1583 SAMTools SNP 392768 392768 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1583 SAMTools SNP 393233 393233 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1583 SAMTools SNP 393887 393887 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.27%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1583 SAMTools SNP 393916 393916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 394397 394397 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1583 SAMTools SNP 394978 394978 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1583 SAMTools SNP 394984 394984 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C2.5e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1583 SAMTools SNP 394996 394996 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1583 SAMTools SNP 395869 395869 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 396912 396912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C71%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1583 SAMTools SNP 397062 397062 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C59%2C3%2C45%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C2.9e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1583 SAMTools SNP 397138 397138 25.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.27%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C7:10 scaffold1583 SAMTools SNP 397185 397185 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1583 SAMTools SNP 397484 397484 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1583 SAMTools SNP 399312 399312 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1583 SAMTools SNP 408221 408221 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 409136 409136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 409510 409510 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1583 SAMTools SNP 409531 409531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C8%3BMQ%3D47%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1583 SAMTools SNP 409889 409889 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C38%3BMQ%3D46%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1583 SAMTools SNP 412622 412622 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 412802 412802 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 413119 413119 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C50%2C0%2C12%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.2%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1583 SAMTools SNP 417164 417164 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.064%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1583 SAMTools SNP 420989 420989 41.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1583 SAMTools SNP 446098 446098 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C255%2C0:99 scaffold1583 SAMTools SNP 446274 446274 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1583 SAMTools SNP 449320 449320 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1583 SAMTools SNP 452105 452105 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1583 SAMTools SNP 453521 453521 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.21%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C151:99 scaffold1583 SAMTools SNP 454303 454303 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0099%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1583 SAMTools SNP 454310 454310 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0099%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1583 SAMTools SNP 454333 454333 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1583 SAMTools SNP 454668 454668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C28%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.28%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1583 SAMTools SNP 454847 454847 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C18%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.28%2C0.053%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1583 SAMTools SNP 454901 454901 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.25%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C228:99 scaffold1583 SAMTools SNP 454938 454938 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C48%2C0:93 scaffold1583 SAMTools SNP 455017 455017 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.43%2C0.0093%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C149:44 scaffold1583 SAMTools SNP 455021 455021 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.00033%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C201:67 scaffold1583 SAMTools SNP 510791 510791 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1583 SAMTools SNP 513118 513118 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.22%2C3.9e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold1583 SAMTools SNP 513550 513550 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1583 SAMTools SNP 513595 513595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1583 SAMTools SNP 513868 513868 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C174:99 scaffold1583 SAMTools SNP 514096 514096 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1583 SAMTools SNP 514162 514162 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1583 SAMTools SNP 514171 514171 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C12%2C0:21 scaffold1583 SAMTools SNP 514198 514198 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1583 SAMTools SNP 515679 515679 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 517822 517822 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 517840 517840 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 518349 518349 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1583 SAMTools SNP 518935 518935 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 539577 539577 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1583 SAMTools SNP 551615 551615 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C63:66 scaffold1583 SAMTools SNP 554612 554612 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1583 SAMTools SNP 554633 554633 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1583 SAMTools SNP 554976 554976 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C50%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1583 SAMTools SNP 555031 555031 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.077%2C0.041%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1583 SAMTools SNP 555351 555351 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.021%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C169:99 scaffold1583 SAMTools SNP 555378 555378 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1583 SAMTools SNP 555453 555453 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D8.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C151:99 scaffold1583 SAMTools SNP 555486 555486 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.25%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold1583 SAMTools SNP 557584 557584 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C9%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1583 SAMTools SNP 562053 562053 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 563838 563838 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1583 SAMTools SNP 563931 563931 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1583 SAMTools SNP 566080 566080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1583 SAMTools SNP 566113 566113 166 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C1%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.42%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1583 SAMTools SNP 566132 566132 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D35%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0011%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1583 SAMTools SNP 566155 566155 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C108%2C0:99 scaffold1583 SAMTools SNP 566176 566176 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1583 SAMTools SNP 566471 566471 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 567811 567811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 569896 569896 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1583 SAMTools SNP 569915 569915 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.066%2C0.074%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1583 SAMTools SNP 570705 570705 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1583 SAMTools SNP 619292 619292 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1583 SAMTools SNP 619508 619508 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1583 SAMTools SNP 619525 619525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C20%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1583 SAMTools SNP 619982 619982 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C60%2C0:99 scaffold1583 SAMTools SNP 620484 620484 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1583 SAMTools SNP 620502 620502 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1583 SAMTools SNP 621784 621784 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C37%2C0%2C8%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.3e-06%2C1%2C1.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1583 SAMTools SNP 622005 622005 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 622044 622044 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.55%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1583 SAMTools SNP 622406 622406 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1583 SAMTools SNP 623703 623703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1583 SAMTools SNP 623786 623786 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1583 SAMTools SNP 623817 623817 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1583 SAMTools SNP 624209 624209 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 624632 624632 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 624651 624651 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1583 SAMTools SNP 624937 624937 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 624990 624990 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 625666 625666 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1583 SAMTools SNP 625744 625744 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1583 SAMTools SNP 625765 625765 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 626216 626216 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 626261 626261 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1583 SAMTools SNP 626287 626287 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1583 SAMTools SNP 627015 627015 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1583 SAMTools SNP 627028 627028 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1583 SAMTools SNP 627416 627416 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold1583 SAMTools SNP 627764 627764 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1583 SAMTools SNP 628162 628162 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1583 SAMTools SNP 628693 628693 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1583 SAMTools SNP 629154 629154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 629386 629386 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C27%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1583 SAMTools SNP 629840 629840 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 650193 650193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C18%2C76%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 652177 652177 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C5%2C4%3BMQ%3D46%3BFQ%3D87%3BPV4%3D0.48%2C0.12%2C0.062%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1583 SAMTools SNP 652733 652733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C73%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 652736 652736 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C53%2C16%2C20%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.051%2C1.6e-06%2C0.43%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 660502 660502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C61%2C19%2C40%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.25%2C0.4%2C0.34%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 662174 662174 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C255%2C0:99 scaffold1583 SAMTools SNP 662178 662178 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold1583 SAMTools SNP 662291 662291 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C33%2C14%2C91%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.022%2C2.3e-147%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C141:37 scaffold1583 SAMTools SNP 663314 663314 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C0%2C178%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.9e-116%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1583 SAMTools SNP 687474 687474 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1583 SAMTools SNP 688968 688968 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1583 SAMTools SNP 689864 689864 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold1583 SAMTools SNP 690248 690248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1583 SAMTools SNP 690290 690290 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.044%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C238:99 scaffold1583 SAMTools SNP 690311 690311 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C213:99 scaffold1583 SAMTools SNP 690347 690347 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.33%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1583 SAMTools SNP 691599 691599 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1583 SAMTools SNP 692744 692744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 692877 692877 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 693650 693650 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1583 SAMTools SNP 693785 693785 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1583 SAMTools SNP 693888 693888 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1583 SAMTools SNP 693891 693891 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.022%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1583 SAMTools SNP 695497 695497 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1583 SAMTools SNP 695504 695504 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1583 SAMTools SNP 695529 695529 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1583 SAMTools SNP 695918 695918 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.29%2C0.046%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C160:49 scaffold1583 SAMTools SNP 696447 696447 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1583 SAMTools SNP 699144 699144 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 699147 699147 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 699285 699285 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1583 SAMTools SNP 699986 699986 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C171:72 scaffold1583 SAMTools SNP 699998 699998 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1583 SAMTools SNP 708030 708030 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1583 SAMTools SNP 708676 708676 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1583 SAMTools SNP 712638 712638 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C42%2C0:81 scaffold1583 SAMTools SNP 713330 713330 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1583 SAMTools SNP 748672 748672 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1583 SAMTools SNP 759151 759151 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1583 SAMTools SNP 848574 848574 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 849319 849319 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 849328 849328 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 849343 849343 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1583 SAMTools SNP 854954 854954 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1583 SAMTools SNP 860255 860255 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1583 SAMTools SNP 860259 860259 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1583 SAMTools SNP 867038 867038 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1583 SAMTools SNP 867098 867098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1583 SAMTools SNP 870449 870449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C21%2C39%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 870805 870805 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 871170 871170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 872861 872861 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C99%2C0:99 scaffold1583 SAMTools SNP 872939 872939 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1583 SAMTools SNP 877926 877926 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C63%2C0:99 scaffold1583 SAMTools SNP 878174 878174 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D176%2C1%2C197%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 878761 878761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 879222 879222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C70%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 879301 879301 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D4.1e-06%2C0.0055%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1583 SAMTools SNP 879760 879760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 881363 881363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 881769 881769 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C32%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 882332 882332 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0013%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 882728 882728 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C19%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 882909 882909 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C30%2C2%2C18%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.00058%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1583 SAMTools SNP 883524 883524 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1583 SAMTools SNP 883614 883614 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1583 SAMTools SNP 884407 884407 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold1583 SAMTools SNP 885378 885378 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C7%2C86%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 885389 885389 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C7%2C86%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 885460 885460 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C84%2C39%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 885484 885484 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1583 SAMTools SNP 888290 888290 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C189%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 899348 899348 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C26%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1583 SAMTools SNP 899680 899680 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1583 SAMTools SNP 899889 899889 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C4%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.29%2C0.44%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1583 SAMTools SNP 900178 900178 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.35%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1583 SAMTools SNP 900759 900759 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C10%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.01%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 901115 901115 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C39%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1583 SAMTools SNP 901413 901413 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C10%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1.6e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C222:99 scaffold1583 SAMTools SNP 901718 901718 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1583 SAMTools SNP 901745 901745 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1583 SAMTools SNP 902314 902314 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 902646 902646 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1583 SAMTools SNP 902980 902980 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1583 SAMTools SNP 903551 903551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.26%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 903590 903590 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1583 SAMTools SNP 903629 903629 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.61%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1583 SAMTools SNP 903995 903995 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold1583 SAMTools SNP 904040 904040 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1583 SAMTools SNP 904049 904049 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1583 SAMTools SNP 904784 904784 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1583 SAMTools SNP 904826 904826 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.27%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1583 SAMTools SNP 904841 904841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1583 SAMTools SNP 904853 904853 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1583 SAMTools SNP 904859 904859 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 905251 905251 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C45%2C7%2C49%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.44%2C1.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1583 SAMTools SNP 905325 905325 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1583 SAMTools SNP 905645 905645 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1583 SAMTools SNP 905790 905790 24.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1583 SAMTools SNP 906922 906922 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1583 SAMTools SNP 907401 907401 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C72%2C0:99 scaffold1583 SAMTools SNP 907941 907941 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1583 SAMTools SNP 907950 907950 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1583 SAMTools SNP 908233 908233 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 908242 908242 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1583 SAMTools SNP 908277 908277 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1583 SAMTools SNP 908405 908405 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1583 SAMTools SNP 908836 908836 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 909397 909397 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1583 SAMTools SNP 909744 909744 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0023%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1583 SAMTools SNP 926136 926136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1583 SAMTools SNP 926247 926247 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1583 SAMTools SNP 926343 926343 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C72%2C0:99 scaffold1583 SAMTools SNP 945067 945067 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C187:99 scaffold1583 SAMTools SNP 945119 945119 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1583 SAMTools SNP 945478 945478 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1583 SAMTools SNP 945738 945738 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1583 SAMTools SNP 945974 945974 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C139:64 scaffold1583 SAMTools SNP 945994 945994 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C4.4e-09%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold1583 SAMTools SNP 951070 951070 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1583 SAMTools SNP 951859 951859 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1583 SAMTools SNP 952200 952200 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C7.9e-07%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C79:53 scaffold1583 SAMTools SNP 953195 953195 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1583 SAMTools SNP 953774 953774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1583 SAMTools SNP 953812 953812 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1583 SAMTools SNP 953890 953890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold1583 SAMTools SNP 954442 954442 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0062%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1583 SAMTools SNP 954661 954661 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 954664 954664 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 955211 955211 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C9.5e-10%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C26:29 scaffold1583 SAMTools SNP 955511 955511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1583 SAMTools SNP 955559 955559 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C38:41 scaffold1583 SAMTools SNP 955586 955586 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C18%2C0:33 scaffold1583 SAMTools SNP 956010 956010 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1583 SAMTools SNP 956064 956064 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 956796 956796 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 956846 956846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 956867 956867 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1583 SAMTools SNP 956879 956879 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 957869 957869 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1583 SAMTools SNP 967477 967477 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1583 SAMTools SNP 967503 967503 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.14%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C80:57 scaffold1583 SAMTools SNP 967537 967537 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1583 SAMTools SNP 973663 973663 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C115:99 scaffold1583 SAMTools SNP 974299 974299 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1583 SAMTools SNP 974303 974303 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1583 SAMTools SNP 980309 980309 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 993941 993941 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1583 SAMTools SNP 1002029 1002029 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1583 SAMTools SNP 1070096 1070096 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1583 SAMTools SNP 1078983 1078983 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C33%2C0:63 scaffold1583 SAMTools SNP 1079474 1079474 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1583 SAMTools SNP 1079817 1079817 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C25%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D0.43%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1583 SAMTools SNP 1079822 1079822 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C194%2C3%2C78%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1.7e-06%2C1%2C1%2C9.7e-33;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1583 SAMTools SNP 1079893 1079893 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C234%2C12%2C213%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 1080241 1080241 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C68%2C2%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1583 SAMTools SNP 1080327 1080327 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C10%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1583 SAMTools SNP 1081262 1081262 54.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold1583 SAMTools SNP 1082091 1082091 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1583 SAMTools SNP 1082787 1082787 27.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold1583 SAMTools SNP 1089473 1089473 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1583 SAMTools SNP 1089557 1089557 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C8%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1583 SAMTools SNP 1089586 1089586 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1583 SAMTools SNP 1089620 1089620 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1584 SAMTools SNP 6080 6080 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 6108 6108 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 50221 50221 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C36%2C0:69 scaffold1584 SAMTools SNP 50585 50585 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1584 SAMTools SNP 52958 52958 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1584 SAMTools SNP 55164 55164 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1584 SAMTools SNP 55430 55430 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C59%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C181%2C0:99 scaffold1584 SAMTools SNP 56684 56684 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.24%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C227:99 scaffold1584 SAMTools SNP 56699 56699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1584 SAMTools SNP 57545 57545 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 59085 59085 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold1584 SAMTools SNP 59942 59942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1584 SAMTools SNP 60332 60332 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold1584 SAMTools SNP 60923 60923 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C9%2C44%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.025%2C2.6e-15%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1584 SAMTools SNP 60964 60964 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C60:63 scaffold1584 SAMTools SNP 73951 73951 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1584 SAMTools SNP 75986 75986 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1584 SAMTools SNP 78726 78726 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C71:74 scaffold1584 SAMTools SNP 78807 78807 24.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1584 SAMTools SNP 78822 78822 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1584 SAMTools SNP 78942 78942 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1584 SAMTools SNP 78962 78962 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1584 SAMTools SNP 79271 79271 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 79490 79490 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1584 SAMTools SNP 79520 79520 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1584 SAMTools SNP 79526 79526 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1584 SAMTools SNP 79529 79529 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1584 SAMTools SNP 79547 79547 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1584 SAMTools SNP 80475 80475 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 81083 81083 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1584 SAMTools SNP 81107 81107 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1584 SAMTools SNP 81673 81673 52.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold1584 SAMTools SNP 88467 88467 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.32%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C125:39 scaffold1584 SAMTools SNP 88480 88480 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1584 SAMTools SNP 88670 88670 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1584 SAMTools SNP 88705 88705 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 89761 89761 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1584 SAMTools SNP 90122 90122 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold1584 SAMTools SNP 90230 90230 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 91022 91022 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1584 SAMTools SNP 91162 91162 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C212:99 scaffold1584 SAMTools SNP 91236 91236 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1584 SAMTools SNP 91406 91406 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1584 SAMTools SNP 91777 91777 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C77:80 scaffold1584 SAMTools SNP 91784 91784 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1584 SAMTools SNP 91828 91828 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1584 SAMTools SNP 95816 95816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1584 SAMTools SNP 97242 97242 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 97684 97684 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C237%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1584 SAMTools SNP 98809 98809 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C28%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold1584 SAMTools SNP 98810 98810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1584 SAMTools SNP 99227 99227 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C288%2C54%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-09%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 99517 99517 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C19%2C10%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-16%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 99773 99773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C55%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1584 SAMTools SNP 99819 99819 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C51%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1584 SAMTools SNP 99882 99882 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C39%2C0:75 scaffold1584 SAMTools SNP 99887 99887 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00046%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1584 SAMTools SNP 100397 100397 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C79%2C0%2C31%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.021%2C0.026%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1584 SAMTools SNP 100417 100417 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C75%2C0%2C21%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.2%2C0.12%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1584 SAMTools SNP 100424 100424 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1584 SAMTools SNP 100435 100435 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1584 SAMTools SNP 100574 100574 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C314%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1584 SAMTools SNP 100599 100599 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D17%2C7%2C77%2C337%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1584 SAMTools SNP 101502 101502 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C16%2C6%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.8e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 102685 102685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C23%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D0.41%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold1584 SAMTools SNP 102712 102712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1584 SAMTools SNP 103403 103403 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C40%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0002%2C5.8e-71%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1584 SAMTools SNP 105008 105008 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1584 SAMTools SNP 105062 105062 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C26%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C135%2C0:99 scaffold1584 SAMTools SNP 105095 105095 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C0%2C17%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.00068%2C1%2C1%2C1.5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1584 SAMTools SNP 105245 105245 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C63%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C174:99 scaffold1584 SAMTools SNP 105281 105281 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C8.3e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C233:65 scaffold1584 SAMTools SNP 108755 108755 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 109105 109105 63.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold1584 SAMTools SNP 110044 110044 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1584 SAMTools SNP 110053 110053 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1584 SAMTools SNP 111616 111616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C2%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1584 SAMTools SNP 113108 113108 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0021%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C215:99 scaffold1584 SAMTools SNP 113627 113627 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C3%2C10%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.19%2C3.9e-06%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1584 SAMTools SNP 113669 113669 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 115163 115163 97.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C21%2C0:39 scaffold1584 SAMTools SNP 124072 124072 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C245:99 scaffold1584 SAMTools SNP 124545 124545 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C18%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.019%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1584 SAMTools SNP 127607 127607 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C30%2C0:57 scaffold1584 SAMTools SNP 129168 129168 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1584 SAMTools SNP 138715 138715 22.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1584 SAMTools SNP 139211 139211 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.027%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1584 SAMTools SNP 139238 139238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1584 SAMTools SNP 140057 140057 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 140069 140069 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 140078 140078 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.094%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 140087 140087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 140402 140402 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 140418 140418 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C3e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1584 SAMTools SNP 141320 141320 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 141811 141811 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1584 SAMTools SNP 142072 142072 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.43%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1584 SAMTools SNP 142613 142613 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C4%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 143085 143085 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D62%2C4%2C17%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C5.9e-24%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1584 SAMTools SNP 143090 143090 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C18%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.67%2C7.4e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1584 SAMTools SNP 143111 143111 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C12%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.012%2C0.1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1584 SAMTools SNP 143114 143114 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C18%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.00011%2C1%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1584 SAMTools SNP 143646 143646 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1584 SAMTools SNP 143718 143718 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1584 SAMTools SNP 143739 143739 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1584 SAMTools SNP 144088 144088 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C188:99 scaffold1584 SAMTools SNP 144304 144304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1584 SAMTools SNP 144345 144345 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold1584 SAMTools SNP 144763 144763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 144766 144766 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 144805 144805 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 144849 144849 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1584 SAMTools SNP 144994 144994 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C143:99 scaffold1584 SAMTools SNP 145011 145011 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.14%2C0.14%2C1%2C8.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C235:83 scaffold1584 SAMTools SNP 145161 145161 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1584 SAMTools SNP 145366 145366 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1584 SAMTools SNP 145381 145381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.27%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1584 SAMTools SNP 146543 146543 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C17%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1584 SAMTools SNP 146576 146576 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C23%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.28%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1584 SAMTools SNP 146929 146929 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C30%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.56%2C0.048%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1584 SAMTools SNP 147892 147892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1584 SAMTools SNP 148127 148127 96.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C15%2C0:27 scaffold1584 SAMTools SNP 148322 148322 206 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C255%2C0:99 scaffold1584 SAMTools SNP 148529 148529 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0049%2C4.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C76:57 scaffold1584 SAMTools SNP 148586 148586 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C28%2C0:53 scaffold1584 SAMTools SNP 153910 153910 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1584 SAMTools SNP 164831 164831 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1584 SAMTools SNP 168621 168621 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 171415 171415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 171620 171620 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 171885 171885 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1584 SAMTools SNP 172041 172041 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1584 SAMTools SNP 172055 172055 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 173069 173069 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 176918 176918 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1584 SAMTools SNP 177089 177089 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1584 SAMTools SNP 178665 178665 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1584 SAMTools SNP 179792 179792 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 179990 179990 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 180039 180039 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 180276 180276 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 180716 180716 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 181604 181604 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 181625 181625 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 182216 182216 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1584 SAMTools SNP 182419 182419 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.032%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1584 SAMTools SNP 182942 182942 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1584 SAMTools SNP 183494 183494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 184778 184778 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1584 SAMTools SNP 184829 184829 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1584 SAMTools SNP 185160 185160 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 185527 185527 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold1584 SAMTools SNP 185810 185810 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1584 SAMTools SNP 185816 185816 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 185820 185820 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 186831 186831 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1584 SAMTools SNP 187033 187033 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1584 SAMTools SNP 187743 187743 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1584 SAMTools SNP 249111 249111 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1584 SAMTools SNP 251057 251057 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 254460 254460 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1584 SAMTools SNP 257392 257392 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 259250 259250 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C36%2C0:69 scaffold1584 SAMTools SNP 262078 262078 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1584 SAMTools SNP 262083 262083 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1584 SAMTools SNP 265166 265166 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1584 SAMTools SNP 265394 265394 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1584 SAMTools SNP 298141 298141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 298152 298152 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 309501 309501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 310167 310167 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 310683 310683 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C6.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1584 SAMTools SNP 312682 312682 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.26%2C1.1e-12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C155:99 scaffold1584 SAMTools SNP 313285 313285 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1584 SAMTools SNP 314866 314866 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1584 SAMTools SNP 315256 315256 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold1584 SAMTools SNP 320037 320037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 320585 320585 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1584 SAMTools SNP 327554 327554 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1584 SAMTools SNP 333134 333134 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 341846 341846 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1584 SAMTools SNP 350668 350668 10.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1584 SAMTools SNP 353672 353672 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C27%2C0:50 scaffold1584 SAMTools SNP 353741 353741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1584 SAMTools SNP 353892 353892 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1584 SAMTools SNP 353904 353904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1584 SAMTools SNP 353919 353919 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1584 SAMTools SNP 354658 354658 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1584 SAMTools SNP 354671 354671 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1584 SAMTools SNP 354785 354785 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.43%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1584 SAMTools SNP 355189 355189 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1584 SAMTools SNP 355205 355205 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 355250 355250 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1584 SAMTools SNP 356028 356028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C2%2C53%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.5%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1584 SAMTools SNP 356046 356046 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C34%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1584 SAMTools SNP 356145 356145 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1584 SAMTools SNP 356287 356287 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1584 SAMTools SNP 356358 356358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1584 SAMTools SNP 356597 356597 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold1584 SAMTools SNP 359528 359528 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1584 SAMTools SNP 360015 360015 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1584 SAMTools SNP 360412 360412 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 360500 360500 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 360881 360881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1584 SAMTools SNP 360894 360894 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D0%2C3%2C13%2C12%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C4:7 scaffold1584 SAMTools SNP 360914 360914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1584 SAMTools SNP 361089 361089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C14%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1584 SAMTools SNP 361381 361381 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1584 SAMTools SNP 362051 362051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1584 SAMTools SNP 364825 364825 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1584 SAMTools SNP 365193 365193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 365467 365467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1584 SAMTools SNP 365483 365483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1584 SAMTools SNP 365506 365506 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.021%2C4.6e-05%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1584 SAMTools SNP 367767 367767 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1584 SAMTools SNP 367774 367774 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C107:99 scaffold1584 SAMTools SNP 369270 369270 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C21%2C0:39 scaffold1584 SAMTools SNP 370859 370859 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1584 SAMTools SNP 371499 371499 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1584 SAMTools SNP 372061 372061 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C36%2C0:69 scaffold1584 SAMTools SNP 372531 372531 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1584 SAMTools SNP 372572 372572 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1584 SAMTools SNP 373446 373446 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.9e-07%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C82:44 scaffold1584 SAMTools SNP 373722 373722 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C103:99 scaffold1584 SAMTools SNP 374138 374138 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C18%2C0:33 scaffold1584 SAMTools SNP 374580 374580 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.043%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1584 SAMTools SNP 375634 375634 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1584 SAMTools SNP 376166 376166 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1584 SAMTools SNP 377499 377499 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1584 SAMTools SNP 380784 380784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1584 SAMTools SNP 381647 381647 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.41%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1584 SAMTools SNP 382512 382512 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0041%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1584 SAMTools SNP 383219 383219 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1585 SAMTools SNP 112 112 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 768 768 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 771 771 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 4168 4168 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C230:77 scaffold1585 SAMTools SNP 4194 4194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1585 SAMTools SNP 4204 4204 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold1585 SAMTools SNP 4779 4779 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 5265 5265 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C1%3BMQ%3D39%3BFQ%3D78%3BPV4%3D0.34%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C233:99 scaffold1585 SAMTools SNP 5501 5501 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.49%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C171:99 scaffold1585 SAMTools SNP 5537 5537 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C233:99 scaffold1585 SAMTools SNP 5890 5890 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0047%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1585 SAMTools SNP 10209 10209 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1585 SAMTools SNP 12205 12205 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 12223 12223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 12962 12962 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1585 SAMTools SNP 13032 13032 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 13044 13044 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.29%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 13054 13054 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 20267 20267 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 20271 20271 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 20699 20699 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold1585 SAMTools SNP 20705 20705 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold1585 SAMTools SNP 20737 20737 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1585 SAMTools SNP 21419 21419 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1585 SAMTools SNP 21491 21491 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold1585 SAMTools SNP 22313 22313 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 26359 26359 37.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1585 SAMTools SNP 27509 27509 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.52%2C0.46%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1585 SAMTools SNP 27517 27517 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C216:99 scaffold1585 SAMTools SNP 27541 27541 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1585 SAMTools SNP 27657 27657 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1585 SAMTools SNP 29884 29884 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1585 SAMTools SNP 32686 32686 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C239:60 scaffold1585 SAMTools SNP 33000 33000 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C12%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.43%2C1.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1585 SAMTools SNP 34117 34117 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold1585 SAMTools SNP 34406 34406 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1585 SAMTools SNP 34442 34442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 34486 34486 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C30%2C0:57 scaffold1585 SAMTools SNP 35023 35023 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1585 SAMTools SNP 42994 42994 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1585 SAMTools SNP 43005 43005 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0016%2C1.8e-07%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1585 SAMTools SNP 43017 43017 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0055%2C3.4e-07%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1585 SAMTools SNP 43501 43501 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.0013%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 43541 43541 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1585 SAMTools SNP 43631 43631 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1585 SAMTools SNP 43761 43761 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1585 SAMTools SNP 43810 43810 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1585 SAMTools SNP 44182 44182 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 44212 44212 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1585 SAMTools SNP 44224 44224 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1585 SAMTools SNP 44963 44963 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.024%2C3.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1585 SAMTools SNP 45062 45062 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 45431 45431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1585 SAMTools SNP 45599 45599 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1585 SAMTools SNP 45916 45916 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 45986 45986 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1585 SAMTools SNP 45987 45987 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.56%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1585 SAMTools SNP 46420 46420 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C15%2C28%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.017%2C0.19%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1585 SAMTools SNP 48052 48052 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1585 SAMTools SNP 48062 48062 67.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold1585 SAMTools SNP 48406 48406 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1585 SAMTools SNP 48412 48412 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.11%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C99:99 scaffold1585 SAMTools SNP 48427 48427 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1585 SAMTools SNP 48616 48616 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1585 SAMTools SNP 48769 48769 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1585 SAMTools SNP 48936 48936 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold1585 SAMTools SNP 49368 49368 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C178:99 scaffold1585 SAMTools SNP 49758 49758 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1585 SAMTools SNP 50070 50070 54.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1585 SAMTools SNP 57905 57905 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1585 SAMTools SNP 57922 57922 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1585 SAMTools SNP 61641 61641 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1585 SAMTools SNP 75222 75222 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1585 SAMTools SNP 76226 76226 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1585 SAMTools SNP 76475 76475 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C30%2C0:57 scaffold1585 SAMTools SNP 76523 76523 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.00035%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C233:99 scaffold1585 SAMTools SNP 95961 95961 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1585 SAMTools SNP 95974 95974 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold1585 SAMTools SNP 95994 95994 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.3%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1585 SAMTools SNP 96470 96470 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1585 SAMTools SNP 96863 96863 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1585 SAMTools SNP 97670 97670 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C197:79 scaffold1585 SAMTools SNP 97770 97770 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 97775 97775 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 98259 98259 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold1585 SAMTools SNP 98304 98304 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.58%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C174:99 scaffold1585 SAMTools SNP 98559 98559 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1585 SAMTools SNP 101591 101591 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold1585 SAMTools SNP 103369 103369 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1585 SAMTools SNP 103402 103402 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1585 SAMTools SNP 103648 103648 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1585 SAMTools SNP 103658 103658 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.015%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1585 SAMTools SNP 104118 104118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 104165 104165 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1585 SAMTools SNP 104208 104208 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 105690 105690 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1585 SAMTools SNP 105705 105705 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1585 SAMTools SNP 105761 105761 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1585 SAMTools SNP 106593 106593 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1585 SAMTools SNP 109762 109762 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1585 SAMTools SNP 131498 131498 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 131726 131726 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 131746 131746 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 156668 156668 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C203:99 scaffold1585 SAMTools SNP 156695 156695 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.33%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C245:99 scaffold1585 SAMTools SNP 157099 157099 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1585 SAMTools SNP 157787 157787 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold1585 SAMTools SNP 165498 165498 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1585 SAMTools SNP 166584 166584 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C168:99 scaffold1585 SAMTools SNP 184930 184930 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1585 SAMTools SNP 184958 184958 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1585 SAMTools SNP 185047 185047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1585 SAMTools SNP 186323 186323 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1585 SAMTools SNP 187767 187767 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1585 SAMTools SNP 188467 188467 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1585 SAMTools SNP 191489 191489 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1585 SAMTools SNP 191498 191498 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1585 SAMTools SNP 193370 193370 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1585 SAMTools SNP 198681 198681 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 198729 198729 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1585 SAMTools SNP 199336 199336 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 199600 199600 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold1585 SAMTools SNP 201433 201433 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1585 SAMTools SNP 203650 203650 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.38%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1585 SAMTools SNP 203699 203699 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1585 SAMTools SNP 205004 205004 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C0.31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C88:74 scaffold1585 SAMTools SNP 206352 206352 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1585 SAMTools SNP 207649 207649 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold1585 SAMTools SNP 208097 208097 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1585 SAMTools SNP 208162 208162 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 209942 209942 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1585 SAMTools SNP 215076 215076 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 220552 220552 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C9%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1585 SAMTools SNP 220555 220555 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.043%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1585 SAMTools SNP 220597 220597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C54%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1585 SAMTools SNP 221379 221379 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 221595 221595 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 221643 221643 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1585 SAMTools SNP 222414 222414 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 223009 223009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D47%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1585 SAMTools SNP 223586 223586 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1585 SAMTools SNP 223655 223655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1585 SAMTools SNP 223804 223804 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1585 SAMTools SNP 223853 223853 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1585 SAMTools SNP 224116 224116 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1585 SAMTools SNP 224118 224118 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.2%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1585 SAMTools SNP 224129 224129 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1585 SAMTools SNP 224347 224347 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1585 SAMTools SNP 224365 224365 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1585 SAMTools SNP 224476 224476 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1585 SAMTools SNP 224515 224515 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1585 SAMTools SNP 225985 225985 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 226329 226329 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1585 SAMTools SNP 226341 226341 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1585 SAMTools SNP 226366 226366 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1585 SAMTools SNP 226396 226396 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.14%2C0.052%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C108:99 scaffold1585 SAMTools SNP 226719 226719 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C221:99 scaffold1585 SAMTools SNP 226732 226732 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1585 SAMTools SNP 227236 227236 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1585 SAMTools SNP 227278 227278 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1585 SAMTools SNP 227302 227302 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C114%2C0:99 scaffold1585 SAMTools SNP 227425 227425 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1585 SAMTools SNP 227595 227595 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1585 SAMTools SNP 227613 227613 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1585 SAMTools SNP 227640 227640 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1585 SAMTools SNP 227792 227792 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1585 SAMTools SNP 227838 227838 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1585 SAMTools SNP 227880 227880 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1585 SAMTools SNP 227895 227895 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1585 SAMTools SNP 228094 228094 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0036%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C221:39 scaffold1585 SAMTools SNP 228649 228649 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1585 SAMTools SNP 228961 228961 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1585 SAMTools SNP 262518 262518 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1585 SAMTools SNP 270049 270049 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1585 SAMTools SNP 282893 282893 57.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold1585 SAMTools SNP 310910 310910 31.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1585 SAMTools SNP 310955 310955 40.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1585 SAMTools SNP 327024 327024 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1585 SAMTools SNP 327471 327471 22.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1585 SAMTools SNP 327636 327636 47.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1586 SAMTools SNP 30661 30661 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 30669 30669 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 30769 30769 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 30829 30829 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 37848 37848 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1586 SAMTools SNP 38801 38801 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1586 SAMTools SNP 38832 38832 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1586 SAMTools SNP 38840 38840 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.00034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1586 SAMTools SNP 39120 39120 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1586 SAMTools SNP 40638 40638 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1586 SAMTools SNP 64045 64045 17.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold1586 SAMTools SNP 64083 64083 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 88820 88820 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1586 SAMTools SNP 88854 88854 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1586 SAMTools SNP 127451 127451 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1586 SAMTools SNP 128521 128521 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C48%2C5%3BMQ%3D50%3BFQ%3D-113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C86%2C0:99 scaffold1586 SAMTools SNP 129096 129096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1586 SAMTools SNP 129695 129695 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C0.21%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C196:93 scaffold1586 SAMTools SNP 131531 131531 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1586 SAMTools SNP 131543 131543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C32%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.56%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold1586 SAMTools SNP 132202 132202 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1586 SAMTools SNP 134096 134096 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C5%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.072%2C0.38%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1586 SAMTools SNP 134144 134144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1586 SAMTools SNP 135180 135180 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1586 SAMTools SNP 137639 137639 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1586 SAMTools SNP 142890 142890 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1586 SAMTools SNP 143144 143144 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1586 SAMTools SNP 143225 143225 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C41:44 scaffold1586 SAMTools SNP 143339 143339 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 145254 145254 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 145278 145278 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1586 SAMTools SNP 145724 145724 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.058%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1586 SAMTools SNP 145784 145784 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1586 SAMTools SNP 146532 146532 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1586 SAMTools SNP 146562 146562 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1586 SAMTools SNP 146595 146595 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold1586 SAMTools SNP 147943 147943 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 147957 147957 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1586 SAMTools SNP 149332 149332 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1586 SAMTools SNP 149389 149389 75.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold1586 SAMTools SNP 149964 149964 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1586 SAMTools SNP 149991 149991 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C9%2C0:16 scaffold1588 SAMTools SNP 57269 57269 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 57270 57270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 60755 60755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1588 SAMTools SNP 60833 60833 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0027%2C7.5e-09%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1588 SAMTools SNP 67433 67433 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1588 SAMTools SNP 68792 68792 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1588 SAMTools SNP 70275 70275 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C30%2C0:57 scaffold1588 SAMTools SNP 72600 72600 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1588 SAMTools SNP 77730 77730 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C253:31 scaffold1588 SAMTools SNP 77974 77974 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.13%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1588 SAMTools SNP 86879 86879 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C99%2C0:99 scaffold1588 SAMTools SNP 88158 88158 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1588 SAMTools SNP 90779 90779 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1588 SAMTools SNP 90780 90780 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1588 SAMTools SNP 98193 98193 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0015%2C3.4e-09%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1588 SAMTools SNP 100255 100255 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.081%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1588 SAMTools SNP 102150 102150 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1588 SAMTools SNP 102180 102180 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.33%2C0.027%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold1588 SAMTools SNP 107755 107755 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1588 SAMTools SNP 139527 139527 15.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1588 SAMTools SNP 139889 139889 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C16%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1.4e-38%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C233:88 scaffold1588 SAMTools SNP 173509 173509 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 174200 174200 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1588 SAMTools SNP 174591 174591 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 174675 174675 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1588 SAMTools SNP 175984 175984 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 176709 176709 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1588 SAMTools SNP 176738 176738 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1588 SAMTools SNP 177101 177101 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1588 SAMTools SNP 178808 178808 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 179351 179351 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1588 SAMTools SNP 179571 179571 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1588 SAMTools SNP 179592 179592 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1588 SAMTools SNP 181015 181015 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 181197 181197 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 181936 181936 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1588 SAMTools SNP 196460 196460 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C71:40 scaffold1588 SAMTools SNP 201603 201603 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.031%2C1%2C1%2C5.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1588 SAMTools SNP 206240 206240 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C12%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1588 SAMTools SNP 212713 212713 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C59%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1588 SAMTools SNP 213192 213192 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 245069 245069 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1588 SAMTools SNP 245078 245078 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 246997 246997 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1588 SAMTools SNP 247009 247009 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1588 SAMTools SNP 248515 248515 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold1588 SAMTools SNP 250954 250954 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1588 SAMTools SNP 251011 251011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1588 SAMTools SNP 252632 252632 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1588 SAMTools SNP 252743 252743 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1588 SAMTools SNP 255035 255035 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1588 SAMTools SNP 255173 255173 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.58%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C42:33 scaffold1588 SAMTools SNP 256375 256375 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1588 SAMTools SNP 257942 257942 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 260714 260714 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1588 SAMTools SNP 260772 260772 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1588 SAMTools SNP 261147 261147 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1588 SAMTools SNP 261689 261689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1588 SAMTools SNP 262283 262283 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1588 SAMTools SNP 262305 262305 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1588 SAMTools SNP 262517 262517 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1588 SAMTools SNP 266705 266705 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.026%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1588 SAMTools SNP 266722 266722 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1588 SAMTools SNP 267017 267017 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold1588 SAMTools SNP 267758 267758 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1588 SAMTools SNP 268793 268793 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1588 SAMTools SNP 277491 277491 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1588 SAMTools SNP 294664 294664 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.044%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1588 SAMTools SNP 294930 294930 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1588 SAMTools SNP 316205 316205 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1589 SAMTools SNP 5173 5173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 6037 6037 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 6064 6064 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C19:39 scaffold1589 SAMTools SNP 6359 6359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1589 SAMTools SNP 6422 6422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1589 SAMTools SNP 9450 9450 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1589 SAMTools SNP 9537 9537 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.67%2C0.039%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1589 SAMTools SNP 12421 12421 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.24%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1589 SAMTools SNP 13036 13036 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 13099 13099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 13111 13111 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 13920 13920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C40%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1589 SAMTools SNP 14010 14010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.066%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 15058 15058 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 17474 17474 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1589 SAMTools SNP 17625 17625 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.49%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1589 SAMTools SNP 17986 17986 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1589 SAMTools SNP 18509 18509 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 20312 20312 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.62%2C1.5e-28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C148:99 scaffold1589 SAMTools SNP 20444 20444 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1589 SAMTools SNP 20815 20815 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C197:99 scaffold1589 SAMTools SNP 21283 21283 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 21288 21288 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1589 SAMTools SNP 21836 21836 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 21854 21854 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C77:80 scaffold1589 SAMTools SNP 21862 21862 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1589 SAMTools SNP 22081 22081 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1589 SAMTools SNP 22532 22532 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1589 SAMTools SNP 23087 23087 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1589 SAMTools SNP 23103 23103 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1589 SAMTools SNP 23883 23883 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1589 SAMTools SNP 23909 23909 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 23938 23938 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1589 SAMTools SNP 23941 23941 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 24590 24590 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1589 SAMTools SNP 24591 24591 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1589 SAMTools SNP 24655 24655 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1589 SAMTools SNP 25180 25180 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1589 SAMTools SNP 25198 25198 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 25330 25330 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1589 SAMTools SNP 25640 25640 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1589 SAMTools SNP 25645 25645 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1589 SAMTools SNP 26900 26900 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1589 SAMTools SNP 26909 26909 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1589 SAMTools SNP 26910 26910 55.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1589 SAMTools SNP 27217 27217 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1589 SAMTools SNP 27252 27252 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1589 SAMTools SNP 29374 29374 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1589 SAMTools SNP 31294 31294 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 31299 31299 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1589 SAMTools SNP 31339 31339 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1589 SAMTools SNP 31381 31381 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1589 SAMTools SNP 31656 31656 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1589 SAMTools SNP 31683 31683 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C3.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C227:99 scaffold1589 SAMTools SNP 32437 32437 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1589 SAMTools SNP 32528 32528 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1589 SAMTools SNP 32826 32826 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1589 SAMTools SNP 32842 32842 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C175:39 scaffold1589 SAMTools SNP 32844 32844 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C0.038%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C245:56 scaffold1589 SAMTools SNP 35365 35365 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C14%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.00058%2C1%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1589 SAMTools SNP 37844 37844 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C44%2C9%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.27%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1589 SAMTools SNP 41725 41725 72.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold1589 SAMTools SNP 42136 42136 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0038%2C4.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1589 SAMTools SNP 42291 42291 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1589 SAMTools SNP 42782 42782 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1589 SAMTools SNP 63154 63154 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C11%2C1%3BMQ%3D48%3BFQ%3D38%3BPV4%3D1%2C8.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C231:68 scaffold1589 SAMTools SNP 66334 66334 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C8.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C205:99 scaffold1589 SAMTools SNP 66571 66571 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C27%2C0:48 scaffold1589 SAMTools SNP 67772 67772 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1589 SAMTools SNP 68167 68167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C21%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 68187 68187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C35%2C27%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 69293 69293 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1589 SAMTools SNP 70008 70008 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1589 SAMTools SNP 70053 70053 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1589 SAMTools SNP 70519 70519 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold1589 SAMTools SNP 70775 70775 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C30%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.47%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1589 SAMTools SNP 70784 70784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 70802 70802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1589 SAMTools SNP 71762 71762 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1589 SAMTools SNP 71792 71792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1589 SAMTools SNP 72802 72802 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0048%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1589 SAMTools SNP 72854 72854 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.086%2C0.0069%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1589 SAMTools SNP 73962 73962 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.64%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1589 SAMTools SNP 74396 74396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 74412 74412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 74702 74702 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1589 SAMTools SNP 79646 79646 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C39%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 79992 79992 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C19%2C16%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.017%2C0.00021%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1589 SAMTools SNP 80698 80698 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C50%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 92834 92834 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C3%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1589 SAMTools SNP 92870 92870 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C24%2C105%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 93074 93074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C23%2C61%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 93077 93077 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C23%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.15%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 93218 93218 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 93500 93500 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 93871 93871 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C4%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 93958 93958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C41%2C21%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 98853 98853 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.55%2C0.35%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1589 SAMTools SNP 98973 98973 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.68%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1589 SAMTools SNP 99021 99021 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C34%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.46%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1589 SAMTools SNP 99144 99144 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.022%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1589 SAMTools SNP 99308 99308 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 99527 99527 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C17%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1589 SAMTools SNP 101006 101006 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1589 SAMTools SNP 101444 101444 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C53%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1589 SAMTools SNP 104056 104056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1589 SAMTools SNP 106663 106663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 106819 106819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 106929 106929 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C31%2C2%2C14%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.00074%2C1%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1589 SAMTools SNP 106930 106930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C45%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 106951 106951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C37%2C21%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 108114 108114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 108295 108295 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C60%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1589 SAMTools SNP 108361 108361 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C30%2C1%2C9%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00078%2C1%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1589 SAMTools SNP 108682 108682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 108690 108690 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C56%2C5%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1589 SAMTools SNP 108746 108746 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1589 SAMTools SNP 108752 108752 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C15%2C22%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D0.51%2C4.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold1589 SAMTools SNP 111132 111132 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1589 SAMTools SNP 117985 117985 56.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold1589 SAMTools SNP 118021 118021 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1589 SAMTools SNP 121409 121409 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C86:41 scaffold1589 SAMTools SNP 122273 122273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1589 SAMTools SNP 122754 122754 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1589 SAMTools SNP 123546 123546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C16%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1589 SAMTools SNP 123906 123906 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C206:72 scaffold1589 SAMTools SNP 123923 123923 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1589 SAMTools SNP 124573 124573 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1589 SAMTools SNP 125032 125032 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C242:99 scaffold1589 SAMTools SNP 125094 125094 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1589 SAMTools SNP 134969 134969 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 310970 310970 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 311497 311497 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 311623 311623 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 314822 314822 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1589 SAMTools SNP 315321 315321 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1589 SAMTools SNP 315327 315327 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C213:99 scaffold1589 SAMTools SNP 315399 315399 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C63%2C0:99 scaffold1589 SAMTools SNP 315775 315775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 315814 315814 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 316242 316242 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1589 SAMTools SNP 316770 316770 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0098%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1589 SAMTools SNP 317350 317350 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 317385 317385 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C215:99 scaffold1589 SAMTools SNP 317394 317394 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1589 SAMTools SNP 317644 317644 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.025%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1589 SAMTools SNP 317671 317671 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1589 SAMTools SNP 318086 318086 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1589 SAMTools SNP 318122 318122 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 318178 318178 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 318233 318233 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 318572 318572 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 318614 318614 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1589 SAMTools SNP 319127 319127 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1589 SAMTools SNP 319595 319595 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 319598 319598 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold1589 SAMTools SNP 319697 319697 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 319727 319727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1589 SAMTools SNP 321527 321527 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1589 SAMTools SNP 321768 321768 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 322047 322047 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 322746 322746 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1589 SAMTools SNP 322794 322794 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold1589 SAMTools SNP 322824 322824 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.45%2C5.5e-15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C247:99 scaffold1589 SAMTools SNP 322884 322884 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 324393 324393 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1589 SAMTools SNP 324402 324402 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1589 SAMTools SNP 324791 324791 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1589 SAMTools SNP 325105 325105 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C9%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1589 SAMTools SNP 325414 325414 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1589 SAMTools SNP 326100 326100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 326699 326699 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1589 SAMTools SNP 326750 326750 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.4%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1589 SAMTools SNP 326804 326804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1589 SAMTools SNP 327300 327300 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D38.5%3BPV4%3D1%2C0.00013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C69:68 scaffold1589 SAMTools SNP 327351 327351 36.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1589 SAMTools SNP 330778 330778 7.39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1589 SAMTools SNP 334210 334210 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C2%2C26%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C7.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1589 SAMTools SNP 334570 334570 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1589 SAMTools SNP 334579 334579 55.8 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1589 SAMTools SNP 334618 334618 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1589 SAMTools SNP 335077 335077 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D165%3BPV4%3D8.8e-05%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1589 SAMTools SNP 335119 335119 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 335212 335212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 335215 335215 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 335233 335233 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 339993 339993 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.15%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 340583 340583 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1589 SAMTools SNP 340628 340628 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1589 SAMTools SNP 340693 340693 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1589 SAMTools SNP 342671 342671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C27%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold1589 SAMTools SNP 342717 342717 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.49%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1589 SAMTools SNP 342746 342746 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1589 SAMTools SNP 342755 342755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1589 SAMTools SNP 342767 342767 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.19%2C1%2C2.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C221:49 scaffold1589 SAMTools SNP 343844 343844 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C1%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.25%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1589 SAMTools SNP 343877 343877 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C13%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.41%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1589 SAMTools SNP 343904 343904 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.023%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C153:46 scaffold1589 SAMTools SNP 343981 343981 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1589 SAMTools SNP 353654 353654 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C12%2C61%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.48%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 356767 356767 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C30%2C0:57 scaffold1589 SAMTools SNP 357116 357116 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1589 SAMTools SNP 357186 357186 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C75%2C0:99 scaffold1589 SAMTools SNP 357378 357378 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1589 SAMTools SNP 357816 357816 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.032%2C0.087%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C238:99 scaffold1589 SAMTools SNP 357860 357860 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.19%2C0.36%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C212:99 scaffold1589 SAMTools SNP 357866 357866 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C214:99 scaffold1589 SAMTools SNP 357890 357890 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.44%2C0.00085%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C139:59 scaffold1589 SAMTools SNP 357956 357956 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1589 SAMTools SNP 357965 357965 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1589 SAMTools SNP 357983 357983 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0027%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1589 SAMTools SNP 358716 358716 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1589 SAMTools SNP 359192 359192 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 359656 359656 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.058%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C110:60 scaffold1589 SAMTools SNP 359668 359668 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1589 SAMTools SNP 359680 359680 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1589 SAMTools SNP 359689 359689 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1589 SAMTools SNP 359741 359741 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1589 SAMTools SNP 360744 360744 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1589 SAMTools SNP 360790 360790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1589 SAMTools SNP 361265 361265 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1589 SAMTools SNP 361291 361291 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1589 SAMTools SNP 361309 361309 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1589 SAMTools SNP 362113 362113 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 390137 390137 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.38%2C7.9e-06%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C161:68 scaffold1589 SAMTools SNP 393257 393257 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1589 SAMTools SNP 396832 396832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C1%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1589 SAMTools SNP 397780 397780 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C40%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1589 SAMTools SNP 397807 397807 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C48%2C28%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C6.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 399534 399534 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.28%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1589 SAMTools SNP 399679 399679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C93%2C26%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 401927 401927 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 402285 402285 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C54%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1589 SAMTools SNP 402480 402480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 403419 403419 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1589 SAMTools SNP 403455 403455 83.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold1589 SAMTools SNP 405186 405186 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C11%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 405195 405195 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 405852 405852 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 405909 405909 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1589 SAMTools SNP 406008 406008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 407270 407270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 407690 407690 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 407738 407738 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C58%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1589 SAMTools SNP 410189 410189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C18%3BMQ%3D48%3BFQ%3D-79%3BPV4%3D0.42%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold1589 SAMTools SNP 410192 410192 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C9%2C1%3BMQ%3D48%3BFQ%3D24%3BPV4%3D0.00028%2C2.5e-07%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1589 SAMTools SNP 410246 410246 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C46%2C26%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 418441 418441 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C26%2C27%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-08%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 421573 421573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1589 SAMTools SNP 424502 424502 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1589 SAMTools SNP 437928 437928 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1589 SAMTools SNP 438117 438117 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 438210 438210 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1589 SAMTools SNP 464963 464963 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1589 SAMTools SNP 465468 465468 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1589 SAMTools SNP 466064 466064 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1589 SAMTools SNP 466087 466087 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C7.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1589 SAMTools SNP 466354 466354 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1589 SAMTools SNP 466366 466366 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.063%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1589 SAMTools SNP 467191 467191 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1589 SAMTools SNP 467572 467572 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1589 SAMTools SNP 467784 467784 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 467844 467844 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 467877 467877 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold1589 SAMTools SNP 467889 467889 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1589 SAMTools SNP 468602 468602 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold1589 SAMTools SNP 469248 469248 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1589 SAMTools SNP 471209 471209 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1589 SAMTools SNP 471239 471239 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1589 SAMTools SNP 471278 471278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1589 SAMTools SNP 471532 471532 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1589 SAMTools SNP 471537 471537 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C180:99 scaffold1589 SAMTools SNP 471666 471666 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1589 SAMTools SNP 471963 471963 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1589 SAMTools SNP 471987 471987 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1589 SAMTools SNP 472142 472142 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1589 SAMTools SNP 472150 472150 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 472453 472453 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1589 SAMTools SNP 472465 472465 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1589 SAMTools SNP 473040 473040 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1589 SAMTools SNP 473861 473861 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C203:63 scaffold1589 SAMTools SNP 473936 473936 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D39.6%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C77:70 scaffold1589 SAMTools SNP 475224 475224 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C67:70 scaffold1589 SAMTools SNP 475272 475272 199 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23%2C244%2C0%2C241:45 scaffold1589 SAMTools SNP 475575 475575 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.25%2C0.034%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C177:66 scaffold1589 SAMTools SNP 476034 476034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1589 SAMTools SNP 476052 476052 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.082%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1589 SAMTools SNP 476269 476269 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1589 SAMTools SNP 476831 476831 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1589 SAMTools SNP 476833 476833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1589 SAMTools SNP 479112 479112 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 479866 479866 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 479960 479960 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1589 SAMTools SNP 480013 480013 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1589 SAMTools SNP 483221 483221 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1589 SAMTools SNP 484495 484495 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.35%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1589 SAMTools SNP 484537 484537 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 488288 488288 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 488300 488300 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1589 SAMTools SNP 488659 488659 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1589 SAMTools SNP 488731 488731 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.24%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1589 SAMTools SNP 490829 490829 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 490851 490851 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1589 SAMTools SNP 491557 491557 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 491592 491592 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1589 SAMTools SNP 491607 491607 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.53%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1589 SAMTools SNP 491971 491971 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.46%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 492949 492949 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C0%2C17%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1589 SAMTools SNP 492970 492970 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C0%2C14%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C234:99 scaffold1589 SAMTools SNP 501853 501853 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1589 SAMTools SNP 544375 544375 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1589 SAMTools SNP 556506 556506 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 557018 557018 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1589 SAMTools SNP 557072 557072 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1589 SAMTools SNP 559406 559406 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 560016 560016 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 560073 560073 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1589 SAMTools SNP 561354 561354 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1589 SAMTools SNP 561390 561390 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 561402 561402 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 566247 566247 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1589 SAMTools SNP 566298 566298 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1589 SAMTools SNP 566461 566461 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1589 SAMTools SNP 566574 566574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 568420 568420 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1589 SAMTools SNP 570071 570071 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.43%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1589 SAMTools SNP 570461 570461 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold1589 SAMTools SNP 572314 572314 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.43%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C132:47 scaffold1589 SAMTools SNP 572492 572492 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.25%2C8.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C76:47 scaffold1589 SAMTools SNP 572681 572681 32.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1589 SAMTools SNP 576946 576946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1589 SAMTools SNP 578810 578810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 578886 578886 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.26%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1589 SAMTools SNP 579325 579325 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.57%2C2.3e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1589 SAMTools SNP 580496 580496 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.023%2C1.8e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1589 SAMTools SNP 580579 580579 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C2e-18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C207:64 scaffold1589 SAMTools SNP 580708 580708 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.58%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1589 SAMTools SNP 581544 581544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 581577 581577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 583198 583198 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C11%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C4.8e-26%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold1589 SAMTools SNP 583822 583822 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C69%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C7.1e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C210:80 scaffold1589 SAMTools SNP 584147 584147 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C15%2C12%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.1%2C1.7e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1589 SAMTools SNP 584251 584251 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C6%2C13%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.062%2C9.2e-32%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1589 SAMTools SNP 584344 584344 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C36%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C2.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 584356 584356 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1589 SAMTools SNP 584613 584613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C38%2C2%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 584661 584661 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C8%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C208%2C0:99 scaffold1589 SAMTools SNP 584951 584951 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.3%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C100:66 scaffold1589 SAMTools SNP 595934 595934 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1589 SAMTools SNP 597058 597058 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1589 SAMTools SNP 603847 603847 74 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C78%2C0%2C108%2C65%2C105:99 scaffold1589 SAMTools SNP 603924 603924 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C236:89 scaffold1589 SAMTools SNP 605505 605505 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1589 SAMTools SNP 605697 605697 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1589 SAMTools SNP 605700 605700 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1589 SAMTools SNP 606294 606294 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 606334 606334 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 607448 607448 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C123%2C0:99 scaffold1589 SAMTools SNP 607589 607589 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1589 SAMTools SNP 607625 607625 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1589 SAMTools SNP 609036 609036 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1589 SAMTools SNP 609045 609045 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 609069 609069 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1589 SAMTools SNP 611828 611828 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1589 SAMTools SNP 612741 612741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1589 SAMTools SNP 612768 612768 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C6%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1589 SAMTools SNP 616381 616381 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1589 SAMTools SNP 627210 627210 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D0.33%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C41:37 scaffold1589 SAMTools SNP 627756 627756 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C20%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.1e-57%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1589 SAMTools SNP 627987 627987 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C187%2C0:99 scaffold1589 SAMTools SNP 630093 630093 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.2%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 635286 635286 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C2%2C16%3BMQ%3D49%3BFQ%3D218%3BPV4%3D0.02%2C1.8e-07%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1589 SAMTools SNP 635287 635287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C45%3BMQ%3D49%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1589 SAMTools SNP 636711 636711 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1589 SAMTools SNP 637672 637672 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C255%2C0:99 scaffold1589 SAMTools SNP 638382 638382 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold1589 SAMTools SNP 638786 638786 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C232:99 scaffold1589 SAMTools SNP 638792 638792 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C25%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.24%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C189:99 scaffold1589 SAMTools SNP 638819 638819 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 646238 646238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1589 SAMTools SNP 646261 646261 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1589 SAMTools SNP 646303 646303 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1589 SAMTools SNP 646499 646499 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C57%2C0:89 scaffold1589 SAMTools SNP 675153 675153 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C54%2C0:99 scaffold1589 SAMTools SNP 675284 675284 208 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14%2C223%2C0%2C220:63 scaffold1589 SAMTools SNP 676074 676074 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1589 SAMTools SNP 676353 676353 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C146:99 scaffold1589 SAMTools SNP 676753 676753 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1589 SAMTools SNP 676826 676826 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0067%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C160:50 scaffold1589 SAMTools SNP 677116 677116 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold1589 SAMTools SNP 678051 678051 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 678080 678080 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1589 SAMTools SNP 683942 683942 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1589 SAMTools SNP 683983 683983 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1589 SAMTools SNP 685817 685817 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 685838 685838 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 686808 686808 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1589 SAMTools SNP 701453 701453 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1589 SAMTools SNP 703083 703083 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1589 SAMTools SNP 706582 706582 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1589 SAMTools SNP 707413 707413 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 707660 707660 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1589 SAMTools SNP 712953 712953 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 714781 714781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1589 SAMTools SNP 715236 715236 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1589 SAMTools SNP 715314 715314 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1589 SAMTools SNP 716037 716037 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1589 SAMTools SNP 716109 716109 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1589 SAMTools SNP 716121 716121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1589 SAMTools SNP 718148 718148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1589 SAMTools SNP 718316 718316 73 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C39%2C0%2C96%2C18%2C93:75 scaffold1589 SAMTools SNP 718506 718506 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C104:42 scaffold1589 SAMTools SNP 719395 719395 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.00013%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1589 SAMTools SNP 719765 719765 39.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1589 SAMTools SNP 765613 765613 17.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1589 SAMTools SNP 767075 767075 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1589 SAMTools SNP 777018 777018 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1589 SAMTools SNP 781340 781340 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D44%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C161:99 scaffold1589 SAMTools SNP 781553 781553 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C190:99 scaffold1589 SAMTools SNP 781590 781590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 782291 782291 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1589 SAMTools SNP 782316 782316 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1589 SAMTools SNP 782584 782584 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1589 SAMTools SNP 782615 782615 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.19%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C124:99 scaffold1589 SAMTools SNP 784195 784195 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1589 SAMTools SNP 855150 855150 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1589 SAMTools SNP 855853 855853 46.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1589 SAMTools SNP 856049 856049 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold1589 SAMTools SNP 866317 866317 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1589 SAMTools SNP 876677 876677 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1589 SAMTools SNP 888369 888369 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1589 SAMTools SNP 888438 888438 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1589 SAMTools SNP 888462 888462 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1589 SAMTools SNP 889207 889207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 889584 889584 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1589 SAMTools SNP 889656 889656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 890095 890095 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C17%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1589 SAMTools SNP 890105 890105 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C17%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1589 SAMTools SNP 890900 890900 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C11%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.028%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 890954 890954 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C50%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 891207 891207 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 891315 891315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C18%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.064%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1589 SAMTools SNP 891803 891803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 892728 892728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C149%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1589 SAMTools SNP 893065 893065 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C21%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1589 SAMTools SNP 894562 894562 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold1589 SAMTools SNP 895100 895100 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C122:39 scaffold1589 SAMTools SNP 895815 895815 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1589 SAMTools SNP 895906 895906 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C71:33 scaffold1590 SAMTools SNP 14560 14560 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 18008 18008 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 75330 75330 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D0.33%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1590 SAMTools SNP 95952 95952 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C8%2C27%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.036%2C2.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1590 SAMTools SNP 103734 103734 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold1590 SAMTools SNP 108101 108101 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1590 SAMTools SNP 110948 110948 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 110969 110969 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 111006 111006 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1590 SAMTools SNP 112237 112237 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 112574 112574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 112615 112615 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 113029 113029 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 119084 119084 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1590 SAMTools SNP 120858 120858 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1590 SAMTools SNP 120955 120955 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1592 SAMTools SNP 17182 17182 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1592 SAMTools SNP 17426 17426 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1592 SAMTools SNP 22027 22027 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 22048 22048 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 22812 22812 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 22857 22857 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 22872 22872 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1592 SAMTools SNP 22878 22878 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1592 SAMTools SNP 24993 24993 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1592 SAMTools SNP 25023 25023 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C196:99 scaffold1592 SAMTools SNP 26581 26581 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C5%2C23%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.02%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1592 SAMTools SNP 26605 26605 220 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C29%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C248:99 scaffold1592 SAMTools SNP 26614 26614 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1592 SAMTools SNP 27144 27144 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1592 SAMTools SNP 28121 28121 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1592 SAMTools SNP 28217 28217 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D53.8%3BPV4%3D0.19%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C95:84 scaffold1592 SAMTools SNP 28289 28289 46.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1592 SAMTools SNP 28559 28559 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C33%2C0:63 scaffold1592 SAMTools SNP 28598 28598 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.071%2C3.6e-13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C123:99 scaffold1592 SAMTools SNP 28697 28697 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.044%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C116:87 scaffold1592 SAMTools SNP 28826 28826 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C6.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C193:41 scaffold1592 SAMTools SNP 31275 31275 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1592 SAMTools SNP 32444 32444 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1592 SAMTools SNP 33627 33627 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1592 SAMTools SNP 33793 33793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1592 SAMTools SNP 33805 33805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1592 SAMTools SNP 34530 34530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1592 SAMTools SNP 34572 34572 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C66%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1592 SAMTools SNP 35157 35157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1592 SAMTools SNP 35160 35160 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1592 SAMTools SNP 35515 35515 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold1592 SAMTools SNP 35544 35544 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1592 SAMTools SNP 35577 35577 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1592 SAMTools SNP 36054 36054 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1592 SAMTools SNP 36106 36106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1592 SAMTools SNP 36118 36118 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C254:36 scaffold1592 SAMTools SNP 37493 37493 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D25%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1592 SAMTools SNP 38004 38004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1592 SAMTools SNP 38314 38314 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1592 SAMTools SNP 38344 38344 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1592 SAMTools SNP 38351 38351 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1592 SAMTools SNP 42464 42464 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 42500 42500 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1592 SAMTools SNP 42512 42512 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1592 SAMTools SNP 42849 42849 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold1592 SAMTools SNP 43681 43681 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold1592 SAMTools SNP 44023 44023 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1592 SAMTools SNP 45816 45816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 46252 46252 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1592 SAMTools SNP 46261 46261 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1592 SAMTools SNP 46291 46291 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1592 SAMTools SNP 46321 46321 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0055%2C1%2C1%2C9.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1592 SAMTools SNP 46342 46342 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C15%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1592 SAMTools SNP 46807 46807 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1.8e-05%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1592 SAMTools SNP 47232 47232 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C2.5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold1592 SAMTools SNP 47277 47277 217 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5%2C230%2C0%2C227:81 scaffold1592 SAMTools SNP 51159 51159 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1592 SAMTools SNP 51160 51160 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1592 SAMTools SNP 52364 52364 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1592 SAMTools SNP 52776 52776 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1592 SAMTools SNP 56429 56429 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1592 SAMTools SNP 56439 56439 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1592 SAMTools SNP 56492 56492 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 56785 56785 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 61003 61003 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 62049 62049 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1592 SAMTools SNP 62062 62062 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1592 SAMTools SNP 62742 62742 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1592 SAMTools SNP 63302 63302 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 68435 68435 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 92597 92597 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1592 SAMTools SNP 102978 102978 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1592 SAMTools SNP 103786 103786 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1592 SAMTools SNP 103803 103803 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1592 SAMTools SNP 104148 104148 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C42%2C0:71 scaffold1592 SAMTools SNP 104970 104970 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1592 SAMTools SNP 105859 105859 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1592 SAMTools SNP 106917 106917 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1592 SAMTools SNP 109625 109625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1592 SAMTools SNP 109652 109652 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C121:99 scaffold1592 SAMTools SNP 109727 109727 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.28%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1592 SAMTools SNP 109763 109763 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1592 SAMTools SNP 110062 110062 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1592 SAMTools SNP 112316 112316 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1592 SAMTools SNP 114069 114069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1592 SAMTools SNP 135906 135906 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1592 SAMTools SNP 145216 145216 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C218:56 scaffold1592 SAMTools SNP 145917 145917 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C218:43 scaffold1592 SAMTools SNP 148693 148693 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C183:69 scaffold1592 SAMTools SNP 148700 148700 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.11%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1592 SAMTools SNP 148908 148908 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.11%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1592 SAMTools SNP 149075 149075 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1592 SAMTools SNP 149111 149111 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1592 SAMTools SNP 149609 149609 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.42%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1592 SAMTools SNP 149620 149620 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C5%2C2%3BMQ%3D48%3BFQ%3D84%3BPV4%3D0.56%2C1%2C0.0028%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1592 SAMTools SNP 153530 153530 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1592 SAMTools SNP 153535 153535 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1592 SAMTools SNP 153637 153637 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1592 SAMTools SNP 153663 153663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1592 SAMTools SNP 153973 153973 34.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1592 SAMTools SNP 154109 154109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1592 SAMTools SNP 155056 155056 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C213:59 scaffold1597 SAMTools SNP 14670 14670 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 33922 33922 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 34416 34416 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C19%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 35129 35129 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C35%2C0%2C21%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1.5e-09%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1597 SAMTools SNP 35185 35185 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C94%2C0%2C26%3BMQ%3D49%3BFQ%3D64%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1597 SAMTools SNP 58971 58971 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 58973 58973 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 69256 69256 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.14%2C0.35%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1597 SAMTools SNP 79286 79286 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1597 SAMTools SNP 79304 79304 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1597 SAMTools SNP 79326 79326 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1597 SAMTools SNP 80612 80612 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1597 SAMTools SNP 81671 81671 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.36%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 87051 87051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1597 SAMTools SNP 87060 87060 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.39%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1597 SAMTools SNP 87070 87070 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1597 SAMTools SNP 87217 87217 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C27%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.15%2C0.39%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1597 SAMTools SNP 87268 87268 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 87751 87751 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C14%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C247:99 scaffold1597 SAMTools SNP 87754 87754 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C10%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C242:99 scaffold1597 SAMTools SNP 94132 94132 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1597 SAMTools SNP 94474 94474 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1597 SAMTools SNP 94498 94498 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 94522 94522 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1597 SAMTools SNP 96705 96705 68.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold1597 SAMTools SNP 100048 100048 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1597 SAMTools SNP 102400 102400 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C30%2C0:57 scaffold1597 SAMTools SNP 103037 103037 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold1597 SAMTools SNP 103204 103204 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 103218 103218 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1597 SAMTools SNP 103912 103912 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C184:99 scaffold1597 SAMTools SNP 104051 104051 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.019%2C8.1e-11%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1597 SAMTools SNP 106840 106840 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1597 SAMTools SNP 106846 106846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 106879 106879 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1597 SAMTools SNP 106948 106948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1597 SAMTools SNP 108831 108831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1597 SAMTools SNP 108989 108989 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C10%3BMQ%3D31%3BFQ%3D49%3BPV4%3D1%2C3.9e-05%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C190:79 scaffold1597 SAMTools SNP 112274 112274 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C151%2C0:99 scaffold1597 SAMTools SNP 112795 112795 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C18%2C0:33 scaffold1597 SAMTools SNP 112978 112978 86.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.041%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C6:9 scaffold1597 SAMTools SNP 113495 113495 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1597 SAMTools SNP 114062 114062 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1597 SAMTools SNP 114173 114173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 114244 114244 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C188:99 scaffold1597 SAMTools SNP 114508 114508 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1597 SAMTools SNP 119702 119702 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1597 SAMTools SNP 192125 192125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 192148 192148 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1597 SAMTools SNP 194370 194370 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1597 SAMTools SNP 216108 216108 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1597 SAMTools SNP 221672 221672 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C4.4e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C124:94 scaffold1597 SAMTools SNP 221969 221969 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1597 SAMTools SNP 221987 221987 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1597 SAMTools SNP 223394 223394 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D0.25%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold1597 SAMTools SNP 223434 223434 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1597 SAMTools SNP 224026 224026 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1597 SAMTools SNP 224341 224341 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1597 SAMTools SNP 242369 242369 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1597 SAMTools SNP 255907 255907 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1597 SAMTools SNP 269997 269997 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1597 SAMTools SNP 272117 272117 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1597 SAMTools SNP 272915 272915 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C78%2C0:99 scaffold1597 SAMTools SNP 273467 273467 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C87%2C0:99 scaffold1597 SAMTools SNP 273854 273854 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1598 SAMTools SNP 4464 4464 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D15%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C66%2C0:99 scaffold1598 SAMTools SNP 8243 8243 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1598 SAMTools SNP 10325 10325 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1598 SAMTools SNP 10504 10504 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C129:33 scaffold1598 SAMTools SNP 10530 10530 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1598 SAMTools SNP 10548 10548 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1598 SAMTools SNP 10566 10566 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold1598 SAMTools SNP 10788 10788 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C212:99 scaffold1598 SAMTools SNP 11637 11637 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.06%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C242:58 scaffold1598 SAMTools SNP 11714 11714 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1598 SAMTools SNP 14638 14638 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold1598 SAMTools SNP 18498 18498 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1598 SAMTools SNP 18516 18516 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1598 SAMTools SNP 21573 21573 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1598 SAMTools SNP 21686 21686 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1598 SAMTools SNP 24504 24504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1598 SAMTools SNP 25951 25951 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C10%2C40%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.12%2C1.4e-09%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1598 SAMTools SNP 27119 27119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1598 SAMTools SNP 27657 27657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C133%2C4%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1598 SAMTools SNP 28265 28265 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C52%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1598 SAMTools SNP 28493 28493 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C17%2C26%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.022%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1598 SAMTools SNP 28529 28529 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1598 SAMTools SNP 29465 29465 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C77%2C6%2C39%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.04%2C4.2e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1598 SAMTools SNP 29798 29798 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C243:68 scaffold1598 SAMTools SNP 41241 41241 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.17%2C5e-19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1598 SAMTools SNP 47091 47091 94.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C8:11 scaffold1598 SAMTools SNP 47681 47681 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1598 SAMTools SNP 47746 47746 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D1%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C32:35 scaffold1598 SAMTools SNP 51496 51496 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 6488 6488 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1599 SAMTools SNP 8489 8489 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1599 SAMTools SNP 8677 8677 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1599 SAMTools SNP 9390 9390 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 9592 9592 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold1599 SAMTools SNP 9743 9743 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1599 SAMTools SNP 9765 9765 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1599 SAMTools SNP 9855 9855 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1599 SAMTools SNP 10015 10015 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 10578 10578 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 11171 11171 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 13468 13468 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C8%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.025%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1599 SAMTools SNP 13509 13509 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold1599 SAMTools SNP 13516 13516 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold1599 SAMTools SNP 13911 13911 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1599 SAMTools SNP 13956 13956 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1599 SAMTools SNP 14280 14280 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C7%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1599 SAMTools SNP 14659 14659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1599 SAMTools SNP 15117 15117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 15381 15381 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C16%2C42%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 15596 15596 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 15611 15611 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1599 SAMTools SNP 17731 17731 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1599 SAMTools SNP 17757 17757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1599 SAMTools SNP 17939 17939 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1599 SAMTools SNP 17960 17960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold1599 SAMTools SNP 18414 18414 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 19288 19288 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1599 SAMTools SNP 21062 21062 106 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D109%3BPV4%3D3.7e-05%2C1.7e-07%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1599 SAMTools SNP 23161 23161 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C45%2C16%3BMQ%3D50%3BFQ%3D-142%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C115%2C0:99 scaffold1599 SAMTools SNP 23407 23407 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C24%2C7%2C10%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.099%2C0.0087%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1599 SAMTools SNP 23707 23707 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1599 SAMTools SNP 23840 23840 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1599 SAMTools SNP 24358 24358 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.64%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1599 SAMTools SNP 24623 24623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 24643 24643 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 24661 24661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 28210 28210 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.31%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1599 SAMTools SNP 28469 28469 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.16%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 28493 28493 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C55%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1599 SAMTools SNP 28701 28701 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 28713 28713 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.19%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 28752 28752 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.069%2C0.0025%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1599 SAMTools SNP 29548 29548 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C237:76 scaffold1599 SAMTools SNP 29560 29560 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1599 SAMTools SNP 29674 29674 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1599 SAMTools SNP 29691 29691 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1599 SAMTools SNP 30890 30890 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1599 SAMTools SNP 30904 30904 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1599 SAMTools SNP 30905 30905 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.51%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1599 SAMTools SNP 31047 31047 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C4%2C0%3BMQ%3D49%3BFQ%3D47%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1599 SAMTools SNP 31159 31159 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C6%2C2%3BMQ%3D49%3BFQ%3D154%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1599 SAMTools SNP 32132 32132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1599 SAMTools SNP 32188 32188 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1599 SAMTools SNP 32200 32200 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1599 SAMTools SNP 32532 32532 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C23%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1599 SAMTools SNP 32986 32986 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 33253 33253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1599 SAMTools SNP 34146 34146 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.2%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C134:99 scaffold1599 SAMTools SNP 34521 34521 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1599 SAMTools SNP 34539 34539 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1599 SAMTools SNP 34696 34696 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1599 SAMTools SNP 34951 34951 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1599 SAMTools SNP 36156 36156 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1599 SAMTools SNP 36885 36885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1599 SAMTools SNP 37011 37011 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1599 SAMTools SNP 37692 37692 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 38324 38324 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 43116 43116 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1599 SAMTools SNP 44981 44981 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 44996 44996 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C4%2C6%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.44%2C3.8e-07%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1599 SAMTools SNP 45224 45224 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1599 SAMTools SNP 45551 45551 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.43%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C241:99 scaffold1599 SAMTools SNP 46062 46062 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 46479 46479 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.48%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C201:66 scaffold1599 SAMTools SNP 46488 46488 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1599 SAMTools SNP 46533 46533 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D23.9%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C51:54 scaffold1599 SAMTools SNP 46915 46915 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.23%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold1599 SAMTools SNP 54324 54324 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1599 SAMTools SNP 54847 54847 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1599 SAMTools SNP 57204 57204 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1599 SAMTools SNP 57211 57211 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1599 SAMTools SNP 58283 58283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1599 SAMTools SNP 58388 58388 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1599 SAMTools SNP 60374 60374 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.12%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C181:99 scaffold1599 SAMTools SNP 60667 60667 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1599 SAMTools SNP 62028 62028 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1599 SAMTools SNP 62215 62215 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.12%2C0.15%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1599 SAMTools SNP 62818 62818 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1599 SAMTools SNP 63185 63185 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1599 SAMTools SNP 63605 63605 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold1599 SAMTools SNP 64863 64863 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1599 SAMTools SNP 64883 64883 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.24%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1599 SAMTools SNP 64903 64903 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold1599 SAMTools SNP 65537 65537 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1599 SAMTools SNP 65602 65602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 66580 66580 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 66671 66671 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C24%2C0:45 scaffold1599 SAMTools SNP 66742 66742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 67580 67580 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C10%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C4.3e-06%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 67586 67586 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C9%3BMQ%3D49%3BFQ%3D224%3BPV4%3D0.24%2C0.034%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1599 SAMTools SNP 68236 68236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1599 SAMTools SNP 68281 68281 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C5%3BMQ%3D49%3BFQ%3D180%3BPV4%3D1%2C0.16%2C0.24%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1599 SAMTools SNP 74278 74278 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1599 SAMTools SNP 76277 76277 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.8e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C189:53 scaffold1599 SAMTools SNP 77961 77961 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C15%2C35%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 78828 78828 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold1599 SAMTools SNP 78869 78869 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1599 SAMTools SNP 79029 79029 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.37%2C0.049%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C158:99 scaffold1599 SAMTools SNP 79075 79075 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1599 SAMTools SNP 84998 84998 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 85023 85023 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 95934 95934 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C39%2C0:75 scaffold1599 SAMTools SNP 96232 96232 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C99%2C0:99 scaffold1599 SAMTools SNP 96327 96327 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C6.8e-25%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 99018 99018 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1599 SAMTools SNP 99522 99522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1599 SAMTools SNP 99594 99594 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C57%2C0:99 scaffold1599 SAMTools SNP 99846 99846 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C13%2C10%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.79%2C8.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1599 SAMTools SNP 100461 100461 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C47%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C232%2C0:99 scaffold1599 SAMTools SNP 104116 104116 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1599 SAMTools SNP 104156 104156 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1599 SAMTools SNP 106043 106043 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 106058 106058 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 106111 106111 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1599 SAMTools SNP 106145 106145 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1599 SAMTools SNP 107430 107430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 107619 107619 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 107827 107827 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1599 SAMTools SNP 108593 108593 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1599 SAMTools SNP 112509 112509 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.49%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C157:39 scaffold1599 SAMTools SNP 114435 114435 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1599 SAMTools SNP 115455 115455 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1599 SAMTools SNP 115583 115583 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1599 SAMTools SNP 115761 115761 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 115784 115784 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C19%2C39%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 117090 117090 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C34%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1599 SAMTools SNP 122330 122330 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 122653 122653 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C27%2C0:51 scaffold1599 SAMTools SNP 123022 123022 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1599 SAMTools SNP 123391 123391 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.46%2C0.0028%2C0.039%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C230:31 scaffold1599 SAMTools SNP 123417 123417 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D47%3BFQ%3D24%3BPV4%3D1%2C0.16%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold1599 SAMTools SNP 123451 123451 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D48%3BFQ%3D44%3BPV4%3D1%2C0.036%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1599 SAMTools SNP 123655 123655 57.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold1599 SAMTools SNP 124061 124061 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1599 SAMTools SNP 124662 124662 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 124671 124671 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 127020 127020 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.022%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C121:39 scaffold1599 SAMTools SNP 127779 127779 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.28%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1599 SAMTools SNP 127817 127817 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1599 SAMTools SNP 128475 128475 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold1599 SAMTools SNP 128688 128688 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1599 SAMTools SNP 128694 128694 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.11%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1599 SAMTools SNP 129088 129088 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 129638 129638 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 135359 135359 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1599 SAMTools SNP 136399 136399 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C51%2C0:99 scaffold1599 SAMTools SNP 137158 137158 25.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1599 SAMTools SNP 137277 137277 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C35:38 scaffold1599 SAMTools SNP 138088 138088 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold1599 SAMTools SNP 138126 138126 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1599 SAMTools SNP 139175 139175 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C30%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold1599 SAMTools SNP 155693 155693 51.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold1599 SAMTools SNP 156097 156097 211 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C30%2C6%2C229%2C0%2C226:45 scaffold1599 SAMTools SNP 156167 156167 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1599 SAMTools SNP 156194 156194 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C11%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1599 SAMTools SNP 157655 157655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 159167 159167 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.66%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1599 SAMTools SNP 159679 159679 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1599 SAMTools SNP 159715 159715 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 161479 161479 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 161841 161841 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1599 SAMTools SNP 161856 161856 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1599 SAMTools SNP 162767 162767 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1599 SAMTools SNP 163076 163076 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C55%2C8%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1599 SAMTools SNP 163100 163100 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C12%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1599 SAMTools SNP 163682 163682 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold1599 SAMTools SNP 165792 165792 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1599 SAMTools SNP 166390 166390 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C4%2C3%2C0%3BMQ%3D48%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1599 SAMTools SNP 166395 166395 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C8%2C0%3BMQ%3D49%3BFQ%3D16.1%3BPV4%3D0.56%2C6.2e-06%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1599 SAMTools SNP 166444 166444 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C4%3BMQ%3D49%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1599 SAMTools SNP 167745 167745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1599 SAMTools SNP 170111 170111 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1599 SAMTools SNP 170157 170157 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1599 SAMTools SNP 175905 175905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 175917 175917 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 176805 176805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C24%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C7.1e-26%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 176834 176834 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C29%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.3%2C5.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1599 SAMTools SNP 176956 176956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 177728 177728 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.0017%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C247:99 scaffold1599 SAMTools SNP 177746 177746 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1599 SAMTools SNP 177788 177788 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 178277 178277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 178422 178422 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 178839 178839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 178885 178885 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C8.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1599 SAMTools SNP 181271 181271 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C95%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.1e-09%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C255%2C0:99 scaffold1599 SAMTools SNP 184523 184523 41.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1599 SAMTools SNP 196164 196164 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1599 SAMTools SNP 196234 196234 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1599 SAMTools SNP 196329 196329 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1599 SAMTools SNP 201441 201441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 205152 205152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 205172 205172 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C158:99 scaffold1599 SAMTools SNP 205415 205415 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C24:27 scaffold1599 SAMTools SNP 205508 205508 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C223:55 scaffold1599 SAMTools SNP 205539 205539 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1599 SAMTools SNP 213194 213194 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 213223 213223 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 213387 213387 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1599 SAMTools SNP 213729 213729 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 219501 219501 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1599 SAMTools SNP 219526 219526 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1599 SAMTools SNP 219726 219726 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.43%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C121:48 scaffold1599 SAMTools SNP 229148 229148 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1599 SAMTools SNP 266036 266036 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1599 SAMTools SNP 293926 293926 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C110:50 scaffold1599 SAMTools SNP 294576 294576 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C0.022%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1599 SAMTools SNP 295022 295022 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C40%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0006%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 295560 295560 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C104%2C1%2C26%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.38%2C1%2C7.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1599 SAMTools SNP 298044 298044 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C20%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C5.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 298104 298104 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C46%2C43%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-07%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 298598 298598 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C56%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.4e-19%2C0.091%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 298646 298646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C11%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.043%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 299674 299674 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C11%2C29%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-21%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 300092 300092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 300132 300132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 300791 300791 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.071%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1599 SAMTools SNP 301431 301431 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.6%2C0.085%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1599 SAMTools SNP 301602 301602 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 301693 301693 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 302165 302165 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.09%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1599 SAMTools SNP 302166 302166 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1599 SAMTools SNP 302175 302175 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1599 SAMTools SNP 302531 302531 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.048%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1599 SAMTools SNP 302582 302582 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C9%2C0%3BMQ%3D48%3BFQ%3D112%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1599 SAMTools SNP 302830 302830 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C13%2C6%2C0%3BMQ%3D45%3BFQ%3D9.53%3BPV4%3D0.15%2C2.2e-05%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1599 SAMTools SNP 314162 314162 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1599 SAMTools SNP 316934 316934 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1599 SAMTools SNP 317514 317514 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 320603 320603 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1599 SAMTools SNP 327630 327630 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 334781 334781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1599 SAMTools SNP 334830 334830 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1599 SAMTools SNP 334837 334837 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1599 SAMTools SNP 334883 334883 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 338813 338813 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 346784 346784 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 348581 348581 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 349641 349641 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 350875 350875 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 350934 350934 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1599 SAMTools SNP 352014 352014 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 352067 352067 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 371299 371299 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C171:99 scaffold1599 SAMTools SNP 371489 371489 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 371502 371502 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 376279 376279 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1599 SAMTools SNP 381388 381388 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 383718 383718 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1599 SAMTools SNP 384716 384716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C30%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1599 SAMTools SNP 384732 384732 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 386014 386014 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C26%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 386180 386180 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1599 SAMTools SNP 386953 386953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C32%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 386968 386968 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C10%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.53%2C0.00013%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1599 SAMTools SNP 386969 386969 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C22%2C17%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1599 SAMTools SNP 387247 387247 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C5%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.7%2C0.15%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1599 SAMTools SNP 388457 388457 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C14%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.026%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1599 SAMTools SNP 388463 388463 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C13%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.025%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1599 SAMTools SNP 388620 388620 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1599 SAMTools SNP 388673 388673 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1599 SAMTools SNP 389274 389274 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 389292 389292 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1599 SAMTools SNP 389453 389453 68.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold1599 SAMTools SNP 390298 390298 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C29%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.026%2C0.28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1599 SAMTools SNP 390307 390307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C28%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1599 SAMTools SNP 390598 390598 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.081%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold1599 SAMTools SNP 390630 390630 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1599 SAMTools SNP 390645 390645 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1599 SAMTools SNP 390699 390699 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C107:99 scaffold1599 SAMTools SNP 390714 390714 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold1599 SAMTools SNP 391433 391433 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1599 SAMTools SNP 391460 391460 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1599 SAMTools SNP 392800 392800 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1599 SAMTools SNP 393042 393042 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold1599 SAMTools SNP 429691 429691 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1599 SAMTools SNP 431499 431499 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold1599 SAMTools SNP 483142 483142 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.069%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1599 SAMTools SNP 483158 483158 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1599 SAMTools SNP 491648 491648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 503763 503763 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold1599 SAMTools SNP 504225 504225 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1599 SAMTools SNP 508368 508368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1599 SAMTools SNP 525512 525512 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C117%2C0:99 scaffold1599 SAMTools SNP 526170 526170 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold1599 SAMTools SNP 527593 527593 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C15%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C150:99 scaffold1599 SAMTools SNP 527620 527620 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 568534 568534 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 574209 574209 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1599 SAMTools SNP 575242 575242 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C3%3BMQ%3D39%3BFQ%3D-55%3BPV4%3D1%2C1.6e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C28%2C0:53 scaffold1599 SAMTools SNP 587040 587040 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1599 SAMTools SNP 610790 610790 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1599 SAMTools SNP 613584 613584 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 625077 625077 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1599 SAMTools SNP 626619 626619 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1599 SAMTools SNP 630785 630785 71.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold1599 SAMTools SNP 690035 690035 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C92%2C6%2C87%3BMQ%3D35%3BFQ%3D160%3BPV4%3D0.00013%2C7.9e-89%2C0.16%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1599 SAMTools SNP 690334 690334 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1599 SAMTools SNP 690340 690340 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold1599 SAMTools SNP 690449 690449 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C47%2C2%2C108%3BMQ%3D50%3BFQ%3D155%3BPV4%3D4.3e-27%2C1.3e-54%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1599 SAMTools SNP 690761 690761 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C255%2C0:99 scaffold1599 SAMTools SNP 690830 690830 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C51%2C35%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.25%2C1%2C1%2C9.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1599 SAMTools SNP 690872 690872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C106%2C44%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 691254 691254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C333%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 691269 691269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C314%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 691332 691332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C157%2C21%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 691553 691553 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 691682 691682 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 691697 691697 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 691941 691941 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 691968 691968 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C28%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1599 SAMTools SNP 692908 692908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C22%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1599 SAMTools SNP 692919 692919 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C36%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1599 SAMTools SNP 693128 693128 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C36%2C1%2C13%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.00039%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1599 SAMTools SNP 693137 693137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C33%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1599 SAMTools SNP 693179 693179 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C24%2C0:45 scaffold1599 SAMTools SNP 693224 693224 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0023%2C0.06%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1599 SAMTools SNP 693531 693531 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C422%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 693668 693668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1599 SAMTools SNP 693690 693690 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 693691 693691 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1599 SAMTools SNP 694740 694740 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D760%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 694988 694988 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C402%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 695190 695190 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C43%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 695226 695226 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D234%2C44%2C176%2C35%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.9%2C0%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1599 SAMTools SNP 695904 695904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C130%2C95%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.016%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C69:72 scaffold1599 SAMTools SNP 696080 696080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C440%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 696625 696625 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1599 SAMTools SNP 703850 703850 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1599 SAMTools SNP 706952 706952 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1599 SAMTools SNP 707081 707081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C28:31 scaffold1599 SAMTools SNP 707102 707102 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C146:99 scaffold1599 SAMTools SNP 707560 707560 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1599 SAMTools SNP 716922 716922 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 717514 717514 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1599 SAMTools SNP 717526 717526 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.015%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1599 SAMTools SNP 717555 717555 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1599 SAMTools SNP 718055 718055 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.018%2C0.0014%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1599 SAMTools SNP 718121 718121 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold1599 SAMTools SNP 722370 722370 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 722375 722375 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 729776 729776 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C207:99 scaffold1599 SAMTools SNP 729795 729795 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 730285 730285 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C49%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C5.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 730409 730409 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C52%2C2%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.64%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1599 SAMTools SNP 730423 730423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 735341 735341 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1599 SAMTools SNP 737934 737934 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 738574 738574 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1599 SAMTools SNP 740515 740515 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 741376 741376 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1599 SAMTools SNP 747630 747630 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C55%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 787350 787350 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold1599 SAMTools SNP 789188 789188 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1599 SAMTools SNP 802890 802890 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1599 SAMTools SNP 809499 809499 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1599 SAMTools SNP 841143 841143 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 858556 858556 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1599 SAMTools SNP 863314 863314 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 863556 863556 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1599 SAMTools SNP 866172 866172 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1599 SAMTools SNP 866192 866192 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1599 SAMTools SNP 894517 894517 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C44%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.75%2C0.29%2C0.072%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 894556 894556 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1599 SAMTools SNP 896515 896515 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C26%2C30%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.57%2C0.057%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 896533 896533 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C34%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.39%2C0.14%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 896536 896536 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C31%2C17%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 896620 896620 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C58%3BMQ%3D48%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1599 SAMTools SNP 900354 900354 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1599 SAMTools SNP 913377 913377 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0084%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1599 SAMTools SNP 913647 913647 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C3%2C10%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.3%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1599 SAMTools SNP 931034 931034 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C4.1e-24%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C203:99 scaffold1599 SAMTools SNP 931098 931098 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C5%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C163%2C0:99 scaffold1599 SAMTools SNP 931197 931197 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C17%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C9.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1599 SAMTools SNP 933436 933436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1599 SAMTools SNP 935817 935817 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1599 SAMTools SNP 937044 937044 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1599 SAMTools SNP 954166 954166 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1599 SAMTools SNP 954230 954230 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold1599 SAMTools SNP 973665 973665 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C46%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.014%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 973925 973925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1599 SAMTools SNP 973977 973977 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.016%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1599 SAMTools SNP 974529 974529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1599 SAMTools SNP 975982 975982 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.11%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C35:38 scaffold1599 SAMTools SNP 976952 976952 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0016%2C1%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1599 SAMTools SNP 976976 976976 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1599 SAMTools SNP 978023 978023 101 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-40;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C121%2C166%2C0%2C157:23 scaffold1599 SAMTools SNP 978068 978068 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1599 SAMTools SNP 979595 979595 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C3%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1599 SAMTools SNP 979608 979608 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1599 SAMTools SNP 983836 983836 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1599 SAMTools SNP 983892 983892 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1599 SAMTools SNP 985868 985868 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1599 SAMTools SNP 985967 985967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1599 SAMTools SNP 986262 986262 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 986683 986683 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1599 SAMTools SNP 987324 987324 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1599 SAMTools SNP 992308 992308 40.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1599 SAMTools SNP 992431 992431 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1599 SAMTools SNP 1001699 1001699 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1599 SAMTools SNP 1001726 1001726 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1001727 1001727 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1004525 1004525 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1599 SAMTools SNP 1008796 1008796 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1599 SAMTools SNP 1011862 1011862 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1031994 1031994 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1599 SAMTools SNP 1036979 1036979 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1599 SAMTools SNP 1037269 1037269 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1599 SAMTools SNP 1037646 1037646 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.057%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 1037661 1037661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1599 SAMTools SNP 1039164 1039164 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1599 SAMTools SNP 1039896 1039896 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.07%2C0.0021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C218:99 scaffold1599 SAMTools SNP 1040740 1040740 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1599 SAMTools SNP 1040806 1040806 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1599 SAMTools SNP 1041250 1041250 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1599 SAMTools SNP 1041289 1041289 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1599 SAMTools SNP 1045738 1045738 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1599 SAMTools SNP 1045994 1045994 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1599 SAMTools SNP 1045997 1045997 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1599 SAMTools SNP 1046021 1046021 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1599 SAMTools SNP 1046048 1046048 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1599 SAMTools SNP 1046926 1046926 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1599 SAMTools SNP 1046971 1046971 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.024%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1599 SAMTools SNP 1047516 1047516 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1599 SAMTools SNP 1047533 1047533 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1048898 1048898 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1599 SAMTools SNP 1048937 1048937 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1599 SAMTools SNP 1049779 1049779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1599 SAMTools SNP 1049895 1049895 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1599 SAMTools SNP 1049928 1049928 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 1050123 1050123 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.2%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1599 SAMTools SNP 1050135 1050135 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1599 SAMTools SNP 1050192 1050192 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.47%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C221:99 scaffold1599 SAMTools SNP 1050240 1050240 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1599 SAMTools SNP 1050429 1050429 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1599 SAMTools SNP 1050642 1050642 52.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold1599 SAMTools SNP 1054784 1054784 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1599 SAMTools SNP 1063503 1063503 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1063772 1063772 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D0.11%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C240:33 scaffold1599 SAMTools SNP 1064457 1064457 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1599 SAMTools SNP 1064464 1064464 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1599 SAMTools SNP 1065458 1065458 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1066144 1066144 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1070646 1070646 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1095336 1095336 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 1095352 1095352 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 1095957 1095957 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1096002 1096002 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1599 SAMTools SNP 1096026 1096026 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 1096991 1096991 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1599 SAMTools SNP 1097275 1097275 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1599 SAMTools SNP 1097344 1097344 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1599 SAMTools SNP 1097392 1097392 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1599 SAMTools SNP 1097631 1097631 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1599 SAMTools SNP 1097680 1097680 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1599 SAMTools SNP 1098656 1098656 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1098761 1098761 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1098940 1098940 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1100448 1100448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.007%2C0.17%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1599 SAMTools SNP 1100463 1100463 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1599 SAMTools SNP 1100535 1100535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1599 SAMTools SNP 1100748 1100748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1599 SAMTools SNP 1100842 1100842 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 1100843 1100843 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 1101427 1101427 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 1101430 1101430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1599 SAMTools SNP 1101950 1101950 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C215:99 scaffold1599 SAMTools SNP 1102260 1102260 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C54%2C0:99 scaffold1599 SAMTools SNP 1105022 1105022 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1106083 1106083 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.48%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1599 SAMTools SNP 1106145 1106145 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1599 SAMTools SNP 1106894 1106894 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C215:99 scaffold1599 SAMTools SNP 1106945 1106945 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold1599 SAMTools SNP 1109862 1109862 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1109878 1109878 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1599 SAMTools SNP 1110204 1110204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1599 SAMTools SNP 1110594 1110594 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1599 SAMTools SNP 1110636 1110636 88 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold1599 SAMTools SNP 1111323 1111323 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1111326 1111326 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1111702 1111702 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.14%2C0.46%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C27:30 scaffold1599 SAMTools SNP 1111714 1111714 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1599 SAMTools SNP 1112054 1112054 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 1112069 1112069 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 1114585 1114585 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1599 SAMTools SNP 1122670 1122670 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.14%2C0.0024%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1599 SAMTools SNP 1124494 1124494 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.64%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1599 SAMTools SNP 1174103 1174103 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1599 SAMTools SNP 1200291 1200291 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1599 SAMTools SNP 1203995 1203995 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1599 SAMTools SNP 1205028 1205028 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1599 SAMTools SNP 1217369 1217369 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1218977 1218977 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1599 SAMTools SNP 1219047 1219047 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1599 SAMTools SNP 1220058 1220058 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1599 SAMTools SNP 1220107 1220107 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1220124 1220124 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1599 SAMTools SNP 1220296 1220296 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1599 SAMTools SNP 1220806 1220806 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1599 SAMTools SNP 1220851 1220851 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1599 SAMTools SNP 1220998 1220998 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1221031 1221031 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1221088 1221088 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1599 SAMTools SNP 1221390 1221390 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1222875 1222875 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1222891 1222891 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1223181 1223181 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1223199 1223199 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1224747 1224747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1599 SAMTools SNP 1225062 1225062 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1599 SAMTools SNP 1225895 1225895 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C27%2C0:51 scaffold1599 SAMTools SNP 1226488 1226488 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1599 SAMTools SNP 1226497 1226497 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1599 SAMTools SNP 1239890 1239890 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1599 SAMTools SNP 1240264 1240264 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1599 SAMTools SNP 1248954 1248954 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1248971 1248971 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1599 SAMTools SNP 1251929 1251929 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1251932 1251932 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1251995 1251995 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1599 SAMTools SNP 1252801 1252801 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1599 SAMTools SNP 1253253 1253253 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1599 SAMTools SNP 1281472 1281472 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1599 SAMTools SNP 1281868 1281868 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1599 SAMTools SNP 1282512 1282512 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1599 SAMTools SNP 1282538 1282538 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.39%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C235:99 scaffold1599 SAMTools SNP 1283728 1283728 61.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C15%2C0:27 scaffold1599 SAMTools SNP 1285720 1285720 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold1599 SAMTools SNP 1286965 1286965 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1599 SAMTools SNP 1287153 1287153 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1599 SAMTools SNP 1287286 1287286 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1599 SAMTools SNP 1287369 1287369 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.27%2C0.031%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1599 SAMTools SNP 1287534 1287534 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.48%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold1599 SAMTools SNP 1287561 1287561 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C234:66 scaffold1599 SAMTools SNP 1287917 1287917 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.31%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1599 SAMTools SNP 1287927 1287927 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1599 SAMTools SNP 1288649 1288649 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1599 SAMTools SNP 1288665 1288665 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.2%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C71:74 scaffold1599 SAMTools SNP 1288736 1288736 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1599 SAMTools SNP 1288884 1288884 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1599 SAMTools SNP 1289032 1289032 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C253:99 scaffold1599 SAMTools SNP 1289166 1289166 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1599 SAMTools SNP 1289170 1289170 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C108:80 scaffold1599 SAMTools SNP 1289176 1289176 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1599 SAMTools SNP 1289617 1289617 12.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1599 SAMTools SNP 1291717 1291717 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1599 SAMTools SNP 1291814 1291814 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1599 SAMTools SNP 1292126 1292126 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1599 SAMTools SNP 1292162 1292162 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1599 SAMTools SNP 1292277 1292277 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold1599 SAMTools SNP 1311359 1311359 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C45%2C0:87 scaffold1599 SAMTools SNP 1311705 1311705 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1599 SAMTools SNP 1311770 1311770 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C39%2C0:75 scaffold1599 SAMTools SNP 1313387 1313387 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1599 SAMTools SNP 1315311 1315311 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1599 SAMTools SNP 1315429 1315429 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold160 SAMTools SNP 9554 9554 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold160 SAMTools SNP 11696 11696 21.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold160 SAMTools SNP 12052 12052 22.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold160 SAMTools SNP 19087 19087 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C0:4 scaffold160 SAMTools SNP 39957 39957 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold160 SAMTools SNP 70765 70765 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 71237 71237 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 71336 71336 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold160 SAMTools SNP 72091 72091 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 73993 73993 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C17%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold160 SAMTools SNP 75550 75550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C37%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold160 SAMTools SNP 75624 75624 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.046%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold160 SAMTools SNP 76691 76691 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.023%2C0.11%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold160 SAMTools SNP 84513 84513 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold160 SAMTools SNP 84531 84531 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold160 SAMTools SNP 92962 92962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold160 SAMTools SNP 94013 94013 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold160 SAMTools SNP 94639 94639 49.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold160 SAMTools SNP 95083 95083 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold160 SAMTools SNP 96618 96618 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold160 SAMTools SNP 99039 99039 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C42%2C0:81 scaffold160 SAMTools SNP 99999 99999 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold160 SAMTools SNP 100116 100116 74.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold160 SAMTools SNP 103063 103063 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold160 SAMTools SNP 103082 103082 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold160 SAMTools SNP 103110 103110 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold160 SAMTools SNP 106351 106351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold160 SAMTools SNP 116287 116287 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold160 SAMTools SNP 164756 164756 55.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold160 SAMTools SNP 165560 165560 31.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold160 SAMTools SNP 207624 207624 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C6.5e-09%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C102:56 scaffold160 SAMTools SNP 207643 207643 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C6.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C91:94 scaffold160 SAMTools SNP 208034 208034 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold160 SAMTools SNP 208183 208183 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold160 SAMTools SNP 208627 208627 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold160 SAMTools SNP 212005 212005 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D47%3BFQ%3D166%3BPV4%3D1%2C0.2%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C249:99 scaffold160 SAMTools SNP 212026 212026 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C1%3BMQ%3D48%3BFQ%3D8.65%3BPV4%3D1%2C0.019%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold160 SAMTools SNP 213765 213765 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0210%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold160 SAMTools SNP 213781 213781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold160 SAMTools SNP 214128 214128 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C148:99 scaffold160 SAMTools SNP 214346 214346 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C171:82 scaffold160 SAMTools SNP 214646 214646 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold160 SAMTools SNP 214670 214670 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold160 SAMTools SNP 215454 215454 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold160 SAMTools SNP 215471 215471 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold160 SAMTools SNP 215793 215793 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold160 SAMTools SNP 216177 216177 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold160 SAMTools SNP 218316 218316 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold160 SAMTools SNP 218338 218338 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold160 SAMTools SNP 219145 219145 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold160 SAMTools SNP 219251 219251 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D9.36%3BPV4%3D0.33%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C42:38 scaffold160 SAMTools SNP 219864 219864 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 219910 219910 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 219915 219915 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold160 SAMTools SNP 219919 219919 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.016%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C223:53 scaffold160 SAMTools SNP 219920 219920 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.38%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold160 SAMTools SNP 221448 221448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold160 SAMTools SNP 221520 221520 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C200:79 scaffold160 SAMTools SNP 222562 222562 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 222691 222691 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold160 SAMTools SNP 222714 222714 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold160 SAMTools SNP 226964 226964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 227002 227002 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.098%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold160 SAMTools SNP 227167 227167 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 227177 227177 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 227414 227414 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C45%2C0:87 scaffold160 SAMTools SNP 228726 228726 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.31%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold160 SAMTools SNP 228746 228746 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C54:57 scaffold160 SAMTools SNP 229924 229924 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold160 SAMTools SNP 230252 230252 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold160 SAMTools SNP 231718 231718 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C5.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 231741 231741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 231769 231769 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D260%2C9%2C202%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 231813 231813 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D218%2C35%2C284%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 232584 232584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C276%2C9%2C209%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 233083 233083 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 237835 237835 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C20%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C3.9e-47%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C244:44 scaffold160 SAMTools SNP 238577 238577 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold160 SAMTools SNP 238798 238798 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C27%2C0:51 scaffold160 SAMTools SNP 239306 239306 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold160 SAMTools SNP 239834 239834 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 240019 240019 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold160 SAMTools SNP 241016 241016 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.3%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold160 SAMTools SNP 241788 241788 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold160 SAMTools SNP 241848 241848 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold160 SAMTools SNP 242456 242456 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.03%2C4.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold160 SAMTools SNP 242486 242486 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.49%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold160 SAMTools SNP 242516 242516 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.31%2C0.16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C245:99 scaffold160 SAMTools SNP 242525 242525 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C17%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.35%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C225:99 scaffold160 SAMTools SNP 245138 245138 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold160 SAMTools SNP 245141 245141 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold160 SAMTools SNP 245238 245238 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D31%2C6%2C21%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.7%2C2.1e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold160 SAMTools SNP 245341 245341 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold160 SAMTools SNP 245390 245390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold160 SAMTools SNP 245909 245909 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 246107 246107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold160 SAMTools SNP 246353 246353 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold160 SAMTools SNP 248446 248446 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold160 SAMTools SNP 248490 248490 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.47%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold160 SAMTools SNP 248939 248939 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold160 SAMTools SNP 248965 248965 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold160 SAMTools SNP 249375 249375 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold160 SAMTools SNP 250294 250294 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold160 SAMTools SNP 250757 250757 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C176:77 scaffold160 SAMTools SNP 250806 250806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold160 SAMTools SNP 251218 251218 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold160 SAMTools SNP 251272 251272 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold160 SAMTools SNP 251274 251274 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold160 SAMTools SNP 255142 255142 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold160 SAMTools SNP 255192 255192 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold160 SAMTools SNP 255646 255646 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 255658 255658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 255691 255691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C0%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold160 SAMTools SNP 256867 256867 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C28%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold160 SAMTools SNP 258961 258961 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold160 SAMTools SNP 260437 260437 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold160 SAMTools SNP 260475 260475 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold160 SAMTools SNP 261204 261204 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 261207 261207 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 264485 264485 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold160 SAMTools SNP 269050 269050 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold160 SAMTools SNP 269762 269762 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold160 SAMTools SNP 269774 269774 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold160 SAMTools SNP 271199 271199 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold160 SAMTools SNP 271289 271289 96 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C86%2C77%2C129%2C0%2C123:16 scaffold160 SAMTools SNP 273116 273116 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0077%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.32%2C0.00037%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold160 SAMTools SNP 273391 273391 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold160 SAMTools SNP 274923 274923 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold160 SAMTools SNP 276852 276852 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C119:99 scaffold160 SAMTools SNP 282641 282641 64.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold160 SAMTools SNP 282776 282776 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 283056 283056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 283077 283077 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.24%2C0.34%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold160 SAMTools SNP 283093 283093 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold160 SAMTools SNP 283188 283188 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold160 SAMTools SNP 283206 283206 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C66%2C0%2C24%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.062%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold160 SAMTools SNP 283403 283403 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C67%2C1%2C28%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.44%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold160 SAMTools SNP 287466 287466 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold160 SAMTools SNP 287490 287490 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold160 SAMTools SNP 287950 287950 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold160 SAMTools SNP 288726 288726 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 288755 288755 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold160 SAMTools SNP 290341 290341 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 290632 290632 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 293715 293715 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold160 SAMTools SNP 294603 294603 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold160 SAMTools SNP 294918 294918 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C213:72 scaffold160 SAMTools SNP 296505 296505 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 306909 306909 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold160 SAMTools SNP 307438 307438 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 307505 307505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 307647 307647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold160 SAMTools SNP 307791 307791 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C14%2C14%2C14%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0063%2C2.6e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold160 SAMTools SNP 307821 307821 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C255%2C0:99 scaffold160 SAMTools SNP 308308 308308 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C57%2C0:99 scaffold160 SAMTools SNP 308395 308395 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold160 SAMTools SNP 312763 312763 8.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C5.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold160 SAMTools SNP 313266 313266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 314039 314039 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.64%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold160 SAMTools SNP 314831 314831 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0098%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold160 SAMTools SNP 314874 314874 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.51%2C0.38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold160 SAMTools SNP 315313 315313 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.045%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold160 SAMTools SNP 321146 321146 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold160 SAMTools SNP 322532 322532 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold160 SAMTools SNP 323698 323698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold160 SAMTools SNP 324584 324584 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 325222 325222 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold160 SAMTools SNP 325439 325439 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold160 SAMTools SNP 329090 329090 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.64%2C1.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold160 SAMTools SNP 329192 329192 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C18%2C18%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.025%2C1.5e-26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold160 SAMTools SNP 330571 330571 46.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold160 SAMTools SNP 334741 334741 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold160 SAMTools SNP 335129 335129 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 342436 342436 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C25%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00096%2C0.011%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold160 SAMTools SNP 344696 344696 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 344721 344721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold160 SAMTools SNP 348559 348559 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 348572 348572 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 349063 349063 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold160 SAMTools SNP 351749 351749 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold160 SAMTools SNP 351851 351851 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C29:32 scaffold160 SAMTools SNP 351867 351867 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold160 SAMTools SNP 352344 352344 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 352358 352358 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold160 SAMTools SNP 353537 353537 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.009%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C233:99 scaffold160 SAMTools SNP 353566 353566 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold160 SAMTools SNP 363378 363378 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 364039 364039 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 364105 364105 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 366229 366229 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 367067 367067 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 375978 375978 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold160 SAMTools SNP 389121 389121 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold160 SAMTools SNP 392213 392213 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold160 SAMTools SNP 398144 398144 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold160 SAMTools SNP 398551 398551 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 398570 398570 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 429730 429730 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 429847 429847 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold160 SAMTools SNP 465868 465868 69.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold160 SAMTools SNP 515281 515281 79.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C3%2C3%3BMQ%3D26%3BFQ%3D-32%3BPV4%3D0.18%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C5%2C0:9 scaffold160 SAMTools SNP 539663 539663 10.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold160 SAMTools SNP 549911 549911 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold160 SAMTools SNP 580583 580583 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold160 SAMTools SNP 584215 584215 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C57%2C0:99 scaffold160 SAMTools SNP 607571 607571 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold160 SAMTools SNP 607580 607580 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold160 SAMTools SNP 607954 607954 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold160 SAMTools SNP 608144 608144 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.48%2C9.8e-07%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold160 SAMTools SNP 608743 608743 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold160 SAMTools SNP 609265 609265 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold160 SAMTools SNP 640176 640176 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold160 SAMTools SNP 640213 640213 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold160 SAMTools SNP 640893 640893 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C6e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C182:99 scaffold160 SAMTools SNP 647111 647111 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold160 SAMTools SNP 647411 647411 90 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold160 SAMTools SNP 647550 647550 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold160 SAMTools SNP 649419 649419 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold160 SAMTools SNP 650125 650125 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold160 SAMTools SNP 650236 650236 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold160 SAMTools SNP 650808 650808 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold160 SAMTools SNP 651902 651902 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold160 SAMTools SNP 652287 652287 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold160 SAMTools SNP 653044 653044 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.26%2C0.02%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1600 SAMTools SNP 6787 6787 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 6822 6822 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 7543 7543 52.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C1%2C0:4 scaffold1600 SAMTools SNP 8341 8341 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1600 SAMTools SNP 8742 8742 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 10380 10380 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1600 SAMTools SNP 10399 10399 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1600 SAMTools SNP 10474 10474 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.9e-19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C116:64 scaffold1600 SAMTools SNP 10535 10535 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold1600 SAMTools SNP 10573 10573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1600 SAMTools SNP 10929 10929 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1600 SAMTools SNP 11279 11279 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D37%3BFQ%3D12.3%3BPV4%3D0.17%2C0.19%2C0.0048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C132:41 scaffold1600 SAMTools SNP 11456 11456 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C24%2C0:45 scaffold1600 SAMTools SNP 13717 13717 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1600 SAMTools SNP 14363 14363 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 14396 14396 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1600 SAMTools SNP 14838 14838 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold1600 SAMTools SNP 15330 15330 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1600 SAMTools SNP 15345 15345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1600 SAMTools SNP 15435 15435 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1600 SAMTools SNP 15468 15468 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 15911 15911 47.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold1600 SAMTools SNP 16991 16991 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-95;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C187:99 scaffold1600 SAMTools SNP 17408 17408 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C20%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.65%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1600 SAMTools SNP 17507 17507 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C226:99 scaffold1600 SAMTools SNP 17837 17837 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1600 SAMTools SNP 18774 18774 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1600 SAMTools SNP 18860 18860 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1600 SAMTools SNP 18886 18886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1600 SAMTools SNP 19333 19333 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1600 SAMTools SNP 19949 19949 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1600 SAMTools SNP 19979 19979 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C229:37 scaffold1600 SAMTools SNP 20011 20011 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1600 SAMTools SNP 20725 20725 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1600 SAMTools SNP 22474 22474 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 22606 22606 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1600 SAMTools SNP 24686 24686 12 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1600 SAMTools SNP 24782 24782 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 24800 24800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 25856 25856 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C42%2C0:81 scaffold1600 SAMTools SNP 26243 26243 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1600 SAMTools SNP 26246 26246 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 26272 26272 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1600 SAMTools SNP 30430 30430 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 30477 30477 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1600 SAMTools SNP 30567 30567 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1600 SAMTools SNP 30759 30759 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 31371 31371 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 31694 31694 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1600 SAMTools SNP 41101 41101 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1600 SAMTools SNP 41117 41117 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1600 SAMTools SNP 43992 43992 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.12%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1600 SAMTools SNP 44305 44305 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1600 SAMTools SNP 44316 44316 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 44648 44648 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 44780 44780 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1600 SAMTools SNP 46477 46477 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1600 SAMTools SNP 46564 46564 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 46882 46882 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 46951 46951 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 46957 46957 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 48037 48037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 48058 48058 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1600 SAMTools SNP 48646 48646 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1600 SAMTools SNP 49008 49008 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold1600 SAMTools SNP 49478 49478 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D1%2C0.019%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C41:37 scaffold1600 SAMTools SNP 51485 51485 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.37%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1600 SAMTools SNP 52844 52844 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1600 SAMTools SNP 53417 53417 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1600 SAMTools SNP 53438 53438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 53444 53444 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 53498 53498 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1600 SAMTools SNP 53710 53710 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 53891 53891 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 54073 54073 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 54472 54472 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C26:29 scaffold1600 SAMTools SNP 55068 55068 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1600 SAMTools SNP 55558 55558 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 55687 55687 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 58362 58362 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1600 SAMTools SNP 59102 59102 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 60706 60706 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 61094 61094 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1600 SAMTools SNP 61100 61100 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1600 SAMTools SNP 61158 61158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 62028 62028 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 62443 62443 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1600 SAMTools SNP 62470 62470 12 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1600 SAMTools SNP 63031 63031 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 63387 63387 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1600 SAMTools SNP 63420 63420 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1600 SAMTools SNP 65358 65358 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 65367 65367 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 65446 65446 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 65851 65851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 65922 65922 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 66305 66305 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1600 SAMTools SNP 70553 70553 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 70593 70593 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 77962 77962 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 77994 77994 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 80952 80952 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1600 SAMTools SNP 80960 80960 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1600 SAMTools SNP 83680 83680 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 83686 83686 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 84158 84158 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 84457 84457 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 85248 85248 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 87766 87766 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1600 SAMTools SNP 88481 88481 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D41%3BFQ%3D48%3BPV4%3D0.17%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C75:78 scaffold1600 SAMTools SNP 88503 88503 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D48%3BFQ%3D41%3BPV4%3D1%2C0.011%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C241:71 scaffold1600 SAMTools SNP 88853 88853 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C48%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1600 SAMTools SNP 94238 94238 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0001%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C244:60 scaffold1600 SAMTools SNP 100704 100704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1600 SAMTools SNP 101721 101721 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 101753 101753 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 102165 102165 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.055%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold1600 SAMTools SNP 103029 103029 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0027%2C0.31%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1600 SAMTools SNP 112804 112804 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 112806 112806 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 112896 112896 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 114622 114622 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold1600 SAMTools SNP 115281 115281 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1600 SAMTools SNP 115353 115353 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 115364 115364 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 115368 115368 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 116818 116818 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 117358 117358 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00019%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1600 SAMTools SNP 117622 117622 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 117667 117667 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C75%2C0:99 scaffold1600 SAMTools SNP 117822 117822 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 118143 118143 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.28%2C0.26%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1600 SAMTools SNP 118158 118158 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1600 SAMTools SNP 118170 118170 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1600 SAMTools SNP 118215 118215 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1600 SAMTools SNP 118390 118390 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 119070 119070 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1600 SAMTools SNP 119076 119076 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1600 SAMTools SNP 119166 119166 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 122715 122715 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1600 SAMTools SNP 122733 122733 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 123194 123194 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1600 SAMTools SNP 123242 123242 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 126816 126816 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1600 SAMTools SNP 128555 128555 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1600 SAMTools SNP 130130 130130 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1600 SAMTools SNP 130145 130145 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1600 SAMTools SNP 130264 130264 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1600 SAMTools SNP 131144 131144 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1600 SAMTools SNP 133807 133807 40.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1600 SAMTools SNP 137165 137165 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1600 SAMTools SNP 137245 137245 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold1600 SAMTools SNP 139730 139730 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1600 SAMTools SNP 139738 139738 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1600 SAMTools SNP 140246 140246 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1600 SAMTools SNP 140844 140844 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 141860 141860 80.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold1600 SAMTools SNP 141932 141932 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1600 SAMTools SNP 143026 143026 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 143030 143030 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 143898 143898 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1600 SAMTools SNP 145700 145700 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1600 SAMTools SNP 151752 151752 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 151794 151794 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 154502 154502 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1600 SAMTools SNP 155863 155863 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 156596 156596 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1600 SAMTools SNP 156675 156675 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 156735 156735 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 158176 158176 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1600 SAMTools SNP 160401 160401 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.24%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1600 SAMTools SNP 161250 161250 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1600 SAMTools SNP 162002 162002 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1600 SAMTools SNP 162289 162289 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 162801 162801 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 163142 163142 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 163824 163824 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold1600 SAMTools SNP 164374 164374 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 164383 164383 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 164425 164425 15.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold1600 SAMTools SNP 165788 165788 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1600 SAMTools SNP 165803 165803 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold1600 SAMTools SNP 166064 166064 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C173:93 scaffold1600 SAMTools SNP 166067 166067 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.036%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C176:93 scaffold1600 SAMTools SNP 166199 166199 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 166485 166485 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1600 SAMTools SNP 166563 166563 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C12:15 scaffold1600 SAMTools SNP 167021 167021 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 167045 167045 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1600 SAMTools SNP 167087 167087 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.33%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1600 SAMTools SNP 168348 168348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 168354 168354 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.3%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 168802 168802 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 168839 168839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1600 SAMTools SNP 169290 169290 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C32%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C2.1e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1600 SAMTools SNP 203457 203457 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.65%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1600 SAMTools SNP 204305 204305 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 204306 204306 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 204386 204386 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1600 SAMTools SNP 205358 205358 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1600 SAMTools SNP 206540 206540 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1600 SAMTools SNP 207463 207463 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1600 SAMTools SNP 208397 208397 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C26:29 scaffold1600 SAMTools SNP 209225 209225 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1600 SAMTools SNP 209898 209898 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1600 SAMTools SNP 209988 209988 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.15%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1600 SAMTools SNP 210021 210021 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1600 SAMTools SNP 210036 210036 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C3%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.38%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1600 SAMTools SNP 210597 210597 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.38%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1600 SAMTools SNP 210612 210612 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1600 SAMTools SNP 211093 211093 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1600 SAMTools SNP 211110 211110 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 212000 212000 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 212662 212662 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold1600 SAMTools SNP 213992 213992 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 219880 219880 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 219881 219881 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 224975 224975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C25%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1600 SAMTools SNP 224981 224981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C25%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1600 SAMTools SNP 226525 226525 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C48%2C4%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.45%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1600 SAMTools SNP 226585 226585 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C23%2C47%3BMQ%3D50%3BFQ%3D-102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1600 SAMTools SNP 227339 227339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.16%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 227342 227342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1600 SAMTools SNP 227363 227363 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 227892 227892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-05%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 227909 227909 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D221%3BPV4%3D2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1600 SAMTools SNP 229993 229993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1600 SAMTools SNP 230041 230041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1600 SAMTools SNP 230056 230056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1600 SAMTools SNP 232194 232194 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1600 SAMTools SNP 233357 233357 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1600 SAMTools SNP 238891 238891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1600 SAMTools SNP 238921 238921 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C85%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold1600 SAMTools SNP 239700 239700 44.3 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C88%2C73%2C79%2C0%2C70:27 scaffold1600 SAMTools SNP 240048 240048 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.059%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1600 SAMTools SNP 240451 240451 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 241945 241945 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1600 SAMTools SNP 243399 243399 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C15%2C1%3BMQ%3D49%3BFQ%3D201%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1600 SAMTools SNP 244139 244139 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C13%2C44%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.63%2C0.062%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 248310 248310 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1600 SAMTools SNP 249048 249048 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1600 SAMTools SNP 264420 264420 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 270290 270290 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1600 SAMTools SNP 270753 270753 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1600 SAMTools SNP 270864 270864 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1600 SAMTools SNP 271917 271917 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1600 SAMTools SNP 274696 274696 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 275053 275053 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 275055 275055 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 275261 275261 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1600 SAMTools SNP 275500 275500 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 276645 276645 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 280046 280046 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1600 SAMTools SNP 280223 280223 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.49%2C2.3e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C239:99 scaffold1600 SAMTools SNP 280230 280230 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.49%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C110:77 scaffold1600 SAMTools SNP 282345 282345 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 282357 282357 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 283079 283079 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1600 SAMTools SNP 283315 283315 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C98:99 scaffold1600 SAMTools SNP 283339 283339 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C85:88 scaffold1600 SAMTools SNP 284855 284855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1600 SAMTools SNP 284894 284894 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1600 SAMTools SNP 284954 284954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1600 SAMTools SNP 285002 285002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 285613 285613 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 285635 285635 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.0097%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 286391 286391 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C126%2C0:99 scaffold1600 SAMTools SNP 286450 286450 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C26%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 287463 287463 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C66%2C0:99 scaffold1600 SAMTools SNP 287531 287531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C8%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1600 SAMTools SNP 287698 287698 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1600 SAMTools SNP 291727 291727 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C1%2C115%2C6%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.46%2C6.4e-25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C33%2C0:63 scaffold1600 SAMTools SNP 291944 291944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C7%2C1%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-19%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 292004 292004 43.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1600 SAMTools SNP 292037 292037 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold1600 SAMTools SNP 292042 292042 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1600 SAMTools SNP 292477 292477 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1600 SAMTools SNP 292612 292612 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.31%2C2e-07%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1600 SAMTools SNP 293861 293861 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1600 SAMTools SNP 293895 293895 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 293912 293912 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1600 SAMTools SNP 293948 293948 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1600 SAMTools SNP 294345 294345 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1600 SAMTools SNP 294671 294671 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1600 SAMTools SNP 294710 294710 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1600 SAMTools SNP 294866 294866 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.23%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1600 SAMTools SNP 294998 294998 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1600 SAMTools SNP 296493 296493 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.033%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1600 SAMTools SNP 296664 296664 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1600 SAMTools SNP 296835 296835 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1600 SAMTools SNP 296862 296862 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1600 SAMTools SNP 297041 297041 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 297225 297225 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 297258 297258 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1600 SAMTools SNP 297452 297452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C4%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1600 SAMTools SNP 297778 297778 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C16%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1600 SAMTools SNP 298379 298379 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1600 SAMTools SNP 298419 298419 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1600 SAMTools SNP 298456 298456 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.092%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1600 SAMTools SNP 298495 298495 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.47%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold1600 SAMTools SNP 298921 298921 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1600 SAMTools SNP 299032 299032 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C46%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1600 SAMTools SNP 299211 299211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C22%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 299512 299512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1600 SAMTools SNP 299521 299521 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1600 SAMTools SNP 299542 299542 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1600 SAMTools SNP 299571 299571 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0057%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1600 SAMTools SNP 300047 300047 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1600 SAMTools SNP 300100 300100 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 300101 300101 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 300892 300892 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.41%2C0.0039%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1600 SAMTools SNP 300895 300895 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.55%2C0.0009%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1600 SAMTools SNP 300910 300910 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.095%2C0.031%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C127:99 scaffold1600 SAMTools SNP 300915 300915 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1600 SAMTools SNP 301158 301158 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1600 SAMTools SNP 301169 301169 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1600 SAMTools SNP 301618 301618 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1600 SAMTools SNP 301741 301741 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1600 SAMTools SNP 302112 302112 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.037%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1600 SAMTools SNP 302184 302184 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C241:99 scaffold1600 SAMTools SNP 304907 304907 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C15%2C18%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1600 SAMTools SNP 304949 304949 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C22%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C165:99 scaffold1600 SAMTools SNP 305682 305682 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 305687 305687 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1600 SAMTools SNP 306865 306865 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C24%2C8%2C13%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.077%2C1.6e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1600 SAMTools SNP 307261 307261 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1600 SAMTools SNP 307666 307666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1600 SAMTools SNP 308226 308226 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1600 SAMTools SNP 309013 309013 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1600 SAMTools SNP 310423 310423 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.62%3BPV4%3D1%2C0.0012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C35:38 scaffold1600 SAMTools SNP 311800 311800 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1600 SAMTools SNP 312775 312775 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold1601 SAMTools SNP 14462 14462 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1601 SAMTools SNP 14482 14482 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1601 SAMTools SNP 31869 31869 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold1601 SAMTools SNP 32185 32185 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1601 SAMTools SNP 33315 33315 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1601 SAMTools SNP 35466 35466 10.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold1601 SAMTools SNP 50482 50482 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1601 SAMTools SNP 50713 50713 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1601 SAMTools SNP 50720 50720 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.2%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C107:99 scaffold1601 SAMTools SNP 51335 51335 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1601 SAMTools SNP 53255 53255 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1601 SAMTools SNP 55579 55579 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1601 SAMTools SNP 55960 55960 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1601 SAMTools SNP 56008 56008 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1601 SAMTools SNP 56461 56461 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1601 SAMTools SNP 56476 56476 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1601 SAMTools SNP 56585 56585 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C115:41 scaffold1601 SAMTools SNP 57162 57162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1601 SAMTools SNP 57505 57505 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1601 SAMTools SNP 60794 60794 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1601 SAMTools SNP 62723 62723 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C23%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2.8e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1601 SAMTools SNP 64031 64031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.027%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 64061 64061 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C15%2C10%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1601 SAMTools SNP 66117 66117 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0046%2C0.13%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1601 SAMTools SNP 67170 67170 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C18%2C0:33 scaffold1601 SAMTools SNP 68489 68489 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1601 SAMTools SNP 68600 68600 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C19%2C1%3BMQ%3D49%3BFQ%3D213%3BPV4%3D1%2C0.1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1601 SAMTools SNP 68691 68691 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C17%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.23%2C0.0016%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1601 SAMTools SNP 69114 69114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 70076 70076 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.31%2C5.9e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1601 SAMTools SNP 79972 79972 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.043%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C104:99 scaffold1601 SAMTools SNP 80865 80865 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C75%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1601 SAMTools SNP 82134 82134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C34%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1601 SAMTools SNP 82197 82197 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1601 SAMTools SNP 82664 82664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.021%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1601 SAMTools SNP 82700 82700 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C11%2C32%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1601 SAMTools SNP 82736 82736 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C43%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 84346 84346 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.038%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1601 SAMTools SNP 86978 86978 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 87054 87054 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 88014 88014 6.21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.64%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C23:27 scaffold1601 SAMTools SNP 89907 89907 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.052%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 91646 91646 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C70%2C1%2C25%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1601 SAMTools SNP 92164 92164 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 96691 96691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1601 SAMTools SNP 96830 96830 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1601 SAMTools SNP 98102 98102 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1601 SAMTools SNP 98307 98307 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.068%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1601 SAMTools SNP 99097 99097 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C27%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1601 SAMTools SNP 99238 99238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 99704 99704 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C5%3BMQ%3D46%3BFQ%3D24%3BPV4%3D0.021%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C192:54 scaffold1601 SAMTools SNP 99800 99800 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C1%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1601 SAMTools SNP 102107 102107 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1601 SAMTools SNP 102455 102455 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1601 SAMTools SNP 103013 103013 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1601 SAMTools SNP 103140 103140 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.35%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1601 SAMTools SNP 103573 103573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1601 SAMTools SNP 103636 103636 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C245:63 scaffold1601 SAMTools SNP 103639 103639 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1601 SAMTools SNP 104927 104927 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C250:60 scaffold1601 SAMTools SNP 104933 104933 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1601 SAMTools SNP 105014 105014 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1601 SAMTools SNP 105283 105283 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1601 SAMTools SNP 109235 109235 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1601 SAMTools SNP 111096 111096 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1601 SAMTools SNP 111099 111099 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1601 SAMTools SNP 113745 113745 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1601 SAMTools SNP 113758 113758 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1601 SAMTools SNP 114776 114776 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1601 SAMTools SNP 115102 115102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1601 SAMTools SNP 115582 115582 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1601 SAMTools SNP 115587 115587 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1601 SAMTools SNP 117212 117212 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D56.9%3BPV4%3D1%2C4.6e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C88:87 scaffold1601 SAMTools SNP 117274 117274 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.05%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1601 SAMTools SNP 117721 117721 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C7%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.43%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1601 SAMTools SNP 117733 117733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1601 SAMTools SNP 118777 118777 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1601 SAMTools SNP 119231 119231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1601 SAMTools SNP 119243 119243 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.67%2C0.24%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1601 SAMTools SNP 119366 119366 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C21%2C0:39 scaffold1601 SAMTools SNP 120095 120095 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1601 SAMTools SNP 120112 120112 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1601 SAMTools SNP 120891 120891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1601 SAMTools SNP 121543 121543 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C127:99 scaffold1601 SAMTools SNP 121567 121567 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1601 SAMTools SNP 122326 122326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1601 SAMTools SNP 122368 122368 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.29%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1601 SAMTools SNP 122867 122867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1601 SAMTools SNP 122885 122885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1601 SAMTools SNP 123386 123386 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.024%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold1601 SAMTools SNP 123690 123690 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1601 SAMTools SNP 123711 123711 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1601 SAMTools SNP 125003 125003 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.44%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1601 SAMTools SNP 125012 125012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1601 SAMTools SNP 125226 125226 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C5%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.43%2C0.098%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1601 SAMTools SNP 125253 125253 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C3%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1601 SAMTools SNP 125907 125907 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1601 SAMTools SNP 125933 125933 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1601 SAMTools SNP 125947 125947 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1601 SAMTools SNP 125973 125973 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1601 SAMTools SNP 125978 125978 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1601 SAMTools SNP 126611 126611 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1601 SAMTools SNP 128157 128157 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1601 SAMTools SNP 128159 128159 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1601 SAMTools SNP 129249 129249 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1601 SAMTools SNP 131910 131910 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.16%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C213:99 scaffold1601 SAMTools SNP 134888 134888 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1601 SAMTools SNP 135494 135494 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1601 SAMTools SNP 135671 135671 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 135761 135761 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0019%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1601 SAMTools SNP 135971 135971 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 136049 136049 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C14%2C19%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.28%2C7.3e-16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1601 SAMTools SNP 137185 137185 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.00086%2C1.7e-07%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1601 SAMTools SNP 137205 137205 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.36%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1601 SAMTools SNP 137587 137587 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C5%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0089%2C0.41%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1601 SAMTools SNP 138626 138626 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1601 SAMTools SNP 139401 139401 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1601 SAMTools SNP 139508 139508 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C7%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1601 SAMTools SNP 139683 139683 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C7%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1601 SAMTools SNP 139870 139870 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.3%2C8.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1601 SAMTools SNP 142420 142420 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold1601 SAMTools SNP 142582 142582 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1601 SAMTools SNP 144600 144600 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C127:62 scaffold1601 SAMTools SNP 144621 144621 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold1601 SAMTools SNP 146708 146708 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1601 SAMTools SNP 146749 146749 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1601 SAMTools SNP 146773 146773 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1601 SAMTools SNP 148444 148444 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1601 SAMTools SNP 163857 163857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C244%2C0%3BMQ%3D33%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1601 SAMTools SNP 166327 166327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C3%2C102%2C2%3BMQ%3D38%3BFQ%3D-256%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1601 SAMTools SNP 167936 167936 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1601 SAMTools SNP 167972 167972 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.36%2C0.21%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold1601 SAMTools SNP 168904 168904 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C2%3BMQ%3D35%3BFQ%3D37%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C143:67 scaffold1601 SAMTools SNP 168926 168926 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C6%3BMQ%3D30%3BFQ%3D27%3BPV4%3D0.23%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C170:57 scaffold1601 SAMTools SNP 169900 169900 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C9%3BMQ%3D38%3BFQ%3D144%3BPV4%3D0.65%2C1%2C0.043%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C245:99 scaffold1601 SAMTools SNP 170362 170362 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D3%2C2%2C11%2C0%3BMQ%3D41%3BFQ%3D3.02%3BPV4%3D0.083%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C27:30 scaffold1601 SAMTools SNP 171679 171679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C219%2C78%3BMQ%3D46%3BFQ%3D64%3BPV4%3D0.086%2C1%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1601 SAMTools SNP 187197 187197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C226%2C0%3BMQ%3D31%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1601 SAMTools SNP 187487 187487 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C8%2C257%2C0%3BMQ%3D33%3BFQ%3D201%3BPV4%3D0.00054%2C1%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1601 SAMTools SNP 187535 187535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C4%2C26%2C177%3BMQ%3D34%3BFQ%3D-282%3BPV4%3D0.18%2C0.031%2C0.03%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1601 SAMTools SNP 187598 187598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C267%2C80%2C38%3BMQ%3D36%3BFQ%3D202%3BPV4%3D1.4e-50%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1601 SAMTools SNP 200136 200136 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1601 SAMTools SNP 200653 200653 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1601 SAMTools SNP 200686 200686 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1601 SAMTools SNP 200695 200695 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1601 SAMTools SNP 200710 200710 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1601 SAMTools SNP 200722 200722 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1601 SAMTools SNP 200755 200755 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold1601 SAMTools SNP 201423 201423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1601 SAMTools SNP 201641 201641 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.0061%2C0.1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1601 SAMTools SNP 201646 201646 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1601 SAMTools SNP 201653 201653 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1601 SAMTools SNP 204262 204262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 204627 204627 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C27%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.29%2C0.37%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C226:99 scaffold1601 SAMTools SNP 205094 205094 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1601 SAMTools SNP 205100 205100 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1601 SAMTools SNP 205413 205413 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C25%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 206121 206121 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 208021 208021 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.056%2C0.049%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1601 SAMTools SNP 208045 208045 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1601 SAMTools SNP 208111 208111 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1601 SAMTools SNP 208592 208592 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.28%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1601 SAMTools SNP 208593 208593 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1601 SAMTools SNP 208612 208612 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1601 SAMTools SNP 210559 210559 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1601 SAMTools SNP 210611 210611 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C11%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1601 SAMTools SNP 210628 210628 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.1%2C0.14%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1601 SAMTools SNP 211113 211113 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 211179 211179 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C8%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.74%2C2.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1601 SAMTools SNP 211229 211229 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C4%2C6%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1601 SAMTools SNP 211585 211585 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.31%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1601 SAMTools SNP 215117 215117 204 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D31%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C111%2C0:99 scaffold1601 SAMTools SNP 215123 215123 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D31%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C114%2C0:99 scaffold1601 SAMTools SNP 226944 226944 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1601 SAMTools SNP 226960 226960 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold1601 SAMTools SNP 229710 229710 50.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1601 SAMTools SNP 241799 241799 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C82:28 scaffold1601 SAMTools SNP 241933 241933 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C0.18%2C0.089%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold1601 SAMTools SNP 244439 244439 13.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1601 SAMTools SNP 247854 247854 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold1601 SAMTools SNP 248018 248018 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1601 SAMTools SNP 248996 248996 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold1601 SAMTools SNP 249293 249293 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C3.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C129:44 scaffold1601 SAMTools SNP 252522 252522 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C215:99 scaffold1601 SAMTools SNP 252799 252799 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold1601 SAMTools SNP 252853 252853 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 22679 22679 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.31%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1603 SAMTools SNP 22977 22977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0095%2C0.4%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1603 SAMTools SNP 22992 22992 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.028%2C9.6e-05%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1603 SAMTools SNP 23002 23002 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C7%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.015%2C1.9e-08%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1603 SAMTools SNP 23245 23245 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1603 SAMTools SNP 23258 23258 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C7%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1603 SAMTools SNP 23288 23288 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1603 SAMTools SNP 24664 24664 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 24679 24679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1603 SAMTools SNP 24760 24760 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C57:60 scaffold1603 SAMTools SNP 24771 24771 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 25174 25174 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 25175 25175 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 25667 25667 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D44%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C51%2C0:99 scaffold1603 SAMTools SNP 25706 25706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D45%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1603 SAMTools SNP 31404 31404 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1603 SAMTools SNP 31892 31892 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 31904 31904 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 32257 32257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 32296 32296 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 33320 33320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 33563 33563 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1603 SAMTools SNP 34389 34389 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C18:21 scaffold1603 SAMTools SNP 34413 34413 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 34426 34426 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1603 SAMTools SNP 34954 34954 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 34978 34978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1603 SAMTools SNP 34993 34993 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1603 SAMTools SNP 35452 35452 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C7%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1603 SAMTools SNP 35482 35482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1603 SAMTools SNP 36052 36052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1603 SAMTools SNP 36424 36424 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1603 SAMTools SNP 36455 36455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C13%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1603 SAMTools SNP 36583 36583 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1603 SAMTools SNP 38938 38938 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C52%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1603 SAMTools SNP 39043 39043 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1603 SAMTools SNP 39487 39487 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1603 SAMTools SNP 39522 39522 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1603 SAMTools SNP 39784 39784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1603 SAMTools SNP 39805 39805 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1603 SAMTools SNP 39837 39837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1603 SAMTools SNP 40409 40409 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0023%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1603 SAMTools SNP 40430 40430 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.00041%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C240:99 scaffold1603 SAMTools SNP 40457 40457 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.00012%2C0.037%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C217:99 scaffold1603 SAMTools SNP 40523 40523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1603 SAMTools SNP 40885 40885 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1603 SAMTools SNP 40930 40930 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0062%2C2e-06%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1603 SAMTools SNP 41845 41845 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold1603 SAMTools SNP 41864 41864 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1603 SAMTools SNP 43355 43355 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1603 SAMTools SNP 43769 43769 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1603 SAMTools SNP 43793 43793 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold1603 SAMTools SNP 45478 45478 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1603 SAMTools SNP 45543 45543 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C8%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.51%2C6.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1603 SAMTools SNP 45610 45610 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.17%2C0.023%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1603 SAMTools SNP 46576 46576 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1603 SAMTools SNP 46579 46579 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1603 SAMTools SNP 46603 46603 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1603 SAMTools SNP 60911 60911 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1603 SAMTools SNP 68191 68191 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 68203 68203 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 68217 68217 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1603 SAMTools SNP 68440 68440 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1603 SAMTools SNP 68455 68455 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1603 SAMTools SNP 68512 68512 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1603 SAMTools SNP 69076 69076 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1603 SAMTools SNP 71121 71121 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 73334 73334 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1603 SAMTools SNP 76596 76596 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C78%2C0:99 scaffold1603 SAMTools SNP 77069 77069 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1603 SAMTools SNP 77709 77709 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C0.0004%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C171:99 scaffold1603 SAMTools SNP 78921 78921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1603 SAMTools SNP 79056 79056 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C21%2C0:39 scaffold1603 SAMTools SNP 79800 79800 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1603 SAMTools SNP 79898 79898 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1603 SAMTools SNP 79965 79965 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.62%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1603 SAMTools SNP 79983 79983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1.3e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 80033 80033 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.039%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1603 SAMTools SNP 80777 80777 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 81160 81160 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C61%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 81522 81522 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.49%2C9.2e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1603 SAMTools SNP 81579 81579 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C237:91 scaffold1603 SAMTools SNP 81603 81603 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold1603 SAMTools SNP 82109 82109 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1603 SAMTools SNP 82475 82475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1603 SAMTools SNP 82655 82655 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.053%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1603 SAMTools SNP 82771 82771 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 82822 82822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1603 SAMTools SNP 89075 89075 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1603 SAMTools SNP 89873 89873 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1603 SAMTools SNP 89889 89889 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1603 SAMTools SNP 89958 89958 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1603 SAMTools SNP 89982 89982 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 90204 90204 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1603 SAMTools SNP 90224 90224 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1603 SAMTools SNP 90267 90267 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 90508 90508 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 92665 92665 197 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1603 SAMTools SNP 92716 92716 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 92988 92988 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 93673 93673 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1603 SAMTools SNP 93680 93680 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1603 SAMTools SNP 94000 94000 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 94078 94078 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C9%2C0:16 scaffold1603 SAMTools SNP 94096 94096 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C12%2C0:21 scaffold1603 SAMTools SNP 94123 94123 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C38:41 scaffold1603 SAMTools SNP 94372 94372 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1603 SAMTools SNP 94444 94444 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1603 SAMTools SNP 94479 94479 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1603 SAMTools SNP 95297 95297 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1603 SAMTools SNP 95312 95312 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.22%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 103573 103573 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 114118 114118 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.098%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C200:99 scaffold1603 SAMTools SNP 115772 115772 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0017%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1603 SAMTools SNP 116942 116942 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.026%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1603 SAMTools SNP 129898 129898 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1603 SAMTools SNP 132949 132949 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 132967 132967 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 134283 134283 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1603 SAMTools SNP 135718 135718 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.15%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1603 SAMTools SNP 135771 135771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1603 SAMTools SNP 135798 135798 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 135949 135949 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.052%2C0.009%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1603 SAMTools SNP 138174 138174 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 138204 138204 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1603 SAMTools SNP 139686 139686 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.59%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C245:99 scaffold1603 SAMTools SNP 139943 139943 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.56%2C0.029%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1603 SAMTools SNP 140342 140342 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1603 SAMTools SNP 140389 140389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1603 SAMTools SNP 140412 140412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1603 SAMTools SNP 141654 141654 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1603 SAMTools SNP 142194 142194 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 142490 142490 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1603 SAMTools SNP 142627 142627 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C199:99 scaffold1603 SAMTools SNP 143281 143281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1603 SAMTools SNP 143562 143562 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1603 SAMTools SNP 143622 143622 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C48:51 scaffold1603 SAMTools SNP 143649 143649 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.088%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1603 SAMTools SNP 143687 143687 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C62:65 scaffold1603 SAMTools SNP 144557 144557 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C6.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1603 SAMTools SNP 156866 156866 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1603 SAMTools SNP 166834 166834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1603 SAMTools SNP 167163 167163 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D0.19%2C0.28%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold1603 SAMTools SNP 167169 167169 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C23%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D2.6e-10%2C1%2C1%2C4.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1603 SAMTools SNP 167727 167727 164 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.00042%2C1%2C1%2C7.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1603 SAMTools SNP 167730 167730 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C4%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.13%2C0.087%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold1603 SAMTools SNP 168459 168459 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 168486 168486 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C68%2C95%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-16%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 168699 168699 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C26%2C9%3BMQ%3D50%3BFQ%3D193%3BPV4%3D4.1e-08%2C7.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1603 SAMTools SNP 168709 168709 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C70%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1603 SAMTools SNP 168759 168759 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1603 SAMTools SNP 169148 169148 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1603 SAMTools SNP 169172 169172 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.00042%2C2.8e-13%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1603 SAMTools SNP 170024 170024 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1603 SAMTools SNP 170253 170253 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C33%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 170605 170605 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C45%2C10%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 171349 171349 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1603 SAMTools SNP 171568 171568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C39%2C42%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 171661 171661 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1603 SAMTools SNP 172334 172334 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C18%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1603 SAMTools SNP 172787 172787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C46%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1603 SAMTools SNP 172802 172802 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C32%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 172898 172898 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C16%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 173445 173445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C18%2C29%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.003%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold1603 SAMTools SNP 173484 173484 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C14%2C30%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.092%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1603 SAMTools SNP 175296 175296 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C33%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.0039%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1603 SAMTools SNP 180827 180827 79.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C15%2C0:27 scaffold1603 SAMTools SNP 180930 180930 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold1603 SAMTools SNP 180936 180936 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.31%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C116:99 scaffold1603 SAMTools SNP 181422 181422 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.38%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1603 SAMTools SNP 184923 184923 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1603 SAMTools SNP 186090 186090 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1603 SAMTools SNP 186120 186120 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.048%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C141:69 scaffold1603 SAMTools SNP 186135 186135 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1603 SAMTools SNP 189944 189944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1603 SAMTools SNP 190083 190083 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C197:99 scaffold1603 SAMTools SNP 192108 192108 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1603 SAMTools SNP 192211 192211 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C2.2e-19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C227:44 scaffold1603 SAMTools SNP 192859 192859 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold1603 SAMTools SNP 193809 193809 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold1603 SAMTools SNP 193815 193815 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1603 SAMTools SNP 193885 193885 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1603 SAMTools SNP 199446 199446 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1603 SAMTools SNP 203219 203219 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1603 SAMTools SNP 205296 205296 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold1603 SAMTools SNP 205936 205936 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C32:35 scaffold1603 SAMTools SNP 216119 216119 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D0.42%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C73:74 scaffold1603 SAMTools SNP 216240 216240 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C24%2C0:45 scaffold1603 SAMTools SNP 216872 216872 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 216968 216968 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1603 SAMTools SNP 216984 216984 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1603 SAMTools SNP 216998 216998 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 262555 262555 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1603 SAMTools SNP 263910 263910 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1603 SAMTools SNP 264089 264089 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1603 SAMTools SNP 264158 264158 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1603 SAMTools SNP 317448 317448 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1603 SAMTools SNP 319870 319870 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.44%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C136:99 scaffold1603 SAMTools SNP 319912 319912 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1603 SAMTools SNP 320600 320600 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1603 SAMTools SNP 320655 320655 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1603 SAMTools SNP 321071 321071 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C1%3BMQ%3D31%3BFQ%3D34%3BPV4%3D1%2C0.4%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C100:64 scaffold1603 SAMTools SNP 321110 321110 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D43%3BFQ%3D12.7%3BPV4%3D0.33%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C42:42 scaffold1603 SAMTools SNP 321206 321206 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1603 SAMTools SNP 336505 336505 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1603 SAMTools SNP 337531 337531 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1603 SAMTools SNP 337864 337864 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1605 SAMTools SNP 1422 1422 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 1475 1475 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C135:72 scaffold1605 SAMTools SNP 11832 11832 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1605 SAMTools SNP 12916 12916 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 13393 13393 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 17864 17864 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 18159 18159 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 18319 18319 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 18586 18586 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold1605 SAMTools SNP 18646 18646 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1605 SAMTools SNP 18925 18925 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 19281 19281 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1605 SAMTools SNP 19338 19338 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1605 SAMTools SNP 19368 19368 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1605 SAMTools SNP 26186 26186 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 26233 26233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 51446 51446 38.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1605 SAMTools SNP 51594 51594 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 51627 51627 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 52668 52668 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 53214 53214 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3e-09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 53542 53542 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1605 SAMTools SNP 53584 53584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 63403 63403 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 63433 63433 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 63732 63732 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1605 SAMTools SNP 64038 64038 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1605 SAMTools SNP 64041 64041 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1605 SAMTools SNP 68205 68205 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 73297 73297 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1605 SAMTools SNP 73333 73333 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D39%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C54%2C0:99 scaffold1605 SAMTools SNP 76047 76047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C1%2C113%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.33%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1605 SAMTools SNP 76118 76118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1605 SAMTools SNP 76143 76143 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C175%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C255%2C0:99 scaffold1605 SAMTools SNP 76601 76601 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C13%3BMQ%3D38%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 76780 76780 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C33%2C165%2C3%3BMQ%3D48%3BFQ%3D225%3BPV4%3D4.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 76818 76818 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 77014 77014 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C57%2C0:99 scaffold1605 SAMTools SNP 77028 77028 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1605 SAMTools SNP 77043 77043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1605 SAMTools SNP 77050 77050 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.091%2C0.29%2C1%2C4.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C234:99 scaffold1605 SAMTools SNP 77436 77436 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1605 SAMTools SNP 77532 77532 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1605 SAMTools SNP 77535 77535 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1605 SAMTools SNP 78091 78091 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C29%2C55%2C34%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.53%2C0.099%2C0.32%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 78375 78375 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C61%2C64%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 78591 78591 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C199%2C0%2C58%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C1%2C0.083%2C2.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1605 SAMTools SNP 78633 78633 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0018%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1605 SAMTools SNP 78654 78654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1605 SAMTools SNP 78957 78957 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C13%2C28%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.52%2C0.48%2C1%2C2.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1605 SAMTools SNP 81263 81263 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C61%2C59%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D2.7e-05%2C0.0024%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1605 SAMTools SNP 81477 81477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C253%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 87711 87711 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1605 SAMTools SNP 87936 87936 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1605 SAMTools SNP 88289 88289 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1605 SAMTools SNP 88316 88316 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 88485 88485 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 90044 90044 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 90647 90647 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 91298 91298 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C60%2C0:99 scaffold1605 SAMTools SNP 91325 91325 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.39%2C5.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1605 SAMTools SNP 92112 92112 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold1605 SAMTools SNP 92639 92639 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C30%2C0:57 scaffold1605 SAMTools SNP 92865 92865 52.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold1605 SAMTools SNP 92945 92945 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C48%2C0:93 scaffold1605 SAMTools SNP 93302 93302 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1605 SAMTools SNP 93852 93852 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1605 SAMTools SNP 94153 94153 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C63%2C0:99 scaffold1605 SAMTools SNP 94751 94751 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C39%2C0:75 scaffold1605 SAMTools SNP 97048 97048 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C63%2C0:99 scaffold1605 SAMTools SNP 97307 97307 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.17%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C183:99 scaffold1605 SAMTools SNP 97330 97330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 97453 97453 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D31.3%3BPV4%3D1%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C60:61 scaffold1605 SAMTools SNP 98476 98476 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.68%2C3.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1605 SAMTools SNP 99394 99394 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.64%2C4.9e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1605 SAMTools SNP 99464 99464 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold1605 SAMTools SNP 99809 99809 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C117%2C0:99 scaffold1605 SAMTools SNP 99889 99889 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1605 SAMTools SNP 99910 99910 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C78%2C0:99 scaffold1605 SAMTools SNP 100384 100384 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C22%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C141%2C0:99 scaffold1605 SAMTools SNP 100450 100450 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C60%2C0:99 scaffold1605 SAMTools SNP 100653 100653 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C1%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.00011%2C0.00068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C240:99 scaffold1605 SAMTools SNP 100684 100684 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 105575 105575 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C6.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C152:82 scaffold1605 SAMTools SNP 106332 106332 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1605 SAMTools SNP 109154 109154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 109211 109211 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 109943 109943 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.00016%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1605 SAMTools SNP 110012 110012 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1605 SAMTools SNP 110042 110042 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.13%2C0.1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1605 SAMTools SNP 110759 110759 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D76.3%3BPV4%3D1%2C0.072%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C105:99 scaffold1605 SAMTools SNP 112572 112572 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 112575 112575 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 112581 112581 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 115809 115809 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1605 SAMTools SNP 121333 121333 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 121354 121354 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 121417 121417 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 121451 121451 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C90:30 scaffold1605 SAMTools SNP 123512 123512 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C166:99 scaffold1605 SAMTools SNP 130901 130901 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C34%2C0%2C25%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1605 SAMTools SNP 130903 130903 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C34%2C0%2C25%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1605 SAMTools SNP 135438 135438 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C38%2C0%2C30%3BMQ%3D50%3BFQ%3D42%3BPV4%3D2.1e-08%2C1%2C1%2C2.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1605 SAMTools SNP 136366 136366 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 138132 138132 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C65%2C8%2C5%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.00071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1605 SAMTools SNP 138159 138159 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.41%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 138208 138208 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C9%2C11%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0044%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1605 SAMTools SNP 138243 138243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1605 SAMTools SNP 138703 138703 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1605 SAMTools SNP 138706 138706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 138742 138742 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1605 SAMTools SNP 140662 140662 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C47%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1605 SAMTools SNP 141254 141254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C59%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1605 SAMTools SNP 141269 141269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C59%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1605 SAMTools SNP 141341 141341 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C10%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0012%2C7.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1605 SAMTools SNP 141350 141350 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.17%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1605 SAMTools SNP 141401 141401 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1605 SAMTools SNP 145985 145985 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1605 SAMTools SNP 146052 146052 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C69%2C0:99 scaffold1605 SAMTools SNP 148512 148512 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 149650 149650 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.00088%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1605 SAMTools SNP 150671 150671 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C17%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C2.1e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1605 SAMTools SNP 151158 151158 41.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1605 SAMTools SNP 167090 167090 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1605 SAMTools SNP 167352 167352 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.51%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C236:99 scaffold1605 SAMTools SNP 167545 167545 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 168060 168060 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 169678 169678 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C38:41 scaffold1605 SAMTools SNP 172285 172285 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1605 SAMTools SNP 172935 172935 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1605 SAMTools SNP 173098 173098 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D0.33%2C0.46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C38:41 scaffold1605 SAMTools SNP 173161 173161 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 173502 173502 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 173525 173525 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 174792 174792 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 175956 175956 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 176016 176016 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 176079 176079 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 176635 176635 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 176647 176647 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 176777 176777 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 177717 177717 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1605 SAMTools SNP 179238 179238 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 182094 182094 40.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1605 SAMTools SNP 182485 182485 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1605 SAMTools SNP 183220 183220 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.07%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1605 SAMTools SNP 184448 184448 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1605 SAMTools SNP 185994 185994 36.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1605 SAMTools SNP 186004 186004 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1605 SAMTools SNP 186616 186616 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 186822 186822 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1605 SAMTools SNP 188910 188910 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 191468 191468 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 191788 191788 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 191998 191998 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1605 SAMTools SNP 192169 192169 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 192785 192785 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 193128 193128 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 193489 193489 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 194176 194176 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C32:35 scaffold1605 SAMTools SNP 194541 194541 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1605 SAMTools SNP 194653 194653 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1605 SAMTools SNP 195045 195045 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1605 SAMTools SNP 195103 195103 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 195562 195562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 195580 195580 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 195736 195736 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 196102 196102 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 196559 196559 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 197068 197068 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.09%3BPV4%3D0.14%2C1.9e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C29:32 scaffold1605 SAMTools SNP 197812 197812 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1605 SAMTools SNP 199113 199113 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 199131 199131 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 202609 202609 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 202924 202924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 203276 203276 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1605 SAMTools SNP 206091 206091 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1605 SAMTools SNP 206148 206148 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1605 SAMTools SNP 206158 206158 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 209519 209519 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1605 SAMTools SNP 209811 209811 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 210502 210502 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 210757 210757 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 211388 211388 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 211544 211544 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 211654 211654 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 211851 211851 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 212288 212288 67.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold1605 SAMTools SNP 212398 212398 16.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1605 SAMTools SNP 212702 212702 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 212735 212735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 216942 216942 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1605 SAMTools SNP 216998 216998 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1605 SAMTools SNP 217175 217175 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1605 SAMTools SNP 217316 217316 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1605 SAMTools SNP 217762 217762 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1605 SAMTools SNP 217793 217793 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 217814 217814 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 220968 220968 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1.2e-08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C155:99 scaffold1605 SAMTools SNP 222225 222225 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.58%2C0.3%2C1%2C5.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1605 SAMTools SNP 222253 222253 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.011%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C183:37 scaffold1605 SAMTools SNP 222327 222327 165 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C57%2C204%2C0%2C198:27 scaffold1605 SAMTools SNP 222330 222330 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1605 SAMTools SNP 222724 222724 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.9e-12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C216:62 scaffold1605 SAMTools SNP 224766 224766 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.047%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C141:99 scaffold1605 SAMTools SNP 225801 225801 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.5%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C231:36 scaffold1605 SAMTools SNP 225825 225825 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C150:36 scaffold1605 SAMTools SNP 226492 226492 90 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1605 SAMTools SNP 228140 228140 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold1605 SAMTools SNP 231514 231514 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C7.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1605 SAMTools SNP 231619 231619 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.51%2C6.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1605 SAMTools SNP 231766 231766 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.35%2C0.025%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1605 SAMTools SNP 231788 231788 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1605 SAMTools SNP 232069 232069 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1605 SAMTools SNP 232357 232357 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C6.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C190:28 scaffold1605 SAMTools SNP 232747 232747 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 232750 232750 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1605 SAMTools SNP 233710 233710 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1605 SAMTools SNP 233773 233773 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1605 SAMTools SNP 234268 234268 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold1605 SAMTools SNP 237598 237598 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C221:36 scaffold1605 SAMTools SNP 238042 238042 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C18%2C0:33 scaffold1605 SAMTools SNP 238369 238369 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9.8e-06%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C121:48 scaffold1605 SAMTools SNP 238739 238739 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 238778 238778 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C35:38 scaffold1605 SAMTools SNP 239087 239087 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.56%2C9.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C213:71 scaffold1605 SAMTools SNP 239426 239426 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 239477 239477 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 240477 240477 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C21%2C0:39 scaffold1605 SAMTools SNP 242763 242763 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1605 SAMTools SNP 244209 244209 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1605 SAMTools SNP 244737 244737 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1605 SAMTools SNP 244824 244824 47.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1605 SAMTools SNP 245250 245250 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1605 SAMTools SNP 245333 245333 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 245371 245371 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 246060 246060 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-7.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C20:23 scaffold1605 SAMTools SNP 246238 246238 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold1605 SAMTools SNP 246294 246294 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 246694 246694 83.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C18%2C0:33 scaffold1605 SAMTools SNP 246728 246728 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.4%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C171:40 scaffold1605 SAMTools SNP 246888 246888 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.3%2C0.061%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1605 SAMTools SNP 247112 247112 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1605 SAMTools SNP 247116 247116 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 247142 247142 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.02%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C146:67 scaffold1605 SAMTools SNP 247155 247155 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C127:99 scaffold1605 SAMTools SNP 247481 247481 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C236:99 scaffold1605 SAMTools SNP 247493 247493 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold1605 SAMTools SNP 247524 247524 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1605 SAMTools SNP 247546 247546 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold1605 SAMTools SNP 247677 247677 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.0084%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold1605 SAMTools SNP 247686 247686 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold1605 SAMTools SNP 248141 248141 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold1605 SAMTools SNP 248159 248159 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold1605 SAMTools SNP 248213 248213 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1605 SAMTools SNP 248228 248228 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 248954 248954 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1605 SAMTools SNP 250193 250193 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C135:46 scaffold1605 SAMTools SNP 250525 250525 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C76:60 scaffold1605 SAMTools SNP 250582 250582 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold1605 SAMTools SNP 250627 250627 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C8.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C104:56 scaffold1605 SAMTools SNP 251102 251102 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1605 SAMTools SNP 251383 251383 55.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold1605 SAMTools SNP 251627 251627 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1605 SAMTools SNP 252799 252799 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold1605 SAMTools SNP 253259 253259 9.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1605 SAMTools SNP 253505 253505 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1605 SAMTools SNP 253900 253900 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C54%2C0:99 scaffold1605 SAMTools SNP 254263 254263 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C39%2C0:75 scaffold1605 SAMTools SNP 254879 254879 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C18%2C0:33 scaffold1605 SAMTools SNP 255253 255253 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.16%2C1.1e-19%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C235:56 scaffold1605 SAMTools SNP 255760 255760 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C42%2C0:77 scaffold1605 SAMTools SNP 255937 255937 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1605 SAMTools SNP 256689 256689 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 257028 257028 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4e-25%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1605 SAMTools SNP 257574 257574 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1605 SAMTools SNP 257580 257580 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1605 SAMTools SNP 261754 261754 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1605 SAMTools SNP 261758 261758 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C74:77 scaffold1605 SAMTools SNP 264033 264033 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C13%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C5.1e-15%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1605 SAMTools SNP 265008 265008 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00034%2C6.8e-15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1605 SAMTools SNP 265485 265485 56.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold1605 SAMTools SNP 265696 265696 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C105%2C0:99 scaffold1605 SAMTools SNP 265998 265998 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.13%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1605 SAMTools SNP 266299 266299 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold1605 SAMTools SNP 266371 266371 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.51%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1605 SAMTools SNP 266949 266949 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold1605 SAMTools SNP 267476 267476 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.002%2C3.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1605 SAMTools SNP 267900 267900 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1605 SAMTools SNP 268070 268070 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C66%2C0:99 scaffold1605 SAMTools SNP 268711 268711 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.56%2C2.8e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1605 SAMTools SNP 269427 269427 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C21%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00036%2C9.3e-12%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1605 SAMTools SNP 269628 269628 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C26%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.27%2C6.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1605 SAMTools SNP 270232 270232 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.55%2C1.8e-11%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1605 SAMTools SNP 270281 270281 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1605 SAMTools SNP 273794 273794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1605 SAMTools SNP 273797 273797 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1605 SAMTools SNP 273923 273923 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 274008 274008 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 274072 274072 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 274741 274741 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1605 SAMTools SNP 274855 274855 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1605 SAMTools SNP 275107 275107 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 275151 275151 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C27%2C0:50 scaffold1605 SAMTools SNP 275219 275219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C77%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 275238 275238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 275505 275505 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C11%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1605 SAMTools SNP 275588 275588 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C96%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C8.3e-100%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C231:99 scaffold1605 SAMTools SNP 276535 276535 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 276853 276853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1605 SAMTools SNP 277235 277235 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 277256 277256 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1605 SAMTools SNP 281262 281262 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C119%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6.5e-08%2C0.46%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C255%2C0:99 scaffold1605 SAMTools SNP 283053 283053 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold1605 SAMTools SNP 283113 283113 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C14%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.66%2C2.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1605 SAMTools SNP 283473 283473 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C15%2C0:27 scaffold1605 SAMTools SNP 283509 283509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 283891 283891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 283921 283921 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 284642 284642 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 284708 284708 88.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold1605 SAMTools SNP 284780 284780 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1605 SAMTools SNP 284916 284916 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C198:99 scaffold1605 SAMTools SNP 284919 284919 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C254:99 scaffold1605 SAMTools SNP 284952 284952 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1605 SAMTools SNP 286507 286507 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 286650 286650 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 286719 286719 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1605 SAMTools SNP 288471 288471 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 289511 289511 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C4%3BMQ%3D45%3BFQ%3D179%3BPV4%3D0.61%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C233:99 scaffold1605 SAMTools SNP 290164 290164 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D47%3BFQ%3D53%3BPV4%3D1%2C0.34%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C80:83 scaffold1605 SAMTools SNP 290381 290381 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C226:63 scaffold1605 SAMTools SNP 293643 293643 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 293649 293649 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 293966 293966 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 296712 296712 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1605 SAMTools SNP 296716 296716 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 300430 300430 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1605 SAMTools SNP 301709 301709 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 306180 306180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold1605 SAMTools SNP 312074 312074 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 312137 312137 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C16%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1605 SAMTools SNP 312152 312152 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 312158 312158 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 312513 312513 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C0.39%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 313271 313271 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1605 SAMTools SNP 313280 313280 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C9%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1605 SAMTools SNP 314038 314038 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1605 SAMTools SNP 314158 314158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1605 SAMTools SNP 314450 314450 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.67%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1605 SAMTools SNP 314469 314469 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 314552 314552 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C21%2C43%2C35%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00062%2C4.8e-176%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1605 SAMTools SNP 314657 314657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C140%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 315031 315031 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C102%2C18%3BMQ%3D19%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold1605 SAMTools SNP 324186 324186 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C101:40 scaffold1605 SAMTools SNP 324192 324192 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1605 SAMTools SNP 335019 335019 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold1605 SAMTools SNP 335042 335042 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1605 SAMTools SNP 335104 335104 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D2.2e-05%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1605 SAMTools SNP 338151 338151 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C31%2C12%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.08%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold1605 SAMTools SNP 338857 338857 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.49%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 338880 338880 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D32%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.004%2C0.037%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1605 SAMTools SNP 338953 338953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C25%2C17%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.27%2C0.26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold1605 SAMTools SNP 340124 340124 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.063%2C0.0021%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1605 SAMTools SNP 340896 340896 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1605 SAMTools SNP 340916 340916 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold1605 SAMTools SNP 340967 340967 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 341023 341023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 341046 341046 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 344019 344019 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 344558 344558 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 344590 344590 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C231:99 scaffold1605 SAMTools SNP 345280 345280 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 345429 345429 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1605 SAMTools SNP 346361 346361 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C248:99 scaffold1605 SAMTools SNP 346421 346421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C33%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1605 SAMTools SNP 346817 346817 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 346880 346880 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-97;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C18:99 scaffold1605 SAMTools SNP 346887 346887 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C21%2C17%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.099%2C7.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1605 SAMTools SNP 346927 346927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1605 SAMTools SNP 346974 346974 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1605 SAMTools SNP 347084 347084 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1605 SAMTools SNP 347103 347103 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 347856 347856 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1605 SAMTools SNP 347867 347867 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.57%2C0.41%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1605 SAMTools SNP 348313 348313 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C27%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 348379 348379 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.034%2C0.066%2C1%2C2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1605 SAMTools SNP 348861 348861 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1605 SAMTools SNP 348911 348911 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C23:26 scaffold1605 SAMTools SNP 348934 348934 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C35:38 scaffold1605 SAMTools SNP 349520 349520 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.019%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1605 SAMTools SNP 349549 349549 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1605 SAMTools SNP 349649 349649 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 350503 350503 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.042%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1605 SAMTools SNP 350551 350551 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0031%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1605 SAMTools SNP 351501 351501 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C45%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1605 SAMTools SNP 351587 351587 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold1605 SAMTools SNP 351650 351650 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C9%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1605 SAMTools SNP 351988 351988 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.25%2C0.25%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1605 SAMTools SNP 352873 352873 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.12%2C1%2C1%2C5.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1605 SAMTools SNP 352879 352879 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.68%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1605 SAMTools SNP 352932 352932 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.55%2C0.017%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1605 SAMTools SNP 352945 352945 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.037%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1605 SAMTools SNP 352993 352993 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C10%2C29%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1605 SAMTools SNP 353703 353703 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D59%2C135%2C14%2C37%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.73%2C1.8e-56%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1605 SAMTools SNP 355561 355561 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C218:99 scaffold1605 SAMTools SNP 355591 355591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1605 SAMTools SNP 358361 358361 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 358397 358397 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.16%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1605 SAMTools SNP 358435 358435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 358755 358755 21.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1605 SAMTools SNP 360100 360100 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C20:23 scaffold1605 SAMTools SNP 360193 360193 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold1605 SAMTools SNP 360288 360288 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C51%2C0:99 scaffold1605 SAMTools SNP 360427 360427 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C78%2C0:99 scaffold1605 SAMTools SNP 360446 360446 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold1605 SAMTools SNP 362861 362861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1605 SAMTools SNP 362896 362896 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1605 SAMTools SNP 363274 363274 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1605 SAMTools SNP 363708 363708 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1605 SAMTools SNP 363744 363744 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 363911 363911 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C97:77 scaffold1605 SAMTools SNP 363914 363914 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1605 SAMTools SNP 363986 363986 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1605 SAMTools SNP 364188 364188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 364621 364621 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 364632 364632 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 371272 371272 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C39%2C0:75 scaffold1605 SAMTools SNP 372019 372019 69.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold1605 SAMTools SNP 373619 373619 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1605 SAMTools SNP 373634 373634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 373742 373742 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold1605 SAMTools SNP 373748 373748 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1605 SAMTools SNP 374088 374088 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1605 SAMTools SNP 374130 374130 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1605 SAMTools SNP 374437 374437 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.083%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1605 SAMTools SNP 374453 374453 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1605 SAMTools SNP 374461 374461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 374497 374497 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold1605 SAMTools SNP 375225 375225 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1605 SAMTools SNP 375226 375226 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1605 SAMTools SNP 375960 375960 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 377127 377127 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.57%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1605 SAMTools SNP 377141 377141 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.035%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1605 SAMTools SNP 377159 377159 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C229:99 scaffold1605 SAMTools SNP 377503 377503 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1605 SAMTools SNP 377512 377512 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1605 SAMTools SNP 377513 377513 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1605 SAMTools SNP 377668 377668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1605 SAMTools SNP 378491 378491 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C8%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00026%2C1%2C1%2C8.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1605 SAMTools SNP 379053 379053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1605 SAMTools SNP 379663 379663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1605 SAMTools SNP 379753 379753 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C75%2C0:99 scaffold1605 SAMTools SNP 379783 379783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1605 SAMTools SNP 380024 380024 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 380392 380392 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 380398 380398 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1605 SAMTools SNP 380460 380460 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1605 SAMTools SNP 380737 380737 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 380790 380790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C180%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 380831 380831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C14%2C84%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 385165 385165 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C1%2C57%3BMQ%3D39%3BFQ%3D204%3BPV4%3D1%2C8e-07%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1605 SAMTools SNP 385768 385768 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C9%2C1%3BMQ%3D46%3BFQ%3D-45%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold1605 SAMTools SNP 405951 405951 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C6.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1605 SAMTools SNP 406134 406134 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C5.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1605 SAMTools SNP 406212 406212 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1605 SAMTools SNP 406344 406344 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1605 SAMTools SNP 407955 407955 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C6%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C2.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1605 SAMTools SNP 409049 409049 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C1%2C134%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 409133 409133 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C44%2C56%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 409774 409774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C608%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 413925 413925 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 415953 415953 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1605 SAMTools SNP 416049 416049 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 416105 416105 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.096%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1605 SAMTools SNP 417762 417762 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1605 SAMTools SNP 421589 421589 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1605 SAMTools SNP 421885 421885 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 422199 422199 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold1605 SAMTools SNP 422965 422965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.4%2C0.49%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1605 SAMTools SNP 422976 422976 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C35:38 scaffold1605 SAMTools SNP 422983 422983 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1605 SAMTools SNP 426356 426356 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1605 SAMTools SNP 426359 426359 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1605 SAMTools SNP 427074 427074 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1605 SAMTools SNP 427672 427672 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.33%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C150:99 scaffold1605 SAMTools SNP 428312 428312 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C197:99 scaffold1605 SAMTools SNP 428780 428780 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1605 SAMTools SNP 429273 429273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1605 SAMTools SNP 429701 429701 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 429703 429703 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1605 SAMTools SNP 429817 429817 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 436489 436489 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold1605 SAMTools SNP 436651 436651 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.65%2C5.8e-25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1605 SAMTools SNP 438162 438162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 438193 438193 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 440763 440763 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C38:41 scaffold1605 SAMTools SNP 440817 440817 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.53%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1605 SAMTools SNP 441372 441372 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C27%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1605 SAMTools SNP 441380 441380 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C26%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1605 SAMTools SNP 443906 443906 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.071%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1605 SAMTools SNP 444760 444760 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C195:99 scaffold1605 SAMTools SNP 444798 444798 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1605 SAMTools SNP 445009 445009 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.63%2C0.00067%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1605 SAMTools SNP 445024 445024 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1605 SAMTools SNP 445099 445099 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 445283 445283 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1605 SAMTools SNP 445284 445284 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1605 SAMTools SNP 446021 446021 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1605 SAMTools SNP 446884 446884 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 447563 447563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 447659 447659 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1605 SAMTools SNP 448144 448144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1605 SAMTools SNP 449001 449001 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C75%2C0:99 scaffold1605 SAMTools SNP 449118 449118 56.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold1605 SAMTools SNP 449563 449563 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 449658 449658 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1605 SAMTools SNP 449760 449760 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1605 SAMTools SNP 450209 450209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1605 SAMTools SNP 450260 450260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1605 SAMTools SNP 451155 451155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C26%2C18%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1605 SAMTools SNP 521548 521548 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1605 SAMTools SNP 521845 521845 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 524092 524092 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1605 SAMTools SNP 524174 524174 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 525771 525771 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C2%2C15%3BMQ%3D50%3BFQ%3D76%3BPV4%3D9.7e-05%2C3.7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1605 SAMTools SNP 526166 526166 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C190%2C0:99 scaffold1605 SAMTools SNP 526849 526849 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C66%2C4%2C54%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.18%2C2.9e-52%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1605 SAMTools SNP 526921 526921 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.24%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C232:59 scaffold1605 SAMTools SNP 530568 530568 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 530571 530571 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 533434 533434 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C48%2C0:93 scaffold1605 SAMTools SNP 533818 533818 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C11%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1605 SAMTools SNP 534794 534794 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 534833 534833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C3%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1605 SAMTools SNP 535508 535508 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C32%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 536889 536889 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C9%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 537371 537371 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0017%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C227:99 scaffold1605 SAMTools SNP 537623 537623 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1605 SAMTools SNP 537664 537664 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1605 SAMTools SNP 537680 537680 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1605 SAMTools SNP 537881 537881 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C11%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1605 SAMTools SNP 537911 537911 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.22%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1605 SAMTools SNP 537975 537975 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D4.7e-08%2C1%2C1%2C4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1605 SAMTools SNP 538286 538286 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1605 SAMTools SNP 538336 538336 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 538914 538914 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C0%2C30%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1605 SAMTools SNP 538980 538980 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1605 SAMTools SNP 539013 539013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 539489 539489 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C4%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1605 SAMTools SNP 539582 539582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.0036%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 539778 539778 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1605 SAMTools SNP 540175 540175 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C3%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.66%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1605 SAMTools SNP 540808 540808 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1605 SAMTools SNP 541124 541124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C22%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1605 SAMTools SNP 541175 541175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1605 SAMTools SNP 541253 541253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1605 SAMTools SNP 541585 541585 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C19%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1605 SAMTools SNP 541672 541672 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C78%2C0:99 scaffold1605 SAMTools SNP 541753 541753 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1605 SAMTools SNP 542455 542455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1605 SAMTools SNP 542491 542491 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold1605 SAMTools SNP 542616 542616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 542676 542676 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 542715 542715 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1605 SAMTools SNP 542718 542718 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1605 SAMTools SNP 542906 542906 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold1605 SAMTools SNP 542944 542944 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 544091 544091 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.15%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1605 SAMTools SNP 544300 544300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 547104 547104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1605 SAMTools SNP 547267 547267 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold1605 SAMTools SNP 547848 547848 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold1605 SAMTools SNP 547908 547908 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 564292 564292 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C84%2C0:99 scaffold1605 SAMTools SNP 564391 564391 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.016%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C233:86 scaffold1605 SAMTools SNP 564406 564406 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1605 SAMTools SNP 564457 564457 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 565128 565128 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C5%2C18%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.5%2C3.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1605 SAMTools SNP 565242 565242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1605 SAMTools SNP 565953 565953 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C54%2C0:99 scaffold1605 SAMTools SNP 566052 566052 48.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold1605 SAMTools SNP 566235 566235 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C30%2C0:57 scaffold1605 SAMTools SNP 566283 566283 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1605 SAMTools SNP 566334 566334 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 566644 566644 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1605 SAMTools SNP 566674 566674 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.18%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold1605 SAMTools SNP 566954 566954 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.018%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1605 SAMTools SNP 566975 566975 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 567074 567074 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.041%2C1.9e-12%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C137:72 scaffold1605 SAMTools SNP 567639 567639 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C31%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1605 SAMTools SNP 569004 569004 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 569007 569007 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 569190 569190 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C18%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold1605 SAMTools SNP 569211 569211 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C20%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1605 SAMTools SNP 569848 569848 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1605 SAMTools SNP 570175 570175 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C5%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1605 SAMTools SNP 570734 570734 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1605 SAMTools SNP 570883 570883 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C10%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0072%2C5.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1605 SAMTools SNP 571172 571172 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C27%2C0:51 scaffold1605 SAMTools SNP 571507 571507 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C90%2C0:99 scaffold1605 SAMTools SNP 571649 571649 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1605 SAMTools SNP 573874 573874 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.49%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C250:31 scaffold1605 SAMTools SNP 574349 574349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 574405 574405 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold1605 SAMTools SNP 574607 574607 197 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1605 SAMTools SNP 574979 574979 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 575353 575353 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1605 SAMTools SNP 577236 577236 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C89%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.09%2C1%2C0.18%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 577240 577240 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C14%2C60%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 577252 577252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C14%2C61%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0098%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 578239 578239 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C171%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1605 SAMTools SNP 578633 578633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C8%2C69%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 578670 578670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 579186 579186 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C85%2C22%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 579208 579208 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-08%2C1%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 579210 579210 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-05%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 579215 579215 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 583803 583803 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 583882 583882 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 584311 584311 116 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C18%2C143%2C0%2C140:21 scaffold1605 SAMTools SNP 584621 584621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1605 SAMTools SNP 584680 584680 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1605 SAMTools SNP 584696 584696 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1605 SAMTools SNP 586422 586422 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1605 SAMTools SNP 586814 586814 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1605 SAMTools SNP 588636 588636 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 589482 589482 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1605 SAMTools SNP 592429 592429 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1605 SAMTools SNP 593109 593109 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.035%2C5.7e-07%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1605 SAMTools SNP 593300 593300 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 594514 594514 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1605 SAMTools SNP 594563 594563 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 597461 597461 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold1605 SAMTools SNP 600833 600833 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C27%2C0:51 scaffold1605 SAMTools SNP 600842 600842 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold1605 SAMTools SNP 606633 606633 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1605 SAMTools SNP 606717 606717 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1605 SAMTools SNP 607041 607041 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C39:42 scaffold1605 SAMTools SNP 607119 607119 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C234:99 scaffold1605 SAMTools SNP 607547 607547 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.016%2C0.00011%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1605 SAMTools SNP 607664 607664 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C5%2C11%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.13%2C0.0013%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1605 SAMTools SNP 607706 607706 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C25%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1605 SAMTools SNP 608309 608309 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold1605 SAMTools SNP 608758 608758 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C4e-23%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1605 SAMTools SNP 609056 609056 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C42%2C0:75 scaffold1605 SAMTools SNP 609217 609217 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1605 SAMTools SNP 609404 609404 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0034%2C1.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C240:37 scaffold1605 SAMTools SNP 609874 609874 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1605 SAMTools SNP 609898 609898 82 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C119%2C110%2C119%2C0%2C110:16 scaffold1605 SAMTools SNP 609910 609910 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 609959 609959 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 609970 609970 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 610211 610211 72.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C12%2C0:21 scaffold1605 SAMTools SNP 610553 610553 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C104%2C0%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 610559 610559 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C73%2C0%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 613742 613742 53.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold1605 SAMTools SNP 617350 617350 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 618295 618295 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0078%2C0.033%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1605 SAMTools SNP 618910 618910 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C36%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 618963 618963 222 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C61%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0%2C238%2C32%2C249:99 scaffold1605 SAMTools SNP 618987 618987 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C216:99 scaffold1605 SAMTools SNP 620758 620758 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1605 SAMTools SNP 622750 622750 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1605 SAMTools SNP 622787 622787 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.28%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1605 SAMTools SNP 623042 623042 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C1%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.63%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1605 SAMTools SNP 623081 623081 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1605 SAMTools SNP 623098 623098 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 623444 623444 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.3%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1605 SAMTools SNP 623493 623493 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C45%2C0:87 scaffold1605 SAMTools SNP 623557 623557 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold1605 SAMTools SNP 623591 623591 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C23%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1.1e-05%2C7.3e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C234:33 scaffold1605 SAMTools SNP 623599 623599 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D8.4e-06%2C1.4e-05%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C244:99 scaffold1605 SAMTools SNP 624132 624132 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C220:41 scaffold1605 SAMTools SNP 625874 625874 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C42%2C0:81 scaffold1605 SAMTools SNP 625946 625946 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1605 SAMTools SNP 626379 626379 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1605 SAMTools SNP 626412 626412 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1605 SAMTools SNP 626421 626421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold1605 SAMTools SNP 626448 626448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold1605 SAMTools SNP 626623 626623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1605 SAMTools SNP 626785 626785 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1605 SAMTools SNP 626788 626788 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1605 SAMTools SNP 627110 627110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 627152 627152 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 627263 627263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1605 SAMTools SNP 628220 628220 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1605 SAMTools SNP 628398 628398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1605 SAMTools SNP 628886 628886 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C11%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1605 SAMTools SNP 628928 628928 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 629054 629054 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1605 SAMTools SNP 629446 629446 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C41%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold1605 SAMTools SNP 629681 629681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1605 SAMTools SNP 629718 629718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 629760 629760 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1605 SAMTools SNP 629793 629793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1605 SAMTools SNP 630346 630346 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1605 SAMTools SNP 630473 630473 79 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C60%2C0%2C102%2C37%2C99:99 scaffold1605 SAMTools SNP 631708 631708 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C84%2C0:99 scaffold1605 SAMTools SNP 631797 631797 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C90%2C0:99 scaffold1605 SAMTools SNP 638363 638363 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.047%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1605 SAMTools SNP 648209 648209 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1605 SAMTools SNP 648505 648505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1605 SAMTools SNP 648564 648564 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1605 SAMTools SNP 648652 648652 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1605 SAMTools SNP 648859 648859 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1605 SAMTools SNP 648867 648867 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 649346 649346 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 649550 649550 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1605 SAMTools SNP 650004 650004 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1605 SAMTools SNP 650007 650007 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1605 SAMTools SNP 650842 650842 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1605 SAMTools SNP 650972 650972 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 651244 651244 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.17%2C0.17%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C191:99 scaffold1605 SAMTools SNP 651252 651252 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 651684 651684 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 651695 651695 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.27%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1605 SAMTools SNP 652183 652183 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C77:41 scaffold1605 SAMTools SNP 652608 652608 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.35%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C235:53 scaffold1605 SAMTools SNP 652847 652847 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1605 SAMTools SNP 652907 652907 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.15%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1605 SAMTools SNP 653727 653727 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1605 SAMTools SNP 654259 654259 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C140:99 scaffold1605 SAMTools SNP 654584 654584 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C42%2C0:81 scaffold1605 SAMTools SNP 654627 654627 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C39%2C0:75 scaffold1605 SAMTools SNP 654642 654642 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1605 SAMTools SNP 655110 655110 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1605 SAMTools SNP 656134 656134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 656147 656147 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 656478 656478 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1605 SAMTools SNP 656480 656480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1605 SAMTools SNP 657003 657003 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.47%3BPV4%3D1%2C0.0023%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C35:38 scaffold1605 SAMTools SNP 661761 661761 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1605 SAMTools SNP 661821 661821 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C30%2C0:57 scaffold1605 SAMTools SNP 661969 661969 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1605 SAMTools SNP 663994 663994 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1605 SAMTools SNP 664078 664078 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold1605 SAMTools SNP 664322 664322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 664325 664325 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 665392 665392 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1605 SAMTools SNP 665452 665452 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C213:99 scaffold1605 SAMTools SNP 665491 665491 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.36%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1605 SAMTools SNP 665662 665662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 665704 665704 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.41%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C203:99 scaffold1605 SAMTools SNP 665841 665841 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 666000 666000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.25%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1605 SAMTools SNP 666175 666175 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1605 SAMTools SNP 666208 666208 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 666695 666695 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold1605 SAMTools SNP 667397 667397 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1605 SAMTools SNP 667413 667413 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1605 SAMTools SNP 667531 667531 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1605 SAMTools SNP 667606 667606 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1605 SAMTools SNP 667959 667959 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1605 SAMTools SNP 668160 668160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1605 SAMTools SNP 669123 669123 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 669531 669531 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1605 SAMTools SNP 669566 669566 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold1605 SAMTools SNP 670642 670642 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C74:77 scaffold1605 SAMTools SNP 671209 671209 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.037%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1605 SAMTools SNP 672226 672226 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold1605 SAMTools SNP 672568 672568 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C100:99 scaffold1605 SAMTools SNP 673220 673220 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 677382 677382 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1605 SAMTools SNP 677515 677515 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C24%2C6%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1605 SAMTools SNP 677769 677769 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C39%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1605 SAMTools SNP 677816 677816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1605 SAMTools SNP 678320 678320 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C75%2C0:99 scaffold1605 SAMTools SNP 678419 678419 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1605 SAMTools SNP 678761 678761 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C24%2C0:45 scaffold1605 SAMTools SNP 678830 678830 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.14%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C170:47 scaffold1605 SAMTools SNP 684224 684224 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1605 SAMTools SNP 685158 685158 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1605 SAMTools SNP 687009 687009 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1605 SAMTools SNP 687218 687218 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1605 SAMTools SNP 687329 687329 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1605 SAMTools SNP 687347 687347 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1605 SAMTools SNP 688048 688048 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 688153 688153 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold1605 SAMTools SNP 690342 690342 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1605 SAMTools SNP 690411 690411 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1605 SAMTools SNP 690545 690545 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1605 SAMTools SNP 690992 690992 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 691027 691027 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1605 SAMTools SNP 692156 692156 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1605 SAMTools SNP 692160 692160 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1605 SAMTools SNP 694510 694510 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1605 SAMTools SNP 695533 695533 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1605 SAMTools SNP 696325 696325 13.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold1605 SAMTools SNP 696435 696435 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold1605 SAMTools SNP 697432 697432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold1605 SAMTools SNP 697501 697501 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C2%2C35%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.15%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold1605 SAMTools SNP 697897 697897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 698856 698856 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1605 SAMTools SNP 700391 700391 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.074%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1605 SAMTools SNP 700479 700479 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.26%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1605 SAMTools SNP 700504 700504 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1605 SAMTools SNP 700634 700634 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1605 SAMTools SNP 700652 700652 224 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.15%2C0.076%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1605 SAMTools SNP 700981 700981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 701017 701017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 701235 701235 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1605 SAMTools SNP 702718 702718 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1605 SAMTools SNP 702721 702721 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1605 SAMTools SNP 703381 703381 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1605 SAMTools SNP 703389 703389 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1605 SAMTools SNP 704636 704636 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1605 SAMTools SNP 704885 704885 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold1605 SAMTools SNP 704895 704895 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1605 SAMTools SNP 705137 705137 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C227:99 scaffold1605 SAMTools SNP 705805 705805 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.14%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 705816 705816 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C10%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.39%2C1%2C0.14%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 706021 706021 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C8%3BMQ%3D49%3BFQ%3D136%3BPV4%3D1%2C0.11%2C0.074%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1605 SAMTools SNP 707390 707390 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1605 SAMTools SNP 707461 707461 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.1%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C24:28 scaffold1605 SAMTools SNP 708028 708028 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1605 SAMTools SNP 708360 708360 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1605 SAMTools SNP 710571 710571 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C90:93 scaffold1605 SAMTools SNP 710835 710835 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.27%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1605 SAMTools SNP 710874 710874 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold1605 SAMTools SNP 711168 711168 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.45%2C0.48%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1605 SAMTools SNP 711201 711201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 711231 711231 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1605 SAMTools SNP 711984 711984 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.1%2C0.047%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1605 SAMTools SNP 712312 712312 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1605 SAMTools SNP 712509 712509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold1605 SAMTools SNP 713943 713943 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.021%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C229:99 scaffold1605 SAMTools SNP 713949 713949 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1605 SAMTools SNP 713961 713961 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 715198 715198 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C27%2C0:51 scaffold1605 SAMTools SNP 715701 715701 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 716308 716308 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 716377 716377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1605 SAMTools SNP 724255 724255 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 724728 724728 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1605 SAMTools SNP 724995 724995 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1605 SAMTools SNP 725386 725386 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1605 SAMTools SNP 725422 725422 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1605 SAMTools SNP 725443 725443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 726896 726896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C10%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1605 SAMTools SNP 727452 727452 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C33%2C31%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1605 SAMTools SNP 727913 727913 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1605 SAMTools SNP 728096 728096 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1605 SAMTools SNP 728111 728111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1605 SAMTools SNP 728282 728282 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.13%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C112:79 scaffold1605 SAMTools SNP 728288 728288 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1605 SAMTools SNP 728458 728458 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C109:30 scaffold1605 SAMTools SNP 728479 728479 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold1605 SAMTools SNP 728515 728515 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1605 SAMTools SNP 728880 728880 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1605 SAMTools SNP 728904 728904 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C0.26%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1605 SAMTools SNP 731179 731179 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C80:57 scaffold1605 SAMTools SNP 731186 731186 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C70:67 scaffold1605 SAMTools SNP 731417 731417 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 731429 731429 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1605 SAMTools SNP 731483 731483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 731489 731489 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1605 SAMTools SNP 733117 733117 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1605 SAMTools SNP 733163 733163 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold1605 SAMTools SNP 733962 733962 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C241:99 scaffold1605 SAMTools SNP 738188 738188 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C21%2C0:39 scaffold1605 SAMTools SNP 739152 739152 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 745029 745029 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 747393 747393 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 747456 747456 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1605 SAMTools SNP 747688 747688 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00066%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C48:51 scaffold1605 SAMTools SNP 747769 747769 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1605 SAMTools SNP 747786 747786 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1605 SAMTools SNP 748466 748466 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 748642 748642 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1605 SAMTools SNP 748778 748778 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1605 SAMTools SNP 750500 750500 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C32:35 scaffold1605 SAMTools SNP 750573 750573 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 750712 750712 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 750751 750751 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 750952 750952 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1605 SAMTools SNP 751485 751485 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 751513 751513 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold1605 SAMTools SNP 751696 751696 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1605 SAMTools SNP 752107 752107 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold1605 SAMTools SNP 752408 752408 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 752646 752646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 752661 752661 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 753835 753835 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C251:99 scaffold1605 SAMTools SNP 753974 753974 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1605 SAMTools SNP 753984 753984 93.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C15%2C0:27 scaffold1605 SAMTools SNP 783929 783929 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 784741 784741 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 795006 795006 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1605 SAMTools SNP 824894 824894 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1608 SAMTools SNP 2748 2748 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 2824 2824 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1608 SAMTools SNP 3236 3236 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 4824 4824 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1608 SAMTools SNP 4878 4878 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 10005 10005 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.51%2C0.00044%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1608 SAMTools SNP 10758 10758 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 11411 11411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 11716 11716 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 11724 11724 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 11743 11743 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 11997 11997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1608 SAMTools SNP 12206 12206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C18%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 12959 12959 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.43%2C0.12%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C149:60 scaffold1608 SAMTools SNP 13805 13805 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1608 SAMTools SNP 16095 16095 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C223:65 scaffold1608 SAMTools SNP 16155 16155 109 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C113%2C192%2C0%2C183:39 scaffold1608 SAMTools SNP 16468 16468 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1608 SAMTools SNP 16552 16552 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 16978 16978 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1608 SAMTools SNP 17465 17465 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.021%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1608 SAMTools SNP 17805 17805 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C2%2C15%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.44%2C4.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1608 SAMTools SNP 18757 18757 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1608 SAMTools SNP 18778 18778 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1608 SAMTools SNP 18998 18998 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1608 SAMTools SNP 19714 19714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1608 SAMTools SNP 19715 19715 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C0.41%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1608 SAMTools SNP 20323 20323 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1608 SAMTools SNP 20720 20720 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1608 SAMTools SNP 22320 22320 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1608 SAMTools SNP 24119 24119 25.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1608 SAMTools SNP 24273 24273 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C18%2C0:33 scaffold1608 SAMTools SNP 32111 32111 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 32178 32178 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1608 SAMTools SNP 32403 32403 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1608 SAMTools SNP 32450 32450 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C35:38 scaffold1608 SAMTools SNP 32754 32754 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold1608 SAMTools SNP 32880 32880 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 32913 32913 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1608 SAMTools SNP 33154 33154 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1608 SAMTools SNP 33668 33668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1608 SAMTools SNP 34738 34738 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1608 SAMTools SNP 34772 34772 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1608 SAMTools SNP 37360 37360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1608 SAMTools SNP 38359 38359 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1608 SAMTools SNP 38443 38443 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1608 SAMTools SNP 38458 38458 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1608 SAMTools SNP 39719 39719 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 39728 39728 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1608 SAMTools SNP 45723 45723 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 48535 48535 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1608 SAMTools SNP 48584 48584 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 48765 48765 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1608 SAMTools SNP 48772 48772 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 48783 48783 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C1%2C12%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.067%2C4.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1608 SAMTools SNP 53066 53066 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1608 SAMTools SNP 53276 53276 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 53288 53288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 53571 53571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 53619 53619 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1608 SAMTools SNP 53748 53748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1608 SAMTools SNP 54053 54053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1608 SAMTools SNP 54877 54877 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.35%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold1608 SAMTools SNP 54929 54929 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.11%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1608 SAMTools SNP 54947 54947 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C5%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.027%2C5.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1608 SAMTools SNP 55129 55129 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 55180 55180 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C14%2C9%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.11%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1608 SAMTools SNP 55680 55680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C32%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1608 SAMTools SNP 56372 56372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 56399 56399 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C1%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 56420 56420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 56438 56438 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 56448 56448 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1608 SAMTools SNP 56471 56471 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1608 SAMTools SNP 57558 57558 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C255%2C0:99 scaffold1608 SAMTools SNP 57996 57996 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1608 SAMTools SNP 58444 58444 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C78%2C0:99 scaffold1608 SAMTools SNP 60131 60131 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 60146 60146 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1608 SAMTools SNP 60682 60682 29.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1608 SAMTools SNP 60740 60740 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1608 SAMTools SNP 61658 61658 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 61700 61700 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1608 SAMTools SNP 61706 61706 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 62913 62913 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1608 SAMTools SNP 66497 66497 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1608 SAMTools SNP 66503 66503 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C0.071%2C0.32%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1608 SAMTools SNP 68008 68008 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D45%3BFQ%3D12%3BPV4%3D0.4%2C0.075%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C39:42 scaffold1608 SAMTools SNP 68063 68063 92.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1608 SAMTools SNP 68317 68317 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1608 SAMTools SNP 75389 75389 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C41%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1608 SAMTools SNP 77586 77586 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 77611 77611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C0.12%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 77632 77632 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1608 SAMTools SNP 78468 78468 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 79529 79529 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 80464 80464 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1608 SAMTools SNP 81721 81721 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D533%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C417%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 82549 82549 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C494%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 82562 82562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C184%2C349%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 82691 82691 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C94%2C41%2C14%3BMQ%3D50%3BFQ%3D201%3BPV4%3D3.1e-06%2C2.3e-15%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1608 SAMTools SNP 82695 82695 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C126%2C4%2C46%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D8.7e-06%2C1%2C1%2C4.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1608 SAMTools SNP 82700 82700 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C178%2C10%2C22%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D7.2e-05%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1608 SAMTools SNP 83120 83120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C164%2C0%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 83169 83169 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1608 SAMTools SNP 84762 84762 9.97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1608 SAMTools SNP 85289 85289 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C120:99 scaffold1608 SAMTools SNP 85290 85290 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C141:99 scaffold1608 SAMTools SNP 85319 85319 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1608 SAMTools SNP 85332 85332 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1608 SAMTools SNP 85730 85730 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 86312 86312 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold1608 SAMTools SNP 86315 86315 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C173:99 scaffold1608 SAMTools SNP 86357 86357 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C186:99 scaffold1608 SAMTools SNP 86454 86454 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.4%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C247:99 scaffold1608 SAMTools SNP 86493 86493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1608 SAMTools SNP 86520 86520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C70%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1608 SAMTools SNP 89274 89274 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1608 SAMTools SNP 89294 89294 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1608 SAMTools SNP 90083 90083 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.13%2C0.026%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1608 SAMTools SNP 90124 90124 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.35%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1608 SAMTools SNP 90272 90272 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1608 SAMTools SNP 90803 90803 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C23%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.49%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1608 SAMTools SNP 91010 91010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 91073 91073 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00092%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 91369 91369 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1608 SAMTools SNP 91413 91413 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.58%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1608 SAMTools SNP 91437 91437 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1608 SAMTools SNP 92275 92275 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold1608 SAMTools SNP 92276 92276 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1608 SAMTools SNP 96137 96137 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 96757 96757 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C1%3BMQ%3D49%3BFQ%3D11.3%3BPV4%3D0.32%2C2.8e-22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1608 SAMTools SNP 108728 108728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 116843 116843 48.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1608 SAMTools SNP 121794 121794 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 122507 122507 33.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1608 SAMTools SNP 143662 143662 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7556%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3188%2C970%2C2560%2C798%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1608 SAMTools SNP 143896 143896 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5853%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C2181%2C3075%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.081%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 144086 144086 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 144457 144457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 144714 144714 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1608 SAMTools SNP 144849 144849 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1608 SAMTools SNP 150254 150254 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1608 SAMTools SNP 152374 152374 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1608 SAMTools SNP 152398 152398 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1608 SAMTools SNP 153050 153050 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.001%2C0.00025%2C1%2C7.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1608 SAMTools SNP 153053 153053 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.058%2C0.025%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1608 SAMTools SNP 153054 153054 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.4%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1608 SAMTools SNP 153094 153094 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.24%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1608 SAMTools SNP 153108 153108 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold1608 SAMTools SNP 157733 157733 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1608 SAMTools SNP 158447 158447 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1608 SAMTools SNP 158488 158488 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1608 SAMTools SNP 158898 158898 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.029%2C0.03%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1608 SAMTools SNP 158937 158937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1608 SAMTools SNP 158943 158943 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1608 SAMTools SNP 158971 158971 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.017%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1608 SAMTools SNP 158972 158972 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.021%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1608 SAMTools SNP 159157 159157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C9%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C0.11%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1608 SAMTools SNP 180859 180859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1608 SAMTools SNP 182634 182634 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1608 SAMTools SNP 185437 185437 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1608 SAMTools SNP 185456 185456 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1608 SAMTools SNP 185558 185558 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold1608 SAMTools SNP 185801 185801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1608 SAMTools SNP 185988 185988 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1608 SAMTools SNP 186000 186000 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C9%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold1608 SAMTools SNP 186006 186006 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1608 SAMTools SNP 186072 186072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1608 SAMTools SNP 186206 186206 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.0011%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C236:99 scaffold1608 SAMTools SNP 186239 186239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1608 SAMTools SNP 186245 186245 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C193:99 scaffold1608 SAMTools SNP 186826 186826 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C210:70 scaffold1608 SAMTools SNP 186828 186828 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C67:70 scaffold1608 SAMTools SNP 187199 187199 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 187220 187220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1608 SAMTools SNP 187420 187420 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.083%2C6.2e-07%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C176:43 scaffold1608 SAMTools SNP 187456 187456 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1608 SAMTools SNP 187931 187931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1608 SAMTools SNP 187932 187932 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1608 SAMTools SNP 188270 188270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1608 SAMTools SNP 188333 188333 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C8%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.17%2C5.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1608 SAMTools SNP 188969 188969 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C154%2C0:99 scaffold1608 SAMTools SNP 198441 198441 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1271%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C175%2C1071%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 204415 204415 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1608 SAMTools SNP 204445 204445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1608 SAMTools SNP 206667 206667 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.091%2C1.3e-13%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C234:73 scaffold1608 SAMTools SNP 215628 215628 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1608 SAMTools SNP 216784 216784 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1608 SAMTools SNP 217395 217395 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1608 SAMTools SNP 217404 217404 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1608 SAMTools SNP 248723 248723 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C204:52 scaffold1608 SAMTools SNP 248972 248972 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C24%2C0:45 scaffold1608 SAMTools SNP 249020 249020 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C97:99 scaffold1608 SAMTools SNP 255247 255247 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1608 SAMTools SNP 255655 255655 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1609 SAMTools SNP 11506 11506 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 11508 11508 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 105572 105572 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 105594 105594 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 115928 115928 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 116120 116120 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1609 SAMTools SNP 116176 116176 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 116203 116203 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 116215 116215 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 116218 116218 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 140375 140375 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1609 SAMTools SNP 194921 194921 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 218115 218115 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1609 SAMTools SNP 219340 219340 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1609 SAMTools SNP 219352 219352 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C30%2C0:57 scaffold1609 SAMTools SNP 220202 220202 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1609 SAMTools SNP 220684 220684 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1609 SAMTools SNP 220722 220722 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1609 SAMTools SNP 220726 220726 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1609 SAMTools SNP 221600 221600 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1609 SAMTools SNP 221678 221678 22.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1609 SAMTools SNP 222161 222161 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1609 SAMTools SNP 222590 222590 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1609 SAMTools SNP 222620 222620 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C29:32 scaffold1609 SAMTools SNP 222722 222722 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1609 SAMTools SNP 222776 222776 31.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1609 SAMTools SNP 223197 223197 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1609 SAMTools SNP 230130 230130 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1609 SAMTools SNP 239890 239890 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1609 SAMTools SNP 240511 240511 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1609 SAMTools SNP 241544 241544 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1609 SAMTools SNP 241890 241890 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1609 SAMTools SNP 242481 242481 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1609 SAMTools SNP 243480 243480 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 244392 244392 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C5%3BMQ%3D35%3BFQ%3D50%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C77:80 scaffold1609 SAMTools SNP 244624 244624 83 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D21%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C69%2C0%2C83%2C22%2C80:99 scaffold1609 SAMTools SNP 244659 244659 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D16%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C63%2C0:99 scaffold1609 SAMTools SNP 247354 247354 25.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1609 SAMTools SNP 248927 248927 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C143:28 scaffold1609 SAMTools SNP 248938 248938 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.033%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C143:28 scaffold1609 SAMTools SNP 253102 253102 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.61%2C0.085%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1609 SAMTools SNP 258949 258949 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0071%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1609 SAMTools SNP 260132 260132 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1609 SAMTools SNP 260204 260204 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C24%2C22%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1609 SAMTools SNP 260582 260582 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1609 SAMTools SNP 260649 260649 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1609 SAMTools SNP 261188 261188 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1609 SAMTools SNP 261191 261191 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1609 SAMTools SNP 263375 263375 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1609 SAMTools SNP 267391 267391 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1609 SAMTools SNP 269831 269831 12.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C5%2C0:8 scaffold1609 SAMTools SNP 269921 269921 8.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.0012%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C5%2C0:7 scaffold1609 SAMTools SNP 270341 270341 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold161 SAMTools SNP 548 548 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 14320 14320 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold161 SAMTools SNP 16853 16853 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold161 SAMTools SNP 17438 17438 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold161 SAMTools SNP 17463 17463 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C77:80 scaffold161 SAMTools SNP 17708 17708 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold161 SAMTools SNP 17723 17723 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.022%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold161 SAMTools SNP 17732 17732 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold161 SAMTools SNP 17898 17898 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 17946 17946 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 17973 17973 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold161 SAMTools SNP 18785 18785 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C241:99 scaffold161 SAMTools SNP 18921 18921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold161 SAMTools SNP 18966 18966 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C30%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 18972 18972 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C39%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 20267 20267 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C247:99 scaffold161 SAMTools SNP 21544 21544 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C33%2C0:63 scaffold161 SAMTools SNP 21589 21589 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C36%2C0:69 scaffold161 SAMTools SNP 22866 22866 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 23183 23183 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold161 SAMTools SNP 23402 23402 46.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold161 SAMTools SNP 26191 26191 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold161 SAMTools SNP 27279 27279 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.31%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold161 SAMTools SNP 27342 27342 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold161 SAMTools SNP 28232 28232 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold161 SAMTools SNP 28987 28987 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold161 SAMTools SNP 29073 29073 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C9.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C206:66 scaffold161 SAMTools SNP 29736 29736 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold161 SAMTools SNP 29813 29813 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold161 SAMTools SNP 30094 30094 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold161 SAMTools SNP 30112 30112 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold161 SAMTools SNP 30186 30186 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 30442 30442 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.015%2C8.2e-05%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold161 SAMTools SNP 31291 31291 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold161 SAMTools SNP 31362 31362 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold161 SAMTools SNP 31745 31745 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold161 SAMTools SNP 31751 31751 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold161 SAMTools SNP 34797 34797 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 35136 35136 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold161 SAMTools SNP 35163 35163 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold161 SAMTools SNP 35545 35545 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold161 SAMTools SNP 35922 35922 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C216:99 scaffold161 SAMTools SNP 36099 36099 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold161 SAMTools SNP 36453 36453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold161 SAMTools SNP 36579 36579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold161 SAMTools SNP 37359 37359 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold161 SAMTools SNP 38133 38133 88 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C21%2C117%2C0%2C114:16 scaffold161 SAMTools SNP 38142 38142 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold161 SAMTools SNP 38220 38220 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold161 SAMTools SNP 38618 38618 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold161 SAMTools SNP 38647 38647 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 38725 38725 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C234:99 scaffold161 SAMTools SNP 38764 38764 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold161 SAMTools SNP 39439 39439 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold161 SAMTools SNP 39454 39454 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold161 SAMTools SNP 39499 39499 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold161 SAMTools SNP 39998 39998 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.29%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C212:99 scaffold161 SAMTools SNP 40082 40082 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.5e-08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C69:47 scaffold161 SAMTools SNP 41191 41191 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold161 SAMTools SNP 41210 41210 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold161 SAMTools SNP 41251 41251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold161 SAMTools SNP 41642 41642 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold161 SAMTools SNP 41705 41705 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold161 SAMTools SNP 41964 41964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold161 SAMTools SNP 46174 46174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold161 SAMTools SNP 47074 47074 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold161 SAMTools SNP 47144 47144 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold161 SAMTools SNP 47589 47589 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 47601 47601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 52844 52844 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold161 SAMTools SNP 54464 54464 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 59237 59237 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C33%2C16%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C1.2e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold161 SAMTools SNP 71935 71935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold161 SAMTools SNP 72377 72377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold161 SAMTools SNP 72482 72482 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.29%2C0.15%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold161 SAMTools SNP 72989 72989 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold161 SAMTools SNP 73025 73025 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold161 SAMTools SNP 73082 73082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold161 SAMTools SNP 75906 75906 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold161 SAMTools SNP 77565 77565 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold161 SAMTools SNP 78040 78040 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C229:48 scaffold161 SAMTools SNP 78478 78478 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.64%2C4.2e-18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold161 SAMTools SNP 103932 103932 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 103933 103933 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold161 SAMTools SNP 105158 105158 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D44%3BFQ%3D75%3BPV4%3D1%2C0.17%2C0.16%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C102:99 scaffold161 SAMTools SNP 105188 105188 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.41%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold161 SAMTools SNP 107697 107697 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 107718 107718 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C19%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 107900 107900 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 107942 107942 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C59%2C0%2C16%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold161 SAMTools SNP 108473 108473 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold161 SAMTools SNP 108852 108852 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C4%2C18%3BMQ%3D48%3BFQ%3D116%3BPV4%3D0.42%2C1.6e-08%2C0.031%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold161 SAMTools SNP 114153 114153 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D21%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C141%2C0:99 scaffold161 SAMTools SNP 114248 114248 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0018%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C24:27 scaffold161 SAMTools SNP 114259 114259 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold161 SAMTools SNP 115736 115736 34.8 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold161 SAMTools SNP 115778 115778 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1262%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C567%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C255%2C0:99 scaffold161 SAMTools SNP 116926 116926 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7964%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C8%2C28%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.56%2C4.1e-08%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C49:52 scaffold161 SAMTools SNP 117184 117184 6.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7998%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C60%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C4.3e-19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C60%2C0:51 scaffold161 SAMTools SNP 118842 118842 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4691%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1.2e-06%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C13%2C0:23 scaffold161 SAMTools SNP 120980 120980 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2043%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold161 SAMTools SNP 121315 121315 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold161 SAMTools SNP 121993 121993 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0018%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C24:27 scaffold161 SAMTools SNP 122114 122114 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6381%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C28%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C3.3e-13%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C87:90 scaffold161 SAMTools SNP 122134 122134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6659%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C5569%2C1052%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.58%2C4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 122633 122633 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5965%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C1%2C5%2C113%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D1e-09%2C2.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C90%2C0:99 scaffold161 SAMTools SNP 122666 122666 96.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7218%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C34%2C6%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.42%2C7.7e-09%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C6%2C0:10 scaffold161 SAMTools SNP 122744 122744 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3666%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C73%3BMQ%3D50%3BFQ%3D-203%3BPV4%3D1%2C8.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C176%2C0:99 scaffold161 SAMTools SNP 122869 122869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4197%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4061%2C70%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 124485 124485 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1268%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C764%2C242%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 124529 124529 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1414%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C54%2C0:99 scaffold161 SAMTools SNP 124638 124638 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D750%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C339%2C189%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 124779 124779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D898%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C484%2C244%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.34%2C5.2e-13%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 124809 124809 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D943%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C42:45 scaffold161 SAMTools SNP 125136 125136 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1984%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C78%2C0:99 scaffold161 SAMTools SNP 125962 125962 156 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D1946%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C520%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0%2C162%2C255%2C169:99 scaffold161 SAMTools SNP 126816 126816 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C90%2C0:99 scaffold161 SAMTools SNP 127042 127042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C127%2C41%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold161 SAMTools SNP 128101 128101 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7673%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D70.8%3BPV4%3D1%2C5.1e-12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C104:99 scaffold161 SAMTools SNP 131051 131051 4.12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C39%3BMQ%3D3%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C123%2C0:39 scaffold161 SAMTools SNP 147654 147654 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold161 SAMTools SNP 148174 148174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold161 SAMTools SNP 148255 148255 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C66%2C0:99 scaffold161 SAMTools SNP 184372 184372 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C11%2C0%3BMQ%3D41%3BFQ%3D-41%3BPV4%3D0.00073%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C14%2C0:25 scaffold161 SAMTools SNP 191874 191874 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold161 SAMTools SNP 193845 193845 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.37%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C217:99 scaffold161 SAMTools SNP 196973 196973 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold161 SAMTools SNP 197048 197048 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold161 SAMTools SNP 197908 197908 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold161 SAMTools SNP 198120 198120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold161 SAMTools SNP 202061 202061 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold161 SAMTools SNP 202491 202491 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1610 SAMTools SNP 19081 19081 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C235:54 scaffold1610 SAMTools SNP 19195 19195 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C14%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C6.9e-24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C124:99 scaffold1610 SAMTools SNP 19524 19524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 21846 21846 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 30174 30174 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 34907 34907 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1610 SAMTools SNP 37816 37816 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1610 SAMTools SNP 37840 37840 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold1610 SAMTools SNP 37849 37849 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold1610 SAMTools SNP 45711 45711 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C30%2C0:57 scaffold1610 SAMTools SNP 45794 45794 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1610 SAMTools SNP 45801 45801 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.31%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1610 SAMTools SNP 46430 46430 57.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold1610 SAMTools SNP 47147 47147 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1610 SAMTools SNP 47202 47202 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1610 SAMTools SNP 47903 47903 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.42%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1610 SAMTools SNP 51708 51708 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C41%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1.8e-18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 52824 52824 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C44%2C1%2C8%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.43%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1610 SAMTools SNP 53543 53543 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C49%2C7%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1610 SAMTools SNP 56523 56523 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1610 SAMTools SNP 56565 56565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 57328 57328 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1610 SAMTools SNP 57330 57330 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1610 SAMTools SNP 58365 58365 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1610 SAMTools SNP 59368 59368 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1610 SAMTools SNP 59369 59369 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1610 SAMTools SNP 59699 59699 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1610 SAMTools SNP 59864 59864 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1610 SAMTools SNP 59943 59943 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1610 SAMTools SNP 59973 59973 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1610 SAMTools SNP 76828 76828 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1610 SAMTools SNP 88297 88297 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1610 SAMTools SNP 93618 93618 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1610 SAMTools SNP 93640 93640 74.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1610 SAMTools SNP 93650 93650 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold1610 SAMTools SNP 93775 93775 73.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold1610 SAMTools SNP 93814 93814 27.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1610 SAMTools SNP 110345 110345 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 110750 110750 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1610 SAMTools SNP 112080 112080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1610 SAMTools SNP 112488 112488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C8%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1610 SAMTools SNP 124190 124190 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 127765 127765 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1610 SAMTools SNP 128790 128790 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1610 SAMTools SNP 129079 129079 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1610 SAMTools SNP 129114 129114 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.43%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1610 SAMTools SNP 129125 129125 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C20%2C0%2C15%3BMQ%3D50%3BFQ%3D108%3BPV4%3D6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1610 SAMTools SNP 129237 129237 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C3%2C35%3BMQ%3D50%3BFQ%3D135%3BPV4%3D8.4e-19%2C1.4e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1610 SAMTools SNP 129354 129354 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C15%2C51%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.5e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1610 SAMTools SNP 133377 133377 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C5.9e-37%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1610 SAMTools SNP 133476 133476 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.13%2C3.4e-27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1610 SAMTools SNP 133804 133804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 133885 133885 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1610 SAMTools SNP 134050 134050 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C32%2C34%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.7e-76%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 134254 134254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1610 SAMTools SNP 134275 134275 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 137982 137982 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold1610 SAMTools SNP 165567 165567 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C42%2C0:81 scaffold1610 SAMTools SNP 165918 165918 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C238%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6.2e-134%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C255%2C0:99 scaffold1610 SAMTools SNP 169665 169665 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C92%2C0%2C43%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.034%2C0.00093%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1610 SAMTools SNP 169725 169725 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0008%2C0.015%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C238:99 scaffold1610 SAMTools SNP 170530 170530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.36%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1610 SAMTools SNP 170558 170558 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C26:29 scaffold1610 SAMTools SNP 171104 171104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1610 SAMTools SNP 171407 171407 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1610 SAMTools SNP 171540 171540 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 172140 172140 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1610 SAMTools SNP 172147 172147 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1610 SAMTools SNP 174689 174689 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D0.31%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold1610 SAMTools SNP 174701 174701 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.23%2C0.0046%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1610 SAMTools SNP 174745 174745 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 174936 174936 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1610 SAMTools SNP 174942 174942 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 174948 174948 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1610 SAMTools SNP 174957 174957 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.015%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C221:99 scaffold1610 SAMTools SNP 174963 174963 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.15%2C0.27%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1610 SAMTools SNP 175265 175265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 178007 178007 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1610 SAMTools SNP 178061 178061 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1610 SAMTools SNP 178094 178094 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.16%2C5.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1610 SAMTools SNP 178111 178111 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1610 SAMTools SNP 178124 178124 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1610 SAMTools SNP 178542 178542 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1610 SAMTools SNP 178567 178567 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1610 SAMTools SNP 180131 180131 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1610 SAMTools SNP 181706 181706 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C141:99 scaffold1610 SAMTools SNP 182368 182368 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C234:99 scaffold1610 SAMTools SNP 182404 182404 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1610 SAMTools SNP 182479 182479 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 182491 182491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 182913 182913 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0031%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1610 SAMTools SNP 182928 182928 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1610 SAMTools SNP 182961 182961 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 183446 183446 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1610 SAMTools SNP 184374 184374 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1610 SAMTools SNP 187656 187656 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C121:70 scaffold1610 SAMTools SNP 187731 187731 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.48%2C6.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C213:99 scaffold1610 SAMTools SNP 188116 188116 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1610 SAMTools SNP 188135 188135 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1610 SAMTools SNP 189242 189242 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1610 SAMTools SNP 189301 189301 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1610 SAMTools SNP 189325 189325 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1610 SAMTools SNP 189421 189421 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C10%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 191183 191183 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1610 SAMTools SNP 195265 195265 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C71%2C8%2C10%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.27%2C1%2C1%2C3.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1610 SAMTools SNP 195298 195298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C25%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1610 SAMTools SNP 197278 197278 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 197444 197444 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C40%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D1%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C145%2C0:99 scaffold1610 SAMTools SNP 197512 197512 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.27%2C5.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1610 SAMTools SNP 216710 216710 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1610 SAMTools SNP 216721 216721 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 217217 217217 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1610 SAMTools SNP 218379 218379 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 218442 218442 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 218606 218606 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1610 SAMTools SNP 218647 218647 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.47%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C36:39 scaffold1610 SAMTools SNP 222245 222245 39.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1610 SAMTools SNP 222275 222275 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold1610 SAMTools SNP 222588 222588 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1610 SAMTools SNP 223165 223165 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1610 SAMTools SNP 223672 223672 55.8 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C38%2C32%2C86%2C0%2C83:10 scaffold1610 SAMTools SNP 224046 224046 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1610 SAMTools SNP 224532 224532 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1610 SAMTools SNP 224575 224575 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1610 SAMTools SNP 224607 224607 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1610 SAMTools SNP 225110 225110 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1610 SAMTools SNP 225243 225243 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1610 SAMTools SNP 226495 226495 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1610 SAMTools SNP 226560 226560 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C1%3BMQ%3D46%3BFQ%3D105%3BPV4%3D0.61%2C1%2C0.0042%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1610 SAMTools SNP 227994 227994 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1610 SAMTools SNP 228583 228583 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1610 SAMTools SNP 228874 228874 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1610 SAMTools SNP 233265 233265 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D33.4%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C69:63 scaffold1610 SAMTools SNP 233525 233525 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1610 SAMTools SNP 233810 233810 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C8.8e-07%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C242:34 scaffold1610 SAMTools SNP 234075 234075 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C113:99 scaffold1610 SAMTools SNP 234124 234124 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C75:43 scaffold1610 SAMTools SNP 234724 234724 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1610 SAMTools SNP 236783 236783 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C158:99 scaffold1610 SAMTools SNP 238043 238043 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1610 SAMTools SNP 241175 241175 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 242602 242602 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1610 SAMTools SNP 242614 242614 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1610 SAMTools SNP 242840 242840 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1610 SAMTools SNP 243027 243027 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 244653 244653 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C195:99 scaffold1610 SAMTools SNP 245274 245274 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1610 SAMTools SNP 245449 245449 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C96:99 scaffold1610 SAMTools SNP 245804 245804 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1610 SAMTools SNP 252545 252545 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 252549 252549 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 253272 253272 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1610 SAMTools SNP 254552 254552 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1610 SAMTools SNP 255417 255417 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C24%2C0:45 scaffold1610 SAMTools SNP 255484 255484 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C134:47 scaffold1610 SAMTools SNP 257447 257447 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1610 SAMTools SNP 257495 257495 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00033%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C217:49 scaffold1610 SAMTools SNP 258213 258213 46.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold1610 SAMTools SNP 258417 258417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 258422 258422 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C21%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.49%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1610 SAMTools SNP 261260 261260 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 265365 265365 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1610 SAMTools SNP 265404 265404 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.5e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C74:41 scaffold1610 SAMTools SNP 274062 274062 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 274445 274445 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 274484 274484 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1610 SAMTools SNP 274511 274511 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1610 SAMTools SNP 277307 277307 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1610 SAMTools SNP 277574 277574 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1610 SAMTools SNP 277581 277581 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1610 SAMTools SNP 280162 280162 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 280750 280750 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 280824 280824 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 280863 280863 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 286091 286091 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1610 SAMTools SNP 286157 286157 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C15%2C6%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.052%2C1e-18%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1610 SAMTools SNP 286719 286719 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1610 SAMTools SNP 290824 290824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1610 SAMTools SNP 292453 292453 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.078%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold1610 SAMTools SNP 293054 293054 164 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0023%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1610 SAMTools SNP 293063 293063 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.078%2C0.11%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1610 SAMTools SNP 293683 293683 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1610 SAMTools SNP 299612 299612 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1610 SAMTools SNP 300523 300523 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold1610 SAMTools SNP 301079 301079 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1610 SAMTools SNP 301992 301992 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1610 SAMTools SNP 307271 307271 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C9%2C80%3BMQ%3D49%3BFQ%3D225%3BPV4%3D2.9e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 308123 308123 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C196%2C15%2C57%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.87%2C0.049%2C1%2C4.8e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 309410 309410 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.48%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 309914 309914 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C5%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1610 SAMTools SNP 310339 310339 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.079%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1610 SAMTools SNP 310432 310432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1610 SAMTools SNP 310852 310852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C17%2C17%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold1610 SAMTools SNP 311199 311199 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C29%2C81%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C2.2e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 311674 311674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00085%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 312374 312374 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C162%2C32%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 312970 312970 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C39%2C5%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.053%2C1%2C0.12%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 312988 312988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C45%2C10%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.45%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 313018 313018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C15%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C1%2C0.5%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 314032 314032 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold1610 SAMTools SNP 315011 315011 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C10%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.55%2C5.7e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1610 SAMTools SNP 315026 315026 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C11%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.75%2C9.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1610 SAMTools SNP 316157 316157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C36%2C55%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1.1e-26%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 316169 316169 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C19%2C5%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-10%2C1%2C0.29%2C6.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 316178 316178 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.095%2C4.2e-05%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1610 SAMTools SNP 316220 316220 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C25%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 316238 316238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C40%2C35%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 316738 316738 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C68%2C0%2C33%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1610 SAMTools SNP 316846 316846 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1610 SAMTools SNP 316873 316873 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C3%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.11%2C0.37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1610 SAMTools SNP 317484 317484 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C19%2C4%2C8%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00037%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1610 SAMTools SNP 317497 317497 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C20%2C7%2C11%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.0001%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1610 SAMTools SNP 319669 319669 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C69%2C11%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D4.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1610 SAMTools SNP 319759 319759 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C45%2C21%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1610 SAMTools SNP 319780 319780 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 319978 319978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1610 SAMTools SNP 320304 320304 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C43%2C12%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 320346 320346 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D27%2C26%2C3%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.079%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1610 SAMTools SNP 320758 320758 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C0%2C26%3BMQ%3D50%3BFQ%3D196%3BPV4%3D2.6e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1610 SAMTools SNP 320776 320776 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C0%2C25%3BMQ%3D50%3BFQ%3D188%3BPV4%3D2.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1610 SAMTools SNP 320827 320827 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1610 SAMTools SNP 321151 321151 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C36%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1610 SAMTools SNP 321247 321247 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold1610 SAMTools SNP 321277 321277 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1610 SAMTools SNP 321816 321816 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1610 SAMTools SNP 321854 321854 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C8%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1610 SAMTools SNP 321890 321890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1610 SAMTools SNP 321947 321947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C37%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1610 SAMTools SNP 322145 322145 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C41%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1610 SAMTools SNP 322223 322223 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1610 SAMTools SNP 322677 322677 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.25%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C246:99 scaffold1610 SAMTools SNP 322704 322704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00066%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 322707 322707 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 322752 322752 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C0.34%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 323132 323132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.091%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 323138 323138 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C11%2C20%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.043%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1610 SAMTools SNP 323189 323189 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C37%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1610 SAMTools SNP 323285 323285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C261%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 323531 323531 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C221%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 323633 323633 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1610 SAMTools SNP 324439 324439 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C26%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 324460 324460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C15%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1610 SAMTools SNP 324604 324604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C22%2C132%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.27%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 324631 324631 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C75%2C15%2C68%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.53%2C4.5e-78%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1610 SAMTools SNP 324721 324721 59.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold1610 SAMTools SNP 326167 326167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 326350 326350 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold1610 SAMTools SNP 326482 326482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C95%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1610 SAMTools SNP 326973 326973 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1610 SAMTools SNP 327025 327025 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1610 SAMTools SNP 327030 327030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1610 SAMTools SNP 327642 327642 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1610 SAMTools SNP 328309 328309 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C15%2C39%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1610 SAMTools SNP 328414 328414 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C127%2C0%2C46%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1610 SAMTools SNP 329602 329602 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C9%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 330437 330437 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C29%2C28%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 330488 330488 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C93%2C3%2C20%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.41%2C4.5e-12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1610 SAMTools SNP 330930 330930 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 330965 330965 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 332562 332562 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold1610 SAMTools SNP 334191 334191 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1610 SAMTools SNP 358008 358008 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C27%2C0:51 scaffold1610 SAMTools SNP 358873 358873 86.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold1610 SAMTools SNP 358936 358936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1610 SAMTools SNP 358940 358940 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1610 SAMTools SNP 366249 366249 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1610 SAMTools SNP 366414 366414 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 366585 366585 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1610 SAMTools SNP 366811 366811 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1610 SAMTools SNP 366923 366923 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0:56 scaffold1610 SAMTools SNP 367300 367300 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C33%2C0:63 scaffold1610 SAMTools SNP 367608 367608 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold1610 SAMTools SNP 367959 367959 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C9%2C25%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.4%2C2.6e-63%2C0.2%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1610 SAMTools SNP 372126 372126 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1610 SAMTools SNP 382991 382991 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1610 SAMTools SNP 383650 383650 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1610 SAMTools SNP 406462 406462 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1610 SAMTools SNP 409363 409363 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1610 SAMTools SNP 420324 420324 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1610 SAMTools SNP 420336 420336 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold1610 SAMTools SNP 420600 420600 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 421302 421302 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1610 SAMTools SNP 421880 421880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1610 SAMTools SNP 421907 421907 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1610 SAMTools SNP 422224 422224 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1610 SAMTools SNP 422271 422271 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1610 SAMTools SNP 422358 422358 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1610 SAMTools SNP 422391 422391 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1610 SAMTools SNP 422976 422976 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1610 SAMTools SNP 423932 423932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1610 SAMTools SNP 423940 423940 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1610 SAMTools SNP 423943 423943 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold1610 SAMTools SNP 424495 424495 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C232:99 scaffold1610 SAMTools SNP 424509 424509 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold1610 SAMTools SNP 424743 424743 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.021%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1610 SAMTools SNP 424794 424794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1610 SAMTools SNP 428141 428141 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1610 SAMTools SNP 432321 432321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1610 SAMTools SNP 434616 434616 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C48%2C0:93 scaffold1610 SAMTools SNP 434680 434680 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1610 SAMTools SNP 434888 434888 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1610 SAMTools SNP 434900 434900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1610 SAMTools SNP 435283 435283 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1610 SAMTools SNP 435487 435487 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1610 SAMTools SNP 435737 435737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C57%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D0.034%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold1610 SAMTools SNP 435829 435829 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1610 SAMTools SNP 465248 465248 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold1611 SAMTools SNP 1710 1710 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1611 SAMTools SNP 21655 21655 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1611 SAMTools SNP 22279 22279 45.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1611 SAMTools SNP 24611 24611 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1611 SAMTools SNP 27179 27179 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1611 SAMTools SNP 27216 27216 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1611 SAMTools SNP 27233 27233 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1611 SAMTools SNP 27611 27611 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1611 SAMTools SNP 28654 28654 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1611 SAMTools SNP 28730 28730 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1611 SAMTools SNP 29070 29070 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1611 SAMTools SNP 29526 29526 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1611 SAMTools SNP 30384 30384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1611 SAMTools SNP 30426 30426 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1611 SAMTools SNP 30452 30452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1611 SAMTools SNP 30904 30904 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1611 SAMTools SNP 30919 30919 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1611 SAMTools SNP 32728 32728 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1611 SAMTools SNP 32748 32748 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1611 SAMTools SNP 33269 33269 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1611 SAMTools SNP 33904 33904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1611 SAMTools SNP 33960 33960 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 39301 39301 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C9.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1611 SAMTools SNP 50100 50100 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1611 SAMTools SNP 50125 50125 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1611 SAMTools SNP 50221 50221 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1611 SAMTools SNP 54523 54523 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 55256 55256 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 55420 55420 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1611 SAMTools SNP 63871 63871 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1611 SAMTools SNP 64064 64064 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 64069 64069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 64938 64938 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1611 SAMTools SNP 64952 64952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1611 SAMTools SNP 65337 65337 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C206:99 scaffold1611 SAMTools SNP 65435 65435 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C13%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.37%2C3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1611 SAMTools SNP 65705 65705 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C21%2C0:39 scaffold1611 SAMTools SNP 65716 65716 37.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1611 SAMTools SNP 66295 66295 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold1611 SAMTools SNP 66302 66302 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1611 SAMTools SNP 66313 66313 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1611 SAMTools SNP 67254 67254 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1611 SAMTools SNP 68351 68351 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 68972 68972 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1611 SAMTools SNP 69591 69591 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1611 SAMTools SNP 70548 70548 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 70619 70619 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1611 SAMTools SNP 72928 72928 54.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1611 SAMTools SNP 140955 140955 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1611 SAMTools SNP 142140 142140 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C88:34 scaffold1611 SAMTools SNP 143744 143744 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1611 SAMTools SNP 225208 225208 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1611 SAMTools SNP 225806 225806 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 225834 225834 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1611 SAMTools SNP 229230 229230 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1611 SAMTools SNP 230247 230247 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1611 SAMTools SNP 230325 230325 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C226:71 scaffold1611 SAMTools SNP 230352 230352 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1611 SAMTools SNP 230830 230830 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1611 SAMTools SNP 231292 231292 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold1611 SAMTools SNP 231313 231313 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C149:99 scaffold1611 SAMTools SNP 231795 231795 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.067%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold1611 SAMTools SNP 233253 233253 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1611 SAMTools SNP 233295 233295 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1611 SAMTools SNP 233329 233329 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1611 SAMTools SNP 238944 238944 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1611 SAMTools SNP 238972 238972 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1611 SAMTools SNP 239361 239361 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1611 SAMTools SNP 247034 247034 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold1611 SAMTools SNP 247081 247081 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1611 SAMTools SNP 257681 257681 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C78:81 scaffold1611 SAMTools SNP 257684 257684 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold1611 SAMTools SNP 257701 257701 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1611 SAMTools SNP 258716 258716 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 259165 259165 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 259432 259432 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 261518 261518 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1611 SAMTools SNP 263636 263636 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C177:82 scaffold1611 SAMTools SNP 264133 264133 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.35%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1611 SAMTools SNP 264392 264392 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1611 SAMTools SNP 264412 264412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1611 SAMTools SNP 265068 265068 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1611 SAMTools SNP 265227 265227 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1611 SAMTools SNP 265241 265241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.2%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1611 SAMTools SNP 265308 265308 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1611 SAMTools SNP 265761 265761 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1611 SAMTools SNP 265769 265769 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1611 SAMTools SNP 265789 265789 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1611 SAMTools SNP 266187 266187 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1611 SAMTools SNP 266671 266671 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1611 SAMTools SNP 267323 267323 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1611 SAMTools SNP 268808 268808 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1611 SAMTools SNP 269365 269365 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1611 SAMTools SNP 271393 271393 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1611 SAMTools SNP 271395 271395 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1611 SAMTools SNP 271841 271841 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C244:99 scaffold1611 SAMTools SNP 271879 271879 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1611 SAMTools SNP 272392 272392 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.41%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1611 SAMTools SNP 272400 272400 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1611 SAMTools SNP 272493 272493 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C119:99 scaffold1611 SAMTools SNP 272622 272622 30.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold1611 SAMTools SNP 273320 273320 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C13%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.35%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1611 SAMTools SNP 273803 273803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1611 SAMTools SNP 274196 274196 77.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1611 SAMTools SNP 274460 274460 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C51%2C0:79 scaffold1611 SAMTools SNP 274613 274613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C22%2C7%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold1611 SAMTools SNP 275099 275099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1611 SAMTools SNP 277506 277506 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.037%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1611 SAMTools SNP 280414 280414 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1611 SAMTools SNP 280941 280941 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1611 SAMTools SNP 280942 280942 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1611 SAMTools SNP 281887 281887 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.012%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C166:33 scaffold1611 SAMTools SNP 281894 281894 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C2.6e-06%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C93:67 scaffold1611 SAMTools SNP 284938 284938 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1616 SAMTools SNP 38657 38657 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 68459 68459 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C202%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1616 SAMTools SNP 68604 68604 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold1616 SAMTools SNP 68953 68953 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C92%2C0%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1616 SAMTools SNP 73985 73985 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1616 SAMTools SNP 89060 89060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 92872 92872 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1616 SAMTools SNP 94901 94901 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1616 SAMTools SNP 95025 95025 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1616 SAMTools SNP 95266 95266 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1616 SAMTools SNP 95279 95279 220 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2%2C230%2C0%2C227:87 scaffold1616 SAMTools SNP 97704 97704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1616 SAMTools SNP 97737 97737 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C55:58 scaffold1616 SAMTools SNP 98731 98731 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1616 SAMTools SNP 98880 98880 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1616 SAMTools SNP 98935 98935 51.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold1616 SAMTools SNP 99074 99074 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1616 SAMTools SNP 99298 99298 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1616 SAMTools SNP 99313 99313 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1616 SAMTools SNP 99371 99371 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1616 SAMTools SNP 99388 99388 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1616 SAMTools SNP 100274 100274 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 101714 101714 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 101877 101877 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 101883 101883 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 102706 102706 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1616 SAMTools SNP 102722 102722 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1616 SAMTools SNP 102733 102733 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 103178 103178 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.26%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1616 SAMTools SNP 103193 103193 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1616 SAMTools SNP 103249 103249 52.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1616 SAMTools SNP 103323 103323 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C48%2C0:93 scaffold1616 SAMTools SNP 103650 103650 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1616 SAMTools SNP 103651 103651 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 103657 103657 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 103736 103736 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1616 SAMTools SNP 162727 162727 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1616 SAMTools SNP 197803 197803 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1616 SAMTools SNP 207633 207633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1616 SAMTools SNP 209547 209547 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1619 SAMTools SNP 63923 63923 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1619 SAMTools SNP 63958 63958 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1619 SAMTools SNP 64245 64245 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1619 SAMTools SNP 77008 77008 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1619 SAMTools SNP 77698 77698 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1619 SAMTools SNP 77708 77708 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.01%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C88:61 scaffold1619 SAMTools SNP 78162 78162 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold1619 SAMTools SNP 81105 81105 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 87496 87496 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 90033 90033 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 91091 91091 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold1619 SAMTools SNP 92240 92240 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 92272 92272 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1619 SAMTools SNP 92859 92859 54.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1619 SAMTools SNP 93220 93220 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1619 SAMTools SNP 93792 93792 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1619 SAMTools SNP 94542 94542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1619 SAMTools SNP 95283 95283 123 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C47%2C32%2C149%2C0%2C146:27 scaffold1619 SAMTools SNP 95289 95289 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1619 SAMTools SNP 95316 95316 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1619 SAMTools SNP 95325 95325 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1619 SAMTools SNP 96380 96380 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 96526 96526 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 97107 97107 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 97122 97122 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 97134 97134 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 97173 97173 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.11%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1619 SAMTools SNP 97561 97561 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1619 SAMTools SNP 97823 97823 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C18%2C0:33 scaffold1619 SAMTools SNP 99194 99194 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 99389 99389 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C1%3BMQ%3D47%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C189:99 scaffold1619 SAMTools SNP 99621 99621 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C7%3BMQ%3D47%3BFQ%3D96%3BPV4%3D1%2C0.44%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1619 SAMTools SNP 100460 100460 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1619 SAMTools SNP 100500 100500 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1619 SAMTools SNP 100534 100534 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1619 SAMTools SNP 102038 102038 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1619 SAMTools SNP 102085 102085 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 102534 102534 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1619 SAMTools SNP 102544 102544 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C27%2C0:51 scaffold1619 SAMTools SNP 103264 103264 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1619 SAMTools SNP 103713 103713 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D38%3BFQ%3D-34%3BPV4%3D1%2C0.29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C7%2C0:12 scaffold1619 SAMTools SNP 104085 104085 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1619 SAMTools SNP 104118 104118 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold1619 SAMTools SNP 104702 104702 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1619 SAMTools SNP 106061 106061 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1619 SAMTools SNP 108238 108238 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold1619 SAMTools SNP 108327 108327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C14%3BMQ%3D45%3BFQ%3D-100%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold1619 SAMTools SNP 109483 109483 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C22%3BMQ%3D46%3BFQ%3D-120%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1619 SAMTools SNP 111344 111344 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D47%3BFQ%3D-45%3BPV4%3D0.44%2C0.31%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold1619 SAMTools SNP 116008 116008 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold1619 SAMTools SNP 196660 196660 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1619 SAMTools SNP 196851 196851 22.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1619 SAMTools SNP 197319 197319 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D27%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C75%2C0:95 scaffold1619 SAMTools SNP 197601 197601 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D49%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1619 SAMTools SNP 201820 201820 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 201831 201831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C95%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D6.6e-06%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold1619 SAMTools SNP 240467 240467 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 240723 240723 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1619 SAMTools SNP 242343 242343 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1619 SAMTools SNP 242364 242364 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1619 SAMTools SNP 242804 242804 77.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold162 SAMTools SNP 6522 6522 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 16962 16962 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold162 SAMTools SNP 25983 25983 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold162 SAMTools SNP 32457 32457 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 90775 90775 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold162 SAMTools SNP 90832 90832 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold162 SAMTools SNP 95084 95084 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold162 SAMTools SNP 97764 97764 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold162 SAMTools SNP 97844 97844 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold162 SAMTools SNP 103747 103747 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold162 SAMTools SNP 103758 103758 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 103775 103775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold162 SAMTools SNP 104085 104085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold162 SAMTools SNP 135464 135464 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold162 SAMTools SNP 135491 135491 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.35%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C226:50 scaffold162 SAMTools SNP 135868 135868 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C30%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.16%2C0.27%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold162 SAMTools SNP 135886 135886 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold162 SAMTools SNP 135907 135907 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C5%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold162 SAMTools SNP 135937 135937 45.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold162 SAMTools SNP 135967 135967 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C4%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.23%2C3e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold162 SAMTools SNP 136009 136009 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold162 SAMTools SNP 136057 136057 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C193:99 scaffold162 SAMTools SNP 136075 136075 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold162 SAMTools SNP 136563 136563 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.29%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold162 SAMTools SNP 136627 136627 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold162 SAMTools SNP 137019 137019 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold162 SAMTools SNP 143970 143970 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold162 SAMTools SNP 146673 146673 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold162 SAMTools SNP 149828 149828 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C7%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 150365 150365 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 150425 150425 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 150823 150823 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C10%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.011%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 150844 150844 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C0%2C42%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0078%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold162 SAMTools SNP 150990 150990 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C45%2C0:68 scaffold162 SAMTools SNP 154110 154110 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.1e-07%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C176:69 scaffold162 SAMTools SNP 155415 155415 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold162 SAMTools SNP 155422 155422 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold162 SAMTools SNP 155436 155436 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 155580 155580 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold162 SAMTools SNP 155903 155903 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold162 SAMTools SNP 155958 155958 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold162 SAMTools SNP 155966 155966 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold162 SAMTools SNP 156523 156523 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold162 SAMTools SNP 156903 156903 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold162 SAMTools SNP 156924 156924 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0026%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C201:59 scaffold162 SAMTools SNP 157018 157018 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold162 SAMTools SNP 161098 161098 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C0%2C19%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.00018%2C3e-07%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold162 SAMTools SNP 161927 161927 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold162 SAMTools SNP 162262 162262 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.017%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold162 SAMTools SNP 162268 162268 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C219:31 scaffold162 SAMTools SNP 162270 162270 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.56%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C246:81 scaffold162 SAMTools SNP 162283 162283 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C0%2C27%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C202:99 scaffold162 SAMTools SNP 162291 162291 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C63%2C0%2C18%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C248:54 scaffold162 SAMTools SNP 162304 162304 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C68%2C0%2C13%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold162 SAMTools SNP 162701 162701 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.052%2C0.38%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold162 SAMTools SNP 165013 165013 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C54%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold162 SAMTools SNP 165019 165019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C39%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold162 SAMTools SNP 165363 165363 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C34%2C22%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 165951 165951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold162 SAMTools SNP 166468 166468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold162 SAMTools SNP 166503 166503 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold162 SAMTools SNP 173471 173471 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 173483 173483 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold162 SAMTools SNP 177074 177074 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold162 SAMTools SNP 183729 183729 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 185284 185284 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold162 SAMTools SNP 188228 188228 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold162 SAMTools SNP 195004 195004 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C73:76 scaffold162 SAMTools SNP 195021 195021 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.24%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C112:99 scaffold162 SAMTools SNP 195051 195051 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold162 SAMTools SNP 201140 201140 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 205158 205158 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 207522 207522 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold162 SAMTools SNP 208153 208153 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold162 SAMTools SNP 212395 212395 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C20%2C45%2C19%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.56%2C3.5e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold162 SAMTools SNP 212636 212636 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C24%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.8%2C2.3e-97%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold162 SAMTools SNP 213937 213937 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold162 SAMTools SNP 214206 214206 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.1%2C2.1e-20%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold162 SAMTools SNP 215799 215799 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold162 SAMTools SNP 215893 215893 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C110%2C6%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-12%2C1%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 217476 217476 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold162 SAMTools SNP 246050 246050 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D0.33%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold162 SAMTools SNP 254499 254499 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold162 SAMTools SNP 255346 255346 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.19%2C2.9e-10%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C247:47 scaffold162 SAMTools SNP 255368 255368 49.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold162 SAMTools SNP 255532 255532 24.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold162 SAMTools SNP 256276 256276 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold162 SAMTools SNP 256578 256578 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold162 SAMTools SNP 256589 256589 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold162 SAMTools SNP 256612 256612 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold162 SAMTools SNP 257822 257822 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold162 SAMTools SNP 258750 258750 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold162 SAMTools SNP 258765 258765 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold162 SAMTools SNP 258768 258768 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold162 SAMTools SNP 261791 261791 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 261810 261810 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 283499 283499 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold162 SAMTools SNP 309793 309793 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold162 SAMTools SNP 311362 311362 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C200:99 scaffold162 SAMTools SNP 312335 312335 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold162 SAMTools SNP 313745 313745 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold162 SAMTools SNP 317375 317375 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 317383 317383 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 317409 317409 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 317868 317868 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold162 SAMTools SNP 317896 317896 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold162 SAMTools SNP 318019 318019 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 318197 318197 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 318444 318444 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C157:99 scaffold162 SAMTools SNP 318456 318456 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold162 SAMTools SNP 318881 318881 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold162 SAMTools SNP 319164 319164 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 319225 319225 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold162 SAMTools SNP 322343 322343 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold162 SAMTools SNP 322376 322376 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold162 SAMTools SNP 322390 322390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold162 SAMTools SNP 322412 322412 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.2%2C1e-06%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold162 SAMTools SNP 322715 322715 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold162 SAMTools SNP 322733 322733 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold162 SAMTools SNP 322841 322841 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 323823 323823 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 323829 323829 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 323919 323919 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 325015 325015 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold162 SAMTools SNP 325405 325405 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold162 SAMTools SNP 325420 325420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold162 SAMTools SNP 325625 325625 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold162 SAMTools SNP 325626 325626 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold162 SAMTools SNP 325767 325767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold162 SAMTools SNP 325782 325782 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold162 SAMTools SNP 326195 326195 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C44%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold162 SAMTools SNP 326204 326204 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold162 SAMTools SNP 326255 326255 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold162 SAMTools SNP 326376 326376 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold162 SAMTools SNP 326503 326503 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold162 SAMTools SNP 326511 326511 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 326529 326529 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 326799 326799 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold162 SAMTools SNP 327062 327062 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold162 SAMTools SNP 327086 327086 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 328272 328272 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold162 SAMTools SNP 328315 328315 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold162 SAMTools SNP 328468 328468 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold162 SAMTools SNP 329988 329988 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold162 SAMTools SNP 330229 330229 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C36%2C0:69 scaffold162 SAMTools SNP 330467 330467 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.067%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C142:99 scaffold162 SAMTools SNP 330503 330503 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold162 SAMTools SNP 330688 330688 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 330706 330706 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.071%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold162 SAMTools SNP 330727 330727 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold162 SAMTools SNP 331140 331140 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold162 SAMTools SNP 331312 331312 59.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold162 SAMTools SNP 331542 331542 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold162 SAMTools SNP 331596 331596 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold162 SAMTools SNP 331846 331846 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold162 SAMTools SNP 331982 331982 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C37%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 332504 332504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C52%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 332597 332597 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C11%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C2.6e-20%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold162 SAMTools SNP 332651 332651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C235:99 scaffold162 SAMTools SNP 332669 332669 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.29%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 333023 333023 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.52%2C7.7e-05%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold162 SAMTools SNP 333032 333032 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.22%2C0.37%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold162 SAMTools SNP 333033 333033 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.22%2C0.36%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold162 SAMTools SNP 333070 333070 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold162 SAMTools SNP 333205 333205 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold162 SAMTools SNP 333223 333223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C25%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 333271 333271 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.4%2C4.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold162 SAMTools SNP 333313 333313 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 333732 333732 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 333750 333750 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.004%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 333804 333804 71 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C86%2C77%2C103%2C0%2C97:16 scaffold162 SAMTools SNP 333813 333813 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold162 SAMTools SNP 333816 333816 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.045%2C1%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C207:99 scaffold162 SAMTools SNP 336615 336615 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 339934 339934 34.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold162 SAMTools SNP 340382 340382 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold162 SAMTools SNP 340432 340432 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold162 SAMTools SNP 345325 345325 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold162 SAMTools SNP 345352 345352 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C179:99 scaffold162 SAMTools SNP 345382 345382 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold162 SAMTools SNP 345417 345417 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold162 SAMTools SNP 351260 351260 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C89%2C2%3BMQ%3D50%3BFQ%3D-265%3BPV4%3D1%2C9.7e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C238%2C0:99 scaffold162 SAMTools SNP 351851 351851 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold162 SAMTools SNP 354531 354531 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold162 SAMTools SNP 356285 356285 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold162 SAMTools SNP 356307 356307 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold162 SAMTools SNP 359234 359234 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold162 SAMTools SNP 359249 359249 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold162 SAMTools SNP 359258 359258 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold162 SAMTools SNP 359303 359303 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold162 SAMTools SNP 360212 360212 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C124:99 scaffold162 SAMTools SNP 360252 360252 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold162 SAMTools SNP 361429 361429 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.044%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold162 SAMTools SNP 361488 361488 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold162 SAMTools SNP 361775 361775 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold162 SAMTools SNP 362419 362419 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C48%2C0:93 scaffold162 SAMTools SNP 362464 362464 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.38%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 363194 363194 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 363224 363224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold162 SAMTools SNP 363458 363458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold162 SAMTools SNP 363500 363500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.15%2C0.26%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold162 SAMTools SNP 365125 365125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold162 SAMTools SNP 365134 365134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold162 SAMTools SNP 366088 366088 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold162 SAMTools SNP 366107 366107 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold162 SAMTools SNP 370554 370554 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold162 SAMTools SNP 370601 370601 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold162 SAMTools SNP 371112 371112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold162 SAMTools SNP 371923 371923 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C2.4e-10%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold162 SAMTools SNP 371951 371951 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold162 SAMTools SNP 371981 371981 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold162 SAMTools SNP 374262 374262 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold162 SAMTools SNP 374788 374788 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold162 SAMTools SNP 374848 374848 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold162 SAMTools SNP 377405 377405 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.33%2C0.00046%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1625 SAMTools SNP 2689 2689 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1625 SAMTools SNP 5896 5896 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C7%2C10%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.042%2C1.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1625 SAMTools SNP 5990 5990 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C25%2C20%3BMQ%3D49%3BFQ%3D48%3BPV4%3D0.65%2C6.3e-21%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold1625 SAMTools SNP 6035 6035 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1625 SAMTools SNP 6060 6060 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C1%2C13%3BMQ%3D47%3BFQ%3D104%3BPV4%3D0.52%2C1.5e-05%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C237:99 scaffold1625 SAMTools SNP 6087 6087 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C8%3BMQ%3D44%3BFQ%3D136%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C238:99 scaffold1625 SAMTools SNP 6088 6088 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C10%3BMQ%3D44%3BFQ%3D166%3BPV4%3D0.64%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C233:99 scaffold1625 SAMTools SNP 6105 6105 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C10%3BMQ%3D45%3BFQ%3D164%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C238:99 scaffold1625 SAMTools SNP 6437 6437 65.1 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold1625 SAMTools SNP 6438 6438 49.3 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1625 SAMTools SNP 34750 34750 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1625 SAMTools SNP 35510 35510 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1625 SAMTools SNP 37662 37662 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1625 SAMTools SNP 38745 38745 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1625 SAMTools SNP 38775 38775 52.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold1625 SAMTools SNP 38833 38833 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1625 SAMTools SNP 38886 38886 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C5.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C107:88 scaffold1625 SAMTools SNP 40413 40413 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1625 SAMTools SNP 40482 40482 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1625 SAMTools SNP 40514 40514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1625 SAMTools SNP 41535 41535 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1625 SAMTools SNP 41555 41555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1625 SAMTools SNP 41851 41851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-194%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C0:99 scaffold1625 SAMTools SNP 41923 41923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1625 SAMTools SNP 43854 43854 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C90%2C0:99 scaffold1625 SAMTools SNP 44043 44043 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C30%2C0:57 scaffold1625 SAMTools SNP 48309 48309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C17%2C19%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-08%2C1%2C1%2C1.8e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1625 SAMTools SNP 48993 48993 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C5%2C17%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.52%2C3.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1625 SAMTools SNP 49074 49074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1625 SAMTools SNP 50414 50414 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.024%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1625 SAMTools SNP 51799 51799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1625 SAMTools SNP 51834 51834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1625 SAMTools SNP 51924 51924 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1625 SAMTools SNP 54349 54349 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C22%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.33%2C8.4e-16%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C237:99 scaffold1625 SAMTools SNP 54609 54609 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C9%2C25%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.047%2C3.5e-37%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C189:99 scaffold1625 SAMTools SNP 54789 54789 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold1625 SAMTools SNP 54856 54856 49.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold1625 SAMTools SNP 154444 154444 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1625 SAMTools SNP 169360 169360 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1625 SAMTools SNP 169366 169366 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1625 SAMTools SNP 174594 174594 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1625 SAMTools SNP 174703 174703 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1625 SAMTools SNP 176344 176344 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1627 SAMTools SNP 245 245 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 273 273 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 11650 11650 140 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C52%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C220%2C0:99 scaffold1627 SAMTools SNP 11726 11726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1627 SAMTools SNP 12255 12255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1627 SAMTools SNP 12268 12268 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1627 SAMTools SNP 16155 16155 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1627 SAMTools SNP 22278 22278 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C58%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D8.1e-06%2C1.7e-101%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1627 SAMTools SNP 26044 26044 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1627 SAMTools SNP 33605 33605 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold1627 SAMTools SNP 33646 33646 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C71:34 scaffold1627 SAMTools SNP 101538 101538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1627 SAMTools SNP 101665 101665 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1627 SAMTools SNP 111570 111570 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1627 SAMTools SNP 116315 116315 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 116452 116452 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 120989 120989 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold1627 SAMTools SNP 121812 121812 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1627 SAMTools SNP 122109 122109 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1627 SAMTools SNP 122158 122158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 127928 127928 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1627 SAMTools SNP 128207 128207 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold1627 SAMTools SNP 136534 136534 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 140606 140606 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1627 SAMTools SNP 156231 156231 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.052%2C0.13%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C242:99 scaffold1627 SAMTools SNP 156459 156459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1627 SAMTools SNP 156479 156479 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.03%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1627 SAMTools SNP 156486 156486 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C40%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1627 SAMTools SNP 156764 156764 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C15%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D8.8e-05%2C1%2C0.42%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1627 SAMTools SNP 156794 156794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C3%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C1%2C0.19%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1627 SAMTools SNP 156800 156800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00083%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1627 SAMTools SNP 156818 156818 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C3%3BMQ%3D48%3BFQ%3D44%3BPV4%3D0.29%2C1%2C0.12%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1627 SAMTools SNP 156825 156825 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C6%3BMQ%3D49%3BFQ%3D71%3BPV4%3D0.046%2C0.0029%2C0.052%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1627 SAMTools SNP 157614 157614 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold1627 SAMTools SNP 157650 157650 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1627 SAMTools SNP 157845 157845 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1627 SAMTools SNP 157994 157994 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C209:41 scaffold1627 SAMTools SNP 158045 158045 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1627 SAMTools SNP 158379 158379 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1627 SAMTools SNP 158382 158382 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 158422 158422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C16%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1627 SAMTools SNP 158503 158503 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1627 SAMTools SNP 158578 158578 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C44%2C15%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold1627 SAMTools SNP 158647 158647 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1627 SAMTools SNP 158688 158688 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1627 SAMTools SNP 158719 158719 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1627 SAMTools SNP 158842 158842 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C160:99 scaffold1627 SAMTools SNP 158893 158893 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1627 SAMTools SNP 158923 158923 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1627 SAMTools SNP 159078 159078 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1627 SAMTools SNP 159081 159081 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1627 SAMTools SNP 159404 159404 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1627 SAMTools SNP 160315 160315 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C127:99 scaffold1627 SAMTools SNP 160363 160363 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold1627 SAMTools SNP 160703 160703 68.3 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C154%2C169%2C0%2C154:27 scaffold1627 SAMTools SNP 160706 160706 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1627 SAMTools SNP 160742 160742 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1627 SAMTools SNP 161048 161048 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 161746 161746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C39%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1627 SAMTools SNP 175229 175229 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1627 SAMTools SNP 175486 175486 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1627 SAMTools SNP 177606 177606 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 179056 179056 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 179067 179067 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 192957 192957 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1627 SAMTools SNP 193008 193008 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 193100 193100 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1627 SAMTools SNP 193169 193169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 193721 193721 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1627 SAMTools SNP 194917 194917 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1627 SAMTools SNP 203635 203635 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1627 SAMTools SNP 218421 218421 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C26:29 scaffold1627 SAMTools SNP 219087 219087 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1627 SAMTools SNP 219348 219348 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold163 SAMTools SNP 5190 5190 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 5269 5269 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 5320 5320 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold163 SAMTools SNP 6522 6522 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0025%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold163 SAMTools SNP 7170 7170 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 7900 7900 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.41%2C0.028%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold163 SAMTools SNP 8594 8594 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 8624 8624 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 9103 9103 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold163 SAMTools SNP 12527 12527 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold163 SAMTools SNP 12548 12548 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold163 SAMTools SNP 12560 12560 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.2%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold163 SAMTools SNP 12596 12596 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold163 SAMTools SNP 15863 15863 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold163 SAMTools SNP 15913 15913 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 15928 15928 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold163 SAMTools SNP 16363 16363 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold163 SAMTools SNP 16372 16372 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold163 SAMTools SNP 16393 16393 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold163 SAMTools SNP 16400 16400 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold163 SAMTools SNP 16421 16421 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.19%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold163 SAMTools SNP 16872 16872 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold163 SAMTools SNP 17615 17615 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 17670 17670 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold163 SAMTools SNP 18243 18243 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold163 SAMTools SNP 18727 18727 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 19589 19589 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 19651 19651 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 20113 20113 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold163 SAMTools SNP 20138 20138 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold163 SAMTools SNP 20158 20158 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold163 SAMTools SNP 20639 20639 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold163 SAMTools SNP 21614 21614 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 22426 22426 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C81%2C0:99 scaffold163 SAMTools SNP 22760 22760 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold163 SAMTools SNP 26782 26782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.7%2C1%2C0.17%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 29189 29189 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C6%3BMQ%3D48%3BFQ%3D114%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold163 SAMTools SNP 29612 29612 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold163 SAMTools SNP 31319 31319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold163 SAMTools SNP 31358 31358 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 32482 32482 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold163 SAMTools SNP 41083 41083 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C18%2C0:33 scaffold163 SAMTools SNP 41364 41364 58.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold163 SAMTools SNP 41436 41436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C34%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold163 SAMTools SNP 41664 41664 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C20%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.068%2C1.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold163 SAMTools SNP 42402 42402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C2%2C16%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.15%2C0.19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold163 SAMTools SNP 42623 42623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 43642 43642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 46535 46535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 47093 47093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C29%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold163 SAMTools SNP 48506 48506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold163 SAMTools SNP 48777 48777 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold163 SAMTools SNP 50365 50365 84.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold163 SAMTools SNP 50622 50622 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold163 SAMTools SNP 50634 50634 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C182:99 scaffold163 SAMTools SNP 51206 51206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold163 SAMTools SNP 52387 52387 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold163 SAMTools SNP 54936 54936 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C30%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 54969 54969 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C6%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.067%2C0.4%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold163 SAMTools SNP 54993 54993 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 55086 55086 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold163 SAMTools SNP 55495 55495 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 55525 55525 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 55546 55546 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C15%2C0:27 scaffold163 SAMTools SNP 55591 55591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold163 SAMTools SNP 56102 56102 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00079%2C3e-20%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold163 SAMTools SNP 56162 56162 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold163 SAMTools SNP 56391 56391 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 97850 97850 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold163 SAMTools SNP 111065 111065 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold163 SAMTools SNP 132773 132773 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 132803 132803 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold163 SAMTools SNP 141398 141398 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C124%2C7%2C13%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold163 SAMTools SNP 142363 142363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C42%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.064%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 143513 143513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0092%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold163 SAMTools SNP 143567 143567 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold163 SAMTools SNP 143579 143579 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold163 SAMTools SNP 143786 143786 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 147068 147068 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C48%2C0:77 scaffold163 SAMTools SNP 147338 147338 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.5e-12%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C240:37 scaffold163 SAMTools SNP 148465 148465 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C144%2C0:99 scaffold163 SAMTools SNP 148711 148711 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold163 SAMTools SNP 149868 149868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold163 SAMTools SNP 150146 150146 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C46%2C10%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 152187 152187 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C15%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold163 SAMTools SNP 153933 153933 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold163 SAMTools SNP 155097 155097 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold163 SAMTools SNP 156109 156109 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold163 SAMTools SNP 156136 156136 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold163 SAMTools SNP 159842 159842 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold163 SAMTools SNP 159851 159851 38.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold163 SAMTools SNP 171232 171232 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold163 SAMTools SNP 171263 171263 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold163 SAMTools SNP 172016 172016 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold163 SAMTools SNP 172079 172079 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold163 SAMTools SNP 172136 172136 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold163 SAMTools SNP 172145 172145 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold163 SAMTools SNP 172577 172577 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 172578 172578 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 172712 172712 40.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold163 SAMTools SNP 172790 172790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold163 SAMTools SNP 173323 173323 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold163 SAMTools SNP 174489 174489 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 174498 174498 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 177871 177871 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 177970 177970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 179041 179041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 179441 179441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C39%2C29%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 179495 179495 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C16%2C37%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C4.6e-16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 179921 179921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C79%2C6%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 180002 180002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C22%2C66%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 180032 180032 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C66%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 181468 181468 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C84%2C3%2C20%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.36%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold163 SAMTools SNP 181482 181482 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C82%2C2%2C16%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.21%2C1%2C1%2C5.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold163 SAMTools SNP 183685 183685 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C27%2C0:46 scaffold163 SAMTools SNP 184641 184641 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold163 SAMTools SNP 192558 192558 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold163 SAMTools SNP 201203 201203 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold163 SAMTools SNP 202196 202196 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold163 SAMTools SNP 203989 203989 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold163 SAMTools SNP 204935 204935 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold163 SAMTools SNP 206408 206408 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold163 SAMTools SNP 207188 207188 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.67%2C8.7e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold163 SAMTools SNP 207875 207875 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C10%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C6.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold163 SAMTools SNP 208850 208850 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.63%2C1.5e-10%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold163 SAMTools SNP 208976 208976 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.00032%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C124:93 scaffold163 SAMTools SNP 209590 209590 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C45%2C0:87 scaffold163 SAMTools SNP 210527 210527 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.5e-12%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold163 SAMTools SNP 210689 210689 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C4%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.18%2C5.9e-22%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold163 SAMTools SNP 210914 210914 25.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold163 SAMTools SNP 211458 211458 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold163 SAMTools SNP 211472 211472 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 211793 211793 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 211869 211869 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 212044 212044 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 212107 212107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 212917 212917 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C2%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold163 SAMTools SNP 213942 213942 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold163 SAMTools SNP 219073 219073 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.035%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 219191 219191 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C1%2C23%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.42%2C1.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C253:99 scaffold163 SAMTools SNP 220197 220197 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold163 SAMTools SNP 220233 220233 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold163 SAMTools SNP 227099 227099 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1022%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C271%2C208%2C354%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.3%2C2.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 228353 228353 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C52%2C13%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 228371 228371 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C92%2C7%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0099%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 228398 228398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C83%2C6%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 228991 228991 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 229003 229003 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.27%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 229012 229012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 229320 229320 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C18%2C4%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.0093%2C0.011%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold163 SAMTools SNP 230190 230190 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C81%2C21%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1.3e-05%2C1%2C1%2C1.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold163 SAMTools SNP 230212 230212 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C33%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold163 SAMTools SNP 230930 230930 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold163 SAMTools SNP 231481 231481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C18%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold163 SAMTools SNP 232284 232284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.43%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 234038 234038 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold163 SAMTools SNP 235073 235073 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C2e-68%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C213:67 scaffold163 SAMTools SNP 238218 238218 18.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold163 SAMTools SNP 238505 238505 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.21%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C142:99 scaffold163 SAMTools SNP 239187 239187 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C33%2C0:63 scaffold163 SAMTools SNP 242146 242146 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold163 SAMTools SNP 242180 242180 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C6:9 scaffold163 SAMTools SNP 242215 242215 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.12%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold163 SAMTools SNP 243741 243741 70.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold163 SAMTools SNP 244285 244285 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.066%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold163 SAMTools SNP 244291 244291 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold163 SAMTools SNP 244334 244334 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold163 SAMTools SNP 244381 244381 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.003%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold163 SAMTools SNP 244405 244405 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold163 SAMTools SNP 244881 244881 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 244882 244882 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 244969 244969 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C84%2C0:99 scaffold163 SAMTools SNP 245627 245627 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold163 SAMTools SNP 245630 245630 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold163 SAMTools SNP 245670 245670 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold163 SAMTools SNP 245680 245680 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold163 SAMTools SNP 246599 246599 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.03%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C154:99 scaffold163 SAMTools SNP 246608 246608 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C177:99 scaffold163 SAMTools SNP 246636 246636 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold163 SAMTools SNP 246686 246686 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 247197 247197 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 247379 247379 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 247391 247391 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 247730 247730 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 247790 247790 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold163 SAMTools SNP 248312 248312 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold163 SAMTools SNP 248719 248719 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold163 SAMTools SNP 249037 249037 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold163 SAMTools SNP 249048 249048 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold163 SAMTools SNP 250845 250845 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 251136 251136 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C39%2C0:75 scaffold163 SAMTools SNP 251301 251301 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold163 SAMTools SNP 252284 252284 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 253820 253820 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold163 SAMTools SNP 256135 256135 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 256200 256200 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 260289 260289 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold163 SAMTools SNP 274656 274656 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.9e-11%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C180:88 scaffold163 SAMTools SNP 274780 274780 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C27%2C0:51 scaffold163 SAMTools SNP 274827 274827 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C112:78 scaffold163 SAMTools SNP 284852 284852 26.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold163 SAMTools SNP 294438 294438 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 299455 299455 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 300723 300723 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C1.2e-07%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C205:39 scaffold163 SAMTools SNP 332279 332279 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold163 SAMTools SNP 332745 332745 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 339283 339283 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C193%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 344220 344220 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C57%2C72%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1e-07%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold163 SAMTools SNP 344229 344229 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C52%2C79%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1.8e-08%2C1.8e-14%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold163 SAMTools SNP 344350 344350 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold163 SAMTools SNP 344372 344372 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C31%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold163 SAMTools SNP 345998 345998 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold163 SAMTools SNP 346068 346068 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C13%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold163 SAMTools SNP 346464 346464 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C42%2C0:81 scaffold163 SAMTools SNP 346532 346532 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C56%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold163 SAMTools SNP 346559 346559 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 346926 346926 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C0%2C40%3BMQ%3D50%3BFQ%3D22%3BPV4%3D3.5e-08%2C7.2e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold163 SAMTools SNP 346944 346944 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C3%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold163 SAMTools SNP 346963 346963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold163 SAMTools SNP 347691 347691 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C40%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 348891 348891 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold163 SAMTools SNP 350736 350736 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 350743 350743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C21%2C142%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 350790 350790 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D523%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D234%2C33%2C212%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 350961 350961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C62%2C127%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-05%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 350972 350972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C106%2C89%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 351507 351507 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C79%2C76%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 351595 351595 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C112%2C36%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D2.2e-13%2C1%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold163 SAMTools SNP 352212 352212 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold163 SAMTools SNP 354061 354061 34.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold163 SAMTools SNP 354792 354792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C40%2C25%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C2.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 354807 354807 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C34%2C34%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.13%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold163 SAMTools SNP 355671 355671 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 355773 355773 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C79%2C53%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-06%2C4e-08%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 356147 356147 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D503%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D258%2C9%2C211%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 356549 356549 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1009%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold163 SAMTools SNP 356971 356971 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C58%2C60%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 357034 357034 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C98%2C52%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C0.31%2C1%2C4.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 357395 357395 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C98%2C28%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 358891 358891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C25%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 358975 358975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 359832 359832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1145%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C297%2C602%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 359958 359958 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D605%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C110%2C150%2C272%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.088%2C8.8e-296%2C1%2C2.4e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold163 SAMTools SNP 359980 359980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D551%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C110%2C12%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.08%2C1%2C1.1e-54;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 360029 360029 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C208%2C29%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C7.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 360202 360202 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C165%2C29%2C43%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold163 SAMTools SNP 360229 360229 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C99%2C29%2C8%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold163 SAMTools SNP 361637 361637 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C11%2C84%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 361957 361957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C50%2C198%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-07%2C1.6e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 361971 361971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold163 SAMTools SNP 362245 362245 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 363619 363619 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D225%2C60%2C127%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 363703 363703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C143%2C142%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 364130 364130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D654%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C284%2C28%2C327%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1.4e-15%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 364188 364188 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C67%2C5%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0013%2C0.029%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold163 SAMTools SNP 367380 367380 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.019%2C0.0056%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold163 SAMTools SNP 374349 374349 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold163 SAMTools SNP 374367 374367 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.066%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold163 SAMTools SNP 375600 375600 17.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold163 SAMTools SNP 376318 376318 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold163 SAMTools SNP 376342 376342 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 379993 379993 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold163 SAMTools SNP 380241 380241 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 383380 383380 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold163 SAMTools SNP 383875 383875 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold163 SAMTools SNP 383890 383890 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold163 SAMTools SNP 383902 383902 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.55%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold163 SAMTools SNP 386789 386789 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C22%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.57%2C0.18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold163 SAMTools SNP 386897 386897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C19%3BMQ%3D50%3BFQ%3D-56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C29%2C0:55 scaffold163 SAMTools SNP 387315 387315 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold163 SAMTools SNP 387330 387330 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold163 SAMTools SNP 387390 387390 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold163 SAMTools SNP 388300 388300 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 414923 414923 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D37%3BFQ%3D37%3BPV4%3D0.5%2C1%2C0.43%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C169:67 scaffold163 SAMTools SNP 414947 414947 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C9%3BMQ%3D43%3BFQ%3D161%3BPV4%3D0.45%2C0.23%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C188:99 scaffold163 SAMTools SNP 415331 415331 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold163 SAMTools SNP 415332 415332 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold163 SAMTools SNP 415354 415354 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold163 SAMTools SNP 415510 415510 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold163 SAMTools SNP 415538 415538 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold163 SAMTools SNP 415986 415986 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold163 SAMTools SNP 421712 421712 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C239:99 scaffold163 SAMTools SNP 422053 422053 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C20%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.00027%2C1.5e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold163 SAMTools SNP 431327 431327 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold163 SAMTools SNP 431872 431872 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 432309 432309 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold163 SAMTools SNP 432336 432336 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold163 SAMTools SNP 439606 439606 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold163 SAMTools SNP 440128 440128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 440731 440731 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold163 SAMTools SNP 441480 441480 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold163 SAMTools SNP 441693 441693 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 442419 442419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 443082 443082 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold163 SAMTools SNP 444378 444378 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold163 SAMTools SNP 444893 444893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold163 SAMTools SNP 445750 445750 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.084%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold163 SAMTools SNP 446129 446129 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.31%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold163 SAMTools SNP 446132 446132 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.61%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C194:99 scaffold163 SAMTools SNP 446198 446198 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold163 SAMTools SNP 446208 446208 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold163 SAMTools SNP 447159 447159 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C154:99 scaffold163 SAMTools SNP 447168 447168 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold163 SAMTools SNP 447241 447241 67.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold163 SAMTools SNP 447793 447793 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold163 SAMTools SNP 449373 449373 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold163 SAMTools SNP 450703 450703 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D22%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold163 SAMTools SNP 452161 452161 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D35%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C48%2C0:93 scaffold163 SAMTools SNP 452193 452193 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold163 SAMTools SNP 452432 452432 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C13%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.39%2C9.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C246:54 scaffold163 SAMTools SNP 452507 452507 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 455945 455945 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 456031 456031 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold163 SAMTools SNP 456047 456047 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold163 SAMTools SNP 458845 458845 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 458848 458848 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 458914 458914 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold163 SAMTools SNP 459281 459281 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold163 SAMTools SNP 459335 459335 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold163 SAMTools SNP 459701 459701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold163 SAMTools SNP 459707 459707 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C4%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.16%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold163 SAMTools SNP 460668 460668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold163 SAMTools SNP 461703 461703 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold163 SAMTools SNP 461740 461740 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold163 SAMTools SNP 462111 462111 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C38%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold163 SAMTools SNP 462658 462658 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 463145 463145 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 463148 463148 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold163 SAMTools SNP 463230 463230 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 463631 463631 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0036%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold163 SAMTools SNP 499301 499301 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold163 SAMTools SNP 499487 499487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold163 SAMTools SNP 499711 499711 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold163 SAMTools SNP 499825 499825 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold163 SAMTools SNP 507371 507371 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold163 SAMTools SNP 507425 507425 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 25738 25738 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 25763 25763 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 25823 25823 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 57996 57996 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C87%2C0:99 scaffold1630 SAMTools SNP 61609 61609 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold1630 SAMTools SNP 65317 65317 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1630 SAMTools SNP 65335 65335 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1630 SAMTools SNP 66113 66113 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C11%2C22%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1630 SAMTools SNP 66178 66178 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1630 SAMTools SNP 66224 66224 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.13%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1630 SAMTools SNP 66563 66563 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1630 SAMTools SNP 66612 66612 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.2%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1630 SAMTools SNP 66614 66614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 66620 66620 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 67279 67279 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1630 SAMTools SNP 67769 67769 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C74%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1630 SAMTools SNP 67844 67844 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 67889 67889 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1630 SAMTools SNP 67895 67895 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1630 SAMTools SNP 68597 68597 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1630 SAMTools SNP 71400 71400 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1630 SAMTools SNP 71428 71428 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1630 SAMTools SNP 77185 77185 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1630 SAMTools SNP 77802 77802 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1630 SAMTools SNP 79480 79480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1630 SAMTools SNP 79534 79534 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 80206 80206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C12%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1630 SAMTools SNP 81227 81227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C16%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1630 SAMTools SNP 81593 81593 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1630 SAMTools SNP 81620 81620 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C58%2C0%2C16%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1630 SAMTools SNP 82022 82022 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1630 SAMTools SNP 84334 84334 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1630 SAMTools SNP 86738 86738 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1630 SAMTools SNP 87099 87099 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C140%2C137%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 89865 89865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 89869 89869 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 90689 90689 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1630 SAMTools SNP 90777 90777 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C39%2C0:75 scaffold1630 SAMTools SNP 92255 92255 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C13%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 92286 92286 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1630 SAMTools SNP 92550 92550 22.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C1%2C0:4 scaffold1630 SAMTools SNP 97233 97233 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1630 SAMTools SNP 97395 97395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 99894 99894 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 99918 99918 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C226:99 scaffold1630 SAMTools SNP 99942 99942 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C245:99 scaffold1630 SAMTools SNP 101125 101125 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C9%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1630 SAMTools SNP 105456 105456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C52%2C23%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.8e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 105810 105810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 105888 105888 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1630 SAMTools SNP 105900 105900 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1630 SAMTools SNP 106238 106238 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1630 SAMTools SNP 106268 106268 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.026%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold1630 SAMTools SNP 106274 106274 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.013%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1630 SAMTools SNP 106311 106311 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C24%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D7.6e-05%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C247:99 scaffold1630 SAMTools SNP 106328 106328 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D2.1e-05%2C0.16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C240:99 scaffold1630 SAMTools SNP 106438 106438 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.00012%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1630 SAMTools SNP 106454 106454 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1630 SAMTools SNP 106514 106514 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C28%2C34%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1.3e-08%2C0.001%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1630 SAMTools SNP 107445 107445 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1630 SAMTools SNP 107458 107458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1630 SAMTools SNP 107487 107487 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C0%2C16%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.31%2C0.29%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1630 SAMTools SNP 107506 107506 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C16%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1630 SAMTools SNP 108688 108688 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.015%2C0.04%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C217:49 scaffold1630 SAMTools SNP 108691 108691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1630 SAMTools SNP 108730 108730 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold1630 SAMTools SNP 108754 108754 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1630 SAMTools SNP 108780 108780 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1630 SAMTools SNP 111388 111388 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C18%2C0:33 scaffold1630 SAMTools SNP 112537 112537 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C12%2C0%3BMQ%3D48%3BFQ%3D175%3BPV4%3D0.0084%2C1%2C0.048%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1630 SAMTools SNP 112558 112558 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C18%2C0%3BMQ%3D48%3BFQ%3D209%3BPV4%3D0.0033%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1630 SAMTools SNP 112875 112875 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C2%3BMQ%3D48%3BFQ%3D187%3BPV4%3D1%2C0.34%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1630 SAMTools SNP 131912 131912 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1630 SAMTools SNP 131997 131997 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold1630 SAMTools SNP 132214 132214 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C24%2C0:45 scaffold1630 SAMTools SNP 132656 132656 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1630 SAMTools SNP 186404 186404 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 234170 234170 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1630 SAMTools SNP 235198 235198 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.33%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold1630 SAMTools SNP 235349 235349 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.0079%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C77:79 scaffold1630 SAMTools SNP 237848 237848 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 248337 248337 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1630 SAMTools SNP 248596 248596 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C33%2C0:63 scaffold1630 SAMTools SNP 248892 248892 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1630 SAMTools SNP 291215 291215 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1630 SAMTools SNP 311715 311715 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1630 SAMTools SNP 328034 328034 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C22%3BMQ%3D23%3BFQ%3D17.9%3BPV4%3D0.61%2C1%2C0.093%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C45:48 scaffold1630 SAMTools SNP 328482 328482 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1630 SAMTools SNP 328891 328891 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0021%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C241:37 scaffold1630 SAMTools SNP 329683 329683 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1630 SAMTools SNP 330681 330681 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D35%3BFQ%3D40%3BPV4%3D1%2C0.022%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C120:70 scaffold1630 SAMTools SNP 330693 330693 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D37%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C121:69 scaffold1630 SAMTools SNP 332760 332760 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C0.3%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C5%2C0:9 scaffold1630 SAMTools SNP 338426 338426 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C115:31 scaffold1630 SAMTools SNP 339087 339087 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C75%2C0:99 scaffold1630 SAMTools SNP 339599 339599 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C39%2C0:75 scaffold1631 SAMTools SNP 114710 114710 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1631 SAMTools SNP 115093 115093 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1631 SAMTools SNP 121909 121909 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1631 SAMTools SNP 122488 122488 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0079%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C132:99 scaffold1631 SAMTools SNP 122851 122851 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C108%2C0:99 scaffold1631 SAMTools SNP 123521 123521 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1631 SAMTools SNP 124059 124059 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1631 SAMTools SNP 124935 124935 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1631 SAMTools SNP 125937 125937 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C236:99 scaffold1631 SAMTools SNP 126131 126131 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.37%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold1631 SAMTools SNP 126174 126174 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1631 SAMTools SNP 126219 126219 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1631 SAMTools SNP 127186 127186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1631 SAMTools SNP 127215 127215 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1631 SAMTools SNP 128742 128742 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1631 SAMTools SNP 147358 147358 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C187:99 scaffold1631 SAMTools SNP 151536 151536 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1631 SAMTools SNP 152489 152489 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0014%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1631 SAMTools SNP 152890 152890 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1631 SAMTools SNP 153176 153176 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1631 SAMTools SNP 153215 153215 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.46%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1631 SAMTools SNP 153267 153267 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1631 SAMTools SNP 153876 153876 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1631 SAMTools SNP 157751 157751 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1631 SAMTools SNP 157990 157990 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1631 SAMTools SNP 158042 158042 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1631 SAMTools SNP 159215 159215 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1631 SAMTools SNP 159295 159295 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1631 SAMTools SNP 159314 159314 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1631 SAMTools SNP 159766 159766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1631 SAMTools SNP 159785 159785 55.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold1631 SAMTools SNP 162068 162068 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1631 SAMTools SNP 162329 162329 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1631 SAMTools SNP 162356 162356 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1631 SAMTools SNP 162641 162641 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1631 SAMTools SNP 167175 167175 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C2.2e-10%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C132:99 scaffold1631 SAMTools SNP 167235 167235 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1632 SAMTools SNP 8810 8810 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 8828 8828 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 8917 8917 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 8923 8923 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 29886 29886 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1632 SAMTools SNP 94461 94461 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C46%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C175%2C0:99 scaffold1632 SAMTools SNP 99388 99388 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D533%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold1632 SAMTools SNP 133602 133602 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1632 SAMTools SNP 166571 166571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1632 SAMTools SNP 167042 167042 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.55%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1632 SAMTools SNP 169918 169918 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 181897 181897 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 182984 182984 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1632 SAMTools SNP 182999 182999 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1632 SAMTools SNP 183189 183189 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C172:99 scaffold1632 SAMTools SNP 183225 183225 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1632 SAMTools SNP 183270 183270 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1632 SAMTools SNP 183282 183282 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1632 SAMTools SNP 184942 184942 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1632 SAMTools SNP 184953 184953 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 184955 184955 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1632 SAMTools SNP 184986 184986 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1632 SAMTools SNP 185109 185109 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1632 SAMTools SNP 186731 186731 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C93:96 scaffold1632 SAMTools SNP 187343 187343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1632 SAMTools SNP 187461 187461 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1633 SAMTools SNP 3191 3191 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1633 SAMTools SNP 72734 72734 7.08 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold1633 SAMTools SNP 178768 178768 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1633 SAMTools SNP 251051 251051 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1633 SAMTools SNP 251920 251920 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1633 SAMTools SNP 251959 251959 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1633 SAMTools SNP 252214 252214 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1633 SAMTools SNP 257888 257888 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C17%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1633 SAMTools SNP 260715 260715 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1633 SAMTools SNP 261761 261761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 1447 1447 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D29%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C190%2C0:99 scaffold1634 SAMTools SNP 1471 1471 113 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D25%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C166%2C0%2C133%2C136%2C130:99 scaffold1634 SAMTools SNP 1501 1501 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 2074 2074 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D28%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C187%2C0:99 scaffold1634 SAMTools SNP 4849 4849 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 4891 4891 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1634 SAMTools SNP 5743 5743 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1634 SAMTools SNP 5759 5759 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1634 SAMTools SNP 5779 5779 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1634 SAMTools SNP 6112 6112 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 13693 13693 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1634 SAMTools SNP 24455 24455 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 28665 28665 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1634 SAMTools SNP 28711 28711 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1634 SAMTools SNP 30831 30831 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1634 SAMTools SNP 35933 35933 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1634 SAMTools SNP 67363 67363 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1634 SAMTools SNP 85742 85742 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 93959 93959 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D29%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C54%2C0:99 scaffold1634 SAMTools SNP 93983 93983 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D38%3BFQ%3D8.65%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C35:38 scaffold1634 SAMTools SNP 94909 94909 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C0.4%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1634 SAMTools SNP 100881 100881 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1634 SAMTools SNP 100944 100944 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1634 SAMTools SNP 101712 101712 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1634 SAMTools SNP 101790 101790 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 101886 101886 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1634 SAMTools SNP 102517 102517 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1634 SAMTools SNP 102529 102529 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1634 SAMTools SNP 103961 103961 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1634 SAMTools SNP 104322 104322 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1634 SAMTools SNP 104808 104808 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1634 SAMTools SNP 104916 104916 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1634 SAMTools SNP 105306 105306 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1634 SAMTools SNP 105345 105345 138 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C47%2C35%2C165%2C0%2C162:21 scaffold1634 SAMTools SNP 105764 105764 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1634 SAMTools SNP 106840 106840 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1634 SAMTools SNP 107524 107524 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1634 SAMTools SNP 107615 107615 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1634 SAMTools SNP 107963 107963 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1634 SAMTools SNP 108941 108941 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1634 SAMTools SNP 109926 109926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1634 SAMTools SNP 110118 110118 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C28%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.022%2C0.059%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1634 SAMTools SNP 115652 115652 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.42%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1634 SAMTools SNP 115653 115653 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.4%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1634 SAMTools SNP 116733 116733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1634 SAMTools SNP 116821 116821 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C244:99 scaffold1634 SAMTools SNP 117448 117448 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1634 SAMTools SNP 117460 117460 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1634 SAMTools SNP 117473 117473 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1634 SAMTools SNP 118940 118940 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.32%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold1634 SAMTools SNP 119021 119021 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1634 SAMTools SNP 119051 119051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1634 SAMTools SNP 120036 120036 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1637 SAMTools SNP 7046 7046 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 15566 15566 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1637 SAMTools SNP 15993 15993 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.13%2C5.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1637 SAMTools SNP 16202 16202 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1637 SAMTools SNP 23981 23981 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold1637 SAMTools SNP 24145 24145 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1637 SAMTools SNP 24168 24168 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C21%2C0:39 scaffold1637 SAMTools SNP 24173 24173 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C36%2C0:69 scaffold1637 SAMTools SNP 24292 24292 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1637 SAMTools SNP 24310 24310 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.049%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1637 SAMTools SNP 26131 26131 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D17%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1637 SAMTools SNP 26167 26167 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D19%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold1637 SAMTools SNP 26649 26649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C6%2C77%2C2%3BMQ%3D43%3BFQ%3D207%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1637 SAMTools SNP 27295 27295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C86%3BMQ%3D40%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1637 SAMTools SNP 32641 32641 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1637 SAMTools SNP 40263 40263 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1637 SAMTools SNP 40283 40283 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C67%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D0.029%2C0.27%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C108%2C0:99 scaffold1637 SAMTools SNP 40506 40506 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1637 SAMTools SNP 41409 41409 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C7%2C4%3BMQ%3D45%3BFQ%3D180%3BPV4%3D0.3%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1637 SAMTools SNP 41934 41934 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C5%2C10%3BMQ%3D37%3BFQ%3D191%3BPV4%3D0.44%2C1%2C0.42%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C218:99 scaffold1637 SAMTools SNP 42530 42530 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D39%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C45%2C0:87 scaffold1637 SAMTools SNP 42611 42611 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D10%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C84%2C0:99 scaffold1637 SAMTools SNP 43130 43130 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C62%2C21%2C57%3BMQ%3D36%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 43175 43175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C67%3BMQ%3D40%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1637 SAMTools SNP 43893 43893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D47%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1637 SAMTools SNP 43905 43905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1637 SAMTools SNP 43950 43950 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1637 SAMTools SNP 44028 44028 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C57%2C0:99 scaffold1637 SAMTools SNP 44181 44181 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1637 SAMTools SNP 48871 48871 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C40%2C22%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.49%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 48898 48898 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 52156 52156 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1637 SAMTools SNP 57978 57978 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1637 SAMTools SNP 58187 58187 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1637 SAMTools SNP 65707 65707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C44%3BMQ%3D50%3BFQ%3D-129%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1637 SAMTools SNP 66100 66100 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1637 SAMTools SNP 66106 66106 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C40%2C1%2C20%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.017%2C6.7e-10%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1637 SAMTools SNP 68772 68772 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1637 SAMTools SNP 71145 71145 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1637 SAMTools SNP 81735 81735 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1637 SAMTools SNP 87777 87777 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 94431 94431 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1637 SAMTools SNP 94617 94617 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1637 SAMTools SNP 94658 94658 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.03%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C178:33 scaffold1637 SAMTools SNP 94666 94666 47.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C30%2C18%2C75%2C0%2C72:21 scaffold1637 SAMTools SNP 104376 104376 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C21%2C0:39 scaffold1637 SAMTools SNP 104590 104590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 105137 105137 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1637 SAMTools SNP 108146 108146 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 108772 108772 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1637 SAMTools SNP 118022 118022 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1637 SAMTools SNP 118785 118785 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1637 SAMTools SNP 119152 119152 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1637 SAMTools SNP 168160 168160 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold1637 SAMTools SNP 170315 170315 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 170840 170840 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 170858 170858 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 170870 170870 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 170899 170899 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1637 SAMTools SNP 171719 171719 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1637 SAMTools SNP 179140 179140 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1637 SAMTools SNP 191234 191234 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1637 SAMTools SNP 215410 215410 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 215419 215419 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 216413 216413 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 216485 216485 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 216828 216828 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 226215 226215 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1637 SAMTools SNP 226719 226719 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C155:83 scaffold1637 SAMTools SNP 227216 227216 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1637 SAMTools SNP 227802 227802 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C128:40 scaffold1637 SAMTools SNP 231492 231492 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1637 SAMTools SNP 242589 242589 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 242597 242597 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1637 SAMTools SNP 243220 243220 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1637 SAMTools SNP 244804 244804 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.26%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 244834 244834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C19%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1637 SAMTools SNP 244858 244858 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.037%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1637 SAMTools SNP 246892 246892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 246913 246913 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C18%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.28%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1637 SAMTools SNP 248505 248505 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 250924 250924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1637 SAMTools SNP 252710 252710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1638 SAMTools SNP 52847 52847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1638 SAMTools SNP 52879 52879 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1638 SAMTools SNP 66024 66024 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1638 SAMTools SNP 66592 66592 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C48%2C30%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.027%2C5.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C85:88 scaffold1638 SAMTools SNP 66897 66897 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C1%2C11%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1638 SAMTools SNP 66946 66946 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C54%2C0%2C12%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1638 SAMTools SNP 67079 67079 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C30%2C1%2C12%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0022%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1638 SAMTools SNP 67781 67781 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C28%3BMQ%3D39%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1638 SAMTools SNP 67825 67825 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.046%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1638 SAMTools SNP 68053 68053 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C21%2C20%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.024%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1638 SAMTools SNP 69421 69421 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C16%2C26%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1638 SAMTools SNP 69430 69430 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1638 SAMTools SNP 69659 69659 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C68%2C14%2C4%3BMQ%3D50%3BFQ%3D175%3BPV4%3D3.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1638 SAMTools SNP 77005 77005 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1638 SAMTools SNP 77927 77927 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1638 SAMTools SNP 77984 77984 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1638 SAMTools SNP 77999 77999 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1638 SAMTools SNP 82129 82129 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.63%2C6.8e-23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1638 SAMTools SNP 109982 109982 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C1%2C3%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.45%2C1%2C1%2C4.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1638 SAMTools SNP 109991 109991 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C39%3BMQ%3D49%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1638 SAMTools SNP 111303 111303 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D49%3BFQ%3D135%3BPV4%3D1%2C1%2C0.12%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C216:99 scaffold1638 SAMTools SNP 111304 111304 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D49%3BFQ%3D135%3BPV4%3D1%2C1%2C0.12%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C216:99 scaffold1638 SAMTools SNP 111826 111826 21.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1638 SAMTools SNP 113814 113814 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1638 SAMTools SNP 113831 113831 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1638 SAMTools SNP 114132 114132 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1638 SAMTools SNP 114158 114158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1638 SAMTools SNP 117202 117202 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1638 SAMTools SNP 117364 117364 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1638 SAMTools SNP 117592 117592 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C42:45 scaffold1638 SAMTools SNP 117622 117622 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D35%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C40:43 scaffold1638 SAMTools SNP 117643 117643 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D1%2C0.073%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C80:41 scaffold1638 SAMTools SNP 120198 120198 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1638 SAMTools SNP 120240 120240 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1638 SAMTools SNP 120745 120745 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1638 SAMTools SNP 120787 120787 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1638 SAMTools SNP 125095 125095 10.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1638 SAMTools SNP 126379 126379 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1638 SAMTools SNP 139343 139343 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1638 SAMTools SNP 151999 151999 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1639 SAMTools SNP 218 218 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1639 SAMTools SNP 394 394 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1639 SAMTools SNP 1310 1310 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1639 SAMTools SNP 1337 1337 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00021%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1639 SAMTools SNP 1347 1347 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C30%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0033%2C0.38%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1639 SAMTools SNP 3785 3785 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.29%2C1e-06%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1639 SAMTools SNP 73961 73961 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1639 SAMTools SNP 74067 74067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.1e-15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1639 SAMTools SNP 74139 74139 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1.4e-06%2C1%2C1%2C1.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C240:99 scaffold1639 SAMTools SNP 74188 74188 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.11%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1639 SAMTools SNP 74901 74901 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1639 SAMTools SNP 74957 74957 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1639 SAMTools SNP 75203 75203 12.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1639 SAMTools SNP 82920 82920 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1639 SAMTools SNP 83646 83646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 1120 1120 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 1142 1142 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 47478 47478 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C27:31 scaffold164 SAMTools SNP 48093 48093 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold164 SAMTools SNP 50690 50690 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 50801 50801 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold164 SAMTools SNP 51664 51664 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold164 SAMTools SNP 56092 56092 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.083%2C3.1e-05%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C176:37 scaffold164 SAMTools SNP 56206 56206 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.33%2C3.4e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold164 SAMTools SNP 57466 57466 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.56%3BPV4%3D1%2C8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C35:38 scaffold164 SAMTools SNP 60428 60428 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C3.7e-08%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C128:99 scaffold164 SAMTools SNP 66142 66142 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C15%2C0%3BMQ%3D45%3BFQ%3D167%3BPV4%3D0.11%2C0.092%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold164 SAMTools SNP 66145 66145 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C2%2C2%3BMQ%3D44%3BFQ%3D12.3%3BPV4%3D0.28%2C1%2C0.43%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold164 SAMTools SNP 66182 66182 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C1%2C8%3BMQ%3D46%3BFQ%3D23%3BPV4%3D1%2C0.37%2C0.00025%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold164 SAMTools SNP 66395 66395 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C3%3BMQ%3D29%3BFQ%3D43%3BPV4%3D0.62%2C0.42%2C0.24%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C99:73 scaffold164 SAMTools SNP 66811 66811 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C8%2C1%3BMQ%3D49%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C3.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold164 SAMTools SNP 66852 66852 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold164 SAMTools SNP 69374 69374 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C22%2C54%3BMQ%3D46%3BFQ%3D200%3BPV4%3D0.51%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold164 SAMTools SNP 69407 69407 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C0%2C7%3BMQ%3D42%3BFQ%3D53%3BPV4%3D9.6e-05%2C1%2C1%2C8.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold164 SAMTools SNP 69416 69416 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C22%2C0%3BMQ%3D41%3BFQ%3D210%3BPV4%3D0.0089%2C0.41%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold164 SAMTools SNP 69649 69649 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C3%2C10%3BMQ%3D24%3BFQ%3D98%3BPV4%3D0.079%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C128:99 scaffold164 SAMTools SNP 69682 69682 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C4%2C11%2C2%3BMQ%3D28%3BFQ%3D4.77%3BPV4%3D0.046%2C1%2C8.9e-05%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C152:28 scaffold164 SAMTools SNP 69733 69733 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D27%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C51%2C0:99 scaffold164 SAMTools SNP 71299 71299 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold164 SAMTools SNP 77546 77546 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C33%2C0:54 scaffold164 SAMTools SNP 138808 138808 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 138818 138818 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C246:99 scaffold164 SAMTools SNP 138862 138862 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C0%2C72%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.25%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 139020 139020 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D589%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C21%2C303%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C2.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 140182 140182 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1002%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C301%2C118%2C371%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-05%2C2e-273%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 144361 144361 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 144425 144425 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C17%2C23%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.012%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 145287 145287 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C265%2C0%2C107%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C6.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold164 SAMTools SNP 148715 148715 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold164 SAMTools SNP 148720 148720 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold164 SAMTools SNP 151679 151679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.034%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 153026 153026 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C24%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C254:99 scaffold164 SAMTools SNP 153050 153050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold164 SAMTools SNP 155302 155302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 155651 155651 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C59%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold164 SAMTools SNP 155657 155657 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C14%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D4.6e-06%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold164 SAMTools SNP 155669 155669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C45%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold164 SAMTools SNP 156010 156010 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C12%2C6%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.22%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold164 SAMTools SNP 156855 156855 66.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold164 SAMTools SNP 156931 156931 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold164 SAMTools SNP 158117 158117 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C8%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0008%2C5e-06%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold164 SAMTools SNP 158203 158203 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 159672 159672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C45%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 161935 161935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C93%2C0%2C176%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C9.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold164 SAMTools SNP 165614 165614 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold164 SAMTools SNP 165749 165749 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1071%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D380%2C202%2C24%2C191%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1.3e-45%2C0.0008%2C1%2C1.3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold164 SAMTools SNP 165767 165767 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1277%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D275%2C312%2C34%2C324%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 166167 166167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2161%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D764%2C399%2C460%2C321%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 166224 166224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1376%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C546%2C61%2C635%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-08%2C0.07%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 166904 166904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D848%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D358%2C86%2C214%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 168518 168518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3952%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3636%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 168587 168587 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6280%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1628%2C1788%2C1146%2C1414%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.028%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold164 SAMTools SNP 168988 168988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6921%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3445%2C1%2C3364%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 169456 169456 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold164 SAMTools SNP 169503 169503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold164 SAMTools SNP 175168 175168 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 178137 178137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold164 SAMTools SNP 178140 178140 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold164 SAMTools SNP 181161 181161 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 182619 182619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 183067 183067 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C9%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold164 SAMTools SNP 183605 183605 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 185014 185014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C34%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold164 SAMTools SNP 185184 185184 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C5.1e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C124:30 scaffold164 SAMTools SNP 193188 193188 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold164 SAMTools SNP 193224 193224 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold164 SAMTools SNP 205794 205794 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 208631 208631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 209561 209561 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.3%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold164 SAMTools SNP 209583 209583 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold164 SAMTools SNP 219245 219245 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold164 SAMTools SNP 219792 219792 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold164 SAMTools SNP 219807 219807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.26%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 219819 219819 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold164 SAMTools SNP 221886 221886 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold164 SAMTools SNP 221889 221889 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold164 SAMTools SNP 222780 222780 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.55%2C0.0013%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold164 SAMTools SNP 222781 222781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 222788 222788 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.25%2C1.6e-06%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold164 SAMTools SNP 224805 224805 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold164 SAMTools SNP 225049 225049 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold164 SAMTools SNP 225051 225051 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold164 SAMTools SNP 226460 226460 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C33%2C0:63 scaffold164 SAMTools SNP 229589 229589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold164 SAMTools SNP 229628 229628 95 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C27%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.47%2C1.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C236:99 scaffold164 SAMTools SNP 230091 230091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C30%2C57%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 230205 230205 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C55%2C44%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 231788 231788 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C99%2C0%2C332%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C9.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold164 SAMTools SNP 234531 234531 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold164 SAMTools SNP 236986 236986 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C233%2C12%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 237283 237283 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D504%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C272%2C204%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 239757 239757 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C0%2C26%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.3%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold164 SAMTools SNP 239776 239776 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 241427 241427 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C57%2C0:99 scaffold164 SAMTools SNP 247052 247052 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 247640 247640 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold164 SAMTools SNP 247657 247657 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold164 SAMTools SNP 248480 248480 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold164 SAMTools SNP 248522 248522 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold164 SAMTools SNP 251422 251422 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C90%2C1%2C24%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.3%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold164 SAMTools SNP 251423 251423 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C91%2C1%2C23%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.47%2C0.38%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold164 SAMTools SNP 251865 251865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold164 SAMTools SNP 251943 251943 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C105%2C0:99 scaffold164 SAMTools SNP 252436 252436 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold164 SAMTools SNP 252457 252457 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.66%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold164 SAMTools SNP 252927 252927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold164 SAMTools SNP 252957 252957 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 256255 256255 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 256265 256265 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold164 SAMTools SNP 256291 256291 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold164 SAMTools SNP 256306 256306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold164 SAMTools SNP 256643 256643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold164 SAMTools SNP 256681 256681 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.13%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C250:99 scaffold164 SAMTools SNP 256688 256688 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.047%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold164 SAMTools SNP 258923 258923 74.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold164 SAMTools SNP 258928 258928 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 297448 297448 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold164 SAMTools SNP 297472 297472 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.28%2C0.072%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold164 SAMTools SNP 297515 297515 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 300603 300603 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C12%2C135%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 301359 301359 10.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold164 SAMTools SNP 301631 301631 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.011%2C0.43%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C138:99 scaffold164 SAMTools SNP 301659 301659 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C48%2C166%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 301706 301706 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D888%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C112%2C337%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.23%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 302275 302275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D991%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D229%2C301%2C168%2C286%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 302359 302359 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D235%2C146%2C159%2C165%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 302371 302371 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D786%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C163%2C168%2C211%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 304494 304494 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold164 SAMTools SNP 306299 306299 47.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold164 SAMTools SNP 306459 306459 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C177%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 306481 306481 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C80%2C1%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1.3e-05%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 313753 313753 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.03%2C1%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold164 SAMTools SNP 315320 315320 7.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold164 SAMTools SNP 320000 320000 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold164 SAMTools SNP 322240 322240 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold164 SAMTools SNP 322373 322373 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold164 SAMTools SNP 326939 326939 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C19:22 scaffold164 SAMTools SNP 327408 327408 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 327474 327474 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00067%2C0.051%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 327723 327723 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C25%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 327744 327744 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D113%3BPV4%3D2.2e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold164 SAMTools SNP 327965 327965 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C73%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.081%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 328202 328202 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C21%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C209:99 scaffold164 SAMTools SNP 328225 328225 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.19%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C128:99 scaffold164 SAMTools SNP 328233 328233 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 332793 332793 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold164 SAMTools SNP 332815 332815 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold164 SAMTools SNP 333220 333220 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold164 SAMTools SNP 333367 333367 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold164 SAMTools SNP 335278 335278 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C0.15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C171:99 scaffold164 SAMTools SNP 336139 336139 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold164 SAMTools SNP 336982 336982 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold164 SAMTools SNP 337012 337012 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold164 SAMTools SNP 338862 338862 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold164 SAMTools SNP 339149 339149 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold164 SAMTools SNP 339161 339161 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold164 SAMTools SNP 341114 341114 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 341118 341118 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 341665 341665 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.2%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C87:68 scaffold164 SAMTools SNP 341678 341678 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C18%2C0:33 scaffold164 SAMTools SNP 341696 341696 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C173:66 scaffold164 SAMTools SNP 341711 341711 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold164 SAMTools SNP 342340 342340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold164 SAMTools SNP 342727 342727 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold164 SAMTools SNP 344357 344357 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold164 SAMTools SNP 344880 344880 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C148:99 scaffold164 SAMTools SNP 344883 344883 110 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C119%2C107%2C145%2C0%2C136:21 scaffold164 SAMTools SNP 344915 344915 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold164 SAMTools SNP 345440 345440 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold164 SAMTools SNP 345443 345443 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold164 SAMTools SNP 345668 345668 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.4%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold164 SAMTools SNP 345902 345902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold164 SAMTools SNP 345967 345967 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.099%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C63:66 scaffold164 SAMTools SNP 345980 345980 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold164 SAMTools SNP 346474 346474 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.42%2C0.028%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold164 SAMTools SNP 346781 346781 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold164 SAMTools SNP 346901 346901 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 346946 346946 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold164 SAMTools SNP 347232 347232 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold164 SAMTools SNP 349389 349389 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 349398 349398 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 351120 351120 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C88:55 scaffold164 SAMTools SNP 351239 351239 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C190:99 scaffold164 SAMTools SNP 352067 352067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold164 SAMTools SNP 353083 353083 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C240:53 scaffold164 SAMTools SNP 353503 353503 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold164 SAMTools SNP 354347 354347 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.091%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold164 SAMTools SNP 354383 354383 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.33%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold164 SAMTools SNP 355443 355443 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold164 SAMTools SNP 356146 356146 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold164 SAMTools SNP 356559 356559 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C42%2C0:81 scaffold164 SAMTools SNP 356857 356857 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold164 SAMTools SNP 357715 357715 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold164 SAMTools SNP 357737 357737 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold164 SAMTools SNP 358034 358034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold164 SAMTools SNP 358129 358129 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold164 SAMTools SNP 359885 359885 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.55%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C199:99 scaffold164 SAMTools SNP 359898 359898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold164 SAMTools SNP 376160 376160 7.34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D23%3BFQ%3D-26%3BPV4%3D1%2C0.45%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C1:5 scaffold164 SAMTools SNP 395160 395160 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold164 SAMTools SNP 395995 395995 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold164 SAMTools SNP 397790 397790 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold164 SAMTools SNP 397911 397911 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold164 SAMTools SNP 398032 398032 9.49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold164 SAMTools SNP 402087 402087 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold164 SAMTools SNP 402736 402736 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.24%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C231:99 scaffold164 SAMTools SNP 402755 402755 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.12%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold164 SAMTools SNP 402921 402921 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold164 SAMTools SNP 402930 402930 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold164 SAMTools SNP 403167 403167 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 418113 418113 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0016%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold164 SAMTools SNP 418227 418227 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold164 SAMTools SNP 418887 418887 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold164 SAMTools SNP 432939 432939 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold164 SAMTools SNP 433237 433237 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold164 SAMTools SNP 443734 443734 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C27:29 scaffold164 SAMTools SNP 460054 460054 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold164 SAMTools SNP 460069 460069 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold164 SAMTools SNP 461528 461528 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold164 SAMTools SNP 462215 462215 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 462235 462235 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 462270 462270 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold164 SAMTools SNP 463948 463948 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold164 SAMTools SNP 463975 463975 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold164 SAMTools SNP 463987 463987 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold164 SAMTools SNP 464044 464044 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold164 SAMTools SNP 464065 464065 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold164 SAMTools SNP 466289 466289 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold164 SAMTools SNP 466301 466301 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold164 SAMTools SNP 467963 467963 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 469818 469818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold164 SAMTools SNP 469840 469840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold164 SAMTools SNP 469899 469899 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold164 SAMTools SNP 471143 471143 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold164 SAMTools SNP 472894 472894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1883%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C108%2C1773%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 472927 472927 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C215%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 474431 474431 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C69%2C53%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.00019%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold164 SAMTools SNP 474461 474461 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C49%2C129%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00093%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 474512 474512 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1214%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D325%2C131%2C676%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 475645 475645 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1204%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D422%2C135%2C574%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-09%2C0.45%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 476465 476465 96.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C21%2C0:39 scaffold164 SAMTools SNP 478810 478810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold164 SAMTools SNP 479345 479345 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C39%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold164 SAMTools SNP 479365 479365 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C22%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold164 SAMTools SNP 479834 479834 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold164 SAMTools SNP 480206 480206 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold164 SAMTools SNP 480242 480242 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold164 SAMTools SNP 480404 480404 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold164 SAMTools SNP 480415 480415 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C91:39 scaffold164 SAMTools SNP 483362 483362 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold164 SAMTools SNP 484820 484820 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold164 SAMTools SNP 485103 485103 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold164 SAMTools SNP 488361 488361 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D872%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D536%2C12%2C245%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold164 SAMTools SNP 492880 492880 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold164 SAMTools SNP 493097 493097 54.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold164 SAMTools SNP 493753 493753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4637%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C2909%2C1669%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.56%2C1%2C0.48%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold164 SAMTools SNP 496413 496413 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4504%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3145%2C0%2C1334%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.00023%2C8.8e-306%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold164 SAMTools SNP 502991 502991 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.7e-09%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C241:43 scaffold164 SAMTools SNP 504643 504643 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold164 SAMTools SNP 505249 505249 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold164 SAMTools SNP 506641 506641 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C0.32%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold164 SAMTools SNP 513081 513081 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold164 SAMTools SNP 513911 513911 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold164 SAMTools SNP 515802 515802 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold164 SAMTools SNP 515814 515814 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.028%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold164 SAMTools SNP 515991 515991 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold164 SAMTools SNP 516468 516468 18.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold164 SAMTools SNP 517401 517401 59.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold164 SAMTools SNP 517566 517566 21.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold164 SAMTools SNP 542290 542290 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold164 SAMTools SNP 542450 542450 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 542453 542453 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold164 SAMTools SNP 593929 593929 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D42%3BFQ%3D51%3BPV4%3D0.43%2C0.32%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C78:81 scaffold164 SAMTools SNP 656299 656299 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.27%2C5.8e-30%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C185:47 scaffold164 SAMTools SNP 657661 657661 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold164 SAMTools SNP 666622 666622 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.42%2C2.8e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C188:34 scaffold164 SAMTools SNP 669521 669521 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold164 SAMTools SNP 672919 672919 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 673984 673984 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C175:74 scaffold164 SAMTools SNP 674046 674046 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold164 SAMTools SNP 675084 675084 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold164 SAMTools SNP 675213 675213 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold164 SAMTools SNP 676223 676223 88 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold164 SAMTools SNP 676266 676266 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold164 SAMTools SNP 677166 677166 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold164 SAMTools SNP 677235 677235 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold164 SAMTools SNP 677287 677287 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold164 SAMTools SNP 678655 678655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold164 SAMTools SNP 678683 678683 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold164 SAMTools SNP 683972 683972 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00069%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold164 SAMTools SNP 683995 683995 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold164 SAMTools SNP 684042 684042 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold164 SAMTools SNP 684914 684914 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold164 SAMTools SNP 711928 711928 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold164 SAMTools SNP 712755 712755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1641 SAMTools SNP 135 135 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D49%3BFQ%3D190%3BPV4%3D1%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C217:99 scaffold1641 SAMTools SNP 449 449 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C191:99 scaffold1641 SAMTools SNP 470 470 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C0%3BMQ%3D49%3BFQ%3D128%3BPV4%3D0.029%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1641 SAMTools SNP 1549 1549 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C5.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C231:69 scaffold1641 SAMTools SNP 1559 1559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1641 SAMTools SNP 1581 1581 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1641 SAMTools SNP 1582 1582 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 3032 3032 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 3451 3451 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1641 SAMTools SNP 6284 6284 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1641 SAMTools SNP 6628 6628 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1641 SAMTools SNP 9398 9398 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 9419 9419 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1641 SAMTools SNP 10190 10190 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1641 SAMTools SNP 10234 10234 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1641 SAMTools SNP 62414 62414 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D175%3BPV4%3D2.2e-07%2C0.00054%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1641 SAMTools SNP 79636 79636 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 81790 81790 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1641 SAMTools SNP 81924 81924 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C122:99 scaffold1641 SAMTools SNP 82830 82830 27.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1641 SAMTools SNP 82853 82853 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1641 SAMTools SNP 84956 84956 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1641 SAMTools SNP 94378 94378 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.47%2C0.05%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C238:99 scaffold1641 SAMTools SNP 94423 94423 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.28%2C9.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C230:59 scaffold1641 SAMTools SNP 94441 94441 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.29%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C228:99 scaffold1641 SAMTools SNP 94465 94465 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.29%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1641 SAMTools SNP 94504 94504 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.069%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1641 SAMTools SNP 96853 96853 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1641 SAMTools SNP 96926 96926 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1641 SAMTools SNP 98583 98583 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1641 SAMTools SNP 105421 105421 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C36%2C0:69 scaffold1641 SAMTools SNP 118022 118022 16.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.17%2C6.2e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C10%2C0:17 scaffold1641 SAMTools SNP 148521 148521 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 148610 148610 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1641 SAMTools SNP 158425 158425 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1641 SAMTools SNP 158804 158804 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 159598 159598 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.4%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1641 SAMTools SNP 160002 160002 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1641 SAMTools SNP 160046 160046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1641 SAMTools SNP 160563 160563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1641 SAMTools SNP 160583 160583 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1641 SAMTools SNP 160593 160593 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1641 SAMTools SNP 161280 161280 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1641 SAMTools SNP 161428 161428 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1641 SAMTools SNP 162870 162870 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 162895 162895 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.17%2C0.22%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1641 SAMTools SNP 163289 163289 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1641 SAMTools SNP 163561 163561 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1641 SAMTools SNP 163666 163666 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C5%2C55%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.72%2C9.4e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1641 SAMTools SNP 163699 163699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C26%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1641 SAMTools SNP 163861 163861 48.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold1641 SAMTools SNP 163976 163976 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold1641 SAMTools SNP 164029 164029 54.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1641 SAMTools SNP 164437 164437 21.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1641 SAMTools SNP 164669 164669 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1641 SAMTools SNP 164785 164785 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1641 SAMTools SNP 164908 164908 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1641 SAMTools SNP 165637 165637 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1641 SAMTools SNP 165730 165730 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1641 SAMTools SNP 165759 165759 93.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold1641 SAMTools SNP 166116 166116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1641 SAMTools SNP 166129 166129 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1641 SAMTools SNP 166564 166564 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1641 SAMTools SNP 166588 166588 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1641 SAMTools SNP 166827 166827 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1641 SAMTools SNP 166911 166911 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.6%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1641 SAMTools SNP 170432 170432 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 175211 175211 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 195133 195133 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1641 SAMTools SNP 201852 201852 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1641 SAMTools SNP 227229 227229 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 267725 267725 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 295328 295328 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1641 SAMTools SNP 306976 306976 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1641 SAMTools SNP 307140 307140 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C3.4e-11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C23:26 scaffold1641 SAMTools SNP 307720 307720 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D1%2C0.059%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C41:43 scaffold1643 SAMTools SNP 9608 9608 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C117%2C9%2C409%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1643 SAMTools SNP 10425 10425 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1643 SAMTools SNP 10870 10870 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 12868 12868 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1643 SAMTools SNP 20014 20014 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1643 SAMTools SNP 20031 20031 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1643 SAMTools SNP 20107 20107 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 21157 21157 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 21307 21307 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1643 SAMTools SNP 21782 21782 113 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C94%2C82%2C144%2C0%2C138:21 scaffold1643 SAMTools SNP 22848 22848 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 23394 23394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 23513 23513 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.45%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1643 SAMTools SNP 23934 23934 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1643 SAMTools SNP 23950 23950 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1643 SAMTools SNP 24963 24963 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1643 SAMTools SNP 24973 24973 120 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.37%2C0.47%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C104:99 scaffold1643 SAMTools SNP 25865 25865 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.24%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C254:99 scaffold1643 SAMTools SNP 26245 26245 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1643 SAMTools SNP 26634 26634 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1643 SAMTools SNP 26636 26636 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.044%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1643 SAMTools SNP 26986 26986 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1643 SAMTools SNP 27455 27455 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1643 SAMTools SNP 28443 28443 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1643 SAMTools SNP 28846 28846 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1643 SAMTools SNP 29851 29851 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1643 SAMTools SNP 29874 29874 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1643 SAMTools SNP 30262 30262 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1643 SAMTools SNP 31244 31244 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 31254 31254 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 32005 32005 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1643 SAMTools SNP 32031 32031 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1643 SAMTools SNP 33663 33663 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1643 SAMTools SNP 33672 33672 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1643 SAMTools SNP 93279 93279 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1643 SAMTools SNP 98168 98168 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.014%2C6.5e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1643 SAMTools SNP 98394 98394 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D41.7%3BPV4%3D1%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C80:72 scaffold1643 SAMTools SNP 105798 105798 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D-3.02%3BPV4%3D0.083%2C7.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C27:30 scaffold1643 SAMTools SNP 166591 166591 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 166601 166601 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 191274 191274 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 192482 192482 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1643 SAMTools SNP 194005 194005 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1643 SAMTools SNP 195265 195265 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1643 SAMTools SNP 195289 195289 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1643 SAMTools SNP 195329 195329 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.36%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C205:93 scaffold1643 SAMTools SNP 195715 195715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1643 SAMTools SNP 195871 195871 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1643 SAMTools SNP 195895 195895 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C109%2C0%2C32%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C0.032%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1643 SAMTools SNP 196899 196899 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C15%3BMQ%3D49%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C243:99 scaffold1643 SAMTools SNP 196902 196902 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C6%3BMQ%3D49%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C231:99 scaffold1643 SAMTools SNP 196929 196929 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C33%2C0:63 scaffold1643 SAMTools SNP 200663 200663 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.4%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C94:74 scaffold1644 SAMTools SNP 11804 11804 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1644 SAMTools SNP 11819 11819 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C235:89 scaffold1644 SAMTools SNP 12371 12371 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1644 SAMTools SNP 12377 12377 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1644 SAMTools SNP 12422 12422 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1644 SAMTools SNP 12963 12963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1644 SAMTools SNP 13258 13258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C61%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1644 SAMTools SNP 13342 13342 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C18%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.31%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1644 SAMTools SNP 14119 14119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C18%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.31%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1644 SAMTools SNP 14219 14219 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C14%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1644 SAMTools SNP 14940 14940 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1644 SAMTools SNP 15951 15951 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1644 SAMTools SNP 17289 17289 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1644 SAMTools SNP 23820 23820 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1644 SAMTools SNP 40784 40784 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1644 SAMTools SNP 41526 41526 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1644 SAMTools SNP 42200 42200 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C17%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C124:99 scaffold1644 SAMTools SNP 42232 42232 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.27%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1644 SAMTools SNP 65442 65442 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1644 SAMTools SNP 65449 65449 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1644 SAMTools SNP 66227 66227 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1644 SAMTools SNP 93298 93298 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1644 SAMTools SNP 94083 94083 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1645 SAMTools SNP 935 935 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1645 SAMTools SNP 995 995 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1645 SAMTools SNP 8180 8180 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1645 SAMTools SNP 8240 8240 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1645 SAMTools SNP 8292 8292 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1645 SAMTools SNP 8740 8740 53.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold1645 SAMTools SNP 8916 8916 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold1645 SAMTools SNP 8975 8975 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C39%2C0:75 scaffold1645 SAMTools SNP 8976 8976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1645 SAMTools SNP 9309 9309 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C8%2C26%3BMQ%3D38%3BFQ%3D208%3BPV4%3D0.5%2C0.33%2C1.3e-09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1645 SAMTools SNP 9344 9344 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C3%2C12%2C26%3BMQ%3D44%3BFQ%3D193%3BPV4%3D1.5e-13%2C1%2C9.2e-21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1645 SAMTools SNP 9422 9422 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.054%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold1645 SAMTools SNP 9432 9432 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D42%3BFQ%3D51%3BPV4%3D0.43%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C78:81 scaffold1645 SAMTools SNP 12319 12319 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1645 SAMTools SNP 12322 12322 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1645 SAMTools SNP 16790 16790 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D22%3BFQ%3D-30%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1645 SAMTools SNP 16812 16812 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1645 SAMTools SNP 17838 17838 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D24%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold1645 SAMTools SNP 21289 21289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C5%2C65%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 22486 22486 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1645 SAMTools SNP 28003 28003 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1645 SAMTools SNP 55107 55107 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D43%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1645 SAMTools SNP 56838 56838 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C135%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C255%2C0:99 scaffold1645 SAMTools SNP 58567 58567 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C39%2C17%2C142%3BMQ%3D14%3BFQ%3D-144%3BPV4%3D0.77%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C117%2C0:99 scaffold1645 SAMTools SNP 58874 58874 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D5.95%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C43:31 scaffold1645 SAMTools SNP 58978 58978 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1645 SAMTools SNP 60340 60340 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold1645 SAMTools SNP 60449 60449 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C21%2C0:39 scaffold1645 SAMTools SNP 60505 60505 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1645 SAMTools SNP 63050 63050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1645 SAMTools SNP 63079 63079 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C6%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.2e-10%2C0.37%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 64243 64243 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C77%2C26%3BMQ%3D50%3BFQ%3D-269%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C242%2C0:99 scaffold1645 SAMTools SNP 64261 64261 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C62%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0039%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 64303 64303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C80%2C29%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 64309 64309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C53%2C44%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 64810 64810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1645 SAMTools SNP 64822 64822 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 65299 65299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C14%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 65787 65787 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C11%2C74%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 65805 65805 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C305%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1645 SAMTools SNP 65899 65899 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C152%2C71%2C149%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 65990 65990 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1645 SAMTools SNP 66079 66079 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C23%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C2.7e-16%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 66438 66438 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C42%2C19%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 66985 66985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C18%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 67082 67082 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1645 SAMTools SNP 67599 67599 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C128%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1645 SAMTools SNP 67652 67652 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C52%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1645 SAMTools SNP 69288 69288 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C65%2C6%2C75%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0018%2C2.4e-121%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1645 SAMTools SNP 69369 69369 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C132%2C0:99 scaffold1645 SAMTools SNP 69398 69398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1645 SAMTools SNP 69460 69460 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1645 SAMTools SNP 69708 69708 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.022%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1645 SAMTools SNP 70110 70110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C0.13%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 70122 70122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1645 SAMTools SNP 70176 70176 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.62%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1645 SAMTools SNP 70730 70730 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1646 SAMTools SNP 2210 2210 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1646 SAMTools SNP 12323 12323 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1646 SAMTools SNP 12335 12335 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1646 SAMTools SNP 19080 19080 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1646 SAMTools SNP 36277 36277 56.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold1646 SAMTools SNP 44934 44934 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C0%2C84%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1e-129%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1646 SAMTools SNP 44982 44982 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C39%2C0:75 scaffold1646 SAMTools SNP 45020 45020 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C0%2C47%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.49%2C8.6e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1646 SAMTools SNP 46790 46790 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C87%2C0:99 scaffold1646 SAMTools SNP 47072 47072 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C169%2C0:99 scaffold1646 SAMTools SNP 47618 47618 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.7%2C2.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1646 SAMTools SNP 49824 49824 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1646 SAMTools SNP 49825 49825 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1646 SAMTools SNP 49845 49845 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1646 SAMTools SNP 78273 78273 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1646 SAMTools SNP 98503 98503 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D39%3BFQ%3D-6.19%3BPV4%3D0.4%2C0.14%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C22:25 scaffold1646 SAMTools SNP 158881 158881 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1647 SAMTools SNP 45 45 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1647 SAMTools SNP 149 149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1647 SAMTools SNP 185 185 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1647 SAMTools SNP 1471 1471 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C178:99 scaffold1647 SAMTools SNP 1492 1492 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.32%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C158:89 scaffold1647 SAMTools SNP 154729 154729 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 6771 6771 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 17678 17678 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D4.93%3BPV4%3D0.17%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C32:33 scaffold165 SAMTools SNP 17684 17684 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold165 SAMTools SNP 24766 24766 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold165 SAMTools SNP 25037 25037 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold165 SAMTools SNP 25046 25046 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold165 SAMTools SNP 25903 25903 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold165 SAMTools SNP 25928 25928 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold165 SAMTools SNP 27219 27219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold165 SAMTools SNP 27275 27275 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold165 SAMTools SNP 27726 27726 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold165 SAMTools SNP 28816 28816 11.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold165 SAMTools SNP 29247 29247 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold165 SAMTools SNP 29297 29297 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold165 SAMTools SNP 29328 29328 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold165 SAMTools SNP 33317 33317 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold165 SAMTools SNP 123461 123461 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C13%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.78%2C7.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold165 SAMTools SNP 123596 123596 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C238:39 scaffold165 SAMTools SNP 127404 127404 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C110:99 scaffold165 SAMTools SNP 127559 127559 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C42%2C0:81 scaffold165 SAMTools SNP 127602 127602 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold165 SAMTools SNP 128426 128426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold165 SAMTools SNP 128438 128438 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 128906 128906 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold165 SAMTools SNP 131024 131024 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold165 SAMTools SNP 131903 131903 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 132298 132298 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 132319 132319 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 132344 132344 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 132350 132350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 133049 133049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 133167 133167 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 137842 137842 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 137884 137884 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold165 SAMTools SNP 139087 139087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold165 SAMTools SNP 139288 139288 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold165 SAMTools SNP 139459 139459 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold165 SAMTools SNP 139807 139807 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold165 SAMTools SNP 139817 139817 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold165 SAMTools SNP 140573 140573 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold165 SAMTools SNP 140586 140586 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold165 SAMTools SNP 140802 140802 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold165 SAMTools SNP 140906 140906 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C15%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.3%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C69:72 scaffold165 SAMTools SNP 141557 141557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold165 SAMTools SNP 141581 141581 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold165 SAMTools SNP 141583 141583 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 141630 141630 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold165 SAMTools SNP 141674 141674 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold165 SAMTools SNP 143808 143808 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C3.6e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold165 SAMTools SNP 145659 145659 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D77.9%3BPV4%3D1%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C107:99 scaffold165 SAMTools SNP 146874 146874 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold165 SAMTools SNP 147527 147527 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold165 SAMTools SNP 150035 150035 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C213:71 scaffold165 SAMTools SNP 150118 150118 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.47%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C154:28 scaffold165 SAMTools SNP 150663 150663 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold165 SAMTools SNP 151078 151078 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold165 SAMTools SNP 170725 170725 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 170726 170726 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 175089 175089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold165 SAMTools SNP 175170 175170 79 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C102%2C0%2C109%2C84%2C106:99 scaffold165 SAMTools SNP 175236 175236 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold165 SAMTools SNP 175303 175303 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold165 SAMTools SNP 180110 180110 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold165 SAMTools SNP 180141 180141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold165 SAMTools SNP 180657 180657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold165 SAMTools SNP 180702 180702 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C24%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold165 SAMTools SNP 180945 180945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C22%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold165 SAMTools SNP 181348 181348 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold165 SAMTools SNP 181351 181351 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 181552 181552 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold165 SAMTools SNP 181564 181564 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C17%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.055%2C1%2C1%2C3.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold165 SAMTools SNP 181971 181971 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C68%2C25%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 182878 182878 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C2%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold165 SAMTools SNP 183010 183010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 183557 183557 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C78%2C1%2C21%3BMQ%3D35%3BFQ%3D134%3BPV4%3D0.45%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold165 SAMTools SNP 183575 183575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C69%3BMQ%3D20%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold165 SAMTools SNP 183987 183987 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C0.0057%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold165 SAMTools SNP 184569 184569 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0051%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold165 SAMTools SNP 184860 184860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C14%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.11%2C0.11%2C0.069%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 185260 185260 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C6%2C38%2C12%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.038%2C0.38%2C3.3e-08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 185372 185372 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C59%2C10%2C36%3BMQ%3D48%3BFQ%3D62%3BPV4%3D0.00078%2C6e-42%2C8.5e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold165 SAMTools SNP 186366 186366 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C64%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C80:83 scaffold165 SAMTools SNP 186429 186429 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 186489 186489 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold165 SAMTools SNP 195500 195500 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C178%2C1%2C40%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.46%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold165 SAMTools SNP 195509 195509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C218%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold165 SAMTools SNP 195545 195545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold165 SAMTools SNP 196249 196249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold165 SAMTools SNP 196261 196261 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold165 SAMTools SNP 197109 197109 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.73%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold165 SAMTools SNP 197115 197115 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold165 SAMTools SNP 197185 197185 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.6%2C0.32%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold165 SAMTools SNP 197723 197723 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold165 SAMTools SNP 198589 198589 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold165 SAMTools SNP 199851 199851 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold165 SAMTools SNP 199863 199863 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold165 SAMTools SNP 199903 199903 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold165 SAMTools SNP 199927 199927 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold165 SAMTools SNP 200441 200441 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold165 SAMTools SNP 200806 200806 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-3.56%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C26:29 scaffold165 SAMTools SNP 205228 205228 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold165 SAMTools SNP 205686 205686 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold165 SAMTools SNP 205687 205687 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold165 SAMTools SNP 205700 205700 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold165 SAMTools SNP 205823 205823 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold165 SAMTools SNP 206498 206498 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C127:40 scaffold165 SAMTools SNP 206850 206850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 210621 210621 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.17%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold165 SAMTools SNP 210671 210671 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.021%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold165 SAMTools SNP 210718 210718 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C241:99 scaffold165 SAMTools SNP 211045 211045 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold165 SAMTools SNP 211138 211138 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold165 SAMTools SNP 216798 216798 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold165 SAMTools SNP 216808 216808 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C152:99 scaffold165 SAMTools SNP 217151 217151 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 217454 217454 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 217562 217562 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 219187 219187 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 219287 219287 4.45 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C34%2C22%2C30%2C0%2C27:11 scaffold165 SAMTools SNP 219936 219936 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 222954 222954 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 225632 225632 69.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold165 SAMTools SNP 225662 225662 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C8%2C9%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.36%2C1.7e-19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold165 SAMTools SNP 227381 227381 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold165 SAMTools SNP 229317 229317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C12%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.65%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold165 SAMTools SNP 229338 229338 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C11%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.014%2C8.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold165 SAMTools SNP 229458 229458 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0058%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold165 SAMTools SNP 229533 229533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold165 SAMTools SNP 229766 229766 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold165 SAMTools SNP 229776 229776 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold165 SAMTools SNP 229802 229802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold165 SAMTools SNP 230079 230079 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C0.073%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold165 SAMTools SNP 230104 230104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold165 SAMTools SNP 231510 231510 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold165 SAMTools SNP 232724 232724 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold165 SAMTools SNP 232829 232829 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold165 SAMTools SNP 237050 237050 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold165 SAMTools SNP 237385 237385 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C45%2C0:87 scaffold165 SAMTools SNP 237856 237856 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold165 SAMTools SNP 239137 239137 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold165 SAMTools SNP 239260 239260 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold165 SAMTools SNP 239720 239720 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold165 SAMTools SNP 239745 239745 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.51%2C0.078%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C244:99 scaffold165 SAMTools SNP 240052 240052 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.022%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold165 SAMTools SNP 241985 241985 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold165 SAMTools SNP 242340 242340 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 242343 242343 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold165 SAMTools SNP 242382 242382 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold165 SAMTools SNP 245366 245366 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 245371 245371 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C36%2C0:69 scaffold165 SAMTools SNP 245592 245592 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 246617 246617 75.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold165 SAMTools SNP 249497 249497 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold165 SAMTools SNP 249517 249517 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold165 SAMTools SNP 249560 249560 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C13%2C10%2C47%2C0%2C44:6 scaffold165 SAMTools SNP 267480 267480 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold165 SAMTools SNP 267833 267833 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C94:97 scaffold165 SAMTools SNP 268101 268101 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold165 SAMTools SNP 294300 294300 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 309180 309180 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold165 SAMTools SNP 309479 309479 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold165 SAMTools SNP 309480 309480 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold165 SAMTools SNP 309799 309799 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold165 SAMTools SNP 310221 310221 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold165 SAMTools SNP 310252 310252 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold165 SAMTools SNP 310267 310267 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold165 SAMTools SNP 342102 342102 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 343338 343338 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 372391 372391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold165 SAMTools SNP 373179 373179 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold165 SAMTools SNP 374185 374185 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold165 SAMTools SNP 375643 375643 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold165 SAMTools SNP 375683 375683 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold165 SAMTools SNP 379304 379304 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold165 SAMTools SNP 379325 379325 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold165 SAMTools SNP 387378 387378 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.24%2C0.43%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold165 SAMTools SNP 392387 392387 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold165 SAMTools SNP 392659 392659 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.33%2C0.5%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold165 SAMTools SNP 393638 393638 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold165 SAMTools SNP 397078 397078 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold165 SAMTools SNP 397090 397090 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold165 SAMTools SNP 397102 397102 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold165 SAMTools SNP 401501 401501 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold165 SAMTools SNP 405161 405161 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.12%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold165 SAMTools SNP 405570 405570 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold165 SAMTools SNP 406286 406286 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.043%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold165 SAMTools SNP 406289 406289 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.043%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold165 SAMTools SNP 406349 406349 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C16%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold165 SAMTools SNP 407895 407895 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C23%2C33%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold165 SAMTools SNP 407982 407982 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C24%2C20%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 408244 408244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C69%2C14%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00096%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold165 SAMTools SNP 408512 408512 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C0%2C17%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1650 SAMTools SNP 3568 3568 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C163%2C19%2C90%3BMQ%3D41%3BFQ%3D142%3BPV4%3D0.55%2C1%2C0.041%2C3e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1650 SAMTools SNP 5469 5469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C35%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1.1e-16%2C1%2C0.17%2C1.4e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1650 SAMTools SNP 5499 5499 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D965%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D311%2C405%2C146%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 5541 5541 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D963%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C352%2C607%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1650 SAMTools SNP 20374 20374 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1650 SAMTools SNP 22539 22539 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1650 SAMTools SNP 38808 38808 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1650 SAMTools SNP 54319 54319 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 54334 54334 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold1650 SAMTools SNP 57280 57280 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1650 SAMTools SNP 60473 60473 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C38%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1650 SAMTools SNP 60867 60867 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0039%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1650 SAMTools SNP 61228 61228 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00033%2C0.0022%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C159:99 scaffold1650 SAMTools SNP 61235 61235 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold1650 SAMTools SNP 62034 62034 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C60%2C0:99 scaffold1650 SAMTools SNP 62105 62105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.6%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1650 SAMTools SNP 62445 62445 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1650 SAMTools SNP 62807 62807 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.26%2C0.018%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1650 SAMTools SNP 62859 62859 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1650 SAMTools SNP 64123 64123 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.004%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold1650 SAMTools SNP 64173 64173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C14%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1650 SAMTools SNP 64209 64209 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C24%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1650 SAMTools SNP 64726 64726 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1650 SAMTools SNP 65066 65066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1650 SAMTools SNP 65732 65732 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1650 SAMTools SNP 65973 65973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 66026 66026 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.4e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 68350 68350 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1650 SAMTools SNP 68371 68371 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1650 SAMTools SNP 68687 68687 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 69456 69456 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1650 SAMTools SNP 70157 70157 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1650 SAMTools SNP 104060 104060 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1650 SAMTools SNP 104149 104149 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.36%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1650 SAMTools SNP 104192 104192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1650 SAMTools SNP 105001 105001 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1650 SAMTools SNP 105382 105382 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 105612 105612 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C236:99 scaffold1650 SAMTools SNP 105660 105660 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 105693 105693 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 106057 106057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 106967 106967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 108119 108119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1650 SAMTools SNP 108167 108167 164 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.62%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1650 SAMTools SNP 108363 108363 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.013%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1650 SAMTools SNP 109916 109916 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1650 SAMTools SNP 109954 109954 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 110009 110009 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 110042 110042 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1650 SAMTools SNP 111465 111465 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.046%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C221:99 scaffold1650 SAMTools SNP 112146 112146 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1650 SAMTools SNP 115185 115185 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.6%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1650 SAMTools SNP 115613 115613 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1650 SAMTools SNP 118265 118265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold1650 SAMTools SNP 118537 118537 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C254:99 scaffold1650 SAMTools SNP 128914 128914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 130817 130817 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 130821 130821 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 135492 135492 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.38%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1650 SAMTools SNP 136010 136010 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C160:99 scaffold1650 SAMTools SNP 136881 136881 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1650 SAMTools SNP 139901 139901 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 139943 139943 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold1650 SAMTools SNP 141887 141887 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 141914 141914 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C51%2C0:99 scaffold1650 SAMTools SNP 142609 142609 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 143278 143278 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 145864 145864 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C178:77 scaffold1650 SAMTools SNP 146168 146168 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1650 SAMTools SNP 146201 146201 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1650 SAMTools SNP 146876 146876 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.48%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1650 SAMTools SNP 147411 147411 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1650 SAMTools SNP 150605 150605 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C12%2C29%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 150644 150644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1650 SAMTools SNP 150657 150657 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C26%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.37%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 151480 151480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C27%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1650 SAMTools SNP 155411 155411 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1650 SAMTools SNP 155797 155797 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.31%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C250:99 scaffold1650 SAMTools SNP 158746 158746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C465%2C50%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.46%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1650 SAMTools SNP 160222 160222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 160898 160898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C61%2C0%2C90%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.41%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 161127 161127 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C10%3BMQ%3D49%3BFQ%3D48%3BPV4%3D1%2C1%2C0.0013%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1650 SAMTools SNP 161148 161148 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1650 SAMTools SNP 161532 161532 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C6.3e-06%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1650 SAMTools SNP 162043 162043 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C8.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold1650 SAMTools SNP 162096 162096 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C9%2C6%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.69%2C5.4e-33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C253:95 scaffold1650 SAMTools SNP 164223 164223 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C87%2C0:99 scaffold1650 SAMTools SNP 164868 164868 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1650 SAMTools SNP 164917 164917 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C77%2C6%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1650 SAMTools SNP 164936 164936 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C106%2C52%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-05%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 165089 165089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C80%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1650 SAMTools SNP 167739 167739 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1650 SAMTools SNP 185114 185114 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C15%2C0:27 scaffold1650 SAMTools SNP 185155 185155 74.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1650 SAMTools SNP 185715 185715 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1650 SAMTools SNP 185814 185814 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1650 SAMTools SNP 185859 185859 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C5.4e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C136:64 scaffold1650 SAMTools SNP 186412 186412 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1650 SAMTools SNP 186436 186436 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 186986 186986 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C180:99 scaffold1650 SAMTools SNP 187022 187022 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.35%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1650 SAMTools SNP 187028 187028 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1650 SAMTools SNP 187103 187103 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1650 SAMTools SNP 187127 187127 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.25%2C0.13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1650 SAMTools SNP 187582 187582 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1650 SAMTools SNP 187607 187607 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1650 SAMTools SNP 191265 191265 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1650 SAMTools SNP 191316 191316 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 191322 191322 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1650 SAMTools SNP 195517 195517 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1650 SAMTools SNP 195565 195565 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1650 SAMTools SNP 195736 195736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C26%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1650 SAMTools SNP 201461 201461 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1650 SAMTools SNP 202353 202353 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.3e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1650 SAMTools SNP 202371 202371 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C15%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C227:99 scaffold1650 SAMTools SNP 202952 202952 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 204352 204352 222 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0%2C251%2C21%2C248:99 scaffold1650 SAMTools SNP 204394 204394 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 206488 206488 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 206524 206524 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 210113 210113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1650 SAMTools SNP 210125 210125 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1650 SAMTools SNP 210645 210645 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.52%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C178:65 scaffold1650 SAMTools SNP 210722 210722 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1650 SAMTools SNP 212289 212289 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1650 SAMTools SNP 212318 212318 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1650 SAMTools SNP 212333 212333 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1650 SAMTools SNP 212355 212355 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1650 SAMTools SNP 215152 215152 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1650 SAMTools SNP 215170 215170 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1650 SAMTools SNP 215464 215464 48.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold1650 SAMTools SNP 215516 215516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 218814 218814 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1650 SAMTools SNP 219513 219513 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1650 SAMTools SNP 219516 219516 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 219519 219519 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 221109 221109 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 221232 221232 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0:57 scaffold1650 SAMTools SNP 222440 222440 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1650 SAMTools SNP 222459 222459 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1650 SAMTools SNP 229596 229596 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1650 SAMTools SNP 230191 230191 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C47%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1650 SAMTools SNP 230848 230848 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.041%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C66:69 scaffold1650 SAMTools SNP 230857 230857 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1650 SAMTools SNP 231908 231908 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1650 SAMTools SNP 231944 231944 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 232055 232055 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1650 SAMTools SNP 235761 235761 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1650 SAMTools SNP 235771 235771 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1650 SAMTools SNP 235849 235849 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1650 SAMTools SNP 241198 241198 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 241210 241210 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1650 SAMTools SNP 241890 241890 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1650 SAMTools SNP 241925 241925 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1650 SAMTools SNP 242708 242708 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1650 SAMTools SNP 257013 257013 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1650 SAMTools SNP 257361 257361 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1650 SAMTools SNP 257648 257648 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D20.8%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C60:51 scaffold1650 SAMTools SNP 257964 257964 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1650 SAMTools SNP 258576 258576 113 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C60%2C0:99 scaffold1650 SAMTools SNP 260495 260495 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1650 SAMTools SNP 260811 260811 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold1650 SAMTools SNP 261057 261057 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.49%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C240:67 scaffold1650 SAMTools SNP 262211 262211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1650 SAMTools SNP 264715 264715 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1650 SAMTools SNP 265055 265055 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1650 SAMTools SNP 265588 265588 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1650 SAMTools SNP 265942 265942 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C3.5e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C163:50 scaffold1650 SAMTools SNP 267580 267580 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C9%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.6%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C186:53 scaffold1650 SAMTools SNP 269859 269859 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1650 SAMTools SNP 270343 270343 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.26%2C1e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1650 SAMTools SNP 271312 271312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1650 SAMTools SNP 271751 271751 44.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1650 SAMTools SNP 272485 272485 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 273660 273660 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1650 SAMTools SNP 273750 273750 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.33%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1650 SAMTools SNP 273756 273756 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1650 SAMTools SNP 277269 277269 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1650 SAMTools SNP 278580 278580 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1650 SAMTools SNP 288248 288248 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold1650 SAMTools SNP 288263 288263 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.33%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1650 SAMTools SNP 288549 288549 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C14%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1650 SAMTools SNP 314351 314351 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1650 SAMTools SNP 323629 323629 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1650 SAMTools SNP 323869 323869 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1650 SAMTools SNP 323914 323914 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 324674 324674 13.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1650 SAMTools SNP 330392 330392 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1650 SAMTools SNP 330474 330474 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 331230 331230 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1650 SAMTools SNP 335667 335667 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1650 SAMTools SNP 343765 343765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1650 SAMTools SNP 346080 346080 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C17%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C249:99 scaffold1650 SAMTools SNP 348636 348636 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C23%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1650 SAMTools SNP 348714 348714 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C36%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1650 SAMTools SNP 349554 349554 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C9%2C3%2C103%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold1650 SAMTools SNP 349852 349852 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0052%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.24%2C0.2%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1650 SAMTools SNP 352130 352130 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C29%2C10%3BMQ%3D47%3BFQ%3D-88%3BPV4%3D0.08%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold1650 SAMTools SNP 352408 352408 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 362854 362854 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1650 SAMTools SNP 362866 362866 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 364088 364088 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C0%3BMQ%3D39%3BFQ%3D13.2%3BPV4%3D0.001%2C2.4e-06%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C196:42 scaffold1650 SAMTools SNP 364101 364101 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C7%3BMQ%3D36%3BFQ%3D52%3BPV4%3D1%2C0.27%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C170:82 scaffold1650 SAMTools SNP 364353 364353 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D0.44%2C1%2C0.062%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C102:40 scaffold1650 SAMTools SNP 364423 364423 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1650 SAMTools SNP 375512 375512 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.29%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1650 SAMTools SNP 377249 377249 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1650 SAMTools SNP 377277 377277 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 378105 378105 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1650 SAMTools SNP 378165 378165 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1650 SAMTools SNP 378878 378878 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 378887 378887 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 379148 379148 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1650 SAMTools SNP 379291 379291 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1650 SAMTools SNP 379302 379302 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold1650 SAMTools SNP 379745 379745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 379755 379755 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 380012 380012 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1650 SAMTools SNP 380051 380051 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1650 SAMTools SNP 381145 381145 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 381149 381149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 381934 381934 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1650 SAMTools SNP 382177 382177 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1650 SAMTools SNP 383671 383671 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0091%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1650 SAMTools SNP 383677 383677 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.44%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1650 SAMTools SNP 384737 384737 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1650 SAMTools SNP 384791 384791 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C214:99 scaffold1650 SAMTools SNP 384797 384797 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1650 SAMTools SNP 384983 384983 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.00028%2C0.019%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1650 SAMTools SNP 385007 385007 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.066%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1650 SAMTools SNP 388072 388072 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 388100 388100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C21%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1650 SAMTools SNP 388208 388208 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C111:99 scaffold1650 SAMTools SNP 391920 391920 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1650 SAMTools SNP 401046 401046 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1650 SAMTools SNP 402380 402380 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1650 SAMTools SNP 402426 402426 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1650 SAMTools SNP 402587 402587 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1650 SAMTools SNP 404081 404081 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1650 SAMTools SNP 406589 406589 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C1%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1650 SAMTools SNP 406611 406611 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.3%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1650 SAMTools SNP 406612 406612 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.3%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1650 SAMTools SNP 406642 406642 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C3%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.35%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1650 SAMTools SNP 408019 408019 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1650 SAMTools SNP 408024 408024 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.027%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold1650 SAMTools SNP 408095 408095 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1650 SAMTools SNP 408169 408169 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1650 SAMTools SNP 408238 408238 9.93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold1650 SAMTools SNP 408324 408324 7.34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0153%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D23%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C1:5 scaffold1650 SAMTools SNP 408732 408732 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C2%3BMQ%3D48%3BFQ%3D158%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1650 SAMTools SNP 415186 415186 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1650 SAMTools SNP 416391 416391 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C70:73 scaffold1650 SAMTools SNP 416439 416439 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1650 SAMTools SNP 457498 457498 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 459573 459573 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.12%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C76:79 scaffold1650 SAMTools SNP 459594 459594 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold1650 SAMTools SNP 459830 459830 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C24%2C0:45 scaffold1650 SAMTools SNP 459920 459920 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1650 SAMTools SNP 462242 462242 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1650 SAMTools SNP 462284 462284 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1650 SAMTools SNP 465615 465615 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold1650 SAMTools SNP 465630 465630 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1650 SAMTools SNP 465684 465684 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold1650 SAMTools SNP 466513 466513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1650 SAMTools SNP 466555 466555 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.48%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1650 SAMTools SNP 466597 466597 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C185:69 scaffold1650 SAMTools SNP 467911 467911 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1650 SAMTools SNP 471663 471663 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1650 SAMTools SNP 471698 471698 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C4%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.17%2C0.019%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1650 SAMTools SNP 484873 484873 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1650 SAMTools SNP 508169 508169 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.41%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C214:99 scaffold1650 SAMTools SNP 509441 509441 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1651 SAMTools SNP 3652 3652 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1651 SAMTools SNP 3674 3674 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1651 SAMTools SNP 3695 3695 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1651 SAMTools SNP 3707 3707 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1651 SAMTools SNP 5791 5791 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1651 SAMTools SNP 54212 54212 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1651 SAMTools SNP 54213 54213 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1651 SAMTools SNP 54314 54314 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1651 SAMTools SNP 56767 56767 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1651 SAMTools SNP 97776 97776 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D3%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C90%2C0:63 scaffold1651 SAMTools SNP 98895 98895 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1651 SAMTools SNP 99156 99156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1651 SAMTools SNP 99204 99204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1651 SAMTools SNP 99248 99248 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C4%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 99548 99548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C14%2C57%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 99602 99602 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C180%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1651 SAMTools SNP 100725 100725 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1651 SAMTools SNP 101134 101134 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold1651 SAMTools SNP 103670 103670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1651 SAMTools SNP 103685 103685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1651 SAMTools SNP 103739 103739 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 103919 103919 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C36%2C23%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 104659 104659 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1651 SAMTools SNP 104713 104713 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C22%2C17%2C17%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.09%2C3.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1651 SAMTools SNP 104969 104969 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C185:99 scaffold1651 SAMTools SNP 105219 105219 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1651 SAMTools SNP 105575 105575 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 105626 105626 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1651 SAMTools SNP 106256 106256 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1651 SAMTools SNP 107851 107851 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.085%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 108325 108325 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1651 SAMTools SNP 108355 108355 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C1%2C15%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0012%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1651 SAMTools SNP 108364 108364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1651 SAMTools SNP 108463 108463 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C26%2C42%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.019%2C4.4e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1651 SAMTools SNP 108535 108535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C52%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 109104 109104 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C7%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.57%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1651 SAMTools SNP 109115 109115 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1651 SAMTools SNP 109118 109118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C21%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0017%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1651 SAMTools SNP 109256 109256 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C10%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0021%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1651 SAMTools SNP 109304 109304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1651 SAMTools SNP 109789 109789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 110527 110527 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.2%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1651 SAMTools SNP 110748 110748 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1651 SAMTools SNP 110874 110874 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C84%2C0:99 scaffold1651 SAMTools SNP 111386 111386 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold1651 SAMTools SNP 112371 112371 26.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1651 SAMTools SNP 126017 126017 17.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C33%2C47%2C0%2C44:6 scaffold1651 SAMTools SNP 126144 126144 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 467 467 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C17%2C47%2C12%3BMQ%3D32%3BFQ%3D-64%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1652 SAMTools SNP 881 881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C16%3BMQ%3D37%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1652 SAMTools SNP 914 914 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1652 SAMTools SNP 4470 4470 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1652 SAMTools SNP 4915 4915 57.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold1652 SAMTools SNP 5102 5102 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C30%2C0:57 scaffold1652 SAMTools SNP 8033 8033 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1652 SAMTools SNP 8057 8057 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1652 SAMTools SNP 9612 9612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1652 SAMTools SNP 10215 10215 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C91%2C29%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.11%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 10599 10599 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C45%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold1652 SAMTools SNP 10700 10700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C57%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1652 SAMTools SNP 11315 11315 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1652 SAMTools SNP 13906 13906 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C91:41 scaffold1652 SAMTools SNP 14976 14976 40.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1652 SAMTools SNP 16322 16322 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C90%2C0:99 scaffold1652 SAMTools SNP 16887 16887 35.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1652 SAMTools SNP 17746 17746 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.21%2C3.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1652 SAMTools SNP 17904 17904 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.021%2C6.4e-33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C243:93 scaffold1652 SAMTools SNP 18744 18744 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1652 SAMTools SNP 20945 20945 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1652 SAMTools SNP 25882 25882 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 26965 26965 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold1652 SAMTools SNP 27107 27107 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1652 SAMTools SNP 27125 27125 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1652 SAMTools SNP 31166 31166 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1652 SAMTools SNP 31202 31202 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.25%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C236:99 scaffold1652 SAMTools SNP 31786 31786 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1652 SAMTools SNP 33753 33753 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1652 SAMTools SNP 34629 34629 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1652 SAMTools SNP 34746 34746 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1652 SAMTools SNP 34752 34752 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1652 SAMTools SNP 35407 35407 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C111:80 scaffold1652 SAMTools SNP 35428 35428 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1652 SAMTools SNP 35488 35488 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.1e-11%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C180:78 scaffold1652 SAMTools SNP 36500 36500 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 36524 36524 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 37162 37162 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 37251 37251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 37260 37260 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 39442 39442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 39463 39463 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C33%2C0:63 scaffold1652 SAMTools SNP 40277 40277 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C190:99 scaffold1652 SAMTools SNP 40286 40286 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C0.15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C175:99 scaffold1652 SAMTools SNP 40512 40512 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1652 SAMTools SNP 40837 40837 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.048%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold1652 SAMTools SNP 41060 41060 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C10%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.00062%2C0.39%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1652 SAMTools SNP 41155 41155 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1652 SAMTools SNP 44778 44778 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.18%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1652 SAMTools SNP 44787 44787 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1652 SAMTools SNP 44797 44797 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C22%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.21%2C0.15%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold1652 SAMTools SNP 45382 45382 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1652 SAMTools SNP 45859 45859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1652 SAMTools SNP 46016 46016 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1652 SAMTools SNP 46523 46523 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C26%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.12%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1652 SAMTools SNP 46795 46795 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C150:96 scaffold1652 SAMTools SNP 46854 46854 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 48456 48456 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.27%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1652 SAMTools SNP 50692 50692 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 50729 50729 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.033%2C4.7e-10%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1652 SAMTools SNP 50746 50746 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C2%2C13%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.035%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1652 SAMTools SNP 51062 51062 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C18%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1652 SAMTools SNP 51194 51194 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C9%2C14%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1.7e-05%2C3e-45%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1652 SAMTools SNP 51254 51254 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C49%2C2%2C10%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.31%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1652 SAMTools SNP 51464 51464 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.02%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1652 SAMTools SNP 51477 51477 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.58%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1652 SAMTools SNP 52046 52046 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1652 SAMTools SNP 55626 55626 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0052%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 56409 56409 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1652 SAMTools SNP 56437 56437 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1652 SAMTools SNP 56898 56898 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1652 SAMTools SNP 57631 57631 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 57659 57659 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C1%2C8%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1652 SAMTools SNP 58068 58068 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 58382 58382 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 58386 58386 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 62857 62857 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1652 SAMTools SNP 63090 63090 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C205:41 scaffold1652 SAMTools SNP 63271 63271 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1652 SAMTools SNP 63302 63302 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1652 SAMTools SNP 63538 63538 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1652 SAMTools SNP 63995 63995 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1652 SAMTools SNP 64497 64497 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1652 SAMTools SNP 64629 64629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1652 SAMTools SNP 64907 64907 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 65691 65691 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1652 SAMTools SNP 65768 65768 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 68013 68013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 68146 68146 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 72946 72946 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1652 SAMTools SNP 73977 73977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 77136 77136 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1652 SAMTools SNP 77942 77942 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1652 SAMTools SNP 79572 79572 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1652 SAMTools SNP 80909 80909 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C36%2C0:69 scaffold1652 SAMTools SNP 81604 81604 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1652 SAMTools SNP 81655 81655 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 82833 82833 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 83234 83234 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1652 SAMTools SNP 83235 83235 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1652 SAMTools SNP 83523 83523 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1652 SAMTools SNP 88564 88564 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 90518 90518 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 91590 91590 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.37%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C158:55 scaffold1652 SAMTools SNP 91607 91607 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.048%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C154:99 scaffold1652 SAMTools SNP 91860 91860 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1652 SAMTools SNP 91963 91963 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1652 SAMTools SNP 92554 92554 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1652 SAMTools SNP 92581 92581 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1652 SAMTools SNP 92599 92599 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1652 SAMTools SNP 92776 92776 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1652 SAMTools SNP 93251 93251 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold1652 SAMTools SNP 94100 94100 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 94160 94160 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1652 SAMTools SNP 94784 94784 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C231:99 scaffold1652 SAMTools SNP 94844 94844 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1652 SAMTools SNP 95507 95507 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1652 SAMTools SNP 95620 95620 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1652 SAMTools SNP 98562 98562 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1652 SAMTools SNP 99363 99363 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 99422 99422 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 99533 99533 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 99569 99569 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1652 SAMTools SNP 99840 99840 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1652 SAMTools SNP 100072 100072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1652 SAMTools SNP 103114 103114 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1652 SAMTools SNP 103318 103318 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0018%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C69:72 scaffold1652 SAMTools SNP 103359 103359 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C221:51 scaffold1652 SAMTools SNP 103413 103413 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.2e-05%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C113:84 scaffold1652 SAMTools SNP 111163 111163 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.38%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1652 SAMTools SNP 111167 111167 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1652 SAMTools SNP 111955 111955 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1652 SAMTools SNP 111960 111960 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.011%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1652 SAMTools SNP 113363 113363 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1652 SAMTools SNP 113649 113649 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold1652 SAMTools SNP 113715 113715 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1652 SAMTools SNP 114101 114101 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1652 SAMTools SNP 114295 114295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1652 SAMTools SNP 114454 114454 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1652 SAMTools SNP 114472 114472 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold1652 SAMTools SNP 114646 114646 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1652 SAMTools SNP 114742 114742 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1652 SAMTools SNP 116310 116310 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1652 SAMTools SNP 116450 116450 17.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1652 SAMTools SNP 116460 116460 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1652 SAMTools SNP 116724 116724 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C106:28 scaffold1652 SAMTools SNP 116825 116825 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C71:74 scaffold1652 SAMTools SNP 116833 116833 85.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C0:39 scaffold1652 SAMTools SNP 121811 121811 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1652 SAMTools SNP 121821 121821 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1652 SAMTools SNP 123231 123231 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1652 SAMTools SNP 123233 123233 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.42%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1652 SAMTools SNP 123240 123240 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1652 SAMTools SNP 123246 123246 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1652 SAMTools SNP 123891 123891 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.048%2C0.48%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold1652 SAMTools SNP 124348 124348 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1652 SAMTools SNP 124356 124356 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0030%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00034%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1652 SAMTools SNP 124555 124555 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1652 SAMTools SNP 124581 124581 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 143535 143535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C9%2C24%3BMQ%3D43%3BFQ%3D-105%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1652 SAMTools SNP 143802 143802 26.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D22%2C13%2C21%2C1%3BMQ%3D10%3BFQ%3D-40%3BPV4%3D0.0052%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C13%2C0:23 scaffold1652 SAMTools SNP 143892 143892 5.58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5206%3BAC1%3D1%3BDP4%3D1%2C50%2C22%2C48%3BMQ%3D24%3BFQ%3D-16.1%3BPV4%3D1.5e-05%2C6.6e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C11:16 scaffold1652 SAMTools SNP 143965 143965 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C43%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.009%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 144026 144026 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold1652 SAMTools SNP 145939 145939 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 146532 146532 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1652 SAMTools SNP 149228 149228 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1652 SAMTools SNP 149243 149243 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1652 SAMTools SNP 149296 149296 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.032%2C1%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1652 SAMTools SNP 149320 149320 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1652 SAMTools SNP 153061 153061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1652 SAMTools SNP 154698 154698 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold1652 SAMTools SNP 154864 154864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1652 SAMTools SNP 155199 155199 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 155691 155691 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C69%2C0:99 scaffold1652 SAMTools SNP 155709 155709 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C69%2C0:99 scaffold1652 SAMTools SNP 156402 156402 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1652 SAMTools SNP 156423 156423 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1652 SAMTools SNP 156815 156815 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1652 SAMTools SNP 157077 157077 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1652 SAMTools SNP 157601 157601 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 157616 157616 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 158401 158401 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C158:99 scaffold1652 SAMTools SNP 158651 158651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C4%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1652 SAMTools SNP 158726 158726 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1652 SAMTools SNP 158765 158765 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C1%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 158988 158988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1652 SAMTools SNP 159157 159157 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1652 SAMTools SNP 159371 159371 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 159451 159451 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C85:66 scaffold1652 SAMTools SNP 159632 159632 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1652 SAMTools SNP 159716 159716 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1652 SAMTools SNP 159923 159923 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1652 SAMTools SNP 159941 159941 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 160614 160614 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1652 SAMTools SNP 160642 160642 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1652 SAMTools SNP 160818 160818 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold1652 SAMTools SNP 160959 160959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 161307 161307 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1652 SAMTools SNP 161349 161349 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1652 SAMTools SNP 161400 161400 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.47%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold1652 SAMTools SNP 161904 161904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1652 SAMTools SNP 162057 162057 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1652 SAMTools SNP 162060 162060 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1652 SAMTools SNP 166489 166489 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1652 SAMTools SNP 166552 166552 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C88:80 scaffold1652 SAMTools SNP 166655 166655 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1652 SAMTools SNP 166679 166679 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 166724 166724 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1652 SAMTools SNP 166745 166745 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1652 SAMTools SNP 167276 167276 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 168306 168306 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1652 SAMTools SNP 168326 168326 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1652 SAMTools SNP 168649 168649 69.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1652 SAMTools SNP 168706 168706 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1652 SAMTools SNP 168709 168709 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1652 SAMTools SNP 169474 169474 88 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C41%2C32%2C117%2C0%2C114:16 scaffold1652 SAMTools SNP 169698 169698 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1652 SAMTools SNP 169752 169752 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1652 SAMTools SNP 169960 169960 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1652 SAMTools SNP 170451 170451 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C4.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C254:93 scaffold1652 SAMTools SNP 170549 170549 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1652 SAMTools SNP 170571 170571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1652 SAMTools SNP 171416 171416 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold1652 SAMTools SNP 171734 171734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1652 SAMTools SNP 173329 173329 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1652 SAMTools SNP 176803 176803 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 180452 180452 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1652 SAMTools SNP 180522 180522 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 180980 180980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1652 SAMTools SNP 180986 180986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1652 SAMTools SNP 181555 181555 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1652 SAMTools SNP 181577 181577 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1652 SAMTools SNP 181657 181657 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1652 SAMTools SNP 191463 191463 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1652 SAMTools SNP 191529 191529 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold1652 SAMTools SNP 191535 191535 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C7%2C59%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.097%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1652 SAMTools SNP 197010 197010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1652 SAMTools SNP 210884 210884 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1652 SAMTools SNP 214734 214734 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1652 SAMTools SNP 222159 222159 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1652 SAMTools SNP 224080 224080 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D4.93%3BPV4%3D1%2C7.8e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C32:33 scaffold1652 SAMTools SNP 225042 225042 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1652 SAMTools SNP 228037 228037 33.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1652 SAMTools SNP 230761 230761 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1652 SAMTools SNP 234634 234634 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1652 SAMTools SNP 234643 234643 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1652 SAMTools SNP 237925 237925 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 237937 237937 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 245999 245999 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1652 SAMTools SNP 248601 248601 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C19%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C5.9e-32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C180:99 scaffold1652 SAMTools SNP 249349 249349 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1652 SAMTools SNP 249743 249743 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1652 SAMTools SNP 250792 250792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 250795 250795 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 250929 250929 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1652 SAMTools SNP 251258 251258 143 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C79%2C192%2C0%2C186:27 scaffold1652 SAMTools SNP 251291 251291 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold1652 SAMTools SNP 252621 252621 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold1652 SAMTools SNP 254128 254128 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1652 SAMTools SNP 254185 254185 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1652 SAMTools SNP 254942 254942 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1652 SAMTools SNP 255906 255906 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 256256 256256 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1652 SAMTools SNP 256449 256449 65.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold1652 SAMTools SNP 262700 262700 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1652 SAMTools SNP 264666 264666 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.33%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1652 SAMTools SNP 264705 264705 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C31%2C0:59 scaffold1652 SAMTools SNP 266314 266314 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C14%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1652 SAMTools SNP 266989 266989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C12%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1652 SAMTools SNP 267007 267007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C11%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1652 SAMTools SNP 274563 274563 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1652 SAMTools SNP 274794 274794 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1652 SAMTools SNP 290218 290218 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C112:51 scaffold1652 SAMTools SNP 290236 290236 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1652 SAMTools SNP 310983 310983 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1652 SAMTools SNP 322436 322436 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C96%2C0:99 scaffold1652 SAMTools SNP 322454 322454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1652 SAMTools SNP 322529 322529 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C171:99 scaffold1652 SAMTools SNP 322922 322922 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold1652 SAMTools SNP 322970 322970 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1652 SAMTools SNP 323003 323003 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1652 SAMTools SNP 323015 323015 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1652 SAMTools SNP 324463 324463 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1654 SAMTools SNP 868 868 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1654 SAMTools SNP 33176 33176 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1654 SAMTools SNP 33200 33200 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1654 SAMTools SNP 33247 33247 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C10%2C0%3BMQ%3D49%3BFQ%3D87%3BPV4%3D0.0022%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1654 SAMTools SNP 33412 33412 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C7%2C0%3BMQ%3D47%3BFQ%3D14.2%3BPV4%3D0.075%2C5.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1654 SAMTools SNP 35366 35366 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D34%3BFQ%3D9.53%3BPV4%3D0.36%2C0.0017%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C36:39 scaffold1654 SAMTools SNP 36205 36205 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C193:99 scaffold1654 SAMTools SNP 36263 36263 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.8e-19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C178:52 scaffold1654 SAMTools SNP 40534 40534 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.26%2C5.9e-07%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1654 SAMTools SNP 55929 55929 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1654 SAMTools SNP 81517 81517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1654 SAMTools SNP 81575 81575 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1656 SAMTools SNP 23739 23739 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1656 SAMTools SNP 24001 24001 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C71:60 scaffold1656 SAMTools SNP 30440 30440 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1656 SAMTools SNP 30471 30471 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1656 SAMTools SNP 124966 124966 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1656 SAMTools SNP 125157 125157 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1656 SAMTools SNP 125425 125425 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1656 SAMTools SNP 126310 126310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1656 SAMTools SNP 126358 126358 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1656 SAMTools SNP 126363 126363 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1662 SAMTools SNP 2498 2498 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1662 SAMTools SNP 2531 2531 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1662 SAMTools SNP 5084 5084 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1662 SAMTools SNP 5104 5104 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 5196 5196 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 17348 17348 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1662 SAMTools SNP 17354 17354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1662 SAMTools SNP 17483 17483 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C26%2C6%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.45%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1662 SAMTools SNP 19209 19209 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1662 SAMTools SNP 21108 21108 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C57%2C0%2C57%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1.2e-12%2C1%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1662 SAMTools SNP 21162 21162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C145%2C0%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 27741 27741 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1662 SAMTools SNP 27767 27767 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C3%2C0:6 scaffold1662 SAMTools SNP 28260 28260 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D42%3BFQ%3D-41%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C14%2C0:25 scaffold1662 SAMTools SNP 30201 30201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1662 SAMTools SNP 30609 30609 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C27%2C0:51 scaffold1662 SAMTools SNP 30696 30696 57.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold1662 SAMTools SNP 45190 45190 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1662 SAMTools SNP 45238 45238 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C12%2C0:21 scaffold1662 SAMTools SNP 45461 45461 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.3%2C8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1662 SAMTools SNP 45533 45533 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1662 SAMTools SNP 46309 46309 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C5%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.13%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1662 SAMTools SNP 47254 47254 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C215:99 scaffold1662 SAMTools SNP 47296 47296 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1662 SAMTools SNP 47334 47334 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.15%2C1%2C4.9e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 47946 47946 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C0.39%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 48507 48507 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C2.9e-05%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C223:31 scaffold1662 SAMTools SNP 50744 50744 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1662 SAMTools SNP 57054 57054 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C255%2C0:99 scaffold1662 SAMTools SNP 57111 57111 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C0%2C166%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-176%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 57307 57307 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D537%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold1662 SAMTools SNP 57656 57656 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1662 SAMTools SNP 59139 59139 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C32%2C33%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C9.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 59557 59557 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C81%2C24%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 59623 59623 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C7%2C151%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 59938 59938 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C160%2C7%2C70%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.42%2C1.1e-101%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1662 SAMTools SNP 60003 60003 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C4%2C13%2C18%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C31:34 scaffold1662 SAMTools SNP 60568 60568 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1662 SAMTools SNP 60583 60583 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1662 SAMTools SNP 60715 60715 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C17%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1662 SAMTools SNP 61890 61890 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.17%2C1.6e-10%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C102:61 scaffold1662 SAMTools SNP 62206 62206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1662 SAMTools SNP 62251 62251 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1662 SAMTools SNP 62291 62291 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1662 SAMTools SNP 65415 65415 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1662 SAMTools SNP 65479 65479 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 65992 65992 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C58:43 scaffold1662 SAMTools SNP 65993 65993 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1662 SAMTools SNP 65997 65997 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1662 SAMTools SNP 66139 66139 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 70861 70861 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1662 SAMTools SNP 70888 70888 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 72638 72638 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 72948 72948 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 72964 72964 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 73143 73143 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 73704 73704 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1662 SAMTools SNP 74045 74045 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1662 SAMTools SNP 74582 74582 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D95.7%3BPV4%3D1%2C5.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C134:99 scaffold1662 SAMTools SNP 75173 75173 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1662 SAMTools SNP 78574 78574 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1662 SAMTools SNP 78588 78588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 78882 78882 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1662 SAMTools SNP 78897 78897 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1662 SAMTools SNP 81220 81220 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C20%2C8%3BMQ%3D41%3BFQ%3D151%3BPV4%3D0.0021%2C1%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1662 SAMTools SNP 81894 81894 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 81936 81936 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C8%3BMQ%3D44%3BFQ%3D-19%3BPV4%3D0.43%2C0.32%2C0.31%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold1662 SAMTools SNP 81962 81962 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C0%3BMQ%3D44%3BFQ%3D15.1%3BPV4%3D0.21%2C0.37%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1662 SAMTools SNP 82593 82593 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C3%2C23%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.00057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 82595 82595 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C20%2C17%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.0005%2C1%2C0.0046%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 82637 82637 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C14%3BMQ%3D44%3BFQ%3D204%3BPV4%3D0.32%2C0.24%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1662 SAMTools SNP 82682 82682 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C6%2C2%3BMQ%3D39%3BFQ%3D90%3BPV4%3D0.039%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1662 SAMTools SNP 82685 82685 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C6%2C3%3BMQ%3D39%3BFQ%3D137%3BPV4%3D0.12%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1662 SAMTools SNP 83686 83686 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1662 SAMTools SNP 83807 83807 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C102%2C0:99 scaffold1662 SAMTools SNP 84268 84268 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C17%2C31%2C45%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0015%2C2e-116%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1662 SAMTools SNP 84710 84710 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 85309 85309 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C55%2C7%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 85820 85820 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1662 SAMTools SNP 88008 88008 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C234:99 scaffold1662 SAMTools SNP 89019 89019 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 89055 89055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 89091 89091 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C2:5 scaffold1662 SAMTools SNP 89093 89093 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.15%2C6.6e-10%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C185:99 scaffold1662 SAMTools SNP 89821 89821 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1662 SAMTools SNP 90273 90273 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1662 SAMTools SNP 93664 93664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1662 SAMTools SNP 96774 96774 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C215:99 scaffold1662 SAMTools SNP 96786 96786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1662 SAMTools SNP 96831 96831 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1662 SAMTools SNP 96858 96858 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C39%2C0:75 scaffold1662 SAMTools SNP 97818 97818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1662 SAMTools SNP 98228 98228 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 99520 99520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1662 SAMTools SNP 99670 99670 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1662 SAMTools SNP 100009 100009 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1662 SAMTools SNP 100027 100027 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C26:29 scaffold1662 SAMTools SNP 100048 100048 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D3%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C3:6 scaffold1662 SAMTools SNP 102341 102341 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1662 SAMTools SNP 102623 102623 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C17%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1662 SAMTools SNP 102628 102628 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C21%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.00025%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1662 SAMTools SNP 103767 103767 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1662 SAMTools SNP 106802 106802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 106877 106877 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0098%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1662 SAMTools SNP 107667 107667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 110113 110113 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.31%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1662 SAMTools SNP 110260 110260 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C21%2C51%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C5.7e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1662 SAMTools SNP 110344 110344 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C4%2C59%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00021%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 111126 111126 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C53%2C39%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 111164 111164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C51%2C10%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1662 SAMTools SNP 111582 111582 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C31%3BMQ%3D49%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1662 SAMTools SNP 112218 112218 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1662 SAMTools SNP 112553 112553 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1662 SAMTools SNP 112558 112558 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1662 SAMTools SNP 113904 113904 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C4%2C2%3BMQ%3D49%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1662 SAMTools SNP 114968 114968 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1663 SAMTools SNP 3314 3314 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1663 SAMTools SNP 7948 7948 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1663 SAMTools SNP 7983 7983 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C174:99 scaffold1663 SAMTools SNP 9518 9518 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1663 SAMTools SNP 19810 19810 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1663 SAMTools SNP 19855 19855 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1663 SAMTools SNP 23473 23473 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1663 SAMTools SNP 23494 23494 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D3.01%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C30:28 scaffold1663 SAMTools SNP 119976 119976 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1663 SAMTools SNP 119990 119990 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 143274 143274 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C223:99 scaffold1663 SAMTools SNP 174082 174082 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1663 SAMTools SNP 176992 176992 8.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1663 SAMTools SNP 177922 177922 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1663 SAMTools SNP 206243 206243 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 206245 206245 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 206253 206253 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 209363 209363 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 209370 209370 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 209435 209435 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1663 SAMTools SNP 209857 209857 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1663 SAMTools SNP 209870 209870 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1663 SAMTools SNP 229908 229908 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1663 SAMTools SNP 230676 230676 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold1663 SAMTools SNP 233435 233435 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1663 SAMTools SNP 239619 239619 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1663 SAMTools SNP 239657 239657 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1665 SAMTools SNP 1598 1598 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 1744 1744 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 1765 1765 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1665 SAMTools SNP 5977 5977 76.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D0.2%2C0.0017%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C8%2C0:14 scaffold1665 SAMTools SNP 6247 6247 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1665 SAMTools SNP 32072 32072 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1665 SAMTools SNP 33870 33870 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold1665 SAMTools SNP 34205 34205 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D38%3BFQ%3D87%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C179:99 scaffold1665 SAMTools SNP 34824 34824 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C18%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.68%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 34833 34833 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C12%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.24%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 34847 34847 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C12%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.73%2C0.24%2C0.41%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 38980 38980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1131%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D442%2C194%2C68%2C179%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-30%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 40253 40253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1212%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C127%2C1020%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 40279 40279 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C31%2C164%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 40300 40300 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C71%2C7%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-09%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 40613 40613 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2005%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1189%2C157%2C657%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D6.8e-26%2C1e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1665 SAMTools SNP 40673 40673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D917%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D364%2C160%2C377%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-27%2C1.8e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 40679 40679 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2034%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D273%2C721%2C267%2C773%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C9.2e-36%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 41399 41399 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2075%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1066%2C39%2C873%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 41420 41420 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2047%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1869%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 41507 41507 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold1665 SAMTools SNP 43408 43408 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1665 SAMTools SNP 68021 68021 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 68150 68150 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1665 SAMTools SNP 68165 68165 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1665 SAMTools SNP 68303 68303 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1665 SAMTools SNP 81218 81218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1665 SAMTools SNP 81226 81226 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1665 SAMTools SNP 81401 81401 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C60%2C0:99 scaffold1665 SAMTools SNP 81949 81949 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C50%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C186:99 scaffold1665 SAMTools SNP 84505 84505 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1665 SAMTools SNP 91180 91180 68.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold1665 SAMTools SNP 97776 97776 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 97813 97813 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C96:63 scaffold1665 SAMTools SNP 98788 98788 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1665 SAMTools SNP 99128 99128 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1665 SAMTools SNP 99275 99275 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1665 SAMTools SNP 99512 99512 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18.6%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C46:49 scaffold1665 SAMTools SNP 99535 99535 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C6.8e-06%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C223:46 scaffold1665 SAMTools SNP 99621 99621 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0023%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold1665 SAMTools SNP 99638 99638 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C3.2e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C157:44 scaffold1665 SAMTools SNP 99926 99926 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 99930 99930 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 100212 100212 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 100941 100941 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 129913 129913 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1665 SAMTools SNP 130434 130434 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.5%2C0.055%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C240:99 scaffold1665 SAMTools SNP 130440 130440 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C11%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.095%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C191:89 scaffold1665 SAMTools SNP 142544 142544 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1665 SAMTools SNP 149222 149222 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C22%2C44%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.15%2C8.1e-127%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1665 SAMTools SNP 149439 149439 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C10%2C46%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 149499 149499 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C29%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.22%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 151286 151286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 151872 151872 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C43%2C36%2C38%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.75%2C3.1e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1665 SAMTools SNP 152300 152300 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C40%2C0%2C23%3BMQ%3D50%3BFQ%3D62%3BPV4%3D2e-08%2C1%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1665 SAMTools SNP 152417 152417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C22%2C176%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-05%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 153679 153679 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C124%2C0%2C64%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.17%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1665 SAMTools SNP 153707 153707 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C130%2C0%2C61%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.18%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1665 SAMTools SNP 154240 154240 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 154720 154720 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1665 SAMTools SNP 154774 154774 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C3%2C34%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.19%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1665 SAMTools SNP 155079 155079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C51%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 155127 155127 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C55%2C26%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C7.4e-25%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 155755 155755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C171%2C148%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.22%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 156332 156332 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C7%2C85%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1.3e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 156344 156344 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C5%2C4%2C12%3BMQ%3D50%3BFQ%3D41%3BPV4%3D6.2e-11%2C1%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1665 SAMTools SNP 156654 156654 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C95%2C20%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 156927 156927 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C131%2C41%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C6.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 157008 157008 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C140%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 157271 157271 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 157716 157716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C300%2C171%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 158073 158073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 158082 158082 21 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C34%2C25%2C50%2C0%2C47:15 scaffold1665 SAMTools SNP 158624 158624 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 158648 158648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1665 SAMTools SNP 168487 168487 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C159%2C21%2C30%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.88%2C0.096%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1665 SAMTools SNP 168499 168499 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C174%2C18%2C74%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.00026%2C2e-50%2C1%2C1.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1665 SAMTools SNP 168526 168526 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C82%2C58%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00073%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 168661 168661 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C30%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 168673 168673 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 175829 175829 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C63%2C23%2C12%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.27%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1665 SAMTools SNP 179427 179427 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C155%2C36%2C39%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1665 SAMTools SNP 180573 180573 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C7%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.017%2C2.4e-19%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1665 SAMTools SNP 183639 183639 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1665 SAMTools SNP 183802 183802 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1665 SAMTools SNP 184655 184655 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.54%2C4.6e-34%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1665 SAMTools SNP 184682 184682 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1665 SAMTools SNP 184715 184715 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold1665 SAMTools SNP 188782 188782 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C221:99 scaffold1665 SAMTools SNP 191225 191225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C139%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.042%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 192450 192450 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C16%2C110%2C17%3BMQ%3D45%3BFQ%3D-250%3BPV4%3D1.9e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1665 SAMTools SNP 194245 194245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C78%3BMQ%3D23%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 220920 220920 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1665 SAMTools SNP 220926 220926 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1665 SAMTools SNP 221237 221237 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 221637 221637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1665 SAMTools SNP 221662 221662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1665 SAMTools SNP 224390 224390 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1665 SAMTools SNP 224403 224403 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1665 SAMTools SNP 224456 224456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1665 SAMTools SNP 224845 224845 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1665 SAMTools SNP 224985 224985 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1665 SAMTools SNP 241362 241362 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1665 SAMTools SNP 241390 241390 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C54:57 scaffold1665 SAMTools SNP 276291 276291 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1665 SAMTools SNP 279649 279649 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1665 SAMTools SNP 279700 279700 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1665 SAMTools SNP 281634 281634 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.097%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1665 SAMTools SNP 282132 282132 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1665 SAMTools SNP 282156 282156 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1665 SAMTools SNP 288625 288625 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D34%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C158:51 scaffold1665 SAMTools SNP 288702 288702 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D43%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1665 SAMTools SNP 295621 295621 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1665 SAMTools SNP 298541 298541 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 298579 298579 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 300180 300180 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1665 SAMTools SNP 310123 310123 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1665 SAMTools SNP 310197 310197 14.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1665 SAMTools SNP 319649 319649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1665 SAMTools SNP 320875 320875 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C55%2C2%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.21%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1665 SAMTools SNP 321496 321496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1665 SAMTools SNP 344337 344337 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1665 SAMTools SNP 344376 344376 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1665 SAMTools SNP 346128 346128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1665 SAMTools SNP 346197 346197 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1665 SAMTools SNP 346815 346815 17.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1665 SAMTools SNP 346824 346824 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C17%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C157%2C0:99 scaffold1665 SAMTools SNP 349228 349228 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1665 SAMTools SNP 356348 356348 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C0.04%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C152:33 scaffold1665 SAMTools SNP 357936 357936 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 357937 357937 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1665 SAMTools SNP 358651 358651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1665 SAMTools SNP 363737 363737 3.27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C12%2C0:9 scaffold1665 SAMTools SNP 390541 390541 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1665 SAMTools SNP 398732 398732 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C99%2C0:99 scaffold1665 SAMTools SNP 400475 400475 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1670 SAMTools SNP 9806 9806 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 9867 9867 7.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold1670 SAMTools SNP 20396 20396 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1670 SAMTools SNP 20462 20462 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 23885 23885 20.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1670 SAMTools SNP 26576 26576 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1670 SAMTools SNP 26612 26612 96.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold1670 SAMTools SNP 26643 26643 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C18%2C0:33 scaffold1670 SAMTools SNP 31008 31008 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1670 SAMTools SNP 31277 31277 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1670 SAMTools SNP 32890 32890 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 33517 33517 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 34887 34887 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 36955 36955 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1670 SAMTools SNP 37106 37106 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 37121 37121 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1670 SAMTools SNP 37501 37501 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1670 SAMTools SNP 61075 61075 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 68274 68274 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C2%2C31%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C5.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C251:43 scaffold1670 SAMTools SNP 68298 68298 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1402%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1367%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 68786 68786 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1670 SAMTools SNP 76461 76461 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 78376 78376 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1670 SAMTools SNP 86006 86006 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1670 SAMTools SNP 86366 86366 78.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C6%2C0:10 scaffold1670 SAMTools SNP 86423 86423 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1670 SAMTools SNP 92882 92882 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C44%2C0:85 scaffold1670 SAMTools SNP 93203 93203 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0047%2C7.8e-09%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1670 SAMTools SNP 98033 98033 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C66%2C0:99 scaffold1670 SAMTools SNP 98039 98039 30.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0001%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D5%2C0%2C30%2C22%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.14%2C1.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C11:14 scaffold1670 SAMTools SNP 98184 98184 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C225%2C0%2C203%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 100395 100395 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1670 SAMTools SNP 100445 100445 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1670 SAMTools SNP 100457 100457 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C19%2C0%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.02%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1670 SAMTools SNP 100502 100502 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C21%2C3%2C11%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1.1e-05%2C1.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1670 SAMTools SNP 101145 101145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 101433 101433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C62%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1670 SAMTools SNP 101454 101454 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 101469 101469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1670 SAMTools SNP 101492 101492 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C25%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D4.1e-09%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1670 SAMTools SNP 101514 101514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 101761 101761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 102211 102211 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C69%2C22%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 102244 102244 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 102468 102468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 102770 102770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C32%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1670 SAMTools SNP 150182 150182 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1670 SAMTools SNP 150953 150953 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C142:36 scaffold1670 SAMTools SNP 152748 152748 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1670 SAMTools SNP 152766 152766 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1670 SAMTools SNP 152776 152776 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1670 SAMTools SNP 153422 153422 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C175:82 scaffold1670 SAMTools SNP 154590 154590 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.3%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1670 SAMTools SNP 156320 156320 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1670 SAMTools SNP 156335 156335 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1670 SAMTools SNP 156833 156833 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1670 SAMTools SNP 156889 156889 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 156890 156890 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 156943 156943 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1670 SAMTools SNP 159211 159211 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 159223 159223 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1670 SAMTools SNP 159259 159259 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C17:20 scaffold1670 SAMTools SNP 159304 159304 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1670 SAMTools SNP 159646 159646 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1670 SAMTools SNP 159666 159666 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1670 SAMTools SNP 166286 166286 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 167426 167426 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1670 SAMTools SNP 167438 167438 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1670 SAMTools SNP 167598 167598 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1670 SAMTools SNP 167601 167601 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1670 SAMTools SNP 171483 171483 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0058%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C5%2C0:9 scaffold1670 SAMTools SNP 171661 171661 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1670 SAMTools SNP 171715 171715 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1670 SAMTools SNP 171751 171751 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1670 SAMTools SNP 182569 182569 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D37%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1670 SAMTools SNP 182583 182583 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D33%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C42%2C0:81 scaffold1670 SAMTools SNP 184855 184855 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1670 SAMTools SNP 184861 184861 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1670 SAMTools SNP 184918 184918 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C66%2C0:99 scaffold1670 SAMTools SNP 205329 205329 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 205348 205348 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 205803 205803 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1670 SAMTools SNP 213225 213225 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1670 SAMTools SNP 213391 213391 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1670 SAMTools SNP 216980 216980 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 217711 217711 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 217854 217854 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1670 SAMTools SNP 217860 217860 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1670 SAMTools SNP 218601 218601 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1670 SAMTools SNP 220188 220188 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1670 SAMTools SNP 222017 222017 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C85:43 scaffold1670 SAMTools SNP 222067 222067 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1670 SAMTools SNP 222404 222404 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1670 SAMTools SNP 222509 222509 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1670 SAMTools SNP 246479 246479 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1670 SAMTools SNP 249074 249074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.22%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1670 SAMTools SNP 249101 249101 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C0%2C12%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.1%2C0.0023%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1670 SAMTools SNP 254032 254032 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1670 SAMTools SNP 257668 257668 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1670 SAMTools SNP 257910 257910 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1670 SAMTools SNP 259683 259683 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold1670 SAMTools SNP 260474 260474 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1670 SAMTools SNP 261100 261100 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1670 SAMTools SNP 262687 262687 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.26%2C6.3e-08%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1670 SAMTools SNP 262710 262710 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1670 SAMTools SNP 263847 263847 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1670 SAMTools SNP 264688 264688 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1670 SAMTools SNP 264715 264715 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1670 SAMTools SNP 264771 264771 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C1.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1670 SAMTools SNP 264799 264799 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C30%2C0:57 scaffold1670 SAMTools SNP 264811 264811 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold1670 SAMTools SNP 264820 264820 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1670 SAMTools SNP 264827 264827 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.14%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C123:67 scaffold1670 SAMTools SNP 268459 268459 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C30%2C48%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1.5e-06%2C9.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1670 SAMTools SNP 268577 268577 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C65%2C1%2C12%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.32%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1670 SAMTools SNP 272674 272674 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C63%2C0:99 scaffold1670 SAMTools SNP 274137 274137 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1670 SAMTools SNP 274146 274146 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C7%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.43%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1670 SAMTools SNP 274309 274309 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1670 SAMTools SNP 274838 274838 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.43%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1670 SAMTools SNP 275129 275129 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1.4e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1670 SAMTools SNP 275324 275324 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C61%2C11%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1.4e-34%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 276452 276452 101 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C121%2C214%2C0%2C201:51 scaffold1670 SAMTools SNP 276605 276605 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1670 SAMTools SNP 276763 276763 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1670 SAMTools SNP 276886 276886 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1670 SAMTools SNP 276937 276937 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1670 SAMTools SNP 277617 277617 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C39%2C0:75 scaffold1670 SAMTools SNP 277787 277787 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C51%2C0:99 scaffold1670 SAMTools SNP 278162 278162 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1670 SAMTools SNP 278207 278207 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 280089 280089 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1670 SAMTools SNP 280295 280295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1670 SAMTools SNP 280298 280298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1670 SAMTools SNP 281358 281358 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C20%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.092%2C9.3e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1670 SAMTools SNP 281388 281388 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1670 SAMTools SNP 281538 281538 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold1670 SAMTools SNP 281544 281544 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D28.8%3BPV4%3D1%2C9.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C69:59 scaffold1670 SAMTools SNP 284501 284501 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold1670 SAMTools SNP 285053 285053 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 285548 285548 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 285578 285578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 285941 285941 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1670 SAMTools SNP 285991 285991 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1670 SAMTools SNP 286736 286736 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1670 SAMTools SNP 286766 286766 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1670 SAMTools SNP 287000 287000 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1670 SAMTools SNP 287077 287077 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1670 SAMTools SNP 287086 287086 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1670 SAMTools SNP 287883 287883 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1670 SAMTools SNP 287961 287961 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1670 SAMTools SNP 287997 287997 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1670 SAMTools SNP 289085 289085 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C69%3BMQ%3D47%3BFQ%3D-188%3BPV4%3D1%2C3e-26%2C0.35%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C161%2C0:99 scaffold1670 SAMTools SNP 290901 290901 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1670 SAMTools SNP 291391 291391 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1670 SAMTools SNP 291489 291489 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.16%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1670 SAMTools SNP 295432 295432 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1670 SAMTools SNP 296023 296023 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C11%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1670 SAMTools SNP 297001 297001 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1670 SAMTools SNP 297088 297088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 297098 297098 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 297482 297482 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C0.4%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1670 SAMTools SNP 301166 301166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1364%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D705%2C57%2C404%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C0.45%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 304456 304456 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D865%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D220%2C6%2C418%2C199%3BMQ%3D50%3BFQ%3D173%3BPV4%3D5.9e-24%2C0.017%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1670 SAMTools SNP 304631 304631 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 306890 306890 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.31%2C0.0081%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1670 SAMTools SNP 306893 306893 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C13%2C11%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C0.22%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1670 SAMTools SNP 307765 307765 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C18%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 308631 308631 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 308672 308672 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold1670 SAMTools SNP 308683 308683 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.22%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1670 SAMTools SNP 308696 308696 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1670 SAMTools SNP 308719 308719 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1670 SAMTools SNP 308726 308726 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1670 SAMTools SNP 310003 310003 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C4%2C7%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1670 SAMTools SNP 312905 312905 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0015%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1670 SAMTools SNP 312951 312951 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C13%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D4.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1670 SAMTools SNP 314848 314848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1670 SAMTools SNP 314863 314863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1670 SAMTools SNP 315414 315414 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1670 SAMTools SNP 316255 316255 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1670 SAMTools SNP 323141 323141 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1670 SAMTools SNP 323441 323441 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.38%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 323628 323628 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C214:99 scaffold1670 SAMTools SNP 324284 324284 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1670 SAMTools SNP 324314 324314 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1670 SAMTools SNP 324900 324900 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.45%2C2.6e-08%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1670 SAMTools SNP 324932 324932 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1670 SAMTools SNP 324943 324943 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.41%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold1670 SAMTools SNP 325831 325831 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.54%2C0.0024%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1670 SAMTools SNP 325876 325876 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1670 SAMTools SNP 325879 325879 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1670 SAMTools SNP 326168 326168 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1670 SAMTools SNP 326197 326197 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.013%2C1%2C1%2C2.3e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1670 SAMTools SNP 326490 326490 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1670 SAMTools SNP 326998 326998 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1670 SAMTools SNP 327133 327133 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C0%2C16%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.037%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1670 SAMTools SNP 330832 330832 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C18%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.3e-37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C234:57 scaffold1670 SAMTools SNP 330901 330901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1670 SAMTools SNP 331679 331679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 333114 333114 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold1670 SAMTools SNP 333216 333216 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1670 SAMTools SNP 333221 333221 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1670 SAMTools SNP 333541 333541 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1670 SAMTools SNP 342178 342178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1670 SAMTools SNP 344084 344084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 344971 344971 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.38%2C7.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C219:99 scaffold1670 SAMTools SNP 355806 355806 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.15%2C8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C188:42 scaffold1670 SAMTools SNP 356328 356328 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1670 SAMTools SNP 357536 357536 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C4%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1670 SAMTools SNP 361890 361890 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C6%2C88%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 361908 361908 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C9%2C72%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.062%2C5.3e-38%2C1%2C6.8e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1670 SAMTools SNP 362379 362379 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D208%2C171%2C28%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-16%2C0.21%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 362381 362381 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D225%2C223%2C73%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 363086 363086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C58%2C194%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 363127 363127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D794%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C315%2C90%2C376%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-11%2C9.4e-153%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 363238 363238 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C6%2C100%2C77%3BMQ%3D50%3BFQ%3D103%3BPV4%3D6.8e-10%2C2.2e-194%2C1%2C3.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1670 SAMTools SNP 363346 363346 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C81%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.039%2C1%2C1.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 363409 363409 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D304%2C25%2C93%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 363556 363556 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D475%2C16%2C85%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1670 SAMTools SNP 363715 363715 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1212%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D657%2C267%2C251%2C36%3BMQ%3D50%3BFQ%3D221%3BPV4%3D5.7e-09%2C1e-11%2C1%2C6.8e-44;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1670 SAMTools SNP 363867 363867 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1008%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D662%2C52%2C268%2C26%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.44%2C9.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1670 SAMTools SNP 364020 364020 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C240%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 364215 364215 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D662%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C160%2C103%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 364251 364251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C2%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1670 SAMTools SNP 364269 364269 88 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C35%2C8%2C104%2C0%2C101:51 scaffold1670 SAMTools SNP 364380 364380 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1209%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D427%2C129%2C404%2C166%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.025%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1670 SAMTools SNP 364467 364467 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D818%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C16%2C451%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1670 SAMTools SNP 364701 364701 162 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C60%2C216%2C0%2C210:51 scaffold1670 SAMTools SNP 364760 364760 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C27%2C0:50 scaffold1670 SAMTools SNP 364789 364789 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1670 SAMTools SNP 371656 371656 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1670 SAMTools SNP 372738 372738 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 373796 373796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1670 SAMTools SNP 373832 373832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C22%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1670 SAMTools SNP 374259 374259 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C25%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1670 SAMTools SNP 374548 374548 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1670 SAMTools SNP 375028 375028 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1670 SAMTools SNP 377851 377851 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 377854 377854 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 379332 379332 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold1670 SAMTools SNP 384868 384868 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C134:69 scaffold1670 SAMTools SNP 384922 384922 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C23%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1670 SAMTools SNP 385386 385386 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.13%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1670 SAMTools SNP 387039 387039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1670 SAMTools SNP 387672 387672 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1670 SAMTools SNP 387681 387681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1670 SAMTools SNP 388085 388085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1670 SAMTools SNP 388118 388118 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1670 SAMTools SNP 388459 388459 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1670 SAMTools SNP 388463 388463 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C18%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0012%2C0.00012%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1670 SAMTools SNP 388828 388828 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1670 SAMTools SNP 389661 389661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1670 SAMTools SNP 389831 389831 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.36%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1670 SAMTools SNP 389859 389859 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1670 SAMTools SNP 391815 391815 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.009%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1670 SAMTools SNP 391817 391817 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.009%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1670 SAMTools SNP 392325 392325 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold1670 SAMTools SNP 393300 393300 38.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1670 SAMTools SNP 394356 394356 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1670 SAMTools SNP 394389 394389 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1670 SAMTools SNP 394900 394900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C65%3BMQ%3D50%3BFQ%3D-200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C0:99 scaffold1670 SAMTools SNP 395537 395537 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C67%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1670 SAMTools SNP 395618 395618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1670 SAMTools SNP 395629 395629 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold1670 SAMTools SNP 414773 414773 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1670 SAMTools SNP 415364 415364 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C33%2C0:63 scaffold1670 SAMTools SNP 415438 415438 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1670 SAMTools SNP 432685 432685 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1670 SAMTools SNP 453555 453555 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1670 SAMTools SNP 454127 454127 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1670 SAMTools SNP 458925 458925 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1670 SAMTools SNP 458931 458931 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1670 SAMTools SNP 459128 459128 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 459263 459263 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 459974 459974 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1670 SAMTools SNP 466738 466738 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 469071 469071 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1670 SAMTools SNP 474625 474625 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1670 SAMTools SNP 475093 475093 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1670 SAMTools SNP 510060 510060 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 510226 510226 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1670 SAMTools SNP 510525 510525 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1670 SAMTools SNP 510568 510568 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1670 SAMTools SNP 511200 511200 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 15007 15007 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 15029 15029 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 15096 15096 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 18640 18640 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1671 SAMTools SNP 18814 18814 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1671 SAMTools SNP 20729 20729 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1671 SAMTools SNP 20748 20748 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1671 SAMTools SNP 52151 52151 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1671 SAMTools SNP 54553 54553 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1671 SAMTools SNP 54560 54560 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C206:58 scaffold1671 SAMTools SNP 54609 54609 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C27%2C0:51 scaffold1671 SAMTools SNP 55108 55108 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1671 SAMTools SNP 55112 55112 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1671 SAMTools SNP 55824 55824 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1671 SAMTools SNP 55827 55827 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 68685 68685 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1671 SAMTools SNP 108519 108519 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1671 SAMTools SNP 128066 128066 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C54%2C0:84 scaffold1671 SAMTools SNP 128106 128106 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1671 SAMTools SNP 145884 145884 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1671 SAMTools SNP 162994 162994 35.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1671 SAMTools SNP 163076 163076 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1671 SAMTools SNP 163791 163791 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C13%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C184:97 scaffold1671 SAMTools SNP 164156 164156 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C36%2C0:69 scaffold1671 SAMTools SNP 164247 164247 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1671 SAMTools SNP 169250 169250 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 170791 170791 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1671 SAMTools SNP 184318 184318 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 184952 184952 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 184974 184974 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1671 SAMTools SNP 190561 190561 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1671 SAMTools SNP 190595 190595 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1671 SAMTools SNP 191103 191103 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1671 SAMTools SNP 197612 197612 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1671 SAMTools SNP 200057 200057 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 201691 201691 9.97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1671 SAMTools SNP 202105 202105 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.52%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C63:37 scaffold1671 SAMTools SNP 202684 202684 61.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold1671 SAMTools SNP 203257 203257 6.17 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1671 SAMTools SNP 206735 206735 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C212:62 scaffold1671 SAMTools SNP 207255 207255 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.064%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C234:34 scaffold1671 SAMTools SNP 207317 207317 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold1671 SAMTools SNP 207977 207977 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1671 SAMTools SNP 208397 208397 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1671 SAMTools SNP 209099 209099 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C181:99 scaffold1671 SAMTools SNP 210335 210335 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1671 SAMTools SNP 215851 215851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 215875 215875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 216457 216457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1671 SAMTools SNP 216538 216538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1671 SAMTools SNP 216822 216822 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C3%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1671 SAMTools SNP 217108 217108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C28%3BMQ%3D50%3BFQ%3D-107%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C80%2C0:99 scaffold1671 SAMTools SNP 219452 219452 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1671 SAMTools SNP 221675 221675 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1671 SAMTools SNP 223209 223209 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C30%2C0:57 scaffold1671 SAMTools SNP 224952 224952 9.93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C0.036%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold1671 SAMTools SNP 225009 225009 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1671 SAMTools SNP 225203 225203 68.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1671 SAMTools SNP 226915 226915 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1671 SAMTools SNP 228268 228268 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1671 SAMTools SNP 228307 228307 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1671 SAMTools SNP 228683 228683 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1671 SAMTools SNP 229961 229961 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1671 SAMTools SNP 230016 230016 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0076%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1671 SAMTools SNP 230229 230229 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1671 SAMTools SNP 235258 235258 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.029%2C7.9e-10%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1671 SAMTools SNP 235354 235354 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C6.9e-12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1671 SAMTools SNP 239085 239085 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1671 SAMTools SNP 239241 239241 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold1671 SAMTools SNP 239630 239630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C33%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1671 SAMTools SNP 239684 239684 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C33%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1671 SAMTools SNP 241451 241451 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1671 SAMTools SNP 241762 241762 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C218:99 scaffold1671 SAMTools SNP 241774 241774 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.087%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1671 SAMTools SNP 242491 242491 146 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C30%2C0%2C176%2C17%2C173:57 scaffold1671 SAMTools SNP 242800 242800 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C12%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.66%2C4.2e-17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1671 SAMTools SNP 243077 243077 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C13%2C21%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.14%2C2.3e-56%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1671 SAMTools SNP 244026 244026 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1671 SAMTools SNP 246167 246167 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1671 SAMTools SNP 246249 246249 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C18%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.013%2C2.7e-52%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1671 SAMTools SNP 246669 246669 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold1671 SAMTools SNP 246811 246811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C89%2C93%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.9e-26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 247422 247422 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 247464 247464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1671 SAMTools SNP 247494 247494 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.55%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1671 SAMTools SNP 247521 247521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 247768 247768 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0038%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1671 SAMTools SNP 248148 248148 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.22%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1671 SAMTools SNP 248181 248181 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.02%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C89:92 scaffold1671 SAMTools SNP 248184 248184 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.02%2C0.42%2C1%2C2.6e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C232:92 scaffold1671 SAMTools SNP 248681 248681 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C8.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C231:39 scaffold1671 SAMTools SNP 248702 248702 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1671 SAMTools SNP 248757 248757 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1671 SAMTools SNP 249298 249298 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1671 SAMTools SNP 249332 249332 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1671 SAMTools SNP 249591 249591 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1671 SAMTools SNP 249619 249619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1671 SAMTools SNP 249646 249646 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1671 SAMTools SNP 250139 250139 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.55%2C6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1671 SAMTools SNP 250568 250568 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C8%2C19%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.2%2C3.7e-27%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1671 SAMTools SNP 250595 250595 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1671 SAMTools SNP 250598 250598 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C172:99 scaffold1671 SAMTools SNP 250628 250628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C17%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1671 SAMTools SNP 251010 251010 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1671 SAMTools SNP 255559 255559 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C30%2C13%3BMQ%3D28%3BFQ%3D109%3BPV4%3D0.35%2C0.46%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C136:99 scaffold1671 SAMTools SNP 255574 255574 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C49%3BMQ%3D34%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1671 SAMTools SNP 255595 255595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C4%2C67%3BMQ%3D25%3BFQ%3D157%3BPV4%3D0.032%2C1%2C0.15%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1671 SAMTools SNP 256204 256204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 256622 256622 13.9 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C30%2C24%2C44%2C0%2C41:10 scaffold1671 SAMTools SNP 258720 258720 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1671 SAMTools SNP 259574 259574 42.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold1671 SAMTools SNP 259638 259638 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1671 SAMTools SNP 259671 259671 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1671 SAMTools SNP 260431 260431 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.0049%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold1671 SAMTools SNP 261028 261028 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 269978 269978 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1671 SAMTools SNP 270371 270371 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C197%2C58%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 270747 270747 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C453%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 270973 270973 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D277%2C15%2C211%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 271018 271018 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 271021 271021 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C129%2C18%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C2e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 271305 271305 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D766%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C140%2C84%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-21%2C1%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 271404 271404 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C82%2C224%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 271632 271632 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C160%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1671 SAMTools SNP 273357 273357 5.45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D3%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C99%2C0:45 scaffold1671 SAMTools SNP 294809 294809 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 295330 295330 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1671 SAMTools SNP 296151 296151 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.35%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C246:28 scaffold1671 SAMTools SNP 296588 296588 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1671 SAMTools SNP 297621 297621 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1671 SAMTools SNP 297770 297770 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1671 SAMTools SNP 297863 297863 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C172:99 scaffold1671 SAMTools SNP 298043 298043 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1671 SAMTools SNP 299898 299898 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1671 SAMTools SNP 300099 300099 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1671 SAMTools SNP 300476 300476 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1671 SAMTools SNP 303241 303241 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1671 SAMTools SNP 305116 305116 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1671 SAMTools SNP 305246 305246 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1671 SAMTools SNP 320263 320263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 328962 328962 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1671 SAMTools SNP 328974 328974 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1671 SAMTools SNP 330158 330158 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.16%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1671 SAMTools SNP 330537 330537 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C7%2C21%3BMQ%3D41%3BFQ%3D200%3BPV4%3D0.00032%2C3.2e-10%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold1671 SAMTools SNP 330625 330625 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C13%3BMQ%3D34%3BFQ%3D40%3BPV4%3D0.013%2C1%2C0.00011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1671 SAMTools SNP 330884 330884 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C5%3BMQ%3D45%3BFQ%3D17.1%3BPV4%3D0.61%2C1%2C2.5e-05%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1671 SAMTools SNP 330887 330887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C9%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold1671 SAMTools SNP 330908 330908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1671 SAMTools SNP 330935 330935 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.49%2C0.024%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1671 SAMTools SNP 331004 331004 221 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C5%2C5%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.0012%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1671 SAMTools SNP 331440 331440 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C7%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 331688 331688 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.57%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1671 SAMTools SNP 331690 331690 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.31%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1671 SAMTools SNP 332061 332061 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.043%2C3.4e-05%2C1%2C2.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1671 SAMTools SNP 332086 332086 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1671 SAMTools SNP 332110 332110 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C147:85 scaffold1671 SAMTools SNP 333040 333040 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1671 SAMTools SNP 333136 333136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D48%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1671 SAMTools SNP 333166 333166 90 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C11%2C1%3BMQ%3D46%3BFQ%3D93%3BPV4%3D0.0023%2C1%2C0.0017%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1671 SAMTools SNP 333944 333944 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C8%2C5%3BMQ%3D46%3BFQ%3D187%3BPV4%3D0.29%2C0.36%2C0.019%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1671 SAMTools SNP 335188 335188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C23%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.3%2C2.1e-06%2C0.036%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 335236 335236 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.067%2C0.14%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1671 SAMTools SNP 342175 342175 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1671 SAMTools SNP 352310 352310 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1671 SAMTools SNP 353279 353279 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C76:79 scaffold1671 SAMTools SNP 353323 353323 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1671 SAMTools SNP 354247 354247 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 356414 356414 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1671 SAMTools SNP 358619 358619 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D44%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1671 SAMTools SNP 358630 358630 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold1671 SAMTools SNP 358640 358640 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1671 SAMTools SNP 384271 384271 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1671 SAMTools SNP 384536 384536 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1671 SAMTools SNP 384543 384543 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold1671 SAMTools SNP 385393 385393 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1671 SAMTools SNP 386978 386978 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 37389 37389 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1672 SAMTools SNP 37390 37390 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1672 SAMTools SNP 37408 37408 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1672 SAMTools SNP 37528 37528 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1672 SAMTools SNP 37561 37561 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1672 SAMTools SNP 38551 38551 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1672 SAMTools SNP 39536 39536 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 48570 48570 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1672 SAMTools SNP 49257 49257 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1672 SAMTools SNP 49339 49339 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1672 SAMTools SNP 51208 51208 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.017%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C210:60 scaffold1672 SAMTools SNP 55696 55696 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.036%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C145:99 scaffold1672 SAMTools SNP 60993 60993 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C9%2C0:16 scaffold1672 SAMTools SNP 66465 66465 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1672 SAMTools SNP 71069 71069 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1672 SAMTools SNP 71344 71344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C8%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1672 SAMTools SNP 71386 71386 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1672 SAMTools SNP 71572 71572 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C59%2C66%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D2.1e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1672 SAMTools SNP 74786 74786 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C123%2C0:99 scaffold1672 SAMTools SNP 82044 82044 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1672 SAMTools SNP 82203 82203 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold1672 SAMTools SNP 83150 83150 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 83151 83151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 83880 83880 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C1%2C0%3BMQ%3D18%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1672 SAMTools SNP 85004 85004 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1672 SAMTools SNP 88162 88162 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.077%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1672 SAMTools SNP 88195 88195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1672 SAMTools SNP 88327 88327 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.097%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1672 SAMTools SNP 89493 89493 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C5%3BMQ%3D30%3BFQ%3D43%3BPV4%3D0.3%2C0.0065%2C0.026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C119:73 scaffold1672 SAMTools SNP 89506 89506 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D29%3BFQ%3D29.9%3BPV4%3D0.47%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C73:60 scaffold1672 SAMTools SNP 102899 102899 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 102909 102909 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 107730 107730 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1672 SAMTools SNP 107791 107791 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 632 632 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 738 738 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 739 739 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 907 907 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1673 SAMTools SNP 1430 1430 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1673 SAMTools SNP 1849 1849 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C34%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C59:62 scaffold1673 SAMTools SNP 1859 1859 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C34%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C59:62 scaffold1673 SAMTools SNP 2284 2284 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1673 SAMTools SNP 4035 4035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 4610 4610 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.2%2C0.059%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C254:76 scaffold1673 SAMTools SNP 6662 6662 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 6668 6668 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 6938 6938 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1673 SAMTools SNP 6986 6986 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1673 SAMTools SNP 7184 7184 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1673 SAMTools SNP 7196 7196 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1673 SAMTools SNP 7473 7473 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1673 SAMTools SNP 7753 7753 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 9259 9259 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 9559 9559 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.041%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1673 SAMTools SNP 9574 9574 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1673 SAMTools SNP 9794 9794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 9842 9842 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1673 SAMTools SNP 10068 10068 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 10416 10416 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1673 SAMTools SNP 10420 10420 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1673 SAMTools SNP 10918 10918 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold1673 SAMTools SNP 11102 11102 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.27%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1673 SAMTools SNP 11118 11118 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1673 SAMTools SNP 11443 11443 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0011%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1673 SAMTools SNP 11455 11455 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1673 SAMTools SNP 11467 11467 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold1673 SAMTools SNP 11489 11489 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1673 SAMTools SNP 12511 12511 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 12706 12706 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 12736 12736 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 12746 12746 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 13734 13734 22.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold1673 SAMTools SNP 17347 17347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1673 SAMTools SNP 20563 20563 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1673 SAMTools SNP 20566 20566 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 21487 21487 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1673 SAMTools SNP 31411 31411 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C167:99 scaffold1673 SAMTools SNP 32107 32107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C378%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 32140 32140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C341%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 32191 32191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C383%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 32492 32492 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C8%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1673 SAMTools SNP 32510 32510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C13%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1673 SAMTools SNP 33358 33358 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C251%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 33505 33505 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 34087 34087 52.8 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C86%2C80%2C86%2C0%2C80:10 scaffold1673 SAMTools SNP 34240 34240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C15%2C40%2C7%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.051%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 34478 34478 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C87%3BMQ%3D22%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C255%2C0:99 scaffold1673 SAMTools SNP 35627 35627 9.51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D3%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C75%2C0:60 scaffold1673 SAMTools SNP 38332 38332 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D10%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C75%2C0:99 scaffold1673 SAMTools SNP 38656 38656 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C20%3BMQ%3D48%3BFQ%3D209%3BPV4%3D2.4e-07%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1673 SAMTools SNP 38690 38690 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C19%3BMQ%3D47%3BFQ%3D208%3BPV4%3D0.11%2C1%2C1%2C3.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1673 SAMTools SNP 41262 41262 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1673 SAMTools SNP 41265 41265 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D4.56%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C30:33 scaffold1673 SAMTools SNP 41876 41876 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C13%2C7%2C89%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold1673 SAMTools SNP 41894 41894 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C87%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.26%2C1%2C1%2C4.1e-44;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C54:57 scaffold1673 SAMTools SNP 41930 41930 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C39%2C0:75 scaffold1673 SAMTools SNP 42044 42044 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.017%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1673 SAMTools SNP 45216 45216 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1673 SAMTools SNP 45257 45257 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1673 SAMTools SNP 45280 45280 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1673 SAMTools SNP 46420 46420 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C11%2C12%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.44%2C0.28%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1673 SAMTools SNP 46424 46424 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C6%2C9%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.011%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1673 SAMTools SNP 46459 46459 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C77%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 46748 46748 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 46751 46751 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C36%2C9%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.77%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1673 SAMTools SNP 47503 47503 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C49%2C78%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0064%2C0.29%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold1673 SAMTools SNP 47533 47533 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C60%2C1%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1673 SAMTools SNP 47777 47777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C5%2C51%3BMQ%3D50%3BFQ%3D-102%3BPV4%3D0.2%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1673 SAMTools SNP 47786 47786 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C54%2C5%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.00017%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1673 SAMTools SNP 48034 48034 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 48055 48055 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C169:99 scaffold1673 SAMTools SNP 48478 48478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 48551 48551 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C22%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1673 SAMTools SNP 49006 49006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C6%2C75%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.29%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold1673 SAMTools SNP 49999 49999 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C72%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C33%2C0:63 scaffold1673 SAMTools SNP 71947 71947 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1673 SAMTools SNP 71974 71974 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1673 SAMTools SNP 73650 73650 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 88165 88165 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1673 SAMTools SNP 88576 88576 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1673 SAMTools SNP 88594 88594 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1673 SAMTools SNP 88903 88903 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1673 SAMTools SNP 88929 88929 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1673 SAMTools SNP 89086 89086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 89115 89115 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 89350 89350 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 89440 89440 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1673 SAMTools SNP 89736 89736 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1673 SAMTools SNP 89737 89737 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1673 SAMTools SNP 91069 91069 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 94401 94401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 94404 94404 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 95335 95335 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 95388 95388 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 102000 102000 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.2e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C152:36 scaffold1673 SAMTools SNP 102499 102499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1673 SAMTools SNP 104823 104823 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 107900 107900 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 108014 108014 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C71:56 scaffold1673 SAMTools SNP 164009 164009 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1673 SAMTools SNP 169310 169310 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 170166 170166 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1673 SAMTools SNP 170399 170399 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1673 SAMTools SNP 170417 170417 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold1673 SAMTools SNP 170439 170439 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1673 SAMTools SNP 170489 170489 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 170633 170633 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 232098 232098 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C57%2C22%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D9e-11%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1673 SAMTools SNP 232900 232900 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C19%2C71%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1.5e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1673 SAMTools SNP 234884 234884 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 237675 237675 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C42%2C61%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 238933 238933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C49%2C53%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.36%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 238934 238934 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C139%2C51%2C189%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 239281 239281 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C8%2C27%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.092%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 241134 241134 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C39%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 241191 241191 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 241516 241516 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C32%2C56%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 241560 241560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 245070 245070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 245558 245558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C266%2C37%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.12%2C3.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 245848 245848 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C145%2C72%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 245851 245851 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C132%2C55%2C145%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 248572 248572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C52%2C14%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 248632 248632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C44%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C3.3e-29%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 248659 248659 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C35%2C10%2C21%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0016%2C1.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1673 SAMTools SNP 249014 249014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D18%2C0%2C110%2C28%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.045%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1673 SAMTools SNP 249194 249194 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C31%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C151%2C0:99 scaffold1673 SAMTools SNP 249997 249997 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D664%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C112:96 scaffold1673 SAMTools SNP 250158 250158 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.029%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C97:28 scaffold1673 SAMTools SNP 250356 250356 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C255%2C0:99 scaffold1673 SAMTools SNP 250514 250514 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1078%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold1673 SAMTools SNP 251942 251942 48.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1673 SAMTools SNP 252047 252047 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 253700 253700 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.18%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1673 SAMTools SNP 253746 253746 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1673 SAMTools SNP 254090 254090 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1673 SAMTools SNP 254132 254132 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 254156 254156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1673 SAMTools SNP 254536 254536 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0036%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1673 SAMTools SNP 254550 254550 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1673 SAMTools SNP 258139 258139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D635%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 260470 260470 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C83%2C57%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.074%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 260714 260714 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold1673 SAMTools SNP 260826 260826 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 260874 260874 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C61%2C59%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 260919 260919 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C80%2C40%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 261259 261259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C67%2C21%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 263299 263299 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1673 SAMTools SNP 263317 263317 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1673 SAMTools SNP 263388 263388 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1673 SAMTools SNP 263390 263390 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1673 SAMTools SNP 267759 267759 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C36%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 270128 270128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1673 SAMTools SNP 270155 270155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1673 SAMTools SNP 270344 270344 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C4%2C79%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 273125 273125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D228%2C26%2C158%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 273161 273161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 273212 273212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C151%2C12%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C6.8e-28%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 275053 275053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 275083 275083 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C22%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.67%2C1.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1673 SAMTools SNP 275154 275154 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C84%2C0:99 scaffold1673 SAMTools SNP 279179 279179 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C205%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1673 SAMTools SNP 281508 281508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C86%2C18%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 313309 313309 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 316364 316364 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1673 SAMTools SNP 316653 316653 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1673 SAMTools SNP 316678 316678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1673 SAMTools SNP 317162 317162 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.13%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1673 SAMTools SNP 317799 317799 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1673 SAMTools SNP 317800 317800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1673 SAMTools SNP 325006 325006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1673 SAMTools SNP 325042 325042 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.25%2C0.0061%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1673 SAMTools SNP 325351 325351 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1673 SAMTools SNP 325364 325364 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1673 SAMTools SNP 325985 325985 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1673 SAMTools SNP 326024 326024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 326039 326039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 326444 326444 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1673 SAMTools SNP 326785 326785 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.075%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C65:68 scaffold1673 SAMTools SNP 328017 328017 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1673 SAMTools SNP 328041 328041 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1673 SAMTools SNP 328315 328315 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold1673 SAMTools SNP 328364 328364 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1673 SAMTools SNP 329135 329135 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1673 SAMTools SNP 329517 329517 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1673 SAMTools SNP 332560 332560 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1673 SAMTools SNP 332574 332574 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1673 SAMTools SNP 333633 333633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1673 SAMTools SNP 333639 333639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1673 SAMTools SNP 334560 334560 67.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold1673 SAMTools SNP 335424 335424 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1673 SAMTools SNP 347251 347251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1673 SAMTools SNP 348676 348676 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1673 SAMTools SNP 348805 348805 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1673 SAMTools SNP 352255 352255 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1673 SAMTools SNP 358858 358858 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1673 SAMTools SNP 359408 359408 138 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C255%2C0%2C166%2C255%2C163:99 scaffold1673 SAMTools SNP 359994 359994 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1678 SAMTools SNP 3970 3970 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 4113 4113 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1678 SAMTools SNP 4463 4463 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C212%2C393%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.5e-39%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C255%2C0:99 scaffold1678 SAMTools SNP 4504 4504 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0335%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C25:28 scaffold1678 SAMTools SNP 4779 4779 115 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C160%2C0%2C139%2C133%2C136:99 scaffold1678 SAMTools SNP 5046 5046 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1678 SAMTools SNP 5395 5395 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C153%2C191%2C197%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-08%2C3.1e-151%2C0.23%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 5957 5957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C19%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 5964 5964 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1678 SAMTools SNP 5972 5972 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C8%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.014%2C2e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1678 SAMTools SNP 6030 6030 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C19%2C79%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.1e-05%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 6037 6037 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C27%2C92%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 6054 6054 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C23%2C92%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 7914 7914 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C0%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.093%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1678 SAMTools SNP 8102 8102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C17%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 8375 8375 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C88%2C59%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D5.3e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1678 SAMTools SNP 9799 9799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C44%2C46%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.13%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 10458 10458 53.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D943%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1678 SAMTools SNP 10645 10645 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C78%2C0:99 scaffold1678 SAMTools SNP 10916 10916 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C31%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.00033%2C4.1e-23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1678 SAMTools SNP 10943 10943 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C21%2C86%2C8%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.83%2C5.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1678 SAMTools SNP 11351 11351 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D677%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C321%2C29%2C299%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00057%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 11716 11716 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D629%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C302%2C34%2C268%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 11937 11937 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 11965 11965 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C5%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.037%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1678 SAMTools SNP 12081 12081 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C48%2C0:93 scaffold1678 SAMTools SNP 12098 12098 84 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C81%2C0%2C101%2C39%2C95:99 scaffold1678 SAMTools SNP 12311 12311 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C13%3BMQ%3D49%3BFQ%3D-43%3BPV4%3D0.41%2C1.2e-07%2C0.42%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C16%2C0:29 scaffold1678 SAMTools SNP 12696 12696 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-139%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C112%2C0:99 scaffold1678 SAMTools SNP 13080 13080 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C62%2C25%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 13108 13108 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C68%2C25%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 14847 14847 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1678 SAMTools SNP 14850 14850 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1678 SAMTools SNP 14921 14921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1678 SAMTools SNP 14940 14940 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.036%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1678 SAMTools SNP 15255 15255 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 16355 16355 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C224:99 scaffold1678 SAMTools SNP 16365 16365 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.0003%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C243:99 scaffold1678 SAMTools SNP 16426 16426 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1678 SAMTools SNP 18116 18116 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C73%2C34%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 19798 19798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1678 SAMTools SNP 19807 19807 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C14%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.059%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1678 SAMTools SNP 19823 19823 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C81%2C0:99 scaffold1678 SAMTools SNP 20625 20625 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C25%2C45%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.095%2C2e-56%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1678 SAMTools SNP 20717 20717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C154%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 20830 20830 53.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold1678 SAMTools SNP 20953 20953 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold1678 SAMTools SNP 21166 21166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 21229 21229 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C63%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-11%2C1.5e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 21253 21253 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C51%2C0:93 scaffold1678 SAMTools SNP 21367 21367 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C26%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0016%2C3.8e-60%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1678 SAMTools SNP 21954 21954 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.015%2C2.2e-13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C152:52 scaffold1678 SAMTools SNP 25440 25440 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 25491 25491 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1678 SAMTools SNP 26138 26138 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1678 SAMTools SNP 27672 27672 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 30653 30653 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.41%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 30725 30725 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C152:43 scaffold1678 SAMTools SNP 30773 30773 37.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1678 SAMTools SNP 33032 33032 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1678 SAMTools SNP 33843 33843 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1678 SAMTools SNP 58862 58862 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1678 SAMTools SNP 58908 58908 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1678 SAMTools SNP 58915 58915 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1678 SAMTools SNP 58934 58934 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1678 SAMTools SNP 60033 60033 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1678 SAMTools SNP 60052 60052 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1678 SAMTools SNP 60079 60079 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1678 SAMTools SNP 60243 60243 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1678 SAMTools SNP 62415 62415 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1678 SAMTools SNP 62685 62685 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1678 SAMTools SNP 63110 63110 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 63158 63158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 64541 64541 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1678 SAMTools SNP 66599 66599 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1678 SAMTools SNP 102883 102883 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1678 SAMTools SNP 139172 139172 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1678 SAMTools SNP 141191 141191 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.036%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1678 SAMTools SNP 141404 141404 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1678 SAMTools SNP 141515 141515 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 141535 141535 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 153594 153594 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 160847 160847 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1678 SAMTools SNP 160992 160992 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C41:44 scaffold1678 SAMTools SNP 161377 161377 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 161398 161398 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.00079%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C229:99 scaffold1678 SAMTools SNP 162183 162183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 162261 162261 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1678 SAMTools SNP 162821 162821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 162868 162868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C47%2C107%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-12%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 163490 163490 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C41%2C10%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 163519 163519 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 163523 163523 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C96%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 164561 164561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1678 SAMTools SNP 164613 164613 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.051%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1678 SAMTools SNP 166147 166147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C39%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1678 SAMTools SNP 177758 177758 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1678 SAMTools SNP 179295 179295 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C87%3BMQ%3D50%3BFQ%3D-274%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1678 SAMTools SNP 179638 179638 51.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1678 SAMTools SNP 186443 186443 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 188498 188498 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1678 SAMTools SNP 192043 192043 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C219:99 scaffold1678 SAMTools SNP 193120 193120 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.59%2C4.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1678 SAMTools SNP 205063 205063 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold1678 SAMTools SNP 205308 205308 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1678 SAMTools SNP 210200 210200 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1678 SAMTools SNP 213279 213279 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1678 SAMTools SNP 213718 213718 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1678 SAMTools SNP 213731 213731 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1678 SAMTools SNP 214415 214415 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1678 SAMTools SNP 214735 214735 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1678 SAMTools SNP 214934 214934 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 217386 217386 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1678 SAMTools SNP 217791 217791 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold1678 SAMTools SNP 217813 217813 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1678 SAMTools SNP 218009 218009 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1678 SAMTools SNP 218057 218057 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1678 SAMTools SNP 218097 218097 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1678 SAMTools SNP 218350 218350 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1678 SAMTools SNP 218428 218428 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1678 SAMTools SNP 218689 218689 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1678 SAMTools SNP 218727 218727 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 220731 220731 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1678 SAMTools SNP 220738 220738 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1678 SAMTools SNP 224398 224398 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.021%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C251:89 scaffold1678 SAMTools SNP 224437 224437 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold1678 SAMTools SNP 224439 224439 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold1678 SAMTools SNP 224695 224695 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1678 SAMTools SNP 230277 230277 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold1678 SAMTools SNP 230344 230344 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 232329 232329 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1678 SAMTools SNP 232530 232530 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1678 SAMTools SNP 232605 232605 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C25%2C0%2C40%3BMQ%3D50%3BFQ%3D39%3BPV4%3D7.6e-23%2C2.4e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1678 SAMTools SNP 232647 232647 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C103%2C6%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1678 SAMTools SNP 232793 232793 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C5%2C91%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1678 SAMTools SNP 232808 232808 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C88%2C0%2C36%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1678 SAMTools SNP 233295 233295 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1678 SAMTools SNP 233298 233298 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C21:24 scaffold1678 SAMTools SNP 235181 235181 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold1678 SAMTools SNP 236712 236712 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1678 SAMTools SNP 237101 237101 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1678 SAMTools SNP 254761 254761 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 3376 3376 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 3377 3377 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 4012 4012 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C48%2C0:93 scaffold168 SAMTools SNP 127208 127208 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 127242 127242 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 148804 148804 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 178747 178747 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold168 SAMTools SNP 179090 179090 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold168 SAMTools SNP 179355 179355 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 180623 180623 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 251821 251821 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 251870 251870 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 251908 251908 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 251917 251917 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 271829 271829 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold168 SAMTools SNP 275532 275532 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C21%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C157%2C0:99 scaffold168 SAMTools SNP 275774 275774 25.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold168 SAMTools SNP 275843 275843 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold168 SAMTools SNP 275867 275867 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D46.8%3BPV4%3D0.33%2C0.1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C80:77 scaffold168 SAMTools SNP 296874 296874 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 296935 296935 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold168 SAMTools SNP 297374 297374 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 299665 299665 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 299690 299690 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 300449 300449 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold168 SAMTools SNP 300784 300784 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C103:57 scaffold168 SAMTools SNP 301505 301505 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold168 SAMTools SNP 301520 301520 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold168 SAMTools SNP 329682 329682 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold168 SAMTools SNP 332492 332492 87 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C74:77 scaffold168 SAMTools SNP 335440 335440 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 335872 335872 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 335895 335895 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold168 SAMTools SNP 335938 335938 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C1%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold168 SAMTools SNP 336402 336402 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold168 SAMTools SNP 336452 336452 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold168 SAMTools SNP 336470 336470 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 385979 385979 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C13%2C12%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.23%2C1.8e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold168 SAMTools SNP 386017 386017 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.00016%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold168 SAMTools SNP 388581 388581 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold168 SAMTools SNP 389289 389289 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C253:99 scaffold168 SAMTools SNP 389316 389316 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C251:99 scaffold168 SAMTools SNP 389979 389979 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold168 SAMTools SNP 390018 390018 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold168 SAMTools SNP 390488 390488 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 390502 390502 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold168 SAMTools SNP 390525 390525 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.033%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold168 SAMTools SNP 390548 390548 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0088%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold168 SAMTools SNP 395024 395024 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C74:77 scaffold168 SAMTools SNP 395059 395059 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 403077 403077 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C248:66 scaffold168 SAMTools SNP 403519 403519 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 403746 403746 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 420521 420521 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold168 SAMTools SNP 428763 428763 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C9%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold168 SAMTools SNP 428793 428793 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 429697 429697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 429857 429857 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 430067 430067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C42%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold168 SAMTools SNP 430085 430085 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C68%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold168 SAMTools SNP 430189 430189 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold168 SAMTools SNP 430205 430205 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 430504 430504 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C62%2C0%2C59%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1.5e-15%2C2.4e-15%2C1%2C8.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold168 SAMTools SNP 430612 430612 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 430711 430711 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C222:99 scaffold168 SAMTools SNP 430712 430712 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C228:99 scaffold168 SAMTools SNP 430726 430726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C45%2C125%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 430744 430744 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C59%2C170%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 431105 431105 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D253%2C29%2C227%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 431221 431221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D885%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D384%2C59%2C404%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 431439 431439 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D919%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C431%2C38%2C414%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1.4e-151%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 431621 431621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold168 SAMTools SNP 431622 431622 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold168 SAMTools SNP 432217 432217 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C59%2C87%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C2.8e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 432622 432622 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 432811 432811 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C268%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 432934 432934 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1351%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C634%2C547%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 433150 433150 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D922%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C634%2C12%2C115%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold168 SAMTools SNP 433711 433711 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D366%2C22%2C217%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 434616 434616 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold168 SAMTools SNP 437256 437256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1509%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C601%2C740%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 438007 438007 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C132%2C1%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 438014 438014 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C144%2C4%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.011%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 438416 438416 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C10%2C168%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 438422 438422 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C3%2C7%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold168 SAMTools SNP 439250 439250 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold168 SAMTools SNP 443822 443822 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold168 SAMTools SNP 444185 444185 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold168 SAMTools SNP 444592 444592 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 444638 444638 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold168 SAMTools SNP 445117 445117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold168 SAMTools SNP 445138 445138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold168 SAMTools SNP 445761 445761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 445767 445767 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.49%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 445773 445773 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 446019 446019 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 446191 446191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C6%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.004%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold168 SAMTools SNP 446206 446206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold168 SAMTools SNP 446501 446501 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold168 SAMTools SNP 446867 446867 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.14%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C209:99 scaffold168 SAMTools SNP 447148 447148 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C234:99 scaffold168 SAMTools SNP 447166 447166 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold168 SAMTools SNP 447180 447180 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C0.025%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C208:62 scaffold168 SAMTools SNP 447563 447563 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold168 SAMTools SNP 447581 447581 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C190:99 scaffold168 SAMTools SNP 447793 447793 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold168 SAMTools SNP 447796 447796 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.043%2C0.017%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold168 SAMTools SNP 447970 447970 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold168 SAMTools SNP 448024 448024 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 448162 448162 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C13%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold168 SAMTools SNP 448550 448550 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 448705 448705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold168 SAMTools SNP 448759 448759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 449438 449438 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.64%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold168 SAMTools SNP 451591 451591 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold168 SAMTools SNP 451600 451600 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold168 SAMTools SNP 455850 455850 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold168 SAMTools SNP 456378 456378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D279%2C36%2C83%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 456486 456486 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold168 SAMTools SNP 458377 458377 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C16%2C230%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 458398 458398 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C39%2C145%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 460125 460125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C164%2C32%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 460158 460158 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C31%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 460433 460433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C60%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold168 SAMTools SNP 461375 461375 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C0%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold168 SAMTools SNP 462369 462369 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.28%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold168 SAMTools SNP 462695 462695 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C7%2C90%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C3.4e-20%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 462713 462713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 463433 463433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D637%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C449%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 464737 464737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C1%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 467371 467371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 467396 467396 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C31%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold168 SAMTools SNP 467995 467995 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0029%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold168 SAMTools SNP 468040 468040 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 469225 469225 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C15%2C42%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.024%2C0.33%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold168 SAMTools SNP 471341 471341 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold168 SAMTools SNP 471816 471816 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C129%2C1%2C36%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold168 SAMTools SNP 471837 471837 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C79%2C0%2C28%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C250:99 scaffold168 SAMTools SNP 475241 475241 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold168 SAMTools SNP 475295 475295 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 475655 475655 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 482906 482906 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 482927 482927 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 485875 485875 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 485914 485914 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 486626 486626 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold168 SAMTools SNP 486662 486662 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C151:99 scaffold168 SAMTools SNP 486704 486704 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold168 SAMTools SNP 486707 486707 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C149:99 scaffold168 SAMTools SNP 502248 502248 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold168 SAMTools SNP 527681 527681 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 528393 528393 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold168 SAMTools SNP 529386 529386 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 529692 529692 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold168 SAMTools SNP 529704 529704 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C71:74 scaffold168 SAMTools SNP 530463 530463 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.61%3BPV4%3D1%2C0.0015%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C35:38 scaffold168 SAMTools SNP 531203 531203 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 533460 533460 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.17%2C3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C99:82 scaffold168 SAMTools SNP 533503 533503 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C27%2C0:51 scaffold168 SAMTools SNP 548023 548023 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C224:46 scaffold168 SAMTools SNP 550219 550219 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 550220 550220 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 554564 554564 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 592819 592819 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 593608 593608 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold168 SAMTools SNP 598135 598135 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 598166 598166 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 598288 598288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 598587 598587 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C26:29 scaffold168 SAMTools SNP 598608 598608 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold168 SAMTools SNP 599539 599539 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold168 SAMTools SNP 599770 599770 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C33%2C0:63 scaffold168 SAMTools SNP 630067 630067 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 630097 630097 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 665494 665494 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold168 SAMTools SNP 665914 665914 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold168 SAMTools SNP 667791 667791 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C1%3BMQ%3D28%3BFQ%3D8.65%3BPV4%3D0.22%2C1%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C99:36 scaffold168 SAMTools SNP 677681 677681 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C12%2C11%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.52%2C2.5e-30%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold168 SAMTools SNP 680793 680793 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold168 SAMTools SNP 684072 684072 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 684080 684080 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 685477 685477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold168 SAMTools SNP 685512 685512 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 687902 687902 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold168 SAMTools SNP 688363 688363 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold168 SAMTools SNP 688429 688429 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C14%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold168 SAMTools SNP 688450 688450 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C11%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold168 SAMTools SNP 688883 688883 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold168 SAMTools SNP 689573 689573 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold168 SAMTools SNP 690104 690104 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 690122 690122 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold168 SAMTools SNP 691508 691508 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold168 SAMTools SNP 691649 691649 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 692209 692209 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 692336 692336 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 692752 692752 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C19%3BMQ%3D46%3BFQ%3D3.02%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C27:30 scaffold168 SAMTools SNP 692767 692767 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D45%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold168 SAMTools SNP 692821 692821 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold168 SAMTools SNP 692877 692877 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold168 SAMTools SNP 695594 695594 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold168 SAMTools SNP 695617 695617 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold168 SAMTools SNP 695672 695672 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold168 SAMTools SNP 698904 698904 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 698919 698919 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold168 SAMTools SNP 708992 708992 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C39%2C0:75 scaffold168 SAMTools SNP 709064 709064 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 709074 709074 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 709840 709840 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold168 SAMTools SNP 710312 710312 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C20%3BMQ%3D50%3BFQ%3D66.7%3BPV4%3D0.3%2C3.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C106:97 scaffold168 SAMTools SNP 710492 710492 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold168 SAMTools SNP 710586 710586 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C78%2C0:99 scaffold168 SAMTools SNP 710696 710696 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.063%2C3.6e-15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C227:87 scaffold168 SAMTools SNP 710708 710708 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0013%2C1.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C217:99 scaffold168 SAMTools SNP 710729 710729 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C6e-07%2C1%2C6.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold168 SAMTools SNP 710765 710765 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.22%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold168 SAMTools SNP 710836 710836 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold168 SAMTools SNP 710849 710849 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9.6e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C82:48 scaffold168 SAMTools SNP 711008 711008 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.059%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C1%2C0:4 scaffold168 SAMTools SNP 711253 711253 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold168 SAMTools SNP 711283 711283 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold168 SAMTools SNP 711442 711442 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold168 SAMTools SNP 712904 712904 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold168 SAMTools SNP 712952 712952 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold168 SAMTools SNP 713435 713435 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C233:99 scaffold168 SAMTools SNP 713441 713441 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C173:99 scaffold168 SAMTools SNP 713621 713621 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold168 SAMTools SNP 714065 714065 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold168 SAMTools SNP 714068 714068 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold168 SAMTools SNP 714355 714355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.0092%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 714960 714960 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold168 SAMTools SNP 719665 719665 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold168 SAMTools SNP 719969 719969 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.046%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold168 SAMTools SNP 719971 719971 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.014%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold168 SAMTools SNP 720339 720339 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D4.7e-05%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold168 SAMTools SNP 720717 720717 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold168 SAMTools SNP 721840 721840 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D48%2C0%2C277%2C0%3BMQ%3D50%3BFQ%3D-181%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold168 SAMTools SNP 721880 721880 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C308%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 722185 722185 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C196%2C4%2C47%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.47%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold168 SAMTools SNP 722366 722366 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 722417 722417 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold168 SAMTools SNP 722429 722429 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 722910 722910 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold168 SAMTools SNP 722913 722913 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold168 SAMTools SNP 725865 725865 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C36%2C40%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 725916 725916 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C43%2C11%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 726136 726136 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C70%2C1%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 726161 726161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C3%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.057%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 726561 726561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C5%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold168 SAMTools SNP 726567 726567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold168 SAMTools SNP 726587 726587 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold168 SAMTools SNP 726933 726933 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C50%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold168 SAMTools SNP 726959 726959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C49%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold168 SAMTools SNP 726989 726989 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 727311 727311 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 727575 727575 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 727619 727619 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold168 SAMTools SNP 733586 733586 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 734197 734197 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold168 SAMTools SNP 734224 734224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold168 SAMTools SNP 734619 734619 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.027%2C5.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold168 SAMTools SNP 734633 734633 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.071%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold168 SAMTools SNP 735304 735304 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold168 SAMTools SNP 735330 735330 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 735371 735371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold168 SAMTools SNP 736342 736342 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold168 SAMTools SNP 736348 736348 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold168 SAMTools SNP 736633 736633 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold168 SAMTools SNP 736645 736645 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.029%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold168 SAMTools SNP 736726 736726 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C22%2C39%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0022%2C5.6e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold168 SAMTools SNP 737153 737153 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.28%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C232:99 scaffold168 SAMTools SNP 737207 737207 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.14%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C140:99 scaffold168 SAMTools SNP 737312 737312 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 737327 737327 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 737713 737713 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 737782 737782 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold168 SAMTools SNP 738431 738431 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.076%2C6.7e-16%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold168 SAMTools SNP 738503 738503 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 738504 738504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold168 SAMTools SNP 743190 743190 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C18%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold168 SAMTools SNP 743402 743402 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C24%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00026%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 743451 743451 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C30%2C5%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold168 SAMTools SNP 743469 743469 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C6%2C16%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.2%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold168 SAMTools SNP 743956 743956 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold168 SAMTools SNP 746301 746301 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold168 SAMTools SNP 746600 746600 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold168 SAMTools SNP 746645 746645 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.53%2C8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold168 SAMTools SNP 746975 746975 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.036%2C1.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold168 SAMTools SNP 747701 747701 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold168 SAMTools SNP 748026 748026 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold168 SAMTools SNP 748081 748081 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold168 SAMTools SNP 748198 748198 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.007%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C229:75 scaffold168 SAMTools SNP 748285 748285 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.5%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C130:70 scaffold168 SAMTools SNP 748519 748519 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0017%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold168 SAMTools SNP 749033 749033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C14%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.28%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold168 SAMTools SNP 749319 749319 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 749346 749346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C17%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.002%2C0.0074%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold168 SAMTools SNP 749783 749783 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold168 SAMTools SNP 749795 749795 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold168 SAMTools SNP 749973 749973 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold168 SAMTools SNP 750571 750571 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C105%2C0:99 scaffold168 SAMTools SNP 750965 750965 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C204:60 scaffold168 SAMTools SNP 751168 751168 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C45%2C0:87 scaffold168 SAMTools SNP 751259 751259 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.25%2C6.8e-11%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold168 SAMTools SNP 752237 752237 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.027%2C2.4e-11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold168 SAMTools SNP 752340 752340 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C14%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C141%2C0:99 scaffold168 SAMTools SNP 752531 752531 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C25%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.6%2C4.7e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold168 SAMTools SNP 752546 752546 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C46%2C0:88 scaffold168 SAMTools SNP 752958 752958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 755336 755336 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold168 SAMTools SNP 755390 755390 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold168 SAMTools SNP 755432 755432 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold168 SAMTools SNP 761285 761285 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 761288 761288 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 761601 761601 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold168 SAMTools SNP 761603 761603 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 761630 761630 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C165:99 scaffold168 SAMTools SNP 762005 762005 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold168 SAMTools SNP 762602 762602 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C200:99 scaffold168 SAMTools SNP 762802 762802 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold168 SAMTools SNP 763131 763131 24.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold168 SAMTools SNP 763808 763808 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C54%2C0:99 scaffold168 SAMTools SNP 764437 764437 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C72%2C0:99 scaffold168 SAMTools SNP 765159 765159 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold168 SAMTools SNP 765213 765213 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C32:35 scaffold168 SAMTools SNP 770249 770249 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold168 SAMTools SNP 770394 770394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold168 SAMTools SNP 771431 771431 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.088%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold168 SAMTools SNP 771468 771468 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C1%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C232:55 scaffold168 SAMTools SNP 773205 773205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C12%2C2%3BMQ%3D49%3BFQ%3D151%3BPV4%3D1%2C0.27%2C0.26%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold168 SAMTools SNP 773335 773335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold168 SAMTools SNP 774271 774271 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 774739 774739 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold168 SAMTools SNP 774745 774745 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.33%2C0.089%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C65:68 scaffold168 SAMTools SNP 774825 774825 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold168 SAMTools SNP 775128 775128 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold168 SAMTools SNP 775164 775164 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold168 SAMTools SNP 776792 776792 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold168 SAMTools SNP 776798 776798 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold168 SAMTools SNP 776846 776846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 776864 776864 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold168 SAMTools SNP 778015 778015 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold168 SAMTools SNP 778035 778035 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80.9%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C124:99 scaffold168 SAMTools SNP 778051 778051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold168 SAMTools SNP 781701 781701 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold168 SAMTools SNP 781726 781726 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.8%3BPV4%3D1%2C0.24%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C77:80 scaffold168 SAMTools SNP 782233 782233 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.36%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C167:99 scaffold168 SAMTools SNP 792672 792672 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold168 SAMTools SNP 825388 825388 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.19%2C0.01%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C211:99 scaffold168 SAMTools SNP 835552 835552 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 849971 849971 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold168 SAMTools SNP 852296 852296 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 852697 852697 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold168 SAMTools SNP 852709 852709 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold168 SAMTools SNP 853095 853095 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 857972 857972 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold168 SAMTools SNP 858315 858315 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C2%2C70%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 858438 858438 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C69%2C45%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 858769 858769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C76%2C45%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 858865 858865 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold168 SAMTools SNP 858973 858973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C100%2C12%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 858985 858985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 859549 859549 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C87%2C0%2C43%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.18%2C7.9e-11%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold168 SAMTools SNP 863344 863344 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold168 SAMTools SNP 863362 863362 40.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold168 SAMTools SNP 864317 864317 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C42%2C0:81 scaffold168 SAMTools SNP 864520 864520 11.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold168 SAMTools SNP 864526 864526 12.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold168 SAMTools SNP 864682 864682 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold168 SAMTools SNP 865170 865170 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 865551 865551 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C103%2C107%2C133%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.92%2C1.2e-274%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold168 SAMTools SNP 865875 865875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 865929 865929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 866116 866116 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold168 SAMTools SNP 870744 870744 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C30%2C0:57 scaffold168 SAMTools SNP 870933 870933 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold168 SAMTools SNP 870975 870975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 871011 871011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 871467 871467 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold168 SAMTools SNP 871524 871524 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C62%2C5%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 872450 872450 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C5%3BMQ%3D49%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C242:99 scaffold168 SAMTools SNP 872489 872489 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C7%2C0%3BMQ%3D48%3BFQ%3D71%3BPV4%3D0.0086%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold168 SAMTools SNP 872978 872978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold168 SAMTools SNP 878839 878839 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold168 SAMTools SNP 878893 878893 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 878894 878894 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 879452 879452 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold168 SAMTools SNP 879742 879742 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D42%3BPV4%3D2.8e-05%2C1.4e-07%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold168 SAMTools SNP 879758 879758 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold168 SAMTools SNP 880070 880070 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C18%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D2.5e-05%2C7.9e-09%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold168 SAMTools SNP 881124 881124 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold168 SAMTools SNP 881141 881141 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 882868 882868 67.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold168 SAMTools SNP 887299 887299 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.65%2C1.4e-16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold168 SAMTools SNP 887456 887456 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.24%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C160:99 scaffold168 SAMTools SNP 887977 887977 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold168 SAMTools SNP 888022 888022 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C189:99 scaffold168 SAMTools SNP 888097 888097 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.54%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold168 SAMTools SNP 888118 888118 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold168 SAMTools SNP 888677 888677 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C195:99 scaffold168 SAMTools SNP 888719 888719 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold168 SAMTools SNP 888779 888779 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold168 SAMTools SNP 888800 888800 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold168 SAMTools SNP 888968 888968 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold168 SAMTools SNP 889385 889385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold168 SAMTools SNP 889388 889388 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.32%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold168 SAMTools SNP 889406 889406 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold168 SAMTools SNP 889747 889747 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold168 SAMTools SNP 890255 890255 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold168 SAMTools SNP 890294 890294 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 890363 890363 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 890369 890369 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold168 SAMTools SNP 890754 890754 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold168 SAMTools SNP 890802 890802 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold168 SAMTools SNP 890820 890820 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold168 SAMTools SNP 891501 891501 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold168 SAMTools SNP 892322 892322 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold168 SAMTools SNP 892325 892325 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold168 SAMTools SNP 892328 892328 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold168 SAMTools SNP 892346 892346 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 892766 892766 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold168 SAMTools SNP 892808 892808 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 901165 901165 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold168 SAMTools SNP 909203 909203 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C13%2C4%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.62%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold168 SAMTools SNP 909210 909210 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C16%2C1%2C11%3BMQ%3D50%3BFQ%3D116%3BPV4%3D2.1e-05%2C0.13%2C1%2C9.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold168 SAMTools SNP 909219 909219 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C19%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C6.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 910473 910473 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C1%2C111%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-10%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 912073 912073 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold168 SAMTools SNP 912658 912658 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 917833 917833 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C12%2C16%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.24%2C2.8e-14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold168 SAMTools SNP 917902 917902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold168 SAMTools SNP 922624 922624 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C198%2C25%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0023%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 923090 923090 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C8%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0079%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold168 SAMTools SNP 923093 923093 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D61%3BPV4%3D3.6e-05%2C1.3e-10%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold168 SAMTools SNP 923123 923123 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C53%2C2%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.18%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold168 SAMTools SNP 923849 923849 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold168 SAMTools SNP 925686 925686 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C59%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 933389 933389 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2189%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.86%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C37:33 scaffold168 SAMTools SNP 933988 933988 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D195%2C38%2C248%2C24%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.014%2C1%2C8.4e-18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 936066 936066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C6%2C8%2C270%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold168 SAMTools SNP 937426 937426 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold168 SAMTools SNP 937715 937715 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold168 SAMTools SNP 938004 938004 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.086%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C246:31 scaffold168 SAMTools SNP 938142 938142 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold168 SAMTools SNP 938166 938166 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold168 SAMTools SNP 938545 938545 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C2.7e-09%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold168 SAMTools SNP 938731 938731 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C18%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0051%2C9.9e-23%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold168 SAMTools SNP 938772 938772 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C15%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C148%2C0:99 scaffold168 SAMTools SNP 938838 938838 11.3 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C18%2C40%2C0%2C37:13 scaffold168 SAMTools SNP 938992 938992 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold168 SAMTools SNP 939052 939052 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.23%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C29:32 scaffold168 SAMTools SNP 942800 942800 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold168 SAMTools SNP 944347 944347 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold168 SAMTools SNP 944350 944350 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold168 SAMTools SNP 947287 947287 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold168 SAMTools SNP 950331 950331 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold168 SAMTools SNP 950421 950421 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold168 SAMTools SNP 950439 950439 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold168 SAMTools SNP 950457 950457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold168 SAMTools SNP 951007 951007 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold168 SAMTools SNP 951100 951100 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.61%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C228:99 scaffold168 SAMTools SNP 952731 952731 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0094%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold168 SAMTools SNP 952750 952750 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold168 SAMTools SNP 953222 953222 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold168 SAMTools SNP 953261 953261 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 953709 953709 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 953787 953787 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold168 SAMTools SNP 953793 953793 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 956237 956237 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C9%3BMQ%3D49%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold168 SAMTools SNP 956294 956294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold168 SAMTools SNP 956351 956351 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold168 SAMTools SNP 956491 956491 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C158:51 scaffold168 SAMTools SNP 956518 956518 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold168 SAMTools SNP 957901 957901 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C9%3BMQ%3D48%3BFQ%3D91%3BPV4%3D0.6%2C0.064%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold168 SAMTools SNP 957931 957931 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold168 SAMTools SNP 958899 958899 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C5%2C1%3BMQ%3D48%3BFQ%3D148%3BPV4%3D0.0055%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold168 SAMTools SNP 958959 958959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold168 SAMTools SNP 959188 959188 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold168 SAMTools SNP 960092 960092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 960137 960137 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.31%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold168 SAMTools SNP 960781 960781 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C15%2C0:27 scaffold168 SAMTools SNP 960799 960799 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold168 SAMTools SNP 960811 960811 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.32%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold168 SAMTools SNP 961215 961215 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold168 SAMTools SNP 961235 961235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 962229 962229 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold168 SAMTools SNP 962241 962241 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold168 SAMTools SNP 962621 962621 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold168 SAMTools SNP 962630 962630 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 963721 963721 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 964266 964266 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 965302 965302 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold168 SAMTools SNP 965317 965317 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold168 SAMTools SNP 966112 966112 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold168 SAMTools SNP 966208 966208 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold168 SAMTools SNP 970027 970027 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold168 SAMTools SNP 975369 975369 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold168 SAMTools SNP 986645 986645 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 986661 986661 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 986717 986717 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 988503 988503 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold168 SAMTools SNP 990661 990661 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.057%2C9.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold168 SAMTools SNP 990677 990677 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.011%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold168 SAMTools SNP 990685 990685 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C5.9e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold168 SAMTools SNP 992088 992088 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold168 SAMTools SNP 1000105 1000105 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.014%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C141:99 scaffold168 SAMTools SNP 1000140 1000140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold168 SAMTools SNP 1001701 1001701 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 1052443 1052443 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.4e-05%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C124:41 scaffold168 SAMTools SNP 1053137 1053137 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.22%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold168 SAMTools SNP 1053210 1053210 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold168 SAMTools SNP 1073315 1073315 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold168 SAMTools SNP 1078554 1078554 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold168 SAMTools SNP 1078609 1078609 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold168 SAMTools SNP 1078645 1078645 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold168 SAMTools SNP 1078685 1078685 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold168 SAMTools SNP 1082990 1082990 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold168 SAMTools SNP 1083904 1083904 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold168 SAMTools SNP 1084287 1084287 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold168 SAMTools SNP 1089864 1089864 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold168 SAMTools SNP 1092310 1092310 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1680 SAMTools SNP 7740 7740 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.021%2C0.00012%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C238:43 scaffold1680 SAMTools SNP 8169 8169 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.29%2C1.1e-09%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C236:58 scaffold1680 SAMTools SNP 9527 9527 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C21%2C0:39 scaffold1680 SAMTools SNP 25741 25741 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.69%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1680 SAMTools SNP 26553 26553 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.37%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1680 SAMTools SNP 26758 26758 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1680 SAMTools SNP 27488 27488 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C0%2C24%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.083%2C3.5e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1680 SAMTools SNP 27531 27531 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1680 SAMTools SNP 28684 28684 64.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold1680 SAMTools SNP 29104 29104 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1680 SAMTools SNP 29107 29107 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1680 SAMTools SNP 29416 29416 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1680 SAMTools SNP 35440 35440 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D46%3BFQ%3D99.8%3BPV4%3D1%2C1%2C0.13%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C127:99 scaffold1680 SAMTools SNP 35517 35517 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D41%3BFQ%3D9.53%3BPV4%3D0.44%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C108:37 scaffold1680 SAMTools SNP 36955 36955 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1680 SAMTools SNP 36959 36959 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0049%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1680 SAMTools SNP 41462 41462 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1680 SAMTools SNP 48231 48231 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1680 SAMTools SNP 48238 48238 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1680 SAMTools SNP 53103 53103 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1680 SAMTools SNP 53826 53826 36.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1680 SAMTools SNP 60225 60225 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1680 SAMTools SNP 61044 61044 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C180:99 scaffold1680 SAMTools SNP 61101 61101 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.048%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C160:51 scaffold1680 SAMTools SNP 62226 62226 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.58%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1680 SAMTools SNP 62273 62273 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1680 SAMTools SNP 64033 64033 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.00068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold1680 SAMTools SNP 65093 65093 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.13%2C0.014%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1680 SAMTools SNP 66075 66075 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1680 SAMTools SNP 66276 66276 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1680 SAMTools SNP 66436 66436 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C33%2C0:63 scaffold1680 SAMTools SNP 67762 67762 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.4%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold1680 SAMTools SNP 67813 67813 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1680 SAMTools SNP 68280 68280 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1680 SAMTools SNP 68358 68358 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.052%2C2.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1680 SAMTools SNP 76351 76351 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1680 SAMTools SNP 76455 76455 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1680 SAMTools SNP 77092 77092 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1682 SAMTools SNP 404 404 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1682 SAMTools SNP 446 446 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold1682 SAMTools SNP 1661 1661 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold1682 SAMTools SNP 1662 1662 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1682 SAMTools SNP 2483 2483 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C121:80 scaffold1682 SAMTools SNP 2525 2525 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1682 SAMTools SNP 2663 2663 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1682 SAMTools SNP 4594 4594 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1682 SAMTools SNP 5169 5169 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 7154 7154 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1682 SAMTools SNP 7190 7190 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1682 SAMTools SNP 7199 7199 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 9392 9392 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 90990 90990 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1682 SAMTools SNP 142401 142401 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.3e-23%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C195:46 scaffold1682 SAMTools SNP 146896 146896 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 147351 147351 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 210825 210825 35.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold1682 SAMTools SNP 211188 211188 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1682 SAMTools SNP 211214 211214 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1682 SAMTools SNP 240687 240687 6.19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D1%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C63%2C0:48 scaffold1682 SAMTools SNP 241386 241386 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C9%3BMQ%3D24%3BFQ%3D39%3BPV4%3D0.39%2C0.12%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C66:69 scaffold1682 SAMTools SNP 246321 246321 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D0%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C105%2C0:63 scaffold1682 SAMTools SNP 255140 255140 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C16%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1682 SAMTools SNP 255173 255173 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C22%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1682 SAMTools SNP 256595 256595 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 283307 283307 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1682 SAMTools SNP 299627 299627 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1682 SAMTools SNP 299943 299943 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1682 SAMTools SNP 308256 308256 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 313358 313358 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1682 SAMTools SNP 317755 317755 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1682 SAMTools SNP 318229 318229 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1682 SAMTools SNP 318262 318262 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 390750 390750 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1682 SAMTools SNP 390796 390796 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1682 SAMTools SNP 390862 390862 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1682 SAMTools SNP 391950 391950 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1682 SAMTools SNP 392124 392124 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1682 SAMTools SNP 393212 393212 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold1682 SAMTools SNP 393797 393797 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1682 SAMTools SNP 394375 394375 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1682 SAMTools SNP 394414 394414 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1682 SAMTools SNP 396670 396670 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1682 SAMTools SNP 396678 396678 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1682 SAMTools SNP 396856 396856 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1682 SAMTools SNP 412656 412656 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C90%2C0:99 scaffold1682 SAMTools SNP 412863 412863 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 412874 412874 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1682 SAMTools SNP 413455 413455 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.29%2C0.084%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1682 SAMTools SNP 414386 414386 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C54%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1682 SAMTools SNP 414407 414407 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1682 SAMTools SNP 414498 414498 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C60%2C0:99 scaffold1682 SAMTools SNP 414710 414710 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1682 SAMTools SNP 414737 414737 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 419556 419556 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold1682 SAMTools SNP 419899 419899 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1682 SAMTools SNP 419925 419925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1682 SAMTools SNP 421025 421025 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1682 SAMTools SNP 447440 447440 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C255%2C0:99 scaffold1682 SAMTools SNP 447595 447595 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1686 SAMTools SNP 1314 1314 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1686 SAMTools SNP 1471 1471 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1686 SAMTools SNP 3559 3559 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1686 SAMTools SNP 3567 3567 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1686 SAMTools SNP 3595 3595 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1686 SAMTools SNP 90703 90703 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1686 SAMTools SNP 91332 91332 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1686 SAMTools SNP 118544 118544 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1686 SAMTools SNP 119022 119022 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 12782 12782 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold1687 SAMTools SNP 16783 16783 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C93:49 scaffold1687 SAMTools SNP 16828 16828 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold1687 SAMTools SNP 16831 16831 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1687 SAMTools SNP 17951 17951 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 18310 18310 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1687 SAMTools SNP 18414 18414 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0017%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1687 SAMTools SNP 18439 18439 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1687 SAMTools SNP 20108 20108 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 20150 20150 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C21%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D4.8e-09%2C1.4e-18%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1687 SAMTools SNP 20159 20159 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.036%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1687 SAMTools SNP 20177 20177 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1687 SAMTools SNP 20808 20808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1687 SAMTools SNP 21268 21268 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C0.25%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold1687 SAMTools SNP 26521 26521 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C1%2C7%3BMQ%3D26%3BFQ%3D-32%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C5%2C0:9 scaffold1687 SAMTools SNP 26542 26542 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D29%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C36%2C0:69 scaffold1687 SAMTools SNP 26886 26886 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1687 SAMTools SNP 26913 26913 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold1687 SAMTools SNP 26940 26940 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C0%3BMQ%3D49%3BFQ%3D130%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C225:99 scaffold1687 SAMTools SNP 27423 27423 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1687 SAMTools SNP 27438 27438 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.26%2C0.0042%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1687 SAMTools SNP 27999 27999 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold1687 SAMTools SNP 28041 28041 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 28047 28047 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold1687 SAMTools SNP 28636 28636 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 28637 28637 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 28684 28684 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1687 SAMTools SNP 29210 29210 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1687 SAMTools SNP 29808 29808 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1687 SAMTools SNP 29838 29838 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1687 SAMTools SNP 30333 30333 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1687 SAMTools SNP 31868 31868 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C241:99 scaffold1687 SAMTools SNP 31897 31897 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C137:99 scaffold1687 SAMTools SNP 32578 32578 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C137:99 scaffold1687 SAMTools SNP 32635 32635 222 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0%2C250%2C21%2C247:99 scaffold1687 SAMTools SNP 32694 32694 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.031%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 32695 32695 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 33691 33691 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C37%2C1%2C11%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.16%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1687 SAMTools SNP 34707 34707 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C5%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1687 SAMTools SNP 34710 34710 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C5%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1687 SAMTools SNP 34728 34728 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C20%2C13%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1687 SAMTools SNP 34784 34784 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1687 SAMTools SNP 37011 37011 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C3%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.11%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1687 SAMTools SNP 39152 39152 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 43635 43635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1687 SAMTools SNP 43971 43971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C29%2C17%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold1687 SAMTools SNP 44012 44012 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.043%2C0.17%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1687 SAMTools SNP 44202 44202 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1687 SAMTools SNP 44416 44416 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.54%2C3.6e-24%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1687 SAMTools SNP 44484 44484 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C12%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.17%2C2.6e-30%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1687 SAMTools SNP 44727 44727 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C70:73 scaffold1687 SAMTools SNP 44748 44748 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold1687 SAMTools SNP 45153 45153 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold1687 SAMTools SNP 45480 45480 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C39%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1.1e-09%2C5.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1687 SAMTools SNP 45588 45588 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C39%2C21%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D5.8e-05%2C3.3e-29%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1687 SAMTools SNP 45603 45603 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C38%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C187%2C0:99 scaffold1687 SAMTools SNP 47720 47720 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 47756 47756 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1687 SAMTools SNP 47974 47974 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 48095 48095 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1687 SAMTools SNP 48537 48537 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C3.8e-22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C209:84 scaffold1687 SAMTools SNP 48551 48551 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.36%2C3.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C235:41 scaffold1687 SAMTools SNP 48872 48872 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1687 SAMTools SNP 48956 48956 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D44%3BFQ%3D7.28%3BPV4%3D0.33%2C2.6e-10%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C34:37 scaffold1687 SAMTools SNP 83019 83019 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 83075 83075 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1687 SAMTools SNP 83537 83537 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1687 SAMTools SNP 83543 83543 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1687 SAMTools SNP 83552 83552 34.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1687 SAMTools SNP 83582 83582 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 83645 83645 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.15%2C0.21%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1687 SAMTools SNP 85149 85149 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.15%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1687 SAMTools SNP 85308 85308 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C84%2C11%2C35%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.047%2C3.6e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1687 SAMTools SNP 91653 91653 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.6e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1687 SAMTools SNP 92205 92205 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C81%2C0:99 scaffold1687 SAMTools SNP 92472 92472 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C13%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C187%2C0:99 scaffold1687 SAMTools SNP 92505 92505 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold1687 SAMTools SNP 92517 92517 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1687 SAMTools SNP 108908 108908 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1687 SAMTools SNP 108974 108974 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0198%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1687 SAMTools SNP 109394 109394 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold1687 SAMTools SNP 109415 109415 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C229:33 scaffold1687 SAMTools SNP 117654 117654 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 117691 117691 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 119478 119478 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1687 SAMTools SNP 122559 122559 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1687 SAMTools SNP 122587 122587 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 123906 123906 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1687 SAMTools SNP 133594 133594 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1687 SAMTools SNP 140173 140173 19 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1687 SAMTools SNP 140351 140351 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C24%2C0:45 scaffold1687 SAMTools SNP 140377 140377 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1687 SAMTools SNP 141873 141873 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1687 SAMTools SNP 143222 143222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1687 SAMTools SNP 143582 143582 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1687 SAMTools SNP 143596 143596 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1687 SAMTools SNP 143618 143618 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 143665 143665 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1687 SAMTools SNP 143703 143703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1687 SAMTools SNP 145217 145217 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1687 SAMTools SNP 145266 145266 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1687 SAMTools SNP 146328 146328 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1687 SAMTools SNP 146334 146334 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1687 SAMTools SNP 146607 146607 51.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold1687 SAMTools SNP 146964 146964 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1687 SAMTools SNP 147205 147205 35.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1687 SAMTools SNP 147323 147323 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C27%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C247%2C0:99 scaffold1687 SAMTools SNP 147944 147944 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0:57 scaffold1687 SAMTools SNP 148961 148961 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 148974 148974 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1687 SAMTools SNP 149023 149023 41.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1687 SAMTools SNP 149203 149203 17.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1687 SAMTools SNP 153776 153776 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1687 SAMTools SNP 154462 154462 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1687 SAMTools SNP 190328 190328 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C4%2C0%3BMQ%3D44%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C253:53 scaffold1687 SAMTools SNP 193223 193223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1687 SAMTools SNP 193409 193409 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1687 SAMTools SNP 193447 193447 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1687 SAMTools SNP 195510 195510 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1687 SAMTools SNP 195832 195832 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1687 SAMTools SNP 199926 199926 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C7%2C8%3BMQ%3D44%3BFQ%3D-52%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1687 SAMTools SNP 199960 199960 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C3%3BMQ%3D48%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1687 SAMTools SNP 202121 202121 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1688 SAMTools SNP 81683 81683 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1688 SAMTools SNP 92216 92216 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1688 SAMTools SNP 102237 102237 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 102450 102450 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 104059 104059 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1688 SAMTools SNP 108890 108890 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C0%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C253%2C0:99 scaffold1688 SAMTools SNP 109215 109215 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 109415 109415 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C44%2C214%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 109419 109419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C31%2C141%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 109879 109879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C39%2C38%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.00019%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 109891 109891 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C91%2C27%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-07%2C0.0025%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 110266 110266 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D731%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C221%2C149%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 113008 113008 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1688 SAMTools SNP 114890 114890 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C68%2C15%2C59%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 119027 119027 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 119868 119868 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 124667 124667 63.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold1688 SAMTools SNP 124774 124774 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.13%2C1.1e-06%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1688 SAMTools SNP 126109 126109 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold1688 SAMTools SNP 128571 128571 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1688 SAMTools SNP 128956 128956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold1688 SAMTools SNP 129878 129878 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1688 SAMTools SNP 137963 137963 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 139170 139170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C80%2C7%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 142999 142999 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C160:61 scaffold1688 SAMTools SNP 143064 143064 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.44%2C0.14%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C193:99 scaffold1688 SAMTools SNP 143426 143426 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C200:99 scaffold1688 SAMTools SNP 143519 143519 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.65%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1688 SAMTools SNP 144078 144078 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 144174 144174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1688 SAMTools SNP 144221 144221 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 144856 144856 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.51%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1688 SAMTools SNP 144889 144889 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 145206 145206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 146643 146643 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.45%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C218:99 scaffold1688 SAMTools SNP 146656 146656 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1688 SAMTools SNP 146861 146861 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.47%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1688 SAMTools SNP 147409 147409 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.57%2C1%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1688 SAMTools SNP 147876 147876 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.22%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1688 SAMTools SNP 147915 147915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 148229 148229 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.041%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1688 SAMTools SNP 148253 148253 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C21%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1688 SAMTools SNP 148712 148712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1688 SAMTools SNP 148729 148729 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1688 SAMTools SNP 148760 148760 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1688 SAMTools SNP 148779 148779 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D7.5e-05%2C1%2C1%2C5.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1688 SAMTools SNP 149206 149206 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 149244 149244 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 149254 149254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 149670 149670 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 149697 149697 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 153789 153789 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.41%2C2.1e-13%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1688 SAMTools SNP 163822 163822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C39%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1688 SAMTools SNP 164006 164006 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C5%2C0%3BMQ%3D46%3BFQ%3D61%3BPV4%3D0.0093%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1688 SAMTools SNP 164553 164553 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D43%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1688 SAMTools SNP 164737 164737 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 168809 168809 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C11%2C0%3BMQ%3D47%3BFQ%3D28%3BPV4%3D0.58%2C0.00098%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1688 SAMTools SNP 175741 175741 7.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D13%2C0%2C14%2C7%3BMQ%3D9%3BFQ%3D-39%3BPV4%3D0.029%2C0.056%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1688 SAMTools SNP 186653 186653 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.023%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1688 SAMTools SNP 187070 187070 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C240:99 scaffold1688 SAMTools SNP 189327 189327 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1688 SAMTools SNP 190081 190081 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold1688 SAMTools SNP 190085 190085 28.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1688 SAMTools SNP 191634 191634 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 192046 192046 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 197380 197380 90.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold1688 SAMTools SNP 198835 198835 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D35%3BFQ%3D13.2%3BPV4%3D1%2C0.057%2C0.26%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C78:42 scaffold1688 SAMTools SNP 199418 199418 27.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold1688 SAMTools SNP 199487 199487 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold1688 SAMTools SNP 199670 199670 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.13%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C200:99 scaffold1688 SAMTools SNP 199685 199685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1688 SAMTools SNP 199718 199718 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1688 SAMTools SNP 201804 201804 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1688 SAMTools SNP 202022 202022 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1688 SAMTools SNP 202112 202112 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 202125 202125 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 202166 202166 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1688 SAMTools SNP 202661 202661 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1688 SAMTools SNP 202688 202688 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1688 SAMTools SNP 202872 202872 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1688 SAMTools SNP 203054 203054 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 203434 203434 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 203440 203440 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 203470 203470 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1688 SAMTools SNP 203494 203494 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold1688 SAMTools SNP 204311 204311 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1688 SAMTools SNP 204578 204578 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold1688 SAMTools SNP 204617 204617 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1688 SAMTools SNP 204665 204665 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C24%2C0:45 scaffold1688 SAMTools SNP 204704 204704 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1688 SAMTools SNP 204873 204873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1688 SAMTools SNP 205626 205626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1688 SAMTools SNP 205685 205685 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.2%2C0.0038%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1688 SAMTools SNP 206047 206047 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1688 SAMTools SNP 206161 206161 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1688 SAMTools SNP 206522 206522 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1688 SAMTools SNP 206552 206552 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C242:99 scaffold1688 SAMTools SNP 206570 206570 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1688 SAMTools SNP 206909 206909 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 206957 206957 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C21%2C0:39 scaffold1688 SAMTools SNP 207001 207001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1688 SAMTools SNP 209360 209360 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold1688 SAMTools SNP 209459 209459 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1688 SAMTools SNP 209513 209513 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1688 SAMTools SNP 209531 209531 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold1688 SAMTools SNP 209537 209537 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold1688 SAMTools SNP 209829 209829 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C119:99 scaffold1688 SAMTools SNP 209832 209832 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C217:99 scaffold1688 SAMTools SNP 210905 210905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1688 SAMTools SNP 211349 211349 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1688 SAMTools SNP 211671 211671 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.048%2C0.1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C204:99 scaffold1688 SAMTools SNP 211731 211731 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1688 SAMTools SNP 211932 211932 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C236:99 scaffold1688 SAMTools SNP 212611 212611 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.48%2C0.41%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1688 SAMTools SNP 212921 212921 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.48%2C0.11%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1688 SAMTools SNP 212957 212957 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C11%3BMQ%3D49%3BFQ%3D160%3BPV4%3D0.11%2C0.0054%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1688 SAMTools SNP 214099 214099 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1688 SAMTools SNP 214196 214196 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1688 SAMTools SNP 217837 217837 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C7%3BMQ%3D40%3BFQ%3D4.77%3BPV4%3D0.021%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold1688 SAMTools SNP 218298 218298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1688 SAMTools SNP 218388 218388 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C2%3BMQ%3D43%3BFQ%3D58%3BPV4%3D0.64%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C147:88 scaffold1688 SAMTools SNP 220109 220109 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.067%2C1.2e-06%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C138:33 scaffold1688 SAMTools SNP 221839 221839 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C107:47 scaffold1688 SAMTools SNP 226249 226249 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold169 SAMTools SNP 33369 33369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2293%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1265%2C1%2C1023%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 35514 35514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C378%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 35589 35589 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C83%2C45%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D5e-09%2C1%2C1%2C2.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold169 SAMTools SNP 35893 35893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D547%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C477%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 36059 36059 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.37%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold169 SAMTools SNP 36060 36060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold169 SAMTools SNP 37876 37876 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C50%2C1%2C43%3BMQ%3D50%3BFQ%3D67%3BPV4%3D4.1e-10%2C1.1e-11%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold169 SAMTools SNP 37936 37936 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C105%2C0%2C31%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.12%2C3.1e-13%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold169 SAMTools SNP 38753 38753 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D662%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D427%2C4%2C228%2C3%3BMQ%3D49%3BFQ%3D180%3BPV4%3D0.7%2C0.0052%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold169 SAMTools SNP 38804 38804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C575%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 38870 38870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D668%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C583%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 38876 38876 151 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C111%2C0%2C179%2C91%2C176:99 scaffold169 SAMTools SNP 38891 38891 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C23%2C69%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-06%2C1%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 38921 38921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 39180 39180 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C220:30 scaffold169 SAMTools SNP 39182 39182 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.7e-30%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C167:51 scaffold169 SAMTools SNP 48074 48074 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C9%2C25%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.11%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold169 SAMTools SNP 48099 48099 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C63%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 49129 49129 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C33%2C0%2C13%3BMQ%3D48%3BFQ%3D38%3BPV4%3D2.2e-05%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold169 SAMTools SNP 49165 49165 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C19%2C19%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.81%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 49175 49175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C42%3BMQ%3D48%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold169 SAMTools SNP 49512 49512 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.041%2C0.051%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 67627 67627 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D18%3BPV4%3D1%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C63:48 scaffold169 SAMTools SNP 67833 67833 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold169 SAMTools SNP 68541 68541 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold169 SAMTools SNP 68576 68576 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold169 SAMTools SNP 69730 69730 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.036%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold169 SAMTools SNP 73627 73627 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.079%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C183:99 scaffold169 SAMTools SNP 73843 73843 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold169 SAMTools SNP 73855 73855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold169 SAMTools SNP 73879 73879 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold169 SAMTools SNP 74200 74200 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold169 SAMTools SNP 74202 74202 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.048%2C0.26%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C127:48 scaffold169 SAMTools SNP 74296 74296 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold169 SAMTools SNP 74591 74591 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold169 SAMTools SNP 74621 74621 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.0016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C77:80 scaffold169 SAMTools SNP 74624 74624 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold169 SAMTools SNP 74646 74646 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold169 SAMTools SNP 74924 74924 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C12%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.49%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C18:21 scaffold169 SAMTools SNP 75630 75630 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C0%2C20%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0002%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold169 SAMTools SNP 76063 76063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C98%2C0%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 76400 76400 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 76476 76476 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.33%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C243:99 scaffold169 SAMTools SNP 76551 76551 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C2.4e-29%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C245:99 scaffold169 SAMTools SNP 76572 76572 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C184:62 scaffold169 SAMTools SNP 76909 76909 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 76969 76969 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold169 SAMTools SNP 76981 76981 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.3%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold169 SAMTools SNP 77026 77026 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold169 SAMTools SNP 77374 77374 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold169 SAMTools SNP 78065 78065 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.31%2C0.062%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C210:99 scaffold169 SAMTools SNP 78109 78109 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold169 SAMTools SNP 78321 78321 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.044%2C0.37%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold169 SAMTools SNP 78389 78389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold169 SAMTools SNP 78589 78589 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold169 SAMTools SNP 79042 79042 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.14%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold169 SAMTools SNP 79066 79066 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold169 SAMTools SNP 79090 79090 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.29%2C0.069%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold169 SAMTools SNP 79159 79159 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold169 SAMTools SNP 79482 79482 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold169 SAMTools SNP 79523 79523 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.52%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold169 SAMTools SNP 80117 80117 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C19%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold169 SAMTools SNP 80261 80261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C7%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C2.1e-28%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 80315 80315 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00097%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold169 SAMTools SNP 80959 80959 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.3%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold169 SAMTools SNP 81027 81027 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.075%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 83531 83531 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold169 SAMTools SNP 83772 83772 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold169 SAMTools SNP 84432 84432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold169 SAMTools SNP 84490 84490 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C127:99 scaffold169 SAMTools SNP 84499 84499 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold169 SAMTools SNP 84641 84641 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold169 SAMTools SNP 85038 85038 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold169 SAMTools SNP 85341 85341 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold169 SAMTools SNP 85528 85528 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold169 SAMTools SNP 85568 85568 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C187:99 scaffold169 SAMTools SNP 86748 86748 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0051%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold169 SAMTools SNP 87285 87285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C25%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 87297 87297 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.13%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 87303 87303 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.25%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 87862 87862 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C14%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold169 SAMTools SNP 87914 87914 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.1%2C0.0029%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold169 SAMTools SNP 91094 91094 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.18%2C6.1e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold169 SAMTools SNP 91096 91096 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.048%2C7.8e-05%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C204:79 scaffold169 SAMTools SNP 91698 91698 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold169 SAMTools SNP 92136 92136 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold169 SAMTools SNP 92140 92140 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.011%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C64:67 scaffold169 SAMTools SNP 92466 92466 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold169 SAMTools SNP 96840 96840 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold169 SAMTools SNP 96860 96860 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.49%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C142:99 scaffold169 SAMTools SNP 96893 96893 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.22%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold169 SAMTools SNP 97283 97283 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold169 SAMTools SNP 97511 97511 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold169 SAMTools SNP 97516 97516 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold169 SAMTools SNP 99671 99671 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold169 SAMTools SNP 102344 102344 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold169 SAMTools SNP 102372 102372 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold169 SAMTools SNP 102695 102695 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 102750 102750 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C60%2C0:95 scaffold169 SAMTools SNP 131730 131730 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C33%2C0:63 scaffold169 SAMTools SNP 131933 131933 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold169 SAMTools SNP 147199 147199 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold169 SAMTools SNP 147435 147435 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C87%2C0:99 scaffold169 SAMTools SNP 158288 158288 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.051%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C181:92 scaffold169 SAMTools SNP 158497 158497 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold169 SAMTools SNP 158509 158509 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C200:99 scaffold169 SAMTools SNP 158640 158640 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold169 SAMTools SNP 159238 159238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold169 SAMTools SNP 159254 159254 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold169 SAMTools SNP 159355 159355 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold169 SAMTools SNP 162049 162049 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold169 SAMTools SNP 162593 162593 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 162647 162647 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 179827 179827 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 179871 179871 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 190840 190840 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold169 SAMTools SNP 191186 191186 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 194499 194499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold169 SAMTools SNP 194505 194505 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold169 SAMTools SNP 194997 194997 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold169 SAMTools SNP 195258 195258 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C8%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.71%2C1e-16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold169 SAMTools SNP 195424 195424 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold169 SAMTools SNP 239585 239585 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C22:25 scaffold169 SAMTools SNP 255078 255078 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 255183 255183 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold169 SAMTools SNP 277195 277195 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 279640 279640 57.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold169 SAMTools SNP 292750 292750 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold169 SAMTools SNP 295852 295852 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C9%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold169 SAMTools SNP 295879 295879 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C231:99 scaffold169 SAMTools SNP 296449 296449 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 296650 296650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 297072 297072 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.43%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold169 SAMTools SNP 297126 297126 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold169 SAMTools SNP 297761 297761 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold169 SAMTools SNP 297803 297803 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold169 SAMTools SNP 298811 298811 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0020%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C24:27 scaffold169 SAMTools SNP 300152 300152 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold169 SAMTools SNP 300725 300725 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold169 SAMTools SNP 301300 301300 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C216:99 scaffold169 SAMTools SNP 301408 301408 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold169 SAMTools SNP 308293 308293 47.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold169 SAMTools SNP 311732 311732 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold169 SAMTools SNP 312646 312646 59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C22%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D5.6e-06%2C2.5e-11%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold169 SAMTools SNP 315096 315096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C39%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold169 SAMTools SNP 316047 316047 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold169 SAMTools SNP 316491 316491 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold169 SAMTools SNP 316497 316497 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold169 SAMTools SNP 316616 316616 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold169 SAMTools SNP 316617 316617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold169 SAMTools SNP 318007 318007 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold169 SAMTools SNP 320327 320327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold169 SAMTools SNP 320330 320330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold169 SAMTools SNP 320649 320649 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold169 SAMTools SNP 325236 325236 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C13%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0049%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold169 SAMTools SNP 325338 325338 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.63%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C231:99 scaffold169 SAMTools SNP 328921 328921 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold169 SAMTools SNP 367655 367655 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.19%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold169 SAMTools SNP 368520 368520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 368532 368532 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 368902 368902 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold169 SAMTools SNP 370277 370277 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 370283 370283 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 370534 370534 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold169 SAMTools SNP 370555 370555 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold169 SAMTools SNP 370585 370585 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold169 SAMTools SNP 372543 372543 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold169 SAMTools SNP 372845 372845 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold169 SAMTools SNP 372878 372878 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 372971 372971 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C2.4e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold169 SAMTools SNP 373080 373080 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold169 SAMTools SNP 373352 373352 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold169 SAMTools SNP 373412 373412 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold169 SAMTools SNP 373737 373737 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold169 SAMTools SNP 374156 374156 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold169 SAMTools SNP 374885 374885 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold169 SAMTools SNP 391544 391544 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold169 SAMTools SNP 400834 400834 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold169 SAMTools SNP 415183 415183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 415388 415388 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold169 SAMTools SNP 433551 433551 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C3%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.039%2C3.4e-06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold169 SAMTools SNP 433591 433591 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.083%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold169 SAMTools SNP 438360 438360 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold169 SAMTools SNP 438481 438481 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold169 SAMTools SNP 441016 441016 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 441555 441555 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 441630 441630 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 441669 441669 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold169 SAMTools SNP 442048 442048 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold169 SAMTools SNP 442087 442087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold169 SAMTools SNP 442486 442486 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 442525 442525 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 443317 443317 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold169 SAMTools SNP 443874 443874 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.048%2C0.00091%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C139:61 scaffold169 SAMTools SNP 443950 443950 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold169 SAMTools SNP 444022 444022 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold169 SAMTools SNP 444308 444308 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 444383 444383 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold169 SAMTools SNP 444940 444940 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold169 SAMTools SNP 445132 445132 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold169 SAMTools SNP 445186 445186 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold169 SAMTools SNP 445366 445366 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C39%2C0:75 scaffold169 SAMTools SNP 445429 445429 134 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C93%2C0%2C161%2C60%2C155:99 scaffold169 SAMTools SNP 445623 445623 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold169 SAMTools SNP 445879 445879 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold169 SAMTools SNP 445993 445993 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C9%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.015%2C3.7e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold169 SAMTools SNP 446347 446347 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C19%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.22%2C1.3e-33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold169 SAMTools SNP 447133 447133 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.9e-27%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C228:54 scaffold169 SAMTools SNP 562773 562773 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold169 SAMTools SNP 564997 564997 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold169 SAMTools SNP 565340 565340 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold169 SAMTools SNP 583351 583351 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold169 SAMTools SNP 583357 583357 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold169 SAMTools SNP 584532 584532 15.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.0067%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C5%2C0:8 scaffold169 SAMTools SNP 589611 589611 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.026%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold169 SAMTools SNP 601732 601732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold169 SAMTools SNP 637820 637820 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C71:68 scaffold169 SAMTools SNP 645155 645155 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold169 SAMTools SNP 663327 663327 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold169 SAMTools SNP 663341 663341 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.22%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C247:99 scaffold169 SAMTools SNP 663383 663383 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C253:99 scaffold169 SAMTools SNP 663659 663659 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C37%2C31%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 665467 665467 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C180%2C1%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 666072 666072 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold169 SAMTools SNP 666292 666292 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C19%2C7%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00017%2C3.3e-22%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold169 SAMTools SNP 666855 666855 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.63%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold169 SAMTools SNP 666910 666910 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C17%2C6%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.7%2C0.03%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold169 SAMTools SNP 666915 666915 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C7%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold169 SAMTools SNP 667439 667439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold169 SAMTools SNP 667454 667454 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C22%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 667987 667987 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C63%2C2%2C11%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.02%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold169 SAMTools SNP 668011 668011 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C78%2C1%2C17%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold169 SAMTools SNP 668616 668616 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C17%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C6.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold169 SAMTools SNP 670188 670188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold169 SAMTools SNP 670206 670206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold169 SAMTools SNP 670221 670221 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold169 SAMTools SNP 670417 670417 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C26%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold169 SAMTools SNP 670570 670570 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C61%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold169 SAMTools SNP 670633 670633 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C105%2C0:99 scaffold169 SAMTools SNP 675822 675822 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold169 SAMTools SNP 688548 688548 4.75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold169 SAMTools SNP 777050 777050 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D20.9%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C62:51 scaffold1690 SAMTools SNP 557 557 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1690 SAMTools SNP 13111 13111 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C71:46 scaffold1690 SAMTools SNP 13214 13214 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1690 SAMTools SNP 13892 13892 8.22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1690 SAMTools SNP 15624 15624 19.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1690 SAMTools SNP 16714 16714 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1690 SAMTools SNP 17118 17118 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1690 SAMTools SNP 17216 17216 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1690 SAMTools SNP 17391 17391 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1690 SAMTools SNP 17677 17677 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold1690 SAMTools SNP 18976 18976 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1690 SAMTools SNP 20633 20633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1690 SAMTools SNP 22625 22625 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1690 SAMTools SNP 22642 22642 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.017%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1690 SAMTools SNP 22718 22718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1690 SAMTools SNP 23069 23069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1690 SAMTools SNP 23120 23120 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1690 SAMTools SNP 26020 26020 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.28%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1690 SAMTools SNP 26530 26530 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C42%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1690 SAMTools SNP 26722 26722 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.22%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C234:99 scaffold1690 SAMTools SNP 26735 26735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1690 SAMTools SNP 26774 26774 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1690 SAMTools SNP 26783 26783 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C16%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00047%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1690 SAMTools SNP 27288 27288 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1690 SAMTools SNP 27652 27652 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D3%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1690 SAMTools SNP 27748 27748 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1690 SAMTools SNP 27775 27775 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C229:99 scaffold1690 SAMTools SNP 27799 27799 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1690 SAMTools SNP 27802 27802 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C64:67 scaffold1690 SAMTools SNP 28309 28309 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1690 SAMTools SNP 28324 28324 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0021%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1690 SAMTools SNP 28327 28327 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1690 SAMTools SNP 29809 29809 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C0%2C17%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.32%2C8.9e-06%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1690 SAMTools SNP 30047 30047 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.52%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1690 SAMTools SNP 30131 30131 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1690 SAMTools SNP 30444 30444 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1690 SAMTools SNP 30510 30510 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C9.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C217:73 scaffold1690 SAMTools SNP 30589 30589 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1690 SAMTools SNP 31069 31069 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C80:79 scaffold1690 SAMTools SNP 31083 31083 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.4%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1690 SAMTools SNP 31101 31101 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1690 SAMTools SNP 31147 31147 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1690 SAMTools SNP 31307 31307 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.17%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1690 SAMTools SNP 31345 31345 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C48%2C0%2C24%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1690 SAMTools SNP 32070 32070 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C0%2C25%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1690 SAMTools SNP 32357 32357 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1690 SAMTools SNP 32801 32801 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0:57 scaffold1690 SAMTools SNP 32838 32838 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C27%2C0:51 scaffold1690 SAMTools SNP 32877 32877 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1690 SAMTools SNP 33718 33718 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1690 SAMTools SNP 33766 33766 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1690 SAMTools SNP 33817 33817 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1690 SAMTools SNP 36336 36336 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.22%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1690 SAMTools SNP 40176 40176 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D43%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1690 SAMTools SNP 40188 40188 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C3%3BMQ%3D45%3BFQ%3D18.1%3BPV4%3D0.34%2C0.32%2C7.5e-09%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1690 SAMTools SNP 40191 40191 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D43%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1690 SAMTools SNP 41384 41384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1690 SAMTools SNP 41702 41702 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1690 SAMTools SNP 42142 42142 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1690 SAMTools SNP 42171 42171 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1690 SAMTools SNP 45021 45021 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C11%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1.8e-05%2C7.1e-08%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1692 SAMTools SNP 40719 40719 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1692 SAMTools SNP 40750 40750 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1692 SAMTools SNP 41058 41058 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1692 SAMTools SNP 41096 41096 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1692 SAMTools SNP 43736 43736 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 43995 43995 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1692 SAMTools SNP 44068 44068 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold1692 SAMTools SNP 45896 45896 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold1692 SAMTools SNP 45915 45915 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1692 SAMTools SNP 45927 45927 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1692 SAMTools SNP 46285 46285 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1692 SAMTools SNP 46303 46303 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1692 SAMTools SNP 46366 46366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 46381 46381 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 47176 47176 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1692 SAMTools SNP 48026 48026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1692 SAMTools SNP 48044 48044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1692 SAMTools SNP 48133 48133 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1692 SAMTools SNP 48149 48149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1692 SAMTools SNP 48637 48637 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1692 SAMTools SNP 48643 48643 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1692 SAMTools SNP 48695 48695 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1692 SAMTools SNP 49005 49005 144 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C47%2C35%2C171%2C0%2C168:21 scaffold1692 SAMTools SNP 49265 49265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1692 SAMTools SNP 49326 49326 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C110:89 scaffold1692 SAMTools SNP 49346 49346 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1692 SAMTools SNP 49474 49474 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1692 SAMTools SNP 49610 49610 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 49615 49615 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 59563 59563 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 62342 62342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1692 SAMTools SNP 63231 63231 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C16%2C79%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1692 SAMTools SNP 63276 63276 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C63%2C38%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C0.31%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1692 SAMTools SNP 63669 63669 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1692 SAMTools SNP 63693 63693 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C64%2C11%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1692 SAMTools SNP 64308 64308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C12%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1692 SAMTools SNP 71710 71710 74.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold1692 SAMTools SNP 71734 71734 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C13%2C15%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C5.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1692 SAMTools SNP 71868 71868 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1692 SAMTools SNP 71953 71953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1692 SAMTools SNP 72481 72481 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1692 SAMTools SNP 72487 72487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1692 SAMTools SNP 75924 75924 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1696 SAMTools SNP 11175 11175 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 11978 11978 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 12249 12249 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 19801 19801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 19920 19920 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 29628 29628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 29673 29673 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 29679 29679 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1696 SAMTools SNP 30401 30401 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1696 SAMTools SNP 37367 37367 62.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold1696 SAMTools SNP 37622 37622 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1696 SAMTools SNP 57863 57863 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1696 SAMTools SNP 57864 57864 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1697 SAMTools SNP 28654 28654 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1697 SAMTools SNP 30061 30061 59.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1697 SAMTools SNP 35407 35407 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1697 SAMTools SNP 35445 35445 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1697 SAMTools SNP 36256 36256 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1697 SAMTools SNP 39707 39707 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1697 SAMTools SNP 40227 40227 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1697 SAMTools SNP 40301 40301 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1697 SAMTools SNP 40419 40419 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1697 SAMTools SNP 40470 40470 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1697 SAMTools SNP 41484 41484 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1697 SAMTools SNP 41492 41492 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1697 SAMTools SNP 41583 41583 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1697 SAMTools SNP 43929 43929 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold1697 SAMTools SNP 63039 63039 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold1697 SAMTools SNP 63097 63097 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1697 SAMTools SNP 63131 63131 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1697 SAMTools SNP 63957 63957 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1697 SAMTools SNP 63974 63974 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1697 SAMTools SNP 67371 67371 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1697 SAMTools SNP 67413 67413 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1697 SAMTools SNP 73352 73352 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C24%2C0:45 scaffold1697 SAMTools SNP 88481 88481 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold1697 SAMTools SNP 90034 90034 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C25%2C5%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.39%2C0.49%2C1%2C2.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1697 SAMTools SNP 90049 90049 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C32%2C14%3BMQ%3D50%3BFQ%3D106%3BPV4%3D4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold1697 SAMTools SNP 91068 91068 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C40:30 scaffold1697 SAMTools SNP 91247 91247 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1697 SAMTools SNP 91666 91666 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C279%2C18%2C165%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1697 SAMTools SNP 91739 91739 30.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1697 SAMTools SNP 92096 92096 27.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold1697 SAMTools SNP 92943 92943 87.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C21%2C0:39 scaffold1697 SAMTools SNP 92969 92969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1697 SAMTools SNP 93843 93843 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C163%2C137%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.93%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1697 SAMTools SNP 93936 93936 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D804%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D389%2C174%2C93%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-05%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1697 SAMTools SNP 93942 93942 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D781%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C108%2C378%2C162%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-06%2C0.002%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1697 SAMTools SNP 93947 93947 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D749%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D373%2C166%2C96%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1697 SAMTools SNP 96959 96959 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1697 SAMTools SNP 97623 97623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C492%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1697 SAMTools SNP 104236 104236 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1697 SAMTools SNP 104237 104237 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1697 SAMTools SNP 136791 136791 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C33%2C0:63 scaffold1698 SAMTools SNP 9792 9792 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold1698 SAMTools SNP 103064 103064 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 103068 103068 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1698 SAMTools SNP 103093 103093 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1698 SAMTools SNP 103605 103605 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1698 SAMTools SNP 103643 103643 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1698 SAMTools SNP 103797 103797 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1698 SAMTools SNP 113281 113281 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1698 SAMTools SNP 120985 120985 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C254:80 scaffold1698 SAMTools SNP 122003 122003 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1698 SAMTools SNP 133428 133428 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C18%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.42%2C0.068%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1698 SAMTools SNP 137022 137022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1698 SAMTools SNP 141345 141345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C197%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1698 SAMTools SNP 144015 144015 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1698 SAMTools SNP 144497 144497 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C160%2C157%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D7.1e-68%2C1.3e-120%2C1%2C8.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1698 SAMTools SNP 145378 145378 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1698 SAMTools SNP 145401 145401 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 148458 148458 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C171%2C0%2C303%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1698 SAMTools SNP 148486 148486 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1698 SAMTools SNP 149956 149956 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1698 SAMTools SNP 151484 151484 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1698 SAMTools SNP 151494 151494 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1698 SAMTools SNP 152986 152986 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C90%2C0:99 scaffold1698 SAMTools SNP 155238 155238 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1698 SAMTools SNP 155366 155366 30 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C26%2C17%2C59%2C0%2C56:16 scaffold1698 SAMTools SNP 157418 157418 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C6%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.094%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1698 SAMTools SNP 157466 157466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C4%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1698 SAMTools SNP 159061 159061 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C19%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C251:99 scaffold1698 SAMTools SNP 160325 160325 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.48%2C0.098%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1698 SAMTools SNP 160967 160967 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C23%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 160997 160997 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C32%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 168108 168108 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1698 SAMTools SNP 168988 168988 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 169123 169123 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold1698 SAMTools SNP 169882 169882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1698 SAMTools SNP 271882 271882 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 273717 273717 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 274584 274584 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1698 SAMTools SNP 275203 275203 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1698 SAMTools SNP 276266 276266 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1698 SAMTools SNP 433876 433876 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C36%2C0:69 scaffold1698 SAMTools SNP 434038 434038 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C4.7e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1698 SAMTools SNP 434182 434182 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.00098%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C156:99 scaffold1698 SAMTools SNP 434201 434201 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.47%2C9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C204:85 scaffold1698 SAMTools SNP 435583 435583 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1698 SAMTools SNP 436578 436578 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 436658 436658 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1698 SAMTools SNP 436692 436692 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C150:99 scaffold1698 SAMTools SNP 439546 439546 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1698 SAMTools SNP 439569 439569 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C41:44 scaffold1698 SAMTools SNP 439646 439646 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1698 SAMTools SNP 442999 442999 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 443873 443873 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1698 SAMTools SNP 443973 443973 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1698 SAMTools SNP 446619 446619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1698 SAMTools SNP 449613 449613 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1698 SAMTools SNP 452045 452045 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1698 SAMTools SNP 453335 453335 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1698 SAMTools SNP 458041 458041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1698 SAMTools SNP 462479 462479 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 478930 478930 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1698 SAMTools SNP 478960 478960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1698 SAMTools SNP 478981 478981 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1698 SAMTools SNP 479008 479008 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1698 SAMTools SNP 480208 480208 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1698 SAMTools SNP 480238 480238 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.27%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1698 SAMTools SNP 480244 480244 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1698 SAMTools SNP 480247 480247 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.11%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold1698 SAMTools SNP 481281 481281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1698 SAMTools SNP 481583 481583 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C18%3BMQ%3D48%3BFQ%3D204%3BPV4%3D0.0035%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1698 SAMTools SNP 482645 482645 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.091%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C164:99 scaffold1698 SAMTools SNP 506309 506309 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1698 SAMTools SNP 506339 506339 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1698 SAMTools SNP 506364 506364 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C49:52 scaffold1698 SAMTools SNP 506583 506583 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1698 SAMTools SNP 506621 506621 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1698 SAMTools SNP 506954 506954 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00012%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold1698 SAMTools SNP 507413 507413 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C0%3BMQ%3D43%3BFQ%3D39%3BPV4%3D0.028%2C1%2C0.00083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C235:69 scaffold1698 SAMTools SNP 507416 507416 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D43%3BFQ%3D36%3BPV4%3D0.044%2C1%2C0.02%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C249:66 scaffold1698 SAMTools SNP 509315 509315 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C197:28 scaffold1698 SAMTools SNP 509424 509424 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.9e-12%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C250:37 scaffold1698 SAMTools SNP 509734 509734 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1698 SAMTools SNP 512229 512229 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D37%3BFQ%3D47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C74:77 scaffold1698 SAMTools SNP 512515 512515 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D0.33%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold1698 SAMTools SNP 512529 512529 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold1698 SAMTools SNP 513119 513119 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1698 SAMTools SNP 513161 513161 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1698 SAMTools SNP 517261 517261 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 517493 517493 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 520731 520731 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1698 SAMTools SNP 521527 521527 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 522030 522030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1698 SAMTools SNP 522060 522060 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold1698 SAMTools SNP 522595 522595 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C214:99 scaffold1698 SAMTools SNP 522596 522596 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.46%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C214:99 scaffold1698 SAMTools SNP 522607 522607 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1698 SAMTools SNP 522655 522655 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1698 SAMTools SNP 523360 523360 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1698 SAMTools SNP 523731 523731 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.14%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C229:83 scaffold1698 SAMTools SNP 523741 523741 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold1698 SAMTools SNP 523968 523968 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1698 SAMTools SNP 523995 523995 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1698 SAMTools SNP 527764 527764 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C229:99 scaffold1698 SAMTools SNP 527800 527800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.6%2C0.055%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1698 SAMTools SNP 528085 528085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1698 SAMTools SNP 528383 528383 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1698 SAMTools SNP 529345 529345 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1698 SAMTools SNP 529372 529372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1698 SAMTools SNP 529747 529747 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold1698 SAMTools SNP 529756 529756 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1698 SAMTools SNP 529783 529783 80.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold1698 SAMTools SNP 529831 529831 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C32:35 scaffold1698 SAMTools SNP 530245 530245 10.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold1698 SAMTools SNP 530617 530617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1698 SAMTools SNP 530650 530650 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1698 SAMTools SNP 530683 530683 46.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1698 SAMTools SNP 531073 531073 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1698 SAMTools SNP 531075 531075 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1698 SAMTools SNP 532142 532142 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C145:99 scaffold1698 SAMTools SNP 532145 532145 140 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C82%2C255%2C0%2C251:75 scaffold1698 SAMTools SNP 532353 532353 22.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1698 SAMTools SNP 537788 537788 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1698 SAMTools SNP 539497 539497 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1698 SAMTools SNP 541559 541559 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C32:35 scaffold1698 SAMTools SNP 543684 543684 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 543765 543765 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1698 SAMTools SNP 543780 543780 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1698 SAMTools SNP 544079 544079 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.083%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold1698 SAMTools SNP 544175 544175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1698 SAMTools SNP 544705 544705 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 544907 544907 39.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1698 SAMTools SNP 547038 547038 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C34%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.45%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 547046 547046 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C33%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.039%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 547573 547573 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.28%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1698 SAMTools SNP 547579 547579 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 547591 547591 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00095%2C0.46%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1698 SAMTools SNP 548074 548074 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C18%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1698 SAMTools SNP 549159 549159 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C23%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1698 SAMTools SNP 550438 550438 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1698 SAMTools SNP 550525 550525 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1698 SAMTools SNP 551426 551426 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 551471 551471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 551498 551498 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1698 SAMTools SNP 552035 552035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.077%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1698 SAMTools SNP 552059 552059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 552761 552761 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0047%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C188:58 scaffold1698 SAMTools SNP 553229 553229 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1698 SAMTools SNP 553530 553530 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C48%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1698 SAMTools SNP 554737 554737 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C24%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1698 SAMTools SNP 586187 586187 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1698 SAMTools SNP 586200 586200 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 887 887 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 920 920 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 1024 1024 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C10%2C45%2C0%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D3.4e-07%2C4e-22%2C0.14%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1699 SAMTools SNP 1365 1365 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C19%2C10%3BMQ%3D45%3BFQ%3D179%3BPV4%3D2.3e-11%2C0.24%2C0.0035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C252:99 scaffold1699 SAMTools SNP 1385 1385 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D48%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1699 SAMTools SNP 1426 1426 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C57%2C0:99 scaffold1699 SAMTools SNP 1849 1849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C0%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1699 SAMTools SNP 1885 1885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1699 SAMTools SNP 1914 1914 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1699 SAMTools SNP 1917 1917 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1699 SAMTools SNP 2421 2421 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1699 SAMTools SNP 2560 2560 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1699 SAMTools SNP 2586 2586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1699 SAMTools SNP 2826 2826 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1699 SAMTools SNP 6065 6065 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1699 SAMTools SNP 9742 9742 33.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1699 SAMTools SNP 9825 9825 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1699 SAMTools SNP 9864 9864 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1699 SAMTools SNP 11093 11093 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D1%2C0.0029%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C38:41 scaffold1699 SAMTools SNP 11347 11347 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C0%2C69%3BMQ%3D29%3BFQ%3D166%3BPV4%3D0.038%2C1%2C0.0016%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1699 SAMTools SNP 11384 11384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C123%3BMQ%3D27%3BFQ%3D-282%3BPV4%3D0.032%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 11827 11827 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1699 SAMTools SNP 11891 11891 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C4.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C222:99 scaffold1699 SAMTools SNP 11905 11905 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1699 SAMTools SNP 11917 11917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1699 SAMTools SNP 12914 12914 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C0%2C30%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1699 SAMTools SNP 12992 12992 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold1699 SAMTools SNP 13461 13461 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1699 SAMTools SNP 13523 13523 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1699 SAMTools SNP 13806 13806 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 28703 28703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1699 SAMTools SNP 32463 32463 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1699 SAMTools SNP 33005 33005 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C15%2C50%2C0%3BMQ%3D49%3BFQ%3D90%3BPV4%3D0.0026%2C8e-14%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1699 SAMTools SNP 33098 33098 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 46423 46423 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1699 SAMTools SNP 46456 46456 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1699 SAMTools SNP 46597 46597 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.079%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1699 SAMTools SNP 46965 46965 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1699 SAMTools SNP 47434 47434 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1699 SAMTools SNP 52528 52528 21.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1699 SAMTools SNP 52579 52579 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D40%3BFQ%3D-36%3BPV4%3D1%2C0.13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C9%2C0:16 scaffold1699 SAMTools SNP 53375 53375 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1699 SAMTools SNP 53423 53423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C97%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 54349 54349 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1699 SAMTools SNP 54415 54415 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C27%2C0:51 scaffold1699 SAMTools SNP 54439 54439 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold1699 SAMTools SNP 54526 54526 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C1%2C18%2C1%3BMQ%3D35%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C8%2C0:14 scaffold1699 SAMTools SNP 54753 54753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D41%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1699 SAMTools SNP 54828 54828 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C18%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C108%2C0:99 scaffold1699 SAMTools SNP 54903 54903 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.11%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1699 SAMTools SNP 54918 54918 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1699 SAMTools SNP 55193 55193 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold1699 SAMTools SNP 55202 55202 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1699 SAMTools SNP 71960 71960 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D20%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C60%2C0:99 scaffold1699 SAMTools SNP 72805 72805 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 82191 82191 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 82247 82247 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1699 SAMTools SNP 96492 96492 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C0.47%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C34:37 scaffold1699 SAMTools SNP 96525 96525 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1699 SAMTools SNP 98739 98739 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0:57 scaffold1699 SAMTools SNP 98825 98825 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1699 SAMTools SNP 101560 101560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C7%2C13%2C109%3BMQ%3D37%3BFQ%3D28%3BPV4%3D7.2e-37%2C0.22%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold1699 SAMTools SNP 132737 132737 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C86%2C111%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1699 SAMTools SNP 133004 133004 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C5%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.23%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1699 SAMTools SNP 133016 133016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1699 SAMTools SNP 133061 133061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold1699 SAMTools SNP 133122 133122 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C45%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1699 SAMTools SNP 133683 133683 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C246:54 scaffold1699 SAMTools SNP 133817 133817 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C52%2C171%2C62%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.66%2C1.8e-293%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1699 SAMTools SNP 135451 135451 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1699 SAMTools SNP 159824 159824 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1699 SAMTools SNP 161033 161033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1699 SAMTools SNP 162596 162596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1699 SAMTools SNP 184910 184910 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C239%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold1699 SAMTools SNP 184919 184919 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1699 SAMTools SNP 184979 184979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 185530 185530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C217%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 185548 185548 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1699 SAMTools SNP 189526 189526 22.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1699 SAMTools SNP 190974 190974 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold170 SAMTools SNP 2010 2010 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C218:58 scaffold170 SAMTools SNP 3384 3384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.032%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold170 SAMTools SNP 5494 5494 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold170 SAMTools SNP 11282 11282 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold170 SAMTools SNP 20643 20643 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.37%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold170 SAMTools SNP 20727 20727 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold170 SAMTools SNP 20886 20886 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold170 SAMTools SNP 20926 20926 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0014%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold170 SAMTools SNP 20933 20933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0023%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold170 SAMTools SNP 21573 21573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold170 SAMTools SNP 21988 21988 54.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold170 SAMTools SNP 22080 22080 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.011%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold170 SAMTools SNP 27289 27289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C19%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.019%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 27301 27301 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C11%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 27357 27357 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 29161 29161 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C8%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.3%2C8.3e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold170 SAMTools SNP 29969 29969 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C9.7e-10%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold170 SAMTools SNP 33503 33503 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C4.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C209:99 scaffold170 SAMTools SNP 33581 33581 72 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D429%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C255%2C0%2C88%2C255%2C85:99 scaffold170 SAMTools SNP 33691 33691 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1878%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D510%2C414%2C936%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D6.4e-153%2C0%2C1%2C9.7e-99;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold170 SAMTools SNP 34367 34367 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C3%2C38%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-52%2C0.0032%2C1%2C2.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 34382 34382 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C20%2C30%2C282%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-69%2C1%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 34444 34444 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold170 SAMTools SNP 34847 34847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D811%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C49%2C331%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 34892 34892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D896%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C218%2C156%2C286%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-06%2C1.3e-05%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 35295 35295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C79%2C109%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 35346 35346 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 35676 35676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C119%2C24%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 35773 35773 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C119%2C82%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 36139 36139 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C160%2C98%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D4.8e-20%2C1%2C1%2C4.6e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold170 SAMTools SNP 36189 36189 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C94%2C23%2C62%3BMQ%3D50%3BFQ%3D181%3BPV4%3D3e-05%2C1.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold170 SAMTools SNP 36316 36316 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C71%2C156%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 36558 36558 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C116%2C13%2C19%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold170 SAMTools SNP 36606 36606 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C158%2C209%2C174%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1.5e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 36779 36779 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold170 SAMTools SNP 37051 37051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C288%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 37099 37099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 37337 37337 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C103%2C41%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 37379 37379 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C41%2C28%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1.4e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold170 SAMTools SNP 38382 38382 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold170 SAMTools SNP 38578 38578 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C180:99 scaffold170 SAMTools SNP 38581 38581 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C197:54 scaffold170 SAMTools SNP 38645 38645 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold170 SAMTools SNP 39524 39524 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C130%2C108%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D5.1e-06%2C0.00037%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold170 SAMTools SNP 39554 39554 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C85%2C213%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.49%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 39776 39776 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 40100 40100 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C33%2C32%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 40154 40154 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C16%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold170 SAMTools SNP 40712 40712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D537%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C201%2C62%2C179%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 40724 40724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C292%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 40737 40737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C160%2C15%2C140%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 41444 41444 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C35%2C74%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-08%2C0.45%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 41561 41561 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C2%2C69%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C0.46%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 41610 41610 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C22%2C32%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.13%2C1%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold170 SAMTools SNP 41628 41628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C63%2C53%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C2.6e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 41922 41922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 41954 41954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 43147 43147 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C171%2C14%2C14%3BMQ%3D50%3BFQ%3D80%3BPV4%3D2.2e-06%2C1%2C1%2C3.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold170 SAMTools SNP 43410 43410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 43416 43416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C10%2C16%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-16%2C1%2C1%2C3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 43488 43488 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C39%2C75%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 46288 46288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold170 SAMTools SNP 46354 46354 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold170 SAMTools SNP 46366 46366 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold170 SAMTools SNP 46441 46441 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold170 SAMTools SNP 46453 46453 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold170 SAMTools SNP 47210 47210 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold170 SAMTools SNP 47961 47961 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold170 SAMTools SNP 48102 48102 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C82%2C27%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.026%2C1%2C1%2C6.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold170 SAMTools SNP 48130 48130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 49323 49323 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C11%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold170 SAMTools SNP 49341 49341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D527%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C285%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 50929 50929 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold170 SAMTools SNP 51582 51582 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold170 SAMTools SNP 51586 51586 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold170 SAMTools SNP 52529 52529 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D488%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold170 SAMTools SNP 52664 52664 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C399%2C49%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 53370 53370 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C4%2C189%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D5.6e-13%2C6.3e-100%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C255%2C0:99 scaffold170 SAMTools SNP 53683 53683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C380%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 54003 54003 109 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C24%2C0%2C139%2C11%2C136:45 scaffold170 SAMTools SNP 54261 54261 16.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold170 SAMTools SNP 54396 54396 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.29%2C8.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C175:56 scaffold170 SAMTools SNP 54599 54599 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C291%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold170 SAMTools SNP 54750 54750 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C58%2C14%2C18%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.019%2C7.5e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold170 SAMTools SNP 55055 55055 46.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold170 SAMTools SNP 56338 56338 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C326%2C9%2C267%3BMQ%3D29%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold170 SAMTools SNP 59996 59996 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold170 SAMTools SNP 60655 60655 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold170 SAMTools SNP 100808 100808 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold170 SAMTools SNP 100814 100814 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold170 SAMTools SNP 113446 113446 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold170 SAMTools SNP 114039 114039 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold170 SAMTools SNP 127804 127804 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold170 SAMTools SNP 178434 178434 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1700 SAMTools SNP 121248 121248 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1700 SAMTools SNP 122480 122480 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1700 SAMTools SNP 129299 129299 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1700 SAMTools SNP 152477 152477 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C8.6e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C231:57 scaffold1700 SAMTools SNP 152480 152480 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C184:51 scaffold1700 SAMTools SNP 153190 153190 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C54%2C0:99 scaffold1700 SAMTools SNP 153412 153412 89.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C18%2C0:33 scaffold1700 SAMTools SNP 154163 154163 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1700 SAMTools SNP 154190 154190 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1700 SAMTools SNP 154430 154430 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1700 SAMTools SNP 154451 154451 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 154490 154490 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1700 SAMTools SNP 154492 154492 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1700 SAMTools SNP 154773 154773 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1700 SAMTools SNP 155007 155007 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C3.9e-10%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1700 SAMTools SNP 155223 155223 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C3.1e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C210:81 scaffold1700 SAMTools SNP 155304 155304 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00084%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C77:59 scaffold1700 SAMTools SNP 155361 155361 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C10%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.16%2C2.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1700 SAMTools SNP 155412 155412 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.1%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1700 SAMTools SNP 155498 155498 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.34%2C2.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1700 SAMTools SNP 155955 155955 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C84%2C0:99 scaffold1700 SAMTools SNP 156018 156018 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.024%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1700 SAMTools SNP 156579 156579 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C7%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.67%2C4.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1700 SAMTools SNP 157785 157785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 158371 158371 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.6%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1700 SAMTools SNP 158640 158640 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C2.5e-07%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C247:65 scaffold1700 SAMTools SNP 158679 158679 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1700 SAMTools SNP 158822 158822 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C4.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C132:48 scaffold1700 SAMTools SNP 158898 158898 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C8%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C184%2C0:99 scaffold1700 SAMTools SNP 159532 159532 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C14%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.39%2C1.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C123:71 scaffold1700 SAMTools SNP 160876 160876 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1700 SAMTools SNP 160958 160958 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1700 SAMTools SNP 174232 174232 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1700 SAMTools SNP 175733 175733 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 177368 177368 24.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1700 SAMTools SNP 177554 177554 64.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold1700 SAMTools SNP 276543 276543 85.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1700 SAMTools SNP 277045 277045 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.2%2C3.7e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C244:47 scaffold1700 SAMTools SNP 277233 277233 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1700 SAMTools SNP 278858 278858 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1700 SAMTools SNP 280634 280634 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 282515 282515 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1700 SAMTools SNP 289568 289568 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.43%2C0.022%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C125:37 scaffold1700 SAMTools SNP 289946 289946 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1700 SAMTools SNP 289977 289977 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C223:99 scaffold1700 SAMTools SNP 290018 290018 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 293150 293150 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C0%2C168%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C5.7e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1700 SAMTools SNP 294769 294769 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 295668 295668 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1449%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C718%2C1%2C723%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 295689 295689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1049%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1035%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1700 SAMTools SNP 296413 296413 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1700 SAMTools SNP 301705 301705 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1700 SAMTools SNP 301735 301735 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1700 SAMTools SNP 302077 302077 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.54%2C0.00069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1700 SAMTools SNP 302092 302092 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1700 SAMTools SNP 302524 302524 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1700 SAMTools SNP 302554 302554 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 302572 302572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 302605 302605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.0016%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 302611 302611 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1700 SAMTools SNP 303283 303283 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1700 SAMTools SNP 305671 305671 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0009%2C0.018%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 306445 306445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1700 SAMTools SNP 308421 308421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1700 SAMTools SNP 314166 314166 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 315907 315907 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1700 SAMTools SNP 315949 315949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1700 SAMTools SNP 315952 315952 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1700 SAMTools SNP 318198 318198 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1700 SAMTools SNP 318228 318228 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.25%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1700 SAMTools SNP 318369 318369 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 319223 319223 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 321664 321664 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1700 SAMTools SNP 324496 324496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1700 SAMTools SNP 324520 324520 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C58%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 324643 324643 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold1700 SAMTools SNP 328406 328406 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C54%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 328430 328430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C83%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 328445 328445 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C19%2C22%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.78%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1700 SAMTools SNP 328806 328806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 328884 328884 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1700 SAMTools SNP 328913 328913 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1700 SAMTools SNP 329197 329197 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1700 SAMTools SNP 329210 329210 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1700 SAMTools SNP 329252 329252 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 329309 329309 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1700 SAMTools SNP 329516 329516 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1700 SAMTools SNP 329574 329574 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1700 SAMTools SNP 329671 329671 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1700 SAMTools SNP 329706 329706 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1700 SAMTools SNP 330120 330120 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1700 SAMTools SNP 330132 330132 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1700 SAMTools SNP 330174 330174 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1700 SAMTools SNP 332489 332489 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1700 SAMTools SNP 332736 332736 198 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C24%2C234%2C0%2C228:45 scaffold1700 SAMTools SNP 332777 332777 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1700 SAMTools SNP 334569 334569 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1700 SAMTools SNP 334585 334585 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C0.083%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1700 SAMTools SNP 334612 334612 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 334875 334875 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1700 SAMTools SNP 335223 335223 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 335241 335241 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C148:99 scaffold1700 SAMTools SNP 335420 335420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1700 SAMTools SNP 335450 335450 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1700 SAMTools SNP 335943 335943 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1700 SAMTools SNP 336598 336598 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.33%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1700 SAMTools SNP 336631 336631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 336655 336655 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.2%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1700 SAMTools SNP 336658 336658 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1700 SAMTools SNP 336787 336787 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C20%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C246:99 scaffold1700 SAMTools SNP 337101 337101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1700 SAMTools SNP 337126 337126 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1700 SAMTools SNP 338519 338519 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C235:99 scaffold1700 SAMTools SNP 339545 339545 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C66%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00098%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1700 SAMTools SNP 339596 339596 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C12%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1700 SAMTools SNP 339698 339698 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1700 SAMTools SNP 339701 339701 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D9.94%3BPV4%3D1%2C0.011%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C40:39 scaffold1703 SAMTools SNP 2715 2715 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1703 SAMTools SNP 28069 28069 28.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1703 SAMTools SNP 64834 64834 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 64957 64957 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 65088 65088 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.00027%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C71:30 scaffold1703 SAMTools SNP 71069 71069 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1703 SAMTools SNP 81871 81871 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1703 SAMTools SNP 93348 93348 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1703 SAMTools SNP 121196 121196 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1703 SAMTools SNP 122271 122271 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 122315 122315 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1703 SAMTools SNP 122334 122334 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 143089 143089 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1703 SAMTools SNP 163163 163163 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 167143 167143 6.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C1%2C0:4 scaffold1703 SAMTools SNP 170274 170274 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1703 SAMTools SNP 170302 170302 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1703 SAMTools SNP 194731 194731 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 194738 194738 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 220343 220343 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1703 SAMTools SNP 223023 223023 67.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1703 SAMTools SNP 226755 226755 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1703 SAMTools SNP 227339 227339 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1703 SAMTools SNP 227384 227384 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1703 SAMTools SNP 227582 227582 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1703 SAMTools SNP 227606 227606 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1703 SAMTools SNP 227745 227745 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C69:36 scaffold1703 SAMTools SNP 227918 227918 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1703 SAMTools SNP 228265 228265 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 232048 232048 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1703 SAMTools SNP 238315 238315 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1703 SAMTools SNP 257631 257631 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C9%2C0:16 scaffold1703 SAMTools SNP 258039 258039 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1.8e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C17:20 scaffold1703 SAMTools SNP 258241 258241 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold1703 SAMTools SNP 364008 364008 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C0%2C27%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.00081%2C5.7e-14%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1703 SAMTools SNP 364040 364040 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C21%2C0:33 scaffold1703 SAMTools SNP 364437 364437 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1703 SAMTools SNP 364505 364505 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C0%2C40%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.24%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1703 SAMTools SNP 364547 364547 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1703 SAMTools SNP 364550 364550 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1703 SAMTools SNP 366526 366526 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1703 SAMTools SNP 366753 366753 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1703 SAMTools SNP 366773 366773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1703 SAMTools SNP 367026 367026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1703 SAMTools SNP 368415 368415 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C42%2C9%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.04%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1703 SAMTools SNP 368433 368433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C39%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1703 SAMTools SNP 368445 368445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D4%2C2%2C17%2C53%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.046%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C31:34 scaffold1703 SAMTools SNP 368759 368759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C18%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D2.1e-06%2C1%2C0.063%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 368819 368819 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.063%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1703 SAMTools SNP 368849 368849 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C3%2C3%3BMQ%3D46%3BFQ%3D16.1%3BPV4%3D1%2C1%2C0.0057%2C8.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1703 SAMTools SNP 368879 368879 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C5%3BMQ%3D44%3BFQ%3D14.2%3BPV4%3D0.072%2C1%2C0.002%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1703 SAMTools SNP 368891 368891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C14%2C5%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C0.41%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 369791 369791 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C59%2C25%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D2.6e-08%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1703 SAMTools SNP 371496 371496 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C31%2C70%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.45%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 371523 371523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C125%2C34%2C144%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 371529 371529 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C153%2C34%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 372221 372221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C86%2C19%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 372254 372254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C32%2C24%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 372652 372652 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C0.26%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 372688 372688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C54%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 373162 373162 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C21%2C7%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1703 SAMTools SNP 373766 373766 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C2%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1703 SAMTools SNP 373790 373790 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C22%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C1%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 373820 373820 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C26%3BMQ%3D50%3BFQ%3D-169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C142%2C0:99 scaffold1703 SAMTools SNP 374605 374605 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D3e-05%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1703 SAMTools SNP 376361 376361 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 376923 376923 62.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold1703 SAMTools SNP 376956 376956 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C114%2C0:99 scaffold1703 SAMTools SNP 377275 377275 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C78%2C0:99 scaffold1703 SAMTools SNP 377518 377518 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C46%2C21%2C64%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1.3e-81%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1703 SAMTools SNP 380828 380828 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1703 SAMTools SNP 382039 382039 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1703 SAMTools SNP 382111 382111 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 382524 382524 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 382525 382525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 383578 383578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1703 SAMTools SNP 387770 387770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1703 SAMTools SNP 387932 387932 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C22%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C2.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C91%2C0:99 scaffold1703 SAMTools SNP 388276 388276 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1703 SAMTools SNP 388676 388676 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 403528 403528 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold1703 SAMTools SNP 416599 416599 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 419862 419862 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1703 SAMTools SNP 419904 419904 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1703 SAMTools SNP 420747 420747 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1703 SAMTools SNP 431294 431294 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 453269 453269 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 454229 454229 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1703 SAMTools SNP 462306 462306 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1703 SAMTools SNP 462327 462327 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold1703 SAMTools SNP 463885 463885 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold1703 SAMTools SNP 464577 464577 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1703 SAMTools SNP 464603 464603 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.3e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1703 SAMTools SNP 465622 465622 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C15%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.6%2C0.12%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold1703 SAMTools SNP 466750 466750 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1703 SAMTools SNP 473303 473303 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 495961 495961 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C13%3BMQ%3D20%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C135%2C0:99 scaffold1703 SAMTools SNP 496000 496000 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C8%2C56%3BMQ%3D22%3BFQ%3D217%3BPV4%3D0.77%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1703 SAMTools SNP 497225 497225 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1703 SAMTools SNP 497236 497236 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1703 SAMTools SNP 497532 497532 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C11%2C13%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.15%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1703 SAMTools SNP 497542 497542 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C21%2C12%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.46%2C1%2C1%2C8.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1703 SAMTools SNP 497584 497584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 498601 498601 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1703 SAMTools SNP 501497 501497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1703 SAMTools SNP 501507 501507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.23%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1703 SAMTools SNP 501830 501830 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1703 SAMTools SNP 501881 501881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C3.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 502400 502400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1703 SAMTools SNP 502421 502421 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1703 SAMTools SNP 502816 502816 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 502834 502834 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.27%2C0.1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1703 SAMTools SNP 502855 502855 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1703 SAMTools SNP 502864 502864 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1703 SAMTools SNP 502888 502888 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1703 SAMTools SNP 502924 502924 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1703 SAMTools SNP 503412 503412 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 503454 503454 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 504228 504228 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C45%2C0:87 scaffold1703 SAMTools SNP 504703 504703 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 504769 504769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1703 SAMTools SNP 504823 504823 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.14%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C195:99 scaffold1703 SAMTools SNP 505198 505198 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1703 SAMTools SNP 505207 505207 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1703 SAMTools SNP 505243 505243 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C4%2C8%2C2%3BMQ%3D33%3BFQ%3D5.47%3BPV4%3D0.63%2C8.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C254:30 scaffold1703 SAMTools SNP 505264 505264 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C9%2C0%3BMQ%3D36%3BFQ%3D112%3BPV4%3D0.57%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1703 SAMTools SNP 505661 505661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C45%3BMQ%3D39%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1703 SAMTools SNP 507935 507935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C11%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.59%2C1%2C0.0023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 508166 508166 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1703 SAMTools SNP 509887 509887 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1703 SAMTools SNP 509899 509899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1703 SAMTools SNP 510489 510489 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 512326 512326 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1703 SAMTools SNP 512329 512329 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1703 SAMTools SNP 513901 513901 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1703 SAMTools SNP 513994 513994 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1703 SAMTools SNP 514033 514033 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1703 SAMTools SNP 523498 523498 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold1703 SAMTools SNP 529037 529037 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C3%2C0%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D0.041%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1703 SAMTools SNP 529724 529724 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C114:52 scaffold1703 SAMTools SNP 529799 529799 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C32:35 scaffold1703 SAMTools SNP 530295 530295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1703 SAMTools SNP 530757 530757 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C11%2C63%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.00079%2C2.2e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1703 SAMTools SNP 530856 530856 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C3%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.41%2C5.3e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1703 SAMTools SNP 531154 531154 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1703 SAMTools SNP 531699 531699 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.012%2C6.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1703 SAMTools SNP 531810 531810 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C21%2C0:39 scaffold1703 SAMTools SNP 531954 531954 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.56%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1703 SAMTools SNP 532181 532181 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 532244 532244 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.29%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1703 SAMTools SNP 532280 532280 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.23%2C0.025%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1703 SAMTools SNP 532565 532565 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.25%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1703 SAMTools SNP 532578 532578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.58%2C0.44%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1703 SAMTools SNP 532596 532596 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1703 SAMTools SNP 533101 533101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1703 SAMTools SNP 533119 533119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1703 SAMTools SNP 533137 533137 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1703 SAMTools SNP 533149 533149 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1703 SAMTools SNP 533164 533164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-07%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 533338 533338 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.4e-07%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 533828 533828 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C0.067%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1703 SAMTools SNP 533872 533872 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.34%2C0.11%2C1%2C7.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1703 SAMTools SNP 533887 533887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C12%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1703 SAMTools SNP 534382 534382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1703 SAMTools SNP 534427 534427 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C10%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.71%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1703 SAMTools SNP 534480 534480 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 534834 534834 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.034%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1703 SAMTools SNP 534900 534900 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 534930 534930 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C219%2C183:67 scaffold1703 SAMTools SNP 535362 535362 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C33%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1703 SAMTools SNP 535368 535368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 535562 535562 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 538672 538672 34.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1703 SAMTools SNP 539622 539622 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1703 SAMTools SNP 540798 540798 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold1703 SAMTools SNP 540813 540813 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C21%2C0:34 scaffold1703 SAMTools SNP 543579 543579 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1703 SAMTools SNP 543582 543582 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1703 SAMTools SNP 551856 551856 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1703 SAMTools SNP 554272 554272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1703 SAMTools SNP 554284 554284 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1703 SAMTools SNP 555133 555133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1703 SAMTools SNP 555226 555226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1703 SAMTools SNP 566257 566257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 567576 567576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 567866 567866 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1703 SAMTools SNP 572950 572950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1703 SAMTools SNP 579089 579089 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1703 SAMTools SNP 579564 579564 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1703 SAMTools SNP 579597 579597 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D6.4e-05%2C9.4e-16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C237:86 scaffold1703 SAMTools SNP 579781 579781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1703 SAMTools SNP 587799 587799 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1703 SAMTools SNP 587826 587826 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 588183 588183 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C188:53 scaffold1703 SAMTools SNP 590548 590548 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1703 SAMTools SNP 594086 594086 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C81%2C0:99 scaffold1703 SAMTools SNP 594131 594131 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C5.8e-22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C237:73 scaffold1703 SAMTools SNP 594272 594272 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D18.9%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C47:49 scaffold1703 SAMTools SNP 596205 596205 60.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold1703 SAMTools SNP 596534 596534 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1703 SAMTools SNP 599329 599329 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 599569 599569 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 599614 599614 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 608621 608621 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1703 SAMTools SNP 608709 608709 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C30%2C8%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C2.2e-55%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1703 SAMTools SNP 608865 608865 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C85%2C12%2C25%3BMQ%3D50%3BFQ%3D38%3BPV4%3D2.4e-05%2C1.2e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1703 SAMTools SNP 609104 609104 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C45%2C0:87 scaffold1703 SAMTools SNP 614968 614968 28.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold1703 SAMTools SNP 615061 615061 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1703 SAMTools SNP 615121 615121 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1703 SAMTools SNP 615130 615130 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C34%2C12%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.32%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1703 SAMTools SNP 615692 615692 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C5%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.25%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1703 SAMTools SNP 616271 616271 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.063%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 616277 616277 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.03%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 616723 616723 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1703 SAMTools SNP 617510 617510 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1703 SAMTools SNP 617606 617606 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.38%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold1703 SAMTools SNP 617784 617784 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold1703 SAMTools SNP 627475 627475 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1.8e-06%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C20:23 scaffold1703 SAMTools SNP 638854 638854 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1703 SAMTools SNP 639298 639298 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1703 SAMTools SNP 641976 641976 37.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1703 SAMTools SNP 642036 642036 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C241:99 scaffold1703 SAMTools SNP 642059 642059 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1703 SAMTools SNP 642568 642568 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C216:28 scaffold1703 SAMTools SNP 642721 642721 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C1%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C244%2C0:99 scaffold1703 SAMTools SNP 642832 642832 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1703 SAMTools SNP 643258 643258 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C0.022%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C28:31 scaffold1703 SAMTools SNP 643549 643549 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1703 SAMTools SNP 643558 643558 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 643579 643579 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1703 SAMTools SNP 644085 644085 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 644133 644133 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C32%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.24%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1703 SAMTools SNP 644193 644193 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C0%2C21%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1703 SAMTools SNP 644196 644196 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C36%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 644667 644667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C42%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 644712 644712 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1703 SAMTools SNP 644751 644751 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C36%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 644835 644835 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C2%2C7%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1703 SAMTools SNP 648754 648754 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 648755 648755 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 651450 651450 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C65%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C0.44%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 651471 651471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C42%2C45%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 651483 651483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C24%2C25%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-07%2C5.3e-08%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 652083 652083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C168%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 652086 652086 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C128%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-05%2C8.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 652104 652104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C3%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 652182 652182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1703 SAMTools SNP 653114 653114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C13%2C125%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 653722 653722 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C225%2C69%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 654085 654085 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C388%2C15%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C4.6e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 654100 654100 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C321%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 654169 654169 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C44%2C68%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 654175 654175 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C33%2C92%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 654861 654861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D741%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C691%2C49%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 657672 657672 23.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1703 SAMTools SNP 661903 661903 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D793%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D255%2C137%2C278%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 661912 661912 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C128%2C108%2C138%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1.1e-14%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 661930 661930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D565%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C236%2C24%2C177%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C6.4e-20%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 661969 661969 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D712%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C330%2C15%2C248%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.22%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1703 SAMTools SNP 661999 661999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D577%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C463%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 662426 662426 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1703 SAMTools SNP 662833 662833 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1703 SAMTools SNP 662842 662842 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1703 SAMTools SNP 663542 663542 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C146%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1703 SAMTools SNP 667683 667683 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1703 SAMTools SNP 683233 683233 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1703 SAMTools SNP 789496 789496 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 789505 789505 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1703 SAMTools SNP 816051 816051 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1704 SAMTools SNP 24895 24895 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1704 SAMTools SNP 33161 33161 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1704 SAMTools SNP 33436 33436 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C208:54 scaffold1704 SAMTools SNP 33457 33457 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1704 SAMTools SNP 35510 35510 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 36034 36034 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold1704 SAMTools SNP 38258 38258 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1704 SAMTools SNP 38518 38518 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1704 SAMTools SNP 42259 42259 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D0.14%2C0.00014%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C34:37 scaffold1704 SAMTools SNP 43134 43134 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D285%2C0%2C92%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C3.9e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1704 SAMTools SNP 45028 45028 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1704 SAMTools SNP 45048 45048 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1704 SAMTools SNP 45600 45600 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1704 SAMTools SNP 46247 46247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1109%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C976%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1704 SAMTools SNP 52261 52261 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1704 SAMTools SNP 52291 52291 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1704 SAMTools SNP 52795 52795 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.06%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1704 SAMTools SNP 53165 53165 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1704 SAMTools SNP 53505 53505 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C196:30 scaffold1704 SAMTools SNP 54035 54035 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C25%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.41%2C2.1e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1704 SAMTools SNP 54738 54738 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.65%2C8.2e-33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1704 SAMTools SNP 55103 55103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1704 SAMTools SNP 62784 62784 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C12:15 scaffold1704 SAMTools SNP 62846 62846 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1704 SAMTools SNP 63340 63340 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1704 SAMTools SNP 63358 63358 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1704 SAMTools SNP 64710 64710 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold1704 SAMTools SNP 64716 64716 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C140:99 scaffold1704 SAMTools SNP 65146 65146 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.025%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1704 SAMTools SNP 65815 65815 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold1704 SAMTools SNP 65820 65820 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.076%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C163:62 scaffold1704 SAMTools SNP 65824 65824 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C99:61 scaffold1704 SAMTools SNP 67726 67726 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1704 SAMTools SNP 67742 67742 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1704 SAMTools SNP 70768 70768 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1704 SAMTools SNP 70799 70799 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1704 SAMTools SNP 70932 70932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1704 SAMTools SNP 71243 71243 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C238:99 scaffold1704 SAMTools SNP 73058 73058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1704 SAMTools SNP 73065 73065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1704 SAMTools SNP 73787 73787 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C16%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C160%2C0:99 scaffold1704 SAMTools SNP 73822 73822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1704 SAMTools SNP 74508 74508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1704 SAMTools SNP 74577 74577 119 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C26%2C8%2C142%2C0%2C139:33 scaffold1704 SAMTools SNP 74646 74646 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1704 SAMTools SNP 75078 75078 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.28%2C0.32%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1704 SAMTools SNP 75094 75094 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1704 SAMTools SNP 75296 75296 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1704 SAMTools SNP 78170 78170 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1704 SAMTools SNP 78973 78973 51.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold1704 SAMTools SNP 80362 80362 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1704 SAMTools SNP 80449 80449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C68%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1704 SAMTools SNP 82621 82621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 83424 83424 28.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1704 SAMTools SNP 83892 83892 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C45%2C0:86 scaffold1704 SAMTools SNP 86852 86852 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C222:72 scaffold1704 SAMTools SNP 86896 86896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1704 SAMTools SNP 88562 88562 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C2%2C12%3BMQ%3D49%3BFQ%3D86%3BPV4%3D0.0001%2C1e-09%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1704 SAMTools SNP 89572 89572 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C70%2C0%2C17%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.58%2C5e-08%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1704 SAMTools SNP 90346 90346 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold1704 SAMTools SNP 90889 90889 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1704 SAMTools SNP 91058 91058 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold1704 SAMTools SNP 92601 92601 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C202:99 scaffold1704 SAMTools SNP 93442 93442 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C24%2C0:45 scaffold1704 SAMTools SNP 93721 93721 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1704 SAMTools SNP 94767 94767 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C10%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1.5e-09%2C1%2C1%2C6.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1704 SAMTools SNP 100004 100004 23.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1704 SAMTools SNP 100660 100660 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C15%2C0%3BMQ%3D28%3BFQ%3D57%3BPV4%3D1%2C0.062%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C184:87 scaffold1704 SAMTools SNP 100689 100689 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C16%2C1%3BMQ%3D28%3BFQ%3D59%3BPV4%3D0.31%2C0.02%2C0.19%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C191:89 scaffold1704 SAMTools SNP 102493 102493 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 104329 104329 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.038%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1704 SAMTools SNP 104353 104353 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C5%3BMQ%3D44%3BFQ%3D104%3BPV4%3D0.61%2C0.44%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1704 SAMTools SNP 104660 104660 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C7%3BMQ%3D37%3BFQ%3D129%3BPV4%3D0.66%2C0.37%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C172:99 scaffold1704 SAMTools SNP 105176 105176 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C13%3BMQ%3D49%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1704 SAMTools SNP 105192 105192 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D3%2C3%2C57%2C14%3BMQ%3D49%3BFQ%3D7.8%3BPV4%3D0.12%2C1%2C0.28%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold1704 SAMTools SNP 105227 105227 51 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C24%2C3%2C3%3BMQ%3D49%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1704 SAMTools SNP 105251 105251 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C15%2C49%3BMQ%3D49%3BFQ%3D-95%3BPV4%3D0.017%2C0.18%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold1704 SAMTools SNP 114223 114223 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C5.9e-10%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C156:91 scaffold1704 SAMTools SNP 115867 115867 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 142960 142960 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1704 SAMTools SNP 143327 143327 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C168:99 scaffold1704 SAMTools SNP 143381 143381 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C232:97 scaffold1704 SAMTools SNP 143408 143408 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C191:59 scaffold1704 SAMTools SNP 143454 143454 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.22%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C229:99 scaffold1704 SAMTools SNP 144946 144946 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.25%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold1704 SAMTools SNP 144947 144947 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1704 SAMTools SNP 146680 146680 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1704 SAMTools SNP 146695 146695 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.15%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C112:78 scaffold1704 SAMTools SNP 146721 146721 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.039%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1704 SAMTools SNP 146951 146951 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1704 SAMTools SNP 152315 152315 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1704 SAMTools SNP 153165 153165 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C54%2C0:98 scaffold1704 SAMTools SNP 153197 153197 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.48%2C8.6e-22%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1704 SAMTools SNP 160646 160646 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 162178 162178 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1704 SAMTools SNP 189041 189041 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 189060 189060 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 206999 206999 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C46%2C5%2C9%3BMQ%3D48%3BFQ%3D130%3BPV4%3D1%2C1%2C0.0024%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1704 SAMTools SNP 207231 207231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C34%2C25%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1704 SAMTools SNP 207241 207241 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C6%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.47%2C1%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1704 SAMTools SNP 207654 207654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 207717 207717 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C21%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 209726 209726 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C47%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 209923 209923 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C48%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.0048%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 210387 210387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C22%2C4%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.081%2C0.029%2C0.08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 211131 211131 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C9%3BMQ%3D45%3BFQ%3D159%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1704 SAMTools SNP 211152 211152 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C18%2C17%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.0044%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 211163 211163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C33%2C26%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.84%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 211457 211457 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C36%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1704 SAMTools SNP 211951 211951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C50%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1704 SAMTools SNP 212881 212881 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C36%2C0:69 scaffold1704 SAMTools SNP 212923 212923 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1704 SAMTools SNP 212962 212962 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C6%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.36%2C8.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1704 SAMTools SNP 213464 213464 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1704 SAMTools SNP 213542 213542 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 214759 214759 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1704 SAMTools SNP 215530 215530 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1704 SAMTools SNP 215953 215953 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C2%2C24%2C2%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.016%2C0.33%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold1704 SAMTools SNP 215968 215968 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1704 SAMTools SNP 216717 216717 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C15%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.64%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1704 SAMTools SNP 216930 216930 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1704 SAMTools SNP 216951 216951 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.015%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1704 SAMTools SNP 217126 217126 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C15%2C0:27 scaffold1704 SAMTools SNP 217191 217191 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1704 SAMTools SNP 217229 217229 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1704 SAMTools SNP 217252 217252 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C152:99 scaffold1704 SAMTools SNP 217669 217669 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1704 SAMTools SNP 217675 217675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1704 SAMTools SNP 218903 218903 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1704 SAMTools SNP 218923 218923 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1704 SAMTools SNP 221915 221915 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1704 SAMTools SNP 230541 230541 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1704 SAMTools SNP 234678 234678 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1704 SAMTools SNP 239787 239787 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1704 SAMTools SNP 244504 244504 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1704 SAMTools SNP 247956 247956 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C189:99 scaffold1704 SAMTools SNP 248013 248013 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1704 SAMTools SNP 249532 249532 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1704 SAMTools SNP 249610 249610 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold1704 SAMTools SNP 249640 249640 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C226:99 scaffold1704 SAMTools SNP 249663 249663 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C0.0064%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1704 SAMTools SNP 250207 250207 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1704 SAMTools SNP 251047 251047 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 19029 19029 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 19081 19081 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold1705 SAMTools SNP 19815 19815 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1705 SAMTools SNP 19840 19840 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1705 SAMTools SNP 19899 19899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1705 SAMTools SNP 20044 20044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1705 SAMTools SNP 20688 20688 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 20716 20716 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 20742 20742 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1705 SAMTools SNP 20782 20782 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.31%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C248:99 scaffold1705 SAMTools SNP 21347 21347 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C1%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1705 SAMTools SNP 23000 23000 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1705 SAMTools SNP 23835 23835 27.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold1705 SAMTools SNP 23913 23913 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.36%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1705 SAMTools SNP 23923 23923 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1705 SAMTools SNP 24042 24042 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1705 SAMTools SNP 24141 24141 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1705 SAMTools SNP 28039 28039 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold1705 SAMTools SNP 28096 28096 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1705 SAMTools SNP 28104 28104 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1705 SAMTools SNP 42071 42071 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 42112 42112 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 44319 44319 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.29%2C9.9e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C79:60 scaffold1705 SAMTools SNP 44358 44358 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0222%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1705 SAMTools SNP 44406 44406 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1705 SAMTools SNP 45277 45277 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1705 SAMTools SNP 45497 45497 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 59660 59660 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 59723 59723 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1705 SAMTools SNP 59875 59875 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1705 SAMTools SNP 59950 59950 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1705 SAMTools SNP 62451 62451 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1705 SAMTools SNP 75067 75067 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1705 SAMTools SNP 77829 77829 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1705 SAMTools SNP 78453 78453 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C143:28 scaffold1705 SAMTools SNP 78507 78507 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C0.15%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold1705 SAMTools SNP 78543 78543 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1705 SAMTools SNP 78807 78807 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1705 SAMTools SNP 78830 78830 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1705 SAMTools SNP 78849 78849 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1705 SAMTools SNP 79404 79404 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C203:99 scaffold1705 SAMTools SNP 79857 79857 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1705 SAMTools SNP 80107 80107 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1705 SAMTools SNP 84982 84982 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1705 SAMTools SNP 87136 87136 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1705 SAMTools SNP 87815 87815 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 87983 87983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1705 SAMTools SNP 88155 88155 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1705 SAMTools SNP 88209 88209 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1705 SAMTools SNP 88893 88893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1705 SAMTools SNP 89595 89595 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1705 SAMTools SNP 89654 89654 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1705 SAMTools SNP 92279 92279 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1705 SAMTools SNP 92580 92580 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1705 SAMTools SNP 92735 92735 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.021%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C38:41 scaffold1705 SAMTools SNP 111266 111266 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1705 SAMTools SNP 175261 175261 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1705 SAMTools SNP 175296 175296 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1705 SAMTools SNP 175297 175297 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1706 SAMTools SNP 6342 6342 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1706 SAMTools SNP 25566 25566 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1706 SAMTools SNP 34615 34615 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1706 SAMTools SNP 37314 37314 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 19117 19117 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 19188 19188 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1707 SAMTools SNP 107772 107772 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1707 SAMTools SNP 107952 107952 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1707 SAMTools SNP 107978 107978 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1707 SAMTools SNP 107986 107986 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1707 SAMTools SNP 108006 108006 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 108185 108185 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1707 SAMTools SNP 108212 108212 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1707 SAMTools SNP 117392 117392 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 117585 117585 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 117989 117989 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 118024 118024 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 126032 126032 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1707 SAMTools SNP 126181 126181 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1707 SAMTools SNP 126193 126193 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1707 SAMTools SNP 126199 126199 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1707 SAMTools SNP 126256 126256 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1707 SAMTools SNP 126277 126277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1707 SAMTools SNP 126409 126409 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.35%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1707 SAMTools SNP 126485 126485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1707 SAMTools SNP 126784 126784 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1707 SAMTools SNP 132769 132769 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1707 SAMTools SNP 132869 132869 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1707 SAMTools SNP 134505 134505 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 134893 134893 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1707 SAMTools SNP 134905 134905 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1707 SAMTools SNP 135318 135318 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1707 SAMTools SNP 171905 171905 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1707 SAMTools SNP 171926 171926 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D-272%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C245%2C0:99 scaffold1707 SAMTools SNP 178914 178914 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1707 SAMTools SNP 243309 243309 182 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C40%2C228%2C0%2C222:63 scaffold1707 SAMTools SNP 243330 243330 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold1707 SAMTools SNP 245808 245808 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1708 SAMTools SNP 14627 14627 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1708 SAMTools SNP 15150 15150 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1708 SAMTools SNP 15778 15778 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1708 SAMTools SNP 15817 15817 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C21%2C0:39 scaffold1708 SAMTools SNP 16518 16518 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1708 SAMTools SNP 16533 16533 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold1708 SAMTools SNP 16552 16552 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1708 SAMTools SNP 17063 17063 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1708 SAMTools SNP 17071 17071 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1708 SAMTools SNP 28257 28257 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1708 SAMTools SNP 28567 28567 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1708 SAMTools SNP 36648 36648 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1708 SAMTools SNP 39476 39476 11.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1708 SAMTools SNP 39480 39480 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1708 SAMTools SNP 39547 39547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C311%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 40192 40192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C385%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 40250 40250 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1708 SAMTools SNP 40410 40410 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C54%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1708 SAMTools SNP 40797 40797 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C35%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1708 SAMTools SNP 40803 40803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.37%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1708 SAMTools SNP 43108 43108 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 43135 43135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 43461 43461 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 43522 43522 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C86%2C37%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1708 SAMTools SNP 43537 43537 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 44302 44302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C141%2C1%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C7e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1708 SAMTools SNP 44308 44308 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C229%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1708 SAMTools SNP 44341 44341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1708 SAMTools SNP 45188 45188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1708 SAMTools SNP 60526 60526 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1708 SAMTools SNP 66789 66789 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1708 SAMTools SNP 88867 88867 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1709 SAMTools SNP 15662 15662 6.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D19%3BFQ%3D-26%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C1:5 scaffold1709 SAMTools SNP 15697 15697 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1709 SAMTools SNP 19268 19268 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D46%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1709 SAMTools SNP 19332 19332 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1709 SAMTools SNP 49014 49014 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C127:61 scaffold1709 SAMTools SNP 49556 49556 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1709 SAMTools SNP 49598 49598 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold1709 SAMTools SNP 50834 50834 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1709 SAMTools SNP 51829 51829 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1709 SAMTools SNP 51904 51904 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1709 SAMTools SNP 51919 51919 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1709 SAMTools SNP 52140 52140 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1709 SAMTools SNP 52344 52344 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1709 SAMTools SNP 52365 52365 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1709 SAMTools SNP 52376 52376 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold1709 SAMTools SNP 52395 52395 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold1709 SAMTools SNP 52533 52533 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C218:69 scaffold1709 SAMTools SNP 53215 53215 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1709 SAMTools SNP 53233 53233 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1709 SAMTools SNP 53798 53798 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.43%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1709 SAMTools SNP 53843 53843 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1709 SAMTools SNP 53873 53873 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1709 SAMTools SNP 54675 54675 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1709 SAMTools SNP 55772 55772 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1709 SAMTools SNP 55942 55942 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1709 SAMTools SNP 58461 58461 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1709 SAMTools SNP 58480 58480 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1709 SAMTools SNP 58666 58666 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold1709 SAMTools SNP 59100 59100 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1709 SAMTools SNP 60601 60601 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1709 SAMTools SNP 60914 60914 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.087%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C195:99 scaffold1709 SAMTools SNP 61545 61545 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.18%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold1709 SAMTools SNP 61877 61877 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1709 SAMTools SNP 67099 67099 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1709 SAMTools SNP 67108 67108 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1709 SAMTools SNP 67138 67138 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1709 SAMTools SNP 68117 68117 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1709 SAMTools SNP 68435 68435 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C176:39 scaffold1709 SAMTools SNP 72091 72091 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1709 SAMTools SNP 72461 72461 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 74693 74693 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1709 SAMTools SNP 74756 74756 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1709 SAMTools SNP 74798 74798 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1709 SAMTools SNP 75046 75046 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1709 SAMTools SNP 75050 75050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1709 SAMTools SNP 75077 75077 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1709 SAMTools SNP 75803 75803 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1709 SAMTools SNP 77037 77037 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 77067 77067 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1709 SAMTools SNP 77085 77085 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1709 SAMTools SNP 77090 77090 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1709 SAMTools SNP 77103 77103 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1709 SAMTools SNP 79847 79847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 80057 80057 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 80132 80132 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 80165 80165 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 82722 82722 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1709 SAMTools SNP 82954 82954 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 83516 83516 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1709 SAMTools SNP 83609 83609 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1709 SAMTools SNP 84400 84400 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 84799 84799 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 84825 84825 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1709 SAMTools SNP 85695 85695 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1709 SAMTools SNP 86093 86093 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1709 SAMTools SNP 86123 86123 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1709 SAMTools SNP 86147 86147 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.38%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1709 SAMTools SNP 86202 86202 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1709 SAMTools SNP 104106 104106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C11%2C28%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D0.5%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold1709 SAMTools SNP 104115 104115 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C98:99 scaffold1709 SAMTools SNP 104142 104142 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0083%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1709 SAMTools SNP 105400 105400 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1709 SAMTools SNP 106345 106345 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1709 SAMTools SNP 106348 106348 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1709 SAMTools SNP 108280 108280 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C36%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1709 SAMTools SNP 109975 109975 95.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold1710 SAMTools SNP 67022 67022 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1710 SAMTools SNP 67052 67052 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1710 SAMTools SNP 116743 116743 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold1710 SAMTools SNP 118967 118967 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 121437 121437 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1710 SAMTools SNP 141339 141339 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 142002 142002 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1710 SAMTools SNP 143635 143635 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.28%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C158:99 scaffold1710 SAMTools SNP 143654 143654 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.079%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C195:99 scaffold1710 SAMTools SNP 144001 144001 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1710 SAMTools SNP 144412 144412 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1710 SAMTools SNP 144823 144823 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 144826 144826 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 145674 145674 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 149962 149962 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1710 SAMTools SNP 151412 151412 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 153340 153340 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 155498 155498 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 155698 155698 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1710 SAMTools SNP 158817 158817 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1710 SAMTools SNP 159567 159567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1710 SAMTools SNP 159661 159661 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C42%2C0:81 scaffold1710 SAMTools SNP 159778 159778 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 159779 159779 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 160291 160291 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1710 SAMTools SNP 160537 160537 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 160569 160569 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 162635 162635 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.07%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C245:66 scaffold1710 SAMTools SNP 162759 162759 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.4%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C135:51 scaffold1710 SAMTools SNP 162893 162893 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.63%2C5.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C238:99 scaffold1710 SAMTools SNP 163042 163042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1710 SAMTools SNP 164093 164093 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1710 SAMTools SNP 187440 187440 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C193:99 scaffold1710 SAMTools SNP 189979 189979 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1710 SAMTools SNP 190076 190076 47.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1710 SAMTools SNP 190283 190283 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C159%2C11%2C99%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0021%2C2.3e-245%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1710 SAMTools SNP 190626 190626 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.5e-09%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1710 SAMTools SNP 190847 190847 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1710 SAMTools SNP 191904 191904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C47%2C22%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 192673 192673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C8%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 194074 194074 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C4%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.4%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 194287 194287 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C46%2C19%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 194291 194291 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C40%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.022%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 194583 194583 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C2%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.1%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1710 SAMTools SNP 194688 194688 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.047%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1710 SAMTools SNP 195898 195898 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1710 SAMTools SNP 196347 196347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1710 SAMTools SNP 196493 196493 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1710 SAMTools SNP 199351 199351 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 199352 199352 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 208471 208471 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 208475 208475 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 213391 213391 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1710 SAMTools SNP 213406 213406 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 213655 213655 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.062%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1710 SAMTools SNP 213682 213682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1710 SAMTools SNP 214238 214238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1710 SAMTools SNP 218307 218307 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C4.7e-06%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C237:99 scaffold1710 SAMTools SNP 219438 219438 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C195:53 scaffold1710 SAMTools SNP 226442 226442 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C56:43 scaffold1710 SAMTools SNP 227597 227597 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.39%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C107:99 scaffold1710 SAMTools SNP 227618 227618 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold1710 SAMTools SNP 227744 227744 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1710 SAMTools SNP 228328 228328 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1710 SAMTools SNP 228344 228344 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 232196 232196 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C71:31 scaffold1710 SAMTools SNP 232291 232291 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 232318 232318 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1710 SAMTools SNP 232858 232858 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold1710 SAMTools SNP 233265 233265 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0035%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C109:36 scaffold1710 SAMTools SNP 233489 233489 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1710 SAMTools SNP 235040 235040 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 235500 235500 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1710 SAMTools SNP 235802 235802 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1710 SAMTools SNP 235823 235823 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1710 SAMTools SNP 236003 236003 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1710 SAMTools SNP 236642 236642 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1710 SAMTools SNP 237420 237420 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1710 SAMTools SNP 237460 237460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1710 SAMTools SNP 237556 237556 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1710 SAMTools SNP 238240 238240 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1710 SAMTools SNP 238575 238575 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 238600 238600 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 239230 239230 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 239244 239244 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1710 SAMTools SNP 239683 239683 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.097%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C124:46 scaffold1710 SAMTools SNP 242724 242724 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 242739 242739 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 242778 242778 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1710 SAMTools SNP 242806 242806 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 243111 243111 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 243177 243177 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 243183 243183 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 244284 244284 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1710 SAMTools SNP 244308 244308 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1710 SAMTools SNP 245391 245391 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1710 SAMTools SNP 245401 245401 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.087%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1710 SAMTools SNP 246944 246944 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 249719 249719 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1710 SAMTools SNP 257564 257564 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.7e-18%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C197:33 scaffold1710 SAMTools SNP 257703 257703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1710 SAMTools SNP 260170 260170 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1710 SAMTools SNP 260705 260705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1710 SAMTools SNP 260717 260717 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1710 SAMTools SNP 260768 260768 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1710 SAMTools SNP 260819 260819 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1710 SAMTools SNP 261114 261114 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 261183 261183 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 261874 261874 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1710 SAMTools SNP 261904 261904 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C221:99 scaffold1710 SAMTools SNP 262502 262502 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C0.24%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1710 SAMTools SNP 262503 262503 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C0.3%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1710 SAMTools SNP 263261 263261 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1710 SAMTools SNP 263381 263381 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 263956 263956 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1710 SAMTools SNP 264530 264530 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 264557 264557 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 264593 264593 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1710 SAMTools SNP 264822 264822 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C203:99 scaffold1710 SAMTools SNP 264849 264849 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1710 SAMTools SNP 265152 265152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 265197 265197 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 265221 265221 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1710 SAMTools SNP 265832 265832 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1710 SAMTools SNP 265862 265862 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1710 SAMTools SNP 266948 266948 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.13%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1710 SAMTools SNP 267415 267415 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1710 SAMTools SNP 267490 267490 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C227:99 scaffold1710 SAMTools SNP 267492 267492 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C214:99 scaffold1710 SAMTools SNP 267987 267987 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1710 SAMTools SNP 268616 268616 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C7%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D5.2e-06%2C1%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1710 SAMTools SNP 325151 325151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 330087 330087 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1710 SAMTools SNP 334716 334716 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1710 SAMTools SNP 339415 339415 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C142:99 scaffold1710 SAMTools SNP 339442 339442 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1710 SAMTools SNP 339469 339469 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.089%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold1710 SAMTools SNP 346064 346064 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 350260 350260 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 352094 352094 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C182:99 scaffold1710 SAMTools SNP 352266 352266 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C6%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C172%2C0:99 scaffold1710 SAMTools SNP 352371 352371 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C26%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.7e-105%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1710 SAMTools SNP 352531 352531 54.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold1710 SAMTools SNP 352651 352651 56.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold1710 SAMTools SNP 354950 354950 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1710 SAMTools SNP 354969 354969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1710 SAMTools SNP 355605 355605 82.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C15%2C0:27 scaffold1710 SAMTools SNP 355617 355617 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 356325 356325 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 356792 356792 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C198:99 scaffold1710 SAMTools SNP 357177 357177 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1710 SAMTools SNP 357237 357237 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold1710 SAMTools SNP 357270 357270 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C60%2C0:99 scaffold1710 SAMTools SNP 357282 357282 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.36%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1710 SAMTools SNP 357394 357394 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.34%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold1710 SAMTools SNP 358099 358099 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1710 SAMTools SNP 358345 358345 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1710 SAMTools SNP 358378 358378 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold1710 SAMTools SNP 360460 360460 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1710 SAMTools SNP 360577 360577 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C4.1e-36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C252:62 scaffold1710 SAMTools SNP 360732 360732 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C60%2C0:99 scaffold1710 SAMTools SNP 360762 360762 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C75%2C0:99 scaffold1710 SAMTools SNP 360817 360817 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C75%2C0:99 scaffold1710 SAMTools SNP 361329 361329 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C7%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.11%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1710 SAMTools SNP 361453 361453 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C36%2C0:69 scaffold1710 SAMTools SNP 361475 361475 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C184:99 scaffold1710 SAMTools SNP 361480 361480 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold1710 SAMTools SNP 361483 361483 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold1710 SAMTools SNP 366306 366306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C37%2C62%2C34%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.56%2C3.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 366799 366799 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C26%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1.1e-09%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1710 SAMTools SNP 367338 367338 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C4%3BMQ%3D47%3BFQ%3D58%3BPV4%3D0.0084%2C1%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1710 SAMTools SNP 367366 367366 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C0.16%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C169:74 scaffold1710 SAMTools SNP 367405 367405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1710 SAMTools SNP 368432 368432 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.074%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C158:99 scaffold1710 SAMTools SNP 368558 368558 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C127%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1710 SAMTools SNP 369631 369631 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1710 SAMTools SNP 369637 369637 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C251:99 scaffold1710 SAMTools SNP 369703 369703 44.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1710 SAMTools SNP 371576 371576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D250%2C12%2C216%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.6e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 371760 371760 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C75%2C0:99 scaffold1710 SAMTools SNP 371898 371898 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C16%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.19%2C7.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1710 SAMTools SNP 372150 372150 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C166%2C0:99 scaffold1710 SAMTools SNP 375473 375473 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.042%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1710 SAMTools SNP 375938 375938 49.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1710 SAMTools SNP 375953 375953 37.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1710 SAMTools SNP 376781 376781 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold1710 SAMTools SNP 379354 379354 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1710 SAMTools SNP 390287 390287 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C8.9e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C166:99 scaffold1710 SAMTools SNP 390770 390770 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.37%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1710 SAMTools SNP 391115 391115 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1710 SAMTools SNP 391127 391127 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1710 SAMTools SNP 391474 391474 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.00026%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1710 SAMTools SNP 391492 391492 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 391552 391552 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 391775 391775 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1710 SAMTools SNP 391865 391865 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C11%2C1%3BMQ%3D49%3BFQ%3D190%3BPV4%3D1%2C0.2%2C0.09%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1710 SAMTools SNP 391897 391897 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C8%2C2%3BMQ%3D49%3BFQ%3D167%3BPV4%3D1%2C0.37%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1710 SAMTools SNP 392594 392594 11.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1710 SAMTools SNP 393269 393269 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1710 SAMTools SNP 393302 393302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1710 SAMTools SNP 393317 393317 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1710 SAMTools SNP 397574 397574 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1710 SAMTools SNP 400818 400818 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.087%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 400840 400840 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1710 SAMTools SNP 400884 400884 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 403951 403951 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1710 SAMTools SNP 408000 408000 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C68%2C0%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 408049 408049 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.18%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1710 SAMTools SNP 409234 409234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1710 SAMTools SNP 413216 413216 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 413587 413587 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 413632 413632 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 418079 418079 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 418085 418085 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 419250 419250 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1710 SAMTools SNP 423412 423412 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1710 SAMTools SNP 429783 429783 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1710 SAMTools SNP 429879 429879 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1710 SAMTools SNP 430034 430034 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1710 SAMTools SNP 430319 430319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 440039 440039 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C102:57 scaffold1710 SAMTools SNP 440122 440122 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.18%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1710 SAMTools SNP 441741 441741 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold1710 SAMTools SNP 441795 441795 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C248:42 scaffold1710 SAMTools SNP 444869 444869 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 444908 444908 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C242:99 scaffold1710 SAMTools SNP 445851 445851 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C2%2C9%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1710 SAMTools SNP 447106 447106 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1710 SAMTools SNP 447111 447111 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.36%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1710 SAMTools SNP 449861 449861 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C9%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.3%2C3.2e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1710 SAMTools SNP 450392 450392 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 450457 450457 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1710 SAMTools SNP 450697 450697 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.19%2C7.5e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1710 SAMTools SNP 450798 450798 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C27%2C16%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 465618 465618 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1710 SAMTools SNP 465874 465874 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C24%2C0:45 scaffold1710 SAMTools SNP 465928 465928 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1710 SAMTools SNP 466256 466256 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C39%2C0:75 scaffold1710 SAMTools SNP 466852 466852 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1710 SAMTools SNP 467209 467209 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1710 SAMTools SNP 475937 475937 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 475961 475961 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 475974 475974 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 488710 488710 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1710 SAMTools SNP 489299 489299 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1710 SAMTools SNP 490105 490105 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D22.9%3BPV4%3D1%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C66:53 scaffold1710 SAMTools SNP 490165 490165 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold1710 SAMTools SNP 490373 490373 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1710 SAMTools SNP 517267 517267 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 559772 559772 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1710 SAMTools SNP 577742 577742 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1710 SAMTools SNP 596771 596771 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1710 SAMTools SNP 606028 606028 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1710 SAMTools SNP 628974 628974 81.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold1710 SAMTools SNP 632066 632066 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1710 SAMTools SNP 632102 632102 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1710 SAMTools SNP 632892 632892 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 632934 632934 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1710 SAMTools SNP 634164 634164 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 634170 634170 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 635556 635556 36.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1710 SAMTools SNP 635626 635626 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1710 SAMTools SNP 635633 635633 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1710 SAMTools SNP 639014 639014 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1710 SAMTools SNP 639075 639075 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1710 SAMTools SNP 645417 645417 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.31%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1710 SAMTools SNP 645660 645660 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1710 SAMTools SNP 646136 646136 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1710 SAMTools SNP 650217 650217 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 650893 650893 166 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D35%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C42%2C0:81 scaffold1710 SAMTools SNP 651476 651476 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 652487 652487 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 652572 652572 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1710 SAMTools SNP 654035 654035 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 656597 656597 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1710 SAMTools SNP 656602 656602 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1710 SAMTools SNP 656793 656793 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1710 SAMTools SNP 656819 656819 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C30%2C0:57 scaffold1710 SAMTools SNP 656910 656910 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1710 SAMTools SNP 657380 657380 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 657383 657383 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 657398 657398 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1710 SAMTools SNP 657407 657407 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1710 SAMTools SNP 657422 657422 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1710 SAMTools SNP 657738 657738 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold1710 SAMTools SNP 658165 658165 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold1710 SAMTools SNP 658846 658846 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold1710 SAMTools SNP 658875 658875 92.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1710 SAMTools SNP 662395 662395 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1710 SAMTools SNP 662482 662482 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1710 SAMTools SNP 662512 662512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1710 SAMTools SNP 663486 663486 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 664936 664936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1710 SAMTools SNP 665646 665646 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1710 SAMTools SNP 665673 665673 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1710 SAMTools SNP 665724 665724 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1710 SAMTools SNP 665935 665935 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1710 SAMTools SNP 665936 665936 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 666214 666214 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1710 SAMTools SNP 670388 670388 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1710 SAMTools SNP 670540 670540 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1710 SAMTools SNP 671743 671743 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C6%2C0%3BMQ%3D46%3BFQ%3D68%3BPV4%3D1%2C1%2C0.08%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1710 SAMTools SNP 672007 672007 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C7%2C0%3BMQ%3D43%3BFQ%3D87%3BPV4%3D0.55%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1710 SAMTools SNP 673978 673978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C26%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1710 SAMTools SNP 674020 674020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C34%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1710 SAMTools SNP 678264 678264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1710 SAMTools SNP 678791 678791 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 681059 681059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1710 SAMTools SNP 681287 681287 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C21%2C0:39 scaffold1710 SAMTools SNP 681435 681435 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1710 SAMTools SNP 682730 682730 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1710 SAMTools SNP 682780 682780 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold1710 SAMTools SNP 682898 682898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1710 SAMTools SNP 683759 683759 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1710 SAMTools SNP 683830 683830 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1710 SAMTools SNP 686366 686366 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1710 SAMTools SNP 688320 688320 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1710 SAMTools SNP 688343 688343 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1710 SAMTools SNP 688934 688934 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold1710 SAMTools SNP 688946 688946 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1710 SAMTools SNP 689027 689027 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1710 SAMTools SNP 689158 689158 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1710 SAMTools SNP 689172 689172 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1710 SAMTools SNP 689258 689258 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 689259 689259 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1710 SAMTools SNP 689401 689401 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1710 SAMTools SNP 690348 690348 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1710 SAMTools SNP 690556 690556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C11%2C5%3BMQ%3D46%3BFQ%3D-54%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1710 SAMTools SNP 690586 690586 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D32%3BFQ%3D-28%3BPV4%3D0.4%2C0.48%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C1%2C0:4 scaffold1710 SAMTools SNP 691111 691111 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C10%2C0:17 scaffold1710 SAMTools SNP 692006 692006 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1710 SAMTools SNP 693242 693242 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C32:35 scaffold1710 SAMTools SNP 693260 693260 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1710 SAMTools SNP 693319 693319 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1710 SAMTools SNP 693368 693368 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.13%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1710 SAMTools SNP 693416 693416 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1710 SAMTools SNP 693675 693675 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C34%2C15%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.00076%2C0.32%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1710 SAMTools SNP 693704 693704 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 693783 693783 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C5:8 scaffold1710 SAMTools SNP 698159 698159 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C1%2C41%2C3%3BMQ%3D45%3BFQ%3D-86%3BPV4%3D0.57%2C0.18%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C59%2C0:99 scaffold1710 SAMTools SNP 698564 698564 58.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C5%2C0:9 scaffold1710 SAMTools SNP 698737 698737 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D27%3BFQ%3D7.01%3BPV4%3D0.29%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C40:34 scaffold1710 SAMTools SNP 698783 698783 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1710 SAMTools SNP 698791 698791 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1710 SAMTools SNP 741657 741657 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1710 SAMTools SNP 741765 741765 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1710 SAMTools SNP 741990 741990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1710 SAMTools SNP 742026 742026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C6%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1710 SAMTools SNP 742061 742061 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1710 SAMTools SNP 744481 744481 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C16%2C37%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C0.00045%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 744484 744484 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C31%2C76%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 744507 744507 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C33%2C37%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 745804 745804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1710 SAMTools SNP 745830 745830 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C1%2C88%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.00015%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1710 SAMTools SNP 745904 745904 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C50%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C201:99 scaffold1711 SAMTools SNP 1082 1082 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1711 SAMTools SNP 5802 5802 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C45%2C0:87 scaffold1711 SAMTools SNP 6588 6588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C253%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.12%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 6747 6747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C103%2C20%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 7016 7016 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1711 SAMTools SNP 7101 7101 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1711 SAMTools SNP 7249 7249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 7302 7302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 8724 8724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C23%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1711 SAMTools SNP 8994 8994 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C20%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-11%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 9024 9024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1711 SAMTools SNP 9042 9042 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C33%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 9095 9095 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1711 SAMTools SNP 9520 9520 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 9739 9739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C43%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1711 SAMTools SNP 9868 9868 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 9937 9937 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D111%2C70%2C23%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.017%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1711 SAMTools SNP 10241 10241 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C161%2C190%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 11548 11548 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C75%2C2%2C51%3BMQ%3D50%3BFQ%3D200%3BPV4%3D3.8e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1711 SAMTools SNP 19277 19277 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C3.7e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C79:82 scaffold1711 SAMTools SNP 20817 20817 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1711 SAMTools SNP 22475 22475 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1711 SAMTools SNP 26209 26209 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold1711 SAMTools SNP 26444 26444 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C36%2C0:69 scaffold1711 SAMTools SNP 27372 27372 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C27%2C0:27 scaffold1711 SAMTools SNP 30196 30196 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1711 SAMTools SNP 30244 30244 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1711 SAMTools SNP 30261 30261 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0041%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1711 SAMTools SNP 30301 30301 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C47%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 30303 30303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C19%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 32233 32233 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C48%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1711 SAMTools SNP 32258 32258 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.15%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1711 SAMTools SNP 32272 32272 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C25%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1711 SAMTools SNP 32288 32288 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1711 SAMTools SNP 33365 33365 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1711 SAMTools SNP 34318 34318 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1711 SAMTools SNP 36704 36704 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C37:38 scaffold1711 SAMTools SNP 37708 37708 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C15%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00013%2C0.29%2C1%2C2.2e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1711 SAMTools SNP 37778 37778 75.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C18%2C0:33 scaffold1711 SAMTools SNP 37867 37867 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1711 SAMTools SNP 40328 40328 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C4.3e-07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1711 SAMTools SNP 40329 40329 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.014%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1711 SAMTools SNP 40332 40332 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.00012%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C250:89 scaffold1711 SAMTools SNP 40595 40595 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C139%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 40604 40604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C260%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 41063 41063 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C56%2C92%2C40%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.39%2C0.015%2C0.44%2C2.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 41117 41117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D836%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D277%2C110%2C299%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 41484 41484 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D738%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C305%2C68%2C202%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 41553 41553 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1711 SAMTools SNP 42091 42091 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 45236 45236 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1711 SAMTools SNP 56839 56839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C112%2C33%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 60844 60844 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 72025 72025 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C81%2C76%2C6%3BMQ%3D39%3BFQ%3D185%3BPV4%3D6e-14%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C212:99 scaffold1711 SAMTools SNP 72040 72040 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C104%2C0%2C28%3BMQ%3D30%3BFQ%3D73%3BPV4%3D0.35%2C0.11%2C1%2C1.1e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1711 SAMTools SNP 72780 72780 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C51%2C26%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 72984 72984 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 78594 78594 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 78650 78650 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 81172 81172 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.095%2C2e-05%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C157:70 scaffold1711 SAMTools SNP 82645 82645 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1711 SAMTools SNP 83194 83194 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1711 SAMTools SNP 83197 83197 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1711 SAMTools SNP 125828 125828 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1711 SAMTools SNP 127934 127934 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 216614 216614 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 217820 217820 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1711 SAMTools SNP 234460 234460 38.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1711 SAMTools SNP 237456 237456 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.3e-08%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C71:30 scaffold1711 SAMTools SNP 239499 239499 60.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold1711 SAMTools SNP 239658 239658 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1711 SAMTools SNP 259139 259139 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 259239 259239 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C230:39 scaffold1711 SAMTools SNP 262758 262758 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1711 SAMTools SNP 264506 264506 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.37%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C222:99 scaffold1711 SAMTools SNP 265488 265488 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1711 SAMTools SNP 265513 265513 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1711 SAMTools SNP 265548 265548 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1711 SAMTools SNP 265861 265861 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1711 SAMTools SNP 268180 268180 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 268399 268399 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1711 SAMTools SNP 268462 268462 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1711 SAMTools SNP 268643 268643 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1711 SAMTools SNP 268831 268831 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1711 SAMTools SNP 268846 268846 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1711 SAMTools SNP 269044 269044 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1711 SAMTools SNP 269062 269062 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1711 SAMTools SNP 269534 269534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C15%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1711 SAMTools SNP 269566 269566 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.23%2C0.012%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1711 SAMTools SNP 269799 269799 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.66%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1711 SAMTools SNP 271006 271006 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 275430 275430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C1%2C76%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0045%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 279651 279651 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1711 SAMTools SNP 281875 281875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C352%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 285086 285086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C21%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 288046 288046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1711 SAMTools SNP 288362 288362 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 291408 291408 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C6%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 291802 291802 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C52%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 291838 291838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C20%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 291847 291847 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C34%2C0%2C19%3BMQ%3D50%3BFQ%3D132%3BPV4%3D6.5e-05%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1711 SAMTools SNP 291940 291940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-08%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 292853 292853 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C32:35 scaffold1711 SAMTools SNP 293308 293308 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C23%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.021%2C8.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1711 SAMTools SNP 294616 294616 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C60%2C0:99 scaffold1711 SAMTools SNP 294624 294624 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C6%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.097%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1711 SAMTools SNP 294679 294679 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C14%2C12%3BMQ%3D50%3BFQ%3D95.9%3BPV4%3D0.013%2C2.4e-35%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C139:99 scaffold1711 SAMTools SNP 294836 294836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1711 SAMTools SNP 294884 294884 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C5%2C78%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.27%2C2.4e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1711 SAMTools SNP 299936 299936 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1711 SAMTools SNP 299948 299948 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 301560 301560 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1711 SAMTools SNP 302596 302596 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 302816 302816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 302834 302834 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1711 SAMTools SNP 303031 303031 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1711 SAMTools SNP 303313 303313 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold1711 SAMTools SNP 303332 303332 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1711 SAMTools SNP 303774 303774 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 303960 303960 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1711 SAMTools SNP 304476 304476 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 304500 304500 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 305524 305524 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 305787 305787 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 307257 307257 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 307383 307383 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1711 SAMTools SNP 307710 307710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 307720 307720 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold1711 SAMTools SNP 307882 307882 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 308103 308103 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 308134 308134 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1711 SAMTools SNP 311782 311782 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 312558 312558 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 313378 313378 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 313626 313626 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D46%3BFQ%3D16.1%3BPV4%3D0.47%2C0.058%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C112:46 scaffold1711 SAMTools SNP 315755 315755 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1711 SAMTools SNP 315777 315777 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1711 SAMTools SNP 315801 315801 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1711 SAMTools SNP 316048 316048 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 316725 316725 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1711 SAMTools SNP 374175 374175 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1711 SAMTools SNP 377108 377108 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1711 SAMTools SNP 379441 379441 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1711 SAMTools SNP 380965 380965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1711 SAMTools SNP 383125 383125 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 383164 383164 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1711 SAMTools SNP 383939 383939 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C36%2C0:69 scaffold1711 SAMTools SNP 383965 383965 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 383974 383974 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1711 SAMTools SNP 384001 384001 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1711 SAMTools SNP 384013 384013 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1711 SAMTools SNP 388575 388575 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1711 SAMTools SNP 388707 388707 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1711 SAMTools SNP 389175 389175 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1711 SAMTools SNP 390304 390304 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1711 SAMTools SNP 392052 392052 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1711 SAMTools SNP 394951 394951 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1711 SAMTools SNP 395014 395014 96.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold1711 SAMTools SNP 395553 395553 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1711 SAMTools SNP 395788 395788 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C8.6e-24%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1711 SAMTools SNP 396657 396657 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C79:31 scaffold1711 SAMTools SNP 396822 396822 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1711 SAMTools SNP 396999 396999 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.089%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold1711 SAMTools SNP 397851 397851 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C24%2C0:45 scaffold1711 SAMTools SNP 398609 398609 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.4%2C0.00036%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C85:42 scaffold1711 SAMTools SNP 398712 398712 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1711 SAMTools SNP 398718 398718 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1711 SAMTools SNP 400575 400575 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1711 SAMTools SNP 400596 400596 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1711 SAMTools SNP 404345 404345 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C5%2C14%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C4.9e-42%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1711 SAMTools SNP 404383 404383 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1711 SAMTools SNP 405659 405659 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.3e-10%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C202:59 scaffold1711 SAMTools SNP 405755 405755 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C33%2C0:63 scaffold1711 SAMTools SNP 406430 406430 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C45%2C5%2C44%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.12%2C5.8e-61%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1711 SAMTools SNP 406895 406895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 407300 407300 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C9%2C11%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.12%2C2e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1711 SAMTools SNP 407953 407953 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C15%2C10%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.53%2C3.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1711 SAMTools SNP 408324 408324 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.7e-71%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1711 SAMTools SNP 408368 408368 35.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold1711 SAMTools SNP 408746 408746 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1711 SAMTools SNP 409631 409631 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.63%2C5.2e-14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1711 SAMTools SNP 409763 409763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C21%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.32%2C0.16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold1711 SAMTools SNP 409955 409955 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1711 SAMTools SNP 410077 410077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C21%2C42%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1711 SAMTools SNP 410293 410293 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.071%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1711 SAMTools SNP 410349 410349 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C16%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1711 SAMTools SNP 410509 410509 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.21%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C220:99 scaffold1711 SAMTools SNP 420067 420067 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 2506 2506 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1713 SAMTools SNP 2732 2732 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 2811 2811 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1713 SAMTools SNP 2906 2906 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C17%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1713 SAMTools SNP 4751 4751 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1713 SAMTools SNP 4800 4800 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 8342 8342 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C14%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.00024%2C2.1e-05%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1713 SAMTools SNP 10666 10666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1713 SAMTools SNP 10688 10688 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C27%2C0:51 scaffold1713 SAMTools SNP 10789 10789 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C8%2C14%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.096%2C9e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1713 SAMTools SNP 10882 10882 55.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1713 SAMTools SNP 10945 10945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C23%2C156%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1713 SAMTools SNP 12283 12283 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1713 SAMTools SNP 12317 12317 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C50%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1713 SAMTools SNP 12349 12349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1713 SAMTools SNP 13982 13982 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.26%2C0.0028%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1713 SAMTools SNP 14023 14023 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1713 SAMTools SNP 18212 18212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C47%2C40%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.48%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1713 SAMTools SNP 18898 18898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C42%2C49%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1713 SAMTools SNP 19236 19236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1713 SAMTools SNP 19702 19702 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C84%2C0:99 scaffold1713 SAMTools SNP 20379 20379 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C255%2C0:99 scaffold1713 SAMTools SNP 45099 45099 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 45134 45134 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1713 SAMTools SNP 45807 45807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 45808 45808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1713 SAMTools SNP 46265 46265 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1713 SAMTools SNP 46268 46268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1713 SAMTools SNP 46468 46468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1713 SAMTools SNP 46531 46531 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1713 SAMTools SNP 46532 46532 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1713 SAMTools SNP 48234 48234 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1713 SAMTools SNP 49548 49548 90 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C39%2C0:75 scaffold1713 SAMTools SNP 53233 53233 29.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold1713 SAMTools SNP 53824 53824 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C36%2C0:69 scaffold1713 SAMTools SNP 55360 55360 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1713 SAMTools SNP 55414 55414 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1713 SAMTools SNP 56515 56515 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1713 SAMTools SNP 57077 57077 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1713 SAMTools SNP 60261 60261 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C39%2C0:75 scaffold1713 SAMTools SNP 60343 60343 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C63%2C0:99 scaffold1713 SAMTools SNP 60834 60834 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1713 SAMTools SNP 60988 60988 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1713 SAMTools SNP 61015 61015 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1713 SAMTools SNP 61252 61252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1713 SAMTools SNP 61312 61312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1713 SAMTools SNP 62479 62479 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C55%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1713 SAMTools SNP 62615 62615 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1713 SAMTools SNP 62946 62946 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1713 SAMTools SNP 65744 65744 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1713 SAMTools SNP 66398 66398 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1713 SAMTools SNP 85235 85235 23.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1713 SAMTools SNP 87119 87119 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1713 SAMTools SNP 87164 87164 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1714 SAMTools SNP 2480 2480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 2489 2489 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 3988 3988 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 4008 4008 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 6381 6381 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C221:31 scaffold1714 SAMTools SNP 6606 6606 33.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1714 SAMTools SNP 19098 19098 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.31%2C0.0068%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1714 SAMTools SNP 19431 19431 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 28982 28982 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1714 SAMTools SNP 144757 144757 30.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C8.9e-09%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C5:8 scaffold1714 SAMTools SNP 144817 144817 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C54%2C0:99 scaffold1714 SAMTools SNP 225110 225110 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1714 SAMTools SNP 227061 227061 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold1714 SAMTools SNP 248072 248072 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.68%2C1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1714 SAMTools SNP 249661 249661 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.045%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1714 SAMTools SNP 253566 253566 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 254888 254888 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1714 SAMTools SNP 255486 255486 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1714 SAMTools SNP 255934 255934 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1714 SAMTools SNP 260499 260499 98 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C124%2C213%2C0%2C201:45 scaffold1714 SAMTools SNP 261654 261654 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 261659 261659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 262846 262846 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1714 SAMTools SNP 263189 263189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1714 SAMTools SNP 264714 264714 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1714 SAMTools SNP 265063 265063 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C162:72 scaffold1714 SAMTools SNP 265066 265066 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C156:99 scaffold1714 SAMTools SNP 265113 265113 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C163:88 scaffold1714 SAMTools SNP 265192 265192 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1714 SAMTools SNP 279944 279944 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C87%3BMQ%3D50%3BFQ%3D-274%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1714 SAMTools SNP 280248 280248 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1714 SAMTools SNP 280258 280258 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.32%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1714 SAMTools SNP 281533 281533 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1714 SAMTools SNP 282181 282181 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1714 SAMTools SNP 282208 282208 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1714 SAMTools SNP 282301 282301 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 282540 282540 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.29%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C162:99 scaffold1714 SAMTools SNP 286994 286994 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold1714 SAMTools SNP 287622 287622 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C3.9e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C240:80 scaffold1714 SAMTools SNP 288184 288184 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1714 SAMTools SNP 288198 288198 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1714 SAMTools SNP 288489 288489 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1714 SAMTools SNP 288602 288602 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1714 SAMTools SNP 289322 289322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1714 SAMTools SNP 290001 290001 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1714 SAMTools SNP 290411 290411 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C15%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.04%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1714 SAMTools SNP 290450 290450 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1714 SAMTools SNP 290961 290961 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1714 SAMTools SNP 291036 291036 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.39%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1714 SAMTools SNP 291995 291995 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold1714 SAMTools SNP 292013 292013 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1714 SAMTools SNP 293172 293172 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1714 SAMTools SNP 293993 293993 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1714 SAMTools SNP 294002 294002 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1714 SAMTools SNP 295005 295005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1714 SAMTools SNP 295405 295405 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C7%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1714 SAMTools SNP 298787 298787 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1714 SAMTools SNP 299400 299400 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1714 SAMTools SNP 299460 299460 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1714 SAMTools SNP 300318 300318 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.28%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1714 SAMTools SNP 300453 300453 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.63%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1714 SAMTools SNP 301001 301001 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1714 SAMTools SNP 301018 301018 22 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C47%2C38%2C58%2C0%2C49:15 scaffold1714 SAMTools SNP 301114 301114 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C45%2C0:63 scaffold1714 SAMTools SNP 302668 302668 36.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1714 SAMTools SNP 302684 302684 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C33%2C0:62 scaffold1714 SAMTools SNP 305811 305811 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C72%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C235%2C0:99 scaffold1715 SAMTools SNP 21198 21198 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 21352 21352 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 47204 47204 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1715 SAMTools SNP 47222 47222 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1715 SAMTools SNP 47234 47234 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1715 SAMTools SNP 47480 47480 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1715 SAMTools SNP 47504 47504 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 47683 47683 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 47704 47704 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1715 SAMTools SNP 47736 47736 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.26%2C0.083%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1715 SAMTools SNP 47806 47806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1715 SAMTools SNP 48121 48121 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C14%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 48187 48187 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 48241 48241 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1715 SAMTools SNP 48272 48272 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C16%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C239:99 scaffold1715 SAMTools SNP 48861 48861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1715 SAMTools SNP 48912 48912 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D58.9%3BPV4%3D1%2C0.014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C104:89 scaffold1715 SAMTools SNP 48918 48918 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 49204 49204 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C100:40 scaffold1715 SAMTools SNP 50158 50158 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1715 SAMTools SNP 50203 50203 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1715 SAMTools SNP 50360 50360 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1715 SAMTools SNP 50655 50655 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 50670 50670 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 50685 50685 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 51225 51225 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 51243 51243 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1715 SAMTools SNP 51258 51258 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 51279 51279 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 51291 51291 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1715 SAMTools SNP 51808 51808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1715 SAMTools SNP 51814 51814 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.44%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1715 SAMTools SNP 51835 51835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1715 SAMTools SNP 52258 52258 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 52567 52567 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.046%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1715 SAMTools SNP 52933 52933 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1715 SAMTools SNP 53026 53026 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1715 SAMTools SNP 53041 53041 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1715 SAMTools SNP 53471 53471 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 53477 53477 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 55981 55981 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C6.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C247:99 scaffold1715 SAMTools SNP 59697 59697 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1715 SAMTools SNP 59727 59727 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1715 SAMTools SNP 63630 63630 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1715 SAMTools SNP 64865 64865 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 65171 65171 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1715 SAMTools SNP 65219 65219 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold1715 SAMTools SNP 66164 66164 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1715 SAMTools SNP 66232 66232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1715 SAMTools SNP 67093 67093 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 67180 67180 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 67451 67451 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1715 SAMTools SNP 68766 68766 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1715 SAMTools SNP 68800 68800 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1715 SAMTools SNP 68820 68820 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 68825 68825 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 68864 68864 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1715 SAMTools SNP 69641 69641 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1715 SAMTools SNP 69672 69672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 70209 70209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1715 SAMTools SNP 70332 70332 26.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold1715 SAMTools SNP 70752 70752 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1715 SAMTools SNP 71868 71868 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 75113 75113 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1715 SAMTools SNP 75128 75128 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1715 SAMTools SNP 77822 77822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 78324 78324 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1715 SAMTools SNP 78841 78841 204 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C30%2C12%2C228%2C0%2C225:33 scaffold1715 SAMTools SNP 78941 78941 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.21%2C5.6e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C182:55 scaffold1715 SAMTools SNP 80038 80038 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1715 SAMTools SNP 80059 80059 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1715 SAMTools SNP 80138 80138 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1715 SAMTools SNP 80294 80294 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1715 SAMTools SNP 81381 81381 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.043%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1715 SAMTools SNP 81393 81393 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1715 SAMTools SNP 81438 81438 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1715 SAMTools SNP 81764 81764 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1715 SAMTools SNP 81768 81768 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1715 SAMTools SNP 81775 81775 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.24%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1715 SAMTools SNP 82127 82127 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 82350 82350 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 82419 82419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1715 SAMTools SNP 82757 82757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C13%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.18%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1715 SAMTools SNP 82800 82800 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1715 SAMTools SNP 84006 84006 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1715 SAMTools SNP 88507 88507 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 88555 88555 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C213:99 scaffold1715 SAMTools SNP 89283 89283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C21%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.00086%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 89600 89600 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 89620 89620 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1715 SAMTools SNP 92319 92319 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C26%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1715 SAMTools SNP 92385 92385 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1715 SAMTools SNP 92397 92397 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1715 SAMTools SNP 92744 92744 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1715 SAMTools SNP 92992 92992 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1715 SAMTools SNP 93211 93211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C17%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 93256 93256 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1715 SAMTools SNP 93277 93277 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C7%2C42%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.43%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1715 SAMTools SNP 93456 93456 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C60%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1715 SAMTools SNP 93485 93485 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C50%2C0%2C17%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.00048%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1715 SAMTools SNP 97063 97063 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C27%2C0:46 scaffold1715 SAMTools SNP 98592 98592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C39%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold1715 SAMTools SNP 99371 99371 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1715 SAMTools SNP 100538 100538 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C11%2C19%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.073%2C7.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1715 SAMTools SNP 100577 100577 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.33%2C0.0027%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C99:82 scaffold1715 SAMTools SNP 102865 102865 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1715 SAMTools SNP 103479 103479 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 103488 103488 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1715 SAMTools SNP 105420 105420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C2.4e-08%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 105438 105438 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C6%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.0014%2C9.5e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1715 SAMTools SNP 105933 105933 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 105957 105957 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1715 SAMTools SNP 105963 105963 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1715 SAMTools SNP 106341 106341 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1715 SAMTools SNP 107363 107363 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 107877 107877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.38%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 107945 107945 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1715 SAMTools SNP 108254 108254 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.1%2C0.43%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1715 SAMTools SNP 108286 108286 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1715 SAMTools SNP 108296 108296 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 108297 108297 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 113329 113329 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C79:40 scaffold1715 SAMTools SNP 114386 114386 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.58%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1715 SAMTools SNP 114731 114731 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.5e-08%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C119:99 scaffold1715 SAMTools SNP 119404 119404 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C5.3e-10%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C172:53 scaffold1715 SAMTools SNP 119475 119475 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 119800 119800 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold1715 SAMTools SNP 119937 119937 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C195:98 scaffold1715 SAMTools SNP 119943 119943 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1715 SAMTools SNP 119952 119952 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1715 SAMTools SNP 125145 125145 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C0.38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1715 SAMTools SNP 125170 125170 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 126840 126840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 126878 126878 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.49%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1715 SAMTools SNP 126882 126882 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C165:30 scaffold1715 SAMTools SNP 126887 126887 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C100:49 scaffold1715 SAMTools SNP 127302 127302 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold1715 SAMTools SNP 127746 127746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C20%2C4%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1715 SAMTools SNP 129023 129023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1715 SAMTools SNP 133984 133984 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C39%2C0:75 scaffold1715 SAMTools SNP 142201 142201 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 142216 142216 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.14%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C212:99 scaffold1715 SAMTools SNP 142258 142258 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1715 SAMTools SNP 142267 142267 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1715 SAMTools SNP 143520 143520 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.58%2C0.031%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1715 SAMTools SNP 143586 143586 140 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C47%3BMQ%3D50%3BFQ%3D-169;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C82%2C117%2C0%2C96:99 scaffold1715 SAMTools SNP 143667 143667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.067%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 144997 144997 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1715 SAMTools SNP 145042 145042 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold1715 SAMTools SNP 146012 146012 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1715 SAMTools SNP 146373 146373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1715 SAMTools SNP 146403 146403 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1715 SAMTools SNP 146741 146741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1715 SAMTools SNP 146769 146769 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1715 SAMTools SNP 147364 147364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1715 SAMTools SNP 147409 147409 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 147757 147757 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C34%2C22%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 147782 147782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C7%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 148771 148771 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 148823 148823 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D556%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C531%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 153777 153777 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 153791 153791 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 153941 153941 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 166115 166115 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 166161 166161 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1715 SAMTools SNP 167179 167179 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D44%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C169:99 scaffold1715 SAMTools SNP 168419 168419 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C21%2C0%3BMQ%3D42%3BFQ%3D179%3BPV4%3D0.5%2C0.08%2C0.15%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1715 SAMTools SNP 168435 168435 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D41%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1715 SAMTools SNP 168450 168450 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C9%3BMQ%3D37%3BFQ%3D64%3BPV4%3D0.11%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C91:94 scaffold1715 SAMTools SNP 168697 168697 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C27%3BMQ%3D39%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C206:99 scaffold1715 SAMTools SNP 169517 169517 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C45%2C0:87 scaffold1715 SAMTools SNP 173426 173426 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1715 SAMTools SNP 173587 173587 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 173994 173994 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1715 SAMTools SNP 184854 184854 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 184856 184856 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 184861 184861 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1715 SAMTools SNP 185786 185786 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1715 SAMTools SNP 185788 185788 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1715 SAMTools SNP 186256 186256 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1715 SAMTools SNP 189274 189274 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 189288 189288 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.13%2C0.013%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C251:99 scaffold1715 SAMTools SNP 189304 189304 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0013%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1715 SAMTools SNP 189322 189322 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1715 SAMTools SNP 189537 189537 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1715 SAMTools SNP 191204 191204 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.25%2C0.02%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1715 SAMTools SNP 191619 191619 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 198791 198791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1715 SAMTools SNP 199367 199367 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C255%2C0:99 scaffold1715 SAMTools SNP 199687 199687 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 199693 199693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C45%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1715 SAMTools SNP 199838 199838 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.14%2C2.8e-12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1715 SAMTools SNP 200266 200266 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C14%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C160%2C0:99 scaffold1715 SAMTools SNP 200956 200956 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1715 SAMTools SNP 201370 201370 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C88%2C86%2C54%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.089%2C1.4e-159%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1715 SAMTools SNP 201719 201719 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.27%2C9.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1715 SAMTools SNP 202052 202052 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 202061 202061 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C16%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 202269 202269 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1715 SAMTools SNP 202541 202541 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1715 SAMTools SNP 202685 202685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1715 SAMTools SNP 203509 203509 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C43%2C1%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.66%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1715 SAMTools SNP 203564 203564 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.27%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1715 SAMTools SNP 203934 203934 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C41%2C19%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1715 SAMTools SNP 203979 203979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C11%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1715 SAMTools SNP 204027 204027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 204045 204045 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C2%2C16%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1715 SAMTools SNP 207250 207250 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C39%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 207268 207268 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 207544 207544 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.34%2C7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C247:61 scaffold1715 SAMTools SNP 207924 207924 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C3.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C227:99 scaffold1715 SAMTools SNP 230620 230620 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 234384 234384 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 237295 237295 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00024%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold1715 SAMTools SNP 240720 240720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 268603 268603 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C8%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.02%2C5e-05%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1715 SAMTools SNP 268661 268661 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1715 SAMTools SNP 270572 270572 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1715 SAMTools SNP 270607 270607 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1715 SAMTools SNP 277974 277974 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1715 SAMTools SNP 279517 279517 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 279539 279539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 280017 280017 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 288157 288157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C15%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1715 SAMTools SNP 288447 288447 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C32%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1715 SAMTools SNP 291386 291386 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C39%2C0:75 scaffold1715 SAMTools SNP 292654 292654 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1715 SAMTools SNP 292660 292660 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1715 SAMTools SNP 317446 317446 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 319367 319367 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1715 SAMTools SNP 319434 319434 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C7%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1715 SAMTools SNP 320049 320049 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C48%2C23%3BMQ%3D50%3BFQ%3D-211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1715 SAMTools SNP 320305 320305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1715 SAMTools SNP 321320 321320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1715 SAMTools SNP 321504 321504 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1715 SAMTools SNP 325379 325379 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1715 SAMTools SNP 328691 328691 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C48%2C0:93 scaffold1715 SAMTools SNP 329756 329756 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1715 SAMTools SNP 333307 333307 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1715 SAMTools SNP 339764 339764 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1715 SAMTools SNP 339807 339807 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1715 SAMTools SNP 354023 354023 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1715 SAMTools SNP 358272 358272 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1715 SAMTools SNP 404957 404957 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1715 SAMTools SNP 406989 406989 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C60:63 scaffold1715 SAMTools SNP 407019 407019 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1715 SAMTools SNP 407762 407762 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 407813 407813 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.072%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C173:99 scaffold1715 SAMTools SNP 408118 408118 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C163:99 scaffold1715 SAMTools SNP 408141 408141 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold1715 SAMTools SNP 411495 411495 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold1715 SAMTools SNP 411764 411764 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C248:46 scaffold1715 SAMTools SNP 411823 411823 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.014%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1715 SAMTools SNP 412277 412277 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0015%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1715 SAMTools SNP 412543 412543 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 412566 412566 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 412835 412835 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1715 SAMTools SNP 412844 412844 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1715 SAMTools SNP 413175 413175 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 415137 415137 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1715 SAMTools SNP 415164 415164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 415437 415437 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 415453 415453 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.13%2C0.00016%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1715 SAMTools SNP 416172 416172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1715 SAMTools SNP 416413 416413 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1715 SAMTools SNP 417774 417774 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.17%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1715 SAMTools SNP 418642 418642 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C8%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.0044%2C1.7e-06%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1715 SAMTools SNP 418684 418684 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1715 SAMTools SNP 418851 418851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C29%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1715 SAMTools SNP 418905 418905 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1715 SAMTools SNP 419786 419786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1715 SAMTools SNP 419810 419810 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1715 SAMTools SNP 419993 419993 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C60:63 scaffold1715 SAMTools SNP 424365 424365 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 427154 427154 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 427516 427516 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1715 SAMTools SNP 437668 437668 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C28%3BMQ%3D43%3BFQ%3D204%3BPV4%3D0.056%2C1%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1715 SAMTools SNP 438290 438290 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1715 SAMTools SNP 438553 438553 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0035%2C1.3e-09%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C218:50 scaffold1715 SAMTools SNP 439866 439866 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 449694 449694 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C42%2C0:81 scaffold1715 SAMTools SNP 449959 449959 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 449972 449972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1715 SAMTools SNP 450194 450194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1715 SAMTools SNP 459008 459008 50.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1715 SAMTools SNP 459101 459101 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold1715 SAMTools SNP 464296 464296 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1715 SAMTools SNP 469374 469374 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1715 SAMTools SNP 469994 469994 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1715 SAMTools SNP 474855 474855 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C21%2C0%2C35%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1e-09%2C1.4e-08%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1715 SAMTools SNP 475434 475434 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C4%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1715 SAMTools SNP 475443 475443 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C3%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.68%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1715 SAMTools SNP 475456 475456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C26%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1715 SAMTools SNP 475785 475785 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1715 SAMTools SNP 475803 475803 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1715 SAMTools SNP 476624 476624 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0366%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C20%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1715 SAMTools SNP 476726 476726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1715 SAMTools SNP 477100 477100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1715 SAMTools SNP 477155 477155 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1715 SAMTools SNP 485699 485699 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1715 SAMTools SNP 488108 488108 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 488432 488432 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1715 SAMTools SNP 488493 488493 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 489086 489086 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1715 SAMTools SNP 489133 489133 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C88:62 scaffold1715 SAMTools SNP 489136 489136 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C49:52 scaffold1715 SAMTools SNP 489488 489488 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1715 SAMTools SNP 490197 490197 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1715 SAMTools SNP 490271 490271 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 490380 490380 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1715 SAMTools SNP 490708 490708 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1715 SAMTools SNP 491416 491416 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1715 SAMTools SNP 492917 492917 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1715 SAMTools SNP 492938 492938 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1715 SAMTools SNP 494288 494288 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold1715 SAMTools SNP 494294 494294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1715 SAMTools SNP 494303 494303 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1715 SAMTools SNP 495098 495098 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1715 SAMTools SNP 495345 495345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 495365 495365 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 496583 496583 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1715 SAMTools SNP 497269 497269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 509003 509003 34.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1715 SAMTools SNP 518970 518970 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C64:43 scaffold1715 SAMTools SNP 519009 519009 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1715 SAMTools SNP 519656 519656 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1715 SAMTools SNP 520090 520090 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1715 SAMTools SNP 520094 520094 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 520223 520223 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 520242 520242 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1715 SAMTools SNP 522111 522111 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 527253 527253 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 527269 527269 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 530564 530564 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 530586 530586 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 530698 530698 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1715 SAMTools SNP 532228 532228 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 532472 532472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 532615 532615 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 533504 533504 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 533654 533654 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 533675 533675 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 533697 533697 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 540785 540785 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C1%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.015%2C1.9e-06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1715 SAMTools SNP 540851 540851 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.28%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1715 SAMTools SNP 540858 540858 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.63%2C0.21%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1715 SAMTools SNP 541277 541277 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1715 SAMTools SNP 541376 541376 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1715 SAMTools SNP 542169 542169 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1715 SAMTools SNP 542253 542253 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1715 SAMTools SNP 543087 543087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C60%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1715 SAMTools SNP 543183 543183 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1715 SAMTools SNP 543186 543186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1715 SAMTools SNP 543338 543338 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1715 SAMTools SNP 543374 543374 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1715 SAMTools SNP 545443 545443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1715 SAMTools SNP 545461 545461 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 549731 549731 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C63%2C0:99 scaffold1715 SAMTools SNP 550217 550217 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C48%2C0:93 scaffold1715 SAMTools SNP 551289 551289 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold1715 SAMTools SNP 552437 552437 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1715 SAMTools SNP 552483 552483 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold1715 SAMTools SNP 553458 553458 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1715 SAMTools SNP 554086 554086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1715 SAMTools SNP 557025 557025 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1715 SAMTools SNP 557099 557099 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C27%2C0:51 scaffold1715 SAMTools SNP 557243 557243 27.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold1715 SAMTools SNP 558567 558567 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold1715 SAMTools SNP 558632 558632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1715 SAMTools SNP 559698 559698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1715 SAMTools SNP 560050 560050 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1715 SAMTools SNP 560057 560057 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1715 SAMTools SNP 560731 560731 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1715 SAMTools SNP 560755 560755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1715 SAMTools SNP 560768 560768 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1715 SAMTools SNP 561290 561290 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold1715 SAMTools SNP 562458 562458 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C11%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 563535 563535 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C0%2C12%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1715 SAMTools SNP 563592 563592 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.31%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1715 SAMTools SNP 563605 563605 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.54%2C0.0027%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1715 SAMTools SNP 563628 563628 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1715 SAMTools SNP 565179 565179 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1715 SAMTools SNP 566927 566927 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C6%3BMQ%3D49%3BFQ%3D-120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1715 SAMTools SNP 587138 587138 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C141%2C0:99 scaffold1715 SAMTools SNP 587276 587276 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C46%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C190%2C0:99 scaffold1715 SAMTools SNP 588380 588380 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 588557 588557 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.26%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 588596 588596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C18%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1715 SAMTools SNP 604298 604298 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold1715 SAMTools SNP 604319 604319 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold1715 SAMTools SNP 604341 604341 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1717 SAMTools SNP 37069 37069 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1717 SAMTools SNP 51876 51876 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1717 SAMTools SNP 54714 54714 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 54830 54830 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold1717 SAMTools SNP 60343 60343 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold1717 SAMTools SNP 60433 60433 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1717 SAMTools SNP 63635 63635 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1717 SAMTools SNP 68618 68618 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 68835 68835 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1717 SAMTools SNP 68841 68841 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1717 SAMTools SNP 68883 68883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 68898 68898 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 71338 71338 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 71353 71353 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1717 SAMTools SNP 73475 73475 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 73842 73842 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold1717 SAMTools SNP 73845 73845 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold1717 SAMTools SNP 73848 73848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1717 SAMTools SNP 75467 75467 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C216:99 scaffold1717 SAMTools SNP 91158 91158 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 96604 96604 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold1717 SAMTools SNP 96927 96927 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.18%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1717 SAMTools SNP 96950 96950 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1717 SAMTools SNP 96989 96989 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C4%2C13%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1717 SAMTools SNP 96998 96998 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C61%2C9%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.69%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1717 SAMTools SNP 103132 103132 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C57%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1717 SAMTools SNP 103265 103265 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C34%2C37%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00011%2C0.23%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1717 SAMTools SNP 105311 105311 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1717 SAMTools SNP 106074 106074 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1717 SAMTools SNP 106083 106083 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1717 SAMTools SNP 106146 106146 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C42%2C0:80 scaffold1717 SAMTools SNP 107165 107165 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1717 SAMTools SNP 107405 107405 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1717 SAMTools SNP 111092 111092 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1717 SAMTools SNP 111940 111940 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C76%2C0%2C38%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C7.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1717 SAMTools SNP 111956 111956 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C62%2C0%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C203:99 scaffold1717 SAMTools SNP 111957 111957 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C27%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C188:99 scaffold1717 SAMTools SNP 112631 112631 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1717 SAMTools SNP 112649 112649 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1717 SAMTools SNP 112878 112878 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 113501 113501 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C9.9e-20%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C19%2C0:35 scaffold1717 SAMTools SNP 114681 114681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1717 SAMTools SNP 117172 117172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1717 SAMTools SNP 117193 117193 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1717 SAMTools SNP 117688 117688 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1717 SAMTools SNP 117711 117711 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.46%2C0.001%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C193:52 scaffold1717 SAMTools SNP 117712 117712 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.46%2C9.5e-05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C195:52 scaffold1717 SAMTools SNP 119338 119338 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 119881 119881 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1717 SAMTools SNP 119890 119890 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 122240 122240 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1717 SAMTools SNP 123121 123121 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C0%2C14%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.58%2C2.8e-05%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1717 SAMTools SNP 123138 123138 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C38%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1717 SAMTools SNP 123542 123542 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 123572 123572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-05%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 123575 123575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 127328 127328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 127367 127367 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 127388 127388 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C11%2C10%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1717 SAMTools SNP 127475 127475 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.012%2C9.5e-14%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C211:99 scaffold1717 SAMTools SNP 127978 127978 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1717 SAMTools SNP 127999 127999 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 133713 133713 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1717 SAMTools SNP 133782 133782 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 135470 135470 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1717 SAMTools SNP 135493 135493 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold1717 SAMTools SNP 135763 135763 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C6.2e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C99:99 scaffold1717 SAMTools SNP 145210 145210 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1717 SAMTools SNP 145400 145400 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1717 SAMTools SNP 145439 145439 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 145454 145454 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 145762 145762 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1717 SAMTools SNP 145810 145810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1717 SAMTools SNP 146671 146671 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1717 SAMTools SNP 147143 147143 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1717 SAMTools SNP 147163 147163 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C70%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1717 SAMTools SNP 165296 165296 12.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1717 SAMTools SNP 165451 165451 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1717 SAMTools SNP 168783 168783 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 173523 173523 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1717 SAMTools SNP 175608 175608 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.022%2C2.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1717 SAMTools SNP 175626 175626 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C19%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.18%2C1.2e-32%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1717 SAMTools SNP 175671 175671 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C41%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1717 SAMTools SNP 175968 175968 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.069%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C238:99 scaffold1717 SAMTools SNP 176001 176001 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.29%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1717 SAMTools SNP 176004 176004 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.64%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1717 SAMTools SNP 177435 177435 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1717 SAMTools SNP 177456 177456 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C0.025%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C251:99 scaffold1717 SAMTools SNP 177914 177914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 177959 177959 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1717 SAMTools SNP 178049 178049 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C5.1e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C184:99 scaffold1717 SAMTools SNP 178088 178088 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1717 SAMTools SNP 178091 178091 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1717 SAMTools SNP 178623 178623 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1717 SAMTools SNP 178686 178686 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C1%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D1%2C6.6e-05%2C0.21%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C150:30 scaffold1717 SAMTools SNP 178754 178754 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C3%3BMQ%3D47%3BFQ%3D146%3BPV4%3D1%2C1%2C0.052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1717 SAMTools SNP 180046 180046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1717 SAMTools SNP 185960 185960 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C6%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.095%2C0.00073%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 191239 191239 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1717 SAMTools SNP 194873 194873 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C22%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1717 SAMTools SNP 194880 194880 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 206707 206707 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1717 SAMTools SNP 212052 212052 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.21%2C0.029%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C219:46 scaffold1717 SAMTools SNP 212070 212070 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold1717 SAMTools SNP 215189 215189 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C252:99 scaffold1717 SAMTools SNP 220061 220061 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1717 SAMTools SNP 220157 220157 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C36%2C0:69 scaffold1717 SAMTools SNP 220939 220939 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1717 SAMTools SNP 221464 221464 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1717 SAMTools SNP 221477 221477 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1717 SAMTools SNP 222450 222450 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 223971 223971 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1717 SAMTools SNP 224002 224002 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.28%2C0.23%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C241:99 scaffold1717 SAMTools SNP 226282 226282 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1717 SAMTools SNP 226312 226312 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1717 SAMTools SNP 228441 228441 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1717 SAMTools SNP 228992 228992 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1717 SAMTools SNP 229864 229864 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 230735 230735 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1717 SAMTools SNP 230756 230756 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.15%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1717 SAMTools SNP 230828 230828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1717 SAMTools SNP 230837 230837 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1717 SAMTools SNP 230852 230852 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 231686 231686 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C36%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1717 SAMTools SNP 231701 231701 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C24%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.00036%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1717 SAMTools SNP 232019 232019 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1717 SAMTools SNP 232062 232062 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C12%2C24%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.067%2C1.6e-29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C91:73 scaffold1717 SAMTools SNP 232928 232928 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.41%2C0.28%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1717 SAMTools SNP 234888 234888 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1717 SAMTools SNP 236243 236243 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 236301 236301 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 236302 236302 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1717 SAMTools SNP 242029 242029 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 243629 243629 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 278493 278493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1717 SAMTools SNP 278813 278813 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1717 SAMTools SNP 278861 278861 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1717 SAMTools SNP 281721 281721 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.18%2C6.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1717 SAMTools SNP 282461 282461 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C9%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.53%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1717 SAMTools SNP 283249 283249 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1717 SAMTools SNP 283318 283318 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C15%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.66%2C8.8e-12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1717 SAMTools SNP 283387 283387 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C54%2C0:99 scaffold1717 SAMTools SNP 283679 283679 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1717 SAMTools SNP 284755 284755 35.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1717 SAMTools SNP 284976 284976 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C6.5e-08%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold1717 SAMTools SNP 285202 285202 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C15%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0048%2C7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C97:48 scaffold1717 SAMTools SNP 285275 285275 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C45%2C0:77 scaffold1717 SAMTools SNP 286744 286744 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold1719 SAMTools SNP 90108 90108 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 92131 92131 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.083%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold1719 SAMTools SNP 97257 97257 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.37%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1719 SAMTools SNP 98218 98218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1719 SAMTools SNP 98253 98253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1719 SAMTools SNP 99177 99177 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1719 SAMTools SNP 99200 99200 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C30%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C201:72 scaffold1719 SAMTools SNP 99207 99207 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C22%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1719 SAMTools SNP 100407 100407 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1719 SAMTools SNP 100746 100746 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.065%2C0.14%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1719 SAMTools SNP 100750 100750 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C54%2C5%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1719 SAMTools SNP 100802 100802 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.31%2C8.9e-06%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1719 SAMTools SNP 102702 102702 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1719 SAMTools SNP 106579 106579 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C10%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.15%2C9.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C134:86 scaffold1719 SAMTools SNP 106861 106861 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1719 SAMTools SNP 106879 106879 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1719 SAMTools SNP 107633 107633 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1719 SAMTools SNP 107987 107987 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold1719 SAMTools SNP 107996 107996 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1719 SAMTools SNP 108020 108020 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1719 SAMTools SNP 109735 109735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1719 SAMTools SNP 110211 110211 30.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold1719 SAMTools SNP 110494 110494 19.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold1719 SAMTools SNP 110623 110623 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1719 SAMTools SNP 110635 110635 17.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1719 SAMTools SNP 110818 110818 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold1719 SAMTools SNP 110950 110950 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1719 SAMTools SNP 110959 110959 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C50%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1719 SAMTools SNP 117908 117908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 117939 117939 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.12%2C8.2e-16%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1719 SAMTools SNP 118364 118364 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C67%2C24%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 118412 118412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C69%2C24%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 118439 118439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1719 SAMTools SNP 118445 118445 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1719 SAMTools SNP 118463 118463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C69%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1719 SAMTools SNP 118496 118496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 119916 119916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C3%2C88%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.0016%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 120687 120687 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1719 SAMTools SNP 121926 121926 25.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1719 SAMTools SNP 122117 122117 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C8.8e-13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C69:28 scaffold1719 SAMTools SNP 128376 128376 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1719 SAMTools SNP 128428 128428 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1719 SAMTools SNP 128979 128979 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.018%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1719 SAMTools SNP 129033 129033 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 129621 129621 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1719 SAMTools SNP 129651 129651 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1719 SAMTools SNP 130093 130093 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1719 SAMTools SNP 130114 130114 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1719 SAMTools SNP 130117 130117 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1719 SAMTools SNP 130592 130592 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.075%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C253:99 scaffold1719 SAMTools SNP 130599 130599 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.042%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold1719 SAMTools SNP 131239 131239 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1719 SAMTools SNP 135395 135395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C14%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1719 SAMTools SNP 136357 136357 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1719 SAMTools SNP 140591 140591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 140610 140610 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C25%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1719 SAMTools SNP 140808 140808 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1719 SAMTools SNP 140828 140828 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1719 SAMTools SNP 140831 140831 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1719 SAMTools SNP 141078 141078 7.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1719 SAMTools SNP 143843 143843 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C60%2C0:99 scaffold1719 SAMTools SNP 143873 143873 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C54%2C0:99 scaffold1719 SAMTools SNP 144095 144095 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 152653 152653 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1719 SAMTools SNP 168693 168693 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1719 SAMTools SNP 169092 169092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 169111 169111 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 175989 175989 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C63%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1719 SAMTools SNP 176008 176008 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C64%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1719 SAMTools SNP 176117 176117 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.0046%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1719 SAMTools SNP 176147 176147 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1719 SAMTools SNP 176642 176642 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C23%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C232%2C0:99 scaffold1719 SAMTools SNP 177016 177016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C43%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1719 SAMTools SNP 177070 177070 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.25%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C62:43 scaffold1719 SAMTools SNP 177518 177518 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C111%2C0:99 scaffold1719 SAMTools SNP 177871 177871 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.55%2C0.0038%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1719 SAMTools SNP 177902 177902 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1719 SAMTools SNP 184537 184537 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1719 SAMTools SNP 185936 185936 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1719 SAMTools SNP 193525 193525 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1719 SAMTools SNP 200016 200016 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1719 SAMTools SNP 200043 200043 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1719 SAMTools SNP 200499 200499 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 200514 200514 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 200601 200601 18.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold1719 SAMTools SNP 200619 200619 25.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1719 SAMTools SNP 200738 200738 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1719 SAMTools SNP 201319 201319 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C29:32 scaffold1719 SAMTools SNP 201690 201690 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1719 SAMTools SNP 201951 201951 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C6%3BMQ%3D48%3BFQ%3D165%3BPV4%3D0.6%2C8.1e-13%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C192:99 scaffold1719 SAMTools SNP 202008 202008 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C5e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C26:29 scaffold1719 SAMTools SNP 202101 202101 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C23:26 scaffold1719 SAMTools SNP 216948 216948 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C2.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1719 SAMTools SNP 217155 217155 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C2.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1719 SAMTools SNP 217273 217273 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C36%2C0:69 scaffold1719 SAMTools SNP 217365 217365 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 239485 239485 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1719 SAMTools SNP 239503 239503 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1719 SAMTools SNP 251351 251351 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1719 SAMTools SNP 254084 254084 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C249:99 scaffold1719 SAMTools SNP 265821 265821 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C7.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1719 SAMTools SNP 272532 272532 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C69%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1719 SAMTools SNP 274872 274872 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C0%2C25%3BMQ%3D50%3BFQ%3D211%3BPV4%3D5e-10%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1719 SAMTools SNP 275019 275019 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 280587 280587 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1719 SAMTools SNP 280839 280839 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1719 SAMTools SNP 285235 285235 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1719 SAMTools SNP 285300 285300 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 285520 285520 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1719 SAMTools SNP 285729 285729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1719 SAMTools SNP 288446 288446 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C12%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C5.5e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1719 SAMTools SNP 288683 288683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1719 SAMTools SNP 288704 288704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1719 SAMTools SNP 288758 288758 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1719 SAMTools SNP 292768 292768 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1719 SAMTools SNP 292780 292780 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1719 SAMTools SNP 292800 292800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C5.7e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1719 SAMTools SNP 294882 294882 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold1719 SAMTools SNP 306323 306323 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C7.4e-14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C124:37 scaffold1719 SAMTools SNP 310647 310647 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1719 SAMTools SNP 310668 310668 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1719 SAMTools SNP 319767 319767 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C41:44 scaffold1719 SAMTools SNP 320833 320833 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D0.52%2C4.3e-10%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1719 SAMTools SNP 328933 328933 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C45%2C0:87 scaffold1719 SAMTools SNP 329024 329024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1719 SAMTools SNP 329142 329142 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1719 SAMTools SNP 329619 329619 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 330917 330917 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 333808 333808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 334182 334182 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1719 SAMTools SNP 334203 334203 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1719 SAMTools SNP 334233 334233 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 334290 334290 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1719 SAMTools SNP 334482 334482 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1719 SAMTools SNP 336180 336180 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D1%2C7.3e-09%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C107:31 scaffold1719 SAMTools SNP 336373 336373 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D32%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C30%2C0:57 scaffold1719 SAMTools SNP 338886 338886 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1719 SAMTools SNP 338892 338892 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1719 SAMTools SNP 345570 345570 7.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D35%3BFQ%3D-37%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C10%2C0:12 scaffold1719 SAMTools SNP 346307 346307 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1719 SAMTools SNP 346379 346379 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1719 SAMTools SNP 346400 346400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1719 SAMTools SNP 347790 347790 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 347794 347794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1719 SAMTools SNP 349112 349112 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1719 SAMTools SNP 352264 352264 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1719 SAMTools SNP 352280 352280 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.029%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C107:39 scaffold1719 SAMTools SNP 352329 352329 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.5e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1719 SAMTools SNP 352360 352360 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1719 SAMTools SNP 352533 352533 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1719 SAMTools SNP 364401 364401 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C33%2C0:53 scaffold1719 SAMTools SNP 365231 365231 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold172 SAMTools SNP 15974 15974 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 16046 16046 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 24283 24283 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold172 SAMTools SNP 36913 36913 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold172 SAMTools SNP 61841 61841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D923%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D352%2C94%2C92%2C269%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-54%2C1%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 62598 62598 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D989%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C217%2C245%2C350%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63043 63043 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C171%2C65%2C243%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63079 63079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D512%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C142%2C78%2C227%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63106 63106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C44%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63121 63121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C48%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.49%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63127 63127 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C20%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 63473 63473 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C14%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C245:99 scaffold172 SAMTools SNP 65847 65847 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.3%2C8.7e-16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold172 SAMTools SNP 66388 66388 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold172 SAMTools SNP 70090 70090 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold172 SAMTools SNP 70852 70852 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold172 SAMTools SNP 72767 72767 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.48%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold172 SAMTools SNP 74115 74115 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 77774 77774 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold172 SAMTools SNP 78577 78577 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.57%2C1.9e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C225:43 scaffold172 SAMTools SNP 89874 89874 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold172 SAMTools SNP 89894 89894 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold172 SAMTools SNP 90232 90232 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C254:99 scaffold172 SAMTools SNP 90331 90331 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C21:24 scaffold172 SAMTools SNP 90393 90393 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold172 SAMTools SNP 90888 90888 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.63%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold172 SAMTools SNP 91068 91068 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 92076 92076 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold172 SAMTools SNP 92707 92707 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.032%2C2.9e-09%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold172 SAMTools SNP 92720 92720 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.66%2C0.034%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold172 SAMTools SNP 93137 93137 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00053%2C4.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 93158 93158 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold172 SAMTools SNP 93653 93653 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C20%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.11%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold172 SAMTools SNP 94553 94553 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C3%3BMQ%3D48%3BFQ%3D155%3BPV4%3D1%2C0.037%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C182:99 scaffold172 SAMTools SNP 95360 95360 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.11%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C230:99 scaffold172 SAMTools SNP 96362 96362 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold172 SAMTools SNP 96907 96907 54.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold172 SAMTools SNP 97670 97670 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C9%2C12%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1.2e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold172 SAMTools SNP 98265 98265 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C102%2C0:99 scaffold172 SAMTools SNP 98286 98286 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C66%2C0:99 scaffold172 SAMTools SNP 98497 98497 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C8%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1.2e-05%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold172 SAMTools SNP 99421 99421 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C32%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1.2e-05%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold172 SAMTools SNP 102083 102083 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold172 SAMTools SNP 102125 102125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold172 SAMTools SNP 103389 103389 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold172 SAMTools SNP 103399 103399 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00049%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold172 SAMTools SNP 103484 103484 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold172 SAMTools SNP 103919 103919 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold172 SAMTools SNP 103934 103934 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold172 SAMTools SNP 105991 105991 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold172 SAMTools SNP 106039 106039 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.49%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold172 SAMTools SNP 106371 106371 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold172 SAMTools SNP 107327 107327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C9%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold172 SAMTools SNP 107332 107332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 108093 108093 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C0%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.095%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold172 SAMTools SNP 108485 108485 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.11%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold172 SAMTools SNP 108495 108495 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.13%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold172 SAMTools SNP 108516 108516 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.077%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 110802 110802 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold172 SAMTools SNP 110835 110835 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C6.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold172 SAMTools SNP 111726 111726 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 111759 111759 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 126960 126960 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold172 SAMTools SNP 126963 126963 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold172 SAMTools SNP 128457 128457 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C1%2C50%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.9e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold172 SAMTools SNP 129346 129346 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold172 SAMTools SNP 131140 131140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.23%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 131835 131835 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold172 SAMTools SNP 132797 132797 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold172 SAMTools SNP 132851 132851 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold172 SAMTools SNP 133526 133526 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 133535 133535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold172 SAMTools SNP 133981 133981 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 134036 134036 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.029%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold172 SAMTools SNP 135003 135003 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 135033 135033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 135039 135039 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C1%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold172 SAMTools SNP 135075 135075 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C1%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold172 SAMTools SNP 135599 135599 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C0.34%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold172 SAMTools SNP 136870 136870 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold172 SAMTools SNP 137168 137168 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold172 SAMTools SNP 137434 137434 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 137443 137443 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold172 SAMTools SNP 137702 137702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold172 SAMTools SNP 137741 137741 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C6%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.066%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold172 SAMTools SNP 138226 138226 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.34%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold172 SAMTools SNP 138704 138704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold172 SAMTools SNP 141803 141803 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold172 SAMTools SNP 158303 158303 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold172 SAMTools SNP 158324 158324 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.21%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 158784 158784 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.43%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold172 SAMTools SNP 158828 158828 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold172 SAMTools SNP 159186 159186 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C27%2C0:51 scaffold172 SAMTools SNP 159238 159238 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold172 SAMTools SNP 159647 159647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold172 SAMTools SNP 159677 159677 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold172 SAMTools SNP 160336 160336 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.58%2C0.13%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold172 SAMTools SNP 160626 160626 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C210:99 scaffold172 SAMTools SNP 161826 161826 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold172 SAMTools SNP 161878 161878 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 164076 164076 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.23%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C170:57 scaffold172 SAMTools SNP 164086 164086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold172 SAMTools SNP 165234 165234 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 165476 165476 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold172 SAMTools SNP 165542 165542 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold172 SAMTools SNP 165704 165704 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 165716 165716 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold172 SAMTools SNP 183028 183028 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C81%2C0:99 scaffold172 SAMTools SNP 183146 183146 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold172 SAMTools SNP 183205 183205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 183232 183232 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C30%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 188699 188699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold172 SAMTools SNP 190228 190228 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.29%2C0.0085%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold172 SAMTools SNP 190411 190411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C40%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.096%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 190566 190566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 190620 190620 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold172 SAMTools SNP 190637 190637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold172 SAMTools SNP 190871 190871 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold172 SAMTools SNP 191570 191570 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold172 SAMTools SNP 191621 191621 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.21%2C0.43%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold172 SAMTools SNP 191624 191624 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C0.23%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold172 SAMTools SNP 192255 192255 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C0.43%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold172 SAMTools SNP 192817 192817 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold172 SAMTools SNP 192818 192818 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.52%2C3.7e-05%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold172 SAMTools SNP 200420 200420 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.29%2C0.063%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold172 SAMTools SNP 200756 200756 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold172 SAMTools SNP 201724 201724 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold172 SAMTools SNP 201744 201744 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold172 SAMTools SNP 202046 202046 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold172 SAMTools SNP 202233 202233 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold172 SAMTools SNP 202920 202920 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 202932 202932 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 203776 203776 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold172 SAMTools SNP 208820 208820 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.6e-07%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C74:36 scaffold172 SAMTools SNP 211134 211134 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C115%2C18%2C48%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 211824 211824 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold172 SAMTools SNP 211830 211830 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold172 SAMTools SNP 211951 211951 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold172 SAMTools SNP 211979 211979 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold172 SAMTools SNP 214478 214478 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold172 SAMTools SNP 215679 215679 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C10%2C43%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold172 SAMTools SNP 215812 215812 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C24%2C132%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-07%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 215813 215813 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C58%2C198%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-07%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 217472 217472 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C23%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C0.0083%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 217682 217682 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C24%2C62%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.34%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 217950 217950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-136%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C109%2C0:99 scaffold172 SAMTools SNP 217998 217998 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C45%2C18%2C45%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.027%2C9.4e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold172 SAMTools SNP 218338 218338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold172 SAMTools SNP 218345 218345 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0075%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold172 SAMTools SNP 219646 219646 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C156%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-09%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 219650 219650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C9%2C26%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 219869 219869 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold172 SAMTools SNP 219871 219871 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.098%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold172 SAMTools SNP 221269 221269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C71%2C66%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 240400 240400 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C24%2C0:38 scaffold172 SAMTools SNP 241630 241630 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold172 SAMTools SNP 242246 242246 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C27%2C0:51 scaffold172 SAMTools SNP 242461 242461 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold172 SAMTools SNP 242489 242489 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C0%3BMQ%3D29%3BFQ%3D19.1%3BPV4%3D0.0012%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C98:49 scaffold172 SAMTools SNP 242491 242491 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C15%3BMQ%3D29%3BFQ%3D22%3BPV4%3D0.0012%2C0.019%2C0.095%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C49:52 scaffold172 SAMTools SNP 242492 242492 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C14%3BMQ%3D29%3BFQ%3D48%3BPV4%3D0.0049%2C0.38%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C95:78 scaffold172 SAMTools SNP 245777 245777 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold172 SAMTools SNP 246134 246134 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 246135 246135 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 246168 246168 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold172 SAMTools SNP 269848 269848 24.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold172 SAMTools SNP 274571 274571 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold172 SAMTools SNP 274617 274617 83.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold172 SAMTools SNP 274936 274936 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C4%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.019%2C3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C237:64 scaffold172 SAMTools SNP 274995 274995 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C54%2C0:99 scaffold172 SAMTools SNP 275150 275150 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D45%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold172 SAMTools SNP 275331 275331 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C3%2C0%3BMQ%3D45%3BFQ%3D35%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold172 SAMTools SNP 275456 275456 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C12%3BMQ%3D48%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold172 SAMTools SNP 275647 275647 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold172 SAMTools SNP 280570 280570 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold172 SAMTools SNP 285778 285778 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C21%2C3%3BMQ%3D48%3BFQ%3D134%3BPV4%3D3.7e-05%2C3.5e-05%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C221:99 scaffold172 SAMTools SNP 285796 285796 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C1%2C9%3BMQ%3D45%3BFQ%3D74%3BPV4%3D0.013%2C0.13%2C0.029%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold172 SAMTools SNP 285823 285823 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C17%2C20%3BMQ%3D46%3BFQ%3D225%3BPV4%3D6.4e-05%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 286379 286379 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 313930 313930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C0%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold172 SAMTools SNP 323936 323936 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold172 SAMTools SNP 324139 324139 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold172 SAMTools SNP 324283 324283 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C1%2C16%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.22%2C5.5e-27%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold172 SAMTools SNP 324568 324568 113 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C39%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C199%2C0%2C148%2C183%2C145:99 scaffold172 SAMTools SNP 325144 325144 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold172 SAMTools SNP 325732 325732 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D208%2C52%2C44%2C17%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.22%2C1.7e-11%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold172 SAMTools SNP 325758 325758 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C40%2C120%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 326453 326453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold172 SAMTools SNP 326492 326492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold172 SAMTools SNP 326544 326544 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.3e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C145:28 scaffold172 SAMTools SNP 328008 328008 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C60%2C3%2C15%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold172 SAMTools SNP 328022 328022 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C33%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.091%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold172 SAMTools SNP 328174 328174 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C190:99 scaffold172 SAMTools SNP 328654 328654 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C144:99 scaffold172 SAMTools SNP 328792 328792 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C9%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0003%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold172 SAMTools SNP 328840 328840 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold172 SAMTools SNP 329029 329029 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C20%2C44%2C14%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.31%2C7.3e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold172 SAMTools SNP 329080 329080 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C52%3BMQ%3D50%3BFQ%3D-88;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C194:86 scaffold172 SAMTools SNP 329091 329091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C58%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 331327 331327 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C42%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C2.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 331363 331363 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 331382 331382 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.062%2C1%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C241:99 scaffold172 SAMTools SNP 331397 331397 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0210%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold172 SAMTools SNP 331401 331401 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.6%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold172 SAMTools SNP 332243 332243 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C22%2C56%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.38%2C4.9e-113%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold172 SAMTools SNP 332265 332265 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C38%2C5%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.038%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold172 SAMTools SNP 332279 332279 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C30%2C5%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.3%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold172 SAMTools SNP 332303 332303 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C21%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 332305 332305 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C21%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0038%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 332998 332998 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold172 SAMTools SNP 333058 333058 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold172 SAMTools SNP 333215 333215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold172 SAMTools SNP 333252 333252 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C6.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold172 SAMTools SNP 355420 355420 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 355428 355428 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold172 SAMTools SNP 355831 355831 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold172 SAMTools SNP 355862 355862 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold172 SAMTools SNP 356159 356159 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold172 SAMTools SNP 356201 356201 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold172 SAMTools SNP 356880 356880 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold172 SAMTools SNP 356985 356985 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold172 SAMTools SNP 357490 357490 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold172 SAMTools SNP 357499 357499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold172 SAMTools SNP 358409 358409 44.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C15:18 scaffold1720 SAMTools SNP 1789 1789 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 1835 1835 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1720 SAMTools SNP 1945 1945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1720 SAMTools SNP 2259 2259 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.16%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C230:83 scaffold1720 SAMTools SNP 2301 2301 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C23%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C108:99 scaffold1720 SAMTools SNP 2418 2418 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1720 SAMTools SNP 3178 3178 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1720 SAMTools SNP 3600 3600 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C1%3BMQ%3D49%3BFQ%3D146%3BPV4%3D1%2C0.23%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C250:99 scaffold1720 SAMTools SNP 4939 4939 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C38%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 5038 5038 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C74%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1720 SAMTools SNP 5167 5167 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1720 SAMTools SNP 6650 6650 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C39%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1720 SAMTools SNP 18271 18271 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1720 SAMTools SNP 18307 18307 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1720 SAMTools SNP 18964 18964 85.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1720 SAMTools SNP 19117 19117 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0373%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C219:31 scaffold1720 SAMTools SNP 19198 19198 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1720 SAMTools SNP 19554 19554 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1720 SAMTools SNP 25464 25464 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1720 SAMTools SNP 25473 25473 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold1720 SAMTools SNP 30751 30751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 32275 32275 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1720 SAMTools SNP 37384 37384 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C84%2C0:99 scaffold1720 SAMTools SNP 37449 37449 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C68%2C12%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.81%2C7.2e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1720 SAMTools SNP 39193 39193 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1720 SAMTools SNP 40146 40146 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold1720 SAMTools SNP 43846 43846 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D985%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D456%2C32%2C413%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 44037 44037 75.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D557%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold1720 SAMTools SNP 44121 44121 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C99%3BMQ%3D37%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1720 SAMTools SNP 44137 44137 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C56%2C48%2C47%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 45635 45635 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C52%2C61%2C74%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 45640 45640 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C78%2C31%2C52%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.21%2C1.9e-06%2C0.00046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 45789 45789 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D48%3BFQ%3D17.1%3BPV4%3D1%2C1.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C143:47 scaffold1720 SAMTools SNP 45989 45989 7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C24%2C0:27 scaffold1720 SAMTools SNP 46121 46121 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D28.2%3BPV4%3D0.013%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C56:58 scaffold1720 SAMTools SNP 46286 46286 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C111%2C0:99 scaffold1720 SAMTools SNP 46355 46355 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C34%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C223%2C0:99 scaffold1720 SAMTools SNP 46388 46388 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C30%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1720 SAMTools SNP 47065 47065 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D657%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C24%2C0:45 scaffold1720 SAMTools SNP 47213 47213 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C81%2C64%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.45%2C7.9e-20%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C255%2C0:99 scaffold1720 SAMTools SNP 47308 47308 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C327%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C255%2C0:99 scaffold1720 SAMTools SNP 47402 47402 126 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C51%2C0%2C150%2C30%2C147:99 scaffold1720 SAMTools SNP 47869 47869 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D0.2%2C0%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C26:29 scaffold1720 SAMTools SNP 54332 54332 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C37%2C46%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.74%2C1.9e-113%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1720 SAMTools SNP 54607 54607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1720 SAMTools SNP 54708 54708 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.63%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1720 SAMTools SNP 56459 56459 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C153:28 scaffold1720 SAMTools SNP 56892 56892 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1720 SAMTools SNP 57679 57679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C47%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.0088%2C0.018%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 57736 57736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C59%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.064%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 59215 59215 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1720 SAMTools SNP 61081 61081 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1720 SAMTools SNP 63541 63541 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.17%2C1.9e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1720 SAMTools SNP 63564 63564 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C14%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.68%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C243:99 scaffold1720 SAMTools SNP 63627 63627 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C132%2C0:99 scaffold1720 SAMTools SNP 63723 63723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C21%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1720 SAMTools SNP 63852 63852 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C27%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1720 SAMTools SNP 63864 63864 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C15%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 64204 64204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1720 SAMTools SNP 64218 64218 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0041%2C8.7e-05%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1720 SAMTools SNP 64225 64225 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1720 SAMTools SNP 64282 64282 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C0%2C21%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.54%2C0.26%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1720 SAMTools SNP 64938 64938 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold1720 SAMTools SNP 65015 65015 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.74%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C49:28 scaffold1720 SAMTools SNP 65033 65033 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1720 SAMTools SNP 65040 65040 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1720 SAMTools SNP 65232 65232 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1720 SAMTools SNP 65240 65240 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.13%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1720 SAMTools SNP 65505 65505 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1720 SAMTools SNP 65511 65511 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1720 SAMTools SNP 65642 65642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1720 SAMTools SNP 65650 65650 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1720 SAMTools SNP 65989 65989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1720 SAMTools SNP 66010 66010 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1720 SAMTools SNP 66058 66058 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C72%2C3%2C12%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.39%2C0.37%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1720 SAMTools SNP 66118 66118 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C13%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 66270 66270 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C242:99 scaffold1720 SAMTools SNP 66276 66276 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C17%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold1720 SAMTools SNP 66935 66935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1720 SAMTools SNP 67495 67495 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1720 SAMTools SNP 67524 67524 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C178:99 scaffold1720 SAMTools SNP 68511 68511 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C142%2C11%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 68533 68533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C87%2C0%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 68590 68590 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C227:74 scaffold1720 SAMTools SNP 70374 70374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C20%2C53%3BMQ%3D50%3BFQ%3D108%3BPV4%3D5.9e-06%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1720 SAMTools SNP 80661 80661 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 81886 81886 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.38%2C3.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1720 SAMTools SNP 82064 82064 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C235:99 scaffold1720 SAMTools SNP 89766 89766 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 89772 89772 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 103712 103712 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1720 SAMTools SNP 103749 103749 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 104341 104341 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1720 SAMTools SNP 105121 105121 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C217%2C176%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1720 SAMTools SNP 105630 105630 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C54%2C71%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 106179 106179 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1720 SAMTools SNP 106964 106964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D674%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C356%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1720 SAMTools SNP 109681 109681 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1720 SAMTools SNP 111064 111064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C45%2C80%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 111105 111105 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C85%2C120%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.92%2C1.9e-129%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 111687 111687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C51%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1720 SAMTools SNP 112184 112184 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C78%2C48%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 114806 114806 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1.2e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1720 SAMTools SNP 114950 114950 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1e-06%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C134:36 scaffold1720 SAMTools SNP 115055 115055 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C85:57 scaffold1720 SAMTools SNP 115705 115705 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00013%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1720 SAMTools SNP 116536 116536 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1720 SAMTools SNP 116807 116807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 116837 116837 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1720 SAMTools SNP 117645 117645 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1720 SAMTools SNP 117649 117649 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold1720 SAMTools SNP 117696 117696 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1720 SAMTools SNP 118194 118194 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1720 SAMTools SNP 118204 118204 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1720 SAMTools SNP 118564 118564 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C214:99 scaffold1720 SAMTools SNP 123065 123065 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1720 SAMTools SNP 123114 123114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1720 SAMTools SNP 123376 123376 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1720 SAMTools SNP 124200 124200 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold1720 SAMTools SNP 124231 124231 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1720 SAMTools SNP 162050 162050 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 204783 204783 68.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold1720 SAMTools SNP 210755 210755 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.043%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1720 SAMTools SNP 210787 210787 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C0.035%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1720 SAMTools SNP 214332 214332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1720 SAMTools SNP 243626 243626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1720 SAMTools SNP 243645 243645 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C25%2C6%2C14%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.004%2C3.7e-05%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1720 SAMTools SNP 243668 243668 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C92%2C16%2C36%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.19%2C1%2C0.077%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 244128 244128 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C9%2C50%3BMQ%3D43%3BFQ%3D208%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1720 SAMTools SNP 244429 244429 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C33%2C10%3BMQ%3D44%3BFQ%3D202%3BPV4%3D0.78%2C1%2C0.29%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C229:99 scaffold1720 SAMTools SNP 244766 244766 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C8%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.48%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 244772 244772 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C5%2C11%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.75%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 245119 245119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C0.19%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1720 SAMTools SNP 245304 245304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C22%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.006%2C1%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 245383 245383 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C12%3BMQ%3D48%3BFQ%3D154%3BPV4%3D0.044%2C1%2C1%2C5.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1720 SAMTools SNP 245677 245677 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1720 SAMTools SNP 245797 245797 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D19%3BFQ%3D-34%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C7%2C0:11 scaffold1720 SAMTools SNP 246071 246071 18.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D21%3BFQ%3D-37%3BPV4%3D1%2C0.25%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C10%2C0:17 scaffold1720 SAMTools SNP 246135 246135 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1720 SAMTools SNP 246147 246147 205 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C35%2C5%2C218%2C0%2C215:57 scaffold1720 SAMTools SNP 250178 250178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1720 SAMTools SNP 250244 250244 94 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C42%2C0%2C128%2C31%2C125:81 scaffold1720 SAMTools SNP 250436 250436 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1720 SAMTools SNP 250551 250551 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 256099 256099 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1720 SAMTools SNP 256793 256793 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1720 SAMTools SNP 256835 256835 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1720 SAMTools SNP 257961 257961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 258577 258577 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1720 SAMTools SNP 259305 259305 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1720 SAMTools SNP 261711 261711 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 269382 269382 16.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1720 SAMTools SNP 270264 270264 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C65%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1720 SAMTools SNP 270899 270899 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C46%2C14%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 270995 270995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1720 SAMTools SNP 271576 271576 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C72%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C0.3%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 271705 271705 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C1%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 277471 277471 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D11%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C72%2C0:99 scaffold1720 SAMTools SNP 277843 277843 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D26%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C66%2C0:99 scaffold1720 SAMTools SNP 278687 278687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1720 SAMTools SNP 279135 279135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1720 SAMTools SNP 279189 279189 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1720 SAMTools SNP 279253 279253 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1720 SAMTools SNP 281188 281188 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C1%2C6%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1720 SAMTools SNP 281241 281241 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1720 SAMTools SNP 281466 281466 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.31%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1720 SAMTools SNP 282725 282725 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 282728 282728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1720 SAMTools SNP 282761 282761 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1720 SAMTools SNP 283106 283106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1720 SAMTools SNP 284559 284559 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1720 SAMTools SNP 285069 285069 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1720 SAMTools SNP 285553 285553 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1720 SAMTools SNP 286040 286040 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1720 SAMTools SNP 287937 287937 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1720 SAMTools SNP 291422 291422 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C102%2C0:99 scaffold1720 SAMTools SNP 291720 291720 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold1720 SAMTools SNP 291751 291751 29.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1720 SAMTools SNP 291896 291896 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C12%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1721 SAMTools SNP 17797 17797 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D221%2C8%2C50%2C10%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.00082%2C1%2C1%2C8.1e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1721 SAMTools SNP 33637 33637 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1721 SAMTools SNP 36451 36451 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1721 SAMTools SNP 36583 36583 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1721 SAMTools SNP 36605 36605 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C229:99 scaffold1721 SAMTools SNP 47854 47854 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1721 SAMTools SNP 49351 49351 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1721 SAMTools SNP 50793 50793 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1721 SAMTools SNP 53833 53833 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.097%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C144:82 scaffold1721 SAMTools SNP 53903 53903 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1721 SAMTools SNP 56202 56202 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1721 SAMTools SNP 56280 56280 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.002%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1721 SAMTools SNP 56295 56295 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C8%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.74%2C3.8e-14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1721 SAMTools SNP 60047 60047 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.55%2C0.26%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1721 SAMTools SNP 61339 61339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1721 SAMTools SNP 64557 64557 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1721 SAMTools SNP 66727 66727 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1721 SAMTools SNP 77120 77120 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1722 SAMTools SNP 4877 4877 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 12876 12876 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1722 SAMTools SNP 12933 12933 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1722 SAMTools SNP 12938 12938 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 17809 17809 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 17982 17982 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1722 SAMTools SNP 18119 18119 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1722 SAMTools SNP 33636 33636 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 33664 33664 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 42250 42250 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1722 SAMTools SNP 42862 42862 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1722 SAMTools SNP 42900 42900 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1722 SAMTools SNP 43522 43522 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 43941 43941 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 44841 44841 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 45744 45744 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1722 SAMTools SNP 45756 45756 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold1722 SAMTools SNP 46497 46497 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.39%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C74:77 scaffold1722 SAMTools SNP 46509 46509 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold1722 SAMTools SNP 46800 46800 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 46803 46803 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 46824 46824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 47486 47486 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1722 SAMTools SNP 48023 48023 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1722 SAMTools SNP 48045 48045 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C97:40 scaffold1722 SAMTools SNP 48070 48070 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C57%2C0:99 scaffold1722 SAMTools SNP 48080 48080 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1722 SAMTools SNP 48690 48690 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 49934 49934 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.046%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1722 SAMTools SNP 50250 50250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 56699 56699 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1722 SAMTools SNP 63571 63571 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1722 SAMTools SNP 63583 63583 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C241:99 scaffold1722 SAMTools SNP 68136 68136 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1722 SAMTools SNP 68216 68216 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.16%2C5.2e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1722 SAMTools SNP 68245 68245 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1722 SAMTools SNP 68284 68284 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.3%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1722 SAMTools SNP 70079 70079 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1722 SAMTools SNP 70396 70396 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1722 SAMTools SNP 70433 70433 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1722 SAMTools SNP 70447 70447 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1722 SAMTools SNP 71618 71618 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C151:33 scaffold1722 SAMTools SNP 71899 71899 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold1722 SAMTools SNP 75318 75318 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1722 SAMTools SNP 79287 79287 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C48%2C0:93 scaffold1722 SAMTools SNP 79881 79881 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C36%2C0:69 scaffold1722 SAMTools SNP 80077 80077 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.3e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C124:30 scaffold1722 SAMTools SNP 80170 80170 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1722 SAMTools SNP 80184 80184 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C111:80 scaffold1722 SAMTools SNP 83441 83441 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1722 SAMTools SNP 87894 87894 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1722 SAMTools SNP 91991 91991 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C2.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1722 SAMTools SNP 93060 93060 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1722 SAMTools SNP 93227 93227 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1722 SAMTools SNP 93790 93790 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold1722 SAMTools SNP 94745 94745 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1722 SAMTools SNP 94953 94953 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 95417 95417 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C2e-12%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C158:33 scaffold1722 SAMTools SNP 95490 95490 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 95505 95505 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 95508 95508 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 95988 95988 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1722 SAMTools SNP 95997 95997 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1722 SAMTools SNP 96679 96679 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 97158 97158 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 97581 97581 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 98765 98765 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C6%2C0:10 scaffold1722 SAMTools SNP 98776 98776 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.16%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1722 SAMTools SNP 99146 99146 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1722 SAMTools SNP 99768 99768 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D35%3BFQ%3D31%3BPV4%3D0.045%2C8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C115:61 scaffold1722 SAMTools SNP 99785 99785 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D35%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C36%2C0:69 scaffold1722 SAMTools SNP 100901 100901 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D48%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.00032%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C237:44 scaffold1722 SAMTools SNP 100909 100909 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1722 SAMTools SNP 101108 101108 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 101111 101111 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1722 SAMTools SNP 101138 101138 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1722 SAMTools SNP 101372 101372 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 101378 101378 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1722 SAMTools SNP 101387 101387 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1722 SAMTools SNP 101465 101465 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 101710 101710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1722 SAMTools SNP 102046 102046 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1722 SAMTools SNP 102135 102135 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1722 SAMTools SNP 102343 102343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1722 SAMTools SNP 102347 102347 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 102423 102423 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 102441 102441 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 102961 102961 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 102980 102980 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 103048 103048 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C85:43 scaffold1722 SAMTools SNP 103079 103079 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 103085 103085 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1722 SAMTools SNP 103313 103313 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold1722 SAMTools SNP 103376 103376 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 104655 104655 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1722 SAMTools SNP 105108 105108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1722 SAMTools SNP 105181 105181 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1722 SAMTools SNP 105543 105543 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C42%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 106188 106188 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold1722 SAMTools SNP 109042 109042 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1722 SAMTools SNP 114865 114865 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1722 SAMTools SNP 115891 115891 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.028%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1722 SAMTools SNP 116142 116142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 117595 117595 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1722 SAMTools SNP 117669 117669 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C2%2C43%2C4%3BMQ%3D49%3BFQ%3D102%3BPV4%3D0.41%2C1.7e-65%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1722 SAMTools SNP 117951 117951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C1%2C44%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 118000 118000 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 124793 124793 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 124806 124806 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 125306 125306 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 125337 125337 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 125345 125345 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1722 SAMTools SNP 125346 125346 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold1722 SAMTools SNP 125533 125533 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C49%2C2%3BMQ%3D50%3BFQ%3D-136%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C109%2C0:99 scaffold1722 SAMTools SNP 125641 125641 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C17%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1722 SAMTools SNP 126396 126396 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold1722 SAMTools SNP 126720 126720 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1722 SAMTools SNP 126721 126721 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1722 SAMTools SNP 126837 126837 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 126855 126855 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1722 SAMTools SNP 127069 127069 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1722 SAMTools SNP 131644 131644 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1722 SAMTools SNP 131986 131986 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold1722 SAMTools SNP 131992 131992 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold1722 SAMTools SNP 132157 132157 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1722 SAMTools SNP 132169 132169 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1722 SAMTools SNP 132274 132274 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C48%2C0:93 scaffold1722 SAMTools SNP 132548 132548 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1722 SAMTools SNP 132597 132597 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1722 SAMTools SNP 132952 132952 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1722 SAMTools SNP 132979 132979 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1722 SAMTools SNP 133078 133078 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold1722 SAMTools SNP 133082 133082 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C6.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold1722 SAMTools SNP 133635 133635 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C185:99 scaffold1722 SAMTools SNP 133700 133700 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1722 SAMTools SNP 133728 133728 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1722 SAMTools SNP 133755 133755 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D61.9%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C107:92 scaffold1722 SAMTools SNP 134401 134401 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1722 SAMTools SNP 134750 134750 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1722 SAMTools SNP 134756 134756 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.55%2C0.11%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1722 SAMTools SNP 136635 136635 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1722 SAMTools SNP 138059 138059 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1722 SAMTools SNP 138539 138539 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1722 SAMTools SNP 138659 138659 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 139868 139868 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 140989 140989 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1722 SAMTools SNP 158007 158007 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1722 SAMTools SNP 158033 158033 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 172926 172926 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C238:99 scaffold1722 SAMTools SNP 173106 173106 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1722 SAMTools SNP 174158 174158 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.32%2C0.0017%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1722 SAMTools SNP 174187 174187 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1722 SAMTools SNP 174547 174547 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1722 SAMTools SNP 174552 174552 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1722 SAMTools SNP 174716 174716 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1722 SAMTools SNP 174905 174905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1722 SAMTools SNP 174929 174929 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C7%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.21%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1722 SAMTools SNP 175013 175013 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.031%2C0.21%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1722 SAMTools SNP 175030 175030 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C7%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1722 SAMTools SNP 176397 176397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C8%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 176421 176421 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C3%2C5%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1722 SAMTools SNP 176895 176895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 176928 176928 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 178506 178506 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C123%2C0:99 scaffold1722 SAMTools SNP 178633 178633 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1722 SAMTools SNP 178634 178634 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1722 SAMTools SNP 185698 185698 6.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1722 SAMTools SNP 185883 185883 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C51%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C178%2C0:99 scaffold1722 SAMTools SNP 185955 185955 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D64.3%3BPV4%3D0.18%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C96:94 scaffold1722 SAMTools SNP 185974 185974 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C39%2C0:75 scaffold1722 SAMTools SNP 186143 186143 12 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1722 SAMTools SNP 186287 186287 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C51%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C160%2C0:99 scaffold1722 SAMTools SNP 186381 186381 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1722 SAMTools SNP 187001 187001 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1722 SAMTools SNP 188324 188324 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1722 SAMTools SNP 188715 188715 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 189078 189078 86.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold1722 SAMTools SNP 189191 189191 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C21%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C250:99 scaffold1722 SAMTools SNP 189223 189223 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 189230 189230 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 190840 190840 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.081%2C1.4e-18%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1722 SAMTools SNP 191378 191378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1722 SAMTools SNP 191754 191754 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1722 SAMTools SNP 191967 191967 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 193195 193195 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.41%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1722 SAMTools SNP 194888 194888 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1722 SAMTools SNP 195754 195754 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold1722 SAMTools SNP 195853 195853 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1722 SAMTools SNP 195856 195856 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1722 SAMTools SNP 196277 196277 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1722 SAMTools SNP 196965 196965 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 198811 198811 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C4%2C72%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.13%2C1.2e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1722 SAMTools SNP 198847 198847 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C15%2C90%2C15%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.56%2C4.5e-104%2C0.18%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1722 SAMTools SNP 198910 198910 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C255%2C0:99 scaffold1722 SAMTools SNP 198988 198988 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C74%2C10%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1.6e-12%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 200430 200430 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1722 SAMTools SNP 204523 204523 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1722 SAMTools SNP 204627 204627 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C33%2C0:63 scaffold1722 SAMTools SNP 204654 204654 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1722 SAMTools SNP 207362 207362 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00038%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C228:47 scaffold1722 SAMTools SNP 207486 207486 65.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold1722 SAMTools SNP 241527 241527 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold1722 SAMTools SNP 241617 241617 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold1722 SAMTools SNP 242937 242937 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 244053 244053 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1722 SAMTools SNP 245396 245396 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 252696 252696 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C54%2C0:99 scaffold1722 SAMTools SNP 253045 253045 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1722 SAMTools SNP 259297 259297 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 308931 308931 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1722 SAMTools SNP 326136 326136 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C6%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.055%2C6.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1722 SAMTools SNP 326187 326187 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1722 SAMTools SNP 326534 326534 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.14%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C188:99 scaffold1722 SAMTools SNP 326582 326582 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C179:99 scaffold1722 SAMTools SNP 327064 327064 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1722 SAMTools SNP 328645 328645 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1722 SAMTools SNP 357933 357933 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold1722 SAMTools SNP 358421 358421 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D34%3BFQ%3D-34%3BPV4%3D0.003%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C7%2C0:12 scaffold1722 SAMTools SNP 403016 403016 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1722 SAMTools SNP 403018 403018 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1722 SAMTools SNP 403465 403465 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold1722 SAMTools SNP 403475 403475 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1723 SAMTools SNP 5995 5995 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1723 SAMTools SNP 16620 16620 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1723 SAMTools SNP 25046 25046 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1723 SAMTools SNP 25233 25233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1723 SAMTools SNP 25305 25305 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C33%2C0:63 scaffold1723 SAMTools SNP 25381 25381 87.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C21%2C0:39 scaffold1723 SAMTools SNP 29755 29755 22.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1723 SAMTools SNP 32010 32010 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1723 SAMTools SNP 32077 32077 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1723 SAMTools SNP 32527 32527 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold1723 SAMTools SNP 32554 32554 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1723 SAMTools SNP 32773 32773 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold1723 SAMTools SNP 32779 32779 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1723 SAMTools SNP 33519 33519 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 34813 34813 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1723 SAMTools SNP 36029 36029 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C234:99 scaffold1723 SAMTools SNP 36365 36365 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1723 SAMTools SNP 36477 36477 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1723 SAMTools SNP 36494 36494 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1723 SAMTools SNP 37848 37848 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1723 SAMTools SNP 38337 38337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1723 SAMTools SNP 46476 46476 3.55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1723 SAMTools SNP 50238 50238 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C17:20 scaffold1723 SAMTools SNP 50623 50623 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.002%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C80:53 scaffold1723 SAMTools SNP 50989 50989 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1723 SAMTools SNP 51033 51033 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1723 SAMTools SNP 51076 51076 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 53202 53202 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 53220 53220 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 85048 85048 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1723 SAMTools SNP 87710 87710 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1723 SAMTools SNP 98073 98073 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.24%2C0.12%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1723 SAMTools SNP 98550 98550 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C19%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.11%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1723 SAMTools SNP 101656 101656 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 101675 101675 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 117696 117696 6.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1723 SAMTools SNP 118305 118305 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold1723 SAMTools SNP 118705 118705 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.14%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 118732 118732 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C10%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1723 SAMTools SNP 118821 118821 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C20%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 118915 118915 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C33%2C0:63 scaffold1723 SAMTools SNP 119107 119107 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 119809 119809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C77%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1723 SAMTools SNP 119905 119905 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.68%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1723 SAMTools SNP 120808 120808 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C25%2C40%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 120833 120833 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C50%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 121268 121268 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 121722 121722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1723 SAMTools SNP 121767 121767 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1723 SAMTools SNP 121809 121809 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold1723 SAMTools SNP 121827 121827 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1723 SAMTools SNP 122033 122033 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1723 SAMTools SNP 122078 122078 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1723 SAMTools SNP 122089 122089 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00074%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1723 SAMTools SNP 123418 123418 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 123421 123421 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00086%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 123439 123439 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 123701 123701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C9%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1723 SAMTools SNP 123737 123737 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 123936 123936 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1723 SAMTools SNP 124157 124157 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1723 SAMTools SNP 124195 124195 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1723 SAMTools SNP 124408 124408 200 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C22%2C253%2C0%2C244:99 scaffold1723 SAMTools SNP 124884 124884 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C3%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1723 SAMTools SNP 124897 124897 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C3%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1723 SAMTools SNP 125327 125327 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1723 SAMTools SNP 125399 125399 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1723 SAMTools SNP 125423 125423 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1723 SAMTools SNP 125442 125442 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1723 SAMTools SNP 125716 125716 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 128729 128729 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 129442 129442 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C248:99 scaffold1723 SAMTools SNP 129448 129448 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1723 SAMTools SNP 129972 129972 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.018%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1723 SAMTools SNP 130392 130392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1723 SAMTools SNP 130407 130407 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.27%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C201:99 scaffold1723 SAMTools SNP 130417 130417 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C246:99 scaffold1723 SAMTools SNP 130434 130434 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C213:99 scaffold1723 SAMTools SNP 130970 130970 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C24%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.29%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1723 SAMTools SNP 131498 131498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 132482 132482 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C27%2C0:51 scaffold1723 SAMTools SNP 132536 132536 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1723 SAMTools SNP 132576 132576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1723 SAMTools SNP 132713 132713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1723 SAMTools SNP 132797 132797 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 133351 133351 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.25%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1723 SAMTools SNP 133772 133772 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1723 SAMTools SNP 136468 136468 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 136471 136471 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 136546 136546 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1723 SAMTools SNP 136564 136564 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold1723 SAMTools SNP 137094 137094 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1723 SAMTools SNP 137704 137704 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1723 SAMTools SNP 137773 137773 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1723 SAMTools SNP 138148 138148 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1723 SAMTools SNP 138396 138396 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1723 SAMTools SNP 138567 138567 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1723 SAMTools SNP 138588 138588 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1723 SAMTools SNP 144142 144142 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1723 SAMTools SNP 144187 144187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1723 SAMTools SNP 144675 144675 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1723 SAMTools SNP 147363 147363 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C202:60 scaffold1723 SAMTools SNP 147378 147378 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1723 SAMTools SNP 152964 152964 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1723 SAMTools SNP 154777 154777 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1723 SAMTools SNP 154826 154826 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 154958 154958 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1723 SAMTools SNP 154970 154970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1723 SAMTools SNP 154991 154991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 155650 155650 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 155811 155811 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.16%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1723 SAMTools SNP 155874 155874 49.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1723 SAMTools SNP 156052 156052 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1723 SAMTools SNP 157002 157002 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1723 SAMTools SNP 166980 166980 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1723 SAMTools SNP 171990 171990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1723 SAMTools SNP 172372 172372 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1723 SAMTools SNP 172423 172423 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1723 SAMTools SNP 172522 172522 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1723 SAMTools SNP 182485 182485 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1723 SAMTools SNP 182515 182515 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0064%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1723 SAMTools SNP 186617 186617 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C219:99 scaffold1723 SAMTools SNP 186641 186641 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C205:77 scaffold1723 SAMTools SNP 186665 186665 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C110:99 scaffold1723 SAMTools SNP 186704 186704 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.14%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1723 SAMTools SNP 186717 186717 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.32%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1723 SAMTools SNP 186988 186988 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1723 SAMTools SNP 187015 187015 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C5%2C105%2C26%3BMQ%3D50%3BFQ%3D-202%3BPV4%3D0.0023%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1723 SAMTools SNP 187571 187571 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C9%2C73%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 187711 187711 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C0%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold1723 SAMTools SNP 187714 187714 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C38%2C0%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1723 SAMTools SNP 187777 187777 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C85%2C0%2C110%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C8.2e-51%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1723 SAMTools SNP 188244 188244 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1723 SAMTools SNP 188252 188252 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C45%2C38%3BMQ%3D50%3BFQ%3D-247%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1723 SAMTools SNP 189886 189886 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D646%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C388%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1723 SAMTools SNP 190016 190016 85.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C0:39 scaffold1723 SAMTools SNP 191527 191527 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.24%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold1723 SAMTools SNP 191530 191530 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold1723 SAMTools SNP 193761 193761 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C0.089%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1723 SAMTools SNP 193773 193773 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1723 SAMTools SNP 193952 193952 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1723 SAMTools SNP 200086 200086 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1723 SAMTools SNP 202848 202848 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0092%2C1%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1723 SAMTools SNP 203424 203424 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C27%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.2e-05%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1723 SAMTools SNP 203458 203458 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C1%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00045%2C0.22%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 203466 203466 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C0%2C35%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.00014%2C0.49%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1723 SAMTools SNP 215650 215650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C104%2C33%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00085%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 217517 217517 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1723 SAMTools SNP 218670 218670 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1047%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D420%2C84%2C131%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C2.2e-64%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 218709 218709 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1602%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D805%2C201%2C315%2C251%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-24%2C1%2C1%2C2.9e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 221712 221712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1227%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C316%2C255%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1723 SAMTools SNP 224028 224028 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4479%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D476%2C2454%2C517%2C1019%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.4e-39%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 224300 224300 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1901%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D650%2C374%2C373%2C240%3BMQ%3D29%3BFQ%3D152%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C210:99 scaffold1723 SAMTools SNP 231350 231350 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C24%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1723 SAMTools SNP 231363 231363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1723 SAMTools SNP 234528 234528 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D23%3BPV4%3D7.4e-05%2C2.3e-10%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1723 SAMTools SNP 234763 234763 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.2%2C1.7e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1723 SAMTools SNP 238935 238935 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1723 SAMTools SNP 238959 238959 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1723 SAMTools SNP 239288 239288 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1723 SAMTools SNP 239477 239477 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1723 SAMTools SNP 239836 239836 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0034%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1723 SAMTools SNP 240868 240868 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1723 SAMTools SNP 244838 244838 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C21%2C0:39 scaffold1723 SAMTools SNP 245199 245199 7.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1723 SAMTools SNP 247125 247125 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.18%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C191:99 scaffold1723 SAMTools SNP 247138 247138 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1723 SAMTools SNP 251083 251083 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1723 SAMTools SNP 254875 254875 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1723 SAMTools SNP 255981 255981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1725 SAMTools SNP 12582 12582 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1725 SAMTools SNP 12645 12645 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1725 SAMTools SNP 12670 12670 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1725 SAMTools SNP 41780 41780 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1725 SAMTools SNP 50695 50695 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1725 SAMTools SNP 50935 50935 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1725 SAMTools SNP 60950 60950 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C19%2C0%3BMQ%3D49%3BFQ%3D27%3BPV4%3D1%2C8.1e-17%2C0.33%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C94:57 scaffold1726 SAMTools SNP 684 684 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1726 SAMTools SNP 3057 3057 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1726 SAMTools SNP 3403 3403 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00077%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1726 SAMTools SNP 5714 5714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C9.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 5741 5741 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1726 SAMTools SNP 7021 7021 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1726 SAMTools SNP 7106 7106 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C18%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C121:55 scaffold1726 SAMTools SNP 7603 7603 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1726 SAMTools SNP 8610 8610 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1726 SAMTools SNP 10409 10409 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 11708 11708 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 12124 12124 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 13044 13044 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 13931 13931 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 13953 13953 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1726 SAMTools SNP 14312 14312 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1726 SAMTools SNP 14871 14871 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C60:63 scaffold1726 SAMTools SNP 14891 14891 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1726 SAMTools SNP 15522 15522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1726 SAMTools SNP 16252 16252 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C97:99 scaffold1726 SAMTools SNP 16998 16998 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1726 SAMTools SNP 17013 17013 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 18653 18653 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C152:43 scaffold1726 SAMTools SNP 18685 18685 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1726 SAMTools SNP 25230 25230 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C8%2C8%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1726 SAMTools SNP 25264 25264 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C10%2C22%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.24%2C0.081%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1726 SAMTools SNP 26910 26910 23.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold1726 SAMTools SNP 37124 37124 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C30%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0033%2C2.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1726 SAMTools SNP 37398 37398 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C64%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1726 SAMTools SNP 42944 42944 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C22%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C246:99 scaffold1726 SAMTools SNP 51611 51611 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1726 SAMTools SNP 51735 51735 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1726 SAMTools SNP 51756 51756 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1726 SAMTools SNP 73157 73157 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 74002 74002 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 74239 74239 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 74794 74794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 90062 90062 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1726 SAMTools SNP 97843 97843 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C17:20 scaffold1726 SAMTools SNP 98159 98159 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 98162 98162 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 99726 99726 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1726 SAMTools SNP 99738 99738 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1726 SAMTools SNP 100407 100407 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1726 SAMTools SNP 100427 100427 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1726 SAMTools SNP 100898 100898 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C39%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.075%2C4.4e-60%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1726 SAMTools SNP 101451 101451 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1726 SAMTools SNP 104978 104978 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1726 SAMTools SNP 108388 108388 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 108587 108587 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00036%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C161:60 scaffold1726 SAMTools SNP 116872 116872 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1726 SAMTools SNP 117194 117194 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1726 SAMTools SNP 117196 117196 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C11%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1726 SAMTools SNP 117406 117406 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1726 SAMTools SNP 118270 118270 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1726 SAMTools SNP 118430 118430 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 118992 118992 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1726 SAMTools SNP 119009 119009 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1726 SAMTools SNP 119511 119511 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1726 SAMTools SNP 119517 119517 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1726 SAMTools SNP 119586 119586 88 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C40%2C31%2C117%2C0%2C114:16 scaffold1726 SAMTools SNP 120874 120874 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 120877 120877 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 123198 123198 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 123911 123911 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold1726 SAMTools SNP 124247 124247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1726 SAMTools SNP 125027 125027 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1726 SAMTools SNP 125863 125863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1726 SAMTools SNP 125978 125978 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.3e-24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1726 SAMTools SNP 126798 126798 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1726 SAMTools SNP 133573 133573 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1726 SAMTools SNP 133669 133669 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1726 SAMTools SNP 134074 134074 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1726 SAMTools SNP 134077 134077 98.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1726 SAMTools SNP 134824 134824 28.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1726 SAMTools SNP 136975 136975 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1726 SAMTools SNP 137322 137322 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1726 SAMTools SNP 137895 137895 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C66%2C0:99 scaffold1726 SAMTools SNP 137974 137974 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.43%2C1.4e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C232:60 scaffold1726 SAMTools SNP 142122 142122 95.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C18%2C0:33 scaffold1726 SAMTools SNP 142235 142235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold1726 SAMTools SNP 142262 142262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1726 SAMTools SNP 154903 154903 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 154985 154985 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1726 SAMTools SNP 155967 155967 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1726 SAMTools SNP 172002 172002 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold1726 SAMTools SNP 172058 172058 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 174014 174014 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1726 SAMTools SNP 174022 174022 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold1726 SAMTools SNP 177350 177350 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C239:69 scaffold1726 SAMTools SNP 178124 178124 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1726 SAMTools SNP 178163 178163 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1726 SAMTools SNP 179302 179302 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1726 SAMTools SNP 180493 180493 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1726 SAMTools SNP 180494 180494 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1726 SAMTools SNP 180579 180579 17.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1726 SAMTools SNP 281386 281386 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1726 SAMTools SNP 292373 292373 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.25%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1726 SAMTools SNP 297024 297024 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D47%3BFQ%3D3.93%3BPV4%3D1%2C6.3e-09%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C29:32 scaffold1726 SAMTools SNP 307905 307905 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.3e-16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C224:41 scaffold1726 SAMTools SNP 308004 308004 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.37%2C7.3e-21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C190:54 scaffold1726 SAMTools SNP 308038 308038 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C45%2C0:87 scaffold1726 SAMTools SNP 308994 308994 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C56%2C26%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 310140 310140 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1726 SAMTools SNP 311597 311597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1726 SAMTools SNP 313024 313024 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.5%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 313920 313920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.089%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 313923 313923 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.3%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1726 SAMTools SNP 314755 314755 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C112%2C8%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 314884 314884 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C85%2C23%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.04%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 314911 314911 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C39%2C33%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C4.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 315109 315109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C312%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 316280 316280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D210%2C17%2C131%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 316559 316559 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C1%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.22%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1726 SAMTools SNP 316643 316643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1726 SAMTools SNP 317120 317120 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.12%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 324900 324900 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1726 SAMTools SNP 324918 324918 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 324942 324942 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.27%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1726 SAMTools SNP 325267 325267 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1726 SAMTools SNP 326864 326864 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.17%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C243:68 scaffold1726 SAMTools SNP 330331 330331 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1726 SAMTools SNP 331173 331173 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1726 SAMTools SNP 331192 331192 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C0.00019%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1726 SAMTools SNP 332998 332998 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1726 SAMTools SNP 333037 333037 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold1726 SAMTools SNP 333221 333221 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1726 SAMTools SNP 333433 333433 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C231:34 scaffold1726 SAMTools SNP 335522 335522 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C40%2C2%2C20%3BMQ%3D50%3BFQ%3D153%3BPV4%3D8.8e-05%2C0.00074%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1726 SAMTools SNP 336999 336999 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C57%2C0%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.18%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 337895 337895 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C2%2C53%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.9e-34%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1726 SAMTools SNP 338738 338738 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C31%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.22%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 346875 346875 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C15%2C10%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.02%2C7.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1726 SAMTools SNP 347078 347078 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1726 SAMTools SNP 347481 347481 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1726 SAMTools SNP 347486 347486 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.088%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1726 SAMTools SNP 348346 348346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 349461 349461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C53%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1726 SAMTools SNP 349536 349536 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C9%2C21%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.19%2C1.9e-18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1726 SAMTools SNP 349979 349979 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 350601 350601 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 350664 350664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.017%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 350915 350915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1726 SAMTools SNP 350959 350959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 350991 350991 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1726 SAMTools SNP 351399 351399 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1726 SAMTools SNP 351580 351580 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold1726 SAMTools SNP 351673 351673 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1726 SAMTools SNP 351691 351691 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1726 SAMTools SNP 351865 351865 37.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1726 SAMTools SNP 352120 352120 40.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold1726 SAMTools SNP 352306 352306 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1726 SAMTools SNP 352454 352454 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1726 SAMTools SNP 352969 352969 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C20%2C14%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0028%2C8e-08%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1726 SAMTools SNP 353294 353294 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 354185 354185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C16%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1726 SAMTools SNP 354575 354575 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C7%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1726 SAMTools SNP 354581 354581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1726 SAMTools SNP 354650 354650 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1726 SAMTools SNP 354666 354666 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1726 SAMTools SNP 355265 355265 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1726 SAMTools SNP 355334 355334 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1726 SAMTools SNP 355531 355531 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1726 SAMTools SNP 355618 355618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1726 SAMTools SNP 355622 355622 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1726 SAMTools SNP 355880 355880 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1726 SAMTools SNP 356263 356263 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C105%2C0:99 scaffold1726 SAMTools SNP 356660 356660 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00013%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold1726 SAMTools SNP 356992 356992 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1726 SAMTools SNP 356995 356995 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.53%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1726 SAMTools SNP 357278 357278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C29%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.51%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1726 SAMTools SNP 357287 357287 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C23%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.29%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1726 SAMTools SNP 357299 357299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C55%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1726 SAMTools SNP 357556 357556 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C221:99 scaffold1726 SAMTools SNP 357574 357574 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1726 SAMTools SNP 357705 357705 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1726 SAMTools SNP 357748 357748 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.6%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold1726 SAMTools SNP 364505 364505 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D69%2C50%2C21%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D4.2e-05%2C5.9e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1726 SAMTools SNP 364646 364646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C164%2C22%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 364654 364654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C166%2C22%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 365117 365117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 365276 365276 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C555%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 365551 365551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D13%2C2%2C32%2C493%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1.5e-13%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 365566 365566 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C15%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1726 SAMTools SNP 368102 368102 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C71:74 scaffold1726 SAMTools SNP 368111 368111 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1726 SAMTools SNP 368318 368318 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1726 SAMTools SNP 369672 369672 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.52%2C8.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C184:70 scaffold1726 SAMTools SNP 370645 370645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D784%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C85%2C408%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 371277 371277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C113%2C27%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 371772 371772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C19%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1726 SAMTools SNP 371787 371787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 372091 372091 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C394%2C76%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1726 SAMTools SNP 374820 374820 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C36%2C0:67 scaffold1726 SAMTools SNP 375144 375144 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C34%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.24%2C3.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1726 SAMTools SNP 375816 375816 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.083%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1726 SAMTools SNP 376928 376928 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1726 SAMTools SNP 376959 376959 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00012%2C9e-10%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C245:71 scaffold1726 SAMTools SNP 378431 378431 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1726 SAMTools SNP 378730 378730 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C63%2C0:99 scaffold1726 SAMTools SNP 379752 379752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1726 SAMTools SNP 382573 382573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1726 SAMTools SNP 382636 382636 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1726 SAMTools SNP 382883 382883 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 383312 383312 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C51%2C0:99 scaffold1726 SAMTools SNP 383366 383366 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold1726 SAMTools SNP 383574 383574 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1726 SAMTools SNP 383584 383584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C30%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1726 SAMTools SNP 384365 384365 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1726 SAMTools SNP 384411 384411 41.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1726 SAMTools SNP 385247 385247 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C75%2C0:99 scaffold1726 SAMTools SNP 385628 385628 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C2.2e-11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C217:58 scaffold1726 SAMTools SNP 386127 386127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1726 SAMTools SNP 386133 386133 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1726 SAMTools SNP 386757 386757 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1726 SAMTools SNP 387114 387114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 387120 387120 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 387258 387258 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C57%2C0:99 scaffold1726 SAMTools SNP 387366 387366 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.36%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1726 SAMTools SNP 387384 387384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C10%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.033%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1726 SAMTools SNP 387779 387779 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1726 SAMTools SNP 388372 388372 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C223:99 scaffold1726 SAMTools SNP 389179 389179 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 390659 390659 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.42%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C174:52 scaffold1726 SAMTools SNP 391092 391092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1726 SAMTools SNP 391427 391427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C24%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1726 SAMTools SNP 391957 391957 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1726 SAMTools SNP 393028 393028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1726 SAMTools SNP 394510 394510 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1726 SAMTools SNP 394538 394538 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 394541 394541 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 396621 396621 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 396779 396779 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 411982 411982 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 412618 412618 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1726 SAMTools SNP 412636 412636 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1726 SAMTools SNP 415576 415576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1726 SAMTools SNP 415813 415813 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1726 SAMTools SNP 416583 416583 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1726 SAMTools SNP 416610 416610 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1726 SAMTools SNP 416634 416634 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 416664 416664 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1726 SAMTools SNP 416814 416814 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1726 SAMTools SNP 416820 416820 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1726 SAMTools SNP 418387 418387 31.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1726 SAMTools SNP 418405 418405 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1726 SAMTools SNP 418438 418438 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1726 SAMTools SNP 419953 419953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1726 SAMTools SNP 419977 419977 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.44%2C0.0084%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C215:99 scaffold1726 SAMTools SNP 419996 419996 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.21%2C0.19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1726 SAMTools SNP 420136 420136 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1726 SAMTools SNP 420403 420403 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C51%2C0:99 scaffold1726 SAMTools SNP 420511 420511 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1726 SAMTools SNP 420568 420568 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold1726 SAMTools SNP 422753 422753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1726 SAMTools SNP 423095 423095 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1726 SAMTools SNP 423353 423353 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1726 SAMTools SNP 423857 423857 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1726 SAMTools SNP 426839 426839 48.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold1728 SAMTools SNP 22497 22497 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.034%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C155:81 scaffold1728 SAMTools SNP 22640 22640 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1728 SAMTools SNP 25562 25562 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D0.35%2C8.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C95:80 scaffold1728 SAMTools SNP 25992 25992 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold1728 SAMTools SNP 26243 26243 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1728 SAMTools SNP 95058 95058 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1728 SAMTools SNP 98012 98012 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1729 SAMTools SNP 5060 5060 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1729 SAMTools SNP 5132 5132 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D47%3BFQ%3D27%3BPV4%3D1%2C0.064%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C137:57 scaffold1729 SAMTools SNP 5816 5816 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C42%2C0:81 scaffold1729 SAMTools SNP 5843 5843 49.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold1729 SAMTools SNP 5993 5993 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C62%2C6%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold1729 SAMTools SNP 5999 5999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C63%2C6%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C0.42%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold1729 SAMTools SNP 6254 6254 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C57%2C0:99 scaffold1729 SAMTools SNP 6509 6509 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D10%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C78%2C0:93 scaffold1729 SAMTools SNP 7219 7219 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1729 SAMTools SNP 7251 7251 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C11%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D6e-05%2C2.2e-10%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1729 SAMTools SNP 7557 7557 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1729 SAMTools SNP 7598 7598 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1729 SAMTools SNP 8081 8081 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1729 SAMTools SNP 8087 8087 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.47%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1729 SAMTools SNP 13576 13576 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1729 SAMTools SNP 37662 37662 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1729 SAMTools SNP 68391 68391 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1729 SAMTools SNP 104598 104598 67.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1729 SAMTools SNP 104824 104824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1729 SAMTools SNP 104948 104948 23.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold1729 SAMTools SNP 105624 105624 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold1729 SAMTools SNP 105648 105648 9.63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C18%2C0:24 scaffold1729 SAMTools SNP 105872 105872 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1729 SAMTools SNP 106206 106206 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1729 SAMTools SNP 107067 107067 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1729 SAMTools SNP 124205 124205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 126235 126235 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.57%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1729 SAMTools SNP 126236 126236 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1729 SAMTools SNP 126259 126259 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1729 SAMTools SNP 126265 126265 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1729 SAMTools SNP 126280 126280 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1729 SAMTools SNP 126304 126304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1729 SAMTools SNP 128287 128287 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C13%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1729 SAMTools SNP 128446 128446 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C65%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1729 SAMTools SNP 129312 129312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 129333 129333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C40%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1729 SAMTools SNP 129729 129729 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1729 SAMTools SNP 129765 129765 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1729 SAMTools SNP 129801 129801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1729 SAMTools SNP 129949 129949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1729 SAMTools SNP 129976 129976 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1729 SAMTools SNP 131369 131369 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C228:31 scaffold1729 SAMTools SNP 136243 136243 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1729 SAMTools SNP 137344 137344 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1729 SAMTools SNP 137384 137384 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1729 SAMTools SNP 137481 137481 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1729 SAMTools SNP 146999 146999 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1729 SAMTools SNP 147005 147005 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1729 SAMTools SNP 148437 148437 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 148534 148534 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1729 SAMTools SNP 151759 151759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C104%2C83%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 154342 154342 21.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C19%2C13%2C52%2C0%2C49:10 scaffold1729 SAMTools SNP 155772 155772 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1729 SAMTools SNP 159096 159096 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C244:99 scaffold1729 SAMTools SNP 159685 159685 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1729 SAMTools SNP 159709 159709 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold1729 SAMTools SNP 161057 161057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1729 SAMTools SNP 161110 161110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.49%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1729 SAMTools SNP 161568 161568 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C231:99 scaffold1729 SAMTools SNP 161622 161622 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1729 SAMTools SNP 165167 165167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 166609 166609 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1729 SAMTools SNP 166740 166740 53.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold1729 SAMTools SNP 166825 166825 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1729 SAMTools SNP 167077 167077 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C102%2C47%2C30%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.43%2C1.2e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1729 SAMTools SNP 167281 167281 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C114%2C0:99 scaffold1729 SAMTools SNP 167299 167299 35.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold1729 SAMTools SNP 167313 167313 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1729 SAMTools SNP 167551 167551 28.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C5%2C33%3BMQ%3D50%3BFQ%3D-35%3BPV4%3D1%2C1.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C8%2C0:14 scaffold1729 SAMTools SNP 167642 167642 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C15%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C187%2C0:99 scaffold1729 SAMTools SNP 168100 168100 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C44%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C1.9e-17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C91%2C0:99 scaffold1729 SAMTools SNP 202022 202022 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1729 SAMTools SNP 202105 202105 5.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1729 SAMTools SNP 202162 202162 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1729 SAMTools SNP 202196 202196 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold173 SAMTools SNP 2143 2143 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold173 SAMTools SNP 2262 2262 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.13%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C155:99 scaffold173 SAMTools SNP 3430 3430 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C30%2C0:57 scaffold173 SAMTools SNP 3508 3508 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold173 SAMTools SNP 4181 4181 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold173 SAMTools SNP 4965 4965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold173 SAMTools SNP 5733 5733 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold173 SAMTools SNP 6108 6108 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold173 SAMTools SNP 6595 6595 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold173 SAMTools SNP 6643 6643 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold173 SAMTools SNP 6946 6946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 6992 6992 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 7287 7287 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold173 SAMTools SNP 7354 7354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 7390 7390 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold173 SAMTools SNP 7947 7947 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold173 SAMTools SNP 10335 10335 176 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C252:99 scaffold173 SAMTools SNP 10356 10356 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold173 SAMTools SNP 10414 10414 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C4.2e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold173 SAMTools SNP 10595 10595 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C72%2C0:99 scaffold173 SAMTools SNP 10791 10791 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C5.1e-30%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold173 SAMTools SNP 10899 10899 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C10%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.087%2C0.33%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold173 SAMTools SNP 10902 10902 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold173 SAMTools SNP 11351 11351 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold173 SAMTools SNP 11682 11682 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold173 SAMTools SNP 11718 11718 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.24%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold173 SAMTools SNP 11730 11730 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold173 SAMTools SNP 12403 12403 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold173 SAMTools SNP 35426 35426 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold173 SAMTools SNP 36633 36633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold173 SAMTools SNP 37022 37022 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold173 SAMTools SNP 37076 37076 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold173 SAMTools SNP 37585 37585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C42%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold173 SAMTools SNP 37665 37665 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C25%2C9%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold173 SAMTools SNP 38067 38067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold173 SAMTools SNP 38553 38553 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.074%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold173 SAMTools SNP 38577 38577 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C132%2C0:99 scaffold173 SAMTools SNP 38601 38601 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C57%2C2%2C9%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.23%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold173 SAMTools SNP 39278 39278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold173 SAMTools SNP 39325 39325 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0029%2C0.25%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold173 SAMTools SNP 39364 39364 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 39376 39376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 40035 40035 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C16%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 40056 40056 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C32%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold173 SAMTools SNP 52279 52279 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold173 SAMTools SNP 52283 52283 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold173 SAMTools SNP 59127 59127 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold173 SAMTools SNP 59489 59489 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold173 SAMTools SNP 122433 122433 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C91:42 scaffold173 SAMTools SNP 160123 160123 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C218:99 scaffold173 SAMTools SNP 163706 163706 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold173 SAMTools SNP 163968 163968 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold173 SAMTools SNP 163998 163998 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold173 SAMTools SNP 164013 164013 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold173 SAMTools SNP 165049 165049 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold173 SAMTools SNP 166267 166267 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.062%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold173 SAMTools SNP 169621 169621 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold173 SAMTools SNP 187897 187897 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold173 SAMTools SNP 187969 187969 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C15%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold173 SAMTools SNP 188226 188226 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C108%2C0:99 scaffold173 SAMTools SNP 188259 188259 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold173 SAMTools SNP 188328 188328 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C232:99 scaffold173 SAMTools SNP 188551 188551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C10%2C2%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.17%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 189304 189304 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.046%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold173 SAMTools SNP 189408 189408 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C14%2C5%3BMQ%3D48%3BFQ%3D97%3BPV4%3D1%2C1.1e-13%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C230:99 scaffold173 SAMTools SNP 189746 189746 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.069%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold173 SAMTools SNP 192885 192885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold173 SAMTools SNP 192936 192936 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold173 SAMTools SNP 193670 193670 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C41%2C12%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C6.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold173 SAMTools SNP 199107 199107 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.2%2C3.8e-11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C233:43 scaffold173 SAMTools SNP 216559 216559 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C171%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold173 SAMTools SNP 216619 216619 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C175%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold173 SAMTools SNP 217089 217089 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1730 SAMTools SNP 23828 23828 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1730 SAMTools SNP 23943 23943 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1730 SAMTools SNP 23972 23972 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1730 SAMTools SNP 62473 62473 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C131%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1730 SAMTools SNP 62504 62504 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C149%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1730 SAMTools SNP 65268 65268 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold1730 SAMTools SNP 65269 65269 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1730 SAMTools SNP 82283 82283 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C5%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 88037 88037 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0131%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.18%2C0.029%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C210:31 scaffold1730 SAMTools SNP 88214 88214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C5%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.25%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 88629 88629 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 88655 88655 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C1%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 89014 89014 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.2e-15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1730 SAMTools SNP 89179 89179 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1730 SAMTools SNP 89187 89187 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C207:96 scaffold1730 SAMTools SNP 89330 89330 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C225:89 scaffold1730 SAMTools SNP 91121 91121 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1730 SAMTools SNP 112359 112359 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1730 SAMTools SNP 112360 112360 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold1730 SAMTools SNP 112361 112361 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.015%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold1730 SAMTools SNP 128568 128568 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1730 SAMTools SNP 128627 128627 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1730 SAMTools SNP 142783 142783 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1730 SAMTools SNP 159303 159303 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold1730 SAMTools SNP 161740 161740 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1730 SAMTools SNP 169483 169483 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1730 SAMTools SNP 183147 183147 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1730 SAMTools SNP 184419 184419 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1730 SAMTools SNP 184435 184435 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1730 SAMTools SNP 184642 184642 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold1730 SAMTools SNP 184655 184655 53.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1730 SAMTools SNP 185295 185295 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1730 SAMTools SNP 185308 185308 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1730 SAMTools SNP 186429 186429 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0047%2C9.9e-19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C186:44 scaffold1730 SAMTools SNP 187286 187286 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold1730 SAMTools SNP 187322 187322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1730 SAMTools SNP 188707 188707 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.081%2C0.0055%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C251:98 scaffold1730 SAMTools SNP 188745 188745 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1730 SAMTools SNP 188814 188814 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 191068 191068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1730 SAMTools SNP 191071 191071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1730 SAMTools SNP 192125 192125 13.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1730 SAMTools SNP 192153 192153 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1730 SAMTools SNP 196063 196063 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1730 SAMTools SNP 197477 197477 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1730 SAMTools SNP 197513 197513 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1730 SAMTools SNP 198847 198847 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1730 SAMTools SNP 219696 219696 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1730 SAMTools SNP 220643 220643 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C31%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1730 SAMTools SNP 220673 220673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C27%2C32%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D0.25%2C0.25%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1730 SAMTools SNP 222369 222369 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1730 SAMTools SNP 222667 222667 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1730 SAMTools SNP 227674 227674 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1730 SAMTools SNP 243046 243046 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1730 SAMTools SNP 248356 248356 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1730 SAMTools SNP 248385 248385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1730 SAMTools SNP 248578 248578 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold1730 SAMTools SNP 248587 248587 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1730 SAMTools SNP 260718 260718 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1730 SAMTools SNP 261936 261936 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1730 SAMTools SNP 261955 261955 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1730 SAMTools SNP 264746 264746 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1730 SAMTools SNP 265789 265789 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1730 SAMTools SNP 265794 265794 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1730 SAMTools SNP 265796 265796 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1730 SAMTools SNP 265799 265799 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1730 SAMTools SNP 265889 265889 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1733 SAMTools SNP 8679 8679 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 8753 8753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 8831 8831 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 8848 8848 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 10609 10609 71.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold1733 SAMTools SNP 19596 19596 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold1733 SAMTools SNP 19644 19644 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C27%2C0:51 scaffold1733 SAMTools SNP 19680 19680 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold1733 SAMTools SNP 24254 24254 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold1733 SAMTools SNP 24262 24262 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1733 SAMTools SNP 24310 24310 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1733 SAMTools SNP 32184 32184 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1733 SAMTools SNP 33363 33363 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1733 SAMTools SNP 55446 55446 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C59%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C184%2C0:99 scaffold1733 SAMTools SNP 55495 55495 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1733 SAMTools SNP 56301 56301 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1733 SAMTools SNP 56337 56337 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C214:99 scaffold1733 SAMTools SNP 57597 57597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1733 SAMTools SNP 57747 57747 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1733 SAMTools SNP 58427 58427 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C67%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1733 SAMTools SNP 58976 58976 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.048%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1733 SAMTools SNP 59739 59739 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 59794 59794 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1733 SAMTools SNP 66901 66901 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1733 SAMTools SNP 72276 72276 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1733 SAMTools SNP 77846 77846 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1733 SAMTools SNP 77903 77903 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1733 SAMTools SNP 77930 77930 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1733 SAMTools SNP 95304 95304 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1733 SAMTools SNP 107288 107288 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1733 SAMTools SNP 107648 107648 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1733 SAMTools SNP 107702 107702 39.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1733 SAMTools SNP 108840 108840 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 108858 108858 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1733 SAMTools SNP 111172 111172 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-36%3BPV4%3D1%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C9%2C0:16 scaffold1733 SAMTools SNP 111199 111199 53.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D29%3BFQ%3D-32%3BPV4%3D1%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C5%2C0:9 scaffold1733 SAMTools SNP 111380 111380 84.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D33%3BFQ%3D-34%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C7%2C0:12 scaffold1733 SAMTools SNP 121916 121916 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold1733 SAMTools SNP 121979 121979 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1733 SAMTools SNP 122485 122485 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1733 SAMTools SNP 124209 124209 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1733 SAMTools SNP 124826 124826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1733 SAMTools SNP 124835 124835 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1733 SAMTools SNP 125183 125183 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1733 SAMTools SNP 125207 125207 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1733 SAMTools SNP 125222 125222 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1733 SAMTools SNP 125252 125252 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1733 SAMTools SNP 125644 125644 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1733 SAMTools SNP 125665 125665 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C18%2C0:33 scaffold1733 SAMTools SNP 125671 125671 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C225:79 scaffold1733 SAMTools SNP 125992 125992 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1733 SAMTools SNP 126024 126024 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1733 SAMTools SNP 126127 126127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 126136 126136 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1733 SAMTools SNP 126530 126530 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1733 SAMTools SNP 126595 126595 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 126608 126608 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 127052 127052 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 127073 127073 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 127420 127420 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 127435 127435 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1733 SAMTools SNP 129653 129653 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1733 SAMTools SNP 129664 129664 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1733 SAMTools SNP 129665 129665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1733 SAMTools SNP 130309 130309 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C226:33 scaffold1733 SAMTools SNP 133615 133615 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.21%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1733 SAMTools SNP 134471 134471 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0051%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1733 SAMTools SNP 134846 134846 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1733 SAMTools SNP 136133 136133 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C47%2C0%2C19%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.33%2C8.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1733 SAMTools SNP 136627 136627 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1733 SAMTools SNP 137119 137119 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1.1e-05%2C8.1e-10%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1733 SAMTools SNP 137878 137878 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1733 SAMTools SNP 160902 160902 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1733 SAMTools SNP 163617 163617 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.47%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1733 SAMTools SNP 163618 163618 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1733 SAMTools SNP 179137 179137 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold1733 SAMTools SNP 231841 231841 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C78%2C0:99 scaffold1734 SAMTools SNP 6781 6781 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1734 SAMTools SNP 6793 6793 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1734 SAMTools SNP 10006 10006 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1734 SAMTools SNP 64533 64533 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1734 SAMTools SNP 64594 64594 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.35%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C35:38 scaffold1734 SAMTools SNP 64652 64652 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1734 SAMTools SNP 65346 65346 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1734 SAMTools SNP 65395 65395 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1734 SAMTools SNP 157614 157614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1734 SAMTools SNP 159318 159318 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1734 SAMTools SNP 159319 159319 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1734 SAMTools SNP 159538 159538 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C1%3BMQ%3D48%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1734 SAMTools SNP 159697 159697 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1734 SAMTools SNP 160844 160844 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1734 SAMTools SNP 179210 179210 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1734 SAMTools SNP 183255 183255 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1734 SAMTools SNP 185964 185964 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.36%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C116:34 scaffold1734 SAMTools SNP 186649 186649 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.087%2C1%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1734 SAMTools SNP 186653 186653 64.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.37%2C4.7e-09%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C2:5 scaffold1734 SAMTools SNP 209726 209726 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1734 SAMTools SNP 218833 218833 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1735 SAMTools SNP 10664 10664 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1735 SAMTools SNP 10681 10681 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1735 SAMTools SNP 10762 10762 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1735 SAMTools SNP 10833 10833 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1735 SAMTools SNP 23991 23991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C201%2C11%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 24760 24760 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C22%2C11%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-08%2C1%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 24784 24784 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 25758 25758 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 25761 25761 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1735 SAMTools SNP 26199 26199 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1735 SAMTools SNP 26220 26220 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C0.062%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1735 SAMTools SNP 26307 26307 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.25%2C8.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1735 SAMTools SNP 28522 28522 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0041%2C1.7e-118%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1735 SAMTools SNP 29434 29434 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1735 SAMTools SNP 29812 29812 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D42%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1735 SAMTools SNP 30644 30644 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C25%2C61%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.11%2C1.1e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1735 SAMTools SNP 33889 33889 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C38:41 scaffold1735 SAMTools SNP 33930 33930 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1735 SAMTools SNP 34881 34881 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1735 SAMTools SNP 34898 34898 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1735 SAMTools SNP 34957 34957 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1735 SAMTools SNP 34963 34963 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1735 SAMTools SNP 35250 35250 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1735 SAMTools SNP 36620 36620 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1735 SAMTools SNP 51926 51926 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C2%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.6%2C8.6e-14%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1735 SAMTools SNP 52066 52066 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.16%2C7.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1735 SAMTools SNP 52341 52341 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C4.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C195:69 scaffold1735 SAMTools SNP 52757 52757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1735 SAMTools SNP 52798 52798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1735 SAMTools SNP 53340 53340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C44%2C53%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 53980 53980 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1735 SAMTools SNP 53998 53998 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1735 SAMTools SNP 55760 55760 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C15%2C26%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.064%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1735 SAMTools SNP 55769 55769 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1735 SAMTools SNP 55784 55784 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C34%2C10%2C15%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C2.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1735 SAMTools SNP 55913 55913 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C1%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.31%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C247:99 scaffold1735 SAMTools SNP 55946 55946 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1735 SAMTools SNP 55961 55961 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1735 SAMTools SNP 56106 56106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1735 SAMTools SNP 56121 56121 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1735 SAMTools SNP 56196 56196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1735 SAMTools SNP 56229 56229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1735 SAMTools SNP 56268 56268 75.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold1735 SAMTools SNP 56427 56427 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C25%2C40%2C15%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.44%2C1.2e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1735 SAMTools SNP 56460 56460 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1735 SAMTools SNP 56643 56643 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C16%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C190%2C0:99 scaffold1735 SAMTools SNP 56958 56958 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1735 SAMTools SNP 57000 57000 64.3 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0%2C92%2C2%2C89:27 scaffold1735 SAMTools SNP 57086 57086 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1735 SAMTools SNP 57087 57087 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1735 SAMTools SNP 60659 60659 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1735 SAMTools SNP 60683 60683 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 61073 61073 68 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0%2C93%2C9%2C90:51 scaffold1735 SAMTools SNP 62881 62881 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D665%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C191%2C89%2C142%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.79%2C1.1e-246%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1735 SAMTools SNP 63532 63532 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1735 SAMTools SNP 63568 63568 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C7%2C22%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.24%2C1.4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1735 SAMTools SNP 63724 63724 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C21%2C20%2C21%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.21%2C7.1e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1735 SAMTools SNP 63820 63820 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C117%2C0:99 scaffold1735 SAMTools SNP 63904 63904 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C41%2C19%2C81%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1.9e-08%2C1e-99%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1735 SAMTools SNP 63979 63979 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C55%2C42%2C62%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.16%2C5.4e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1735 SAMTools SNP 64075 64075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C55%2C14%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C2.3e-31%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1735 SAMTools SNP 64171 64171 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1735 SAMTools SNP 65118 65118 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1735 SAMTools SNP 65635 65635 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C32%2C18%3BMQ%3D48%3BFQ%3D-131%3BPV4%3D0.37%2C0.084%2C0.39%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1735 SAMTools SNP 67204 67204 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C18%2C0:33 scaffold1735 SAMTools SNP 67660 67660 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C61%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C232%2C0:99 scaffold1735 SAMTools SNP 70281 70281 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1735 SAMTools SNP 72598 72598 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1735 SAMTools SNP 72612 72612 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1735 SAMTools SNP 74820 74820 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C166:52 scaffold1735 SAMTools SNP 78792 78792 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold1735 SAMTools SNP 79443 79443 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1735 SAMTools SNP 81958 81958 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1735 SAMTools SNP 82022 82022 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1736 SAMTools SNP 871 871 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 875 875 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 1053 1053 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1736 SAMTools SNP 1112 1112 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1736 SAMTools SNP 1162 1162 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1736 SAMTools SNP 2400 2400 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D68.6%3BPV4%3D0.45%2C0.00062%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C106:99 scaffold1736 SAMTools SNP 2411 2411 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.18%2C1%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1736 SAMTools SNP 2689 2689 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C27%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1736 SAMTools SNP 3276 3276 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1736 SAMTools SNP 3280 3280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 3285 3285 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 4847 4847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1736 SAMTools SNP 5341 5341 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold1736 SAMTools SNP 14492 14492 93 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 14494 14494 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1736 SAMTools SNP 15000 15000 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.1e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1736 SAMTools SNP 15745 15745 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 15969 15969 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C248:70 scaffold1736 SAMTools SNP 16003 16003 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1736 SAMTools SNP 16004 16004 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 16613 16613 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C57%2C0:99 scaffold1736 SAMTools SNP 17803 17803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C26%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1736 SAMTools SNP 17879 17879 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1736 SAMTools SNP 18142 18142 64 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D1213%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0%2C96%2C16%2C93:51 scaffold1736 SAMTools SNP 18228 18228 75 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D1237%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C51%2C0%2C99%2C29%2C96:99 scaffold1736 SAMTools SNP 43494 43494 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C58:61 scaffold1736 SAMTools SNP 45786 45786 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 49356 49356 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C27%2C0:51 scaffold1736 SAMTools SNP 50537 50537 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 80431 80431 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.038%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1736 SAMTools SNP 80446 80446 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.18%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C210:99 scaffold1736 SAMTools SNP 90958 90958 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C8%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00079%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1736 SAMTools SNP 90973 90973 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1736 SAMTools SNP 91013 91013 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.004%2C1.7e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1736 SAMTools SNP 91051 91051 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.068%2C4.6e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1736 SAMTools SNP 92511 92511 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C8%2C14%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.17%2C8.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1736 SAMTools SNP 92694 92694 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 93026 93026 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1736 SAMTools SNP 95285 95285 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1736 SAMTools SNP 98876 98876 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1736 SAMTools SNP 99352 99352 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C9.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C246:91 scaffold1736 SAMTools SNP 100261 100261 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.0017%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C157:99 scaffold1736 SAMTools SNP 101265 101265 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.17%2C0.0062%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C162:51 scaffold1736 SAMTools SNP 107504 107504 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 107537 107537 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1736 SAMTools SNP 107776 107776 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1736 SAMTools SNP 108867 108867 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold1736 SAMTools SNP 110002 110002 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 110010 110010 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 112506 112506 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C35:38 scaffold1736 SAMTools SNP 117303 117303 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 120810 120810 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 120905 120905 43.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1736 SAMTools SNP 125876 125876 50.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold1736 SAMTools SNP 132709 132709 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1736 SAMTools SNP 132732 132732 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1736 SAMTools SNP 133135 133135 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1736 SAMTools SNP 133947 133947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1736 SAMTools SNP 136293 136293 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1736 SAMTools SNP 137154 137154 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1736 SAMTools SNP 138119 138119 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C1%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1736 SAMTools SNP 139216 139216 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C104:41 scaffold1736 SAMTools SNP 139566 139566 27.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1736 SAMTools SNP 155498 155498 7.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1736 SAMTools SNP 159705 159705 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1736 SAMTools SNP 161178 161178 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1736 SAMTools SNP 161193 161193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C0.035%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 161223 161223 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 161881 161881 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1736 SAMTools SNP 163655 163655 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 167268 167268 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 167307 167307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 169647 169647 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1736 SAMTools SNP 188354 188354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1736 SAMTools SNP 189090 189090 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C51%2C0:99 scaffold1736 SAMTools SNP 212955 212955 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1736 SAMTools SNP 212977 212977 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C183:99 scaffold1736 SAMTools SNP 213256 213256 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 213313 213313 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1736 SAMTools SNP 216757 216757 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1736 SAMTools SNP 219404 219404 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1736 SAMTools SNP 219525 219525 6.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold1736 SAMTools SNP 220830 220830 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D41%3BFQ%3D16.1%3BPV4%3D1%2C0.2%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C80:46 scaffold1736 SAMTools SNP 221063 221063 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 221072 221072 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 221296 221296 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1736 SAMTools SNP 221750 221750 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1736 SAMTools SNP 222018 222018 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D31%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C38:41 scaffold1736 SAMTools SNP 224209 224209 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C4%2C8%2C0%3BMQ%3D48%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1736 SAMTools SNP 224594 224594 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C13%3BMQ%3D47%3BFQ%3D182%3BPV4%3D0.13%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1736 SAMTools SNP 230099 230099 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1736 SAMTools SNP 230222 230222 5.83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C12%2C0:13 scaffold1736 SAMTools SNP 231219 231219 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1736 SAMTools SNP 236282 236282 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1736 SAMTools SNP 236309 236309 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1736 SAMTools SNP 238907 238907 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 238931 238931 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1736 SAMTools SNP 239283 239283 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1736 SAMTools SNP 239507 239507 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 239552 239552 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 243470 243470 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1736 SAMTools SNP 243696 243696 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D45%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C72%2C0:99 scaffold1736 SAMTools SNP 245826 245826 29.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1736 SAMTools SNP 245844 245844 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 250342 250342 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 250375 250375 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C207:99 scaffold1736 SAMTools SNP 250399 250399 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C217:99 scaffold1736 SAMTools SNP 250946 250946 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1736 SAMTools SNP 250952 250952 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.36%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold1736 SAMTools SNP 250995 250995 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1736 SAMTools SNP 251137 251137 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1736 SAMTools SNP 251219 251219 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold1736 SAMTools SNP 251858 251858 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 252035 252035 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1736 SAMTools SNP 252038 252038 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.34%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold1736 SAMTools SNP 252615 252615 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D39%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C6%2C0:10 scaffold1736 SAMTools SNP 253504 253504 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D14%2C10%2C0%2C4%3BMQ%3D19%3BFQ%3D-52%3BPV4%3D0.098%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C25%2C0:47 scaffold1736 SAMTools SNP 253875 253875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D34%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1736 SAMTools SNP 254125 254125 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 254345 254345 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D35%3BFQ%3D48%3BPV4%3D1%2C0.35%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C148:78 scaffold1736 SAMTools SNP 254606 254606 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.58%2C2.4e-07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C134:99 scaffold1736 SAMTools SNP 258626 258626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3427%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C185%2C3239%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.39%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1736 SAMTools SNP 258655 258655 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4677%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C2258%2C87%2C2205%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 259750 259750 13.9 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C43%2C37%2C44%2C0%2C41:10 scaffold1736 SAMTools SNP 259836 259836 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3510%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3230%2C207%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1736 SAMTools SNP 261293 261293 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2544%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D602%2C515%2C496%2C858%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-18%2C1%2C0.41%2C8.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 262017 262017 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 268932 268932 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 275589 275589 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 276234 276234 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 314847 314847 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-4.18%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C25:28 scaffold1736 SAMTools SNP 314953 314953 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.099%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C190:99 scaffold1736 SAMTools SNP 314974 314974 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C241:99 scaffold1736 SAMTools SNP 315410 315410 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C14%2C1%3BMQ%3D34%3BFQ%3D103%3BPV4%3D0.45%2C1%2C0.0012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C143:99 scaffold1736 SAMTools SNP 315514 315514 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D26%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C45%2C0:87 scaffold1736 SAMTools SNP 315847 315847 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 315853 315853 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 315865 315865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 325400 325400 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1736 SAMTools SNP 325505 325505 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1736 SAMTools SNP 326698 326698 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1736 SAMTools SNP 328212 328212 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1736 SAMTools SNP 328237 328237 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 329214 329214 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1736 SAMTools SNP 329223 329223 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 329740 329740 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1736 SAMTools SNP 330221 330221 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold1736 SAMTools SNP 331995 331995 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold1736 SAMTools SNP 332489 332489 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1736 SAMTools SNP 333229 333229 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 333241 333241 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 333262 333262 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1736 SAMTools SNP 333460 333460 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C24%2C0:44 scaffold1736 SAMTools SNP 333604 333604 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.24%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1736 SAMTools SNP 333679 333679 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1736 SAMTools SNP 334880 334880 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.061%2C1.4e-11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C96:77 scaffold1736 SAMTools SNP 336287 336287 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C90%2C0:99 scaffold1736 SAMTools SNP 336725 336725 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold1736 SAMTools SNP 336744 336744 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1736 SAMTools SNP 337183 337183 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 337185 337185 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1736 SAMTools SNP 337346 337346 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1736 SAMTools SNP 337819 337819 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1736 SAMTools SNP 337829 337829 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 339865 339865 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1736 SAMTools SNP 339899 339899 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1736 SAMTools SNP 340236 340236 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold1736 SAMTools SNP 341894 341894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 343089 343089 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold1736 SAMTools SNP 344157 344157 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1736 SAMTools SNP 344172 344172 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold1736 SAMTools SNP 344221 344221 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0017%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C247:62 scaffold1736 SAMTools SNP 346364 346364 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1736 SAMTools SNP 355100 355100 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 355174 355174 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D37%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C60%2C0:99 scaffold1736 SAMTools SNP 355462 355462 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D33%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C139:48 scaffold1736 SAMTools SNP 355492 355492 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C30%2C0:46 scaffold1736 SAMTools SNP 359542 359542 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 362396 362396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C20%2C29%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1736 SAMTools SNP 362450 362450 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C31%2C18%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D7.6e-05%2C1%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1736 SAMTools SNP 368228 368228 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C51%2C0:99 scaffold1736 SAMTools SNP 369310 369310 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1736 SAMTools SNP 369329 369329 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1736 SAMTools SNP 373422 373422 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C4.3e-17%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C210:99 scaffold1736 SAMTools SNP 374728 374728 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1736 SAMTools SNP 374965 374965 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1e-17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C93:34 scaffold1736 SAMTools SNP 375235 375235 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C183:81 scaffold1736 SAMTools SNP 375325 375325 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.091%2C5.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C201:34 scaffold1736 SAMTools SNP 375580 375580 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C5.3e-20%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C201:99 scaffold1736 SAMTools SNP 375689 375689 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 381763 381763 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C11%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C237:99 scaffold1736 SAMTools SNP 383434 383434 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 390769 390769 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C37:34 scaffold1736 SAMTools SNP 390792 390792 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 396096 396096 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.19%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1736 SAMTools SNP 396108 396108 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1736 SAMTools SNP 397933 397933 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1736 SAMTools SNP 397951 397951 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1736 SAMTools SNP 397986 397986 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 398436 398436 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1736 SAMTools SNP 400059 400059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 400426 400426 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1736 SAMTools SNP 400441 400441 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1736 SAMTools SNP 400843 400843 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1736 SAMTools SNP 400845 400845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1736 SAMTools SNP 400921 400921 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.51%2C2.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1736 SAMTools SNP 401188 401188 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1736 SAMTools SNP 401224 401224 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1736 SAMTools SNP 401236 401236 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 401992 401992 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 404314 404314 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1736 SAMTools SNP 405423 405423 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C17%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.071%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C250:99 scaffold1736 SAMTools SNP 406052 406052 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1736 SAMTools SNP 406080 406080 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1736 SAMTools SNP 406155 406155 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1736 SAMTools SNP 406158 406158 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C190:99 scaffold1736 SAMTools SNP 406586 406586 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1736 SAMTools SNP 406611 406611 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1736 SAMTools SNP 406638 406638 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C19%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.37%2C0.00011%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C229:99 scaffold1736 SAMTools SNP 406935 406935 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1736 SAMTools SNP 407166 407166 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1736 SAMTools SNP 407169 407169 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1736 SAMTools SNP 407582 407582 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C9%2C17%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.69%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1736 SAMTools SNP 407635 407635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.36%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold1736 SAMTools SNP 407686 407686 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.057%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1736 SAMTools SNP 408533 408533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.0065%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 409459 409459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C56%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1736 SAMTools SNP 410582 410582 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1736 SAMTools SNP 410593 410593 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.9e-10%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1736 SAMTools SNP 410610 410610 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C16%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C4.6e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1736 SAMTools SNP 410647 410647 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C9%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D7.3e-09%2C1%2C1%2C3.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1736 SAMTools SNP 410678 410678 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D73%3BPV4%3D4.3e-05%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1736 SAMTools SNP 410851 410851 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C29%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C40%2C0:77 scaffold1736 SAMTools SNP 412220 412220 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1736 SAMTools SNP 412448 412448 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 412493 412493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1736 SAMTools SNP 412787 412787 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.17%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold1736 SAMTools SNP 413029 413029 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1736 SAMTools SNP 413065 413065 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1736 SAMTools SNP 413077 413077 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.044%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C74:77 scaffold1736 SAMTools SNP 413122 413122 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C21%2C0:39 scaffold1736 SAMTools SNP 413146 413146 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1736 SAMTools SNP 413733 413733 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.26%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1736 SAMTools SNP 413776 413776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.31%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 414179 414179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1736 SAMTools SNP 414680 414680 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1736 SAMTools SNP 415124 415124 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0061%2C0.028%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C186:56 scaffold1736 SAMTools SNP 415546 415546 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1736 SAMTools SNP 419860 419860 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold1736 SAMTools SNP 420578 420578 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C31%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1736 SAMTools SNP 421067 421067 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1736 SAMTools SNP 428366 428366 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C212:55 scaffold1736 SAMTools SNP 429017 429017 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C24%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1736 SAMTools SNP 429020 429020 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.69%2C0.32%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1736 SAMTools SNP 429041 429041 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C16%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.14%2C0.063%2C1%2C8.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1736 SAMTools SNP 430450 430450 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 430684 430684 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 430732 430732 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C29%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.31%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C240:99 scaffold1736 SAMTools SNP 431232 431232 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C19%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C65:68 scaffold1736 SAMTools SNP 431247 431247 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1736 SAMTools SNP 431274 431274 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 431280 431280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 432205 432205 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1736 SAMTools SNP 432239 432239 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 433032 433032 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.011%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1736 SAMTools SNP 434019 434019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1736 SAMTools SNP 434142 434142 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1736 SAMTools SNP 434328 434328 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 435515 435515 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1736 SAMTools SNP 436065 436065 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-05%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 438203 438203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 438224 438224 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1736 SAMTools SNP 438242 438242 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.34%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C77:80 scaffold1736 SAMTools SNP 440116 440116 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C0%2C32%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1736 SAMTools SNP 440321 440321 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C32%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.12%2C0.16%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1736 SAMTools SNP 442130 442130 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1736 SAMTools SNP 445923 445923 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4177%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1090%2C775%2C1630%2C677%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-16%2C1%2C1%2C1.9e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 445962 445962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2913%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D504%2C685%2C1218%2C506%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-52%2C9.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 446010 446010 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3437%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D790%2C962%2C585%2C984%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-06%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 448830 448830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7462%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2837%2C788%2C3065%2C223%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 450943 450943 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C3%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1736 SAMTools SNP 450945 450945 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C3%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1736 SAMTools SNP 456846 456846 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C30%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1736 SAMTools SNP 456876 456876 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.38%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C203:99 scaffold1736 SAMTools SNP 456916 456916 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D31.8%3BPV4%3D1%2C5.1e-11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C60:62 scaffold1736 SAMTools SNP 457373 457373 120 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C87%2C0%2C154%2C73%2C151:99 scaffold1736 SAMTools SNP 458149 458149 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C72%2C36%2C85%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.081%2C3.2e-170%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1736 SAMTools SNP 459946 459946 31.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1736 SAMTools SNP 461553 461553 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1736 SAMTools SNP 461588 461588 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.11%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1736 SAMTools SNP 462899 462899 76.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C15%2C0:27 scaffold1736 SAMTools SNP 464632 464632 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 465153 465153 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1736 SAMTools SNP 465530 465530 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1736 SAMTools SNP 466023 466023 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 466038 466038 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold1736 SAMTools SNP 466045 466045 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.14%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold1736 SAMTools SNP 466095 466095 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1736 SAMTools SNP 468930 468930 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C51%2C0:99 scaffold1736 SAMTools SNP 472871 472871 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1736 SAMTools SNP 472931 472931 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1736 SAMTools SNP 473391 473391 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1736 SAMTools SNP 474360 474360 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1736 SAMTools SNP 475394 475394 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 477503 477503 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1736 SAMTools SNP 482532 482532 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C105%2C91%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 483501 483501 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C115%2C0%2C109%3BMQ%3D50%3BFQ%3D161%3BPV4%3D7.7e-05%2C3.1e-26%2C1%2C3.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1736 SAMTools SNP 486115 486115 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C6%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 487458 487458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 487789 487789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1736 SAMTools SNP 487863 487863 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C38%2C73%2C42%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00071%2C3.3e-82%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1736 SAMTools SNP 487902 487902 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C90%2C0%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1736 SAMTools SNP 495125 495125 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.1e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C110:41 scaffold1736 SAMTools SNP 496353 496353 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C86%2C0%2C164%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1736 SAMTools SNP 496381 496381 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.29%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C229:99 scaffold1736 SAMTools SNP 500633 500633 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 501591 501591 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1736 SAMTools SNP 513968 513968 76.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C14%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C3.3e-17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C4%2C0:7 scaffold1736 SAMTools SNP 514835 514835 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.51%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1736 SAMTools SNP 519540 519540 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1736 SAMTools SNP 539897 539897 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D71.9%3BPV4%3D1%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C101:99 scaffold1736 SAMTools SNP 540285 540285 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1736 SAMTools SNP 540312 540312 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.14%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1736 SAMTools SNP 540342 540342 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1736 SAMTools SNP 543622 543622 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.36%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1736 SAMTools SNP 547638 547638 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1736 SAMTools SNP 547676 547676 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1736 SAMTools SNP 550412 550412 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1736 SAMTools SNP 550418 550418 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1736 SAMTools SNP 550463 550463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C25%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.22%2C0.38%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1736 SAMTools SNP 555001 555001 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1736 SAMTools SNP 555087 555087 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C2%2C20%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.24%2C1.2e-27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1736 SAMTools SNP 556280 556280 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C5%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1736 SAMTools SNP 563346 563346 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1736 SAMTools SNP 565104 565104 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1736 SAMTools SNP 567314 567314 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1736 SAMTools SNP 568325 568325 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1736 SAMTools SNP 569311 569311 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C96:99 scaffold1736 SAMTools SNP 569324 569324 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1736 SAMTools SNP 569380 569380 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.38%2C0.021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C235:41 scaffold1736 SAMTools SNP 569420 569420 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1736 SAMTools SNP 569812 569812 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00016%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1736 SAMTools SNP 569826 569826 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C0.49%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1736 SAMTools SNP 570677 570677 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C51%2C0:99 scaffold1736 SAMTools SNP 570751 570751 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold1736 SAMTools SNP 570852 570852 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1736 SAMTools SNP 571563 571563 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1736 SAMTools SNP 571797 571797 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.24%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C214:99 scaffold1736 SAMTools SNP 571841 571841 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1736 SAMTools SNP 571847 571847 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1736 SAMTools SNP 663507 663507 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1737 SAMTools SNP 54352 54352 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1737 SAMTools SNP 54866 54866 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C2%2C10%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.67%2C0.0048%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1737 SAMTools SNP 54903 54903 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C0%2C9%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.57%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1737 SAMTools SNP 54979 54979 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1737 SAMTools SNP 58679 58679 111 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1737 SAMTools SNP 58697 58697 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C51:54 scaffold1737 SAMTools SNP 58939 58939 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold1737 SAMTools SNP 71943 71943 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1737 SAMTools SNP 85141 85141 17.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1737 SAMTools SNP 113689 113689 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1737 SAMTools SNP 120514 120514 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 123804 123804 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 123899 123899 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 124036 124036 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1737 SAMTools SNP 319981 319981 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1737 SAMTools SNP 399410 399410 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C17%2C21%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.49%2C5.6e-51%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1737 SAMTools SNP 399972 399972 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 400029 400029 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C210:99 scaffold1737 SAMTools SNP 405017 405017 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1737 SAMTools SNP 406951 406951 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1737 SAMTools SNP 407133 407133 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1737 SAMTools SNP 407193 407193 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1737 SAMTools SNP 408304 408304 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1737 SAMTools SNP 408424 408424 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1737 SAMTools SNP 408514 408514 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1737 SAMTools SNP 408872 408872 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1737 SAMTools SNP 410432 410432 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 410498 410498 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.088%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C205:99 scaffold1737 SAMTools SNP 410513 410513 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold1737 SAMTools SNP 411179 411179 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1737 SAMTools SNP 411636 411636 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 412165 412165 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 422791 422791 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 425258 425258 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C12%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1737 SAMTools SNP 425375 425375 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1737 SAMTools SNP 426313 426313 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C129%2C0:99 scaffold1737 SAMTools SNP 435325 435325 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 474995 474995 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 475015 475015 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 475295 475295 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.1e-17%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C247:54 scaffold1737 SAMTools SNP 475409 475409 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1737 SAMTools SNP 476114 476114 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C127:99 scaffold1737 SAMTools SNP 476177 476177 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1737 SAMTools SNP 476192 476192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1737 SAMTools SNP 477640 477640 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1737 SAMTools SNP 477899 477899 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1737 SAMTools SNP 478961 478961 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1737 SAMTools SNP 478973 478973 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C14%2C0%3BMQ%3D47%3BFQ%3D172%3BPV4%3D0.11%2C0.0016%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1737 SAMTools SNP 479060 479060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C2%3BMQ%3D46%3BFQ%3D-40%3BPV4%3D1%2C1%2C0.35%2C9.5e-07;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1737 SAMTools SNP 479078 479078 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D44%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1737 SAMTools SNP 479214 479214 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1737 SAMTools SNP 482138 482138 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D97.8%3BPV4%3D0.58%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C138:99 scaffold1737 SAMTools SNP 485501 485501 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1737 SAMTools SNP 486399 486399 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1737 SAMTools SNP 486561 486561 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1737 SAMTools SNP 487831 487831 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C18%2C0:33 scaffold1737 SAMTools SNP 487839 487839 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1737 SAMTools SNP 491769 491769 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C1%2C6%3BMQ%3D49%3BFQ%3D114%3BPV4%3D1%2C0.32%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1737 SAMTools SNP 491805 491805 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C25%3BMQ%3D46%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1737 SAMTools SNP 493070 493070 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1737 SAMTools SNP 493479 493479 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 493795 493795 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1737 SAMTools SNP 493839 493839 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1737 SAMTools SNP 494320 494320 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold1737 SAMTools SNP 494411 494411 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.019%2C6.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1737 SAMTools SNP 494651 494651 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C0.15%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1737 SAMTools SNP 494942 494942 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D7.9e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1737 SAMTools SNP 494987 494987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1737 SAMTools SNP 496339 496339 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1737 SAMTools SNP 497500 497500 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1737 SAMTools SNP 497898 497898 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.057%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1737 SAMTools SNP 500487 500487 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.073%2C0.35%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1737 SAMTools SNP 501227 501227 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C13%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00086%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1737 SAMTools SNP 501441 501441 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1737 SAMTools SNP 501471 501471 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C215:99 scaffold1737 SAMTools SNP 501510 501510 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1737 SAMTools SNP 501959 501959 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1737 SAMTools SNP 503024 503024 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1737 SAMTools SNP 503033 503033 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1737 SAMTools SNP 504736 504736 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1737 SAMTools SNP 504811 504811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C10%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold1737 SAMTools SNP 505141 505141 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1737 SAMTools SNP 505210 505210 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C24%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1737 SAMTools SNP 505538 505538 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 506555 506555 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1737 SAMTools SNP 509535 509535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C24%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1737 SAMTools SNP 509547 509547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1737 SAMTools SNP 509616 509616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1737 SAMTools SNP 510053 510053 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C7.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1737 SAMTools SNP 510564 510564 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 511902 511902 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C0%2C9%3BMQ%3D48%3BFQ%3D119%3BPV4%3D0.047%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1737 SAMTools SNP 511905 511905 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C1%2C10%3BMQ%3D48%3BFQ%3D179%3BPV4%3D0.14%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1737 SAMTools SNP 512422 512422 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C2%3BMQ%3D48%3BFQ%3D121%3BPV4%3D0.28%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1737 SAMTools SNP 512473 512473 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C2%2C2%3BMQ%3D49%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1737 SAMTools SNP 512481 512481 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C6%2C4%3BMQ%3D49%3BFQ%3D186%3BPV4%3D0.72%2C0.38%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1737 SAMTools SNP 512804 512804 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 512826 512826 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.0019%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 513367 513367 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C2%2C23%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.093%2C3.5e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1737 SAMTools SNP 513599 513599 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1737 SAMTools SNP 513809 513809 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1737 SAMTools SNP 513839 513839 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C9%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1737 SAMTools SNP 516225 516225 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1737 SAMTools SNP 517137 517137 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1737 SAMTools SNP 518620 518620 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1737 SAMTools SNP 520149 520149 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1737 SAMTools SNP 520615 520615 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1737 SAMTools SNP 520658 520658 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1737 SAMTools SNP 520683 520683 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.47%2C0.091%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C166:72 scaffold1737 SAMTools SNP 521112 521112 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1737 SAMTools SNP 521152 521152 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1737 SAMTools SNP 521253 521253 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1737 SAMTools SNP 524667 524667 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C41%3BMQ%3D50%3BFQ%3D-175%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1737 SAMTools SNP 525072 525072 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1737 SAMTools SNP 525270 525270 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1737 SAMTools SNP 525300 525300 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 525308 525308 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1737 SAMTools SNP 530879 530879 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1737 SAMTools SNP 532353 532353 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1737 SAMTools SNP 532494 532494 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.043%2C4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1737 SAMTools SNP 532572 532572 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C234:99 scaffold1737 SAMTools SNP 533348 533348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C23%2C44%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C5e-27%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 533354 533354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C9%2C45%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C4.7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 533363 533363 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C29%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1737 SAMTools SNP 538188 538188 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C29%3BMQ%3D45%3BFQ%3D206%3BPV4%3D0.036%2C1%2C0.0061%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1737 SAMTools SNP 538460 538460 206 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C32%3BMQ%3D45%3BFQ%3D209%3BPV4%3D0.45%2C1%2C0.0072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1737 SAMTools SNP 538509 538509 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1737 SAMTools SNP 538527 538527 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 5387 5387 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 5391 5391 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 5546 5546 38.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1738 SAMTools SNP 5574 5574 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1738 SAMTools SNP 28134 28134 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold1738 SAMTools SNP 29599 29599 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1738 SAMTools SNP 29652 29652 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 46435 46435 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1738 SAMTools SNP 61345 61345 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold1738 SAMTools SNP 91292 91292 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1738 SAMTools SNP 91487 91487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1738 SAMTools SNP 91504 91504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1738 SAMTools SNP 92980 92980 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1738 SAMTools SNP 93093 93093 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1738 SAMTools SNP 93107 93107 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1738 SAMTools SNP 93116 93116 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.17%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1738 SAMTools SNP 94803 94803 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1738 SAMTools SNP 94824 94824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C26%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1738 SAMTools SNP 94992 94992 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1738 SAMTools SNP 95226 95226 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1738 SAMTools SNP 95231 95231 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1738 SAMTools SNP 95262 95262 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1738 SAMTools SNP 95988 95988 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1738 SAMTools SNP 96362 96362 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 96491 96491 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 96740 96740 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.014%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1738 SAMTools SNP 96785 96785 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1738 SAMTools SNP 97038 97038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1738 SAMTools SNP 97224 97224 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1738 SAMTools SNP 97230 97230 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1738 SAMTools SNP 97273 97273 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.21%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1738 SAMTools SNP 97311 97311 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1738 SAMTools SNP 97505 97505 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1738 SAMTools SNP 97529 97529 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C66%2C0:99 scaffold1738 SAMTools SNP 97750 97750 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.066%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1738 SAMTools SNP 98499 98499 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0032%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1738 SAMTools SNP 99168 99168 45.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold1738 SAMTools SNP 99372 99372 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C105%2C0:99 scaffold1738 SAMTools SNP 105387 105387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1738 SAMTools SNP 105442 105442 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1738 SAMTools SNP 108712 108712 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.63%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1738 SAMTools SNP 108721 108721 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1738 SAMTools SNP 109597 109597 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.1%2C0.5%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1738 SAMTools SNP 110249 110249 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold1738 SAMTools SNP 110282 110282 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1738 SAMTools SNP 110402 110402 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1738 SAMTools SNP 110834 110834 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C39%2C0:75 scaffold1738 SAMTools SNP 113162 113162 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C24:27 scaffold1738 SAMTools SNP 113237 113237 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1738 SAMTools SNP 113573 113573 36.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1738 SAMTools SNP 113598 113598 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1738 SAMTools SNP 113648 113648 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1738 SAMTools SNP 114413 114413 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1738 SAMTools SNP 116589 116589 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 126788 126788 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 129492 129492 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C16%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.00074%2C3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1738 SAMTools SNP 129827 129827 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1738 SAMTools SNP 129941 129941 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C4%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1738 SAMTools SNP 131378 131378 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C55%2C0%2C32%3BMQ%3D50%3BFQ%3D144%3BPV4%3D5.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1738 SAMTools SNP 132118 132118 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1738 SAMTools SNP 132750 132750 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C32%2C17%2C11%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.83%2C1.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1738 SAMTools SNP 132843 132843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C53%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 133415 133415 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.094%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C23:26 scaffold1738 SAMTools SNP 136883 136883 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1738 SAMTools SNP 139236 139236 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1738 SAMTools SNP 140911 140911 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 140968 140968 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1738 SAMTools SNP 142691 142691 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C272%2C45%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1738 SAMTools SNP 145985 145985 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C23%2C141%2C50%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0038%2C0.023%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 146706 146706 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1738 SAMTools SNP 147464 147464 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1738 SAMTools SNP 147578 147578 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C116%2C8%2C7%3BMQ%3D48%3BFQ%3D75%3BPV4%3D2.7e-06%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1738 SAMTools SNP 147581 147581 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C134%2C7%2C15%3BMQ%3D48%3BFQ%3D109%3BPV4%3D8.4e-05%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1738 SAMTools SNP 147985 147985 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C100%2C12%2C65%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.53%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 149777 149777 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1738 SAMTools SNP 149970 149970 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1738 SAMTools SNP 151361 151361 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1738 SAMTools SNP 151385 151385 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C18%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1.4e-06%2C0.46%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 156617 156617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1738 SAMTools SNP 156641 156641 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1738 SAMTools SNP 156689 156689 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C16%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1738 SAMTools SNP 156707 156707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C19%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1738 SAMTools SNP 158515 158515 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C56%2C57%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.13%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 158575 158575 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C34%2C76%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 160140 160140 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C167%2C4%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1738 SAMTools SNP 161342 161342 58.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C2.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C5:8 scaffold1738 SAMTools SNP 176152 176152 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1738 SAMTools SNP 176172 176172 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1738 SAMTools SNP 176342 176342 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1738 SAMTools SNP 181794 181794 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1738 SAMTools SNP 181814 181814 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold1738 SAMTools SNP 185484 185484 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1738 SAMTools SNP 200604 200604 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1738 SAMTools SNP 203563 203563 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C42%2C0:81 scaffold1738 SAMTools SNP 203830 203830 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C204:59 scaffold1738 SAMTools SNP 204002 204002 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.9e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C110:39 scaffold1738 SAMTools SNP 204291 204291 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.5e-13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1738 SAMTools SNP 204535 204535 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C3%2C31%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.65%2C5.8e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1738 SAMTools SNP 204613 204613 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C22:25 scaffold1738 SAMTools SNP 205793 205793 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold1738 SAMTools SNP 214053 214053 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C76:51 scaffold174 SAMTools SNP 52905 52905 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold174 SAMTools SNP 52931 52931 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold174 SAMTools SNP 169669 169669 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold174 SAMTools SNP 171008 171008 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold174 SAMTools SNP 171009 171009 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C71:74 scaffold174 SAMTools SNP 171047 171047 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1740 SAMTools SNP 3004 3004 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1740 SAMTools SNP 3042 3042 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1740 SAMTools SNP 3179 3179 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1740 SAMTools SNP 9875 9875 101 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C45%2C0:87 scaffold1740 SAMTools SNP 13154 13154 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1740 SAMTools SNP 13360 13360 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1740 SAMTools SNP 13761 13761 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C28%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C123%2C0:99 scaffold1740 SAMTools SNP 28935 28935 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1740 SAMTools SNP 60205 60205 39.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1740 SAMTools SNP 124124 124124 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1740 SAMTools SNP 124351 124351 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1740 SAMTools SNP 140214 140214 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1740 SAMTools SNP 140220 140220 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1740 SAMTools SNP 140290 140290 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1740 SAMTools SNP 140657 140657 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1740 SAMTools SNP 141521 141521 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1740 SAMTools SNP 149475 149475 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1740 SAMTools SNP 184916 184916 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C71%2C18%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1740 SAMTools SNP 185112 185112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C34%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1740 SAMTools SNP 185423 185423 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1740 SAMTools SNP 189826 189826 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1740 SAMTools SNP 191218 191218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C51%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1740 SAMTools SNP 191412 191412 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1740 SAMTools SNP 195742 195742 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1740 SAMTools SNP 208815 208815 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C5%2C1%2C0%3BMQ%3D19%3BFQ%3D-27%3BPV4%3D0.29%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:29%2C0%2C0:7 scaffold1740 SAMTools SNP 237249 237249 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1740 SAMTools SNP 277196 277196 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0082%2C3.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C210:43 scaffold1740 SAMTools SNP 277574 277574 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C123:31 scaffold1740 SAMTools SNP 285194 285194 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1741 SAMTools SNP 18977 18977 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 19086 19086 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 84456 84456 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1741 SAMTools SNP 90471 90471 41.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold1741 SAMTools SNP 110728 110728 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.00041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold1741 SAMTools SNP 111839 111839 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 111869 111869 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 142301 142301 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1741 SAMTools SNP 154801 154801 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C196%2C0:99 scaffold1741 SAMTools SNP 197568 197568 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1741 SAMTools SNP 197610 197610 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1741 SAMTools SNP 198097 198097 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C51%2C51%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1.9e-25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 198154 198154 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C77%2C24%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C3.4e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 198217 198217 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C69%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.06%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 199493 199493 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1741 SAMTools SNP 217509 217509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 217524 217524 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 218558 218558 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 218568 218568 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 218666 218666 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1741 SAMTools SNP 220678 220678 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1741 SAMTools SNP 220680 220680 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1741 SAMTools SNP 220714 220714 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1741 SAMTools SNP 220731 220731 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1741 SAMTools SNP 220742 220742 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1741 SAMTools SNP 224992 224992 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C45%2C0:87 scaffold1741 SAMTools SNP 225037 225037 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.014%2C9e-05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1741 SAMTools SNP 226995 226995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1741 SAMTools SNP 227346 227346 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1741 SAMTools SNP 230530 230530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1741 SAMTools SNP 230609 230609 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C1%2C9%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1741 SAMTools SNP 239855 239855 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1741 SAMTools SNP 239876 239876 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 240061 240061 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 240094 240094 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 244108 244108 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 244110 244110 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1741 SAMTools SNP 244533 244533 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1741 SAMTools SNP 247768 247768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C8%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1741 SAMTools SNP 247840 247840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 247998 247998 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C18%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1741 SAMTools SNP 248021 248021 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C40%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1741 SAMTools SNP 248839 248839 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C2%2C48%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1741 SAMTools SNP 248866 248866 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C1%2C40%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1741 SAMTools SNP 248944 248944 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C57%2C33%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 248959 248959 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C131%2C13%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 248993 248993 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1741 SAMTools SNP 249499 249499 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C70%2C74%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 249688 249688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C85%2C13%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.0085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 249745 249745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 249748 249748 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C40%2C9%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.028%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1741 SAMTools SNP 250271 250271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C14%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1741 SAMTools SNP 250295 250295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C65%2C32%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 250577 250577 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 250586 250586 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C52%2C17%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.2%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 252690 252690 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C35%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 252700 252700 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C12%2C15%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.01%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1741 SAMTools SNP 252756 252756 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C52%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 252759 252759 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C28%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 253256 253256 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C28%2C2%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-08%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 253652 253652 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 253655 253655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 254028 254028 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1741 SAMTools SNP 254373 254373 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1741 SAMTools SNP 258098 258098 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 259482 259482 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.00058%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1741 SAMTools SNP 259494 259494 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1741 SAMTools SNP 259560 259560 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C14%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1741 SAMTools SNP 259608 259608 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C4%2C31%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 260348 260348 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C165:99 scaffold1741 SAMTools SNP 260354 260354 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1741 SAMTools SNP 260465 260465 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C66%2C2%2C13%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.22%2C0.064%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1741 SAMTools SNP 260510 260510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C77%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1741 SAMTools SNP 261000 261000 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1741 SAMTools SNP 261027 261027 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C26%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold1741 SAMTools SNP 261065 261065 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 262097 262097 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1741 SAMTools SNP 262259 262259 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1741 SAMTools SNP 262370 262370 62.3 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C3%2C87%2C0%2C84:27 scaffold1741 SAMTools SNP 342708 342708 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1741 SAMTools SNP 343082 343082 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1741 SAMTools SNP 343900 343900 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1741 SAMTools SNP 366811 366811 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D50.9%3BPV4%3D1%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C93:81 scaffold1741 SAMTools SNP 367474 367474 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C12%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.22%2C7.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1741 SAMTools SNP 384416 384416 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 384432 384432 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 388628 388628 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 389109 389109 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 389183 389183 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold1741 SAMTools SNP 396253 396253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1741 SAMTools SNP 400166 400166 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 400210 400210 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1741 SAMTools SNP 401947 401947 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1741 SAMTools SNP 401974 401974 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C247:99 scaffold1741 SAMTools SNP 404275 404275 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1741 SAMTools SNP 404318 404318 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.18%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C246:99 scaffold1741 SAMTools SNP 406018 406018 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1741 SAMTools SNP 406021 406021 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1741 SAMTools SNP 406042 406042 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.47%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1741 SAMTools SNP 406464 406464 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 406920 406920 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1741 SAMTools SNP 407066 407066 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C8%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1741 SAMTools SNP 408982 408982 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C1%2C22%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.35%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1741 SAMTools SNP 409012 409012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C1%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.36%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1741 SAMTools SNP 420789 420789 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.44%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1741 SAMTools SNP 420800 420800 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1741 SAMTools SNP 422878 422878 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1741 SAMTools SNP 435454 435454 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C48%2C0:77 scaffold1741 SAMTools SNP 436043 436043 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 436072 436072 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 436954 436954 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 436978 436978 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1741 SAMTools SNP 437258 437258 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold1741 SAMTools SNP 439521 439521 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold1741 SAMTools SNP 439566 439566 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.27%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C155:36 scaffold1741 SAMTools SNP 439788 439788 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 439848 439848 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1741 SAMTools SNP 441755 441755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1741 SAMTools SNP 442389 442389 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 443412 443412 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 444137 444137 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C169:99 scaffold1741 SAMTools SNP 444160 444160 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.045%2C0.12%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C188:99 scaffold1741 SAMTools SNP 459963 459963 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1741 SAMTools SNP 460354 460354 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1741 SAMTools SNP 460817 460817 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 460822 460822 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 462919 462919 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 462943 462943 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 462954 462954 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 463623 463623 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 464172 464172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1741 SAMTools SNP 464235 464235 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1741 SAMTools SNP 466525 466525 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold1741 SAMTools SNP 466607 466607 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.62%2C1.7e-16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C245:99 scaffold1741 SAMTools SNP 466704 466704 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C81%2C0:99 scaffold1741 SAMTools SNP 468514 468514 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1741 SAMTools SNP 468531 468531 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 468543 468543 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 477867 477867 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 479731 479731 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 480293 480293 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 480485 480485 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1741 SAMTools SNP 480506 480506 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1741 SAMTools SNP 481687 481687 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 481690 481690 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 482106 482106 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1741 SAMTools SNP 482287 482287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 482315 482315 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1741 SAMTools SNP 500099 500099 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1741 SAMTools SNP 500181 500181 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1741 SAMTools SNP 509464 509464 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 509817 509817 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C3%2C0:6 scaffold1741 SAMTools SNP 510698 510698 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.23%2C0.33%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1741 SAMTools SNP 510704 510704 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1741 SAMTools SNP 510859 510859 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1741 SAMTools SNP 511456 511456 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1741 SAMTools SNP 511471 511471 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1741 SAMTools SNP 517487 517487 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1741 SAMTools SNP 522958 522958 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C180:99 scaffold1741 SAMTools SNP 525960 525960 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1741 SAMTools SNP 528691 528691 58.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1741 SAMTools SNP 528865 528865 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1741 SAMTools SNP 530060 530060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 530069 530069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 533270 533270 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1741 SAMTools SNP 536919 536919 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1741 SAMTools SNP 536925 536925 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1741 SAMTools SNP 536961 536961 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1741 SAMTools SNP 537620 537620 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.5%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1741 SAMTools SNP 537803 537803 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1741 SAMTools SNP 540037 540037 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C3%3BMQ%3D48%3BFQ%3D165%3BPV4%3D0.59%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C213:99 scaffold1741 SAMTools SNP 540341 540341 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D1%2C0.071%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C182:34 scaffold1741 SAMTools SNP 540353 540353 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D33%3BPV4%3D1%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold1741 SAMTools SNP 540361 540361 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D47%3BFQ%3D116%3BPV4%3D1%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C143:99 scaffold1741 SAMTools SNP 540970 540970 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1741 SAMTools SNP 542363 542363 78.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold1741 SAMTools SNP 545504 545504 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.034%2C2.2e-23%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C166:99 scaffold1741 SAMTools SNP 555334 555334 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1741 SAMTools SNP 558586 558586 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1741 SAMTools SNP 569989 569989 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 570454 570454 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 571307 571307 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 572017 572017 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1741 SAMTools SNP 572808 572808 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1741 SAMTools SNP 572823 572823 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1741 SAMTools SNP 572958 572958 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.31%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C32:35 scaffold1741 SAMTools SNP 573005 573005 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1741 SAMTools SNP 573198 573198 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1741 SAMTools SNP 573230 573230 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1741 SAMTools SNP 575612 575612 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C232:99 scaffold1741 SAMTools SNP 579778 579778 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1741 SAMTools SNP 579865 579865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1741 SAMTools SNP 580434 580434 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1741 SAMTools SNP 580482 580482 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1741 SAMTools SNP 581045 581045 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C21%2C0:39 scaffold1741 SAMTools SNP 585483 585483 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1741 SAMTools SNP 585489 585489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1741 SAMTools SNP 586489 586489 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.8e-10%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C99:61 scaffold1741 SAMTools SNP 586569 586569 25.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold1741 SAMTools SNP 586623 586623 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C36%2C0:69 scaffold1741 SAMTools SNP 586841 586841 11.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1741 SAMTools SNP 587113 587113 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 587180 587180 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C230:93 scaffold1741 SAMTools SNP 590653 590653 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold1741 SAMTools SNP 593428 593428 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1741 SAMTools SNP 595474 595474 46.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1741 SAMTools SNP 595578 595578 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C4.5e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C145:99 scaffold1741 SAMTools SNP 595655 595655 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.27%2C0.28%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1741 SAMTools SNP 601100 601100 35.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold1741 SAMTools SNP 602856 602856 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C96%2C0:99 scaffold1741 SAMTools SNP 604271 604271 23.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1741 SAMTools SNP 604607 604607 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1.6e-08%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C118:99 scaffold1741 SAMTools SNP 604817 604817 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.3%2C0.038%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1741 SAMTools SNP 605916 605916 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C69%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D4.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C158:99 scaffold1741 SAMTools SNP 606464 606464 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C248:70 scaffold1741 SAMTools SNP 606927 606927 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C16%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C5.8e-24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C208:76 scaffold1741 SAMTools SNP 607759 607759 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold1741 SAMTools SNP 608693 608693 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.49%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C219:30 scaffold1741 SAMTools SNP 608713 608713 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold1741 SAMTools SNP 609000 609000 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1741 SAMTools SNP 610905 610905 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C81%2C0:99 scaffold1741 SAMTools SNP 611258 611258 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C13%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.19%2C2.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1741 SAMTools SNP 611870 611870 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 611999 611999 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1741 SAMTools SNP 612274 612274 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C27%2C0:51 scaffold1741 SAMTools SNP 612647 612647 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.053%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1741 SAMTools SNP 612648 612648 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.056%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1741 SAMTools SNP 612673 612673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 612928 612928 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C6%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.041%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1741 SAMTools SNP 613517 613517 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.2%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C217:97 scaffold1741 SAMTools SNP 624536 624536 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1741 SAMTools SNP 677361 677361 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.018%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1741 SAMTools SNP 677406 677406 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 677414 677414 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1741 SAMTools SNP 681390 681390 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 681562 681562 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1741 SAMTools SNP 687370 687370 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1741 SAMTools SNP 688185 688185 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1741 SAMTools SNP 698079 698079 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1741 SAMTools SNP 707712 707712 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1741 SAMTools SNP 709141 709141 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1741 SAMTools SNP 786746 786746 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 787129 787129 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 792876 792876 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1741 SAMTools SNP 792879 792879 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1741 SAMTools SNP 792897 792897 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1741 SAMTools SNP 794370 794370 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1741 SAMTools SNP 794379 794379 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 794472 794472 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 794678 794678 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1741 SAMTools SNP 794717 794717 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 794855 794855 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1741 SAMTools SNP 795158 795158 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1741 SAMTools SNP 797550 797550 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1741 SAMTools SNP 797676 797676 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 797679 797679 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 799464 799464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 799660 799660 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1741 SAMTools SNP 799986 799986 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1741 SAMTools SNP 800033 800033 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1741 SAMTools SNP 801694 801694 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 801784 801784 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 802182 802182 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1741 SAMTools SNP 804294 804294 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C48%2C0:67 scaffold1741 SAMTools SNP 804306 804306 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C54%2C0:94 scaffold1741 SAMTools SNP 804518 804518 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C123%2C0:99 scaffold1741 SAMTools SNP 804545 804545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1741 SAMTools SNP 804551 804551 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C15%2C13%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.29%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1741 SAMTools SNP 804578 804578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D514%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C493%2C15%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.38%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 804888 804888 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C365%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 805168 805168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C212%2C0%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 805175 805175 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C137%2C0%2C173%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1741 SAMTools SNP 809341 809341 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1741 SAMTools SNP 809487 809487 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 809621 809621 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 810704 810704 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1741 SAMTools SNP 810998 810998 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C22%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C120%2C0:99 scaffold1741 SAMTools SNP 811080 811080 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 811103 811103 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1741 SAMTools SNP 813184 813184 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1741 SAMTools SNP 813698 813698 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1741 SAMTools SNP 813865 813865 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1741 SAMTools SNP 814461 814461 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1741 SAMTools SNP 817853 817853 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1741 SAMTools SNP 818327 818327 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1741 SAMTools SNP 818459 818459 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1741 SAMTools SNP 821047 821047 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C71%2C5%3BMQ%3D50%3BFQ%3D-209%3BPV4%3D0.078%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold1741 SAMTools SNP 825553 825553 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C70%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1741 SAMTools SNP 825586 825586 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C50%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1741 SAMTools SNP 828939 828939 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D35%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C26:29 scaffold1741 SAMTools SNP 830493 830493 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 830521 830521 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1741 SAMTools SNP 835486 835486 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold1741 SAMTools SNP 835778 835778 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1741 SAMTools SNP 853533 853533 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C138:44 scaffold1741 SAMTools SNP 894736 894736 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1741 SAMTools SNP 895836 895836 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold1741 SAMTools SNP 895990 895990 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1741 SAMTools SNP 896022 896022 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1741 SAMTools SNP 896107 896107 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold1741 SAMTools SNP 896216 896216 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold1742 SAMTools SNP 88 88 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1742 SAMTools SNP 352 352 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 808 808 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 1857 1857 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C8.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold1742 SAMTools SNP 1923 1923 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1742 SAMTools SNP 6288 6288 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 6808 6808 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C9.9e-16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C235:98 scaffold1742 SAMTools SNP 6838 6838 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 7189 7189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1742 SAMTools SNP 7578 7578 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1742 SAMTools SNP 7663 7663 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1742 SAMTools SNP 7992 7992 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1742 SAMTools SNP 8045 8045 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1742 SAMTools SNP 8465 8465 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1742 SAMTools SNP 8497 8497 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 9052 9052 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 9055 9055 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 9115 9115 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C35:38 scaffold1742 SAMTools SNP 9567 9567 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1742 SAMTools SNP 9777 9777 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1742 SAMTools SNP 11061 11061 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 11070 11070 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 12076 12076 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 12102 12102 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 12115 12115 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold1742 SAMTools SNP 12250 12250 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1742 SAMTools SNP 12510 12510 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1742 SAMTools SNP 12566 12566 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1742 SAMTools SNP 12910 12910 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1742 SAMTools SNP 13513 13513 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 13552 13552 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1742 SAMTools SNP 13567 13567 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 13909 13909 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1742 SAMTools SNP 13942 13942 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1742 SAMTools SNP 14285 14285 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1742 SAMTools SNP 14322 14322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 14582 14582 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1742 SAMTools SNP 16405 16405 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.025%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold1742 SAMTools SNP 16475 16475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1742 SAMTools SNP 17742 17742 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C105%2C0:99 scaffold1742 SAMTools SNP 17824 17824 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold1742 SAMTools SNP 17825 17825 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.045%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C32:35 scaffold1742 SAMTools SNP 18002 18002 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1742 SAMTools SNP 21491 21491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1742 SAMTools SNP 23325 23325 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1742 SAMTools SNP 23331 23331 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold1742 SAMTools SNP 23557 23557 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1742 SAMTools SNP 26394 26394 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 27095 27095 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 28444 28444 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1742 SAMTools SNP 28462 28462 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1742 SAMTools SNP 29058 29058 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1742 SAMTools SNP 29187 29187 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C178:99 scaffold1742 SAMTools SNP 29193 29193 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.0014%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C216:99 scaffold1742 SAMTools SNP 29406 29406 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1742 SAMTools SNP 30520 30520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1742 SAMTools SNP 30743 30743 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.53%2C0.022%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1742 SAMTools SNP 30749 30749 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1742 SAMTools SNP 30752 30752 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1742 SAMTools SNP 30857 30857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C0.15%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1742 SAMTools SNP 31038 31038 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1742 SAMTools SNP 31356 31356 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 31371 31371 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 31691 31691 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 31715 31715 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 31856 31856 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1742 SAMTools SNP 32139 32139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C0.4%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 32388 32388 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C140:85 scaffold1742 SAMTools SNP 32415 32415 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.47%2C0.11%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C166:57 scaffold1742 SAMTools SNP 32481 32481 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1742 SAMTools SNP 32513 32513 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1742 SAMTools SNP 33182 33182 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1742 SAMTools SNP 33458 33458 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1742 SAMTools SNP 33464 33464 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 33780 33780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1742 SAMTools SNP 35168 35168 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1742 SAMTools SNP 35174 35174 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1742 SAMTools SNP 35268 35268 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 35446 35446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1742 SAMTools SNP 35926 35926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.35%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1742 SAMTools SNP 36010 36010 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.31%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1742 SAMTools SNP 36251 36251 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1742 SAMTools SNP 36570 36570 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1742 SAMTools SNP 36572 36572 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1742 SAMTools SNP 36605 36605 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 39055 39055 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1742 SAMTools SNP 39307 39307 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.46%2C2.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1742 SAMTools SNP 39342 39342 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C23:26 scaffold1742 SAMTools SNP 41234 41234 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 41761 41761 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 41767 41767 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1742 SAMTools SNP 43669 43669 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1742 SAMTools SNP 43889 43889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 43943 43943 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.073%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold1742 SAMTools SNP 43961 43961 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold1742 SAMTools SNP 45710 45710 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold1742 SAMTools SNP 45738 45738 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C200:99 scaffold1742 SAMTools SNP 46862 46862 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 53888 53888 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1742 SAMTools SNP 56487 56487 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1742 SAMTools SNP 58309 58309 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 61154 61154 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C41:44 scaffold1742 SAMTools SNP 64997 64997 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1742 SAMTools SNP 65949 65949 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1742 SAMTools SNP 66114 66114 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1742 SAMTools SNP 66144 66144 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1742 SAMTools SNP 66198 66198 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1742 SAMTools SNP 66210 66210 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1742 SAMTools SNP 66380 66380 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold1742 SAMTools SNP 66536 66536 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold1742 SAMTools SNP 66759 66759 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold1742 SAMTools SNP 66813 66813 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1742 SAMTools SNP 66852 66852 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1742 SAMTools SNP 67038 67038 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1742 SAMTools SNP 85999 85999 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1742 SAMTools SNP 86465 86465 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1742 SAMTools SNP 86500 86500 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C211:42 scaffold1742 SAMTools SNP 86556 86556 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0373%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1742 SAMTools SNP 88715 88715 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C36%2C0:69 scaffold1742 SAMTools SNP 88808 88808 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1742 SAMTools SNP 88858 88858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1742 SAMTools SNP 92248 92248 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.1e-10%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C99:72 scaffold1742 SAMTools SNP 93153 93153 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C27%2C0:48 scaffold1742 SAMTools SNP 93642 93642 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D63.9%3BPV4%3D0.53%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C91:94 scaffold1742 SAMTools SNP 93834 93834 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1742 SAMTools SNP 96464 96464 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1742 SAMTools SNP 148267 148267 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C58%2C1%2C22%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.67%2C7e-29%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1742 SAMTools SNP 148511 148511 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C7%2C13%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.3e-14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1742 SAMTools SNP 150051 150051 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C54%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold1742 SAMTools SNP 150562 150562 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 151774 151774 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1742 SAMTools SNP 152833 152833 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C74%2C2%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 153935 153935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1742 SAMTools SNP 154985 154985 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C57%2C0:99 scaffold1742 SAMTools SNP 156425 156425 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 156427 156427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 165546 165546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C125%2C58%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-06%2C7.6e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 166841 166841 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C10%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0092%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1742 SAMTools SNP 166856 166856 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C11%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.26%2C2.7e-17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1742 SAMTools SNP 166910 166910 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C62%2C8%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D3.3e-06%2C1%2C1%2C1.9e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1742 SAMTools SNP 167142 167142 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D207%2C14%2C94%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.29%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1742 SAMTools SNP 167572 167572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1742 SAMTools SNP 169323 169323 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D977%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C453%2C63%2C249%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 169911 169911 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1742 SAMTools SNP 172496 172496 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C48%2C0%3BMQ%3D46%3BFQ%3D-122%3BPV4%3D1%2C4.2e-33%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C95%2C0:99 scaffold1742 SAMTools SNP 173190 173190 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C39%2C0:75 scaffold1742 SAMTools SNP 173250 173250 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D28%2C0%2C1%2C8%3BMQ%3D23%3BFQ%3D-55%3BPV4%3D2.3e-07%2C5.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C28%2C0:27 scaffold1742 SAMTools SNP 173349 173349 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C13%2C1%3BMQ%3D35%3BFQ%3D126%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C180:99 scaffold1742 SAMTools SNP 173486 173486 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C33%2C16%2C0%3BMQ%3D40%3BFQ%3D81%3BPV4%3D0.00089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C181:99 scaffold1742 SAMTools SNP 173561 173561 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D127%3BPV4%3D8.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1742 SAMTools SNP 173576 173576 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1742 SAMTools SNP 173588 173588 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.43%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 174980 174980 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C25%2C34%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C5.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 175158 175158 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C4%2C101%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 175176 175176 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C80%2C31%3BMQ%3D50%3BFQ%3D200%3BPV4%3D2e-07%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1742 SAMTools SNP 176463 176463 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1742 SAMTools SNP 176481 176481 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C126%2C0:99 scaffold1742 SAMTools SNP 176577 176577 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C236:99 scaffold1742 SAMTools SNP 176699 176699 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1742 SAMTools SNP 176885 176885 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C135%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1742 SAMTools SNP 189455 189455 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D48%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1742 SAMTools SNP 192743 192743 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C10%2C21%2C17%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00039%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 193148 193148 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C74%2C5%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 194113 194113 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C1%2C23%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.42%2C0.089%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1742 SAMTools SNP 194128 194128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C17%2C45%3BMQ%3D50%3BFQ%3D-125%3BPV4%3D1%2C0.35%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C98%2C0:99 scaffold1742 SAMTools SNP 198038 198038 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 199093 199093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C46%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.023%2C1%2C9.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 199109 199109 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C46%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1742 SAMTools SNP 199133 199133 208 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C12%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D2e-07%2C0.034%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1742 SAMTools SNP 199229 199229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 199274 199274 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 199555 199555 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1742 SAMTools SNP 199561 199561 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1742 SAMTools SNP 201058 201058 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1742 SAMTools SNP 201309 201309 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1742 SAMTools SNP 201525 201525 44.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1742 SAMTools SNP 202374 202374 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1742 SAMTools SNP 203203 203203 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C79:82 scaffold1742 SAMTools SNP 203255 203255 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1742 SAMTools SNP 204470 204470 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1742 SAMTools SNP 204755 204755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 204896 204896 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.53%2C0.16%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1742 SAMTools SNP 204908 204908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C3%2C11%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.7%2C1.4e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1742 SAMTools SNP 205590 205590 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1742 SAMTools SNP 205616 205616 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 206821 206821 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1742 SAMTools SNP 207529 207529 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C78:31 scaffold1742 SAMTools SNP 209889 209889 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1742 SAMTools SNP 210586 210586 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C72%2C0:99 scaffold1742 SAMTools SNP 214424 214424 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1742 SAMTools SNP 220809 220809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1742 SAMTools SNP 220830 220830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 227981 227981 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1742 SAMTools SNP 227993 227993 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.21%2C0.043%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C95:98 scaffold1742 SAMTools SNP 228038 228038 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C6.4e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1742 SAMTools SNP 228274 228274 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C9%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.61%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold1742 SAMTools SNP 228283 228283 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1742 SAMTools SNP 231631 231631 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1742 SAMTools SNP 231684 231684 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1742 SAMTools SNP 236513 236513 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D3%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C144%2C0:69 scaffold1742 SAMTools SNP 236642 236642 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.23%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C32:35 scaffold1742 SAMTools SNP 236682 236682 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C101:77 scaffold1742 SAMTools SNP 237313 237313 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D47%3BFQ%3D77%3BPV4%3D0.46%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C104:99 scaffold1742 SAMTools SNP 237316 237316 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold1742 SAMTools SNP 239254 239254 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1742 SAMTools SNP 247818 247818 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1742 SAMTools SNP 253882 253882 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C244%2C0:99 scaffold1742 SAMTools SNP 254065 254065 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1742 SAMTools SNP 254068 254068 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1742 SAMTools SNP 254482 254482 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.38%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C231:99 scaffold1742 SAMTools SNP 254488 254488 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1742 SAMTools SNP 254587 254587 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C11%2C82%3BMQ%3D50%3BFQ%3D-220%3BPV4%3D0.24%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1742 SAMTools SNP 254592 254592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1742 SAMTools SNP 255125 255125 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C4%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.17%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1742 SAMTools SNP 255134 255134 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0096%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1742 SAMTools SNP 255934 255934 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C117%2C0:99 scaffold1742 SAMTools SNP 259422 259422 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D44%3BFQ%3D80%3BPV4%3D0.095%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C107:99 scaffold1742 SAMTools SNP 259654 259654 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D40%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C77:80 scaffold1742 SAMTools SNP 276156 276156 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.046%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1742 SAMTools SNP 276246 276246 70.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold1742 SAMTools SNP 276255 276255 99.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold1742 SAMTools SNP 276709 276709 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C15%2C9%2C3%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1742 SAMTools SNP 276923 276923 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C76%2C6%2C13%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1742 SAMTools SNP 277804 277804 39.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1742 SAMTools SNP 278031 278031 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C25%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C111%2C0:99 scaffold1743 SAMTools SNP 960 960 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 1018 1018 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1743 SAMTools SNP 1051 1051 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 3213 3213 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 52303 52303 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1743 SAMTools SNP 57848 57848 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold1743 SAMTools SNP 62134 62134 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 73209 73209 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 73233 73233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 73305 73305 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 73308 73308 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1743 SAMTools SNP 74036 74036 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1743 SAMTools SNP 74057 74057 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C71:71 scaffold1743 SAMTools SNP 75576 75576 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1743 SAMTools SNP 75654 75654 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1743 SAMTools SNP 76128 76128 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 76131 76131 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 76188 76188 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1743 SAMTools SNP 76522 76522 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1743 SAMTools SNP 77345 77345 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.055%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1743 SAMTools SNP 77360 77360 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold1743 SAMTools SNP 77665 77665 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1743 SAMTools SNP 77824 77824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1743 SAMTools SNP 78008 78008 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold1743 SAMTools SNP 78039 78039 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1743 SAMTools SNP 78398 78398 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1743 SAMTools SNP 78419 78419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1743 SAMTools SNP 81221 81221 51.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1743 SAMTools SNP 81768 81768 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1743 SAMTools SNP 81812 81812 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1743 SAMTools SNP 81949 81949 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D31.7%3BPV4%3D0.4%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C70:62 scaffold1743 SAMTools SNP 103528 103528 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1743 SAMTools SNP 137378 137378 29.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1743 SAMTools SNP 141365 141365 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D42%3BFQ%3D11.3%3BPV4%3D0.43%2C1%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C132:40 scaffold1743 SAMTools SNP 141977 141977 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1743 SAMTools SNP 244934 244934 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1743 SAMTools SNP 273830 273830 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1743 SAMTools SNP 275098 275098 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C18%2C0:33 scaffold1743 SAMTools SNP 275107 275107 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C15%2C0:27 scaffold1743 SAMTools SNP 276371 276371 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1743 SAMTools SNP 277115 277115 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1743 SAMTools SNP 277322 277322 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1743 SAMTools SNP 277373 277373 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1745 SAMTools SNP 13904 13904 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1745 SAMTools SNP 35989 35989 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1745 SAMTools SNP 36257 36257 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1745 SAMTools SNP 36392 36392 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1745 SAMTools SNP 43691 43691 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1745 SAMTools SNP 89732 89732 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.12%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C29:32 scaffold1745 SAMTools SNP 90226 90226 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1745 SAMTools SNP 90259 90259 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1746 SAMTools SNP 4436 4436 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1746 SAMTools SNP 4439 4439 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1746 SAMTools SNP 5216 5216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1746 SAMTools SNP 5257 5257 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1746 SAMTools SNP 5324 5324 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C51%2C0:99 scaffold1746 SAMTools SNP 5336 5336 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1746 SAMTools SNP 5390 5390 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1746 SAMTools SNP 6016 6016 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1746 SAMTools SNP 6076 6076 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1746 SAMTools SNP 8058 8058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.084%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 45898 45898 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C8.1e-19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1746 SAMTools SNP 45996 45996 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.083%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1746 SAMTools SNP 49346 49346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1746 SAMTools SNP 49371 49371 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1746 SAMTools SNP 49377 49377 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C214:99 scaffold1746 SAMTools SNP 49386 49386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1746 SAMTools SNP 50567 50567 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.39%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 50575 50575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 54348 54348 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold1746 SAMTools SNP 54452 54452 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C15%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.52%2C1%2C0.41%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 54890 54890 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1746 SAMTools SNP 55269 55269 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1746 SAMTools SNP 61225 61225 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1746 SAMTools SNP 63081 63081 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1746 SAMTools SNP 64414 64414 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D24%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C54%2C0:99 scaffold1746 SAMTools SNP 72776 72776 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C19%2C3%3BMQ%3D41%3BFQ%3D19.1%3BPV4%3D0.14%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C228:49 scaffold1746 SAMTools SNP 72860 72860 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C14%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1746 SAMTools SNP 72878 72878 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 73169 73169 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 77921 77921 68.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold1746 SAMTools SNP 78985 78985 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.016%2C0.26%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1746 SAMTools SNP 79821 79821 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0077%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1746 SAMTools SNP 82863 82863 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.27%2C0.06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1746 SAMTools SNP 82865 82865 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.16%2C3.8e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1746 SAMTools SNP 83850 83850 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1746 SAMTools SNP 84401 84401 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1746 SAMTools SNP 87521 87521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 87560 87560 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1746 SAMTools SNP 87566 87566 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.32%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1746 SAMTools SNP 95233 95233 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold1746 SAMTools SNP 95248 95248 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1746 SAMTools SNP 98811 98811 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C1%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.3%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1746 SAMTools SNP 101076 101076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 101085 101085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 101573 101573 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C19%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 103250 103250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 103875 103875 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C103%2C2%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.32%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C41:44 scaffold1746 SAMTools SNP 104236 104236 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C4%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1746 SAMTools SNP 104944 104944 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C0%2C13%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1746 SAMTools SNP 106201 106201 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C7%2C31%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.00063%2C1%2C5e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 106672 106672 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C15%2C2%3BMQ%3D49%3BFQ%3D69%3BPV4%3D0.73%2C1.6e-07%2C0.0025%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1746 SAMTools SNP 106678 106678 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1746 SAMTools SNP 108536 108536 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D47%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1746 SAMTools SNP 110297 110297 55.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D44%3BFQ%3D-38%3BPV4%3D1%2C0.0034%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C11%2C0:19 scaffold1746 SAMTools SNP 111454 111454 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1746 SAMTools SNP 111861 111861 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1746 SAMTools SNP 112210 112210 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C4%2C78%2C10%3BMQ%3D45%3BFQ%3D58%3BPV4%3D0.16%2C6.2e-84%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1746 SAMTools SNP 116339 116339 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1746 SAMTools SNP 117800 117800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D44%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1746 SAMTools SNP 118823 118823 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C1%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1746 SAMTools SNP 118838 118838 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C42%2C0:81 scaffold1746 SAMTools SNP 118856 118856 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C60%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1746 SAMTools SNP 120626 120626 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1746 SAMTools SNP 151584 151584 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C39%2C0:75 scaffold1746 SAMTools SNP 152149 152149 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0123%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C224:28 scaffold1746 SAMTools SNP 152161 152161 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D46%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1746 SAMTools SNP 152195 152195 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold1746 SAMTools SNP 152547 152547 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1746 SAMTools SNP 152578 152578 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1746 SAMTools SNP 152621 152621 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1746 SAMTools SNP 152946 152946 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1747 SAMTools SNP 71278 71278 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1747 SAMTools SNP 71587 71587 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C7%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1747 SAMTools SNP 73199 73199 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1747 SAMTools SNP 73214 73214 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.3%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1747 SAMTools SNP 75068 75068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1747 SAMTools SNP 76321 76321 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1747 SAMTools SNP 77002 77002 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1747 SAMTools SNP 77008 77008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1747 SAMTools SNP 77794 77794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1747 SAMTools SNP 77809 77809 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1747 SAMTools SNP 84125 84125 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1747 SAMTools SNP 89017 89017 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1747 SAMTools SNP 89727 89727 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1747 SAMTools SNP 91105 91105 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1747 SAMTools SNP 91165 91165 14.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C14:17 scaffold1747 SAMTools SNP 91198 91198 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1747 SAMTools SNP 92296 92296 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1747 SAMTools SNP 92332 92332 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1747 SAMTools SNP 92864 92864 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1749 SAMTools SNP 2624 2624 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 2672 2672 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 2751 2751 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 54781 54781 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 55000 55000 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 112886 112886 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 113472 113472 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 172723 172723 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 172737 172737 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1749 SAMTools SNP 177460 177460 43.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1749 SAMTools SNP 180876 180876 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1749 SAMTools SNP 180933 180933 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1749 SAMTools SNP 181427 181427 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1749 SAMTools SNP 181442 181442 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1749 SAMTools SNP 181836 181836 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1749 SAMTools SNP 182743 182743 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 183427 183427 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1749 SAMTools SNP 183972 183972 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0015%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C138:62 scaffold1749 SAMTools SNP 184669 184669 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C57%2C0:92 scaffold1749 SAMTools SNP 188035 188035 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C29%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.086%2C6.3e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1749 SAMTools SNP 188038 188038 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C25%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.025%2C9.5e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1749 SAMTools SNP 189587 189587 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C40%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1749 SAMTools SNP 194230 194230 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C51%2C3%3BMQ%3D45%3BFQ%3D181%3BPV4%3D2.9e-05%2C0.4%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1749 SAMTools SNP 194359 194359 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C255%2C0:99 scaffold1749 SAMTools SNP 194410 194410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1749 SAMTools SNP 194721 194721 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1749 SAMTools SNP 194745 194745 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1749 SAMTools SNP 194777 194777 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1749 SAMTools SNP 195465 195465 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-38%3BPV4%3D0.0061%2C0.29%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C11%2C0:19 scaffold175 SAMTools SNP 2307 2307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 2824 2824 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold175 SAMTools SNP 3113 3113 91.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C21%2C0:39 scaffold175 SAMTools SNP 3123 3123 78.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold175 SAMTools SNP 3997 3997 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold175 SAMTools SNP 4531 4531 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C12%2C0%3BMQ%3D49%3BFQ%3D34%3BPV4%3D0.0025%2C1.8e-13%2C0.08%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold175 SAMTools SNP 4560 4560 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C0%2C19%3BMQ%3D46%3BFQ%3D116%3BPV4%3D1%2C0.00012%2C0.0061%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold175 SAMTools SNP 4641 4641 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0033%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D43%3BFQ%3D3.55%3BPV4%3D0.37%2C0.25%2C0.3%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C28:31 scaffold175 SAMTools SNP 6568 6568 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold175 SAMTools SNP 6577 6577 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold175 SAMTools SNP 6867 6867 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C60%2C0:99 scaffold175 SAMTools SNP 6958 6958 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C17%2C0%3BMQ%3D44%3BFQ%3D129%3BPV4%3D1%2C0.093%2C7.6e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold175 SAMTools SNP 6980 6980 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D30%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C42%2C0:81 scaffold175 SAMTools SNP 51737 51737 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold175 SAMTools SNP 51935 51935 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 52059 52059 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold175 SAMTools SNP 52106 52106 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold175 SAMTools SNP 52438 52438 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold175 SAMTools SNP 53018 53018 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 53359 53359 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 53379 53379 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 57516 57516 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold175 SAMTools SNP 82073 82073 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold175 SAMTools SNP 82535 82535 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold175 SAMTools SNP 82751 82751 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold175 SAMTools SNP 84248 84248 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold175 SAMTools SNP 86102 86102 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 86391 86391 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold175 SAMTools SNP 86392 86392 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold175 SAMTools SNP 92376 92376 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 93464 93464 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold175 SAMTools SNP 129118 129118 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 129957 129957 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 130510 130510 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold175 SAMTools SNP 142152 142152 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold175 SAMTools SNP 142789 142789 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 148282 148282 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold175 SAMTools SNP 149772 149772 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 150444 150444 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold175 SAMTools SNP 158251 158251 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D5.82%3BPV4%3D1%2C0.027%2C0.33%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold175 SAMTools SNP 158344 158344 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold175 SAMTools SNP 161703 161703 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold175 SAMTools SNP 162007 162007 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 162009 162009 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 162055 162055 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 166170 166170 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.27%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold175 SAMTools SNP 166283 166283 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold175 SAMTools SNP 167211 167211 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold175 SAMTools SNP 172990 172990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold175 SAMTools SNP 175266 175266 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold175 SAMTools SNP 175272 175272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold175 SAMTools SNP 175425 175425 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold175 SAMTools SNP 175485 175485 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold175 SAMTools SNP 175980 175980 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C253:99 scaffold175 SAMTools SNP 176043 176043 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C120%2C0:99 scaffold175 SAMTools SNP 176064 176064 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0012%2C0.009%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold175 SAMTools SNP 176094 176094 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C24%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.4%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold175 SAMTools SNP 176983 176983 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold175 SAMTools SNP 177595 177595 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold175 SAMTools SNP 177664 177664 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold175 SAMTools SNP 177685 177685 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold175 SAMTools SNP 181588 181588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C30%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold175 SAMTools SNP 182096 182096 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C16%2C14%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.34%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold175 SAMTools SNP 182107 182107 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C42%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.61%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold175 SAMTools SNP 182120 182120 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C0%2C8%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.18%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold175 SAMTools SNP 183573 183573 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C146:99 scaffold175 SAMTools SNP 183631 183631 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C16%2C1%3BMQ%3D48%3BFQ%3D194%3BPV4%3D1%2C0.15%2C0.15%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold175 SAMTools SNP 183663 183663 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C1%3BMQ%3D48%3BFQ%3D161%3BPV4%3D0.35%2C0.26%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold175 SAMTools SNP 184276 184276 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C1%3BMQ%3D47%3BFQ%3D81%3BPV4%3D0.58%2C0.0071%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold175 SAMTools SNP 184300 184300 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold175 SAMTools SNP 184651 184651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold175 SAMTools SNP 184657 184657 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold175 SAMTools SNP 184687 184687 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold175 SAMTools SNP 184711 184711 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold175 SAMTools SNP 189037 189037 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C60%2C0:99 scaffold175 SAMTools SNP 189136 189136 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C36%2C0:69 scaffold175 SAMTools SNP 189194 189194 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold175 SAMTools SNP 193048 193048 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold175 SAMTools SNP 193061 193061 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 201020 201020 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold175 SAMTools SNP 206768 206768 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D716%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C208%2C414%3BMQ%3D3%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.48%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C255%2C0:99 scaffold175 SAMTools SNP 241696 241696 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 243190 243190 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold175 SAMTools SNP 249483 249483 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 250258 250258 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold175 SAMTools SNP 250284 250284 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold175 SAMTools SNP 285523 285523 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold175 SAMTools SNP 303104 303104 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C53%2C1%2C26%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.011%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold175 SAMTools SNP 303105 303105 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C54%2C1%2C25%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0034%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold175 SAMTools SNP 305001 305001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C47%2C22%2C49%3BMQ%3D22%3BFQ%3D-49%3BPV4%3D4e-06%2C0.4%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold175 SAMTools SNP 307173 307173 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C202:86 scaffold175 SAMTools SNP 307197 307197 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C234:72 scaffold175 SAMTools SNP 308379 308379 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C1%3BMQ%3D49%3BFQ%3D-70%3BPV4%3D0.063%2C0.4%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold175 SAMTools SNP 308427 308427 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold175 SAMTools SNP 309048 309048 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D48%3BFQ%3D-13.2%3BPV4%3D1%2C0.35%2C0.39%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C14:17 scaffold175 SAMTools SNP 311455 311455 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.026%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold175 SAMTools SNP 311749 311749 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold175 SAMTools SNP 314118 314118 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 314857 314857 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.18%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold175 SAMTools SNP 314878 314878 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold175 SAMTools SNP 315211 315211 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.014%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C29:32 scaffold175 SAMTools SNP 316319 316319 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold175 SAMTools SNP 316324 316324 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C42%2C0:81 scaffold175 SAMTools SNP 319304 319304 227 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold175 SAMTools SNP 320917 320917 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold175 SAMTools SNP 321532 321532 13.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold175 SAMTools SNP 321931 321931 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C15%2C37%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 322383 322383 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold175 SAMTools SNP 324239 324239 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 325221 325221 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C55%2C15%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 325222 325222 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C58%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 325355 325355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C68%2C29%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.17%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 325845 325845 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C63%2C14%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 331071 331071 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 331362 331362 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold175 SAMTools SNP 333603 333603 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C17%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.00054%2C8.1e-40%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold175 SAMTools SNP 334279 334279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 346344 346344 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 346517 346517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 354721 354721 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 354875 354875 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.1e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold175 SAMTools SNP 355638 355638 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C13%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.023%2C1%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold175 SAMTools SNP 355701 355701 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C41%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.071%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 356346 356346 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold175 SAMTools SNP 358289 358289 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 367029 367029 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold175 SAMTools SNP 367056 367056 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C147%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold175 SAMTools SNP 367986 367986 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold175 SAMTools SNP 369234 369234 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C21%2C0:39 scaffold175 SAMTools SNP 369319 369319 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C28%2C55%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.034%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold175 SAMTools SNP 369705 369705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C171%2C136%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold175 SAMTools SNP 370097 370097 120 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D614%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C68%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C205%2C0%2C152%2C186%2C149:99 scaffold175 SAMTools SNP 370130 370130 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D337%2C83%2C105%2C98%3BMQ%3D50%3BFQ%3D24%3BPV4%3D7e-13%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold175 SAMTools SNP 370241 370241 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C132%2C26%2C342%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1.2e-11%2C8e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C171:99 scaffold175 SAMTools SNP 370405 370405 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold175 SAMTools SNP 377388 377388 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold175 SAMTools SNP 378144 378144 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.072%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 380048 380048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 380686 380686 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.67%2C0.14%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold175 SAMTools SNP 385756 385756 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C9.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C104:73 scaffold175 SAMTools SNP 385945 385945 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold175 SAMTools SNP 387429 387429 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold175 SAMTools SNP 396565 396565 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 407362 407362 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold175 SAMTools SNP 407781 407781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold175 SAMTools SNP 407787 407787 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold175 SAMTools SNP 407937 407937 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 407952 407952 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold175 SAMTools SNP 409522 409522 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold175 SAMTools SNP 409841 409841 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 409888 409888 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 409995 409995 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 410014 410014 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 416418 416418 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 416429 416429 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 418985 418985 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold175 SAMTools SNP 418997 418997 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold175 SAMTools SNP 422494 422494 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.057%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C29:32 scaffold175 SAMTools SNP 422813 422813 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 427647 427647 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold175 SAMTools SNP 428185 428185 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold175 SAMTools SNP 428269 428269 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold175 SAMTools SNP 429190 429190 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold175 SAMTools SNP 430630 430630 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold175 SAMTools SNP 430640 430640 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C127:56 scaffold175 SAMTools SNP 430717 430717 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold175 SAMTools SNP 430720 430720 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold175 SAMTools SNP 431177 431177 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold175 SAMTools SNP 431186 431186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold175 SAMTools SNP 431970 431970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold175 SAMTools SNP 433051 433051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D34%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold175 SAMTools SNP 434524 434524 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold175 SAMTools SNP 435901 435901 39.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold175 SAMTools SNP 436577 436577 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold175 SAMTools SNP 436681 436681 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold175 SAMTools SNP 438344 438344 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.5e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C230:40 scaffold175 SAMTools SNP 442452 442452 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C5%2C3%3BMQ%3D44%3BFQ%3D171%3BPV4%3D0.22%2C0.24%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold175 SAMTools SNP 445203 445203 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold175 SAMTools SNP 445248 445248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold175 SAMTools SNP 445516 445516 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.031%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold175 SAMTools SNP 445568 445568 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.0065%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold175 SAMTools SNP 445573 445573 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.015%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold175 SAMTools SNP 446781 446781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 467212 467212 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold175 SAMTools SNP 467290 467290 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold175 SAMTools SNP 467311 467311 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold175 SAMTools SNP 467883 467883 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold175 SAMTools SNP 467910 467910 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold175 SAMTools SNP 471122 471122 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C207:99 scaffold175 SAMTools SNP 471774 471774 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold175 SAMTools SNP 472456 472456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 472525 472525 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 473066 473066 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 473075 473075 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 474030 474030 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 474051 474051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C19%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.19%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold175 SAMTools SNP 481486 481486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C21%2C27%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 481742 481742 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C26%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold175 SAMTools SNP 481771 481771 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold175 SAMTools SNP 481791 481791 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C60%2C0:99 scaffold175 SAMTools SNP 481945 481945 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C36%2C0:69 scaffold175 SAMTools SNP 482383 482383 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold175 SAMTools SNP 483523 483523 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C20%2C25%2C12%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.66%2C5.8e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold175 SAMTools SNP 484050 484050 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold175 SAMTools SNP 484114 484114 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C32:35 scaffold175 SAMTools SNP 484204 484204 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold175 SAMTools SNP 484435 484435 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold175 SAMTools SNP 484678 484678 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold175 SAMTools SNP 484732 484732 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C197:99 scaffold175 SAMTools SNP 485811 485811 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.045%2C0.059%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C211:99 scaffold175 SAMTools SNP 486007 486007 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold175 SAMTools SNP 486579 486579 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold175 SAMTools SNP 486597 486597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold175 SAMTools SNP 486675 486675 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold175 SAMTools SNP 488196 488196 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold175 SAMTools SNP 488594 488594 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold175 SAMTools SNP 495034 495034 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 495058 495058 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 495098 495098 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold175 SAMTools SNP 496683 496683 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold175 SAMTools SNP 497159 497159 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C34:37 scaffold175 SAMTools SNP 497189 497189 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold175 SAMTools SNP 497258 497258 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C252:99 scaffold175 SAMTools SNP 498054 498054 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold175 SAMTools SNP 498232 498232 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C10%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold175 SAMTools SNP 498509 498509 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold175 SAMTools SNP 498530 498530 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold175 SAMTools SNP 536246 536246 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C36%2C0:69 scaffold175 SAMTools SNP 536267 536267 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C32%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold175 SAMTools SNP 536321 536321 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C121%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold175 SAMTools SNP 536480 536480 67.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C0:39 scaffold175 SAMTools SNP 536539 536539 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold175 SAMTools SNP 536594 536594 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold175 SAMTools SNP 536997 536997 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 538889 538889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 538912 538912 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 548447 548447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold175 SAMTools SNP 548461 548461 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold175 SAMTools SNP 548541 548541 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold175 SAMTools SNP 548552 548552 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold175 SAMTools SNP 551439 551439 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold175 SAMTools SNP 552216 552216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C35%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold175 SAMTools SNP 552294 552294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold175 SAMTools SNP 552922 552922 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold175 SAMTools SNP 552927 552927 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold175 SAMTools SNP 553109 553109 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C51%2C0:99 scaffold175 SAMTools SNP 567839 567839 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold175 SAMTools SNP 651483 651483 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold175 SAMTools SNP 651816 651816 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold175 SAMTools SNP 652828 652828 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.017%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold175 SAMTools SNP 653156 653156 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C226:61 scaffold175 SAMTools SNP 657664 657664 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold175 SAMTools SNP 657874 657874 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C252:99 scaffold175 SAMTools SNP 657913 657913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 658456 658456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C7%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 659194 659194 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C6%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 659286 659286 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.00025%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold175 SAMTools SNP 659377 659377 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold175 SAMTools SNP 659837 659837 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C13%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 660033 660033 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.31%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold175 SAMTools SNP 660118 660118 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C157%2C0:99 scaffold175 SAMTools SNP 660133 660133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C9%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold175 SAMTools SNP 660328 660328 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C2%2C25%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold175 SAMTools SNP 661488 661488 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.1%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C32:35 scaffold175 SAMTools SNP 661518 661518 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D5.95%3BPV4%3D1%2C2.3e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C32:35 scaffold175 SAMTools SNP 665177 665177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold175 SAMTools SNP 665210 665210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold175 SAMTools SNP 666771 666771 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold175 SAMTools SNP 674265 674265 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.22%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C154:99 scaffold175 SAMTools SNP 674577 674577 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 677019 677019 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C34%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C3.3e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 677057 677057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0076%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 677099 677099 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold175 SAMTools SNP 681701 681701 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C151%2C0:99 scaffold1750 SAMTools SNP 15788 15788 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D1%2C2.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C189:41 scaffold1750 SAMTools SNP 17045 17045 19 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1750 SAMTools SNP 24636 24636 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1750 SAMTools SNP 25235 25235 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1750 SAMTools SNP 25304 25304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1750 SAMTools SNP 25334 25334 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1750 SAMTools SNP 32140 32140 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1750 SAMTools SNP 32573 32573 13.9 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C15%2C44%2C0%2C41:10 scaffold1750 SAMTools SNP 33461 33461 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1750 SAMTools SNP 33548 33548 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1750 SAMTools SNP 35260 35260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1750 SAMTools SNP 35275 35275 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1750 SAMTools SNP 43079 43079 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C30%2C0:57 scaffold1750 SAMTools SNP 43687 43687 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1750 SAMTools SNP 44104 44104 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C13%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.63%2C1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C163:99 scaffold1750 SAMTools SNP 44158 44158 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.52%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C178:55 scaffold1750 SAMTools SNP 44188 44188 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00043%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C32:35 scaffold1750 SAMTools SNP 51320 51320 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1750 SAMTools SNP 51365 51365 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1750 SAMTools SNP 53554 53554 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.054%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C244:54 scaffold1750 SAMTools SNP 53590 53590 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1750 SAMTools SNP 53979 53979 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1750 SAMTools SNP 54051 54051 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1750 SAMTools SNP 54747 54747 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1750 SAMTools SNP 55063 55063 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C2%3BMQ%3D42%3BFQ%3D114%3BPV4%3D0.59%2C0.09%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C187:99 scaffold1750 SAMTools SNP 56135 56135 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold1750 SAMTools SNP 56532 56532 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold1750 SAMTools SNP 56576 56576 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1750 SAMTools SNP 56609 56609 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1750 SAMTools SNP 56633 56633 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1750 SAMTools SNP 56645 56645 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 60411 60411 48.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1750 SAMTools SNP 60431 60431 37.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1750 SAMTools SNP 60731 60731 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C254:34 scaffold1750 SAMTools SNP 60827 60827 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C57%2C0:99 scaffold1750 SAMTools SNP 71401 71401 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold1750 SAMTools SNP 71984 71984 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1750 SAMTools SNP 72714 72714 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.018%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1750 SAMTools SNP 72752 72752 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1750 SAMTools SNP 73153 73153 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold1750 SAMTools SNP 74528 74528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 74561 74561 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 74864 74864 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1750 SAMTools SNP 74969 74969 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1750 SAMTools SNP 75010 75010 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1750 SAMTools SNP 75260 75260 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1750 SAMTools SNP 75284 75284 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C0.22%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold1750 SAMTools SNP 75538 75538 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1750 SAMTools SNP 75587 75587 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 75972 75972 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C142:99 scaffold1750 SAMTools SNP 75999 75999 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold1750 SAMTools SNP 76285 76285 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1750 SAMTools SNP 76331 76331 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 76466 76466 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 76502 76502 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 76729 76729 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 76730 76730 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 76758 76758 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1750 SAMTools SNP 77084 77084 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1750 SAMTools SNP 77095 77095 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.12%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold1750 SAMTools SNP 78639 78639 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 79052 79052 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1750 SAMTools SNP 80029 80029 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1750 SAMTools SNP 80339 80339 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1750 SAMTools SNP 80996 80996 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1750 SAMTools SNP 81414 81414 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1750 SAMTools SNP 81454 81454 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C200:99 scaffold1750 SAMTools SNP 82605 82605 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1750 SAMTools SNP 83862 83862 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C90%2C0:99 scaffold1750 SAMTools SNP 91288 91288 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 91479 91479 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00045%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1750 SAMTools SNP 91866 91866 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.25%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C119:99 scaffold1750 SAMTools SNP 92398 92398 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1750 SAMTools SNP 93577 93577 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1750 SAMTools SNP 93633 93633 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1409%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D796%2C0%2C613%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00069%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 94664 94664 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2292%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C1059%2C62%2C897%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 94688 94688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1605%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C632%2C101%2C811%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1.7e-127%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 94745 94745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D666%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C355%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 95278 95278 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C36%2C137%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 95305 95305 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C33%2C127%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 95373 95373 75.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold1750 SAMTools SNP 97545 97545 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C3.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C244:99 scaffold1750 SAMTools SNP 97689 97689 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C15%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C202:82 scaffold1750 SAMTools SNP 97818 97818 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C39%2C0:75 scaffold1750 SAMTools SNP 99228 99228 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.43%2C0.0056%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C163:40 scaffold1750 SAMTools SNP 99697 99697 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1750 SAMTools SNP 99703 99703 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1750 SAMTools SNP 99744 99744 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1750 SAMTools SNP 99791 99791 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1750 SAMTools SNP 100234 100234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1750 SAMTools SNP 101300 101300 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1750 SAMTools SNP 101408 101408 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C42%2C0:81 scaffold1750 SAMTools SNP 101417 101417 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1750 SAMTools SNP 103567 103567 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 104117 104117 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C24%2C0:45 scaffold1750 SAMTools SNP 105248 105248 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1750 SAMTools SNP 105890 105890 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 105905 105905 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 105966 105966 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 106348 106348 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1750 SAMTools SNP 106351 106351 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 106670 106670 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C123:40 scaffold1750 SAMTools SNP 107050 107050 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 107056 107056 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1750 SAMTools SNP 107521 107521 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 108055 108055 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1750 SAMTools SNP 108058 108058 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1750 SAMTools SNP 108101 108101 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1750 SAMTools SNP 108438 108438 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 108441 108441 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1750 SAMTools SNP 108715 108715 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 109103 109103 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 109180 109180 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 109195 109195 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 109786 109786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 109858 109858 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 110544 110544 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 110920 110920 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.5%2C0.014%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C204:97 scaffold1750 SAMTools SNP 110980 110980 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold1750 SAMTools SNP 111004 111004 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1750 SAMTools SNP 112700 112700 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1750 SAMTools SNP 112830 112830 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 112902 112902 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1750 SAMTools SNP 114129 114129 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1750 SAMTools SNP 114179 114179 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.18%2C0.00025%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1750 SAMTools SNP 114245 114245 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.23%2C1.3e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1750 SAMTools SNP 114291 114291 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1750 SAMTools SNP 114644 114644 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1750 SAMTools SNP 119856 119856 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 120179 120179 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 120446 120446 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1750 SAMTools SNP 120450 120450 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1750 SAMTools SNP 120849 120849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1750 SAMTools SNP 121308 121308 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold1750 SAMTools SNP 121484 121484 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1750 SAMTools SNP 121875 121875 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1750 SAMTools SNP 122099 122099 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1750 SAMTools SNP 122192 122192 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.56%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C212:99 scaffold1750 SAMTools SNP 122346 122346 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold1750 SAMTools SNP 122799 122799 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.53%2C0.0027%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1750 SAMTools SNP 122840 122840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C0.28%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1750 SAMTools SNP 123842 123842 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1750 SAMTools SNP 124117 124117 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1750 SAMTools SNP 124249 124249 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1750 SAMTools SNP 125772 125772 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.25%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1750 SAMTools SNP 125784 125784 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1750 SAMTools SNP 126308 126308 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1750 SAMTools SNP 126326 126326 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 126458 126458 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold1750 SAMTools SNP 126461 126461 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold1750 SAMTools SNP 126971 126971 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1750 SAMTools SNP 127142 127142 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1750 SAMTools SNP 128197 128197 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1750 SAMTools SNP 128627 128627 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.012%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1750 SAMTools SNP 128675 128675 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.37%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1750 SAMTools SNP 128708 128708 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 128774 128774 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 129002 129002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1750 SAMTools SNP 129771 129771 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1750 SAMTools SNP 129792 129792 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1750 SAMTools SNP 130153 130153 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 130315 130315 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1750 SAMTools SNP 130339 130339 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1750 SAMTools SNP 130363 130363 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1750 SAMTools SNP 130501 130501 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 130549 130549 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C37:40 scaffold1750 SAMTools SNP 131004 131004 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1750 SAMTools SNP 131051 131051 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1750 SAMTools SNP 131057 131057 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1750 SAMTools SNP 131082 131082 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1750 SAMTools SNP 131527 131527 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1750 SAMTools SNP 131530 131530 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1750 SAMTools SNP 132178 132178 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 132277 132277 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 132601 132601 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1750 SAMTools SNP 132730 132730 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.048%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1750 SAMTools SNP 133314 133314 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1750 SAMTools SNP 135506 135506 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 135521 135521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 135599 135599 15.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1750 SAMTools SNP 136042 136042 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 136488 136488 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 136497 136497 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1750 SAMTools SNP 137343 137343 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C5%2C2%3BMQ%3D45%3BFQ%3D110%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1750 SAMTools SNP 137411 137411 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C9%3BMQ%3D47%3BFQ%3D17.1%3BPV4%3D0.53%2C3.6e-05%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1750 SAMTools SNP 138111 138111 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1750 SAMTools SNP 138354 138354 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1750 SAMTools SNP 138363 138363 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1750 SAMTools SNP 138419 138419 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.083%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C240:99 scaffold1750 SAMTools SNP 138957 138957 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C249:99 scaffold1750 SAMTools SNP 139086 139086 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.21%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C188:99 scaffold1750 SAMTools SNP 139384 139384 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1750 SAMTools SNP 140322 140322 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1750 SAMTools SNP 140419 140419 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C57%2C0:99 scaffold1750 SAMTools SNP 140476 140476 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1750 SAMTools SNP 140851 140851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1750 SAMTools SNP 140878 140878 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 140914 140914 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1750 SAMTools SNP 140926 140926 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1750 SAMTools SNP 141155 141155 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1750 SAMTools SNP 141834 141834 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1750 SAMTools SNP 141848 141848 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1750 SAMTools SNP 142625 142625 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.22%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1750 SAMTools SNP 142691 142691 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.58%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1750 SAMTools SNP 143003 143003 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1750 SAMTools SNP 143445 143445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 143467 143467 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1750 SAMTools SNP 144985 144985 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.24%2C0.0026%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1750 SAMTools SNP 145459 145459 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1750 SAMTools SNP 145480 145480 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.072%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C173:99 scaffold1750 SAMTools SNP 146050 146050 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C247:99 scaffold1750 SAMTools SNP 146062 146062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 146383 146383 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1750 SAMTools SNP 148422 148422 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1750 SAMTools SNP 156174 156174 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 164974 164974 36.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1750 SAMTools SNP 165097 165097 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1750 SAMTools SNP 165427 165427 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold1750 SAMTools SNP 165591 165591 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.63%2C2.6e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1750 SAMTools SNP 167401 167401 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C4%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 167846 167846 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1750 SAMTools SNP 167939 167939 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1750 SAMTools SNP 167966 167966 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 172296 172296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C2%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1750 SAMTools SNP 175682 175682 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1750 SAMTools SNP 177491 177491 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C30%2C57%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 177500 177500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C34%2C41%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 178253 178253 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C18%2C64%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 179537 179537 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C22%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1750 SAMTools SNP 179792 179792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C39%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 179842 179842 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 180318 180318 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.00097%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold1750 SAMTools SNP 180339 180339 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.022%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold1750 SAMTools SNP 180411 180411 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C7%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1750 SAMTools SNP 183493 183493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C27%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1750 SAMTools SNP 183507 183507 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D0.37%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold1750 SAMTools SNP 183529 183529 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1750 SAMTools SNP 184291 184291 9.49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1750 SAMTools SNP 186200 186200 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1750 SAMTools SNP 186227 186227 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.54%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1750 SAMTools SNP 187369 187369 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1750 SAMTools SNP 188495 188495 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C1%2C47%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.0034%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1750 SAMTools SNP 188501 188501 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C8.1e-06%2C1%2C3.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1750 SAMTools SNP 188561 188561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 189167 189167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C5.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 189282 189282 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.25%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C151:71 scaffold1750 SAMTools SNP 189317 189317 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C66%2C0:99 scaffold1750 SAMTools SNP 189335 189335 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold1750 SAMTools SNP 189461 189461 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C24%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C141%2C0:99 scaffold1750 SAMTools SNP 189618 189618 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1750 SAMTools SNP 192993 192993 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C81%2C0:99 scaffold1750 SAMTools SNP 193329 193329 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.0037%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C9:12 scaffold1750 SAMTools SNP 194214 194214 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C1%2C126%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C5.7e-168%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1750 SAMTools SNP 194269 194269 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.78%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold1750 SAMTools SNP 194610 194610 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C0:57 scaffold1750 SAMTools SNP 194654 194654 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1750 SAMTools SNP 194662 194662 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1750 SAMTools SNP 195195 195195 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C35:38 scaffold1750 SAMTools SNP 196078 196078 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C60%2C0:99 scaffold1750 SAMTools SNP 196276 196276 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C13%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1750 SAMTools SNP 196297 196297 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C12%2C6%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.31%2C8.5e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1750 SAMTools SNP 197350 197350 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C27%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C160%2C0:99 scaffold1750 SAMTools SNP 197368 197368 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C8%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.77%2C5.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1750 SAMTools SNP 197815 197815 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1750 SAMTools SNP 198025 198025 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C3%2C10%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1750 SAMTools SNP 198073 198073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C52%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1750 SAMTools SNP 198078 198078 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C44%2C0%2C17%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.33%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1750 SAMTools SNP 198425 198425 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C56%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 198624 198624 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.097%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 198654 198654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C73%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1750 SAMTools SNP 199120 199120 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C17%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 200496 200496 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C4%3BMQ%3D49%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C241:94 scaffold1750 SAMTools SNP 214222 214222 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.025%2C0.05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1750 SAMTools SNP 217862 217862 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.044%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1750 SAMTools SNP 218188 218188 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1750 SAMTools SNP 220899 220899 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 222492 222492 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C48%2C0:93 scaffold1750 SAMTools SNP 222615 222615 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C34%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.9e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1750 SAMTools SNP 222708 222708 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C53%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C211%2C0:99 scaffold1750 SAMTools SNP 223039 223039 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.29%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1750 SAMTools SNP 223270 223270 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C17%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.073%2C1e-25%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1750 SAMTools SNP 223287 223287 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C37%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0093%2C1.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1750 SAMTools SNP 223435 223435 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C50%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.46%2C7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1750 SAMTools SNP 224250 224250 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C181%2C0:99 scaffold1750 SAMTools SNP 226586 226586 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1750 SAMTools SNP 226946 226946 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1750 SAMTools SNP 227036 227036 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5.7e-12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C119:46 scaffold1750 SAMTools SNP 227648 227648 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1750 SAMTools SNP 228577 228577 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1750 SAMTools SNP 229726 229726 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C9.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C124:69 scaffold1750 SAMTools SNP 230223 230223 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D669%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C577%2C39%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 230646 230646 38 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0%2C66%2C10%2C63:45 scaffold1750 SAMTools SNP 230820 230820 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1750 SAMTools SNP 231144 231144 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C35%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1750 SAMTools SNP 231162 231162 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1750 SAMTools SNP 231186 231186 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C4:7 scaffold1750 SAMTools SNP 231854 231854 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C4%2C38%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1750 SAMTools SNP 232274 232274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C40%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1750 SAMTools SNP 232353 232353 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C6%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1750 SAMTools SNP 232815 232815 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C9%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 233274 233274 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.49%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1750 SAMTools SNP 234360 234360 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1750 SAMTools SNP 234840 234840 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1750 SAMTools SNP 236352 236352 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1750 SAMTools SNP 237253 237253 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1750 SAMTools SNP 244727 244727 58.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1750 SAMTools SNP 245369 245369 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 245376 245376 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 245662 245662 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 246310 246310 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 247131 247131 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.43%2C1.2e-05%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C198:48 scaffold1750 SAMTools SNP 247191 247191 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold1750 SAMTools SNP 247221 247221 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C23%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.54%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1750 SAMTools SNP 249544 249544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.029%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1750 SAMTools SNP 250584 250584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1750 SAMTools SNP 251560 251560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C41%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.061%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 252964 252964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C115%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 253049 253049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1750 SAMTools SNP 253243 253243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1750 SAMTools SNP 253318 253318 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1750 SAMTools SNP 253333 253333 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0037%2C0.02%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1750 SAMTools SNP 253497 253497 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1750 SAMTools SNP 253649 253649 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.29%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1750 SAMTools SNP 253715 253715 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.046%2C0.018%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1750 SAMTools SNP 254576 254576 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C40%2C5%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.097%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1750 SAMTools SNP 254579 254579 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C41%2C5%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1750 SAMTools SNP 257074 257074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C35%2C37%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 257086 257086 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C37%2C39%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 257706 257706 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C35%2C18%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 258840 258840 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C38%2C3%2C18%3BMQ%3D50%3BFQ%3D23%3BPV4%3D5.2e-05%2C2.6e-19%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1750 SAMTools SNP 258964 258964 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D63%2C39%2C0%2C61%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D2.6e-18%2C1.6e-54%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1750 SAMTools SNP 261478 261478 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1750 SAMTools SNP 266188 266188 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D665%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C272%2C13%2C352%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1.1e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 267225 267225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C25%2C5%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.042%2C0.21%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1750 SAMTools SNP 267226 267226 226 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.18%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1750 SAMTools SNP 267327 267327 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D697%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D66%2C0%2C578%2C5%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 267730 267730 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1654%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C73%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1750 SAMTools SNP 267784 267784 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D711%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C167%2C368%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C2.4e-22%2C0.47%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C255%2C0:99 scaffold1750 SAMTools SNP 267807 267807 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 267820 267820 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D795%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C775%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 269242 269242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D953%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C920%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 269361 269361 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1750 SAMTools SNP 269379 269379 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1750 SAMTools SNP 270618 270618 20.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1160%3BVDB%3D0.0013%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C12:15 scaffold1750 SAMTools SNP 270630 270630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1221%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 270692 270692 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1301%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C882%2C419%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 270696 270696 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1301%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D739%2C284%2C143%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-10%2C1%2C1%2C2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 270728 270728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 270770 270770 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 272107 272107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1307%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.43%2C1%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1750 SAMTools SNP 272109 272109 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1402%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C76:40 scaffold1750 SAMTools SNP 272190 272190 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C368%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 274647 274647 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D721%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C610%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 275046 275046 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D789%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D422%2C28%2C258%2C39%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0016%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1750 SAMTools SNP 275055 275055 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D845%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D286%2C87%2C421%2C43%3BMQ%3D50%3BFQ%3D122%3BPV4%3D3e-08%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1750 SAMTools SNP 275099 275099 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D928%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D207%2C322%2C49%2C311%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-17%2C1.5e-288%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 275192 275192 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D636%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C342%2C263%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 275707 275707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C43%3BMQ%3D37%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1750 SAMTools SNP 276706 276706 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D887%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C241%2C225%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-38%2C0.14%2C1%2C8.7e-60;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 276730 276730 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D670%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D341%2C118%2C64%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-09%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 277636 277636 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1013%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C59%3BMQ%3D25%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C235%2C0:99 scaffold1750 SAMTools SNP 277681 277681 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D916%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C533%2C21%2C244%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00093%2C9.4e-12%2C1%2C1.5e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 277690 277690 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1475%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C659%2C322%2C369%3BMQ%3D49%3BFQ%3D225%3BPV4%3D6e-38%2C1%2C1%2C6e-64;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 279033 279033 18.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold1750 SAMTools SNP 279696 279696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C79%2C1%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 294200 294200 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1750 SAMTools SNP 294226 294226 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.45%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C63:66 scaffold1750 SAMTools SNP 295168 295168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold1750 SAMTools SNP 296683 296683 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.14%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold1750 SAMTools SNP 299027 299027 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C62%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C8.4e-63%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1750 SAMTools SNP 299057 299057 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.32%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1750 SAMTools SNP 301007 301007 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1750 SAMTools SNP 314950 314950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1750 SAMTools SNP 315269 315269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1750 SAMTools SNP 315303 315303 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 315350 315350 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1750 SAMTools SNP 315871 315871 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C230:59 scaffold1750 SAMTools SNP 315886 315886 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C229:56 scaffold1750 SAMTools SNP 316165 316165 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.6%2C1.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1750 SAMTools SNP 316627 316627 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C172%2C0:99 scaffold1750 SAMTools SNP 316789 316789 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1750 SAMTools SNP 374360 374360 57.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold1750 SAMTools SNP 374485 374485 80 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C48%2C24%2C105%2C0%2C99:45 scaffold1750 SAMTools SNP 375135 375135 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D0.016%2C1.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C134%2C0:99 scaffold1750 SAMTools SNP 375206 375206 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold1750 SAMTools SNP 379711 379711 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1750 SAMTools SNP 386175 386175 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 386557 386557 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 386574 386574 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 392788 392788 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1750 SAMTools SNP 392789 392789 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1750 SAMTools SNP 408632 408632 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1750 SAMTools SNP 408952 408952 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C33%2C0:63 scaffold1750 SAMTools SNP 409126 409126 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.39%2C4.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1750 SAMTools SNP 409509 409509 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1750 SAMTools SNP 409813 409813 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1750 SAMTools SNP 411081 411081 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold1750 SAMTools SNP 411102 411102 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1750 SAMTools SNP 411140 411140 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold1750 SAMTools SNP 411147 411147 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C93:96 scaffold1750 SAMTools SNP 411712 411712 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C183:99 scaffold1750 SAMTools SNP 412444 412444 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold1750 SAMTools SNP 412839 412839 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1750 SAMTools SNP 412916 412916 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00095%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C60:63 scaffold1750 SAMTools SNP 412953 412953 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold1750 SAMTools SNP 419863 419863 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1750 SAMTools SNP 419963 419963 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 432850 432850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 442620 442620 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1750 SAMTools SNP 442642 442642 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1750 SAMTools SNP 445202 445202 63.8 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold1750 SAMTools SNP 445242 445242 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1750 SAMTools SNP 445300 445300 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1750 SAMTools SNP 447376 447376 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 449187 449187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1750 SAMTools SNP 449199 449199 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0024%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1750 SAMTools SNP 449212 449212 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.081%2C0.00031%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C237:91 scaffold1750 SAMTools SNP 449214 449214 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.061%2C9.5e-06%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C210:99 scaffold1750 SAMTools SNP 453172 453172 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1750 SAMTools SNP 453182 453182 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1750 SAMTools SNP 453536 453536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 457343 457343 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold1750 SAMTools SNP 457394 457394 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C0.35%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C32:35 scaffold1750 SAMTools SNP 457964 457964 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1750 SAMTools SNP 457985 457985 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 458315 458315 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1750 SAMTools SNP 458387 458387 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C18%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1750 SAMTools SNP 458793 458793 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.095%2C0.044%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1750 SAMTools SNP 458952 458952 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.58%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1750 SAMTools SNP 459011 459011 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0077%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1750 SAMTools SNP 459473 459473 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1750 SAMTools SNP 459931 459931 85.1 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C137%2C219%2C0%2C195:33 scaffold1750 SAMTools SNP 460638 460638 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C186:99 scaffold1750 SAMTools SNP 461076 461076 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1750 SAMTools SNP 461087 461087 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1750 SAMTools SNP 461213 461213 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1750 SAMTools SNP 465407 465407 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 465425 465425 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 465886 465886 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1750 SAMTools SNP 466787 466787 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 467387 467387 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold1750 SAMTools SNP 467399 467399 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.45%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C175:99 scaffold1750 SAMTools SNP 467417 467417 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1750 SAMTools SNP 467444 467444 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1750 SAMTools SNP 475869 475869 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold1750 SAMTools SNP 483227 483227 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1750 SAMTools SNP 487418 487418 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 499818 499818 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C175%2C0:99 scaffold1750 SAMTools SNP 505339 505339 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold1750 SAMTools SNP 540210 540210 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1750 SAMTools SNP 547502 547502 57.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold1750 SAMTools SNP 547515 547515 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1750 SAMTools SNP 547666 547666 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0041%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold1750 SAMTools SNP 573312 573312 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1750 SAMTools SNP 573527 573527 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 573533 573533 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1750 SAMTools SNP 574716 574716 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1750 SAMTools SNP 574743 574743 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C8%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold1750 SAMTools SNP 574793 574793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1750 SAMTools SNP 583392 583392 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1750 SAMTools SNP 620444 620444 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C2.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C142:99 scaffold1750 SAMTools SNP 621049 621049 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1750 SAMTools SNP 623718 623718 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1751 SAMTools SNP 2034 2034 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1751 SAMTools SNP 3289 3289 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C19%2C0%3BMQ%3D34%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C122:99 scaffold1751 SAMTools SNP 3322 3322 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C16%2C1%3BMQ%3D41%3BFQ%3D97%3BPV4%3D1%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C124:99 scaffold1751 SAMTools SNP 3358 3358 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1751 SAMTools SNP 5117 5117 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1751 SAMTools SNP 7704 7704 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1751 SAMTools SNP 10632 10632 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 10643 10643 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 12426 12426 58.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1751 SAMTools SNP 72703 72703 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C18%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C232%2C0:99 scaffold1751 SAMTools SNP 72799 72799 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C6.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C51:54 scaffold1751 SAMTools SNP 72943 72943 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1751 SAMTools SNP 73072 73072 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold1751 SAMTools SNP 73255 73255 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1751 SAMTools SNP 103796 103796 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1751 SAMTools SNP 130012 130012 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D43.8%3BPV4%3D1%2C0.00048%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C71:74 scaffold1751 SAMTools SNP 132256 132256 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1751 SAMTools SNP 135038 135038 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold1751 SAMTools SNP 135039 135039 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.079%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold1751 SAMTools SNP 135477 135477 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 135504 135504 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.52%2C0.00059%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C221:80 scaffold1751 SAMTools SNP 135564 135564 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.041%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C138:99 scaffold1751 SAMTools SNP 135784 135784 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1751 SAMTools SNP 136493 136493 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 136757 136757 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C248:99 scaffold1751 SAMTools SNP 136770 136770 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C247:99 scaffold1751 SAMTools SNP 137896 137896 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1751 SAMTools SNP 137929 137929 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1751 SAMTools SNP 139304 139304 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1751 SAMTools SNP 139326 139326 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1751 SAMTools SNP 139347 139347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1751 SAMTools SNP 139708 139708 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C63:66 scaffold1751 SAMTools SNP 140415 140415 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C15%2C0:27 scaffold1751 SAMTools SNP 140565 140565 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 140574 140574 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 142275 142275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1751 SAMTools SNP 142394 142394 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C237:94 scaffold1751 SAMTools SNP 142589 142589 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.0076%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 142634 142634 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C25%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1751 SAMTools SNP 142851 142851 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 142893 142893 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 143130 143130 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.65%2C0.06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1751 SAMTools SNP 143217 143217 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.033%2C1.8e-05%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1751 SAMTools SNP 143987 143987 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1751 SAMTools SNP 146698 146698 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 147160 147160 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C162:99 scaffold1751 SAMTools SNP 148355 148355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 151632 151632 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 151638 151638 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 152078 152078 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1751 SAMTools SNP 152662 152662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C12%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.028%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1751 SAMTools SNP 152755 152755 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.14%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1751 SAMTools SNP 152761 152761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.26%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold1751 SAMTools SNP 152767 152767 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1751 SAMTools SNP 153132 153132 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1751 SAMTools SNP 153393 153393 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1751 SAMTools SNP 155019 155019 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold1751 SAMTools SNP 160402 160402 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1751 SAMTools SNP 160460 160460 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold1751 SAMTools SNP 160933 160933 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1751 SAMTools SNP 161014 161014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1751 SAMTools SNP 161029 161029 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1751 SAMTools SNP 162758 162758 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C24%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1751 SAMTools SNP 162785 162785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1751 SAMTools SNP 163037 163037 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1751 SAMTools SNP 163049 163049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1751 SAMTools SNP 163449 163449 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1751 SAMTools SNP 163494 163494 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1751 SAMTools SNP 163791 163791 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1751 SAMTools SNP 164208 164208 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1751 SAMTools SNP 165819 165819 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1751 SAMTools SNP 165858 165858 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1751 SAMTools SNP 166670 166670 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1751 SAMTools SNP 167920 167920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 167950 167950 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1751 SAMTools SNP 168400 168400 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1751 SAMTools SNP 168681 168681 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C13%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C3.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C135:81 scaffold1751 SAMTools SNP 169415 169415 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1751 SAMTools SNP 169858 169858 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1751 SAMTools SNP 180246 180246 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1751 SAMTools SNP 181841 181841 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 181860 181860 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1751 SAMTools SNP 184145 184145 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1751 SAMTools SNP 190223 190223 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1751 SAMTools SNP 190285 190285 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1751 SAMTools SNP 191522 191522 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C30%2C0:57 scaffold1751 SAMTools SNP 191555 191555 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C1%2C15%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1751 SAMTools SNP 192023 192023 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.27%2C0.38%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1751 SAMTools SNP 192062 192062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1751 SAMTools SNP 192110 192110 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1751 SAMTools SNP 192329 192329 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 192556 192556 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1751 SAMTools SNP 192582 192582 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C4%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.72%2C1.1e-09%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1751 SAMTools SNP 192636 192636 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C72%2C0:99 scaffold1751 SAMTools SNP 193072 193072 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.68%2C1.4e-08%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1751 SAMTools SNP 193300 193300 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1751 SAMTools SNP 194188 194188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C15%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C2.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 194599 194599 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C43%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C193%2C0:99 scaffold1751 SAMTools SNP 195341 195341 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0079%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1751 SAMTools SNP 195623 195623 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1751 SAMTools SNP 196013 196013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C59%2C2%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 196062 196062 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C99%2C0%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 196241 196241 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 202671 202671 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1751 SAMTools SNP 203934 203934 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1751 SAMTools SNP 206728 206728 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1751 SAMTools SNP 206973 206973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1751 SAMTools SNP 207377 207377 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0024%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1751 SAMTools SNP 208033 208033 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.47%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C223:99 scaffold1751 SAMTools SNP 208547 208547 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.071%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold1751 SAMTools SNP 208621 208621 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1751 SAMTools SNP 208971 208971 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1751 SAMTools SNP 208993 208993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1751 SAMTools SNP 208999 208999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 210291 210291 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1751 SAMTools SNP 210324 210324 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1751 SAMTools SNP 210744 210744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1751 SAMTools SNP 211141 211141 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1751 SAMTools SNP 211644 211644 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1751 SAMTools SNP 211671 211671 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold1751 SAMTools SNP 212541 212541 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1751 SAMTools SNP 212789 212789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 213223 213223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 213485 213485 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1751 SAMTools SNP 213548 213548 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 213614 213614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.46%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 213632 213632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 213814 213814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1751 SAMTools SNP 213832 213832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1751 SAMTools SNP 214244 214244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1751 SAMTools SNP 214310 214310 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1751 SAMTools SNP 214682 214682 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1751 SAMTools SNP 214706 214706 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1751 SAMTools SNP 214826 214826 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1751 SAMTools SNP 215112 215112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1751 SAMTools SNP 237626 237626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1751 SAMTools SNP 238623 238623 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1751 SAMTools SNP 242011 242011 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1751 SAMTools SNP 242026 242026 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1751 SAMTools SNP 242169 242169 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.43%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C136:99 scaffold1751 SAMTools SNP 242416 242416 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1751 SAMTools SNP 242716 242716 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1751 SAMTools SNP 243554 243554 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1751 SAMTools SNP 243931 243931 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold1751 SAMTools SNP 243946 243946 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1751 SAMTools SNP 243970 243970 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1751 SAMTools SNP 243979 243979 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1751 SAMTools SNP 244507 244507 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1751 SAMTools SNP 246239 246239 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1751 SAMTools SNP 246413 246413 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1751 SAMTools SNP 246880 246880 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00013%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1751 SAMTools SNP 247392 247392 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C39%2C0:75 scaffold1751 SAMTools SNP 247672 247672 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C24%2C0:45 scaffold1751 SAMTools SNP 249268 249268 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1751 SAMTools SNP 249484 249484 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold1752 SAMTools SNP 1635 1635 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1752 SAMTools SNP 2748 2748 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C7%2C0%3BMQ%3D49%3BFQ%3D66%3BPV4%3D0.12%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1752 SAMTools SNP 2755 2755 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C4%2C0%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.27%2C0.074%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1752 SAMTools SNP 2821 2821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D37%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1752 SAMTools SNP 2836 2836 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C0%2C9%3BMQ%3D40%3BFQ%3D129%3BPV4%3D3.7e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C204:99 scaffold1752 SAMTools SNP 3143 3143 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D37%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1752 SAMTools SNP 3191 3191 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C0%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1752 SAMTools SNP 3360 3360 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold1752 SAMTools SNP 3717 3717 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C216:57 scaffold1752 SAMTools SNP 4770 4770 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D880%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C86%2C259%2C180%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 4816 4816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D848%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D381%2C16%2C311%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.55%2C0.0041%2C0.078%2C1.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 5269 5269 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1347%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D367%2C230%2C359%2C383%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-06%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 5326 5326 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D924%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C311%2C116%2C319%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0081%2C0.38%2C1%2C1.3e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 5753 5753 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1070%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D393%2C373%2C145%2C103%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.057%2C8.5e-259%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1752 SAMTools SNP 5786 5786 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1572%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C872%2C0%2C528%3BMQ%3D50%3BFQ%3D149%3BPV4%3D4e-33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1752 SAMTools SNP 6152 6152 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C153%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1752 SAMTools SNP 6189 6189 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C229:48 scaffold1752 SAMTools SNP 6192 6192 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1752 SAMTools SNP 8787 8787 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1752 SAMTools SNP 8835 8835 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1752 SAMTools SNP 9832 9832 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1752 SAMTools SNP 10651 10651 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1752 SAMTools SNP 16120 16120 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1752 SAMTools SNP 16123 16123 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold1752 SAMTools SNP 16153 16153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1752 SAMTools SNP 17037 17037 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.38%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C230:99 scaffold1752 SAMTools SNP 17064 17064 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1752 SAMTools SNP 18366 18366 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1752 SAMTools SNP 18792 18792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C143%2C103%2C187%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 18817 18817 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C165%2C67%2C188%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 18853 18853 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C184%2C3%2C97%3BMQ%3D50%3BFQ%3D145%3BPV4%3D6.3e-07%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1752 SAMTools SNP 20358 20358 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1752 SAMTools SNP 20417 20417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C113%2C1%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1752 SAMTools SNP 30582 30582 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1752 SAMTools SNP 34029 34029 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1752 SAMTools SNP 34054 34054 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0010%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1752 SAMTools SNP 59928 59928 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1752 SAMTools SNP 60377 60377 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C207:99 scaffold1752 SAMTools SNP 67437 67437 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.033%2C0.0039%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold1752 SAMTools SNP 72254 72254 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1752 SAMTools SNP 72484 72484 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1752 SAMTools SNP 72485 72485 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1752 SAMTools SNP 72504 72504 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1753 SAMTools SNP 297 297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 344 344 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 463 463 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 471 471 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 4201 4201 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 4228 4228 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 9413 9413 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1753 SAMTools SNP 9424 9424 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1753 SAMTools SNP 9778 9778 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.048%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C86:55 scaffold1753 SAMTools SNP 10499 10499 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C59%2C0%2C52%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1753 SAMTools SNP 106493 106493 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0119%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold1753 SAMTools SNP 109442 109442 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C187:99 scaffold1753 SAMTools SNP 109768 109768 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1753 SAMTools SNP 110798 110798 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C4%3BMQ%3D42%3BFQ%3D6.2%3BPV4%3D0.56%2C1%2C0.00015%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1753 SAMTools SNP 111575 111575 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C1%3BMQ%3D44%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1753 SAMTools SNP 112017 112017 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C4%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1753 SAMTools SNP 112049 112049 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C47%2C1%2C14%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1753 SAMTools SNP 112062 112062 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C50%2C1%2C14%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1753 SAMTools SNP 113865 113865 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C9%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C225:99 scaffold1753 SAMTools SNP 113895 113895 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C243:99 scaffold1753 SAMTools SNP 153507 153507 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1753 SAMTools SNP 162986 162986 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1753 SAMTools SNP 171532 171532 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 187306 187306 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 214388 214388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1753 SAMTools SNP 214875 214875 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1753 SAMTools SNP 214905 214905 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1753 SAMTools SNP 215807 215807 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 215819 215819 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1753 SAMTools SNP 215858 215858 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1753 SAMTools SNP 216287 216287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1753 SAMTools SNP 216778 216778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1753 SAMTools SNP 217356 217356 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1753 SAMTools SNP 217419 217419 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1753 SAMTools SNP 217898 217898 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C26%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1753 SAMTools SNP 222577 222577 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1753 SAMTools SNP 222613 222613 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold1753 SAMTools SNP 223333 223333 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold1753 SAMTools SNP 223345 223345 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold1753 SAMTools SNP 223621 223621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1753 SAMTools SNP 223660 223660 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C0.011%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1753 SAMTools SNP 223666 223666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1753 SAMTools SNP 224094 224094 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold1753 SAMTools SNP 224550 224550 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 224646 224646 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1753 SAMTools SNP 225023 225023 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1753 SAMTools SNP 225049 225049 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1753 SAMTools SNP 225349 225349 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1753 SAMTools SNP 225354 225354 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C6%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.00078%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1753 SAMTools SNP 228573 228573 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 228591 228591 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 228854 228854 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.097%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1753 SAMTools SNP 229068 229068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1753 SAMTools SNP 230431 230431 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C26%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1753 SAMTools SNP 230479 230479 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C7%2C12%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1753 SAMTools SNP 231206 231206 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C17%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.051%2C0.013%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1753 SAMTools SNP 231264 231264 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1753 SAMTools SNP 231275 231275 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C163:31 scaffold1753 SAMTools SNP 231290 231290 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0373%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1753 SAMTools SNP 231926 231926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 237504 237504 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1753 SAMTools SNP 238384 238384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 240097 240097 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 240100 240100 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1753 SAMTools SNP 240190 240190 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1753 SAMTools SNP 240205 240205 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1753 SAMTools SNP 246800 246800 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1753 SAMTools SNP 246982 246982 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1753 SAMTools SNP 247147 247147 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold1753 SAMTools SNP 247176 247176 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1753 SAMTools SNP 247254 247254 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1753 SAMTools SNP 247756 247756 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C18%2C0:33 scaffold1753 SAMTools SNP 248770 248770 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C57%2C0:99 scaffold1753 SAMTools SNP 249202 249202 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1753 SAMTools SNP 250175 250175 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1753 SAMTools SNP 250216 250216 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D90.9%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C134:99 scaffold1753 SAMTools SNP 254549 254549 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1753 SAMTools SNP 255017 255017 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1753 SAMTools SNP 267656 267656 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1753 SAMTools SNP 271215 271215 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1753 SAMTools SNP 271231 271231 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1753 SAMTools SNP 271309 271309 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1754 SAMTools SNP 5863 5863 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1754 SAMTools SNP 5923 5923 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1754 SAMTools SNP 71982 71982 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1754 SAMTools SNP 165187 165187 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1754 SAMTools SNP 165244 165244 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1754 SAMTools SNP 166328 166328 23.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold1754 SAMTools SNP 166468 166468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1754 SAMTools SNP 166480 166480 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1754 SAMTools SNP 168384 168384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1754 SAMTools SNP 177040 177040 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1754 SAMTools SNP 177041 177041 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1754 SAMTools SNP 216992 216992 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1754 SAMTools SNP 225201 225201 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold1754 SAMTools SNP 225406 225406 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1754 SAMTools SNP 229533 229533 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1754 SAMTools SNP 229594 229594 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.32%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C35:38 scaffold1754 SAMTools SNP 229612 229612 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1757 SAMTools SNP 4891 4891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1757 SAMTools SNP 5345 5345 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1757 SAMTools SNP 5354 5354 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1757 SAMTools SNP 5374 5374 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1757 SAMTools SNP 5380 5380 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1757 SAMTools SNP 5397 5397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1757 SAMTools SNP 7077 7077 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C30%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1757 SAMTools SNP 7513 7513 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold1757 SAMTools SNP 7808 7808 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 8278 8278 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 8332 8332 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 12929 12929 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 13336 13336 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.14%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1757 SAMTools SNP 13348 13348 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold1757 SAMTools SNP 13438 13438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00052%2C0.16%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1757 SAMTools SNP 13465 13465 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.011%2C0.062%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1757 SAMTools SNP 14227 14227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1757 SAMTools SNP 17931 17931 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1757 SAMTools SNP 17967 17967 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 18710 18710 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 18725 18725 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 18947 18947 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C149:74 scaffold1757 SAMTools SNP 18980 18980 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.27%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1757 SAMTools SNP 22973 22973 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1757 SAMTools SNP 23234 23234 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold1757 SAMTools SNP 26122 26122 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1757 SAMTools SNP 26131 26131 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1757 SAMTools SNP 26630 26630 9.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1757 SAMTools SNP 26710 26710 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold1757 SAMTools SNP 26906 26906 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 28125 28125 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1757 SAMTools SNP 29989 29989 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1757 SAMTools SNP 30013 30013 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 38931 38931 32.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1757 SAMTools SNP 40526 40526 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C27%2C0:51 scaffold1757 SAMTools SNP 40903 40903 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1757 SAMTools SNP 41411 41411 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1757 SAMTools SNP 94103 94103 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold1757 SAMTools SNP 94587 94587 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C11%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C7.1e-31%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C234:99 scaffold1757 SAMTools SNP 94674 94674 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1.2e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1757 SAMTools SNP 96791 96791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1757 SAMTools SNP 97761 97761 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0017%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1757 SAMTools SNP 97820 97820 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.32%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C190:99 scaffold1757 SAMTools SNP 98223 98223 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0019%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1757 SAMTools SNP 98258 98258 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1757 SAMTools SNP 99748 99748 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1757 SAMTools SNP 99753 99753 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1757 SAMTools SNP 99757 99757 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold1757 SAMTools SNP 99829 99829 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C251:99 scaffold1757 SAMTools SNP 100173 100173 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.3%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C63:66 scaffold1757 SAMTools SNP 100209 100209 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1757 SAMTools SNP 100236 100236 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1757 SAMTools SNP 100778 100778 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1757 SAMTools SNP 100862 100862 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1757 SAMTools SNP 100886 100886 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold1757 SAMTools SNP 101689 101689 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1757 SAMTools SNP 106147 106147 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1757 SAMTools SNP 106154 106154 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1757 SAMTools SNP 106771 106771 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1758 SAMTools SNP 3509 3509 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1758 SAMTools SNP 3630 3630 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1758 SAMTools SNP 3661 3661 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C28:31 scaffold1758 SAMTools SNP 4015 4015 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.16%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1758 SAMTools SNP 4958 4958 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1758 SAMTools SNP 5167 5167 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold1758 SAMTools SNP 5624 5624 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1758 SAMTools SNP 5637 5637 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C76:79 scaffold1758 SAMTools SNP 5724 5724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1758 SAMTools SNP 6760 6760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1758 SAMTools SNP 7062 7062 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 7086 7086 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 7515 7515 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 7533 7533 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 7538 7538 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1758 SAMTools SNP 8203 8203 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1758 SAMTools SNP 8212 8212 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1758 SAMTools SNP 8641 8641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1758 SAMTools SNP 11047 11047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1758 SAMTools SNP 11066 11066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1758 SAMTools SNP 15198 15198 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C21%2C0:39 scaffold1758 SAMTools SNP 16034 16034 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D46%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1758 SAMTools SNP 16066 16066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D46%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1758 SAMTools SNP 17318 17318 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.37%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 17324 17324 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D6.2e-05%2C7.8e-05%2C1%2C6.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1758 SAMTools SNP 17881 17881 147 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C23%2C166%2C0%2C163:45 scaffold1758 SAMTools SNP 19002 19002 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1758 SAMTools SNP 19271 19271 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C92%2C0%2C18%3BMQ%3D48%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C9.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1758 SAMTools SNP 19277 19277 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C103%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1758 SAMTools SNP 19310 19310 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1758 SAMTools SNP 19696 19696 78.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold1758 SAMTools SNP 19747 19747 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1758 SAMTools SNP 20466 20466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C2%3BMQ%3D41%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1758 SAMTools SNP 20817 20817 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C23%3BMQ%3D38%3BFQ%3D76%3BPV4%3D0.5%2C1%2C1%2C1.6e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C103:99 scaffold1758 SAMTools SNP 21717 21717 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C214%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1758 SAMTools SNP 21738 21738 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C49%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C7.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C108%2C0:99 scaffold1758 SAMTools SNP 71606 71606 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C37%2C7%3BMQ%3D46%3BFQ%3D175%3BPV4%3D1%2C1.8e-38%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1758 SAMTools SNP 75547 75547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C4%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold1758 SAMTools SNP 76872 76872 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 76904 76904 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C183:63 scaffold1758 SAMTools SNP 76906 76906 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D74.7%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C102:99 scaffold1758 SAMTools SNP 77540 77540 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.33%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C243:99 scaffold1758 SAMTools SNP 77569 77569 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.018%2C0.019%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1758 SAMTools SNP 78921 78921 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C19%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1758 SAMTools SNP 80616 80616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C46%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1758 SAMTools SNP 80655 80655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C5%2C36%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.31%2C0.48%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold1758 SAMTools SNP 80913 80913 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1758 SAMTools SNP 80952 80952 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1758 SAMTools SNP 81991 81991 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1758 SAMTools SNP 82144 82144 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D51%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1e-36%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1758 SAMTools SNP 82201 82201 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C4%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 82604 82604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C5%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 82664 82664 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1758 SAMTools SNP 83404 83404 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1758 SAMTools SNP 83413 83413 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1758 SAMTools SNP 83434 83434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1758 SAMTools SNP 83810 83810 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1758 SAMTools SNP 83819 83819 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C21%2C0:39 scaffold1758 SAMTools SNP 83963 83963 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 84341 84341 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 84703 84703 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1758 SAMTools SNP 84760 84760 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1758 SAMTools SNP 87506 87506 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C16%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 87882 87882 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.037%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C239:87 scaffold1758 SAMTools SNP 87918 87918 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1758 SAMTools SNP 108704 108704 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.033%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1758 SAMTools SNP 108749 108749 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.095%2C1%2C1%2C5.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1758 SAMTools SNP 112409 112409 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1758 SAMTools SNP 114243 114243 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1758 SAMTools SNP 114412 114412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C43%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 115987 115987 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C42%2C9%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 116023 116023 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 116187 116187 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 116420 116420 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 116650 116650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 117035 117035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1758 SAMTools SNP 117460 117460 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1758 SAMTools SNP 118684 118684 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1758 SAMTools SNP 167665 167665 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1758 SAMTools SNP 167892 167892 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 167917 167917 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 167924 167924 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1758 SAMTools SNP 169496 169496 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold1758 SAMTools SNP 169562 169562 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1759 SAMTools SNP 6026 6026 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1759 SAMTools SNP 67490 67490 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1759 SAMTools SNP 67555 67555 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1759 SAMTools SNP 70819 70819 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1759 SAMTools SNP 71092 71092 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1759 SAMTools SNP 71095 71095 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1759 SAMTools SNP 71123 71123 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1759 SAMTools SNP 71132 71132 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1759 SAMTools SNP 71389 71389 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D42%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C197:98 scaffold1759 SAMTools SNP 75997 75997 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1759 SAMTools SNP 87698 87698 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C24%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 89617 89617 98.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0093%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C15:18 scaffold1759 SAMTools SNP 89922 89922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1759 SAMTools SNP 91232 91232 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1759 SAMTools SNP 91586 91586 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1759 SAMTools SNP 91723 91723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1759 SAMTools SNP 91920 91920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1759 SAMTools SNP 91944 91944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1759 SAMTools SNP 92165 92165 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C11%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1759 SAMTools SNP 92330 92330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1759 SAMTools SNP 92676 92676 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.21%2C0.0003%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1759 SAMTools SNP 92694 92694 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1759 SAMTools SNP 93168 93168 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0087%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1759 SAMTools SNP 93302 93302 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.021%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1759 SAMTools SNP 93451 93451 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1759 SAMTools SNP 93763 93763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C18%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1759 SAMTools SNP 94253 94253 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C16%2C19%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold1759 SAMTools SNP 94276 94276 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.12%2C0.34%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1759 SAMTools SNP 94303 94303 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 94686 94686 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 96419 96419 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.0033%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1759 SAMTools SNP 96880 96880 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C0.069%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 97438 97438 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1759 SAMTools SNP 97655 97655 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.077%2C0.044%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C205:61 scaffold1759 SAMTools SNP 97818 97818 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold1759 SAMTools SNP 97979 97979 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1759 SAMTools SNP 101970 101970 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C15%2C7%3BMQ%3D49%3BFQ%3D83%3BPV4%3D0.28%2C0.058%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1759 SAMTools SNP 102118 102118 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1759 SAMTools SNP 102190 102190 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold1759 SAMTools SNP 102433 102433 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.66%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1759 SAMTools SNP 102466 102466 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1759 SAMTools SNP 102734 102734 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 103289 103289 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.16%2C0.31%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1759 SAMTools SNP 103296 103296 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.71%2C0.049%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1759 SAMTools SNP 103308 103308 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1759 SAMTools SNP 103590 103590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 104202 104202 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C11%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0095%2C2.1e-10%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1759 SAMTools SNP 104392 104392 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1759 SAMTools SNP 104884 104884 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C58%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 104917 104917 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 104926 104926 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1759 SAMTools SNP 104932 104932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1759 SAMTools SNP 105115 105115 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C60%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1759 SAMTools SNP 105373 105373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1759 SAMTools SNP 110374 110374 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1759 SAMTools SNP 120323 120323 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1759 SAMTools SNP 139448 139448 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1759 SAMTools SNP 140793 140793 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1759 SAMTools SNP 140846 140846 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1759 SAMTools SNP 219714 219714 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1759 SAMTools SNP 219939 219939 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1759 SAMTools SNP 269452 269452 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C27%2C0:51 scaffold1759 SAMTools SNP 274668 274668 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1761 SAMTools SNP 697 697 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1761 SAMTools SNP 714 714 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1761 SAMTools SNP 755 755 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1761 SAMTools SNP 8049 8049 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D3.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C30:32 scaffold1761 SAMTools SNP 81570 81570 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1761 SAMTools SNP 81822 81822 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1761 SAMTools SNP 82914 82914 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1761 SAMTools SNP 82949 82949 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1761 SAMTools SNP 84340 84340 65.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D47%3BFQ%3D-47%3BPV4%3D1%2C1.2e-12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C20%2C0:37 scaffold1763 SAMTools SNP 15436 15436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 15439 15439 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 33693 33693 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold1763 SAMTools SNP 45929 45929 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C125%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.3%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 51391 51391 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C24%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1763 SAMTools SNP 68643 68643 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C92%2C15%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 68731 68731 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C43%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 78897 78897 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C32:28 scaffold1763 SAMTools SNP 99759 99759 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.16%2C2.3e-06%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1763 SAMTools SNP 99842 99842 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C9%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C5.4e-30%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1763 SAMTools SNP 110610 110610 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C12%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C166%2C0:99 scaffold1763 SAMTools SNP 111296 111296 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.37%2C2e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1763 SAMTools SNP 129928 129928 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D45.6%3BPV4%3D0.4%2C0.0009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C74:76 scaffold1763 SAMTools SNP 133350 133350 7.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.5%3BPV4%3D0.091%2C4.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C17:22 scaffold1763 SAMTools SNP 135604 135604 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C51%2C0:99 scaffold1763 SAMTools SNP 136264 136264 55.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold1763 SAMTools SNP 147871 147871 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1763 SAMTools SNP 148006 148006 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C38:41 scaffold1763 SAMTools SNP 166278 166278 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.034%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1763 SAMTools SNP 166571 166571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1763 SAMTools SNP 168211 168211 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 168238 168238 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1763 SAMTools SNP 168994 168994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C12%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1763 SAMTools SNP 169116 169116 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1763 SAMTools SNP 169122 169122 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.42%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1763 SAMTools SNP 172785 172785 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.14%2C0.0068%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C186:60 scaffold1763 SAMTools SNP 172800 172800 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1763 SAMTools SNP 173270 173270 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C227:99 scaffold1763 SAMTools SNP 173273 173273 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold1763 SAMTools SNP 173498 173498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 173540 173540 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 173694 173694 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.6%2C0.42%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1763 SAMTools SNP 173703 173703 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C155:99 scaffold1763 SAMTools SNP 174262 174262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C86%2C5%3BMQ%3D50%3BFQ%3D90%3BPV4%3D5.5e-19%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold1763 SAMTools SNP 174274 174274 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1e-14%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1763 SAMTools SNP 174771 174771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C46%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1763 SAMTools SNP 175196 175196 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1763 SAMTools SNP 175232 175232 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.11%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C211:99 scaffold1763 SAMTools SNP 175304 175304 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1763 SAMTools SNP 175483 175483 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1763 SAMTools SNP 175538 175538 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C13%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.007%2C1%2C1%2C2.3e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1763 SAMTools SNP 175552 175552 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C24%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.045%2C1.6e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1763 SAMTools SNP 175606 175606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C53%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1763 SAMTools SNP 175630 175630 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C15%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 176130 176130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C6%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 176139 176139 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C6%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 176383 176383 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C101%2C6%2C45%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.28%2C3.6e-57%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1763 SAMTools SNP 176494 176494 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C31%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1763 SAMTools SNP 176663 176663 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C53%2C57%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 177020 177020 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C16%2C19%3BMQ%3D50%3BFQ%3D219%3BPV4%3D5.1e-06%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1763 SAMTools SNP 181428 181428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1763 SAMTools SNP 182039 182039 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C233:99 scaffold1763 SAMTools SNP 182092 182092 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.46%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C207:99 scaffold1763 SAMTools SNP 182140 182140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1763 SAMTools SNP 182819 182819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1763 SAMTools SNP 184687 184687 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C0%2C6%3BMQ%3D49%3BFQ%3D49%3BPV4%3D1%2C0.22%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1763 SAMTools SNP 184843 184843 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1763 SAMTools SNP 187426 187426 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 187837 187837 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1763 SAMTools SNP 188699 188699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1763 SAMTools SNP 191507 191507 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1763 SAMTools SNP 191543 191543 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1763 SAMTools SNP 191552 191552 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1763 SAMTools SNP 191555 191555 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1763 SAMTools SNP 192071 192071 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C15%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.0034%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1763 SAMTools SNP 192116 192116 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C21%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0051%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1763 SAMTools SNP 192209 192209 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C0%2C12%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.03%2C1.3e-22%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1763 SAMTools SNP 193029 193029 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C12%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0003%2C0.22%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1763 SAMTools SNP 193092 193092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.32%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1763 SAMTools SNP 193125 193125 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C6%2C3%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1763 SAMTools SNP 196252 196252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 196258 196258 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 196525 196525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C10%2C82%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 196564 196564 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C24%2C63%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.00066%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 196570 196570 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C17%2C62%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 196579 196579 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C23%2C108%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C4.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 197410 197410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C9%2C84%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 197710 197710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C165%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 200449 200449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C81%2C18%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.068%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 201391 201391 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C185%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 202745 202745 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C27%2C60%3BMQ%3D50%3BFQ%3D-212%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C0:99 scaffold1763 SAMTools SNP 204291 204291 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.14%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C139:73 scaffold1763 SAMTools SNP 204292 204292 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C71:41 scaffold1763 SAMTools SNP 205372 205372 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C3.2e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C0%2C0:3 scaffold1763 SAMTools SNP 208209 208209 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1763 SAMTools SNP 208233 208233 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C69%2C0:99 scaffold1763 SAMTools SNP 208351 208351 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold1763 SAMTools SNP 208409 208409 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1763 SAMTools SNP 208506 208506 63.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold1763 SAMTools SNP 208676 208676 222 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0%2C253%2C255%2C250:99 scaffold1763 SAMTools SNP 208800 208800 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C255%2C0:99 scaffold1763 SAMTools SNP 208816 208816 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 209144 209144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C10%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1763 SAMTools SNP 209195 209195 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1763 SAMTools SNP 209248 209248 51.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C3.2e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C19%2C0:35 scaffold1763 SAMTools SNP 209291 209291 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C4%2C9%3BMQ%3D49%3BFQ%3D220%3BPV4%3D0.024%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1763 SAMTools SNP 209319 209319 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C50%3BMQ%3D49%3BFQ%3D-248%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C221%2C0:99 scaffold1763 SAMTools SNP 209336 209336 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C66%2C42%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.39%2C0.4%2C0.46%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 211309 211309 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C78%2C122%2C34%3BMQ%3D50%3BFQ%3D134%3BPV4%3D7.7e-05%2C2.3e-218%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1763 SAMTools SNP 215753 215753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1763 SAMTools SNP 218000 218000 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1763 SAMTools SNP 218513 218513 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1763 SAMTools SNP 218911 218911 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C27%2C0:51 scaffold1763 SAMTools SNP 219264 219264 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C7.9e-06%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1763 SAMTools SNP 219830 219830 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold1763 SAMTools SNP 220329 220329 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 220560 220560 41.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1763 SAMTools SNP 220701 220701 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1763 SAMTools SNP 222413 222413 19.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1763 SAMTools SNP 223929 223929 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.4e-12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C247:70 scaffold1763 SAMTools SNP 224412 224412 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C33%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1763 SAMTools SNP 224641 224641 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1763 SAMTools SNP 227692 227692 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold1763 SAMTools SNP 229350 229350 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.5%2C8.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1763 SAMTools SNP 229458 229458 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1763 SAMTools SNP 230034 230034 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.46%2C0.0014%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C182:99 scaffold1763 SAMTools SNP 231555 231555 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1430%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D667%2C89%2C524%2C66%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.8%2C0.42%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 233091 233091 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1763 SAMTools SNP 246480 246480 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 250489 250489 41.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1763 SAMTools SNP 252035 252035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D661%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C542%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 252167 252167 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C9%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1763 SAMTools SNP 252180 252180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C12%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1763 SAMTools SNP 252542 252542 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1763 SAMTools SNP 253088 253088 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D556%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D247%2C218%2C28%2C61%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0002%2C1%2C1%2C1.2e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1763 SAMTools SNP 253102 253102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C70%3BMQ%3D50%3BFQ%3D-214%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1763 SAMTools SNP 253124 253124 124 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C99%2C0%2C138%2C32%2C126:99 scaffold1763 SAMTools SNP 254752 254752 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C113%2C37%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 254851 254851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 254865 254865 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 255385 255385 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C67%2C4%2C44%3BMQ%3D50%3BFQ%3D159%3BPV4%3D4.5e-12%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1763 SAMTools SNP 255397 255397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 255520 255520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1763 SAMTools SNP 255529 255529 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1763 SAMTools SNP 255958 255958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold1763 SAMTools SNP 257014 257014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 260764 260764 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C30%2C0:54 scaffold1763 SAMTools SNP 261557 261557 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1763 SAMTools SNP 262170 262170 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 262247 262247 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 262567 262567 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1763 SAMTools SNP 262742 262742 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C122:99 scaffold1763 SAMTools SNP 263193 263193 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C27%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00025%2C2.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C41:44 scaffold1763 SAMTools SNP 263299 263299 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1763 SAMTools SNP 263881 263881 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C111%2C0:99 scaffold1763 SAMTools SNP 264417 264417 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C31%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.058%2C4.7e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1763 SAMTools SNP 264585 264585 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C1%2C32%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.027%2C6.9e-57%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1763 SAMTools SNP 264663 264663 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.049%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1763 SAMTools SNP 264816 264816 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C11%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1763 SAMTools SNP 264831 264831 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C7%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.014%2C0.032%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1763 SAMTools SNP 264846 264846 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.57%2C0.19%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1763 SAMTools SNP 265032 265032 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C246:99 scaffold1763 SAMTools SNP 265053 265053 118 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C104%2C167%2C0%2C158:27 scaffold1763 SAMTools SNP 265998 265998 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C18%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1763 SAMTools SNP 266393 266393 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1763 SAMTools SNP 266956 266956 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.047%2C2.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1763 SAMTools SNP 267497 267497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C8e-44%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 267651 267651 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C39%2C0:75 scaffold1763 SAMTools SNP 270092 270092 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C39%2C0:75 scaffold1763 SAMTools SNP 270114 270114 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.019%2C4e-07%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C207:99 scaffold1763 SAMTools SNP 270333 270333 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.2%2C9.5e-12%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1763 SAMTools SNP 270834 270834 13.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1763 SAMTools SNP 271124 271124 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1763 SAMTools SNP 271134 271134 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.059%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1763 SAMTools SNP 282042 282042 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 284572 284572 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold1763 SAMTools SNP 285602 285602 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold1763 SAMTools SNP 285621 285621 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 285637 285637 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 291964 291964 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 299244 299244 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1763 SAMTools SNP 299275 299275 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1763 SAMTools SNP 301101 301101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1763 SAMTools SNP 301126 301126 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1763 SAMTools SNP 301154 301154 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1763 SAMTools SNP 302552 302552 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1763 SAMTools SNP 304102 304102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1763 SAMTools SNP 304801 304801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1763 SAMTools SNP 305094 305094 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C0.43%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1763 SAMTools SNP 305163 305163 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1763 SAMTools SNP 305195 305195 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.24%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1763 SAMTools SNP 307176 307176 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.2%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1763 SAMTools SNP 307597 307597 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 308109 308109 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1763 SAMTools SNP 308143 308143 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 308187 308187 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 315253 315253 6.95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1763 SAMTools SNP 315354 315354 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1763 SAMTools SNP 315837 315837 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.059%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C186:34 scaffold1763 SAMTools SNP 315859 315859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D47%3BFQ%3D4.13%3BPV4%3D0.5%2C0.35%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C29:32 scaffold1763 SAMTools SNP 316042 316042 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1763 SAMTools SNP 316255 316255 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 316439 316439 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 321897 321897 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 321911 321911 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 322712 322712 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 326777 326777 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0049%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1763 SAMTools SNP 327407 327407 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 328446 328446 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 329276 329276 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 329277 329277 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1763 SAMTools SNP 329319 329319 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1763 SAMTools SNP 330705 330705 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.2%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1763 SAMTools SNP 330768 330768 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1763 SAMTools SNP 331341 331341 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1763 SAMTools SNP 332258 332258 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1763 SAMTools SNP 333350 333350 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1763 SAMTools SNP 333392 333392 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C33%2C0:63 scaffold1763 SAMTools SNP 333907 333907 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1763 SAMTools SNP 333925 333925 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1763 SAMTools SNP 334299 334299 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1763 SAMTools SNP 334443 334443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1763 SAMTools SNP 334482 334482 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1763 SAMTools SNP 335002 335002 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.42%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1763 SAMTools SNP 335647 335647 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1763 SAMTools SNP 341177 341177 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C29%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.4%2C2.3e-55%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1763 SAMTools SNP 351278 351278 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C223%2C0:99 scaffold1763 SAMTools SNP 351284 351284 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C234:99 scaffold1763 SAMTools SNP 356520 356520 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C1%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.25%2C1.3e-06%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1763 SAMTools SNP 356659 356659 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C0%2C15%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.011%2C5e-06%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1763 SAMTools SNP 357467 357467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 357539 357539 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1763 SAMTools SNP 357595 357595 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1763 SAMTools SNP 357948 357948 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1763 SAMTools SNP 358080 358080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1763 SAMTools SNP 365878 365878 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1763 SAMTools SNP 367692 367692 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C159:72 scaffold1763 SAMTools SNP 367791 367791 87.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C47%2C29%2C110%2C0%2C107:33 scaffold1763 SAMTools SNP 367812 367812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D43%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1763 SAMTools SNP 367828 367828 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C11%2C0%3BMQ%3D48%3BFQ%3D51%3BPV4%3D0.57%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1763 SAMTools SNP 368753 368753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C182%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 368762 368762 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C2%2C64%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 371749 371749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1763 SAMTools SNP 371761 371761 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1763 SAMTools SNP 371941 371941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C53%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.001%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 372010 372010 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.47%2C0.19%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1763 SAMTools SNP 372025 372025 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1763 SAMTools SNP 372495 372495 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1763 SAMTools SNP 372579 372579 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1763 SAMTools SNP 372669 372669 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C212:28 scaffold1763 SAMTools SNP 373932 373932 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C68%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C205%2C0:99 scaffold1763 SAMTools SNP 373965 373965 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 376624 376624 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C157%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 377445 377445 27.1 . . REF=A;ALT=T,G,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C14%2C28%2C33%2C0%2C57%2C33%2C0%2C19%2C57:17 scaffold1763 SAMTools SNP 377478 377478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C35%2C3%3BMQ%3D49%3BFQ%3D139%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1763 SAMTools SNP 378001 378001 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C107%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 378336 378336 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 380064 380064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C48%2C28%2C37%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.069%2C0.01%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 380439 380439 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1763 SAMTools SNP 380749 380749 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D20%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C47%2C11%2C25%2C0%2C22:50 scaffold1763 SAMTools SNP 381780 381780 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C27%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.011%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 381825 381825 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C26%2C3%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.098%2C0.042%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1763 SAMTools SNP 382179 382179 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1763 SAMTools SNP 382221 382221 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.44%2C0.056%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1763 SAMTools SNP 382263 382263 37.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1763 SAMTools SNP 383474 383474 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 383516 383516 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 383549 383549 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 383561 383561 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 384412 384412 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1763 SAMTools SNP 384415 384415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 384790 384790 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1763 SAMTools SNP 384805 384805 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C0:57 scaffold1763 SAMTools SNP 385000 385000 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C47%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 385217 385217 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C26%2C1%2C21%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00014%2C0.23%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1763 SAMTools SNP 385245 385245 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.024%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1763 SAMTools SNP 385272 385272 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.21%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1763 SAMTools SNP 385754 385754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C47%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 386810 386810 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C28%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.47%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 389661 389661 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 394090 394090 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1763 SAMTools SNP 394764 394764 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1763 SAMTools SNP 395112 395112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C46%2C32%2C42%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C6.4e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 400508 400508 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1763 SAMTools SNP 411617 411617 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 412780 412780 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1763 SAMTools SNP 412829 412829 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.024%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 414176 414176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1763 SAMTools SNP 414187 414187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1763 SAMTools SNP 415466 415466 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1763 SAMTools SNP 416127 416127 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C7%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00033%2C7.1e-07%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1763 SAMTools SNP 416209 416209 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.29%2C7.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C161:43 scaffold1763 SAMTools SNP 416575 416575 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0022%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1763 SAMTools SNP 416604 416604 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1763 SAMTools SNP 416622 416622 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1763 SAMTools SNP 416864 416864 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1763 SAMTools SNP 416879 416879 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1763 SAMTools SNP 416951 416951 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.014%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1763 SAMTools SNP 417446 417446 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.53%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C247:97 scaffold1763 SAMTools SNP 418575 418575 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold1763 SAMTools SNP 418586 418586 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1763 SAMTools SNP 418626 418626 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold1763 SAMTools SNP 419722 419722 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.44%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1763 SAMTools SNP 419731 419731 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.47%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1763 SAMTools SNP 423225 423225 21.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1763 SAMTools SNP 431984 431984 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 433166 433166 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1763 SAMTools SNP 433770 433770 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C200:30 scaffold1763 SAMTools SNP 433898 433898 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1763 SAMTools SNP 434898 434898 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1763 SAMTools SNP 435436 435436 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1763 SAMTools SNP 435687 435687 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 436095 436095 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 436350 436350 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1763 SAMTools SNP 436797 436797 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 436997 436997 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.4%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold1763 SAMTools SNP 437013 437013 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold1763 SAMTools SNP 437064 437064 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C132:99 scaffold1763 SAMTools SNP 437459 437459 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D45%3BFQ%3D107%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C190:99 scaffold1763 SAMTools SNP 437504 437504 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0114%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00025%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C240:37 scaffold1763 SAMTools SNP 439075 439075 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1763 SAMTools SNP 439076 439076 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1763 SAMTools SNP 439119 439119 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.058%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C235:99 scaffold1763 SAMTools SNP 442049 442049 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1763 SAMTools SNP 442058 442058 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C0.0075%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1763 SAMTools SNP 442821 442821 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1763 SAMTools SNP 443685 443685 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1763 SAMTools SNP 443690 443690 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.76%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C30:33 scaffold1763 SAMTools SNP 446614 446614 38.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1763 SAMTools SNP 446788 446788 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1763 SAMTools SNP 447095 447095 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1763 SAMTools SNP 447144 447144 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1763 SAMTools SNP 447186 447186 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1763 SAMTools SNP 447203 447203 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 447567 447567 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 448440 448440 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1763 SAMTools SNP 448449 448449 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1763 SAMTools SNP 449047 449047 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.33%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold1763 SAMTools SNP 449098 449098 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 449448 449448 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 449451 449451 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 449534 449534 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 452924 452924 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.33%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1763 SAMTools SNP 452927 452927 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1763 SAMTools SNP 453005 453005 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1763 SAMTools SNP 454350 454350 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 454613 454613 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1763 SAMTools SNP 455087 455087 90.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold1763 SAMTools SNP 455104 455104 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 455177 455177 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold1763 SAMTools SNP 459527 459527 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 459668 459668 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 459975 459975 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1763 SAMTools SNP 460384 460384 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1763 SAMTools SNP 460865 460865 94.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C18%2C0:33 scaffold1763 SAMTools SNP 460874 460874 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C219:69 scaffold1763 SAMTools SNP 461289 461289 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C219:99 scaffold1763 SAMTools SNP 462315 462315 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1763 SAMTools SNP 462438 462438 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold1763 SAMTools SNP 462528 462528 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1763 SAMTools SNP 462807 462807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.52%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold1763 SAMTools SNP 462835 462835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1763 SAMTools SNP 463580 463580 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 464166 464166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 464202 464202 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C11%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.0078%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 466009 466009 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 466403 466403 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1763 SAMTools SNP 467901 467901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1763 SAMTools SNP 468059 468059 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C114%2C0:99 scaffold1763 SAMTools SNP 468101 468101 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C19%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.2%2C2.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1763 SAMTools SNP 468912 468912 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C15%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.21%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1763 SAMTools SNP 469490 469490 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold1763 SAMTools SNP 470138 470138 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1763 SAMTools SNP 470421 470421 9.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-7.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C21:25 scaffold1763 SAMTools SNP 470482 470482 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.6e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C102:59 scaffold1763 SAMTools SNP 470540 470540 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.24%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1763 SAMTools SNP 470600 470600 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C36%2C0:69 scaffold1763 SAMTools SNP 470811 470811 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C9%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.5%2C1.1e-23%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1763 SAMTools SNP 471110 471110 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C75%2C0:94 scaffold1763 SAMTools SNP 471255 471255 61 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C36%2C0%2C79%2C10%2C76:69 scaffold1763 SAMTools SNP 488977 488977 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1763 SAMTools SNP 489016 489016 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C27%2C0:51 scaffold1763 SAMTools SNP 489071 489071 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C1%2C58%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5.8e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1763 SAMTools SNP 490636 490636 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C34%2C20%2C17%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0054%2C9.6e-31%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1763 SAMTools SNP 490672 490672 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C1%2C18%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.33%2C4.8e-37%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C251:49 scaffold1763 SAMTools SNP 491897 491897 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C9%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 492324 492324 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1.6e-08%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1763 SAMTools SNP 492788 492788 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C23%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D7.6e-06%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1763 SAMTools SNP 494182 494182 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C32%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 495589 495589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1763 SAMTools SNP 496322 496322 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C153%2C18%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 496335 496335 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C48%2C0%2C17%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.001%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1763 SAMTools SNP 496343 496343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-05%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1763 SAMTools SNP 497264 497264 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C84:19 scaffold1763 SAMTools SNP 497312 497312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C32%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1763 SAMTools SNP 498057 498057 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C33%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1763 SAMTools SNP 498105 498105 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1763 SAMTools SNP 498153 498153 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C129%2C0:99 scaffold1763 SAMTools SNP 500185 500185 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1763 SAMTools SNP 500202 500202 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C41:44 scaffold1763 SAMTools SNP 500308 500308 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1763 SAMTools SNP 500791 500791 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.15%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1763 SAMTools SNP 500809 500809 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1763 SAMTools SNP 501462 501462 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1763 SAMTools SNP 502675 502675 116 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold1763 SAMTools SNP 503743 503743 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 504168 504168 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 504491 504491 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 504767 504767 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 505091 505091 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 506572 506572 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1763 SAMTools SNP 507297 507297 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1763 SAMTools SNP 507337 507337 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 508717 508717 49.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1763 SAMTools SNP 509309 509309 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1763 SAMTools SNP 509491 509491 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 511549 511549 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1763 SAMTools SNP 511605 511605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1763 SAMTools SNP 511939 511939 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1763 SAMTools SNP 511951 511951 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 516183 516183 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1763 SAMTools SNP 524923 524923 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.074%2C1.1e-17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C241:99 scaffold1763 SAMTools SNP 525439 525439 67.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C3.4e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C4%2C0:7 scaffold1763 SAMTools SNP 534575 534575 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 542830 542830 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C24%2C0:45 scaffold1763 SAMTools SNP 545061 545061 26.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold1763 SAMTools SNP 545271 545271 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold1763 SAMTools SNP 545488 545488 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D40%3BFQ%3D33%3BPV4%3D0.49%2C0.025%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C180:63 scaffold1763 SAMTools SNP 552440 552440 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 553034 553034 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C1%3BMQ%3D38%3BFQ%3D52%3BPV4%3D0.072%2C0.15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C79:82 scaffold1763 SAMTools SNP 554582 554582 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 554616 554616 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 555458 555458 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1763 SAMTools SNP 556167 556167 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1763 SAMTools SNP 556721 556721 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 561199 561199 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1763 SAMTools SNP 567531 567531 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1763 SAMTools SNP 567817 567817 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1763 SAMTools SNP 567940 567940 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1763 SAMTools SNP 571615 571615 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 572929 572929 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C24%2C0:45 scaffold1763 SAMTools SNP 577352 577352 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1763 SAMTools SNP 594241 594241 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D2.4e-06%2C2.1e-14%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1763 SAMTools SNP 594689 594689 43.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold1763 SAMTools SNP 594968 594968 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C2.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1763 SAMTools SNP 595271 595271 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C38%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C1.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1763 SAMTools SNP 595779 595779 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.31%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1763 SAMTools SNP 595976 595976 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1763 SAMTools SNP 596489 596489 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C1%2C18%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C2.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1763 SAMTools SNP 596623 596623 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C0.0042%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1763 SAMTools SNP 596629 596629 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C9%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.28%2C0.039%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1763 SAMTools SNP 599215 599215 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C78%2C0:99 scaffold1766 SAMTools SNP 174 174 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1766 SAMTools SNP 25281 25281 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C4.3e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1766 SAMTools SNP 31426 31426 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C24%2C0:45 scaffold1766 SAMTools SNP 31717 31717 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C147%2C4%2C140%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0024%2C2.7e-210%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1766 SAMTools SNP 32514 32514 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D905%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C447%2C3%2C400%3BMQ%3D50%3BFQ%3D48%3BPV4%3D6.2e-10%2C0%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1766 SAMTools SNP 32844 32844 23.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1369%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C5%2C0:9 scaffold1766 SAMTools SNP 35212 35212 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1971%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C961%2C43%2C774%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0081%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 36595 36595 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1766 SAMTools SNP 38665 38665 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D252%2C312%2C236%2C288%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.95%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 40020 40020 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C111%2C59%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 42797 42797 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1766 SAMTools SNP 70530 70530 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1766 SAMTools SNP 71011 71011 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1766 SAMTools SNP 71080 71080 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C4%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 71501 71501 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1.5e-21%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1766 SAMTools SNP 71531 71531 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold1766 SAMTools SNP 71534 71534 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.062%2C0.11%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1766 SAMTools SNP 72043 72043 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C4%3BMQ%3D38%3BFQ%3D111%3BPV4%3D0.62%2C0.24%2C0.39%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C179:99 scaffold1766 SAMTools SNP 73266 73266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D45%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1766 SAMTools SNP 73510 73510 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D36%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1766 SAMTools SNP 73537 73537 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D36%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1766 SAMTools SNP 74535 74535 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1766 SAMTools SNP 74637 74637 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C20%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold1766 SAMTools SNP 75216 75216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1766 SAMTools SNP 81536 81536 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C11%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1766 SAMTools SNP 85178 85178 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1766 SAMTools SNP 85605 85605 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D29.9%3BPV4%3D1%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C61:60 scaffold1766 SAMTools SNP 85696 85696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 86648 86648 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1766 SAMTools SNP 86712 86712 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.44%2C0.35%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C151:99 scaffold1766 SAMTools SNP 86726 86726 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1766 SAMTools SNP 86759 86759 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.034%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1766 SAMTools SNP 87826 87826 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D47%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1766 SAMTools SNP 87901 87901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C6%3BMQ%3D48%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1766 SAMTools SNP 88922 88922 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D46%3BFQ%3D-10.4%3BPV4%3D1%2C0.41%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C17:20 scaffold1766 SAMTools SNP 88953 88953 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C5%2C0%3BMQ%3D49%3BFQ%3D44%3BPV4%3D0.29%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1766 SAMTools SNP 90857 90857 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1766 SAMTools SNP 90881 90881 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1766 SAMTools SNP 106404 106404 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold1766 SAMTools SNP 112658 112658 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1766 SAMTools SNP 115457 115457 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1766 SAMTools SNP 115599 115599 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C39%2C0:75 scaffold1766 SAMTools SNP 116468 116468 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D46%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C126:82 scaffold1766 SAMTools SNP 116512 116512 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 116536 116536 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1766 SAMTools SNP 116721 116721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1766 SAMTools SNP 116772 116772 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1766 SAMTools SNP 116811 116811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1766 SAMTools SNP 117098 117098 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1766 SAMTools SNP 117104 117104 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1766 SAMTools SNP 117373 117373 34.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1766 SAMTools SNP 130184 130184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1766 SAMTools SNP 130199 130199 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1766 SAMTools SNP 130234 130234 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1766 SAMTools SNP 130656 130656 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1766 SAMTools SNP 130680 130680 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.067%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1766 SAMTools SNP 130705 130705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1766 SAMTools SNP 130888 130888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 131128 131128 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.55%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1766 SAMTools SNP 131218 131218 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1766 SAMTools SNP 131226 131226 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.084%2C8.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1766 SAMTools SNP 131251 131251 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.19%2C1%2C1.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold1766 SAMTools SNP 131287 131287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 133816 133816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1766 SAMTools SNP 133876 133876 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0039%2C0.0047%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1766 SAMTools SNP 133886 133886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1766 SAMTools SNP 134212 134212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D45%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1766 SAMTools SNP 134499 134499 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C17%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.49%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 134539 134539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.03%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 135359 135359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1766 SAMTools SNP 138054 138054 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C9%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 138066 138066 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1766 SAMTools SNP 138081 138081 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C19%2C14%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.72%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1766 SAMTools SNP 138108 138108 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 139647 139647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D43%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1766 SAMTools SNP 140220 140220 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.0044%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C243:99 scaffold1766 SAMTools SNP 140644 140644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 140671 140671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1766 SAMTools SNP 141252 141252 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1766 SAMTools SNP 141264 141264 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1766 SAMTools SNP 141534 141534 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1766 SAMTools SNP 142128 142128 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1766 SAMTools SNP 142780 142780 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1766 SAMTools SNP 142807 142807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1766 SAMTools SNP 143370 143370 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1766 SAMTools SNP 143378 143378 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C16%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold1766 SAMTools SNP 143400 143400 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1766 SAMTools SNP 143624 143624 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C33%2C0:62 scaffold1766 SAMTools SNP 144640 144640 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D0.4%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold1766 SAMTools SNP 145242 145242 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C4.5e-20%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1766 SAMTools SNP 145944 145944 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C20%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.45%2C4.8e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1766 SAMTools SNP 146254 146254 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0029%2C1.1e-11%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1766 SAMTools SNP 146853 146853 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C221:76 scaffold1766 SAMTools SNP 146895 146895 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.33%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1766 SAMTools SNP 148300 148300 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1766 SAMTools SNP 148355 148355 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C16%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.33%2C0.13%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C212:99 scaffold1766 SAMTools SNP 148759 148759 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1766 SAMTools SNP 148765 148765 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D79.8%3BPV4%3D1%2C0.19%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C107:99 scaffold1767 SAMTools SNP 39568 39568 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1767 SAMTools SNP 39643 39643 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1767 SAMTools SNP 74731 74731 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1767 SAMTools SNP 88130 88130 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.025%2C0.0072%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1767 SAMTools SNP 89151 89151 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1767 SAMTools SNP 89568 89568 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1767 SAMTools SNP 90076 90076 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C11%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.79%2C3.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1767 SAMTools SNP 90274 90274 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1767 SAMTools SNP 91280 91280 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.28%2C0.46%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1767 SAMTools SNP 92548 92548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1767 SAMTools SNP 93121 93121 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 93469 93469 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.29%2C1%2C8.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C223:99 scaffold1767 SAMTools SNP 108738 108738 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 111707 111707 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C23%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.12%2C2.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1767 SAMTools SNP 112032 112032 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1767 SAMTools SNP 117064 117064 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1767 SAMTools SNP 129036 129036 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1767 SAMTools SNP 133392 133392 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1767 SAMTools SNP 135952 135952 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1767 SAMTools SNP 136021 136021 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1767 SAMTools SNP 142310 142310 3.02 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C18%2C15%2C30%2C0%2C27:4 scaffold1767 SAMTools SNP 142373 142373 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1767 SAMTools SNP 142943 142943 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 142973 142973 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 145873 145873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 145882 145882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 146523 146523 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1767 SAMTools SNP 146529 146529 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.4e-19%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C244:33 scaffold1767 SAMTools SNP 147493 147493 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1767 SAMTools SNP 147547 147547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 147938 147938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.0031%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 147956 147956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 147983 147983 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1767 SAMTools SNP 147986 147986 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1767 SAMTools SNP 148534 148534 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1767 SAMTools SNP 148578 148578 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1767 SAMTools SNP 148985 148985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1767 SAMTools SNP 150764 150764 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.058%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1767 SAMTools SNP 150833 150833 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1767 SAMTools SNP 151230 151230 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C0.00034%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold1767 SAMTools SNP 151253 151253 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1767 SAMTools SNP 151814 151814 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 151928 151928 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 152407 152407 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold1767 SAMTools SNP 156810 156810 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1767 SAMTools SNP 177674 177674 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1767 SAMTools SNP 180169 180169 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 207937 207937 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C5.8e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C17:20 scaffold1767 SAMTools SNP 208016 208016 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C36%2C0:69 scaffold1767 SAMTools SNP 213892 213892 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 213925 213925 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1767 SAMTools SNP 214183 214183 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1767 SAMTools SNP 220991 220991 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 223826 223826 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C21%2C0:39 scaffold1767 SAMTools SNP 224674 224674 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1767 SAMTools SNP 228824 228824 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1767 SAMTools SNP 230921 230921 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1767 SAMTools SNP 231067 231067 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1767 SAMTools SNP 232340 232340 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1767 SAMTools SNP 232368 232368 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1767 SAMTools SNP 247621 247621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1767 SAMTools SNP 266743 266743 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1767 SAMTools SNP 266749 266749 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1767 SAMTools SNP 267175 267175 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C36%2C0:69 scaffold1767 SAMTools SNP 267214 267214 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0:99 scaffold1767 SAMTools SNP 267418 267418 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C48%2C0:93 scaffold1767 SAMTools SNP 268087 268087 7.39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold1767 SAMTools SNP 275995 275995 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 276415 276415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 284808 284808 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 284811 284811 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 285997 285997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 286021 286021 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 288572 288572 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1767 SAMTools SNP 288850 288850 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1767 SAMTools SNP 288879 288879 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1767 SAMTools SNP 307245 307245 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1767 SAMTools SNP 307743 307743 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold1767 SAMTools SNP 308154 308154 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1767 SAMTools SNP 317984 317984 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1767 SAMTools SNP 319220 319220 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1767 SAMTools SNP 320191 320191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 320254 320254 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 320263 320263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 320411 320411 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1767 SAMTools SNP 320492 320492 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C229:65 scaffold1767 SAMTools SNP 320495 320495 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C227:62 scaffold1767 SAMTools SNP 320989 320989 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C193:99 scaffold1767 SAMTools SNP 321034 321034 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.41%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C242:99 scaffold1767 SAMTools SNP 321322 321322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 322039 322039 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1767 SAMTools SNP 324308 324308 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.35%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1767 SAMTools SNP 324341 324341 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1767 SAMTools SNP 326902 326902 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C50%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C184%2C0:99 scaffold1767 SAMTools SNP 326941 326941 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.094%2C7.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1767 SAMTools SNP 327018 327018 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C51%2C0:99 scaffold1767 SAMTools SNP 327124 327124 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.7%3BPV4%3D1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C46:28 scaffold1767 SAMTools SNP 327157 327157 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold1767 SAMTools SNP 327449 327449 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D45%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1767 SAMTools SNP 327868 327868 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 334049 334049 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1767 SAMTools SNP 363246 363246 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 363591 363591 138 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C23%2C8%2C164%2C0%2C161:27 scaffold1767 SAMTools SNP 363622 363622 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C144%2C0:99 scaffold1767 SAMTools SNP 363766 363766 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold1767 SAMTools SNP 364229 364229 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C2%3BMQ%3D23%3BFQ%3D4.65%3BPV4%3D0.067%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C36:30 scaffold1767 SAMTools SNP 364402 364402 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1767 SAMTools SNP 366132 366132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1767 SAMTools SNP 376300 376300 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.56%2C8.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C171:99 scaffold1767 SAMTools SNP 376910 376910 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1767 SAMTools SNP 377314 377314 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold1767 SAMTools SNP 381964 381964 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold1767 SAMTools SNP 385112 385112 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1767 SAMTools SNP 392156 392156 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1767 SAMTools SNP 392527 392527 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C69%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 392794 392794 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 392842 392842 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C0%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 392858 392858 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C53%2C1%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 393078 393078 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1767 SAMTools SNP 394083 394083 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C2%2C11%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.02%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1767 SAMTools SNP 394092 394092 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.025%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1767 SAMTools SNP 394431 394431 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C52%2C0%2C16%3BMQ%3D43%3BFQ%3D23%3BPV4%3D0.58%2C0.02%2C1.5e-06%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1767 SAMTools SNP 394461 394461 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C19%3BMQ%3D36%3BFQ%3D147%3BPV4%3D0.11%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1767 SAMTools SNP 395097 395097 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C167:57 scaffold1767 SAMTools SNP 397755 397755 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C27%2C0:51 scaffold1767 SAMTools SNP 397951 397951 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D0.12%2C1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1767 SAMTools SNP 398740 398740 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1767 SAMTools SNP 398853 398853 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1767 SAMTools SNP 398896 398896 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1767 SAMTools SNP 399491 399491 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold1767 SAMTools SNP 399498 399498 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 399504 399504 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1767 SAMTools SNP 399535 399535 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1767 SAMTools SNP 399537 399537 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold1767 SAMTools SNP 399567 399567 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.27%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C245:99 scaffold1767 SAMTools SNP 400340 400340 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1767 SAMTools SNP 405894 405894 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1767 SAMTools SNP 406367 406367 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0079%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0042%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold1767 SAMTools SNP 408411 408411 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1767 SAMTools SNP 408569 408569 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 409233 409233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1767 SAMTools SNP 409845 409845 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C36%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1767 SAMTools SNP 409994 409994 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1767 SAMTools SNP 411114 411114 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.49%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C69:72 scaffold1767 SAMTools SNP 414418 414418 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 414793 414793 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1767 SAMTools SNP 414887 414887 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1767 SAMTools SNP 418338 418338 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 418879 418879 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0036%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1767 SAMTools SNP 418890 418890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1767 SAMTools SNP 428747 428747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 432134 432134 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 440254 440254 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 443971 443971 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1767 SAMTools SNP 444764 444764 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1767 SAMTools SNP 454201 454201 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C13%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.37%2C1.2e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1767 SAMTools SNP 454252 454252 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1767 SAMTools SNP 454941 454941 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1767 SAMTools SNP 458926 458926 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 458977 458977 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1767 SAMTools SNP 460401 460401 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1767 SAMTools SNP 466325 466325 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C63%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1767 SAMTools SNP 467126 467126 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.13%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1767 SAMTools SNP 468064 468064 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1767 SAMTools SNP 470118 470118 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1767 SAMTools SNP 470169 470169 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1767 SAMTools SNP 470424 470424 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1767 SAMTools SNP 470505 470505 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1767 SAMTools SNP 470914 470914 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1767 SAMTools SNP 472344 472344 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1767 SAMTools SNP 473318 473318 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1767 SAMTools SNP 474238 474238 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold1767 SAMTools SNP 474250 474250 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1769 SAMTools SNP 12842 12842 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 12879 12879 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 12956 12956 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 12977 12977 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 18675 18675 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1769 SAMTools SNP 21449 21449 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1769 SAMTools SNP 21811 21811 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1769 SAMTools SNP 25270 25270 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1769 SAMTools SNP 35307 35307 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 42338 42338 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1769 SAMTools SNP 49630 49630 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1769 SAMTools SNP 51847 51847 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C163:77 scaffold1769 SAMTools SNP 64232 64232 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C36%2C0:69 scaffold1769 SAMTools SNP 64262 64262 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D41%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C14:17 scaffold1769 SAMTools SNP 64480 64480 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D32%3BFQ%3D35.5%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C72:65 scaffold1769 SAMTools SNP 65667 65667 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.042%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C73:76 scaffold1769 SAMTools SNP 66508 66508 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold1769 SAMTools SNP 66565 66565 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1769 SAMTools SNP 71102 71102 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D39.6%3BPV4%3D6.6e-05%2C2.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C68:70 scaffold1769 SAMTools SNP 71216 71216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1769 SAMTools SNP 72180 72180 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C23%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1769 SAMTools SNP 72194 72194 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C19%2C3%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1769 SAMTools SNP 72436 72436 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C33%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1769 SAMTools SNP 72484 72484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C33%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1769 SAMTools SNP 72782 72782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 73118 73118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C28%2C37%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 74256 74256 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C47%2C167%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 74299 74299 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1769 SAMTools SNP 74344 74344 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C113%2C4%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 78589 78589 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C26:29 scaffold1769 SAMTools SNP 78638 78638 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1769 SAMTools SNP 78794 78794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1769 SAMTools SNP 79988 79988 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C0%2C95%3BMQ%3D50%3BFQ%3D-145%3BPV4%3D2.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C118%2C0:99 scaffold1769 SAMTools SNP 80015 80015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C90%2C59%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.016%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1769 SAMTools SNP 80033 80033 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C16%2C25%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.76%2C0.12%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1769 SAMTools SNP 80036 80036 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C91%2C15%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1769 SAMTools SNP 80999 80999 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1769 SAMTools SNP 81001 81001 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1769 SAMTools SNP 81037 81037 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D664%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D276%2C90%2C269%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-11%2C1%2C1%2C1.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 81047 81047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C33%2C298%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 81849 81849 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1769 SAMTools SNP 81912 81912 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C67%2C0%2C9%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0042%2C1%2C1.8e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1769 SAMTools SNP 82426 82426 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.37%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1769 SAMTools SNP 90539 90539 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D45%3BFQ%3D10.4%3BPV4%3D1%2C0.0056%2C0.27%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C177:39 scaffold1769 SAMTools SNP 108319 108319 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C0%3BMQ%3D47%3BFQ%3D131%3BPV4%3D0.4%2C0.11%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C158:99 scaffold1769 SAMTools SNP 108421 108421 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold1769 SAMTools SNP 108776 108776 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1769 SAMTools SNP 114312 114312 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.0098%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C213:98 scaffold1769 SAMTools SNP 114903 114903 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1769 SAMTools SNP 114990 114990 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1769 SAMTools SNP 119187 119187 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1769 SAMTools SNP 119226 119226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1769 SAMTools SNP 119286 119286 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1769 SAMTools SNP 119757 119757 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1769 SAMTools SNP 120384 120384 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1769 SAMTools SNP 120387 120387 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1769 SAMTools SNP 120669 120669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.15%2C0.23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1769 SAMTools SNP 120951 120951 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1769 SAMTools SNP 120954 120954 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1769 SAMTools SNP 120972 120972 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1769 SAMTools SNP 121871 121871 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1769 SAMTools SNP 121874 121874 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1769 SAMTools SNP 122084 122084 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 122651 122651 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold1769 SAMTools SNP 122671 122671 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D1%2C8.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C221:44 scaffold1769 SAMTools SNP 123544 123544 178 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C16%3BMQ%3D46%3BFQ%3D-54%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C71%2C44%2C216%2C0%2C212:51 scaffold1769 SAMTools SNP 123568 123568 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1769 SAMTools SNP 123797 123797 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.15%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1769 SAMTools SNP 123812 123812 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1769 SAMTools SNP 124898 124898 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1769 SAMTools SNP 125345 125345 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C3%2C0%3BMQ%3D49%3BFQ%3D29%3BPV4%3D0.23%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1769 SAMTools SNP 126962 126962 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1769 SAMTools SNP 135374 135374 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1769 SAMTools SNP 139653 139653 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1769 SAMTools SNP 144682 144682 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1769 SAMTools SNP 145149 145149 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1769 SAMTools SNP 156253 156253 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 158345 158345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 158365 158365 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1769 SAMTools SNP 194417 194417 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.097%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 199826 199826 54.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold1769 SAMTools SNP 201674 201674 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 201776 201776 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.047%2C6.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1769 SAMTools SNP 201875 201875 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.53%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1769 SAMTools SNP 202298 202298 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C240:99 scaffold1769 SAMTools SNP 203771 203771 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1769 SAMTools SNP 204032 204032 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C172%2C0:99 scaffold1769 SAMTools SNP 204408 204408 34.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1769 SAMTools SNP 206536 206536 40.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1769 SAMTools SNP 206863 206863 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0022%2C8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1769 SAMTools SNP 206875 206875 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C33%2C0:63 scaffold1769 SAMTools SNP 207460 207460 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0041%2C1.1e-15%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1769 SAMTools SNP 207500 207500 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C51%2C0:99 scaffold1769 SAMTools SNP 210704 210704 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1769 SAMTools SNP 211118 211118 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1769 SAMTools SNP 225116 225116 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1769 SAMTools SNP 225881 225881 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C25%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C2e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C251:99 scaffold1769 SAMTools SNP 226076 226076 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C226:39 scaffold1769 SAMTools SNP 226973 226973 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1769 SAMTools SNP 226978 226978 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold177 SAMTools SNP 8549 8549 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold177 SAMTools SNP 10389 10389 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold177 SAMTools SNP 10416 10416 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold177 SAMTools SNP 10659 10659 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold177 SAMTools SNP 10810 10810 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold177 SAMTools SNP 15920 15920 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D23%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold177 SAMTools SNP 51870 51870 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C7%2C5%3BMQ%3D45%3BFQ%3D78%3BPV4%3D0.083%2C2.9e-09%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold177 SAMTools SNP 104106 104106 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold177 SAMTools SNP 112779 112779 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 117083 117083 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold177 SAMTools SNP 121275 121275 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 121563 121563 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 132183 132183 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold177 SAMTools SNP 135553 135553 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold177 SAMTools SNP 145221 145221 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 155450 155450 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold177 SAMTools SNP 155461 155461 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold177 SAMTools SNP 260633 260633 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold177 SAMTools SNP 302225 302225 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold177 SAMTools SNP 319452 319452 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C15:18 scaffold177 SAMTools SNP 319490 319490 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold177 SAMTools SNP 320618 320618 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold177 SAMTools SNP 320895 320895 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold177 SAMTools SNP 321749 321749 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C96:99 scaffold177 SAMTools SNP 322481 322481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold177 SAMTools SNP 322916 322916 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold177 SAMTools SNP 323006 323006 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold177 SAMTools SNP 323018 323018 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold177 SAMTools SNP 360884 360884 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold177 SAMTools SNP 361825 361825 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold177 SAMTools SNP 361838 361838 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold177 SAMTools SNP 388760 388760 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold177 SAMTools SNP 405717 405717 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 405755 405755 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 406375 406375 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold177 SAMTools SNP 407959 407959 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 407992 407992 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold177 SAMTools SNP 417255 417255 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 417562 417562 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 417610 417610 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 417614 417614 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold177 SAMTools SNP 418396 418396 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C45%2C0:87 scaffold177 SAMTools SNP 418423 418423 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.021%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C222:47 scaffold177 SAMTools SNP 418447 418447 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold177 SAMTools SNP 418459 418459 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.45%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold177 SAMTools SNP 419823 419823 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold177 SAMTools SNP 422706 422706 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold177 SAMTools SNP 422718 422718 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold177 SAMTools SNP 423069 423069 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold177 SAMTools SNP 423071 423071 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold177 SAMTools SNP 423222 423222 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold177 SAMTools SNP 423720 423720 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C7%2C100%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold177 SAMTools SNP 423780 423780 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.3%2C0.12%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold177 SAMTools SNP 424012 424012 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold177 SAMTools SNP 425102 425102 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 425735 425735 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 427058 427058 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold177 SAMTools SNP 427306 427306 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold177 SAMTools SNP 427416 427416 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold177 SAMTools SNP 434359 434359 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold177 SAMTools SNP 434842 434842 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.042%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold177 SAMTools SNP 435195 435195 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold177 SAMTools SNP 435828 435828 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold177 SAMTools SNP 436518 436518 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold177 SAMTools SNP 436556 436556 161 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C47%2C26%2C182%2C0%2C179:39 scaffold177 SAMTools SNP 437029 437029 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C75:78 scaffold177 SAMTools SNP 437045 437045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold177 SAMTools SNP 437183 437183 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.42%2C4e-13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C14:17 scaffold177 SAMTools SNP 438290 438290 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.5%2C0.0005%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold177 SAMTools SNP 454306 454306 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold177 SAMTools SNP 455509 455509 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.18%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold177 SAMTools SNP 455536 455536 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.55%2C0.00089%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C237:75 scaffold1770 SAMTools SNP 2307 2307 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 2317 2317 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 2410 2410 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 29028 29028 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 29975 29975 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 30512 30512 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1770 SAMTools SNP 31016 31016 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1770 SAMTools SNP 31066 31066 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C63%2C0:99 scaffold1770 SAMTools SNP 31098 31098 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C63%2C0:99 scaffold1770 SAMTools SNP 38102 38102 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 38761 38761 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold1770 SAMTools SNP 43861 43861 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 54161 54161 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1770 SAMTools SNP 54361 54361 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1770 SAMTools SNP 58492 58492 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1770 SAMTools SNP 58594 58594 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1770 SAMTools SNP 58609 58609 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1770 SAMTools SNP 72905 72905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1770 SAMTools SNP 73337 73337 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1770 SAMTools SNP 73349 73349 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1770 SAMTools SNP 73357 73357 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1770 SAMTools SNP 73370 73370 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1770 SAMTools SNP 74076 74076 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1770 SAMTools SNP 74119 74119 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1770 SAMTools SNP 75268 75268 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1770 SAMTools SNP 75831 75831 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold1770 SAMTools SNP 76642 76642 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1770 SAMTools SNP 76687 76687 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C124:99 scaffold1770 SAMTools SNP 77784 77784 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1770 SAMTools SNP 79004 79004 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1770 SAMTools SNP 79345 79345 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1770 SAMTools SNP 79350 79350 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1770 SAMTools SNP 79373 79373 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold1770 SAMTools SNP 79415 79415 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1770 SAMTools SNP 80144 80144 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1770 SAMTools SNP 83771 83771 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1770 SAMTools SNP 84598 84598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1770 SAMTools SNP 86564 86564 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C227%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1770 SAMTools SNP 86579 86579 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1770 SAMTools SNP 87939 87939 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1770 SAMTools SNP 87942 87942 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1770 SAMTools SNP 87978 87978 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C1%2C22%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1770 SAMTools SNP 88404 88404 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C35%3BMQ%3D45%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1770 SAMTools SNP 88840 88840 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C29%2C4%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1770 SAMTools SNP 88977 88977 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C27%2C102%2C7%3BMQ%3D46%3BFQ%3D225%3BPV4%3D4.2e-08%2C1%2C1%2C5.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1770 SAMTools SNP 88989 88989 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C8%2C35%2C29%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1.4e-09%2C0.013%2C9.1e-08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1770 SAMTools SNP 90252 90252 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C179%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1770 SAMTools SNP 90304 90304 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C110%2C6%2C18%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.13%2C1%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1770 SAMTools SNP 91011 91011 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1770 SAMTools SNP 91028 91028 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1770 SAMTools SNP 91327 91327 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1770 SAMTools SNP 91339 91339 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1770 SAMTools SNP 91520 91520 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1770 SAMTools SNP 91562 91562 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.046%2C0.0025%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1770 SAMTools SNP 93079 93079 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1770 SAMTools SNP 93108 93108 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1770 SAMTools SNP 94489 94489 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1770 SAMTools SNP 95363 95363 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1771 SAMTools SNP 1655 1655 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1771 SAMTools SNP 2266 2266 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1771 SAMTools SNP 2612 2612 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1771 SAMTools SNP 10066 10066 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1771 SAMTools SNP 10123 10123 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1771 SAMTools SNP 15486 15486 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1771 SAMTools SNP 22903 22903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D202%3BPV4%3D4.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1771 SAMTools SNP 22984 22984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 22987 22987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C27%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1771 SAMTools SNP 24202 24202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C19%2C10%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.35%2C0.001%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold1771 SAMTools SNP 24228 24228 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.13%2C0.0083%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1771 SAMTools SNP 24231 24231 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.56%2C0.0024%2C1%2C5.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1771 SAMTools SNP 24907 24907 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1771 SAMTools SNP 25355 25355 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold1771 SAMTools SNP 25783 25783 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1771 SAMTools SNP 25800 25800 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1771 SAMTools SNP 26148 26148 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1771 SAMTools SNP 26169 26169 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1771 SAMTools SNP 26680 26680 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1771 SAMTools SNP 26704 26704 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1771 SAMTools SNP 26834 26834 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.096%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1771 SAMTools SNP 27710 27710 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1771 SAMTools SNP 27730 27730 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 29213 29213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 29228 29228 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C2%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.42%2C0.028%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1771 SAMTools SNP 32314 32314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1771 SAMTools SNP 32913 32913 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 33794 33794 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1771 SAMTools SNP 33935 33935 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 36250 36250 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1771 SAMTools SNP 36253 36253 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1771 SAMTools SNP 44452 44452 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1771 SAMTools SNP 45551 45551 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C90:33 scaffold1771 SAMTools SNP 45824 45824 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1771 SAMTools SNP 49781 49781 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1771 SAMTools SNP 52487 52487 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 54312 54312 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1771 SAMTools SNP 54347 54347 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 54787 54787 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1771 SAMTools SNP 54831 54831 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C6%3BMQ%3D48%3BFQ%3D70%3BPV4%3D0.046%2C0.00011%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1771 SAMTools SNP 55484 55484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C14%2C2%3BMQ%3D48%3BFQ%3D185%3BPV4%3D0.00075%2C0.14%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1771 SAMTools SNP 55499 55499 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D46%3BFQ%3D111%3BPV4%3D0.095%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C138:99 scaffold1771 SAMTools SNP 55559 55559 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1771 SAMTools SNP 56058 56058 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.077%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold1771 SAMTools SNP 56103 56103 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1771 SAMTools SNP 56118 56118 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1771 SAMTools SNP 56491 56491 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1771 SAMTools SNP 56509 56509 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1771 SAMTools SNP 56530 56530 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1771 SAMTools SNP 56554 56554 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1771 SAMTools SNP 61493 61493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1771 SAMTools SNP 61620 61620 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D291%2C5%2C329%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1771 SAMTools SNP 96058 96058 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1772 SAMTools SNP 13830 13830 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1772 SAMTools SNP 122943 122943 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1772 SAMTools SNP 127957 127957 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1772 SAMTools SNP 271520 271520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1772 SAMTools SNP 291969 291969 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1772 SAMTools SNP 291978 291978 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1772 SAMTools SNP 293470 293470 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1772 SAMTools SNP 295587 295587 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1772 SAMTools SNP 367344 367344 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1772 SAMTools SNP 372221 372221 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1772 SAMTools SNP 374381 374381 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1772 SAMTools SNP 375163 375163 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D25%3BPV4%3D1%2C7.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C242:55 scaffold1772 SAMTools SNP 375353 375353 45.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1772 SAMTools SNP 402342 402342 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1773 SAMTools SNP 1285 1285 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1773 SAMTools SNP 1313 1313 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1773 SAMTools SNP 2214 2214 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1773 SAMTools SNP 13457 13457 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1773 SAMTools SNP 15561 15561 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1773 SAMTools SNP 67608 67608 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1773 SAMTools SNP 133415 133415 8.22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1773 SAMTools SNP 166089 166089 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1773 SAMTools SNP 167095 167095 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold1773 SAMTools SNP 167106 167106 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1773 SAMTools SNP 217906 217906 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D43%3BFQ%3D75.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C109:99 scaffold1773 SAMTools SNP 219499 219499 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D29%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C45%2C0:87 scaffold1773 SAMTools SNP 219526 219526 30.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C1%3BMQ%3D23%3BFQ%3D-11.3%3BPV4%3D1%2C0.23%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C16:19 scaffold1773 SAMTools SNP 220040 220040 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D20%3BFQ%3D4.93%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C35:31 scaffold1773 SAMTools SNP 249442 249442 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1773 SAMTools SNP 249510 249510 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1773 SAMTools SNP 258973 258973 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1773 SAMTools SNP 264632 264632 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1774 SAMTools SNP 388 388 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 646 646 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.22%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1774 SAMTools SNP 649 649 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1774 SAMTools SNP 1667 1667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1774 SAMTools SNP 3093 3093 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C232:99 scaffold1774 SAMTools SNP 3874 3874 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1774 SAMTools SNP 3905 3905 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.044%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1774 SAMTools SNP 3952 3952 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1774 SAMTools SNP 4381 4381 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 4908 4908 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 5069 5069 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 5099 5099 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1774 SAMTools SNP 5141 5141 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 5492 5492 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold1774 SAMTools SNP 5537 5537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1774 SAMTools SNP 6128 6128 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1774 SAMTools SNP 6134 6134 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1774 SAMTools SNP 6147 6147 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1774 SAMTools SNP 6721 6721 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1774 SAMTools SNP 7265 7265 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1774 SAMTools SNP 7690 7690 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1774 SAMTools SNP 7699 7699 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold1774 SAMTools SNP 8167 8167 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1774 SAMTools SNP 8182 8182 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1774 SAMTools SNP 8527 8527 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.026%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1774 SAMTools SNP 8544 8544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C4%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.13%2C0.042%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1774 SAMTools SNP 10267 10267 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1774 SAMTools SNP 10369 10369 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C84:87 scaffold1774 SAMTools SNP 16321 16321 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold1774 SAMTools SNP 16365 16365 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 55622 55622 4.75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1774 SAMTools SNP 55992 55992 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C87%2C0:99 scaffold1774 SAMTools SNP 64448 64448 8.22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1774 SAMTools SNP 64562 64562 34.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1774 SAMTools SNP 65319 65319 135 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C120%2C0%2C161%2C97%2C158:99 scaffold1774 SAMTools SNP 65325 65325 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C5%2C14%2C0%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D0.32%2C1.4e-16%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C243:41 scaffold1774 SAMTools SNP 65433 65433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1774 SAMTools SNP 65478 65478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C7%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 65487 65487 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C2%2C11%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.16%2C0.44%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1774 SAMTools SNP 65496 65496 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 65523 65523 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C0%2C34%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.00041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1774 SAMTools SNP 66183 66183 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C49%2C11%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C1e-16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C134%2C0:99 scaffold1774 SAMTools SNP 66729 66729 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C50%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1774 SAMTools SNP 66816 66816 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C255%2C0:99 scaffold1774 SAMTools SNP 66864 66864 51.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C34%2C13%2C79%2C0%2C73:39 scaffold1774 SAMTools SNP 67087 67087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.23%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1774 SAMTools SNP 67122 67122 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.23%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 67304 67304 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C8%2C16%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.022%2C1.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1774 SAMTools SNP 67343 67343 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1774 SAMTools SNP 67765 67765 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1774 SAMTools SNP 68229 68229 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C42%2C0:81 scaffold1774 SAMTools SNP 68268 68268 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1774 SAMTools SNP 68626 68626 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1774 SAMTools SNP 68629 68629 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.00061%2C0.043%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1774 SAMTools SNP 68644 68644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1774 SAMTools SNP 68694 68694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1774 SAMTools SNP 69520 69520 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.12%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1774 SAMTools SNP 69549 69549 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 69973 69973 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 71416 71416 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 71469 71469 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 71839 71839 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.23%2C0.00052%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1774 SAMTools SNP 72268 72268 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 72710 72710 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C6%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.1%2C3.4e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1774 SAMTools SNP 79830 79830 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.51%2C1%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1774 SAMTools SNP 79851 79851 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.24%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1774 SAMTools SNP 81070 81070 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1774 SAMTools SNP 81492 81492 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 82001 82001 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C41:44 scaffold1774 SAMTools SNP 82067 82067 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1774 SAMTools SNP 82245 82245 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C39%2C0:75 scaffold1774 SAMTools SNP 95009 95009 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C11%2C2%3BMQ%3D36%3BFQ%3D105%3BPV4%3D0.26%2C1%2C0.22%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C132:99 scaffold1774 SAMTools SNP 100497 100497 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C36%2C36%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0027%2C6.7e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1774 SAMTools SNP 100575 100575 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C60%2C0%2C30%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1774 SAMTools SNP 101137 101137 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1774 SAMTools SNP 101140 101140 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold1774 SAMTools SNP 101695 101695 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1774 SAMTools SNP 101721 101721 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1774 SAMTools SNP 102094 102094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1774 SAMTools SNP 102148 102148 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 102475 102475 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.06%2C3.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1774 SAMTools SNP 102538 102538 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C3%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1774 SAMTools SNP 103747 103747 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 104093 104093 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 108582 108582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C17%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1774 SAMTools SNP 108738 108738 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 109006 109006 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 109510 109510 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1774 SAMTools SNP 109555 109555 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1774 SAMTools SNP 110010 110010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1774 SAMTools SNP 110535 110535 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 110546 110546 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C19%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 112535 112535 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C5%3BMQ%3D49%3BFQ%3D142%3BPV4%3D0.12%2C0.048%2C0.25%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1774 SAMTools SNP 114726 114726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1774 SAMTools SNP 114730 114730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1774 SAMTools SNP 114934 114934 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold1774 SAMTools SNP 115464 115464 16.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1774 SAMTools SNP 115629 115629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.41%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1774 SAMTools SNP 116343 116343 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1774 SAMTools SNP 116737 116737 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.43%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C163:76 scaffold1774 SAMTools SNP 119963 119963 31.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1774 SAMTools SNP 120116 120116 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1774 SAMTools SNP 121550 121550 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1774 SAMTools SNP 121637 121637 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1774 SAMTools SNP 121668 121668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1774 SAMTools SNP 122789 122789 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 123165 123165 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1774 SAMTools SNP 123258 123258 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1774 SAMTools SNP 123786 123786 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1774 SAMTools SNP 124102 124102 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C195:99 scaffold1774 SAMTools SNP 124177 124177 66.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold1774 SAMTools SNP 124473 124473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1774 SAMTools SNP 124842 124842 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C232:34 scaffold1774 SAMTools SNP 125030 125030 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D6.8e-06%2C4.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1774 SAMTools SNP 127740 127740 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1774 SAMTools SNP 128443 128443 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.38%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1774 SAMTools SNP 128757 128757 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 135587 135587 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 139342 139342 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1774 SAMTools SNP 139904 139904 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1774 SAMTools SNP 139934 139934 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1774 SAMTools SNP 140571 140571 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D96.6%3BPV4%3D1%2C0.22%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C134:99 scaffold1774 SAMTools SNP 140698 140698 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold1774 SAMTools SNP 140702 140702 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1774 SAMTools SNP 147164 147164 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1774 SAMTools SNP 148070 148070 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.07%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C210:99 scaffold1774 SAMTools SNP 148111 148111 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C204:99 scaffold1774 SAMTools SNP 148113 148113 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C248:99 scaffold1774 SAMTools SNP 148126 148126 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C246:99 scaffold1774 SAMTools SNP 148392 148392 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C196:46 scaffold1774 SAMTools SNP 148399 148399 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C8%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C221:99 scaffold178 SAMTools SNP 26366 26366 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 26426 26426 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 58638 58638 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold178 SAMTools SNP 58659 58659 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold178 SAMTools SNP 59258 59258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold178 SAMTools SNP 59314 59314 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 60556 60556 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold178 SAMTools SNP 61545 61545 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold178 SAMTools SNP 65606 65606 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 72846 72846 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold178 SAMTools SNP 93298 93298 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold178 SAMTools SNP 111264 111264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 111278 111278 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold178 SAMTools SNP 111788 111788 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold178 SAMTools SNP 112052 112052 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1780 SAMTools SNP 4728 4728 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1780 SAMTools SNP 5636 5636 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1780 SAMTools SNP 5641 5641 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.018%2C1.9e-06%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1780 SAMTools SNP 5756 5756 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 5757 5757 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 6961 6961 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1780 SAMTools SNP 8992 8992 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1780 SAMTools SNP 9014 9014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1780 SAMTools SNP 9875 9875 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1780 SAMTools SNP 9901 9901 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1780 SAMTools SNP 22999 22999 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1780 SAMTools SNP 23170 23170 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 23773 23773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C74%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1780 SAMTools SNP 23776 23776 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1780 SAMTools SNP 27016 27016 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.43%2C0.15%2C1%2C4.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C225:48 scaffold1780 SAMTools SNP 27085 27085 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1780 SAMTools SNP 27106 27106 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1780 SAMTools SNP 27506 27506 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1780 SAMTools SNP 42588 42588 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 43255 43255 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 49296 49296 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 49524 49524 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 50148 50148 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1780 SAMTools SNP 50206 50206 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1780 SAMTools SNP 50234 50234 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1780 SAMTools SNP 57488 57488 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1780 SAMTools SNP 57761 57761 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1780 SAMTools SNP 57804 57804 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1780 SAMTools SNP 58030 58030 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.071%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C112:74 scaffold1780 SAMTools SNP 72919 72919 20.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1780 SAMTools SNP 80081 80081 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C36%2C0:69 scaffold1780 SAMTools SNP 80210 80210 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C33%2C8%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1.8e-07%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold1780 SAMTools SNP 81528 81528 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 84926 84926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C37%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D0.3%2C0.32%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1780 SAMTools SNP 84941 84941 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C2%3BMQ%3D46%3BFQ%3D27%3BPV4%3D0.59%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1780 SAMTools SNP 84947 84947 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C4%3BMQ%3D46%3BFQ%3D109%3BPV4%3D0.61%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1780 SAMTools SNP 84956 84956 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C10%3BMQ%3D46%3BFQ%3D138%3BPV4%3D0.62%2C0.39%2C0.14%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold1780 SAMTools SNP 86596 86596 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C0%2C12%3BMQ%3D49%3BFQ%3D83%3BPV4%3D7.1e-06%2C0.14%2C0.35%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1780 SAMTools SNP 91306 91306 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C242:99 scaffold1780 SAMTools SNP 92847 92847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 156810 156810 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1780 SAMTools SNP 157078 157078 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C42%2C0:81 scaffold1780 SAMTools SNP 157118 157118 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 157178 157178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1780 SAMTools SNP 158211 158211 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.23%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C26:29 scaffold1780 SAMTools SNP 158251 158251 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D0.33%2C0.0085%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C41:44 scaffold1780 SAMTools SNP 158386 158386 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1780 SAMTools SNP 159675 159675 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1780 SAMTools SNP 159682 159682 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1780 SAMTools SNP 160386 160386 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1780 SAMTools SNP 160404 160404 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.34%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1780 SAMTools SNP 169031 169031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1780 SAMTools SNP 174247 174247 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C40%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D0.25%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold1780 SAMTools SNP 174313 174313 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1780 SAMTools SNP 174349 174349 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.15%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1780 SAMTools SNP 174361 174361 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.36%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1780 SAMTools SNP 175376 175376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1780 SAMTools SNP 175388 175388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1780 SAMTools SNP 175454 175454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C18%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1780 SAMTools SNP 176419 176419 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C16%2C90%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.085%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 176634 176634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C92%2C27%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 178170 178170 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1780 SAMTools SNP 184337 184337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C24%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1780 SAMTools SNP 184354 184354 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C19%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1780 SAMTools SNP 184497 184497 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C3%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1780 SAMTools SNP 184578 184578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1780 SAMTools SNP 186450 186450 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold1780 SAMTools SNP 191440 191440 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 193110 193110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D844%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C713%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 193170 193170 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C14%2C105%2C209%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0063%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 201186 201186 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C56%2C124%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 202803 202803 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C135%2C171%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 206979 206979 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1780 SAMTools SNP 210299 210299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C35%2C34%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 211479 211479 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C32%2C54%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 211590 211590 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C54%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1780 SAMTools SNP 211602 211602 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 211735 211735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C11%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.37%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 212290 212290 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1780 SAMTools SNP 214946 214946 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C113:49 scaffold1780 SAMTools SNP 217115 217115 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C5.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1780 SAMTools SNP 217808 217808 46.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold1780 SAMTools SNP 225761 225761 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C37%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C175%2C0:99 scaffold1780 SAMTools SNP 225833 225833 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C11%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C4.7e-08%2C1%2C2.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 229408 229408 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1780 SAMTools SNP 229519 229519 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1780 SAMTools SNP 229833 229833 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1780 SAMTools SNP 229961 229961 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold1780 SAMTools SNP 229971 229971 116 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C18%2C143%2C0%2C140:21 scaffold1780 SAMTools SNP 229973 229973 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1780 SAMTools SNP 230225 230225 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C132:99 scaffold1780 SAMTools SNP 230268 230268 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1780 SAMTools SNP 230306 230306 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C32:35 scaffold1780 SAMTools SNP 230657 230657 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1780 SAMTools SNP 230706 230706 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1780 SAMTools SNP 231193 231193 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1780 SAMTools SNP 231510 231510 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.45%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1780 SAMTools SNP 231651 231651 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 231680 231680 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C13%2C45%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 231899 231899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 232146 232146 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 232201 232201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1780 SAMTools SNP 232203 232203 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1780 SAMTools SNP 232540 232540 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D49%3BFQ%3D52%3BPV4%3D0.051%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1780 SAMTools SNP 233874 233874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C10%3BMQ%3D49%3BFQ%3D22%3BPV4%3D1%2C0.49%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold1780 SAMTools SNP 233925 233925 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D0.055%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C236:30 scaffold1780 SAMTools SNP 234000 234000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C12%2C5%3BMQ%3D49%3BFQ%3D91%3BPV4%3D0.25%2C0.38%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold1780 SAMTools SNP 234009 234009 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.28%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1780 SAMTools SNP 234869 234869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1780 SAMTools SNP 234911 234911 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1780 SAMTools SNP 237004 237004 51.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1780 SAMTools SNP 241413 241413 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C212:99 scaffold1780 SAMTools SNP 242763 242763 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1780 SAMTools SNP 243073 243073 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0097%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C166:99 scaffold1780 SAMTools SNP 243079 243079 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1780 SAMTools SNP 243088 243088 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C0.34%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1780 SAMTools SNP 243127 243127 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1780 SAMTools SNP 243142 243142 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1780 SAMTools SNP 243453 243453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold1780 SAMTools SNP 244250 244250 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 244256 244256 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C5%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1780 SAMTools SNP 245057 245057 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C28%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1780 SAMTools SNP 245189 245189 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C23%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1780 SAMTools SNP 245222 245222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C14%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.19%2C0.035%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1780 SAMTools SNP 245235 245235 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C18%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.21%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1780 SAMTools SNP 245306 245306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1780 SAMTools SNP 245324 245324 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold1780 SAMTools SNP 245558 245558 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 245894 245894 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 246569 246569 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 246588 246588 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1780 SAMTools SNP 246641 246641 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C0%2C11%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.34%2C0.0037%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1780 SAMTools SNP 246668 246668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 246679 246679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 249643 249643 28.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1780 SAMTools SNP 252760 252760 61.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C15%2C0:27 scaffold1780 SAMTools SNP 252820 252820 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1780 SAMTools SNP 259082 259082 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1780 SAMTools SNP 271412 271412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 271438 271438 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 272912 272912 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1780 SAMTools SNP 273592 273592 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C3%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.19%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1780 SAMTools SNP 276818 276818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 277607 277607 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1780 SAMTools SNP 282729 282729 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.11%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1780 SAMTools SNP 283748 283748 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1780 SAMTools SNP 283760 283760 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1780 SAMTools SNP 285067 285067 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C6.1e-21%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C211:74 scaffold1780 SAMTools SNP 286519 286519 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C226:58 scaffold1780 SAMTools SNP 286850 286850 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C1%2C73%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C7.8e-143%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1780 SAMTools SNP 287055 287055 58.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold1780 SAMTools SNP 287069 287069 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C34%2C19%2C31%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.84%2C1.5e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1780 SAMTools SNP 288882 288882 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C26%2C34%2C13%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.23%2C1.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1780 SAMTools SNP 294444 294444 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C66%2C0:99 scaffold1780 SAMTools SNP 294597 294597 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C60%2C0:99 scaffold1780 SAMTools SNP 294666 294666 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1780 SAMTools SNP 294678 294678 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1780 SAMTools SNP 297216 297216 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.5%2C0.018%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C204:65 scaffold1780 SAMTools SNP 297987 297987 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1780 SAMTools SNP 300009 300009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C12%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1780 SAMTools SNP 300407 300407 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1780 SAMTools SNP 302049 302049 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C12%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C243:99 scaffold1780 SAMTools SNP 302070 302070 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C9.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C218:36 scaffold1780 SAMTools SNP 302085 302085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1780 SAMTools SNP 305476 305476 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C33%2C0:63 scaffold1780 SAMTools SNP 306000 306000 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C82%2C37%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 306019 306019 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C47%2C46%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 306437 306437 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C4%2C6%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1780 SAMTools SNP 306464 306464 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1780 SAMTools SNP 312434 312434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C12%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1780 SAMTools SNP 312719 312719 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1780 SAMTools SNP 334704 334704 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold1780 SAMTools SNP 334752 334752 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold1780 SAMTools SNP 336439 336439 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.031%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C129:99 scaffold1780 SAMTools SNP 336457 336457 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1780 SAMTools SNP 336633 336633 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1780 SAMTools SNP 336932 336932 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1780 SAMTools SNP 336949 336949 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1780 SAMTools SNP 339060 339060 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1780 SAMTools SNP 347569 347569 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C241:96 scaffold1780 SAMTools SNP 347578 347578 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C225:96 scaffold1780 SAMTools SNP 359494 359494 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 362315 362315 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1780 SAMTools SNP 362674 362674 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1780 SAMTools SNP 367502 367502 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D40.5%3BPV4%3D1%2C5.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C71:70 scaffold1780 SAMTools SNP 367555 367555 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C6%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.27%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C28%2C0:53 scaffold1780 SAMTools SNP 367996 367996 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1780 SAMTools SNP 368044 368044 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1781 SAMTools SNP 1428 1428 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1781 SAMTools SNP 1685 1685 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C33%2C0:63 scaffold1781 SAMTools SNP 1730 1730 44.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold1781 SAMTools SNP 17890 17890 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1781 SAMTools SNP 21311 21311 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C239:99 scaffold1781 SAMTools SNP 26085 26085 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1781 SAMTools SNP 26403 26403 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1781 SAMTools SNP 26409 26409 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1781 SAMTools SNP 26466 26466 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C8%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 26798 26798 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C38%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 26827 26827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-05%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 26849 26849 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0025%2C2e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1781 SAMTools SNP 26859 26859 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.9e-05%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C219:99 scaffold1781 SAMTools SNP 27093 27093 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C69%2C0:99 scaffold1781 SAMTools SNP 28845 28845 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C30%3BMQ%3D50%3BFQ%3D-150%3BPV4%3D0.42%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1781 SAMTools SNP 28851 28851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1781 SAMTools SNP 28932 28932 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C25%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C6.5e-14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C9:12 scaffold1781 SAMTools SNP 29338 29338 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold1781 SAMTools SNP 30769 30769 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1781 SAMTools SNP 47383 47383 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1781 SAMTools SNP 48849 48849 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1781 SAMTools SNP 48876 48876 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1781 SAMTools SNP 53230 53230 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1781 SAMTools SNP 54172 54172 80 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-55;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C170%2C142%2C221%2C0%2C206:53 scaffold1781 SAMTools SNP 55871 55871 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.07%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1781 SAMTools SNP 56038 56038 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.059%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1781 SAMTools SNP 56087 56087 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 56419 56419 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1781 SAMTools SNP 57236 57236 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 58944 58944 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.038%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1781 SAMTools SNP 58974 58974 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.58%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1781 SAMTools SNP 58995 58995 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C2%2C76%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.27%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 60259 60259 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1781 SAMTools SNP 60862 60862 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1781 SAMTools SNP 60943 60943 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold1781 SAMTools SNP 62108 62108 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1781 SAMTools SNP 62126 62126 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1781 SAMTools SNP 63215 63215 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.31%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1781 SAMTools SNP 63232 63232 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D28%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1781 SAMTools SNP 63676 63676 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.31%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1781 SAMTools SNP 64467 64467 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1781 SAMTools SNP 65230 65230 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1781 SAMTools SNP 65251 65251 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C8%2C21%2C6%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D0.36%2C2.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1781 SAMTools SNP 65284 65284 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C2%2C26%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.11%2C5.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C250:99 scaffold1781 SAMTools SNP 65866 65866 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C36%2C6%3BMQ%3D48%3BFQ%3D66%3BPV4%3D0.0084%2C1.1e-41%2C0.0032%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1781 SAMTools SNP 65998 65998 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C2%2C8%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1781 SAMTools SNP 66849 66849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1781 SAMTools SNP 67041 67041 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1781 SAMTools SNP 67053 67053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1781 SAMTools SNP 67524 67524 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1781 SAMTools SNP 67542 67542 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1781 SAMTools SNP 67564 67564 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C9%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.00043%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1781 SAMTools SNP 68113 68113 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C37%3BMQ%3D50%3BFQ%3D-203%3BPV4%3D1%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C176%2C0:99 scaffold1781 SAMTools SNP 71516 71516 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1781 SAMTools SNP 75034 75034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1781 SAMTools SNP 81287 81287 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1782 SAMTools SNP 8261 8261 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 8266 8266 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 8312 8312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 8384 8384 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 8942 8942 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D46%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C208:37 scaffold1782 SAMTools SNP 11513 11513 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1782 SAMTools SNP 27240 27240 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1782 SAMTools SNP 27344 27344 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1782 SAMTools SNP 27592 27592 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.13%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1782 SAMTools SNP 28117 28117 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1782 SAMTools SNP 28962 28962 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1782 SAMTools SNP 28977 28977 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1782 SAMTools SNP 30047 30047 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1782 SAMTools SNP 30696 30696 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.69%2C8.4e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1782 SAMTools SNP 30774 30774 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1782 SAMTools SNP 32144 32144 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C16%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1782 SAMTools SNP 32185 32185 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C1%3BMQ%3D44%3BFQ%3D59%3BPV4%3D0.35%2C1%2C0.48%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1782 SAMTools SNP 32258 32258 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1782 SAMTools SNP 32263 32263 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C1%2C3%3BMQ%3D46%3BFQ%3D67%3BPV4%3D0.47%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1782 SAMTools SNP 33355 33355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C14%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1782 SAMTools SNP 40363 40363 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C9%2C12%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1%2C1%2C0.28%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1782 SAMTools SNP 40793 40793 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C8%2C0%3BMQ%3D42%3BFQ%3D34%3BPV4%3D1%2C4.4e-05%2C0.27%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1782 SAMTools SNP 40815 40815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1782 SAMTools SNP 40818 40818 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D48%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C198:70 scaffold1782 SAMTools SNP 41947 41947 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C8%3BMQ%3D45%3BFQ%3D198%3BPV4%3D0.036%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1782 SAMTools SNP 41959 41959 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D42%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1782 SAMTools SNP 41980 41980 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C4%3BMQ%3D37%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C232:99 scaffold1782 SAMTools SNP 42040 42040 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D31%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C69%2C0:99 scaffold1782 SAMTools SNP 43336 43336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D44%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1782 SAMTools SNP 43357 43357 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00033%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1782 SAMTools SNP 44192 44192 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1782 SAMTools SNP 44258 44258 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D35%3BFQ%3D6.58%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C42:33 scaffold1782 SAMTools SNP 44356 44356 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1782 SAMTools SNP 44361 44361 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold1782 SAMTools SNP 44384 44384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 45902 45902 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1782 SAMTools SNP 46498 46498 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D0.33%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1782 SAMTools SNP 56028 56028 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1782 SAMTools SNP 70668 70668 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1782 SAMTools SNP 78111 78111 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1782 SAMTools SNP 78192 78192 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1782 SAMTools SNP 86027 86027 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C48%2C0:93 scaffold1782 SAMTools SNP 86114 86114 31.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1782 SAMTools SNP 86789 86789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1782 SAMTools SNP 86980 86980 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 86987 86987 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 87180 87180 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 87505 87505 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 87599 87599 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1782 SAMTools SNP 87798 87798 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1782 SAMTools SNP 88145 88145 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1782 SAMTools SNP 88434 88434 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1782 SAMTools SNP 88445 88445 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.2%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1782 SAMTools SNP 89534 89534 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 89978 89978 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 90044 90044 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1782 SAMTools SNP 90093 90093 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1782 SAMTools SNP 90099 90099 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1784 SAMTools SNP 28636 28636 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1785 SAMTools SNP 1610 1610 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 32277 32277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 32688 32688 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1785 SAMTools SNP 32728 32728 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00099%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1785 SAMTools SNP 32730 32730 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C12%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1785 SAMTools SNP 33071 33071 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C2%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.52%2C1%2C0.016%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1785 SAMTools SNP 33076 33076 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C0%3BMQ%3D48%3BFQ%3D60%3BPV4%3D0.23%2C0.012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1785 SAMTools SNP 33241 33241 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 34120 34120 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1785 SAMTools SNP 37841 37841 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1785 SAMTools SNP 37922 37922 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1785 SAMTools SNP 52151 52151 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1785 SAMTools SNP 52258 52258 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1785 SAMTools SNP 52307 52307 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C271%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 52677 52677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C223%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 52739 52739 44.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold1785 SAMTools SNP 52768 52768 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1785 SAMTools SNP 52774 52774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 53435 53435 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1785 SAMTools SNP 58744 58744 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1785 SAMTools SNP 63921 63921 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1785 SAMTools SNP 65461 65461 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C27%2C0:51 scaffold1785 SAMTools SNP 67465 67465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C40%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1785 SAMTools SNP 67514 67514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 68029 68029 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1785 SAMTools SNP 70440 70440 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 70486 70486 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.15%2C7.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1785 SAMTools SNP 70541 70541 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.31%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1785 SAMTools SNP 70714 70714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C89%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 74694 74694 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1785 SAMTools SNP 75642 75642 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 76543 76543 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1785 SAMTools SNP 77983 77983 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.46%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 78370 78370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1785 SAMTools SNP 78858 78858 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 78862 78862 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 83481 83481 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C80:60 scaffold1785 SAMTools SNP 83621 83621 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1785 SAMTools SNP 86849 86849 19.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold1785 SAMTools SNP 87508 87508 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1785 SAMTools SNP 88011 88011 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1785 SAMTools SNP 88039 88039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 88117 88117 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1785 SAMTools SNP 103964 103964 34.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1785 SAMTools SNP 107759 107759 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1785 SAMTools SNP 107913 107913 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1785 SAMTools SNP 108300 108300 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C217:99 scaffold1785 SAMTools SNP 108321 108321 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C11:14 scaffold1785 SAMTools SNP 109444 109444 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.12%2C0.00012%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1785 SAMTools SNP 109724 109724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1785 SAMTools SNP 109809 109809 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1785 SAMTools SNP 110389 110389 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 111030 111030 51.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1785 SAMTools SNP 111105 111105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1785 SAMTools SNP 113355 113355 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C20%2C7%2C7%3BMQ%3D49%3BFQ%3D157%3BPV4%3D0.055%2C0.062%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1785 SAMTools SNP 115239 115239 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C18%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1785 SAMTools SNP 116646 116646 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1785 SAMTools SNP 119412 119412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C27%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 120084 120084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 121710 121710 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1785 SAMTools SNP 122449 122449 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C69:72 scaffold1785 SAMTools SNP 122466 122466 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1785 SAMTools SNP 122534 122534 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold1785 SAMTools SNP 122719 122719 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1785 SAMTools SNP 125810 125810 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.5e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C107:52 scaffold1785 SAMTools SNP 125850 125850 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.2e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold1785 SAMTools SNP 125987 125987 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1785 SAMTools SNP 125993 125993 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 132905 132905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 132953 132953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 132975 132975 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.042%2C0.00065%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1785 SAMTools SNP 134023 134023 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C211:53 scaffold1785 SAMTools SNP 136017 136017 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D139%2C39%2C23%2C4%3BMQ%3D47%3BFQ%3D6.99%3BPV4%3D0.61%2C1%2C0.049%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1785 SAMTools SNP 136067 136067 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C169%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 136080 136080 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C7%3BMQ%3D49%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C238:99 scaffold1785 SAMTools SNP 136472 136472 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C90%2C0%2C46%3BMQ%3D45%3BFQ%3D172%3BPV4%3D0.18%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1785 SAMTools SNP 136766 136766 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C52%2C12%2C30%3BMQ%3D36%3BFQ%3D194%3BPV4%3D0.55%2C1%2C0.23%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1785 SAMTools SNP 158145 158145 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.045%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 161929 161929 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1785 SAMTools SNP 161944 161944 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1785 SAMTools SNP 163456 163456 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.36%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C210:37 scaffold1785 SAMTools SNP 167454 167454 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 167456 167456 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 168734 168734 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C75%2C0:99 scaffold1785 SAMTools SNP 171525 171525 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold1785 SAMTools SNP 172342 172342 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1785 SAMTools SNP 173170 173170 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 174008 174008 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1785 SAMTools SNP 174331 174331 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1785 SAMTools SNP 174350 174350 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.49%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold1785 SAMTools SNP 174823 174823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 174854 174854 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 174857 174857 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 175128 175128 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1785 SAMTools SNP 176078 176078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C28%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.49%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 176109 176109 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.032%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1785 SAMTools SNP 176118 176118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.37%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 176136 176136 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.061%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 176536 176536 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 176545 176545 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.27%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 176593 176593 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.12%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1785 SAMTools SNP 177100 177100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1785 SAMTools SNP 177103 177103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1785 SAMTools SNP 177196 177196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1785 SAMTools SNP 177644 177644 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C31%2C3%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.31%2C0.48%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1785 SAMTools SNP 177653 177653 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1785 SAMTools SNP 177734 177734 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 177955 177955 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.11%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 178157 178157 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.11%2C0.18%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1785 SAMTools SNP 178160 178160 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C17%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1785 SAMTools SNP 178210 178210 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.023%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1785 SAMTools SNP 184266 184266 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 184419 184419 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C41%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.068%2C1%2C4.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 185851 185851 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1785 SAMTools SNP 187043 187043 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1785 SAMTools SNP 187093 187093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1785 SAMTools SNP 187128 187128 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.029%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1785 SAMTools SNP 187129 187129 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.66%2C0.34%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1785 SAMTools SNP 187436 187436 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 187560 187560 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 187583 187583 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C53%2C6%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 187643 187643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C6%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 188165 188165 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C16%2C5%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D8.7e-05%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1785 SAMTools SNP 188360 188360 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C77%2C5%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1785 SAMTools SNP 188384 188384 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 188407 188407 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C60%3BMQ%3D50%3BFQ%3D214%3BPV4%3D7e-06%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1785 SAMTools SNP 188789 188789 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 188962 188962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C186%2C20%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 189695 189695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 192890 192890 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C8.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C207:99 scaffold1785 SAMTools SNP 193947 193947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 194411 194411 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.12%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1785 SAMTools SNP 195136 195136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1785 SAMTools SNP 195154 195154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1785 SAMTools SNP 197712 197712 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 197865 197865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 197901 197901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1785 SAMTools SNP 198213 198213 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.6%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1785 SAMTools SNP 198558 198558 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1785 SAMTools SNP 198580 198580 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 198584 198584 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.19%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 199690 199690 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1785 SAMTools SNP 200748 200748 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C238:99 scaffold1785 SAMTools SNP 201054 201054 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1785 SAMTools SNP 202763 202763 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1785 SAMTools SNP 203676 203676 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1785 SAMTools SNP 204403 204403 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 205463 205463 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1785 SAMTools SNP 205491 205491 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1785 SAMTools SNP 205601 205601 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.8e-06%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C191:34 scaffold1785 SAMTools SNP 206088 206088 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 206091 206091 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1785 SAMTools SNP 206375 206375 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.048%2C0.47%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C13%2C0:23 scaffold1785 SAMTools SNP 206559 206559 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.0021%2C1%2C1%2C2.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C189:99 scaffold1785 SAMTools SNP 206583 206583 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C208:99 scaffold1785 SAMTools SNP 208978 208978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1785 SAMTools SNP 208991 208991 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.2%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 209044 209044 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C7%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1785 SAMTools SNP 209296 209296 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 214425 214425 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 219227 219227 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1785 SAMTools SNP 219230 219230 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1785 SAMTools SNP 220098 220098 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 220104 220104 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 220302 220302 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 220767 220767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C10%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D0.42%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold1785 SAMTools SNP 221128 221128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 221467 221467 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C13%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1785 SAMTools SNP 221635 221635 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D4.2e-06%2C2.3e-11%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1785 SAMTools SNP 221853 221853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 221949 221949 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1785 SAMTools SNP 222253 222253 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C49%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1785 SAMTools SNP 222476 222476 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1785 SAMTools SNP 222488 222488 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.46%2C0.32%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1785 SAMTools SNP 222511 222511 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1785 SAMTools SNP 222529 222529 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.52%2C0.34%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C206:99 scaffold1785 SAMTools SNP 222793 222793 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C45%2C0:87 scaffold1785 SAMTools SNP 222913 222913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C46:49 scaffold1785 SAMTools SNP 223087 223087 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1785 SAMTools SNP 223811 223811 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C0%2C27%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.54%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1785 SAMTools SNP 224052 224052 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1785 SAMTools SNP 225665 225665 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1785 SAMTools SNP 225865 225865 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1785 SAMTools SNP 226162 226162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1785 SAMTools SNP 226183 226183 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 226282 226282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 226883 226883 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 227200 227200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1785 SAMTools SNP 227941 227941 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold1785 SAMTools SNP 235135 235135 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C156:31 scaffold1785 SAMTools SNP 236249 236249 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 236572 236572 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 241508 241508 32.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1785 SAMTools SNP 242104 242104 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.9e-15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C184:41 scaffold1785 SAMTools SNP 242974 242974 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.082%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1785 SAMTools SNP 245220 245220 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.007%2C4.6e-06%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C247:71 scaffold1785 SAMTools SNP 245226 245226 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1785 SAMTools SNP 245235 245235 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1785 SAMTools SNP 245244 245244 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C184:99 scaffold1785 SAMTools SNP 245250 245250 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C199:99 scaffold1785 SAMTools SNP 245286 245286 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1785 SAMTools SNP 245862 245862 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1785 SAMTools SNP 245874 245874 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 245916 245916 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 245931 245931 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1785 SAMTools SNP 246269 246269 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.2%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1785 SAMTools SNP 246293 246293 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1785 SAMTools SNP 246320 246320 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1785 SAMTools SNP 246540 246540 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 246546 246546 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 246609 246609 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1785 SAMTools SNP 246799 246799 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1785 SAMTools SNP 246983 246983 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1785 SAMTools SNP 247353 247353 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 247948 247948 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1785 SAMTools SNP 247955 247955 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 248233 248233 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1785 SAMTools SNP 248247 248247 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1785 SAMTools SNP 248742 248742 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 248754 248754 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 248842 248842 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 248859 248859 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1785 SAMTools SNP 249267 249267 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1785 SAMTools SNP 249336 249336 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 249405 249405 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 250181 250181 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1785 SAMTools SNP 250229 250229 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold1785 SAMTools SNP 250740 250740 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1785 SAMTools SNP 250964 250964 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold1785 SAMTools SNP 251588 251588 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.22%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C169:99 scaffold1785 SAMTools SNP 254050 254050 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C78%2C16%2C30%3BMQ%3D25%3BFQ%3D191%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1785 SAMTools SNP 254650 254650 114 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C11%2C9%2C6%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.011%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1785 SAMTools SNP 255153 255153 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 255211 255211 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C56%2C37%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1785 SAMTools SNP 255784 255784 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C13%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.03%2C1%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1785 SAMTools SNP 256686 256686 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C42%2C0%2C26%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1.3e-05%2C2.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1785 SAMTools SNP 256738 256738 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C0%2C11%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1785 SAMTools SNP 257832 257832 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1785 SAMTools SNP 262061 262061 55.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1785 SAMTools SNP 262119 262119 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1785 SAMTools SNP 264949 264949 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C108%2C1%2C104%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.37%2C2.2e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1785 SAMTools SNP 265401 265401 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1785 SAMTools SNP 265428 265428 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1785 SAMTools SNP 266902 266902 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1785 SAMTools SNP 266905 266905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1785 SAMTools SNP 267181 267181 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 267202 267202 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C49%2C60%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1785 SAMTools SNP 270297 270297 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1785 SAMTools SNP 270315 270315 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.11%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C182:99 scaffold1785 SAMTools SNP 270354 270354 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.45%2C0.2%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C172:99 scaffold1785 SAMTools SNP 270596 270596 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1785 SAMTools SNP 271560 271560 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1785 SAMTools SNP 271590 271590 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1785 SAMTools SNP 271608 271608 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1785 SAMTools SNP 271804 271804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1785 SAMTools SNP 271816 271816 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0096%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1785 SAMTools SNP 272322 272322 39.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C11%2C5%2C70%2C0%2C67:10 scaffold1785 SAMTools SNP 272634 272634 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.48%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C216:94 scaffold1785 SAMTools SNP 272638 272638 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1785 SAMTools SNP 272661 272661 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 272679 272679 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C212:99 scaffold1785 SAMTools SNP 274031 274031 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.08%2C0.0021%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1785 SAMTools SNP 274600 274600 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1785 SAMTools SNP 275112 275112 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C51%2C0:99 scaffold1785 SAMTools SNP 275351 275351 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C190:48 scaffold1785 SAMTools SNP 278379 278379 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1785 SAMTools SNP 278423 278423 49.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1785 SAMTools SNP 286915 286915 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1785 SAMTools SNP 287446 287446 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.38%2C6.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1785 SAMTools SNP 287527 287527 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C6%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C4.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1785 SAMTools SNP 287634 287634 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1785 SAMTools SNP 287938 287938 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold1785 SAMTools SNP 288483 288483 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C8%2C21%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.23%2C7.4e-35%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C248:99 scaffold1785 SAMTools SNP 288505 288505 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.2%2C6.9e-14%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1785 SAMTools SNP 289320 289320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 289394 289394 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.56%2C0.00011%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1785 SAMTools SNP 289658 289658 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 290595 290595 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1785 SAMTools SNP 290941 290941 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 291151 291151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.59%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1785 SAMTools SNP 291952 291952 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C28%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0065%2C0.17%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C50:53 scaffold1785 SAMTools SNP 292944 292944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 293793 293793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1785 SAMTools SNP 294369 294369 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1785 SAMTools SNP 294465 294465 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1785 SAMTools SNP 295378 295378 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 295420 295420 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1785 SAMTools SNP 297382 297382 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1785 SAMTools SNP 297843 297843 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1785 SAMTools SNP 297858 297858 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1785 SAMTools SNP 298023 298023 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 298026 298026 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 298246 298246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1785 SAMTools SNP 298385 298385 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 298487 298487 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C236:99 scaffold1785 SAMTools SNP 298636 298636 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1785 SAMTools SNP 299520 299520 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 304331 304331 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.36%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C233:80 scaffold1785 SAMTools SNP 310919 310919 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1785 SAMTools SNP 310969 310969 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 319901 319901 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1785 SAMTools SNP 321480 321480 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1785 SAMTools SNP 324213 324213 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 325787 325787 9.97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1785 SAMTools SNP 326986 326986 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 327031 327031 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1785 SAMTools SNP 327827 327827 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C47%2C83%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 328319 328319 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C6%2C16%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.75%2C1.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1785 SAMTools SNP 328334 328334 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C5.6e-29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 329773 329773 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C0.078%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1785 SAMTools SNP 331765 331765 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C85:36 scaffold1785 SAMTools SNP 332081 332081 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 332156 332156 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 333433 333433 50.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold1785 SAMTools SNP 333701 333701 90 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C48%2C0%2C110%2C14%2C104:93 scaffold1785 SAMTools SNP 333861 333861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C83%2C19%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 336073 336073 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C57%2C25%2C47%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.74%2C1.1e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1785 SAMTools SNP 336226 336226 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C33%2C1%2C40%3BMQ%3D50%3BFQ%3D181%3BPV4%3D6.9e-06%2C1.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1785 SAMTools SNP 336268 336268 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C9%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.014%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1785 SAMTools SNP 336313 336313 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D6.1e-07%2C8e-17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1785 SAMTools SNP 337665 337665 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.33%2C0.0003%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C82:48 scaffold1785 SAMTools SNP 340492 340492 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C227:30 scaffold1785 SAMTools SNP 341129 341129 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1785 SAMTools SNP 346513 346513 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1785 SAMTools SNP 346602 346602 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C181:99 scaffold1785 SAMTools SNP 346789 346789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1785 SAMTools SNP 346827 346827 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1785 SAMTools SNP 346851 346851 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1785 SAMTools SNP 346861 346861 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1785 SAMTools SNP 349404 349404 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1785 SAMTools SNP 350264 350264 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1785 SAMTools SNP 350453 350453 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 350854 350854 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 353470 353470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C3%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1785 SAMTools SNP 353492 353492 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C10%2C0%3BMQ%3D45%3BFQ%3D44%3BPV4%3D0.15%2C1%2C8e-09%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1785 SAMTools SNP 353519 353519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C14%2C8%3BMQ%3D42%3BFQ%3D109%3BPV4%3D0.015%2C0.19%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold1785 SAMTools SNP 353685 353685 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D35%3BFQ%3D4.77%3BPV4%3D0.17%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C30:33 scaffold1785 SAMTools SNP 354335 354335 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C7%3BMQ%3D45%3BFQ%3D-40%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold1785 SAMTools SNP 354362 354362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D45%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1785 SAMTools SNP 354458 354458 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.32%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1785 SAMTools SNP 357251 357251 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D30%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C57%2C0:92 scaffold1785 SAMTools SNP 363038 363038 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D46%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1785 SAMTools SNP 363487 363487 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C6%3BMQ%3D41%3BFQ%3D63%3BPV4%3D0.054%2C0.25%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold1785 SAMTools SNP 365210 365210 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C24%2C0:45 scaffold1785 SAMTools SNP 365379 365379 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1785 SAMTools SNP 380404 380404 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C49%2C0%2C14%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0021%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1785 SAMTools SNP 380410 380410 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C53%2C0%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0022%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1785 SAMTools SNP 381083 381083 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C55%2C12%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1785 SAMTools SNP 381398 381398 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C31%2C9%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.045%2C0.4%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1785 SAMTools SNP 382576 382576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 382846 382846 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1785 SAMTools SNP 382858 382858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1785 SAMTools SNP 388755 388755 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 389046 389046 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1785 SAMTools SNP 393453 393453 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.087%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1785 SAMTools SNP 398875 398875 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1785 SAMTools SNP 398944 398944 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1785 SAMTools SNP 399424 399424 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1785 SAMTools SNP 399435 399435 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 399471 399471 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1785 SAMTools SNP 399477 399477 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 402725 402725 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1785 SAMTools SNP 402751 402751 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1785 SAMTools SNP 402927 402927 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 403045 403045 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold1785 SAMTools SNP 403685 403685 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.089%2C0.00022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1785 SAMTools SNP 405874 405874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1785 SAMTools SNP 405949 405949 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C184:87 scaffold1785 SAMTools SNP 406492 406492 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0071%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C216:44 scaffold1785 SAMTools SNP 406594 406594 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 408412 408412 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1785 SAMTools SNP 410126 410126 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.26%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1785 SAMTools SNP 410128 410128 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.45%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1785 SAMTools SNP 414932 414932 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1785 SAMTools SNP 414938 414938 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1785 SAMTools SNP 415352 415352 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C154%2C0:99 scaffold1785 SAMTools SNP 424145 424145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1785 SAMTools SNP 424189 424189 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1785 SAMTools SNP 424338 424338 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1785 SAMTools SNP 424553 424553 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.011%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C50:53 scaffold1785 SAMTools SNP 425426 425426 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.023%2C2.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1785 SAMTools SNP 426084 426084 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1785 SAMTools SNP 426793 426793 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold1785 SAMTools SNP 426963 426963 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C33%2C0:63 scaffold1785 SAMTools SNP 428785 428785 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold1785 SAMTools SNP 429198 429198 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D33.9%3BPV4%3D1%2C1e-10%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C79:64 scaffold1785 SAMTools SNP 429232 429232 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C34%2C0%2C15%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.051%2C0.42%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1785 SAMTools SNP 429234 429234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1785 SAMTools SNP 429646 429646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 429793 429793 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1785 SAMTools SNP 430048 430048 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1785 SAMTools SNP 430060 430060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1785 SAMTools SNP 430186 430186 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold1785 SAMTools SNP 430234 430234 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C5%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.23%2C3.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1785 SAMTools SNP 432081 432081 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C32%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.36%2C2.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1785 SAMTools SNP 432478 432478 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 432551 432551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C41%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1785 SAMTools SNP 434364 434364 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C41:44 scaffold1785 SAMTools SNP 436325 436325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C181%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 437070 437070 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1785 SAMTools SNP 437235 437235 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C15%2C19%2C10%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.46%2C3.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1785 SAMTools SNP 437388 437388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C2%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1785 SAMTools SNP 437403 437403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 437814 437814 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C40%3BMQ%3D33%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 438302 438302 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C110%3BMQ%3D36%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 438615 438615 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0048%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1785 SAMTools SNP 439052 439052 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C22%2C0%2C16%3BMQ%3D33%3BFQ%3D-37%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C10%2C0:17 scaffold1785 SAMTools SNP 439100 439100 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1785 SAMTools SNP 439133 439133 65 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C157%2C246%2C0%2C228:69 scaffold1785 SAMTools SNP 440706 440706 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1785 SAMTools SNP 441089 441089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1785 SAMTools SNP 441601 441601 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C50%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.34%2C0.15%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1785 SAMTools SNP 441656 441656 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C107%2C0%2C49%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1785 SAMTools SNP 442325 442325 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C152:69 scaffold1785 SAMTools SNP 442360 442360 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1785 SAMTools SNP 442393 442393 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.35%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1785 SAMTools SNP 442746 442746 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1785 SAMTools SNP 442791 442791 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C7%2C17%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.025%2C2e-73%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1785 SAMTools SNP 442797 442797 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1785 SAMTools SNP 443221 443221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C55%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 443225 443225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C19%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 443323 443323 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C2%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.18%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1785 SAMTools SNP 444348 444348 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C26%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.9e-07%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 444423 444423 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C15%2C16%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C2.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1785 SAMTools SNP 444495 444495 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 444871 444871 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C36%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1785 SAMTools SNP 445242 445242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 445260 445260 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 445684 445684 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1785 SAMTools SNP 445965 445965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 448756 448756 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1785 SAMTools SNP 449572 449572 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.053%2C0.015%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1785 SAMTools SNP 449740 449740 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1785 SAMTools SNP 450369 450369 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1785 SAMTools SNP 450376 450376 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1785 SAMTools SNP 450452 450452 20.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1785 SAMTools SNP 450504 450504 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1785 SAMTools SNP 451856 451856 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.7%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1785 SAMTools SNP 451878 451878 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C30%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.6%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold1785 SAMTools SNP 457119 457119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 457140 457140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1785 SAMTools SNP 474150 474150 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C2.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C219:99 scaffold1785 SAMTools SNP 474726 474726 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C7%2C20%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.72%2C4.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1785 SAMTools SNP 475016 475016 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C107:30 scaffold1785 SAMTools SNP 475502 475502 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1785 SAMTools SNP 475541 475541 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.0093%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C113:75 scaffold1785 SAMTools SNP 479091 479091 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1785 SAMTools SNP 480173 480173 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 482524 482524 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1785 SAMTools SNP 482625 482625 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 485470 485470 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1785 SAMTools SNP 486342 486342 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1785 SAMTools SNP 487154 487154 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.46%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1785 SAMTools SNP 487682 487682 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1785 SAMTools SNP 487842 487842 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C209:43 scaffold1785 SAMTools SNP 488266 488266 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 489440 489440 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1785 SAMTools SNP 489466 489466 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1785 SAMTools SNP 489503 489503 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold1785 SAMTools SNP 489547 489547 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.24%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C146:99 scaffold1785 SAMTools SNP 490517 490517 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold1785 SAMTools SNP 491248 491248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 492603 492603 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1785 SAMTools SNP 498611 498611 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C100:99 scaffold1785 SAMTools SNP 498673 498673 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C21%2C0:39 scaffold1785 SAMTools SNP 501583 501583 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1785 SAMTools SNP 506328 506328 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 506329 506329 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 506699 506699 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 507235 507235 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1785 SAMTools SNP 507635 507635 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 507680 507680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 507721 507721 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.057%2C4.3e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1785 SAMTools SNP 507731 507731 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 508095 508095 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.29%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1785 SAMTools SNP 508533 508533 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 508698 508698 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 508801 508801 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.41%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold1785 SAMTools SNP 510639 510639 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 511564 511564 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1785 SAMTools SNP 512508 512508 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1785 SAMTools SNP 512802 512802 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1785 SAMTools SNP 512814 512814 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1785 SAMTools SNP 515939 515939 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1785 SAMTools SNP 522479 522479 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 522489 522489 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1785 SAMTools SNP 525910 525910 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 525937 525937 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 534645 534645 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 535064 535064 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 535201 535201 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 536165 536165 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1785 SAMTools SNP 536177 536177 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 536524 536524 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C113:37 scaffold1785 SAMTools SNP 536762 536762 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 539189 539189 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1785 SAMTools SNP 565507 565507 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 573446 573446 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C8%2C20%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.19%2C3e-07%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1785 SAMTools SNP 574672 574672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 574738 574738 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C40%2C4%2C28%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C4e-23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1785 SAMTools SNP 574888 574888 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C21%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.29%2C5.3e-18%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1785 SAMTools SNP 575248 575248 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.17%2C0.0033%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C144:83 scaffold1785 SAMTools SNP 575473 575473 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1785 SAMTools SNP 577588 577588 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C7.2e-06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold1785 SAMTools SNP 577963 577963 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 578233 578233 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C2.6e-14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C232:66 scaffold1785 SAMTools SNP 659218 659218 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1785 SAMTools SNP 660706 660706 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 660776 660776 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1785 SAMTools SNP 660790 660790 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold1785 SAMTools SNP 661044 661044 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C54%2C0:97 scaffold1785 SAMTools SNP 661127 661127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 661425 661425 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 661476 661476 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C127:93 scaffold1785 SAMTools SNP 661766 661766 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 661973 661973 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 661995 661995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1785 SAMTools SNP 662048 662048 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C17%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.6%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1785 SAMTools SNP 662245 662245 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1785 SAMTools SNP 662569 662569 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 662653 662653 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1785 SAMTools SNP 662789 662789 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1785 SAMTools SNP 662811 662811 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 663058 663058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 663478 663478 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C205:99 scaffold1785 SAMTools SNP 663493 663493 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.14%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold1785 SAMTools SNP 663706 663706 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold1785 SAMTools SNP 664004 664004 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C8%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D9.4e-08%2C6.2e-11%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1785 SAMTools SNP 664025 664025 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C33%2C0:63 scaffold1785 SAMTools SNP 664193 664193 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C3%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.028%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1785 SAMTools SNP 664555 664555 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.012%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1785 SAMTools SNP 667048 667048 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1785 SAMTools SNP 667056 667056 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0241%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 667123 667123 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 667139 667139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 667155 667155 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 667381 667381 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C47%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C166%2C0:99 scaffold1785 SAMTools SNP 667685 667685 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1785 SAMTools SNP 668006 668006 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C3%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.32%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1785 SAMTools SNP 668099 668099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1785 SAMTools SNP 668384 668384 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1785 SAMTools SNP 668499 668499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 668980 668980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 670807 670807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 670810 670810 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1785 SAMTools SNP 670831 670831 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold1785 SAMTools SNP 670894 670894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1785 SAMTools SNP 671435 671435 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C0.0016%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1785 SAMTools SNP 671759 671759 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C29%2C47%2C0%3BMQ%3D34%3BFQ%3D49%3BPV4%3D2.9e-07%2C2.9e-09%2C2.2e-05%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1785 SAMTools SNP 671861 671861 67.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C40%2C11%2C38%3BMQ%3D36%3BFQ%3D-39%3BPV4%3D0.00086%2C1.5e-107%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold1785 SAMTools SNP 672170 672170 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C25%2C3%3BMQ%3D47%3BFQ%3D43%3BPV4%3D9.8e-05%2C2.2e-18%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1785 SAMTools SNP 684121 684121 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1785 SAMTools SNP 733598 733598 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1785 SAMTools SNP 735020 735020 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1785 SAMTools SNP 735086 735086 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C36%2C0:69 scaffold1785 SAMTools SNP 735688 735688 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.14%2C0.00023%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C121:57 scaffold1785 SAMTools SNP 748952 748952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1785 SAMTools SNP 749249 749249 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold1785 SAMTools SNP 749266 749266 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1785 SAMTools SNP 749285 749285 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 749820 749820 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C17:20 scaffold1785 SAMTools SNP 749875 749875 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1785 SAMTools SNP 750493 750493 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1785 SAMTools SNP 751364 751364 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1785 SAMTools SNP 751390 751390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1785 SAMTools SNP 751782 751782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 752236 752236 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1785 SAMTools SNP 752239 752239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1785 SAMTools SNP 752671 752671 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C147:99 scaffold1785 SAMTools SNP 752842 752842 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1785 SAMTools SNP 752938 752938 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1785 SAMTools SNP 753245 753245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1785 SAMTools SNP 754684 754684 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1785 SAMTools SNP 754980 754980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1785 SAMTools SNP 755464 755464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1785 SAMTools SNP 755512 755512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1785 SAMTools SNP 756173 756173 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1785 SAMTools SNP 756186 756186 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1785 SAMTools SNP 757102 757102 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 758323 758323 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.43%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1785 SAMTools SNP 769471 769471 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00067%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1785 SAMTools SNP 769648 769648 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C103%2C61%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-15%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 770032 770032 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C142%2C124%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 771787 771787 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold1785 SAMTools SNP 774647 774647 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C17:20 scaffold1785 SAMTools SNP 774692 774692 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0:51 scaffold1785 SAMTools SNP 774770 774770 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1785 SAMTools SNP 774793 774793 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1785 SAMTools SNP 775385 775385 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1785 SAMTools SNP 775929 775929 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.14%2C0.0046%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C184:30 scaffold1785 SAMTools SNP 777307 777307 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold1785 SAMTools SNP 777593 777593 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 778425 778425 8.66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D15%3BFQ%3D-52%3BPV4%3D1%2C1.9e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C25%2C0:30 scaffold1785 SAMTools SNP 780438 780438 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C1.6e-06%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold1785 SAMTools SNP 780444 780444 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1785 SAMTools SNP 780975 780975 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.045%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C235:53 scaffold1785 SAMTools SNP 780979 780979 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.045%2C0.011%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C247:53 scaffold1785 SAMTools SNP 781045 781045 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1785 SAMTools SNP 794575 794575 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C2.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C102:79 scaffold1785 SAMTools SNP 794769 794769 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C211:47 scaffold1785 SAMTools SNP 794990 794990 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold1785 SAMTools SNP 796001 796001 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C220:72 scaffold1785 SAMTools SNP 799164 799164 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C254:99 scaffold1785 SAMTools SNP 799384 799384 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1785 SAMTools SNP 799417 799417 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1785 SAMTools SNP 802526 802526 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.18%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 803067 803067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 803762 803762 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1785 SAMTools SNP 803966 803966 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold1785 SAMTools SNP 805057 805057 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0048%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.47%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1785 SAMTools SNP 806249 806249 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold1785 SAMTools SNP 807107 807107 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold1785 SAMTools SNP 807775 807775 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1785 SAMTools SNP 808741 808741 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1785 SAMTools SNP 808743 808743 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1785 SAMTools SNP 809320 809320 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D42.3%3BPV4%3D0.47%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C74:72 scaffold1785 SAMTools SNP 810149 810149 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1785 SAMTools SNP 812808 812808 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 813979 813979 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1785 SAMTools SNP 819575 819575 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0026%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1785 SAMTools SNP 819581 819581 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 826888 826888 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 828436 828436 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.21%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C180:70 scaffold1785 SAMTools SNP 835842 835842 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1785 SAMTools SNP 838263 838263 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold1785 SAMTools SNP 838801 838801 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1785 SAMTools SNP 838825 838825 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1785 SAMTools SNP 839421 839421 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 839440 839440 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1785 SAMTools SNP 849524 849524 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C221:99 scaffold1785 SAMTools SNP 849551 849551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1785 SAMTools SNP 849606 849606 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1785 SAMTools SNP 854327 854327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 854333 854333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1785 SAMTools SNP 871502 871502 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1785 SAMTools SNP 872388 872388 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1785 SAMTools SNP 874905 874905 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1785 SAMTools SNP 874911 874911 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1785 SAMTools SNP 875508 875508 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 875517 875517 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 876275 876275 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.2%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C77:80 scaffold1785 SAMTools SNP 876303 876303 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.2%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C225:84 scaffold1785 SAMTools SNP 877680 877680 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold1785 SAMTools SNP 878002 878002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1785 SAMTools SNP 878032 878032 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1785 SAMTools SNP 878209 878209 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1785 SAMTools SNP 878260 878260 56.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold1785 SAMTools SNP 878293 878293 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C21%2C0:39 scaffold1785 SAMTools SNP 878501 878501 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1785 SAMTools SNP 878710 878710 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1785 SAMTools SNP 880447 880447 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C38:41 scaffold1785 SAMTools SNP 880920 880920 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 883079 883079 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D40%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C44:47 scaffold1785 SAMTools SNP 883330 883330 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold1785 SAMTools SNP 884376 884376 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D44%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C51%2C0:99 scaffold1785 SAMTools SNP 892811 892811 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1785 SAMTools SNP 897127 897127 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 897143 897143 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1785 SAMTools SNP 897152 897152 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1785 SAMTools SNP 897283 897283 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1785 SAMTools SNP 897905 897905 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.1e-27%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C205:47 scaffold1785 SAMTools SNP 898183 898183 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C34%2C9%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.046%2C0.054%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1785 SAMTools SNP 901383 901383 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 901458 901458 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C13%2C13%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1785 SAMTools SNP 901539 901539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C87%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.39%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 901563 901563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 902180 902180 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C62%2C7%2C42%3BMQ%3D50%3BFQ%3D192%3BPV4%3D2.3e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1785 SAMTools SNP 903659 903659 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C51%2C111%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C0.00096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 903695 903695 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C16%2C92%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 903701 903701 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C134%2C64%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C0.0044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1785 SAMTools SNP 904136 904136 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C331%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 904175 904175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C377%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 904925 904925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C283%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1785 SAMTools SNP 916212 916212 41.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1786 SAMTools SNP 7717 7717 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1786 SAMTools SNP 10595 10595 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C123%2C0:99 scaffold1786 SAMTools SNP 11285 11285 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C5%2C12%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C5.9e-47%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1786 SAMTools SNP 12064 12064 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold1786 SAMTools SNP 12271 12271 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C56%2C14%2C52%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.83%2C5.3e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1786 SAMTools SNP 90850 90850 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.64%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1786 SAMTools SNP 105904 105904 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1786 SAMTools SNP 106136 106136 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1786 SAMTools SNP 140095 140095 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C30%2C0:57 scaffold1786 SAMTools SNP 140503 140503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C3%2C20%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.057%2C0.33%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1786 SAMTools SNP 140522 140522 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C25%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C5.7e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C245:99 scaffold1786 SAMTools SNP 140532 140532 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C23%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C247:99 scaffold1786 SAMTools SNP 140584 140584 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1786 SAMTools SNP 140603 140603 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1786 SAMTools SNP 158958 158958 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold1786 SAMTools SNP 159939 159939 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1786 SAMTools SNP 166471 166471 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1786 SAMTools SNP 166520 166520 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0063%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1786 SAMTools SNP 166529 166529 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1786 SAMTools SNP 166530 166530 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1786 SAMTools SNP 196927 196927 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.083%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1786 SAMTools SNP 196941 196941 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1786 SAMTools SNP 196954 196954 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.077%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1786 SAMTools SNP 201756 201756 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C66%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C223%2C0:99 scaffold1786 SAMTools SNP 201769 201769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C71%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1786 SAMTools SNP 202400 202400 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1786 SAMTools SNP 202809 202809 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.023%2C0.00012%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1786 SAMTools SNP 204697 204697 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C49%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.024%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1786 SAMTools SNP 205137 205137 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C5%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1786 SAMTools SNP 205164 205164 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D8.2e-05%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1786 SAMTools SNP 205710 205710 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C39%2C1%2C18%3BMQ%3D50%3BFQ%3D40%3BPV4%3D2.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1786 SAMTools SNP 207072 207072 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C12%2C7%2C5%3BMQ%3D48%3BFQ%3D17.1%3BPV4%3D0.027%2C0.00024%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1786 SAMTools SNP 207674 207674 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C16%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.00055%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1786 SAMTools SNP 208651 208651 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold1786 SAMTools SNP 208742 208742 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C48%2C0:93 scaffold1786 SAMTools SNP 208784 208784 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C27%2C0:49 scaffold1786 SAMTools SNP 209576 209576 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1788 SAMTools SNP 1186 1186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1788 SAMTools SNP 3444 3444 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1788 SAMTools SNP 3456 3456 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold1788 SAMTools SNP 44644 44644 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 44675 44675 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 127471 127471 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1788 SAMTools SNP 127489 127489 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1788 SAMTools SNP 127685 127685 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 127694 127694 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.021%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1788 SAMTools SNP 127923 127923 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1788 SAMTools SNP 127965 127965 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.027%2C0.044%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1788 SAMTools SNP 128417 128417 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1788 SAMTools SNP 128752 128752 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1788 SAMTools SNP 129265 129265 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 129502 129502 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1788 SAMTools SNP 129833 129833 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C30%2C0:57 scaffold1788 SAMTools SNP 133098 133098 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1788 SAMTools SNP 135713 135713 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C99%2C0:99 scaffold1788 SAMTools SNP 136457 136457 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1788 SAMTools SNP 136866 136866 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.31%2C0.39%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1788 SAMTools SNP 140970 140970 15.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D18%3BFQ%3D-32%3BPV4%3D0.46%2C0.29%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C5%2C0:8 scaffold1788 SAMTools SNP 141103 141103 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D13%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C45%2C0:59 scaffold1788 SAMTools SNP 141136 141136 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D23%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C57%2C0:99 scaffold1788 SAMTools SNP 141428 141428 80.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C13%2C4%3BMQ%3D19%3BFQ%3D-37%3BPV4%3D0.12%2C0.12%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C10%2C0:17 scaffold1788 SAMTools SNP 141703 141703 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C14%2C0%3BMQ%3D27%3BFQ%3D28%3BPV4%3D0.069%2C1%2C0.067%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C240:58 scaffold1788 SAMTools SNP 141723 141723 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D0.035%2C0.0034%2C0.00073%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1788 SAMTools SNP 141740 141740 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C66:52 scaffold1788 SAMTools SNP 146845 146845 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C24%2C0:45 scaffold1788 SAMTools SNP 147288 147288 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1788 SAMTools SNP 147995 147995 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C174:74 scaffold1788 SAMTools SNP 151737 151737 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C75%2C0:99 scaffold1788 SAMTools SNP 151863 151863 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1788 SAMTools SNP 154835 154835 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.66%2C6.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1788 SAMTools SNP 154880 154880 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C240:99 scaffold1788 SAMTools SNP 155602 155602 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.8e-15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C225:55 scaffold1788 SAMTools SNP 160573 160573 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1788 SAMTools SNP 161524 161524 8.22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1788 SAMTools SNP 162158 162158 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold1788 SAMTools SNP 162181 162181 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C57%2C0:99 scaffold1788 SAMTools SNP 162930 162930 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.19%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1788 SAMTools SNP 163372 163372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C28%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 163390 163390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C18%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1788 SAMTools SNP 163420 163420 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1788 SAMTools SNP 163483 163483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 163966 163966 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold1788 SAMTools SNP 164032 164032 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.61%2C2.9e-05%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C206:99 scaffold1788 SAMTools SNP 164465 164465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 164489 164489 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1788 SAMTools SNP 164659 164659 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1788 SAMTools SNP 164863 164863 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1788 SAMTools SNP 164899 164899 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0024%2C0.093%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1788 SAMTools SNP 168647 168647 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C0.16%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1788 SAMTools SNP 168749 168749 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 169062 169062 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C200:99 scaffold1788 SAMTools SNP 169696 169696 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.38%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1788 SAMTools SNP 169713 169713 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.047%2C0.22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1788 SAMTools SNP 176329 176329 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 176332 176332 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1788 SAMTools SNP 177903 177903 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1788 SAMTools SNP 178825 178825 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1788 SAMTools SNP 178920 178920 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1788 SAMTools SNP 178993 178993 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1788 SAMTools SNP 180579 180579 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 180917 180917 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.47%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C182:99 scaffold1788 SAMTools SNP 180966 180966 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1788 SAMTools SNP 181213 181213 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1788 SAMTools SNP 181280 181280 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1788 SAMTools SNP 181478 181478 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold1788 SAMTools SNP 181502 181502 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1788 SAMTools SNP 181727 181727 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1788 SAMTools SNP 181772 181772 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1788 SAMTools SNP 181787 181787 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1788 SAMTools SNP 182079 182079 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C23%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1788 SAMTools SNP 182329 182329 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.005%2C0.17%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1788 SAMTools SNP 182368 182368 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1788 SAMTools SNP 182645 182645 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1788 SAMTools SNP 182681 182681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1788 SAMTools SNP 182720 182720 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold1788 SAMTools SNP 186668 186668 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C24%2C0:45 scaffold1788 SAMTools SNP 187685 187685 40.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1788 SAMTools SNP 189490 189490 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C32%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C8.3e-27%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C248:99 scaffold1788 SAMTools SNP 194497 194497 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 194505 194505 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 199591 199591 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1788 SAMTools SNP 204505 204505 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1788 SAMTools SNP 218934 218934 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 220875 220875 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 225808 225808 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1788 SAMTools SNP 226310 226310 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold1788 SAMTools SNP 226779 226779 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold1788 SAMTools SNP 226839 226839 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1788 SAMTools SNP 226893 226893 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1788 SAMTools SNP 227376 227376 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 227978 227978 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 228496 228496 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1788 SAMTools SNP 228539 228539 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 228550 228550 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1788 SAMTools SNP 228763 228763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 229394 229394 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1788 SAMTools SNP 229646 229646 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 229709 229709 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 230725 230725 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1788 SAMTools SNP 230749 230749 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold1788 SAMTools SNP 231150 231150 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C27%2C0:51 scaffold1788 SAMTools SNP 232504 232504 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 234193 234193 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1788 SAMTools SNP 234194 234194 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 234572 234572 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1788 SAMTools SNP 234810 234810 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C38:41 scaffold1788 SAMTools SNP 238095 238095 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C4%3BMQ%3D48%3BFQ%3D110%3BPV4%3D1%2C0.22%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1788 SAMTools SNP 240588 240588 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 242373 242373 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1788 SAMTools SNP 242831 242831 64.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold1788 SAMTools SNP 249934 249934 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1788 SAMTools SNP 256576 256576 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.022%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1788 SAMTools SNP 256579 256579 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.048%2C0.025%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold1788 SAMTools SNP 256604 256604 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1788 SAMTools SNP 256688 256688 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1788 SAMTools SNP 262786 262786 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1788 SAMTools SNP 262847 262847 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.22%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1788 SAMTools SNP 268735 268735 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C76:79 scaffold1788 SAMTools SNP 268759 268759 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C0.4%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C148:99 scaffold1788 SAMTools SNP 270041 270041 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1788 SAMTools SNP 270050 270050 10.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1788 SAMTools SNP 279836 279836 18.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold1788 SAMTools SNP 279957 279957 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C77:80 scaffold1788 SAMTools SNP 282952 282952 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C13%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.43%2C6.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1788 SAMTools SNP 283221 283221 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.14%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C169:99 scaffold1788 SAMTools SNP 283418 283418 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1788 SAMTools SNP 283445 283445 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C5%3BMQ%3D47%3BFQ%3D163%3BPV4%3D0.64%2C1%2C0.052%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1788 SAMTools SNP 284031 284031 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C11%2C8%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.77%2C0.5%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1788 SAMTools SNP 290949 290949 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C17%3BMQ%3D49%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1788 SAMTools SNP 294163 294163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C33%2C50%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 294181 294181 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C39%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.0017%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 294183 294183 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C41%2C19%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 297344 297344 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 298138 298138 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1788 SAMTools SNP 298220 298220 163 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C237:99 scaffold1788 SAMTools SNP 301061 301061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1788 SAMTools SNP 302505 302505 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1788 SAMTools SNP 302631 302631 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1788 SAMTools SNP 305120 305120 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C29%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1788 SAMTools SNP 308041 308041 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1788 SAMTools SNP 314536 314536 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 316805 316805 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1788 SAMTools SNP 320011 320011 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1788 SAMTools SNP 336237 336237 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1788 SAMTools SNP 336552 336552 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.11%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1788 SAMTools SNP 336576 336576 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1788 SAMTools SNP 336820 336820 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1788 SAMTools SNP 337105 337105 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D214%3BPV4%3D2.2e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1788 SAMTools SNP 337249 337249 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C6.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 337577 337577 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1788 SAMTools SNP 338240 338240 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1788 SAMTools SNP 339317 339317 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1788 SAMTools SNP 339434 339434 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C10%2C55%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C8e-13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 340051 340051 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C0%2C15%3BMQ%3D50%3BFQ%3D152%3BPV4%3D5.8e-06%2C0.45%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1788 SAMTools SNP 340060 340060 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C7.9e-19%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 340135 340135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C29%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1788 SAMTools SNP 342312 342312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 342586 342586 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C229:69 scaffold1788 SAMTools SNP 342714 342714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 343107 343107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1788 SAMTools SNP 343185 343185 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C26%2C8%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.56%2C4.5e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1788 SAMTools SNP 343286 343286 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1788 SAMTools SNP 343298 343298 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1788 SAMTools SNP 344131 344131 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C73:53 scaffold1788 SAMTools SNP 344609 344609 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold1788 SAMTools SNP 344645 344645 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1788 SAMTools SNP 344657 344657 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1788 SAMTools SNP 344662 344662 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.13%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1788 SAMTools SNP 345019 345019 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1788 SAMTools SNP 347886 347886 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1788 SAMTools SNP 347895 347895 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1788 SAMTools SNP 347913 347913 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 368001 368001 81.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C18%2C0:33 scaffold1788 SAMTools SNP 368112 368112 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C44%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C172%2C0:99 scaffold1788 SAMTools SNP 368150 368150 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C12%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C3.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1788 SAMTools SNP 368870 368870 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1788 SAMTools SNP 379163 379163 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1788 SAMTools SNP 384503 384503 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1788 SAMTools SNP 385888 385888 36.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1788 SAMTools SNP 387816 387816 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1788 SAMTools SNP 387884 387884 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 390978 390978 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C222:99 scaffold1788 SAMTools SNP 391029 391029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1788 SAMTools SNP 392286 392286 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C7%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 393096 393096 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C43%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1788 SAMTools SNP 393162 393162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1788 SAMTools SNP 409416 409416 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.076%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 409944 409944 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1788 SAMTools SNP 410311 410311 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1788 SAMTools SNP 410760 410760 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C18%2C0:33 scaffold1788 SAMTools SNP 410793 410793 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold1788 SAMTools SNP 413004 413004 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1788 SAMTools SNP 413005 413005 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1788 SAMTools SNP 413035 413035 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 413047 413047 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1788 SAMTools SNP 413828 413828 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1788 SAMTools SNP 413873 413873 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1788 SAMTools SNP 415242 415242 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1788 SAMTools SNP 416385 416385 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1788 SAMTools SNP 418327 418327 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1788 SAMTools SNP 418566 418566 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C164:99 scaffold1788 SAMTools SNP 419027 419027 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.15%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1788 SAMTools SNP 419353 419353 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1788 SAMTools SNP 421050 421050 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C0%2C5%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D0.00082%2C0.12%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1788 SAMTools SNP 421345 421345 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C11%2C4%3BMQ%3D47%3BFQ%3D193%3BPV4%3D0.0024%2C0.36%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1788 SAMTools SNP 421987 421987 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1788 SAMTools SNP 422152 422152 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C1%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1788 SAMTools SNP 422153 422153 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C1%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1788 SAMTools SNP 427018 427018 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1788 SAMTools SNP 430748 430748 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1788 SAMTools SNP 431140 431140 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 431659 431659 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1788 SAMTools SNP 431966 431966 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold1788 SAMTools SNP 431977 431977 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1788 SAMTools SNP 432090 432090 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1788 SAMTools SNP 432110 432110 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1788 SAMTools SNP 443315 443315 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1788 SAMTools SNP 449773 449773 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1788 SAMTools SNP 449779 449779 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1788 SAMTools SNP 453328 453328 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1788 SAMTools SNP 453816 453816 30.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1788 SAMTools SNP 454130 454130 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1788 SAMTools SNP 455556 455556 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 456124 456124 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1788 SAMTools SNP 456311 456311 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1788 SAMTools SNP 456368 456368 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1788 SAMTools SNP 456809 456809 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 456847 456847 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold1788 SAMTools SNP 456939 456939 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1788 SAMTools SNP 456967 456967 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1788 SAMTools SNP 457728 457728 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C3.7e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold1788 SAMTools SNP 457752 457752 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C67:70 scaffold1788 SAMTools SNP 457758 457758 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1788 SAMTools SNP 457776 457776 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1788 SAMTools SNP 458507 458507 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 458518 458518 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 461143 461143 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1788 SAMTools SNP 462181 462181 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C1.1e-10%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C47%2C0:76 scaffold1788 SAMTools SNP 463675 463675 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C256%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1788 SAMTools SNP 463935 463935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C60%2C10%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 464523 464523 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1788 SAMTools SNP 464542 464542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1788 SAMTools SNP 465233 465233 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1788 SAMTools SNP 465242 465242 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1788 SAMTools SNP 465998 465998 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C24%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold1788 SAMTools SNP 466016 466016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 466049 466049 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C6%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1.6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1788 SAMTools SNP 466846 466846 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.48%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 468340 468340 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1788 SAMTools SNP 469837 469837 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1788 SAMTools SNP 472401 472401 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.011%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C217:55 scaffold1788 SAMTools SNP 472598 472598 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 472611 472611 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 472889 472889 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 476886 476886 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C62%2C0%2C23%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C248:99 scaffold1788 SAMTools SNP 481472 481472 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1788 SAMTools SNP 491576 491576 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C7.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C195:46 scaffold1788 SAMTools SNP 491585 491585 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.9e-11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C211:46 scaffold1788 SAMTools SNP 494223 494223 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1788 SAMTools SNP 494325 494325 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1788 SAMTools SNP 496147 496147 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1788 SAMTools SNP 496830 496830 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1788 SAMTools SNP 497927 497927 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1788 SAMTools SNP 499953 499953 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0089%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 500666 500666 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1788 SAMTools SNP 500692 500692 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold1788 SAMTools SNP 501036 501036 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 501054 501054 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C10%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.44%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1788 SAMTools SNP 501921 501921 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1788 SAMTools SNP 502133 502133 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1788 SAMTools SNP 502202 502202 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1788 SAMTools SNP 502274 502274 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold1788 SAMTools SNP 503894 503894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C12%2C2%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 504271 504271 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold1788 SAMTools SNP 504274 504274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1788 SAMTools SNP 506399 506399 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C14%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.6%2C0.32%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 506426 506426 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C9%3BMQ%3D41%3BFQ%3D112%3BPV4%3D0.057%2C0.33%2C0.0014%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1788 SAMTools SNP 506459 506459 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1788 SAMTools SNP 506609 506609 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1788 SAMTools SNP 507127 507127 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1788 SAMTools SNP 507163 507163 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C226:99 scaffold1788 SAMTools SNP 507492 507492 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.087%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1788 SAMTools SNP 507578 507578 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold1788 SAMTools SNP 507810 507810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1788 SAMTools SNP 508130 508130 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1788 SAMTools SNP 509228 509228 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C52%2C11%2C73%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.79%2C1.7e-98%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1788 SAMTools SNP 509531 509531 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 510284 510284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1788 SAMTools SNP 510614 510614 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1788 SAMTools SNP 512448 512448 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D1%2C0.00013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C77:62 scaffold1788 SAMTools SNP 515016 515016 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1788 SAMTools SNP 515059 515059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C24%2C93%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 530618 530618 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1788 SAMTools SNP 532085 532085 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold1788 SAMTools SNP 532175 532175 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1788 SAMTools SNP 532648 532648 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 532945 532945 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C230:99 scaffold1788 SAMTools SNP 533214 533214 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1788 SAMTools SNP 533404 533404 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1788 SAMTools SNP 533512 533512 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1788 SAMTools SNP 535071 535071 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C21%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.47%2C2.5e-48%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1788 SAMTools SNP 535205 535205 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C60%2C0:99 scaffold1788 SAMTools SNP 535765 535765 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.14%2C0.047%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C228:99 scaffold1788 SAMTools SNP 535943 535943 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1788 SAMTools SNP 536212 536212 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1788 SAMTools SNP 536405 536405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1788 SAMTools SNP 536420 536420 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1788 SAMTools SNP 536473 536473 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C206:99 scaffold1788 SAMTools SNP 536758 536758 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1788 SAMTools SNP 536796 536796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1788 SAMTools SNP 538221 538221 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1788 SAMTools SNP 538481 538481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C23%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1788 SAMTools SNP 539188 539188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1788 SAMTools SNP 539200 539200 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1788 SAMTools SNP 539621 539621 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1788 SAMTools SNP 539694 539694 59.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0018%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C3%2C23%2C4%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.0086%2C9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C6:9 scaffold1788 SAMTools SNP 539743 539743 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C302%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1788 SAMTools SNP 539899 539899 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1788 SAMTools SNP 540144 540144 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C2%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1788 SAMTools SNP 540607 540607 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C20%3BMQ%3D50%3BFQ%3D-123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1788 SAMTools SNP 540797 540797 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C19%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 540803 540803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C23%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1788 SAMTools SNP 543861 543861 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1788 SAMTools SNP 544918 544918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1788 SAMTools SNP 544948 544948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0044%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 545158 545158 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C248:99 scaffold1788 SAMTools SNP 545676 545676 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold1788 SAMTools SNP 545687 545687 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.032%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C243:99 scaffold1788 SAMTools SNP 546196 546196 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1788 SAMTools SNP 546204 546204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold1788 SAMTools SNP 546418 546418 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1788 SAMTools SNP 546426 546426 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C14%2C18%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1788 SAMTools SNP 546549 546549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1788 SAMTools SNP 546575 546575 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1788 SAMTools SNP 546615 546615 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.12%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold1788 SAMTools SNP 547202 547202 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1788 SAMTools SNP 548482 548482 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1788 SAMTools SNP 548732 548732 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C117%2C0:99 scaffold1788 SAMTools SNP 548788 548788 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C78%2C0:99 scaffold1788 SAMTools SNP 548858 548858 33.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1788 SAMTools SNP 549083 549083 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold1788 SAMTools SNP 549193 549193 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C32%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.097%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1788 SAMTools SNP 549568 549568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1788 SAMTools SNP 549660 549660 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C8%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1788 SAMTools SNP 551013 551013 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C22%2C154%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 551054 551054 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C46%2C47%2C1%3BMQ%3D49%3BFQ%3D194%3BPV4%3D3e-08%2C0.24%2C0.0076%2C7.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1788 SAMTools SNP 552379 552379 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold1788 SAMTools SNP 552436 552436 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold1788 SAMTools SNP 552659 552659 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1788 SAMTools SNP 552994 552994 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C43%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1788 SAMTools SNP 553180 553180 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C42%2C0:81 scaffold1788 SAMTools SNP 553200 553200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1788 SAMTools SNP 553536 553536 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1788 SAMTools SNP 553609 553609 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.019%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1788 SAMTools SNP 554565 554565 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.21%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1788 SAMTools SNP 554921 554921 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.2%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 555356 555356 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1788 SAMTools SNP 555620 555620 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C237:99 scaffold1788 SAMTools SNP 577921 577921 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1788 SAMTools SNP 581565 581565 47.5 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C35%2C23%2C79%2C0%2C73:21 scaffold179 SAMTools SNP 25745 25745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold179 SAMTools SNP 25814 25814 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold179 SAMTools SNP 54910 54910 12 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold179 SAMTools SNP 56226 56226 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold179 SAMTools SNP 76189 76189 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold179 SAMTools SNP 80596 80596 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold179 SAMTools SNP 81112 81112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C35%2C113%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold179 SAMTools SNP 89065 89065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold179 SAMTools SNP 89074 89074 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold179 SAMTools SNP 89112 89112 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold179 SAMTools SNP 91874 91874 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold179 SAMTools SNP 95515 95515 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C163:55 scaffold179 SAMTools SNP 95540 95540 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.33%2C0.0051%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C176:69 scaffold179 SAMTools SNP 107407 107407 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold179 SAMTools SNP 109024 109024 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold179 SAMTools SNP 109204 109204 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold179 SAMTools SNP 113145 113145 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold179 SAMTools SNP 115079 115079 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold179 SAMTools SNP 115099 115099 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold179 SAMTools SNP 115435 115435 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold179 SAMTools SNP 122431 122431 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold179 SAMTools SNP 127916 127916 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C14%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.17%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C226:99 scaffold179 SAMTools SNP 160133 160133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 13774 13774 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C90%2C0:99 scaffold1791 SAMTools SNP 13873 13873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C105%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1791 SAMTools SNP 14264 14264 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C31%2C5%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1791 SAMTools SNP 14289 14289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C15%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1791 SAMTools SNP 14291 14291 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C36%2C5%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1791 SAMTools SNP 14324 14324 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C31%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1791 SAMTools SNP 14369 14369 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1791 SAMTools SNP 14732 14732 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C32%2C49%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1791 SAMTools SNP 15187 15187 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C27%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1791 SAMTools SNP 15265 15265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C45%2C58%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1791 SAMTools SNP 19324 19324 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1791 SAMTools SNP 23962 23962 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1791 SAMTools SNP 23969 23969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1791 SAMTools SNP 24504 24504 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1791 SAMTools SNP 24512 24512 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1791 SAMTools SNP 24587 24587 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C33%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1791 SAMTools SNP 24915 24915 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C16%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1791 SAMTools SNP 24960 24960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1791 SAMTools SNP 25430 25430 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold1791 SAMTools SNP 34750 34750 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C73%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C220%2C0:99 scaffold1791 SAMTools SNP 35116 35116 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 66959 66959 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C0%2C22%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D9.3e-06%2C5.5e-13%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1791 SAMTools SNP 67189 67189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C22%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1791 SAMTools SNP 67838 67838 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C6%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C157%2C0:99 scaffold1791 SAMTools SNP 68503 68503 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C68%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C238%2C0:99 scaffold1791 SAMTools SNP 68590 68590 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1791 SAMTools SNP 68776 68776 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C8%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C253%2C0:99 scaffold1791 SAMTools SNP 68908 68908 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C177%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1791 SAMTools SNP 69082 69082 4.78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0093%3BAF1%3D0.5011%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-5.74%3BPV4%3D1%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C23:28 scaffold1791 SAMTools SNP 70710 70710 18.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1791 SAMTools SNP 72057 72057 34.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold1791 SAMTools SNP 73317 73317 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1791 SAMTools SNP 76640 76640 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 76712 76712 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1791 SAMTools SNP 82173 82173 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1791 SAMTools SNP 83763 83763 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1791 SAMTools SNP 84878 84878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1791 SAMTools SNP 84914 84914 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1791 SAMTools SNP 86307 86307 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1791 SAMTools SNP 86734 86734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1791 SAMTools SNP 88107 88107 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1791 SAMTools SNP 88140 88140 121 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C47%2C35%2C148%2C0%2C145:21 scaffold1791 SAMTools SNP 97631 97631 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0069%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold1791 SAMTools SNP 106526 106526 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1791 SAMTools SNP 106553 106553 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1791 SAMTools SNP 107541 107541 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1791 SAMTools SNP 107552 107552 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1791 SAMTools SNP 107786 107786 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1791 SAMTools SNP 108732 108732 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1791 SAMTools SNP 108748 108748 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1791 SAMTools SNP 108750 108750 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1791 SAMTools SNP 109364 109364 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1791 SAMTools SNP 111945 111945 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C41:42 scaffold1791 SAMTools SNP 115623 115623 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1791 SAMTools SNP 115904 115904 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold1791 SAMTools SNP 131883 131883 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 132953 132953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 133168 133168 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1791 SAMTools SNP 133215 133215 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1791 SAMTools SNP 133712 133712 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1791 SAMTools SNP 133728 133728 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1791 SAMTools SNP 144599 144599 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1791 SAMTools SNP 146656 146656 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1791 SAMTools SNP 146694 146694 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1791 SAMTools SNP 147184 147184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1791 SAMTools SNP 147235 147235 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1791 SAMTools SNP 147245 147245 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1791 SAMTools SNP 147397 147397 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C0.011%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1791 SAMTools SNP 147920 147920 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1791 SAMTools SNP 148008 148008 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1791 SAMTools SNP 148531 148531 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1791 SAMTools SNP 148533 148533 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1791 SAMTools SNP 148615 148615 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1791 SAMTools SNP 148869 148869 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1791 SAMTools SNP 148890 148890 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold1791 SAMTools SNP 151520 151520 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C3%3BMQ%3D49%3BFQ%3D189%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1791 SAMTools SNP 151526 151526 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C17%3BMQ%3D47%3BFQ%3D-64%3BPV4%3D0.41%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1791 SAMTools SNP 151956 151956 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C9%2C1%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.63%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1791 SAMTools SNP 151958 151958 187 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1791 SAMTools SNP 151980 151980 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C3%3BMQ%3D48%3BFQ%3D158%3BPV4%3D1%2C1%2C0.15%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C247:99 scaffold1791 SAMTools SNP 153651 153651 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1791 SAMTools SNP 153675 153675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D47%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1791 SAMTools SNP 153865 153865 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C63%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C2.1e-53%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1791 SAMTools SNP 153939 153939 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C46%2C57%2C62%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1.1e-159%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1791 SAMTools SNP 186491 186491 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1791 SAMTools SNP 186542 186542 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1792 SAMTools SNP 1425 1425 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 1459 1459 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 1511 1511 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 6723 6723 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold1792 SAMTools SNP 6793 6793 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1792 SAMTools SNP 6895 6895 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 6913 6913 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 7204 7204 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C5%2C66%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.6e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 7406 7406 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C8%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 7665 7665 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1792 SAMTools SNP 7683 7683 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1792 SAMTools SNP 9992 9992 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1792 SAMTools SNP 11888 11888 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1792 SAMTools SNP 14928 14928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1792 SAMTools SNP 14966 14966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1792 SAMTools SNP 26754 26754 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 27491 27491 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1792 SAMTools SNP 27537 27537 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold1792 SAMTools SNP 28246 28246 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 28468 28468 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 29262 29262 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1792 SAMTools SNP 29265 29265 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1792 SAMTools SNP 32549 32549 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C74:77 scaffold1792 SAMTools SNP 32580 32580 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold1792 SAMTools SNP 32838 32838 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold1792 SAMTools SNP 34245 34245 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 34502 34502 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1792 SAMTools SNP 34533 34533 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1792 SAMTools SNP 35198 35198 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold1792 SAMTools SNP 36127 36127 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1792 SAMTools SNP 38319 38319 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C16%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 38343 38343 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1792 SAMTools SNP 41763 41763 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C2%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1792 SAMTools SNP 41963 41963 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.013%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 41978 41978 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C48%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1792 SAMTools SNP 43244 43244 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C2%2C30%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.5%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1792 SAMTools SNP 43292 43292 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1792 SAMTools SNP 44783 44783 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 46687 46687 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-65%3BPV4%3D1%2C8.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C38%2C0:73 scaffold1792 SAMTools SNP 47125 47125 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.028%2C2.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C201:85 scaffold1792 SAMTools SNP 47395 47395 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C0:57 scaffold1792 SAMTools SNP 47531 47531 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C7.7e-07%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C132:44 scaffold1792 SAMTools SNP 48552 48552 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.18%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C248:99 scaffold1792 SAMTools SNP 49154 49154 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1792 SAMTools SNP 49546 49546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1792 SAMTools SNP 49558 49558 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C238:46 scaffold1792 SAMTools SNP 57011 57011 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1792 SAMTools SNP 59314 59314 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1792 SAMTools SNP 59538 59538 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1792 SAMTools SNP 62471 62471 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1792 SAMTools SNP 62885 62885 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1792 SAMTools SNP 63107 63107 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1792 SAMTools SNP 78566 78566 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1792 SAMTools SNP 94969 94969 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1792 SAMTools SNP 95089 95089 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1792 SAMTools SNP 95615 95615 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1792 SAMTools SNP 97021 97021 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1792 SAMTools SNP 97063 97063 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1792 SAMTools SNP 104289 104289 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1792 SAMTools SNP 104349 104349 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1792 SAMTools SNP 107866 107866 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1792 SAMTools SNP 107875 107875 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1792 SAMTools SNP 107893 107893 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.11%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C205:61 scaffold1792 SAMTools SNP 107935 107935 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 111489 111489 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C223:99 scaffold1792 SAMTools SNP 111630 111630 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1792 SAMTools SNP 117264 117264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1792 SAMTools SNP 117394 117394 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.8e-09%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C63:66 scaffold1792 SAMTools SNP 124329 124329 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C238:99 scaffold1792 SAMTools SNP 135930 135930 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C52%2C19%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 151033 151033 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.00016%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C196:74 scaffold1792 SAMTools SNP 151095 151095 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold1792 SAMTools SNP 151765 151765 17.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold1792 SAMTools SNP 151855 151855 45.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold1792 SAMTools SNP 157609 157609 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1792 SAMTools SNP 157705 157705 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1792 SAMTools SNP 161050 161050 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1792 SAMTools SNP 162552 162552 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1792 SAMTools SNP 163967 163967 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1792 SAMTools SNP 167403 167403 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1792 SAMTools SNP 167444 167444 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1792 SAMTools SNP 170670 170670 37.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C2%2C0:5 scaffold1792 SAMTools SNP 175657 175657 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 176103 176103 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1792 SAMTools SNP 176148 176148 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1792 SAMTools SNP 176176 176176 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1792 SAMTools SNP 180514 180514 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1792 SAMTools SNP 180733 180733 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C2%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.08%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1792 SAMTools SNP 180767 180767 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C36%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1792 SAMTools SNP 181465 181465 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C17%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.015%2C0.0086%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold1792 SAMTools SNP 181507 181507 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1792 SAMTools SNP 182165 182165 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1792 SAMTools SNP 182273 182273 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.62%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1792 SAMTools SNP 183366 183366 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1792 SAMTools SNP 183537 183537 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C51%2C0:99 scaffold1792 SAMTools SNP 184149 184149 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1792 SAMTools SNP 184178 184178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C17%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1792 SAMTools SNP 207533 207533 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1792 SAMTools SNP 208453 208453 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1792 SAMTools SNP 208995 208995 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1792 SAMTools SNP 212517 212517 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1792 SAMTools SNP 212536 212536 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.051%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C201:75 scaffold1792 SAMTools SNP 243232 243232 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1792 SAMTools SNP 243574 243574 50 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0%2C80%2C12%2C77:45 scaffold1792 SAMTools SNP 245917 245917 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C162:33 scaffold1792 SAMTools SNP 247279 247279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1792 SAMTools SNP 252344 252344 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C99%2C0:99 scaffold1792 SAMTools SNP 252892 252892 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C241:99 scaffold1792 SAMTools SNP 252947 252947 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1792 SAMTools SNP 252956 252956 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1792 SAMTools SNP 253130 253130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-06%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 253458 253458 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C2%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.17%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1792 SAMTools SNP 253477 253477 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1792 SAMTools SNP 253571 253571 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1792 SAMTools SNP 253572 253572 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.07%2C0.26%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C248:99 scaffold1792 SAMTools SNP 253777 253777 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C5%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 254032 254032 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C7%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1792 SAMTools SNP 254180 254180 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 254237 254237 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 254474 254474 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C141:99 scaffold1792 SAMTools SNP 255340 255340 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C21%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C2.3e-10%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 256009 256009 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1792 SAMTools SNP 256030 256030 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1792 SAMTools SNP 256337 256337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C58%2C19%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.093%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 256719 256719 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C40%2C237%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-13%2C1%2C1%2C2.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 257765 257765 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C66%2C279%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1792 SAMTools SNP 266486 266486 13.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1792 SAMTools SNP 266835 266835 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 267292 267292 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1792 SAMTools SNP 267301 267301 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1792 SAMTools SNP 267385 267385 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1792 SAMTools SNP 267778 267778 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1792 SAMTools SNP 267814 267814 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C247:99 scaffold1792 SAMTools SNP 267904 267904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1792 SAMTools SNP 268518 268518 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1792 SAMTools SNP 268553 268553 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1792 SAMTools SNP 268565 268565 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1792 SAMTools SNP 269265 269265 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1792 SAMTools SNP 269357 269357 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1792 SAMTools SNP 270442 270442 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.1%2C0.25%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold1792 SAMTools SNP 270934 270934 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C1%2C26%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.49%2C0.27%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1792 SAMTools SNP 271343 271343 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.52%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1792 SAMTools SNP 271352 271352 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1792 SAMTools SNP 271522 271522 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C39%2C0:74 scaffold1792 SAMTools SNP 271587 271587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.11%2C0.49%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1792 SAMTools SNP 272173 272173 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C4%2C17%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.72%2C5.2e-19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1792 SAMTools SNP 273435 273435 60.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold1792 SAMTools SNP 295555 295555 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1792 SAMTools SNP 295580 295580 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1792 SAMTools SNP 296792 296792 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C8%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold1792 SAMTools SNP 297672 297672 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1792 SAMTools SNP 298230 298230 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1792 SAMTools SNP 298611 298611 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1792 SAMTools SNP 298624 298624 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1793 SAMTools SNP 9793 9793 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1793 SAMTools SNP 9814 9814 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1793 SAMTools SNP 10415 10415 45.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1794 SAMTools SNP 2925 2925 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1794 SAMTools SNP 2954 2954 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1794 SAMTools SNP 3958 3958 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C18%2C0:33 scaffold1794 SAMTools SNP 4077 4077 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C84%2C0:99 scaffold1794 SAMTools SNP 4954 4954 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1794 SAMTools SNP 6258 6258 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1794 SAMTools SNP 7295 7295 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C19%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0018%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1794 SAMTools SNP 7346 7346 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 7353 7353 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.045%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 9295 9295 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1794 SAMTools SNP 12492 12492 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 12507 12507 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 12607 12607 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1794 SAMTools SNP 13302 13302 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold1794 SAMTools SNP 13331 13331 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1794 SAMTools SNP 14362 14362 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C15%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold1794 SAMTools SNP 15012 15012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 15033 15033 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C19%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1794 SAMTools SNP 15132 15132 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C54%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1794 SAMTools SNP 16123 16123 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1794 SAMTools SNP 18523 18523 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1794 SAMTools SNP 19887 19887 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0043%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C254:65 scaffold1794 SAMTools SNP 20072 20072 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C22%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.28%2C0.00011%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C19:22 scaffold1794 SAMTools SNP 20986 20986 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1794 SAMTools SNP 23091 23091 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1794 SAMTools SNP 23449 23449 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1794 SAMTools SNP 23467 23467 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1794 SAMTools SNP 24800 24800 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1794 SAMTools SNP 48325 48325 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1794 SAMTools SNP 48386 48386 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 48977 48977 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1794 SAMTools SNP 49206 49206 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1794 SAMTools SNP 49314 49314 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.45%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1794 SAMTools SNP 49603 49603 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C0%2C34%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1794 SAMTools SNP 49766 49766 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C30%2C0:57 scaffold1794 SAMTools SNP 52021 52021 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1794 SAMTools SNP 53557 53557 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1794 SAMTools SNP 54728 54728 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 54741 54741 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 54816 54816 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1794 SAMTools SNP 54818 54818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1794 SAMTools SNP 55263 55263 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C249:99 scaffold1794 SAMTools SNP 55317 55317 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C54%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C178%2C0:99 scaffold1794 SAMTools SNP 56167 56167 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.031%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1794 SAMTools SNP 56470 56470 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C22%2C63%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.37%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1794 SAMTools SNP 56673 56673 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C53%2C28%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D7.8e-07%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1794 SAMTools SNP 57049 57049 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C59%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1794 SAMTools SNP 57772 57772 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1794 SAMTools SNP 57817 57817 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1794 SAMTools SNP 58345 58345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1794 SAMTools SNP 61989 61989 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C240:99 scaffold1794 SAMTools SNP 62358 62358 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C0.39%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold1794 SAMTools SNP 62456 62456 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C7.4e-14%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1794 SAMTools SNP 62507 62507 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.028%2C1e-27%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1794 SAMTools SNP 63279 63279 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1794 SAMTools SNP 63754 63754 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1794 SAMTools SNP 63868 63868 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold1794 SAMTools SNP 63970 63970 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.053%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1794 SAMTools SNP 64492 64492 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C21%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.7e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 65114 65114 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C102:69 scaffold1794 SAMTools SNP 67670 67670 80 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C48%2C0%2C111%2C34%2C108:93 scaffold1794 SAMTools SNP 67757 67757 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C98%2C58%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 68080 68080 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C45%2C13%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.052%2C0.00025%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1794 SAMTools SNP 68084 68084 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 68162 68162 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C72%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1794 SAMTools SNP 68547 68547 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold1794 SAMTools SNP 68608 68608 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold1794 SAMTools SNP 68807 68807 14.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1794 SAMTools SNP 72405 72405 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 72611 72611 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C171%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 74358 74358 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.22%2C6.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1794 SAMTools SNP 74653 74653 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1794 SAMTools SNP 79299 79299 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C244:99 scaffold1794 SAMTools SNP 79355 79355 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C105%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C44:47 scaffold1794 SAMTools SNP 81431 81431 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C43%2C3%2C14%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1794 SAMTools SNP 82194 82194 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C6%2C16%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1794 SAMTools SNP 82239 82239 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 82489 82489 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C92%2C93%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D8.3e-11%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1794 SAMTools SNP 82570 82570 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C232%2C31%2C155%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.033%2C1.8e-216%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1794 SAMTools SNP 83402 83402 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C75%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 83441 83441 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C58%2C12%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1.3e-08%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1794 SAMTools SNP 84177 84177 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C246:99 scaffold1794 SAMTools SNP 84182 84182 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.11%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1794 SAMTools SNP 84336 84336 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C27%2C0:50 scaffold1794 SAMTools SNP 85556 85556 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 85581 85581 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1794 SAMTools SNP 87102 87102 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.0048%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1794 SAMTools SNP 87122 87122 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1794 SAMTools SNP 89516 89516 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C15%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.00027%2C1.3e-25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1794 SAMTools SNP 97719 97719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 101931 101931 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 101946 101946 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 102830 102830 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.55%2C0.44%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1794 SAMTools SNP 104884 104884 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0029%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1794 SAMTools SNP 106922 106922 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 106940 106940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.028%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 107015 107015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 108292 108292 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.013%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1794 SAMTools SNP 109536 109536 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C60%2C0:99 scaffold1794 SAMTools SNP 115300 115300 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C158:97 scaffold1794 SAMTools SNP 115930 115930 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1794 SAMTools SNP 115970 115970 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1794 SAMTools SNP 118094 118094 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C0.00068%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C244:30 scaffold1794 SAMTools SNP 119032 119032 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 128769 128769 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1794 SAMTools SNP 132260 132260 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1794 SAMTools SNP 139431 139431 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1794 SAMTools SNP 148395 148395 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 148469 148469 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C45%2C0:87 scaffold1794 SAMTools SNP 149702 149702 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1794 SAMTools SNP 149795 149795 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1794 SAMTools SNP 150845 150845 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1794 SAMTools SNP 151592 151592 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 153090 153090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1794 SAMTools SNP 153845 153845 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 154455 154455 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1794 SAMTools SNP 154460 154460 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1794 SAMTools SNP 154818 154818 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 158137 158137 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1794 SAMTools SNP 158175 158175 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 158503 158503 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 158521 158521 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 159825 159825 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 161322 161322 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C76:79 scaffold1794 SAMTools SNP 161648 161648 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1794 SAMTools SNP 161650 161650 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1794 SAMTools SNP 168442 168442 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold1794 SAMTools SNP 168448 168448 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.064%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold1794 SAMTools SNP 168499 168499 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.37%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C145:70 scaffold1794 SAMTools SNP 169618 169618 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold1794 SAMTools SNP 169621 169621 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1794 SAMTools SNP 169975 169975 98.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C15%2C0:27 scaffold1794 SAMTools SNP 171182 171182 38.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1794 SAMTools SNP 173341 173341 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.063%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 199771 199771 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C62:33 scaffold1794 SAMTools SNP 200346 200346 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D1%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C93%2C0:72 scaffold1794 SAMTools SNP 202506 202506 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1794 SAMTools SNP 202627 202627 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1794 SAMTools SNP 203010 203010 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold1794 SAMTools SNP 205519 205519 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1794 SAMTools SNP 207727 207727 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1794 SAMTools SNP 207733 207733 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold1794 SAMTools SNP 208323 208323 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C16%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1794 SAMTools SNP 209073 209073 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1794 SAMTools SNP 210875 210875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1794 SAMTools SNP 210920 210920 60.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold1794 SAMTools SNP 210928 210928 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0079%2C0%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C156:40 scaffold1794 SAMTools SNP 210940 210940 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.048%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C137:76 scaffold1794 SAMTools SNP 211168 211168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1794 SAMTools SNP 211262 211262 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1794 SAMTools SNP 211281 211281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1794 SAMTools SNP 212966 212966 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1794 SAMTools SNP 213014 213014 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C229:99 scaffold1794 SAMTools SNP 213020 213020 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C110:99 scaffold1794 SAMTools SNP 213472 213472 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1794 SAMTools SNP 213520 213520 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold1794 SAMTools SNP 213708 213708 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 214123 214123 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1794 SAMTools SNP 214171 214171 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C165:99 scaffold1794 SAMTools SNP 214174 214174 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C165:99 scaffold1794 SAMTools SNP 214177 214177 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1794 SAMTools SNP 214210 214210 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C191:99 scaffold1794 SAMTools SNP 214414 214414 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C21%2C0:39 scaffold1794 SAMTools SNP 214465 214465 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1794 SAMTools SNP 214634 214634 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1794 SAMTools SNP 214887 214887 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 215025 215025 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 215064 215064 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 215094 215094 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 215334 215334 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1794 SAMTools SNP 215387 215387 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1794 SAMTools SNP 215865 215865 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D0.029%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C107:99 scaffold1794 SAMTools SNP 215877 215877 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold1794 SAMTools SNP 215919 215919 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.18%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1794 SAMTools SNP 216314 216314 97 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C133%2C124%2C133%2C0%2C124:16 scaffold1794 SAMTools SNP 217298 217298 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.23%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold1794 SAMTools SNP 217356 217356 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold1794 SAMTools SNP 217442 217442 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 217851 217851 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1794 SAMTools SNP 217854 217854 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold1794 SAMTools SNP 220645 220645 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 228296 228296 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1794 SAMTools SNP 228311 228311 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1794 SAMTools SNP 228368 228368 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 228407 228407 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 228440 228440 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1794 SAMTools SNP 228604 228604 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1794 SAMTools SNP 228869 228869 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold1794 SAMTools SNP 228909 228909 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C245:28 scaffold1794 SAMTools SNP 230810 230810 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1794 SAMTools SNP 231031 231031 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1794 SAMTools SNP 231073 231073 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1794 SAMTools SNP 231191 231191 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.59%2C0.19%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1794 SAMTools SNP 231401 231401 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C23%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.017%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1794 SAMTools SNP 231404 231404 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 234971 234971 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C24%2C0:45 scaffold1794 SAMTools SNP 235139 235139 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1794 SAMTools SNP 236744 236744 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1794 SAMTools SNP 236803 236803 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.036%2C0.1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C169:57 scaffold1794 SAMTools SNP 236805 236805 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1794 SAMTools SNP 236811 236811 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1794 SAMTools SNP 240294 240294 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 240495 240495 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1794 SAMTools SNP 240883 240883 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.48%2C0.00044%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C225:99 scaffold1794 SAMTools SNP 242103 242103 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1794 SAMTools SNP 242105 242105 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1794 SAMTools SNP 242604 242604 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold1794 SAMTools SNP 242613 242613 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1794 SAMTools SNP 242637 242637 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1794 SAMTools SNP 247989 247989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1794 SAMTools SNP 248017 248017 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.013%2C0.46%2C1%2C7.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1794 SAMTools SNP 248071 248071 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C7%2C9%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.49%2C1.6e-17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1794 SAMTools SNP 248432 248432 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C0.15%2C1%2C6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C187:99 scaffold1794 SAMTools SNP 248492 248492 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1794 SAMTools SNP 248984 248984 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 249183 249183 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1794 SAMTools SNP 249188 249188 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1794 SAMTools SNP 250039 250039 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D31%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0067%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1794 SAMTools SNP 251592 251592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1794 SAMTools SNP 252200 252200 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C1%2C13%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1794 SAMTools SNP 252209 252209 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1794 SAMTools SNP 252225 252225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1794 SAMTools SNP 253832 253832 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1794 SAMTools SNP 259409 259409 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.0015%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1794 SAMTools SNP 259452 259452 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.13%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold1794 SAMTools SNP 259486 259486 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.5e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C187:59 scaffold1794 SAMTools SNP 259645 259645 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.038%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C174:99 scaffold1794 SAMTools SNP 259660 259660 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C190:99 scaffold1794 SAMTools SNP 262536 262536 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C108%2C0:99 scaffold1794 SAMTools SNP 262765 262765 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.6e-09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C147:66 scaffold1794 SAMTools SNP 265908 265908 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1794 SAMTools SNP 270113 270113 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C105%2C5%2C63%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1.1e-06%2C2.3e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1794 SAMTools SNP 271238 271238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.092%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C38:41 scaffold1794 SAMTools SNP 271336 271336 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.0036%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 271469 271469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 275075 275075 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1794 SAMTools SNP 275146 275146 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1794 SAMTools SNP 276873 276873 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1794 SAMTools SNP 277634 277634 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.52%2C0.0017%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1794 SAMTools SNP 277675 277675 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C48%2C0:93 scaffold1794 SAMTools SNP 278408 278408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1794 SAMTools SNP 278447 278447 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.8e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C121:55 scaffold1794 SAMTools SNP 278457 278457 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.25%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1794 SAMTools SNP 278909 278909 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 281925 281925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C19%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.41%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 282122 282122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C46%2C28%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 282131 282131 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C44%2C31%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 282245 282245 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C29%2C40%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1.6e-05%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1794 SAMTools SNP 282621 282621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C54%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-08%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 282732 282732 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 284240 284240 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C36%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 284243 284243 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C36%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 284418 284418 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C63%2C26%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.1%2C3.8e-85%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1794 SAMTools SNP 284484 284484 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C108%2C5%2C29%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.78%2C1.2e-40%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1794 SAMTools SNP 284490 284490 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C101%2C5%2C30%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.77%2C4.6e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1794 SAMTools SNP 284810 284810 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold1794 SAMTools SNP 284876 284876 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1794 SAMTools SNP 284882 284882 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1794 SAMTools SNP 287151 287151 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1794 SAMTools SNP 287181 287181 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1794 SAMTools SNP 288776 288776 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 290625 290625 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1794 SAMTools SNP 290985 290985 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 292437 292437 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1794 SAMTools SNP 292476 292476 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 292505 292505 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1794 SAMTools SNP 293184 293184 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1794 SAMTools SNP 297807 297807 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C104:37 scaffold1794 SAMTools SNP 297819 297819 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 297883 297883 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1794 SAMTools SNP 301471 301471 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C7%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1794 SAMTools SNP 302328 302328 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.13%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1794 SAMTools SNP 302529 302529 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.22%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1794 SAMTools SNP 302631 302631 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.023%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1794 SAMTools SNP 303287 303287 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C7%2C0%3BMQ%3D46%3BFQ%3D85%3BPV4%3D0.047%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1794 SAMTools SNP 303306 303306 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D47%3BFQ%3D49%3BPV4%3D0.26%2C0.096%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C249:79 scaffold1794 SAMTools SNP 305281 305281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.058%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 305763 305763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 305802 305802 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1794 SAMTools SNP 306173 306173 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1794 SAMTools SNP 306184 306184 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1794 SAMTools SNP 306462 306462 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C126%2C0:99 scaffold1794 SAMTools SNP 306601 306601 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1794 SAMTools SNP 307609 307609 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.54%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1794 SAMTools SNP 311003 311003 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C7%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.0025%2C0.065%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1794 SAMTools SNP 311086 311086 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C9%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.057%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1794 SAMTools SNP 311317 311317 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C66%2C0%2C43%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.0021%2C2.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1794 SAMTools SNP 311384 311384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C6.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 311794 311794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D792%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C331%2C7%2C451%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1794 SAMTools SNP 315624 315624 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.4e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1794 SAMTools SNP 315644 315644 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.55%2C0.0092%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1794 SAMTools SNP 316004 316004 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1794 SAMTools SNP 316333 316333 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.089%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1794 SAMTools SNP 317251 317251 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1794 SAMTools SNP 317778 317778 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1794 SAMTools SNP 317802 317802 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C109:39 scaffold1794 SAMTools SNP 336312 336312 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1794 SAMTools SNP 336339 336339 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1794 SAMTools SNP 336474 336474 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1794 SAMTools SNP 336504 336504 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 336558 336558 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 336984 336984 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 338952 338952 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 338970 338970 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 340509 340509 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1794 SAMTools SNP 341556 341556 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 341579 341579 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1794 SAMTools SNP 341879 341879 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 341935 341935 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.27%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1794 SAMTools SNP 342278 342278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1794 SAMTools SNP 342296 342296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1794 SAMTools SNP 342392 342392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1794 SAMTools SNP 342631 342631 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 343137 343137 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold1794 SAMTools SNP 344366 344366 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold1794 SAMTools SNP 344761 344761 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1794 SAMTools SNP 346717 346717 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1794 SAMTools SNP 346729 346729 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1794 SAMTools SNP 346942 346942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1794 SAMTools SNP 347011 347011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C31%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1794 SAMTools SNP 347470 347470 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1794 SAMTools SNP 347581 347581 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 347771 347771 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 347940 347940 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1794 SAMTools SNP 348935 348935 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1794 SAMTools SNP 348965 348965 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1794 SAMTools SNP 349028 349028 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 352806 352806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1794 SAMTools SNP 352830 352830 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold1794 SAMTools SNP 352902 352902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1794 SAMTools SNP 352905 352905 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.12%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1794 SAMTools SNP 353119 353119 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1794 SAMTools SNP 353121 353121 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C135:99 scaffold1794 SAMTools SNP 353145 353145 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.59%2C0.13%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C245:99 scaffold1794 SAMTools SNP 353208 353208 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C8.4e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C74:46 scaffold1794 SAMTools SNP 353253 353253 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.43%2C6.8e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C160:84 scaffold1794 SAMTools SNP 354550 354550 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 355032 355032 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 355041 355041 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1794 SAMTools SNP 356098 356098 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1794 SAMTools SNP 356113 356113 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C4.9e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C254:64 scaffold1794 SAMTools SNP 356314 356314 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.04%2C0.0022%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C240:99 scaffold1794 SAMTools SNP 356866 356866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1794 SAMTools SNP 356902 356902 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 356938 356938 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C24:27 scaffold1794 SAMTools SNP 357068 357068 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1794 SAMTools SNP 357564 357564 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 357565 357565 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 357645 357645 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1794 SAMTools SNP 357764 357764 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1794 SAMTools SNP 357791 357791 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1794 SAMTools SNP 357818 357818 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C234:99 scaffold1794 SAMTools SNP 358198 358198 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.15%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C216:99 scaffold1794 SAMTools SNP 358245 358245 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1794 SAMTools SNP 358252 358252 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1794 SAMTools SNP 359269 359269 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1794 SAMTools SNP 365407 365407 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C60%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C205%2C0:99 scaffold1794 SAMTools SNP 365560 365560 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C46%2C9%2C38%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.49%2C9.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1794 SAMTools SNP 366613 366613 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 377313 377313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1794 SAMTools SNP 377996 377996 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1794 SAMTools SNP 379953 379953 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 382877 382877 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 393952 393952 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1794 SAMTools SNP 408764 408764 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C127:63 scaffold1794 SAMTools SNP 408849 408849 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C24%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1794 SAMTools SNP 409945 409945 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.16%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1794 SAMTools SNP 418316 418316 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1794 SAMTools SNP 434018 434018 4.13 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C15%2C12%2C32%2C0%2C29:3 scaffold1794 SAMTools SNP 503355 503355 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1794 SAMTools SNP 539119 539119 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1794 SAMTools SNP 539122 539122 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1794 SAMTools SNP 539293 539293 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1794 SAMTools SNP 581581 581581 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0079%2C7.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C144:31 scaffold1794 SAMTools SNP 581687 581687 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1794 SAMTools SNP 582429 582429 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C18%2C60%3BMQ%3D50%3BFQ%3D-193%3BPV4%3D1%2C5.9e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C166%2C0:99 scaffold1794 SAMTools SNP 582532 582532 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C255%2C0:99 scaffold1794 SAMTools SNP 595221 595221 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1796 SAMTools SNP 25154 25154 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1796 SAMTools SNP 83046 83046 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.35%2C8.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1799 SAMTools SNP 7452 7452 46.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1799 SAMTools SNP 7520 7520 24.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold1799 SAMTools SNP 14373 14373 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1799 SAMTools SNP 18911 18911 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.1%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C163:99 scaffold1799 SAMTools SNP 20320 20320 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold1799 SAMTools SNP 41237 41237 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C225:99 scaffold1799 SAMTools SNP 50992 50992 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1799 SAMTools SNP 51021 51021 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1799 SAMTools SNP 53127 53127 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1799 SAMTools SNP 64979 64979 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1799 SAMTools SNP 67089 67089 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold180 SAMTools SNP 14009 14009 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.26%2C0.00056%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C251:39 scaffold180 SAMTools SNP 14015 14015 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.51%2C0.0058%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold180 SAMTools SNP 15395 15395 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold180 SAMTools SNP 21716 21716 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold180 SAMTools SNP 26142 26142 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold180 SAMTools SNP 27278 27278 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C8:11 scaffold180 SAMTools SNP 28388 28388 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D20%3BFQ%3D-71%3BPV4%3D1%2C0.5%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C44%2C0:85 scaffold180 SAMTools SNP 28406 28406 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C1%3BMQ%3D24%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C178%2C0:99 scaffold180 SAMTools SNP 28775 28775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C1%2C54%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.048%2C0.071%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold180 SAMTools SNP 28776 28776 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C59%2C2%2C39%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold180 SAMTools SNP 29708 29708 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D35%3BFQ%3D48.5%3BPV4%3D1%2C0.21%2C0.067%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C76:78 scaffold180 SAMTools SNP 29746 29746 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold180 SAMTools SNP 29910 29910 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold180 SAMTools SNP 44103 44103 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold180 SAMTools SNP 47072 47072 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C47%2C19%3BMQ%3D42%3BFQ%3D-109%3BPV4%3D0.17%2C1.7e-12%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C82%2C0:72 scaffold180 SAMTools SNP 47589 47589 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold180 SAMTools SNP 47618 47618 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold180 SAMTools SNP 47807 47807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C39%2C34%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 1098 1098 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 1141 1141 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 1255 1255 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 1317 1317 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C235:99 scaffold1800 SAMTools SNP 1708 1708 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1800 SAMTools SNP 1712 1712 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1800 SAMTools SNP 6252 6252 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C121:83 scaffold1800 SAMTools SNP 16208 16208 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold1800 SAMTools SNP 16321 16321 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1800 SAMTools SNP 16412 16412 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1800 SAMTools SNP 17345 17345 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C25%2C62%2C0%3BMQ%3D49%3BFQ%3D144%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1800 SAMTools SNP 17392 17392 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C19%2C53%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 18201 18201 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C121%2C0%2C76%3BMQ%3D49%3BFQ%3D223%3BPV4%3D1%2C0.061%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1800 SAMTools SNP 18238 18238 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1800 SAMTools SNP 18240 18240 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.45%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1800 SAMTools SNP 19843 19843 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1800 SAMTools SNP 22745 22745 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C129:37 scaffold1800 SAMTools SNP 25501 25501 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1800 SAMTools SNP 27419 27419 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 27715 27715 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 29260 29260 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C38:41 scaffold1800 SAMTools SNP 38242 38242 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1800 SAMTools SNP 50837 50837 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 52673 52673 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D0.33%2C0%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold1800 SAMTools SNP 53157 53157 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold1800 SAMTools SNP 53549 53549 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1800 SAMTools SNP 53899 53899 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1800 SAMTools SNP 53953 53953 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1800 SAMTools SNP 53998 53998 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.033%2C3.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1800 SAMTools SNP 54052 54052 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.39%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1800 SAMTools SNP 54324 54324 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1800 SAMTools SNP 54357 54357 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.9e-07%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C218:44 scaffold1800 SAMTools SNP 54482 54482 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1800 SAMTools SNP 54491 54491 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1800 SAMTools SNP 54773 54773 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.13%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C174:99 scaffold1800 SAMTools SNP 55385 55385 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 55778 55778 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1800 SAMTools SNP 56003 56003 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1800 SAMTools SNP 56429 56429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1800 SAMTools SNP 56452 56452 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 56485 56485 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.028%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 57431 57431 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 57994 57994 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 58263 58263 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.37%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 58828 58828 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold1800 SAMTools SNP 58834 58834 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold1800 SAMTools SNP 59342 59342 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1800 SAMTools SNP 59411 59411 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C4.7e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1800 SAMTools SNP 59474 59474 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C221:58 scaffold1800 SAMTools SNP 59504 59504 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1800 SAMTools SNP 59880 59880 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1800 SAMTools SNP 59916 59916 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C237:99 scaffold1800 SAMTools SNP 60240 60240 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 61793 61793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 62075 62075 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 62154 62154 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C7%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1.7e-05%2C4.9e-05%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1800 SAMTools SNP 62202 62202 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 63240 63240 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C227:99 scaffold1800 SAMTools SNP 63662 63662 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.27%2C0.0038%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1800 SAMTools SNP 64604 64604 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C34%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1800 SAMTools SNP 64903 64903 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1800 SAMTools SNP 64922 64922 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.23%2C0.013%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1800 SAMTools SNP 64985 64985 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.32%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1800 SAMTools SNP 65769 65769 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C45%2C0%2C34%3BMQ%3D50%3BFQ%3D99%3BPV4%3D6.1e-06%2C4e-12%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1800 SAMTools SNP 66561 66561 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C3%2C14%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.18%2C1.3e-06%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1800 SAMTools SNP 72211 72211 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.023%2C3.1e-07%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1800 SAMTools SNP 73954 73954 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C33%2C1%2C15%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00057%2C1.1e-08%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1800 SAMTools SNP 76929 76929 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C15%2C0:27 scaffold1800 SAMTools SNP 77389 77389 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C24%2C0:45 scaffold1800 SAMTools SNP 77440 77440 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.45%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1800 SAMTools SNP 77458 77458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1800 SAMTools SNP 77590 77590 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.18%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 77740 77740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold1800 SAMTools SNP 78002 78002 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C18%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.061%2C2.7e-13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1800 SAMTools SNP 78024 78024 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 78039 78039 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C15%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1800 SAMTools SNP 78389 78389 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C35%2C21%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 78859 78859 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1800 SAMTools SNP 81607 81607 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C29%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.018%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 82067 82067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C132%2C66%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.39%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1800 SAMTools SNP 82646 82646 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.044%2C0.22%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1800 SAMTools SNP 87279 87279 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.16%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1800 SAMTools SNP 88041 88041 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1800 SAMTools SNP 92604 92604 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 93127 93127 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.059%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1800 SAMTools SNP 93508 93508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 93947 93947 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C9%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1800 SAMTools SNP 94591 94591 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00022%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C121:57 scaffold1800 SAMTools SNP 95454 95454 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 95673 95673 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1800 SAMTools SNP 95678 95678 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1800 SAMTools SNP 96411 96411 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C34%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C234:99 scaffold1800 SAMTools SNP 110105 110105 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1800 SAMTools SNP 110659 110659 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1800 SAMTools SNP 115090 115090 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1800 SAMTools SNP 115403 115403 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.49%2C0.025%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C242:76 scaffold1800 SAMTools SNP 115873 115873 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.41%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C164:99 scaffold1800 SAMTools SNP 117983 117983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 119215 119215 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 119898 119898 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.55%2C0.0094%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1800 SAMTools SNP 119994 119994 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.71%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 125391 125391 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D32%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C72%2C0:99 scaffold1800 SAMTools SNP 126276 126276 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C2%3BMQ%3D43%3BFQ%3D136%3BPV4%3D0.63%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C163:99 scaffold1800 SAMTools SNP 127082 127082 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C15%2C1%3BMQ%3D48%3BFQ%3D208%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1800 SAMTools SNP 134312 134312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1011%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C404%2C391%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-80%2C5.8e-31%2C1%2C3.8e-78;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 135108 135108 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1800 SAMTools SNP 137030 137030 16.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1800 SAMTools SNP 137994 137994 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.012%2C1.4e-07%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C176:44 scaffold1800 SAMTools SNP 139963 139963 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C9.2e-08%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C236:52 scaffold1800 SAMTools SNP 142510 142510 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1199%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C620%2C175%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1800 SAMTools SNP 142581 142581 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1161%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D329%2C403%2C88%2C203%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C5.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 142609 142609 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D851%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C526%2C26%2C278%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 144760 144760 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C369%2C0%2C203%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1800 SAMTools SNP 144800 144800 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C371%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1800 SAMTools SNP 150430 150430 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold1800 SAMTools SNP 150980 150980 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C18%2C0:33 scaffold1800 SAMTools SNP 151153 151153 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C18%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1800 SAMTools SNP 151225 151225 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C53%3BMQ%3D50%3BFQ%3D114%3BPV4%3D4.9e-14%2C7.8e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C141:99 scaffold1800 SAMTools SNP 151576 151576 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 151600 151600 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 152419 152419 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 152835 152835 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1800 SAMTools SNP 154188 154188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C54%2C6%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 154510 154510 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C191%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1800 SAMTools SNP 155291 155291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 155968 155968 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 156638 156638 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1800 SAMTools SNP 156688 156688 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 157151 157151 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 157164 157164 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1800 SAMTools SNP 157436 157436 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C50%2C2%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-06%2C1.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 158830 158830 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C17%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.37%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C237:99 scaffold1800 SAMTools SNP 158868 158868 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1800 SAMTools SNP 158881 158881 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1800 SAMTools SNP 158892 158892 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1800 SAMTools SNP 159750 159750 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.016%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold1800 SAMTools SNP 160546 160546 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.13%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 160547 160547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 161218 161218 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1800 SAMTools SNP 162167 162167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1800 SAMTools SNP 162227 162227 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1800 SAMTools SNP 162352 162352 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C254:99 scaffold1800 SAMTools SNP 162513 162513 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C228:42 scaffold1800 SAMTools SNP 162879 162879 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.075%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C151:99 scaffold1800 SAMTools SNP 163140 163140 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C1%2C18%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1800 SAMTools SNP 163183 163183 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1800 SAMTools SNP 163296 163296 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C3%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.13%2C6.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1800 SAMTools SNP 163387 163387 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.37%2C1.9e-07%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1800 SAMTools SNP 164063 164063 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1800 SAMTools SNP 164482 164482 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C200:72 scaffold1800 SAMTools SNP 164509 164509 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1800 SAMTools SNP 165110 165110 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1800 SAMTools SNP 166132 166132 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1800 SAMTools SNP 166562 166562 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C2%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.045%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1800 SAMTools SNP 166563 166563 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C2%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.045%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1800 SAMTools SNP 167016 167016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1800 SAMTools SNP 167032 167032 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1800 SAMTools SNP 167469 167469 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C21%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.014%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1800 SAMTools SNP 167501 167501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 167900 167900 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1800 SAMTools SNP 168373 168373 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1800 SAMTools SNP 168481 168481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1800 SAMTools SNP 169160 169160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 172398 172398 173 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C42%2C0:81 scaffold1800 SAMTools SNP 173362 173362 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C26%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.59%2C9.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1800 SAMTools SNP 173547 173547 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C7%2C14%3BMQ%3D48%3BFQ%3D86%3BPV4%3D0.52%2C1.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1800 SAMTools SNP 179183 179183 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C1%2C58%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 179225 179225 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C65%2C0%2C21%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.57%2C9.1e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1800 SAMTools SNP 179240 179240 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C76%2C0%2C44%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.3%2C1.1e-09%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1800 SAMTools SNP 179295 179295 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C74%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 180554 180554 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C6%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 181024 181024 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 181108 181108 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.31%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1800 SAMTools SNP 181133 181133 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1800 SAMTools SNP 181389 181389 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold1800 SAMTools SNP 181435 181435 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1800 SAMTools SNP 181446 181446 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1800 SAMTools SNP 181717 181717 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1800 SAMTools SNP 181925 181925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1800 SAMTools SNP 183598 183598 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C4%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1800 SAMTools SNP 183738 183738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C13%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 183914 183914 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1800 SAMTools SNP 184427 184427 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C30%2C6%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.068%2C1.6e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1800 SAMTools SNP 186833 186833 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1800 SAMTools SNP 187283 187283 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 187461 187461 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 187462 187462 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 187488 187488 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1800 SAMTools SNP 188163 188163 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 188169 188169 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 188256 188256 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.089%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1800 SAMTools SNP 188292 188292 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.31%2C0.36%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1800 SAMTools SNP 188728 188728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1800 SAMTools SNP 188987 188987 195 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C24%2C0%2C225%2C12%2C222:45 scaffold1800 SAMTools SNP 189541 189541 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1800 SAMTools SNP 189574 189574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1800 SAMTools SNP 189743 189743 99.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C13:16 scaffold1800 SAMTools SNP 190771 190771 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.59%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1800 SAMTools SNP 190806 190806 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.16%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 190926 190926 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1800 SAMTools SNP 191346 191346 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 192825 192825 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 193889 193889 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 197978 197978 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1800 SAMTools SNP 199789 199789 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.13%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1800 SAMTools SNP 200009 200009 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1800 SAMTools SNP 213380 213380 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 213678 213678 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1800 SAMTools SNP 213679 213679 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.00085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C158:99 scaffold1800 SAMTools SNP 213816 213816 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1800 SAMTools SNP 214626 214626 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 214647 214647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1800 SAMTools SNP 215965 215965 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C17%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.56%2C5.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1800 SAMTools SNP 216028 216028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1800 SAMTools SNP 218066 218066 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.17%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1800 SAMTools SNP 218965 218965 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1800 SAMTools SNP 220147 220147 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 220209 220209 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C15%2C0:27 scaffold1800 SAMTools SNP 220272 220272 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C54%2C0:99 scaffold1800 SAMTools SNP 220419 220419 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C8%2C53%2C21%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0066%2C4.9e-99%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1800 SAMTools SNP 220512 220512 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C14%2C63%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.79%2C2.3e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1800 SAMTools SNP 221120 221120 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C44%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1800 SAMTools SNP 221537 221537 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1800 SAMTools SNP 222277 222277 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1800 SAMTools SNP 223494 223494 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1800 SAMTools SNP 223503 223503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1800 SAMTools SNP 223718 223718 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C109:99 scaffold1800 SAMTools SNP 223753 223753 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1800 SAMTools SNP 226116 226116 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold1800 SAMTools SNP 226274 226274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1800 SAMTools SNP 228771 228771 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1800 SAMTools SNP 245417 245417 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1800 SAMTools SNP 245528 245528 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1800 SAMTools SNP 251258 251258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C46%2C28%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D1%2C0.18%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C0:99 scaffold1800 SAMTools SNP 251415 251415 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C49%2C45%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.2%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold1800 SAMTools SNP 251470 251470 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C57%2C0%2C12%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.11%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1800 SAMTools SNP 271697 271697 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1800 SAMTools SNP 294022 294022 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1800 SAMTools SNP 295187 295187 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1800 SAMTools SNP 296776 296776 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 296812 296812 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1800 SAMTools SNP 297502 297502 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1800 SAMTools SNP 297594 297594 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1800 SAMTools SNP 301965 301965 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1800 SAMTools SNP 306180 306180 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 306999 306999 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 307571 307571 62.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold1800 SAMTools SNP 317874 317874 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C231:99 scaffold1800 SAMTools SNP 318991 318991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1800 SAMTools SNP 319288 319288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.29%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold1800 SAMTools SNP 319345 319345 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.12%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1800 SAMTools SNP 319396 319396 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1800 SAMTools SNP 319866 319866 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1800 SAMTools SNP 383462 383462 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.37%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C209:40 scaffold1800 SAMTools SNP 384136 384136 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C45%2C1%2C17%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.29%2C6.5e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C245:30 scaffold1800 SAMTools SNP 384225 384225 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.1e-12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C127:46 scaffold1800 SAMTools SNP 385458 385458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C35%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.03%2C0.14%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 385735 385735 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C12%2C48%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 385951 385951 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C15%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.35%2C4.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1800 SAMTools SNP 386881 386881 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C14%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1800 SAMTools SNP 387974 387974 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.072%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1800 SAMTools SNP 395849 395849 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 396364 396364 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 396406 396406 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1800 SAMTools SNP 396478 396478 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1800 SAMTools SNP 396487 396487 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1800 SAMTools SNP 397333 397333 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1800 SAMTools SNP 397351 397351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C11%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1800 SAMTools SNP 398858 398858 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C92%2C7%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 398873 398873 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C48%2C16%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.24%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1800 SAMTools SNP 398912 398912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1800 SAMTools SNP 399401 399401 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C42%2C0:81 scaffold1800 SAMTools SNP 399428 399428 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C18%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1800 SAMTools SNP 399445 399445 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1800 SAMTools SNP 400151 400151 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1800 SAMTools SNP 400274 400274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C40%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C151:99 scaffold1800 SAMTools SNP 402200 402200 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C1%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.081%2C1%2C9.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1800 SAMTools SNP 402202 402202 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C40%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1800 SAMTools SNP 403605 403605 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1800 SAMTools SNP 403616 403616 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1800 SAMTools SNP 404896 404896 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1800 SAMTools SNP 406767 406767 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1800 SAMTools SNP 406827 406827 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1800 SAMTools SNP 438758 438758 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C1%3BMQ%3D33%3BFQ%3D-125%3BPV4%3D1%2C1%2C0.13%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C98%2C0:99 scaffold1800 SAMTools SNP 438759 438759 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D33%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1800 SAMTools SNP 442735 442735 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C45%2C0:82 scaffold1800 SAMTools SNP 442747 442747 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C51%2C0:98 scaffold1800 SAMTools SNP 443526 443526 38.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1800 SAMTools SNP 443562 443562 31.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold1800 SAMTools SNP 445299 445299 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1800 SAMTools SNP 456416 456416 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1801 SAMTools SNP 1209 1209 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1801 SAMTools SNP 1256 1256 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C42%2C0:81 scaffold1801 SAMTools SNP 11213 11213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1801 SAMTools SNP 12428 12428 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1801 SAMTools SNP 12540 12540 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C36%2C0:69 scaffold1801 SAMTools SNP 12641 12641 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1801 SAMTools SNP 14554 14554 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C5%3BMQ%3D42%3BFQ%3D22%3BPV4%3D0.27%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold1801 SAMTools SNP 14572 14572 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D88.3%3BPV4%3D0.00012%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C120:99 scaffold1801 SAMTools SNP 14753 14753 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D28%2C28%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1801 SAMTools SNP 14913 14913 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C30%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold1801 SAMTools SNP 14931 14931 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.027%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1801 SAMTools SNP 14962 14962 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C32%2C5%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.45%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1801 SAMTools SNP 14967 14967 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C6%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.11%2C0.35%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1801 SAMTools SNP 18289 18289 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1801 SAMTools SNP 18290 18290 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1801 SAMTools SNP 18849 18849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1801 SAMTools SNP 18882 18882 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.088%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1801 SAMTools SNP 19109 19109 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C72%2C0:99 scaffold1801 SAMTools SNP 19140 19140 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1801 SAMTools SNP 21363 21363 137 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C19%2C7%2C164%2C0%2C161:21 scaffold1801 SAMTools SNP 21432 21432 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C172%2C8%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1801 SAMTools SNP 24008 24008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C64%2C2%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1801 SAMTools SNP 27207 27207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C82%2C2%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1801 SAMTools SNP 27222 27222 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C25%2C0%2C19%3BMQ%3D50%3BFQ%3D27%3BPV4%3D4.9e-08%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1801 SAMTools SNP 27875 27875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1801 SAMTools SNP 28176 28176 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C35%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C8.1e-54%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C254:52 scaffold1801 SAMTools SNP 30078 30078 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C2.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold1801 SAMTools SNP 30108 30108 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D23.9%3BPV4%3D1%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C51:54 scaffold1801 SAMTools SNP 68918 68918 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1801 SAMTools SNP 68943 68943 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.017%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1801 SAMTools SNP 70355 70355 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1801 SAMTools SNP 70783 70783 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C33%2C0:63 scaffold1801 SAMTools SNP 71408 71408 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1802 SAMTools SNP 5242 5242 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1802 SAMTools SNP 8481 8481 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1802 SAMTools SNP 8492 8492 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C3%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 9711 9711 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C69%2C2%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C7.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 10737 10737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.097%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 10749 10749 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1802 SAMTools SNP 10770 10770 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1802 SAMTools SNP 11151 11151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold1802 SAMTools SNP 11567 11567 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C8%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1802 SAMTools SNP 12114 12114 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C38%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 12116 12116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C38%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 13253 13253 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1802 SAMTools SNP 13307 13307 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1802 SAMTools SNP 14286 14286 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C15%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1802 SAMTools SNP 14361 14361 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1802 SAMTools SNP 14365 14365 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.17%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C230:99 scaffold1802 SAMTools SNP 14654 14654 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1802 SAMTools SNP 14830 14830 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1802 SAMTools SNP 14854 14854 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1802 SAMTools SNP 15459 15459 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1802 SAMTools SNP 15497 15497 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.2%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C188:99 scaffold1802 SAMTools SNP 15974 15974 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C13%3BMQ%3D44%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1802 SAMTools SNP 16485 16485 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C7%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.064%2C0.062%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1802 SAMTools SNP 59503 59503 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1802 SAMTools SNP 63594 63594 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C0.0061%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold1802 SAMTools SNP 65487 65487 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1802 SAMTools SNP 66257 66257 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold1802 SAMTools SNP 66816 66816 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1802 SAMTools SNP 67515 67515 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1802 SAMTools SNP 72990 72990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1802 SAMTools SNP 77322 77322 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.044%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C146:46 scaffold1802 SAMTools SNP 78132 78132 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1802 SAMTools SNP 80413 80413 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C11%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold1802 SAMTools SNP 80728 80728 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.2%2C2e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold1802 SAMTools SNP 111928 111928 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1802 SAMTools SNP 115161 115161 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1802 SAMTools SNP 115162 115162 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1802 SAMTools SNP 117648 117648 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1802 SAMTools SNP 118172 118172 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C42%2C0:81 scaffold1802 SAMTools SNP 148076 148076 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1802 SAMTools SNP 148513 148513 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1802 SAMTools SNP 156475 156475 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1802 SAMTools SNP 164644 164644 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold1802 SAMTools SNP 164680 164680 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1802 SAMTools SNP 166477 166477 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1802 SAMTools SNP 166570 166570 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.43%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C163:49 scaffold1802 SAMTools SNP 166588 166588 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1802 SAMTools SNP 166618 166618 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.46%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1802 SAMTools SNP 167174 167174 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1802 SAMTools SNP 167189 167189 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1802 SAMTools SNP 167384 167384 53.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold1802 SAMTools SNP 167909 167909 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C18%2C0:33 scaffold1802 SAMTools SNP 168204 168204 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1802 SAMTools SNP 168703 168703 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1802 SAMTools SNP 168715 168715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1802 SAMTools SNP 168799 168799 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1802 SAMTools SNP 169183 169183 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1802 SAMTools SNP 169291 169291 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C51%2C0:92 scaffold1802 SAMTools SNP 169462 169462 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C27%2C0:51 scaffold1803 SAMTools SNP 485 485 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1803 SAMTools SNP 486 486 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1803 SAMTools SNP 685 685 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D686%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C405%2C225%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 905 905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D207%2C79%2C203%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C4.8e-07%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 938 938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C254%2C49%2C181%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C2.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 951 951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C226%2C11%2C198%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 986 986 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C276%2C15%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 1373 1373 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C23%2C20%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.79%2C1%2C1%2C6.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1803 SAMTools SNP 2956 2956 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C57%2C0:99 scaffold1803 SAMTools SNP 6300 6300 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1803 SAMTools SNP 6327 6327 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.00066%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1803 SAMTools SNP 6394 6394 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C72%2C0:99 scaffold1803 SAMTools SNP 6464 6464 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.028%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1803 SAMTools SNP 6660 6660 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1803 SAMTools SNP 6865 6865 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1803 SAMTools SNP 7286 7286 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 7466 7466 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C88:63 scaffold1803 SAMTools SNP 7517 7517 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1803 SAMTools SNP 8063 8063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C41%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1803 SAMTools SNP 8145 8145 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.22%2C0.014%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1803 SAMTools SNP 8365 8365 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1803 SAMTools SNP 9332 9332 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold1803 SAMTools SNP 9489 9489 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1803 SAMTools SNP 9512 9512 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 9647 9647 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 9907 9907 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1803 SAMTools SNP 9917 9917 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C220:99 scaffold1803 SAMTools SNP 10352 10352 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 10488 10488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C61%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1803 SAMTools SNP 11494 11494 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1803 SAMTools SNP 11506 11506 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1803 SAMTools SNP 11560 11560 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1803 SAMTools SNP 11597 11597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1803 SAMTools SNP 12730 12730 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.46%2C0.11%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1803 SAMTools SNP 13254 13254 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C175:74 scaffold1803 SAMTools SNP 15424 15424 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.013%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1803 SAMTools SNP 15437 15437 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1803 SAMTools SNP 15835 15835 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.14%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1803 SAMTools SNP 15916 15916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C37%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 16699 16699 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0148%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.17%2C0.0039%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1803 SAMTools SNP 16912 16912 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 17408 17408 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1803 SAMTools SNP 22304 22304 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1803 SAMTools SNP 24255 24255 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1803 SAMTools SNP 30382 30382 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1803 SAMTools SNP 30713 30713 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1803 SAMTools SNP 33554 33554 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1803 SAMTools SNP 33575 33575 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1803 SAMTools SNP 38355 38355 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1803 SAMTools SNP 38376 38376 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C37%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1803 SAMTools SNP 38406 38406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C18%2C38%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 38600 38600 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C1%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1803 SAMTools SNP 38615 38615 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C5%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0021%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1803 SAMTools SNP 38640 38640 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 39466 39466 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1803 SAMTools SNP 39475 39475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 39865 39865 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1803 SAMTools SNP 39905 39905 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1803 SAMTools SNP 40340 40340 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1803 SAMTools SNP 40370 40370 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1803 SAMTools SNP 40380 40380 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1803 SAMTools SNP 40553 40553 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1803 SAMTools SNP 40575 40575 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 40587 40587 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 40762 40762 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1803 SAMTools SNP 40783 40783 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1803 SAMTools SNP 40948 40948 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1803 SAMTools SNP 41044 41044 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1803 SAMTools SNP 41052 41052 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1803 SAMTools SNP 41107 41107 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1803 SAMTools SNP 41413 41413 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C249:99 scaffold1803 SAMTools SNP 41488 41488 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C28%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1803 SAMTools SNP 41537 41537 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 41713 41713 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 42059 42059 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 42074 42074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 42140 42140 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold1803 SAMTools SNP 42445 42445 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1803 SAMTools SNP 42601 42601 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D43%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.085%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C17:20 scaffold1803 SAMTools SNP 42602 42602 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C11%3BMQ%3D43%3BFQ%3D-13.2%3BPV4%3D0.083%2C0.15%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C14:17 scaffold1803 SAMTools SNP 43692 43692 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C31:34 scaffold1803 SAMTools SNP 44603 44603 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1803 SAMTools SNP 44604 44604 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1803 SAMTools SNP 45152 45152 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1803 SAMTools SNP 46099 46099 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C184:66 scaffold1803 SAMTools SNP 46126 46126 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1803 SAMTools SNP 46676 46676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1803 SAMTools SNP 46718 46718 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C223:99 scaffold1803 SAMTools SNP 49507 49507 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.65%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1803 SAMTools SNP 49516 49516 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C15%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.65%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1803 SAMTools SNP 49545 49545 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1803 SAMTools SNP 50513 50513 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1803 SAMTools SNP 53172 53172 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold1803 SAMTools SNP 55881 55881 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C45%2C0:87 scaffold1803 SAMTools SNP 56304 56304 42 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-52;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C34%2C9%2C73%2C0%2C64:47 scaffold1803 SAMTools SNP 56362 56362 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C199%2C0:99 scaffold1803 SAMTools SNP 57447 57447 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C217:99 scaffold1803 SAMTools SNP 58453 58453 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C5.8e-26%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C235:99 scaffold1803 SAMTools SNP 59370 59370 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 59373 59373 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 61316 61316 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1803 SAMTools SNP 61851 61851 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 63929 63929 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1803 SAMTools SNP 64602 64602 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00064%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C110:50 scaffold1803 SAMTools SNP 65482 65482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1803 SAMTools SNP 65489 65489 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1803 SAMTools SNP 66150 66150 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.56%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold1803 SAMTools SNP 70795 70795 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.57%2C1%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1803 SAMTools SNP 71711 71711 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 71737 71737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1803 SAMTools SNP 72425 72425 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1803 SAMTools SNP 72434 72434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1803 SAMTools SNP 72494 72494 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 73106 73106 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 73364 73364 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 73505 73505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1803 SAMTools SNP 74286 74286 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1803 SAMTools SNP 74995 74995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 75240 75240 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 75537 75537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C40%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.4%2C0.058%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 76490 76490 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1803 SAMTools SNP 79377 79377 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1803 SAMTools SNP 81453 81453 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1803 SAMTools SNP 81543 81543 29.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1803 SAMTools SNP 81578 81578 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 81588 81588 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1803 SAMTools SNP 83353 83353 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1803 SAMTools SNP 93522 93522 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1803 SAMTools SNP 95649 95649 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1803 SAMTools SNP 95652 95652 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C18%2C0:33 scaffold1803 SAMTools SNP 95943 95943 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 96517 96517 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 97656 97656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C5%2C50%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 98321 98321 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C50%2C12%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1.1e-07%2C1.2e-21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1803 SAMTools SNP 98350 98350 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 98705 98705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C54%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1803 SAMTools SNP 98835 98835 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.35%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold1803 SAMTools SNP 99180 99180 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0088%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1803 SAMTools SNP 99189 99189 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00083%2C0.22%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1803 SAMTools SNP 99704 99704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.03%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 100033 100033 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1803 SAMTools SNP 100036 100036 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1803 SAMTools SNP 101390 101390 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C2%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.18%2C0.082%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1803 SAMTools SNP 101883 101883 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.4e-07%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C134:88 scaffold1803 SAMTools SNP 104515 104515 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1803 SAMTools SNP 110625 110625 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold1803 SAMTools SNP 111738 111738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 112022 112022 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1803 SAMTools SNP 114621 114621 138 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C33%2C0:63 scaffold1803 SAMTools SNP 114700 114700 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1803 SAMTools SNP 115273 115273 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1803 SAMTools SNP 115275 115275 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1803 SAMTools SNP 115894 115894 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1803 SAMTools SNP 115896 115896 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1803 SAMTools SNP 115924 115924 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 116158 116158 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 118130 118130 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold1803 SAMTools SNP 118168 118168 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 118293 118293 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1803 SAMTools SNP 118865 118865 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1803 SAMTools SNP 118868 118868 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1803 SAMTools SNP 118914 118914 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1803 SAMTools SNP 119214 119214 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C233:54 scaffold1803 SAMTools SNP 119242 119242 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.0095%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C245:34 scaffold1803 SAMTools SNP 119275 119275 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C27%2C0:51 scaffold1803 SAMTools SNP 119521 119521 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1803 SAMTools SNP 119581 119581 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1803 SAMTools SNP 121648 121648 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D35%3BFQ%3D48%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C75:78 scaffold1803 SAMTools SNP 121678 121678 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C3%3BMQ%3D30%3BFQ%3D38%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C102:68 scaffold1803 SAMTools SNP 122037 122037 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.46%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C195:66 scaffold1803 SAMTools SNP 122665 122665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.067%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 123297 123297 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 123404 123404 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1803 SAMTools SNP 123504 123504 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1803 SAMTools SNP 123731 123731 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1803 SAMTools SNP 123737 123737 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.083%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1803 SAMTools SNP 123752 123752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1803 SAMTools SNP 123765 123765 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1803 SAMTools SNP 124147 124147 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1803 SAMTools SNP 124656 124656 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1803 SAMTools SNP 124687 124687 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1803 SAMTools SNP 125046 125046 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.036%2C0.00012%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C177:34 scaffold1803 SAMTools SNP 128681 128681 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 128995 128995 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 132798 132798 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1803 SAMTools SNP 132822 132822 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1803 SAMTools SNP 133129 133129 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 133134 133134 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1803 SAMTools SNP 138668 138668 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1803 SAMTools SNP 139166 139166 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 145221 145221 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1803 SAMTools SNP 145830 145830 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold1803 SAMTools SNP 145860 145860 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1803 SAMTools SNP 153066 153066 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 153070 153070 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 155276 155276 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 155523 155523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.2%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1803 SAMTools SNP 155659 155659 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold1803 SAMTools SNP 155719 155719 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D63.8%3BPV4%3D0.46%2C0.024%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C104:94 scaffold1803 SAMTools SNP 156609 156609 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C185:99 scaffold1803 SAMTools SNP 156900 156900 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C245:50 scaffold1803 SAMTools SNP 156907 156907 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0225%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D45%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0008%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold1803 SAMTools SNP 157776 157776 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1803 SAMTools SNP 157812 157812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C20%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold1803 SAMTools SNP 158016 158016 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0094%2C0.11%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1803 SAMTools SNP 158026 158026 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1803 SAMTools SNP 158779 158779 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1803 SAMTools SNP 160149 160149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1803 SAMTools SNP 160589 160589 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold1803 SAMTools SNP 160951 160951 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.048%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1803 SAMTools SNP 161305 161305 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.3%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1803 SAMTools SNP 161349 161349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 162177 162177 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C39%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 162225 162225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C40%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 162482 162482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C65%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1803 SAMTools SNP 163452 163452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C24%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1803 SAMTools SNP 165192 165192 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 165368 165368 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 165434 165434 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C10%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.71%2C1%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1803 SAMTools SNP 166266 166266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 166275 166275 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C2%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.24%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1803 SAMTools SNP 167769 167769 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C5%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.015%2C0.049%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1803 SAMTools SNP 170383 170383 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1803 SAMTools SNP 170812 170812 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00051%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C110:44 scaffold1803 SAMTools SNP 171989 171989 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C33%2C0:63 scaffold1803 SAMTools SNP 217967 217967 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1803 SAMTools SNP 218261 218261 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C102%2C25%2C48%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0024%2C4.8e-170%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1803 SAMTools SNP 218296 218296 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1803 SAMTools SNP 218498 218498 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C114%2C0:99 scaffold1803 SAMTools SNP 218653 218653 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0014%2C4.4e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1803 SAMTools SNP 219456 219456 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C2.4e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 220206 220206 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 220217 220217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C16%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1803 SAMTools SNP 220220 220220 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1803 SAMTools SNP 220288 220288 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.24%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1803 SAMTools SNP 220684 220684 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold1803 SAMTools SNP 220719 220719 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1803 SAMTools SNP 220734 220734 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 223769 223769 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 223982 223982 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1803 SAMTools SNP 224025 224025 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1803 SAMTools SNP 224049 224049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 224058 224058 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.19%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1803 SAMTools SNP 224073 224073 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1803 SAMTools SNP 224109 224109 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1803 SAMTools SNP 226016 226016 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1803 SAMTools SNP 226640 226640 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 227167 227167 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1803 SAMTools SNP 227185 227185 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D88.6%3BPV4%3D0.14%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C121:99 scaffold1803 SAMTools SNP 233248 233248 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C9%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.00091%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 233265 233265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C4%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 233305 233305 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 236545 236545 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1803 SAMTools SNP 236708 236708 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1803 SAMTools SNP 237548 237548 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C21%2C0:39 scaffold1803 SAMTools SNP 237617 237617 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1803 SAMTools SNP 238117 238117 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1803 SAMTools SNP 238213 238213 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1803 SAMTools SNP 238354 238354 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.05%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C237:99 scaffold1803 SAMTools SNP 238357 238357 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.055%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C237:99 scaffold1803 SAMTools SNP 238402 238402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1803 SAMTools SNP 238586 238586 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1803 SAMTools SNP 238719 238719 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C115:99 scaffold1803 SAMTools SNP 238737 238737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1803 SAMTools SNP 238936 238936 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1803 SAMTools SNP 238948 238948 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1803 SAMTools SNP 238971 238971 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1803 SAMTools SNP 239302 239302 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C13%2C7%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold1803 SAMTools SNP 239371 239371 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1803 SAMTools SNP 239407 239407 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C35%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1803 SAMTools SNP 239520 239520 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C2%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.27%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1803 SAMTools SNP 239529 239529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C33%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold1803 SAMTools SNP 239631 239631 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00021%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1803 SAMTools SNP 240391 240391 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C0%2C12%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0023%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1803 SAMTools SNP 240558 240558 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.18%2C0.015%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1803 SAMTools SNP 240609 240609 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.22%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1803 SAMTools SNP 240741 240741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.6%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1803 SAMTools SNP 240753 240753 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1803 SAMTools SNP 241651 241651 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.43%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 241914 241914 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C10%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1803 SAMTools SNP 241930 241930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 242097 242097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C32%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 242187 242187 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C3%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1803 SAMTools SNP 242217 242217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 242411 242411 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.14%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1803 SAMTools SNP 243132 243132 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.14%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C235:99 scaffold1803 SAMTools SNP 243312 243312 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1803 SAMTools SNP 243640 243640 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C13%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.53%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1803 SAMTools SNP 245875 245875 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0053%2C0.49%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1803 SAMTools SNP 245920 245920 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0055%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1803 SAMTools SNP 246092 246092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 246173 246173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 246607 246607 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1.8e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1803 SAMTools SNP 246846 246846 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 247026 247026 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1803 SAMTools SNP 247048 247048 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1803 SAMTools SNP 247473 247473 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1803 SAMTools SNP 247533 247533 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1803 SAMTools SNP 247560 247560 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 248078 248078 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1803 SAMTools SNP 248111 248111 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1803 SAMTools SNP 248156 248156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 248559 248559 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold1803 SAMTools SNP 248838 248838 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C42%2C0:81 scaffold1803 SAMTools SNP 253141 253141 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C2%2C19%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.00036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C218:66 scaffold1803 SAMTools SNP 253524 253524 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C112%2C27%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C3.7e-06%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 255531 255531 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.47%2C0.41%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1803 SAMTools SNP 255946 255946 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 255975 255975 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 256595 256595 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0091%2C0.00046%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1803 SAMTools SNP 257134 257134 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C21%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.056%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C200:99 scaffold1803 SAMTools SNP 257183 257183 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1803 SAMTools SNP 257185 257185 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1803 SAMTools SNP 257601 257601 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1803 SAMTools SNP 260416 260416 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1803 SAMTools SNP 261422 261422 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 263233 263233 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 263248 263248 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1803 SAMTools SNP 263287 263287 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1803 SAMTools SNP 264527 264527 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 264581 264581 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 267191 267191 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1803 SAMTools SNP 267227 267227 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1803 SAMTools SNP 267335 267335 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1803 SAMTools SNP 269035 269035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1803 SAMTools SNP 269143 269143 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1803 SAMTools SNP 277033 277033 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C21%2C2%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1803 SAMTools SNP 277370 277370 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold1803 SAMTools SNP 277586 277586 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.5%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C198:57 scaffold1803 SAMTools SNP 277599 277599 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0014%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1803 SAMTools SNP 277643 277643 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 278299 278299 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C35%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.15%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C119:99 scaffold1803 SAMTools SNP 278470 278470 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C5%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0011%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1803 SAMTools SNP 278542 278542 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C245:99 scaffold1803 SAMTools SNP 279358 279358 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C49%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.053%2C0.41%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1803 SAMTools SNP 279400 279400 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C68%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 279662 279662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C66%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 281519 281519 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.56%2C3.9e-05%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1803 SAMTools SNP 284411 284411 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1803 SAMTools SNP 285263 285263 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold1803 SAMTools SNP 285646 285646 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1803 SAMTools SNP 285647 285647 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1803 SAMTools SNP 285649 285649 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1803 SAMTools SNP 286249 286249 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C23%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D5.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1803 SAMTools SNP 286294 286294 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C38:41 scaffold1803 SAMTools SNP 287768 287768 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C21%2C0:39 scaffold1803 SAMTools SNP 292767 292767 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1803 SAMTools SNP 293236 293236 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1803 SAMTools SNP 293583 293583 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.56%2C0.14%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1803 SAMTools SNP 294184 294184 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C43%2C26%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C3.9e-12%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 294849 294849 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C82%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C148:99 scaffold1803 SAMTools SNP 297885 297885 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C77%2C0%2C15%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C211:99 scaffold1803 SAMTools SNP 298243 298243 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 298263 298263 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1803 SAMTools SNP 298633 298633 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C5.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C239:99 scaffold1803 SAMTools SNP 299474 299474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C5%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1803 SAMTools SNP 299522 299522 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.055%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 300156 300156 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C22%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.24%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 300680 300680 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1803 SAMTools SNP 301687 301687 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1803 SAMTools SNP 305282 305282 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C51%2C30%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 305291 305291 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C68%2C23%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 305528 305528 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1803 SAMTools SNP 305816 305816 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold1803 SAMTools SNP 306269 306269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C74%2C4%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 306972 306972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C145%2C42%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C2e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 307063 307063 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C76%2C4%2C16%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.59%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1803 SAMTools SNP 307067 307067 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C77%2C4%2C16%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1803 SAMTools SNP 307595 307595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C56%2C92%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 307610 307610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C286%2C231%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 308222 308222 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1803 SAMTools SNP 308418 308418 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C6%2C90%2C3%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.16%2C2.2e-106%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1803 SAMTools SNP 309781 309781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C64%2C6%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 309828 309828 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00067%2C1%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 311306 311306 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D391%2C25%2C53%2C21%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1.4e-07%2C1%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1803 SAMTools SNP 311437 311437 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D641%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C403%2C32%2C83%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.34%2C1.1e-151%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1803 SAMTools SNP 320699 320699 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1803 SAMTools SNP 321357 321357 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.033%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1803 SAMTools SNP 321390 321390 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C29%2C8%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-20%2C1.2e-05%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 321430 321430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C110%2C1%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-08%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 322547 322547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C32%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.099%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1803 SAMTools SNP 322657 322657 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C8%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.00074%2C0.32%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1803 SAMTools SNP 325491 325491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 325495 325495 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D574%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C297%2C2%2C232%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 327657 327657 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C14%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D5.6e-06%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1803 SAMTools SNP 327860 327860 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.07%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1803 SAMTools SNP 328035 328035 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C7%2C26%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 328046 328046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 328151 328151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 328190 328190 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C57%2C3%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.03%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1803 SAMTools SNP 328408 328408 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C3%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.032%2C0.062%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1803 SAMTools SNP 328813 328813 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 329248 329248 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C30%2C56%2C43%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.37%2C1.1e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 330245 330245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 330275 330275 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C211%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 332072 332072 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D16%2C22%2C163%2C194%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D0.73%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1803 SAMTools SNP 332119 332119 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C28%2C10%2C6%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.56%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1803 SAMTools SNP 332173 332173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C150%2C33%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-09%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 332809 332809 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C49%2C33%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1.3e-07%2C3.5e-11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1803 SAMTools SNP 333288 333288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C13%2C40%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 335766 335766 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C41%2C0%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 335784 335784 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C35%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-14%2C2.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 335832 335832 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C27%2C41%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00012%2C5.2e-75%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C169:99 scaffold1803 SAMTools SNP 336027 336027 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D556%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C108%2C0:99 scaffold1803 SAMTools SNP 336133 336133 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.51%2C2.3e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1803 SAMTools SNP 336173 336173 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.6e-41%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1803 SAMTools SNP 336648 336648 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C63%2C0:99 scaffold1803 SAMTools SNP 336953 336953 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D274%2C0%2C301%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1803 SAMTools SNP 341145 341145 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.57%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1803 SAMTools SNP 341698 341698 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C41%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.002%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 342600 342600 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 349660 349660 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C21%2C35%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 350883 350883 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C7%2C29%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1803 SAMTools SNP 350970 350970 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 370228 370228 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1341%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1339%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 371777 371777 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1990%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C849%2C25%2C903%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-27%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 372314 372314 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C22%2C2%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0035%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1803 SAMTools SNP 372736 372736 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C5.1e-06%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 373096 373096 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C15%2C0%2C23%3BMQ%3D50%3BFQ%3D75%3BPV4%3D3.1e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1803 SAMTools SNP 373210 373210 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C97%2C34%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D5e-13%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1803 SAMTools SNP 373255 373255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1803 SAMTools SNP 373477 373477 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C57%2C243%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-12%2C2.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 373669 373669 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C238%2C105%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D7.8e-79%2C0.0063%2C1%2C1.5e-154;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1803 SAMTools SNP 373995 373995 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D722%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C290%2C129%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 375015 375015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C128%2C1%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1803 SAMTools SNP 375668 375668 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1803 SAMTools SNP 375682 375682 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1803 SAMTools SNP 384416 384416 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 559 559 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C27%2C0:51 scaffold1804 SAMTools SNP 708 708 52.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold1804 SAMTools SNP 1876 1876 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold1804 SAMTools SNP 1945 1945 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1804 SAMTools SNP 3525 3525 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.014%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C231:99 scaffold1804 SAMTools SNP 3564 3564 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1804 SAMTools SNP 3985 3985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.37%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 6321 6321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 6340 6340 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C23%2C77%3BMQ%3D50%3BFQ%3D86%3BPV4%3D2.4e-13%2C0.5%2C1%2C2.3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold1804 SAMTools SNP 6378 6378 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C80%2C24%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D3.3e-13%2C0.0002%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1804 SAMTools SNP 7047 7047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1804 SAMTools SNP 7057 7057 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C0%2C13%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1804 SAMTools SNP 8758 8758 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1804 SAMTools SNP 8760 8760 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1804 SAMTools SNP 9818 9818 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.27%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1804 SAMTools SNP 9825 9825 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1804 SAMTools SNP 9915 9915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1804 SAMTools SNP 10146 10146 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold1804 SAMTools SNP 10721 10721 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1804 SAMTools SNP 11489 11489 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1804 SAMTools SNP 11497 11497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1804 SAMTools SNP 11866 11866 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold1804 SAMTools SNP 11878 11878 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1804 SAMTools SNP 13345 13345 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1804 SAMTools SNP 13353 13353 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1804 SAMTools SNP 13382 13382 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1804 SAMTools SNP 13842 13842 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.42%2C0.021%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1804 SAMTools SNP 13876 13876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C9%3BMQ%3D49%3BFQ%3D-60%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1804 SAMTools SNP 14972 14972 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 19894 19894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 21314 21314 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold1804 SAMTools SNP 58683 58683 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1804 SAMTools SNP 59266 59266 32.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold1804 SAMTools SNP 69337 69337 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C0.088%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C182:99 scaffold1804 SAMTools SNP 69824 69824 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1804 SAMTools SNP 69890 69890 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1804 SAMTools SNP 69938 69938 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C59%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C193%2C0:99 scaffold1804 SAMTools SNP 70037 70037 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.49%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 70311 70311 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C240:99 scaffold1804 SAMTools SNP 70326 70326 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold1804 SAMTools SNP 70684 70684 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C234:99 scaffold1804 SAMTools SNP 72347 72347 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1804 SAMTools SNP 72557 72557 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1804 SAMTools SNP 72600 72600 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 74924 74924 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C15%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1804 SAMTools SNP 74962 74962 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1804 SAMTools SNP 75320 75320 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C1%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1804 SAMTools SNP 75332 75332 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-06%2C1.4e-07%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 75335 75335 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 75344 75344 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-08%2C0.0019%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 75440 75440 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C16%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.084%2C2.6e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1804 SAMTools SNP 75482 75482 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.09%2C2.6e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1804 SAMTools SNP 75556 75556 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.072%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1804 SAMTools SNP 75563 75563 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1804 SAMTools SNP 76152 76152 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C5%3BMQ%3D48%3BFQ%3D184%3BPV4%3D0.076%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C233:99 scaffold1804 SAMTools SNP 77173 77173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 77188 77188 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1804 SAMTools SNP 77465 77465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1804 SAMTools SNP 77763 77763 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1804 SAMTools SNP 78063 78063 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1804 SAMTools SNP 78084 78084 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1804 SAMTools SNP 78379 78379 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C163:99 scaffold1804 SAMTools SNP 78421 78421 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.14%2C1.5e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1804 SAMTools SNP 78616 78616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 78630 78630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 79025 79025 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1804 SAMTools SNP 79691 79691 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 80175 80175 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1804 SAMTools SNP 80229 80229 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 80495 80495 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 80521 80521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 80841 80841 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 80844 80844 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 81081 81081 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1804 SAMTools SNP 81112 81112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1804 SAMTools SNP 81174 81174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1804 SAMTools SNP 81675 81675 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1804 SAMTools SNP 81684 81684 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1804 SAMTools SNP 81968 81968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 82076 82076 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 82466 82466 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1804 SAMTools SNP 82496 82496 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1804 SAMTools SNP 82823 82823 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1804 SAMTools SNP 83119 83119 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.32%2C0.44%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1804 SAMTools SNP 83128 83128 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.31%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1804 SAMTools SNP 83137 83137 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.34%2C0.18%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1804 SAMTools SNP 85098 85098 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1804 SAMTools SNP 89628 89628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 94048 94048 40.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1804 SAMTools SNP 95869 95869 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 95884 95884 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 109501 109501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 110794 110794 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.19%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 110818 110818 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C24%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.18%2C7.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1804 SAMTools SNP 111314 111314 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C283%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 112395 112395 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1804 SAMTools SNP 112421 112421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1804 SAMTools SNP 117384 117384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 121140 121140 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C0:57 scaffold1804 SAMTools SNP 124490 124490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1804 SAMTools SNP 124508 124508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1804 SAMTools SNP 128176 128176 49.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1804 SAMTools SNP 133145 133145 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D39.2%3BPV4%3D0.47%2C0.073%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C74:69 scaffold1804 SAMTools SNP 137639 137639 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C22%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.12%2C8.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1804 SAMTools SNP 140304 140304 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C94%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 147536 147536 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C5%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.15%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C67%2C0:99 scaffold1804 SAMTools SNP 147547 147547 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C4%2C42%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 147760 147760 55.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1804 SAMTools SNP 148159 148159 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C107%2C17%2C145%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C2.7e-197%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1804 SAMTools SNP 148447 148447 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C16%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C4.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1804 SAMTools SNP 149587 149587 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.2%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold1804 SAMTools SNP 150445 150445 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.47%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C206:99 scaffold1804 SAMTools SNP 150452 150452 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 152378 152378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C5%2C14%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 152867 152867 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1804 SAMTools SNP 154389 154389 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 155699 155699 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C187%2C44%2C32%3BMQ%3D41%3BFQ%3D20.1%3BPV4%3D2.5e-08%2C1%2C0.012%2C3.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1804 SAMTools SNP 158225 158225 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C51%2C0%2C23%3BMQ%3D50%3BFQ%3D99%3BPV4%3D7e-05%2C7.7e-05%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1804 SAMTools SNP 158261 158261 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C72%2C0:99 scaffold1804 SAMTools SNP 158312 158312 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C75%2C0:99 scaffold1804 SAMTools SNP 159774 159774 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.7%2C2.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1804 SAMTools SNP 164889 164889 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C21%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1804 SAMTools SNP 165309 165309 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1804 SAMTools SNP 166998 166998 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C34%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1804 SAMTools SNP 168940 168940 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C60%2C10%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 169488 169488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 169701 169701 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C148%2C0:99 scaffold1804 SAMTools SNP 170127 170127 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C7.4e-11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C71:33 scaffold1804 SAMTools SNP 170339 170339 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C255%2C0:99 scaffold1804 SAMTools SNP 170871 170871 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0089%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C126:44 scaffold1804 SAMTools SNP 170884 170884 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.7%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C40:43 scaffold1804 SAMTools SNP 171078 171078 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C13%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.18%2C3.3e-24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1804 SAMTools SNP 172886 172886 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C21%2C0:39 scaffold1804 SAMTools SNP 183458 183458 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C6%2C5%3BMQ%3D32%3BFQ%3D110%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C232:99 scaffold1804 SAMTools SNP 183488 183488 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C6%2C0%3BMQ%3D40%3BFQ%3D113%3BPV4%3D0.0026%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1804 SAMTools SNP 183722 183722 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1804 SAMTools SNP 184848 184848 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 184931 184931 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1804 SAMTools SNP 185157 185157 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1804 SAMTools SNP 185346 185346 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D17%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C54%2C0:99 scaffold1804 SAMTools SNP 191335 191335 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D40%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1804 SAMTools SNP 192869 192869 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D40%3BFQ%3D18.1%3BPV4%3D1%2C0.39%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C241:48 scaffold1804 SAMTools SNP 192894 192894 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold1804 SAMTools SNP 193011 193011 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1804 SAMTools SNP 193012 193012 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1804 SAMTools SNP 196432 196432 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 197584 197584 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1804 SAMTools SNP 197617 197617 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1804 SAMTools SNP 198978 198978 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1804 SAMTools SNP 199309 199309 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1804 SAMTools SNP 199357 199357 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 199512 199512 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 199527 199527 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 200154 200154 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C71:46 scaffold1804 SAMTools SNP 200450 200450 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1804 SAMTools SNP 200618 200618 43.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1804 SAMTools SNP 201346 201346 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1804 SAMTools SNP 202078 202078 83.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold1804 SAMTools SNP 202134 202134 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1804 SAMTools SNP 202161 202161 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1804 SAMTools SNP 202355 202355 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1804 SAMTools SNP 202436 202436 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 202444 202444 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold1804 SAMTools SNP 202652 202652 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 203426 203426 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1804 SAMTools SNP 203753 203753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 204382 204382 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1804 SAMTools SNP 204403 204403 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1804 SAMTools SNP 204907 204907 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1804 SAMTools SNP 204914 204914 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1804 SAMTools SNP 205186 205186 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1804 SAMTools SNP 211564 211564 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1804 SAMTools SNP 211612 211612 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0062%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.077%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C184:30 scaffold1804 SAMTools SNP 211732 211732 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1804 SAMTools SNP 221079 221079 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 221103 221103 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold1804 SAMTools SNP 221124 221124 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1804 SAMTools SNP 260992 260992 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 264573 264573 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold1804 SAMTools SNP 264677 264677 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1804 SAMTools SNP 264801 264801 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C74:30 scaffold1804 SAMTools SNP 265530 265530 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1804 SAMTools SNP 266198 266198 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1804 SAMTools SNP 269440 269440 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.09%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold1804 SAMTools SNP 270102 270102 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1804 SAMTools SNP 272475 272475 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C0:57 scaffold1804 SAMTools SNP 272975 272975 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1804 SAMTools SNP 273749 273749 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C4.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1804 SAMTools SNP 275241 275241 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1804 SAMTools SNP 279544 279544 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C5.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C19%2C0:35 scaffold1804 SAMTools SNP 279586 279586 76.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C18%2C0:33 scaffold1804 SAMTools SNP 279664 279664 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C108%2C6%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1804 SAMTools SNP 279711 279711 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 279860 279860 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.00082%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1804 SAMTools SNP 279874 279874 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 279995 279995 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C34%2C18%2C47%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.029%2C5.8e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1804 SAMTools SNP 280040 280040 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1804 SAMTools SNP 280326 280326 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C27%2C14%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.29%2C1.6e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1804 SAMTools SNP 280875 280875 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1804 SAMTools SNP 281018 281018 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1804 SAMTools SNP 281024 281024 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1804 SAMTools SNP 281030 281030 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1804 SAMTools SNP 281647 281647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C55%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1804 SAMTools SNP 281672 281672 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C62%2C0%2C16%3BMQ%3D48%3BFQ%3D45%3BPV4%3D1%2C4.9e-10%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C216:75 scaffold1804 SAMTools SNP 285932 285932 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D0%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C72%2C0:57 scaffold1804 SAMTools SNP 293082 293082 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C38:41 scaffold1804 SAMTools SNP 294354 294354 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D0%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C151%2C0:87 scaffold1804 SAMTools SNP 295655 295655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C68%3BMQ%3D20%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1804 SAMTools SNP 295924 295924 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C14%2C32%3BMQ%3D20%3BFQ%3D86%3BPV4%3D0.056%2C0.08%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C236:99 scaffold1804 SAMTools SNP 296038 296038 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C41%2C7%3BMQ%3D47%3BFQ%3D49.8%3BPV4%3D1%2C3.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C91:80 scaffold1804 SAMTools SNP 296053 296053 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold1804 SAMTools SNP 296131 296131 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C143%2C2%2C79%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.15%2C1.7e-140%2C0.025%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1804 SAMTools SNP 297388 297388 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1804 SAMTools SNP 297394 297394 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C6%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D9.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1804 SAMTools SNP 297399 297399 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C28%3BMQ%3D50%3BFQ%3D188%3BPV4%3D2.2e-05%2C0.11%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1804 SAMTools SNP 297903 297903 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.018%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1804 SAMTools SNP 297915 297915 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D2e-05%2C1%2C1%2C6.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1804 SAMTools SNP 304278 304278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1804 SAMTools SNP 304302 304302 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1804 SAMTools SNP 305462 305462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 305475 305475 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1804 SAMTools SNP 305510 305510 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C54%2C5%2C45%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.73%2C3.3e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1804 SAMTools SNP 305516 305516 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C3%2C32%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.2e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1804 SAMTools SNP 305655 305655 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C6.6e-07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C71:46 scaffold1804 SAMTools SNP 305686 305686 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1804 SAMTools SNP 310088 310088 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1804 SAMTools SNP 319452 319452 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.17%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C30:33 scaffold1804 SAMTools SNP 331549 331549 4.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5062%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-11.4%3BPV4%3D1%2C5.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C16:22 scaffold1804 SAMTools SNP 331758 331758 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1804 SAMTools SNP 335502 335502 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1804 SAMTools SNP 335531 335531 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1804 SAMTools SNP 335694 335694 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00028%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1804 SAMTools SNP 336446 336446 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1804 SAMTools SNP 336809 336809 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold1804 SAMTools SNP 337086 337086 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C115:99 scaffold1804 SAMTools SNP 337128 337128 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C129:99 scaffold1805 SAMTools SNP 1242 1242 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 1250 1250 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 1308 1308 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C3:6 scaffold1805 SAMTools SNP 1646 1646 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1805 SAMTools SNP 2289 2289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1805 SAMTools SNP 2303 2303 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1805 SAMTools SNP 2506 2506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1805 SAMTools SNP 3255 3255 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1805 SAMTools SNP 3306 3306 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1805 SAMTools SNP 3420 3420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1805 SAMTools SNP 3512 3512 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C23%2C67%2C18%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.28%2C3.2e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1805 SAMTools SNP 3793 3793 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C190%2C0:99 scaffold1805 SAMTools SNP 4027 4027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1805 SAMTools SNP 5804 5804 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.26%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1805 SAMTools SNP 5852 5852 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1805 SAMTools SNP 6073 6073 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1805 SAMTools SNP 10479 10479 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C31%2C38%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.048%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold1805 SAMTools SNP 10640 10640 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1805 SAMTools SNP 10661 10661 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C39%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.065%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C121:99 scaffold1805 SAMTools SNP 12825 12825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1805 SAMTools SNP 13151 13151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C10%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1805 SAMTools SNP 13373 13373 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C8%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1805 SAMTools SNP 14447 14447 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1805 SAMTools SNP 14462 14462 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1805 SAMTools SNP 65686 65686 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1805 SAMTools SNP 76528 76528 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C57:43 scaffold1805 SAMTools SNP 77759 77759 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1805 SAMTools SNP 105623 105623 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 106946 106946 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 111670 111670 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold1805 SAMTools SNP 126125 126125 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1805 SAMTools SNP 126164 126164 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1805 SAMTools SNP 126596 126596 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1805 SAMTools SNP 137001 137001 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C30%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D1%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold1805 SAMTools SNP 138757 138757 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1805 SAMTools SNP 145098 145098 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1805 SAMTools SNP 145110 145110 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1805 SAMTools SNP 145696 145696 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1805 SAMTools SNP 146829 146829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1805 SAMTools SNP 146865 146865 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1805 SAMTools SNP 146943 146943 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1805 SAMTools SNP 146952 146952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1805 SAMTools SNP 147456 147456 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.54%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C229:99 scaffold1805 SAMTools SNP 148735 148735 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1805 SAMTools SNP 154233 154233 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold1805 SAMTools SNP 154834 154834 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.68%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1805 SAMTools SNP 155121 155121 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.061%2C0.01%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1805 SAMTools SNP 155129 155129 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.026%2C0.0002%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1805 SAMTools SNP 155131 155131 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.058%2C0.0023%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1805 SAMTools SNP 155142 155142 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0031%2C6.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1805 SAMTools SNP 155221 155221 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.31%2C0.29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1805 SAMTools SNP 155242 155242 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.0089%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C250:99 scaffold1805 SAMTools SNP 188348 188348 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1805 SAMTools SNP 188361 188361 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1805 SAMTools SNP 188964 188964 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1805 SAMTools SNP 189012 189012 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C184:96 scaffold1805 SAMTools SNP 191106 191106 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.47%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold1805 SAMTools SNP 191184 191184 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1805 SAMTools SNP 191687 191687 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1805 SAMTools SNP 191727 191727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold1805 SAMTools SNP 192307 192307 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1805 SAMTools SNP 192381 192381 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.45%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1805 SAMTools SNP 192400 192400 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1805 SAMTools SNP 192412 192412 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.087%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1805 SAMTools SNP 193096 193096 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1805 SAMTools SNP 193115 193115 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1805 SAMTools SNP 193139 193139 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1805 SAMTools SNP 193151 193151 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1805 SAMTools SNP 194736 194736 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C243:99 scaffold1805 SAMTools SNP 196095 196095 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1805 SAMTools SNP 196127 196127 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C10%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1805 SAMTools SNP 196763 196763 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C0.1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1805 SAMTools SNP 196793 196793 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C72%2C1%2C21%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1805 SAMTools SNP 196815 196815 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C232:63 scaffold1805 SAMTools SNP 196820 196820 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C232:63 scaffold1805 SAMTools SNP 198229 198229 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C234:99 scaffold1805 SAMTools SNP 198230 198230 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.23%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C217:56 scaffold1805 SAMTools SNP 198232 198232 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1805 SAMTools SNP 198240 198240 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1805 SAMTools SNP 198247 198247 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 247968 247968 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1805 SAMTools SNP 256443 256443 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1805 SAMTools SNP 256602 256602 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1805 SAMTools SNP 259095 259095 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1805 SAMTools SNP 261353 261353 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1805 SAMTools SNP 269853 269853 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold1805 SAMTools SNP 275580 275580 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1805 SAMTools SNP 287569 287569 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1805 SAMTools SNP 299012 299012 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D44%3BFQ%3D105%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C153:99 scaffold1805 SAMTools SNP 302400 302400 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1805 SAMTools SNP 302938 302938 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1806 SAMTools SNP 9925 9925 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C234:55 scaffold1806 SAMTools SNP 12511 12511 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1806 SAMTools SNP 13652 13652 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.044%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold1806 SAMTools SNP 14504 14504 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1806 SAMTools SNP 14845 14845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1806 SAMTools SNP 14884 14884 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1806 SAMTools SNP 15335 15335 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold1806 SAMTools SNP 15353 15353 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1806 SAMTools SNP 15385 15385 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1806 SAMTools SNP 15585 15585 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1806 SAMTools SNP 15615 15615 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1806 SAMTools SNP 15640 15640 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1806 SAMTools SNP 20299 20299 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.086%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1806 SAMTools SNP 24678 24678 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1806 SAMTools SNP 29300 29300 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0343%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1806 SAMTools SNP 29572 29572 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C15%2C29%3BMQ%3D33%3BFQ%3D205%3BPV4%3D0.3%2C0.13%2C0.028%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1806 SAMTools SNP 29966 29966 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C7%3BMQ%3D49%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1806 SAMTools SNP 33387 33387 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1806 SAMTools SNP 33388 33388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1806 SAMTools SNP 33414 33414 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C104:40 scaffold1806 SAMTools SNP 33456 33456 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1806 SAMTools SNP 33509 33509 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C12%2C0:21 scaffold1806 SAMTools SNP 35463 35463 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1806 SAMTools SNP 36369 36369 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1806 SAMTools SNP 46026 46026 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C241:74 scaffold1806 SAMTools SNP 46185 46185 16.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1806 SAMTools SNP 56717 56717 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C30%2C0:51 scaffold1806 SAMTools SNP 78410 78410 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1806 SAMTools SNP 130760 130760 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1806 SAMTools SNP 145136 145136 39.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1807 SAMTools SNP 40471 40471 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1807 SAMTools SNP 89689 89689 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C108%2C0:99 scaffold1807 SAMTools SNP 103113 103113 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1808 SAMTools SNP 998 998 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 1027 1027 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 1089 1089 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 1110 1110 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1808 SAMTools SNP 1598 1598 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1808 SAMTools SNP 2598 2598 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.8e-12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C69:28 scaffold1808 SAMTools SNP 10951 10951 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1808 SAMTools SNP 11320 11320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 13907 13907 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1808 SAMTools SNP 13931 13931 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1808 SAMTools SNP 14780 14780 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C231:99 scaffold1808 SAMTools SNP 14807 14807 80.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold1808 SAMTools SNP 14876 14876 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1808 SAMTools SNP 15365 15365 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1808 SAMTools SNP 15753 15753 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1808 SAMTools SNP 15810 15810 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1808 SAMTools SNP 15825 15825 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1808 SAMTools SNP 16279 16279 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1808 SAMTools SNP 16915 16915 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C242:98 scaffold1808 SAMTools SNP 17320 17320 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold1808 SAMTools SNP 17615 17615 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1808 SAMTools SNP 17697 17697 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1808 SAMTools SNP 19019 19019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1808 SAMTools SNP 19093 19093 116 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C18%2C143%2C0%2C140:21 scaffold1808 SAMTools SNP 19296 19296 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1808 SAMTools SNP 19635 19635 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1808 SAMTools SNP 20980 20980 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1808 SAMTools SNP 20998 20998 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1808 SAMTools SNP 21199 21199 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 23550 23550 38.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1808 SAMTools SNP 25047 25047 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 36080 36080 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1808 SAMTools SNP 65437 65437 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1808 SAMTools SNP 92419 92419 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 93671 93671 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1808 SAMTools SNP 128607 128607 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1808 SAMTools SNP 131994 131994 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1808 SAMTools SNP 137111 137111 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C55:58 scaffold1808 SAMTools SNP 137761 137761 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1808 SAMTools SNP 140662 140662 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1808 SAMTools SNP 141059 141059 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1808 SAMTools SNP 141306 141306 34.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C15:18 scaffold1808 SAMTools SNP 141330 141330 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C66:31 scaffold1808 SAMTools SNP 148962 148962 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D0.44%2C5.4e-10%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold1808 SAMTools SNP 151617 151617 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1808 SAMTools SNP 152329 152329 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.34%2C1.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1808 SAMTools SNP 152695 152695 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C8%2C14%3BMQ%3D49%3BFQ%3D70%3BPV4%3D0.14%2C3e-29%2C0.31%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C132:99 scaffold1808 SAMTools SNP 152789 152789 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.68%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1808 SAMTools SNP 152842 152842 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C13%2C1%3BMQ%3D49%3BFQ%3D81%3BPV4%3D0.0071%2C4.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1808 SAMTools SNP 163092 163092 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1808 SAMTools SNP 172980 172980 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1808 SAMTools SNP 173134 173134 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D747%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C403%2C224%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D7.2e-96%2C5.7e-192%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1810 SAMTools SNP 11433 11433 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 11465 11465 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 11544 11544 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 31814 31814 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.067%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C194:39 scaffold1810 SAMTools SNP 31830 31830 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1810 SAMTools SNP 32258 32258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 48959 48959 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1810 SAMTools SNP 69675 69675 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1810 SAMTools SNP 69708 69708 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1810 SAMTools SNP 69711 69711 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1810 SAMTools SNP 73653 73653 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 74100 74100 37.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold1810 SAMTools SNP 76606 76606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C398%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1810 SAMTools SNP 78588 78588 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C35%2C101%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 81192 81192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C74%2C63%3BMQ%3D50%3BFQ%3D-252%3BPV4%3D0.023%2C0.18%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C225%2C0:99 scaffold1810 SAMTools SNP 83466 83466 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C27%2C55%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 89041 89041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1810 SAMTools SNP 89059 89059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C64%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1810 SAMTools SNP 89124 89124 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1810 SAMTools SNP 124170 124170 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 124379 124379 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1810 SAMTools SNP 124675 124675 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1810 SAMTools SNP 134580 134580 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 134587 134587 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.24%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C211:99 scaffold1810 SAMTools SNP 141139 141139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1810 SAMTools SNP 141178 141178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1810 SAMTools SNP 141184 141184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1810 SAMTools SNP 141619 141619 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 142377 142377 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 142388 142388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 142532 142532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 142804 142804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C37%2C40%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 143425 143425 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C2%2C12%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1810 SAMTools SNP 149194 149194 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C14%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D6.3e-05%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1810 SAMTools SNP 149217 149217 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 149300 149300 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C12%2C63%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 154212 154212 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D1%2C0.095%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C41:37 scaffold1810 SAMTools SNP 155123 155123 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C39%2C34%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 155168 155168 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C83%2C0%2C52%3BMQ%3D50%3BFQ%3D178%3BPV4%3D3.3e-05%2C0.23%2C1%2C2.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1810 SAMTools SNP 155219 155219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C74%2C13%2C57%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 156048 156048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C47%2C11%2C54%3BMQ%3D43%3BFQ%3D222%3BPV4%3D0.047%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1810 SAMTools SNP 156096 156096 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C10%2C8%3BMQ%3D25%3BFQ%3D35%3BPV4%3D0.012%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C62:65 scaffold1810 SAMTools SNP 159483 159483 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1810 SAMTools SNP 162650 162650 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C32%2C27%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C9.2e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 164936 164936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1810 SAMTools SNP 164943 164943 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1810 SAMTools SNP 170110 170110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 170119 170119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 170152 170152 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.37%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1810 SAMTools SNP 170197 170197 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.52%2C4.8e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1810 SAMTools SNP 170714 170714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1810 SAMTools SNP 170720 170720 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1810 SAMTools SNP 171140 171140 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold1810 SAMTools SNP 171145 171145 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 171158 171158 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1810 SAMTools SNP 172941 172941 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold1810 SAMTools SNP 172950 172950 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.27%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1810 SAMTools SNP 172999 172999 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1810 SAMTools SNP 174892 174892 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1810 SAMTools SNP 174999 174999 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold1810 SAMTools SNP 176551 176551 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 179364 179364 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold1810 SAMTools SNP 180308 180308 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C30%2C0:57 scaffold1810 SAMTools SNP 180414 180414 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C26%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C2.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C247:75 scaffold1810 SAMTools SNP 181755 181755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1810 SAMTools SNP 182268 182268 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C4%3BMQ%3D34%3BFQ%3D4.13%3BPV4%3D0.24%2C2.2e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C29:32 scaffold1810 SAMTools SNP 182349 182349 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C1%3BMQ%3D45%3BFQ%3D65.6%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C103:96 scaffold1810 SAMTools SNP 182675 182675 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1811 SAMTools SNP 2044 2044 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1811 SAMTools SNP 2048 2048 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1811 SAMTools SNP 3356 3356 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1811 SAMTools SNP 3390 3390 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1811 SAMTools SNP 3801 3801 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C101:77 scaffold1811 SAMTools SNP 3834 3834 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1811 SAMTools SNP 38514 38514 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1811 SAMTools SNP 65622 65622 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1811 SAMTools SNP 93273 93273 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1811 SAMTools SNP 93453 93453 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1812 SAMTools SNP 19298 19298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 19673 19673 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 22112 22112 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 22133 22133 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 24759 24759 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 24845 24845 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1812 SAMTools SNP 25941 25941 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1812 SAMTools SNP 25985 25985 67.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1812 SAMTools SNP 26004 26004 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.29%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C160:76 scaffold1812 SAMTools SNP 26052 26052 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold1812 SAMTools SNP 27872 27872 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1812 SAMTools SNP 27960 27960 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00074%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1812 SAMTools SNP 28662 28662 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.31%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C118:93 scaffold1812 SAMTools SNP 30305 30305 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1812 SAMTools SNP 30407 30407 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1812 SAMTools SNP 30458 30458 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.31%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1812 SAMTools SNP 30904 30904 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1812 SAMTools SNP 30931 30931 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D30.8%3BPV4%3D1%2C8.4e-07%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C71:61 scaffold1812 SAMTools SNP 32978 32978 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1812 SAMTools SNP 106800 106800 19.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold1812 SAMTools SNP 107174 107174 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C114%2C0:99 scaffold1812 SAMTools SNP 107427 107427 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1812 SAMTools SNP 107446 107446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1812 SAMTools SNP 107486 107486 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1812 SAMTools SNP 107991 107991 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1.4e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C26:29 scaffold1813 SAMTools SNP 710 710 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1813 SAMTools SNP 2111 2111 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1813 SAMTools SNP 2126 2126 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1813 SAMTools SNP 2839 2839 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1813 SAMTools SNP 6297 6297 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1813 SAMTools SNP 6315 6315 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1813 SAMTools SNP 8713 8713 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C36%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1813 SAMTools SNP 8739 8739 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1813 SAMTools SNP 10020 10020 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1813 SAMTools SNP 10057 10057 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 10177 10177 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 12215 12215 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 18254 18254 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1813 SAMTools SNP 18261 18261 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1813 SAMTools SNP 20285 20285 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 27104 27104 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1813 SAMTools SNP 33803 33803 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1813 SAMTools SNP 39385 39385 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1813 SAMTools SNP 47800 47800 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1813 SAMTools SNP 58942 58942 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.17%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C217:51 scaffold1813 SAMTools SNP 59125 59125 38.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1813 SAMTools SNP 59686 59686 28.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1813 SAMTools SNP 60328 60328 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.38%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C200:57 scaffold1813 SAMTools SNP 108302 108302 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1813 SAMTools SNP 114604 114604 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 121754 121754 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1813 SAMTools SNP 121795 121795 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1813 SAMTools SNP 124220 124220 95.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C21%2C0:39 scaffold1813 SAMTools SNP 124287 124287 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1813 SAMTools SNP 124941 124941 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1813 SAMTools SNP 125434 125434 40.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1813 SAMTools SNP 127377 127377 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 127805 127805 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C36%2C173%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 127841 127841 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C8%2C135%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.49%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 127886 127886 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C73%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1813 SAMTools SNP 128215 128215 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.023%2C0.0035%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1813 SAMTools SNP 128227 128227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C16%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1813 SAMTools SNP 128242 128242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C19%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.3%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold1813 SAMTools SNP 128266 128266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1813 SAMTools SNP 128449 128449 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 128683 128683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1813 SAMTools SNP 129539 129539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D527%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C243%2C19%2C223%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1.6e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 129637 129637 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 129953 129953 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C25%2C10%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0031%2C1.5e-08%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1813 SAMTools SNP 130612 130612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C15%2C7%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 130829 130829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C27%2C28%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 130979 130979 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 131204 131204 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C23%2C27%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.56%2C2.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1813 SAMTools SNP 131615 131615 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C49%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C193%2C0:99 scaffold1813 SAMTools SNP 131684 131684 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1813 SAMTools SNP 131691 131691 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1813 SAMTools SNP 132588 132588 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.12%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold1813 SAMTools SNP 132609 132609 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 132827 132827 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C15%2C10%2C24%3BMQ%3D50%3BFQ%3D145%3BPV4%3D2.7e-11%2C6.7e-18%2C1%2C4.5e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1813 SAMTools SNP 132963 132963 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C239%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1813 SAMTools SNP 133188 133188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1813 SAMTools SNP 133337 133337 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1813 SAMTools SNP 133656 133656 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1813 SAMTools SNP 133829 133829 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.059%2C2.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1813 SAMTools SNP 133900 133900 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C22%2C57%2C7%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.036%2C8.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1813 SAMTools SNP 133940 133940 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C143%2C17%2C22%3BMQ%3D50%3BFQ%3D163%3BPV4%3D5.1e-06%2C8.1e-15%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1813 SAMTools SNP 134161 134161 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C167%2C3%2C61%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1813 SAMTools SNP 134290 134290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1813 SAMTools SNP 134735 134735 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1813 SAMTools SNP 134769 134769 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1813 SAMTools SNP 134770 134770 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.56%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1813 SAMTools SNP 134773 134773 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D7.7e-07%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1813 SAMTools SNP 134776 134776 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1.7e-06%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1813 SAMTools SNP 136837 136837 88.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold1813 SAMTools SNP 136913 136913 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1813 SAMTools SNP 136941 136941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1813 SAMTools SNP 138929 138929 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold1813 SAMTools SNP 139196 139196 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.43%2C0.026%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C107:70 scaffold1813 SAMTools SNP 139293 139293 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1813 SAMTools SNP 139966 139966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1813 SAMTools SNP 139978 139978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1813 SAMTools SNP 141072 141072 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.051%2C2.2e-09%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1813 SAMTools SNP 141074 141074 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.26%2C0.00069%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1813 SAMTools SNP 141081 141081 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C5.9e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1814 SAMTools SNP 551 551 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1814 SAMTools SNP 686 686 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1814 SAMTools SNP 710 710 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1814 SAMTools SNP 30173 30173 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C3%3BMQ%3D48%3BFQ%3D23%3BPV4%3D1%2C1.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C173:53 scaffold1815 SAMTools SNP 17558 17558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 17615 17615 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 61072 61072 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1815 SAMTools SNP 63810 63810 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1815 SAMTools SNP 65945 65945 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 77034 77034 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0034%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C150:39 scaffold1815 SAMTools SNP 77149 77149 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold1815 SAMTools SNP 83885 83885 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C23:26 scaffold1815 SAMTools SNP 83919 83919 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1815 SAMTools SNP 85112 85112 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1815 SAMTools SNP 88128 88128 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1815 SAMTools SNP 88538 88538 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1815 SAMTools SNP 91176 91176 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1815 SAMTools SNP 92345 92345 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1815 SAMTools SNP 93173 93173 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1815 SAMTools SNP 93749 93749 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1815 SAMTools SNP 93797 93797 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0020%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1815 SAMTools SNP 98970 98970 10.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold1815 SAMTools SNP 100690 100690 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1815 SAMTools SNP 101353 101353 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold1815 SAMTools SNP 101534 101534 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1815 SAMTools SNP 101956 101956 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1815 SAMTools SNP 103050 103050 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold1815 SAMTools SNP 109998 109998 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1815 SAMTools SNP 141305 141305 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1815 SAMTools SNP 141347 141347 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1815 SAMTools SNP 141473 141473 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C127:77 scaffold1815 SAMTools SNP 158766 158766 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C4.3e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C188:41 scaffold1815 SAMTools SNP 158799 158799 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.9e-15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C188:42 scaffold1815 SAMTools SNP 159849 159849 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.31%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C251:98 scaffold1815 SAMTools SNP 160882 160882 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C25%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1815 SAMTools SNP 161653 161653 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1815 SAMTools SNP 161812 161812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1815 SAMTools SNP 161814 161814 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1815 SAMTools SNP 162502 162502 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C1%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1815 SAMTools SNP 162536 162536 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C1%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.65%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1815 SAMTools SNP 162568 162568 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1815 SAMTools SNP 163564 163564 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1815 SAMTools SNP 163578 163578 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.2%2C1%2C1%2C4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1815 SAMTools SNP 164716 164716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1815 SAMTools SNP 167533 167533 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.69%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1815 SAMTools SNP 167570 167570 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1815 SAMTools SNP 168881 168881 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1815 SAMTools SNP 169310 169310 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1815 SAMTools SNP 169878 169878 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.00019%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1815 SAMTools SNP 169923 169923 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.24%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C233:99 scaffold1815 SAMTools SNP 178542 178542 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.65%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1815 SAMTools SNP 180771 180771 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1815 SAMTools SNP 198126 198126 4.11 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1815 SAMTools SNP 198149 198149 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C195:31 scaffold1815 SAMTools SNP 198597 198597 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1815 SAMTools SNP 201020 201020 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D47%3BFQ%3D98%3BPV4%3D1%2C0.27%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C154:99 scaffold1815 SAMTools SNP 201100 201100 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1815 SAMTools SNP 201772 201772 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1815 SAMTools SNP 202058 202058 32.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C6:9 scaffold1815 SAMTools SNP 203357 203357 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 203564 203564 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1815 SAMTools SNP 203570 203570 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1815 SAMTools SNP 203575 203575 17.1 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C16%2C13%2C47%2C0%2C44:6 scaffold1815 SAMTools SNP 206672 206672 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1815 SAMTools SNP 221193 221193 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C87%2C86%2C79%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.041%2C0.0082%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1815 SAMTools SNP 221488 221488 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C204%2C7%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1815 SAMTools SNP 222728 222728 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1815 SAMTools SNP 222947 222947 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1815 SAMTools SNP 223474 223474 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1815 SAMTools SNP 224292 224292 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1815 SAMTools SNP 225276 225276 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 225295 225295 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1815 SAMTools SNP 225473 225473 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.25%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C59:62 scaffold1815 SAMTools SNP 225492 225492 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1815 SAMTools SNP 225557 225557 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1815 SAMTools SNP 225561 225561 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1815 SAMTools SNP 226295 226295 6.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C1%2C0:4 scaffold1815 SAMTools SNP 228169 228169 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.17%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1815 SAMTools SNP 228217 228217 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1815 SAMTools SNP 228262 228262 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.19%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1815 SAMTools SNP 229618 229618 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1815 SAMTools SNP 230062 230062 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.32%2C5.2e-06%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1815 SAMTools SNP 230674 230674 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C24%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.41%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1815 SAMTools SNP 230745 230745 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold1816 SAMTools SNP 13172 13172 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 13726 13726 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 13727 13727 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 32309 32309 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1816 SAMTools SNP 34999 34999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1816 SAMTools SNP 35956 35956 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C40%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 35974 35974 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C24%2C27%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.00028%2C0.028%2C0.07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1816 SAMTools SNP 37851 37851 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C5%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.013%2C0.044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 37931 37931 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C8%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 38646 38646 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1816 SAMTools SNP 38658 38658 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 38667 38667 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold1816 SAMTools SNP 39414 39414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1816 SAMTools SNP 39482 39482 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C2%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1816 SAMTools SNP 40005 40005 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C43%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1816 SAMTools SNP 40460 40460 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C18%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 40487 40487 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C8%2C30%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1816 SAMTools SNP 41069 41069 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C10%2C43%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.034%2C5.5e-17%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1816 SAMTools SNP 41106 41106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1816 SAMTools SNP 41136 41136 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C0.25%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 41157 41157 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C92%2C8%2C33%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.3%2C1.9e-31%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1816 SAMTools SNP 42341 42341 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C2%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.58%2C0.00086%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1816 SAMTools SNP 42382 42382 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.14%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1816 SAMTools SNP 43239 43239 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold1816 SAMTools SNP 43978 43978 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1816 SAMTools SNP 43984 43984 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1816 SAMTools SNP 44390 44390 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1816 SAMTools SNP 44672 44672 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1816 SAMTools SNP 63214 63214 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 63455 63455 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 66492 66492 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 68998 68998 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 69200 69200 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1816 SAMTools SNP 72839 72839 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold1816 SAMTools SNP 73768 73768 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold1816 SAMTools SNP 79117 79117 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1816 SAMTools SNP 79179 79179 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1816 SAMTools SNP 94132 94132 47.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold1816 SAMTools SNP 94263 94263 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1816 SAMTools SNP 100172 100172 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 100504 100504 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 100864 100864 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 100872 100872 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 101687 101687 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C19%2C21%3BMQ%3D38%3BFQ%3D-74%3BPV4%3D0.0014%2C1.4e-06%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C47%2C0:91 scaffold1816 SAMTools SNP 102710 102710 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C40%3BMQ%3D50%3BFQ%3D-104%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C77%2C0:99 scaffold1816 SAMTools SNP 103002 103002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1816 SAMTools SNP 103130 103130 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1816 SAMTools SNP 103595 103595 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1816 SAMTools SNP 103602 103602 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1816 SAMTools SNP 127689 127689 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1816 SAMTools SNP 195711 195711 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1816 SAMTools SNP 224826 224826 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1816 SAMTools SNP 225487 225487 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 225508 225508 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 226577 226577 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold1816 SAMTools SNP 227000 227000 34.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1816 SAMTools SNP 239882 239882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 240353 240353 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1816 SAMTools SNP 252629 252629 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 254030 254030 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold1816 SAMTools SNP 267976 267976 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 275686 275686 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1816 SAMTools SNP 276967 276967 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 277106 277106 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C27%2C0:51 scaffold1816 SAMTools SNP 279084 279084 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1816 SAMTools SNP 279528 279528 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1816 SAMTools SNP 281085 281085 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1816 SAMTools SNP 281100 281100 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold1816 SAMTools SNP 284137 284137 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.26%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1816 SAMTools SNP 287232 287232 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C200:33 scaffold1816 SAMTools SNP 287292 287292 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1816 SAMTools SNP 299443 299443 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C176:54 scaffold1816 SAMTools SNP 327375 327375 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1816 SAMTools SNP 327729 327729 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 329524 329524 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C4%2C0%3BMQ%3D48%3BFQ%3D50%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1816 SAMTools SNP 329529 329529 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D48%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1816 SAMTools SNP 334185 334185 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C202:41 scaffold1816 SAMTools SNP 340137 340137 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C0%2C11%3BMQ%3D42%3BFQ%3D24%3BPV4%3D0.0012%2C2.4e-12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1816 SAMTools SNP 343845 343845 136 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D24%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C78%2C0:99 scaffold1816 SAMTools SNP 343848 343848 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D24%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C78%2C0:99 scaffold1816 SAMTools SNP 343956 343956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D37%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1816 SAMTools SNP 344010 344010 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1816 SAMTools SNP 344052 344052 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold1816 SAMTools SNP 346749 346749 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.22%2C7e-07%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1816 SAMTools SNP 347244 347244 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C39%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C178%2C0:99 scaffold1816 SAMTools SNP 347583 347583 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.048%2C0.00042%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C165:40 scaffold1816 SAMTools SNP 348065 348065 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C39%2C0:75 scaffold1816 SAMTools SNP 348089 348089 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold1816 SAMTools SNP 348239 348239 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1816 SAMTools SNP 349303 349303 38.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold1816 SAMTools SNP 351119 351119 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C224:99 scaffold1816 SAMTools SNP 352461 352461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.15%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1816 SAMTools SNP 353154 353154 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 353160 353160 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 353213 353213 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1816 SAMTools SNP 353238 353238 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1816 SAMTools SNP 353438 353438 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1816 SAMTools SNP 353451 353451 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1816 SAMTools SNP 353778 353778 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1816 SAMTools SNP 353793 353793 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1816 SAMTools SNP 353841 353841 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1816 SAMTools SNP 353850 353850 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1816 SAMTools SNP 354817 354817 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1816 SAMTools SNP 354822 354822 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1816 SAMTools SNP 354879 354879 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1816 SAMTools SNP 354909 354909 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1816 SAMTools SNP 355544 355544 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 356147 356147 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1816 SAMTools SNP 356695 356695 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1816 SAMTools SNP 361831 361831 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1817 SAMTools SNP 39152 39152 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1817 SAMTools SNP 39220 39220 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1817 SAMTools SNP 44990 44990 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1817 SAMTools SNP 45525 45525 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1817 SAMTools SNP 45886 45886 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C39%2C0:75 scaffold1817 SAMTools SNP 45892 45892 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C39%2C0:75 scaffold1817 SAMTools SNP 46389 46389 3.25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BAF1%3D0.8292%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C1%3BMQ%3D19%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:29%2C0%2C1:8 scaffold1817 SAMTools SNP 46879 46879 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C0.18%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C206:28 scaffold1817 SAMTools SNP 47297 47297 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C10%3BMQ%3D46%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1817 SAMTools SNP 47335 47335 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.057%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C234:96 scaffold1817 SAMTools SNP 47354 47354 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1817 SAMTools SNP 47369 47369 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1817 SAMTools SNP 47749 47749 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1817 SAMTools SNP 48192 48192 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C196:99 scaffold1817 SAMTools SNP 50995 50995 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1817 SAMTools SNP 51686 51686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C4%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1817 SAMTools SNP 51731 51731 161 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D47%3BFQ%3D-106;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C140%2C61%2C255%2C0%2C239:99 scaffold1817 SAMTools SNP 51734 51734 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C45%3BMQ%3D48%3BFQ%3D-13.2%3BPV4%3D7.5e-09%2C0.071%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C14:17 scaffold1817 SAMTools SNP 53438 53438 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C0%2C123%3BMQ%3D49%3BFQ%3D-224%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold1817 SAMTools SNP 110902 110902 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1818 SAMTools SNP 3719 3719 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1818 SAMTools SNP 3729 3729 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1818 SAMTools SNP 3962 3962 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1818 SAMTools SNP 9205 9205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1818 SAMTools SNP 9723 9723 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C30%2C0:57 scaffold1818 SAMTools SNP 14236 14236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1818 SAMTools SNP 17569 17569 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1818 SAMTools SNP 18821 18821 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C0.28%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1818 SAMTools SNP 19067 19067 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.09%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1818 SAMTools SNP 19978 19978 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1818 SAMTools SNP 19979 19979 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1818 SAMTools SNP 20217 20217 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1818 SAMTools SNP 20244 20244 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1818 SAMTools SNP 20248 20248 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1818 SAMTools SNP 22635 22635 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1818 SAMTools SNP 23815 23815 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C173:99 scaffold1818 SAMTools SNP 23850 23850 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1818 SAMTools SNP 24036 24036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C4%2C24%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.11%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1818 SAMTools SNP 24382 24382 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C32%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C235:99 scaffold1818 SAMTools SNP 24395 24395 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C22%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C246:99 scaffold1818 SAMTools SNP 26218 26218 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.53%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1818 SAMTools SNP 26300 26300 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1818 SAMTools SNP 28430 28430 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.64%2C0.37%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1818 SAMTools SNP 28433 28433 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.64%2C0.26%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1818 SAMTools SNP 28981 28981 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.13%2C0.044%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1818 SAMTools SNP 30229 30229 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.51%2C1.7e-09%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1818 SAMTools SNP 30235 30235 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.26%2C1.6e-05%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1818 SAMTools SNP 30258 30258 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C48%2C0:93 scaffold1818 SAMTools SNP 30578 30578 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.18%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold1818 SAMTools SNP 31434 31434 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.24%2C0.0031%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1818 SAMTools SNP 31499 31499 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1818 SAMTools SNP 31908 31908 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1818 SAMTools SNP 32056 32056 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1818 SAMTools SNP 32273 32273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1818 SAMTools SNP 32293 32293 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1818 SAMTools SNP 32548 32548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1818 SAMTools SNP 32929 32929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1818 SAMTools SNP 32982 32982 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1818 SAMTools SNP 33012 33012 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1818 SAMTools SNP 33548 33548 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold1818 SAMTools SNP 33590 33590 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1818 SAMTools SNP 34278 34278 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1818 SAMTools SNP 34294 34294 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold1818 SAMTools SNP 35895 35895 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.49%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1818 SAMTools SNP 36146 36146 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1818 SAMTools SNP 36185 36185 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C105%2C0%2C27%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.58%2C6.9e-12%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1818 SAMTools SNP 36847 36847 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1818 SAMTools SNP 37455 37455 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.019%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1818 SAMTools SNP 37753 37753 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.33%2C0.49%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1818 SAMTools SNP 38025 38025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1818 SAMTools SNP 39326 39326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1818 SAMTools SNP 39374 39374 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C0%3BMQ%3D48%3BFQ%3D156%3BPV4%3D0.0072%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1818 SAMTools SNP 41205 41205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C65%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1818 SAMTools SNP 41242 41242 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C41%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C131:99 scaffold1818 SAMTools SNP 48319 48319 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1818 SAMTools SNP 49169 49169 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C9%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.047%2C6.5e-06%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1818 SAMTools SNP 49230 49230 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1818 SAMTools SNP 49884 49884 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1818 SAMTools SNP 49931 49931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1818 SAMTools SNP 49952 49952 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1818 SAMTools SNP 51338 51338 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1818 SAMTools SNP 51376 51376 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1819 SAMTools SNP 15163 15163 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1819 SAMTools SNP 15205 15205 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.0026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C174:34 scaffold1819 SAMTools SNP 15989 15989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1819 SAMTools SNP 56704 56704 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1819 SAMTools SNP 56711 56711 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1819 SAMTools SNP 57196 57196 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.24%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1819 SAMTools SNP 59340 59340 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1819 SAMTools SNP 59353 59353 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1819 SAMTools SNP 76490 76490 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1819 SAMTools SNP 78974 78974 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1819 SAMTools SNP 79228 79228 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C21%2C0:39 scaffold1819 SAMTools SNP 79304 79304 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1819 SAMTools SNP 80683 80683 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1819 SAMTools SNP 87362 87362 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1819 SAMTools SNP 87395 87395 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1819 SAMTools SNP 88685 88685 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D47%3BFQ%3D45%3BPV4%3D1%2C0.00011%2C0.18%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C154:75 scaffold1819 SAMTools SNP 88714 88714 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1819 SAMTools SNP 94532 94532 212 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C25%2C0%3BMQ%3D49%3BFQ%3D215%3BPV4%3D0.012%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1819 SAMTools SNP 96290 96290 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C18%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1819 SAMTools SNP 96335 96335 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C20%3BMQ%3D48%3BFQ%3D153%3BPV4%3D1%2C0.42%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1819 SAMTools SNP 106430 106430 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1819 SAMTools SNP 106635 106635 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1819 SAMTools SNP 106662 106662 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1819 SAMTools SNP 106670 106670 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1819 SAMTools SNP 107364 107364 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C0.17%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1819 SAMTools SNP 107409 107409 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1819 SAMTools SNP 107424 107424 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C254:99 scaffold1819 SAMTools SNP 107439 107439 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C0.31%2C1%2C6.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold1819 SAMTools SNP 107460 107460 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1819 SAMTools SNP 107636 107636 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1819 SAMTools SNP 107676 107676 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1819 SAMTools SNP 107767 107767 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C60%2C0:99 scaffold1819 SAMTools SNP 108432 108432 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1819 SAMTools SNP 109334 109334 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1819 SAMTools SNP 109377 109377 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.31%2C0.15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C134:99 scaffold1819 SAMTools SNP 109391 109391 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1819 SAMTools SNP 109961 109961 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C84%2C0:99 scaffold1819 SAMTools SNP 109993 109993 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.8e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1819 SAMTools SNP 110302 110302 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold1819 SAMTools SNP 110502 110502 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1819 SAMTools SNP 124094 124094 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.23%2C1%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1819 SAMTools SNP 124780 124780 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1819 SAMTools SNP 124799 124799 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1819 SAMTools SNP 127227 127227 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C235:99 scaffold1819 SAMTools SNP 127238 127238 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1819 SAMTools SNP 129609 129609 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1819 SAMTools SNP 130273 130273 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1819 SAMTools SNP 136990 136990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1819 SAMTools SNP 138447 138447 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1819 SAMTools SNP 139261 139261 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1819 SAMTools SNP 139262 139262 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1819 SAMTools SNP 140969 140969 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1819 SAMTools SNP 142374 142374 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1819 SAMTools SNP 142375 142375 12 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C19%2C13%2C42%2C0%2C39:9 scaffold1819 SAMTools SNP 142635 142635 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.61%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1819 SAMTools SNP 143909 143909 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.031%2C7.7e-05%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1819 SAMTools SNP 143920 143920 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0049%2C9e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1819 SAMTools SNP 145030 145030 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1819 SAMTools SNP 145065 145065 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1819 SAMTools SNP 145618 145618 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C27%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1819 SAMTools SNP 146246 146246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1819 SAMTools SNP 147332 147332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1819 SAMTools SNP 151070 151070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1819 SAMTools SNP 151658 151658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1819 SAMTools SNP 151703 151703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1819 SAMTools SNP 152084 152084 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C19%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1819 SAMTools SNP 153573 153573 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.19%2C0.0032%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1819 SAMTools SNP 156352 156352 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C39%2C0:74 scaffold1821 SAMTools SNP 13181 13181 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 35659 35659 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1821 SAMTools SNP 35881 35881 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 39874 39874 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 39921 39921 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 44346 44346 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1821 SAMTools SNP 44892 44892 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1821 SAMTools SNP 44915 44915 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C141:60 scaffold1821 SAMTools SNP 45256 45256 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C233:44 scaffold1821 SAMTools SNP 45328 45328 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D48%3BFQ%3D124%3BPV4%3D1%2C1%2C0.17%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C164:99 scaffold1821 SAMTools SNP 45804 45804 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D47%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C183:99 scaffold1821 SAMTools SNP 45834 45834 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1821 SAMTools SNP 73170 73170 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1821 SAMTools SNP 73172 73172 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1821 SAMTools SNP 73983 73983 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1821 SAMTools SNP 81715 81715 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1821 SAMTools SNP 81718 81718 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1821 SAMTools SNP 82390 82390 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1821 SAMTools SNP 82643 82643 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1821 SAMTools SNP 82873 82873 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C197:99 scaffold1821 SAMTools SNP 82939 82939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1821 SAMTools SNP 83531 83531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1821 SAMTools SNP 84638 84638 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D39%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C45%2C0:87 scaffold1821 SAMTools SNP 84662 84662 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D39%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C45%2C0:87 scaffold1821 SAMTools SNP 84977 84977 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C13%2C0%3BMQ%3D46%3BFQ%3D168%3BPV4%3D1.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C195:99 scaffold1821 SAMTools SNP 86486 86486 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C14%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D3.1e-06%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C184:99 scaffold1821 SAMTools SNP 86498 86498 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1821 SAMTools SNP 86534 86534 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1821 SAMTools SNP 86576 86576 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1821 SAMTools SNP 87319 87319 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1821 SAMTools SNP 87807 87807 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1821 SAMTools SNP 88412 88412 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1821 SAMTools SNP 88417 88417 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1821 SAMTools SNP 88466 88466 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1821 SAMTools SNP 89023 89023 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1821 SAMTools SNP 90292 90292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 92489 92489 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1821 SAMTools SNP 93028 93028 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1821 SAMTools SNP 93400 93400 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold1821 SAMTools SNP 93424 93424 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1821 SAMTools SNP 93444 93444 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1821 SAMTools SNP 93475 93475 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1821 SAMTools SNP 93878 93878 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1821 SAMTools SNP 93926 93926 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 94539 94539 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 95904 95904 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1821 SAMTools SNP 96630 96630 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1821 SAMTools SNP 96979 96979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1821 SAMTools SNP 97408 97408 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1821 SAMTools SNP 97454 97454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1821 SAMTools SNP 97764 97764 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C35%2C79%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C8.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 98486 98486 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C159%2C65%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 99151 99151 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C33%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.43%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 99166 99166 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C33%2C8%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.1%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1821 SAMTools SNP 104871 104871 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1821 SAMTools SNP 106153 106153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1821 SAMTools SNP 106606 106606 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1821 SAMTools SNP 106630 106630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1821 SAMTools SNP 108100 108100 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C209:84 scaffold1821 SAMTools SNP 108274 108274 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1821 SAMTools SNP 108307 108307 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1821 SAMTools SNP 108314 108314 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1821 SAMTools SNP 109934 109934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1821 SAMTools SNP 109974 109974 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1821 SAMTools SNP 113547 113547 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1821 SAMTools SNP 113604 113604 177 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C40%2C25%2C203%2C0%2C200:27 scaffold1821 SAMTools SNP 115555 115555 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1821 SAMTools SNP 123374 123374 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D5%2C0%2C46%2C7%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C6.5e-10%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold1821 SAMTools SNP 123475 123475 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1821 SAMTools SNP 132907 132907 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1821 SAMTools SNP 133399 133399 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1821 SAMTools SNP 133423 133423 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 134342 134342 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1821 SAMTools SNP 134615 134615 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1821 SAMTools SNP 136149 136149 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1821 SAMTools SNP 136214 136214 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 136245 136245 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1821 SAMTools SNP 137093 137093 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1821 SAMTools SNP 139174 139174 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C78%2C0:99 scaffold1821 SAMTools SNP 139240 139240 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold1821 SAMTools SNP 145774 145774 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1821 SAMTools SNP 145783 145783 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold1821 SAMTools SNP 145819 145819 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold1821 SAMTools SNP 146328 146328 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1821 SAMTools SNP 153886 153886 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1821 SAMTools SNP 154031 154031 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1821 SAMTools SNP 155118 155118 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C14%2C25%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.82%2C3.3e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1821 SAMTools SNP 155541 155541 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.26%2C0.0033%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1821 SAMTools SNP 155769 155769 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1821 SAMTools SNP 156178 156178 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 156202 156202 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C21%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1821 SAMTools SNP 156259 156259 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C4.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 156272 156272 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C17%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C5e-10%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 157657 157657 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1821 SAMTools SNP 157668 157668 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1821 SAMTools SNP 158001 158001 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1821 SAMTools SNP 158387 158387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1821 SAMTools SNP 158396 158396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1821 SAMTools SNP 158861 158861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C40%2C36%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C0.14%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 158945 158945 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C0%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1821 SAMTools SNP 168472 168472 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1821 SAMTools SNP 169445 169445 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold1821 SAMTools SNP 169502 169502 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold1821 SAMTools SNP 169640 169640 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.085%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1821 SAMTools SNP 174370 174370 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C73%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C223%2C0:99 scaffold1821 SAMTools SNP 174435 174435 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C78%2C0:99 scaffold1821 SAMTools SNP 174697 174697 28.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1821 SAMTools SNP 174883 174883 5.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1821 SAMTools SNP 175227 175227 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold1821 SAMTools SNP 175252 175252 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C21%2C0:39 scaffold1821 SAMTools SNP 175702 175702 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1821 SAMTools SNP 175907 175907 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1821 SAMTools SNP 178593 178593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1821 SAMTools SNP 178642 178642 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.00082%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1821 SAMTools SNP 179763 179763 97.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold1821 SAMTools SNP 180512 180512 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1821 SAMTools SNP 180519 180519 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1821 SAMTools SNP 180527 180527 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1821 SAMTools SNP 180605 180605 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C8.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C69:52 scaffold1821 SAMTools SNP 180663 180663 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1821 SAMTools SNP 180669 180669 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1821 SAMTools SNP 180690 180690 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold1821 SAMTools SNP 181771 181771 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold1821 SAMTools SNP 182321 182321 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1821 SAMTools SNP 182357 182357 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1821 SAMTools SNP 182390 182390 221 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C31%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C246:99 scaffold1821 SAMTools SNP 182863 182863 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C25%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C252:99 scaffold1821 SAMTools SNP 182864 182864 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C25%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C252:99 scaffold1821 SAMTools SNP 195886 195886 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C18%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 196438 196438 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1821 SAMTools SNP 196462 196462 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C66%2C0:99 scaffold1821 SAMTools SNP 196517 196517 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C6%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.17%2C3.5e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1821 SAMTools SNP 199358 199358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1821 SAMTools SNP 199382 199382 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1821 SAMTools SNP 199418 199418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1821 SAMTools SNP 199442 199442 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1821 SAMTools SNP 199998 199998 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C21%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C154%2C0:99 scaffold1821 SAMTools SNP 200581 200581 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C231:41 scaffold1821 SAMTools SNP 200590 200590 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold1821 SAMTools SNP 206925 206925 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1821 SAMTools SNP 207519 207519 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1821 SAMTools SNP 207557 207557 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C228:63 scaffold1821 SAMTools SNP 209524 209524 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1821 SAMTools SNP 211695 211695 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C128:41 scaffold1821 SAMTools SNP 212199 212199 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.61%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1821 SAMTools SNP 212301 212301 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C174:99 scaffold1821 SAMTools SNP 213525 213525 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1821 SAMTools SNP 213558 213558 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1821 SAMTools SNP 214976 214976 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1821 SAMTools SNP 215331 215331 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D35%3BFQ%3D-47%3BPV4%3D1%2C0.5%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C20%2C0:37 scaffold1821 SAMTools SNP 217864 217864 6.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D13%3BFQ%3D-32%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C5%2C0:5 scaffold1821 SAMTools SNP 218522 218522 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.41%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1821 SAMTools SNP 224344 224344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1821 SAMTools SNP 230676 230676 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 231278 231278 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1821 SAMTools SNP 231595 231595 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C25%2C27%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1821 SAMTools SNP 234564 234564 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1821 SAMTools SNP 236295 236295 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C67%2C66%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 236310 236310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C56%2C74%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.44%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1821 SAMTools SNP 236364 236364 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0417%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C21:24 scaffold1821 SAMTools SNP 236391 236391 58.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold1821 SAMTools SNP 236472 236472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 240923 240923 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 240959 240959 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1821 SAMTools SNP 241233 241233 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C6.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C208:99 scaffold1821 SAMTools SNP 241327 241327 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.41%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1821 SAMTools SNP 243919 243919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 246280 246280 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1821 SAMTools SNP 246295 246295 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0093%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1821 SAMTools SNP 277635 277635 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1821 SAMTools SNP 277698 277698 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C136%2C33%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D2.3e-12%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1821 SAMTools SNP 278832 278832 87 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C40%2C10%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.23%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1821 SAMTools SNP 278844 278844 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1821 SAMTools SNP 280939 280939 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 280950 280950 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1821 SAMTools SNP 280952 280952 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.061%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1821 SAMTools SNP 280969 280969 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1821 SAMTools SNP 285974 285974 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1821 SAMTools SNP 286268 286268 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1821 SAMTools SNP 287041 287041 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1822 SAMTools SNP 54250 54250 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 66269 66269 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 66411 66411 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 70168 70168 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1822 SAMTools SNP 70210 70210 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1822 SAMTools SNP 71765 71765 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1822 SAMTools SNP 71822 71822 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1822 SAMTools SNP 71828 71828 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1822 SAMTools SNP 73547 73547 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1822 SAMTools SNP 74049 74049 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1822 SAMTools SNP 74053 74053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C14%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.011%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1822 SAMTools SNP 74277 74277 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1822 SAMTools SNP 74278 74278 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 74568 74568 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1822 SAMTools SNP 74582 74582 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1822 SAMTools SNP 74586 74586 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1822 SAMTools SNP 74664 74664 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.29%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1822 SAMTools SNP 75055 75055 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1822 SAMTools SNP 75059 75059 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1822 SAMTools SNP 75669 75669 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1822 SAMTools SNP 75681 75681 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1822 SAMTools SNP 75981 75981 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1822 SAMTools SNP 76098 76098 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1822 SAMTools SNP 77191 77191 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 88511 88511 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1822 SAMTools SNP 88627 88627 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1822 SAMTools SNP 89115 89115 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C6%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1822 SAMTools SNP 89682 89682 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 89859 89859 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4.6e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C154:51 scaffold1822 SAMTools SNP 94270 94270 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold1822 SAMTools SNP 95528 95528 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold1822 SAMTools SNP 95751 95751 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C8.4e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C207:99 scaffold1822 SAMTools SNP 95922 95922 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C2.7e-07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 96178 96178 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.28%2C1.3e-11%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C232:73 scaffold1822 SAMTools SNP 96243 96243 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1822 SAMTools SNP 97113 97113 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.039%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1822 SAMTools SNP 97227 97227 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C8%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.61%2C5.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1822 SAMTools SNP 97290 97290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 99847 99847 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 110668 110668 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.23%2C0.097%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1822 SAMTools SNP 118557 118557 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1822 SAMTools SNP 128080 128080 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1499%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C256%2C1216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 128110 128110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1523%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C11%2C28%2C150%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.085%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold1822 SAMTools SNP 128174 128174 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D821%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D607%2C5%2C188%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.6%2C1%2C1%2C2.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1822 SAMTools SNP 128179 128179 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D623%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C69%2C0:99 scaffold1822 SAMTools SNP 129274 129274 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D890%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C443%2C334%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-120%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 129280 129280 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D971%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D523%2C51%2C69%2C323%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-127%2C1%2C0.11%2C3.1e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 129312 129312 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D681%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C122%2C516%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-99%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 129538 129538 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D646%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1822 SAMTools SNP 129562 129562 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D636%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C0.009%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold1822 SAMTools SNP 129658 129658 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C68%2C26%2C10%3BMQ%3D50%3BFQ%3D61%3BPV4%3D2.5e-12%2C8e-84%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1822 SAMTools SNP 129748 129748 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1504%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1461%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 130225 130225 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5592%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C52%2C24%3BMQ%3D50%3BFQ%3D-222%3BPV4%3D0.32%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C195%2C0:99 scaffold1822 SAMTools SNP 130360 130360 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold1822 SAMTools SNP 130460 130460 77 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D2318%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C45%2C0%2C106%2C30%2C103:87 scaffold1822 SAMTools SNP 130936 130936 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 131356 131356 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D979%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C63%2C0:99 scaffold1822 SAMTools SNP 132214 132214 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C255%2C0:99 scaffold1822 SAMTools SNP 132709 132709 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1014%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C985%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 132802 132802 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1002%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold1822 SAMTools SNP 132886 132886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D903%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C690%2C19%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.00083%2C0.012%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 132905 132905 42.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2364%3BVDB%3D0.0093%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.0011%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C7:10 scaffold1822 SAMTools SNP 133106 133106 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2356%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1152%2C219%2C751%2C19%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1.1e-25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1822 SAMTools SNP 133163 133163 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3898%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1183%2C1248%2C219%2C1202%3BMQ%3D50%3BFQ%3D158%3BPV4%3D3.9e-102%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1822 SAMTools SNP 133413 133413 219 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2300%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C29%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C132%2C0%2C246%2C110%2C243:99 scaffold1822 SAMTools SNP 133581 133581 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D883%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1822 SAMTools SNP 134523 134523 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3123%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.0056%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C3%2C0:6 scaffold1822 SAMTools SNP 134834 134834 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C111%2C0:99 scaffold1822 SAMTools SNP 134932 134932 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold1822 SAMTools SNP 135089 135089 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C13%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D5e-08%2C7.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C232:52 scaffold1822 SAMTools SNP 135294 135294 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C51%2C0:99 scaffold1822 SAMTools SNP 135354 135354 6.19 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C84%2C0%3BMQ%3D50%3BFQ%3D-239%3BPV4%3D0.012%2C3.3e-33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C212%2C0:48 scaffold1822 SAMTools SNP 135677 135677 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold1822 SAMTools SNP 135896 135896 88.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2404%3BVDB%3D0.0073%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.43%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C8:11 scaffold1822 SAMTools SNP 136200 136200 164 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D7695%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C57%2C0%2C191%2C39%2C188:99 scaffold1822 SAMTools SNP 136327 136327 121 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D2761%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C19%2C0%2C120%2C5%2C140:35 scaffold1822 SAMTools SNP 136598 136598 122 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3306%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C205%2C0%2C156%2C187%2C153:99 scaffold1822 SAMTools SNP 136643 136643 36.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1822 SAMTools SNP 136686 136686 25.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3288%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold1822 SAMTools SNP 137151 137151 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1822 SAMTools SNP 137293 137293 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1452%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D504%2C234%2C403%2C280%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00032%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1822 SAMTools SNP 137687 137687 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2099%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C806%2C45%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.3e-61%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C255%2C0:99 scaffold1822 SAMTools SNP 137712 137712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2985%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1195%2C304%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 137849 137849 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2946%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C23%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1.1e-06%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C50:53 scaffold1822 SAMTools SNP 137901 137901 39.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1505%3BVDB%3D0.0009%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C11:14 scaffold1822 SAMTools SNP 137976 137976 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C35%2C33%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.00038%2C1.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C94:97 scaffold1822 SAMTools SNP 138581 138581 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1613%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C651%2C99%2C780%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.00015%2C0%2C0.19%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1822 SAMTools SNP 141549 141549 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C25%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.2e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C228:44 scaffold1822 SAMTools SNP 142767 142767 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1822 SAMTools SNP 143323 143323 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.28%2C0.052%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1822 SAMTools SNP 143328 143328 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.059%2C0.0099%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1822 SAMTools SNP 143347 143347 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1822 SAMTools SNP 143680 143680 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1822 SAMTools SNP 143713 143713 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold1822 SAMTools SNP 143992 143992 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C54%2C0:99 scaffold1822 SAMTools SNP 145732 145732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1822 SAMTools SNP 146905 146905 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.00093%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C230:97 scaffold1822 SAMTools SNP 146917 146917 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1822 SAMTools SNP 146926 146926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold1822 SAMTools SNP 146929 146929 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.6%2C0.0015%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1822 SAMTools SNP 146941 146941 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C0.0065%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1822 SAMTools SNP 148522 148522 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold1822 SAMTools SNP 148528 148528 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1822 SAMTools SNP 148536 148536 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold1822 SAMTools SNP 148556 148556 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1822 SAMTools SNP 149423 149423 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 158127 158127 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.033%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold1822 SAMTools SNP 158826 158826 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.33%2C0.09%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C138:48 scaffold1822 SAMTools SNP 158845 158845 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 159937 159937 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1822 SAMTools SNP 160028 160028 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1822 SAMTools SNP 161412 161412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1822 SAMTools SNP 161581 161581 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1822 SAMTools SNP 162386 162386 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0048%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.27%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C175:99 scaffold1822 SAMTools SNP 162395 162395 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.036%2C0.083%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C177:49 scaffold1822 SAMTools SNP 162541 162541 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C126:99 scaffold1822 SAMTools SNP 162971 162971 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C52:55 scaffold1822 SAMTools SNP 163522 163522 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.46%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1822 SAMTools SNP 163578 163578 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1822 SAMTools SNP 164782 164782 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold1822 SAMTools SNP 164981 164981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1822 SAMTools SNP 165000 165000 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1822 SAMTools SNP 173515 173515 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1822 SAMTools SNP 188372 188372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C12%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.23%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C76:79 scaffold1822 SAMTools SNP 188423 188423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1822 SAMTools SNP 188975 188975 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 188994 188994 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 189290 189290 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1822 SAMTools SNP 189326 189326 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C54%2C0:99 scaffold1822 SAMTools SNP 189362 189362 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1822 SAMTools SNP 189395 189395 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1822 SAMTools SNP 190055 190055 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D43%2C31%2C12%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0033%2C1%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C210:30 scaffold1822 SAMTools SNP 190057 190057 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1822 SAMTools SNP 190150 190150 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C34%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1822 SAMTools SNP 190463 190463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 190955 190955 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C10%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.07%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 191078 191078 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C52%2C1%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1822 SAMTools SNP 191371 191371 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.62%2C0.16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1822 SAMTools SNP 191545 191545 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1822 SAMTools SNP 192199 192199 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1822 SAMTools SNP 192208 192208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1822 SAMTools SNP 192763 192763 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C42%2C10%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1822 SAMTools SNP 192778 192778 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C42%2C10%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0073%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1822 SAMTools SNP 192808 192808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1822 SAMTools SNP 192840 192840 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1822 SAMTools SNP 193335 193335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1822 SAMTools SNP 193374 193374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1822 SAMTools SNP 193407 193407 39.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold1822 SAMTools SNP 193500 193500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C13%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1822 SAMTools SNP 194057 194057 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.66%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1822 SAMTools SNP 194518 194518 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1822 SAMTools SNP 194545 194545 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1822 SAMTools SNP 195548 195548 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 195751 195751 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1822 SAMTools SNP 195771 195771 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1822 SAMTools SNP 196170 196170 92.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1822 SAMTools SNP 196802 196802 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1822 SAMTools SNP 197098 197098 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1822 SAMTools SNP 197922 197922 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1822 SAMTools SNP 198520 198520 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C15%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1822 SAMTools SNP 199141 199141 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C22%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C19%2C0:35 scaffold1822 SAMTools SNP 199148 199148 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1822 SAMTools SNP 199171 199171 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1822 SAMTools SNP 199416 199416 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1822 SAMTools SNP 199458 199458 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold1822 SAMTools SNP 199474 199474 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0048%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1822 SAMTools SNP 199479 199479 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0023%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1822 SAMTools SNP 200079 200079 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C8%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1822 SAMTools SNP 200978 200978 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1822 SAMTools SNP 206384 206384 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1822 SAMTools SNP 206450 206450 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1822 SAMTools SNP 206668 206668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1822 SAMTools SNP 207115 207115 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C23%2C8%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.00051%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1822 SAMTools SNP 207528 207528 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C69%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1822 SAMTools SNP 207558 207558 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C60%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1822 SAMTools SNP 207585 207585 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1822 SAMTools SNP 208047 208047 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1822 SAMTools SNP 209589 209589 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1822 SAMTools SNP 209604 209604 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1822 SAMTools SNP 210617 210617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1822 SAMTools SNP 210659 210659 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D7.5e-05%2C0.24%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1822 SAMTools SNP 210665 210665 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1822 SAMTools SNP 211247 211247 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0071%2C2e-05%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1822 SAMTools SNP 212955 212955 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1822 SAMTools SNP 212959 212959 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1822 SAMTools SNP 215766 215766 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C91%2C11%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0055%2C0.02%2C1%2C9.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1822 SAMTools SNP 215783 215783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C102%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 215844 215844 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C177%2C71%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 229182 229182 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C21%2C28%2C16%3BMQ%3D25%3BFQ%3D40%3BPV4%3D0.31%2C0.49%2C0.00099%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C202:70 scaffold1822 SAMTools SNP 234002 234002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C49%2C35%2C37%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.42%2C1%2C0.48%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 243520 243520 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1822 SAMTools SNP 243538 243538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1822 SAMTools SNP 251226 251226 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.17%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C158:65 scaffold1822 SAMTools SNP 251516 251516 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.3e-28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1822 SAMTools SNP 251525 251525 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C3.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C234:81 scaffold1822 SAMTools SNP 252248 252248 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C138:28 scaffold1822 SAMTools SNP 292412 292412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C65%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 292439 292439 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C99%2C1%2C20%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1822 SAMTools SNP 292568 292568 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C0.012%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1822 SAMTools SNP 293511 293511 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1822 SAMTools SNP 297385 297385 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.62%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1822 SAMTools SNP 298961 298961 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1822 SAMTools SNP 299052 299052 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.58%2C0.15%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C160:99 scaffold1822 SAMTools SNP 299416 299416 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1822 SAMTools SNP 299467 299467 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.57%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1822 SAMTools SNP 299883 299883 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C2%2C19%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1822 SAMTools SNP 300327 300327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1822 SAMTools SNP 300393 300393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C19%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1822 SAMTools SNP 300429 300429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold1822 SAMTools SNP 301613 301613 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C59%2C76%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D5.2e-11%2C3.8e-20%2C1%2C2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1822 SAMTools SNP 301626 301626 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C72%2C8%2C9%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.6%2C0.16%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1822 SAMTools SNP 302571 302571 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C47%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 303108 303108 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1822 SAMTools SNP 303667 303667 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C28%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D5.9e-05%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1822 SAMTools SNP 304258 304258 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 304624 304624 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1822 SAMTools SNP 305169 305169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1822 SAMTools SNP 306707 306707 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C140:74 scaffold1823 SAMTools SNP 836 836 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1823 SAMTools SNP 7359 7359 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C96%2C0:99 scaffold1823 SAMTools SNP 8179 8179 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C254:37 scaffold1823 SAMTools SNP 9320 9320 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold1823 SAMTools SNP 9376 9376 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1823 SAMTools SNP 9765 9765 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.56%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C246:99 scaffold1823 SAMTools SNP 9917 9917 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1823 SAMTools SNP 25827 25827 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold1823 SAMTools SNP 26283 26283 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1823 SAMTools SNP 26525 26525 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1823 SAMTools SNP 55094 55094 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1823 SAMTools SNP 58586 58586 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1823 SAMTools SNP 64139 64139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1823 SAMTools SNP 98869 98869 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1823 SAMTools SNP 98981 98981 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1823 SAMTools SNP 99047 99047 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1824 SAMTools SNP 1056 1056 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1824 SAMTools SNP 1067 1067 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1824 SAMTools SNP 1139 1139 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1824 SAMTools SNP 1206 1206 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1824 SAMTools SNP 36051 36051 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1824 SAMTools SNP 37656 37656 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1824 SAMTools SNP 38244 38244 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.22%2C0.021%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1824 SAMTools SNP 38286 38286 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C21%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1824 SAMTools SNP 39025 39025 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C46%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.44%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold1824 SAMTools SNP 39367 39367 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C243%2C177:99 scaffold1824 SAMTools SNP 39394 39394 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C6%2C47%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold1824 SAMTools SNP 41193 41193 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1824 SAMTools SNP 41196 41196 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1824 SAMTools SNP 41680 41680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C13%2C99%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1824 SAMTools SNP 41734 41734 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C75%2C59%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 69 69 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C69:72 scaffold1825 SAMTools SNP 375 375 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C2.9e-23%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 1769 1769 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1825 SAMTools SNP 1818 1818 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1825 SAMTools SNP 2325 2325 42.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1825 SAMTools SNP 6049 6049 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C18%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C1.6e-18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C58%2C0:99 scaffold1825 SAMTools SNP 6538 6538 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C0%2C93%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D1.4e-06%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C83%2C0:99 scaffold1825 SAMTools SNP 6554 6554 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C0%2C69%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D4.3e-06%2C1%2C1%2C5e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C6%2C0:10 scaffold1825 SAMTools SNP 26496 26496 39.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1825 SAMTools SNP 26504 26504 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1825 SAMTools SNP 32681 32681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 52269 52269 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1825 SAMTools SNP 55065 55065 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1825 SAMTools SNP 62130 62130 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1825 SAMTools SNP 71407 71407 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1825 SAMTools SNP 73233 73233 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C45%2C0:87 scaffold1825 SAMTools SNP 73301 73301 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C171:74 scaffold1825 SAMTools SNP 73313 73313 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1825 SAMTools SNP 73931 73931 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1825 SAMTools SNP 74619 74619 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1825 SAMTools SNP 74673 74673 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1825 SAMTools SNP 74720 74720 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 75483 75483 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1825 SAMTools SNP 75554 75554 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C18%2C0:33 scaffold1825 SAMTools SNP 75730 75730 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1825 SAMTools SNP 75847 75847 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 76033 76033 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1825 SAMTools SNP 76078 76078 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 76403 76403 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 76843 76843 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold1825 SAMTools SNP 76983 76983 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1825 SAMTools SNP 78386 78386 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1825 SAMTools SNP 78560 78560 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1825 SAMTools SNP 78696 78696 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1825 SAMTools SNP 78875 78875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1825 SAMTools SNP 78939 78939 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1825 SAMTools SNP 78943 78943 49.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold1825 SAMTools SNP 78972 78972 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1825 SAMTools SNP 79397 79397 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1825 SAMTools SNP 84968 84968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 85425 85425 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1825 SAMTools SNP 85438 85438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1825 SAMTools SNP 85818 85818 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1825 SAMTools SNP 85842 85842 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C3%2C0:6 scaffold1825 SAMTools SNP 86348 86348 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1825 SAMTools SNP 86414 86414 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1825 SAMTools SNP 88343 88343 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 88365 88365 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1825 SAMTools SNP 88659 88659 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 90882 90882 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold1825 SAMTools SNP 90890 90890 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0011%2C0.0028%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1825 SAMTools SNP 92602 92602 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 92621 92621 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1825 SAMTools SNP 92623 92623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1825 SAMTools SNP 92638 92638 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 93364 93364 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1825 SAMTools SNP 93653 93653 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold1825 SAMTools SNP 93683 93683 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.04%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C129:99 scaffold1825 SAMTools SNP 93758 93758 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1825 SAMTools SNP 93788 93788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1825 SAMTools SNP 96479 96479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C71%3BMQ%3D49%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1825 SAMTools SNP 96548 96548 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C3%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.61%2C6.6e-12%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 96992 96992 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C33%2C0:63 scaffold1825 SAMTools SNP 97475 97475 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1825 SAMTools SNP 97499 97499 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1825 SAMTools SNP 97892 97892 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 97907 97907 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1825 SAMTools SNP 97937 97937 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1825 SAMTools SNP 98245 98245 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1825 SAMTools SNP 98296 98296 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 98512 98512 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C12%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 98611 98611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C25%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 99911 99911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C70%2C9%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 99944 99944 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C66%2C5%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.024%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 99962 99962 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C22%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1825 SAMTools SNP 100400 100400 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1825 SAMTools SNP 100632 100632 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1825 SAMTools SNP 100662 100662 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C216:99 scaffold1825 SAMTools SNP 101252 101252 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C149:99 scaffold1825 SAMTools SNP 101379 101379 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1825 SAMTools SNP 101401 101401 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1825 SAMTools SNP 102025 102025 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold1825 SAMTools SNP 102034 102034 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1825 SAMTools SNP 102040 102040 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 102049 102049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1825 SAMTools SNP 102415 102415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C5%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1825 SAMTools SNP 102487 102487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1825 SAMTools SNP 102619 102619 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C114%2C0:99 scaffold1825 SAMTools SNP 102658 102658 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C17%2C32%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.27%2C2.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1825 SAMTools SNP 102709 102709 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C47%2C0%2C40%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.035%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1825 SAMTools SNP 102829 102829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 104284 104284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold1825 SAMTools SNP 106304 106304 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C5%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D2.8e-06%2C0.0034%2C1%2C5.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C204:41 scaffold1825 SAMTools SNP 106340 106340 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C16%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C242:99 scaffold1825 SAMTools SNP 112323 112323 20.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1825 SAMTools SNP 112381 112381 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1825 SAMTools SNP 112383 112383 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1825 SAMTools SNP 113507 113507 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1825 SAMTools SNP 113530 113530 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1825 SAMTools SNP 113944 113944 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1825 SAMTools SNP 113975 113975 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1825 SAMTools SNP 114001 114001 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1825 SAMTools SNP 114034 114034 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1825 SAMTools SNP 149639 149639 84.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold1825 SAMTools SNP 149657 149657 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1825 SAMTools SNP 149695 149695 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1825 SAMTools SNP 150652 150652 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 150664 150664 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 152594 152594 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1825 SAMTools SNP 154611 154611 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 154889 154889 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C255%2C0:99 scaffold1825 SAMTools SNP 155258 155258 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C342%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1825 SAMTools SNP 155586 155586 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D651%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C361%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1825 SAMTools SNP 162309 162309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C138%2C60%2C101%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 162472 162472 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C119%2C28%2C142%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1825 SAMTools SNP 162789 162789 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1365%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.00016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C6%2C0:10 scaffold1825 SAMTools SNP 169040 169040 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 169361 169361 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 169824 169824 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 171216 171216 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1825 SAMTools SNP 171446 171446 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1825 SAMTools SNP 171459 171459 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1825 SAMTools SNP 211293 211293 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1825 SAMTools SNP 211367 211367 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1825 SAMTools SNP 219348 219348 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1826 SAMTools SNP 34673 34673 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1826 SAMTools SNP 34755 34755 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1826 SAMTools SNP 51018 51018 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold1826 SAMTools SNP 52451 52451 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1826 SAMTools SNP 52502 52502 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1826 SAMTools SNP 52831 52831 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1826 SAMTools SNP 52889 52889 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1826 SAMTools SNP 53400 53400 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1826 SAMTools SNP 53402 53402 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1826 SAMTools SNP 56823 56823 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1826 SAMTools SNP 56867 56867 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1826 SAMTools SNP 57644 57644 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1826 SAMTools SNP 57817 57817 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1826 SAMTools SNP 94750 94750 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1826 SAMTools SNP 95009 95009 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1826 SAMTools SNP 95755 95755 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1826 SAMTools SNP 95784 95784 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1826 SAMTools SNP 96581 96581 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1826 SAMTools SNP 97309 97309 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1826 SAMTools SNP 102491 102491 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1826 SAMTools SNP 123613 123613 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1826 SAMTools SNP 123691 123691 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1826 SAMTools SNP 123695 123695 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1826 SAMTools SNP 123817 123817 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold1826 SAMTools SNP 128709 128709 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1826 SAMTools SNP 128722 128722 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1826 SAMTools SNP 131930 131930 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1826 SAMTools SNP 132540 132540 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C94:49 scaffold1826 SAMTools SNP 132548 132548 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1826 SAMTools SNP 132577 132577 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1826 SAMTools SNP 132603 132603 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold1826 SAMTools SNP 139013 139013 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1826 SAMTools SNP 145606 145606 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1827 SAMTools SNP 68206 68206 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D37%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C84%2C0:99 scaffold1827 SAMTools SNP 68255 68255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C2%3BMQ%3D42%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1827 SAMTools SNP 69954 69954 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1827 SAMTools SNP 70655 70655 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D48%3BFQ%3D75%3BPV4%3D1%2C1%2C0.18%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1827 SAMTools SNP 71489 71489 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C13%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C243:69 scaffold1827 SAMTools SNP 71513 71513 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C238:51 scaffold1827 SAMTools SNP 76478 76478 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1827 SAMTools SNP 76562 76562 55.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold1827 SAMTools SNP 76707 76707 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.32%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C156:99 scaffold1827 SAMTools SNP 76722 76722 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1827 SAMTools SNP 76774 76774 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1827 SAMTools SNP 76776 76776 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1827 SAMTools SNP 81120 81120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 83698 83698 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1827 SAMTools SNP 84095 84095 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1827 SAMTools SNP 84174 84174 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C129:99 scaffold1827 SAMTools SNP 89523 89523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C8%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 89686 89686 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 105792 105792 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1827 SAMTools SNP 105843 105843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 106444 106444 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 106459 106459 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.039%2C0.078%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1827 SAMTools SNP 106559 106559 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1827 SAMTools SNP 106579 106579 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 107583 107583 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1827 SAMTools SNP 108226 108226 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1827 SAMTools SNP 108560 108560 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1827 SAMTools SNP 108935 108935 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1827 SAMTools SNP 108977 108977 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1827 SAMTools SNP 109350 109350 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold1827 SAMTools SNP 109383 109383 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1827 SAMTools SNP 109696 109696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1827 SAMTools SNP 109918 109918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1827 SAMTools SNP 110015 110015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1827 SAMTools SNP 110674 110674 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1827 SAMTools SNP 111006 111006 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1827 SAMTools SNP 112080 112080 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1827 SAMTools SNP 112089 112089 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C3%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.65%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1827 SAMTools SNP 112625 112625 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.053%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1827 SAMTools SNP 117101 117101 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 117472 117472 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 119238 119238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1827 SAMTools SNP 119251 119251 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 119290 119290 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1827 SAMTools SNP 119614 119614 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1827 SAMTools SNP 119851 119851 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C3.1e-17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1827 SAMTools SNP 129072 129072 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1827 SAMTools SNP 129676 129676 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1827 SAMTools SNP 137052 137052 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1827 SAMTools SNP 137694 137694 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C45%2C0:86 scaffold1827 SAMTools SNP 137966 137966 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1827 SAMTools SNP 137968 137968 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1827 SAMTools SNP 138418 138418 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C117:36 scaffold1827 SAMTools SNP 138433 138433 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold1827 SAMTools SNP 140654 140654 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1827 SAMTools SNP 141729 141729 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold1827 SAMTools SNP 141800 141800 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1827 SAMTools SNP 141846 141846 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C112:99 scaffold1827 SAMTools SNP 143006 143006 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold1827 SAMTools SNP 143050 143050 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.58%2C0.26%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1827 SAMTools SNP 143074 143074 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1827 SAMTools SNP 151636 151636 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1827 SAMTools SNP 152217 152217 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0022%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.055%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C75:28 scaffold1827 SAMTools SNP 165142 165142 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 165700 165700 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 197051 197051 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 197328 197328 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D1%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C114%2C0:99 scaffold1827 SAMTools SNP 197372 197372 172 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C117%2C0%2C197%2C94%2C194:99 scaffold1827 SAMTools SNP 198761 198761 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1827 SAMTools SNP 199239 199239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1827 SAMTools SNP 199241 199241 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.037%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C212:99 scaffold1827 SAMTools SNP 199257 199257 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C16%2C0%3BMQ%3D49%3BFQ%3D161%3BPV4%3D0.57%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1827 SAMTools SNP 199266 199266 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C12%3BMQ%3D47%3BFQ%3D46%3BPV4%3D0.00034%2C2.9e-09%2C0.32%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C252:76 scaffold1827 SAMTools SNP 199311 199311 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C17%3BMQ%3D49%3BFQ%3D156%3BPV4%3D1%2C5.2e-05%2C0.41%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C243:99 scaffold1827 SAMTools SNP 199326 199326 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C15%3BMQ%3D49%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C237:99 scaffold1827 SAMTools SNP 202121 202121 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.2%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold1827 SAMTools SNP 203454 203454 55.8 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C11%2C5%2C86%2C0%2C83:10 scaffold1827 SAMTools SNP 203492 203492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1827 SAMTools SNP 205650 205650 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1827 SAMTools SNP 205672 205672 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1827 SAMTools SNP 205920 205920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1827 SAMTools SNP 206286 206286 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C24%2C0:45 scaffold1827 SAMTools SNP 206328 206328 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold1827 SAMTools SNP 207235 207235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1827 SAMTools SNP 208095 208095 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1827 SAMTools SNP 213062 213062 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D-4.81%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C24:28 scaffold1827 SAMTools SNP 213082 213082 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1827 SAMTools SNP 213564 213564 5.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.8293%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D20%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C1:6 scaffold1827 SAMTools SNP 213589 213589 21.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D29%3BFQ%3D-28%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C1%2C0:4 scaffold1827 SAMTools SNP 270033 270033 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1827 SAMTools SNP 277977 277977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1827 SAMTools SNP 279329 279329 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C13%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00013%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1827 SAMTools SNP 279530 279530 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1827 SAMTools SNP 279897 279897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C2%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 280350 280350 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C120%2C0:99 scaffold1827 SAMTools SNP 280356 280356 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1827 SAMTools SNP 280428 280428 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1827 SAMTools SNP 282854 282854 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C106:28 scaffold1827 SAMTools SNP 283333 283333 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 284911 284911 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1827 SAMTools SNP 285475 285475 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1827 SAMTools SNP 286038 286038 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C38:41 scaffold1827 SAMTools SNP 287214 287214 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1827 SAMTools SNP 287224 287224 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1827 SAMTools SNP 287246 287246 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1827 SAMTools SNP 288289 288289 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C30%2C0:57 scaffold1827 SAMTools SNP 290436 290436 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C33%2C0:63 scaffold1827 SAMTools SNP 290509 290509 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.001%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C203:30 scaffold1827 SAMTools SNP 290552 290552 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.17%2C0.26%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1827 SAMTools SNP 291145 291145 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1827 SAMTools SNP 291172 291172 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1827 SAMTools SNP 291556 291556 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1827 SAMTools SNP 292260 292260 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1827 SAMTools SNP 292314 292314 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.16%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C127:53 scaffold1827 SAMTools SNP 292340 292340 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C113:30 scaffold1827 SAMTools SNP 292513 292513 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C74:39 scaffold1827 SAMTools SNP 292534 292534 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C88:61 scaffold1827 SAMTools SNP 292547 292547 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1827 SAMTools SNP 292678 292678 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1827 SAMTools SNP 292688 292688 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1827 SAMTools SNP 293062 293062 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1827 SAMTools SNP 293361 293361 90 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C189:99 scaffold1827 SAMTools SNP 295441 295441 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1827 SAMTools SNP 295849 295849 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1827 SAMTools SNP 296542 296542 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 297631 297631 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 297646 297646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 300756 300756 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1827 SAMTools SNP 303102 303102 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 303210 303210 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1827 SAMTools SNP 303965 303965 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1827 SAMTools SNP 304809 304809 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 305447 305447 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1827 SAMTools SNP 306742 306742 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1827 SAMTools SNP 306774 306774 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0136%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00025%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1827 SAMTools SNP 309965 309965 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.3e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1827 SAMTools SNP 310224 310224 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1827 SAMTools SNP 310230 310230 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C32:35 scaffold1827 SAMTools SNP 310572 310572 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1827 SAMTools SNP 310575 310575 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1827 SAMTools SNP 313388 313388 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 313391 313391 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 313472 313472 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold1827 SAMTools SNP 314854 314854 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1827 SAMTools SNP 314883 314883 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold1827 SAMTools SNP 315199 315199 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C9%2C1%3BMQ%3D49%3BFQ%3D100%3BPV4%3D0.27%2C1%2C0.19%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1827 SAMTools SNP 318055 318055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 318703 318703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.082%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1827 SAMTools SNP 321230 321230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1827 SAMTools SNP 321296 321296 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1827 SAMTools SNP 321490 321490 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C0.022%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1827 SAMTools SNP 323274 323274 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1827 SAMTools SNP 323365 323365 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1827 SAMTools SNP 323568 323568 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1827 SAMTools SNP 323589 323589 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1827 SAMTools SNP 324013 324013 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.51%2C0.0006%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1827 SAMTools SNP 324117 324117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.22%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 324120 324120 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 324141 324141 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 325206 325206 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C24%2C0:45 scaffold1827 SAMTools SNP 325423 325423 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 325621 325621 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C2%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1827 SAMTools SNP 325641 325641 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1827 SAMTools SNP 328338 328338 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1827 SAMTools SNP 328433 328433 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C23%2C9%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.13%2C2.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1827 SAMTools SNP 328833 328833 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.093%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1827 SAMTools SNP 329057 329057 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1827 SAMTools SNP 329461 329461 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1827 SAMTools SNP 329791 329791 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.29%2C0.06%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C160:54 scaffold1827 SAMTools SNP 329796 329796 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.44%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C191:46 scaffold1827 SAMTools SNP 332728 332728 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1827 SAMTools SNP 332810 332810 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C11%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.23%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1827 SAMTools SNP 332957 332957 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 333023 333023 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.36%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1827 SAMTools SNP 333457 333457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1827 SAMTools SNP 338375 338375 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1827 SAMTools SNP 341456 341456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1827 SAMTools SNP 341477 341477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1827 SAMTools SNP 346751 346751 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1827 SAMTools SNP 350344 350344 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C229:99 scaffold1827 SAMTools SNP 351235 351235 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1827 SAMTools SNP 356425 356425 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1827 SAMTools SNP 361764 361764 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.2%2C4.8e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C251:99 scaffold1827 SAMTools SNP 368083 368083 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1827 SAMTools SNP 368509 368509 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1827 SAMTools SNP 368541 368541 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 197 197 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1828 SAMTools SNP 1013 1013 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1828 SAMTools SNP 2307 2307 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold1828 SAMTools SNP 39761 39761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 44704 44704 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1828 SAMTools SNP 60265 60265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.53%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1828 SAMTools SNP 60625 60625 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1828 SAMTools SNP 66641 66641 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1828 SAMTools SNP 66682 66682 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold1828 SAMTools SNP 73278 73278 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1828 SAMTools SNP 73427 73427 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1828 SAMTools SNP 73921 73921 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1828 SAMTools SNP 96709 96709 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.29%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1828 SAMTools SNP 110087 110087 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 110116 110116 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1828 SAMTools SNP 110552 110552 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1828 SAMTools SNP 110784 110784 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1828 SAMTools SNP 110806 110806 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 117255 117255 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1828 SAMTools SNP 117581 117581 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.17%2C0.0005%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1828 SAMTools SNP 118192 118192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1828 SAMTools SNP 118512 118512 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1828 SAMTools SNP 119016 119016 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1828 SAMTools SNP 119061 119061 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C9%2C0:16 scaffold1828 SAMTools SNP 120513 120513 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1828 SAMTools SNP 120522 120522 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 123622 123622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1828 SAMTools SNP 132936 132936 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1828 SAMTools SNP 133032 133032 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1828 SAMTools SNP 134566 134566 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold1828 SAMTools SNP 135072 135072 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1828 SAMTools SNP 137253 137253 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold1828 SAMTools SNP 138211 138211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1828 SAMTools SNP 142249 142249 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1828 SAMTools SNP 142250 142250 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1828 SAMTools SNP 142272 142272 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1829 SAMTools SNP 8 8 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 41 41 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 655 655 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 694 694 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 751 751 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold1829 SAMTools SNP 998 998 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1829 SAMTools SNP 1833 1833 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1829 SAMTools SNP 1843 1843 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1829 SAMTools SNP 2188 2188 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.34%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1829 SAMTools SNP 2218 2218 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1829 SAMTools SNP 2485 2485 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 2694 2694 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1829 SAMTools SNP 2709 2709 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1829 SAMTools SNP 3885 3885 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1829 SAMTools SNP 4500 4500 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1829 SAMTools SNP 5936 5936 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1829 SAMTools SNP 61698 61698 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C7%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.38%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1829 SAMTools SNP 66373 66373 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1829 SAMTools SNP 66390 66390 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1829 SAMTools SNP 66423 66423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1829 SAMTools SNP 67749 67749 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C1%2C11%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0043%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1829 SAMTools SNP 67848 67848 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold1829 SAMTools SNP 68673 68673 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold1829 SAMTools SNP 68754 68754 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1829 SAMTools SNP 69039 69039 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1829 SAMTools SNP 69057 69057 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1829 SAMTools SNP 69078 69078 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 69501 69501 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1829 SAMTools SNP 69958 69958 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.001%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1829 SAMTools SNP 69961 69961 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.001%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1829 SAMTools SNP 70096 70096 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold1829 SAMTools SNP 70132 70132 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.004%2C5.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C81:84 scaffold1829 SAMTools SNP 70198 70198 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1829 SAMTools SNP 70255 70255 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.3e-10%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C250:43 scaffold1829 SAMTools SNP 70294 70294 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C4.1e-13%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C160:99 scaffold1829 SAMTools SNP 70450 70450 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1829 SAMTools SNP 70549 70549 54.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1829 SAMTools SNP 70828 70828 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1829 SAMTools SNP 71242 71242 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1829 SAMTools SNP 71252 71252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1829 SAMTools SNP 71270 71270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1829 SAMTools SNP 71420 71420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C2.3e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1829 SAMTools SNP 71468 71468 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C11%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.018%2C3.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1829 SAMTools SNP 71504 71504 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C250:99 scaffold1829 SAMTools SNP 71588 71588 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C8%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00064%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1829 SAMTools SNP 71594 71594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1829 SAMTools SNP 72938 72938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1829 SAMTools SNP 73808 73808 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C27%2C0:51 scaffold1829 SAMTools SNP 73811 73811 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold1829 SAMTools SNP 73887 73887 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C17%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.12%2C4.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1829 SAMTools SNP 73907 73907 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C226:58 scaffold1829 SAMTools SNP 74466 74466 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1.1e-16%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1829 SAMTools SNP 74521 74521 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D2.6e-07%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C226:99 scaffold1829 SAMTools SNP 74522 74522 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C33%3BMQ%3D50%3BFQ%3D220%3BPV4%3D5.4e-10%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1829 SAMTools SNP 74632 74632 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1829 SAMTools SNP 76815 76815 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C24%2C12%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.34%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1829 SAMTools SNP 77314 77314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1829 SAMTools SNP 78156 78156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C65%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1829 SAMTools SNP 78212 78212 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C9%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C4.6e-07%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C214:77 scaffold1829 SAMTools SNP 78788 78788 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold1829 SAMTools SNP 80728 80728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1829 SAMTools SNP 80866 80866 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C48%2C0:89 scaffold1829 SAMTools SNP 84307 84307 12.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1829 SAMTools SNP 86580 86580 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1829 SAMTools SNP 87627 87627 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1829 SAMTools SNP 88094 88094 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1829 SAMTools SNP 88635 88635 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1829 SAMTools SNP 89292 89292 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1829 SAMTools SNP 89334 89334 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C18:21 scaffold1829 SAMTools SNP 89428 89428 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1829 SAMTools SNP 89433 89433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1829 SAMTools SNP 90179 90179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1829 SAMTools SNP 91262 91262 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1829 SAMTools SNP 91301 91301 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1829 SAMTools SNP 93379 93379 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1829 SAMTools SNP 96512 96512 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1829 SAMTools SNP 102241 102241 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1829 SAMTools SNP 103225 103225 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1829 SAMTools SNP 103272 103272 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C51%2C0:99 scaffold1829 SAMTools SNP 109000 109000 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.15%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold1829 SAMTools SNP 111443 111443 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C24%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C187%2C0:99 scaffold1829 SAMTools SNP 111970 111970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1829 SAMTools SNP 111973 111973 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C45%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D4.2e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1829 SAMTools SNP 112120 112120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C359%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1829 SAMTools SNP 113112 113112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C233%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1829 SAMTools SNP 114170 114170 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1829 SAMTools SNP 114171 114171 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1829 SAMTools SNP 114176 114176 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1829 SAMTools SNP 114206 114206 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1829 SAMTools SNP 114236 114236 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C42%2C0:81 scaffold1829 SAMTools SNP 114301 114301 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C193%2C0:99 scaffold1829 SAMTools SNP 114323 114323 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1829 SAMTools SNP 115667 115667 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1829 SAMTools SNP 115696 115696 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C6.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold1829 SAMTools SNP 115697 115697 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1829 SAMTools SNP 131813 131813 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 132509 132509 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 138553 138553 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1829 SAMTools SNP 138624 138624 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1829 SAMTools SNP 140171 140171 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold1829 SAMTools SNP 143067 143067 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C142%2C23%2C153%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.62%2C1.5e-242%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1829 SAMTools SNP 144506 144506 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C183%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1829 SAMTools SNP 144636 144636 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C36%2C1%2C28%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1e-11%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1829 SAMTools SNP 153400 153400 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1829 SAMTools SNP 153470 153470 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C23:26 scaffold1832 SAMTools SNP 115 115 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 452 452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1832 SAMTools SNP 1536 1536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 11996 11996 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1832 SAMTools SNP 12000 12000 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1832 SAMTools SNP 12012 12012 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C129:55 scaffold1832 SAMTools SNP 12915 12915 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C145:99 scaffold1832 SAMTools SNP 18430 18430 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 18451 18451 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 26635 26635 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1832 SAMTools SNP 26686 26686 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C28%2C0:53 scaffold1832 SAMTools SNP 28342 28342 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1832 SAMTools SNP 29257 29257 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C12:15 scaffold1832 SAMTools SNP 29261 29261 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.059%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1832 SAMTools SNP 30915 30915 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C27%2C0:47 scaffold1832 SAMTools SNP 31453 31453 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1832 SAMTools SNP 31996 31996 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1832 SAMTools SNP 42835 42835 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1832 SAMTools SNP 42901 42901 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 117104 117104 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 141871 141871 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 142509 142509 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold1832 SAMTools SNP 142573 142573 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold1832 SAMTools SNP 202742 202742 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1832 SAMTools SNP 243817 243817 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1832 SAMTools SNP 249820 249820 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 280445 280445 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1832 SAMTools SNP 280469 280469 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1832 SAMTools SNP 281571 281571 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold1832 SAMTools SNP 284583 284583 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 285404 285404 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 286142 286142 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 287536 287536 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1832 SAMTools SNP 292915 292915 6.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5031%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-8.72%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C19:24 scaffold1832 SAMTools SNP 294064 294064 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1832 SAMTools SNP 294784 294784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1832 SAMTools SNP 298683 298683 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D71.8%3BPV4%3D1%2C0.47%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C112:99 scaffold1832 SAMTools SNP 299439 299439 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold1832 SAMTools SNP 299457 299457 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C145:99 scaffold1832 SAMTools SNP 299861 299861 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1832 SAMTools SNP 299902 299902 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1832 SAMTools SNP 307405 307405 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold1832 SAMTools SNP 313805 313805 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1832 SAMTools SNP 313887 313887 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1832 SAMTools SNP 316200 316200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1832 SAMTools SNP 316918 316918 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.12%2C0.00012%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1832 SAMTools SNP 317193 317193 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1832 SAMTools SNP 317211 317211 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C205:99 scaffold1832 SAMTools SNP 324982 324982 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1832 SAMTools SNP 325006 325006 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C247:99 scaffold1832 SAMTools SNP 325637 325637 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 326765 326765 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1832 SAMTools SNP 327626 327626 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1832 SAMTools SNP 332515 332515 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C127:40 scaffold1832 SAMTools SNP 332530 332530 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold1832 SAMTools SNP 332536 332536 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold1832 SAMTools SNP 332537 332537 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold1832 SAMTools SNP 333222 333222 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1832 SAMTools SNP 333248 333248 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1832 SAMTools SNP 333258 333258 116 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold1832 SAMTools SNP 333949 333949 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold1832 SAMTools SNP 334021 334021 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1832 SAMTools SNP 334255 334255 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1832 SAMTools SNP 335703 335703 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1832 SAMTools SNP 335834 335834 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1832 SAMTools SNP 336057 336057 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1832 SAMTools SNP 337909 337909 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1832 SAMTools SNP 338059 338059 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1832 SAMTools SNP 338130 338130 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1832 SAMTools SNP 338133 338133 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1832 SAMTools SNP 338324 338324 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1832 SAMTools SNP 338329 338329 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1832 SAMTools SNP 338387 338387 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C45%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold1832 SAMTools SNP 338666 338666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1832 SAMTools SNP 341341 341341 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1832 SAMTools SNP 341416 341416 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C108%2C0:99 scaffold1832 SAMTools SNP 343387 343387 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1832 SAMTools SNP 343405 343405 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1832 SAMTools SNP 343476 343476 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D38.9%3BPV4%3D0.17%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C66:69 scaffold1832 SAMTools SNP 343654 343654 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1832 SAMTools SNP 360839 360839 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1832 SAMTools SNP 362356 362356 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1832 SAMTools SNP 362371 362371 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1832 SAMTools SNP 362435 362435 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1832 SAMTools SNP 368178 368178 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold1832 SAMTools SNP 369156 369156 40.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold1832 SAMTools SNP 369275 369275 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold1832 SAMTools SNP 369450 369450 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold1832 SAMTools SNP 370204 370204 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 370220 370220 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 440174 440174 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C18%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.27%2C7.3e-31%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1832 SAMTools SNP 440291 440291 38.5 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C17%2C5%2C66%2C0%2C63:21 scaffold1832 SAMTools SNP 441250 441250 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1832 SAMTools SNP 441275 441275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1832 SAMTools SNP 441400 441400 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C24%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1832 SAMTools SNP 444594 444594 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C4%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.31%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1832 SAMTools SNP 444617 444617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1832 SAMTools SNP 444839 444839 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C129%2C0:99 scaffold1832 SAMTools SNP 445956 445956 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C23%2C42%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 445989 445989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C57%2C60%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 446938 446938 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C96%2C0%2C25%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.41%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C231:99 scaffold1832 SAMTools SNP 446942 446942 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C95%2C0%2C21%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C218:99 scaffold1832 SAMTools SNP 446972 446972 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1832 SAMTools SNP 448059 448059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1832 SAMTools SNP 448419 448419 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.37%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1832 SAMTools SNP 448799 448799 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.012%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1832 SAMTools SNP 449144 449144 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1832 SAMTools SNP 449195 449195 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1832 SAMTools SNP 450378 450378 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1832 SAMTools SNP 451279 451279 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1832 SAMTools SNP 452307 452307 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 452343 452343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 452897 452897 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 456591 456591 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C39%2C0:75 scaffold1832 SAMTools SNP 457036 457036 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1832 SAMTools SNP 457060 457060 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1832 SAMTools SNP 457063 457063 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1832 SAMTools SNP 457235 457235 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold1832 SAMTools SNP 457401 457401 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1832 SAMTools SNP 457414 457414 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1832 SAMTools SNP 457623 457623 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 457638 457638 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1832 SAMTools SNP 458384 458384 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold1832 SAMTools SNP 458873 458873 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1832 SAMTools SNP 458876 458876 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1832 SAMTools SNP 458909 458909 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 458929 458929 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 459111 459111 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold1832 SAMTools SNP 459606 459606 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1832 SAMTools SNP 460647 460647 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1832 SAMTools SNP 464849 464849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1832 SAMTools SNP 464903 464903 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1832 SAMTools SNP 465324 465324 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1832 SAMTools SNP 465935 465935 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 466017 466017 39.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1832 SAMTools SNP 466780 466780 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1832 SAMTools SNP 466801 466801 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1832 SAMTools SNP 467827 467827 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C42%2C0:81 scaffold1832 SAMTools SNP 472983 472983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C34%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1832 SAMTools SNP 473290 473290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1832 SAMTools SNP 473366 473366 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1832 SAMTools SNP 473378 473378 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold1832 SAMTools SNP 475150 475150 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1832 SAMTools SNP 475782 475782 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1832 SAMTools SNP 475806 475806 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold1832 SAMTools SNP 475817 475817 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold1832 SAMTools SNP 476390 476390 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1832 SAMTools SNP 476432 476432 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1832 SAMTools SNP 476443 476443 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1832 SAMTools SNP 476444 476444 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C134:33 scaffold1832 SAMTools SNP 476779 476779 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C113:99 scaffold1832 SAMTools SNP 476801 476801 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1832 SAMTools SNP 476810 476810 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.02%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1832 SAMTools SNP 476837 476837 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1832 SAMTools SNP 477303 477303 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold1832 SAMTools SNP 477652 477652 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 477669 477669 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 477742 477742 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 477763 477763 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1832 SAMTools SNP 478415 478415 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.5%2C0.26%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C202:99 scaffold1832 SAMTools SNP 478499 478499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C17%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1832 SAMTools SNP 478759 478759 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C5%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.25%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1832 SAMTools SNP 479241 479241 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C15%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1832 SAMTools SNP 479640 479640 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 479688 479688 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 479693 479693 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 480194 480194 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1832 SAMTools SNP 480206 480206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.044%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 480227 480227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1832 SAMTools SNP 480574 480574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C7%2C66%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 483097 483097 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C22%2C13%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.62%2C3.3e-52%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1832 SAMTools SNP 484012 484012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C19%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.024%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold1832 SAMTools SNP 484607 484607 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C17%2C9%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.012%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1832 SAMTools SNP 484660 484660 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1832 SAMTools SNP 484675 484675 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C57%2C0:99 scaffold1832 SAMTools SNP 485287 485287 34.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1832 SAMTools SNP 485372 485372 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C81%2C0:99 scaffold1832 SAMTools SNP 485512 485512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1832 SAMTools SNP 486795 486795 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1832 SAMTools SNP 487445 487445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1832 SAMTools SNP 488620 488620 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C10%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.017%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1832 SAMTools SNP 490037 490037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1832 SAMTools SNP 490051 490051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C80%3BMQ%3D50%3BFQ%3D-240%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C213%2C0:99 scaffold1832 SAMTools SNP 491060 491060 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1832 SAMTools SNP 494886 494886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 494901 494901 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 495405 495405 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.021%2C0.029%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1832 SAMTools SNP 495522 495522 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1832 SAMTools SNP 497340 497340 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1832 SAMTools SNP 497939 497939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C58%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1832 SAMTools SNP 498744 498744 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 498783 498783 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold1832 SAMTools SNP 498825 498825 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold1832 SAMTools SNP 500212 500212 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1832 SAMTools SNP 500271 500271 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1832 SAMTools SNP 500936 500936 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1832 SAMTools SNP 501200 501200 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1832 SAMTools SNP 502629 502629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1832 SAMTools SNP 502752 502752 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold1832 SAMTools SNP 502836 502836 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C9e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C129:46 scaffold1832 SAMTools SNP 507522 507522 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C19%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1832 SAMTools SNP 508322 508322 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1832 SAMTools SNP 508348 508348 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 508389 508389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C60%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1832 SAMTools SNP 509168 509168 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1832 SAMTools SNP 512114 512114 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C9%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1832 SAMTools SNP 520290 520290 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1832 SAMTools SNP 520553 520553 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1832 SAMTools SNP 520636 520636 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1833 SAMTools SNP 4740 4740 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1833 SAMTools SNP 4770 4770 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1833 SAMTools SNP 49021 49021 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1833 SAMTools SNP 49223 49223 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1833 SAMTools SNP 49229 49229 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold1833 SAMTools SNP 49294 49294 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1833 SAMTools SNP 167995 167995 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1833 SAMTools SNP 168096 168096 45.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold1834 SAMTools SNP 26139 26139 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold1834 SAMTools SNP 41584 41584 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1834 SAMTools SNP 41607 41607 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 43502 43502 14.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold1834 SAMTools SNP 44555 44555 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1834 SAMTools SNP 44713 44713 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 45290 45290 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 45302 45302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 45458 45458 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 45477 45477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 46108 46108 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1834 SAMTools SNP 46159 46159 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C33%2C0:63 scaffold1834 SAMTools SNP 46571 46571 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 49236 49236 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 49440 49440 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 51384 51384 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 53038 53038 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1834 SAMTools SNP 53039 53039 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1834 SAMTools SNP 53450 53450 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold1834 SAMTools SNP 53471 53471 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1834 SAMTools SNP 64953 64953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1834 SAMTools SNP 65288 65288 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1834 SAMTools SNP 65289 65289 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 66153 66153 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1834 SAMTools SNP 66313 66313 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1834 SAMTools SNP 66361 66361 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 66397 66397 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1834 SAMTools SNP 66820 66820 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1834 SAMTools SNP 66860 66860 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1834 SAMTools SNP 66884 66884 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1834 SAMTools SNP 67253 67253 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1834 SAMTools SNP 67286 67286 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1834 SAMTools SNP 67391 67391 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1834 SAMTools SNP 67406 67406 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1834 SAMTools SNP 67427 67427 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1834 SAMTools SNP 68033 68033 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1834 SAMTools SNP 68494 68494 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.054%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1834 SAMTools SNP 68539 68539 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C88:52 scaffold1834 SAMTools SNP 69228 69228 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1834 SAMTools SNP 69591 69591 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C200:99 scaffold1834 SAMTools SNP 69778 69778 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.02%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1834 SAMTools SNP 70006 70006 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C187:99 scaffold1834 SAMTools SNP 70214 70214 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 70667 70667 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1834 SAMTools SNP 70966 70966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1834 SAMTools SNP 71056 71056 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 71434 71434 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 71479 71479 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1834 SAMTools SNP 71504 71504 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C127:79 scaffold1834 SAMTools SNP 71653 71653 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.021%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C198:47 scaffold1834 SAMTools SNP 71937 71937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1834 SAMTools SNP 72447 72447 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C15%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C2.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1834 SAMTools SNP 72540 72540 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 72738 72738 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1834 SAMTools SNP 72922 72922 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.093%2C0.043%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1834 SAMTools SNP 73184 73184 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C124:79 scaffold1834 SAMTools SNP 73350 73350 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 73441 73441 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1834 SAMTools SNP 73842 73842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1834 SAMTools SNP 74876 74876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1834 SAMTools SNP 75573 75573 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1834 SAMTools SNP 76045 76045 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1834 SAMTools SNP 76260 76260 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1834 SAMTools SNP 76542 76542 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1834 SAMTools SNP 76709 76709 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C80:83 scaffold1834 SAMTools SNP 76790 76790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1834 SAMTools SNP 76802 76802 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C218:99 scaffold1834 SAMTools SNP 77090 77090 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 77145 77145 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C126:34 scaffold1834 SAMTools SNP 78097 78097 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 78297 78297 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1834 SAMTools SNP 78768 78768 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1834 SAMTools SNP 79485 79485 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 79799 79799 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1834 SAMTools SNP 80033 80033 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1834 SAMTools SNP 80135 80135 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.56%2C0.22%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1834 SAMTools SNP 80174 80174 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1834 SAMTools SNP 81973 81973 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 83048 83048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1834 SAMTools SNP 83062 83062 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C108%2C0:99 scaffold1834 SAMTools SNP 105256 105256 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 112050 112050 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1834 SAMTools SNP 112446 112446 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.066%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1834 SAMTools SNP 113802 113802 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 113903 113903 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1834 SAMTools SNP 115401 115401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 122872 122872 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C96%2C22%2C87%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.53%2C1.1e-94%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1834 SAMTools SNP 123052 123052 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C126%2C4%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2e-56%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 123300 123300 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1e-22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1834 SAMTools SNP 123451 123451 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C111%2C0:99 scaffold1834 SAMTools SNP 129157 129157 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1834 SAMTools SNP 133496 133496 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 167720 167720 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C22%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C5.5e-25%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C178:67 scaffold1834 SAMTools SNP 167869 167869 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C0.00042%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C112:43 scaffold1834 SAMTools SNP 167923 167923 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D34.5%3BPV4%3D0.43%2C1.4e-09%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C71:64 scaffold1834 SAMTools SNP 168754 168754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 169062 169062 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.45%2C6.5e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C234:99 scaffold1834 SAMTools SNP 169228 169228 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.63%2C6.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C224:99 scaffold1834 SAMTools SNP 169312 169312 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C36%2C0:69 scaffold1834 SAMTools SNP 170114 170114 42 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C207%2C180%2C228%2C0%2C207:51 scaffold1834 SAMTools SNP 171481 171481 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 171483 171483 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 173095 173095 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.035%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1834 SAMTools SNP 173105 173105 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.55%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1834 SAMTools SNP 173113 173113 164 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.24%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1834 SAMTools SNP 173438 173438 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 173677 173677 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.088%2C0.17%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1834 SAMTools SNP 176876 176876 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.21%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1834 SAMTools SNP 176900 176900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 176924 176924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.066%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 177507 177507 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.11%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1834 SAMTools SNP 179172 179172 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1834 SAMTools SNP 180870 180870 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 180950 180950 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C6.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C197:76 scaffold1834 SAMTools SNP 181837 181837 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C55%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 181876 181876 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.0016%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 181975 181975 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C44%2C37%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-05%2C0.41%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 182454 182454 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1834 SAMTools SNP 182565 182565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C15%2C99%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 183626 183626 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1834 SAMTools SNP 185161 185161 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 185590 185590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C65%2C63%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 185668 185668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1834 SAMTools SNP 185713 185713 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1834 SAMTools SNP 185728 185728 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 187045 187045 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 187423 187423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1834 SAMTools SNP 187432 187432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1834 SAMTools SNP 187682 187682 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.53%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1834 SAMTools SNP 187925 187925 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C0%2C18%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1834 SAMTools SNP 189721 189721 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C24%2C0:45 scaffold1834 SAMTools SNP 189856 189856 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold1834 SAMTools SNP 193467 193467 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 193506 193506 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 194117 194117 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold1834 SAMTools SNP 194165 194165 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.45%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold1834 SAMTools SNP 195730 195730 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1834 SAMTools SNP 195950 195950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1834 SAMTools SNP 196154 196154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 196160 196160 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 196724 196724 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C30%2C0:57 scaffold1834 SAMTools SNP 200684 200684 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 201067 201067 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1834 SAMTools SNP 201983 201983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1834 SAMTools SNP 203468 203468 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C75%2C0:99 scaffold1834 SAMTools SNP 203635 203635 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C105%2C0:99 scaffold1834 SAMTools SNP 203713 203713 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C51%2C0:99 scaffold1834 SAMTools SNP 206612 206612 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 206635 206635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 208867 208867 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C165:77 scaffold1834 SAMTools SNP 208894 208894 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1834 SAMTools SNP 208979 208979 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 209416 209416 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1834 SAMTools SNP 209482 209482 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C24%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.098%2C1e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1834 SAMTools SNP 209515 209515 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C16%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1834 SAMTools SNP 210401 210401 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C30%2C1%2C17%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00011%2C1%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1834 SAMTools SNP 210402 210402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C36%2C48%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D0.19%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1834 SAMTools SNP 210824 210824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C5%2C31%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.16%2C0.1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1834 SAMTools SNP 211657 211657 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 212036 212036 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.21%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1834 SAMTools SNP 212085 212085 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1834 SAMTools SNP 212398 212398 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1834 SAMTools SNP 212403 212403 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1834 SAMTools SNP 212523 212523 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0078%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1834 SAMTools SNP 212604 212604 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1834 SAMTools SNP 212857 212857 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1834 SAMTools SNP 212896 212896 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1834 SAMTools SNP 212915 212915 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1834 SAMTools SNP 212944 212944 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C36%2C0:69 scaffold1834 SAMTools SNP 214611 214611 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 214644 214644 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1834 SAMTools SNP 215202 215202 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1834 SAMTools SNP 215219 215219 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1834 SAMTools SNP 215243 215243 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.49%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C216:99 scaffold1834 SAMTools SNP 216347 216347 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1834 SAMTools SNP 216554 216554 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C69%2C0:93 scaffold1834 SAMTools SNP 219441 219441 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C24%2C0%3BMQ%3D46%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C199:99 scaffold1834 SAMTools SNP 219451 219451 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C9%2C0%3BMQ%3D43%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C167:66 scaffold1834 SAMTools SNP 219648 219648 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1834 SAMTools SNP 221382 221382 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1834 SAMTools SNP 224128 224128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 224165 224165 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1834 SAMTools SNP 224627 224627 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C74%2C117%2C3%3BMQ%3D37%3BFQ%3D225%3BPV4%3D5.5e-19%2C0.011%2C1%2C5.1e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 224744 224744 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C81%2C0%2C62%3BMQ%3D25%3BFQ%3D123%3BPV4%3D1%2C1%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C202:99 scaffold1834 SAMTools SNP 227386 227386 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 227401 227401 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 229153 229153 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1834 SAMTools SNP 229337 229337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C6%2C63%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.058%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 229588 229588 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1834 SAMTools SNP 229945 229945 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 231501 231501 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C49%2C10%2C60%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0025%2C1.9e-117%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1834 SAMTools SNP 231844 231844 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C331%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 232133 232133 181 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C4%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C160%2C0%2C208%2C136%2C205:99 scaffold1834 SAMTools SNP 232142 232142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C12%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1834 SAMTools SNP 232235 232235 67.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C0:39 scaffold1834 SAMTools SNP 232253 232253 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C43%2C4%2C20%3BMQ%3D50%3BFQ%3D82%3BPV4%3D5e-06%2C7.8e-12%2C1%2C2.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1834 SAMTools SNP 232343 232343 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C6%2C13%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.75%2C3.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1834 SAMTools SNP 234449 234449 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1834 SAMTools SNP 234505 234505 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.61%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1834 SAMTools SNP 234619 234619 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C114%2C0:99 scaffold1834 SAMTools SNP 234667 234667 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C25%2C4%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.73%2C1.1e-24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1834 SAMTools SNP 235282 235282 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C4%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C9.4e-26%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1834 SAMTools SNP 235342 235342 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.58%2C9.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1834 SAMTools SNP 236285 236285 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C132:48 scaffold1834 SAMTools SNP 237307 237307 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold1834 SAMTools SNP 237441 237441 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C39%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1834 SAMTools SNP 237565 237565 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1834 SAMTools SNP 238407 238407 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C68%2C8%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 239195 239195 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C82%2C26%2C22%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.19%2C1%2C0.04%2C1.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1834 SAMTools SNP 239398 239398 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1834 SAMTools SNP 241479 241479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1834 SAMTools SNP 243508 243508 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0015%2C0.024%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1834 SAMTools SNP 243510 243510 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0066%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1834 SAMTools SNP 244642 244642 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1834 SAMTools SNP 244825 244825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C42%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 244870 244870 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 245394 245394 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C207:53 scaffold1834 SAMTools SNP 245738 245738 40.5 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C17%2C5%2C68%2C0%2C65:21 scaffold1834 SAMTools SNP 246005 246005 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C36%2C0:69 scaffold1834 SAMTools SNP 246492 246492 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1834 SAMTools SNP 246911 246911 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.26%2C0.0031%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1834 SAMTools SNP 247005 247005 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C45%2C0:76 scaffold1834 SAMTools SNP 247890 247890 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C8%2C97%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.45%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1834 SAMTools SNP 248769 248769 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold1834 SAMTools SNP 248797 248797 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C57%2C0:99 scaffold1834 SAMTools SNP 262977 262977 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 262990 262990 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold1834 SAMTools SNP 263041 263041 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.38%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold1834 SAMTools SNP 263590 263590 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 263967 263967 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 265777 265777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1834 SAMTools SNP 265890 265890 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C12%2C0:21 scaffold1834 SAMTools SNP 266559 266559 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 266595 266595 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 266836 266836 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 266899 266899 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 267335 267335 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 267378 267378 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1834 SAMTools SNP 267387 267387 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1834 SAMTools SNP 267441 267441 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 267612 267612 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 267982 267982 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 267997 267997 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1834 SAMTools SNP 268015 268015 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1834 SAMTools SNP 268364 268364 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1834 SAMTools SNP 268808 268808 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0032%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C40:40 scaffold1834 SAMTools SNP 269584 269584 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1834 SAMTools SNP 269625 269625 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold1834 SAMTools SNP 269628 269628 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1834 SAMTools SNP 269649 269649 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 269652 269652 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 269712 269712 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1834 SAMTools SNP 270237 270237 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1834 SAMTools SNP 270827 270827 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1834 SAMTools SNP 270862 270862 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0063%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1834 SAMTools SNP 271334 271334 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0026%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1834 SAMTools SNP 271847 271847 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1834 SAMTools SNP 272045 272045 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C63%2C0:99 scaffold1834 SAMTools SNP 272219 272219 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 272265 272265 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1834 SAMTools SNP 272792 272792 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 273102 273102 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.26%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1834 SAMTools SNP 274295 274295 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1834 SAMTools SNP 274997 274997 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00068%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold1834 SAMTools SNP 275048 275048 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1834 SAMTools SNP 276054 276054 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C7%2C12%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.063%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1834 SAMTools SNP 276101 276101 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1834 SAMTools SNP 276878 276878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1834 SAMTools SNP 282228 282228 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.017%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1834 SAMTools SNP 282748 282748 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1834 SAMTools SNP 282798 282798 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 283805 283805 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C0.46%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1834 SAMTools SNP 285050 285050 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C252:99 scaffold1834 SAMTools SNP 285053 285053 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1834 SAMTools SNP 285654 285654 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1834 SAMTools SNP 286821 286821 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C226:51 scaffold1834 SAMTools SNP 286877 286877 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1834 SAMTools SNP 286905 286905 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1834 SAMTools SNP 287753 287753 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1834 SAMTools SNP 287982 287982 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C0.38%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C251:99 scaffold1834 SAMTools SNP 288171 288171 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1834 SAMTools SNP 288775 288775 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1834 SAMTools SNP 288841 288841 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.067%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1834 SAMTools SNP 289068 289068 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 289213 289213 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C239:99 scaffold1834 SAMTools SNP 289353 289353 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C229%2C0:99 scaffold1834 SAMTools SNP 293545 293545 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1834 SAMTools SNP 294484 294484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1834 SAMTools SNP 294501 294501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1834 SAMTools SNP 294907 294907 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1834 SAMTools SNP 294910 294910 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1834 SAMTools SNP 295115 295115 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C22%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.014%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C231:99 scaffold1834 SAMTools SNP 295226 295226 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1834 SAMTools SNP 300221 300221 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1834 SAMTools SNP 300226 300226 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 300242 300242 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1834 SAMTools SNP 300737 300737 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 302216 302216 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C58%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1834 SAMTools SNP 303393 303393 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C59%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C187:99 scaffold1834 SAMTools SNP 303418 303418 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1834 SAMTools SNP 305744 305744 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C3.2e-121%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1834 SAMTools SNP 306018 306018 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.68%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1834 SAMTools SNP 306198 306198 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1834 SAMTools SNP 306215 306215 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C1%2C15%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.037%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1834 SAMTools SNP 306685 306685 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1834 SAMTools SNP 306704 306704 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1834 SAMTools SNP 306739 306739 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1834 SAMTools SNP 306746 306746 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1834 SAMTools SNP 306767 306767 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1834 SAMTools SNP 306910 306910 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 309560 309560 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1834 SAMTools SNP 309810 309810 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0051%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 309814 309814 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 312265 312265 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1834 SAMTools SNP 315861 315861 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 316368 316368 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 316379 316379 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 325600 325600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 325789 325789 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C5%2C13%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.75%2C3.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1834 SAMTools SNP 325810 325810 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1834 SAMTools SNP 326749 326749 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.63%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1834 SAMTools SNP 326895 326895 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1834 SAMTools SNP 327110 327110 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C2%2C11%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.72%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1834 SAMTools SNP 329541 329541 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C5%3BMQ%3D49%3BFQ%3D-34%3BPV4%3D0.32%2C1%2C0.41%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1834 SAMTools SNP 333297 333297 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1834 SAMTools SNP 335050 335050 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C11%2C17%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.26%2C2.6e-15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C187:99 scaffold1834 SAMTools SNP 335074 335074 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C4.7e-24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1834 SAMTools SNP 335194 335194 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C19%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.53%2C3e-54%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1834 SAMTools SNP 335310 335310 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C3%2C30%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0054%2C3.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1834 SAMTools SNP 335476 335476 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold1834 SAMTools SNP 338087 338087 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 338111 338111 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 343552 343552 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1834 SAMTools SNP 343633 343633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1834 SAMTools SNP 343642 343642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1834 SAMTools SNP 344423 344423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1834 SAMTools SNP 344489 344489 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1834 SAMTools SNP 344537 344537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1834 SAMTools SNP 344957 344957 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1834 SAMTools SNP 345645 345645 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1834 SAMTools SNP 355116 355116 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1834 SAMTools SNP 358219 358219 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C75%2C0:99 scaffold1834 SAMTools SNP 360508 360508 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1834 SAMTools SNP 360538 360538 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1834 SAMTools SNP 362063 362063 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C24%2C0:45 scaffold1834 SAMTools SNP 362135 362135 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C33%2C0:63 scaffold1834 SAMTools SNP 365714 365714 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 365717 365717 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1834 SAMTools SNP 366666 366666 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1834 SAMTools SNP 367400 367400 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1834 SAMTools SNP 367415 367415 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 367442 367442 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 367451 367451 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1834 SAMTools SNP 367838 367838 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1834 SAMTools SNP 368002 368002 103 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C107:99 scaffold1834 SAMTools SNP 368639 368639 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold1834 SAMTools SNP 369842 369842 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1834 SAMTools SNP 370312 370312 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C230:49 scaffold1834 SAMTools SNP 370752 370752 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D38%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C88:68 scaffold1834 SAMTools SNP 370924 370924 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold1834 SAMTools SNP 371363 371363 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C84:34 scaffold1834 SAMTools SNP 371799 371799 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1834 SAMTools SNP 372382 372382 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 372427 372427 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1834 SAMTools SNP 372746 372746 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 372885 372885 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1834 SAMTools SNP 372912 372912 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1834 SAMTools SNP 372930 372930 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold1834 SAMTools SNP 373626 373626 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1834 SAMTools SNP 373674 373674 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1834 SAMTools SNP 376289 376289 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1834 SAMTools SNP 377148 377148 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C13%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.27%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1834 SAMTools SNP 377154 377154 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1834 SAMTools SNP 377168 377168 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C4%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.054%2C4.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1834 SAMTools SNP 377283 377283 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold1834 SAMTools SNP 377301 377301 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C184:95 scaffold1834 SAMTools SNP 378108 378108 72.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold1834 SAMTools SNP 392117 392117 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold1834 SAMTools SNP 399707 399707 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1834 SAMTools SNP 399725 399725 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1834 SAMTools SNP 399757 399757 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1834 SAMTools SNP 405003 405003 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1834 SAMTools SNP 436449 436449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1834 SAMTools SNP 436894 436894 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C14%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.017%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1834 SAMTools SNP 437526 437526 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold1834 SAMTools SNP 437574 437574 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1834 SAMTools SNP 439320 439320 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1834 SAMTools SNP 440550 440550 38.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold1834 SAMTools SNP 441580 441580 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C23:26 scaffold1834 SAMTools SNP 474383 474383 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1835 SAMTools SNP 4962 4962 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold1835 SAMTools SNP 4983 4983 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1835 SAMTools SNP 5771 5771 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1835 SAMTools SNP 5788 5788 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.55%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1835 SAMTools SNP 7592 7592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 7631 7631 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C26%2C0%2C33%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1.4e-16%2C4.4e-34%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1835 SAMTools SNP 10485 10485 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C40%2C10%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.78%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1835 SAMTools SNP 10746 10746 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C13%2C379%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1835 SAMTools SNP 10970 10970 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C4%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1835 SAMTools SNP 10979 10979 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1835 SAMTools SNP 11973 11973 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C192%2C44%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 17052 17052 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C35%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D4.9e-06%2C5.2e-64%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1835 SAMTools SNP 22731 22731 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.016%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1835 SAMTools SNP 25637 25637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1835 SAMTools SNP 25703 25703 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1835 SAMTools SNP 39983 39983 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.1e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold1835 SAMTools SNP 45750 45750 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1835 SAMTools SNP 46048 46048 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C66%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1835 SAMTools SNP 46097 46097 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1835 SAMTools SNP 46988 46988 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C18%2C0:33 scaffold1835 SAMTools SNP 49325 49325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1835 SAMTools SNP 49349 49349 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1835 SAMTools SNP 49395 49395 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 49594 49594 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 49597 49597 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 50234 50234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 50421 50421 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.31%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold1835 SAMTools SNP 52559 52559 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1835 SAMTools SNP 52581 52581 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold1835 SAMTools SNP 54414 54414 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1835 SAMTools SNP 54904 54904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1835 SAMTools SNP 55760 55760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 56170 56170 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.42%3BPV4%3D0.2%2C0.0022%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C35:38 scaffold1835 SAMTools SNP 56198 56198 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.12%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C113:49 scaffold1835 SAMTools SNP 58148 58148 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold1835 SAMTools SNP 58666 58666 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1835 SAMTools SNP 58819 58819 7.62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.6242%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D0.2%2C0.056%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C4:8 scaffold1835 SAMTools SNP 60975 60975 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1835 SAMTools SNP 61213 61213 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C82%2C27%2C82%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C2.1e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1835 SAMTools SNP 61414 61414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1835 SAMTools SNP 61507 61507 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 61851 61851 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C10%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.02%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1835 SAMTools SNP 62489 62489 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 63797 63797 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1835 SAMTools SNP 64278 64278 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1835 SAMTools SNP 64360 64360 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C5%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 64973 64973 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 65666 65666 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.49%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 70388 70388 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 77138 77138 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C0%2C16%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.31%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1835 SAMTools SNP 78177 78177 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C72%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.082%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 81229 81229 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C17%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C248:99 scaffold1835 SAMTools SNP 81241 81241 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C17%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C248:99 scaffold1835 SAMTools SNP 82320 82320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold1835 SAMTools SNP 83314 83314 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 83779 83779 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1835 SAMTools SNP 86880 86880 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0021%2C1%2C1%2C5.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1835 SAMTools SNP 86893 86893 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.039%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 86917 86917 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.29%2C0.097%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1835 SAMTools SNP 89066 89066 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C241:69 scaffold1835 SAMTools SNP 89171 89171 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1835 SAMTools SNP 89591 89591 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C0%2C16%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1.4e-05%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1835 SAMTools SNP 89648 89648 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 93981 93981 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.56%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1835 SAMTools SNP 94209 94209 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1835 SAMTools SNP 94230 94230 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.34%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1835 SAMTools SNP 108292 108292 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1835 SAMTools SNP 133543 133543 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 134759 134759 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 134777 134777 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1835 SAMTools SNP 135250 135250 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 136611 136611 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 136621 136621 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1835 SAMTools SNP 137042 137042 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 137083 137083 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 137092 137092 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold1835 SAMTools SNP 137407 137407 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 137551 137551 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1835 SAMTools SNP 139106 139106 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 139109 139109 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 139142 139142 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 141927 141927 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1835 SAMTools SNP 142908 142908 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 142926 142926 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 143379 143379 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.56%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1835 SAMTools SNP 143508 143508 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D1%2C0.02%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C80:75 scaffold1835 SAMTools SNP 143908 143908 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C7.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C219:30 scaffold1835 SAMTools SNP 144141 144141 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C45%2C0:87 scaffold1835 SAMTools SNP 144360 144360 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C21%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.69%2C2.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1835 SAMTools SNP 144409 144409 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C14%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.68%2C3.3e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1835 SAMTools SNP 144971 144971 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold1835 SAMTools SNP 145970 145970 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.28%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C71:74 scaffold1835 SAMTools SNP 147929 147929 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C15%2C14%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.81%2C1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1835 SAMTools SNP 149659 149659 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C30%2C0:57 scaffold1835 SAMTools SNP 151682 151682 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.43%2C1.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1835 SAMTools SNP 152031 152031 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1835 SAMTools SNP 152704 152704 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1835 SAMTools SNP 152919 152919 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1835 SAMTools SNP 152934 152934 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1835 SAMTools SNP 152943 152943 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1835 SAMTools SNP 154606 154606 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1835 SAMTools SNP 154615 154615 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1835 SAMTools SNP 155231 155231 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1835 SAMTools SNP 163826 163826 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 164014 164014 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 164399 164399 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1835 SAMTools SNP 165196 165196 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold1835 SAMTools SNP 166192 166192 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1835 SAMTools SNP 166265 166265 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 166749 166749 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1835 SAMTools SNP 167678 167678 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.33%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C80:60 scaffold1835 SAMTools SNP 167741 167741 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C217:99 scaffold1835 SAMTools SNP 168199 168199 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1835 SAMTools SNP 168226 168226 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 169303 169303 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 169360 169360 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1835 SAMTools SNP 169746 169746 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.015%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1835 SAMTools SNP 170074 170074 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1835 SAMTools SNP 170726 170726 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1835 SAMTools SNP 172278 172278 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1835 SAMTools SNP 172281 172281 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1835 SAMTools SNP 172390 172390 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1835 SAMTools SNP 174776 174776 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1835 SAMTools SNP 174916 174916 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1835 SAMTools SNP 207670 207670 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0084%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C88:37 scaffold1835 SAMTools SNP 208994 208994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C8%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1835 SAMTools SNP 209006 209006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1835 SAMTools SNP 209048 209048 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C11%2C12%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.59%2C1.1e-35%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1835 SAMTools SNP 209545 209545 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1835 SAMTools SNP 210581 210581 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1835 SAMTools SNP 211775 211775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C43%2C7%2C16%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.076%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 211849 211849 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C50%2C30%2C47%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C1.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 212990 212990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 213149 213149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 216830 216830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 216837 216837 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 217561 217561 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1835 SAMTools SNP 220585 220585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C8%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0056%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1835 SAMTools SNP 230835 230835 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1835 SAMTools SNP 265045 265045 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1934%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C55%2C16%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1.8e-12%2C2e-24%2C1%2C3.3e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1835 SAMTools SNP 265835 265835 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7089%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C13%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.62%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C85:88 scaffold1835 SAMTools SNP 268155 268155 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1835 SAMTools SNP 268859 268859 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C135%2C0:99 scaffold1835 SAMTools SNP 276681 276681 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1835 SAMTools SNP 276695 276695 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.53%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1835 SAMTools SNP 276792 276792 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1835 SAMTools SNP 277093 277093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C39%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1835 SAMTools SNP 278078 278078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1835 SAMTools SNP 280160 280160 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C14%2C42%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 280181 280181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C9%2C65%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.31%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 286351 286351 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1835 SAMTools SNP 286368 286368 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 289815 289815 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1835 SAMTools SNP 290229 290229 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold1835 SAMTools SNP 290637 290637 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1835 SAMTools SNP 290673 290673 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold1835 SAMTools SNP 291946 291946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1835 SAMTools SNP 291985 291985 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1835 SAMTools SNP 292193 292193 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0114%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C192:30 scaffold1835 SAMTools SNP 292375 292375 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1835 SAMTools SNP 292643 292643 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.24%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1835 SAMTools SNP 292989 292989 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 293004 293004 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 293046 293046 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1835 SAMTools SNP 293144 293144 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.18%2C0.046%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C232:31 scaffold1835 SAMTools SNP 294136 294136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1835 SAMTools SNP 294216 294216 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 296678 296678 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1835 SAMTools SNP 296879 296879 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1835 SAMTools SNP 296906 296906 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1835 SAMTools SNP 344041 344041 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C25%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.69%2C1e-41%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1835 SAMTools SNP 344831 344831 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C68%2C17%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 345012 345012 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C71%2C21%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 345041 345041 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C100%2C4%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 345604 345604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 346067 346067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C6%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 346242 346242 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C3%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1835 SAMTools SNP 372354 372354 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C18%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C69:48 scaffold1835 SAMTools SNP 374072 374072 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C39%2C0:75 scaffold1835 SAMTools SNP 374331 374331 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1835 SAMTools SNP 379113 379113 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1835 SAMTools SNP 380840 380840 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1835 SAMTools SNP 380975 380975 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.12%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1835 SAMTools SNP 381364 381364 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C33%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C4.9e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1835 SAMTools SNP 385302 385302 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1835 SAMTools SNP 385662 385662 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold1835 SAMTools SNP 385818 385818 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C254:99 scaffold1835 SAMTools SNP 385859 385859 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1835 SAMTools SNP 386780 386780 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1835 SAMTools SNP 387891 387891 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.095%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1835 SAMTools SNP 388407 388407 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0187%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1835 SAMTools SNP 388419 388419 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0222%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1835 SAMTools SNP 388434 388434 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1835 SAMTools SNP 390470 390470 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1835 SAMTools SNP 390767 390767 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1835 SAMTools SNP 390801 390801 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1835 SAMTools SNP 391487 391487 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.19%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1835 SAMTools SNP 394964 394964 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1835 SAMTools SNP 415771 415771 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1835 SAMTools SNP 416648 416648 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1835 SAMTools SNP 416663 416663 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1835 SAMTools SNP 422117 422117 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C24%2C0:45 scaffold1836 SAMTools SNP 34600 34600 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 142820 142820 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C2.7e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C23:26 scaffold1836 SAMTools SNP 147110 147110 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C4.5e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C26:29 scaffold1836 SAMTools SNP 147135 147135 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold1836 SAMTools SNP 172375 172375 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C79:37 scaffold1836 SAMTools SNP 181258 181258 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.28%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C137:99 scaffold1836 SAMTools SNP 189531 189531 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 196580 196580 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1836 SAMTools SNP 200357 200357 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1836 SAMTools SNP 202991 202991 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1836 SAMTools SNP 210724 210724 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1836 SAMTools SNP 211066 211066 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 211766 211766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C46%3BMQ%3D50%3BFQ%3D-259%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1836 SAMTools SNP 211814 211814 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C24%2C0:45 scaffold1836 SAMTools SNP 211854 211854 156 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C53%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C166%2C0%2C172%2C131%2C169:99 scaffold1836 SAMTools SNP 211889 211889 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 212219 212219 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1836 SAMTools SNP 212222 212222 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1836 SAMTools SNP 215249 215249 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 215264 215264 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 215919 215919 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 217175 217175 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1836 SAMTools SNP 217391 217391 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1836 SAMTools SNP 220399 220399 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1836 SAMTools SNP 245066 245066 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1836 SAMTools SNP 245104 245104 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1836 SAMTools SNP 245114 245114 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1836 SAMTools SNP 246634 246634 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1836 SAMTools SNP 246657 246657 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1836 SAMTools SNP 247356 247356 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 247569 247569 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1836 SAMTools SNP 249221 249221 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 264923 264923 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold1836 SAMTools SNP 265271 265271 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C29%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 265298 265298 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0013%2C0.12%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1836 SAMTools SNP 265503 265503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1836 SAMTools SNP 266214 266214 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C14%2C22%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.7%2C0.41%2C1%2C6.7e-33;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1836 SAMTools SNP 267834 267834 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C30%2C29%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 268217 268217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C132%2C5%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.49%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 268921 268921 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 273317 273317 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1836 SAMTools SNP 273371 273371 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1836 SAMTools SNP 273385 273385 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold1836 SAMTools SNP 275989 275989 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1836 SAMTools SNP 277795 277795 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1836 SAMTools SNP 278153 278153 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 278167 278167 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1836 SAMTools SNP 278198 278198 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1836 SAMTools SNP 278463 278463 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 278800 278800 32.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1836 SAMTools SNP 279521 279521 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C62%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1836 SAMTools SNP 281919 281919 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C4%2C18%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0075%2C7.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1836 SAMTools SNP 282488 282488 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1836 SAMTools SNP 282518 282518 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1836 SAMTools SNP 282521 282521 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1836 SAMTools SNP 282813 282813 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C250:54 scaffold1836 SAMTools SNP 282873 282873 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 283723 283723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C19%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.015%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 283738 283738 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 283777 283777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1836 SAMTools SNP 284210 284210 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.44%2C0.24%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1836 SAMTools SNP 284228 284228 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C24:27 scaffold1836 SAMTools SNP 284358 284358 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1836 SAMTools SNP 286776 286776 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1836 SAMTools SNP 287445 287445 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1836 SAMTools SNP 287966 287966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 288535 288535 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C136:60 scaffold1836 SAMTools SNP 288618 288618 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1836 SAMTools SNP 289071 289071 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C251:66 scaffold1836 SAMTools SNP 289104 289104 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.024%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1836 SAMTools SNP 289508 289508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 298826 298826 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.13%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1836 SAMTools SNP 299401 299401 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C107:76 scaffold1836 SAMTools SNP 299837 299837 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1836 SAMTools SNP 299903 299903 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C24%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.64%2C0.22%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1836 SAMTools SNP 308902 308902 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 308951 308951 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1836 SAMTools SNP 309280 309280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1836 SAMTools SNP 311185 311185 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.31%2C0.00039%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1836 SAMTools SNP 311212 311212 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1836 SAMTools SNP 311730 311730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1836 SAMTools SNP 311764 311764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1836 SAMTools SNP 311794 311794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1836 SAMTools SNP 311980 311980 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1836 SAMTools SNP 312001 312001 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1836 SAMTools SNP 329745 329745 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.25%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C235:99 scaffold1836 SAMTools SNP 329769 329769 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1836 SAMTools SNP 329775 329775 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1836 SAMTools SNP 329896 329896 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1836 SAMTools SNP 330260 330260 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 330303 330303 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1836 SAMTools SNP 330634 330634 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1836 SAMTools SNP 332089 332089 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1836 SAMTools SNP 332093 332093 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1836 SAMTools SNP 332124 332124 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1836 SAMTools SNP 333904 333904 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1836 SAMTools SNP 333926 333926 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1836 SAMTools SNP 334304 334304 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 334643 334643 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1836 SAMTools SNP 339026 339026 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 341649 341649 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1836 SAMTools SNP 343171 343171 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1836 SAMTools SNP 344387 344387 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1836 SAMTools SNP 344418 344418 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold1836 SAMTools SNP 344431 344431 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1836 SAMTools SNP 348055 348055 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1836 SAMTools SNP 348070 348070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1836 SAMTools SNP 348809 348809 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1836 SAMTools SNP 431608 431608 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1836 SAMTools SNP 431952 431952 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1836 SAMTools SNP 431963 431963 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C13%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C129:99 scaffold1836 SAMTools SNP 434543 434543 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1836 SAMTools SNP 434902 434902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 434988 434988 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1836 SAMTools SNP 436386 436386 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1836 SAMTools SNP 444503 444503 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1836 SAMTools SNP 444887 444887 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1836 SAMTools SNP 445896 445896 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C5%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1836 SAMTools SNP 448499 448499 39.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1836 SAMTools SNP 450967 450967 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.6%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1836 SAMTools SNP 452113 452113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1836 SAMTools SNP 452125 452125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 458315 458315 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0061%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C121:56 scaffold1836 SAMTools SNP 458668 458668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C12%3BMQ%3D49%3BFQ%3D-105%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1836 SAMTools SNP 459302 459302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C54%2C29%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C0.12%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 459317 459317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C47%2C28%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.39%2C0.12%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 462940 462940 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1836 SAMTools SNP 462959 462959 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold1836 SAMTools SNP 463114 463114 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1836 SAMTools SNP 466503 466503 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1836 SAMTools SNP 466577 466577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C167%2C9%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold1836 SAMTools SNP 466581 466581 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C9%2C38%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.089%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1836 SAMTools SNP 468898 468898 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D689%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1836 SAMTools SNP 468919 468919 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D741%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C379%2C294%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 468973 468973 87 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D948%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C181%2C0%2C102%2C131%2C96:99 scaffold1836 SAMTools SNP 469081 469081 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1275%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C558%2C311%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 469099 469099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1380%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C521%2C844%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.2e-27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 469645 469645 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D631%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C128%2C162%2C46%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.00092%2C1.1e-293%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1836 SAMTools SNP 474513 474513 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C35:38 scaffold1836 SAMTools SNP 474663 474663 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1836 SAMTools SNP 474765 474765 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold1836 SAMTools SNP 476376 476376 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1836 SAMTools SNP 476733 476733 39.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1836 SAMTools SNP 477525 477525 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 477793 477793 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 477917 477917 88 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold1836 SAMTools SNP 480854 480854 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 485356 485356 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.27%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1836 SAMTools SNP 490640 490640 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1836 SAMTools SNP 490934 490934 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1836 SAMTools SNP 495287 495287 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2937%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C1078%2C541%2C1110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-26%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 496407 496407 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1129%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D349%2C242%2C259%2C278%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 496783 496783 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1099%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C541%2C90%2C393%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 497729 497729 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C31%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00035%2C7.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1836 SAMTools SNP 498998 498998 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C271%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C255%2C0:99 scaffold1836 SAMTools SNP 499862 499862 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1836 SAMTools SNP 500531 500531 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1499%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D255%2C630%2C172%2C416%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.86%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1836 SAMTools SNP 500669 500669 31.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D948%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1836 SAMTools SNP 500748 500748 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D664%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold1836 SAMTools SNP 500807 500807 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2636%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1033%2C297%2C1020%2C257%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.18%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1836 SAMTools SNP 500960 500960 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1285%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C132%2C517%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C255%2C0:99 scaffold1836 SAMTools SNP 503314 503314 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1836 SAMTools SNP 503884 503884 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C28%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 503921 503921 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C11%2C103%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.64%2C6e-159%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1836 SAMTools SNP 503977 503977 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C9%2C39%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C7.1e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1836 SAMTools SNP 505268 505268 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D723%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C274%2C40%2C355%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 507248 507248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1836 SAMTools SNP 507255 507255 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1836 SAMTools SNP 507267 507267 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C0%2C7%3BMQ%3D49%3BFQ%3D24%3BPV4%3D0.016%2C0.017%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1836 SAMTools SNP 507666 507666 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 507786 507786 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C54%2C0:99 scaffold1836 SAMTools SNP 511125 511125 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C5.6e-12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C207:99 scaffold1836 SAMTools SNP 512680 512680 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C6%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.27%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1836 SAMTools SNP 512734 512734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.023%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 513045 513045 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.27%2C0.12%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C131:99 scaffold1836 SAMTools SNP 513159 513159 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1836 SAMTools SNP 514014 514014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C18%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.16%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 515273 515273 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 515453 515453 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C7%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.47%2C0.057%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1836 SAMTools SNP 517593 517593 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1836 SAMTools SNP 517667 517667 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C13%2C17%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.12%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1836 SAMTools SNP 518527 518527 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1836 SAMTools SNP 519692 519692 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1836 SAMTools SNP 540928 540928 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1836 SAMTools SNP 552380 552380 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C150:99 scaffold1836 SAMTools SNP 552398 552398 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C150:99 scaffold1836 SAMTools SNP 555156 555156 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1836 SAMTools SNP 555189 555189 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1836 SAMTools SNP 557159 557159 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1836 SAMTools SNP 558505 558505 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.41%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1836 SAMTools SNP 558958 558958 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1836 SAMTools SNP 558990 558990 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1836 SAMTools SNP 559563 559563 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1836 SAMTools SNP 559581 559581 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.19%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold1836 SAMTools SNP 559594 559594 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1836 SAMTools SNP 559651 559651 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1836 SAMTools SNP 560046 560046 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1836 SAMTools SNP 560064 560064 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold1836 SAMTools SNP 560835 560835 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.51%2C0.0013%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1836 SAMTools SNP 561193 561193 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1836 SAMTools SNP 561211 561211 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 563727 563727 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 564048 564048 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1836 SAMTools SNP 564124 564124 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C243:99 scaffold1836 SAMTools SNP 565291 565291 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1836 SAMTools SNP 590451 590451 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 590456 590456 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 602845 602845 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1836 SAMTools SNP 603630 603630 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.042%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1836 SAMTools SNP 644817 644817 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1836 SAMTools SNP 644843 644843 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1836 SAMTools SNP 645185 645185 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold1836 SAMTools SNP 645891 645891 96.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold1836 SAMTools SNP 646089 646089 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1836 SAMTools SNP 669224 669224 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1836 SAMTools SNP 671496 671496 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1836 SAMTools SNP 671504 671504 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1836 SAMTools SNP 671535 671535 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold1836 SAMTools SNP 673897 673897 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1836 SAMTools SNP 673936 673936 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold1836 SAMTools SNP 674598 674598 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1836 SAMTools SNP 676310 676310 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1836 SAMTools SNP 676331 676331 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 682064 682064 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold1836 SAMTools SNP 706471 706471 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C364%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 706492 706492 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C26%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1836 SAMTools SNP 706561 706561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C282%2C298%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 706577 706577 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1836 SAMTools SNP 708049 708049 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1836 SAMTools SNP 709390 709390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C153%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 713334 713334 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C4%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 713337 713337 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 715605 715605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C14%2C148%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C2.1e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 715659 715659 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C53%2C63%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 715973 715973 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C107%2C18%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1.4e-05%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1836 SAMTools SNP 716653 716653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C55%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1836 SAMTools SNP 717170 717170 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C7%2C238%2C1%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D8.8e-11%2C2.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 717325 717325 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.55%2C0.0001%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C176:81 scaffold1836 SAMTools SNP 717338 717338 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C16%2C28%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.69%2C3.5e-12%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C140:99 scaffold1836 SAMTools SNP 722919 722919 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1836 SAMTools SNP 724303 724303 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00041%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1836 SAMTools SNP 726272 726272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1836 SAMTools SNP 726456 726456 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1836 SAMTools SNP 727790 727790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1836 SAMTools SNP 727837 727837 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold1836 SAMTools SNP 729128 729128 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C158:99 scaffold1836 SAMTools SNP 755624 755624 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C5.7e-15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C196:59 scaffold1836 SAMTools SNP 760871 760871 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C35:38 scaffold1836 SAMTools SNP 763539 763539 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C5.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold1836 SAMTools SNP 765588 765588 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1836 SAMTools SNP 769474 769474 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C19%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 771258 771258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 772570 772570 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.23%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1836 SAMTools SNP 774112 774112 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C186:99 scaffold1836 SAMTools SNP 774519 774519 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C8%2C20%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.00014%2C0.13%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1836 SAMTools SNP 777800 777800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C209%2C44%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-08%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 777821 777821 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C84%2C29%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.006%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 783499 783499 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C17%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C226:99 scaffold1836 SAMTools SNP 783527 783527 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C34%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C6.2e-60%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C254:92 scaffold1836 SAMTools SNP 785933 785933 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C7%2C13%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.14%2C2.6e-30%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1836 SAMTools SNP 786200 786200 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C5.1e-23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C172:79 scaffold1836 SAMTools SNP 786596 786596 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.4%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1836 SAMTools SNP 789472 789472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C5%2C31%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.66%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold1836 SAMTools SNP 789695 789695 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 794707 794707 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1836 SAMTools SNP 794748 794748 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1836 SAMTools SNP 799655 799655 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 813593 813593 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C60%2C0:99 scaffold1836 SAMTools SNP 814793 814793 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1836 SAMTools SNP 816065 816065 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold1836 SAMTools SNP 816140 816140 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.52%2C3.2e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C221:84 scaffold1836 SAMTools SNP 816358 816358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 816382 816382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 816905 816905 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C39%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1836 SAMTools SNP 817418 817418 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C31%2C11%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 818095 818095 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1836 SAMTools SNP 819847 819847 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1836 SAMTools SNP 819848 819848 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1836 SAMTools SNP 819975 819975 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D119%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D9.5e-07%2C0.00093%2C1%2C3.6e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C178:33 scaffold1836 SAMTools SNP 822058 822058 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C90%2C0:99 scaffold1836 SAMTools SNP 823942 823942 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.0017%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 824014 824014 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C33%2C45%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.041%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 824853 824853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 824895 824895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C50%2C96%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1.7e-09%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 849827 849827 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C4e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 852243 852243 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1836 SAMTools SNP 852976 852976 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 863299 863299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 863305 863305 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 865720 865720 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1836 SAMTools SNP 865752 865752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 868777 868777 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.49%2C0.00017%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold1836 SAMTools SNP 868786 868786 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.21%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold1836 SAMTools SNP 868795 868795 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C15%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D5.4e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1836 SAMTools SNP 868806 868806 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C0.49%2C1%2C4.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 868819 868819 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1836 SAMTools SNP 870191 870191 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 871851 871851 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C33%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1836 SAMTools SNP 871902 871902 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C39%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1836 SAMTools SNP 873551 873551 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C4%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 874266 874266 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C4%3BMQ%3D49%3BFQ%3D36%3BPV4%3D0.54%2C1%2C0.0092%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1836 SAMTools SNP 874337 874337 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 878480 878480 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0064%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1836 SAMTools SNP 878532 878532 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0270%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.22%2C0.1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1836 SAMTools SNP 878557 878557 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C1%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.55%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1836 SAMTools SNP 923740 923740 48.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold1836 SAMTools SNP 923916 923916 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.6%2C0.0059%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1836 SAMTools SNP 924360 924360 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C45%2C0:87 scaffold1836 SAMTools SNP 924913 924913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1836 SAMTools SNP 925593 925593 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C245:99 scaffold1836 SAMTools SNP 925620 925620 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1836 SAMTools SNP 930567 930567 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.00072%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1836 SAMTools SNP 931397 931397 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D847%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D43%2C47%2C648%2C102%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D1.3e-15%2C2.6e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C88%2C0:99 scaffold1836 SAMTools SNP 931471 931471 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D753%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C599%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1836 SAMTools SNP 932145 932145 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C255%2C0:99 scaffold1836 SAMTools SNP 932490 932490 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0002%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C253:28 scaffold1836 SAMTools SNP 932502 932502 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8.2e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C226:33 scaffold1836 SAMTools SNP 939223 939223 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1836 SAMTools SNP 939472 939472 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1836 SAMTools SNP 939881 939881 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1836 SAMTools SNP 950832 950832 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C63%2C0:99 scaffold1836 SAMTools SNP 951004 951004 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C78%2C0:99 scaffold1836 SAMTools SNP 951409 951409 22.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1836 SAMTools SNP 952278 952278 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C60%2C0:99 scaffold1836 SAMTools SNP 955367 955367 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C202:75 scaffold1836 SAMTools SNP 956035 956035 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.015%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C229:51 scaffold1836 SAMTools SNP 957343 957343 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1836 SAMTools SNP 957713 957713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1836 SAMTools SNP 957955 957955 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C13%2C43%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C95%2C0:99 scaffold1836 SAMTools SNP 1038151 1038151 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1.3e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C110:39 scaffold1836 SAMTools SNP 1038175 1038175 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1836 SAMTools SNP 1038845 1038845 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0036%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1836 SAMTools SNP 1041307 1041307 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C18:21 scaffold1836 SAMTools SNP 1041879 1041879 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C129:99 scaffold1836 SAMTools SNP 1043133 1043133 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1836 SAMTools SNP 1045143 1045143 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold1836 SAMTools SNP 1045230 1045230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1836 SAMTools SNP 1054797 1054797 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1836 SAMTools SNP 1055708 1055708 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold1836 SAMTools SNP 1055876 1055876 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.011%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1836 SAMTools SNP 1065029 1065029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C12%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1836 SAMTools SNP 1065151 1065151 47.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold1836 SAMTools SNP 1065571 1065571 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.2e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C107:44 scaffold1836 SAMTools SNP 1071146 1071146 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1071168 1071168 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1071219 1071219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1836 SAMTools SNP 1071257 1071257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1836 SAMTools SNP 1071497 1071497 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1071517 1071517 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1836 SAMTools SNP 1072159 1072159 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C225:47 scaffold1836 SAMTools SNP 1072184 1072184 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1836 SAMTools SNP 1073832 1073832 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1836 SAMTools SNP 1075186 1075186 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1836 SAMTools SNP 1076867 1076867 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D49%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C236:99 scaffold1836 SAMTools SNP 1076878 1076878 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C5%3BMQ%3D49%3BFQ%3D92%3BPV4%3D1%2C0.44%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C236:99 scaffold1836 SAMTools SNP 1078105 1078105 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1836 SAMTools SNP 1078138 1078138 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1836 SAMTools SNP 1078331 1078331 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold1836 SAMTools SNP 1081218 1081218 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.14%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1836 SAMTools SNP 1081311 1081311 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1083036 1083036 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C54%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1836 SAMTools SNP 1085966 1085966 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1.8e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1836 SAMTools SNP 1086140 1086140 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1836 SAMTools SNP 1088020 1088020 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1836 SAMTools SNP 1088040 1088040 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1836 SAMTools SNP 1104198 1104198 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1836 SAMTools SNP 1104204 1104204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1836 SAMTools SNP 1104670 1104670 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1836 SAMTools SNP 1105414 1105414 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C3%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.088%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1836 SAMTools SNP 1105441 1105441 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.35%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1836 SAMTools SNP 1105713 1105713 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1836 SAMTools SNP 1105743 1105743 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1836 SAMTools SNP 1106405 1106405 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1836 SAMTools SNP 1107492 1107492 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C24%2C0:45 scaffold1836 SAMTools SNP 1109547 1109547 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C191:99 scaffold1836 SAMTools SNP 1111850 1111850 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1836 SAMTools SNP 1111874 1111874 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C32%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1836 SAMTools SNP 1112599 1112599 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold1836 SAMTools SNP 1112605 1112605 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.17%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C158:81 scaffold1836 SAMTools SNP 1112677 1112677 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C12%2C0:21 scaffold1836 SAMTools SNP 1114123 1114123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1836 SAMTools SNP 1114192 1114192 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold1836 SAMTools SNP 1114252 1114252 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1836 SAMTools SNP 1114604 1114604 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1836 SAMTools SNP 1114617 1114617 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1836 SAMTools SNP 1114640 1114640 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1836 SAMTools SNP 1114799 1114799 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold1836 SAMTools SNP 1114832 1114832 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.092%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1836 SAMTools SNP 1115078 1115078 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold1836 SAMTools SNP 1115403 1115403 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.013%2C3.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1836 SAMTools SNP 1115507 1115507 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0048%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1836 SAMTools SNP 1116185 1116185 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00022%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1836 SAMTools SNP 1116191 1116191 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1836 SAMTools SNP 1116221 1116221 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1836 SAMTools SNP 1116312 1116312 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C7%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D5.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1836 SAMTools SNP 1116560 1116560 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1836 SAMTools SNP 1117034 1117034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1836 SAMTools SNP 1117037 1117037 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0023%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1836 SAMTools SNP 1117073 1117073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1117844 1117844 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C148%2C0:99 scaffold1836 SAMTools SNP 1119291 1119291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C125%2C2%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.016%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1836 SAMTools SNP 1119655 1119655 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1836 SAMTools SNP 1119656 1119656 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1836 SAMTools SNP 1119743 1119743 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C54%2C15%2C28%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.41%2C4.5e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1836 SAMTools SNP 1120004 1120004 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D44%3BFQ%3D8.65%3BPV4%3D1%2C1.7e-16%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C182:36 scaffold1836 SAMTools SNP 1120064 1120064 58.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1838 SAMTools SNP 9002 9002 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1838 SAMTools SNP 9028 9028 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1838 SAMTools SNP 10073 10073 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1838 SAMTools SNP 10074 10074 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1838 SAMTools SNP 10128 10128 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1838 SAMTools SNP 11875 11875 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold1838 SAMTools SNP 12117 12117 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C33%2C0:61 scaffold1838 SAMTools SNP 13047 13047 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1838 SAMTools SNP 20949 20949 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C16%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C187%2C0:99 scaffold1838 SAMTools SNP 22390 22390 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1838 SAMTools SNP 22574 22574 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1838 SAMTools SNP 22599 22599 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1838 SAMTools SNP 22638 22638 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C156:76 scaffold1838 SAMTools SNP 23719 23719 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 24030 24030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 24272 24272 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C13%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1838 SAMTools SNP 24455 24455 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.35%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1838 SAMTools SNP 27626 27626 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1838 SAMTools SNP 27686 27686 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1838 SAMTools SNP 28491 28491 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1838 SAMTools SNP 28507 28507 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C18%2C0:33 scaffold1838 SAMTools SNP 35661 35661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 45180 45180 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.037%2C1.7e-17%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C166:88 scaffold1838 SAMTools SNP 45235 45235 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C5.5e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1838 SAMTools SNP 46279 46279 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C33%2C0:63 scaffold1838 SAMTools SNP 46323 46323 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 48964 48964 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1838 SAMTools SNP 48967 48967 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1838 SAMTools SNP 49345 49345 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1838 SAMTools SNP 49378 49378 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.07%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C218:99 scaffold1838 SAMTools SNP 49630 49630 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1838 SAMTools SNP 49644 49644 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.6%2C0.0045%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1838 SAMTools SNP 50213 50213 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 50228 50228 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1838 SAMTools SNP 50777 50777 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.2%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1838 SAMTools SNP 50807 50807 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.31%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1838 SAMTools SNP 50828 50828 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold1838 SAMTools SNP 50873 50873 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1838 SAMTools SNP 51392 51392 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C1%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.08%2C0.35%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1838 SAMTools SNP 52170 52170 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1838 SAMTools SNP 52245 52245 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1838 SAMTools SNP 53567 53567 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.25%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1838 SAMTools SNP 53598 53598 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.24%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1838 SAMTools SNP 54076 54076 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.22%2C0.42%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1838 SAMTools SNP 54438 54438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.14%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold1838 SAMTools SNP 54455 54455 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.41%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1838 SAMTools SNP 54478 54478 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold1838 SAMTools SNP 54493 54493 79.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C12%2C0:21 scaffold1838 SAMTools SNP 61427 61427 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 74016 74016 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1838 SAMTools SNP 77236 77236 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1838 SAMTools SNP 77988 77988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1838 SAMTools SNP 82474 82474 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1838 SAMTools SNP 82486 82486 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold1838 SAMTools SNP 82501 82501 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1838 SAMTools SNP 82503 82503 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1838 SAMTools SNP 84013 84013 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1838 SAMTools SNP 84948 84948 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1838 SAMTools SNP 84983 84983 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1838 SAMTools SNP 86678 86678 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.39%2C0.002%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1838 SAMTools SNP 87460 87460 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C124:33 scaffold1838 SAMTools SNP 87482 87482 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1838 SAMTools SNP 87742 87742 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold1838 SAMTools SNP 87763 87763 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold1838 SAMTools SNP 93483 93483 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C6%2C0%3BMQ%3D49%3BFQ%3D72%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1838 SAMTools SNP 95405 95405 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D581%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C3%2C378%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.69%2C0.0069%2C0.17%2C4.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 95454 95454 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C178%2C9%2C391%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00087%2C1%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 95758 95758 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 96269 96269 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C24%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 96299 96299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C15%2C60%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 98837 98837 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D48%3BFQ%3D15.1%3BPV4%3D1%2C0.0017%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1838 SAMTools SNP 102036 102036 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1838 SAMTools SNP 110483 110483 8.67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C24%2C0:29 scaffold1838 SAMTools SNP 111919 111919 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C42%2C0:81 scaffold1838 SAMTools SNP 119171 119171 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C11%2C133%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.00011%2C7.4e-07%2C1%2C1.5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1838 SAMTools SNP 123223 123223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1838 SAMTools SNP 123320 123320 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C27%2C12%2C10%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.8%2C1.3e-37%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1838 SAMTools SNP 123404 123404 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1838 SAMTools SNP 123686 123686 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 123922 123922 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C156%2C12%2C22%3BMQ%3D46%3BFQ%3D84%3BPV4%3D0.017%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1838 SAMTools SNP 123928 123928 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C74%2C9%2C113%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.16%2C0.05%2C0.47%2C3e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 142386 142386 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1838 SAMTools SNP 146876 146876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1838 SAMTools SNP 148090 148090 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1838 SAMTools SNP 148495 148495 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1838 SAMTools SNP 149639 149639 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold1838 SAMTools SNP 151919 151919 52.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold1838 SAMTools SNP 153020 153020 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1838 SAMTools SNP 154298 154298 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1838 SAMTools SNP 154440 154440 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.15%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 155111 155111 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1838 SAMTools SNP 155144 155144 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1838 SAMTools SNP 155245 155245 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1838 SAMTools SNP 155246 155246 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1838 SAMTools SNP 156729 156729 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1838 SAMTools SNP 156743 156743 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C38:41 scaffold1838 SAMTools SNP 160838 160838 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C40%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 164419 164419 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C31%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1838 SAMTools SNP 167066 167066 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C20%2C1%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.00068%2C2.8e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1838 SAMTools SNP 167675 167675 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.21%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1838 SAMTools SNP 177289 177289 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C3%2C8%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.086%2C5.1e-06%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1838 SAMTools SNP 177304 177304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1838 SAMTools SNP 177802 177802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C19%2C20%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 177811 177811 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 177829 177829 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C43%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00075%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 179693 179693 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.00038%2C1.4e-07%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1838 SAMTools SNP 187187 187187 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1838 SAMTools SNP 190248 190248 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 191007 191007 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1838 SAMTools SNP 192092 192092 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 192442 192442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1838 SAMTools SNP 202027 202027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1838 SAMTools SNP 202075 202075 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1838 SAMTools SNP 203532 203532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1838 SAMTools SNP 203634 203634 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1838 SAMTools SNP 203661 203661 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1838 SAMTools SNP 205972 205972 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 206087 206087 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C203:99 scaffold1838 SAMTools SNP 206092 206092 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C201:99 scaffold1838 SAMTools SNP 207051 207051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1838 SAMTools SNP 207072 207072 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1838 SAMTools SNP 208122 208122 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0033%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1838 SAMTools SNP 208151 208151 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1838 SAMTools SNP 208211 208211 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold1838 SAMTools SNP 208223 208223 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold1838 SAMTools SNP 209789 209789 41.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1838 SAMTools SNP 213373 213373 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 214016 214016 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1838 SAMTools SNP 214213 214213 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1838 SAMTools SNP 214361 214361 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1838 SAMTools SNP 216002 216002 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C65%2C1%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D0.00029%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold1838 SAMTools SNP 216019 216019 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C2%2C35%2C1%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.012%2C1%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C25:28 scaffold1838 SAMTools SNP 216039 216039 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold1838 SAMTools SNP 216109 216109 66.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C18%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.012%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C7%2C0:12 scaffold1838 SAMTools SNP 216118 216118 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1838 SAMTools SNP 216606 216606 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 216816 216816 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1838 SAMTools SNP 217162 217162 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1838 SAMTools SNP 217183 217183 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1838 SAMTools SNP 217399 217399 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.62%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1838 SAMTools SNP 217438 217438 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.66%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1838 SAMTools SNP 217589 217589 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1838 SAMTools SNP 217884 217884 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1838 SAMTools SNP 217890 217890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1838 SAMTools SNP 218141 218141 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.44%2C0.018%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C150:52 scaffold1838 SAMTools SNP 218530 218530 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1838 SAMTools SNP 218532 218532 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1838 SAMTools SNP 218907 218907 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1838 SAMTools SNP 218997 218997 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C69%2C0:99 scaffold1838 SAMTools SNP 219007 219007 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C31%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C154%2C0:99 scaffold1838 SAMTools SNP 219081 219081 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C50%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C178%2C0:99 scaffold1838 SAMTools SNP 220490 220490 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 220899 220899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 231714 231714 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold1838 SAMTools SNP 231735 231735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1838 SAMTools SNP 233028 233028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1838 SAMTools SNP 235343 235343 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold1838 SAMTools SNP 235344 235344 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1838 SAMTools SNP 235656 235656 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1838 SAMTools SNP 235956 235956 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1838 SAMTools SNP 242787 242787 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1838 SAMTools SNP 243996 243996 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.4%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold1838 SAMTools SNP 244023 244023 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1838 SAMTools SNP 244101 244101 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.62%2C4.1e-20%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1838 SAMTools SNP 244158 244158 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.033%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1838 SAMTools SNP 245019 245019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1838 SAMTools SNP 245586 245586 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1838 SAMTools SNP 245607 245607 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1838 SAMTools SNP 246723 246723 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1838 SAMTools SNP 246760 246760 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold1838 SAMTools SNP 246784 246784 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.25%2C9.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C155:88 scaffold1838 SAMTools SNP 246850 246850 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C27%2C0:51 scaffold1838 SAMTools SNP 249698 249698 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 287723 287723 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 287732 287732 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 288861 288861 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1838 SAMTools SNP 288887 288887 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 288896 288896 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1838 SAMTools SNP 288902 288902 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1838 SAMTools SNP 288905 288905 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1838 SAMTools SNP 289399 289399 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C167:99 scaffold1838 SAMTools SNP 289409 289409 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C136:63 scaffold1838 SAMTools SNP 289416 289416 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1838 SAMTools SNP 289552 289552 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1838 SAMTools SNP 291016 291016 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C170:99 scaffold1838 SAMTools SNP 291037 291037 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.08%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C246:99 scaffold1838 SAMTools SNP 291366 291366 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C247:99 scaffold1838 SAMTools SNP 291470 291470 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C7%2C28%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.036%2C0.0025%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1838 SAMTools SNP 292015 292015 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1838 SAMTools SNP 292053 292053 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1838 SAMTools SNP 292122 292122 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 292123 292123 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 296674 296674 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1838 SAMTools SNP 296676 296676 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1838 SAMTools SNP 297300 297300 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1838 SAMTools SNP 297598 297598 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C46%2C30%2C33%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0081%2C6.3e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1838 SAMTools SNP 297717 297717 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C48%2C0:93 scaffold1838 SAMTools SNP 297936 297936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1838 SAMTools SNP 298110 298110 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C99%2C0:99 scaffold1838 SAMTools SNP 298161 298161 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C132%2C0:99 scaffold1838 SAMTools SNP 298395 298395 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1838 SAMTools SNP 298396 298396 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.26%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1838 SAMTools SNP 298617 298617 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C59%2C4%2C48%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.045%2C6.7e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1838 SAMTools SNP 299499 299499 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1838 SAMTools SNP 299502 299502 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold1838 SAMTools SNP 300037 300037 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D14%2C1%2C7%2C151%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D1.2e-14%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C83%2C0:99 scaffold1838 SAMTools SNP 300146 300146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C24%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1838 SAMTools SNP 303299 303299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C59%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1838 SAMTools SNP 303314 303314 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C7%2C23%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0029%2C0.078%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1838 SAMTools SNP 303359 303359 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0052%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1838 SAMTools SNP 304319 304319 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1838 SAMTools SNP 304724 304724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.064%2C0.013%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1838 SAMTools SNP 304826 304826 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1838 SAMTools SNP 304829 304829 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1838 SAMTools SNP 305501 305501 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C20%2C36%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.056%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 305519 305519 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C12%2C6%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.14%2C0.014%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1838 SAMTools SNP 305531 305531 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C37%2C3%2C18%3BMQ%3D50%3BFQ%3D111%3BPV4%3D2.8e-06%2C0.19%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1838 SAMTools SNP 306258 306258 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C104%2C9%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.32%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 306288 306288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C89%2C6%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 306918 306918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C44%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C9.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 306933 306933 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C7%2C1%3BMQ%3D49%3BFQ%3D83%3BPV4%3D0.13%2C1%2C0.015%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1838 SAMTools SNP 307462 307462 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C1%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 307546 307546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.018%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1838 SAMTools SNP 308029 308029 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C67%2C0%2C19%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0062%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1838 SAMTools SNP 308030 308030 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C67%2C0%2C19%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0062%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1838 SAMTools SNP 313125 313125 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1838 SAMTools SNP 315034 315034 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D173%3BPV4%3D9.7e-08%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1838 SAMTools SNP 315560 315560 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C28%2C11%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C118:65 scaffold1838 SAMTools SNP 315617 315617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C6%2C21%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold1838 SAMTools SNP 316132 316132 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.17%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1838 SAMTools SNP 316221 316221 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1838 SAMTools SNP 316279 316279 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1838 SAMTools SNP 325496 325496 45.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold1838 SAMTools SNP 330878 330878 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.2e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C250:36 scaffold1838 SAMTools SNP 331004 331004 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C28%2C29%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 331238 331238 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C24%2C215%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 332324 332324 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C100%2C0%2C48%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.077%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1838 SAMTools SNP 332329 332329 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1838 SAMTools SNP 338068 338068 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C232:99 scaffold1838 SAMTools SNP 338693 338693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C31%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1838 SAMTools SNP 339578 339578 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.47%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C190:97 scaffold1838 SAMTools SNP 339587 339587 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1838 SAMTools SNP 339614 339614 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 339620 339620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1838 SAMTools SNP 342789 342789 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C116:33 scaffold1838 SAMTools SNP 345426 345426 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1838 SAMTools SNP 345471 345471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 345792 345792 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1838 SAMTools SNP 345795 345795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1838 SAMTools SNP 346107 346107 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.6%2C8.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1838 SAMTools SNP 346513 346513 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C54%2C0:99 scaffold1838 SAMTools SNP 346779 346779 86.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold1838 SAMTools SNP 346812 346812 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C130:77 scaffold1838 SAMTools SNP 347150 347150 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1838 SAMTools SNP 347210 347210 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1838 SAMTools SNP 347345 347345 48.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold1838 SAMTools SNP 347405 347405 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 347719 347719 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 348555 348555 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C36%2C0:69 scaffold1838 SAMTools SNP 348567 348567 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1838 SAMTools SNP 348693 348693 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1838 SAMTools SNP 348705 348705 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1838 SAMTools SNP 349421 349421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold1838 SAMTools SNP 349442 349442 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C24%2C0:45 scaffold1838 SAMTools SNP 349538 349538 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C152:61 scaffold1838 SAMTools SNP 351447 351447 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1838 SAMTools SNP 356028 356028 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1838 SAMTools SNP 356050 356050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1838 SAMTools SNP 357956 357956 30.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1838 SAMTools SNP 361471 361471 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1838 SAMTools SNP 363384 363384 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1838 SAMTools SNP 365303 365303 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold1838 SAMTools SNP 366054 366054 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1838 SAMTools SNP 367234 367234 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold1838 SAMTools SNP 369173 369173 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D47%3BFQ%3D80%3BPV4%3D0.43%2C1%2C0.18%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C160:99 scaffold1838 SAMTools SNP 369496 369496 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C11%3BMQ%3D43%3BFQ%3D159%3BPV4%3D0.033%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1838 SAMTools SNP 370382 370382 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1838 SAMTools SNP 370383 370383 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1838 SAMTools SNP 370449 370449 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1838 SAMTools SNP 370511 370511 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1838 SAMTools SNP 370625 370625 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C0%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1838 SAMTools SNP 370644 370644 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1838 SAMTools SNP 371015 371015 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.39%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1838 SAMTools SNP 371021 371021 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1838 SAMTools SNP 372907 372907 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1838 SAMTools SNP 373718 373718 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1838 SAMTools SNP 383377 383377 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1838 SAMTools SNP 384443 384443 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1839 SAMTools SNP 1644 1644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1839 SAMTools SNP 7642 7642 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C41%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C175%2C0:99 scaffold1839 SAMTools SNP 8006 8006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1839 SAMTools SNP 8028 8028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1839 SAMTools SNP 9879 9879 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C7.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C215:99 scaffold1839 SAMTools SNP 14413 14413 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1839 SAMTools SNP 14889 14889 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1839 SAMTools SNP 25311 25311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1839 SAMTools SNP 25314 25314 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C167:74 scaffold1839 SAMTools SNP 25320 25320 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C185:99 scaffold1839 SAMTools SNP 25321 25321 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.57%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C187:99 scaffold1839 SAMTools SNP 28701 28701 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1839 SAMTools SNP 28718 28718 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold1839 SAMTools SNP 28742 28742 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1839 SAMTools SNP 28750 28750 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1839 SAMTools SNP 30593 30593 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1839 SAMTools SNP 36451 36451 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1839 SAMTools SNP 36483 36483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1839 SAMTools SNP 46408 46408 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C102%2C0:99 scaffold1839 SAMTools SNP 46539 46539 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1839 SAMTools SNP 46837 46837 18.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold1839 SAMTools SNP 46909 46909 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C6.5e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold1839 SAMTools SNP 47097 47097 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C5%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1839 SAMTools SNP 52501 52501 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1839 SAMTools SNP 53273 53273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 1344 1344 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 1447 1447 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C39%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C223%2C0:99 scaffold184 SAMTools SNP 2625 2625 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C54%2C0:99 scaffold184 SAMTools SNP 2691 2691 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.038%2C6.4e-22%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C157:99 scaffold184 SAMTools SNP 2763 2763 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 4182 4182 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C10%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 4203 4203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold184 SAMTools SNP 4251 4251 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold184 SAMTools SNP 4284 4284 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C6%2C16%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.42%2C1.9e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold184 SAMTools SNP 5157 5157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0049%2C1.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold184 SAMTools SNP 5184 5184 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C11%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0007%2C4.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold184 SAMTools SNP 5428 5428 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C39%2C0:75 scaffold184 SAMTools SNP 5466 5466 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 5506 5506 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold184 SAMTools SNP 5523 5523 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold184 SAMTools SNP 6123 6123 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C54%2C0:99 scaffold184 SAMTools SNP 6303 6303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold184 SAMTools SNP 15560 15560 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C9%2C7%3BMQ%3D25%3BFQ%3D-40%3BPV4%3D0.054%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C13%2C0:23 scaffold184 SAMTools SNP 15921 15921 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C11%2C10%3BMQ%3D37%3BFQ%3D175%3BPV4%3D0.53%2C0.47%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C210:99 scaffold184 SAMTools SNP 15936 15936 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C12%2C10%3BMQ%3D37%3BFQ%3D179%3BPV4%3D0.76%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C209:99 scaffold184 SAMTools SNP 16710 16710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold184 SAMTools SNP 16752 16752 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 16755 16755 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold184 SAMTools SNP 17304 17304 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C17%2C1%3BMQ%3D49%3BFQ%3D207%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C237:99 scaffold184 SAMTools SNP 18229 18229 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D37%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold184 SAMTools SNP 18283 18283 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C2%3BMQ%3D44%3BFQ%3D9.53%3BPV4%3D1%2C0.011%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold184 SAMTools SNP 18728 18728 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D23%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C57%2C0:99 scaffold184 SAMTools SNP 19461 19461 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C3%3BMQ%3D44%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold184 SAMTools SNP 20016 20016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C26%2C89%2C40%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 20830 20830 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold184 SAMTools SNP 22996 22996 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C11%2C0%2C6%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D0.0028%2C1%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold184 SAMTools SNP 23020 23020 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C1%2C14%3BMQ%3D46%3BFQ%3D198%3BPV4%3D0.0031%2C0.31%2C0.26%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold184 SAMTools SNP 24447 24447 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.089%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 24479 24479 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C24%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold184 SAMTools SNP 24516 24516 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold184 SAMTools SNP 53523 53523 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold184 SAMTools SNP 68493 68493 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 69243 69243 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 69274 69274 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 73207 73207 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold184 SAMTools SNP 106135 106135 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 106276 106276 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold184 SAMTools SNP 106341 106341 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 106484 106484 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 158078 158078 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 158414 158414 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold184 SAMTools SNP 159752 159752 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 172109 172109 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold184 SAMTools SNP 172451 172451 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold184 SAMTools SNP 186334 186334 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.5e-17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C184:28 scaffold184 SAMTools SNP 186768 186768 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C181:99 scaffold184 SAMTools SNP 188883 188883 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold184 SAMTools SNP 188934 188934 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 206190 206190 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 250467 250467 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 251075 251075 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 253670 253670 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 266921 266921 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold184 SAMTools SNP 266975 266975 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C84%2C1%2C34%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.00019%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold184 SAMTools SNP 267005 267005 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C86%2C1%2C23%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold184 SAMTools SNP 267545 267545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 267758 267758 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold184 SAMTools SNP 267767 267767 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.49%2C0.2%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold184 SAMTools SNP 267823 267823 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.16%2C7e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold184 SAMTools SNP 267899 267899 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C6%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold184 SAMTools SNP 268563 268563 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold184 SAMTools SNP 268632 268632 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold184 SAMTools SNP 269075 269075 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold184 SAMTools SNP 269132 269132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold184 SAMTools SNP 272889 272889 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold184 SAMTools SNP 291806 291806 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.27%2C1%2C1%2C4.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold184 SAMTools SNP 292439 292439 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C224:99 scaffold184 SAMTools SNP 293304 293304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold184 SAMTools SNP 293328 293328 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold184 SAMTools SNP 293355 293355 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C174:99 scaffold184 SAMTools SNP 299705 299705 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D40%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C33%2C0:63 scaffold184 SAMTools SNP 300121 300121 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.064%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold184 SAMTools SNP 300169 300169 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C227:99 scaffold184 SAMTools SNP 300189 300189 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C0.002%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold184 SAMTools SNP 301397 301397 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold184 SAMTools SNP 302381 302381 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold184 SAMTools SNP 302411 302411 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0210%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold184 SAMTools SNP 303033 303033 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold184 SAMTools SNP 311510 311510 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold184 SAMTools SNP 318108 318108 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 318153 318153 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 332918 332918 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 354391 354391 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C2%3BMQ%3D45%3BFQ%3D-47%3BPV4%3D0.3%2C9.2e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C20%2C0:37 scaffold184 SAMTools SNP 368051 368051 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 368079 368079 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 368290 368290 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold184 SAMTools SNP 374432 374432 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold184 SAMTools SNP 406735 406735 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold184 SAMTools SNP 406843 406843 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C54%2C0:99 scaffold184 SAMTools SNP 407266 407266 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold184 SAMTools SNP 407564 407564 16.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1840 SAMTools SNP 4970 4970 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1840 SAMTools SNP 4985 4985 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1840 SAMTools SNP 5070 5070 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1840 SAMTools SNP 5105 5105 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1840 SAMTools SNP 11733 11733 23.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1840 SAMTools SNP 11758 11758 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1840 SAMTools SNP 11821 11821 27.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold1840 SAMTools SNP 15205 15205 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1840 SAMTools SNP 15332 15332 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1840 SAMTools SNP 28226 28226 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1840 SAMTools SNP 28379 28379 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C14%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1840 SAMTools SNP 29355 29355 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1840 SAMTools SNP 30180 30180 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00014%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C241:99 scaffold1840 SAMTools SNP 30914 30914 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.087%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C228:30 scaffold1840 SAMTools SNP 30962 30962 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C12%2C11%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.009%2C6.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1840 SAMTools SNP 31064 31064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1840 SAMTools SNP 32027 32027 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1840 SAMTools SNP 32051 32051 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.11%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1840 SAMTools SNP 32120 32120 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1840 SAMTools SNP 32129 32129 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1840 SAMTools SNP 32667 32667 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C12%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1.5e-16%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C214:99 scaffold1840 SAMTools SNP 32691 32691 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.0098%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C206:93 scaffold1840 SAMTools SNP 33179 33179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1840 SAMTools SNP 33191 33191 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold1840 SAMTools SNP 33584 33584 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1840 SAMTools SNP 33590 33590 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1840 SAMTools SNP 33629 33629 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.51%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold1840 SAMTools SNP 33641 33641 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1840 SAMTools SNP 33674 33674 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C4%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1840 SAMTools SNP 34293 34293 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1840 SAMTools SNP 35096 35096 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C114%2C0:99 scaffold1840 SAMTools SNP 35132 35132 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C24%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.54%2C5.3e-15%2C0.18%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1840 SAMTools SNP 35796 35796 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1840 SAMTools SNP 36344 36344 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1840 SAMTools SNP 36389 36389 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1840 SAMTools SNP 39160 39160 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1840 SAMTools SNP 104387 104387 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1841 SAMTools SNP 4562 4562 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1841 SAMTools SNP 4563 4563 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1841 SAMTools SNP 4564 4564 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1841 SAMTools SNP 12081 12081 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1841 SAMTools SNP 12085 12085 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1841 SAMTools SNP 15395 15395 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1841 SAMTools SNP 15404 15404 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1841 SAMTools SNP 15415 15415 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1841 SAMTools SNP 15428 15428 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C223:80 scaffold1841 SAMTools SNP 16346 16346 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D73%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1841 SAMTools SNP 16376 16376 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C69%2C0%2C8%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C184:41 scaffold1841 SAMTools SNP 16383 16383 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C72%2C0%2C9%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C185:46 scaffold1841 SAMTools SNP 16721 16721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1841 SAMTools SNP 18131 18131 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1841 SAMTools SNP 18149 18149 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold1841 SAMTools SNP 23468 23468 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1841 SAMTools SNP 24368 24368 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1841 SAMTools SNP 41395 41395 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1841 SAMTools SNP 49984 49984 22.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1841 SAMTools SNP 58722 58722 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C182:99 scaffold1841 SAMTools SNP 61804 61804 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C2%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.6%2C0.46%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1841 SAMTools SNP 62142 62142 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold1841 SAMTools SNP 63364 63364 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1841 SAMTools SNP 63463 63463 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold1841 SAMTools SNP 63705 63705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C3%3BMQ%3D48%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1841 SAMTools SNP 63710 63710 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C1%3BMQ%3D45%3BFQ%3D173%3BPV4%3D0.19%2C0.12%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1841 SAMTools SNP 64527 64527 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold1841 SAMTools SNP 64543 64543 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1841 SAMTools SNP 64698 64698 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1841 SAMTools SNP 65232 65232 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C54%2C0:99 scaffold1841 SAMTools SNP 65426 65426 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C249:99 scaffold1841 SAMTools SNP 65916 65916 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C1%3BMQ%3D28%3BFQ%3D3.55%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C28:31 scaffold1841 SAMTools SNP 65967 65967 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C12%3BMQ%3D32%3BFQ%3D-5.45%3BPV4%3D0.2%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold1841 SAMTools SNP 66560 66560 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C3%2C13%3BMQ%3D43%3BFQ%3D84%3BPV4%3D1%2C1%2C1.6e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1841 SAMTools SNP 66697 66697 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C5%3BMQ%3D43%3BFQ%3D96%3BPV4%3D1%2C1%2C0.33%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C185:99 scaffold1841 SAMTools SNP 68026 68026 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C5%3BMQ%3D48%3BFQ%3D127%3BPV4%3D0.5%2C1%2C0.25%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C238:99 scaffold1841 SAMTools SNP 68980 68980 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold1841 SAMTools SNP 70941 70941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1841 SAMTools SNP 72073 72073 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1841 SAMTools SNP 72099 72099 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1841 SAMTools SNP 73661 73661 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1841 SAMTools SNP 76964 76964 119 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C42%2C0%2C144%2C22%2C141:81 scaffold1841 SAMTools SNP 78193 78193 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1841 SAMTools SNP 79382 79382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C22%2C61%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 79416 79416 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 79708 79708 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 81057 81057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 82336 82336 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C99%2C1%2C29%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.00054%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1841 SAMTools SNP 82337 82337 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C97%2C1%2C31%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1841 SAMTools SNP 82565 82565 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 82853 82853 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C0%2C27%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.00074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold1841 SAMTools SNP 83020 83020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C53%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1841 SAMTools SNP 83048 83048 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.55%2C0.47%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1841 SAMTools SNP 83260 83260 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C86:89 scaffold1841 SAMTools SNP 84561 84561 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C43%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 84585 84585 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 84684 84684 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1841 SAMTools SNP 85156 85156 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1841 SAMTools SNP 85258 85258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1841 SAMTools SNP 85924 85924 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C27%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1841 SAMTools SNP 86333 86333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1841 SAMTools SNP 86354 86354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 86402 86402 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C4%2C5%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.45%2C0.011%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1841 SAMTools SNP 86462 86462 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C33%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1841 SAMTools SNP 86891 86891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D227%2C126%2C88%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-08%2C2.1e-131%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 87921 87921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 89162 89162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 89436 89436 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 90129 90129 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.6%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1841 SAMTools SNP 90680 90680 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 95238 95238 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 100670 100670 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C63%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold1841 SAMTools SNP 101478 101478 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C35:38 scaffold1841 SAMTools SNP 101698 101698 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C153:34 scaffold1841 SAMTools SNP 102017 102017 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1841 SAMTools SNP 102381 102381 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.12%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold1841 SAMTools SNP 102759 102759 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1841 SAMTools SNP 102816 102816 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1841 SAMTools SNP 103329 103329 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1841 SAMTools SNP 103759 103759 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1841 SAMTools SNP 103760 103760 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1841 SAMTools SNP 103823 103823 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1841 SAMTools SNP 103852 103852 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1841 SAMTools SNP 105964 105964 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold1841 SAMTools SNP 114704 114704 63.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold1841 SAMTools SNP 115566 115566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C7%2C42%3BMQ%3D49%3BFQ%3D189%3BPV4%3D0.37%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1841 SAMTools SNP 117070 117070 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1841 SAMTools SNP 117147 117147 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1841 SAMTools SNP 118819 118819 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C37%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold1841 SAMTools SNP 118894 118894 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.12%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1841 SAMTools SNP 118949 118949 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.14%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1841 SAMTools SNP 119600 119600 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C12%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 119633 119633 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.34%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 119729 119729 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.29%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 119759 119759 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C165%2C24%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.17%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold1841 SAMTools SNP 120236 120236 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C42%2C60%2C181%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.4e-05%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 121167 121167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C39%2C56%2C149%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 121401 121401 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C16%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.0032%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 121477 121477 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.12%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1841 SAMTools SNP 122132 122132 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1841 SAMTools SNP 122484 122484 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1841 SAMTools SNP 122744 122744 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1841 SAMTools SNP 122890 122890 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1841 SAMTools SNP 123083 123083 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C175%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 123362 123362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C40%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 123799 123799 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C21%2C60%2C5%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.64%2C4.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1841 SAMTools SNP 124284 124284 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.49%2C1%2C9.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1841 SAMTools SNP 126141 126141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1841 SAMTools SNP 126165 126165 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1841 SAMTools SNP 126253 126253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1841 SAMTools SNP 126979 126979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1841 SAMTools SNP 127200 127200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C7%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1841 SAMTools SNP 128220 128220 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C35%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1841 SAMTools SNP 128526 128526 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C31%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1841 SAMTools SNP 135286 135286 31.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold1841 SAMTools SNP 135965 135965 153 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C15%2C0:27 scaffold1841 SAMTools SNP 141263 141263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1841 SAMTools SNP 141889 141889 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold1841 SAMTools SNP 151700 151700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 152484 152484 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C13%2C17%3BMQ%3D38%3BFQ%3D93%3BPV4%3D0.71%2C0.45%2C0.3%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C120:99 scaffold1841 SAMTools SNP 152506 152506 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D29%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C99%2C0:99 scaffold1841 SAMTools SNP 154583 154583 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C6%2C0%3BMQ%3D41%3BFQ%3D52%3BPV4%3D0.082%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C213:82 scaffold1841 SAMTools SNP 154592 154592 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C8%2C1%3BMQ%3D41%3BFQ%3D133%3BPV4%3D0.14%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C222:99 scaffold1841 SAMTools SNP 155520 155520 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C4%2C1%3BMQ%3D46%3BFQ%3D96%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1841 SAMTools SNP 155613 155613 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1841 SAMTools SNP 155661 155661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 156179 156179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1841 SAMTools SNP 156702 156702 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.51%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1841 SAMTools SNP 157291 157291 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1841 SAMTools SNP 158369 158369 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1841 SAMTools SNP 158572 158572 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1843 SAMTools SNP 3373 3373 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 3394 3394 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 6880 6880 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C69%2C0:99 scaffold1843 SAMTools SNP 9394 9394 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1843 SAMTools SNP 11065 11065 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1843 SAMTools SNP 11083 11083 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1843 SAMTools SNP 11094 11094 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0023%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold1843 SAMTools SNP 12235 12235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C34%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C6.9e-27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 12261 12261 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1843 SAMTools SNP 12328 12328 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C6%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.7e-05%2C0.0046%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 13404 13404 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold1843 SAMTools SNP 13674 13674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.29%2C0.39%2C1%2C6.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold1843 SAMTools SNP 13702 13702 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C82:85 scaffold1843 SAMTools SNP 13738 13738 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1843 SAMTools SNP 14347 14347 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1843 SAMTools SNP 14443 14443 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1843 SAMTools SNP 15526 15526 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1843 SAMTools SNP 15635 15635 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.061%2C0.0001%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C244:39 scaffold1843 SAMTools SNP 15746 15746 176 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C63%2C0%2C201%2C42%2C198:99 scaffold1843 SAMTools SNP 16589 16589 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1843 SAMTools SNP 20457 20457 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1843 SAMTools SNP 20521 20521 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1843 SAMTools SNP 21008 21008 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0022%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C143:42 scaffold1843 SAMTools SNP 21178 21178 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C11%2C15%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.62%2C1.9e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1843 SAMTools SNP 21620 21620 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1843 SAMTools SNP 21800 21800 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C129:86 scaffold1843 SAMTools SNP 24307 24307 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1843 SAMTools SNP 24335 24335 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1843 SAMTools SNP 24801 24801 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1843 SAMTools SNP 25555 25555 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C14%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1843 SAMTools SNP 25564 25564 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0066%2C0.22%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1843 SAMTools SNP 28212 28212 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1843 SAMTools SNP 28432 28432 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 28465 28465 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 28633 28633 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold1843 SAMTools SNP 29104 29104 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C42%2C0:80 scaffold1843 SAMTools SNP 29222 29222 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold1843 SAMTools SNP 31665 31665 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1.5e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 31802 31802 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0081%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1843 SAMTools SNP 34516 34516 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1843 SAMTools SNP 34522 34522 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1843 SAMTools SNP 35117 35117 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1843 SAMTools SNP 35133 35133 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1843 SAMTools SNP 35671 35671 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C7%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C178%2C0:99 scaffold1843 SAMTools SNP 35765 35765 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C44%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.084%2C7.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C55%2C0:99 scaffold1843 SAMTools SNP 36086 36086 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold1843 SAMTools SNP 36749 36749 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0088%2C3.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1843 SAMTools SNP 37163 37163 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C66%2C0:99 scaffold1843 SAMTools SNP 37817 37817 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C19%2C21%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.48%2C1.1e-71%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1843 SAMTools SNP 37874 37874 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C2%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.063%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1843 SAMTools SNP 37918 37918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C18%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.12%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1843 SAMTools SNP 39896 39896 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C33%2C0:63 scaffold1843 SAMTools SNP 40426 40426 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C30%2C0:52 scaffold1843 SAMTools SNP 40965 40965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.02%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 41487 41487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold1843 SAMTools SNP 50214 50214 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1843 SAMTools SNP 52298 52298 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.035%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1843 SAMTools SNP 52313 52313 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1843 SAMTools SNP 52315 52315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1843 SAMTools SNP 54882 54882 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1843 SAMTools SNP 54883 54883 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1843 SAMTools SNP 123024 123024 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1843 SAMTools SNP 124127 124127 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold1843 SAMTools SNP 125062 125062 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1843 SAMTools SNP 125104 125104 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1843 SAMTools SNP 127903 127903 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 143170 143170 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 143188 143188 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 156623 156623 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C228:88 scaffold1843 SAMTools SNP 156955 156955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1843 SAMTools SNP 157023 157023 50.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold1843 SAMTools SNP 157054 157054 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C18%2C0:33 scaffold1843 SAMTools SNP 157287 157287 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold1843 SAMTools SNP 157337 157337 56.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1843 SAMTools SNP 158192 158192 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1843 SAMTools SNP 161346 161346 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 161350 161350 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 173477 173477 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 173514 173514 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.013%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1843 SAMTools SNP 173558 173558 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 175282 175282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1843 SAMTools SNP 177158 177158 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C6%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.28%2C4.9e-16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1843 SAMTools SNP 178584 178584 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.55%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1843 SAMTools SNP 178586 178586 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.22%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1843 SAMTools SNP 179404 179404 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C32%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0033%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C238:99 scaffold1843 SAMTools SNP 179563 179563 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C140:51 scaffold1843 SAMTools SNP 179581 179581 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C3%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1843 SAMTools SNP 180391 180391 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C28%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0002%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold1843 SAMTools SNP 180463 180463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1843 SAMTools SNP 190374 190374 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C31%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1843 SAMTools SNP 190390 190390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C36%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1843 SAMTools SNP 190735 190735 43.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C3.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C4%2C0:7 scaffold1843 SAMTools SNP 190773 190773 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C90%2C0:99 scaffold1843 SAMTools SNP 190877 190877 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C18%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 190899 190899 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 192779 192779 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 192797 192797 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 194300 194300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D191%2C7%2C140%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C4.7e-95%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1843 SAMTools SNP 194915 194915 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C8%2C131%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.41%2C8.7e-112%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1843 SAMTools SNP 195041 195041 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1843 SAMTools SNP 195159 195159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C70%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1843 SAMTools SNP 195237 195237 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1843 SAMTools SNP 195285 195285 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold1843 SAMTools SNP 195455 195455 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1843 SAMTools SNP 195566 195566 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1843 SAMTools SNP 195688 195688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1843 SAMTools SNP 195882 195882 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1843 SAMTools SNP 196055 196055 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1843 SAMTools SNP 196174 196174 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1843 SAMTools SNP 196184 196184 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1843 SAMTools SNP 234277 234277 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C39%2C0:74 scaffold1843 SAMTools SNP 234349 234349 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C232:99 scaffold1843 SAMTools SNP 234902 234902 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold1843 SAMTools SNP 234928 234928 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.045%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C110:70 scaffold1843 SAMTools SNP 235503 235503 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1843 SAMTools SNP 237952 237952 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1843 SAMTools SNP 238307 238307 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1843 SAMTools SNP 249247 249247 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1843 SAMTools SNP 249685 249685 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1844 SAMTools SNP 125 125 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1844 SAMTools SNP 196 196 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C220:49 scaffold1844 SAMTools SNP 921 921 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1844 SAMTools SNP 1265 1265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C15%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold1844 SAMTools SNP 2158 2158 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1844 SAMTools SNP 3140 3140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1844 SAMTools SNP 3155 3155 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1844 SAMTools SNP 5367 5367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1844 SAMTools SNP 5445 5445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 5610 5610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1844 SAMTools SNP 5855 5855 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1844 SAMTools SNP 6300 6300 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0045%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 8157 8157 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1844 SAMTools SNP 8878 8878 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C9%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D3.9e-07%2C9.6e-14%2C1%2C8.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1844 SAMTools SNP 14549 14549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C66%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 14740 14740 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.28%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1844 SAMTools SNP 16267 16267 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1844 SAMTools SNP 16363 16363 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1844 SAMTools SNP 16767 16767 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C6%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1844 SAMTools SNP 16813 16813 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1844 SAMTools SNP 16824 16824 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C1%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.42%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1844 SAMTools SNP 18180 18180 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C9%2C22%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C4.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1844 SAMTools SNP 21999 21999 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1844 SAMTools SNP 22883 22883 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1844 SAMTools SNP 23655 23655 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1844 SAMTools SNP 23857 23857 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1844 SAMTools SNP 28324 28324 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C99%2C51%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C2.8e-140%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 28597 28597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C252%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1844 SAMTools SNP 30160 30160 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1844 SAMTools SNP 32665 32665 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1844 SAMTools SNP 33871 33871 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1844 SAMTools SNP 42940 42940 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 42967 42967 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C0%2C19%3BMQ%3D50%3BFQ%3D179%3BPV4%3D5.9e-05%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1844 SAMTools SNP 43501 43501 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C49%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C2e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 43522 43522 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C8%2C22%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C6.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1844 SAMTools SNP 43786 43786 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C39%2C0:75 scaffold1844 SAMTools SNP 43819 43819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 43927 43927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1844 SAMTools SNP 43938 43938 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 43982 43982 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C15%2C54%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 45636 45636 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1844 SAMTools SNP 45641 45641 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1844 SAMTools SNP 46862 46862 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.7%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold1844 SAMTools SNP 47281 47281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C20%2C93%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-08%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 55221 55221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C4%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 55275 55275 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C77%2C3%2C21%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.69%2C0.16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1844 SAMTools SNP 55286 55286 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0064%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1844 SAMTools SNP 55287 55287 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.052%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1844 SAMTools SNP 55326 55326 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.26%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1844 SAMTools SNP 55621 55621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 55898 55898 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1844 SAMTools SNP 56626 56626 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1844 SAMTools SNP 67321 67321 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D21%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C51%2C0:99 scaffold1844 SAMTools SNP 67956 67956 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1844 SAMTools SNP 120433 120433 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1844 SAMTools SNP 120762 120762 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C0.35%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1844 SAMTools SNP 120778 120778 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1844 SAMTools SNP 120971 120971 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1844 SAMTools SNP 122204 122204 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1844 SAMTools SNP 131745 131745 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1844 SAMTools SNP 131752 131752 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold1844 SAMTools SNP 131952 131952 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1844 SAMTools SNP 156121 156121 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C99:72 scaffold1844 SAMTools SNP 156131 156131 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C187:99 scaffold1845 SAMTools SNP 65492 65492 9.49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1845 SAMTools SNP 66378 66378 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C45%2C0:87 scaffold1845 SAMTools SNP 80882 80882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 82672 82672 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1845 SAMTools SNP 82733 82733 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.52%2C1.6e-10%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C158:49 scaffold1845 SAMTools SNP 83631 83631 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 83724 83724 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 83732 83732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 84803 84803 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1845 SAMTools SNP 84921 84921 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.26%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C37:28 scaffold1845 SAMTools SNP 84930 84930 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 84951 84951 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold1845 SAMTools SNP 85640 85640 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1845 SAMTools SNP 110449 110449 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1845 SAMTools SNP 111195 111195 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1845 SAMTools SNP 114992 114992 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D3%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C84%2C0:63 scaffold1845 SAMTools SNP 115196 115196 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 115899 115899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1845 SAMTools SNP 115971 115971 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1845 SAMTools SNP 116025 116025 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1845 SAMTools SNP 116031 116031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1845 SAMTools SNP 116717 116717 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1845 SAMTools SNP 116807 116807 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.36%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C17:20 scaffold1845 SAMTools SNP 116885 116885 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C119:99 scaffold1845 SAMTools SNP 116888 116888 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1845 SAMTools SNP 117228 117228 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1845 SAMTools SNP 117303 117303 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1845 SAMTools SNP 118338 118338 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 119799 119799 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D37%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C27%2C0:51 scaffold1845 SAMTools SNP 119850 119850 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D24%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C39%2C0:75 scaffold1845 SAMTools SNP 120211 120211 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1845 SAMTools SNP 122446 122446 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 127972 127972 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D34%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1845 SAMTools SNP 128089 128089 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D32%3BFQ%3D7.64%3BPV4%3D1%2C0.0091%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold1845 SAMTools SNP 130311 130311 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1845 SAMTools SNP 130316 130316 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold1845 SAMTools SNP 152107 152107 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D48%3BFQ%3D20.1%3BPV4%3D1%2C5.6e-13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C97:50 scaffold1845 SAMTools SNP 159306 159306 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1845 SAMTools SNP 160001 160001 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1845 SAMTools SNP 170996 170996 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1845 SAMTools SNP 190089 190089 14.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1845 SAMTools SNP 202675 202675 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.00018%2C7.4e-16%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C200:66 scaffold1845 SAMTools SNP 203158 203158 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7.8e-15%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C217:30 scaffold1845 SAMTools SNP 203263 203263 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C86:89 scaffold1845 SAMTools SNP 207876 207876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C20%3BMQ%3D47%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1845 SAMTools SNP 207894 207894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C41%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1845 SAMTools SNP 208305 208305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C55%3BMQ%3D45%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1845 SAMTools SNP 208374 208374 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1845 SAMTools SNP 208857 208857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0036%2C0.46%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1845 SAMTools SNP 208869 208869 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C16%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1845 SAMTools SNP 209554 209554 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.011%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C230:99 scaffold1845 SAMTools SNP 210102 210102 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1845 SAMTools SNP 210120 210120 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1845 SAMTools SNP 210610 210610 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1845 SAMTools SNP 210619 210619 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1845 SAMTools SNP 210893 210893 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold1845 SAMTools SNP 211346 211346 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C0.0073%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1845 SAMTools SNP 211355 211355 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.15%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1845 SAMTools SNP 211763 211763 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0083%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1845 SAMTools SNP 211826 211826 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.36%2C0.1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1845 SAMTools SNP 211835 211835 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C126:93 scaffold1845 SAMTools SNP 212519 212519 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1845 SAMTools SNP 212955 212955 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1845 SAMTools SNP 212958 212958 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1845 SAMTools SNP 213423 213423 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1845 SAMTools SNP 213424 213424 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1845 SAMTools SNP 213480 213480 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1845 SAMTools SNP 214088 214088 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 215247 215247 3.56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.503%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D48%3BFQ%3D-8.86%3BPV4%3D0.15%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C19:25 scaffold1845 SAMTools SNP 217413 217413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1845 SAMTools SNP 217464 217464 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1845 SAMTools SNP 221648 221648 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1845 SAMTools SNP 221677 221677 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.037%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C81:62 scaffold1845 SAMTools SNP 221756 221756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C4%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1845 SAMTools SNP 222102 222102 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C20%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D8.4e-06%2C1%2C1%2C3.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1845 SAMTools SNP 222197 222197 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1845 SAMTools SNP 222201 222201 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C21%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.38%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1845 SAMTools SNP 222228 222228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C26%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1845 SAMTools SNP 222811 222811 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C91%2C35%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-08%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1845 SAMTools SNP 222869 222869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1845 SAMTools SNP 229606 229606 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1845 SAMTools SNP 235712 235712 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.18%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C253:44 scaffold1845 SAMTools SNP 236198 236198 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1845 SAMTools SNP 242142 242142 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1845 SAMTools SNP 242148 242148 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1845 SAMTools SNP 242184 242184 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1845 SAMTools SNP 242301 242301 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1845 SAMTools SNP 242322 242322 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1845 SAMTools SNP 242506 242506 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1845 SAMTools SNP 243052 243052 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1845 SAMTools SNP 243417 243417 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1845 SAMTools SNP 244502 244502 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 244533 244533 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1845 SAMTools SNP 266043 266043 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D763%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D533%2C0%2C230%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1.7e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C248:70 scaffold1845 SAMTools SNP 271881 271881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3485%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1095%2C1565%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1845 SAMTools SNP 271947 271947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7282%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C5%2C3610%2C3536%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.12%2C1.3e-71%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1845 SAMTools SNP 272001 272001 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4962%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D582%2C2745%2C16%2C1039%3BMQ%3D50%3BFQ%3D65%3BPV4%3D6.7e-54%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1845 SAMTools SNP 272010 272010 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4829%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1026%2C3076%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1845 SAMTools SNP 272478 272478 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2139%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1298%2C1%2C810%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1845 SAMTools SNP 274739 274739 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.35%2C7.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C242:62 scaffold1845 SAMTools SNP 276309 276309 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold1845 SAMTools SNP 276327 276327 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1845 SAMTools SNP 276347 276347 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1845 SAMTools SNP 276813 276813 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1845 SAMTools SNP 276828 276828 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1845 SAMTools SNP 276897 276897 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1845 SAMTools SNP 277579 277579 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0021%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C169:39 scaffold1845 SAMTools SNP 277642 277642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1845 SAMTools SNP 278123 278123 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1845 SAMTools SNP 278753 278753 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1845 SAMTools SNP 278761 278761 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1845 SAMTools SNP 278831 278831 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold1845 SAMTools SNP 279295 279295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1845 SAMTools SNP 279307 279307 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C33%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1845 SAMTools SNP 280178 280178 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1845 SAMTools SNP 280406 280406 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1846 SAMTools SNP 1909 1909 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1846 SAMTools SNP 33862 33862 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1846 SAMTools SNP 48657 48657 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1846 SAMTools SNP 48705 48705 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1846 SAMTools SNP 49620 49620 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.42%2C0.00094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C220:34 scaffold1846 SAMTools SNP 51588 51588 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C0.0029%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C55:58 scaffold1846 SAMTools SNP 63277 63277 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1846 SAMTools SNP 77225 77225 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C54%2C0:99 scaffold1846 SAMTools SNP 77318 77318 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1846 SAMTools SNP 77324 77324 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.46%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1846 SAMTools SNP 78933 78933 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0021%2C9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C228:99 scaffold1846 SAMTools SNP 79020 79020 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1846 SAMTools SNP 79477 79477 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold1846 SAMTools SNP 79825 79825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1846 SAMTools SNP 79870 79870 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold1846 SAMTools SNP 80124 80124 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1846 SAMTools SNP 80274 80274 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1846 SAMTools SNP 81715 81715 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1846 SAMTools SNP 82509 82509 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1846 SAMTools SNP 86989 86989 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1846 SAMTools SNP 88138 88138 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1846 SAMTools SNP 88141 88141 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1846 SAMTools SNP 89987 89987 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1846 SAMTools SNP 90032 90032 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1846 SAMTools SNP 93619 93619 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1846 SAMTools SNP 96605 96605 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1846 SAMTools SNP 103462 103462 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.15%2C4.8e-22%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C241:43 scaffold1846 SAMTools SNP 103614 103614 8.44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1847 SAMTools SNP 27200 27200 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.45%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C166:44 scaffold1847 SAMTools SNP 28713 28713 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1847 SAMTools SNP 46516 46516 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold1847 SAMTools SNP 46774 46774 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C201:50 scaffold1847 SAMTools SNP 48539 48539 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C43%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.00048%2C0.15%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1847 SAMTools SNP 48559 48559 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.004%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1847 SAMTools SNP 48686 48686 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.38%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1847 SAMTools SNP 55652 55652 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.035%2C6e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C172:91 scaffold1848 SAMTools SNP 3970 3970 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 4080 4080 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 18622 18622 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1848 SAMTools SNP 18675 18675 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-4.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C26:27 scaffold1848 SAMTools SNP 19706 19706 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold1848 SAMTools SNP 36832 36832 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D21%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C84%2C0:99 scaffold1848 SAMTools SNP 38302 38302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C43%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1848 SAMTools SNP 38369 38369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1848 SAMTools SNP 38898 38898 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1848 SAMTools SNP 40148 40148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1848 SAMTools SNP 41233 41233 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 41244 41244 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 43370 43370 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C33%2C0:63 scaffold1848 SAMTools SNP 43943 43943 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1848 SAMTools SNP 43973 43973 19.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1848 SAMTools SNP 44063 44063 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.57%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C208:93 scaffold1848 SAMTools SNP 44103 44103 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.5e-11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C160:54 scaffold1848 SAMTools SNP 45285 45285 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold1848 SAMTools SNP 45354 45354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1076%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C89%2C105%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 46510 46510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D743%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C328%2C50%2C173%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 46525 46525 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D897%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C288%2C112%2C251%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 48147 48147 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D719%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C143%2C337%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-18%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 49912 49912 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C467%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 49982 49982 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C83%2C193%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C4e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 49994 49994 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C161%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 50027 50027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C204%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 50273 50273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C227%2C101%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1848 SAMTools SNP 50399 50399 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1848 SAMTools SNP 50431 50431 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C78%2C0:99 scaffold1848 SAMTools SNP 53999 53999 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold1848 SAMTools SNP 54870 54870 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1848 SAMTools SNP 55965 55965 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1848 SAMTools SNP 60718 60718 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1848 SAMTools SNP 61520 61520 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.47%2C0.36%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C250:99 scaffold1848 SAMTools SNP 61563 61563 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C253:99 scaffold1848 SAMTools SNP 61907 61907 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 62634 62634 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold1848 SAMTools SNP 62977 62977 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.31%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1848 SAMTools SNP 63024 63024 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1848 SAMTools SNP 66163 66163 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1848 SAMTools SNP 66250 66250 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 66255 66255 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 66319 66319 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 68410 68410 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1848 SAMTools SNP 68467 68467 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1848 SAMTools SNP 70659 70659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 71217 71217 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold1848 SAMTools SNP 71296 71296 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1848 SAMTools SNP 71342 71342 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1848 SAMTools SNP 71391 71391 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1848 SAMTools SNP 71409 71409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 71804 71804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1848 SAMTools SNP 73234 73234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1848 SAMTools SNP 73441 73441 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1848 SAMTools SNP 75901 75901 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1848 SAMTools SNP 76003 76003 19.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1848 SAMTools SNP 76015 76015 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1848 SAMTools SNP 76017 76017 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1848 SAMTools SNP 76238 76238 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1848 SAMTools SNP 76666 76666 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1848 SAMTools SNP 76772 76772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 76777 76777 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1848 SAMTools SNP 77836 77836 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1848 SAMTools SNP 77916 77916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1848 SAMTools SNP 77940 77940 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1848 SAMTools SNP 84140 84140 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 84314 84314 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1848 SAMTools SNP 86553 86553 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1848 SAMTools SNP 86560 86560 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1848 SAMTools SNP 87773 87773 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1848 SAMTools SNP 88502 88502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 88932 88932 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 89093 89093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.061%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 90025 90025 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1848 SAMTools SNP 90049 90049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1848 SAMTools SNP 90786 90786 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1848 SAMTools SNP 90810 90810 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1848 SAMTools SNP 90837 90837 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1848 SAMTools SNP 91581 91581 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1848 SAMTools SNP 91914 91914 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.004%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1848 SAMTools SNP 94389 94389 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1848 SAMTools SNP 96702 96702 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.35%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold1848 SAMTools SNP 96708 96708 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.043%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1848 SAMTools SNP 97020 97020 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1848 SAMTools SNP 103915 103915 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1848 SAMTools SNP 104750 104750 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1848 SAMTools SNP 114334 114334 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1848 SAMTools SNP 114505 114505 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C39%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 114785 114785 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1848 SAMTools SNP 115442 115442 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.0027%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C244:99 scaffold1848 SAMTools SNP 132266 132266 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1848 SAMTools SNP 132365 132365 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1848 SAMTools SNP 133250 133250 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.51%2C2.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1849 SAMTools SNP 436 436 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C1%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1849 SAMTools SNP 29949 29949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1849 SAMTools SNP 30023 30023 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1849 SAMTools SNP 34380 34380 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1849 SAMTools SNP 34518 34518 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C237%2C37%2C22%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00015%2C0.12%2C1%2C3.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1849 SAMTools SNP 34575 34575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D537%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C124%2C131%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 34584 34584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C94%2C51%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.006%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 35024 35024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C124%2C4%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 35030 35030 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C148%2C3%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 36171 36171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C80%2C38%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 36218 36218 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 36981 36981 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C229:34 scaffold1849 SAMTools SNP 37842 37842 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 38143 38143 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C196%2C53%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 38513 38513 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C66%2C7%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 39161 39161 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1849 SAMTools SNP 39234 39234 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C363%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 40504 40504 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C13%2C60%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 46868 46868 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.48%3BPV4%3D1%2C9.4e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C35:30 scaffold1849 SAMTools SNP 46937 46937 26.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold1849 SAMTools SNP 47107 47107 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C30%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.021%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1849 SAMTools SNP 48428 48428 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 48674 48674 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1849 SAMTools SNP 48677 48677 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.57%2C0.0066%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1849 SAMTools SNP 49506 49506 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 49551 49551 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1849 SAMTools SNP 49557 49557 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.054%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1849 SAMTools SNP 50103 50103 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1849 SAMTools SNP 50881 50881 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 50966 50966 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 51260 51260 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 52695 52695 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1849 SAMTools SNP 53029 53029 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1849 SAMTools SNP 54654 54654 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 54684 54684 58.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold1849 SAMTools SNP 55101 55101 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1849 SAMTools SNP 55307 55307 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1849 SAMTools SNP 55560 55560 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1849 SAMTools SNP 55593 55593 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1849 SAMTools SNP 56949 56949 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 57367 57367 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold1849 SAMTools SNP 57427 57427 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold1849 SAMTools SNP 57642 57642 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1849 SAMTools SNP 57648 57648 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1849 SAMTools SNP 58059 58059 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1849 SAMTools SNP 58096 58096 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 59276 59276 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1849 SAMTools SNP 59319 59319 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1849 SAMTools SNP 59342 59342 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1849 SAMTools SNP 63650 63650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1849 SAMTools SNP 64980 64980 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold1849 SAMTools SNP 65273 65273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1849 SAMTools SNP 65285 65285 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1849 SAMTools SNP 65293 65293 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1849 SAMTools SNP 66479 66479 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 67075 67075 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1849 SAMTools SNP 67534 67534 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1849 SAMTools SNP 67622 67622 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1849 SAMTools SNP 67743 67743 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1849 SAMTools SNP 68508 68508 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1849 SAMTools SNP 68721 68721 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1849 SAMTools SNP 68756 68756 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C118:99 scaffold1849 SAMTools SNP 68796 68796 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C175:77 scaffold1849 SAMTools SNP 69577 69577 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 69640 69640 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 69944 69944 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 70063 70063 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 70066 70066 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 72026 72026 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 72393 72393 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1849 SAMTools SNP 72427 72427 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1849 SAMTools SNP 75928 75928 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 76177 76177 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C125:80 scaffold1849 SAMTools SNP 76189 76189 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 76318 76318 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1849 SAMTools SNP 76333 76333 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1849 SAMTools SNP 77509 77509 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1849 SAMTools SNP 77552 77552 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1849 SAMTools SNP 77853 77853 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C39%2C0:70 scaffold1849 SAMTools SNP 78457 78457 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1849 SAMTools SNP 79014 79014 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1849 SAMTools SNP 79292 79292 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1849 SAMTools SNP 79363 79363 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.48%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C216:99 scaffold1849 SAMTools SNP 79666 79666 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1849 SAMTools SNP 79851 79851 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1849 SAMTools SNP 80101 80101 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1849 SAMTools SNP 80136 80136 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1849 SAMTools SNP 80626 80626 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 80658 80658 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 80674 80674 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 80784 80784 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 81316 81316 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold1849 SAMTools SNP 81349 81349 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 81528 81528 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1849 SAMTools SNP 81912 81912 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1849 SAMTools SNP 81926 81926 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 82030 82030 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 82189 82189 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 82216 82216 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1849 SAMTools SNP 85971 85971 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1849 SAMTools SNP 89087 89087 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1849 SAMTools SNP 89145 89145 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C127:85 scaffold1849 SAMTools SNP 89153 89153 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1849 SAMTools SNP 89329 89329 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1849 SAMTools SNP 90204 90204 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C26:29 scaffold1849 SAMTools SNP 90240 90240 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold1849 SAMTools SNP 90671 90671 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C24%2C0:45 scaffold1849 SAMTools SNP 90718 90718 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C36%2C0:69 scaffold1849 SAMTools SNP 91019 91019 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1849 SAMTools SNP 92144 92144 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1849 SAMTools SNP 92396 92396 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1849 SAMTools SNP 92742 92742 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1849 SAMTools SNP 92965 92965 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1849 SAMTools SNP 93253 93253 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1849 SAMTools SNP 93306 93306 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.13%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1849 SAMTools SNP 94032 94032 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1849 SAMTools SNP 94091 94091 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold1849 SAMTools SNP 94310 94310 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C144:99 scaffold1849 SAMTools SNP 94410 94410 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.53%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1849 SAMTools SNP 96487 96487 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D3%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C144%2C0:99 scaffold1849 SAMTools SNP 105366 105366 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1849 SAMTools SNP 106843 106843 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1849 SAMTools SNP 106846 106846 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1849 SAMTools SNP 112568 112568 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C17%2C6%3BMQ%3D22%3BFQ%3D115%3BPV4%3D0.31%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C153:99 scaffold1849 SAMTools SNP 112772 112772 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C31%2C10%2C13%3BMQ%3D36%3BFQ%3D109%3BPV4%3D0.81%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1849 SAMTools SNP 117752 117752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1219%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C724%2C475%3BMQ%3D29%3BFQ%3D-282%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 118064 118064 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1110%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C144%2C106%3BMQ%3D30%3BFQ%3D-282%3BPV4%3D0.43%2C1%2C0.087%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 118403 118403 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D741%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D328%2C25%2C92%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-30%2C0.17%2C1%2C3.7e-40;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 118716 118716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1712%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C711%2C34%2C275%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C2.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 118740 118740 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1193%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C596%2C36%2C373%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 118871 118871 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D858%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C374%2C38%2C406%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1.3e-09%2C0.00013%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 119314 119314 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1203%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1849 SAMTools SNP 138391 138391 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C16%2C77%2C12%3BMQ%3D45%3BFQ%3D75%3BPV4%3D0.092%2C3.1e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C237:99 scaffold1849 SAMTools SNP 139136 139136 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C117%3BMQ%3D3%3BFQ%3D-282%3BPV4%3D1%2C0.43%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C255%2C0:57 scaffold1849 SAMTools SNP 141509 141509 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 141868 141868 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1849 SAMTools SNP 172171 172171 46.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold1849 SAMTools SNP 174349 174349 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 175129 175129 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C5%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1849 SAMTools SNP 175156 175156 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C12%3BMQ%3D50%3BFQ%3D-190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1849 SAMTools SNP 178402 178402 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 273967 273967 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D17%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C108%2C0:99 scaffold1849 SAMTools SNP 277023 277023 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1849 SAMTools SNP 277051 277051 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.034%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold1849 SAMTools SNP 281317 281317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.073%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 339010 339010 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.21%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1849 SAMTools SNP 339034 339034 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1849 SAMTools SNP 345245 345245 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1849 SAMTools SNP 345290 345290 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C17%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0031%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1849 SAMTools SNP 356157 356157 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1849 SAMTools SNP 362092 362092 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D17%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C25%2C0:46 scaffold1849 SAMTools SNP 362111 362111 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C14%2C0%3BMQ%3D16%3BFQ%3D-41%3BPV4%3D1%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C14%2C0:25 scaffold1849 SAMTools SNP 364126 364126 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.31%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1849 SAMTools SNP 385404 385404 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold1849 SAMTools SNP 385445 385445 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1849 SAMTools SNP 386148 386148 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C7%2C11%3BMQ%3D48%3BFQ%3D122%3BPV4%3D2e-05%2C8.6e-16%2C1.1e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C240:99 scaffold1849 SAMTools SNP 386199 386199 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1849 SAMTools SNP 387154 387154 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1849 SAMTools SNP 387314 387314 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.05%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1849 SAMTools SNP 387324 387324 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C24%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.14%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C105:99 scaffold1849 SAMTools SNP 390453 390453 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C21%2C21%2C18%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 390470 390470 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C17%2C19%2C18%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 390503 390503 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C0%2C14%3BMQ%3D41%3BFQ%3D69%3BPV4%3D0.003%2C1%2C0.063%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1849 SAMTools SNP 391071 391071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C38%3BMQ%3D40%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1849 SAMTools SNP 391158 391158 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C21%3BMQ%3D37%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1849 SAMTools SNP 391547 391547 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C48%2C0:93 scaffold1849 SAMTools SNP 391589 391589 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C24%2C0:45 scaffold1849 SAMTools SNP 391799 391799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1849 SAMTools SNP 391832 391832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C5%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 392356 392356 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1849 SAMTools SNP 394655 394655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C40%2C80%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 394811 394811 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C136%2C2%2C91%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.57%2C2.1e-178%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1849 SAMTools SNP 423955 423955 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1849 SAMTools SNP 424627 424627 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 431177 431177 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 431190 431190 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 431232 431232 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1849 SAMTools SNP 432623 432623 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C151:31 scaffold1849 SAMTools SNP 432631 432631 71.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold1849 SAMTools SNP 433728 433728 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C13%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.18%2C0.2%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 433732 433732 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C10%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1849 SAMTools SNP 434232 434232 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C25%2C1%3BMQ%3D49%3BFQ%3D222%3BPV4%3D0.58%2C1%2C0.19%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1849 SAMTools SNP 434580 434580 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1849 SAMTools SNP 434824 434824 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1849 SAMTools SNP 435792 435792 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold1849 SAMTools SNP 435795 435795 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold1849 SAMTools SNP 438337 438337 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D48%3BFQ%3D37%3BPV4%3D0.17%2C0.35%2C0.34%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C64:67 scaffold1849 SAMTools SNP 438632 438632 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C70%2C0%2C13%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C209:99 scaffold1849 SAMTools SNP 438653 438653 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C193:99 scaffold1849 SAMTools SNP 438663 438663 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold1849 SAMTools SNP 444678 444678 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1849 SAMTools SNP 444692 444692 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1849 SAMTools SNP 444769 444769 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1849 SAMTools SNP 444790 444790 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1849 SAMTools SNP 445163 445163 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1849 SAMTools SNP 446122 446122 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1849 SAMTools SNP 446140 446140 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1849 SAMTools SNP 446464 446464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 446478 446478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1849 SAMTools SNP 446862 446862 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1849 SAMTools SNP 447418 447418 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1849 SAMTools SNP 447462 447462 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 2015 2015 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0054%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C0.089%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1850 SAMTools SNP 2027 2027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1850 SAMTools SNP 36459 36459 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C234:99 scaffold1850 SAMTools SNP 37194 37194 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1850 SAMTools SNP 37775 37775 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.018%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C88:60 scaffold1850 SAMTools SNP 41101 41101 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.014%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1850 SAMTools SNP 44252 44252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C5%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.35%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold1850 SAMTools SNP 44281 44281 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.62%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1850 SAMTools SNP 44567 44567 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1850 SAMTools SNP 44597 44597 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1850 SAMTools SNP 45126 45126 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1850 SAMTools SNP 45837 45837 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 46233 46233 55.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold1850 SAMTools SNP 46281 46281 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C5:8 scaffold1850 SAMTools SNP 46296 46296 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1850 SAMTools SNP 47543 47543 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1850 SAMTools SNP 47837 47837 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1850 SAMTools SNP 47891 47891 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C107:99 scaffold1850 SAMTools SNP 48308 48308 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold1850 SAMTools SNP 48320 48320 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1850 SAMTools SNP 48335 48335 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1850 SAMTools SNP 49699 49699 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 50149 50149 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C9%2C0:16 scaffold1850 SAMTools SNP 50159 50159 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C127:54 scaffold1850 SAMTools SNP 50218 50218 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1850 SAMTools SNP 52923 52923 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1850 SAMTools SNP 55528 55528 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1850 SAMTools SNP 56836 56836 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1850 SAMTools SNP 56860 56860 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold1850 SAMTools SNP 57486 57486 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1850 SAMTools SNP 57534 57534 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold1850 SAMTools SNP 57933 57933 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1850 SAMTools SNP 57942 57942 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1850 SAMTools SNP 58528 58528 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1850 SAMTools SNP 58537 58537 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C18%2C0:33 scaffold1850 SAMTools SNP 58834 58834 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold1850 SAMTools SNP 58885 58885 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1850 SAMTools SNP 59042 59042 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.3%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1850 SAMTools SNP 59120 59120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1850 SAMTools SNP 59533 59533 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 59603 59603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C8%2C19%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.23%2C0.057%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1850 SAMTools SNP 60048 60048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C6%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.37%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1850 SAMTools SNP 60632 60632 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C7%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1850 SAMTools SNP 60708 60708 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold1850 SAMTools SNP 60753 60753 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1850 SAMTools SNP 61028 61028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1850 SAMTools SNP 61110 61110 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.087%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1850 SAMTools SNP 61123 61123 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C0.29%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1850 SAMTools SNP 61166 61166 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold1850 SAMTools SNP 61316 61316 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold1850 SAMTools SNP 61364 61364 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1850 SAMTools SNP 61488 61488 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1850 SAMTools SNP 61906 61906 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C23%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1850 SAMTools SNP 62210 62210 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1850 SAMTools SNP 62257 62257 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.002%2C7.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1850 SAMTools SNP 62357 62357 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C9%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.32%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1850 SAMTools SNP 62636 62636 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1850 SAMTools SNP 62671 62671 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C30%3BMQ%3D50%3BFQ%3D-140%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C113%2C0:99 scaffold1850 SAMTools SNP 62704 62704 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C37%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold1850 SAMTools SNP 62733 62733 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1850 SAMTools SNP 63098 63098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1850 SAMTools SNP 63707 63707 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1850 SAMTools SNP 63738 63738 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1850 SAMTools SNP 64887 64887 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C252:99 scaffold1850 SAMTools SNP 64894 64894 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C185:99 scaffold1850 SAMTools SNP 66938 66938 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 66972 66972 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 67318 67318 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold1850 SAMTools SNP 67371 67371 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1850 SAMTools SNP 74491 74491 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1850 SAMTools SNP 74512 74512 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1850 SAMTools SNP 75413 75413 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1850 SAMTools SNP 96911 96911 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1850 SAMTools SNP 114931 114931 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1850 SAMTools SNP 116636 116636 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1850 SAMTools SNP 129715 129715 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1850 SAMTools SNP 129769 129769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold1850 SAMTools SNP 130100 130100 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.18%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold1850 SAMTools SNP 130481 130481 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1850 SAMTools SNP 130484 130484 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1850 SAMTools SNP 130970 130970 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.33%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1850 SAMTools SNP 130976 130976 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C92:81 scaffold1850 SAMTools SNP 131009 131009 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1850 SAMTools SNP 131479 131479 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.2%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C109:99 scaffold1850 SAMTools SNP 131493 131493 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C112:99 scaffold1850 SAMTools SNP 131566 131566 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold1850 SAMTools SNP 133331 133331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1850 SAMTools SNP 137931 137931 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 137946 137946 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 139862 139862 12 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1850 SAMTools SNP 140297 140297 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1850 SAMTools SNP 140714 140714 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.001%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C80:54 scaffold1850 SAMTools SNP 145594 145594 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 145841 145841 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 153239 153239 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1850 SAMTools SNP 153850 153850 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold1850 SAMTools SNP 153888 153888 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1850 SAMTools SNP 155779 155779 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1850 SAMTools SNP 155866 155866 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1850 SAMTools SNP 156730 156730 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1850 SAMTools SNP 158178 158178 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 168657 168657 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1850 SAMTools SNP 170492 170492 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 185131 185131 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C3%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C232:99 scaffold1850 SAMTools SNP 189983 189983 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1850 SAMTools SNP 189998 189998 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold1850 SAMTools SNP 190303 190303 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1850 SAMTools SNP 190375 190375 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.4%2C0.0011%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C124:42 scaffold1850 SAMTools SNP 191280 191280 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1850 SAMTools SNP 191447 191447 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1850 SAMTools SNP 193435 193435 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1850 SAMTools SNP 193479 193479 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1850 SAMTools SNP 193587 193587 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 194123 194123 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.022%2C0.12%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C197:60 scaffold1850 SAMTools SNP 195089 195089 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1850 SAMTools SNP 195106 195106 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold1850 SAMTools SNP 195118 195118 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1850 SAMTools SNP 195699 195699 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1850 SAMTools SNP 195761 195761 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1850 SAMTools SNP 195975 195975 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C17%2C1%3BMQ%3D44%3BFQ%3D58%3BPV4%3D0.18%2C4.2e-28%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1850 SAMTools SNP 196047 196047 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C17%3BMQ%3D43%3BFQ%3D182%3BPV4%3D1%2C0.13%2C0.043%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1850 SAMTools SNP 196812 196812 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D29%3BFQ%3D-32%3BPV4%3D1%2C0.28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C5%2C0:9 scaffold1850 SAMTools SNP 196829 196829 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C3%2C4%3BMQ%3D22%3BFQ%3D-36%3BPV4%3D1%2C0.25%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1850 SAMTools SNP 197243 197243 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C3%2C25%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.11%2C2e-67%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C250:99 scaffold1850 SAMTools SNP 202945 202945 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 202951 202951 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 203501 203501 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1850 SAMTools SNP 203976 203976 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1850 SAMTools SNP 204028 204028 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1850 SAMTools SNP 204354 204354 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C22:25 scaffold1850 SAMTools SNP 204378 204378 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1850 SAMTools SNP 205943 205943 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1850 SAMTools SNP 205970 205970 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 206235 206235 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 206756 206756 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 206779 206779 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 206795 206795 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1850 SAMTools SNP 207779 207779 17.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold1850 SAMTools SNP 208542 208542 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1850 SAMTools SNP 208581 208581 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1850 SAMTools SNP 208605 208605 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.072%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold1850 SAMTools SNP 209008 209008 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1850 SAMTools SNP 209104 209104 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C24%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.5e-28%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C185:48 scaffold1850 SAMTools SNP 209119 209119 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C3.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C231:99 scaffold1850 SAMTools SNP 209424 209424 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1850 SAMTools SNP 210427 210427 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1850 SAMTools SNP 212398 212398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1850 SAMTools SNP 212706 212706 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C6%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.6e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1850 SAMTools SNP 212941 212941 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00048%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1850 SAMTools SNP 212984 212984 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.039%2C1.2e-07%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1850 SAMTools SNP 213037 213037 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C15%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold1850 SAMTools SNP 213935 213935 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1850 SAMTools SNP 213956 213956 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1851 SAMTools SNP 4199 4199 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1851 SAMTools SNP 17015 17015 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.02%2C2.8e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C197:80 scaffold1851 SAMTools SNP 18104 18104 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C60%2C0:99 scaffold1851 SAMTools SNP 18584 18584 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C16%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.77%2C2.3e-43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1851 SAMTools SNP 18743 18743 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C5e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C216:64 scaffold1851 SAMTools SNP 18866 18866 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1851 SAMTools SNP 19337 19337 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold1851 SAMTools SNP 19487 19487 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold1851 SAMTools SNP 19693 19693 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C96%2C0:99 scaffold1851 SAMTools SNP 19870 19870 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1851 SAMTools SNP 19996 19996 34.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold1851 SAMTools SNP 65781 65781 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1851 SAMTools SNP 65784 65784 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1851 SAMTools SNP 115519 115519 77.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold1851 SAMTools SNP 115983 115983 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.00013%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C35:38 scaffold1852 SAMTools SNP 501 501 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1852 SAMTools SNP 780 780 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1852 SAMTools SNP 804 804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1852 SAMTools SNP 1613 1613 6.2 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C33%2C30%2C35%2C0%2C32:4 scaffold1852 SAMTools SNP 4275 4275 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C84%2C115%2C150%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1852 SAMTools SNP 5353 5353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1852 SAMTools SNP 5506 5506 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C13%2C37%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.015%2C7.5e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1852 SAMTools SNP 6044 6044 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1852 SAMTools SNP 6050 6050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1852 SAMTools SNP 6306 6306 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1852 SAMTools SNP 6869 6869 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D169%3BPV4%3D3.7e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1852 SAMTools SNP 6974 6974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1852 SAMTools SNP 7013 7013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C32%2C38%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold1852 SAMTools SNP 7496 7496 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1852 SAMTools SNP 7610 7610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1852 SAMTools SNP 8457 8457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1852 SAMTools SNP 8496 8496 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1852 SAMTools SNP 8523 8523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C8%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1852 SAMTools SNP 15328 15328 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1852 SAMTools SNP 15348 15348 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1852 SAMTools SNP 15494 15494 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.002%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C35:38 scaffold1852 SAMTools SNP 19338 19338 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1852 SAMTools SNP 19366 19366 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1852 SAMTools SNP 21340 21340 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1852 SAMTools SNP 21352 21352 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C21%2C0:39 scaffold1852 SAMTools SNP 21400 21400 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1852 SAMTools SNP 22072 22072 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1852 SAMTools SNP 22093 22093 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1852 SAMTools SNP 24312 24312 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold1852 SAMTools SNP 24348 24348 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1852 SAMTools SNP 24351 24351 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1852 SAMTools SNP 25029 25029 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.9e-06%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1852 SAMTools SNP 25673 25673 189 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C33:99 scaffold1852 SAMTools SNP 25727 25727 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.001%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1852 SAMTools SNP 25736 25736 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.25%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C252:99 scaffold1852 SAMTools SNP 25793 25793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C4%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1852 SAMTools SNP 27295 27295 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C17%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.14%2C0.29%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1852 SAMTools SNP 27307 27307 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1852 SAMTools SNP 27337 27337 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C66:69 scaffold1852 SAMTools SNP 27415 27415 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1852 SAMTools SNP 27475 27475 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C236:99 scaffold1852 SAMTools SNP 27789 27789 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1852 SAMTools SNP 27854 27854 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1852 SAMTools SNP 27894 27894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1852 SAMTools SNP 28171 28171 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1852 SAMTools SNP 28195 28195 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1852 SAMTools SNP 28608 28608 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1852 SAMTools SNP 28611 28611 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1852 SAMTools SNP 28641 28641 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1852 SAMTools SNP 30838 30838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1852 SAMTools SNP 32774 32774 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1852 SAMTools SNP 33179 33179 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1852 SAMTools SNP 33405 33405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1853 SAMTools SNP 71607 71607 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1853 SAMTools SNP 81407 81407 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1853 SAMTools SNP 81465 81465 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1853 SAMTools SNP 85680 85680 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1854 SAMTools SNP 20893 20893 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1854 SAMTools SNP 20905 20905 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1854 SAMTools SNP 20952 20952 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1854 SAMTools SNP 27329 27329 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.23%2C1.4e-22%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1854 SAMTools SNP 28032 28032 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.46%2C0.095%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C161:64 scaffold1855 SAMTools SNP 6071 6071 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 6095 6095 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D47.9%3BPV4%3D1%2C0.00031%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C91:78 scaffold1855 SAMTools SNP 6266 6266 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1855 SAMTools SNP 38479 38479 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.12%2C9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1855 SAMTools SNP 42509 42509 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.13%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 42859 42859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C8%2C46%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 42895 42895 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 43217 43217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C35%2C57%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-11%2C1%2C1%2C1.2e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 44618 44618 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1855 SAMTools SNP 44641 44641 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1855 SAMTools SNP 48394 48394 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1855 SAMTools SNP 48397 48397 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1855 SAMTools SNP 48414 48414 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1855 SAMTools SNP 50504 50504 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1855 SAMTools SNP 54574 54574 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 55256 55256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C243%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 56125 56125 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C155%2C30%2C21%3BMQ%3D50%3BFQ%3D210%3BPV4%3D2.9e-06%2C0.12%2C1%2C3.2e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1855 SAMTools SNP 61852 61852 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2253%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C844%2C284%2C913%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-05%2C1.7e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 62234 62234 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold1855 SAMTools SNP 63348 63348 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C56%2C10%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 63708 63708 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1855 SAMTools SNP 64910 64910 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.095%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 65757 65757 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1855 SAMTools SNP 65921 65921 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C10%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.45%2C4.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1855 SAMTools SNP 67047 67047 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C6%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.42%2C1%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1855 SAMTools SNP 67127 67127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C89%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.033%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 67723 67723 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1855 SAMTools SNP 67726 67726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1855 SAMTools SNP 67732 67732 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C231:73 scaffold1855 SAMTools SNP 68254 68254 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C92%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 69167 69167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C15%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold1855 SAMTools SNP 69172 69172 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1855 SAMTools SNP 69858 69858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 70582 70582 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C29%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1855 SAMTools SNP 70606 70606 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1855 SAMTools SNP 71680 71680 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1855 SAMTools SNP 71698 71698 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C3.6e-05%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1855 SAMTools SNP 72340 72340 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1855 SAMTools SNP 72352 72352 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1855 SAMTools SNP 72703 72703 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold1855 SAMTools SNP 72734 72734 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1855 SAMTools SNP 72761 72761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1855 SAMTools SNP 73168 73168 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C40%2C2%2C16%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.026%2C0.0026%2C1%2C4.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1855 SAMTools SNP 73267 73267 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C28%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0096%2C8.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C162:67 scaffold1855 SAMTools SNP 83175 83175 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1855 SAMTools SNP 83461 83461 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 83659 83659 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 83708 83708 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 83962 83962 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1855 SAMTools SNP 84861 84861 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 85337 85337 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 85759 85759 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1855 SAMTools SNP 85809 85809 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1855 SAMTools SNP 85832 85832 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold1855 SAMTools SNP 86797 86797 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 87589 87589 19 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1855 SAMTools SNP 87844 87844 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C20:23 scaffold1855 SAMTools SNP 93351 93351 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 93352 93352 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 93472 93472 92.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1855 SAMTools SNP 93746 93746 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C38:41 scaffold1855 SAMTools SNP 94207 94207 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D47%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C186:79 scaffold1855 SAMTools SNP 94242 94242 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D47%3BFQ%3D38%3BPV4%3D1%2C1%2C0.24%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C65:68 scaffold1855 SAMTools SNP 94243 94243 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D47%3BFQ%3D35%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C155:65 scaffold1855 SAMTools SNP 94542 94542 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D48%3BFQ%3D121%3BPV4%3D1%2C0.21%2C0.15%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C223:99 scaffold1855 SAMTools SNP 94605 94605 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1855 SAMTools SNP 94710 94710 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1855 SAMTools SNP 94937 94937 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0373%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1855 SAMTools SNP 97115 97115 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1855 SAMTools SNP 100730 100730 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1855 SAMTools SNP 100779 100779 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 101371 101371 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1855 SAMTools SNP 102920 102920 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1855 SAMTools SNP 104197 104197 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold1855 SAMTools SNP 104238 104238 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold1855 SAMTools SNP 105917 105917 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1855 SAMTools SNP 105931 105931 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C57%2C0:99 scaffold1855 SAMTools SNP 106353 106353 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1855 SAMTools SNP 107575 107575 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.49%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold1855 SAMTools SNP 108556 108556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1855 SAMTools SNP 108590 108590 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C228:99 scaffold1855 SAMTools SNP 108607 108607 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.27%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold1855 SAMTools SNP 108759 108759 48.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold1855 SAMTools SNP 108874 108874 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 112936 112936 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1855 SAMTools SNP 115899 115899 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1855 SAMTools SNP 117616 117616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1855 SAMTools SNP 117715 117715 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C11%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 119169 119169 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.3%2C0.058%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1855 SAMTools SNP 119178 119178 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.054%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1855 SAMTools SNP 119182 119182 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C24%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.29%2C0.049%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold1855 SAMTools SNP 119896 119896 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1855 SAMTools SNP 121155 121155 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1855 SAMTools SNP 121189 121189 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1855 SAMTools SNP 121196 121196 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 122767 122767 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C239:37 scaffold1855 SAMTools SNP 129294 129294 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D607%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D206%2C205%2C191%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1.4e-44%2C1.4e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1855 SAMTools SNP 130166 130166 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D940%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C849%2C88%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.47%2C0.45%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 134357 134357 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D866%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C315%3BMQ%3D18%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C255%2C0:99 scaffold1855 SAMTools SNP 138344 138344 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C169%2C123%2C138%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 138690 138690 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D908%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold1855 SAMTools SNP 139844 139844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C45%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1855 SAMTools SNP 139898 139898 127 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C19%2C4%2C153%2C0%2C150:27 scaffold1855 SAMTools SNP 140158 140158 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C87%2C148%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C2.3e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 140170 140170 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C107%2C104%2C78%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.49%2C5.2e-314%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1855 SAMTools SNP 141002 141002 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C110%2C96%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 156220 156220 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.18%2C0.4%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1855 SAMTools SNP 156253 156253 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.15%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1855 SAMTools SNP 162074 162074 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C21%2C0:35 scaffold1855 SAMTools SNP 183453 183453 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold1855 SAMTools SNP 183545 183545 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C129:98 scaffold1855 SAMTools SNP 190845 190845 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0059%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1855 SAMTools SNP 190848 190848 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1855 SAMTools SNP 191490 191490 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1855 SAMTools SNP 191511 191511 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1855 SAMTools SNP 191677 191677 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1855 SAMTools SNP 194785 194785 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1855 SAMTools SNP 195298 195298 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1855 SAMTools SNP 212974 212974 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D862%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C325%2C90%2C385%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-18%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1855 SAMTools SNP 213034 213034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1855 SAMTools SNP 214795 214795 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C262%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 215764 215764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C207%2C119%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1855 SAMTools SNP 215952 215952 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C73%2C1%2C152%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1856 SAMTools SNP 447 447 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 515 515 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 5887 5887 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold1856 SAMTools SNP 6967 6967 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1856 SAMTools SNP 57010 57010 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1856 SAMTools SNP 76467 76467 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C0.33%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1856 SAMTools SNP 79136 79136 95.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold1856 SAMTools SNP 82328 82328 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1856 SAMTools SNP 82941 82941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D43%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1856 SAMTools SNP 83013 83013 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D30%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C42%2C0:81 scaffold1856 SAMTools SNP 84084 84084 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 84096 84096 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 84349 84349 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1856 SAMTools SNP 84361 84361 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold1856 SAMTools SNP 84385 84385 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1856 SAMTools SNP 84724 84724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1856 SAMTools SNP 84754 84754 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1856 SAMTools SNP 85077 85077 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1856 SAMTools SNP 85108 85108 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.09%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C213:28 scaffold1856 SAMTools SNP 85111 85111 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C114:99 scaffold1856 SAMTools SNP 85219 85219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1856 SAMTools SNP 85252 85252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1856 SAMTools SNP 86173 86173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1856 SAMTools SNP 86795 86795 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.24%2C0.099%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C241:99 scaffold1856 SAMTools SNP 86798 86798 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C184:99 scaffold1856 SAMTools SNP 86849 86849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1856 SAMTools SNP 87057 87057 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.57%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1856 SAMTools SNP 87091 87091 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C2.4e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1856 SAMTools SNP 87530 87530 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1856 SAMTools SNP 91176 91176 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C114:99 scaffold1856 SAMTools SNP 91235 91235 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold1856 SAMTools SNP 91255 91255 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C136:99 scaffold1856 SAMTools SNP 91931 91931 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 92144 92144 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1856 SAMTools SNP 92154 92154 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.29%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1856 SAMTools SNP 92340 92340 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C9%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1856 SAMTools SNP 92550 92550 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C9%2C4%2C123%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D0.32%2C0.19%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C62%2C0:99 scaffold1856 SAMTools SNP 93020 93020 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1856 SAMTools SNP 93030 93030 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1856 SAMTools SNP 93771 93771 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1856 SAMTools SNP 93829 93829 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 112320 112320 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0036%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1856 SAMTools SNP 112344 112344 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C51%2C0:99 scaffold1856 SAMTools SNP 113375 113375 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1856 SAMTools SNP 113449 113449 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1856 SAMTools SNP 113527 113527 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1856 SAMTools SNP 113554 113554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1856 SAMTools SNP 115055 115055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1856 SAMTools SNP 115300 115300 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0001%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1856 SAMTools SNP 115301 115301 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C26%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.05%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C194:99 scaffold1856 SAMTools SNP 115343 115343 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C24%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.048%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1856 SAMTools SNP 115602 115602 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.034%2C0.002%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1856 SAMTools SNP 118300 118300 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold1856 SAMTools SNP 122080 122080 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1856 SAMTools SNP 139697 139697 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1856 SAMTools SNP 139745 139745 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold1856 SAMTools SNP 140198 140198 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1856 SAMTools SNP 140403 140403 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1856 SAMTools SNP 141154 141154 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1856 SAMTools SNP 141382 141382 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.0006%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C236:99 scaffold1856 SAMTools SNP 141384 141384 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1856 SAMTools SNP 141387 141387 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C39%2C0:75 scaffold1856 SAMTools SNP 141981 141981 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.26%2C0.018%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C235:99 scaffold1856 SAMTools SNP 141988 141988 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.26%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C154:99 scaffold1856 SAMTools SNP 142384 142384 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C234:99 scaffold1856 SAMTools SNP 142534 142534 74.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C15%2C0:27 scaffold1856 SAMTools SNP 142763 142763 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1856 SAMTools SNP 142781 142781 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 142799 142799 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 142950 142950 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold1856 SAMTools SNP 143158 143158 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1856 SAMTools SNP 143407 143407 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1856 SAMTools SNP 143415 143415 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1856 SAMTools SNP 143452 143452 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 143503 143503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1856 SAMTools SNP 144323 144323 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C207:69 scaffold1856 SAMTools SNP 144849 144849 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1856 SAMTools SNP 144882 144882 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold1856 SAMTools SNP 145008 145008 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1856 SAMTools SNP 145009 145009 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1856 SAMTools SNP 145298 145298 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1856 SAMTools SNP 145424 145424 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C203:63 scaffold1856 SAMTools SNP 145433 145433 77.1 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C145%2C195%2C0%2C183:39 scaffold1856 SAMTools SNP 146221 146221 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0013%2C0.027%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1856 SAMTools SNP 146248 146248 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1856 SAMTools SNP 146271 146271 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1856 SAMTools SNP 146320 146320 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1856 SAMTools SNP 146706 146706 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.23%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1856 SAMTools SNP 146757 146757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C36%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1856 SAMTools SNP 147222 147222 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1856 SAMTools SNP 148813 148813 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1856 SAMTools SNP 149710 149710 5.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1856 SAMTools SNP 149777 149777 28.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1856 SAMTools SNP 150133 150133 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1856 SAMTools SNP 150232 150232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1856 SAMTools SNP 150716 150716 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1856 SAMTools SNP 150863 150863 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold1856 SAMTools SNP 151094 151094 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold1856 SAMTools SNP 151115 151115 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.6%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1856 SAMTools SNP 151396 151396 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1856 SAMTools SNP 151815 151815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1856 SAMTools SNP 153081 153081 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1856 SAMTools SNP 153092 153092 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1856 SAMTools SNP 153093 153093 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1856 SAMTools SNP 153113 153113 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1856 SAMTools SNP 153524 153524 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C191:99 scaffold1856 SAMTools SNP 154050 154050 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.035%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1856 SAMTools SNP 154062 154062 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1856 SAMTools SNP 154158 154158 21 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C234%2C201%2C221%2C0%2C203:51 scaffold1856 SAMTools SNP 154389 154389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C39%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1856 SAMTools SNP 154506 154506 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C17%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1856 SAMTools SNP 154853 154853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1856 SAMTools SNP 154974 154974 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1856 SAMTools SNP 154998 154998 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1856 SAMTools SNP 155612 155612 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold1856 SAMTools SNP 155750 155750 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1856 SAMTools SNP 155786 155786 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1856 SAMTools SNP 156389 156389 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1856 SAMTools SNP 156404 156404 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1856 SAMTools SNP 156870 156870 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1856 SAMTools SNP 156879 156879 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C12:15 scaffold1856 SAMTools SNP 157032 157032 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1856 SAMTools SNP 157083 157083 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1856 SAMTools SNP 157101 157101 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold1856 SAMTools SNP 157874 157874 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1856 SAMTools SNP 157910 157910 57.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold1856 SAMTools SNP 158003 158003 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 158016 158016 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 158577 158577 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 161647 161647 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 161839 161839 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 161842 161842 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00098%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1856 SAMTools SNP 164216 164216 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1856 SAMTools SNP 164270 164270 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C223:99 scaffold1856 SAMTools SNP 164654 164654 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C38%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C190%2C0:99 scaffold1856 SAMTools SNP 164967 164967 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1856 SAMTools SNP 165033 165033 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1856 SAMTools SNP 166917 166917 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1856 SAMTools SNP 167082 167082 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1856 SAMTools SNP 167118 167118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 167124 167124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1856 SAMTools SNP 167511 167511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1856 SAMTools SNP 167669 167669 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1856 SAMTools SNP 167902 167902 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C120:79 scaffold1856 SAMTools SNP 168217 168217 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C137:99 scaffold1856 SAMTools SNP 168319 168319 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C48%2C0:88 scaffold1856 SAMTools SNP 170541 170541 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1856 SAMTools SNP 170792 170792 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C18:21 scaffold1856 SAMTools SNP 170817 170817 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1856 SAMTools SNP 171705 171705 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1856 SAMTools SNP 171729 171729 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1856 SAMTools SNP 171749 171749 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1856 SAMTools SNP 171936 171936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1856 SAMTools SNP 172015 172015 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1856 SAMTools SNP 172456 172456 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1856 SAMTools SNP 172930 172930 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1856 SAMTools SNP 173023 173023 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1856 SAMTools SNP 175361 175361 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C237:99 scaffold1856 SAMTools SNP 175810 175810 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1856 SAMTools SNP 175840 175840 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.22%2C0.26%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1857 SAMTools SNP 36232 36232 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 36262 36262 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1857 SAMTools SNP 36281 36281 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 53372 53372 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1857 SAMTools SNP 59489 59489 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C255%2C0:99 scaffold1857 SAMTools SNP 60742 60742 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1857 SAMTools SNP 61121 61121 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1857 SAMTools SNP 61148 61148 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold1857 SAMTools SNP 62257 62257 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1857 SAMTools SNP 75306 75306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1857 SAMTools SNP 84781 84781 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1857 SAMTools SNP 90513 90513 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 90725 90725 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 92734 92734 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 93040 93040 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1857 SAMTools SNP 93111 93111 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.3%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold1857 SAMTools SNP 93169 93169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1857 SAMTools SNP 97375 97375 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1857 SAMTools SNP 97396 97396 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1857 SAMTools SNP 107347 107347 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1857 SAMTools SNP 107716 107716 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C11%2C27%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.8%2C7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1857 SAMTools SNP 107959 107959 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold1857 SAMTools SNP 109012 109012 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D178%2C1%2C100%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4e-161%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1857 SAMTools SNP 109204 109204 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C75%2C3%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D1%2C1.2e-36%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C197%2C0:99 scaffold1857 SAMTools SNP 113974 113974 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1857 SAMTools SNP 117253 117253 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C240:99 scaffold1857 SAMTools SNP 117278 117278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1857 SAMTools SNP 117405 117405 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 123732 123732 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C58%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1857 SAMTools SNP 123747 123747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C64%2C5%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 124106 124106 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1857 SAMTools SNP 132543 132543 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C10%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C250:36 scaffold1857 SAMTools SNP 132566 132566 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold1857 SAMTools SNP 175499 175499 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C96:46 scaffold1857 SAMTools SNP 178855 178855 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1857 SAMTools SNP 178900 178900 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1857 SAMTools SNP 178915 178915 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.21%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C179:99 scaffold1857 SAMTools SNP 178959 178959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C5%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1857 SAMTools SNP 182178 182178 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C1%2C31%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold1857 SAMTools SNP 182202 182202 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C23%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.31%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C247:99 scaffold1857 SAMTools SNP 183697 183697 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1857 SAMTools SNP 191000 191000 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1857 SAMTools SNP 191009 191009 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1857 SAMTools SNP 191016 191016 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1857 SAMTools SNP 193480 193480 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1857 SAMTools SNP 201662 201662 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1857 SAMTools SNP 201697 201697 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold1857 SAMTools SNP 201719 201719 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1857 SAMTools SNP 207017 207017 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1857 SAMTools SNP 207076 207076 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1857 SAMTools SNP 256113 256113 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C2%3BMQ%3D45%3BFQ%3D135%3BPV4%3D1%2C0.24%2C0.11%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C162:99 scaffold1857 SAMTools SNP 256132 256132 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D46%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1857 SAMTools SNP 256705 256705 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1857 SAMTools SNP 256739 256739 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C4%2C0%3BMQ%3D46%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C229:91 scaffold1857 SAMTools SNP 256752 256752 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C227:95 scaffold1857 SAMTools SNP 300567 300567 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1857 SAMTools SNP 300571 300571 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1857 SAMTools SNP 306033 306033 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C6.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1857 SAMTools SNP 306747 306747 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C238:99 scaffold1857 SAMTools SNP 307511 307511 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1857 SAMTools SNP 307929 307929 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D0.43%2C0.041%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C136:99 scaffold1857 SAMTools SNP 307986 307986 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1857 SAMTools SNP 308066 308066 54.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold1857 SAMTools SNP 308118 308118 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1857 SAMTools SNP 308395 308395 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1857 SAMTools SNP 308538 308538 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1857 SAMTools SNP 308772 308772 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C25%3BMQ%3D48%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1857 SAMTools SNP 319183 319183 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C10%2C52%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 319219 319219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C32%2C43%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-05%2C1%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 319822 319822 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C92%2C14%2C9%3BMQ%3D50%3BFQ%3D213%3BPV4%3D8.8e-05%2C0.49%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1857 SAMTools SNP 320358 320358 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold1857 SAMTools SNP 323861 323861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C13%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 323875 323875 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C34%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 324503 324503 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 324530 324530 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C7%2C13%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C4.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1857 SAMTools SNP 324923 324923 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.28%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold1857 SAMTools SNP 324925 324925 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C223:99 scaffold1857 SAMTools SNP 325913 325913 196 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C221%2C0%2C218:39 scaffold1857 SAMTools SNP 327001 327001 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C13%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 327255 327255 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C21%2C28%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 327932 327932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C22%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1857 SAMTools SNP 328175 328175 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1857 SAMTools SNP 328259 328259 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C74%2C8%2C64%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.068%2C5e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1857 SAMTools SNP 328271 328271 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1857 SAMTools SNP 328576 328576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 328735 328735 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 328767 328767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1857 SAMTools SNP 328783 328783 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0058%2C1%2C1%2C2.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1857 SAMTools SNP 328928 328928 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C8%2C50%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 328979 328979 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 329460 329460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1857 SAMTools SNP 329505 329505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C21%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 330037 330037 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C28%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 331023 331023 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1857 SAMTools SNP 332935 332935 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 334105 334105 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold1857 SAMTools SNP 334111 334111 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold1857 SAMTools SNP 334115 334115 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold1857 SAMTools SNP 336154 336154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 337086 337086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.47%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 340946 340946 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1857 SAMTools SNP 341001 341001 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.028%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C107:64 scaffold1857 SAMTools SNP 341036 341036 26.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold1857 SAMTools SNP 342262 342262 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 347699 347699 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1857 SAMTools SNP 351642 351642 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold1857 SAMTools SNP 351672 351672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1857 SAMTools SNP 355101 355101 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1857 SAMTools SNP 357148 357148 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C213%2C23%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00064%2C0.16%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 361048 361048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 361118 361118 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 364307 364307 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C57%2C0:85 scaffold1857 SAMTools SNP 365780 365780 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1857 SAMTools SNP 366287 366287 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1857 SAMTools SNP 371593 371593 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C167:36 scaffold1857 SAMTools SNP 371606 371606 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.089%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1857 SAMTools SNP 373192 373192 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold1857 SAMTools SNP 373534 373534 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1857 SAMTools SNP 373559 373559 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold1857 SAMTools SNP 374626 374626 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0099%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1857 SAMTools SNP 374667 374667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 374984 374984 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1857 SAMTools SNP 375023 375023 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 375065 375065 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C81%2C0:99 scaffold1857 SAMTools SNP 375101 375101 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.27%2C5.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1857 SAMTools SNP 375181 375181 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.025%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C195:53 scaffold1857 SAMTools SNP 375442 375442 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold1857 SAMTools SNP 375619 375619 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 376259 376259 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 376349 376349 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1857 SAMTools SNP 376572 376572 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1857 SAMTools SNP 380965 380965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1857 SAMTools SNP 381004 381004 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.55%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1857 SAMTools SNP 381440 381440 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1857 SAMTools SNP 382631 382631 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1857 SAMTools SNP 382651 382651 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1857 SAMTools SNP 382927 382927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1857 SAMTools SNP 382969 382969 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold1857 SAMTools SNP 383194 383194 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 388615 388615 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1857 SAMTools SNP 390807 390807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1857 SAMTools SNP 391757 391757 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1857 SAMTools SNP 395446 395446 93 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1857 SAMTools SNP 441131 441131 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1857 SAMTools SNP 468655 468655 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.49%2C4.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1857 SAMTools SNP 475041 475041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C20%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1857 SAMTools SNP 475532 475532 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C1%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 475550 475550 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C0.22%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 476105 476105 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1857 SAMTools SNP 476199 476199 103 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold1857 SAMTools SNP 477220 477220 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.092%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold1857 SAMTools SNP 477268 477268 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.22%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1857 SAMTools SNP 478646 478646 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1857 SAMTools SNP 480319 480319 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1857 SAMTools SNP 480352 480352 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1857 SAMTools SNP 480358 480358 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 480454 480454 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1857 SAMTools SNP 481167 481167 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.29%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C228:99 scaffold1857 SAMTools SNP 481188 481188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1857 SAMTools SNP 481475 481475 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1857 SAMTools SNP 481490 481490 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1857 SAMTools SNP 481925 481925 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 482167 482167 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold1857 SAMTools SNP 482329 482329 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1857 SAMTools SNP 482341 482341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1857 SAMTools SNP 482349 482349 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1857 SAMTools SNP 482400 482400 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.4%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1857 SAMTools SNP 483090 483090 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 483308 483308 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0015%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C228:99 scaffold1857 SAMTools SNP 484040 484040 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C1%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 492413 492413 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 499641 499641 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1857 SAMTools SNP 500215 500215 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 502259 502259 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold1857 SAMTools SNP 502445 502445 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 502614 502614 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 504395 504395 59.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1857 SAMTools SNP 504925 504925 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1857 SAMTools SNP 507157 507157 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C7.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C210:99 scaffold1857 SAMTools SNP 507443 507443 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C5%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.12%2C4.4e-37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1857 SAMTools SNP 508177 508177 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C237:39 scaffold1857 SAMTools SNP 509794 509794 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1857 SAMTools SNP 510660 510660 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C26%2C13%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.073%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1857 SAMTools SNP 511100 511100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C38%2C103%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 517738 517738 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1857 SAMTools SNP 517777 517777 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1857 SAMTools SNP 524193 524193 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1857 SAMTools SNP 524562 524562 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1857 SAMTools SNP 524574 524574 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold1857 SAMTools SNP 524614 524614 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold1857 SAMTools SNP 525444 525444 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1857 SAMTools SNP 525680 525680 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1857 SAMTools SNP 529113 529113 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1857 SAMTools SNP 530555 530555 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 532608 532608 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 535517 535517 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 535543 535543 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 541007 541007 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.087%2C4.8e-16%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1857 SAMTools SNP 541093 541093 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1857 SAMTools SNP 541240 541240 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 541684 541684 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1857 SAMTools SNP 541708 541708 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 541764 541764 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 542125 542125 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 542712 542712 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1857 SAMTools SNP 542955 542955 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1857 SAMTools SNP 543003 543003 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 544440 544440 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1857 SAMTools SNP 544470 544470 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1857 SAMTools SNP 544838 544838 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1857 SAMTools SNP 544853 544853 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold1857 SAMTools SNP 545433 545433 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1857 SAMTools SNP 545468 545468 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 546373 546373 45.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1857 SAMTools SNP 546945 546945 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 557479 557479 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1857 SAMTools SNP 557536 557536 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1857 SAMTools SNP 558223 558223 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1857 SAMTools SNP 558225 558225 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1857 SAMTools SNP 566995 566995 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C255%2C0:99 scaffold1857 SAMTools SNP 567763 567763 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C2%2C177%2C7%3BMQ%3D50%3BFQ%3D-209%3BPV4%3D0.084%2C0.014%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold1857 SAMTools SNP 568390 568390 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C0%2C50%3BMQ%3D50%3BFQ%3D218%3BPV4%3D2.2e-09%2C0.0016%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1857 SAMTools SNP 569736 569736 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C38%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D7.5e-13%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1857 SAMTools SNP 570799 570799 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1857 SAMTools SNP 570807 570807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1857 SAMTools SNP 576583 576583 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 583751 583751 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 583767 583767 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 584491 584491 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1857 SAMTools SNP 586778 586778 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1857 SAMTools SNP 586811 586811 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1857 SAMTools SNP 608982 608982 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold1857 SAMTools SNP 609070 609070 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C60%2C0:99 scaffold1857 SAMTools SNP 609321 609321 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold1857 SAMTools SNP 628937 628937 19.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1857 SAMTools SNP 629435 629435 15.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold1857 SAMTools SNP 630202 630202 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C51%2C0:98 scaffold1857 SAMTools SNP 630600 630600 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1857 SAMTools SNP 630635 630635 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1858 SAMTools SNP 393 393 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 471 471 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 1333 1333 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1858 SAMTools SNP 2044 2044 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.29%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1858 SAMTools SNP 2065 2065 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1858 SAMTools SNP 2130 2130 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C0.038%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1858 SAMTools SNP 2342 2342 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C2%2C5%3BMQ%3D45%3BFQ%3D101%3BPV4%3D0.67%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1858 SAMTools SNP 2762 2762 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C5%2C5%3BMQ%3D46%3BFQ%3D128%3BPV4%3D0.72%2C1%2C0.0096%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1858 SAMTools SNP 2807 2807 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1858 SAMTools SNP 3685 3685 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1858 SAMTools SNP 3688 3688 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1858 SAMTools SNP 5137 5137 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C11%3BMQ%3D48%3BFQ%3D222%3BPV4%3D1%2C1%2C0.0066%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1858 SAMTools SNP 5151 5151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C4%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C0.052%2C0.08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 5434 5434 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C3%3BMQ%3D45%3BFQ%3D41%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1858 SAMTools SNP 6053 6053 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C0%2C11%3BMQ%3D45%3BFQ%3D111%3BPV4%3D0.18%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1858 SAMTools SNP 6134 6134 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1858 SAMTools SNP 7889 7889 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 8373 8373 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.23%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1858 SAMTools SNP 8405 8405 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.0024%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 8459 8459 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C9%2C75%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 9550 9550 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 9705 9705 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D18%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C75%2C0:99 scaffold1858 SAMTools SNP 10246 10246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1858 SAMTools SNP 11012 11012 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.29%2C0.21%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1858 SAMTools SNP 11015 11015 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.29%2C0.015%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1858 SAMTools SNP 11054 11054 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C14%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1858 SAMTools SNP 11063 11063 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.00034%2C0.0081%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1858 SAMTools SNP 11679 11679 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.19%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1858 SAMTools SNP 11873 11873 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1858 SAMTools SNP 11896 11896 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1858 SAMTools SNP 12317 12317 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D21%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.019%2C5.7e-25%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1858 SAMTools SNP 12359 12359 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C0%2C15%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1858 SAMTools SNP 12366 12366 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C16%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.53%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1858 SAMTools SNP 12710 12710 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1858 SAMTools SNP 13148 13148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1858 SAMTools SNP 13357 13357 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.2%2C0.45%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1858 SAMTools SNP 13945 13945 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1858 SAMTools SNP 14013 14013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1858 SAMTools SNP 14299 14299 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1858 SAMTools SNP 15007 15007 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1858 SAMTools SNP 15469 15469 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1858 SAMTools SNP 15662 15662 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1858 SAMTools SNP 15716 15716 111 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C27%2C0%2C139%2C12%2C136:51 scaffold1858 SAMTools SNP 16200 16200 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1858 SAMTools SNP 16208 16208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1858 SAMTools SNP 16254 16254 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C151:40 scaffold1858 SAMTools SNP 16362 16362 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.11%2C0.0021%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1858 SAMTools SNP 16608 16608 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 16918 16918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C20%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1858 SAMTools SNP 17014 17014 43.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold1858 SAMTools SNP 17521 17521 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1858 SAMTools SNP 17547 17547 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1858 SAMTools SNP 17625 17625 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold1858 SAMTools SNP 17661 17661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1858 SAMTools SNP 18006 18006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1858 SAMTools SNP 18039 18039 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.32%2C0.45%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1858 SAMTools SNP 18622 18622 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1858 SAMTools SNP 19081 19081 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1858 SAMTools SNP 19145 19145 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C69:42 scaffold1858 SAMTools SNP 19176 19176 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1858 SAMTools SNP 20818 20818 38.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C7:10 scaffold1858 SAMTools SNP 20908 20908 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1858 SAMTools SNP 20932 20932 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1858 SAMTools SNP 21405 21405 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1858 SAMTools SNP 21487 21487 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C21%2C0:39 scaffold1858 SAMTools SNP 22077 22077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1858 SAMTools SNP 22091 22091 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C21%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.021%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1858 SAMTools SNP 22753 22753 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1858 SAMTools SNP 30547 30547 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold1858 SAMTools SNP 30589 30589 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1858 SAMTools SNP 30879 30879 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1858 SAMTools SNP 31002 31002 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1858 SAMTools SNP 31054 31054 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold1858 SAMTools SNP 31456 31456 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1858 SAMTools SNP 35415 35415 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C529%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1858 SAMTools SNP 35981 35981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D766%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C539%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1858 SAMTools SNP 36137 36137 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3055%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C362%2C2609%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1858 SAMTools SNP 36595 36595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C137%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0015%2C0.26%2C1%2C3e-11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1858 SAMTools SNP 37646 37646 51.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C25%2C19%2C85%2C0%2C79:10 scaffold1858 SAMTools SNP 37992 37992 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold1858 SAMTools SNP 38033 38033 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1858 SAMTools SNP 38228 38228 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C16%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1.7e-08%2C1.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1858 SAMTools SNP 38690 38690 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1858 SAMTools SNP 39825 39825 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.027%2C4.7e-09%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1858 SAMTools SNP 40280 40280 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0014%2C0.19%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1858 SAMTools SNP 41309 41309 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1858 SAMTools SNP 41338 41338 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C7.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 41557 41557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C69%3BMQ%3D50%3BFQ%3D-221%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C194%2C0:99 scaffold1858 SAMTools SNP 41692 41692 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C52%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 42293 42293 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C0.032%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1858 SAMTools SNP 42468 42468 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1858 SAMTools SNP 42524 42524 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1858 SAMTools SNP 43379 43379 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C7%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.11%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1858 SAMTools SNP 43726 43726 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1858 SAMTools SNP 43732 43732 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.63%2C0.27%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1858 SAMTools SNP 43744 43744 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1858 SAMTools SNP 43861 43861 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 49180 49180 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 51370 51370 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1858 SAMTools SNP 51998 51998 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.033%2C0.021%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C207:59 scaffold1858 SAMTools SNP 52029 52029 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1858 SAMTools SNP 58498 58498 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1858 SAMTools SNP 58499 58499 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1858 SAMTools SNP 58977 58977 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.44%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 59013 59013 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1858 SAMTools SNP 59055 59055 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.25%2C1.1e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1858 SAMTools SNP 59065 59065 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1858 SAMTools SNP 59987 59987 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 60008 60008 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1858 SAMTools SNP 61795 61795 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C202:99 scaffold1858 SAMTools SNP 62752 62752 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.13%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1858 SAMTools SNP 62758 62758 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1858 SAMTools SNP 62798 62798 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 62847 62847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 67800 67800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 67844 67844 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 68753 68753 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1858 SAMTools SNP 70625 70625 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1858 SAMTools SNP 70635 70635 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1858 SAMTools SNP 70658 70658 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1858 SAMTools SNP 77221 77221 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.057%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C59:43 scaffold1858 SAMTools SNP 79299 79299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1858 SAMTools SNP 82587 82587 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1858 SAMTools SNP 86358 86358 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C72%2C0:99 scaffold1858 SAMTools SNP 89228 89228 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1858 SAMTools SNP 89285 89285 35.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold1858 SAMTools SNP 89696 89696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C2.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 90836 90836 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1858 SAMTools SNP 90839 90839 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1858 SAMTools SNP 95169 95169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1858 SAMTools SNP 100544 100544 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 100556 100556 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1858 SAMTools SNP 100568 100568 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1858 SAMTools SNP 100673 100673 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1858 SAMTools SNP 100676 100676 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1858 SAMTools SNP 114521 114521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C34%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.4%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 172306 172306 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 172626 172626 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 172713 172713 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 172753 172753 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold1858 SAMTools SNP 174172 174172 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C3.5e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C136:39 scaffold1858 SAMTools SNP 182840 182840 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 183158 183158 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1858 SAMTools SNP 183206 183206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1858 SAMTools SNP 183425 183425 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold1858 SAMTools SNP 183485 183485 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1858 SAMTools SNP 184584 184584 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1858 SAMTools SNP 184696 184696 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1858 SAMTools SNP 184706 184706 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1858 SAMTools SNP 184725 184725 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1858 SAMTools SNP 185621 185621 19.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold1858 SAMTools SNP 191436 191436 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold1858 SAMTools SNP 198561 198561 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1858 SAMTools SNP 198564 198564 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1858 SAMTools SNP 201025 201025 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C0.091%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold1858 SAMTools SNP 201045 201045 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1858 SAMTools SNP 201091 201091 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold1858 SAMTools SNP 201815 201815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1858 SAMTools SNP 201871 201871 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1858 SAMTools SNP 201917 201917 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.24%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C243:99 scaffold1858 SAMTools SNP 202309 202309 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1858 SAMTools SNP 202627 202627 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1858 SAMTools SNP 202946 202946 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold1858 SAMTools SNP 202947 202947 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.15%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1858 SAMTools SNP 203753 203753 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1858 SAMTools SNP 205347 205347 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold1858 SAMTools SNP 205367 205367 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold1858 SAMTools SNP 205551 205551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1858 SAMTools SNP 206217 206217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1858 SAMTools SNP 206241 206241 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1858 SAMTools SNP 206355 206355 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1858 SAMTools SNP 207489 207489 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1858 SAMTools SNP 207578 207578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C13%2C8%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1858 SAMTools SNP 208319 208319 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1858 SAMTools SNP 214940 214940 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1858 SAMTools SNP 220764 220764 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1858 SAMTools SNP 220776 220776 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1858 SAMTools SNP 221673 221673 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C30%2C0:57 scaffold1858 SAMTools SNP 223586 223586 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1858 SAMTools SNP 223648 223648 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.26%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C102:99 scaffold1858 SAMTools SNP 224345 224345 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1858 SAMTools SNP 224366 224366 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.045%2C0.02%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1858 SAMTools SNP 224887 224887 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1858 SAMTools SNP 225506 225506 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C78%2C0:99 scaffold1858 SAMTools SNP 225985 225985 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1858 SAMTools SNP 226328 226328 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1858 SAMTools SNP 226368 226368 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1858 SAMTools SNP 226886 226886 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1858 SAMTools SNP 227692 227692 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1858 SAMTools SNP 228566 228566 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C1%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1858 SAMTools SNP 229178 229178 8.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C0:4 scaffold1858 SAMTools SNP 231455 231455 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C51%2C0:99 scaffold1858 SAMTools SNP 231554 231554 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C30%2C0:57 scaffold1858 SAMTools SNP 232508 232508 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1858 SAMTools SNP 248393 248393 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 248579 248579 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1858 SAMTools SNP 248669 248669 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1858 SAMTools SNP 253690 253690 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1858 SAMTools SNP 253697 253697 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 420 420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 447 447 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 502 502 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C156:69 scaffold1859 SAMTools SNP 640 640 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold1859 SAMTools SNP 1376 1376 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold1859 SAMTools SNP 1920 1920 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C24%2C0:45 scaffold1859 SAMTools SNP 11440 11440 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 12001 12001 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 12025 12025 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 14002 14002 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold1859 SAMTools SNP 18579 18579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C26%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold1859 SAMTools SNP 19370 19370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 20031 20031 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1859 SAMTools SNP 20037 20037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1859 SAMTools SNP 20390 20390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1859 SAMTools SNP 20403 20403 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.0013%2C6.2e-05%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1859 SAMTools SNP 20917 20917 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.021%2C0.00096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1859 SAMTools SNP 20959 20959 92.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1859 SAMTools SNP 21055 21055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 23524 23524 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1859 SAMTools SNP 23990 23990 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1859 SAMTools SNP 51809 51809 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C6.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C178:58 scaffold1859 SAMTools SNP 51981 51981 41.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold1859 SAMTools SNP 52500 52500 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold1859 SAMTools SNP 52911 52911 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.16%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1859 SAMTools SNP 53253 53253 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold1859 SAMTools SNP 53255 53255 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1859 SAMTools SNP 53257 53257 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1859 SAMTools SNP 55064 55064 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1859 SAMTools SNP 61196 61196 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1859 SAMTools SNP 63390 63390 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1859 SAMTools SNP 63906 63906 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 67115 67115 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1859 SAMTools SNP 71738 71738 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold1859 SAMTools SNP 71739 71739 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C104:36 scaffold1859 SAMTools SNP 71823 71823 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.081%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C166:43 scaffold1859 SAMTools SNP 72715 72715 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1859 SAMTools SNP 73992 73992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1859 SAMTools SNP 75858 75858 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1859 SAMTools SNP 75894 75894 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 76087 76087 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.15%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1859 SAMTools SNP 78726 78726 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1859 SAMTools SNP 89092 89092 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1859 SAMTools SNP 109440 109440 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C66%2C0:99 scaffold1859 SAMTools SNP 113737 113737 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1859 SAMTools SNP 113981 113981 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 113983 113983 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 120510 120510 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C27%2C0:51 scaffold1859 SAMTools SNP 120578 120578 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1859 SAMTools SNP 120805 120805 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1859 SAMTools SNP 121029 121029 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 121792 121792 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C1%3BMQ%3D47%3BFQ%3D73%3BPV4%3D0.3%2C0.21%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1859 SAMTools SNP 122867 122867 53 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C169%2C255%2C0%2C235:81 scaffold1859 SAMTools SNP 122923 122923 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1859 SAMTools SNP 124379 124379 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1859 SAMTools SNP 131289 131289 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D38%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C63%2C0:99 scaffold1859 SAMTools SNP 131307 131307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D40%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1859 SAMTools SNP 131690 131690 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1859 SAMTools SNP 133887 133887 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1859 SAMTools SNP 133917 133917 133 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C86%2C74%2C164%2C0%2C158:21 scaffold1859 SAMTools SNP 134325 134325 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C26%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.17%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1859 SAMTools SNP 134683 134683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C22%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 134960 134960 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1859 SAMTools SNP 135003 135003 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C7%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 135502 135502 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 135827 135827 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C30%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.002%2C0.00089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1859 SAMTools SNP 136639 136639 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C27%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1859 SAMTools SNP 136759 136759 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.25%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C149:99 scaffold1859 SAMTools SNP 138132 138132 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C61%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.32%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 138555 138555 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C18%2C0:33 scaffold1859 SAMTools SNP 138582 138582 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D47%3BFQ%3D-45%3BPV4%3D0.11%2C0.29%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold1859 SAMTools SNP 140876 140876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1859 SAMTools SNP 140936 140936 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C4%2C2%3BMQ%3D48%3BFQ%3D10.4%3BPV4%3D0.16%2C1.2e-19%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1859 SAMTools SNP 140963 140963 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D47%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C178:99 scaffold1859 SAMTools SNP 142965 142965 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C1%2C11%3BMQ%3D44%3BFQ%3D22%3BPV4%3D0.07%2C0.0043%2C4.2e-12%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1859 SAMTools SNP 147521 147521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 147556 147556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1859 SAMTools SNP 147920 147920 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1859 SAMTools SNP 147964 147964 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1859 SAMTools SNP 148220 148220 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00049%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C237:48 scaffold1859 SAMTools SNP 148265 148265 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C230:37 scaffold1859 SAMTools SNP 148423 148423 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1859 SAMTools SNP 148429 148429 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C16%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold1859 SAMTools SNP 148575 148575 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1859 SAMTools SNP 148613 148613 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1859 SAMTools SNP 148633 148633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1859 SAMTools SNP 149169 149169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1859 SAMTools SNP 149191 149191 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1859 SAMTools SNP 149395 149395 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1859 SAMTools SNP 157478 157478 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C42%2C0:81 scaffold1859 SAMTools SNP 157576 157576 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1859 SAMTools SNP 157579 157579 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.058%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold1859 SAMTools SNP 159504 159504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1859 SAMTools SNP 159738 159738 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C28%2C17%2C28%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.055%2C2.6e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1859 SAMTools SNP 159825 159825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 161801 161801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 162152 162152 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold1859 SAMTools SNP 162224 162224 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C33%2C0:61 scaffold1859 SAMTools SNP 162338 162338 48.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.012%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold1859 SAMTools SNP 162416 162416 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1859 SAMTools SNP 162431 162431 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1859 SAMTools SNP 162638 162638 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D105%3BPV4%3D3.2e-05%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1859 SAMTools SNP 162718 162718 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C51%2C0:78 scaffold1859 SAMTools SNP 162833 162833 91.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C15%2C0:27 scaffold1859 SAMTools SNP 162959 162959 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C45%3BMQ%3D50%3BFQ%3D-232%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1859 SAMTools SNP 163020 163020 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C50%3BMQ%3D50%3BFQ%3D121%3BPV4%3D3.2e-07%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold1859 SAMTools SNP 163397 163397 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1859 SAMTools SNP 163424 163424 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.53%2C0.13%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1859 SAMTools SNP 163535 163535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 164250 164250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 164310 164310 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C20%2C14%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.036%2C0.13%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1859 SAMTools SNP 164700 164700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1859 SAMTools SNP 165285 165285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C58%2C1%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 165948 165948 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.34%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1859 SAMTools SNP 166457 166457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C59%2C10%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1859 SAMTools SNP 166938 166938 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0244%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1859 SAMTools SNP 166985 166985 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1859 SAMTools SNP 171674 171674 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C27%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.12%2C3.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C231:77 scaffold186 SAMTools SNP 10915 10915 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 10986 10986 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 11016 11016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 11544 11544 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold186 SAMTools SNP 11612 11612 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold186 SAMTools SNP 38867 38867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold186 SAMTools SNP 39981 39981 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.029%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C238:99 scaffold186 SAMTools SNP 40000 40000 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.018%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C212:99 scaffold186 SAMTools SNP 40588 40588 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 40638 40638 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 43365 43365 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 43403 43403 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold186 SAMTools SNP 44656 44656 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold186 SAMTools SNP 45156 45156 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C12%2C0%3BMQ%3D38%3BFQ%3D17.1%3BPV4%3D0.0087%2C0.081%2C0.00023%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold186 SAMTools SNP 45762 45762 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.08%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C172:42 scaffold186 SAMTools SNP 46180 46180 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold186 SAMTools SNP 46204 46204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold186 SAMTools SNP 46219 46219 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.068%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold186 SAMTools SNP 48705 48705 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.091%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold186 SAMTools SNP 48745 48745 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold186 SAMTools SNP 49162 49162 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C56%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 51317 51317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C127%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 51461 51461 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold186 SAMTools SNP 51469 51469 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold186 SAMTools SNP 52380 52380 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 53068 53068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.45%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 53086 53086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 53723 53723 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C12%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold186 SAMTools SNP 53958 53958 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C20%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 53997 53997 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 55172 55172 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold186 SAMTools SNP 55209 55209 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold186 SAMTools SNP 56200 56200 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.057%2C5.8e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold186 SAMTools SNP 56266 56266 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.66%2C0.0011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold186 SAMTools SNP 56666 56666 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold186 SAMTools SNP 58586 58586 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold186 SAMTools SNP 58818 58818 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 59078 59078 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold186 SAMTools SNP 59507 59507 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold186 SAMTools SNP 59786 59786 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00014%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C124:44 scaffold186 SAMTools SNP 60317 60317 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C43%2C8%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C3.2e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold186 SAMTools SNP 60658 60658 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold186 SAMTools SNP 60867 60867 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C72%2C0:99 scaffold186 SAMTools SNP 61070 61070 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C25%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.7e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C246:43 scaffold186 SAMTools SNP 61337 61337 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C21%2C0:39 scaffold186 SAMTools SNP 61415 61415 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C54%2C0:99 scaffold186 SAMTools SNP 61865 61865 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C19%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2.4e-33%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold186 SAMTools SNP 61970 61970 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold186 SAMTools SNP 62097 62097 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold186 SAMTools SNP 62318 62318 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold186 SAMTools SNP 62333 62333 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold186 SAMTools SNP 62477 62477 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.039%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold186 SAMTools SNP 62532 62532 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 62552 62552 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 62765 62765 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C1%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 62828 62828 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 63397 63397 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 63424 63424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 64461 64461 29.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold186 SAMTools SNP 73230 73230 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C4.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C108:87 scaffold186 SAMTools SNP 73366 73366 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold186 SAMTools SNP 73456 73456 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C60%2C0:99 scaffold186 SAMTools SNP 73681 73681 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C1%2C9%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold186 SAMTools SNP 73732 73732 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 88355 88355 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C81%2C0:99 scaffold186 SAMTools SNP 92018 92018 9.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0367%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C14:18 scaffold186 SAMTools SNP 92040 92040 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1268%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C422%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 111211 111211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C50%2C349%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 111989 111989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold186 SAMTools SNP 112016 112016 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C28%3BMQ%3D49%3BFQ%3D-130%3BPV4%3D0.42%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C103%2C0:99 scaffold186 SAMTools SNP 112991 112991 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C7%3BMQ%3D46%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold186 SAMTools SNP 113007 113007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D45%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold186 SAMTools SNP 113610 113610 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C17%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.014%2C0.4%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 116988 116988 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 117329 117329 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold186 SAMTools SNP 119159 119159 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold186 SAMTools SNP 126639 126639 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold186 SAMTools SNP 126655 126655 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold186 SAMTools SNP 126678 126678 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 126705 126705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C285%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 126990 126990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D290%2C103%2C91%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.00031%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 127218 127218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D629%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C340%2C47%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 127291 127291 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C78%2C74%2C229%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 127566 127566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C95%2C130%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C5.2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 127599 127599 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D429%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C81%2C45%2C10%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.05%2C0.00015%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold186 SAMTools SNP 127968 127968 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C228%2C335%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 128025 128025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D782%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C359%2C95%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.51%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 128867 128867 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2421%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C657%2C787%2C204%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-152%2C0.29%2C1%2C1.8e-229;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 128915 128915 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1858%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C371%2C831%2C446%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-36%2C7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 133985 133985 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C4%2C1%3BMQ%3D47%3BFQ%3D30%3BPV4%3D0.35%2C0.044%2C0.26%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C235:60 scaffold186 SAMTools SNP 134005 134005 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D49%3BFQ%3D90%3BPV4%3D1%2C0.0038%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C213:99 scaffold186 SAMTools SNP 134018 134018 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D49%3BFQ%3D34%3BPV4%3D1%2C0.0045%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold186 SAMTools SNP 134300 134300 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C90%2C82%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.5%2C8.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 134990 134990 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold186 SAMTools SNP 135092 135092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C3%3BMQ%3D49%3BFQ%3D128%3BPV4%3D0.52%2C1%2C0.26%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold186 SAMTools SNP 135543 135543 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold186 SAMTools SNP 135630 135630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C6%2C84%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 136015 136015 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C97%2C80%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-22%2C1%2C1%2C8.5e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 136066 136066 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C11%2C289%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 136243 136243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C124%2C48%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 136968 136968 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C296%2C0%2C183%3BMQ%3D50%3BFQ%3D116%3BPV4%3D8.2e-08%2C4e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold186 SAMTools SNP 137453 137453 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C49%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C6.4e-07%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 137456 137456 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C21%2C5%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.7%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold186 SAMTools SNP 137504 137504 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.15%2C2.2e-15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold186 SAMTools SNP 137991 137991 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C19%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 138012 138012 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C29%2C4%2C6%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold186 SAMTools SNP 138120 138120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 138407 138407 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C9%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.44%2C0.46%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold186 SAMTools SNP 138455 138455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C38%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.13%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 138866 138866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C50%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 139299 139299 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold186 SAMTools SNP 139707 139707 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C16%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold186 SAMTools SNP 140208 140208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C315%2C48%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 140307 140307 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold186 SAMTools SNP 140858 140858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold186 SAMTools SNP 140912 140912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C187%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 141535 141535 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold186 SAMTools SNP 141551 141551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 146561 146561 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold186 SAMTools SNP 147543 147543 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 147606 147606 32.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold186 SAMTools SNP 151153 151153 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold186 SAMTools SNP 167378 167378 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold186 SAMTools SNP 167552 167552 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold186 SAMTools SNP 169249 169249 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.42%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C221:99 scaffold186 SAMTools SNP 169284 169284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 171343 171343 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C13%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.39%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold186 SAMTools SNP 171349 171349 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C9%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.054%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold186 SAMTools SNP 171373 171373 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C178%2C0:99 scaffold186 SAMTools SNP 171394 171394 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C68%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C226%2C0:99 scaffold186 SAMTools SNP 171525 171525 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C24%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C157%2C0:99 scaffold186 SAMTools SNP 171683 171683 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold186 SAMTools SNP 172060 172060 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C51%2C0:99 scaffold186 SAMTools SNP 176972 176972 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold186 SAMTools SNP 178058 178058 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold186 SAMTools SNP 180888 180888 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold186 SAMTools SNP 182015 182015 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold186 SAMTools SNP 182018 182018 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold186 SAMTools SNP 182157 182157 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold186 SAMTools SNP 197100 197100 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold186 SAMTools SNP 200510 200510 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 200636 200636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C56%2C33%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 200675 200675 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C59%2C140%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 201064 201064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C94%2C98%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 201529 201529 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.087%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold186 SAMTools SNP 201835 201835 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C246:99 scaffold186 SAMTools SNP 201892 201892 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 204435 204435 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.00016%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold186 SAMTools SNP 204489 204489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold186 SAMTools SNP 204534 204534 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C27%2C0:51 scaffold186 SAMTools SNP 204548 204548 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold186 SAMTools SNP 204553 204553 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.17%2C0.0019%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold186 SAMTools SNP 205999 205999 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C105:99 scaffold186 SAMTools SNP 206006 206006 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold186 SAMTools SNP 206997 206997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 207484 207484 58.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold186 SAMTools SNP 207564 207564 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.48%2C8.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold186 SAMTools SNP 227713 227713 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C9%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold186 SAMTools SNP 227726 227726 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C10%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold186 SAMTools SNP 230484 230484 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold186 SAMTools SNP 234629 234629 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C28%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold186 SAMTools SNP 234654 234654 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C36%2C0%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold186 SAMTools SNP 234833 234833 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 235844 235844 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 235928 235928 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold186 SAMTools SNP 236126 236126 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C48%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 236156 236156 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C4%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.018%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold186 SAMTools SNP 236225 236225 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C20%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C157%2C0:99 scaffold186 SAMTools SNP 236283 236283 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C3%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.32%2C0.27%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold186 SAMTools SNP 236755 236755 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold186 SAMTools SNP 236775 236775 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C223:99 scaffold186 SAMTools SNP 236787 236787 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold186 SAMTools SNP 236793 236793 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold186 SAMTools SNP 236853 236853 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold186 SAMTools SNP 236992 236992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold186 SAMTools SNP 237025 237025 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold186 SAMTools SNP 237034 237034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold186 SAMTools SNP 237603 237603 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 237645 237645 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.17%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold186 SAMTools SNP 237678 237678 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.11%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C135:99 scaffold186 SAMTools SNP 237735 237735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold186 SAMTools SNP 238303 238303 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold186 SAMTools SNP 239345 239345 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold186 SAMTools SNP 243971 243971 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold186 SAMTools SNP 244876 244876 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.057%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold186 SAMTools SNP 277267 277267 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold186 SAMTools SNP 309014 309014 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold186 SAMTools SNP 310839 310839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 311123 311123 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold186 SAMTools SNP 311227 311227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold186 SAMTools SNP 311283 311283 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C21%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold186 SAMTools SNP 311638 311638 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C0%2C22%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00023%2C3.3e-21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold186 SAMTools SNP 312038 312038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold186 SAMTools SNP 312103 312103 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold186 SAMTools SNP 312130 312130 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold186 SAMTools SNP 321153 321153 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold186 SAMTools SNP 321570 321570 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.064%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold186 SAMTools SNP 328614 328614 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold186 SAMTools SNP 329947 329947 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1860 SAMTools SNP 5515 5515 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 5611 5611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 5676 5676 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 6102 6102 31.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold1860 SAMTools SNP 6692 6692 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C63%2C0:99 scaffold1860 SAMTools SNP 7235 7235 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C110:37 scaffold1860 SAMTools SNP 7751 7751 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C73:76 scaffold1860 SAMTools SNP 8496 8496 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C120%2C0:99 scaffold1860 SAMTools SNP 19272 19272 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D0.2%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold1860 SAMTools SNP 20469 20469 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1860 SAMTools SNP 21109 21109 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1860 SAMTools SNP 21389 21389 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C30%2C0:57 scaffold1860 SAMTools SNP 21683 21683 12.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1860 SAMTools SNP 36212 36212 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 36522 36522 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1860 SAMTools SNP 36565 36565 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1860 SAMTools SNP 36569 36569 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1860 SAMTools SNP 40393 40393 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1860 SAMTools SNP 40846 40846 59.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold1860 SAMTools SNP 41566 41566 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.057%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C122:66 scaffold1860 SAMTools SNP 48715 48715 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 49604 49604 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1860 SAMTools SNP 59445 59445 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1860 SAMTools SNP 60677 60677 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 61086 61086 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.071%2C0.00032%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1860 SAMTools SNP 61333 61333 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C15%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.13%2C8.1e-28%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C152:64 scaffold1860 SAMTools SNP 61504 61504 81 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C21%2C12%2C110%2C0%2C107:16 scaffold1860 SAMTools SNP 69283 69283 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.054%2C7.6e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold1860 SAMTools SNP 69293 69293 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.011%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1860 SAMTools SNP 69311 69311 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C248:70 scaffold1860 SAMTools SNP 69318 69318 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.016%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1860 SAMTools SNP 69800 69800 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 70893 70893 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 72597 72597 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C21%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.086%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1860 SAMTools SNP 72623 72623 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 73059 73059 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.35%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1860 SAMTools SNP 73173 73173 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C42%2C0:81 scaffold1860 SAMTools SNP 82350 82350 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 88681 88681 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1860 SAMTools SNP 115894 115894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1860 SAMTools SNP 115912 115912 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1860 SAMTools SNP 116662 116662 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1860 SAMTools SNP 116665 116665 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 116673 116673 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1860 SAMTools SNP 117252 117252 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1860 SAMTools SNP 117277 117277 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold1860 SAMTools SNP 117528 117528 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 118119 118119 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.014%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1860 SAMTools SNP 118353 118353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1860 SAMTools SNP 118637 118637 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1860 SAMTools SNP 118742 118742 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1860 SAMTools SNP 119077 119077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1860 SAMTools SNP 120656 120656 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 120953 120953 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.58%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C173:99 scaffold1860 SAMTools SNP 121376 121376 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1860 SAMTools SNP 122291 122291 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1860 SAMTools SNP 125210 125210 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1860 SAMTools SNP 125493 125493 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1860 SAMTools SNP 125800 125800 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1860 SAMTools SNP 125963 125963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1860 SAMTools SNP 125984 125984 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 126092 126092 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C51%2C0:99 scaffold1860 SAMTools SNP 126227 126227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 126278 126278 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 127258 127258 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 127259 127259 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 127762 127762 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 127768 127768 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 128314 128314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1860 SAMTools SNP 128341 128341 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1860 SAMTools SNP 128344 128344 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C234:73 scaffold1860 SAMTools SNP 128377 128377 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1860 SAMTools SNP 128897 128897 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 129107 129107 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 129122 129122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 129206 129206 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1860 SAMTools SNP 129209 129209 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 131316 131316 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1860 SAMTools SNP 131335 131335 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.62%2C0.013%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1860 SAMTools SNP 131735 131735 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1860 SAMTools SNP 131738 131738 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1860 SAMTools SNP 131744 131744 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C0.083%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C150:99 scaffold1860 SAMTools SNP 131843 131843 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.017%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1860 SAMTools SNP 133158 133158 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.71%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1860 SAMTools SNP 133200 133200 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 133254 133254 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 133760 133760 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C7%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0033%2C1.6e-13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1860 SAMTools SNP 135267 135267 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.48%2C0.15%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold1860 SAMTools SNP 135291 135291 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1860 SAMTools SNP 135309 135309 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1860 SAMTools SNP 135336 135336 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1860 SAMTools SNP 135339 135339 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1860 SAMTools SNP 136807 136807 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1860 SAMTools SNP 136854 136854 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold1860 SAMTools SNP 150867 150867 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.046%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1860 SAMTools SNP 152032 152032 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 152094 152094 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1860 SAMTools SNP 155783 155783 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1860 SAMTools SNP 155842 155842 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1860 SAMTools SNP 158016 158016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C12%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold1860 SAMTools SNP 158318 158318 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.13%2C0.0075%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1860 SAMTools SNP 158351 158351 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.46%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1860 SAMTools SNP 158546 158546 48.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C3.2e-08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C14:17 scaffold1860 SAMTools SNP 158600 158600 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C30%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C43%2C0:83 scaffold1860 SAMTools SNP 158642 158642 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1860 SAMTools SNP 159829 159829 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1860 SAMTools SNP 159928 159928 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold1860 SAMTools SNP 159973 159973 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 159988 159988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C7%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1860 SAMTools SNP 160915 160915 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.14%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1860 SAMTools SNP 160932 160932 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C174:99 scaffold1860 SAMTools SNP 160965 160965 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold1860 SAMTools SNP 161127 161127 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold1860 SAMTools SNP 161164 161164 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1860 SAMTools SNP 161683 161683 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 161707 161707 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1860 SAMTools SNP 161716 161716 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1860 SAMTools SNP 162113 162113 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C24%2C0:45 scaffold1860 SAMTools SNP 162785 162785 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1860 SAMTools SNP 163533 163533 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1860 SAMTools SNP 165709 165709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C67%2C2%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 166481 166481 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C14%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1860 SAMTools SNP 166529 166529 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C5%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1860 SAMTools SNP 167362 167362 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D676%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C18%2C0:33 scaffold1860 SAMTools SNP 167610 167610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C200%2C43%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 167628 167628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C48%2C51%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 168041 168041 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1860 SAMTools SNP 168043 168043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1860 SAMTools SNP 168175 168175 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1860 SAMTools SNP 168430 168430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D938%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C742%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1860 SAMTools SNP 172979 172979 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1860 SAMTools SNP 172988 172988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1860 SAMTools SNP 173072 173072 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 173102 173102 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1860 SAMTools SNP 173538 173538 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1860 SAMTools SNP 173546 173546 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1860 SAMTools SNP 173583 173583 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1860 SAMTools SNP 173610 173610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1860 SAMTools SNP 174304 174304 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.63%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1860 SAMTools SNP 174328 174328 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.61%2C0.36%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold1860 SAMTools SNP 175001 175001 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1860 SAMTools SNP 175055 175055 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold1860 SAMTools SNP 175066 175066 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold1860 SAMTools SNP 175076 175076 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold1860 SAMTools SNP 177014 177014 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1860 SAMTools SNP 177032 177032 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C197:99 scaffold1860 SAMTools SNP 178256 178256 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.44%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1860 SAMTools SNP 178676 178676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C29%2C17%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold1860 SAMTools SNP 179450 179450 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C27%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C128:99 scaffold1860 SAMTools SNP 179459 179459 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0011%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C231:96 scaffold1860 SAMTools SNP 179462 179462 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0011%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C231:96 scaffold1860 SAMTools SNP 179552 179552 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 180059 180059 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 180636 180636 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold1860 SAMTools SNP 180648 180648 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold1860 SAMTools SNP 180783 180783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1860 SAMTools SNP 181287 181287 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.63%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1860 SAMTools SNP 181305 181305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1860 SAMTools SNP 181407 181407 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 181420 181420 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.026%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1860 SAMTools SNP 182258 182258 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1860 SAMTools SNP 182788 182788 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C254:99 scaffold1860 SAMTools SNP 182809 182809 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1860 SAMTools SNP 183642 183642 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C13%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1860 SAMTools SNP 184168 184168 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.58%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1860 SAMTools SNP 184204 184204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1860 SAMTools SNP 186758 186758 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.19%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold1860 SAMTools SNP 186920 186920 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C54%2C0:99 scaffold1860 SAMTools SNP 190198 190198 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 192607 192607 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1860 SAMTools SNP 194235 194235 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D5.95%3BPV4%3D1%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C32:35 scaffold1860 SAMTools SNP 194301 194301 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1860 SAMTools SNP 194358 194358 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold1860 SAMTools SNP 196520 196520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 198628 198628 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 199328 199328 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1860 SAMTools SNP 199752 199752 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1860 SAMTools SNP 200164 200164 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C1%2C0.19%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 200168 200168 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C4%2C6%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.07%2C0.09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold1860 SAMTools SNP 201205 201205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 202326 202326 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C2%2C1%3BMQ%3D49%3BFQ%3D35%3BPV4%3D0.47%2C0.3%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1860 SAMTools SNP 202332 202332 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1860 SAMTools SNP 202362 202362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1860 SAMTools SNP 203145 203145 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C9%2C89%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.25%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 203178 203178 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C38%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 203292 203292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 203996 203996 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C27%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 204065 204065 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.53%2C0.0016%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1860 SAMTools SNP 204068 204068 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C0%2C15%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.014%2C5.5e-08%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1860 SAMTools SNP 204334 204334 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C2%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.019%2C0.086%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C226:99 scaffold1860 SAMTools SNP 204335 204335 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.021%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C229:99 scaffold1860 SAMTools SNP 204380 204380 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.011%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C235:99 scaffold1860 SAMTools SNP 204479 204479 25.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1860 SAMTools SNP 204563 204563 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C72%2C0:99 scaffold1860 SAMTools SNP 204742 204742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C24%2C64%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 204801 204801 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0367%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.78%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold1860 SAMTools SNP 207726 207726 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C29:32 scaffold1860 SAMTools SNP 207727 207727 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 207824 207824 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1860 SAMTools SNP 208322 208322 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C14%3BMQ%3D40%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1860 SAMTools SNP 208350 208350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C19%2C9%3BMQ%3D35%3BFQ%3D225%3BPV4%3D0.77%2C1%2C0.44%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1860 SAMTools SNP 208392 208392 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C11%2C13%3BMQ%3D30%3BFQ%3D128%3BPV4%3D0.78%2C0.0095%2C0.22%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C190:99 scaffold1860 SAMTools SNP 208779 208779 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C4%2C17%3BMQ%3D31%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C176:99 scaffold1860 SAMTools SNP 208809 208809 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C3%2C22%3BMQ%3D27%3BFQ%3D170%3BPV4%3D0.66%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C198:99 scaffold1860 SAMTools SNP 211261 211261 73 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold1860 SAMTools SNP 211608 211608 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 217804 217804 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C12%3BMQ%3D42%3BFQ%3D210%3BPV4%3D1%2C0.42%2C0.081%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C242:99 scaffold1860 SAMTools SNP 221064 221064 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D28%3BFQ%3D50%3BPV4%3D0.6%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C77:80 scaffold1860 SAMTools SNP 221197 221197 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold1860 SAMTools SNP 222899 222899 14.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1860 SAMTools SNP 223140 223140 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C132:37 scaffold1860 SAMTools SNP 223196 223196 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 223528 223528 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1860 SAMTools SNP 223543 223543 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C185:74 scaffold1860 SAMTools SNP 224626 224626 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 224911 224911 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1860 SAMTools SNP 225561 225561 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold1860 SAMTools SNP 225719 225719 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C196:99 scaffold1860 SAMTools SNP 225749 225749 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C81:84 scaffold1860 SAMTools SNP 227048 227048 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1860 SAMTools SNP 227963 227963 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1860 SAMTools SNP 257718 257718 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1860 SAMTools SNP 302867 302867 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1860 SAMTools SNP 303180 303180 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 305225 305225 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1860 SAMTools SNP 305481 305481 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 324181 324181 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C51%2C0:83 scaffold1860 SAMTools SNP 324244 324244 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C51%2C0:98 scaffold1860 SAMTools SNP 331578 331578 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 331600 331600 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 342605 342605 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1860 SAMTools SNP 345330 345330 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold1860 SAMTools SNP 368384 368384 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1860 SAMTools SNP 371608 371608 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1861 SAMTools SNP 6102 6102 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1861 SAMTools SNP 7824 7824 40.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold1861 SAMTools SNP 8061 8061 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C114:99 scaffold1861 SAMTools SNP 8071 8071 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1861 SAMTools SNP 8128 8128 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1861 SAMTools SNP 8155 8155 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.3%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C247:99 scaffold1861 SAMTools SNP 8182 8182 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.00041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C178:99 scaffold1861 SAMTools SNP 8455 8455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1861 SAMTools SNP 8496 8496 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1861 SAMTools SNP 8527 8527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1861 SAMTools SNP 8542 8542 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.13%2C1%2C8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1861 SAMTools SNP 8569 8569 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1861 SAMTools SNP 9521 9521 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0021%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold1861 SAMTools SNP 9539 9539 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1861 SAMTools SNP 9551 9551 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold1861 SAMTools SNP 10272 10272 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1861 SAMTools SNP 10307 10307 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1861 SAMTools SNP 11160 11160 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1861 SAMTools SNP 16540 16540 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1861 SAMTools SNP 33647 33647 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1861 SAMTools SNP 35024 35024 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1861 SAMTools SNP 43065 43065 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold1861 SAMTools SNP 51821 51821 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1861 SAMTools SNP 54369 54369 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1861 SAMTools SNP 69495 69495 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 418 418 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 484 484 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold1862 SAMTools SNP 1448 1448 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 1472 1472 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 1490 1490 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 1496 1496 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1862 SAMTools SNP 2241 2241 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1862 SAMTools SNP 2299 2299 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1862 SAMTools SNP 3665 3665 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1862 SAMTools SNP 4105 4105 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1862 SAMTools SNP 4700 4700 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 9788 9788 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1862 SAMTools SNP 10815 10815 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 10818 10818 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 11645 11645 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold1862 SAMTools SNP 12585 12585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1862 SAMTools SNP 12672 12672 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1862 SAMTools SNP 15402 15402 12.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold1862 SAMTools SNP 15462 15462 47.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold1862 SAMTools SNP 15584 15584 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1862 SAMTools SNP 15660 15660 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold1862 SAMTools SNP 15723 15723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1862 SAMTools SNP 15753 15753 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C35%2C7%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.24%2C0.24%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C78:81 scaffold1862 SAMTools SNP 16282 16282 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0075%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1862 SAMTools SNP 16381 16381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 17733 17733 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.29%2C0.00083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold1862 SAMTools SNP 17754 17754 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1862 SAMTools SNP 17820 17820 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1862 SAMTools SNP 18302 18302 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1862 SAMTools SNP 18341 18341 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 18968 18968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C6.3e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 19025 19025 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.53%2C0.039%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1862 SAMTools SNP 19067 19067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C26%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1862 SAMTools SNP 19950 19950 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C102:99 scaffold1862 SAMTools SNP 20825 20825 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 21441 21441 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.32%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold1862 SAMTools SNP 21456 21456 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.34%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1862 SAMTools SNP 21471 21471 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D4.3e-06%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1862 SAMTools SNP 21849 21849 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C1%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1862 SAMTools SNP 21856 21856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C13%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0016%2C0.00029%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold1862 SAMTools SNP 21897 21897 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold1862 SAMTools SNP 21921 21921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1862 SAMTools SNP 23327 23327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1862 SAMTools SNP 23351 23351 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C33%2C0:62 scaffold1862 SAMTools SNP 23363 23363 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C45%2C0:85 scaffold1862 SAMTools SNP 62204 62204 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 62208 62208 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 62349 62349 28.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold1862 SAMTools SNP 62383 62383 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1862 SAMTools SNP 113392 113392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1862 SAMTools SNP 113401 113401 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1862 SAMTools SNP 114132 114132 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C13%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1862 SAMTools SNP 114264 114264 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold1862 SAMTools SNP 114279 114279 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1862 SAMTools SNP 115041 115041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1862 SAMTools SNP 115083 115083 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C59%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 115414 115414 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C137%2C47%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C5.4e-07%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 115571 115571 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C172%2C12%2C187%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 115691 115691 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C36%2C20%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.034%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1862 SAMTools SNP 115990 115990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C8%2C36%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.00015%2C4e-07%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 116002 116002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C55%2C15%2C38%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.53%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 116020 116020 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C14%2C38%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.54%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 116329 116329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C101%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-09%2C3.9e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 116335 116335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1862 SAMTools SNP 116814 116814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C214%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1862 SAMTools SNP 120166 120166 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C1%2C13%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0082%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1862 SAMTools SNP 121157 121157 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0012%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1862 SAMTools SNP 123762 123762 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C191:72 scaffold1862 SAMTools SNP 123792 123792 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C150:99 scaffold1862 SAMTools SNP 123873 123873 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.13%2C5.8e-15%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1862 SAMTools SNP 123907 123907 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C72%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.8e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1862 SAMTools SNP 123913 123913 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C3%2C37%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C7.7e-71%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1862 SAMTools SNP 124431 124431 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C231:99 scaffold1862 SAMTools SNP 124683 124683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1862 SAMTools SNP 124818 124818 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1862 SAMTools SNP 124823 124823 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1862 SAMTools SNP 125384 125384 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1862 SAMTools SNP 125873 125873 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.048%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1862 SAMTools SNP 125891 125891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.063%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold1862 SAMTools SNP 125909 125909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1862 SAMTools SNP 126369 126369 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1862 SAMTools SNP 127388 127388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1862 SAMTools SNP 127762 127762 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 127774 127774 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1862 SAMTools SNP 127816 127816 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.098%2C0.4%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1862 SAMTools SNP 130836 130836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 130868 130868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1862 SAMTools SNP 133504 133504 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold1862 SAMTools SNP 133992 133992 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C41%2C80%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 137412 137412 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 137921 137921 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1862 SAMTools SNP 139823 139823 103 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold1862 SAMTools SNP 140253 140253 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1862 SAMTools SNP 140743 140743 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 163867 163867 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 163974 163974 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1862 SAMTools SNP 175245 175245 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 175248 175248 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 175518 175518 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1862 SAMTools SNP 175539 175539 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 178191 178191 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 178242 178242 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 178296 178296 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 178741 178741 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 193901 193901 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1862 SAMTools SNP 194003 194003 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1862 SAMTools SNP 209128 209128 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C256%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1862 SAMTools SNP 216473 216473 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 216512 216512 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 236524 236524 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C167:99 scaffold1862 SAMTools SNP 236557 236557 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1862 SAMTools SNP 237489 237489 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C54%2C0:99 scaffold1862 SAMTools SNP 237650 237650 51.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1862 SAMTools SNP 237892 237892 37.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold1862 SAMTools SNP 242522 242522 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold1862 SAMTools SNP 242591 242591 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C2%3BMQ%3D49%3BFQ%3D63%3BPV4%3D0.58%2C5.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C163:93 scaffold1862 SAMTools SNP 242651 242651 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1862 SAMTools SNP 242678 242678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1862 SAMTools SNP 243351 243351 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1862 SAMTools SNP 243365 243365 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1862 SAMTools SNP 243567 243567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1862 SAMTools SNP 245641 245641 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0221%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1862 SAMTools SNP 245720 245720 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1862 SAMTools SNP 249344 249344 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 251348 251348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C4%2C68%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C6.9e-13%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 252266 252266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C62%2C16%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 252311 252311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C47%2C19%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.29%2C0.009%2C1%2C6.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1862 SAMTools SNP 252644 252644 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1862 SAMTools SNP 253850 253850 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C111%2C0:99 scaffold1862 SAMTools SNP 253872 253872 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C102%2C0:99 scaffold1862 SAMTools SNP 254162 254162 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C12%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C132%2C0:99 scaffold1862 SAMTools SNP 254299 254299 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C58%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1862 SAMTools SNP 254453 254453 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.95%3BPV4%3D0.17%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C32:35 scaffold1862 SAMTools SNP 254746 254746 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1862 SAMTools SNP 255499 255499 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold1862 SAMTools SNP 255645 255645 56.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold1862 SAMTools SNP 261616 261616 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1862 SAMTools SNP 262567 262567 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C2%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 262577 262577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C5%2C53%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.11%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 262597 262597 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C24%2C16%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-08%2C0.16%2C1%2C6.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 262624 262624 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C61%2C40%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-09%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 264433 264433 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 266183 266183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C51%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1862 SAMTools SNP 266204 266204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 266707 266707 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 266732 266732 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 266738 266738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 267514 267514 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1862 SAMTools SNP 267520 267520 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 270803 270803 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold1862 SAMTools SNP 296027 296027 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 296224 296224 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1862 SAMTools SNP 296245 296245 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1862 SAMTools SNP 296963 296963 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1862 SAMTools SNP 305882 305882 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1862 SAMTools SNP 306084 306084 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 307302 307302 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold1862 SAMTools SNP 307315 307315 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 328788 328788 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 331823 331823 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0044%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1862 SAMTools SNP 347050 347050 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1862 SAMTools SNP 353204 353204 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1862 SAMTools SNP 353209 353209 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1862 SAMTools SNP 392810 392810 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D858%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C210%2C278%2C204%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-05%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 392902 392902 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2228%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D738%2C282%2C920%2C129%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1.4e-18%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1862 SAMTools SNP 407917 407917 90.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold1862 SAMTools SNP 407934 407934 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C167:57 scaffold1862 SAMTools SNP 409139 409139 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1862 SAMTools SNP 409951 409951 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C46%2C12%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1862 SAMTools SNP 434531 434531 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 451532 451532 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 451550 451550 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 460381 460381 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 461355 461355 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1862 SAMTools SNP 461388 461388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.071%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 462461 462461 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1862 SAMTools SNP 463444 463444 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1862 SAMTools SNP 463823 463823 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1862 SAMTools SNP 467005 467005 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1862 SAMTools SNP 468306 468306 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1862 SAMTools SNP 468648 468648 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 468705 468705 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1.5e-05%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C239:99 scaffold1862 SAMTools SNP 468887 468887 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 471767 471767 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1862 SAMTools SNP 484128 484128 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1862 SAMTools SNP 492565 492565 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1862 SAMTools SNP 501523 501523 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 503162 503162 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1862 SAMTools SNP 506118 506118 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1862 SAMTools SNP 506523 506523 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.27%2C3.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1862 SAMTools SNP 506748 506748 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.44%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C54:57 scaffold1862 SAMTools SNP 506883 506883 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1862 SAMTools SNP 507104 507104 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.18%2C0.0011%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1862 SAMTools SNP 507210 507210 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C5.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1862 SAMTools SNP 507444 507444 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0088%2C1.5e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1862 SAMTools SNP 507666 507666 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.59%2C6.5e-09%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C163:99 scaffold1862 SAMTools SNP 510148 510148 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold1862 SAMTools SNP 513315 513315 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 513318 513318 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.64%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1862 SAMTools SNP 513411 513411 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1862 SAMTools SNP 516150 516150 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1862 SAMTools SNP 516162 516162 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold1862 SAMTools SNP 516574 516574 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1862 SAMTools SNP 518918 518918 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.031%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold1862 SAMTools SNP 521093 521093 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1862 SAMTools SNP 521357 521357 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.2%2C1.1e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C225:43 scaffold1862 SAMTools SNP 522667 522667 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.53%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1862 SAMTools SNP 523441 523441 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C254:99 scaffold1862 SAMTools SNP 523444 523444 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C206:99 scaffold1862 SAMTools SNP 523456 523456 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.2%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C197:99 scaffold1862 SAMTools SNP 523510 523510 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.085%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 525054 525054 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1862 SAMTools SNP 525156 525156 28.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold1862 SAMTools SNP 525304 525304 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold1862 SAMTools SNP 530120 530120 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1862 SAMTools SNP 530704 530704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1862 SAMTools SNP 530736 530736 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C202:99 scaffold1862 SAMTools SNP 531100 531100 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.46%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold1862 SAMTools SNP 531392 531392 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1862 SAMTools SNP 531407 531407 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 531433 531433 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1862 SAMTools SNP 534037 534037 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold1862 SAMTools SNP 543234 543234 28.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D0.4%2C0.026%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C10:13 scaffold1862 SAMTools SNP 544397 544397 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.039%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1862 SAMTools SNP 544595 544595 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1862 SAMTools SNP 552486 552486 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 553777 553777 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 556339 556339 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 557409 557409 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C7.4e-36%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C236:37 scaffold1862 SAMTools SNP 557867 557867 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C7.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold1862 SAMTools SNP 558149 558149 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1862 SAMTools SNP 560795 560795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 561261 561261 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1862 SAMTools SNP 561279 561279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1862 SAMTools SNP 566326 566326 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 566671 566671 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1862 SAMTools SNP 566697 566697 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1862 SAMTools SNP 566730 566730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C70%2C1%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D0.028%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold1862 SAMTools SNP 566745 566745 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C2%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1862 SAMTools SNP 568667 568667 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 568706 568706 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1862 SAMTools SNP 568802 568802 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C26%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1862 SAMTools SNP 569661 569661 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1862 SAMTools SNP 569666 569666 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1862 SAMTools SNP 569681 569681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1862 SAMTools SNP 570219 570219 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1862 SAMTools SNP 570299 570299 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C9%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C5.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1862 SAMTools SNP 570316 570316 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C4e-16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1862 SAMTools SNP 609988 609988 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold1862 SAMTools SNP 609993 609993 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1862 SAMTools SNP 610014 610014 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1862 SAMTools SNP 610041 610041 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1862 SAMTools SNP 610058 610058 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1862 SAMTools SNP 610064 610064 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1862 SAMTools SNP 616906 616906 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 616911 616911 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1862 SAMTools SNP 616923 616923 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1862 SAMTools SNP 616964 616964 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1862 SAMTools SNP 617922 617922 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 618297 618297 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C169:99 scaffold1862 SAMTools SNP 619427 619427 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 619454 619454 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1862 SAMTools SNP 621065 621065 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C9%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.00016%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1862 SAMTools SNP 621968 621968 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1862 SAMTools SNP 621988 621988 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1862 SAMTools SNP 622023 622023 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1862 SAMTools SNP 622062 622062 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1862 SAMTools SNP 622072 622072 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1862 SAMTools SNP 622677 622677 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C189:99 scaffold1862 SAMTools SNP 623710 623710 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1862 SAMTools SNP 623729 623729 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0076%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C88:52 scaffold1862 SAMTools SNP 627875 627875 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1862 SAMTools SNP 627877 627877 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1862 SAMTools SNP 627901 627901 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1862 SAMTools SNP 627916 627916 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold1862 SAMTools SNP 629761 629761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1862 SAMTools SNP 629873 629873 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1862 SAMTools SNP 629876 629876 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1862 SAMTools SNP 631317 631317 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C1.5e-05%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1862 SAMTools SNP 631332 631332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1862 SAMTools SNP 631386 631386 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1862 SAMTools SNP 631401 631401 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold1862 SAMTools SNP 631404 631404 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1862 SAMTools SNP 632088 632088 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.29%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1862 SAMTools SNP 632488 632488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1862 SAMTools SNP 633300 633300 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C14%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold1862 SAMTools SNP 633325 633325 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1862 SAMTools SNP 633620 633620 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.12%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1862 SAMTools SNP 633621 633621 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.12%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1862 SAMTools SNP 633681 633681 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.054%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1862 SAMTools SNP 633879 633879 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1862 SAMTools SNP 633888 633888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 633900 633900 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1862 SAMTools SNP 633919 633919 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C37:37 scaffold1862 SAMTools SNP 634373 634373 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1862 SAMTools SNP 634466 634466 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 635351 635351 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C36%3BMQ%3D49%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1862 SAMTools SNP 635385 635385 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.27%2C0.2%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1862 SAMTools SNP 636186 636186 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1862 SAMTools SNP 636812 636812 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1862 SAMTools SNP 636821 636821 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1862 SAMTools SNP 636975 636975 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1862 SAMTools SNP 636982 636982 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 636992 636992 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 638622 638622 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1862 SAMTools SNP 638724 638724 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1862 SAMTools SNP 638727 638727 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1862 SAMTools SNP 639077 639077 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1862 SAMTools SNP 639345 639345 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C2.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1862 SAMTools SNP 639779 639779 33.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1862 SAMTools SNP 639923 639923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1862 SAMTools SNP 661112 661112 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.03%3BPV4%3D1%2C5.1e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C29:32 scaffold1862 SAMTools SNP 661232 661232 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C67:70 scaffold1862 SAMTools SNP 661542 661542 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1863 SAMTools SNP 30391 30391 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D19%3BFQ%3D5.09%3BPV4%3D0.43%2C0.34%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C33:33 scaffold1863 SAMTools SNP 60875 60875 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1863 SAMTools SNP 66326 66326 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1863 SAMTools SNP 66935 66935 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C21%2C0:39 scaffold1863 SAMTools SNP 67089 67089 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1863 SAMTools SNP 67475 67475 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1863 SAMTools SNP 67482 67482 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold1863 SAMTools SNP 67696 67696 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.069%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C190:76 scaffold1863 SAMTools SNP 67716 67716 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1863 SAMTools SNP 67720 67720 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold1863 SAMTools SNP 68642 68642 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1863 SAMTools SNP 73184 73184 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold1863 SAMTools SNP 73869 73869 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1863 SAMTools SNP 78127 78127 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C230:99 scaffold1863 SAMTools SNP 78981 78981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.1e-05%2C0.009%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 78983 78983 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 79044 79044 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 79060 79060 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 79651 79651 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 79660 79660 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 80223 80223 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 84922 84922 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1863 SAMTools SNP 85254 85254 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1863 SAMTools SNP 86521 86521 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1863 SAMTools SNP 86709 86709 28.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1863 SAMTools SNP 89138 89138 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold1863 SAMTools SNP 89551 89551 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1863 SAMTools SNP 89706 89706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 89717 89717 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 90866 90866 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 91219 91219 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 91294 91294 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1863 SAMTools SNP 91297 91297 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1863 SAMTools SNP 91845 91845 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1863 SAMTools SNP 92595 92595 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 93602 93602 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1863 SAMTools SNP 94176 94176 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold1863 SAMTools SNP 98860 98860 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C11%2C0%2C6%3BMQ%3D26%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C4%2C0:7 scaffold1863 SAMTools SNP 102271 102271 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C291%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1863 SAMTools SNP 102918 102918 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C412%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1863 SAMTools SNP 103897 103897 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C29%2C0%2C18%3BMQ%3D50%3BFQ%3D88%3BPV4%3D2.3e-05%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1863 SAMTools SNP 105425 105425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C13%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.64%2C1%2C0.22%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 105696 105696 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C9%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.35%2C1%2C0.22%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 108296 108296 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C30%2C0%2C9%3BMQ%3D15%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold1863 SAMTools SNP 108331 108331 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C21%2C2%2C4%3BMQ%3D23%3BFQ%3D-42%3BPV4%3D0.18%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C15%2C0:27 scaffold1863 SAMTools SNP 108356 108356 7.81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C21%2C2%2C0%3BMQ%3D14%3BFQ%3D-52%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C25%2C0:29 scaffold1863 SAMTools SNP 109416 109416 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold1863 SAMTools SNP 109548 109548 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.018%2C2.2e-15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1863 SAMTools SNP 109564 109564 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0065%2C4.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1863 SAMTools SNP 113217 113217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 116679 116679 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C24%3BMQ%3D49%3BFQ%3D-79%3BPV4%3D1%2C0.3%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold1863 SAMTools SNP 116862 116862 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 121051 121051 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C45%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1863 SAMTools SNP 121060 121060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1863 SAMTools SNP 121074 121074 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 121671 121671 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.00033%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1863 SAMTools SNP 122202 122202 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C104%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C7.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C255%2C0:99 scaffold1863 SAMTools SNP 125435 125435 23.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1863 SAMTools SNP 150079 150079 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1863 SAMTools SNP 151267 151267 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1863 SAMTools SNP 162649 162649 53 . . REF=N;ALT=A,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0%2C87%2C5%2C84:16 scaffold1863 SAMTools SNP 163047 163047 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 164617 164617 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 164784 164784 67.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1863 SAMTools SNP 165057 165057 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1863 SAMTools SNP 165238 165238 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1863 SAMTools SNP 208610 208610 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1863 SAMTools SNP 243594 243594 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1863 SAMTools SNP 254060 254060 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1863 SAMTools SNP 261547 261547 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1863 SAMTools SNP 261825 261825 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.7e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1863 SAMTools SNP 261858 261858 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1863 SAMTools SNP 273908 273908 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1863 SAMTools SNP 273941 273941 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1863 SAMTools SNP 274090 274090 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1863 SAMTools SNP 274169 274169 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 275263 275263 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1863 SAMTools SNP 275308 275308 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1863 SAMTools SNP 277649 277649 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C190:99 scaffold1863 SAMTools SNP 279854 279854 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1863 SAMTools SNP 280852 280852 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.22%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C66:69 scaffold1863 SAMTools SNP 281575 281575 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold1863 SAMTools SNP 281716 281716 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1863 SAMTools SNP 281723 281723 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1863 SAMTools SNP 292188 292188 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1863 SAMTools SNP 292686 292686 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1863 SAMTools SNP 292779 292779 21.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1863 SAMTools SNP 292995 292995 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.24%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C25%2C0:47 scaffold1863 SAMTools SNP 293044 293044 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1863 SAMTools SNP 293076 293076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.36%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1863 SAMTools SNP 293562 293562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 295180 295180 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1863 SAMTools SNP 295191 295191 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1863 SAMTools SNP 295200 295200 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1863 SAMTools SNP 295201 295201 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1863 SAMTools SNP 295427 295427 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1863 SAMTools SNP 297361 297361 21.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1863 SAMTools SNP 347019 347019 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 347174 347174 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 349003 349003 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1863 SAMTools SNP 349270 349270 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.33%2C0.0034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold1863 SAMTools SNP 357376 357376 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 357410 357410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 373315 373315 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1863 SAMTools SNP 379163 379163 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1863 SAMTools SNP 379682 379682 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1863 SAMTools SNP 381658 381658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 381827 381827 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C30%2C0:57 scaffold1863 SAMTools SNP 384521 384521 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C23%2C25%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.7%2C7.2e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1863 SAMTools SNP 392797 392797 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold1863 SAMTools SNP 400652 400652 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C27%2C0:51 scaffold1863 SAMTools SNP 402291 402291 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1863 SAMTools SNP 402523 402523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1863 SAMTools SNP 402537 402537 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1863 SAMTools SNP 402695 402695 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1863 SAMTools SNP 405004 405004 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1863 SAMTools SNP 405005 405005 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1863 SAMTools SNP 405011 405011 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.49%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold1863 SAMTools SNP 410719 410719 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 411164 411164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 412084 412084 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1863 SAMTools SNP 412430 412430 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D0.4%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C85:78 scaffold1863 SAMTools SNP 413220 413220 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1863 SAMTools SNP 413556 413556 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1863 SAMTools SNP 413787 413787 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1863 SAMTools SNP 414394 414394 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.4%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C143:99 scaffold1863 SAMTools SNP 414401 414401 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C174:99 scaffold1863 SAMTools SNP 415144 415144 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1863 SAMTools SNP 418998 418998 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 419295 419295 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.33%2C0.00025%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1863 SAMTools SNP 419309 419309 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C66%2C0:99 scaffold1863 SAMTools SNP 420520 420520 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1863 SAMTools SNP 440052 440052 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 440284 440284 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 440329 440329 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold1863 SAMTools SNP 441418 441418 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C24%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.073%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1863 SAMTools SNP 441781 441781 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C1%2C23%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.43%2C0.31%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1863 SAMTools SNP 442219 442219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 442249 442249 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1863 SAMTools SNP 442258 442258 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.15%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold1863 SAMTools SNP 442767 442767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1863 SAMTools SNP 442824 442824 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C36%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1863 SAMTools SNP 443838 443838 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1863 SAMTools SNP 443867 443867 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C176:99 scaffold1863 SAMTools SNP 444099 444099 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1863 SAMTools SNP 444395 444395 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 444411 444411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 444488 444488 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1863 SAMTools SNP 444530 444530 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C238:99 scaffold1863 SAMTools SNP 445504 445504 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.042%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold1863 SAMTools SNP 446808 446808 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold1863 SAMTools SNP 447650 447650 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.3%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1863 SAMTools SNP 447652 447652 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1863 SAMTools SNP 448117 448117 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 448180 448180 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C10%2C32%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.056%2C2.5e-56%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1863 SAMTools SNP 455401 455401 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1863 SAMTools SNP 455411 455411 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1863 SAMTools SNP 455803 455803 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1863 SAMTools SNP 457201 457201 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.00086%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1863 SAMTools SNP 458140 458140 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1863 SAMTools SNP 458152 458152 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1863 SAMTools SNP 458994 458994 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C0%2C12%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.013%2C1%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1863 SAMTools SNP 459036 459036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C32%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1863 SAMTools SNP 459623 459623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1863 SAMTools SNP 459641 459641 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C20%2C32%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 459662 459662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C63%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1863 SAMTools SNP 461092 461092 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1863 SAMTools SNP 461755 461755 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold1863 SAMTools SNP 463999 463999 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C4.6e-14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C234:71 scaffold1864 SAMTools SNP 3438 3438 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D35.8%3BPV4%3D0.47%2C3.9e-10%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C63:66 scaffold1864 SAMTools SNP 17253 17253 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1864 SAMTools SNP 17813 17813 75.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold1864 SAMTools SNP 17887 17887 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1864 SAMTools SNP 18354 18354 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C51%2C0:99 scaffold1864 SAMTools SNP 19581 19581 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1864 SAMTools SNP 19584 19584 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1864 SAMTools SNP 20878 20878 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1864 SAMTools SNP 24691 24691 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1864 SAMTools SNP 24910 24910 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1864 SAMTools SNP 25228 25228 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1864 SAMTools SNP 25243 25243 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1864 SAMTools SNP 25892 25892 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1864 SAMTools SNP 74751 74751 48.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold1864 SAMTools SNP 75145 75145 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1864 SAMTools SNP 83160 83160 43.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold1864 SAMTools SNP 83400 83400 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.23%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C129:99 scaffold1864 SAMTools SNP 83588 83588 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1864 SAMTools SNP 83603 83603 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1864 SAMTools SNP 83615 83615 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.3%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1864 SAMTools SNP 84681 84681 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1864 SAMTools SNP 84751 84751 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1864 SAMTools SNP 84814 84814 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.29%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1864 SAMTools SNP 85056 85056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1864 SAMTools SNP 85062 85062 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1864 SAMTools SNP 86450 86450 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C30%2C0:57 scaffold1864 SAMTools SNP 87684 87684 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1864 SAMTools SNP 87696 87696 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1864 SAMTools SNP 89335 89335 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1864 SAMTools SNP 89368 89368 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C36%2C0:69 scaffold1864 SAMTools SNP 89410 89410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1864 SAMTools SNP 89945 89945 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1864 SAMTools SNP 89992 89992 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1864 SAMTools SNP 91443 91443 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1864 SAMTools SNP 92953 92953 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C24%2C0:45 scaffold1864 SAMTools SNP 92990 92990 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C90:31 scaffold1864 SAMTools SNP 92992 92992 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0187%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold1864 SAMTools SNP 93915 93915 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1864 SAMTools SNP 93936 93936 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1864 SAMTools SNP 94425 94425 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1864 SAMTools SNP 94526 94526 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1864 SAMTools SNP 95370 95370 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1864 SAMTools SNP 95463 95463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1864 SAMTools SNP 96947 96947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1864 SAMTools SNP 97265 97265 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1865 SAMTools SNP 72 72 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 288 288 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 34586 34586 37.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1865 SAMTools SNP 70957 70957 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 88378 88378 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1865 SAMTools SNP 132139 132139 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1865 SAMTools SNP 132144 132144 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1865 SAMTools SNP 133257 133257 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 137119 137119 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1865 SAMTools SNP 139803 139803 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1865 SAMTools SNP 140432 140432 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1865 SAMTools SNP 142046 142046 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1865 SAMTools SNP 143080 143080 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1865 SAMTools SNP 146513 146513 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1865 SAMTools SNP 162545 162545 14.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C10:13 scaffold1865 SAMTools SNP 162546 162546 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C67:43 scaffold1865 SAMTools SNP 162835 162835 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold1865 SAMTools SNP 164299 164299 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.32%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1865 SAMTools SNP 164617 164617 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1865 SAMTools SNP 166889 166889 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1865 SAMTools SNP 168195 168195 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D45%3BPV4%3D0.18%2C0.31%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C248:75 scaffold1865 SAMTools SNP 168213 168213 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D43%3BFQ%3D27%3BPV4%3D0.46%2C0.41%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C54:57 scaffold1865 SAMTools SNP 168304 168304 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D8.83%3BPV4%3D0.25%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C43:37 scaffold1865 SAMTools SNP 168843 168843 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1865 SAMTools SNP 175405 175405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1865 SAMTools SNP 175763 175763 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold1865 SAMTools SNP 176569 176569 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1865 SAMTools SNP 176629 176629 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1865 SAMTools SNP 177114 177114 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1865 SAMTools SNP 177129 177129 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 177144 177144 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 195219 195219 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1865 SAMTools SNP 195294 195294 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1865 SAMTools SNP 195652 195652 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1865 SAMTools SNP 195793 195793 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1865 SAMTools SNP 195991 195991 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 196154 196154 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 198548 198548 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D42%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1865 SAMTools SNP 198616 198616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1865 SAMTools SNP 198675 198675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D44%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1865 SAMTools SNP 198979 198979 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1865 SAMTools SNP 202110 202110 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1865 SAMTools SNP 205247 205247 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1865 SAMTools SNP 214650 214650 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1865 SAMTools SNP 224242 224242 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1865 SAMTools SNP 224269 224269 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C36%2C0:69 scaffold1865 SAMTools SNP 224290 224290 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1865 SAMTools SNP 225255 225255 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1865 SAMTools SNP 225267 225267 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1865 SAMTools SNP 225446 225446 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C36%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1865 SAMTools SNP 225647 225647 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1865 SAMTools SNP 225720 225720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C8%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 225916 225916 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.0013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1865 SAMTools SNP 225919 225919 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.31%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1865 SAMTools SNP 225973 225973 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C57%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 226271 226271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.00011%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 226494 226494 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1865 SAMTools SNP 226506 226506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1865 SAMTools SNP 226534 226534 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.092%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C98:77 scaffold1865 SAMTools SNP 226552 226552 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.12%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1865 SAMTools SNP 226794 226794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1865 SAMTools SNP 227304 227304 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1865 SAMTools SNP 227772 227772 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1865 SAMTools SNP 227791 227791 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.059%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold1865 SAMTools SNP 227827 227827 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1865 SAMTools SNP 229962 229962 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1865 SAMTools SNP 229990 229990 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1865 SAMTools SNP 229999 229999 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1865 SAMTools SNP 234156 234156 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1865 SAMTools SNP 234804 234804 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1865 SAMTools SNP 234941 234941 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1865 SAMTools SNP 241127 241127 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1.4e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold1865 SAMTools SNP 241150 241150 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0047%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold1865 SAMTools SNP 242307 242307 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1865 SAMTools SNP 246131 246131 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1865 SAMTools SNP 250382 250382 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1865 SAMTools SNP 250421 250421 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.4%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1865 SAMTools SNP 250966 250966 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1865 SAMTools SNP 251199 251199 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C166:73 scaffold1865 SAMTools SNP 251229 251229 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold1865 SAMTools SNP 252658 252658 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.36%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1865 SAMTools SNP 253710 253710 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.54%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1865 SAMTools SNP 254044 254044 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1865 SAMTools SNP 254870 254870 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1865 SAMTools SNP 255324 255324 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1865 SAMTools SNP 255454 255454 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C69%2C0:99 scaffold1865 SAMTools SNP 255498 255498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1865 SAMTools SNP 255537 255537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 255579 255579 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 256401 256401 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1865 SAMTools SNP 256497 256497 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold1865 SAMTools SNP 257137 257137 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold1865 SAMTools SNP 257164 257164 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold1865 SAMTools SNP 257185 257185 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1865 SAMTools SNP 257868 257868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1865 SAMTools SNP 258016 258016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1865 SAMTools SNP 268414 268414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C57%2C7%2C58%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.042%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 268512 268512 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C11%2C84%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 269596 269596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C55%2C60%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 269687 269687 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1865 SAMTools SNP 269701 269701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C46%2C4%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold1865 SAMTools SNP 270492 270492 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1865 SAMTools SNP 271796 271796 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C74%2C75%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 272580 272580 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C61%2C18%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 272609 272609 79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C98%2C0%2C33%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.0079%2C0.35%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1865 SAMTools SNP 272892 272892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C16%2C18%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C0.00092%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 273439 273439 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1865 SAMTools SNP 276657 276657 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C48%2C65%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 276710 276710 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C98%2C14%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 276969 276969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C70%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-07%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 282726 282726 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C8%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.73%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1865 SAMTools SNP 282769 282769 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.014%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1865 SAMTools SNP 282817 282817 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C24%2C62%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 283292 283292 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C24%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.035%2C0.43%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1865 SAMTools SNP 284838 284838 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1865 SAMTools SNP 285604 285604 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1865 SAMTools SNP 285612 285612 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1865 SAMTools SNP 286501 286501 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C1%2C1%2C4.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 286524 286524 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C24%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 287585 287585 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1865 SAMTools SNP 287663 287663 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold1865 SAMTools SNP 288256 288256 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C32%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 288823 288823 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C42%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1865 SAMTools SNP 289128 289128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1865 SAMTools SNP 289456 289456 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 289664 289664 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.3%2C6e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1865 SAMTools SNP 289745 289745 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1865 SAMTools SNP 290142 290142 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D217%3BPV4%3D4.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold1865 SAMTools SNP 291787 291787 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C7%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 291838 291838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C55%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1865 SAMTools SNP 294083 294083 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 294101 294101 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C8%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.62%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1865 SAMTools SNP 294161 294161 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold1865 SAMTools SNP 294358 294358 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1865 SAMTools SNP 294370 294370 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold1865 SAMTools SNP 299458 299458 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1865 SAMTools SNP 299482 299482 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1865 SAMTools SNP 302584 302584 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.58%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1865 SAMTools SNP 302617 302617 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.26%2C4e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1865 SAMTools SNP 302631 302631 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C7.8e-05%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1865 SAMTools SNP 302986 302986 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1865 SAMTools SNP 303047 303047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C29%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1865 SAMTools SNP 303673 303673 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.069%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C219:99 scaffold1865 SAMTools SNP 303690 303690 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1865 SAMTools SNP 303726 303726 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1865 SAMTools SNP 303740 303740 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.067%2C0.12%2C1%2C5.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1865 SAMTools SNP 303989 303989 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C13%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C246:99 scaffold1865 SAMTools SNP 304676 304676 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.23%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1865 SAMTools SNP 305367 305367 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1865 SAMTools SNP 305535 305535 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1.4e-19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1865 SAMTools SNP 305616 305616 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C202:99 scaffold1865 SAMTools SNP 306299 306299 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1865 SAMTools SNP 306347 306347 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.0019%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1865 SAMTools SNP 306356 306356 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C69%2C0:99 scaffold1865 SAMTools SNP 306892 306892 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0035%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1865 SAMTools SNP 307934 307934 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold1865 SAMTools SNP 309059 309059 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1865 SAMTools SNP 309323 309323 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1865 SAMTools SNP 310922 310922 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.31%2C3.5e-05%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C252:99 scaffold1865 SAMTools SNP 311170 311170 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1865 SAMTools SNP 311179 311179 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1865 SAMTools SNP 311536 311536 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1865 SAMTools SNP 311893 311893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1865 SAMTools SNP 311946 311946 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold1865 SAMTools SNP 312364 312364 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold1865 SAMTools SNP 312785 312785 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.57%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C217:99 scaffold1865 SAMTools SNP 312811 312811 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1865 SAMTools SNP 313326 313326 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1865 SAMTools SNP 313335 313335 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold1865 SAMTools SNP 313338 313338 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1865 SAMTools SNP 315003 315003 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.43%2C0.027%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C217:51 scaffold1865 SAMTools SNP 315378 315378 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1865 SAMTools SNP 316356 316356 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1865 SAMTools SNP 316623 316623 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1865 SAMTools SNP 316832 316832 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1865 SAMTools SNP 340478 340478 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1865 SAMTools SNP 344144 344144 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1865 SAMTools SNP 348072 348072 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1866 SAMTools SNP 127 127 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1866 SAMTools SNP 158 158 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold1866 SAMTools SNP 844 844 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C155:99 scaffold1866 SAMTools SNP 862 862 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C157:99 scaffold1866 SAMTools SNP 5482 5482 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1866 SAMTools SNP 20799 20799 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1866 SAMTools SNP 20814 20814 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.3%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1866 SAMTools SNP 34317 34317 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 35359 35359 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1866 SAMTools SNP 35443 35443 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1866 SAMTools SNP 35447 35447 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold1866 SAMTools SNP 35924 35924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1866 SAMTools SNP 36337 36337 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.19%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C202:99 scaffold1866 SAMTools SNP 37312 37312 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.064%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1866 SAMTools SNP 37364 37364 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1866 SAMTools SNP 37388 37388 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1866 SAMTools SNP 37702 37702 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1866 SAMTools SNP 38340 38340 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold1866 SAMTools SNP 38345 38345 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C71:74 scaffold1866 SAMTools SNP 38938 38938 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1866 SAMTools SNP 39455 39455 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 39875 39875 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1866 SAMTools SNP 41043 41043 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 41053 41053 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.24%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1866 SAMTools SNP 41131 41131 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 41417 41417 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C12%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.5%2C3.2e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C195:99 scaffold1866 SAMTools SNP 41431 41431 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1866 SAMTools SNP 41504 41504 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 41509 41509 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 42039 42039 138 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C32%2C164%2C0%2C161:27 scaffold1866 SAMTools SNP 42042 42042 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1866 SAMTools SNP 43731 43731 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1866 SAMTools SNP 43749 43749 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 47869 47869 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1866 SAMTools SNP 47870 47870 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1866 SAMTools SNP 48385 48385 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C234:99 scaffold1866 SAMTools SNP 49053 49053 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1866 SAMTools SNP 49392 49392 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1866 SAMTools SNP 49431 49431 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1866 SAMTools SNP 49481 49481 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold1866 SAMTools SNP 52742 52742 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 52775 52775 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 55029 55029 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1866 SAMTools SNP 55904 55904 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1866 SAMTools SNP 56165 56165 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1866 SAMTools SNP 65037 65037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 65079 65079 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1866 SAMTools SNP 65640 65640 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.52%2C0.03%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1866 SAMTools SNP 81585 81585 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold1866 SAMTools SNP 86533 86533 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1866 SAMTools SNP 87525 87525 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C157:74 scaffold1866 SAMTools SNP 87526 87526 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1866 SAMTools SNP 87575 87575 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1866 SAMTools SNP 87581 87581 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1866 SAMTools SNP 87949 87949 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1866 SAMTools SNP 98669 98669 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold1866 SAMTools SNP 100270 100270 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 100920 100920 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1866 SAMTools SNP 100962 100962 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1866 SAMTools SNP 100986 100986 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0:51 scaffold1866 SAMTools SNP 101395 101395 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1866 SAMTools SNP 101406 101406 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold1866 SAMTools SNP 102441 102441 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1866 SAMTools SNP 103963 103963 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1866 SAMTools SNP 104018 104018 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold1866 SAMTools SNP 187015 187015 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C70%3BMQ%3D3%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C250%2C0:99 scaffold1866 SAMTools SNP 187042 187042 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C70%3BMQ%3D3%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C247%2C0:99 scaffold1866 SAMTools SNP 187120 187120 6.97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D3%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C66%2C0:51 scaffold1866 SAMTools SNP 187150 187150 9.51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D3%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C72%2C0:60 scaffold1866 SAMTools SNP 215955 215955 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 215958 215958 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 215977 215977 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1866 SAMTools SNP 228755 228755 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C30%2C0:57 scaffold1866 SAMTools SNP 228795 228795 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C23%3BMQ%3D48%3BFQ%3D-49%3BPV4%3D1%2C1.3e-15%2C0.39%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C22%2C0:36 scaffold1866 SAMTools SNP 238980 238980 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold1866 SAMTools SNP 240173 240173 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1866 SAMTools SNP 243982 243982 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1866 SAMTools SNP 282465 282465 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1866 SAMTools SNP 292895 292895 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1866 SAMTools SNP 292957 292957 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1866 SAMTools SNP 293164 293164 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 293185 293185 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 295351 295351 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1866 SAMTools SNP 297457 297457 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D38%3BFQ%3D24%3BPV4%3D0.46%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C194:54 scaffold1866 SAMTools SNP 297481 297481 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D39%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C183:51 scaffold1866 SAMTools SNP 303753 303753 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C1%3BMQ%3D41%3BFQ%3D88.9%3BPV4%3D0.58%2C0.089%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C133:99 scaffold1866 SAMTools SNP 304272 304272 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C4%2C4%3BMQ%3D49%3BFQ%3D173%3BPV4%3D0.06%2C0.21%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1866 SAMTools SNP 304317 304317 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.55%2C0.02%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1866 SAMTools SNP 304787 304787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C23%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold1866 SAMTools SNP 304817 304817 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C23%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold1866 SAMTools SNP 307080 307080 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 313907 313907 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold1866 SAMTools SNP 330782 330782 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1866 SAMTools SNP 331452 331452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1866 SAMTools SNP 331803 331803 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C8%2C19%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.53%2C1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1866 SAMTools SNP 331986 331986 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.5e-21%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1866 SAMTools SNP 332595 332595 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 335320 335320 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1866 SAMTools SNP 356567 356567 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1.6e-06%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 356993 356993 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.003%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1866 SAMTools SNP 361251 361251 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1866 SAMTools SNP 363255 363255 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C19%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C6.4e-30%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C217:56 scaffold1866 SAMTools SNP 363550 363550 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1866 SAMTools SNP 363757 363757 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C4%2C108%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.69%2C4e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1866 SAMTools SNP 364400 364400 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C62%2C9%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0044%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1866 SAMTools SNP 364442 364442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C70%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.4e-08%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 364463 364463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C63%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 365401 365401 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C19%2C17%2C3%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1866 SAMTools SNP 365416 365416 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C26%2C17%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0097%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1866 SAMTools SNP 366039 366039 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1866 SAMTools SNP 366042 366042 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 366186 366186 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.29%2C0.0017%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1866 SAMTools SNP 366207 366207 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.63%2C0.069%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1866 SAMTools SNP 366225 366225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 366987 366987 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.5%2C9.7e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1866 SAMTools SNP 367107 367107 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.018%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C217:39 scaffold1866 SAMTools SNP 367114 367114 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.029%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C239:34 scaffold1866 SAMTools SNP 369343 369343 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.33%2C0.024%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1866 SAMTools SNP 370539 370539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 370821 370821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 370869 370869 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C0%2C12%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.19%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold1866 SAMTools SNP 371065 371065 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C240:99 scaffold1866 SAMTools SNP 371461 371461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1866 SAMTools SNP 371944 371944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.39%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 372228 372228 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C14%2C37%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.12%2C3e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1866 SAMTools SNP 372787 372787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C37%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1866 SAMTools SNP 372905 372905 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1866 SAMTools SNP 373640 373640 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1866 SAMTools SNP 373667 373667 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1866 SAMTools SNP 373673 373673 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1866 SAMTools SNP 373697 373697 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.21%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1866 SAMTools SNP 375414 375414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1866 SAMTools SNP 375816 375816 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C22%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.3%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C230:99 scaffold1866 SAMTools SNP 376417 376417 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 376420 376420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C41%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 376438 376438 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C3%2C41%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 376522 376522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C47%2C7%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 376939 376939 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C3.9e-09%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 377487 377487 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C24%2C22%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0065%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1866 SAMTools SNP 378974 378974 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 379278 379278 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C16%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.42%2C2.5e-19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold1866 SAMTools SNP 379617 379617 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C0.035%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1866 SAMTools SNP 380115 380115 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C184:60 scaffold1866 SAMTools SNP 380118 380118 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C57:60 scaffold1866 SAMTools SNP 380362 380362 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C18%2C0:33 scaffold1866 SAMTools SNP 380509 380509 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1866 SAMTools SNP 380990 380990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1866 SAMTools SNP 381014 381014 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C7%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold1866 SAMTools SNP 381337 381337 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1866 SAMTools SNP 381818 381818 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C5%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.23%2C0.0034%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1866 SAMTools SNP 382160 382160 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.18%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold1866 SAMTools SNP 384075 384075 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C205:33 scaffold1866 SAMTools SNP 384102 384102 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C4%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.071%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1866 SAMTools SNP 384115 384115 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0011%2C8.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1866 SAMTools SNP 385571 385571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.48%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 385777 385777 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 385831 385831 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C5.4e-18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1866 SAMTools SNP 386222 386222 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 386225 386225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 386425 386425 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C15%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.51%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1866 SAMTools SNP 386654 386654 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold1866 SAMTools SNP 386830 386830 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1866 SAMTools SNP 386863 386863 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1866 SAMTools SNP 386880 386880 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 386926 386926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1866 SAMTools SNP 386947 386947 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.27%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1866 SAMTools SNP 387190 387190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1866 SAMTools SNP 387289 387289 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.28%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C224:99 scaffold1866 SAMTools SNP 387498 387498 88 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C9%2C117%2C0%2C114:16 scaffold1866 SAMTools SNP 388147 388147 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1866 SAMTools SNP 388255 388255 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C254:99 scaffold1866 SAMTools SNP 388907 388907 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 388947 388947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1866 SAMTools SNP 389440 389440 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C10%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1866 SAMTools SNP 390481 390481 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1866 SAMTools SNP 392688 392688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1866 SAMTools SNP 393028 393028 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1866 SAMTools SNP 396614 396614 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold1866 SAMTools SNP 409612 409612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1866 SAMTools SNP 419658 419658 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C24%2C0:45 scaffold1866 SAMTools SNP 420474 420474 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C3.5e-30%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 420709 420709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 421071 421071 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.00031%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C238:88 scaffold1866 SAMTools SNP 421560 421560 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C4%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.42%2C2.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1866 SAMTools SNP 421584 421584 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1866 SAMTools SNP 423034 423034 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.7e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold1866 SAMTools SNP 430455 430455 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D363%2C58%2C155%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D6.8e-09%2C2.2e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1866 SAMTools SNP 433482 433482 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1866 SAMTools SNP 434706 434706 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1111%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C960%2C87%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1866 SAMTools SNP 434775 434775 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1315%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C536%2C550%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.49%2C0.023%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1866 SAMTools SNP 435142 435142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C417%2C27%2C278%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C0.24%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 438954 438954 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 439168 439168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 441474 441474 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C15%2C65%2C11%3BMQ%3D46%3BFQ%3D146%3BPV4%3D0.26%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1866 SAMTools SNP 441504 441504 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C27%2C91%2C18%3BMQ%3D46%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1866 SAMTools SNP 442721 442721 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C142%2C1%2C143%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1866 SAMTools SNP 452384 452384 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 452510 452510 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 466515 466515 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1866 SAMTools SNP 482412 482412 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C8%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.3%2C4.6e-34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1866 SAMTools SNP 486221 486221 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1866 SAMTools SNP 501113 501113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 502456 502456 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1866 SAMTools SNP 502482 502482 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1866 SAMTools SNP 502518 502518 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1866 SAMTools SNP 502542 502542 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1866 SAMTools SNP 502548 502548 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1866 SAMTools SNP 504186 504186 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1866 SAMTools SNP 504412 504412 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1867 SAMTools SNP 510 510 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1867 SAMTools SNP 6762 6762 33.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1867 SAMTools SNP 7110 7110 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1867 SAMTools SNP 7864 7864 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1867 SAMTools SNP 7906 7906 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.075%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1867 SAMTools SNP 7912 7912 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1867 SAMTools SNP 10430 10430 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1867 SAMTools SNP 10532 10532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1867 SAMTools SNP 11913 11913 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1867 SAMTools SNP 12611 12611 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold1867 SAMTools SNP 13254 13254 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.25%2C0.0085%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1867 SAMTools SNP 15360 15360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1867 SAMTools SNP 15396 15396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1867 SAMTools SNP 22751 22751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C26%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1867 SAMTools SNP 26800 26800 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1867 SAMTools SNP 29348 29348 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.065%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C218:99 scaffold1867 SAMTools SNP 29359 29359 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C0.35%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C245:99 scaffold1867 SAMTools SNP 29448 29448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1867 SAMTools SNP 29490 29490 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C39%2C19%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1867 SAMTools SNP 29494 29494 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C19%2C0%2C19%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1.4e-12%2C1%2C1%2C6.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1867 SAMTools SNP 29649 29649 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C39%2C13%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-09%2C1%2C1%2C6.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1867 SAMTools SNP 30140 30140 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C2%2C14%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.16%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1867 SAMTools SNP 32445 32445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C61%3BMQ%3D48%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1867 SAMTools SNP 32869 32869 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C12%3BMQ%3D47%3BFQ%3D174%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1867 SAMTools SNP 32902 32902 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D48%3BFQ%3D-26%3BPV4%3D1%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C1:4 scaffold1867 SAMTools SNP 32987 32987 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1867 SAMTools SNP 33014 33014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C31%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1867 SAMTools SNP 47932 47932 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1867 SAMTools SNP 48824 48824 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.043%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold1867 SAMTools SNP 49351 49351 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C112:99 scaffold1867 SAMTools SNP 49401 49401 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold1867 SAMTools SNP 49443 49443 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1867 SAMTools SNP 50053 50053 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C217:99 scaffold1867 SAMTools SNP 50062 50062 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1867 SAMTools SNP 50633 50633 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.63%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1867 SAMTools SNP 51071 51071 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold1867 SAMTools SNP 51159 51159 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.56%2C0.031%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1867 SAMTools SNP 51925 51925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1867 SAMTools SNP 51992 51992 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C13%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.42%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold1867 SAMTools SNP 54504 54504 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1867 SAMTools SNP 56129 56129 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1867 SAMTools SNP 56147 56147 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1867 SAMTools SNP 58000 58000 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.022%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1867 SAMTools SNP 58170 58170 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1867 SAMTools SNP 66773 66773 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C38:41 scaffold1867 SAMTools SNP 67302 67302 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C27%2C0:51 scaffold1867 SAMTools SNP 67323 67323 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold1867 SAMTools SNP 67629 67629 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1867 SAMTools SNP 71487 71487 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1867 SAMTools SNP 73243 73243 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1867 SAMTools SNP 77176 77176 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C243:37 scaffold1867 SAMTools SNP 77273 77273 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C16%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0032%2C1.2e-35%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1867 SAMTools SNP 78169 78169 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C107:99 scaffold1867 SAMTools SNP 104871 104871 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1867 SAMTools SNP 105178 105178 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D48%3BFQ%3D32%3BPV4%3D1%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C147:62 scaffold1867 SAMTools SNP 106473 106473 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1867 SAMTools SNP 106593 106593 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1867 SAMTools SNP 107273 107273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1867 SAMTools SNP 107289 107289 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1868 SAMTools SNP 12637 12637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C28%2C16%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D0.38%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold1868 SAMTools SNP 12643 12643 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C13%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.00028%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1868 SAMTools SNP 12898 12898 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold1868 SAMTools SNP 13000 13000 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C66%2C0:99 scaffold1868 SAMTools SNP 13405 13405 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C39%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C199%2C0:99 scaffold1868 SAMTools SNP 13510 13510 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C28%2C15%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1868 SAMTools SNP 13540 13540 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C21%3BMQ%3D50%3BFQ%3D48.5%3BPV4%3D1%2C5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C76:78 scaffold1868 SAMTools SNP 13711 13711 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold1868 SAMTools SNP 13816 13816 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold1868 SAMTools SNP 14303 14303 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C202:41 scaffold1868 SAMTools SNP 14623 14623 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold1868 SAMTools SNP 16349 16349 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.057%2C6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C141:52 scaffold1868 SAMTools SNP 16529 16529 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.072%2C6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C221:51 scaffold1868 SAMTools SNP 16789 16789 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C53%2C25%2C56%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.19%2C2.7e-65%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1868 SAMTools SNP 70141 70141 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1868 SAMTools SNP 72940 72940 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1868 SAMTools SNP 77983 77983 37.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1868 SAMTools SNP 78941 78941 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1868 SAMTools SNP 112084 112084 30.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold1868 SAMTools SNP 112354 112354 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C35:38 scaffold1868 SAMTools SNP 144928 144928 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C30:33 scaffold1868 SAMTools SNP 151413 151413 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C18%2C0:33 scaffold1868 SAMTools SNP 151736 151736 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C148:31 scaffold1868 SAMTools SNP 166837 166837 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1868 SAMTools SNP 170367 170367 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.028%2C1%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1868 SAMTools SNP 170424 170424 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1868 SAMTools SNP 170439 170439 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1868 SAMTools SNP 170451 170451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1868 SAMTools SNP 171365 171365 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1868 SAMTools SNP 172169 172169 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1868 SAMTools SNP 175471 175471 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1868 SAMTools SNP 175536 175536 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C38%2C38%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C4.7e-16%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1868 SAMTools SNP 175589 175589 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1868 SAMTools SNP 175803 175803 26.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1868 SAMTools SNP 176637 176637 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C24%2C0:45 scaffold1868 SAMTools SNP 176640 176640 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1868 SAMTools SNP 177006 177006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1868 SAMTools SNP 177723 177723 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C90%2C13%2C62%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.68%2C5.3e-155%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1868 SAMTools SNP 178407 178407 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C152%2C13%2C125%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.4%2C3.3e-214%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1868 SAMTools SNP 179236 179236 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C45%2C8%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.053%2C0.024%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1868 SAMTools SNP 179503 179503 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C31%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0084%2C0.5%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1868 SAMTools SNP 187498 187498 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1868 SAMTools SNP 187638 187638 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D344%2C1%2C113%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C2.1e-33;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1868 SAMTools SNP 190701 190701 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7942%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5118%2C28%2C2796%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D8.4e-06%2C1%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1868 SAMTools SNP 190746 190746 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5073%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C3888%2C752%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1868 SAMTools SNP 190935 190935 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 546 546 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1869 SAMTools SNP 992 992 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.37%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1869 SAMTools SNP 1001 1001 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.48%2C0.27%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1869 SAMTools SNP 1004 1004 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C0.098%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1869 SAMTools SNP 1067 1067 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C4%2C7%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.037%2C4.5e-13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1869 SAMTools SNP 1334 1334 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1869 SAMTools SNP 7253 7253 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 7271 7271 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold1869 SAMTools SNP 7538 7538 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1869 SAMTools SNP 8656 8656 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1869 SAMTools SNP 11160 11160 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.23%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C204:99 scaffold1869 SAMTools SNP 11377 11377 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1869 SAMTools SNP 13040 13040 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.024%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C146:99 scaffold1869 SAMTools SNP 13062 13062 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold1869 SAMTools SNP 13071 13071 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1869 SAMTools SNP 13077 13077 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C1%2C1%2C6.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1869 SAMTools SNP 13432 13432 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.041%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C227:99 scaffold1869 SAMTools SNP 16789 16789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C9%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 16813 16813 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C2%2C5%3BMQ%3D46%3BFQ%3D51%3BPV4%3D0.091%2C0.15%2C0.15%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold1869 SAMTools SNP 16912 16912 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D46%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1869 SAMTools SNP 17873 17873 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C6%2C93%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.31%2C2.3e-108%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1869 SAMTools SNP 18511 18511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1869 SAMTools SNP 19667 19667 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C3.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1869 SAMTools SNP 19915 19915 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C3%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.39%2C3.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1869 SAMTools SNP 20399 20399 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 20654 20654 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C148%2C0:99 scaffold1869 SAMTools SNP 20660 20660 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C4.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 21122 21122 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.39%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1869 SAMTools SNP 21896 21896 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.041%2C1.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1869 SAMTools SNP 22387 22387 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.39%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C152:52 scaffold1869 SAMTools SNP 22610 22610 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1869 SAMTools SNP 22675 22675 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1869 SAMTools SNP 23469 23469 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold1869 SAMTools SNP 23472 23472 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold1869 SAMTools SNP 23661 23661 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1869 SAMTools SNP 25383 25383 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 25637 25637 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C170:99 scaffold1869 SAMTools SNP 28450 28450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 29195 29195 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C10%2C6%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C5.7e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1869 SAMTools SNP 29407 29407 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.22%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1869 SAMTools SNP 30459 30459 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C2%2C10%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.16%2C6.5e-13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1869 SAMTools SNP 30484 30484 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1869 SAMTools SNP 31579 31579 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C27%2C0:51 scaffold1869 SAMTools SNP 32495 32495 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold1869 SAMTools SNP 32562 32562 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold1869 SAMTools SNP 32594 32594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1869 SAMTools SNP 33266 33266 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1869 SAMTools SNP 33455 33455 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1869 SAMTools SNP 33472 33472 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1869 SAMTools SNP 36910 36910 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D57%2C12%2C18%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C6.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1869 SAMTools SNP 37887 37887 112 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C73%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C214%2C0%2C139%2C174%2C133:99 scaffold1869 SAMTools SNP 39387 39387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C201%2C7%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-06%2C8.8e-28%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 39504 39504 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C200%2C7%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 39849 39849 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C77%2C20%2C11%3BMQ%3D49%3BFQ%3D132%3BPV4%3D0.43%2C0.079%2C1%2C3.6e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1869 SAMTools SNP 40251 40251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C113%2C0%2C85%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.3%2C0.43%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 40797 40797 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1869 SAMTools SNP 41875 41875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-10%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 42577 42577 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C32%2C66%2C20%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.74%2C1.4e-99%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1869 SAMTools SNP 44310 44310 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C45%2C39%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.019%2C0.039%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold1869 SAMTools SNP 44772 44772 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1869 SAMTools SNP 44793 44793 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1869 SAMTools SNP 66107 66107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.21%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 66718 66718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1869 SAMTools SNP 66742 66742 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1869 SAMTools SNP 67077 67077 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C253:99 scaffold1869 SAMTools SNP 67421 67421 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 67472 67472 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1869 SAMTools SNP 68951 68951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 68954 68954 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.27%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1869 SAMTools SNP 68996 68996 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C0.0024%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1869 SAMTools SNP 69239 69239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C19%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.31%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 70264 70264 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1869 SAMTools SNP 70309 70309 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C0.011%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 72283 72283 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.63%2C2.9e-13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C236:99 scaffold1869 SAMTools SNP 72947 72947 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C246:42 scaffold1869 SAMTools SNP 77640 77640 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1869 SAMTools SNP 77997 77997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 78015 78015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 78488 78488 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C12%2C54%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 79692 79692 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C1%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 79713 79713 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C0%2C22%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1869 SAMTools SNP 79831 79831 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C0%2C18%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.18%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1869 SAMTools SNP 79891 79891 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1869 SAMTools SNP 79897 79897 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1869 SAMTools SNP 79925 79925 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1869 SAMTools SNP 79945 79945 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1869 SAMTools SNP 80835 80835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1869 SAMTools SNP 81928 81928 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1869 SAMTools SNP 81950 81950 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1869 SAMTools SNP 82596 82596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1869 SAMTools SNP 82671 82671 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1869 SAMTools SNP 82732 82732 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C21%2C0:39 scaffold1869 SAMTools SNP 83027 83027 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1869 SAMTools SNP 83084 83084 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1869 SAMTools SNP 83263 83263 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1869 SAMTools SNP 83291 83291 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1869 SAMTools SNP 84934 84934 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1869 SAMTools SNP 85132 85132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C115%2C109%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1869 SAMTools SNP 86147 86147 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C26%2C21%2C25%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0013%2C6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1869 SAMTools SNP 86225 86225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C73%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 86911 86911 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C78%2C8%2C21%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.065%2C0.2%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1869 SAMTools SNP 87222 87222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C68%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 87267 87267 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-11%2C1%2C1%2C9.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1869 SAMTools SNP 87276 87276 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C17%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1.2e-08%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold1869 SAMTools SNP 87649 87649 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1869 SAMTools SNP 87658 87658 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1869 SAMTools SNP 94285 94285 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1869 SAMTools SNP 94309 94309 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 94725 94725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1869 SAMTools SNP 94965 94965 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C21%2C0:39 scaffold1869 SAMTools SNP 107978 107978 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1869 SAMTools SNP 109004 109004 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C5e-32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1869 SAMTools SNP 115484 115484 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold1869 SAMTools SNP 128149 128149 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C113:39 scaffold1869 SAMTools SNP 129215 129215 91.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold1869 SAMTools SNP 129310 129310 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C116:28 scaffold1869 SAMTools SNP 161097 161097 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1869 SAMTools SNP 161127 161127 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1869 SAMTools SNP 161159 161159 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1869 SAMTools SNP 161625 161625 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 161634 161634 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1869 SAMTools SNP 196515 196515 10.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1869 SAMTools SNP 202893 202893 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1869 SAMTools SNP 208522 208522 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 7227 7227 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1870 SAMTools SNP 83867 83867 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1870 SAMTools SNP 85866 85866 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold1870 SAMTools SNP 90154 90154 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.3%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1870 SAMTools SNP 90191 90191 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.61%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1870 SAMTools SNP 92553 92553 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold1870 SAMTools SNP 94130 94130 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1870 SAMTools SNP 97391 97391 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 97392 97392 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 103876 103876 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1870 SAMTools SNP 103887 103887 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1870 SAMTools SNP 104226 104226 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1870 SAMTools SNP 105981 105981 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 119180 119180 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C39%2C0:75 scaffold1870 SAMTools SNP 119540 119540 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C31%2C38%2C33%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.25%2C1.8e-155%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1870 SAMTools SNP 119603 119603 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C85%3BMQ%3D50%3BFQ%3D-258%3BPV4%3D1%2C1.3e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C231%2C0:99 scaffold1870 SAMTools SNP 123632 123632 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1870 SAMTools SNP 123849 123849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1870 SAMTools SNP 123912 123912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C10%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D0.48%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold1870 SAMTools SNP 123951 123951 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D13%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C46:42 scaffold1870 SAMTools SNP 125189 125189 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.63%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1870 SAMTools SNP 125228 125228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold1870 SAMTools SNP 127103 127103 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold1870 SAMTools SNP 127269 127269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1870 SAMTools SNP 127524 127524 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1870 SAMTools SNP 127575 127575 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.53%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1870 SAMTools SNP 128262 128262 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C2%3BMQ%3D36%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C192:44 scaffold1870 SAMTools SNP 133808 133808 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D134%3BPV4%3D7e-05%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold1870 SAMTools SNP 134687 134687 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C3%2C42%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.088%2C4.4e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1870 SAMTools SNP 134705 134705 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C4%2C13%3BMQ%3D50%3BFQ%3D183%3BPV4%3D9.3e-05%2C0.00067%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1870 SAMTools SNP 136027 136027 174 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C24%2C0%2C204%2C12%2C201:45 scaffold1870 SAMTools SNP 136311 136311 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1870 SAMTools SNP 136574 136574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1870 SAMTools SNP 137067 137067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C81%2C6%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 137249 137249 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C4.1e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1870 SAMTools SNP 137846 137846 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1870 SAMTools SNP 137880 137880 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.017%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C178:42 scaffold1870 SAMTools SNP 137919 137919 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1870 SAMTools SNP 138517 138517 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 138534 138534 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1870 SAMTools SNP 139163 139163 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.093%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1870 SAMTools SNP 139401 139401 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold1870 SAMTools SNP 142818 142818 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold1870 SAMTools SNP 142836 142836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1870 SAMTools SNP 142883 142883 83.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold1870 SAMTools SNP 144311 144311 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1870 SAMTools SNP 145217 145217 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 146011 146011 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C3%2C0:6 scaffold1870 SAMTools SNP 146604 146604 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1870 SAMTools SNP 147110 147110 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1870 SAMTools SNP 147213 147213 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C112:70 scaffold1870 SAMTools SNP 147902 147902 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C207:69 scaffold1870 SAMTools SNP 148404 148404 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1870 SAMTools SNP 149876 149876 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1870 SAMTools SNP 149953 149953 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.1%2C0.002%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold1870 SAMTools SNP 150005 150005 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold1870 SAMTools SNP 150047 150047 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1870 SAMTools SNP 150753 150753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 150768 150768 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 151276 151276 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1870 SAMTools SNP 151696 151696 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 152015 152015 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold1870 SAMTools SNP 152132 152132 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1870 SAMTools SNP 152722 152722 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1870 SAMTools SNP 153955 153955 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C21%2C0:39 scaffold1870 SAMTools SNP 153979 153979 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold1870 SAMTools SNP 154362 154362 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1870 SAMTools SNP 154644 154644 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1870 SAMTools SNP 164533 164533 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold1870 SAMTools SNP 164550 164550 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 167594 167594 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1870 SAMTools SNP 176432 176432 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1870 SAMTools SNP 176444 176444 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.39%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold1870 SAMTools SNP 176662 176662 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 176743 176743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C10%2C79%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 177051 177051 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 177065 177065 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 185289 185289 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1870 SAMTools SNP 185328 185328 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1870 SAMTools SNP 185974 185974 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1870 SAMTools SNP 195428 195428 58.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1870 SAMTools SNP 205597 205597 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.57%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C217:99 scaffold1870 SAMTools SNP 209362 209362 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1870 SAMTools SNP 216942 216942 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.35%2C1.7e-30%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1870 SAMTools SNP 223344 223344 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C21%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.034%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 226089 226089 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C8%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 226125 226125 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C2%3BMQ%3D48%3BFQ%3D68%3BPV4%3D0.024%2C0.33%2C0.0023%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1870 SAMTools SNP 226271 226271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1870 SAMTools SNP 226712 226712 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 227599 227599 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C49%2C0%2C38%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.00022%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1870 SAMTools SNP 227621 227621 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.023%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1870 SAMTools SNP 227749 227749 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1870 SAMTools SNP 229157 229157 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1870 SAMTools SNP 229730 229730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1870 SAMTools SNP 229834 229834 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C90%2C27%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.42%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 231585 231585 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C3%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-06%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 233446 233446 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 233543 233543 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C69%2C0:99 scaffold1870 SAMTools SNP 234070 234070 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1870 SAMTools SNP 234444 234444 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold1870 SAMTools SNP 234483 234483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1870 SAMTools SNP 234768 234768 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C32%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1870 SAMTools SNP 234945 234945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1870 SAMTools SNP 235224 235224 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 235379 235379 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C18%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1870 SAMTools SNP 235748 235748 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C44%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C235%2C0:99 scaffold1870 SAMTools SNP 236105 236105 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1870 SAMTools SNP 236131 236131 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.48%2C0.35%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1870 SAMTools SNP 236150 236150 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 236399 236399 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 237306 237306 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C27%2C30%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.06%2C9.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1870 SAMTools SNP 237495 237495 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C6%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.039%2C0.12%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1870 SAMTools SNP 237953 237953 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C2%2C26%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 237967 237967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C16%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-12%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 237972 237972 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C38%2C12%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1870 SAMTools SNP 238119 238119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1870 SAMTools SNP 238599 238599 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C6%2C44%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.6e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1870 SAMTools SNP 238719 238719 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C45%2C53%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1.6e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 238773 238773 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C167%2C28%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1.1e-09%2C1%2C1%2C1.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1870 SAMTools SNP 238994 238994 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C41%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.00027%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 239362 239362 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C4%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold1870 SAMTools SNP 239929 239929 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C46%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C250%2C0:99 scaffold1870 SAMTools SNP 239938 239938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C46%2C48%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C4.5e-129%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 240043 240043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1870 SAMTools SNP 241018 241018 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00059%2C5.4e-06%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1870 SAMTools SNP 245215 245215 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1870 SAMTools SNP 245217 245217 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.019%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1870 SAMTools SNP 245248 245248 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C13%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1870 SAMTools SNP 246179 246179 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.34%2C0.32%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1870 SAMTools SNP 246940 246940 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 247539 247539 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 247931 247931 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 247949 247949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 248021 248021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1870 SAMTools SNP 248051 248051 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.53%2C0.22%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1870 SAMTools SNP 248281 248281 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold1870 SAMTools SNP 249840 249840 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1870 SAMTools SNP 252539 252539 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C218:96 scaffold1870 SAMTools SNP 253508 253508 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C34%2C7%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.11%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 253948 253948 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C68%2C0%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 254893 254893 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.52%2C0.0018%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1870 SAMTools SNP 255692 255692 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C10%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.069%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1870 SAMTools SNP 255874 255874 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.21%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C252:99 scaffold1870 SAMTools SNP 256616 256616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C24%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1870 SAMTools SNP 256676 256676 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C43%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1870 SAMTools SNP 257088 257088 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1870 SAMTools SNP 257299 257299 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.41%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1870 SAMTools SNP 259670 259670 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1870 SAMTools SNP 263918 263918 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1870 SAMTools SNP 263953 263953 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.022%2C1.2e-11%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1870 SAMTools SNP 263993 263993 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C11%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C5.1e-16%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C246:99 scaffold1870 SAMTools SNP 264182 264182 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1870 SAMTools SNP 266054 266054 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C95%2C22%2C83%3BMQ%3D50%3BFQ%3D114%3BPV4%3D8.3e-06%2C1.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C227:99 scaffold1870 SAMTools SNP 266183 266183 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C41%2C20%2C134%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1e-06%2C3.3e-169%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1870 SAMTools SNP 267433 267433 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C57%2C0:99 scaffold1870 SAMTools SNP 268363 268363 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C63%2C0:99 scaffold1870 SAMTools SNP 268413 268413 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1870 SAMTools SNP 268454 268454 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold1870 SAMTools SNP 268639 268639 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C69%2C0:99 scaffold1870 SAMTools SNP 269154 269154 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C16%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C196%2C0:99 scaffold1870 SAMTools SNP 269571 269571 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C78%2C0:99 scaffold1870 SAMTools SNP 269708 269708 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1870 SAMTools SNP 269734 269734 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1870 SAMTools SNP 277155 277155 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.06%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C31:32 scaffold1870 SAMTools SNP 281324 281324 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1870 SAMTools SNP 285465 285465 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1870 SAMTools SNP 285502 285502 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1870 SAMTools SNP 285512 285512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1870 SAMTools SNP 311849 311849 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1870 SAMTools SNP 314317 314317 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1870 SAMTools SNP 314482 314482 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C1%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1870 SAMTools SNP 314898 314898 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.043%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1870 SAMTools SNP 315030 315030 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.29%2C7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1870 SAMTools SNP 315099 315099 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.15%2C8.2e-15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1870 SAMTools SNP 315318 315318 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1870 SAMTools SNP 315644 315644 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1870 SAMTools SNP 315698 315698 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1870 SAMTools SNP 317019 317019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.51%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold1870 SAMTools SNP 317028 317028 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1870 SAMTools SNP 317034 317034 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold1870 SAMTools SNP 317049 317049 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.0057%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C251:99 scaffold1870 SAMTools SNP 317096 317096 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1870 SAMTools SNP 317482 317482 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold1870 SAMTools SNP 317530 317530 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1870 SAMTools SNP 318093 318093 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 318120 318120 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1870 SAMTools SNP 318161 318161 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C243:99 scaffold1870 SAMTools SNP 318848 318848 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1870 SAMTools SNP 330344 330344 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1870 SAMTools SNP 335801 335801 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1870 SAMTools SNP 335856 335856 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1871 SAMTools SNP 20151 20151 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold1871 SAMTools SNP 20599 20599 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1871 SAMTools SNP 24341 24341 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 25752 25752 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 26780 26780 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1871 SAMTools SNP 28913 28913 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.35%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C29:32 scaffold1871 SAMTools SNP 28941 28941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.41%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold1871 SAMTools SNP 29444 29444 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1871 SAMTools SNP 29876 29876 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1871 SAMTools SNP 29880 29880 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1871 SAMTools SNP 30407 30407 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 40249 40249 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1871 SAMTools SNP 45909 45909 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1871 SAMTools SNP 45976 45976 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 49221 49221 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 49228 49228 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 51503 51503 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1871 SAMTools SNP 55990 55990 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C1%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold1871 SAMTools SNP 61281 61281 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C82%2C26%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 61355 61355 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold1871 SAMTools SNP 66041 66041 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 68103 68103 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1871 SAMTools SNP 70581 70581 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1871 SAMTools SNP 72176 72176 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1871 SAMTools SNP 73355 73355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 73573 73573 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1871 SAMTools SNP 74208 74208 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1871 SAMTools SNP 74226 74226 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1871 SAMTools SNP 74247 74247 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1871 SAMTools SNP 74268 74268 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1871 SAMTools SNP 75333 75333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1871 SAMTools SNP 75355 75355 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1871 SAMTools SNP 76663 76663 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C18%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C237:99 scaffold1871 SAMTools SNP 76672 76672 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C0%2C17%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C239:99 scaffold1871 SAMTools SNP 76698 76698 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1871 SAMTools SNP 76701 76701 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 77656 77656 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 77727 77727 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.26%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C249:99 scaffold1871 SAMTools SNP 78219 78219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C175%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 79634 79634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 79642 79642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 79699 79699 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C61%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1871 SAMTools SNP 80259 80259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 80298 80298 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C6%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1871 SAMTools SNP 80585 80585 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.54%2C0.41%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1871 SAMTools SNP 80613 80613 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C46%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1871 SAMTools SNP 81220 81220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C7%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1871 SAMTools SNP 81756 81756 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1871 SAMTools SNP 82253 82253 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C44%2C41%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-06%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 82277 82277 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C46%2C43%3BMQ%3D50%3BFQ%3D-248%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C221%2C0:99 scaffold1871 SAMTools SNP 82491 82491 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 83719 83719 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1871 SAMTools SNP 86023 86023 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1871 SAMTools SNP 86247 86247 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 86256 86256 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C154%2C25%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 86301 86301 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1871 SAMTools SNP 86936 86936 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold1871 SAMTools SNP 86941 86941 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold1871 SAMTools SNP 90927 90927 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 90951 90951 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold1871 SAMTools SNP 90999 90999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 91290 91290 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 91360 91360 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1871 SAMTools SNP 91386 91386 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.12%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1871 SAMTools SNP 91389 91389 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C4%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.67%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1871 SAMTools SNP 91440 91440 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 91625 91625 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.3%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 91682 91682 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C6%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.16%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 92501 92501 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1871 SAMTools SNP 115180 115180 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold1871 SAMTools SNP 115466 115466 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1871 SAMTools SNP 115490 115490 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1871 SAMTools SNP 115676 115676 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C28%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.012%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C91:94 scaffold1871 SAMTools SNP 116300 116300 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C28%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.012%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C91:94 scaffold1871 SAMTools SNP 116342 116342 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1871 SAMTools SNP 118024 118024 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C154:77 scaffold1871 SAMTools SNP 118078 118078 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.49%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C142:99 scaffold1871 SAMTools SNP 118090 118090 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.52%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C191:99 scaffold1871 SAMTools SNP 118093 118093 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1871 SAMTools SNP 119865 119865 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C14%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold1871 SAMTools SNP 120030 120030 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1871 SAMTools SNP 120051 120051 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1871 SAMTools SNP 120072 120072 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C12%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.65%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1871 SAMTools SNP 121436 121436 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 121448 121448 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1871 SAMTools SNP 121469 121469 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 121656 121656 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.58%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1871 SAMTools SNP 121692 121692 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1871 SAMTools SNP 121927 121927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 121999 121999 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0084%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1871 SAMTools SNP 122372 122372 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.2%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1871 SAMTools SNP 122373 122373 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1871 SAMTools SNP 122376 122376 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1871 SAMTools SNP 122634 122634 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1871 SAMTools SNP 122635 122635 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1871 SAMTools SNP 122674 122674 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1871 SAMTools SNP 122680 122680 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1871 SAMTools SNP 123118 123118 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1871 SAMTools SNP 123184 123184 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1871 SAMTools SNP 123415 123415 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 123472 123472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 124055 124055 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1871 SAMTools SNP 124431 124431 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C0%2C29%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1871 SAMTools SNP 124437 124437 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C29%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1871 SAMTools SNP 126798 126798 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1871 SAMTools SNP 129256 129256 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold1871 SAMTools SNP 130200 130200 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 130317 130317 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.64%2C5.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1871 SAMTools SNP 130372 130372 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold1871 SAMTools SNP 130931 130931 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C174:99 scaffold1871 SAMTools SNP 130964 130964 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1871 SAMTools SNP 131018 131018 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1871 SAMTools SNP 131024 131024 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1871 SAMTools SNP 131433 131433 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.011%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C200:30 scaffold1871 SAMTools SNP 131725 131725 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.28%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1871 SAMTools SNP 131800 131800 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1871 SAMTools SNP 131818 131818 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.43%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1871 SAMTools SNP 132061 132061 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.27%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C244:99 scaffold1871 SAMTools SNP 132097 132097 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C0.059%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1871 SAMTools SNP 132741 132741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1871 SAMTools SNP 132786 132786 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C2%2C5%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.65%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1871 SAMTools SNP 133337 133337 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C209:99 scaffold1871 SAMTools SNP 133340 133340 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C177:99 scaffold1871 SAMTools SNP 133341 133341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1871 SAMTools SNP 133427 133427 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1871 SAMTools SNP 133661 133661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1871 SAMTools SNP 133682 133682 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1871 SAMTools SNP 135873 135873 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.28%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1871 SAMTools SNP 136261 136261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1871 SAMTools SNP 136294 136294 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold1871 SAMTools SNP 136306 136306 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1871 SAMTools SNP 136698 136698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1871 SAMTools SNP 153899 153899 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C0.19%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C40:43 scaffold1871 SAMTools SNP 154333 154333 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D43%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1871 SAMTools SNP 154762 154762 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1871 SAMTools SNP 155148 155148 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1872 SAMTools SNP 4734 4734 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.14%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold1872 SAMTools SNP 4758 4758 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1872 SAMTools SNP 5228 5228 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1872 SAMTools SNP 5258 5258 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1872 SAMTools SNP 5959 5959 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1872 SAMTools SNP 7877 7877 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.32%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold1872 SAMTools SNP 7886 7886 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D79.2%3BPV4%3D1%2C0.11%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C107:99 scaffold1872 SAMTools SNP 7904 7904 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C140:74 scaffold1872 SAMTools SNP 7930 7930 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold1872 SAMTools SNP 8460 8460 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 16654 16654 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1872 SAMTools SNP 16669 16669 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.074%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold1872 SAMTools SNP 17497 17497 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1872 SAMTools SNP 17536 17536 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.051%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1872 SAMTools SNP 17548 17548 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1872 SAMTools SNP 19496 19496 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1872 SAMTools SNP 19558 19558 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold1872 SAMTools SNP 27741 27741 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.03%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1872 SAMTools SNP 30078 30078 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C124:41 scaffold1872 SAMTools SNP 30190 30190 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1872 SAMTools SNP 30206 30206 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1872 SAMTools SNP 31285 31285 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1872 SAMTools SNP 31299 31299 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1872 SAMTools SNP 32664 32664 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C228:99 scaffold1872 SAMTools SNP 32745 32745 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C226:71 scaffold1872 SAMTools SNP 32808 32808 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold1872 SAMTools SNP 33558 33558 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.16%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C115:99 scaffold1872 SAMTools SNP 34232 34232 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C223:99 scaffold1872 SAMTools SNP 35028 35028 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.3%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1872 SAMTools SNP 35049 35049 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.16%2C0.13%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1872 SAMTools SNP 35443 35443 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1872 SAMTools SNP 35530 35530 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1872 SAMTools SNP 36999 36999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1872 SAMTools SNP 38008 38008 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1872 SAMTools SNP 40514 40514 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1872 SAMTools SNP 42782 42782 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold1872 SAMTools SNP 43027 43027 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1872 SAMTools SNP 43029 43029 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1872 SAMTools SNP 43030 43030 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 43489 43489 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1872 SAMTools SNP 48738 48738 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1872 SAMTools SNP 48844 48844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 50504 50504 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1872 SAMTools SNP 50512 50512 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1872 SAMTools SNP 50679 50679 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1872 SAMTools SNP 52498 52498 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D15%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C33%2C0:59 scaffold1872 SAMTools SNP 55247 55247 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C24%2C0:45 scaffold1872 SAMTools SNP 55550 55550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1872 SAMTools SNP 55586 55586 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C7%3BMQ%3D48%3BFQ%3D-22%3BPV4%3D1%2C0.31%2C0.4%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold1872 SAMTools SNP 56925 56925 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1872 SAMTools SNP 57169 57169 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1872 SAMTools SNP 57173 57173 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1872 SAMTools SNP 57352 57352 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.25%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1872 SAMTools SNP 57358 57358 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.028%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1872 SAMTools SNP 57415 57415 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1872 SAMTools SNP 58000 58000 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0027%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C209:42 scaffold1872 SAMTools SNP 58030 58030 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1872 SAMTools SNP 58778 58778 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold1872 SAMTools SNP 59441 59441 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1872 SAMTools SNP 59474 59474 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1872 SAMTools SNP 59994 59994 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 60336 60336 88.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C15%2C0:27 scaffold1872 SAMTools SNP 60822 60822 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1872 SAMTools SNP 60825 60825 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1872 SAMTools SNP 61661 61661 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 61673 61673 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 62270 62270 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold1872 SAMTools SNP 62294 62294 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1872 SAMTools SNP 62629 62629 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.24%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C239:99 scaffold1872 SAMTools SNP 62630 62630 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.28%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C239:99 scaffold1872 SAMTools SNP 62636 62636 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C19%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C140:99 scaffold1872 SAMTools SNP 63215 63215 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold1872 SAMTools SNP 63905 63905 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1872 SAMTools SNP 70740 70740 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1872 SAMTools SNP 73425 73425 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C170%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1872 SAMTools SNP 73470 73470 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C82%2C5%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.0051%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1872 SAMTools SNP 74364 74364 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C52%2C20%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1872 SAMTools SNP 76029 76029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1872 SAMTools SNP 76575 76575 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C79%2C10%2C65%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1872 SAMTools SNP 77090 77090 29.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold1872 SAMTools SNP 88350 88350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C40%2C5%3BMQ%3D45%3BFQ%3D172%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1872 SAMTools SNP 88542 88542 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C32%2C5%3BMQ%3D48%3BFQ%3D178%3BPV4%3D0.16%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold1872 SAMTools SNP 88865 88865 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C24%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C47%2C0:91 scaffold1872 SAMTools SNP 89444 89444 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1872 SAMTools SNP 89484 89484 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1872 SAMTools SNP 89550 89550 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1872 SAMTools SNP 89583 89583 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1872 SAMTools SNP 92859 92859 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D34%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C39%2C0:75 scaffold1872 SAMTools SNP 92886 92886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D39%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1872 SAMTools SNP 93800 93800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D35%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1872 SAMTools SNP 93816 93816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D36%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1872 SAMTools SNP 94286 94286 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 94295 94295 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 96286 96286 46.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold1872 SAMTools SNP 96307 96307 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C63%2C0:99 scaffold1872 SAMTools SNP 96511 96511 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 96662 96662 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1872 SAMTools SNP 96675 96675 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1872 SAMTools SNP 97034 97034 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 106639 106639 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1872 SAMTools SNP 107498 107498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 111605 111605 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C30%2C0:57 scaffold1872 SAMTools SNP 111643 111643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 112444 112444 46.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1872 SAMTools SNP 112717 112717 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1872 SAMTools SNP 112753 112753 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1872 SAMTools SNP 116093 116093 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1872 SAMTools SNP 116149 116149 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1872 SAMTools SNP 121215 121215 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C41:44 scaffold1872 SAMTools SNP 122332 122332 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1872 SAMTools SNP 125407 125407 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1872 SAMTools SNP 125850 125850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1872 SAMTools SNP 125853 125853 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1872 SAMTools SNP 128785 128785 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C88%2C1%2C34%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold1872 SAMTools SNP 128847 128847 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1872 SAMTools SNP 128872 128872 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1872 SAMTools SNP 128911 128911 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 131968 131968 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1872 SAMTools SNP 132999 132999 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1872 SAMTools SNP 133003 133003 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold1872 SAMTools SNP 133057 133057 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1872 SAMTools SNP 133067 133067 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1872 SAMTools SNP 135874 135874 19.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold1872 SAMTools SNP 135978 135978 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-08%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1872 SAMTools SNP 136569 136569 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-08%2C0.15%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1872 SAMTools SNP 136577 136577 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C11%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D4.2e-08%2C0.14%2C1%2C8.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1872 SAMTools SNP 136592 136592 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.47%2C1.1e-10%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1872 SAMTools SNP 140410 140410 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 140923 140923 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C144:79 scaffold1872 SAMTools SNP 143413 143413 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 154031 154031 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1872 SAMTools SNP 154069 154069 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1872 SAMTools SNP 159809 159809 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1872 SAMTools SNP 159816 159816 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1872 SAMTools SNP 172947 172947 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold1873 SAMTools SNP 37113 37113 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold1873 SAMTools SNP 43000 43000 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C43%2C75%2C246%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.51%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold1873 SAMTools SNP 43138 43138 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C54%2C32%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C5.7e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1873 SAMTools SNP 43150 43150 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1873 SAMTools SNP 44663 44663 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C9%3BMQ%3D23%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold1873 SAMTools SNP 56589 56589 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1873 SAMTools SNP 70530 70530 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1873 SAMTools SNP 71408 71408 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1873 SAMTools SNP 77745 77745 3.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C2%2C0:5 scaffold1873 SAMTools SNP 77759 77759 3.85 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-29%3BPV4%3D1%2C0.19%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C23%2C21%2C31%2C0%2C29:4 scaffold1873 SAMTools SNP 90448 90448 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 92156 92156 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 94050 94050 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 94084 94084 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1873 SAMTools SNP 95454 95454 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1873 SAMTools SNP 98447 98447 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.38%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1873 SAMTools SNP 98702 98702 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1873 SAMTools SNP 104352 104352 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C21%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.17%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C221:99 scaffold1873 SAMTools SNP 108642 108642 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1873 SAMTools SNP 109314 109314 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1873 SAMTools SNP 109383 109383 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1873 SAMTools SNP 109414 109414 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1873 SAMTools SNP 110454 110454 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 119953 119953 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1873 SAMTools SNP 124586 124586 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1873 SAMTools SNP 126098 126098 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C45%2C0:87 scaffold1873 SAMTools SNP 129004 129004 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1873 SAMTools SNP 142690 142690 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C66%2C0:99 scaffold1873 SAMTools SNP 143025 143025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1873 SAMTools SNP 143448 143448 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1873 SAMTools SNP 143478 143478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1873 SAMTools SNP 150372 150372 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1873 SAMTools SNP 151132 151132 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1873 SAMTools SNP 151267 151267 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1873 SAMTools SNP 151439 151439 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1873 SAMTools SNP 152855 152855 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1873 SAMTools SNP 153417 153417 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1873 SAMTools SNP 154093 154093 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1873 SAMTools SNP 177559 177559 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1873 SAMTools SNP 186759 186759 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1873 SAMTools SNP 187395 187395 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1873 SAMTools SNP 207463 207463 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1873 SAMTools SNP 207502 207502 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1873 SAMTools SNP 207784 207784 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold1873 SAMTools SNP 208035 208035 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 208088 208088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1873 SAMTools SNP 211378 211378 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C15%2C0:27 scaffold1873 SAMTools SNP 211471 211471 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1873 SAMTools SNP 211901 211901 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1873 SAMTools SNP 212065 212065 42.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1873 SAMTools SNP 212209 212209 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold1873 SAMTools SNP 213863 213863 31.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1874 SAMTools SNP 395 395 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 436 436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 878 878 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 935 935 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 1473 1473 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C9%2C0%3BMQ%3D36%3BFQ%3D50%3BPV4%3D1%2C0.027%2C0.33%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C206:80 scaffold1874 SAMTools SNP 2834 2834 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold1874 SAMTools SNP 3133 3133 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1874 SAMTools SNP 3957 3957 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1874 SAMTools SNP 3960 3960 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1874 SAMTools SNP 4222 4222 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1874 SAMTools SNP 4680 4680 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C249:99 scaffold1874 SAMTools SNP 5970 5970 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 6869 6869 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1874 SAMTools SNP 8916 8916 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold1874 SAMTools SNP 9702 9702 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1874 SAMTools SNP 9723 9723 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1874 SAMTools SNP 11712 11712 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C0%3BMQ%3D45%3BFQ%3D38%3BPV4%3D0.019%2C0.0017%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1874 SAMTools SNP 11754 11754 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C12%3BMQ%3D45%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold1874 SAMTools SNP 12785 12785 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold1874 SAMTools SNP 12903 12903 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D45%3BFQ%3D67%3BPV4%3D1%2C0.36%2C0.0052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C217:97 scaffold1874 SAMTools SNP 12912 12912 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C48%2C0:93 scaffold1874 SAMTools SNP 14376 14376 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold1874 SAMTools SNP 15254 15254 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1874 SAMTools SNP 15353 15353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1874 SAMTools SNP 15877 15877 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 15885 15885 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.0024%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 15888 15888 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 16147 16147 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1874 SAMTools SNP 16153 16153 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.49%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1874 SAMTools SNP 16465 16465 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1874 SAMTools SNP 17399 17399 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C21%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C248:99 scaffold1874 SAMTools SNP 17698 17698 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.068%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold1874 SAMTools SNP 17704 17704 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1874 SAMTools SNP 18751 18751 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold1874 SAMTools SNP 18753 18753 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.54%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C234:99 scaffold1874 SAMTools SNP 19319 19319 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C33%2C0:63 scaffold1874 SAMTools SNP 19334 19334 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C180:99 scaffold1874 SAMTools SNP 19340 19340 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold1874 SAMTools SNP 19985 19985 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1874 SAMTools SNP 20854 20854 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C230:99 scaffold1874 SAMTools SNP 21665 21665 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1874 SAMTools SNP 21707 21707 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.066%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold1874 SAMTools SNP 21909 21909 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1874 SAMTools SNP 21957 21957 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 22349 22349 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 22460 22460 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1874 SAMTools SNP 22481 22481 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1874 SAMTools SNP 23070 23070 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1874 SAMTools SNP 24952 24952 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C213:67 scaffold1874 SAMTools SNP 24973 24973 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1874 SAMTools SNP 25393 25393 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1874 SAMTools SNP 25433 25433 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.033%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C71:73 scaffold1874 SAMTools SNP 27717 27717 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C1%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1874 SAMTools SNP 31611 31611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 32648 32648 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 32681 32681 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 32997 32997 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1874 SAMTools SNP 33153 33153 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1874 SAMTools SNP 33189 33189 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 33192 33192 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 33647 33647 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 34005 34005 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 34095 34095 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1874 SAMTools SNP 34101 34101 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1874 SAMTools SNP 35377 35377 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D48%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1874 SAMTools SNP 35410 35410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C9%3BMQ%3D49%3BFQ%3D-47%3BPV4%3D1%2C0.43%2C0.41%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold1874 SAMTools SNP 36755 36755 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1874 SAMTools SNP 36764 36764 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1874 SAMTools SNP 36922 36922 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 36964 36964 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 36973 36973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 36997 36997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1874 SAMTools SNP 37024 37024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.43%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 39083 39083 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1874 SAMTools SNP 39096 39096 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.56%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1874 SAMTools SNP 40520 40520 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C25%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1874 SAMTools SNP 40542 40542 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0015%2C0.15%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1874 SAMTools SNP 40879 40879 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C60%2C0:99 scaffold1874 SAMTools SNP 41151 41151 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C72%2C0:99 scaffold1874 SAMTools SNP 44454 44454 31.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold1874 SAMTools SNP 48058 48058 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1874 SAMTools SNP 63090 63090 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 63107 63107 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1874 SAMTools SNP 63582 63582 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 63615 63615 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold1874 SAMTools SNP 64327 64327 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1874 SAMTools SNP 64339 64339 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1874 SAMTools SNP 64504 64504 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1874 SAMTools SNP 64558 64558 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1874 SAMTools SNP 64757 64757 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1874 SAMTools SNP 64772 64772 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 65850 65850 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1874 SAMTools SNP 65885 65885 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1874 SAMTools SNP 65902 65902 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1874 SAMTools SNP 66382 66382 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1874 SAMTools SNP 67198 67198 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 67267 67267 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 67324 67324 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1874 SAMTools SNP 69646 69646 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold1874 SAMTools SNP 69667 69667 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D47%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C157:99 scaffold1874 SAMTools SNP 71528 71528 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1874 SAMTools SNP 71585 71585 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 71597 71597 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1874 SAMTools SNP 71660 71660 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1874 SAMTools SNP 72449 72449 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1874 SAMTools SNP 73315 73315 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1874 SAMTools SNP 73528 73528 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1874 SAMTools SNP 73546 73546 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C26:29 scaffold1874 SAMTools SNP 117440 117440 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1874 SAMTools SNP 117455 117455 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold1874 SAMTools SNP 117494 117494 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1874 SAMTools SNP 118499 118499 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 118552 118552 25.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold1874 SAMTools SNP 218611 218611 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1874 SAMTools SNP 218629 218629 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 218644 218644 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1874 SAMTools SNP 228888 228888 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1874 SAMTools SNP 228937 228937 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.61%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1874 SAMTools SNP 232628 232628 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1874 SAMTools SNP 251563 251563 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C73%2C13%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D5.4e-10%2C0.0051%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1874 SAMTools SNP 252090 252090 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1874 SAMTools SNP 253651 253651 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.074%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold1874 SAMTools SNP 253660 253660 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1874 SAMTools SNP 253681 253681 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C247:99 scaffold1874 SAMTools SNP 257012 257012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1874 SAMTools SNP 257614 257614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1874 SAMTools SNP 257629 257629 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1874 SAMTools SNP 258689 258689 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.1%2C0.26%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C251:99 scaffold1874 SAMTools SNP 269704 269704 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1874 SAMTools SNP 269705 269705 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1874 SAMTools SNP 270126 270126 45.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold1874 SAMTools SNP 289229 289229 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold1874 SAMTools SNP 289256 289256 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1874 SAMTools SNP 296223 296223 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1874 SAMTools SNP 296778 296778 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1875 SAMTools SNP 29723 29723 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1875 SAMTools SNP 46581 46581 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1875 SAMTools SNP 46601 46601 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1875 SAMTools SNP 47943 47943 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C26:29 scaffold1875 SAMTools SNP 56505 56505 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C0%2C111%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1875 SAMTools SNP 56965 56965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C2%2C88%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1875 SAMTools SNP 58597 58597 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1875 SAMTools SNP 59030 59030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C101%2C14%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.24%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1875 SAMTools SNP 75105 75105 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1875 SAMTools SNP 96830 96830 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1875 SAMTools SNP 108694 108694 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1875 SAMTools SNP 108750 108750 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 494 494 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1876 SAMTools SNP 651 651 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 1232 1232 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 1276 1276 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 1961 1961 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1876 SAMTools SNP 2011 2011 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1876 SAMTools SNP 2578 2578 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1876 SAMTools SNP 2922 2922 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 2937 2937 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 3550 3550 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1876 SAMTools SNP 4373 4373 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1876 SAMTools SNP 4381 4381 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1876 SAMTools SNP 7234 7234 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1876 SAMTools SNP 7333 7333 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold1876 SAMTools SNP 8154 8154 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1876 SAMTools SNP 8528 8528 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1876 SAMTools SNP 8546 8546 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1876 SAMTools SNP 8574 8574 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 8609 8609 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1876 SAMTools SNP 9356 9356 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 10009 10009 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.47%2C0.033%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1876 SAMTools SNP 14688 14688 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1876 SAMTools SNP 15213 15213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1876 SAMTools SNP 18934 18934 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold1876 SAMTools SNP 19101 19101 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold1876 SAMTools SNP 19735 19735 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1876 SAMTools SNP 19774 19774 37.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1876 SAMTools SNP 21330 21330 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1876 SAMTools SNP 21345 21345 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C15%2C0:27 scaffold1876 SAMTools SNP 21912 21912 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1876 SAMTools SNP 21969 21969 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1876 SAMTools SNP 22876 22876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1876 SAMTools SNP 25027 25027 59.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold1876 SAMTools SNP 31315 31315 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.57%2C3.4e-33%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1876 SAMTools SNP 33602 33602 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1876 SAMTools SNP 33778 33778 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C52%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1876 SAMTools SNP 34159 34159 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1876 SAMTools SNP 35021 35021 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1876 SAMTools SNP 35053 35053 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C5%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1876 SAMTools SNP 39529 39529 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold1876 SAMTools SNP 39547 39547 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C146:99 scaffold1876 SAMTools SNP 40861 40861 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.57%2C0.0026%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C225:75 scaffold1876 SAMTools SNP 41347 41347 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1876 SAMTools SNP 41365 41365 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1876 SAMTools SNP 41390 41390 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1876 SAMTools SNP 42215 42215 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1876 SAMTools SNP 42814 42814 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 44198 44198 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1876 SAMTools SNP 45073 45073 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 45124 45124 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1876 SAMTools SNP 54810 54810 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1876 SAMTools SNP 54848 54848 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold1876 SAMTools SNP 54877 54877 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold1876 SAMTools SNP 58105 58105 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 58651 58651 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold1876 SAMTools SNP 60845 60845 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1876 SAMTools SNP 62506 62506 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold1876 SAMTools SNP 62655 62655 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold1876 SAMTools SNP 62684 62684 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold1876 SAMTools SNP 66638 66638 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1876 SAMTools SNP 66691 66691 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1876 SAMTools SNP 66996 66996 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1876 SAMTools SNP 69685 69685 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1876 SAMTools SNP 69707 69707 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1876 SAMTools SNP 70127 70127 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1876 SAMTools SNP 70835 70835 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D0.25%2C0.00035%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold1876 SAMTools SNP 71645 71645 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C3.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C195:82 scaffold1876 SAMTools SNP 71938 71938 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D26.9%3BPV4%3D0.048%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C71:57 scaffold1876 SAMTools SNP 75057 75057 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold1877 SAMTools SNP 56724 56724 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold1877 SAMTools SNP 61453 61453 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 61459 61459 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1877 SAMTools SNP 62844 62844 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 65205 65205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C34%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1877 SAMTools SNP 65340 65340 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1877 SAMTools SNP 65348 65348 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1877 SAMTools SNP 65622 65622 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1877 SAMTools SNP 69268 69268 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1877 SAMTools SNP 69490 69490 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C33%2C0:63 scaffold1877 SAMTools SNP 72366 72366 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D34%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C39%2C0:75 scaffold1877 SAMTools SNP 78974 78974 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1877 SAMTools SNP 82022 82022 18.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C2%2C53%2C5%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D0.059%2C4.6e-34%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C1:4 scaffold1877 SAMTools SNP 82687 82687 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold1877 SAMTools SNP 83705 83705 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.13%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C183:99 scaffold1877 SAMTools SNP 84440 84440 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.59%2C2.6e-07%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1877 SAMTools SNP 84957 84957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1877 SAMTools SNP 85545 85545 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0026%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1877 SAMTools SNP 85746 85746 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1877 SAMTools SNP 85752 85752 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1877 SAMTools SNP 86100 86100 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1877 SAMTools SNP 86127 86127 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1877 SAMTools SNP 86223 86223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1877 SAMTools SNP 86815 86815 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 87693 87693 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1877 SAMTools SNP 87716 87716 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1877 SAMTools SNP 87721 87721 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.073%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1877 SAMTools SNP 87950 87950 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold1877 SAMTools SNP 88091 88091 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1877 SAMTools SNP 88497 88497 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold1877 SAMTools SNP 89070 89070 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1877 SAMTools SNP 89091 89091 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold1877 SAMTools SNP 89106 89106 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold1877 SAMTools SNP 90485 90485 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D5.73%3BPV4%3D1%2C7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C32:35 scaffold1877 SAMTools SNP 92223 92223 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.43%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold1877 SAMTools SNP 92256 92256 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold1877 SAMTools SNP 92265 92265 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1877 SAMTools SNP 92280 92280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1877 SAMTools SNP 93212 93212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1877 SAMTools SNP 93248 93248 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 93702 93702 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C36%2C0:69 scaffold1877 SAMTools SNP 93710 93710 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.018%2C0.28%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1877 SAMTools SNP 93741 93741 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1877 SAMTools SNP 94371 94371 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C2%3BMQ%3D48%3BFQ%3D115%3BPV4%3D1%2C0.2%2C0.25%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C142:99 scaffold1877 SAMTools SNP 94539 94539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C17%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.16%2C0.4%2C0.15%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 95971 95971 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.045%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1877 SAMTools SNP 97098 97098 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.23%2C0.065%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1877 SAMTools SNP 97563 97563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 97610 97610 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C11%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D9.4e-06%2C2.2e-07%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1877 SAMTools SNP 105302 105302 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1877 SAMTools SNP 105308 105308 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.18%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1877 SAMTools SNP 105622 105622 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C7%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.18%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold1877 SAMTools SNP 105634 105634 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 105651 105651 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 106194 106194 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C0.19%2C1%2C1.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold1877 SAMTools SNP 106202 106202 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C51%2C0:99 scaffold1877 SAMTools SNP 106271 106271 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.083%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C247:99 scaffold1877 SAMTools SNP 108854 108854 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1877 SAMTools SNP 108870 108870 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1877 SAMTools SNP 108874 108874 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1877 SAMTools SNP 109223 109223 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1877 SAMTools SNP 109277 109277 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1877 SAMTools SNP 109346 109346 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1877 SAMTools SNP 109355 109355 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1877 SAMTools SNP 110721 110721 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1877 SAMTools SNP 110730 110730 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1877 SAMTools SNP 112223 112223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1877 SAMTools SNP 112268 112268 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1877 SAMTools SNP 112554 112554 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C33%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 112584 112584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 113159 113159 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 113235 113235 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C16%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.55%2C2.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C113:99 scaffold1877 SAMTools SNP 113324 113324 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1877 SAMTools SNP 114607 114607 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1877 SAMTools SNP 114619 114619 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1877 SAMTools SNP 114646 114646 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1877 SAMTools SNP 116054 116054 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D23%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C126%2C0:99 scaffold1877 SAMTools SNP 116082 116082 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C57%3BMQ%3D36%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold1877 SAMTools SNP 117029 117029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C67%3BMQ%3D36%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1877 SAMTools SNP 118568 118568 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1877 SAMTools SNP 118620 118620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1877 SAMTools SNP 119130 119130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1877 SAMTools SNP 119131 119131 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.42%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C150:99 scaffold1877 SAMTools SNP 119320 119320 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C59%2C4%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.0001%2C0.00052%2C1%2C1.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C244:64 scaffold1877 SAMTools SNP 119378 119378 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1877 SAMTools SNP 126598 126598 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.6e-06%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C110:83 scaffold1877 SAMTools SNP 177305 177305 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1877 SAMTools SNP 208212 208212 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1877 SAMTools SNP 209121 209121 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.064%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1877 SAMTools SNP 209183 209183 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C50%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 209201 209201 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 209987 209987 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C47%2C3%2C9%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold1877 SAMTools SNP 210023 210023 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C54%2C2%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.19%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold1877 SAMTools SNP 211225 211225 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1877 SAMTools SNP 211227 211227 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1877 SAMTools SNP 211239 211239 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1877 SAMTools SNP 211269 211269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 211341 211341 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold1877 SAMTools SNP 212224 212224 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1877 SAMTools SNP 212230 212230 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1877 SAMTools SNP 212303 212303 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1877 SAMTools SNP 212691 212691 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1877 SAMTools SNP 212730 212730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1877 SAMTools SNP 212751 212751 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1877 SAMTools SNP 212757 212757 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1877 SAMTools SNP 216045 216045 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C2%3BMQ%3D37%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C204:99 scaffold1877 SAMTools SNP 218952 218952 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold1877 SAMTools SNP 219111 219111 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C206:99 scaffold1877 SAMTools SNP 219117 219117 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C173:99 scaffold1877 SAMTools SNP 219594 219594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold1877 SAMTools SNP 221480 221480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 221538 221538 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1877 SAMTools SNP 221561 221561 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1877 SAMTools SNP 224733 224733 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1877 SAMTools SNP 224864 224864 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1877 SAMTools SNP 238911 238911 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 243395 243395 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C224:99 scaffold1877 SAMTools SNP 262180 262180 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 264004 264004 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1877 SAMTools SNP 264831 264831 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1877 SAMTools SNP 270223 270223 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1877 SAMTools SNP 272261 272261 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 273823 273823 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 273893 273893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1877 SAMTools SNP 273997 273997 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1877 SAMTools SNP 274101 274101 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1877 SAMTools SNP 279480 279480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 280643 280643 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 280662 280662 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1877 SAMTools SNP 280887 280887 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1877 SAMTools SNP 281402 281402 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 287219 287219 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 288031 288031 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1877 SAMTools SNP 288089 288089 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1877 SAMTools SNP 288372 288372 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1877 SAMTools SNP 288399 288399 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1877 SAMTools SNP 289522 289522 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1877 SAMTools SNP 289797 289797 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.09%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold1877 SAMTools SNP 289811 289811 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold1877 SAMTools SNP 289826 289826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 294729 294729 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1877 SAMTools SNP 294747 294747 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C1%2C38%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1877 SAMTools SNP 295990 295990 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C26%2C18%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.07%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1877 SAMTools SNP 296071 296071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C144%2C6%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1877 SAMTools SNP 297161 297161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1877 SAMTools SNP 305096 305096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1877 SAMTools SNP 305117 305117 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold1877 SAMTools SNP 306078 306078 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1877 SAMTools SNP 306085 306085 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1877 SAMTools SNP 306087 306087 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1878 SAMTools SNP 7239 7239 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1878 SAMTools SNP 7251 7251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1878 SAMTools SNP 7455 7455 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1878 SAMTools SNP 7462 7462 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.46%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1878 SAMTools SNP 7545 7545 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C1%2C28%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.15%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1878 SAMTools SNP 7746 7746 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C45%2C0%2C27%3BMQ%3D50%3BFQ%3D157%3BPV4%3D6.4e-05%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold1878 SAMTools SNP 7835 7835 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1878 SAMTools SNP 7836 7836 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1878 SAMTools SNP 14035 14035 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C51%2C2%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1878 SAMTools SNP 16652 16652 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C67%2C2%2C19%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00032%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1878 SAMTools SNP 29941 29941 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1878 SAMTools SNP 31515 31515 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C15%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C242:47 scaffold1878 SAMTools SNP 40548 40548 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1878 SAMTools SNP 66240 66240 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1878 SAMTools SNP 68607 68607 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1878 SAMTools SNP 75755 75755 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1878 SAMTools SNP 76275 76275 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1878 SAMTools SNP 76879 76879 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.017%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1878 SAMTools SNP 76908 76908 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1878 SAMTools SNP 77010 77010 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1878 SAMTools SNP 77027 77027 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1878 SAMTools SNP 77715 77715 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold1878 SAMTools SNP 77718 77718 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C182:31 scaffold1878 SAMTools SNP 77856 77856 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1878 SAMTools SNP 77877 77877 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1878 SAMTools SNP 78124 78124 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1878 SAMTools SNP 78137 78137 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1878 SAMTools SNP 78855 78855 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1878 SAMTools SNP 78858 78858 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1878 SAMTools SNP 78967 78967 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1878 SAMTools SNP 82533 82533 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1878 SAMTools SNP 82626 82626 4.75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1878 SAMTools SNP 91529 91529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C6%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1878 SAMTools SNP 92893 92893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C5%3BMQ%3D50%3BFQ%3D-208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1878 SAMTools SNP 93120 93120 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C67%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1878 SAMTools SNP 93132 93132 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C67%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1878 SAMTools SNP 93816 93816 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1878 SAMTools SNP 93829 93829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C25%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1878 SAMTools SNP 94765 94765 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C56%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1878 SAMTools SNP 95856 95856 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1878 SAMTools SNP 95890 95890 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1878 SAMTools SNP 101335 101335 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.33%2C0.092%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C236:99 scaffold1878 SAMTools SNP 101368 101368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1878 SAMTools SNP 103603 103603 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1878 SAMTools SNP 103645 103645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1878 SAMTools SNP 103672 103672 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1878 SAMTools SNP 103687 103687 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.082%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1878 SAMTools SNP 104194 104194 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.012%2C0.3%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1878 SAMTools SNP 107538 107538 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C208:46 scaffold1878 SAMTools SNP 107611 107611 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C21%2C0:39 scaffold1878 SAMTools SNP 107631 107631 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1878 SAMTools SNP 107650 107650 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C147:99 scaffold1878 SAMTools SNP 107766 107766 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1878 SAMTools SNP 117515 117515 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1878 SAMTools SNP 117541 117541 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1878 SAMTools SNP 117986 117986 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1878 SAMTools SNP 117992 117992 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 1038 1038 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 1974 1974 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1879 SAMTools SNP 2178 2178 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold1879 SAMTools SNP 2895 2895 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1879 SAMTools SNP 2922 2922 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1879 SAMTools SNP 19583 19583 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C25%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C3.5e-57%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1879 SAMTools SNP 20731 20731 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1879 SAMTools SNP 20805 20805 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C2.4e-17%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C109:63 scaffold1879 SAMTools SNP 20979 20979 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold1879 SAMTools SNP 22450 22450 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold1879 SAMTools SNP 22790 22790 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1879 SAMTools SNP 23272 23272 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1879 SAMTools SNP 25893 25893 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold1879 SAMTools SNP 26000 26000 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1879 SAMTools SNP 26754 26754 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1879 SAMTools SNP 27133 27133 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1879 SAMTools SNP 27288 27288 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C232:99 scaffold1879 SAMTools SNP 27298 27298 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1879 SAMTools SNP 27299 27299 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold1879 SAMTools SNP 27710 27710 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.007%2C0.044%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1879 SAMTools SNP 27725 27725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1879 SAMTools SNP 27998 27998 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C152:99 scaffold1879 SAMTools SNP 28435 28435 37.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1879 SAMTools SNP 29016 29016 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold1879 SAMTools SNP 29058 29058 14.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold1879 SAMTools SNP 29097 29097 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold1879 SAMTools SNP 29117 29117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1879 SAMTools SNP 29536 29536 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.5e-10%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C196:34 scaffold1879 SAMTools SNP 29698 29698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1879 SAMTools SNP 30054 30054 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1879 SAMTools SNP 30102 30102 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold1879 SAMTools SNP 30532 30532 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1879 SAMTools SNP 30933 30933 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1879 SAMTools SNP 31033 31033 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1879 SAMTools SNP 32978 32978 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C149:43 scaffold1879 SAMTools SNP 33014 33014 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C104:99 scaffold1879 SAMTools SNP 35625 35625 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 35640 35640 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 36682 36682 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C158:39 scaffold1879 SAMTools SNP 36776 36776 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.59%2C0.2%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C213:99 scaffold1879 SAMTools SNP 37247 37247 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C214:48 scaffold1879 SAMTools SNP 37777 37777 86.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold1879 SAMTools SNP 38467 38467 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1879 SAMTools SNP 38587 38587 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 39889 39889 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1879 SAMTools SNP 39976 39976 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 40389 40389 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1879 SAMTools SNP 40410 40410 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1879 SAMTools SNP 40440 40440 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1879 SAMTools SNP 40848 40848 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C156:99 scaffold1879 SAMTools SNP 41061 41061 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C5.7e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C74:44 scaffold1879 SAMTools SNP 41085 41085 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C80:79 scaffold1879 SAMTools SNP 41142 41142 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1879 SAMTools SNP 41178 41178 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 43441 43441 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1879 SAMTools SNP 44276 44276 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 45401 45401 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold1879 SAMTools SNP 45429 45429 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1879 SAMTools SNP 45534 45534 67.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1879 SAMTools SNP 45576 45576 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1879 SAMTools SNP 45591 45591 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1879 SAMTools SNP 49691 49691 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 49772 49772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 53556 53556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 74714 74714 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C2%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1879 SAMTools SNP 79588 79588 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C241:99 scaffold1879 SAMTools SNP 79594 79594 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1879 SAMTools SNP 80482 80482 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 81044 81044 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 81076 81076 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 81104 81104 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 81135 81135 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C228:99 scaffold1879 SAMTools SNP 81144 81144 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1879 SAMTools SNP 81693 81693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C27%2C29%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold1879 SAMTools SNP 81717 81717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C31%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1879 SAMTools SNP 82138 82138 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C11%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1879 SAMTools SNP 82389 82389 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1879 SAMTools SNP 82645 82645 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.22%2C0.45%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C182:99 scaffold1879 SAMTools SNP 82721 82721 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C249:72 scaffold1879 SAMTools SNP 82902 82902 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C105%2C0:99 scaffold1879 SAMTools SNP 82957 82957 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold1879 SAMTools SNP 82968 82968 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C29%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1879 SAMTools SNP 83742 83742 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.29%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 84215 84215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 84256 84256 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C37%2C0%2C11%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.026%2C2.3e-12%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1879 SAMTools SNP 84406 84406 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1879 SAMTools SNP 85436 85436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 85451 85451 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 87272 87272 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1879 SAMTools SNP 87333 87333 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C8%2C71%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 88113 88113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C252%2C18%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1879 SAMTools SNP 88176 88176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1879 SAMTools SNP 88298 88298 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold1879 SAMTools SNP 89288 89288 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold1879 SAMTools SNP 92691 92691 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 93531 93531 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 93594 93594 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 93795 93795 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 93809 93809 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1879 SAMTools SNP 95596 95596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold1879 SAMTools SNP 96183 96183 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0193%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1879 SAMTools SNP 98090 98090 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold1879 SAMTools SNP 99114 99114 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1879 SAMTools SNP 99491 99491 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 99814 99814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C30%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1879 SAMTools SNP 99967 99967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C19%3BMQ%3D50%3BFQ%3D-104%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C77%2C0:99 scaffold1879 SAMTools SNP 100295 100295 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D83%3BPV4%3D2.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1879 SAMTools SNP 100439 100439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1879 SAMTools SNP 104297 104297 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1879 SAMTools SNP 104330 104330 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1879 SAMTools SNP 107059 107059 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 107090 107090 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1879 SAMTools SNP 107755 107755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C6%2C26%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.07%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1879 SAMTools SNP 108332 108332 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1879 SAMTools SNP 108473 108473 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1879 SAMTools SNP 108801 108801 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C150:99 scaffold1879 SAMTools SNP 108840 108840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 109597 109597 92.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1879 SAMTools SNP 109817 109817 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold1879 SAMTools SNP 113711 113711 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C21%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 113736 113736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C37%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1879 SAMTools SNP 115050 115050 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1879 SAMTools SNP 115428 115428 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1879 SAMTools SNP 115438 115438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C9%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.6%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C153:99 scaffold1879 SAMTools SNP 115920 115920 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.16%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1879 SAMTools SNP 116240 116240 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1879 SAMTools SNP 116806 116806 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1879 SAMTools SNP 117545 117545 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C37%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C135%2C0:99 scaffold1879 SAMTools SNP 117638 117638 14.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1879 SAMTools SNP 117800 117800 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D37.6%3BPV4%3D1%2C6.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C66:68 scaffold1879 SAMTools SNP 118397 118397 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1879 SAMTools SNP 118586 118586 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1879 SAMTools SNP 118643 118643 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1879 SAMTools SNP 118862 118862 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold1879 SAMTools SNP 118912 118912 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 122095 122095 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1879 SAMTools SNP 122363 122363 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold1879 SAMTools SNP 122375 122375 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold188 SAMTools SNP 4874 4874 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 4951 4951 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 4957 4957 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 46863 46863 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold188 SAMTools SNP 62102 62102 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C48%2C0:93 scaffold188 SAMTools SNP 63362 63362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold188 SAMTools SNP 63447 63447 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C69%2C0:99 scaffold188 SAMTools SNP 63464 63464 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold188 SAMTools SNP 64482 64482 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold188 SAMTools SNP 65538 65538 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold188 SAMTools SNP 65957 65957 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold188 SAMTools SNP 66009 66009 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 66678 66678 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold188 SAMTools SNP 66687 66687 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold188 SAMTools SNP 67108 67108 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold188 SAMTools SNP 67123 67123 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold188 SAMTools SNP 67384 67384 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold188 SAMTools SNP 67860 67860 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 67887 67887 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 75754 75754 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold188 SAMTools SNP 75847 75847 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold188 SAMTools SNP 75898 75898 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 75912 75912 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold188 SAMTools SNP 75937 75937 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.063%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold188 SAMTools SNP 75951 75951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C24%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.021%2C0.081%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold188 SAMTools SNP 76237 76237 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.11%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C137:99 scaffold188 SAMTools SNP 76302 76302 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0027%2C5.6e-09%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C60:63 scaffold188 SAMTools SNP 76638 76638 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold188 SAMTools SNP 76945 76945 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold188 SAMTools SNP 76952 76952 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 77204 77204 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold188 SAMTools SNP 77222 77222 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold188 SAMTools SNP 77625 77625 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold188 SAMTools SNP 77666 77666 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold188 SAMTools SNP 77830 77830 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C34%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold188 SAMTools SNP 77878 77878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold188 SAMTools SNP 78028 78028 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold188 SAMTools SNP 78540 78540 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold188 SAMTools SNP 78771 78771 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold188 SAMTools SNP 78964 78964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold188 SAMTools SNP 79130 79130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold188 SAMTools SNP 79171 79171 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold188 SAMTools SNP 79496 79496 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold188 SAMTools SNP 82462 82462 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 90644 90644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold188 SAMTools SNP 91465 91465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold188 SAMTools SNP 91501 91501 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold188 SAMTools SNP 91938 91938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold188 SAMTools SNP 92276 92276 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold188 SAMTools SNP 93137 93137 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold188 SAMTools SNP 93146 93146 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold188 SAMTools SNP 93347 93347 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold188 SAMTools SNP 94546 94546 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold188 SAMTools SNP 95017 95017 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold188 SAMTools SNP 102107 102107 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 102110 102110 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 103762 103762 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold188 SAMTools SNP 103826 103826 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C184:49 scaffold188 SAMTools SNP 111263 111263 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C15%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.19%2C2.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold188 SAMTools SNP 146910 146910 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold188 SAMTools SNP 148419 148419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C25%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold188 SAMTools SNP 150793 150793 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C44%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.5e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold188 SAMTools SNP 151056 151056 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 151597 151597 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold188 SAMTools SNP 152879 152879 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C38%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D3.6e-07%2C4.9e-12%2C1%2C3.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold188 SAMTools SNP 152880 152880 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C16%2C19%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0031%2C5.3e-05%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold188 SAMTools SNP 152882 152882 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0072%2C3.3e-05%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold188 SAMTools SNP 156709 156709 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold188 SAMTools SNP 156793 156793 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C1%2C11%3BMQ%3D47%3BFQ%3D174%3BPV4%3D0.0059%2C1%2C0.23%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold188 SAMTools SNP 158241 158241 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold188 SAMTools SNP 162091 162091 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C26%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold188 SAMTools SNP 162133 162133 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.041%2C0.0026%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold188 SAMTools SNP 162295 162295 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold188 SAMTools SNP 163418 163418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold188 SAMTools SNP 163441 163441 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold188 SAMTools SNP 163477 163477 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 163489 163489 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold188 SAMTools SNP 163493 163493 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C229:64 scaffold188 SAMTools SNP 163916 163916 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C7.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold188 SAMTools SNP 163999 163999 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold188 SAMTools SNP 164006 164006 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold188 SAMTools SNP 167405 167405 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold188 SAMTools SNP 169989 169989 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold188 SAMTools SNP 170050 170050 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold188 SAMTools SNP 174073 174073 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 183831 183831 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold188 SAMTools SNP 188737 188737 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold188 SAMTools SNP 188783 188783 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 188979 188979 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 189003 189003 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 189845 189845 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold188 SAMTools SNP 213199 213199 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 759 759 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1880 SAMTools SNP 765 765 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1880 SAMTools SNP 882 882 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1880 SAMTools SNP 2154 2154 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C225:99 scaffold1880 SAMTools SNP 2268 2268 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1880 SAMTools SNP 3720 3720 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold1880 SAMTools SNP 4640 4640 29.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold1880 SAMTools SNP 4780 4780 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C51%2C0:99 scaffold1880 SAMTools SNP 4840 4840 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold1880 SAMTools SNP 5650 5650 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1880 SAMTools SNP 5680 5680 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C24%2C0:45 scaffold1880 SAMTools SNP 5773 5773 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C24%2C0:45 scaffold1880 SAMTools SNP 5794 5794 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1880 SAMTools SNP 6482 6482 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1880 SAMTools SNP 6512 6512 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1880 SAMTools SNP 8878 8878 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1880 SAMTools SNP 9567 9567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1880 SAMTools SNP 10108 10108 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 10141 10141 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 10765 10765 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 10867 10867 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1880 SAMTools SNP 19215 19215 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1880 SAMTools SNP 19320 19320 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1880 SAMTools SNP 19326 19326 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold1880 SAMTools SNP 22713 22713 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1880 SAMTools SNP 31572 31572 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C104:99 scaffold1880 SAMTools SNP 45427 45427 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1880 SAMTools SNP 60630 60630 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 60791 60791 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.6%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold1880 SAMTools SNP 61279 61279 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C0.2%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1880 SAMTools SNP 62191 62191 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1880 SAMTools SNP 62201 62201 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold1880 SAMTools SNP 62644 62644 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1880 SAMTools SNP 62852 62852 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C3%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1880 SAMTools SNP 64066 64066 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C61%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1880 SAMTools SNP 64082 64082 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C48%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.55%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold1880 SAMTools SNP 64146 64146 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.48%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold1880 SAMTools SNP 69838 69838 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1880 SAMTools SNP 69892 69892 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1880 SAMTools SNP 70281 70281 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1880 SAMTools SNP 70317 70317 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.004%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C239:99 scaffold1880 SAMTools SNP 70796 70796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1880 SAMTools SNP 70814 70814 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1880 SAMTools SNP 71219 71219 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 72260 72260 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C0.02%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C166:99 scaffold1880 SAMTools SNP 72673 72673 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 72752 72752 98.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold1880 SAMTools SNP 72828 72828 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1880 SAMTools SNP 76328 76328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1880 SAMTools SNP 76409 76409 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C78%2C0:99 scaffold1880 SAMTools SNP 76425 76425 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold1880 SAMTools SNP 76466 76466 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C3%2C11%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.22%2C0.38%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1880 SAMTools SNP 77164 77164 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.034%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C71:74 scaffold1880 SAMTools SNP 77208 77208 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1880 SAMTools SNP 77242 77242 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold1880 SAMTools SNP 77260 77260 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C116:99 scaffold1880 SAMTools SNP 77610 77610 103 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold1880 SAMTools SNP 77647 77647 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1880 SAMTools SNP 78275 78275 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1880 SAMTools SNP 78308 78308 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1880 SAMTools SNP 78315 78315 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1880 SAMTools SNP 78323 78323 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.49%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1880 SAMTools SNP 78659 78659 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold1880 SAMTools SNP 78662 78662 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1880 SAMTools SNP 78719 78719 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C143:99 scaffold1880 SAMTools SNP 78752 78752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1880 SAMTools SNP 80897 80897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1880 SAMTools SNP 80972 80972 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.029%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C197:99 scaffold1880 SAMTools SNP 81517 81517 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C3%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 81699 81699 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1880 SAMTools SNP 84964 84964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.053%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1880 SAMTools SNP 84982 84982 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C17%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0053%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold1880 SAMTools SNP 85398 85398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.018%2C0.026%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold1880 SAMTools SNP 85509 85509 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C2%2C17%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.17%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1880 SAMTools SNP 85512 85512 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 86210 86210 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1880 SAMTools SNP 86231 86231 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 86372 86372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 86643 86643 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 86661 86661 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 87577 87577 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 88818 88818 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1880 SAMTools SNP 88857 88857 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1880 SAMTools SNP 89127 89127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1880 SAMTools SNP 89156 89156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1880 SAMTools SNP 89346 89346 43.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold1880 SAMTools SNP 89454 89454 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C7.7e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C234:51 scaffold1880 SAMTools SNP 89480 89480 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 89632 89632 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 90155 90155 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 90167 90167 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 90891 90891 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C6%3BMQ%3D49%3BFQ%3D48%3BPV4%3D0.53%2C0.056%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1880 SAMTools SNP 90897 90897 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C3%3BMQ%3D49%3BFQ%3D7.8%3BPV4%3D1%2C0.066%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1880 SAMTools SNP 91192 91192 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1880 SAMTools SNP 91914 91914 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C3%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C132%2C0:99 scaffold1880 SAMTools SNP 92175 92175 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C80:59 scaffold1880 SAMTools SNP 102371 102371 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1880 SAMTools SNP 102435 102435 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1880 SAMTools SNP 102674 102674 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 118259 118259 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1880 SAMTools SNP 118554 118554 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1880 SAMTools SNP 118725 118725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 119978 119978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1880 SAMTools SNP 120517 120517 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1880 SAMTools SNP 120771 120771 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1880 SAMTools SNP 120819 120819 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1880 SAMTools SNP 120897 120897 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C3%3BMQ%3D47%3BFQ%3D38%3BPV4%3D0.2%2C1.1e-10%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C147:68 scaffold1880 SAMTools SNP 123741 123741 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 123891 123891 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 123934 123934 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 124325 124325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 124326 124326 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1880 SAMTools SNP 124385 124385 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1880 SAMTools SNP 125436 125436 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1880 SAMTools SNP 125687 125687 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1880 SAMTools SNP 126494 126494 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1880 SAMTools SNP 127936 127936 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 127951 127951 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1880 SAMTools SNP 128645 128645 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1880 SAMTools SNP 130805 130805 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1880 SAMTools SNP 131673 131673 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 133025 133025 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 133045 133045 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 133447 133447 113 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold1880 SAMTools SNP 133846 133846 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1880 SAMTools SNP 138129 138129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C162%2C29%2C168%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 139428 139428 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C8.3e-26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C239:47 scaffold1880 SAMTools SNP 140929 140929 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C15%2C31%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.047%2C1.9e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1880 SAMTools SNP 140999 140999 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C120%2C0:99 scaffold1880 SAMTools SNP 142093 142093 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 142225 142225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C101%2C57%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 143287 143287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C60%2C11%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 143743 143743 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C255%2C0:99 scaffold1880 SAMTools SNP 145449 145449 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold1880 SAMTools SNP 146709 146709 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.033%2C1%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1880 SAMTools SNP 147300 147300 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C3%2C42%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.18%2C1.9e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1880 SAMTools SNP 147741 147741 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C13%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.0011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C248:99 scaffold1880 SAMTools SNP 147984 147984 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1880 SAMTools SNP 148023 148023 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 148029 148029 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 148900 148900 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1880 SAMTools SNP 148927 148927 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1880 SAMTools SNP 148942 148942 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold1880 SAMTools SNP 149284 149284 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1880 SAMTools SNP 150061 150061 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1880 SAMTools SNP 151264 151264 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1880 SAMTools SNP 151324 151324 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1880 SAMTools SNP 151700 151700 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold1880 SAMTools SNP 151721 151721 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1880 SAMTools SNP 151757 151757 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1880 SAMTools SNP 152827 152827 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1880 SAMTools SNP 152842 152842 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1880 SAMTools SNP 154606 154606 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C1%2C1%2C5.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1880 SAMTools SNP 159632 159632 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1880 SAMTools SNP 161080 161080 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1880 SAMTools SNP 161424 161424 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 162008 162008 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C204:57 scaffold1880 SAMTools SNP 162466 162466 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1880 SAMTools SNP 162469 162469 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.65%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1880 SAMTools SNP 162884 162884 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C54%2C0:99 scaffold1880 SAMTools SNP 164753 164753 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C23%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1.4e-37%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 164897 164897 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C90%2C0:99 scaffold1880 SAMTools SNP 165314 165314 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C20%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C230:99 scaffold1880 SAMTools SNP 165366 165366 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1880 SAMTools SNP 165371 165371 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1880 SAMTools SNP 165397 165397 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1880 SAMTools SNP 166002 166002 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 166068 166068 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D9.1e-05%2C1.5e-22%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1880 SAMTools SNP 168744 168744 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1880 SAMTools SNP 168994 168994 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D5.89%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C32:35 scaffold1880 SAMTools SNP 169116 169116 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1.4e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C79%2C0:99 scaffold1880 SAMTools SNP 169227 169227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1880 SAMTools SNP 169237 169237 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D0.067%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold1880 SAMTools SNP 169905 169905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C57%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1880 SAMTools SNP 173891 173891 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold1880 SAMTools SNP 174269 174269 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C51%2C7%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D0.25%2C3.6e-16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C88%2C0:99 scaffold1880 SAMTools SNP 174368 174368 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 175447 175447 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1880 SAMTools SNP 175579 175579 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1880 SAMTools SNP 177003 177003 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C3%2C14%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1.2e-21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1880 SAMTools SNP 177144 177144 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1880 SAMTools SNP 182267 182267 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1880 SAMTools SNP 182330 182330 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1880 SAMTools SNP 182584 182584 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C0.092%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C227:94 scaffold1880 SAMTools SNP 182916 182916 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1880 SAMTools SNP 183183 183183 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1880 SAMTools SNP 191504 191504 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C113:30 scaffold1880 SAMTools SNP 198104 198104 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 198349 198349 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 199076 199076 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1880 SAMTools SNP 202040 202040 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C32:35 scaffold1880 SAMTools SNP 202051 202051 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C32:35 scaffold1880 SAMTools SNP 202054 202054 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold1880 SAMTools SNP 202234 202234 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold1880 SAMTools SNP 202297 202297 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold1880 SAMTools SNP 202841 202841 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1880 SAMTools SNP 202851 202851 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold1880 SAMTools SNP 203121 203121 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1880 SAMTools SNP 203161 203161 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1880 SAMTools SNP 203346 203346 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1880 SAMTools SNP 203420 203420 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1880 SAMTools SNP 203800 203800 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.44%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1880 SAMTools SNP 204285 204285 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1881 SAMTools SNP 383 383 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 3243 3243 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1881 SAMTools SNP 3728 3728 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1881 SAMTools SNP 13108 13108 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1881 SAMTools SNP 13147 13147 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1881 SAMTools SNP 17010 17010 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold1881 SAMTools SNP 17025 17025 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D47%3BFQ%3D125%3BPV4%3D0.17%2C1%2C1%2C4.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C157:99 scaffold1881 SAMTools SNP 17049 17049 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold1881 SAMTools SNP 17054 17054 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1881 SAMTools SNP 19720 19720 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1881 SAMTools SNP 19863 19863 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1881 SAMTools SNP 19892 19892 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 19894 19894 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 20950 20950 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1881 SAMTools SNP 21572 21572 58.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold1881 SAMTools SNP 21619 21619 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D16.1%3BPV4%3D0.4%2C0.007%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C112:46 scaffold1881 SAMTools SNP 25299 25299 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D32%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.037%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C97:39 scaffold1881 SAMTools SNP 25347 25347 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 25666 25666 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1881 SAMTools SNP 25687 25687 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold1881 SAMTools SNP 26222 26222 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1881 SAMTools SNP 26225 26225 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1881 SAMTools SNP 26849 26849 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 27128 27128 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 27218 27218 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 27653 27653 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold1881 SAMTools SNP 28097 28097 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1881 SAMTools SNP 28116 28116 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold1881 SAMTools SNP 28151 28151 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold1881 SAMTools SNP 29497 29497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1881 SAMTools SNP 29506 29506 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1881 SAMTools SNP 29940 29940 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C16%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.00043%2C4.2e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1881 SAMTools SNP 30327 30327 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 30352 30352 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1881 SAMTools SNP 30354 30354 56 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-52;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C191%2C166%2C255%2C0%2C254:47 scaffold1881 SAMTools SNP 30372 30372 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C127:99 scaffold1881 SAMTools SNP 30426 30426 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1881 SAMTools SNP 30855 30855 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1881 SAMTools SNP 31431 31431 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C36%2C0:69 scaffold1881 SAMTools SNP 31797 31797 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1881 SAMTools SNP 31833 31833 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.62%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1881 SAMTools SNP 32190 32190 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.091%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C234:99 scaffold1881 SAMTools SNP 32198 32198 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1881 SAMTools SNP 32937 32937 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1881 SAMTools SNP 32948 32948 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold1881 SAMTools SNP 33142 33142 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C24%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1881 SAMTools SNP 34846 34846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C10%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 35285 35285 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D23.8%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C57:54 scaffold1881 SAMTools SNP 38233 38233 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1881 SAMTools SNP 39229 39229 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.025%2C1%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1881 SAMTools SNP 43013 43013 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C8%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D4.2e-08%2C0.0033%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C238:99 scaffold1881 SAMTools SNP 43797 43797 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 43800 43800 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0024%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1881 SAMTools SNP 43834 43834 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.11%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C219:99 scaffold1881 SAMTools SNP 43886 43886 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1881 SAMTools SNP 44256 44256 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C141:99 scaffold1881 SAMTools SNP 44407 44407 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1881 SAMTools SNP 45259 45259 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 45298 45298 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1881 SAMTools SNP 45340 45340 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold1881 SAMTools SNP 45346 45346 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.025%2C0.0059%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1881 SAMTools SNP 49345 49345 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.00097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold1881 SAMTools SNP 49362 49362 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold1881 SAMTools SNP 56313 56313 67.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold1881 SAMTools SNP 56982 56982 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold1881 SAMTools SNP 60483 60483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1881 SAMTools SNP 60591 60591 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.072%2C0.028%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1881 SAMTools SNP 61432 61432 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C7%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold1881 SAMTools SNP 61444 61444 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1881 SAMTools SNP 61489 61489 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1881 SAMTools SNP 61507 61507 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.055%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 61570 61570 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C26%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 62565 62565 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1881 SAMTools SNP 63295 63295 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C232:99 scaffold1881 SAMTools SNP 63298 63298 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.23%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1881 SAMTools SNP 64423 64423 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.00026%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1881 SAMTools SNP 64519 64519 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.56%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1881 SAMTools SNP 64539 64539 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C0%2C36%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1.6e-06%2C1.4e-13%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1881 SAMTools SNP 66043 66043 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C42%2C0:81 scaffold1881 SAMTools SNP 66088 66088 51.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1881 SAMTools SNP 70208 70208 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1881 SAMTools SNP 70445 70445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1881 SAMTools SNP 70556 70556 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C12%2C41%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 70743 70743 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C35%2C44%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 70897 70897 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C8%2C24%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0083%2C1.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1881 SAMTools SNP 70983 70983 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0009%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0.025%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C16:19 scaffold1881 SAMTools SNP 71028 71028 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C161%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1881 SAMTools SNP 71271 71271 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1881 SAMTools SNP 90194 90194 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1881 SAMTools SNP 90203 90203 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1881 SAMTools SNP 90269 90269 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1881 SAMTools SNP 91519 91519 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold1881 SAMTools SNP 91587 91587 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1881 SAMTools SNP 95409 95409 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C4.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1881 SAMTools SNP 95654 95654 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1881 SAMTools SNP 95671 95671 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1881 SAMTools SNP 95698 95698 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1881 SAMTools SNP 95849 95849 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1881 SAMTools SNP 96349 96349 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1881 SAMTools SNP 96397 96397 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 119017 119017 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1881 SAMTools SNP 119033 119033 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1881 SAMTools SNP 120652 120652 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.088%2C0.42%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1881 SAMTools SNP 121654 121654 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C8.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold1881 SAMTools SNP 122082 122082 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1881 SAMTools SNP 122103 122103 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.064%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1881 SAMTools SNP 122127 122127 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C25%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1881 SAMTools SNP 122136 122136 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1881 SAMTools SNP 122142 122142 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1881 SAMTools SNP 122435 122435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.38%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold1881 SAMTools SNP 122519 122519 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C3%2C27%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.017%2C1.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold1881 SAMTools SNP 122531 122531 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C35%2C4%2C30%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.039%2C1.6e-49%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1881 SAMTools SNP 122714 122714 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 125676 125676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 125694 125694 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.046%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1881 SAMTools SNP 126384 126384 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C29%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.51%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1881 SAMTools SNP 126399 126399 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C2%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1881 SAMTools SNP 126420 126420 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1881 SAMTools SNP 126495 126495 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C2%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1881 SAMTools SNP 126516 126516 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-07%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 126832 126832 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1881 SAMTools SNP 127195 127195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1881 SAMTools SNP 127452 127452 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1881 SAMTools SNP 128499 128499 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1881 SAMTools SNP 128514 128514 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1881 SAMTools SNP 128521 128521 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1881 SAMTools SNP 128863 128863 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C241:99 scaffold1881 SAMTools SNP 128949 128949 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 129244 129244 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C66%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1881 SAMTools SNP 129313 129313 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 129722 129722 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C43%2C0%2C11%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0056%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1881 SAMTools SNP 129758 129758 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C47%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold1881 SAMTools SNP 130140 130140 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C31%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C0.25%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C46%2C0:89 scaffold1881 SAMTools SNP 130172 130172 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1881 SAMTools SNP 131098 131098 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1881 SAMTools SNP 131197 131197 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1881 SAMTools SNP 131198 131198 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1881 SAMTools SNP 131950 131950 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1881 SAMTools SNP 131953 131953 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1881 SAMTools SNP 132151 132151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C9%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 132973 132973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C0%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.18%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 132977 132977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C0%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 133009 133009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C5%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.49%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1881 SAMTools SNP 133317 133317 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1882 SAMTools SNP 35207 35207 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1882 SAMTools SNP 37693 37693 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 37714 37714 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 37742 37742 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 44043 44043 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1882 SAMTools SNP 64276 64276 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 64324 64324 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C39%2C0:75 scaffold1882 SAMTools SNP 64519 64519 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C51%2C0:99 scaffold1882 SAMTools SNP 84895 84895 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 84913 84913 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C28:31 scaffold1882 SAMTools SNP 86607 86607 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C1%2C95%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C8.7e-50%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1882 SAMTools SNP 89832 89832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C58%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold1882 SAMTools SNP 89840 89840 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C226:99 scaffold1882 SAMTools SNP 89855 89855 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 102833 102833 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold1882 SAMTools SNP 114952 114952 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1882 SAMTools SNP 114989 114989 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1882 SAMTools SNP 119529 119529 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.036%2C0.043%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1882 SAMTools SNP 119580 119580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1882 SAMTools SNP 121797 121797 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1882 SAMTools SNP 122550 122550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1882 SAMTools SNP 122586 122586 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1882 SAMTools SNP 123200 123200 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1882 SAMTools SNP 123242 123242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1882 SAMTools SNP 124167 124167 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1882 SAMTools SNP 125529 125529 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1882 SAMTools SNP 126048 126048 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C125:36 scaffold1882 SAMTools SNP 126073 126073 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1882 SAMTools SNP 126335 126335 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1882 SAMTools SNP 126386 126386 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C13%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.53%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold1882 SAMTools SNP 126755 126755 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C16%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold1882 SAMTools SNP 128115 128115 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1882 SAMTools SNP 128231 128231 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.42%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 128557 128557 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 130549 130549 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C10%3BMQ%3D47%3BFQ%3D163%3BPV4%3D0.41%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C190:99 scaffold1882 SAMTools SNP 133445 133445 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 133504 133504 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1882 SAMTools SNP 135144 135144 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1882 SAMTools SNP 135384 135384 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1882 SAMTools SNP 135436 135436 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1882 SAMTools SNP 135513 135513 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1882 SAMTools SNP 135915 135915 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C11%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.35%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C247:99 scaffold1882 SAMTools SNP 135933 135933 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1882 SAMTools SNP 136014 136014 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C80:60 scaffold1882 SAMTools SNP 136200 136200 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 136213 136213 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 137786 137786 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1882 SAMTools SNP 137807 137807 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C9%2C0:16 scaffold1882 SAMTools SNP 137907 137907 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1882 SAMTools SNP 145562 145562 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 145846 145846 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold1882 SAMTools SNP 145852 145852 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1882 SAMTools SNP 146314 146314 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1882 SAMTools SNP 163878 163878 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C1%2C99%2C1%3BMQ%3D32%3BFQ%3D175%3BPV4%3D1%2C1%2C0.0011%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C244:99 scaffold1882 SAMTools SNP 163900 163900 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C117%3BMQ%3D35%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 164557 164557 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C78%2C64%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.13%2C4.8e-26%2C1%2C1.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 164617 164617 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D890%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C737%2C145%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 167812 167812 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1882 SAMTools SNP 170826 170826 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D724%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C707%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 170878 170878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C292%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 172549 172549 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1882 SAMTools SNP 172551 172551 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1882 SAMTools SNP 172561 172561 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1882 SAMTools SNP 176772 176772 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 177085 177085 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1882 SAMTools SNP 177172 177172 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1882 SAMTools SNP 178150 178150 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1882 SAMTools SNP 178171 178171 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1882 SAMTools SNP 178174 178174 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1882 SAMTools SNP 180108 180108 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1882 SAMTools SNP 180111 180111 196 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C47%2C20%2C212%2C0%2C209:51 scaffold1882 SAMTools SNP 182194 182194 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1882 SAMTools SNP 182197 182197 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1882 SAMTools SNP 182269 182269 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1882 SAMTools SNP 182284 182284 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold1882 SAMTools SNP 183320 183320 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 183347 183347 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 183479 183479 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1882 SAMTools SNP 183485 183485 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1882 SAMTools SNP 183814 183814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1882 SAMTools SNP 183847 183847 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1882 SAMTools SNP 183862 183862 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1882 SAMTools SNP 184022 184022 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.077%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 184046 184046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C14%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1882 SAMTools SNP 184251 184251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C5.9e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 184428 184428 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold1882 SAMTools SNP 184500 184500 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C44%2C16%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C8.4e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 184659 184659 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold1882 SAMTools SNP 184719 184719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1882 SAMTools SNP 184779 184779 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C27%2C0:51 scaffold1882 SAMTools SNP 184830 184830 86.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.38%2C7.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C13%2C0:23 scaffold1882 SAMTools SNP 185206 185206 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1882 SAMTools SNP 185553 185553 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C202:72 scaffold1882 SAMTools SNP 186286 186286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.38%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold1882 SAMTools SNP 186301 186301 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C7%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1882 SAMTools SNP 186400 186400 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D5.5e-07%2C3e-37%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold1882 SAMTools SNP 186457 186457 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C2%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1882 SAMTools SNP 186856 186856 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1882 SAMTools SNP 187284 187284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1882 SAMTools SNP 187890 187890 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 187929 187929 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 188141 188141 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C24%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold1882 SAMTools SNP 188657 188657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C100%2C8%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 189659 189659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 190220 190220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1882 SAMTools SNP 191234 191234 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold1882 SAMTools SNP 230588 230588 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold1882 SAMTools SNP 230707 230707 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold1882 SAMTools SNP 230788 230788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1882 SAMTools SNP 231978 231978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1882 SAMTools SNP 259695 259695 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C210:78 scaffold1882 SAMTools SNP 260291 260291 87.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold1883 SAMTools SNP 52110 52110 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C30%2C0:55 scaffold1883 SAMTools SNP 55703 55703 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D73%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.59%2C9.2e-07%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1883 SAMTools SNP 55836 55836 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.021%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 60347 60347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C33%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 60380 60380 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 61113 61113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1883 SAMTools SNP 61114 61114 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1883 SAMTools SNP 63778 63778 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C20%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 63787 63787 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C28%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 65518 65518 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C0%2C18%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0016%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1883 SAMTools SNP 65554 65554 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1883 SAMTools SNP 65665 65665 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C6%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.21%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1883 SAMTools SNP 66376 66376 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C7%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1883 SAMTools SNP 66427 66427 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C3%2C75%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 67758 67758 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C68%2C7%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C9.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 69134 69134 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1883 SAMTools SNP 69194 69194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1883 SAMTools SNP 69197 69197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1883 SAMTools SNP 70466 70466 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C34%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1883 SAMTools SNP 70508 70508 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C21%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D0.42%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold1883 SAMTools SNP 70520 70520 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C17%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1883 SAMTools SNP 70969 70969 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C24%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 70987 70987 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1883 SAMTools SNP 71983 71983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 71995 71995 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1883 SAMTools SNP 72654 72654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1883 SAMTools SNP 73340 73340 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C9%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.021%2C2.8e-05%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1883 SAMTools SNP 73568 73568 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 73569 73569 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 74593 74593 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C0.02%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1883 SAMTools SNP 75893 75893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1883 SAMTools SNP 76121 76121 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C65:68 scaffold1883 SAMTools SNP 76122 76122 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.29%2C0.1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C160:61 scaffold1883 SAMTools SNP 76157 76157 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1883 SAMTools SNP 77091 77091 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1883 SAMTools SNP 77133 77133 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1883 SAMTools SNP 79604 79604 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1883 SAMTools SNP 83211 83211 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1883 SAMTools SNP 85165 85165 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1883 SAMTools SNP 91991 91991 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C39%2C0:75 scaffold1883 SAMTools SNP 92192 92192 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.48%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold1883 SAMTools SNP 92533 92533 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold1883 SAMTools SNP 92661 92661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1883 SAMTools SNP 93157 93157 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.49%2C0.02%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1883 SAMTools SNP 93158 93158 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.022%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C242:34 scaffold1883 SAMTools SNP 150516 150516 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1883 SAMTools SNP 151732 151732 28.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold1883 SAMTools SNP 152797 152797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C209%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.00019%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1883 SAMTools SNP 152879 152879 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C75%2C174%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C4.3e-151%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 154074 154074 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D797%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C33%2C0:63 scaffold1883 SAMTools SNP 154532 154532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D696%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C246%2C43%2C299%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 154868 154868 113 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C11%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.068%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C112%2C203%2C99%2C0%2C192:94 scaffold1883 SAMTools SNP 154869 154869 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1883 SAMTools SNP 155357 155357 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D470%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1883 SAMTools SNP 155358 155358 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1883 SAMTools SNP 155492 155492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1286%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C762%2C489%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1883 SAMTools SNP 155723 155723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C16%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-08%2C4.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 157256 157256 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold1883 SAMTools SNP 161961 161961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C30%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1883 SAMTools SNP 162377 162377 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1883 SAMTools SNP 166857 166857 64.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold1884 SAMTools SNP 3321 3321 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1884 SAMTools SNP 4533 4533 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C7%2C13%3BMQ%3D49%3BFQ%3D84%3BPV4%3D0.24%2C4.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1884 SAMTools SNP 7303 7303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C15%2C27%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 7860 7860 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 7875 7875 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 11196 11196 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C10%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.75%2C0.32%2C0.066%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 13308 13308 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 13383 13383 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1884 SAMTools SNP 15607 15607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C8%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 16163 16163 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D43%3BFQ%3D5.23%3BPV4%3D0.33%2C1%2C0.21%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C31:34 scaffold1884 SAMTools SNP 33478 33478 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C188:99 scaffold1884 SAMTools SNP 33897 33897 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C33%2C0:63 scaffold1884 SAMTools SNP 33934 33934 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold1884 SAMTools SNP 34088 34088 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1884 SAMTools SNP 34960 34960 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C2%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1884 SAMTools SNP 38650 38650 145 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C24%2C0:45 scaffold1884 SAMTools SNP 38839 38839 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1884 SAMTools SNP 43404 43404 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.098%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C248:53 scaffold1884 SAMTools SNP 43416 43416 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.00043%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C208:39 scaffold1884 SAMTools SNP 43431 43431 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold1884 SAMTools SNP 43858 43858 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.036%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1884 SAMTools SNP 44765 44765 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.0094%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C174:99 scaffold1884 SAMTools SNP 46546 46546 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1884 SAMTools SNP 51349 51349 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1884 SAMTools SNP 51355 51355 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1884 SAMTools SNP 52278 52278 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1884 SAMTools SNP 55235 55235 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 55257 55257 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 57513 57513 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1884 SAMTools SNP 58470 58470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 58708 58708 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 61334 61334 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1884 SAMTools SNP 61549 61549 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0034%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1884 SAMTools SNP 61551 61551 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1884 SAMTools SNP 66149 66149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1884 SAMTools SNP 66352 66352 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1884 SAMTools SNP 66702 66702 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.63%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold1884 SAMTools SNP 68088 68088 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C183:99 scaffold1884 SAMTools SNP 68104 68104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1884 SAMTools SNP 68133 68133 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C186:72 scaffold1884 SAMTools SNP 70713 70713 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1884 SAMTools SNP 70717 70717 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1884 SAMTools SNP 85807 85807 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1884 SAMTools SNP 95822 95822 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C13%3BMQ%3D46%3BFQ%3D56%3BPV4%3D0.13%2C4.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C198:86 scaffold1884 SAMTools SNP 109271 109271 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1884 SAMTools SNP 109564 109564 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D1%2C3.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C32:28 scaffold1884 SAMTools SNP 115005 115005 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C122%2C59%2C65%3BMQ%3D21%3BFQ%3D24%3BPV4%3D0.74%2C1%2C0.00026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1884 SAMTools SNP 117099 117099 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C6%3BMQ%3D46%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1884 SAMTools SNP 117568 117568 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D49%3BFQ%3D47%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C234:77 scaffold1884 SAMTools SNP 117592 117592 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D48%3BFQ%3D55%3BPV4%3D1%2C0.015%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold1884 SAMTools SNP 120083 120083 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C27%2C0:51 scaffold1884 SAMTools SNP 120284 120284 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C54%2C0:99 scaffold1884 SAMTools SNP 125956 125956 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1884 SAMTools SNP 128564 128564 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1884 SAMTools SNP 133560 133560 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1884 SAMTools SNP 133743 133743 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1884 SAMTools SNP 133998 133998 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1884 SAMTools SNP 134612 134612 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 134616 134616 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 134786 134786 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1884 SAMTools SNP 135110 135110 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 137357 137357 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold1884 SAMTools SNP 140718 140718 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1884 SAMTools SNP 147603 147603 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C23%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D4.2e-08%2C1.4e-39%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1884 SAMTools SNP 147907 147907 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C45%2C0:87 scaffold1884 SAMTools SNP 149693 149693 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold1884 SAMTools SNP 150257 150257 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.019%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C182:54 scaffold1884 SAMTools SNP 150266 150266 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C6.7e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C73:76 scaffold1884 SAMTools SNP 150365 150365 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.24%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C231:99 scaffold1884 SAMTools SNP 150849 150849 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1884 SAMTools SNP 150924 150924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C10%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1884 SAMTools SNP 151202 151202 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1884 SAMTools SNP 151772 151772 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold1884 SAMTools SNP 151787 151787 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C243:99 scaffold1884 SAMTools SNP 151843 151843 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.14%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C143:40 scaffold1884 SAMTools SNP 151902 151902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1884 SAMTools SNP 152261 152261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1884 SAMTools SNP 152336 152336 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C22%2C17%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.21%2C0.36%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1884 SAMTools SNP 154769 154769 37.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1884 SAMTools SNP 175759 175759 11.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold1884 SAMTools SNP 175837 175837 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C201:50 scaffold1884 SAMTools SNP 176649 176649 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1884 SAMTools SNP 176654 176654 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 176657 176657 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 176962 176962 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C15%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.27%2C1.2e-47%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1884 SAMTools SNP 178402 178402 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1884 SAMTools SNP 178552 178552 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 179869 179869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1884 SAMTools SNP 185273 185273 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold1884 SAMTools SNP 185279 185279 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C212:99 scaffold1884 SAMTools SNP 185297 185297 160 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C39%2C0%2C179%2C13%2C176:75 scaffold1884 SAMTools SNP 185354 185354 24.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D3%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1.8e-23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C12:15 scaffold1884 SAMTools SNP 185528 185528 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 186510 186510 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.049%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1884 SAMTools SNP 186521 186521 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1884 SAMTools SNP 187329 187329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 187337 187337 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C3%2C19%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1884 SAMTools SNP 188181 188181 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.47%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C173:99 scaffold1884 SAMTools SNP 188182 188182 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1884 SAMTools SNP 188974 188974 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C175%2C0:99 scaffold1884 SAMTools SNP 189428 189428 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C31%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 189446 189446 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C46%2C17%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0011%2C8.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1884 SAMTools SNP 189455 189455 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C48%2C28%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1.8e-05%2C2.7e-17%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1884 SAMTools SNP 189620 189620 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1884 SAMTools SNP 189879 189879 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C45%2C0:87 scaffold1884 SAMTools SNP 190308 190308 38.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold1884 SAMTools SNP 196640 196640 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1884 SAMTools SNP 198013 198013 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1884 SAMTools SNP 198073 198073 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.52%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold1884 SAMTools SNP 198376 198376 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C15%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1884 SAMTools SNP 199944 199944 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0168%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C219:37 scaffold1884 SAMTools SNP 199977 199977 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C141:61 scaffold1884 SAMTools SNP 200869 200869 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C15%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.6%2C2.4e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1884 SAMTools SNP 201602 201602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C67%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1884 SAMTools SNP 202685 202685 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C22%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1884 SAMTools SNP 203684 203684 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C36%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1884 SAMTools SNP 206055 206055 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C9%3BMQ%3D49%3BFQ%3D-158%3BPV4%3D1%2C0.26%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold1884 SAMTools SNP 207197 207197 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1884 SAMTools SNP 209046 209046 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 209732 209732 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1884 SAMTools SNP 209859 209859 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C5.6e-05%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C220:36 scaffold1884 SAMTools SNP 209870 209870 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.57%2C0.33%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C176:99 scaffold1884 SAMTools SNP 210943 210943 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold1884 SAMTools SNP 213428 213428 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1884 SAMTools SNP 214581 214581 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1884 SAMTools SNP 215523 215523 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0005%2C3e-08%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C145:77 scaffold1884 SAMTools SNP 215968 215968 65.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold1884 SAMTools SNP 217887 217887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1884 SAMTools SNP 217920 217920 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C69%2C0:99 scaffold1884 SAMTools SNP 218024 218024 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1884 SAMTools SNP 218039 218039 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1884 SAMTools SNP 240060 240060 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1884 SAMTools SNP 247222 247222 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 247391 247391 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 272441 272441 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1884 SAMTools SNP 272822 272822 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold1884 SAMTools SNP 273008 273008 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C7%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.034%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1884 SAMTools SNP 273012 273012 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.023%2C2e-16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C225:99 scaffold1884 SAMTools SNP 285273 285273 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C71%2C1%2C10%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.68%2C0.065%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1884 SAMTools SNP 286090 286090 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold1884 SAMTools SNP 286924 286924 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1884 SAMTools SNP 286930 286930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1884 SAMTools SNP 286959 286959 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1884 SAMTools SNP 286972 286972 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C2%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.03%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold1884 SAMTools SNP 288420 288420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D277%2C21%2C208%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 288513 288513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D755%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D179%2C201%2C50%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 288516 288516 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D688%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C217%2C61%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 289911 289911 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D730%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C627%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1884 SAMTools SNP 290465 290465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C55%2C22%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 291709 291709 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1884 SAMTools SNP 292491 292491 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C61%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 292548 292548 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1884 SAMTools SNP 292554 292554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1884 SAMTools SNP 293145 293145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C6%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1884 SAMTools SNP 293846 293846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C57%2C27%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.0049%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 293852 293852 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1884 SAMTools SNP 294318 294318 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold1884 SAMTools SNP 295547 295547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C49%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1884 SAMTools SNP 295592 295592 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C35%2C10%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.25%2C1%2C1%2C8.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1884 SAMTools SNP 295691 295691 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C106%2C20%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1884 SAMTools SNP 296267 296267 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1884 SAMTools SNP 296276 296276 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1884 SAMTools SNP 296327 296327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1884 SAMTools SNP 296331 296331 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.46%2C0.33%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1885 SAMTools SNP 141 141 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 301 301 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 2959 2959 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D25%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C60%2C0:99 scaffold1885 SAMTools SNP 3428 3428 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C13%3BMQ%3D44%3BFQ%3D44%3BPV4%3D0.66%2C4.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C227:74 scaffold1885 SAMTools SNP 3452 3452 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C18%3BMQ%3D39%3BFQ%3D5.47%3BPV4%3D1%2C5.5e-31%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C205:30 scaffold1885 SAMTools SNP 3569 3569 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.00033%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold1885 SAMTools SNP 3628 3628 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D36.2%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C71:66 scaffold1885 SAMTools SNP 4171 4171 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.7e-19%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C201:30 scaffold1885 SAMTools SNP 65474 65474 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 65855 65855 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 65972 65972 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1885 SAMTools SNP 65973 65973 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C111:36 scaffold1885 SAMTools SNP 66315 66315 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C39%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C0.23%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1885 SAMTools SNP 66607 66607 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C10%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1885 SAMTools SNP 67442 67442 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C46%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold1885 SAMTools SNP 67512 67512 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C7%2C26%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-07%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1885 SAMTools SNP 75802 75802 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1885 SAMTools SNP 75952 75952 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C12%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C144%2C0:99 scaffold1885 SAMTools SNP 76048 76048 26.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1885 SAMTools SNP 76990 76990 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold1885 SAMTools SNP 77808 77808 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold1885 SAMTools SNP 80124 80124 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.18%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold1885 SAMTools SNP 83155 83155 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1885 SAMTools SNP 83188 83188 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C73:76 scaffold1885 SAMTools SNP 83242 83242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1885 SAMTools SNP 83302 83302 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold1885 SAMTools SNP 84144 84144 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1885 SAMTools SNP 84973 84973 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1885 SAMTools SNP 84991 84991 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1885 SAMTools SNP 85033 85033 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1885 SAMTools SNP 181718 181718 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold1885 SAMTools SNP 194910 194910 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.02%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold1885 SAMTools SNP 200099 200099 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1885 SAMTools SNP 223897 223897 31.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold1885 SAMTools SNP 240390 240390 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.4%2C3.3e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C110:40 scaffold1885 SAMTools SNP 240533 240533 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1885 SAMTools SNP 241968 241968 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1885 SAMTools SNP 274436 274436 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 274439 274439 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1885 SAMTools SNP 275191 275191 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1885 SAMTools SNP 276333 276333 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1885 SAMTools SNP 276334 276334 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1886 SAMTools SNP 586 586 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1886 SAMTools SNP 1150 1150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 1745 1745 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 1759 1759 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 11642 11642 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold1886 SAMTools SNP 19152 19152 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.096%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1886 SAMTools SNP 20429 20429 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C34%2C4%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.42%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold1886 SAMTools SNP 20438 20438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C14%2C23%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.42%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1886 SAMTools SNP 21425 21425 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.54%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1886 SAMTools SNP 21437 21437 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold1886 SAMTools SNP 21465 21465 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1886 SAMTools SNP 22176 22176 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1886 SAMTools SNP 22401 22401 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 22821 22821 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1886 SAMTools SNP 24531 24531 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1886 SAMTools SNP 24537 24537 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1886 SAMTools SNP 24555 24555 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 24570 24570 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 24588 24588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 40728 40728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 40734 40734 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 41296 41296 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 42700 42700 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1886 SAMTools SNP 43414 43414 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 43419 43419 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 44296 44296 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1886 SAMTools SNP 45823 45823 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D5.38%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C35:32 scaffold1886 SAMTools SNP 52292 52292 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 55205 55205 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1886 SAMTools SNP 71870 71870 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1886 SAMTools SNP 72261 72261 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1886 SAMTools SNP 74943 74943 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1886 SAMTools SNP 103564 103564 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C113:41 scaffold1886 SAMTools SNP 103577 103577 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.4%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C77:47 scaffold1886 SAMTools SNP 103801 103801 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 103997 103997 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 105048 105048 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold1886 SAMTools SNP 112147 112147 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1886 SAMTools SNP 145331 145331 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1886 SAMTools SNP 230826 230826 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 237289 237289 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1886 SAMTools SNP 238544 238544 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1886 SAMTools SNP 238550 238550 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 238972 238972 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1886 SAMTools SNP 240969 240969 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1886 SAMTools SNP 241690 241690 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.042%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1886 SAMTools SNP 241723 241723 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1886 SAMTools SNP 242511 242511 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 258801 258801 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1886 SAMTools SNP 261248 261248 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 261659 261659 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.51%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C138:99 scaffold1886 SAMTools SNP 261917 261917 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1886 SAMTools SNP 262205 262205 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1886 SAMTools SNP 262289 262289 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1886 SAMTools SNP 263130 263130 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C144:36 scaffold1886 SAMTools SNP 265061 265061 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1886 SAMTools SNP 265286 265286 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C8.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C124:99 scaffold1886 SAMTools SNP 274789 274789 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1886 SAMTools SNP 276983 276983 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1886 SAMTools SNP 277153 277153 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1886 SAMTools SNP 279821 279821 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1886 SAMTools SNP 279896 279896 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1886 SAMTools SNP 282926 282926 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C27%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1886 SAMTools SNP 282943 282943 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1886 SAMTools SNP 287507 287507 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1886 SAMTools SNP 304009 304009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C31%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1886 SAMTools SNP 305787 305787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C338%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1886 SAMTools SNP 306382 306382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1886 SAMTools SNP 306420 306420 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1886 SAMTools SNP 307505 307505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1886 SAMTools SNP 307534 307534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1886 SAMTools SNP 307577 307577 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C9%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D4.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold1886 SAMTools SNP 308055 308055 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.61%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold1886 SAMTools SNP 309204 309204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1886 SAMTools SNP 312350 312350 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1886 SAMTools SNP 313083 313083 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.57%2C0.013%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C218:99 scaffold1886 SAMTools SNP 313333 313333 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1886 SAMTools SNP 313354 313354 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1886 SAMTools SNP 313359 313359 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1886 SAMTools SNP 313954 313954 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1886 SAMTools SNP 314110 314110 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1886 SAMTools SNP 314621 314621 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1886 SAMTools SNP 314782 314782 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1886 SAMTools SNP 315140 315140 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold1886 SAMTools SNP 315299 315299 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C39%2C0:74 scaffold1886 SAMTools SNP 315503 315503 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1886 SAMTools SNP 315548 315548 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C12%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1886 SAMTools SNP 316807 316807 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1886 SAMTools SNP 317000 317000 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C35:38 scaffold1886 SAMTools SNP 317551 317551 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold1886 SAMTools SNP 317583 317583 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1886 SAMTools SNP 318124 318124 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1886 SAMTools SNP 320543 320543 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1886 SAMTools SNP 320810 320810 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1886 SAMTools SNP 320812 320812 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold1886 SAMTools SNP 320823 320823 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C223:99 scaffold1886 SAMTools SNP 321593 321593 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C60%2C7%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D9.2e-07%2C1.6e-34%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1886 SAMTools SNP 323155 323155 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C57%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 323396 323396 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1886 SAMTools SNP 323927 323927 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.11%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 323996 323996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1886 SAMTools SNP 325830 325830 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.18%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1886 SAMTools SNP 325849 325849 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1886 SAMTools SNP 327474 327474 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C8%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1886 SAMTools SNP 327513 327513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C19%2C61%2C13%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.56%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 327746 327746 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C17%2C108%2C19%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.72%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 327785 327785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C44%2C58%2C38%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.21%2C2.1e-14%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 327913 327913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C155%2C11%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 328782 328782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C172%2C15%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1886 SAMTools SNP 329200 329200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C58%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1886 SAMTools SNP 329203 329203 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C46%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.024%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold1886 SAMTools SNP 331295 331295 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1886 SAMTools SNP 338405 338405 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1886 SAMTools SNP 338432 338432 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1886 SAMTools SNP 338672 338672 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D45%3BFQ%3D45%3BPV4%3D0.55%2C0.0034%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C213:75 scaffold1887 SAMTools SNP 1764 1764 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1887 SAMTools SNP 1780 1780 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1887 SAMTools SNP 1846 1846 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1887 SAMTools SNP 1851 1851 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1887 SAMTools SNP 20705 20705 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D9.2e-05%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1887 SAMTools SNP 21086 21086 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1887 SAMTools SNP 27737 27737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1887 SAMTools SNP 27761 27761 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1887 SAMTools SNP 30821 30821 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold1887 SAMTools SNP 32289 32289 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold1887 SAMTools SNP 32978 32978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1887 SAMTools SNP 33962 33962 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C255%2C0:99 scaffold1887 SAMTools SNP 34166 34166 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1887 SAMTools SNP 34512 34512 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C21%2C0:39 scaffold1887 SAMTools SNP 34571 34571 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.64%2C1.9e-21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1887 SAMTools SNP 34583 34583 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.64%2C6.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1887 SAMTools SNP 34709 34709 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C72%2C0:99 scaffold1887 SAMTools SNP 37905 37905 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C33%2C24%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1887 SAMTools SNP 38602 38602 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C16%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1887 SAMTools SNP 39567 39567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C26%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1887 SAMTools SNP 39582 39582 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C46%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold1887 SAMTools SNP 41649 41649 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1887 SAMTools SNP 42981 42981 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1887 SAMTools SNP 55138 55138 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.01%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C30:28 scaffold1887 SAMTools SNP 55218 55218 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.5e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C153:65 scaffold1887 SAMTools SNP 55533 55533 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C14%3BMQ%3D50%3BFQ%3D-136%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C109%2C0:99 scaffold1887 SAMTools SNP 55632 55632 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold1887 SAMTools SNP 55641 55641 23.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold1887 SAMTools SNP 55851 55851 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C15%2C14%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.32%2C1.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1887 SAMTools SNP 55956 55956 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1887 SAMTools SNP 57005 57005 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold1887 SAMTools SNP 57325 57325 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.5e-07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C151:42 scaffold1887 SAMTools SNP 66605 66605 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.061%2C0.096%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C217:69 scaffold1887 SAMTools SNP 68444 68444 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.075%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold1887 SAMTools SNP 68453 68453 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.025%2C1%2C1.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1887 SAMTools SNP 73974 73974 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C174:99 scaffold1887 SAMTools SNP 100548 100548 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1888 SAMTools SNP 1332 1332 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 1333 1333 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 6608 6608 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold1888 SAMTools SNP 46558 46558 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C42%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold1888 SAMTools SNP 47689 47689 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C232:99 scaffold1888 SAMTools SNP 50514 50514 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1888 SAMTools SNP 50538 50538 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.015%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold1888 SAMTools SNP 50553 50553 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.031%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold1888 SAMTools SNP 50763 50763 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1888 SAMTools SNP 50787 50787 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 54113 54113 222 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0%2C237%2C7%2C234:99 scaffold1888 SAMTools SNP 54142 54142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold1888 SAMTools SNP 54631 54631 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C3%2C199%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1888 SAMTools SNP 55924 55924 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C67%2C10%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1888 SAMTools SNP 56002 56002 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 56030 56030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 56532 56532 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C187%2C84%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 57868 57868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C178%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 57891 57891 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C219:62 scaffold1888 SAMTools SNP 60555 60555 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1888 SAMTools SNP 65646 65646 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1888 SAMTools SNP 67076 67076 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 67154 67154 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1888 SAMTools SNP 67732 67732 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1888 SAMTools SNP 67897 67897 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold1888 SAMTools SNP 67915 67915 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C136:77 scaffold1888 SAMTools SNP 68553 68553 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 68559 68559 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 69402 69402 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D19%3BFQ%3D-34%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C7%2C0:11 scaffold1888 SAMTools SNP 70647 70647 9.93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold1888 SAMTools SNP 71552 71552 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1888 SAMTools SNP 71917 71917 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 75025 75025 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 86057 86057 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold1888 SAMTools SNP 90205 90205 51.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1888 SAMTools SNP 90850 90850 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold1888 SAMTools SNP 90928 90928 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.48%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1888 SAMTools SNP 91166 91166 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0114%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1888 SAMTools SNP 91495 91495 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1888 SAMTools SNP 100964 100964 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1888 SAMTools SNP 114584 114584 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1888 SAMTools SNP 115811 115811 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1888 SAMTools SNP 115932 115932 5.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold1888 SAMTools SNP 116600 116600 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1888 SAMTools SNP 118309 118309 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1888 SAMTools SNP 118640 118640 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1888 SAMTools SNP 119320 119320 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C118:99 scaffold1888 SAMTools SNP 119344 119344 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C91:94 scaffold1888 SAMTools SNP 125370 125370 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold1888 SAMTools SNP 125391 125391 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1888 SAMTools SNP 127437 127437 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 127511 127511 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1888 SAMTools SNP 127865 127865 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1888 SAMTools SNP 129134 129134 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1888 SAMTools SNP 129460 129460 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 129517 129517 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 131008 131008 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 133152 133152 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1888 SAMTools SNP 133229 133229 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 133626 133626 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 133710 133710 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 134099 134099 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 136043 136043 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1888 SAMTools SNP 136383 136383 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 138417 138417 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold1888 SAMTools SNP 145864 145864 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1888 SAMTools SNP 145901 145901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 147017 147017 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C214:99 scaffold1888 SAMTools SNP 147050 147050 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C41%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1888 SAMTools SNP 178010 178010 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 178597 178597 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1888 SAMTools SNP 178621 178621 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1888 SAMTools SNP 178656 178656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1888 SAMTools SNP 178658 178658 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1888 SAMTools SNP 202111 202111 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 222653 222653 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold1888 SAMTools SNP 222663 222663 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold1888 SAMTools SNP 222969 222969 45.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold1888 SAMTools SNP 237752 237752 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 237778 237778 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 244793 244793 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 249079 249079 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 249323 249323 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C10%2C22%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.14%2C5.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1888 SAMTools SNP 249366 249366 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold1888 SAMTools SNP 249373 249373 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.045%2C2.7e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1888 SAMTools SNP 250102 250102 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 250306 250306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1888 SAMTools SNP 266820 266820 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C138%2C0:99 scaffold1888 SAMTools SNP 266892 266892 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 266940 266940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1888 SAMTools SNP 269897 269897 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D44%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C72%2C0:99 scaffold1888 SAMTools SNP 269936 269936 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D27%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C42%2C0:81 scaffold1888 SAMTools SNP 270910 270910 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 270946 270946 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 271018 271018 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 271036 271036 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1888 SAMTools SNP 271732 271732 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C43:46 scaffold1888 SAMTools SNP 276508 276508 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1888 SAMTools SNP 276516 276516 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1888 SAMTools SNP 282667 282667 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1888 SAMTools SNP 282669 282669 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1888 SAMTools SNP 283016 283016 13.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C18%2C0:27 scaffold1888 SAMTools SNP 283043 283043 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold1888 SAMTools SNP 283088 283088 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.15%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C216:99 scaffold1888 SAMTools SNP 284080 284080 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C192%2C162:57 scaffold1888 SAMTools SNP 284086 284086 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C0.14%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1888 SAMTools SNP 284101 284101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1888 SAMTools SNP 285454 285454 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1888 SAMTools SNP 285469 285469 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.17%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C156:99 scaffold1888 SAMTools SNP 285508 285508 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold1888 SAMTools SNP 286474 286474 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1888 SAMTools SNP 286501 286501 177 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C32%2C203%2C0%2C200:27 scaffold1888 SAMTools SNP 286690 286690 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1888 SAMTools SNP 286764 286764 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D37%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D4.7e-06%2C0.00033%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1888 SAMTools SNP 286813 286813 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C24%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1888 SAMTools SNP 287719 287719 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1888 SAMTools SNP 288380 288380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1888 SAMTools SNP 289246 289246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1888 SAMTools SNP 290663 290663 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C78%2C0:99 scaffold1888 SAMTools SNP 308800 308800 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1888 SAMTools SNP 308827 308827 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1888 SAMTools SNP 319188 319188 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C21%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold1888 SAMTools SNP 319548 319548 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1888 SAMTools SNP 319632 319632 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C84%2C0:99 scaffold1888 SAMTools SNP 324912 324912 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1888 SAMTools SNP 324960 324960 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1888 SAMTools SNP 325757 325757 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1888 SAMTools SNP 325850 325850 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1888 SAMTools SNP 325865 325865 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1888 SAMTools SNP 326859 326859 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C42%2C0:81 scaffold1888 SAMTools SNP 327763 327763 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.39%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1888 SAMTools SNP 328003 328003 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C66:69 scaffold1888 SAMTools SNP 328763 328763 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1888 SAMTools SNP 341888 341888 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 55158 55158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 55605 55605 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1889 SAMTools SNP 57151 57151 17.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1889 SAMTools SNP 120593 120593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1889 SAMTools SNP 127073 127073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1889 SAMTools SNP 132084 132084 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C156:63 scaffold1889 SAMTools SNP 135412 135412 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C23%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 137003 137003 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1889 SAMTools SNP 137168 137168 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1889 SAMTools SNP 137528 137528 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C128:46 scaffold1889 SAMTools SNP 138685 138685 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold1889 SAMTools SNP 138704 138704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 139482 139482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1889 SAMTools SNP 139487 139487 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.38%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold1889 SAMTools SNP 139844 139844 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C141:99 scaffold1889 SAMTools SNP 139871 139871 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1889 SAMTools SNP 141181 141181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.015%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1889 SAMTools SNP 141256 141256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1889 SAMTools SNP 141753 141753 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C252:99 scaffold1889 SAMTools SNP 142191 142191 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1889 SAMTools SNP 142479 142479 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold1889 SAMTools SNP 142500 142500 55.8 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold1889 SAMTools SNP 142518 142518 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold1889 SAMTools SNP 143012 143012 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C1%2C19%3BMQ%3D50%3BFQ%3D179%3BPV4%3D2.8e-06%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1889 SAMTools SNP 143018 143018 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 143165 143165 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 143288 143288 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C248:99 scaffold1889 SAMTools SNP 143462 143462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 143555 143555 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1889 SAMTools SNP 144117 144117 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0237%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1889 SAMTools SNP 144624 144624 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1889 SAMTools SNP 147410 147410 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 154512 154512 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1889 SAMTools SNP 154515 154515 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1889 SAMTools SNP 154565 154565 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1889 SAMTools SNP 154969 154969 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1889 SAMTools SNP 154992 154992 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 155207 155207 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 171531 171531 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1889 SAMTools SNP 199584 199584 21.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold1889 SAMTools SNP 199864 199864 85.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold1889 SAMTools SNP 200272 200272 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1889 SAMTools SNP 201130 201130 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1889 SAMTools SNP 203472 203472 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1889 SAMTools SNP 208189 208189 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.1e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold1889 SAMTools SNP 208240 208240 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0064%2C2.5e-10%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1889 SAMTools SNP 208248 208248 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C9%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.0042%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1889 SAMTools SNP 209217 209217 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.43%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 211440 211440 73.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0%2C98%2C2%2C95:33 scaffold1889 SAMTools SNP 211680 211680 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D1%2C0.082%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C87%2C0:99 scaffold1889 SAMTools SNP 211713 211713 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C1%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.66%2C6.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold1889 SAMTools SNP 212199 212199 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C30%2C0:57 scaffold1889 SAMTools SNP 214024 214024 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1889 SAMTools SNP 221512 221512 22.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold1889 SAMTools SNP 221724 221724 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 223233 223233 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold1889 SAMTools SNP 246480 246480 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C20%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold1889 SAMTools SNP 246484 246484 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C31%2C35%3BMQ%3D50%3BFQ%3D136%3BPV4%3D4.6e-06%2C0.39%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold1889 SAMTools SNP 246516 246516 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1889 SAMTools SNP 250350 250350 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold1889 SAMTools SNP 265890 265890 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1889 SAMTools SNP 282722 282722 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C33%2C0:62 scaffold1889 SAMTools SNP 282856 282856 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C72%2C0:99 scaffold1889 SAMTools SNP 282873 282873 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold1889 SAMTools SNP 282941 282941 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C11%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.011%2C9.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1889 SAMTools SNP 283397 283397 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1889 SAMTools SNP 283542 283542 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C39%2C0:75 scaffold1889 SAMTools SNP 284004 284004 22.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0447%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.018%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold1889 SAMTools SNP 284024 284024 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C63%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1889 SAMTools SNP 284081 284081 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold1889 SAMTools SNP 284105 284105 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.033%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C223:87 scaffold1889 SAMTools SNP 284116 284116 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold1889 SAMTools SNP 284485 284485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1889 SAMTools SNP 284503 284503 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1889 SAMTools SNP 291259 291259 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold1889 SAMTools SNP 293024 293024 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.52%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1889 SAMTools SNP 294452 294452 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.2e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C233:28 scaffold1889 SAMTools SNP 294514 294514 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1889 SAMTools SNP 295155 295155 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.063%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1889 SAMTools SNP 295187 295187 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold1889 SAMTools SNP 296556 296556 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1889 SAMTools SNP 296579 296579 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.39%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1889 SAMTools SNP 297501 297501 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1889 SAMTools SNP 297972 297972 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1889 SAMTools SNP 298154 298154 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C204:99 scaffold1889 SAMTools SNP 298207 298207 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00027%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold1889 SAMTools SNP 298209 298209 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1889 SAMTools SNP 298236 298236 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1889 SAMTools SNP 298533 298533 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold1889 SAMTools SNP 298552 298552 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.24%2C0.13%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1889 SAMTools SNP 298839 298839 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1889 SAMTools SNP 298879 298879 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold1889 SAMTools SNP 298881 298881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.37%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold1889 SAMTools SNP 301102 301102 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1889 SAMTools SNP 301194 301194 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1889 SAMTools SNP 301228 301228 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.27%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold1889 SAMTools SNP 302666 302666 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C39%2C0:75 scaffold1889 SAMTools SNP 303112 303112 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1889 SAMTools SNP 303261 303261 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1889 SAMTools SNP 303296 303296 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold1889 SAMTools SNP 303311 303311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1889 SAMTools SNP 304913 304913 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C132%2C0:99 scaffold1889 SAMTools SNP 343457 343457 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 356773 356773 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold1889 SAMTools SNP 357139 357139 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 357463 357463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1889 SAMTools SNP 357662 357662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.27%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold1889 SAMTools SNP 372363 372363 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1889 SAMTools SNP 446253 446253 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1889 SAMTools SNP 446288 446288 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1889 SAMTools SNP 446298 446298 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold1889 SAMTools SNP 448617 448617 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 448668 448668 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1889 SAMTools SNP 449390 449390 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.0058%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C152:67 scaffold1889 SAMTools SNP 449398 449398 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold1889 SAMTools SNP 449458 449458 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1889 SAMTools SNP 450705 450705 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1889 SAMTools SNP 450725 450725 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1889 SAMTools SNP 451405 451405 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 451739 451739 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 452048 452048 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 452085 452085 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1889 SAMTools SNP 455101 455101 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C98:55 scaffold1889 SAMTools SNP 455107 455107 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.018%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C101:53 scaffold1889 SAMTools SNP 455935 455935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.12%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold1889 SAMTools SNP 455953 455953 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.19%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C198:99 scaffold1889 SAMTools SNP 455974 455974 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1889 SAMTools SNP 456271 456271 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.035%2C0.0011%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1889 SAMTools SNP 456296 456296 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C192:99 scaffold1889 SAMTools SNP 456532 456532 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1889 SAMTools SNP 456559 456559 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1889 SAMTools SNP 456630 456630 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold1889 SAMTools SNP 456782 456782 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1889 SAMTools SNP 456920 456920 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 457262 457262 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 457689 457689 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.27%2C6.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold1889 SAMTools SNP 457706 457706 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C12%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.33%2C4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C194:99 scaffold1889 SAMTools SNP 457800 457800 92.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1889 SAMTools SNP 457902 457902 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1889 SAMTools SNP 458041 458041 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1889 SAMTools SNP 458228 458228 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1889 SAMTools SNP 458279 458279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1889 SAMTools SNP 458761 458761 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1889 SAMTools SNP 459155 459155 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1889 SAMTools SNP 459180 459180 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 459210 459210 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 459597 459597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 464488 464488 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold1889 SAMTools SNP 464496 464496 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1889 SAMTools SNP 464523 464523 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1889 SAMTools SNP 464544 464544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1889 SAMTools SNP 464565 464565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1889 SAMTools SNP 465939 465939 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.004%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1889 SAMTools SNP 466020 466020 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C0.27%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1889 SAMTools SNP 466036 466036 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold1889 SAMTools SNP 466430 466430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1889 SAMTools SNP 466720 466720 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1889 SAMTools SNP 467041 467041 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1889 SAMTools SNP 468595 468595 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 468604 468604 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 469639 469639 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.18%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold1889 SAMTools SNP 469658 469658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 469706 469706 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold1889 SAMTools SNP 476252 476252 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 487298 487298 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 494248 494248 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1889 SAMTools SNP 494480 494480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1889 SAMTools SNP 494525 494525 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1889 SAMTools SNP 494531 494531 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1889 SAMTools SNP 496807 496807 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0015%2C2.8e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1889 SAMTools SNP 496947 496947 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.9e-29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C239:72 scaffold1889 SAMTools SNP 501962 501962 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C96%2C0:99 scaffold1889 SAMTools SNP 502515 502515 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C57%2C0:99 scaffold1889 SAMTools SNP 502521 502521 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1889 SAMTools SNP 502689 502689 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C9%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.67%2C7.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C243:98 scaffold1889 SAMTools SNP 502968 502968 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.12%2C2.7e-05%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold1889 SAMTools SNP 503091 503091 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C29%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C79%2C0:99 scaffold1889 SAMTools SNP 503400 503400 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1889 SAMTools SNP 504845 504845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C26%2C60%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C7.1e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 504878 504878 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C37%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 505868 505868 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold1889 SAMTools SNP 506028 506028 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1889 SAMTools SNP 506113 506113 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1889 SAMTools SNP 506452 506452 24.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1889 SAMTools SNP 508632 508632 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.034%2C2.3e-05%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1889 SAMTools SNP 508951 508951 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.72%2C2.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1889 SAMTools SNP 512246 512246 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1889 SAMTools SNP 513001 513001 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 513201 513201 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 513235 513235 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 513559 513559 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 513615 513615 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 513635 513635 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 514659 514659 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 514689 514689 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1889 SAMTools SNP 518809 518809 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold1889 SAMTools SNP 520423 520423 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold1889 SAMTools SNP 521982 521982 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold1889 SAMTools SNP 523171 523171 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold1889 SAMTools SNP 531928 531928 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.083%2C1.3e-05%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C202:34 scaffold1889 SAMTools SNP 531984 531984 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D48%3BFQ%3D19.1%3BPV4%3D1%2C0.048%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1889 SAMTools SNP 532984 532984 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C0.35%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C32:35 scaffold1889 SAMTools SNP 533815 533815 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold189 SAMTools SNP 14617 14617 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 14711 14711 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 14771 14771 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 60582 60582 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold189 SAMTools SNP 60710 60710 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D7.79%3BPV4%3D0.018%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C60:34 scaffold189 SAMTools SNP 61016 61016 96 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C72%2C39%2C128%2C0%2C116:63 scaffold189 SAMTools SNP 61219 61219 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C227:37 scaffold189 SAMTools SNP 61258 61258 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C35%2C3%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.48%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold189 SAMTools SNP 61560 61560 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C31%2C11%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold189 SAMTools SNP 61563 61563 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C35%2C11%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0049%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold189 SAMTools SNP 61858 61858 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 62666 62666 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 66396 66396 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C121:44 scaffold189 SAMTools SNP 67916 67916 72.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold189 SAMTools SNP 68387 68387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 69410 69410 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C134:78 scaffold189 SAMTools SNP 69413 69413 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C134:99 scaffold189 SAMTools SNP 70024 70024 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C213:48 scaffold189 SAMTools SNP 70581 70581 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.033%2C0.038%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold189 SAMTools SNP 71131 71131 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold189 SAMTools SNP 71552 71552 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold189 SAMTools SNP 71575 71575 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold189 SAMTools SNP 72315 72315 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.052%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold189 SAMTools SNP 72400 72400 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold189 SAMTools SNP 72913 72913 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.54%2C2.7e-13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold189 SAMTools SNP 73075 73075 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold189 SAMTools SNP 73537 73537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C21%2C29%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.0023%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 73965 73965 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C6%2C32%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 74703 74703 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.068%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold189 SAMTools SNP 101578 101578 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.43%2C0.0008%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C163:47 scaffold189 SAMTools SNP 102751 102751 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.26%2C7.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C237:99 scaffold189 SAMTools SNP 103179 103179 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C182:99 scaffold189 SAMTools SNP 108008 108008 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.093%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C3%2C0:6 scaffold189 SAMTools SNP 108030 108030 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold189 SAMTools SNP 108696 108696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 111737 111737 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C6%2C113%3BMQ%3D50%3BFQ%3D-250%3BPV4%3D0.16%2C2.1e-13%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C223%2C0:99 scaffold189 SAMTools SNP 112322 112322 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C9%3BMQ%3D48%3BFQ%3D106%3BPV4%3D1%2C0.19%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C222:99 scaffold189 SAMTools SNP 113155 113155 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold189 SAMTools SNP 113260 113260 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold189 SAMTools SNP 114917 114917 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold189 SAMTools SNP 114945 114945 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold189 SAMTools SNP 115301 115301 81.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.37%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C2:5 scaffold189 SAMTools SNP 115392 115392 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C36%2C0:69 scaffold189 SAMTools SNP 115697 115697 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C20%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.007%2C4.6e-40%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C165:61 scaffold189 SAMTools SNP 116332 116332 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold189 SAMTools SNP 120031 120031 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 120040 120040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 146157 146157 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold189 SAMTools SNP 163436 163436 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.12%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold189 SAMTools SNP 167980 167980 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.029%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C112:99 scaffold189 SAMTools SNP 169002 169002 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold189 SAMTools SNP 169023 169023 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold189 SAMTools SNP 169618 169618 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 171874 171874 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold189 SAMTools SNP 171900 171900 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold189 SAMTools SNP 171961 171961 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 173604 173604 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold189 SAMTools SNP 173611 173611 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold189 SAMTools SNP 173658 173658 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold189 SAMTools SNP 173695 173695 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 173704 173704 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold189 SAMTools SNP 173990 173990 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold189 SAMTools SNP 174013 174013 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold189 SAMTools SNP 174025 174025 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold189 SAMTools SNP 174059 174059 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold189 SAMTools SNP 175810 175810 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 175811 175811 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 176304 176304 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold189 SAMTools SNP 176317 176317 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 177567 177567 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 177579 177579 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 179074 179074 23.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold189 SAMTools SNP 179130 179130 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 179979 179979 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 183016 183016 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold189 SAMTools SNP 183382 183382 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold189 SAMTools SNP 183442 183442 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 184073 184073 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 184111 184111 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 184119 184119 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 184129 184129 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 184504 184504 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 186556 186556 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold189 SAMTools SNP 186603 186603 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 186653 186653 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.46%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C64:30 scaffold189 SAMTools SNP 187287 187287 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 187401 187401 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold189 SAMTools SNP 187422 187422 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold189 SAMTools SNP 187786 187786 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 187929 187929 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 189374 189374 5.45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C57%2C0:45 scaffold189 SAMTools SNP 193410 193410 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C158:49 scaffold189 SAMTools SNP 201902 201902 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold189 SAMTools SNP 201953 201953 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 203333 203333 35.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold189 SAMTools SNP 207962 207962 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.5e-05%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold189 SAMTools SNP 208541 208541 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold189 SAMTools SNP 212201 212201 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 212754 212754 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 212757 212757 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold189 SAMTools SNP 212831 212831 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold189 SAMTools SNP 212853 212853 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold189 SAMTools SNP 214630 214630 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C215:99 scaffold189 SAMTools SNP 214648 214648 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.26%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold189 SAMTools SNP 214666 214666 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C77:80 scaffold189 SAMTools SNP 214688 214688 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C134:77 scaffold189 SAMTools SNP 215003 215003 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 215019 215019 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 215086 215086 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 216138 216138 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C112:99 scaffold189 SAMTools SNP 216542 216542 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C248:31 scaffold189 SAMTools SNP 246683 246683 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold189 SAMTools SNP 262239 262239 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C110:91 scaffold189 SAMTools SNP 262248 262248 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold189 SAMTools SNP 273692 273692 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold189 SAMTools SNP 273704 273704 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold189 SAMTools SNP 273738 273738 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C244:99 scaffold189 SAMTools SNP 275536 275536 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 275576 275576 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.21%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold189 SAMTools SNP 278153 278153 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 283921 283921 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.049%2C3.7e-17%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold189 SAMTools SNP 284296 284296 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold189 SAMTools SNP 284727 284727 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.37%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C246:99 scaffold189 SAMTools SNP 284758 284758 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.15%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C202:99 scaffold189 SAMTools SNP 284778 284778 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C115:80 scaffold189 SAMTools SNP 285879 285879 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold189 SAMTools SNP 288632 288632 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold189 SAMTools SNP 290278 290278 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 291955 291955 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold189 SAMTools SNP 297471 297471 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold189 SAMTools SNP 297993 297993 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold189 SAMTools SNP 304350 304350 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold189 SAMTools SNP 304386 304386 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C31%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C188:99 scaffold189 SAMTools SNP 304408 304408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 320258 320258 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C41:44 scaffold189 SAMTools SNP 320299 320299 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold189 SAMTools SNP 321082 321082 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold189 SAMTools SNP 369385 369385 79 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C45%2C0%2C107%2C29%2C104:87 scaffold189 SAMTools SNP 370183 370183 17.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold189 SAMTools SNP 371120 371120 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C259%2C0%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold189 SAMTools SNP 391319 391319 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C76:40 scaffold189 SAMTools SNP 391392 391392 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold189 SAMTools SNP 391835 391835 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C120:36 scaffold189 SAMTools SNP 392324 392324 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C19%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C10%2C0:17 scaffold189 SAMTools SNP 392552 392552 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold189 SAMTools SNP 392568 392568 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold189 SAMTools SNP 392989 392989 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold189 SAMTools SNP 425148 425148 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold189 SAMTools SNP 428899 428899 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold189 SAMTools SNP 429086 429086 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 433356 433356 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold189 SAMTools SNP 441672 441672 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C5%2C31%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.16%2C1%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold189 SAMTools SNP 443844 443844 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C95%2C0%2C60%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C7.5e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold189 SAMTools SNP 445142 445142 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C48%2C43%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 446467 446467 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D784%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D327%2C83%2C294%2C80%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.72%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 447490 447490 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C116%2C77%2C144%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-07%2C0.027%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 451412 451412 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold189 SAMTools SNP 452138 452138 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold189 SAMTools SNP 459802 459802 50.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold189 SAMTools SNP 460981 460981 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.43%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C130:87 scaffold189 SAMTools SNP 461000 461000 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold189 SAMTools SNP 462715 462715 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 462890 462890 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 462919 462919 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold189 SAMTools SNP 463203 463203 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold189 SAMTools SNP 463248 463248 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold189 SAMTools SNP 463995 463995 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 464853 464853 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 465064 465064 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 466188 466188 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold189 SAMTools SNP 466643 466643 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 466960 466960 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 467190 467190 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 467525 467525 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 467528 467528 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 467851 467851 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold189 SAMTools SNP 468816 468816 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 469361 469361 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold189 SAMTools SNP 476743 476743 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 480890 480890 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold189 SAMTools SNP 485856 485856 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 487750 487750 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold189 SAMTools SNP 487786 487786 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C113:67 scaffold189 SAMTools SNP 488195 488195 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold189 SAMTools SNP 493480 493480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 493498 493498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 494718 494718 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C8.8e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold189 SAMTools SNP 494732 494732 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C36%2C0:69 scaffold189 SAMTools SNP 494741 494741 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold189 SAMTools SNP 494819 494819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold189 SAMTools SNP 495208 495208 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.097%2C0.00051%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold189 SAMTools SNP 496262 496262 212 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C69%2C0%2C246%2C56%2C243:99 scaffold189 SAMTools SNP 496930 496930 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.58%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C152:99 scaffold189 SAMTools SNP 498999 498999 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.27%2C0.00062%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold189 SAMTools SNP 499078 499078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 499372 499372 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 501088 501088 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.52%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold189 SAMTools SNP 509016 509016 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold189 SAMTools SNP 509397 509397 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold189 SAMTools SNP 509413 509413 208 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14%2C223%2C0%2C220:63 scaffold189 SAMTools SNP 514467 514467 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 515056 515056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold189 SAMTools SNP 515150 515150 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C160:57 scaffold189 SAMTools SNP 515752 515752 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold189 SAMTools SNP 515893 515893 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold189 SAMTools SNP 516292 516292 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold189 SAMTools SNP 517203 517203 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 517221 517221 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold189 SAMTools SNP 517263 517263 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold189 SAMTools SNP 517548 517548 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold189 SAMTools SNP 517599 517599 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold189 SAMTools SNP 517620 517620 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.052%2C0.23%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold189 SAMTools SNP 517922 517922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold189 SAMTools SNP 518428 518428 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.06%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold189 SAMTools SNP 518444 518444 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C106:39 scaffold189 SAMTools SNP 518907 518907 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 520538 520538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold189 SAMTools SNP 521621 521621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold189 SAMTools SNP 521644 521644 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold189 SAMTools SNP 521712 521712 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold189 SAMTools SNP 521853 521853 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold189 SAMTools SNP 522876 522876 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold189 SAMTools SNP 538445 538445 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold189 SAMTools SNP 538718 538718 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold189 SAMTools SNP 560164 560164 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1890 SAMTools SNP 403 403 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold1890 SAMTools SNP 705 705 14.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold1890 SAMTools SNP 40699 40699 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 41074 41074 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 41439 41439 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 42489 42489 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 42718 42718 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1890 SAMTools SNP 43293 43293 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1890 SAMTools SNP 43303 43303 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1890 SAMTools SNP 49906 49906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold1890 SAMTools SNP 49921 49921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C63%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1890 SAMTools SNP 50098 50098 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C221%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1890 SAMTools SNP 50147 50147 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1890 SAMTools SNP 82114 82114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 84329 84329 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold1890 SAMTools SNP 88498 88498 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1890 SAMTools SNP 88986 88986 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1890 SAMTools SNP 88995 88995 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1890 SAMTools SNP 90165 90165 129 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D32%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C30%2C0:57 scaffold1890 SAMTools SNP 91751 91751 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C0%2C8%3BMQ%3D48%3BFQ%3D70%3BPV4%3D0.0044%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1890 SAMTools SNP 92281 92281 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C3%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D0.52%2C0.00076%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1890 SAMTools SNP 92300 92300 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.059%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1890 SAMTools SNP 92735 92735 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C5%2C36%2C1%3BMQ%3D49%3BFQ%3D213%3BPV4%3D0.39%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold1890 SAMTools SNP 96474 96474 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C30%2C0:57 scaffold1890 SAMTools SNP 97177 97177 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C13%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.69%2C5.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1890 SAMTools SNP 98614 98614 9.97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold1890 SAMTools SNP 98662 98662 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C42%2C0:76 scaffold1890 SAMTools SNP 99099 99099 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1890 SAMTools SNP 100131 100131 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1890 SAMTools SNP 101799 101799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold1890 SAMTools SNP 102497 102497 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C185:39 scaffold1890 SAMTools SNP 102515 102515 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0023%2C9.8e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C217:78 scaffold1890 SAMTools SNP 102671 102671 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.028%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold1890 SAMTools SNP 104000 104000 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1890 SAMTools SNP 104808 104808 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C14%2C4%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.71%2C1e-17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold1890 SAMTools SNP 104880 104880 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1890 SAMTools SNP 105897 105897 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C12%2C7%2C12%3BMQ%3D50%3BFQ%3D220%3BPV4%3D5.5e-05%2C0.015%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold1890 SAMTools SNP 106293 106293 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold1890 SAMTools SNP 106317 106317 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.68%2C0.48%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold1890 SAMTools SNP 106338 106338 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 106728 106728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C20%2C42%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 106731 106731 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C20%2C43%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 109305 109305 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.058%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 109313 109313 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.29%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1890 SAMTools SNP 110305 110305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 110710 110710 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C0%2C21%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0012%2C5.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold1890 SAMTools SNP 110878 110878 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.7e-13%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C174:53 scaffold1890 SAMTools SNP 111274 111274 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C7%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.13%2C4.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold1890 SAMTools SNP 111925 111925 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C28%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.00073%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 113013 113013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1890 SAMTools SNP 113070 113070 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1890 SAMTools SNP 114412 114412 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C112:72 scaffold1890 SAMTools SNP 114494 114494 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1890 SAMTools SNP 114508 114508 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1890 SAMTools SNP 115128 115128 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold1890 SAMTools SNP 120220 120220 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C11%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C247%2C0:99 scaffold1890 SAMTools SNP 120238 120238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1890 SAMTools SNP 120298 120298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C6%2C41%3BMQ%3D50%3BFQ%3D-83%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C0:99 scaffold1890 SAMTools SNP 120699 120699 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C8%2C114%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0072%2C7.1e-39%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold1890 SAMTools SNP 120723 120723 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.0015%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C22%2C0:41 scaffold1890 SAMTools SNP 120771 120771 69.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold1890 SAMTools SNP 120921 120921 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C14%2C22%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 120927 120927 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.086%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1890 SAMTools SNP 121417 121417 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C314%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1890 SAMTools SNP 124897 124897 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.51%2C0.0015%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1890 SAMTools SNP 125047 125047 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold1890 SAMTools SNP 126139 126139 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1890 SAMTools SNP 127513 127513 81.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold1890 SAMTools SNP 129908 129908 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1890 SAMTools SNP 137904 137904 31.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold1890 SAMTools SNP 138003 138003 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold1890 SAMTools SNP 138093 138093 39.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold1890 SAMTools SNP 151412 151412 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D38%3BFQ%3D8.64%3BPV4%3D0.43%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold1890 SAMTools SNP 167963 167963 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 168001 168001 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1890 SAMTools SNP 189545 189545 10.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold1890 SAMTools SNP 190007 190007 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 190234 190234 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 199020 199020 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D5.73%3BPV4%3D1%2C5.5e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C32:35 scaffold1890 SAMTools SNP 199163 199163 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 199737 199737 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1890 SAMTools SNP 199979 199979 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1890 SAMTools SNP 200019 200019 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold1890 SAMTools SNP 203564 203564 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C170:99 scaffold1890 SAMTools SNP 203961 203961 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1890 SAMTools SNP 204009 204009 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 204485 204485 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1890 SAMTools SNP 204508 204508 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1890 SAMTools SNP 206512 206512 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 206554 206554 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 206608 206608 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1890 SAMTools SNP 206617 206617 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 206654 206654 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1890 SAMTools SNP 207815 207815 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1890 SAMTools SNP 207842 207842 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1890 SAMTools SNP 210072 210072 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1890 SAMTools SNP 210164 210164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1890 SAMTools SNP 210167 210167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1890 SAMTools SNP 210331 210331 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1890 SAMTools SNP 210724 210724 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold1890 SAMTools SNP 211210 211210 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.59%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold1890 SAMTools SNP 211219 211219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1890 SAMTools SNP 213019 213019 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold1890 SAMTools SNP 213043 213043 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1890 SAMTools SNP 213080 213080 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold1890 SAMTools SNP 213606 213606 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.032%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1890 SAMTools SNP 213627 213627 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1890 SAMTools SNP 222398 222398 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1890 SAMTools SNP 223076 223076 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C18%2C0:33 scaffold1890 SAMTools SNP 223649 223649 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1890 SAMTools SNP 246616 246616 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1890 SAMTools SNP 273077 273077 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1890 SAMTools SNP 273101 273101 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1890 SAMTools SNP 280679 280679 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.048%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold1890 SAMTools SNP 281077 281077 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1890 SAMTools SNP 286883 286883 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1890 SAMTools SNP 286961 286961 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold1890 SAMTools SNP 286973 286973 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold1891 SAMTools SNP 2780 2780 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold1891 SAMTools SNP 2795 2795 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.001%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C110:51 scaffold1891 SAMTools SNP 3322 3322 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1891 SAMTools SNP 3446 3446 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C45%2C0:87 scaffold1891 SAMTools SNP 3597 3597 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold1891 SAMTools SNP 4453 4453 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1891 SAMTools SNP 4468 4468 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1891 SAMTools SNP 4850 4850 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.17%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C193:99 scaffold1891 SAMTools SNP 8770 8770 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold1891 SAMTools SNP 10498 10498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 12966 12966 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C3.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C217:86 scaffold1891 SAMTools SNP 13144 13144 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C66%2C0:99 scaffold1891 SAMTools SNP 13776 13776 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0238%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.14%2C2.1e-11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1891 SAMTools SNP 21442 21442 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1891 SAMTools SNP 21841 21841 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1891 SAMTools SNP 22284 22284 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1891 SAMTools SNP 22492 22492 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1891 SAMTools SNP 22498 22498 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold1891 SAMTools SNP 22533 22533 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.7e-07%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C229:46 scaffold1891 SAMTools SNP 22744 22744 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1891 SAMTools SNP 23186 23186 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1891 SAMTools SNP 23239 23239 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1891 SAMTools SNP 24214 24214 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1891 SAMTools SNP 24845 24845 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1891 SAMTools SNP 24858 24858 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold1891 SAMTools SNP 24871 24871 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.014%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 25154 25154 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 25175 25175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 25205 25205 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold1891 SAMTools SNP 26106 26106 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold1891 SAMTools SNP 26149 26149 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1891 SAMTools SNP 28834 28834 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 28849 28849 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 43604 43604 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold1891 SAMTools SNP 56851 56851 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C232:99 scaffold1891 SAMTools SNP 56888 56888 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C3%2C108%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 57792 57792 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C16%2C106%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 58075 58075 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C159%2C6%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 58093 58093 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C179%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 58111 58111 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C11%2C49%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.45%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold1891 SAMTools SNP 58119 58119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C41%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 58373 58373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 59443 59443 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 60653 60653 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D672%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C60%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1891 SAMTools SNP 61236 61236 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C39%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold1891 SAMTools SNP 61254 61254 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C36%2C32%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.12%2C0.098%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold1891 SAMTools SNP 61292 61292 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1891 SAMTools SNP 61312 61312 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1891 SAMTools SNP 61365 61365 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C30%2C31%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.00029%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1891 SAMTools SNP 62332 62332 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C5%2C64%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 62903 62903 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D718%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C156%2C170%2C375%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold1891 SAMTools SNP 62969 62969 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C66%2C141%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 63437 63437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 63611 63611 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C157%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 64036 64036 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 64049 64049 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C109%2C29%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1.9e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 64212 64212 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1891 SAMTools SNP 64747 64747 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D645%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C300%2C10%2C191%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-08%2C0.026%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 64980 64980 27.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C6%2C55%2C0%2C52:21 scaffold1891 SAMTools SNP 65245 65245 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 65299 65299 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C33%2C9%2C4%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold1891 SAMTools SNP 65541 65541 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C102%2C31%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-08%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 65578 65578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 65769 65769 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C110%2C0%2C97%3BMQ%3D50%3BFQ%3D97%3BPV4%3D4.1e-20%2C7.4e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold1891 SAMTools SNP 65855 65855 86 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0%2C106%2C1%2C100:63 scaffold1891 SAMTools SNP 65968 65968 45.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0141%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.064%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C14:17 scaffold1891 SAMTools SNP 69468 69468 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1891 SAMTools SNP 69471 69471 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1891 SAMTools SNP 72060 72060 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1891 SAMTools SNP 72084 72084 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1891 SAMTools SNP 72551 72551 116 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold1891 SAMTools SNP 72587 72587 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C0.04%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C110:99 scaffold1891 SAMTools SNP 72654 72654 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold1891 SAMTools SNP 72704 72704 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold1891 SAMTools SNP 74238 74238 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 75858 75858 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1891 SAMTools SNP 75878 75878 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1891 SAMTools SNP 77561 77561 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 77574 77574 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 83117 83117 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C193%2C0:99 scaffold1891 SAMTools SNP 83168 83168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C1%2C21%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1891 SAMTools SNP 83796 83796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1891 SAMTools SNP 83807 83807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1891 SAMTools SNP 83864 83864 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C255%2C0:99 scaffold1891 SAMTools SNP 83948 83948 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 84432 84432 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C60%2C4%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 84450 84450 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C239:60 scaffold1891 SAMTools SNP 84543 84543 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D79.8%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C121:99 scaffold1891 SAMTools SNP 84718 84718 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C244:99 scaffold1891 SAMTools SNP 85252 85252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C140%2C64%2C206%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 85995 85995 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C207%2C4%2C151%3BMQ%3D50%3BFQ%3D205%3BPV4%3D5.5e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1891 SAMTools SNP 86076 86076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 86088 86088 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1891 SAMTools SNP 86504 86504 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C5%2C69%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-08%2C0.1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 86780 86780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C40%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1891 SAMTools SNP 86810 86810 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1891 SAMTools SNP 86904 86904 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C27%2C0:50 scaffold1891 SAMTools SNP 88953 88953 44.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0335%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.028%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C9:12 scaffold1891 SAMTools SNP 89348 89348 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C81%2C32%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 89381 89381 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C80%2C20%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 89432 89432 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C42%2C48%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 89614 89614 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C18%2C9%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0034%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold1891 SAMTools SNP 89636 89636 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C41%2C8%2C16%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1.6e-05%2C4.3e-05%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1891 SAMTools SNP 90139 90139 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C19%2C27%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.7e-06%2C1%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 90897 90897 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C220%2C1%2C230%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1891 SAMTools SNP 91052 91052 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold1891 SAMTools SNP 91078 91078 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold1891 SAMTools SNP 92132 92132 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1891 SAMTools SNP 92178 92178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1891 SAMTools SNP 111481 111481 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold1891 SAMTools SNP 121758 121758 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1891 SAMTools SNP 122382 122382 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1891 SAMTools SNP 122874 122874 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1891 SAMTools SNP 128095 128095 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1891 SAMTools SNP 128453 128453 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1891 SAMTools SNP 129194 129194 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1891 SAMTools SNP 129216 129216 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1891 SAMTools SNP 129969 129969 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 134167 134167 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1891 SAMTools SNP 134644 134644 46.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold1891 SAMTools SNP 134848 134848 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold1891 SAMTools SNP 135129 135129 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1891 SAMTools SNP 135172 135172 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold1891 SAMTools SNP 135533 135533 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 135581 135581 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1891 SAMTools SNP 135881 135881 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 136165 136165 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1891 SAMTools SNP 158769 158769 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1891 SAMTools SNP 158811 158811 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 158867 158867 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 159528 159528 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1891 SAMTools SNP 159555 159555 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 159667 159667 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 162079 162079 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1891 SAMTools SNP 165062 165062 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold1891 SAMTools SNP 165068 165068 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1891 SAMTools SNP 165194 165194 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold1891 SAMTools SNP 212451 212451 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1891 SAMTools SNP 215270 215270 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C80:57 scaffold1891 SAMTools SNP 215272 215272 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C75:36 scaffold1892 SAMTools SNP 3837 3837 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 3883 3883 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 3991 3991 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 4022 4022 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 24791 24791 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C223:83 scaffold1892 SAMTools SNP 25652 25652 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold1892 SAMTools SNP 31456 31456 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C0.19%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold1892 SAMTools SNP 31468 31468 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1892 SAMTools SNP 31477 31477 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 31479 31479 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 31535 31535 67.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold1892 SAMTools SNP 31552 31552 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1892 SAMTools SNP 31860 31860 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold1892 SAMTools SNP 31864 31864 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.001%2C1%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold1892 SAMTools SNP 31877 31877 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1892 SAMTools SNP 31901 31901 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C62%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.044%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1892 SAMTools SNP 31933 31933 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C250:99 scaffold1892 SAMTools SNP 33897 33897 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1892 SAMTools SNP 33921 33921 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1892 SAMTools SNP 35830 35830 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C6%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0012%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1892 SAMTools SNP 35957 35957 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C10%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 37560 37560 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.32%2C0.37%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1892 SAMTools SNP 37638 37638 22.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1892 SAMTools SNP 37881 37881 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C63%2C0:99 scaffold1892 SAMTools SNP 38757 38757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C64%2C14%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 41056 41056 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C56%2C9%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 41059 41059 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C52%2C10%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 41105 41105 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 42036 42036 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C69%2C18%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D3.4e-12%2C5.4e-16%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1892 SAMTools SNP 43042 43042 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C33%2C0:63 scaffold1892 SAMTools SNP 43837 43837 58.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold1892 SAMTools SNP 47659 47659 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C81%2C0:99 scaffold1892 SAMTools SNP 51317 51317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C107%2C1%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 56075 56075 95.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold1892 SAMTools SNP 68586 68586 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1892 SAMTools SNP 68620 68620 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1892 SAMTools SNP 70573 70573 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 70607 70607 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1892 SAMTools SNP 70615 70615 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1892 SAMTools SNP 70618 70618 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1892 SAMTools SNP 70620 70620 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C235:71 scaffold1892 SAMTools SNP 70624 70624 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.2%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold1892 SAMTools SNP 71678 71678 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C113%2C3%2C52%3BMQ%3D50%3BFQ%3D185%3BPV4%3D9.1e-05%2C0.38%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1892 SAMTools SNP 71686 71686 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C13%2C47%2C141%3BMQ%3D50%3BFQ%3D-162%3BPV4%3D0.53%2C0.015%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1892 SAMTools SNP 72703 72703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C12%2C82%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C5.6e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 76218 76218 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C19%2C6%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.71%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1892 SAMTools SNP 76219 76219 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C19%2C4%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1892 SAMTools SNP 77085 77085 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.00015%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1892 SAMTools SNP 77099 77099 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.009%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1892 SAMTools SNP 115332 115332 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1892 SAMTools SNP 121633 121633 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold1892 SAMTools SNP 121765 121765 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1892 SAMTools SNP 121782 121782 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1892 SAMTools SNP 128830 128830 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1892 SAMTools SNP 136610 136610 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C152:99 scaffold1892 SAMTools SNP 136617 136617 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold1892 SAMTools SNP 136744 136744 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1892 SAMTools SNP 136775 136775 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1892 SAMTools SNP 136841 136841 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1892 SAMTools SNP 137559 137559 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1892 SAMTools SNP 138562 138562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C56%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C0.23%2C1%2C6.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 138949 138949 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C100%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C83:86 scaffold1892 SAMTools SNP 139013 139013 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1892 SAMTools SNP 168600 168600 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 168861 168861 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1892 SAMTools SNP 168882 168882 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1892 SAMTools SNP 174850 174850 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1892 SAMTools SNP 174880 174880 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C27%2C0:51 scaffold1892 SAMTools SNP 176267 176267 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1892 SAMTools SNP 176280 176280 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1892 SAMTools SNP 176324 176324 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1892 SAMTools SNP 177972 177972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1892 SAMTools SNP 181179 181179 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D0.47%2C3.9e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C63:66 scaffold1892 SAMTools SNP 181381 181381 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1892 SAMTools SNP 181722 181722 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1892 SAMTools SNP 183352 183352 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C45%2C0:87 scaffold1892 SAMTools SNP 183765 183765 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold1892 SAMTools SNP 184276 184276 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold1892 SAMTools SNP 184294 184294 37.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold1892 SAMTools SNP 184417 184417 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C127:67 scaffold1892 SAMTools SNP 189989 189989 44.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1892 SAMTools SNP 194249 194249 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold1892 SAMTools SNP 195309 195309 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold1892 SAMTools SNP 195369 195369 22.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold1892 SAMTools SNP 195411 195411 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold1892 SAMTools SNP 195429 195429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1892 SAMTools SNP 196117 196117 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C14%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold1892 SAMTools SNP 196120 196120 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1892 SAMTools SNP 196141 196141 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C14%2C4%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1892 SAMTools SNP 197433 197433 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1892 SAMTools SNP 197472 197472 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1892 SAMTools SNP 197493 197493 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold1892 SAMTools SNP 197544 197544 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.067%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold1892 SAMTools SNP 205749 205749 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1892 SAMTools SNP 205770 205770 48.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold1892 SAMTools SNP 211233 211233 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C36%2C0:69 scaffold1892 SAMTools SNP 211642 211642 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1892 SAMTools SNP 217947 217947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1892 SAMTools SNP 218157 218157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1227%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D482%2C184%2C356%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 218848 218848 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C145:99 scaffold1892 SAMTools SNP 218939 218939 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.7e-08%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C71:34 scaffold1892 SAMTools SNP 219537 219537 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1892 SAMTools SNP 223916 223916 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1892 SAMTools SNP 224569 224569 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D243%2C63%2C173%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-09%2C0.19%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 225349 225349 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.2%2C0.00047%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C195:97 scaffold1892 SAMTools SNP 228320 228320 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1892 SAMTools SNP 229058 229058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D896%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C567%2C292%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.55%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 230368 230368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1173%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C804%2C369%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 230617 230617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D706%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C499%2C168%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 231075 231075 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C111%2C72%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 231182 231182 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D665%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 231243 231243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D847%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C158%2C197%2C266%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-05%2C7.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 231679 231679 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D573%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C94%2C199%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1.2e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 231697 231697 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D177%2C50%2C137%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-07%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 232046 232046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1011%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 232591 232591 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1244%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D252%2C217%2C305%2C470%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 232609 232609 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1248%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C490%2C223%2C232%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.00022%2C0.032%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 232862 232862 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D620%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C198%2C73%2C185%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.32%2C1%2C0.059%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 233382 233382 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C100%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C255%2C0:72 scaffold1892 SAMTools SNP 233715 233715 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C97%3BMQ%3D2%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C255%2C0:99 scaffold1892 SAMTools SNP 233899 233899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C11%3BMQ%3D46%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold1892 SAMTools SNP 234235 234235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C25%2C213%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-15%2C0.03%2C1%2C1.7e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 234273 234273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C65%2C46%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 234573 234573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 234732 234732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 235962 235962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C276%2C19%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C4.2e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 235965 235965 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C291%2C21%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C5.2e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 236010 236010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C142%2C65%2C274%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 237346 237346 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C194%2C23%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 237352 237352 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C180%2C20%2C51%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1892 SAMTools SNP 237433 237433 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D835%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D445%2C57%2C228%2C7%3BMQ%3D50%3BFQ%3D208%3BPV4%3D6.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold1892 SAMTools SNP 238021 238021 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D725%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C272%2C8%2C434%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 238413 238413 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C13%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold1892 SAMTools SNP 238740 238740 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C47%2C4%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.0021%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 238800 238800 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C168%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1892 SAMTools SNP 239294 239294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C22%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1892 SAMTools SNP 239360 239360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1892 SAMTools SNP 239368 239368 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C13%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.64%2C1.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1892 SAMTools SNP 239431 239431 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1892 SAMTools SNP 239780 239780 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 240693 240693 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1892 SAMTools SNP 252159 252159 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold1892 SAMTools SNP 252288 252288 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C25%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C1.2e-12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C34%2C0:65 scaffold1892 SAMTools SNP 252424 252424 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1892 SAMTools SNP 252472 252472 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1892 SAMTools SNP 255100 255100 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1892 SAMTools SNP 255526 255526 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.44%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1892 SAMTools SNP 255617 255617 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 256700 256700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1892 SAMTools SNP 256731 256731 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold1892 SAMTools SNP 257173 257173 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D43%2C5%2C23%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.71%2C4.7e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1892 SAMTools SNP 257273 257273 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C1%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 259492 259492 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1892 SAMTools SNP 259515 259515 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 259752 259752 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold1892 SAMTools SNP 259788 259788 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C71:56 scaffold1892 SAMTools SNP 259957 259957 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1892 SAMTools SNP 261537 261537 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1892 SAMTools SNP 261714 261714 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1892 SAMTools SNP 261726 261726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1892 SAMTools SNP 266926 266926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1892 SAMTools SNP 267095 267095 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1892 SAMTools SNP 267679 267679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1892 SAMTools SNP 274236 274236 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1892 SAMTools SNP 274261 274261 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.58%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1892 SAMTools SNP 276947 276947 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C27%2C8%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.31%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold1892 SAMTools SNP 276974 276974 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.37%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1892 SAMTools SNP 277549 277549 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C2%2C4%3BMQ%3D36%3BFQ%3D15.1%3BPV4%3D0.39%2C0.27%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1892 SAMTools SNP 285797 285797 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1892 SAMTools SNP 286063 286063 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1892 SAMTools SNP 286073 286073 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 418 418 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 465 465 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold1893 SAMTools SNP 620 620 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 4335 4335 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold1893 SAMTools SNP 6728 6728 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C246:99 scaffold1893 SAMTools SNP 8691 8691 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C169:82 scaffold1893 SAMTools SNP 10482 10482 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1893 SAMTools SNP 10670 10670 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold1893 SAMTools SNP 11286 11286 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold1893 SAMTools SNP 11611 11611 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold1893 SAMTools SNP 11641 11641 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1893 SAMTools SNP 11778 11778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1893 SAMTools SNP 12166 12166 38.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold1893 SAMTools SNP 13396 13396 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 14057 14057 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.058%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C188:99 scaffold1893 SAMTools SNP 14572 14572 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C87:90 scaffold1893 SAMTools SNP 16128 16128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1893 SAMTools SNP 31915 31915 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 50697 50697 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.44%2C0.15%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C156:99 scaffold1893 SAMTools SNP 51047 51047 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1893 SAMTools SNP 51303 51303 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold1893 SAMTools SNP 51309 51309 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold1893 SAMTools SNP 51342 51342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1893 SAMTools SNP 52500 52500 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1893 SAMTools SNP 53104 53104 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C249:96 scaffold1893 SAMTools SNP 53144 53144 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C222:99 scaffold1893 SAMTools SNP 53471 53471 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1893 SAMTools SNP 53500 53500 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold1893 SAMTools SNP 54445 54445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1893 SAMTools SNP 54478 54478 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C81%2C0:99 scaffold1893 SAMTools SNP 56605 56605 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C195:99 scaffold1893 SAMTools SNP 56635 56635 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.002%2C6.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C242:89 scaffold1893 SAMTools SNP 56639 56639 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.00059%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1893 SAMTools SNP 66173 66173 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C54%2C0:99 scaffold1893 SAMTools SNP 67133 67133 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C53%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.15%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 68330 68330 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C8%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.34%2C8.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1893 SAMTools SNP 68360 68360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 68957 68957 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C62%2C30%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold1893 SAMTools SNP 69455 69455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 69593 69593 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C67%2C0%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1893 SAMTools SNP 69988 69988 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C67%2C0%2C10%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1893 SAMTools SNP 70012 70012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C51%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1893 SAMTools SNP 70045 70045 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1893 SAMTools SNP 70084 70084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C101%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold1893 SAMTools SNP 70099 70099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.4%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 70105 70105 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 72118 72118 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1893 SAMTools SNP 77207 77207 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C168%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 77329 77329 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C52%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D3.6e-19%2C1.4e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1893 SAMTools SNP 77784 77784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C7%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 78140 78140 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C527%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 78199 78199 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C30%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.7e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1893 SAMTools SNP 78667 78667 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1893 SAMTools SNP 80358 80358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1893 SAMTools SNP 80403 80403 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C13%2C7%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.19%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold1893 SAMTools SNP 80569 80569 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.13%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1893 SAMTools SNP 80584 80584 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1893 SAMTools SNP 81351 81351 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 83104 83104 60.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold1893 SAMTools SNP 85535 85535 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1893 SAMTools SNP 85577 85577 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold1893 SAMTools SNP 86188 86188 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1893 SAMTools SNP 86198 86198 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold1893 SAMTools SNP 86218 86218 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1893 SAMTools SNP 86272 86272 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold1893 SAMTools SNP 86288 86288 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold1893 SAMTools SNP 86303 86303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1893 SAMTools SNP 87095 87095 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold1893 SAMTools SNP 90975 90975 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1893 SAMTools SNP 91377 91377 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C98%2C7%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 93744 93744 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C279%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 93797 93797 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C55%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 93870 93870 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1893 SAMTools SNP 95012 95012 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C0%2C13%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold1893 SAMTools SNP 95015 95015 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1893 SAMTools SNP 95536 95536 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D619%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C148%2C395%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 96011 96011 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 96035 96035 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 96509 96509 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1893 SAMTools SNP 96699 96699 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1893 SAMTools SNP 96790 96790 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C54%2C0:99 scaffold1893 SAMTools SNP 102849 102849 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1893 SAMTools SNP 104298 104298 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C216:99 scaffold1893 SAMTools SNP 104342 104342 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold1893 SAMTools SNP 108084 108084 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1893 SAMTools SNP 108311 108311 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1893 SAMTools SNP 108329 108329 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1893 SAMTools SNP 108407 108407 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1893 SAMTools SNP 108440 108440 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C21%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1893 SAMTools SNP 109230 109230 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1893 SAMTools SNP 109365 109365 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 112159 112159 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1893 SAMTools SNP 112725 112725 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1893 SAMTools SNP 112746 112746 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1893 SAMTools SNP 114820 114820 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 114824 114824 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 114836 114836 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1893 SAMTools SNP 114854 114854 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1893 SAMTools SNP 114869 114869 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.065%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1893 SAMTools SNP 115197 115197 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1893 SAMTools SNP 115236 115236 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.032%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold1893 SAMTools SNP 116206 116206 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1893 SAMTools SNP 117015 117015 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C19%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.2%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1893 SAMTools SNP 117054 117054 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1893 SAMTools SNP 117502 117502 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1893 SAMTools SNP 127767 127767 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1893 SAMTools SNP 130732 130732 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 130829 130829 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1294%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C10%2C0:17 scaffold1893 SAMTools SNP 131003 131003 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C30%2C0:57 scaffold1893 SAMTools SNP 131175 131175 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D762%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D9.47%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C54:37 scaffold1893 SAMTools SNP 131252 131252 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1086%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.32%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C34%2C0:65 scaffold1893 SAMTools SNP 131398 131398 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C178%2C36%2C133%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.72%2C2.3e-297%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold1893 SAMTools SNP 131693 131693 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C83%2C5%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 131961 131961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C1%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold1893 SAMTools SNP 131978 131978 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 133573 133573 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C183%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1893 SAMTools SNP 133578 133578 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C173%2C15%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-09%2C0.023%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1893 SAMTools SNP 140334 140334 7.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold1893 SAMTools SNP 150203 150203 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1893 SAMTools SNP 151415 151415 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1893 SAMTools SNP 151449 151449 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1893 SAMTools SNP 152830 152830 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1893 SAMTools SNP 152855 152855 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold1893 SAMTools SNP 191143 191143 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1893 SAMTools SNP 191215 191215 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1893 SAMTools SNP 191556 191556 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1893 SAMTools SNP 194708 194708 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1893 SAMTools SNP 194720 194720 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1893 SAMTools SNP 195143 195143 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1893 SAMTools SNP 195186 195186 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold1893 SAMTools SNP 195203 195203 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C24%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0078%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C200:99 scaffold1893 SAMTools SNP 195257 195257 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C4%2C0%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1893 SAMTools SNP 199775 199775 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1893 SAMTools SNP 200104 200104 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold1893 SAMTools SNP 200454 200454 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1893 SAMTools SNP 202919 202919 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1893 SAMTools SNP 203422 203422 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1894 SAMTools SNP 21095 21095 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C24%2C0:45 scaffold1894 SAMTools SNP 21123 21123 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold1894 SAMTools SNP 28326 28326 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1894 SAMTools SNP 30720 30720 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1894 SAMTools SNP 30752 30752 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold1894 SAMTools SNP 32963 32963 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1894 SAMTools SNP 32996 32996 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1894 SAMTools SNP 32999 32999 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1894 SAMTools SNP 33015 33015 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.015%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1894 SAMTools SNP 33049 33049 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1894 SAMTools SNP 35652 35652 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1894 SAMTools SNP 37590 37590 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold1894 SAMTools SNP 38758 38758 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.044%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1894 SAMTools SNP 39013 39013 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold1894 SAMTools SNP 44256 44256 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1894 SAMTools SNP 53943 53943 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1894 SAMTools SNP 54913 54913 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1894 SAMTools SNP 55468 55468 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1894 SAMTools SNP 56242 56242 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C14%3BMQ%3D45%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1894 SAMTools SNP 56257 56257 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D38%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C48%2C0:93 scaffold1894 SAMTools SNP 56284 56284 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C33%2C0:63 scaffold1894 SAMTools SNP 58423 58423 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D40%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C163:99 scaffold1894 SAMTools SNP 61090 61090 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold1894 SAMTools SNP 61137 61137 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.098%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1894 SAMTools SNP 61658 61658 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold1894 SAMTools SNP 61763 61763 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D34.8%3BPV4%3D0.46%2C1e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C76:65 scaffold1894 SAMTools SNP 61850 61850 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 61889 61889 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 63840 63840 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 63849 63849 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 64972 64972 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 65497 65497 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 66347 66347 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 66513 66513 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 66531 66531 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 67893 67893 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1894 SAMTools SNP 68018 68018 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1894 SAMTools SNP 68328 68328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1894 SAMTools SNP 68519 68519 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1894 SAMTools SNP 68556 68556 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1894 SAMTools SNP 68568 68568 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 86366 86366 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 88509 88509 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1894 SAMTools SNP 88512 88512 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 88990 88990 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1894 SAMTools SNP 89029 89029 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1894 SAMTools SNP 116003 116003 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 118197 118197 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold1894 SAMTools SNP 118218 118218 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1894 SAMTools SNP 125077 125077 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 126214 126214 31.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold1894 SAMTools SNP 126256 126256 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1894 SAMTools SNP 126308 126308 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1894 SAMTools SNP 127103 127103 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1894 SAMTools SNP 133386 133386 64.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold1894 SAMTools SNP 133591 133591 21.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold1894 SAMTools SNP 170909 170909 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1894 SAMTools SNP 189678 189678 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.44%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C152:99 scaffold1894 SAMTools SNP 195935 195935 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 198251 198251 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 217867 217867 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1894 SAMTools SNP 219322 219322 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1894 SAMTools SNP 219451 219451 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1894 SAMTools SNP 228099 228099 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1894 SAMTools SNP 228671 228671 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 335548 335548 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.44%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C154:64 scaffold1894 SAMTools SNP 335741 335741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1894 SAMTools SNP 336049 336049 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1894 SAMTools SNP 336525 336525 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1894 SAMTools SNP 337236 337236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold1894 SAMTools SNP 337897 337897 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1894 SAMTools SNP 338647 338647 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.32%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C207:99 scaffold1894 SAMTools SNP 338923 338923 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.47%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1894 SAMTools SNP 338965 338965 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.53%2C0.44%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1894 SAMTools SNP 338980 338980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1894 SAMTools SNP 339164 339164 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold1894 SAMTools SNP 339194 339194 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1894 SAMTools SNP 340528 340528 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1894 SAMTools SNP 340758 340758 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1894 SAMTools SNP 340791 340791 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.2%2C0.029%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C202:37 scaffold1894 SAMTools SNP 341201 341201 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.0013%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1894 SAMTools SNP 341237 341237 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1894 SAMTools SNP 342252 342252 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1894 SAMTools SNP 342419 342419 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1894 SAMTools SNP 342963 342963 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold1894 SAMTools SNP 343551 343551 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1894 SAMTools SNP 343584 343584 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C60:63 scaffold1894 SAMTools SNP 343647 343647 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1894 SAMTools SNP 344218 344218 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold1894 SAMTools SNP 345487 345487 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C63%2C0:99 scaffold1894 SAMTools SNP 347783 347783 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C81%2C0:99 scaffold1894 SAMTools SNP 348107 348107 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold1895 SAMTools SNP 2390 2390 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 2433 2433 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1895 SAMTools SNP 2481 2481 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 10348 10348 19 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1895 SAMTools SNP 10515 10515 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1895 SAMTools SNP 11632 11632 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 11652 11652 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 35640 35640 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1895 SAMTools SNP 35700 35700 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1895 SAMTools SNP 43812 43812 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C32:35 scaffold1895 SAMTools SNP 43956 43956 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 43959 43959 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold1895 SAMTools SNP 44996 44996 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1895 SAMTools SNP 46605 46605 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1895 SAMTools SNP 49832 49832 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.018%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C147:99 scaffold1895 SAMTools SNP 51664 51664 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1895 SAMTools SNP 51969 51969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C16%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1895 SAMTools SNP 52200 52200 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.27%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1895 SAMTools SNP 52329 52329 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1895 SAMTools SNP 55147 55147 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C22%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C219:99 scaffold1895 SAMTools SNP 63360 63360 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.024%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold1895 SAMTools SNP 63771 63771 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1193%3BVDB%3D0.0394%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C10%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.49%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C20:23 scaffold1895 SAMTools SNP 64182 64182 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1883%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C26%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.57%2C8.4e-11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C66:69 scaffold1895 SAMTools SNP 64379 64379 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1895 SAMTools SNP 66842 66842 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1699%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D704%2C171%2C572%2C180%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.034%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold1895 SAMTools SNP 67066 67066 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4245%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1515%2C683%2C945%2C416%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 67414 67414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4616%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C22%2C3495%2C1061%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D2.4e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 69172 69172 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1640%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C458%2C111%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 69586 69586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3049%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C2153%2C858%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.16%2C0.41%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 69616 69616 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3912%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C3250%2C580%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.41%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 72485 72485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C34%2C454%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 72723 72723 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C114%2C0:99 scaffold1895 SAMTools SNP 80590 80590 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold1895 SAMTools SNP 82219 82219 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1895 SAMTools SNP 82252 82252 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C185:99 scaffold1895 SAMTools SNP 82255 82255 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.023%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1895 SAMTools SNP 82259 82259 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.22%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1895 SAMTools SNP 82288 82288 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 82300 82300 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C8%3BMQ%3D30%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C175:57 scaffold1895 SAMTools SNP 82321 82321 117 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.39%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C27%2C125%2C49%2C0%2C148:99 scaffold1895 SAMTools SNP 82330 82330 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1895 SAMTools SNP 82707 82707 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C13%3BMQ%3D46%3BFQ%3D189%3BPV4%3D0.0034%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1895 SAMTools SNP 82788 82788 25.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C5%2C0:9 scaffold1895 SAMTools SNP 83044 83044 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 83540 83540 25.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold1895 SAMTools SNP 87775 87775 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1895 SAMTools SNP 89093 89093 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1895 SAMTools SNP 89518 89518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1895 SAMTools SNP 89557 89557 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C6%2C29%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.45%2C1.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1895 SAMTools SNP 90058 90058 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.019%2C0.00016%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1895 SAMTools SNP 93934 93934 100 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C94%2C85%2C133%2C0%2C127:16 scaffold1895 SAMTools SNP 97690 97690 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1895 SAMTools SNP 97735 97735 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold1895 SAMTools SNP 98594 98594 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.16%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold1895 SAMTools SNP 98603 98603 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold1895 SAMTools SNP 105602 105602 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0098%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold1895 SAMTools SNP 108691 108691 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold1895 SAMTools SNP 108746 108746 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold1895 SAMTools SNP 109389 109389 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1895 SAMTools SNP 110121 110121 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1895 SAMTools SNP 110130 110130 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1895 SAMTools SNP 121359 121359 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1895 SAMTools SNP 126494 126494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1895 SAMTools SNP 126689 126689 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 126731 126731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C44%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 128361 128361 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1895 SAMTools SNP 129054 129054 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1895 SAMTools SNP 129498 129498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 129501 129501 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 129768 129768 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1895 SAMTools SNP 129873 129873 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C3%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C178%2C0:99 scaffold1895 SAMTools SNP 129925 129925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 130980 130980 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.47%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 131561 131561 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1895 SAMTools SNP 131797 131797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1895 SAMTools SNP 131827 131827 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 132157 132157 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0055%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1895 SAMTools SNP 132574 132574 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.47%2C0.015%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1895 SAMTools SNP 137612 137612 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1895 SAMTools SNP 137660 137660 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1895 SAMTools SNP 138315 138315 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1895 SAMTools SNP 144134 144134 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C7%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1895 SAMTools SNP 144179 144179 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1895 SAMTools SNP 144625 144625 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C42%2C0:81 scaffold1895 SAMTools SNP 144832 144832 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C232:65 scaffold1895 SAMTools SNP 146881 146881 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C47%2C9%2C39%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.8%2C2.3e-50%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1895 SAMTools SNP 150835 150835 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C228:90 scaffold1895 SAMTools SNP 150916 150916 19.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1895 SAMTools SNP 150980 150980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1895 SAMTools SNP 151208 151208 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold1895 SAMTools SNP 151376 151376 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C1%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.4%2C0.4%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1895 SAMTools SNP 151394 151394 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1895 SAMTools SNP 151637 151637 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold1895 SAMTools SNP 152189 152189 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1895 SAMTools SNP 152333 152333 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.058%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C235:99 scaffold1895 SAMTools SNP 152340 152340 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold1895 SAMTools SNP 152380 152380 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 154975 154975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1895 SAMTools SNP 154988 154988 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1895 SAMTools SNP 155047 155047 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1895 SAMTools SNP 155542 155542 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0032%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold1895 SAMTools SNP 155546 155546 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1895 SAMTools SNP 155548 155548 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.019%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1895 SAMTools SNP 155607 155607 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1895 SAMTools SNP 156216 156216 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1895 SAMTools SNP 156478 156478 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1895 SAMTools SNP 156509 156509 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.46%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold1895 SAMTools SNP 157612 157612 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.45%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1895 SAMTools SNP 157920 157920 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 158768 158768 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1895 SAMTools SNP 161623 161623 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold1895 SAMTools SNP 163997 163997 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C250:99 scaffold1895 SAMTools SNP 164031 164031 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C39%2C0:75 scaffold1895 SAMTools SNP 164390 164390 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1895 SAMTools SNP 164666 164666 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C16%2C11%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.018%2C1.9e-28%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C118:82 scaffold1895 SAMTools SNP 164747 164747 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C51%2C0:99 scaffold1895 SAMTools SNP 165867 165867 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C2%2C41%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C5.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1895 SAMTools SNP 166547 166547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1895 SAMTools SNP 167177 167177 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 168424 168424 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.55%2C0.0033%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1895 SAMTools SNP 169563 169563 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1895 SAMTools SNP 169665 169665 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1895 SAMTools SNP 170198 170198 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1895 SAMTools SNP 170609 170609 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C0.16%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold1895 SAMTools SNP 170781 170781 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.29%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold1895 SAMTools SNP 170942 170942 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.39%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold1895 SAMTools SNP 170981 170981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold1895 SAMTools SNP 171373 171373 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 172020 172020 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1895 SAMTools SNP 172064 172064 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1895 SAMTools SNP 172836 172836 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold1895 SAMTools SNP 173806 173806 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C42%2C0:81 scaffold1895 SAMTools SNP 175124 175124 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C22:25 scaffold1895 SAMTools SNP 175159 175159 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1895 SAMTools SNP 176402 176402 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1895 SAMTools SNP 176405 176405 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1895 SAMTools SNP 177329 177329 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold1895 SAMTools SNP 177695 177695 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1895 SAMTools SNP 177716 177716 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold1895 SAMTools SNP 178554 178554 23.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold1895 SAMTools SNP 178977 178977 10.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold1895 SAMTools SNP 179053 179053 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1895 SAMTools SNP 179289 179289 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold1895 SAMTools SNP 179681 179681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1895 SAMTools SNP 181637 181637 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1895 SAMTools SNP 181715 181715 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1895 SAMTools SNP 182305 182305 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1895 SAMTools SNP 182749 182749 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1895 SAMTools SNP 182786 182786 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1895 SAMTools SNP 182921 182921 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.37%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold1895 SAMTools SNP 182930 182930 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold1895 SAMTools SNP 183807 183807 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 183925 183925 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1895 SAMTools SNP 184061 184061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1895 SAMTools SNP 184797 184797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 184798 184798 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 186972 186972 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold1895 SAMTools SNP 191448 191448 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold1895 SAMTools SNP 193305 193305 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C217:34 scaffold1895 SAMTools SNP 196835 196835 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1895 SAMTools SNP 200657 200657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1895 SAMTools SNP 201001 201001 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C19%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D2.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold1895 SAMTools SNP 201010 201010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D193%3BPV4%3D2.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1895 SAMTools SNP 201462 201462 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 201633 201633 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C13%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.61%2C0.4%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold1895 SAMTools SNP 202142 202142 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold1895 SAMTools SNP 202171 202171 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1895 SAMTools SNP 203253 203253 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1895 SAMTools SNP 204059 204059 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C254:99 scaffold1895 SAMTools SNP 204092 204092 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1895 SAMTools SNP 205305 205305 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1895 SAMTools SNP 205445 205445 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1895 SAMTools SNP 206406 206406 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1895 SAMTools SNP 207461 207461 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold1895 SAMTools SNP 208481 208481 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold1895 SAMTools SNP 208550 208550 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1895 SAMTools SNP 209530 209530 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C89:43 scaffold1895 SAMTools SNP 214174 214174 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold1895 SAMTools SNP 214225 214225 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.014%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1895 SAMTools SNP 214234 214234 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C0.14%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1895 SAMTools SNP 214446 214446 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C66%2C0:99 scaffold1895 SAMTools SNP 214908 214908 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold1895 SAMTools SNP 220589 220589 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1895 SAMTools SNP 240191 240191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.11%2C0.26%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold1895 SAMTools SNP 240215 240215 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.32%2C0.002%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold1895 SAMTools SNP 240361 240361 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1895 SAMTools SNP 240396 240396 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C193:99 scaffold1895 SAMTools SNP 241228 241228 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1895 SAMTools SNP 241240 241240 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold1895 SAMTools SNP 241818 241818 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold1895 SAMTools SNP 242597 242597 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1895 SAMTools SNP 242605 242605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.00026%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1895 SAMTools SNP 251382 251382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.19%2C9.9e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold1895 SAMTools SNP 251435 251435 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C219:43 scaffold1895 SAMTools SNP 251991 251991 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold1895 SAMTools SNP 253091 253091 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1895 SAMTools SNP 253667 253667 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C33%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C141%2C0:99 scaffold1895 SAMTools SNP 253711 253711 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C107%2C7%2C62%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.22%2C9.9e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1895 SAMTools SNP 254282 254282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C82%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1895 SAMTools SNP 254464 254464 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1895 SAMTools SNP 257611 257611 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1895 SAMTools SNP 262182 262182 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold1896 SAMTools SNP 429 429 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 787 787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold1896 SAMTools SNP 830 830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C33%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1896 SAMTools SNP 1508 1508 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C38%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1896 SAMTools SNP 4026 4026 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 19410 19410 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1896 SAMTools SNP 21212 21212 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1779%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D695%2C508%2C46%2C528%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-100%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 25941 25941 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C185%2C24%2C22%3BMQ%3D50%3BFQ%3D171%3BPV4%3D7.5e-09%2C1%2C1%2C6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1896 SAMTools SNP 26714 26714 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C7%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1896 SAMTools SNP 27134 27134 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0068%2C0.00029%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold1896 SAMTools SNP 27149 27149 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1896 SAMTools SNP 27153 27153 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.19%2C0.037%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1896 SAMTools SNP 27161 27161 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.036%2C1.6e-06%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C177:47 scaffold1896 SAMTools SNP 27998 27998 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D252%2C5%2C168%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 31711 31711 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1896 SAMTools SNP 35137 35137 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1896 SAMTools SNP 36857 36857 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C213:80 scaffold1896 SAMTools SNP 36998 36998 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.53%2C0.038%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold1896 SAMTools SNP 37013 37013 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.63%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1896 SAMTools SNP 37368 37368 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold1896 SAMTools SNP 37421 37421 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.058%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1896 SAMTools SNP 37521 37521 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0:57 scaffold1896 SAMTools SNP 37560 37560 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1896 SAMTools SNP 37750 37750 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.024%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold1896 SAMTools SNP 38068 38068 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C172:99 scaffold1896 SAMTools SNP 38107 38107 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.083%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold1896 SAMTools SNP 40816 40816 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1896 SAMTools SNP 42987 42987 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1896 SAMTools SNP 43074 43074 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C191:88 scaffold1896 SAMTools SNP 43847 43847 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C204:99 scaffold1896 SAMTools SNP 44036 44036 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1896 SAMTools SNP 44388 44388 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1896 SAMTools SNP 44427 44427 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 47050 47050 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold1896 SAMTools SNP 47110 47110 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C245%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 55963 55963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 55996 55996 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C41%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 56405 56405 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 58032 58032 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C20%2C40%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 60840 60840 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C32%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 62214 62214 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C15%2C205%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0062%2C0.00026%2C1%2C7.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold1896 SAMTools SNP 62233 62233 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C239%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 62555 62555 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C62%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 62567 62567 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C66%2C21%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.35%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 62869 62869 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C12%2C18%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.094%2C6.7e-58%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold1896 SAMTools SNP 62923 62923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C38%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold1896 SAMTools SNP 63796 63796 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C27%2C46%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 63829 63829 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C11%2C43%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 63859 63859 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C13%2C25%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.52%2C1%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold1896 SAMTools SNP 63893 63893 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C76%2C57%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C2.7e-10%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 63911 63911 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C77%2C41%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 63929 63929 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C78%2C94%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C0.0042%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 64874 64874 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold1896 SAMTools SNP 65457 65457 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C130%2C1%2C58%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1896 SAMTools SNP 65883 65883 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C83%2C0%2C30%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.00062%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1896 SAMTools SNP 65953 65953 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C0%2C20%3BMQ%3D50%3BFQ%3D70%3BPV4%3D9.3e-05%2C9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold1896 SAMTools SNP 66006 66006 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C27%2C9%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1896 SAMTools SNP 66437 66437 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold1896 SAMTools SNP 66488 66488 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1896 SAMTools SNP 66532 66532 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C14%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C1%2C1%2C8.3e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold1896 SAMTools SNP 66829 66829 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C17%2C16%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.018%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1896 SAMTools SNP 66912 66912 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C29%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold1896 SAMTools SNP 67320 67320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C53%2C40%3BMQ%3D50%3BFQ%3D218%3BPV4%3D3.5e-11%2C7.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1896 SAMTools SNP 68199 68199 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C152%2C81%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 68720 68720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C64%2C1%2C69%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00037%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 69136 69136 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C72%2C25%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C0.13%2C0.35%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 69184 69184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C65%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 69199 69199 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C22%2C15%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.4%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 69985 69985 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C34%2C30%2C12%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.43%2C1%2C0.33%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 70191 70191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C22%2C52%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 70470 70470 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C50%2C133%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 71278 71278 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 75714 75714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 75930 75930 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 76109 76109 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 76378 76378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1896 SAMTools SNP 76421 76421 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.58%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1896 SAMTools SNP 76435 76435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 76666 76666 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1896 SAMTools SNP 77009 77009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 77051 77051 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C21%2C88%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 77452 77452 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C135%2C13%2C22%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.71%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1896 SAMTools SNP 77461 77461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C140%2C32%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C9.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 78485 78485 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.0005%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold1896 SAMTools SNP 79644 79644 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 80736 80736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C241%2C63%2C215%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 80805 80805 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D525%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C72%2C121%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 82092 82092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C128%2C40%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 83250 83250 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C52%2C44%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-06%2C1%2C1%2C6.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 83307 83307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C134%2C8%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 83358 83358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C117%2C62%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 83541 83541 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C16%2C43%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 84524 84524 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D178%2C3%2C109%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1e-201%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold1896 SAMTools SNP 84591 84591 103 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D463%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C105%2C0:99 scaffold1896 SAMTools SNP 85585 85585 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C90%2C0:99 scaffold1896 SAMTools SNP 85760 85760 32.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold1896 SAMTools SNP 165716 165716 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C13%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C13%2C0:23 scaffold1896 SAMTools SNP 165767 165767 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1896 SAMTools SNP 166515 166515 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C21%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1896 SAMTools SNP 166806 166806 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1896 SAMTools SNP 167321 167321 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1896 SAMTools SNP 168283 168283 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1896 SAMTools SNP 169622 169622 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold1896 SAMTools SNP 169649 169649 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold1896 SAMTools SNP 172120 172120 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold1896 SAMTools SNP 172462 172462 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C96%2C0:99 scaffold1896 SAMTools SNP 172936 172936 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 173345 173345 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1896 SAMTools SNP 173360 173360 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.62%3BPV4%3D1%2C2.4e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C35:38 scaffold1896 SAMTools SNP 173399 173399 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1896 SAMTools SNP 174059 174059 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1896 SAMTools SNP 183286 183286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C8%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 185672 185672 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1896 SAMTools SNP 185696 185696 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 186705 186705 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 188433 188433 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.032%2C0.0058%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1896 SAMTools SNP 200627 200627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1896 SAMTools SNP 202838 202838 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1896 SAMTools SNP 203738 203738 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C132:60 scaffold1896 SAMTools SNP 203800 203800 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1896 SAMTools SNP 205488 205488 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C21%2C0:39 scaffold1896 SAMTools SNP 205503 205503 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold1896 SAMTools SNP 205528 205528 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.48%2C0.0092%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1896 SAMTools SNP 208791 208791 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C236:99 scaffold1896 SAMTools SNP 208818 208818 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold1896 SAMTools SNP 231758 231758 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C151:37 scaffold1896 SAMTools SNP 233608 233608 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C177:71 scaffold1896 SAMTools SNP 254258 254258 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1896 SAMTools SNP 254262 254262 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1896 SAMTools SNP 260941 260941 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C2%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold1896 SAMTools SNP 275721 275721 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1896 SAMTools SNP 276153 276153 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1896 SAMTools SNP 276764 276764 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C64%2C4%2C17%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1896 SAMTools SNP 278461 278461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 278488 278488 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C17%2C5%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.12%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1896 SAMTools SNP 280297 280297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 280733 280733 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1896 SAMTools SNP 282073 282073 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C71%2C56%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1.6e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1896 SAMTools SNP 282719 282719 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D772%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C280%2C85%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C8.5e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 284557 284557 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1896 SAMTools SNP 285109 285109 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D872%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D248%2C101%2C354%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 285340 285340 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C86%2C0%2C56%3BMQ%3D50%3BFQ%3D57%3BPV4%3D8e-08%2C1%2C1%2C8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold1896 SAMTools SNP 286507 286507 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold1896 SAMTools SNP 287280 287280 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1896 SAMTools SNP 291019 291019 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold1896 SAMTools SNP 291023 291023 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 300071 300071 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1896 SAMTools SNP 300086 300086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 302916 302916 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 302964 302964 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C64%2C12%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 302985 302985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C47%2C23%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 303391 303391 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold1896 SAMTools SNP 305228 305228 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.56%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1896 SAMTools SNP 305472 305472 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C9%2C108%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.019%2C1.3e-156%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold1896 SAMTools SNP 305757 305757 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C45%2C0:87 scaffold1896 SAMTools SNP 306148 306148 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.17%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C22:25 scaffold1896 SAMTools SNP 306967 306967 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D36%3BPV4%3D2.6e-07%2C6.7e-14%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1896 SAMTools SNP 307114 307114 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C50%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.00039%2C8.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold1896 SAMTools SNP 307590 307590 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C30%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C138%2C0:99 scaffold1896 SAMTools SNP 308263 308263 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C62%2C46%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1.1e-37%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 308346 308346 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C31%2C0%2C11%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.097%2C5.9e-09%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1896 SAMTools SNP 308442 308442 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C36%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.52%2C2.9e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold1896 SAMTools SNP 308805 308805 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.31%2C3.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold1896 SAMTools SNP 310058 310058 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C2%2C27%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.69%2C1.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1896 SAMTools SNP 315689 315689 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C16%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.17%2C3.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold1896 SAMTools SNP 316308 316308 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 316752 316752 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.46%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold1896 SAMTools SNP 316818 316818 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold1896 SAMTools SNP 317177 317177 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1896 SAMTools SNP 317204 317204 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 317285 317285 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1896 SAMTools SNP 317291 317291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1896 SAMTools SNP 317754 317754 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C138%2C0:99 scaffold1896 SAMTools SNP 317823 317823 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C23%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.79%2C1.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1896 SAMTools SNP 318047 318047 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C20%2C6%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.23%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1896 SAMTools SNP 318089 318089 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 329710 329710 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 329720 329720 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.54%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold1896 SAMTools SNP 331369 331369 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C182:99 scaffold1896 SAMTools SNP 334523 334523 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold1896 SAMTools SNP 334684 334684 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C42%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.36%2C1.5e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold1896 SAMTools SNP 334798 334798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 334909 334909 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold1896 SAMTools SNP 334951 334951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C22%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.2e-05%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 335306 335306 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D64%2C18%2C2%2C9%3BMQ%3D49%3BFQ%3D5.47%3BPV4%3D0.00017%2C1%2C2.9e-05%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold1896 SAMTools SNP 335360 335360 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C14%3BMQ%3D49%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold1896 SAMTools SNP 335909 335909 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1896 SAMTools SNP 335963 335963 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D4.1e-05%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C189:99 scaffold1896 SAMTools SNP 337788 337788 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C12%2C30%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C0.0027%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 339129 339129 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1896 SAMTools SNP 340144 340144 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C251%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 340277 340277 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D202%2C41%2C182%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 340655 340655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C194%2C0%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.28%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 340708 340708 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold1896 SAMTools SNP 340774 340774 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C123%2C0:99 scaffold1896 SAMTools SNP 341093 341093 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C15%2C0:27 scaffold1896 SAMTools SNP 341690 341690 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C0.027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C80:41 scaffold1896 SAMTools SNP 348631 348631 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C48%2C0:78 scaffold1896 SAMTools SNP 348870 348870 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1896 SAMTools SNP 349254 349254 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1896 SAMTools SNP 350555 350555 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1896 SAMTools SNP 350564 350564 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1896 SAMTools SNP 374724 374724 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1896 SAMTools SNP 374760 374760 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1896 SAMTools SNP 374784 374784 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 375762 375762 30.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold1896 SAMTools SNP 389969 389969 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1896 SAMTools SNP 392212 392212 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold1896 SAMTools SNP 392213 392213 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold1896 SAMTools SNP 392230 392230 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C18:21 scaffold1896 SAMTools SNP 393436 393436 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1896 SAMTools SNP 393466 393466 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1896 SAMTools SNP 393478 393478 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold1896 SAMTools SNP 394083 394083 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold1896 SAMTools SNP 394449 394449 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1896 SAMTools SNP 399402 399402 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1896 SAMTools SNP 402819 402819 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 402826 402826 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 402997 402997 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 449746 449746 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C20:23 scaffold1896 SAMTools SNP 452100 452100 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold1896 SAMTools SNP 454723 454723 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1896 SAMTools SNP 454744 454744 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold1896 SAMTools SNP 454762 454762 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 455651 455651 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1896 SAMTools SNP 493698 493698 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1896 SAMTools SNP 495914 495914 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C21%2C48%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D1%2C9.3e-36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C158%2C0:99 scaffold1896 SAMTools SNP 496269 496269 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C300%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 497329 497329 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1896 SAMTools SNP 497427 497427 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C8.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C187:99 scaffold1896 SAMTools SNP 497562 497562 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold1896 SAMTools SNP 497899 497899 44.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold1896 SAMTools SNP 498918 498918 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C10%2C48%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.015%2C0.00038%2C1%2C9.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold1896 SAMTools SNP 498989 498989 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C38%2C35%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D5e-07%2C1%2C1%2C4.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold1896 SAMTools SNP 499537 499537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C26%2C51%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 499594 499594 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C41%2C16%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D1%2C6.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C83%2C0:99 scaffold1896 SAMTools SNP 499597 499597 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C11%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C3.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 499633 499633 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C57%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C0.26%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 499639 499639 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 500033 500033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 500048 500048 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C0%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold1896 SAMTools SNP 500629 500629 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C30%2C30%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C2.6e-09%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 500641 500641 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C30%2C22%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.026%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold1896 SAMTools SNP 501160 501160 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C17%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 501541 501541 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C14%2C18%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.19%2C7.7e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold1896 SAMTools SNP 501598 501598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1896 SAMTools SNP 501622 501622 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.56%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1896 SAMTools SNP 502006 502006 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.3%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1896 SAMTools SNP 502462 502462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 502763 502763 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.009%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 503754 503754 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D570%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C499%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.23%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 506783 506783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D201%2C4%2C82%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C5.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 507389 507389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C39%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold1896 SAMTools SNP 507398 507398 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.2%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold1896 SAMTools SNP 510976 510976 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C40%2C111%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.074%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 511656 511656 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C32%2C10%2C11%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.46%2C4.1e-07%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold1896 SAMTools SNP 511670 511670 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C37%2C21%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.82%2C0.0091%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1896 SAMTools SNP 520027 520027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 523226 523226 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C4%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.75%2C0.0097%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold1896 SAMTools SNP 523235 523235 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1896 SAMTools SNP 523262 523262 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 523617 523617 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 523845 523845 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.018%2C1%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold1896 SAMTools SNP 524894 524894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C67%2C78%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00047%2C0.00056%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 524942 524942 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C95%2C47%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 525395 525395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C87%2C34%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C0.025%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 525835 525835 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1896 SAMTools SNP 525871 525871 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C71%2C1%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C8.4e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 526287 526287 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C246:99 scaffold1896 SAMTools SNP 533221 533221 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1896 SAMTools SNP 533341 533341 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1896 SAMTools SNP 545628 545628 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.41%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold1896 SAMTools SNP 546533 546533 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold1896 SAMTools SNP 552470 552470 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold1896 SAMTools SNP 568189 568189 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold1896 SAMTools SNP 568400 568400 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C63:44 scaffold1896 SAMTools SNP 573866 573866 75.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold1896 SAMTools SNP 573868 573868 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C94:36 scaffold1896 SAMTools SNP 575927 575927 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1896 SAMTools SNP 578581 578581 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold1896 SAMTools SNP 578670 578670 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1896 SAMTools SNP 579436 579436 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold1896 SAMTools SNP 581685 581685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C50%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 582310 582310 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1896 SAMTools SNP 582322 582322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.00099%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1896 SAMTools SNP 582334 582334 186 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C26%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1896 SAMTools SNP 583461 583461 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.076%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1896 SAMTools SNP 583491 583491 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold1896 SAMTools SNP 583942 583942 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.6%2C0.21%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold1896 SAMTools SNP 583954 583954 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1896 SAMTools SNP 583966 583966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold1896 SAMTools SNP 583975 583975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1896 SAMTools SNP 584644 584644 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1896 SAMTools SNP 585024 585024 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1896 SAMTools SNP 585060 585060 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1896 SAMTools SNP 586537 586537 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1896 SAMTools SNP 587106 587106 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1896 SAMTools SNP 587187 587187 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold1896 SAMTools SNP 587196 587196 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold1896 SAMTools SNP 587658 587658 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C8.2e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C82:85 scaffold1896 SAMTools SNP 595865 595865 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 596138 596138 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1896 SAMTools SNP 596452 596452 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold1896 SAMTools SNP 596453 596453 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 3551 3551 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 3625 3625 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 4536 4536 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold1897 SAMTools SNP 14110 14110 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D56.7%3BPV4%3D1%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C96:87 scaffold1897 SAMTools SNP 14437 14437 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold1897 SAMTools SNP 16439 16439 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold1897 SAMTools SNP 16535 16535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1897 SAMTools SNP 17493 17493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 17544 17544 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1897 SAMTools SNP 18078 18078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1897 SAMTools SNP 18823 18823 8.22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold1897 SAMTools SNP 20753 20753 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold1897 SAMTools SNP 31586 31586 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1897 SAMTools SNP 51757 51757 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 52047 52047 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1897 SAMTools SNP 53887 53887 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 60199 60199 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1897 SAMTools SNP 60842 60842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1897 SAMTools SNP 69804 69804 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C18%2C0:33 scaffold1897 SAMTools SNP 70194 70194 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1897 SAMTools SNP 73561 73561 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1897 SAMTools SNP 99406 99406 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 99412 99412 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 99518 99518 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1897 SAMTools SNP 101421 101421 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 108376 108376 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1897 SAMTools SNP 109101 109101 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.23%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1897 SAMTools SNP 111270 111270 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 112039 112039 163 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C47%2C32%2C189%2C0%2C186:27 scaffold1897 SAMTools SNP 112288 112288 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold1897 SAMTools SNP 114531 114531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1897 SAMTools SNP 114551 114551 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1897 SAMTools SNP 117198 117198 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1897 SAMTools SNP 117279 117279 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C75%2C0:99 scaffold1897 SAMTools SNP 120004 120004 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.35%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 120118 120118 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1897 SAMTools SNP 121671 121671 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1897 SAMTools SNP 124391 124391 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1897 SAMTools SNP 125840 125840 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 126867 126867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C81%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1897 SAMTools SNP 126894 126894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1897 SAMTools SNP 126921 126921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 126924 126924 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.44%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold1897 SAMTools SNP 126954 126954 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C2%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1897 SAMTools SNP 127282 127282 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C269%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 127877 127877 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 128240 128240 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold1897 SAMTools SNP 128275 128275 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C33%2C0:62 scaffold1897 SAMTools SNP 129158 129158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C158%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 129515 129515 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 130096 130096 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C6%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold1897 SAMTools SNP 130230 130230 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C174%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 132138 132138 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C106%2C50%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.18%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 132216 132216 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C242%2C7%2C199%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.8e-125%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 135325 135325 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold1897 SAMTools SNP 135409 135409 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1897 SAMTools SNP 136092 136092 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.39%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C236:99 scaffold1897 SAMTools SNP 136099 136099 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1897 SAMTools SNP 136734 136734 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold1897 SAMTools SNP 138858 138858 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1897 SAMTools SNP 138894 138894 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 138921 138921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1897 SAMTools SNP 139076 139076 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1897 SAMTools SNP 139115 139115 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.029%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1897 SAMTools SNP 140812 140812 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1897 SAMTools SNP 141233 141233 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1897 SAMTools SNP 141308 141308 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1897 SAMTools SNP 141323 141323 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold1897 SAMTools SNP 143390 143390 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1897 SAMTools SNP 144367 144367 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C30%2C0:57 scaffold1897 SAMTools SNP 144812 144812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1897 SAMTools SNP 144824 144824 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1897 SAMTools SNP 145466 145466 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1897 SAMTools SNP 145484 145484 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 145547 145547 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1897 SAMTools SNP 147234 147234 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.54%2C6.7e-41%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C212:92 scaffold1897 SAMTools SNP 147247 147247 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.54%2C5.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold1897 SAMTools SNP 147329 147329 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1897 SAMTools SNP 148413 148413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 148433 148433 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1897 SAMTools SNP 148767 148767 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 148896 148896 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1897 SAMTools SNP 149227 149227 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 149305 149305 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold1897 SAMTools SNP 149929 149929 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1897 SAMTools SNP 149967 149967 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1897 SAMTools SNP 150124 150124 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 150151 150151 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1897 SAMTools SNP 150515 150515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 150562 150562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold1897 SAMTools SNP 150569 150569 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.39%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold1897 SAMTools SNP 150912 150912 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C66%2C0:99 scaffold1897 SAMTools SNP 151208 151208 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1897 SAMTools SNP 151537 151537 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1897 SAMTools SNP 151543 151543 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.005%2C0.2%2C1%2C4.5e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C119:99 scaffold1897 SAMTools SNP 151555 151555 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1897 SAMTools SNP 151557 151557 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold1897 SAMTools SNP 152337 152337 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1897 SAMTools SNP 152420 152420 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1897 SAMTools SNP 152776 152776 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C6%3BMQ%3D47%3BFQ%3D130%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1897 SAMTools SNP 152788 152788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C19%3BMQ%3D48%3BFQ%3D47%3BPV4%3D0.55%2C0.13%2C0.29%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold1897 SAMTools SNP 153611 153611 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D48%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1897 SAMTools SNP 153625 153625 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C0%3BMQ%3D48%3BFQ%3D99%3BPV4%3D0.14%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1897 SAMTools SNP 153644 153644 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C21%2C6%3BMQ%3D49%3BFQ%3D110%3BPV4%3D0.31%2C0.34%2C0.24%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold1897 SAMTools SNP 154239 154239 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.18%2C0.013%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1897 SAMTools SNP 155186 155186 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1897 SAMTools SNP 155373 155373 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1897 SAMTools SNP 155696 155696 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0017%2C0.00018%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1897 SAMTools SNP 157119 157119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C33%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1897 SAMTools SNP 157677 157677 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C38%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold1897 SAMTools SNP 157693 157693 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C10%2C7%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1897 SAMTools SNP 158465 158465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1897 SAMTools SNP 158911 158911 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1897 SAMTools SNP 158951 158951 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1897 SAMTools SNP 160202 160202 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 160203 160203 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 162134 162134 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold1897 SAMTools SNP 162196 162196 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1897 SAMTools SNP 162227 162227 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold1897 SAMTools SNP 162442 162442 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 162565 162565 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1897 SAMTools SNP 162577 162577 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1897 SAMTools SNP 162586 162586 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1897 SAMTools SNP 163166 163166 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1897 SAMTools SNP 163485 163485 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.051%2C0.11%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C216:99 scaffold1897 SAMTools SNP 163494 163494 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold1897 SAMTools SNP 163539 163539 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold1897 SAMTools SNP 163560 163560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1897 SAMTools SNP 163780 163780 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1897 SAMTools SNP 164253 164253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 164520 164520 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1897 SAMTools SNP 169842 169842 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 170367 170367 51.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold1897 SAMTools SNP 170522 170522 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 170715 170715 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold1897 SAMTools SNP 172325 172325 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 174166 174166 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C20%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.29%2C7.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1897 SAMTools SNP 174349 174349 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C30%2C0:57 scaffold1897 SAMTools SNP 175707 175707 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C36%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold1897 SAMTools SNP 175773 175773 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 176318 176318 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold1897 SAMTools SNP 176361 176361 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1897 SAMTools SNP 176379 176379 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C239:99 scaffold1897 SAMTools SNP 176433 176433 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 176764 176764 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1897 SAMTools SNP 177410 177410 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1897 SAMTools SNP 177621 177621 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1897 SAMTools SNP 178329 178329 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1897 SAMTools SNP 179370 179370 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1897 SAMTools SNP 179421 179421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 181251 181251 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C91%2C7%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 181987 181987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C38%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 182215 182215 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 182227 182227 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C24%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 182841 182841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 182987 182987 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C60%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold1897 SAMTools SNP 183032 183032 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1897 SAMTools SNP 184312 184312 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 184344 184344 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 186413 186413 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1897 SAMTools SNP 186925 186925 13.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold1897 SAMTools SNP 188720 188720 19.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold1897 SAMTools SNP 188971 188971 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C123%2C0:99 scaffold1897 SAMTools SNP 190581 190581 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1897 SAMTools SNP 190614 190614 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1897 SAMTools SNP 190615 190615 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold1897 SAMTools SNP 190618 190618 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold1897 SAMTools SNP 191065 191065 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold1897 SAMTools SNP 191214 191214 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 192731 192731 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.24%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold1897 SAMTools SNP 192757 192757 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C0.36%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1897 SAMTools SNP 192758 192758 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1897 SAMTools SNP 193530 193530 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1897 SAMTools SNP 193548 193548 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D22%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.56%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1897 SAMTools SNP 194635 194635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold1897 SAMTools SNP 195902 195902 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold1897 SAMTools SNP 198324 198324 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold1897 SAMTools SNP 198402 198402 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D0.25%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C38:41 scaffold1897 SAMTools SNP 203168 203168 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D4.93%3BPV4%3D0.4%2C1.3e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C35:31 scaffold1897 SAMTools SNP 203264 203264 17.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold1897 SAMTools SNP 207937 207937 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 207942 207942 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 211031 211031 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 211032 211032 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1897 SAMTools SNP 212301 212301 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C21%2C0:39 scaffold1897 SAMTools SNP 212370 212370 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold1897 SAMTools SNP 212384 212384 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.057%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1897 SAMTools SNP 213629 213629 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold1897 SAMTools SNP 214115 214115 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold1897 SAMTools SNP 216216 216216 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold1897 SAMTools SNP 216833 216833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1897 SAMTools SNP 218488 218488 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold1897 SAMTools SNP 219248 219248 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.23%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C104:99 scaffold1897 SAMTools SNP 219335 219335 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.54%2C1.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1897 SAMTools SNP 219356 219356 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1897 SAMTools SNP 220502 220502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 226974 226974 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1897 SAMTools SNP 227312 227312 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1897 SAMTools SNP 227913 227913 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1897 SAMTools SNP 228094 228094 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.046%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C243:62 scaffold1897 SAMTools SNP 229485 229485 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 229499 229499 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1897 SAMTools SNP 229511 229511 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1897 SAMTools SNP 230227 230227 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.54%2C0.0011%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1897 SAMTools SNP 233332 233332 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1897 SAMTools SNP 235340 235340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1897 SAMTools SNP 235361 235361 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 235559 235559 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00075%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C230:47 scaffold1897 SAMTools SNP 238662 238662 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1897 SAMTools SNP 238698 238698 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C170:99 scaffold1897 SAMTools SNP 244258 244258 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 249680 249680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1897 SAMTools SNP 255472 255472 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C42%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.046%2C6.9e-29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold1897 SAMTools SNP 272884 272884 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1897 SAMTools SNP 273194 273194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1897 SAMTools SNP 276411 276411 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 278149 278149 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1897 SAMTools SNP 278499 278499 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold1897 SAMTools SNP 280497 280497 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1897 SAMTools SNP 289418 289418 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.5%2C0.38%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C221:71 scaffold1897 SAMTools SNP 289422 289422 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.17%2C0.14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C229:99 scaffold1897 SAMTools SNP 290965 290965 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold1897 SAMTools SNP 291000 291000 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1897 SAMTools SNP 291001 291001 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold1897 SAMTools SNP 294213 294213 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C38:41 scaffold1897 SAMTools SNP 294528 294528 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.11%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C118:52 scaffold1897 SAMTools SNP 295229 295229 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.089%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1897 SAMTools SNP 299272 299272 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C65:68 scaffold1897 SAMTools SNP 304163 304163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C7%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 304208 304208 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C13%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold1897 SAMTools SNP 304238 304238 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C5%2C61%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 308550 308550 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.19%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold1897 SAMTools SNP 320793 320793 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 326370 326370 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D646%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D315%2C3%2C324%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.12%2C2.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold1897 SAMTools SNP 326651 326651 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.63%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold1897 SAMTools SNP 327090 327090 196 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C3%2C212%2C0%2C209:51 scaffold1897 SAMTools SNP 327093 327093 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1897 SAMTools SNP 327145 327145 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C84%2C0:99 scaffold1897 SAMTools SNP 327204 327204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1897 SAMTools SNP 327243 327243 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1897 SAMTools SNP 327700 327700 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1897 SAMTools SNP 327706 327706 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1897 SAMTools SNP 327793 327793 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 327805 327805 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1897 SAMTools SNP 328200 328200 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C1%2C49%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C5.2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold1897 SAMTools SNP 328312 328312 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C36%2C0:69 scaffold1897 SAMTools SNP 328372 328372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C20%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 329148 329148 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C48%2C35%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 329653 329653 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C4%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.086%2C0.00011%2C1%2C5.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold1897 SAMTools SNP 330120 330120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 330135 330135 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C4%2C12%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold1897 SAMTools SNP 330219 330219 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.69%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold1897 SAMTools SNP 330629 330629 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C25%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 330665 330665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C15%2C100%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C2.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 330689 330689 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C25%2C24%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 330699 330699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1897 SAMTools SNP 331849 331849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 332219 332219 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.64%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold1897 SAMTools SNP 332298 332298 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D6.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold1897 SAMTools SNP 332574 332574 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C38%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1897 SAMTools SNP 332607 332607 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C20%2C4%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1897 SAMTools SNP 332766 332766 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C28%2C125%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 333208 333208 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C195%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 334884 334884 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C37:37 scaffold1897 SAMTools SNP 343352 343352 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 343484 343484 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 344325 344325 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1897 SAMTools SNP 346366 346366 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 346368 346368 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 346771 346771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 346783 346783 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 383517 383517 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1897 SAMTools SNP 386967 386967 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1897 SAMTools SNP 386968 386968 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1897 SAMTools SNP 387304 387304 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1897 SAMTools SNP 387476 387476 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1897 SAMTools SNP 424883 424883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1897 SAMTools SNP 425174 425174 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C63%2C0:99 scaffold1897 SAMTools SNP 425604 425604 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.011%2C2.3e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold1897 SAMTools SNP 425806 425806 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C36%2C0:69 scaffold1897 SAMTools SNP 425899 425899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 430716 430716 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold1897 SAMTools SNP 430737 430737 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold1897 SAMTools SNP 451527 451527 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C33%2C0:63 scaffold1897 SAMTools SNP 452303 452303 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.58%2C0.32%2C1%2C6.5e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C244:99 scaffold1897 SAMTools SNP 452857 452857 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C4.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1897 SAMTools SNP 452858 452858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1897 SAMTools SNP 455564 455564 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 455583 455583 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 461881 461881 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold1897 SAMTools SNP 462068 462068 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.049%2C7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold1897 SAMTools SNP 462121 462121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C98%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.33%2C1%2C1%2C4.5e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold1897 SAMTools SNP 462145 462145 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 462511 462511 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C57%2C61%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 462991 462991 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C95%2C80%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 463376 463376 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C14%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.08%2C2.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold1897 SAMTools SNP 464342 464342 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C18%2C38%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 464393 464393 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C51%2C38%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.7e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 464499 464499 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C79%2C12%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D3.3e-12%2C0.06%2C1%2C6e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold1897 SAMTools SNP 466428 466428 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 466521 466521 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C52%2C10%2C31%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.16%2C9.6e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1897 SAMTools SNP 467628 467628 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C5%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 471983 471983 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C5%2C36%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 474087 474087 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 474140 474140 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C9%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.72%2C1.4e-09%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold1897 SAMTools SNP 477384 477384 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 477393 477393 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.082%2C9.3e-06%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold1897 SAMTools SNP 480139 480139 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C6%2C18%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.67%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold1897 SAMTools SNP 480963 480963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C43%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.0039%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 480972 480972 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C40%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 486492 486492 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C67%2C22%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 486824 486824 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C57%2C0:99 scaffold1897 SAMTools SNP 488195 488195 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C69%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold1897 SAMTools SNP 489747 489747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 490036 490036 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.092%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 491525 491525 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 491543 491543 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1897 SAMTools SNP 491614 491614 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C6%2C4%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1897 SAMTools SNP 492794 492794 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 492822 492822 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1897 SAMTools SNP 498481 498481 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1897 SAMTools SNP 499722 499722 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1897 SAMTools SNP 500432 500432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1897 SAMTools SNP 501191 501191 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.22%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1897 SAMTools SNP 502762 502762 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1897 SAMTools SNP 502765 502765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1897 SAMTools SNP 502801 502801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C39%2C3%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D0.011%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1897 SAMTools SNP 504477 504477 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.3%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold1897 SAMTools SNP 527166 527166 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold1897 SAMTools SNP 547038 547038 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C2%2C27%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C4.7e-59%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold1897 SAMTools SNP 555526 555526 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold1897 SAMTools SNP 563093 563093 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1897 SAMTools SNP 563291 563291 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D934%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C724%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 563315 563315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1031%3BVDB%3D0.0141%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D87%2C37%2C160%2C746%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D7.2e-32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C13:16 scaffold1897 SAMTools SNP 564310 564310 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1075%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D179%2C718%2C88%2C65%3BMQ%3D50%3BFQ%3D96%3BPV4%3D2.7e-20%2C1%2C1%2C7.3e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold1897 SAMTools SNP 564367 564367 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D418%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C79%2C18%2C40%3BMQ%3D50%3BFQ%3D215%3BPV4%3D9.4e-07%2C1%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold1897 SAMTools SNP 564718 564718 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1444%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C289%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 564905 564905 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1040%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D48%2C33%2C28%2C767%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D2.3e-37%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold1897 SAMTools SNP 565334 565334 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1897 SAMTools SNP 565337 565337 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C0%3BMQ%3D50%3BFQ%3D-96%3BPV4%3D0.029%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1897 SAMTools SNP 565363 565363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C17%2C32%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 565371 565371 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C98%2C126%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-14%2C1%2C1%2C3.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 567118 567118 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold1897 SAMTools SNP 569685 569685 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2726%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2465%2C255%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 571564 571564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold1897 SAMTools SNP 571600 571600 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1897 SAMTools SNP 571604 571604 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold1897 SAMTools SNP 571632 571632 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2321%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C518%2C1638%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 596890 596890 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C45%2C0:87 scaffold1897 SAMTools SNP 597088 597088 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1897 SAMTools SNP 614295 614295 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1897 SAMTools SNP 614658 614658 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1897 SAMTools SNP 614876 614876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1897 SAMTools SNP 614879 614879 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C238:99 scaffold1897 SAMTools SNP 614930 614930 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1897 SAMTools SNP 615439 615439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 615575 615575 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1897 SAMTools SNP 616282 616282 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 616658 616658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 616715 616715 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold1897 SAMTools SNP 617166 617166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1897 SAMTools SNP 617196 617196 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold1897 SAMTools SNP 617202 617202 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1897 SAMTools SNP 617214 617214 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C231:99 scaffold1897 SAMTools SNP 617631 617631 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C19%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C157:99 scaffold1897 SAMTools SNP 617709 617709 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.36%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C205:77 scaffold1897 SAMTools SNP 617766 617766 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C0%2C198%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 618649 618649 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 618667 618667 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1897 SAMTools SNP 620093 620093 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C12%2C50%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1897 SAMTools SNP 620105 620105 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C31%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold1897 SAMTools SNP 622978 622978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1897 SAMTools SNP 625381 625381 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold1897 SAMTools SNP 625420 625420 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.54%2C0.085%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C209:99 scaffold1897 SAMTools SNP 625461 625461 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.26%2C0.014%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold1897 SAMTools SNP 627100 627100 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 627115 627115 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 627199 627199 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold1897 SAMTools SNP 627210 627210 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1897 SAMTools SNP 627691 627691 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C0.15%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C129:99 scaffold1897 SAMTools SNP 639839 639839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1897 SAMTools SNP 640098 640098 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold1897 SAMTools SNP 640159 640159 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1897 SAMTools SNP 640331 640331 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1897 SAMTools SNP 640440 640440 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold1898 SAMTools SNP 2663 2663 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold1898 SAMTools SNP 3637 3637 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1898 SAMTools SNP 15846 15846 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C0%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold1898 SAMTools SNP 15994 15994 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C47%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C6.1e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C210:34 scaffold1898 SAMTools SNP 17142 17142 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C33%2C0:63 scaffold1898 SAMTools SNP 17151 17151 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1898 SAMTools SNP 17428 17428 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C54%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1898 SAMTools SNP 17488 17488 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C47%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.053%2C2.9e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1898 SAMTools SNP 17925 17925 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.057%2C0.093%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold1898 SAMTools SNP 17931 17931 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.015%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold1898 SAMTools SNP 17958 17958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.022%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold1898 SAMTools SNP 17973 17973 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 18448 18448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 18496 18496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D48%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1898 SAMTools SNP 18733 18733 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C11%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.54%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 19155 19155 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C23%3BMQ%3D48%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold1898 SAMTools SNP 19170 19170 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C32%3BMQ%3D47%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold1898 SAMTools SNP 22623 22623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1898 SAMTools SNP 22637 22637 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.65%2C0.042%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold1898 SAMTools SNP 22683 22683 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C13%2C8%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.44%2C3.3e-31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1898 SAMTools SNP 24023 24023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C111%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 24756 24756 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C51%2C47%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 25224 25224 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C54%2C15%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.3%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 29748 29748 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.45%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold1898 SAMTools SNP 29772 29772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1898 SAMTools SNP 42167 42167 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C24%2C0:45 scaffold1898 SAMTools SNP 42536 42536 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1898 SAMTools SNP 42632 42632 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1898 SAMTools SNP 42659 42659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1898 SAMTools SNP 43243 43243 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1898 SAMTools SNP 44695 44695 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.00071%2C0.46%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold1898 SAMTools SNP 44705 44705 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C209:60 scaffold1898 SAMTools SNP 44710 44710 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C106:99 scaffold1898 SAMTools SNP 44733 44733 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold1898 SAMTools SNP 44759 44759 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C6.2e-05%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C107:58 scaffold1898 SAMTools SNP 47390 47390 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C44%2C0%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-07%2C0.052%2C1%2C3.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 48334 48334 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1898 SAMTools SNP 49562 49562 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold1898 SAMTools SNP 49593 49593 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 50140 50140 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C227:99 scaffold1898 SAMTools SNP 50197 50197 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.23%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold1898 SAMTools SNP 50839 50839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 51909 51909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C31%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1898 SAMTools SNP 52239 52239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C37%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold1898 SAMTools SNP 52774 52774 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 54020 54020 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.49%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 54077 54077 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C4.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 54134 54134 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C7%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0033%2C7e-18%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1898 SAMTools SNP 54173 54173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1898 SAMTools SNP 54185 54185 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 54581 54581 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.14%2C0.01%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold1898 SAMTools SNP 54608 54608 31.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C47%2C41%2C62%2C0%2C58:10 scaffold1898 SAMTools SNP 54999 54999 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1898 SAMTools SNP 55031 55031 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 55711 55711 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C69%2C0:99 scaffold1898 SAMTools SNP 66257 66257 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C24%2C23%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.61%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold1898 SAMTools SNP 67005 67005 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C67%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold1898 SAMTools SNP 67029 67029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C123%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 67035 67035 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0004%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C21:24 scaffold1898 SAMTools SNP 67125 67125 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold1898 SAMTools SNP 67916 67916 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42.6%3BPV4%3D0.33%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C70:73 scaffold1898 SAMTools SNP 81358 81358 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C36%2C0:69 scaffold1898 SAMTools SNP 81427 81427 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1898 SAMTools SNP 83152 83152 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1898 SAMTools SNP 83158 83158 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold1898 SAMTools SNP 95382 95382 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C162:34 scaffold1898 SAMTools SNP 95451 95451 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1898 SAMTools SNP 107263 107263 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold1898 SAMTools SNP 107347 107347 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1898 SAMTools SNP 107373 107373 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1898 SAMTools SNP 108755 108755 17.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1898 SAMTools SNP 108908 108908 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1898 SAMTools SNP 114343 114343 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1898 SAMTools SNP 114364 114364 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1898 SAMTools SNP 114997 114997 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold1898 SAMTools SNP 115043 115043 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C3%2C24%2C6%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.015%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold1898 SAMTools SNP 115550 115550 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C60%2C0:99 scaffold1898 SAMTools SNP 118184 118184 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 118449 118449 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 119078 119078 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1898 SAMTools SNP 120227 120227 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 125089 125089 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 125096 125096 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 163139 163139 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C53%2C27%2C46%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.13%2C2.7e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold1898 SAMTools SNP 163503 163503 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold1898 SAMTools SNP 203377 203377 25 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C13%2C4%2C53%2C0%2C50:15 scaffold1898 SAMTools SNP 203557 203557 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C24%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.02%2C3.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold1898 SAMTools SNP 203761 203761 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold1898 SAMTools SNP 203824 203824 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold1898 SAMTools SNP 203867 203867 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold1898 SAMTools SNP 204288 204288 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1898 SAMTools SNP 228006 228006 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C32%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.43%2C1%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1898 SAMTools SNP 237083 237083 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C2.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C204:48 scaffold1898 SAMTools SNP 237144 237144 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C107%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold1898 SAMTools SNP 241423 241423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 241432 241432 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C7%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold1898 SAMTools SNP 248843 248843 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1898 SAMTools SNP 249611 249611 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1898 SAMTools SNP 249634 249634 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1898 SAMTools SNP 250676 250676 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 250987 250987 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 275698 275698 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold1898 SAMTools SNP 275707 275707 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1898 SAMTools SNP 275863 275863 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 276903 276903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C18%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 277101 277101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 277412 277412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold1898 SAMTools SNP 278042 278042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1898 SAMTools SNP 278174 278174 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold1898 SAMTools SNP 281088 281088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C21%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 281154 281154 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C32%2C32%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C0.38%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1898 SAMTools SNP 283594 283594 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 283730 283730 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold1898 SAMTools SNP 284764 284764 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1898 SAMTools SNP 284785 284785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C60%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold1898 SAMTools SNP 286709 286709 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1898 SAMTools SNP 286742 286742 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1898 SAMTools SNP 287284 287284 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.28%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold1898 SAMTools SNP 287287 287287 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1898 SAMTools SNP 287308 287308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold1898 SAMTools SNP 305763 305763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1898 SAMTools SNP 306233 306233 53.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold1898 SAMTools SNP 306281 306281 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold1898 SAMTools SNP 306521 306521 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold1898 SAMTools SNP 306551 306551 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 7845 7845 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold1899 SAMTools SNP 106384 106384 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold1899 SAMTools SNP 111606 111606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C35%2C38%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.9e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 116728 116728 56.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold1899 SAMTools SNP 123026 123026 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C26:29 scaffold1899 SAMTools SNP 162516 162516 21.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold1899 SAMTools SNP 164933 164933 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C90%2C0:99 scaffold1899 SAMTools SNP 195132 195132 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1899 SAMTools SNP 198871 198871 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold1899 SAMTools SNP 203874 203874 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 203894 203894 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 228041 228041 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold1899 SAMTools SNP 228928 228928 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold1899 SAMTools SNP 229753 229753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 229765 229765 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 230880 230880 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1899 SAMTools SNP 253035 253035 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C8%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold1899 SAMTools SNP 253050 253050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 253110 253110 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C158:99 scaffold1899 SAMTools SNP 253140 253140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1899 SAMTools SNP 253149 253149 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold1899 SAMTools SNP 253161 253161 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.32%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1899 SAMTools SNP 254130 254130 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1899 SAMTools SNP 254139 254139 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold1899 SAMTools SNP 254709 254709 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold1899 SAMTools SNP 255358 255358 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 255396 255396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1899 SAMTools SNP 255837 255837 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold1899 SAMTools SNP 256115 256115 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C7.5e-07%2C1%2C5.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold1899 SAMTools SNP 259655 259655 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold1899 SAMTools SNP 259680 259680 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold1899 SAMTools SNP 259705 259705 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold1899 SAMTools SNP 262518 262518 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold1899 SAMTools SNP 266209 266209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1899 SAMTools SNP 266278 266278 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 266287 266287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 266461 266461 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1899 SAMTools SNP 266917 266917 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C45%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C6.3e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 267617 267617 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 267692 267692 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 269884 269884 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 269903 269903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1899 SAMTools SNP 269963 269963 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C4%2C34%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C6.8e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold1899 SAMTools SNP 279852 279852 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold1899 SAMTools SNP 280269 280269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 283317 283317 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 283338 283338 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 287107 287107 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1899 SAMTools SNP 287979 287979 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold1899 SAMTools SNP 290660 290660 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold1899 SAMTools SNP 291068 291068 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold1899 SAMTools SNP 291288 291288 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C42%2C0:81 scaffold1899 SAMTools SNP 291432 291432 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold1899 SAMTools SNP 292221 292221 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C13%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.38%2C4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold1899 SAMTools SNP 292255 292255 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C12%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold1899 SAMTools SNP 292954 292954 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold1899 SAMTools SNP 293191 293191 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold1899 SAMTools SNP 293210 293210 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1899 SAMTools SNP 293445 293445 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1899 SAMTools SNP 294001 294001 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1899 SAMTools SNP 294020 294020 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 294052 294052 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 294479 294479 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1899 SAMTools SNP 296618 296618 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0055%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1899 SAMTools SNP 297260 297260 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.55%2C0.4%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C242:99 scaffold1899 SAMTools SNP 298333 298333 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C224:99 scaffold1899 SAMTools SNP 298336 298336 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1899 SAMTools SNP 299449 299449 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 299458 299458 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 299464 299464 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.035%2C0.34%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1899 SAMTools SNP 299472 299472 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1899 SAMTools SNP 299581 299581 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1899 SAMTools SNP 299817 299817 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.25%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold1899 SAMTools SNP 300012 300012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold1899 SAMTools SNP 302137 302137 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1899 SAMTools SNP 302155 302155 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0042%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold1899 SAMTools SNP 302345 302345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold1899 SAMTools SNP 302373 302373 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold1899 SAMTools SNP 302904 302904 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold1899 SAMTools SNP 302914 302914 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.41%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 303826 303826 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1899 SAMTools SNP 303835 303835 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.055%2C0.052%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1899 SAMTools SNP 303853 303853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1899 SAMTools SNP 304381 304381 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1899 SAMTools SNP 304790 304790 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1899 SAMTools SNP 304841 304841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1899 SAMTools SNP 305059 305059 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C17%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold1899 SAMTools SNP 305308 305308 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold1899 SAMTools SNP 305429 305429 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C232:99 scaffold1899 SAMTools SNP 305512 305512 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 305536 305536 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 310048 310048 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 310063 310063 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1899 SAMTools SNP 311371 311371 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold1899 SAMTools SNP 311674 311674 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold1899 SAMTools SNP 312028 312028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D46%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1899 SAMTools SNP 343710 343710 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C42%2C0:81 scaffold1899 SAMTools SNP 343928 343928 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C2%2C6%3BMQ%3D47%3BFQ%3D88%3BPV4%3D0.67%2C1%2C5e-05%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold1899 SAMTools SNP 343965 343965 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C1%2C3%3BMQ%3D49%3BFQ%3D73%3BPV4%3D0.33%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold1899 SAMTools SNP 343979 343979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold1899 SAMTools SNP 344335 344335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C19%3BMQ%3D48%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold1899 SAMTools SNP 344374 344374 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C19%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.14%2C0.35%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1899 SAMTools SNP 347351 347351 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D32%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C45%2C0:72 scaffold1899 SAMTools SNP 348473 348473 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C78%2C0:99 scaffold19 SAMTools SNP 3233 3233 6.19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C57%2C0:48 scaffold19 SAMTools SNP 4812 4812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 4833 4833 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 5106 5106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold19 SAMTools SNP 5295 5295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C22%2C21%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold19 SAMTools SNP 5307 5307 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C3.8e-16%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 5451 5451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C45%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold19 SAMTools SNP 5620 5620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold19 SAMTools SNP 5674 5674 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C78%2C0:99 scaffold19 SAMTools SNP 5868 5868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.13%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold19 SAMTools SNP 6899 6899 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C72%2C0:99 scaffold19 SAMTools SNP 7040 7040 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.026%2C3.9e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C236:80 scaffold19 SAMTools SNP 7098 7098 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.05%2C1.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold19 SAMTools SNP 7947 7947 45.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold19 SAMTools SNP 8091 8091 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.6%2C0.00028%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold19 SAMTools SNP 8106 8106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold19 SAMTools SNP 8600 8600 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 8622 8622 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 10834 10834 56.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold19 SAMTools SNP 11026 11026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold19 SAMTools SNP 11071 11071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C21%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold19 SAMTools SNP 11463 11463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 11483 11483 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 11906 11906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C43%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold19 SAMTools SNP 12681 12681 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C54%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C6.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 12690 12690 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C21%2C20%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold19 SAMTools SNP 13241 13241 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C83%2C9%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 13869 13869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 14892 14892 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold19 SAMTools SNP 14906 14906 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.32%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold19 SAMTools SNP 14927 14927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 15418 15418 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.13%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold19 SAMTools SNP 15758 15758 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00082%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold19 SAMTools SNP 15826 15826 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold19 SAMTools SNP 16084 16084 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold19 SAMTools SNP 16314 16314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold19 SAMTools SNP 16332 16332 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold19 SAMTools SNP 16449 16449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold19 SAMTools SNP 16730 16730 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.0023%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold19 SAMTools SNP 19139 19139 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.2%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold19 SAMTools SNP 19543 19543 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold19 SAMTools SNP 19552 19552 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold19 SAMTools SNP 25300 25300 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C3%3BMQ%3D41%3BFQ%3D106%3BPV4%3D1%2C1%2C0.049%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C149:99 scaffold19 SAMTools SNP 26260 26260 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold19 SAMTools SNP 27910 27910 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold19 SAMTools SNP 27915 27915 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold19 SAMTools SNP 27978 27978 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold19 SAMTools SNP 28300 28300 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold19 SAMTools SNP 28357 28357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.28%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold19 SAMTools SNP 28384 28384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C12%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.12%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold19 SAMTools SNP 29575 29575 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold19 SAMTools SNP 31495 31495 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold19 SAMTools SNP 31516 31516 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold19 SAMTools SNP 31693 31693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold19 SAMTools SNP 31759 31759 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.22%2C0.011%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold19 SAMTools SNP 31937 31937 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C239:99 scaffold19 SAMTools SNP 31964 31964 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C240:99 scaffold19 SAMTools SNP 32177 32177 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold19 SAMTools SNP 32698 32698 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-70;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C168%2C125:83 scaffold19 SAMTools SNP 32890 32890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold19 SAMTools SNP 32896 32896 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.098%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold19 SAMTools SNP 33392 33392 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold19 SAMTools SNP 33401 33401 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.63%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold19 SAMTools SNP 33491 33491 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.062%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C197:65 scaffold19 SAMTools SNP 36882 36882 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold19 SAMTools SNP 37456 37456 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold19 SAMTools SNP 38154 38154 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C213:99 scaffold19 SAMTools SNP 38187 38187 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.27%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C210:99 scaffold19 SAMTools SNP 38196 38196 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C235:99 scaffold19 SAMTools SNP 38396 38396 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold19 SAMTools SNP 38405 38405 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold19 SAMTools SNP 40898 40898 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C17%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold19 SAMTools SNP 41211 41211 100 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C86%2C77%2C133%2C0%2C127:16 scaffold19 SAMTools SNP 41408 41408 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C142:99 scaffold19 SAMTools SNP 41471 41471 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.18%2C0.19%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold19 SAMTools SNP 41528 41528 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold19 SAMTools SNP 42009 42009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 42549 42549 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold19 SAMTools SNP 42612 42612 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold19 SAMTools SNP 43251 43251 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold19 SAMTools SNP 43850 43850 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold19 SAMTools SNP 43888 43888 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold19 SAMTools SNP 44833 44833 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold19 SAMTools SNP 45466 45466 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.017%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold19 SAMTools SNP 45481 45481 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.16%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 45710 45710 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C0%2C30%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0029%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold19 SAMTools SNP 46212 46212 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold19 SAMTools SNP 49118 49118 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold19 SAMTools SNP 49222 49222 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold19 SAMTools SNP 56695 56695 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold19 SAMTools SNP 60544 60544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C24%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold19 SAMTools SNP 61398 61398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold19 SAMTools SNP 61698 61698 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 61719 61719 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C5%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold19 SAMTools SNP 61755 61755 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C5%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.7%2C1%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold19 SAMTools SNP 62186 62186 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 62568 62568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold19 SAMTools SNP 62651 62651 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C15%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.19%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold19 SAMTools SNP 64753 64753 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold19 SAMTools SNP 64823 64823 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.2%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold19 SAMTools SNP 64865 64865 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold19 SAMTools SNP 65249 65249 120 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C102%2C204%2C0%2C195:33 scaffold19 SAMTools SNP 65276 65276 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold19 SAMTools SNP 65650 65650 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold19 SAMTools SNP 66153 66153 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold19 SAMTools SNP 67930 67930 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold19 SAMTools SNP 73788 73788 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold19 SAMTools SNP 73806 73806 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold19 SAMTools SNP 73866 73866 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold19 SAMTools SNP 110918 110918 25.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold19 SAMTools SNP 110971 110971 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C111%2C0:99 scaffold19 SAMTools SNP 111121 111121 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C78%2C0:99 scaffold19 SAMTools SNP 138065 138065 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold19 SAMTools SNP 146359 146359 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold19 SAMTools SNP 151454 151454 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C11%2C33%3BMQ%3D26%3BFQ%3D92%3BPV4%3D0.17%2C1%2C0.0029%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C250:99 scaffold19 SAMTools SNP 157812 157812 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C4%3BMQ%3D46%3BFQ%3D37%3BPV4%3D1%2C0.13%2C0.48%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold19 SAMTools SNP 158428 158428 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold19 SAMTools SNP 159164 159164 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold19 SAMTools SNP 167485 167485 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold19 SAMTools SNP 167955 167955 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold19 SAMTools SNP 168842 168842 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold19 SAMTools SNP 168857 168857 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold19 SAMTools SNP 194409 194409 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold19 SAMTools SNP 208743 208743 4.12 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C61%3BMQ%3D9%3BFQ%3D-170%3BPV4%3D1%2C0.32%2C7.6e-11%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C143%2C0:39 scaffold19 SAMTools SNP 209872 209872 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold19 SAMTools SNP 211461 211461 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold19 SAMTools SNP 211466 211466 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold19 SAMTools SNP 219359 219359 172 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C37%2C13%2C190%2C0%2C187:45 scaffold19 SAMTools SNP 220448 220448 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold19 SAMTools SNP 221891 221891 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C17%3BMQ%3D39%3BFQ%3D-108%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold19 SAMTools SNP 221915 221915 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold19 SAMTools SNP 225107 225107 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold190 SAMTools SNP 2755 2755 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold190 SAMTools SNP 3356 3356 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold190 SAMTools SNP 3365 3365 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold190 SAMTools SNP 5476 5476 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C57%2C0:99 scaffold190 SAMTools SNP 5484 5484 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold190 SAMTools SNP 6563 6563 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold190 SAMTools SNP 6569 6569 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold190 SAMTools SNP 6716 6716 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.5%2C4.5e-50%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C246:99 scaffold190 SAMTools SNP 6813 6813 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C255%2C0:99 scaffold190 SAMTools SNP 13812 13812 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.21%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C162:99 scaffold190 SAMTools SNP 13872 13872 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C153:46 scaffold190 SAMTools SNP 14979 14979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold190 SAMTools SNP 19988 19988 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold190 SAMTools SNP 20877 20877 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C48%2C0:93 scaffold190 SAMTools SNP 21029 21029 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold190 SAMTools SNP 22307 22307 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold190 SAMTools SNP 22540 22540 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 23547 23547 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold190 SAMTools SNP 23579 23579 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold190 SAMTools SNP 25617 25617 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold190 SAMTools SNP 25749 25749 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold190 SAMTools SNP 25767 25767 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C38:41 scaffold190 SAMTools SNP 25772 25772 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold190 SAMTools SNP 29919 29919 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 29927 29927 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 34626 34626 21.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold190 SAMTools SNP 34690 34690 14.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold190 SAMTools SNP 34893 34893 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold190 SAMTools SNP 35753 35753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold190 SAMTools SNP 35948 35948 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C117:99 scaffold190 SAMTools SNP 36931 36931 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold190 SAMTools SNP 37105 37105 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold190 SAMTools SNP 37273 37273 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold190 SAMTools SNP 37318 37318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold190 SAMTools SNP 37841 37841 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold190 SAMTools SNP 37893 37893 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold190 SAMTools SNP 37946 37946 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold190 SAMTools SNP 39433 39433 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold190 SAMTools SNP 39454 39454 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold190 SAMTools SNP 39481 39481 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold190 SAMTools SNP 39531 39531 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold190 SAMTools SNP 53383 53383 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold190 SAMTools SNP 59597 59597 95.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C21%2C0:39 scaffold190 SAMTools SNP 59624 59624 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C17%3BMQ%3D45%3BFQ%3D-57%3BPV4%3D0.00088%2C0.44%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold190 SAMTools SNP 59945 59945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C15%3BMQ%3D44%3BFQ%3D-59%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C32%2C0:61 scaffold190 SAMTools SNP 60482 60482 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C3%3BMQ%3D45%3BFQ%3D33%3BPV4%3D1%2C4.3e-11%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C250:63 scaffold190 SAMTools SNP 60620 60620 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold190 SAMTools SNP 60908 60908 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold190 SAMTools SNP 61204 61204 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold190 SAMTools SNP 61215 61215 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold190 SAMTools SNP 61442 61442 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 61478 61478 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold190 SAMTools SNP 62259 62259 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 62423 62423 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold190 SAMTools SNP 62486 62486 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 62489 62489 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 62892 62892 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C51%2C0:99 scaffold190 SAMTools SNP 64536 64536 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.29%2C0.0033%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold190 SAMTools SNP 64553 64553 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.28%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C73:76 scaffold190 SAMTools SNP 64907 64907 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold190 SAMTools SNP 68810 68810 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.33%2C0.037%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C183:99 scaffold190 SAMTools SNP 74302 74302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold190 SAMTools SNP 74929 74929 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold190 SAMTools SNP 75652 75652 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold190 SAMTools SNP 76195 76195 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C0.096%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C143:99 scaffold190 SAMTools SNP 76252 76252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold190 SAMTools SNP 77323 77323 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold190 SAMTools SNP 78031 78031 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold190 SAMTools SNP 78032 78032 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold190 SAMTools SNP 78335 78335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold190 SAMTools SNP 78350 78350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold190 SAMTools SNP 78838 78838 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold190 SAMTools SNP 82270 82270 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C102%2C0:99 scaffold190 SAMTools SNP 83564 83564 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C84%2C0:99 scaffold190 SAMTools SNP 83893 83893 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C77:37 scaffold190 SAMTools SNP 86521 86521 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold190 SAMTools SNP 86530 86530 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold190 SAMTools SNP 86976 86976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 87024 87024 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold190 SAMTools SNP 88704 88704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold190 SAMTools SNP 88779 88779 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold190 SAMTools SNP 89289 89289 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold190 SAMTools SNP 89317 89317 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold190 SAMTools SNP 91500 91500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold190 SAMTools SNP 91848 91848 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.15%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C254:99 scaffold190 SAMTools SNP 91878 91878 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.55%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold190 SAMTools SNP 92416 92416 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C0.32%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold190 SAMTools SNP 93217 93217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.15%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold190 SAMTools SNP 93543 93543 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold190 SAMTools SNP 93922 93922 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold190 SAMTools SNP 96473 96473 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold190 SAMTools SNP 98259 98259 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold190 SAMTools SNP 101243 101243 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 101974 101974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold190 SAMTools SNP 104762 104762 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold190 SAMTools SNP 110979 110979 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold190 SAMTools SNP 176574 176574 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold190 SAMTools SNP 177097 177097 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold190 SAMTools SNP 177099 177099 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold190 SAMTools SNP 177113 177113 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold190 SAMTools SNP 177135 177135 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold190 SAMTools SNP 177151 177151 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold190 SAMTools SNP 178417 178417 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 179862 179862 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold190 SAMTools SNP 179879 179879 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold190 SAMTools SNP 182520 182520 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold190 SAMTools SNP 182535 182535 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold190 SAMTools SNP 182637 182637 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold190 SAMTools SNP 182669 182669 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C137:74 scaffold190 SAMTools SNP 182672 182672 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C163:44 scaffold190 SAMTools SNP 182977 182977 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 183066 183066 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C42%2C0:81 scaffold190 SAMTools SNP 183638 183638 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.028%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C250:99 scaffold190 SAMTools SNP 183646 183646 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C185:99 scaffold190 SAMTools SNP 183668 183668 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold190 SAMTools SNP 183714 183714 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C3.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold190 SAMTools SNP 184521 184521 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.083%2C8.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold190 SAMTools SNP 203346 203346 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold190 SAMTools SNP 203820 203820 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.17%2C4.6e-07%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C10%2C0:17 scaffold190 SAMTools SNP 203840 203840 23.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-39%3BPV4%3D0.29%2C2.5e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold190 SAMTools SNP 205039 205039 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold190 SAMTools SNP 213708 213708 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.045%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold190 SAMTools SNP 217676 217676 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D0.25%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C38:41 scaffold190 SAMTools SNP 218090 218090 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C24%2C0:45 scaffold190 SAMTools SNP 218180 218180 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0016%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C104:55 scaffold190 SAMTools SNP 221845 221845 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold190 SAMTools SNP 221858 221858 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold190 SAMTools SNP 226749 226749 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold190 SAMTools SNP 228003 228003 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C187:99 scaffold190 SAMTools SNP 228037 228037 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C211:99 scaffold190 SAMTools SNP 228179 228179 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold190 SAMTools SNP 229510 229510 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold190 SAMTools SNP 229564 229564 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold190 SAMTools SNP 231181 231181 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 231186 231186 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 231214 231214 46.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold190 SAMTools SNP 231723 231723 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold190 SAMTools SNP 231739 231739 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold190 SAMTools SNP 231752 231752 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold190 SAMTools SNP 231802 231802 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold190 SAMTools SNP 232261 232261 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold190 SAMTools SNP 238164 238164 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C7.2e-13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C45:48 scaffold190 SAMTools SNP 238260 238260 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C6%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.17%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold190 SAMTools SNP 238884 238884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold190 SAMTools SNP 239522 239522 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold190 SAMTools SNP 240271 240271 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold190 SAMTools SNP 240292 240292 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C7%3BMQ%3D46%3BFQ%3D-16.1%3BPV4%3D0.46%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold190 SAMTools SNP 240385 240385 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C0.44%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold190 SAMTools SNP 240403 240403 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C0%2C5%3BMQ%3D49%3BFQ%3D50%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold190 SAMTools SNP 241127 241127 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C15%2C22%3BMQ%3D49%3BFQ%3D194%3BPV4%3D0.17%2C0.33%2C0.28%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold190 SAMTools SNP 241388 241388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C18%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D0.37%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold190 SAMTools SNP 241845 241845 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold190 SAMTools SNP 242446 242446 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold190 SAMTools SNP 252698 252698 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C197:31 scaffold190 SAMTools SNP 252775 252775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold190 SAMTools SNP 252782 252782 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold190 SAMTools SNP 255135 255135 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold190 SAMTools SNP 255153 255153 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold190 SAMTools SNP 255863 255863 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D37%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C204:51 scaffold190 SAMTools SNP 255993 255993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D44%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold190 SAMTools SNP 256652 256652 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C61%2C1%2C19%3BMQ%3D48%3BFQ%3D166%3BPV4%3D0.68%2C0.45%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold190 SAMTools SNP 256688 256688 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C27%3BMQ%3D49%3BFQ%3D188%3BPV4%3D1%2C0.024%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C254:99 scaffold190 SAMTools SNP 256700 256700 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C71%2C0%2C9%3BMQ%3D49%3BFQ%3D6.2%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold190 SAMTools SNP 256823 256823 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0002%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold190 SAMTools SNP 268735 268735 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold190 SAMTools SNP 269224 269224 37.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold190 SAMTools SNP 295016 295016 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold190 SAMTools SNP 295081 295081 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 296651 296651 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold190 SAMTools SNP 296671 296671 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 2388 2388 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold1900 SAMTools SNP 4807 4807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1900 SAMTools SNP 4966 4966 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1900 SAMTools SNP 5254 5254 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1900 SAMTools SNP 5291 5291 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold1900 SAMTools SNP 9060 9060 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 9879 9879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 20513 20513 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1900 SAMTools SNP 22311 22311 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1900 SAMTools SNP 22320 22320 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1900 SAMTools SNP 22330 22330 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1900 SAMTools SNP 22359 22359 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold1900 SAMTools SNP 22466 22466 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 22789 22789 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 22805 22805 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 25852 25852 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1900 SAMTools SNP 41102 41102 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 41103 41103 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 43002 43002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 57458 57458 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1900 SAMTools SNP 68135 68135 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1900 SAMTools SNP 84727 84727 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold1900 SAMTools SNP 96364 96364 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold1900 SAMTools SNP 96724 96724 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold1900 SAMTools SNP 96748 96748 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold1900 SAMTools SNP 96918 96918 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C54%2C10%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1.2e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold1900 SAMTools SNP 112669 112669 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.53%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold1900 SAMTools SNP 112724 112724 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1900 SAMTools SNP 112727 112727 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C37:40 scaffold1900 SAMTools SNP 118764 118764 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1900 SAMTools SNP 118899 118899 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1900 SAMTools SNP 118912 118912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1900 SAMTools SNP 119207 119207 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1900 SAMTools SNP 121669 121669 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.00039%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold1900 SAMTools SNP 122098 122098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 124597 124597 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.33%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold1900 SAMTools SNP 125018 125018 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold1900 SAMTools SNP 125567 125567 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.38%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1900 SAMTools SNP 126088 126088 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold1900 SAMTools SNP 126734 126734 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00034%2C0.17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold1900 SAMTools SNP 129172 129172 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C1%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.66%2C1%2C1%2C4.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold1900 SAMTools SNP 135213 135213 4.19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D15%2C0%2C28%2C1%3BMQ%3D8%3BFQ%3D-46%3BPV4%3D1%2C0.5%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C19%2C0:18 scaffold1900 SAMTools SNP 135258 135258 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C6%2C5%3BMQ%3D21%3BFQ%3D24.8%3BPV4%3D0.005%2C0.00064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C64:55 scaffold1900 SAMTools SNP 135381 135381 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C121:51 scaffold1900 SAMTools SNP 141541 141541 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1900 SAMTools SNP 142987 142987 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 143067 143067 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1900 SAMTools SNP 144654 144654 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1900 SAMTools SNP 144675 144675 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1900 SAMTools SNP 149445 149445 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold1900 SAMTools SNP 149487 149487 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C39%2C0:75 scaffold1900 SAMTools SNP 150353 150353 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1900 SAMTools SNP 151059 151059 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1900 SAMTools SNP 151086 151086 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1900 SAMTools SNP 176317 176317 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1900 SAMTools SNP 178066 178066 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C203:99 scaffold1900 SAMTools SNP 189435 189435 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C33%2C0:63 scaffold1900 SAMTools SNP 189682 189682 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C9.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold1900 SAMTools SNP 189742 189742 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C41%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C141%2C0:99 scaffold1900 SAMTools SNP 189757 189757 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1900 SAMTools SNP 190190 190190 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C11%2C18%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.19%2C2.2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1900 SAMTools SNP 190384 190384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold1900 SAMTools SNP 190893 190893 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold1900 SAMTools SNP 191546 191546 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0006%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C17:20 scaffold1900 SAMTools SNP 198131 198131 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1900 SAMTools SNP 198146 198146 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.17%2C0.0042%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C239:34 scaffold1900 SAMTools SNP 198177 198177 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1900 SAMTools SNP 198811 198811 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1900 SAMTools SNP 199474 199474 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1900 SAMTools SNP 199489 199489 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1900 SAMTools SNP 199513 199513 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1900 SAMTools SNP 201146 201146 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1900 SAMTools SNP 201556 201556 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1900 SAMTools SNP 201612 201612 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold1900 SAMTools SNP 201646 201646 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C79:82 scaffold1900 SAMTools SNP 202413 202413 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1900 SAMTools SNP 202441 202441 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1900 SAMTools SNP 202869 202869 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1900 SAMTools SNP 203271 203271 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 203293 203293 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1900 SAMTools SNP 203328 203328 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold1900 SAMTools SNP 203603 203603 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold1900 SAMTools SNP 203648 203648 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1900 SAMTools SNP 204148 204148 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.098%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1900 SAMTools SNP 204225 204225 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.55%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C197:60 scaffold1900 SAMTools SNP 204283 204283 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold1900 SAMTools SNP 204302 204302 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold1900 SAMTools SNP 205020 205020 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1900 SAMTools SNP 205656 205656 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C4.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C220:91 scaffold1900 SAMTools SNP 206385 206385 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1900 SAMTools SNP 206951 206951 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold1900 SAMTools SNP 206953 206953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1900 SAMTools SNP 207151 207151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 207152 207152 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 207542 207542 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.43%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C208:53 scaffold1900 SAMTools SNP 207607 207607 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold1900 SAMTools SNP 207885 207885 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold1900 SAMTools SNP 207999 207999 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.045%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold1900 SAMTools SNP 208713 208713 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0015%2C0.15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1900 SAMTools SNP 208719 208719 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0015%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold1900 SAMTools SNP 208737 208737 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1900 SAMTools SNP 209024 209024 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1900 SAMTools SNP 210062 210062 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1900 SAMTools SNP 210087 210087 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold1900 SAMTools SNP 210272 210272 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1900 SAMTools SNP 210298 210298 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold1900 SAMTools SNP 213011 213011 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1900 SAMTools SNP 213058 213058 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold1900 SAMTools SNP 214706 214706 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1900 SAMTools SNP 215146 215146 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold1900 SAMTools SNP 215229 215229 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1900 SAMTools SNP 215612 215612 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1900 SAMTools SNP 215623 215623 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1900 SAMTools SNP 216113 216113 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold1900 SAMTools SNP 216399 216399 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1900 SAMTools SNP 216447 216447 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold1900 SAMTools SNP 216678 216678 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1900 SAMTools SNP 217996 217996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold1900 SAMTools SNP 218370 218370 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1900 SAMTools SNP 218713 218713 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C0.0006%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C162:99 scaffold1900 SAMTools SNP 218797 218797 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C139:53 scaffold1900 SAMTools SNP 221303 221303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1900 SAMTools SNP 221310 221310 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.2%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold1900 SAMTools SNP 221716 221716 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.55%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1900 SAMTools SNP 222442 222442 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold1900 SAMTools SNP 222493 222493 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold1900 SAMTools SNP 226010 226010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold1900 SAMTools SNP 226348 226348 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1900 SAMTools SNP 227220 227220 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.36%2C3.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1900 SAMTools SNP 227576 227576 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 228004 228004 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C57%2C0:99 scaffold1900 SAMTools SNP 229851 229851 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C2.4e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C152:99 scaffold1900 SAMTools SNP 240886 240886 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold1900 SAMTools SNP 256447 256447 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1900 SAMTools SNP 257040 257040 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1900 SAMTools SNP 257064 257064 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C0.0016%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold1900 SAMTools SNP 257267 257267 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0021%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1900 SAMTools SNP 258063 258063 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 258192 258192 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.19%2C0.0037%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C243:99 scaffold1900 SAMTools SNP 260186 260186 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold1900 SAMTools SNP 264347 264347 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.0023%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C154:99 scaffold1900 SAMTools SNP 264821 264821 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1900 SAMTools SNP 264935 264935 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1900 SAMTools SNP 265524 265524 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold1900 SAMTools SNP 265547 265547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1900 SAMTools SNP 265950 265950 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C0.37%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold1900 SAMTools SNP 265980 265980 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C30%2C0:57 scaffold1900 SAMTools SNP 266641 266641 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 266932 266932 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.11%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C245:99 scaffold1900 SAMTools SNP 267246 267246 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1900 SAMTools SNP 268763 268763 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C170:99 scaffold1900 SAMTools SNP 268769 268769 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.082%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C218:99 scaffold1900 SAMTools SNP 268937 268937 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold1900 SAMTools SNP 270459 270459 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold1900 SAMTools SNP 278934 278934 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold1900 SAMTools SNP 279024 279024 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold1900 SAMTools SNP 279030 279030 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold1900 SAMTools SNP 279189 279189 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C173:99 scaffold1900 SAMTools SNP 279234 279234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1900 SAMTools SNP 280088 280088 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1900 SAMTools SNP 281218 281218 67.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold1900 SAMTools SNP 281375 281375 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C27%2C0:51 scaffold1900 SAMTools SNP 282373 282373 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 282636 282636 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold1900 SAMTools SNP 283334 283334 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 283383 283383 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C3%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.32%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold1900 SAMTools SNP 283408 283408 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.63%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold1900 SAMTools SNP 283572 283572 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold1900 SAMTools SNP 283632 283632 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1900 SAMTools SNP 285525 285525 33.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold1900 SAMTools SNP 286167 286167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.4%2C0.0093%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold1900 SAMTools SNP 289533 289533 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1900 SAMTools SNP 303530 303530 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1900 SAMTools SNP 303719 303719 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.15%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold1900 SAMTools SNP 303912 303912 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0061%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C173:47 scaffold1900 SAMTools SNP 313075 313075 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1900 SAMTools SNP 313354 313354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C37%2C20%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D0.54%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1900 SAMTools SNP 314360 314360 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 315496 315496 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1900 SAMTools SNP 315706 315706 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C60%2C1%2C18%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold1900 SAMTools SNP 316481 316481 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.081%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C76:79 scaffold1900 SAMTools SNP 318312 318312 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.088%2C0.0016%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold1900 SAMTools SNP 318562 318562 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.076%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold1900 SAMTools SNP 319171 319171 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.48%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold1900 SAMTools SNP 323844 323844 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold1900 SAMTools SNP 324250 324250 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 324256 324256 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 324410 324410 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold1900 SAMTools SNP 324414 324414 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1900 SAMTools SNP 324634 324634 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 324692 324692 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.56%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1900 SAMTools SNP 324697 324697 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.23%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold1900 SAMTools SNP 324962 324962 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold1900 SAMTools SNP 325409 325409 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.36%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1900 SAMTools SNP 325700 325700 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C23%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0001%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold1900 SAMTools SNP 325720 325720 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C15%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0014%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold1900 SAMTools SNP 325813 325813 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C5%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold1900 SAMTools SNP 326114 326114 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.00073%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold1900 SAMTools SNP 327314 327314 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold1900 SAMTools SNP 327514 327514 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C31%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.085%2C3.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold1900 SAMTools SNP 327661 327661 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C16%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C2e-27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold1900 SAMTools SNP 327724 327724 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C2.2e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C252:85 scaffold1900 SAMTools SNP 327730 327730 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.56%2C3.2e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold1900 SAMTools SNP 328447 328447 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C18%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.4e-25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1900 SAMTools SNP 329697 329697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1900 SAMTools SNP 329709 329709 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C15%2C0:27 scaffold1900 SAMTools SNP 329937 329937 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C195:96 scaffold1900 SAMTools SNP 330335 330335 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold1900 SAMTools SNP 330401 330401 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold1900 SAMTools SNP 330404 330404 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1900 SAMTools SNP 330756 330756 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1900 SAMTools SNP 330877 330877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 331163 331163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 331610 331610 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1900 SAMTools SNP 331615 331615 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0088%2C0.0017%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1900 SAMTools SNP 331633 331633 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.04%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold1900 SAMTools SNP 333726 333726 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.36%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C215:36 scaffold1900 SAMTools SNP 335493 335493 54.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold1900 SAMTools SNP 335517 335517 13.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5063%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C16:19 scaffold1900 SAMTools SNP 335691 335691 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C102:33 scaffold1900 SAMTools SNP 337380 337380 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1900 SAMTools SNP 337381 337381 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1900 SAMTools SNP 337464 337464 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold1900 SAMTools SNP 338701 338701 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1900 SAMTools SNP 341805 341805 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C0.29%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C111:71 scaffold1900 SAMTools SNP 342255 342255 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold1900 SAMTools SNP 344718 344718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1900 SAMTools SNP 344764 344764 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.27%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1900 SAMTools SNP 345654 345654 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.11%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold1900 SAMTools SNP 349189 349189 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold1900 SAMTools SNP 349367 349367 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C21%2C0:39 scaffold1900 SAMTools SNP 349684 349684 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold1900 SAMTools SNP 350752 350752 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C20%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.24%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold1900 SAMTools SNP 350755 350755 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold1900 SAMTools SNP 365108 365108 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold1900 SAMTools SNP 428354 428354 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C42%2C0:62 scaffold1900 SAMTools SNP 430271 430271 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1900 SAMTools SNP 433742 433742 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C4%3BMQ%3D35%3BFQ%3D33%3BPV4%3D0.088%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C148:63 scaffold1900 SAMTools SNP 436286 436286 3.02 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C23%2C20%2C30%2C0%2C27:4 scaffold1900 SAMTools SNP 436627 436627 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold1900 SAMTools SNP 436728 436728 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 436996 436996 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1900 SAMTools SNP 437028 437028 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1900 SAMTools SNP 437712 437712 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1900 SAMTools SNP 437719 437719 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1900 SAMTools SNP 444116 444116 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1900 SAMTools SNP 444843 444843 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1900 SAMTools SNP 454304 454304 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold1900 SAMTools SNP 454828 454828 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C38%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C129%2C0:99 scaffold1900 SAMTools SNP 454894 454894 33.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold1900 SAMTools SNP 468796 468796 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold1901 SAMTools SNP 3993 3993 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 4047 4047 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold1901 SAMTools SNP 4059 4059 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold1901 SAMTools SNP 4519 4519 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C0.0064%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1901 SAMTools SNP 4543 4543 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.13%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1901 SAMTools SNP 4567 4567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1901 SAMTools SNP 4953 4953 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1901 SAMTools SNP 4992 4992 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 5016 5016 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 5065 5065 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold1901 SAMTools SNP 5076 5076 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D175%3BPV4%3D4.8e-10%2C6.5e-09%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold1901 SAMTools SNP 5751 5751 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 5892 5892 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold1901 SAMTools SNP 5994 5994 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C0:57 scaffold1901 SAMTools SNP 50400 50400 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold1901 SAMTools SNP 50844 50844 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.009%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold1901 SAMTools SNP 53284 53284 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold1901 SAMTools SNP 53343 53343 66.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold1901 SAMTools SNP 53397 53397 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold1901 SAMTools SNP 54048 54048 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold1901 SAMTools SNP 54775 54775 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold1901 SAMTools SNP 54814 54814 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.072%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold1901 SAMTools SNP 55544 55544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1901 SAMTools SNP 55551 55551 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold1901 SAMTools SNP 58205 58205 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1901 SAMTools SNP 58602 58602 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C24%2C0:45 scaffold1901 SAMTools SNP 75788 75788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 75861 75861 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 78261 78261 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 78267 78267 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold1901 SAMTools SNP 78914 78914 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 81019 81019 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1901 SAMTools SNP 83896 83896 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1901 SAMTools SNP 83914 83914 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1901 SAMTools SNP 84554 84554 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 84590 84590 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 85577 85577 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold1901 SAMTools SNP 88888 88888 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold1901 SAMTools SNP 88918 88918 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold1901 SAMTools SNP 88925 88925 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold1901 SAMTools SNP 92908 92908 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C45%2C0:87 scaffold1901 SAMTools SNP 93049 93049 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00061%2C2.3e-28%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold1901 SAMTools SNP 93069 93069 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold1901 SAMTools SNP 93223 93223 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.033%2C0.00056%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C244:47 scaffold1901 SAMTools SNP 93433 93433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1901 SAMTools SNP 104767 104767 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold1901 SAMTools SNP 104779 104779 18.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold1901 SAMTools SNP 105424 105424 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1901 SAMTools SNP 112554 112554 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 140796 140796 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 146233 146233 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 155491 155491 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 159110 159110 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1901 SAMTools SNP 162829 162829 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold1901 SAMTools SNP 163303 163303 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.51%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold1901 SAMTools SNP 163343 163343 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold1901 SAMTools SNP 164251 164251 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 164261 164261 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 165312 165312 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C69:34 scaffold1901 SAMTools SNP 165994 165994 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 167606 167606 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 168744 168744 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold1901 SAMTools SNP 170988 170988 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold1901 SAMTools SNP 187708 187708 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.68%2C1e-24%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold1901 SAMTools SNP 187749 187749 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C54%2C0:97 scaffold1901 SAMTools SNP 187787 187787 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C40%2C6%2C32%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1.8e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold1901 SAMTools SNP 189086 189086 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold1901 SAMTools SNP 190598 190598 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.037%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold1901 SAMTools SNP 190635 190635 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.54%2C0.15%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold1901 SAMTools SNP 191364 191364 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 191769 191769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold1901 SAMTools SNP 191787 191787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold1901 SAMTools SNP 193648 193648 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.00051%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold1901 SAMTools SNP 194600 194600 6.79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold1901 SAMTools SNP 195520 195520 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold1901 SAMTools SNP 204646 204646 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C132:49 scaffold1901 SAMTools SNP 206698 206698 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C2.9e-11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold1901 SAMTools SNP 207162 207162 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C0.0037%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C239:99 scaffold1901 SAMTools SNP 209753 209753 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C224:99 scaffold1901 SAMTools SNP 209772 209772 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1901 SAMTools SNP 210455 210455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 210855 210855 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 211973 211973 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold1901 SAMTools SNP 212584 212584 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C110:88 scaffold1901 SAMTools SNP 212729 212729 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 212736 212736 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold1901 SAMTools SNP 212781 212781 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold1901 SAMTools SNP 225476 225476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C118%2C12%3BMQ%3D50%3BFQ%3D-260%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C233%2C0:99 scaffold1901 SAMTools SNP 225858 225858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1901 SAMTools SNP 226244 226244 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold1901 SAMTools SNP 226322 226322 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold1901 SAMTools SNP 226783 226783 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold1901 SAMTools SNP 226890 226890 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1901 SAMTools SNP 230645 230645 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold1901 SAMTools SNP 230656 230656 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold1901 SAMTools SNP 230683 230683 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 231436 231436 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C76%2C0%2C9%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold1901 SAMTools SNP 231439 231439 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C74%2C0%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold1901 SAMTools SNP 231735 231735 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.15%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold1901 SAMTools SNP 231759 231759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 231792 231792 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 231960 231960 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 232280 232280 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0023%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold1901 SAMTools SNP 232319 232319 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1901 SAMTools SNP 232402 232402 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1901 SAMTools SNP 232424 232424 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1901 SAMTools SNP 232717 232717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold1901 SAMTools SNP 232903 232903 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold1901 SAMTools SNP 233210 233210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1901 SAMTools SNP 233243 233243 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1901 SAMTools SNP 233721 233721 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold1901 SAMTools SNP 233730 233730 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 233816 233816 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold1901 SAMTools SNP 234364 234364 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 234384 234384 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1901 SAMTools SNP 234424 234424 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold1901 SAMTools SNP 234716 234716 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 235152 235152 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold1901 SAMTools SNP 235206 235206 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.26%2C0.31%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C240:99 scaffold1901 SAMTools SNP 235466 235466 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1901 SAMTools SNP 235499 235499 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1901 SAMTools SNP 237134 237134 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold1901 SAMTools SNP 249852 249852 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 250372 250372 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 250735 250735 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold1901 SAMTools SNP 256543 256543 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold1901 SAMTools SNP 258022 258022 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold1901 SAMTools SNP 258933 258933 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 258951 258951 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 267751 267751 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C30%2C0:57 scaffold1901 SAMTools SNP 268572 268572 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold1901 SAMTools SNP 268581 268581 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C30%2C0:57 scaffold1901 SAMTools SNP 269899 269899 36.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D40%3BFQ%3D-32%3BPV4%3D0.11%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C5%2C0:9 scaffold1901 SAMTools SNP 269938 269938 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 269946 269946 92.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold1901 SAMTools SNP 286640 286640 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold1901 SAMTools SNP 287242 287242 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 292063 292063 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C63%2C0:99 scaffold1901 SAMTools SNP 295164 295164 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold1901 SAMTools SNP 296991 296991 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold1901 SAMTools SNP 297962 297962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.021%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold1901 SAMTools SNP 298019 298019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold1901 SAMTools SNP 304046 304046 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 304349 304349 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C7.8e-15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold1901 SAMTools SNP 304598 304598 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C57%2C0:99 scaffold1901 SAMTools SNP 304656 304656 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C3%2C121%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.26%2C2.3e-192%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold1901 SAMTools SNP 306233 306233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C51%3BMQ%3D50%3BFQ%3D-156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold1901 SAMTools SNP 306482 306482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C10%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold1901 SAMTools SNP 306844 306844 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold1901 SAMTools SNP 307057 307057 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 307834 307834 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C14%2C9%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C3.3e-46%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold1901 SAMTools SNP 308351 308351 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.69%2C8.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold1901 SAMTools SNP 308788 308788 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 308860 308860 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 308986 308986 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 309109 309109 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.7%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold1901 SAMTools SNP 309303 309303 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 309404 309404 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C33%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.1%2C2.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C209:39 scaffold1901 SAMTools SNP 309519 309519 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1901 SAMTools SNP 313644 313644 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C157:44 scaffold1901 SAMTools SNP 318487 318487 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C39%2C0:75 scaffold1901 SAMTools SNP 319857 319857 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 319866 319866 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold1901 SAMTools SNP 321047 321047 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold1901 SAMTools SNP 321941 321941 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold1901 SAMTools SNP 322333 322333 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold1901 SAMTools SNP 323234 323234 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 323573 323573 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C0.099%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold1901 SAMTools SNP 324202 324202 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold1901 SAMTools SNP 324240 324240 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1901 SAMTools SNP 325316 325316 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 326696 326696 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold1901 SAMTools SNP 328003 328003 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 330764 330764 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold1901 SAMTools SNP 331418 331418 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold1901 SAMTools SNP 331599 331599 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold1901 SAMTools SNP 331821 331821 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold1901 SAMTools SNP 353519 353519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold1901 SAMTools SNP 353534 353534 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D176%3BPV4%3D3.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold1901 SAMTools SNP 353564 353564 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold1901 SAMTools SNP 353624 353624 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold1901 SAMTools SNP 354159 354159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C43%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold1901 SAMTools SNP 354222 354222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C19%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold1901 SAMTools SNP 354964 354964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 354997 354997 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C29%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold1901 SAMTools SNP 355240 355240 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 355289 355289 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C2.1e-05%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 355315 355315 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 355541 355541 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold1901 SAMTools SNP 355559 355559 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.46%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold1901 SAMTools SNP 355787 355787 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold1901 SAMTools SNP 355985 355985 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold1901 SAMTools SNP 356196 356196 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold1901 SAMTools SNP 356504 356504 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 356552 356552 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C50%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 356831 356831 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C33%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 357847 357847 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C12%3BMQ%3D46%3BFQ%3D130%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold1901 SAMTools SNP 357976 357976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1901 SAMTools SNP 358021 358021 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 358072 358072 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold1901 SAMTools SNP 359712 359712 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C8%3BMQ%3D45%3BFQ%3D162%3BPV4%3D0.32%2C1%2C0.13%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C219:99 scaffold1901 SAMTools SNP 363499 363499 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 364102 364102 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold1901 SAMTools SNP 364326 364326 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold1901 SAMTools SNP 367317 367317 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold1901 SAMTools SNP 367382 367382 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 368254 368254 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1901 SAMTools SNP 368274 368274 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 368601 368601 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C225:63 scaffold1901 SAMTools SNP 372670 372670 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 373781 373781 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold1901 SAMTools SNP 374092 374092 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C3.5e-13%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C171:44 scaffold1901 SAMTools SNP 374521 374521 16.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold1901 SAMTools SNP 378004 378004 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 378263 378263 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 378340 378340 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold1901 SAMTools SNP 378392 378392 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.53%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold1901 SAMTools SNP 378665 378665 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C227:99 scaffold1901 SAMTools SNP 378701 378701 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold1901 SAMTools SNP 379336 379336 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold1901 SAMTools SNP 379639 379639 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 379674 379674 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold1901 SAMTools SNP 380218 380218 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold1901 SAMTools SNP 380657 380657 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold1901 SAMTools SNP 381128 381128 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C225:71 scaffold1901 SAMTools SNP 381191 381191 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold1901 SAMTools SNP 381696 381696 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.22%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold1901 SAMTools SNP 382479 382479 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold1901 SAMTools SNP 389417 389417 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold1901 SAMTools SNP 396858 396858 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold1901 SAMTools SNP 396869 396869 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold1901 SAMTools SNP 397014 397014 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold1901 SAMTools SNP 397051 397051 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.43%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C97:30 scaffold1901 SAMTools SNP 397202 397202 74.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold1901 SAMTools SNP 397470 397470 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold1901 SAMTools SNP 397646 397646 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 398070 398070 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold1901 SAMTools SNP 398333 398333 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.47%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C113:57 scaffold1901 SAMTools SNP 398469 398469 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C33%2C0:63 scaffold1901 SAMTools SNP 416164 416164 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 419765 419765 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold1901 SAMTools SNP 421624 421624 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold1901 SAMTools SNP 421635 421635 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 422754 422754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1901 SAMTools SNP 422784 422784 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold1901 SAMTools SNP 423765 423765 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.048%2C0.00023%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C160:62 scaffold1901 SAMTools SNP 425432 425432 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold1901 SAMTools SNP 425464 425464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 430487 430487 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 430514 430514 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 430836 430836 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold1901 SAMTools SNP 430848 430848 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold1901 SAMTools SNP 431178 431178 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold1901 SAMTools SNP 431189 431189 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold1901 SAMTools SNP 431236 431236 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold1901 SAMTools SNP 431249 431249 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.12%2C3.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C135:92 scaffold1901 SAMTools SNP 431327 431327 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold1901 SAMTools SNP 433484 433484 92.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold191 SAMTools SNP 9932 9932 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold191 SAMTools SNP 26641 26641 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold191 SAMTools SNP 31291 31291 55.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold191 SAMTools SNP 67275 67275 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C6%2C0:10 scaffold191 SAMTools SNP 67664 67664 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.45%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C172:99 scaffold191 SAMTools SNP 69556 69556 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 69952 69952 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C19%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.75%2C2.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold191 SAMTools SNP 70394 70394 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C3.9e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold191 SAMTools SNP 70408 70408 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 70871 70871 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C15%3BMQ%3D50%3BFQ%3D-168%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C141%2C0:99 scaffold191 SAMTools SNP 71424 71424 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D45%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C227:99 scaffold191 SAMTools SNP 75361 75361 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C19%2C10%3BMQ%3D22%3BFQ%3D109%3BPV4%3D1%2C0.35%2C0.4%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C137:99 scaffold191 SAMTools SNP 77608 77608 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C242:99 scaffold191 SAMTools SNP 77717 77717 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C160:75 scaffold191 SAMTools SNP 77737 77737 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold191 SAMTools SNP 79182 79182 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.38%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold191 SAMTools SNP 80233 80233 19 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold191 SAMTools SNP 81153 81153 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold191 SAMTools SNP 81265 81265 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C6.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C247:44 scaffold191 SAMTools SNP 81329 81329 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C8%2C19%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.19%2C3.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold191 SAMTools SNP 81551 81551 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C54%2C0:99 scaffold191 SAMTools SNP 82010 82010 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C11%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C0.1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold191 SAMTools SNP 82603 82603 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold191 SAMTools SNP 153607 153607 18.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold191 SAMTools SNP 162169 162169 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 195862 195862 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold191 SAMTools SNP 233119 233119 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold191 SAMTools SNP 234597 234597 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 234702 234702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 234722 234722 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 238146 238146 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 238215 238215 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 238241 238241 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 253240 253240 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold191 SAMTools SNP 253270 253270 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold191 SAMTools SNP 256038 256038 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold191 SAMTools SNP 339300 339300 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold191 SAMTools SNP 344002 344002 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold191 SAMTools SNP 344004 344004 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold191 SAMTools SNP 350692 350692 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold191 SAMTools SNP 350760 350760 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold191 SAMTools SNP 356709 356709 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold191 SAMTools SNP 360310 360310 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold191 SAMTools SNP 360346 360346 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold191 SAMTools SNP 377604 377604 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold191 SAMTools SNP 377608 377608 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold191 SAMTools SNP 378190 378190 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold191 SAMTools SNP 378232 378232 6.02 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C18%2C12%2C35%2C0%2C32:6 scaffold191 SAMTools SNP 378275 378275 59.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold191 SAMTools SNP 386556 386556 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C24%2C0:44 scaffold191 SAMTools SNP 386564 386564 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C24%2C0:36 scaffold191 SAMTools SNP 386872 386872 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold191 SAMTools SNP 386917 386917 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.025%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold191 SAMTools SNP 463438 463438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 463487 463487 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold191 SAMTools SNP 463493 463493 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold191 SAMTools SNP 464444 464444 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 466717 466717 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold191 SAMTools SNP 466729 466729 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold191 SAMTools SNP 466747 466747 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold191 SAMTools SNP 466753 466753 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold191 SAMTools SNP 468029 468029 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.23%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold191 SAMTools SNP 468051 468051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D46%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold191 SAMTools SNP 468677 468677 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C19%2C0%3BMQ%3D47%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C223:99 scaffold191 SAMTools SNP 468785 468785 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C62%2C60%2C34%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.8e-05%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 469361 469361 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C0%2C41%3BMQ%3D40%3BFQ%3D-48%3BPV4%3D0.068%2C1%2C0.46%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold191 SAMTools SNP 479322 479322 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold191 SAMTools SNP 479323 479323 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold191 SAMTools SNP 480355 480355 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold191 SAMTools SNP 480761 480761 57.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold191 SAMTools SNP 483155 483155 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold191 SAMTools SNP 484579 484579 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 484807 484807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold191 SAMTools SNP 484859 484859 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold191 SAMTools SNP 485116 485116 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold191 SAMTools SNP 485145 485145 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold191 SAMTools SNP 495865 495865 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C254:66 scaffold191 SAMTools SNP 495973 495973 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C102:99 scaffold191 SAMTools SNP 500805 500805 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold191 SAMTools SNP 500845 500845 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold191 SAMTools SNP 502039 502039 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold191 SAMTools SNP 502553 502553 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 502577 502577 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 503081 503081 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D47%3BFQ%3D77%3BPV4%3D0.17%2C1%2C0.15%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold191 SAMTools SNP 503526 503526 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold191 SAMTools SNP 504099 504099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold191 SAMTools SNP 504116 504116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold191 SAMTools SNP 504165 504165 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold191 SAMTools SNP 504836 504836 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold191 SAMTools SNP 504848 504848 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold191 SAMTools SNP 504899 504899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold191 SAMTools SNP 504929 504929 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C5%2C78%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 505454 505454 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C9%2C50%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 505975 505975 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C56%2C0%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 506249 506249 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold191 SAMTools SNP 506990 506990 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 507025 507025 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold191 SAMTools SNP 507040 507040 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold191 SAMTools SNP 507073 507073 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold191 SAMTools SNP 507366 507366 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold191 SAMTools SNP 507414 507414 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C17:20 scaffold191 SAMTools SNP 507471 507471 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold191 SAMTools SNP 508286 508286 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold191 SAMTools SNP 508291 508291 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold191 SAMTools SNP 508681 508681 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold191 SAMTools SNP 508784 508784 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold191 SAMTools SNP 512369 512369 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C37%2C1%2C44%3BMQ%3D49%3BFQ%3D120%3BPV4%3D1.9e-09%2C2.2e-13%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold191 SAMTools SNP 512979 512979 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C6%2C77%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold191 SAMTools SNP 513030 513030 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C18%2C13%3BMQ%3D34%3BFQ%3D22%3BPV4%3D0.0087%2C0.05%2C0.00068%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C126:52 scaffold191 SAMTools SNP 513054 513054 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C5%2C5%3BMQ%3D28%3BFQ%3D16.1%3BPV4%3D1%2C0.13%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C211:46 scaffold191 SAMTools SNP 513060 513060 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C9%2C5%3BMQ%3D26%3BFQ%3D37%3BPV4%3D0.48%2C0.042%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C147:67 scaffold191 SAMTools SNP 555194 555194 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold191 SAMTools SNP 555803 555803 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold191 SAMTools SNP 555825 555825 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold191 SAMTools SNP 566068 566068 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold191 SAMTools SNP 566259 566259 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 566319 566319 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold191 SAMTools SNP 566346 566346 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold191 SAMTools SNP 567874 567874 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 570471 570471 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold191 SAMTools SNP 570534 570534 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold191 SAMTools SNP 570722 570722 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 570745 570745 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 570901 570901 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 570942 570942 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold191 SAMTools SNP 571203 571203 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold191 SAMTools SNP 571285 571285 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold191 SAMTools SNP 571742 571742 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold191 SAMTools SNP 571811 571811 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 573797 573797 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold191 SAMTools SNP 573819 573819 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold191 SAMTools SNP 651646 651646 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 651647 651647 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 651751 651751 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold191 SAMTools SNP 652096 652096 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold191 SAMTools SNP 652135 652135 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold191 SAMTools SNP 652474 652474 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold191 SAMTools SNP 654120 654120 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold191 SAMTools SNP 654154 654154 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold191 SAMTools SNP 654176 654176 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold191 SAMTools SNP 655105 655105 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold191 SAMTools SNP 655112 655112 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C102:80 scaffold191 SAMTools SNP 655136 655136 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold191 SAMTools SNP 679558 679558 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D41%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C23:26 scaffold191 SAMTools SNP 679578 679578 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D40%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C0.24%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C26:29 scaffold191 SAMTools SNP 748227 748227 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold191 SAMTools SNP 748841 748841 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold191 SAMTools SNP 749110 749110 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 4378 4378 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 4428 4428 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 4465 4465 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 24162 24162 103 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C27%2C0:51 scaffold192 SAMTools SNP 24307 24307 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 24603 24603 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 24690 24690 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold192 SAMTools SNP 24718 24718 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold192 SAMTools SNP 25032 25032 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold192 SAMTools SNP 25213 25213 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold192 SAMTools SNP 25257 25257 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold192 SAMTools SNP 25263 25263 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold192 SAMTools SNP 25448 25448 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold192 SAMTools SNP 25635 25635 6.17 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold192 SAMTools SNP 25707 25707 48.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold192 SAMTools SNP 26029 26029 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C14%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.4e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C115:67 scaffold192 SAMTools SNP 26544 26544 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 46120 46120 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C48%2C0:90 scaffold192 SAMTools SNP 48599 48599 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold192 SAMTools SNP 51318 51318 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.011%2C0.0011%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold192 SAMTools SNP 55001 55001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold192 SAMTools SNP 83673 83673 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 83733 83733 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold192 SAMTools SNP 84063 84063 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold192 SAMTools SNP 87676 87676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C25%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold192 SAMTools SNP 88480 88480 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.39%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold192 SAMTools SNP 89200 89200 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.52%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold192 SAMTools SNP 90663 90663 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.13%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C124:77 scaffold192 SAMTools SNP 91285 91285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold192 SAMTools SNP 91288 91288 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold192 SAMTools SNP 91297 91297 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 91976 91976 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold192 SAMTools SNP 92087 92087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold192 SAMTools SNP 92099 92099 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold192 SAMTools SNP 95394 95394 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold192 SAMTools SNP 102428 102428 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold192 SAMTools SNP 102653 102653 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0046%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold192 SAMTools SNP 123112 123112 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold192 SAMTools SNP 137253 137253 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C35%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 137834 137834 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold192 SAMTools SNP 137883 137883 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C56%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 138300 138300 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C225:44 scaffold192 SAMTools SNP 138301 138301 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold192 SAMTools SNP 138376 138376 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold192 SAMTools SNP 138381 138381 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold192 SAMTools SNP 138550 138550 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C212:67 scaffold192 SAMTools SNP 145391 145391 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold192 SAMTools SNP 145468 145468 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C251:99 scaffold192 SAMTools SNP 152846 152846 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold192 SAMTools SNP 154433 154433 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold192 SAMTools SNP 155516 155516 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C3%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold192 SAMTools SNP 156160 156160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold192 SAMTools SNP 159322 159322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold192 SAMTools SNP 159352 159352 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold192 SAMTools SNP 159869 159869 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C16%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold192 SAMTools SNP 159884 159884 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold192 SAMTools SNP 159923 159923 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold192 SAMTools SNP 159933 159933 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 159980 159980 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold192 SAMTools SNP 160658 160658 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold192 SAMTools SNP 161497 161497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 165045 165045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C3.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 165487 165487 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.041%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold192 SAMTools SNP 165496 165496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold192 SAMTools SNP 165664 165664 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold192 SAMTools SNP 165885 165885 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold192 SAMTools SNP 165939 165939 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold192 SAMTools SNP 166239 166239 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.62%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold192 SAMTools SNP 166278 166278 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.61%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold192 SAMTools SNP 167513 167513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold192 SAMTools SNP 167785 167785 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C31%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold192 SAMTools SNP 168163 168163 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.18%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold192 SAMTools SNP 168208 168208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold192 SAMTools SNP 168247 168247 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold192 SAMTools SNP 168441 168441 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 168478 168478 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 168667 168667 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold192 SAMTools SNP 168670 168670 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold192 SAMTools SNP 169027 169027 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0048%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold192 SAMTools SNP 169028 169028 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold192 SAMTools SNP 169182 169182 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 170589 170589 202 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C146%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0%2C235%2C255%2C232:99 scaffold192 SAMTools SNP 170736 170736 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C50%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 171051 171051 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold192 SAMTools SNP 171111 171111 169 . . REF=A;ALT=G,T,C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C105%2C0%2C191%2C79%2C188%2C200%2C89%2C187%2C197:99 scaffold192 SAMTools SNP 171360 171360 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold192 SAMTools SNP 171411 171411 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C210:94 scaffold192 SAMTools SNP 171432 171432 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold192 SAMTools SNP 171435 171435 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.021%2C5.6e-08%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C234:56 scaffold192 SAMTools SNP 171839 171839 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold192 SAMTools SNP 172260 172260 79.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold192 SAMTools SNP 172368 172368 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 172387 172387 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold192 SAMTools SNP 174324 174324 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold192 SAMTools SNP 176367 176367 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold192 SAMTools SNP 177475 177475 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C5%2C63%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 177476 177476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C15%2C83%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 177775 177775 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold192 SAMTools SNP 177779 177779 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold192 SAMTools SNP 178214 178214 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold192 SAMTools SNP 178629 178629 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 178728 178728 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C234:99 scaffold192 SAMTools SNP 178752 178752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold192 SAMTools SNP 178968 178968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C0%2C50%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 179118 179118 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C54%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 179710 179710 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C236:99 scaffold192 SAMTools SNP 179915 179915 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold192 SAMTools SNP 179925 179925 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 180069 180069 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold192 SAMTools SNP 180985 180985 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C18%2C12%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.03%2C1%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold192 SAMTools SNP 181253 181253 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C38%2C41%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D6.5e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold192 SAMTools SNP 181708 181708 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C56%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 181729 181729 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C47%2C8%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.028%2C0.48%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold192 SAMTools SNP 181807 181807 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C6%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold192 SAMTools SNP 183525 183525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 184421 184421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold192 SAMTools SNP 184523 184523 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C156:43 scaffold192 SAMTools SNP 184635 184635 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C39%2C0:75 scaffold192 SAMTools SNP 185028 185028 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.025%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C55:28 scaffold192 SAMTools SNP 185068 185068 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C164:51 scaffold192 SAMTools SNP 188218 188218 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold192 SAMTools SNP 188262 188262 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold192 SAMTools SNP 188266 188266 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold192 SAMTools SNP 189934 189934 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold192 SAMTools SNP 190114 190114 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 190141 190141 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold192 SAMTools SNP 191244 191244 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold192 SAMTools SNP 191260 191260 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.031%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold192 SAMTools SNP 194351 194351 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C1%2C28%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0028%2C3.1e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold192 SAMTools SNP 194606 194606 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C14%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.0044%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold192 SAMTools SNP 194609 194609 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C0%2C17%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.014%2C0.041%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold192 SAMTools SNP 194995 194995 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C17%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 195252 195252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C0.34%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 195255 195255 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 195351 195351 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C30%2C0:57 scaffold192 SAMTools SNP 195399 195399 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C29%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 195608 195608 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C48%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold192 SAMTools SNP 195613 195613 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.65%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold192 SAMTools SNP 195641 195641 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-05%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 196312 196312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 196321 196321 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C20%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C8.4e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold192 SAMTools SNP 196378 196378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 196720 196720 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C81%2C29%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.27%2C7.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold192 SAMTools SNP 196759 196759 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C33%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C202%2C0:99 scaffold192 SAMTools SNP 196771 196771 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 197413 197413 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C42%2C9%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1.2e-05%2C1.1e-09%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold192 SAMTools SNP 197796 197796 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold192 SAMTools SNP 198010 198010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C44%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C2.5e-16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 198270 198270 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 199159 199159 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold192 SAMTools SNP 199288 199288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold192 SAMTools SNP 199293 199293 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C11%2C15%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.1%2C1%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold192 SAMTools SNP 200177 200177 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C35%2C54%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 200210 200210 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 200641 200641 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 200677 200677 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 200680 200680 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 201425 201425 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold192 SAMTools SNP 201811 201811 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold192 SAMTools SNP 201826 201826 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold192 SAMTools SNP 202156 202156 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C5%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.31%2C5.3e-15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold192 SAMTools SNP 202225 202225 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold192 SAMTools SNP 202243 202243 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold192 SAMTools SNP 202485 202485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.34%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 202786 202786 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C28%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D9.1e-06%2C0.0014%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold192 SAMTools SNP 202918 202918 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold192 SAMTools SNP 202949 202949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold192 SAMTools SNP 203588 203588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 204370 204370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C15%3BMQ%3D50%3BFQ%3D-132%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold192 SAMTools SNP 204400 204400 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold192 SAMTools SNP 204979 204979 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.59%2C0.13%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold192 SAMTools SNP 205033 205033 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold192 SAMTools SNP 205635 205635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 205826 205826 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.28%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 205870 205870 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 207665 207665 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C50%2C12%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D7.4e-08%2C1%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold192 SAMTools SNP 208052 208052 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C94%2C0%2C93%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.5%2C0.092%2C1%2C7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C224:99 scaffold192 SAMTools SNP 216650 216650 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 224779 224779 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.46%3BPV4%3D1%2C9.9e-11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C23:26 scaffold192 SAMTools SNP 225885 225885 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold192 SAMTools SNP 225978 225978 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold192 SAMTools SNP 226008 226008 25.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold192 SAMTools SNP 226196 226196 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C22:25 scaffold192 SAMTools SNP 226925 226925 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold192 SAMTools SNP 227323 227323 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 234261 234261 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold192 SAMTools SNP 234485 234485 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold192 SAMTools SNP 252671 252671 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold192 SAMTools SNP 252694 252694 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.17%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C206:95 scaffold192 SAMTools SNP 252894 252894 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 253196 253196 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C172%2C21%2C26%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold192 SAMTools SNP 253364 253364 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C3%2C0%3BMQ%3D40%3BFQ%3D8.65%3BPV4%3D0.044%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold192 SAMTools SNP 254038 254038 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C229%2C18%2C30%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold192 SAMTools SNP 254197 254197 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C215%2C4%2C79%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.13%2C2.8e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold192 SAMTools SNP 263470 263470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold192 SAMTools SNP 263472 263472 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold192 SAMTools SNP 265624 265624 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold192 SAMTools SNP 271503 271503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold192 SAMTools SNP 320639 320639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C24%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 321427 321427 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 322574 322574 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C83%2C1%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 323120 323120 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C29%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00073%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold192 SAMTools SNP 324595 324595 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C33%2C0:63 scaffold192 SAMTools SNP 325112 325112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold192 SAMTools SNP 325113 325113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold192 SAMTools SNP 326477 326477 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.36%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 326504 326504 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold192 SAMTools SNP 329997 329997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold192 SAMTools SNP 330595 330595 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 332545 332545 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold192 SAMTools SNP 333213 333213 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.031%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C236:99 scaffold192 SAMTools SNP 334876 334876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C36%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold192 SAMTools SNP 335031 335031 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold192 SAMTools SNP 347780 347780 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold192 SAMTools SNP 353987 353987 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C66%2C0:99 scaffold192 SAMTools SNP 354091 354091 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold192 SAMTools SNP 361599 361599 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C27%2C23%2C23%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C8e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold192 SAMTools SNP 362377 362377 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold192 SAMTools SNP 374939 374939 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2148%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1547%2C40%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 374972 374972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2065%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1515%2C549%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.49%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 375722 375722 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D930%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D266%2C138%2C353%2C169%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C7.7e-93%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 375743 375743 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D659%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D340%2C35%2C249%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C7.3e-168%2C0.14%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 376148 376148 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D875%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D201%2C339%2C77%2C253%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C0.097%2C0.037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 376187 376187 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D812%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C399%2C46%2C255%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.00018%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 376361 376361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C310%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 376379 376379 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C194%2C41%2C50%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.55%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold192 SAMTools SNP 376913 376913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1497%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 377033 377033 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1399%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C133%2C1213%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0001%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 377042 377042 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1442%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C879%2C46%2C359%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 377404 377404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C75%2C55%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 377866 377866 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C127%2C57%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 377906 377906 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C91%2C88%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1.9e-59;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 378604 378604 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C156%2C111%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-15%2C1%2C1%2C2.3e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 378611 378611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C180%2C30%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.0021%2C1%2C1.3e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 378905 378905 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C215%2C0%2C172%3BMQ%3D50%3BFQ%3D151%3BPV4%3D4.3e-26%2C8.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold192 SAMTools SNP 378969 378969 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C158%2C0%2C100%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1e-16%2C1%2C1%2C1.2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold192 SAMTools SNP 379034 379034 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D939%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D502%2C82%2C347%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-10%2C1%2C1%2C1e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 379974 379974 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D988%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C478%2C0%2C375%3BMQ%3D50%3BFQ%3D207%3BPV4%3D5.1e-31%2C1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold192 SAMTools SNP 380010 380010 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C103%2C120%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 380893 380893 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D897%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D494%2C156%2C247%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D5.2e-25%2C6.9e-192%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold192 SAMTools SNP 381046 381046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C466%2C499%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.063%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 381885 381885 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1270%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C962%2C182%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 381897 381897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D883%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C218%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 382304 382304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D652%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C274%2C20%2C259%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C5.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 382343 382343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 382881 382881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C63%2C5%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 384163 384163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2590%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D323%2C887%2C81%2C314%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C2.4e-12%2C1%2C4.6e-47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 384641 384641 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C157%2C28%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 384851 384851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C43%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold192 SAMTools SNP 385266 385266 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0044%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold192 SAMTools SNP 385269 385269 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold192 SAMTools SNP 385488 385488 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C33%2C0:63 scaffold192 SAMTools SNP 386007 386007 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 386158 386158 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C81%2C0:99 scaffold192 SAMTools SNP 386236 386236 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C158%2C31%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 386272 386272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 386432 386432 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C55%2C15%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 387038 387038 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C278%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 387044 387044 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C278%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 387584 387584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D644%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C535%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 390952 390952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 392104 392104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C122%2C33%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.44%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 392669 392669 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold192 SAMTools SNP 392735 392735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 392750 392750 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C43%2C36%3BMQ%3D50%3BFQ%3D-162%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold192 SAMTools SNP 393072 393072 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C128%2C15%2C141%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 393117 393117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C16%2C249%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.12%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 393150 393150 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C0%2C11%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.18%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold192 SAMTools SNP 393177 393177 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold192 SAMTools SNP 393638 393638 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold192 SAMTools SNP 393788 393788 90 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C47%2C23%2C108%2C0%2C105:45 scaffold192 SAMTools SNP 393797 393797 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D577%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D302%2C82%2C134%2C56%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.038%2C5.8e-181%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold192 SAMTools SNP 394154 394154 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C294%2C46%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 394845 394845 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D488%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C120%2C15%2C54%3BMQ%3D50%3BFQ%3D30%3BPV4%3D3.4e-09%2C0.03%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold192 SAMTools SNP 394846 394846 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C119%2C18%2C58%3BMQ%3D50%3BFQ%3D74%3BPV4%3D7.3e-09%2C0.069%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold192 SAMTools SNP 395329 395329 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C12%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 395518 395518 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold192 SAMTools SNP 395769 395769 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C180%2C1%2C199%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 395778 395778 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C207%2C24%2C195%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C0.0019%2C1%2C7.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 396174 396174 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C130%2C106%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1e-26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 397025 397025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C109%2C123%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 397070 397070 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C221%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 397161 397161 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 397448 397448 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold192 SAMTools SNP 397541 397541 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D61%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C9.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C219:28 scaffold192 SAMTools SNP 397580 397580 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C33%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C4.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 397614 397614 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C81%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 397936 397936 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 397954 397954 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C75%2C6%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D2.1e-05%2C4.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold192 SAMTools SNP 397987 397987 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C2%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold192 SAMTools SNP 397999 397999 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C23%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold192 SAMTools SNP 398020 398020 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold192 SAMTools SNP 398384 398384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D756%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C453%2C45%2C223%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-07%2C0.00038%2C1%2C2.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 398684 398684 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D570%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C361%2C19%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 398752 398752 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 399644 399644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C5%2C154%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 399682 399682 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C61%2C40%2C24%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.16%2C6.5e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold192 SAMTools SNP 399704 399704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C72%2C115%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 399764 399764 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C134%2C1%2C45%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold192 SAMTools SNP 400562 400562 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C2%2C0:5 scaffold192 SAMTools SNP 401059 401059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D429%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C234%2C1%2C176%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 401373 401373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C17%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold192 SAMTools SNP 401430 401430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C17%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold192 SAMTools SNP 401597 401597 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C41%2C10%2C8%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.094%2C0.26%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold192 SAMTools SNP 401598 401598 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C42%2C10%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.099%2C0.021%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold192 SAMTools SNP 401799 401799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C122%2C30%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold192 SAMTools SNP 402830 402830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold192 SAMTools SNP 402842 402842 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold192 SAMTools SNP 402959 402959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C112%3BMQ%3D50%3BFQ%3D-279%3BPV4%3D0.00046%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C252%2C0:99 scaffold192 SAMTools SNP 403788 403788 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 404441 404441 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 404531 404531 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold192 SAMTools SNP 404537 404537 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold192 SAMTools SNP 404594 404594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 405323 405323 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C1%2C19%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.29%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C249:99 scaffold192 SAMTools SNP 405338 405338 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C1%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.28%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C245:99 scaffold192 SAMTools SNP 405404 405404 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.19%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold192 SAMTools SNP 405842 405842 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold192 SAMTools SNP 406013 406013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold192 SAMTools SNP 406025 406025 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold192 SAMTools SNP 406898 406898 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0169%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-3.02%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C27:30 scaffold192 SAMTools SNP 407373 407373 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C56%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 407878 407878 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C129%2C0:99 scaffold192 SAMTools SNP 408666 408666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold192 SAMTools SNP 408668 408668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C50%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold192 SAMTools SNP 409189 409189 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 409240 409240 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 409559 409559 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 409667 409667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 410044 410044 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C56%2C11%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 410178 410178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C61%2C6%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 411064 411064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C37%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 411175 411175 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C3%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.013%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold192 SAMTools SNP 411181 411181 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-08%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 411405 411405 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold192 SAMTools SNP 411447 411447 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold192 SAMTools SNP 411764 411764 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C13%2C48%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.25%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 412006 412006 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C20%2C17%2C10%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.81%2C1.1e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold192 SAMTools SNP 412641 412641 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C36%2C0:68 scaffold192 SAMTools SNP 412698 412698 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold192 SAMTools SNP 413709 413709 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C376%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 425667 425667 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C218%2C56%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 425793 425793 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C26%2C86%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1e-13%2C0.44%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold192 SAMTools SNP 426291 426291 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 426305 426305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C43%2C53%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.017%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 426357 426357 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C66%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 426619 426619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold192 SAMTools SNP 426628 426628 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold192 SAMTools SNP 431426 431426 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C20%2C0%2C9%3BMQ%3D47%3BFQ%3D75%3BPV4%3D0.00058%2C0.47%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold192 SAMTools SNP 432523 432523 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C20%2C13%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.29%2C1%2C0.36%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 432621 432621 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C55%2C22%3BMQ%3D48%3BFQ%3D214%3BPV4%3D0.0097%2C4.4e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold192 SAMTools SNP 432939 432939 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C68%2C59%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D5.5e-06%2C0.002%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold192 SAMTools SNP 432945 432945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 432966 432966 195 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C62%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C214%2C0%2C224%2C192%2C221:99 scaffold192 SAMTools SNP 433005 433005 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C132%2C27%2C57%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.025%2C3.5e-167%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold192 SAMTools SNP 433527 433527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C25%2C130%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 433677 433677 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C25%2C45%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 433921 433921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C24%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 434206 434206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C45%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 434241 434241 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C20%2C14%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold192 SAMTools SNP 434883 434883 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C53%2C11%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 434970 434970 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold192 SAMTools SNP 435611 435611 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold192 SAMTools SNP 435792 435792 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C11%2C21%3BMQ%3D28%3BFQ%3D-53%3BPV4%3D0.023%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C26%2C0:49 scaffold192 SAMTools SNP 436470 436470 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C53%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 436494 436494 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C55%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 436506 436506 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 437762 437762 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C184%2C17%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 438157 438157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C117%2C22%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 438208 438208 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 438814 438814 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 438829 438829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold192 SAMTools SNP 438853 438853 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold192 SAMTools SNP 439218 439218 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D229%2C22%2C113%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00045%2C1.6e-23%2C1%2C1.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold192 SAMTools SNP 439269 439269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C332%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 439558 439558 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold192 SAMTools SNP 440713 440713 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C70%2C1%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.69%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold192 SAMTools SNP 442324 442324 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D676%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C650%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 442754 442754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C29%2C39%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00078%2C0.043%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 443021 443021 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C5%2C0%2C52%3BMQ%3D50%3BFQ%3D59%3BPV4%3D6.8e-25%2C1.5e-48%2C1%2C1.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold192 SAMTools SNP 443201 443201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold192 SAMTools SNP 443399 443399 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C62%2C91%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-19%2C0.023%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 443608 443608 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C85%2C49%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D6.8e-25%2C3e-15%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold192 SAMTools SNP 443609 443609 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C91%2C39%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1.9e-18%2C5.5e-21%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold192 SAMTools SNP 443627 443627 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C82%2C24%2C93%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1.5e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold192 SAMTools SNP 443739 443739 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C25%2C3%2C24%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.00013%2C1.3e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold192 SAMTools SNP 444152 444152 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C26:29 scaffold192 SAMTools SNP 444353 444353 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold192 SAMTools SNP 444540 444540 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.087%2C0.094%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold192 SAMTools SNP 445595 445595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold192 SAMTools SNP 445669 445669 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D93.4%3BPV4%3D1%2C1.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C129:99 scaffold192 SAMTools SNP 445697 445697 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold192 SAMTools SNP 447145 447145 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.63%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold192 SAMTools SNP 447190 447190 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C228:58 scaffold192 SAMTools SNP 447247 447247 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C4%2C12%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.4%2C5.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold192 SAMTools SNP 447423 447423 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C229:99 scaffold192 SAMTools SNP 452715 452715 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold192 SAMTools SNP 453339 453339 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold192 SAMTools SNP 455544 455544 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold192 SAMTools SNP 455640 455640 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold192 SAMTools SNP 456138 456138 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold192 SAMTools SNP 456147 456147 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold192 SAMTools SNP 456301 456301 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold192 SAMTools SNP 461788 461788 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C220:99 scaffold192 SAMTools SNP 465162 465162 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold192 SAMTools SNP 465186 465186 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold192 SAMTools SNP 466216 466216 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 466605 466605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold192 SAMTools SNP 466987 466987 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold192 SAMTools SNP 468840 468840 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C28%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.2%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold192 SAMTools SNP 470077 470077 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold192 SAMTools SNP 470572 470572 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 470584 470584 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 471776 471776 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 471862 471862 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold192 SAMTools SNP 471891 471891 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C41:44 scaffold192 SAMTools SNP 479989 479989 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.3%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold192 SAMTools SNP 480134 480134 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 489745 489745 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 489763 489763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 504161 504161 64.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold192 SAMTools SNP 505220 505220 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold192 SAMTools SNP 505242 505242 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold192 SAMTools SNP 506157 506157 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.092%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C73:76 scaffold192 SAMTools SNP 506176 506176 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.037%2C0.34%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold192 SAMTools SNP 508896 508896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.35%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 508938 508938 140 . . REF=A;ALT=G,T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C46%2C34%2C167%2C0%2C164%2C167%2C0%2C125%2C164:21 scaffold192 SAMTools SNP 508950 508950 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C231:99 scaffold192 SAMTools SNP 509678 509678 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.36%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 510298 510298 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold192 SAMTools SNP 510343 510343 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold192 SAMTools SNP 510370 510370 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.16%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold192 SAMTools SNP 512857 512857 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.0083%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold192 SAMTools SNP 515938 515938 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 520910 520910 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold192 SAMTools SNP 521039 521039 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold192 SAMTools SNP 521043 521043 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold192 SAMTools SNP 521297 521297 41.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold192 SAMTools SNP 521327 521327 31.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold192 SAMTools SNP 521473 521473 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.045%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C107:99 scaffold192 SAMTools SNP 521528 521528 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C27%2C0:51 scaffold192 SAMTools SNP 522615 522615 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C60%2C0:99 scaffold192 SAMTools SNP 522950 522950 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 522974 522974 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold192 SAMTools SNP 523004 523004 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold192 SAMTools SNP 523418 523418 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold192 SAMTools SNP 523858 523858 6.95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold192 SAMTools SNP 524053 524053 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.8e-26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C233:39 scaffold192 SAMTools SNP 524416 524416 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C84%2C0:99 scaffold192 SAMTools SNP 526634 526634 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold192 SAMTools SNP 527212 527212 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 527217 527217 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 531368 531368 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold192 SAMTools SNP 531400 531400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1878%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1878%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 535434 535434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1925%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D941%2C1%2C982%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 535916 535916 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C9%2C11%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.00085%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold192 SAMTools SNP 537847 537847 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 537934 537934 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 538578 538578 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C12%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 539369 539369 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 540558 540558 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold192 SAMTools SNP 540559 540559 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold192 SAMTools SNP 540624 540624 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold192 SAMTools SNP 540650 540650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold192 SAMTools SNP 540657 540657 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold192 SAMTools SNP 541002 541002 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C1%2C133%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 541023 541023 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C5%2C73%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold192 SAMTools SNP 541034 541034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 541970 541970 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C127%2C105%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-49%2C0.077%2C1%2C8.1e-72;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 541982 541982 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C123%2C25%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D3e-24%2C1%2C1%2C1.4e-39;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold192 SAMTools SNP 541990 541990 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C78%2C0%2C122%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 542971 542971 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold192 SAMTools SNP 543009 543009 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold192 SAMTools SNP 543033 543033 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold192 SAMTools SNP 543150 543150 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold192 SAMTools SNP 543157 543157 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold192 SAMTools SNP 549490 549490 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 549977 549977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 550046 550046 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold192 SAMTools SNP 550136 550136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 550164 550164 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 550785 550785 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold192 SAMTools SNP 550938 550938 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C135%2C0:99 scaffold192 SAMTools SNP 551042 551042 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C53%2C2%2C14%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.61%2C1%2C1%2C2.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold192 SAMTools SNP 551325 551325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 551337 551337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C6%2C43%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 551381 551381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold192 SAMTools SNP 551427 551427 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 551445 551445 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold192 SAMTools SNP 551863 551863 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C32%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 552332 552332 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.5%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 552358 552358 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C3%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.17%2C0.47%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold192 SAMTools SNP 553342 553342 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold192 SAMTools SNP 553402 553402 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold192 SAMTools SNP 553406 553406 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold192 SAMTools SNP 614093 614093 6.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold192 SAMTools SNP 616621 616621 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 616639 616639 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 616910 616910 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold192 SAMTools SNP 617721 617721 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold192 SAMTools SNP 619582 619582 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold192 SAMTools SNP 619597 619597 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.28%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold192 SAMTools SNP 619678 619678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold192 SAMTools SNP 620227 620227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold192 SAMTools SNP 622183 622183 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold192 SAMTools SNP 622941 622941 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 672007 672007 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold192 SAMTools SNP 673755 673755 48.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold192 SAMTools SNP 687770 687770 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold192 SAMTools SNP 705918 705918 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold192 SAMTools SNP 722289 722289 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C38%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold192 SAMTools SNP 722290 722290 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C38%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold192 SAMTools SNP 732525 732525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 733161 733161 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0058%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C13%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.64%2C0.023%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold192 SAMTools SNP 735763 735763 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold192 SAMTools SNP 736051 736051 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold192 SAMTools SNP 737739 737739 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 738710 738710 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.28%2C1%2C1%2C9.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold192 SAMTools SNP 739317 739317 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D47%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C156:99 scaffold192 SAMTools SNP 739352 739352 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C14%2C0%3BMQ%3D49%3BFQ%3D125%3BPV4%3D1%2C1%2C0.26%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C152:99 scaffold192 SAMTools SNP 740390 740390 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C8%2C22%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.08%2C0.41%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold192 SAMTools SNP 740414 740414 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold192 SAMTools SNP 740940 740940 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold192 SAMTools SNP 740946 740946 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold192 SAMTools SNP 740976 740976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold192 SAMTools SNP 741313 741313 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 741872 741872 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold192 SAMTools SNP 741879 741879 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C214:99 scaffold192 SAMTools SNP 742071 742071 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 742077 742077 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 742827 742827 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0031%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold192 SAMTools SNP 742849 742849 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.55%2C0.019%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold192 SAMTools SNP 742875 742875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C0.022%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C207:99 scaffold192 SAMTools SNP 743630 743630 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C4%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold192 SAMTools SNP 743822 743822 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold192 SAMTools SNP 743885 743885 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold192 SAMTools SNP 744104 744104 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold192 SAMTools SNP 744796 744796 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C196:66 scaffold192 SAMTools SNP 746348 746348 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C0%2C11%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold192 SAMTools SNP 746641 746641 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C218:44 scaffold192 SAMTools SNP 746715 746715 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C252:99 scaffold192 SAMTools SNP 749036 749036 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.24%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C200:99 scaffold192 SAMTools SNP 750726 750726 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0018%2C4.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold192 SAMTools SNP 750831 750831 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold192 SAMTools SNP 758849 758849 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold192 SAMTools SNP 758857 758857 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold192 SAMTools SNP 759070 759070 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold192 SAMTools SNP 759512 759512 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C23%2C8%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0095%2C0.0079%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold192 SAMTools SNP 759726 759726 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C30%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C3%2C0:6 scaffold192 SAMTools SNP 764931 764931 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C88%2C50%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 765416 765416 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C64%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold192 SAMTools SNP 765775 765775 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 766588 766588 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold192 SAMTools SNP 769651 769651 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C229:51 scaffold192 SAMTools SNP 769789 769789 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C15%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold192 SAMTools SNP 769950 769950 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold192 SAMTools SNP 770037 770037 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold192 SAMTools SNP 770205 770205 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold192 SAMTools SNP 770238 770238 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold192 SAMTools SNP 770253 770253 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold192 SAMTools SNP 770274 770274 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold192 SAMTools SNP 771167 771167 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold192 SAMTools SNP 771172 771172 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold192 SAMTools SNP 771181 771181 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.33%2C0.00057%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C138:78 scaffold192 SAMTools SNP 772020 772020 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold192 SAMTools SNP 772297 772297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold192 SAMTools SNP 772316 772316 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.17%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold192 SAMTools SNP 772866 772866 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold192 SAMTools SNP 773224 773224 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C71:49 scaffold192 SAMTools SNP 773275 773275 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.36%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold192 SAMTools SNP 773389 773389 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 774076 774076 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.072%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C154:99 scaffold192 SAMTools SNP 774220 774220 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold192 SAMTools SNP 774348 774348 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold192 SAMTools SNP 774703 774703 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold192 SAMTools SNP 774707 774707 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold192 SAMTools SNP 784378 784378 20.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold192 SAMTools SNP 788454 788454 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C4.7e-10%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C127:99 scaffold192 SAMTools SNP 805355 805355 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 813259 813259 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C7.9e-07%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold192 SAMTools SNP 813473 813473 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold192 SAMTools SNP 813518 813518 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold192 SAMTools SNP 818307 818307 34.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold192 SAMTools SNP 818947 818947 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 818971 818971 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold192 SAMTools SNP 819188 819188 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold192 SAMTools SNP 819764 819764 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 819916 819916 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold192 SAMTools SNP 819937 819937 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C184:99 scaffold192 SAMTools SNP 820562 820562 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold192 SAMTools SNP 820727 820727 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold192 SAMTools SNP 820784 820784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold192 SAMTools SNP 822858 822858 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold192 SAMTools SNP 823785 823785 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold192 SAMTools SNP 824317 824317 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C249:99 scaffold192 SAMTools SNP 824332 824332 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold192 SAMTools SNP 825671 825671 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold192 SAMTools SNP 831217 831217 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold192 SAMTools SNP 832155 832155 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold192 SAMTools SNP 832163 832163 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold192 SAMTools SNP 832943 832943 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold192 SAMTools SNP 847127 847127 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold192 SAMTools SNP 847363 847363 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold193 SAMTools SNP 378 378 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold193 SAMTools SNP 423 423 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D1%2C1%2C0.11%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold193 SAMTools SNP 763 763 87.3 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C15%2C113%2C0%2C110:27 scaffold193 SAMTools SNP 774 774 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D42%3BFQ%3D13.2%3BPV4%3D0.048%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C109:42 scaffold193 SAMTools SNP 777 777 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D47%3BFQ%3D10.4%3BPV4%3D0.11%2C0.017%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C167:39 scaffold193 SAMTools SNP 1357 1357 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D41%3BFQ%3D18.1%3BPV4%3D0.47%2C0.43%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C239:48 scaffold193 SAMTools SNP 1632 1632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C14%2C49%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 5846 5846 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold193 SAMTools SNP 5941 5941 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold193 SAMTools SNP 6022 6022 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C54%2C0:99 scaffold193 SAMTools SNP 7483 7483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold193 SAMTools SNP 7510 7510 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold193 SAMTools SNP 15109 15109 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold193 SAMTools SNP 15826 15826 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C4%2C25%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.51%2C5.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold193 SAMTools SNP 15832 15832 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C2%2C23%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.68%2C8.8e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold193 SAMTools SNP 15838 15838 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C48%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C163%2C0:99 scaffold193 SAMTools SNP 19074 19074 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 19075 19075 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C0.43%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold193 SAMTools SNP 20512 20512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold193 SAMTools SNP 20524 20524 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C4%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.68%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold193 SAMTools SNP 28393 28393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.018%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 29677 29677 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold193 SAMTools SNP 30439 30439 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C19%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C3e-30%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C212:64 scaffold193 SAMTools SNP 74791 74791 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C66%2C0:99 scaffold193 SAMTools SNP 77493 77493 4.75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold193 SAMTools SNP 78008 78008 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold193 SAMTools SNP 78106 78106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold193 SAMTools SNP 78528 78528 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C127:99 scaffold193 SAMTools SNP 78651 78651 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C18%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.09%2C5.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold193 SAMTools SNP 78726 78726 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C13%2C36%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.35%2C2e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold193 SAMTools SNP 78948 78948 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold193 SAMTools SNP 79104 79104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C48%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold193 SAMTools SNP 79179 79179 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C0%2C15%3BMQ%3D50%3BFQ%3D25%3BPV4%3D4.9e-06%2C9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold193 SAMTools SNP 80264 80264 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold193 SAMTools SNP 81894 81894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D43%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold193 SAMTools SNP 82300 82300 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C15%2C9%2C2%3BMQ%3D37%3BFQ%3D142%3BPV4%3D0.71%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold193 SAMTools SNP 82308 82308 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C15%3BMQ%3D45%3BFQ%3D58%3BPV4%3D5.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C85:88 scaffold193 SAMTools SNP 82665 82665 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D41%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold193 SAMTools SNP 82692 82692 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C13%3BMQ%3D34%3BFQ%3D96%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C192:99 scaffold193 SAMTools SNP 82993 82993 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C19%3BMQ%3D29%3BFQ%3D96%3BPV4%3D1%2C0.25%2C0.21%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C189:99 scaffold193 SAMTools SNP 83029 83029 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 89775 89775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C242%2C10%2C165%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 90272 90272 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold193 SAMTools SNP 90293 90293 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C23%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold193 SAMTools SNP 90701 90701 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.092%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 92191 92191 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold193 SAMTools SNP 92245 92245 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0174%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold193 SAMTools SNP 92810 92810 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.042%2C3.6e-08%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold193 SAMTools SNP 92824 92824 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C12%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.52%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold193 SAMTools SNP 93515 93515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C23%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1.3e-05%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold193 SAMTools SNP 93541 93541 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D112%3BPV4%3D3.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold193 SAMTools SNP 93899 93899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold193 SAMTools SNP 93920 93920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C20%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold193 SAMTools SNP 93968 93968 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C155%2C21%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold193 SAMTools SNP 94560 94560 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C19%2C67%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.017%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold193 SAMTools SNP 94626 94626 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C167%2C8%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.0021%2C1%2C8.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 94641 94641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold193 SAMTools SNP 95206 95206 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C42%2C19%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 95229 95229 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C27%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold193 SAMTools SNP 95626 95626 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold193 SAMTools SNP 103068 103068 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.2%2C0.00054%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C227:54 scaffold193 SAMTools SNP 103080 103080 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.51%2C0.0061%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold193 SAMTools SNP 103231 103231 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold193 SAMTools SNP 103342 103342 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold193 SAMTools SNP 104440 104440 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 109202 109202 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold193 SAMTools SNP 109227 109227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 111843 111843 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C115:99 scaffold193 SAMTools SNP 111858 111858 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold193 SAMTools SNP 111933 111933 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.021%2C0.089%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C252:99 scaffold193 SAMTools SNP 114758 114758 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold193 SAMTools SNP 114821 114821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold193 SAMTools SNP 114830 114830 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold193 SAMTools SNP 115185 115185 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 116392 116392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C2%2C23%3BMQ%3D47%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold193 SAMTools SNP 116428 116428 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold193 SAMTools SNP 116836 116836 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C3%3BMQ%3D48%3BFQ%3D161%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold193 SAMTools SNP 117279 117279 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold193 SAMTools SNP 126581 126581 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.2e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C224:37 scaffold193 SAMTools SNP 128124 128124 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C42%2C0:81 scaffold193 SAMTools SNP 128780 128780 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.012%2C4.7e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold193 SAMTools SNP 130464 130464 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C36%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C3.1e-10%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 131009 131009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 131433 131433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C46%2C7%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 133762 133762 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C8%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold193 SAMTools SNP 134400 134400 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.041%2C9.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold193 SAMTools SNP 134714 134714 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C9%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.0014%2C6.6e-08%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold193 SAMTools SNP 138988 138988 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 139045 139045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 142359 142359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C33%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.42%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 142400 142400 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C13%2C9%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.31%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold193 SAMTools SNP 144295 144295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C13%2C97%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 146838 146838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C73%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold193 SAMTools SNP 154766 154766 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold193 SAMTools SNP 155413 155413 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.5e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold193 SAMTools SNP 161696 161696 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C10%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C8.1e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold193 SAMTools SNP 161730 161730 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3e-05%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C233:49 scaffold193 SAMTools SNP 161888 161888 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.54%2C0.041%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold193 SAMTools SNP 171579 171579 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold193 SAMTools SNP 181636 181636 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 182595 182595 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 183585 183585 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold193 SAMTools SNP 184409 184409 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold193 SAMTools SNP 185972 185972 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 189603 189603 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold193 SAMTools SNP 194777 194777 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold193 SAMTools SNP 205613 205613 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C42%2C0:81 scaffold193 SAMTools SNP 207398 207398 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 208375 208375 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 209012 209012 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold193 SAMTools SNP 211480 211480 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold193 SAMTools SNP 211814 211814 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold193 SAMTools SNP 212938 212938 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold193 SAMTools SNP 213392 213392 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold193 SAMTools SNP 215545 215545 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C42%2C0%2C14%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0036%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold193 SAMTools SNP 216504 216504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C26%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 217096 217096 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold193 SAMTools SNP 217272 217272 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold193 SAMTools SNP 217281 217281 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C195:99 scaffold193 SAMTools SNP 217314 217314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold193 SAMTools SNP 217332 217332 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.031%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold193 SAMTools SNP 217703 217703 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.17%2C0.19%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold193 SAMTools SNP 218035 218035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C34%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold193 SAMTools SNP 218074 218074 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C13%2C11%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.68%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold193 SAMTools SNP 218266 218266 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C9%2C12%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.63%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold193 SAMTools SNP 218864 218864 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C21%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D5.6e-06%2C1%2C1%2C2.3e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold193 SAMTools SNP 219195 219195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold193 SAMTools SNP 219218 219218 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold193 SAMTools SNP 219292 219292 39.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold193 SAMTools SNP 222570 222570 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C1%2C12%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.41%2C8.4e-11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold193 SAMTools SNP 222837 222837 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.29%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold193 SAMTools SNP 222891 222891 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold193 SAMTools SNP 223153 223153 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold193 SAMTools SNP 225141 225141 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 225854 225854 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold193 SAMTools SNP 226166 226166 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold193 SAMTools SNP 226205 226205 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold193 SAMTools SNP 226862 226862 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.64%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold193 SAMTools SNP 258319 258319 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold193 SAMTools SNP 258355 258355 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C34:37 scaffold193 SAMTools SNP 258394 258394 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C35:38 scaffold193 SAMTools SNP 261107 261107 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold193 SAMTools SNP 264883 264883 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold193 SAMTools SNP 264938 264938 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold193 SAMTools SNP 268077 268077 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.028%2C4.5e-25%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C129:97 scaffold193 SAMTools SNP 268316 268316 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold193 SAMTools SNP 268537 268537 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D48%3BFQ%3D29%3BPV4%3D1%2C5.7e-05%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C195:59 scaffold193 SAMTools SNP 268880 268880 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0050%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D44%3BFQ%3D6.2%3BPV4%3D1%2C2e-11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C242:31 scaffold193 SAMTools SNP 268917 268917 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C14%3BMQ%3D45%3BFQ%3D54%3BPV4%3D0.032%2C3.1e-16%2C0.11%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C162:84 scaffold193 SAMTools SNP 269207 269207 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold193 SAMTools SNP 269331 269331 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold193 SAMTools SNP 303221 303221 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.43%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C136:34 scaffold193 SAMTools SNP 304069 304069 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C39%2C0:75 scaffold193 SAMTools SNP 304272 304272 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold193 SAMTools SNP 304648 304648 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold193 SAMTools SNP 325619 325619 126 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C87%2C71%2C157%2C0%2C151:29 scaffold193 SAMTools SNP 325831 325831 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold193 SAMTools SNP 325867 325867 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold193 SAMTools SNP 326108 326108 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold193 SAMTools SNP 326197 326197 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold193 SAMTools SNP 326605 326605 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C214:63 scaffold193 SAMTools SNP 330256 330256 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold193 SAMTools SNP 330516 330516 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C33%2C0:63 scaffold193 SAMTools SNP 331213 331213 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.43%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C195:99 scaffold193 SAMTools SNP 331401 331401 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold193 SAMTools SNP 331418 331418 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.03%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold193 SAMTools SNP 332389 332389 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.00086%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C160:52 scaffold193 SAMTools SNP 336805 336805 4.85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C1%2C0:4 scaffold193 SAMTools SNP 340644 340644 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold193 SAMTools SNP 353965 353965 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C42%2C0:59 scaffold193 SAMTools SNP 354011 354011 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D38%3BFQ%3D25%3BPV4%3D1%2C0.0028%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C187:55 scaffold193 SAMTools SNP 354023 354023 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C12%3BMQ%3D32%3BFQ%3D72%3BPV4%3D0.1%2C0.35%2C0.049%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C253:99 scaffold193 SAMTools SNP 359090 359090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1088%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C406%2C111%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.7e-25%2C1%2C1%2C9.5e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 360471 360471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C38%2C25%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 361663 361663 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold193 SAMTools SNP 361688 361688 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold193 SAMTools SNP 362616 362616 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C63%2C0:99 scaffold193 SAMTools SNP 362662 362662 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C58%2C12%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.35%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 362679 362679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C43%2C36%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C7.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 362812 362812 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold193 SAMTools SNP 365062 365062 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C45%2C0:74 scaffold193 SAMTools SNP 365092 365092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C38%2C84%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 365978 365978 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C32%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold193 SAMTools SNP 370098 370098 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C246:99 scaffold193 SAMTools SNP 370875 370875 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.13%2C0.0014%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold193 SAMTools SNP 371024 371024 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.51%2C0.0055%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C244:55 scaffold193 SAMTools SNP 371593 371593 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C50:53 scaffold193 SAMTools SNP 377080 377080 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 377083 377083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 386220 386220 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.44%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold193 SAMTools SNP 386221 386221 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold193 SAMTools SNP 386281 386281 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C66%2C0:99 scaffold193 SAMTools SNP 394396 394396 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold193 SAMTools SNP 394433 394433 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold193 SAMTools SNP 395685 395685 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold193 SAMTools SNP 396117 396117 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold193 SAMTools SNP 398736 398736 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C1%2C0.097%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 398739 398739 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.25%2C1%2C0.086%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 399808 399808 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold193 SAMTools SNP 399832 399832 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold193 SAMTools SNP 399925 399925 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold193 SAMTools SNP 399943 399943 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold193 SAMTools SNP 400233 400233 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold193 SAMTools SNP 400254 400254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold193 SAMTools SNP 400509 400509 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold193 SAMTools SNP 400955 400955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold193 SAMTools SNP 401548 401548 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold193 SAMTools SNP 402398 402398 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.56%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold193 SAMTools SNP 402440 402440 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C39%2C4%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold193 SAMTools SNP 402956 402956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C19%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold193 SAMTools SNP 403540 403540 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C118:99 scaffold193 SAMTools SNP 403576 403576 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold193 SAMTools SNP 406793 406793 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C5.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C99:79 scaffold193 SAMTools SNP 406872 406872 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C68:39 scaffold193 SAMTools SNP 406941 406941 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold193 SAMTools SNP 406948 406948 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold193 SAMTools SNP 407264 407264 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold193 SAMTools SNP 407293 407293 90.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C12%2C0:21 scaffold193 SAMTools SNP 407327 407327 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.053%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C149:39 scaffold193 SAMTools SNP 408749 408749 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C214:47 scaffold193 SAMTools SNP 414469 414469 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold193 SAMTools SNP 416028 416028 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C3.4e-10%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold193 SAMTools SNP 416078 416078 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C217:28 scaffold193 SAMTools SNP 418743 418743 15.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold193 SAMTools SNP 420066 420066 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 205 205 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold194 SAMTools SNP 287 287 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.067%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold194 SAMTools SNP 296 296 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C3%3BMQ%3D46%3BFQ%3D114%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C190:99 scaffold194 SAMTools SNP 1363 1363 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C21:24 scaffold194 SAMTools SNP 2031 2031 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold194 SAMTools SNP 2055 2055 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold194 SAMTools SNP 2193 2193 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 2229 2229 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold194 SAMTools SNP 2405 2405 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold194 SAMTools SNP 2437 2437 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold194 SAMTools SNP 2567 2567 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 2595 2595 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold194 SAMTools SNP 2635 2635 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold194 SAMTools SNP 2966 2966 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 2978 2978 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold194 SAMTools SNP 2982 2982 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold194 SAMTools SNP 3170 3170 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold194 SAMTools SNP 6171 6171 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold194 SAMTools SNP 6200 6200 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold194 SAMTools SNP 32881 32881 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D79.7%3BPV4%3D1%2C0.0051%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C107:99 scaffold194 SAMTools SNP 33232 33232 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold194 SAMTools SNP 33593 33593 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold194 SAMTools SNP 33611 33611 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold194 SAMTools SNP 35430 35430 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold194 SAMTools SNP 35607 35607 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold194 SAMTools SNP 35609 35609 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold194 SAMTools SNP 36592 36592 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 37242 37242 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold194 SAMTools SNP 38838 38838 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold194 SAMTools SNP 43672 43672 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold194 SAMTools SNP 44214 44214 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold194 SAMTools SNP 44421 44421 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 50878 50878 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold194 SAMTools SNP 51685 51685 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold194 SAMTools SNP 53011 53011 43.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold194 SAMTools SNP 53137 53137 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold194 SAMTools SNP 53282 53282 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 54501 54501 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold194 SAMTools SNP 54727 54727 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C238:66 scaffold194 SAMTools SNP 56356 56356 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold194 SAMTools SNP 58913 58913 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold194 SAMTools SNP 59366 59366 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold194 SAMTools SNP 61550 61550 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold194 SAMTools SNP 62058 62058 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold194 SAMTools SNP 62774 62774 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold194 SAMTools SNP 62813 62813 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 63566 63566 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold194 SAMTools SNP 84743 84743 4.11 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold194 SAMTools SNP 88090 88090 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold194 SAMTools SNP 88169 88169 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C8.4e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold194 SAMTools SNP 89574 89574 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold194 SAMTools SNP 114773 114773 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C138:49 scaffold194 SAMTools SNP 114963 114963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold194 SAMTools SNP 116747 116747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold194 SAMTools SNP 118711 118711 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold194 SAMTools SNP 118810 118810 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold194 SAMTools SNP 119049 119049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold194 SAMTools SNP 121492 121492 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D31%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C48%2C0:93 scaffold194 SAMTools SNP 121794 121794 65.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold194 SAMTools SNP 128938 128938 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold194 SAMTools SNP 130401 130401 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold194 SAMTools SNP 131022 131022 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold194 SAMTools SNP 143380 143380 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D0.25%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold194 SAMTools SNP 143432 143432 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.11%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold194 SAMTools SNP 143519 143519 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C5.9e-13%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold194 SAMTools SNP 144326 144326 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold194 SAMTools SNP 144334 144334 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold194 SAMTools SNP 144377 144377 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold194 SAMTools SNP 147080 147080 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C142:99 scaffold194 SAMTools SNP 147148 147148 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold194 SAMTools SNP 147571 147571 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold194 SAMTools SNP 147654 147654 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold194 SAMTools SNP 147934 147934 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold194 SAMTools SNP 148015 148015 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold194 SAMTools SNP 148027 148027 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold194 SAMTools SNP 148270 148270 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.12%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C195:99 scaffold194 SAMTools SNP 148390 148390 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold194 SAMTools SNP 152022 152022 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.017%2C0.078%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold194 SAMTools SNP 156542 156542 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold194 SAMTools SNP 156552 156552 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold194 SAMTools SNP 157875 157875 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold194 SAMTools SNP 157887 157887 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold194 SAMTools SNP 160163 160163 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold194 SAMTools SNP 160182 160182 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0046%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold194 SAMTools SNP 160197 160197 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold194 SAMTools SNP 160667 160667 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold194 SAMTools SNP 160947 160947 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold194 SAMTools SNP 161919 161919 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold194 SAMTools SNP 161956 161956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold194 SAMTools SNP 161992 161992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold194 SAMTools SNP 162744 162744 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0017%2C0.29%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold194 SAMTools SNP 163573 163573 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C155:36 scaffold194 SAMTools SNP 164782 164782 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold194 SAMTools SNP 164820 164820 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 164848 164848 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 164849 164849 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 164864 164864 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold194 SAMTools SNP 172504 172504 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D39%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C39%2C0:75 scaffold194 SAMTools SNP 197090 197090 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.4%2C0.059%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C68:42 scaffold194 SAMTools SNP 197529 197529 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C51%2C0:84 scaffold194 SAMTools SNP 199752 199752 18.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold194 SAMTools SNP 201055 201055 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold194 SAMTools SNP 201855 201855 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold194 SAMTools SNP 250572 250572 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C236:99 scaffold194 SAMTools SNP 252712 252712 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold194 SAMTools SNP 252713 252713 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.59%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold194 SAMTools SNP 252725 252725 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.26%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold194 SAMTools SNP 252735 252735 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.011%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold194 SAMTools SNP 252744 252744 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.54%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold194 SAMTools SNP 253531 253531 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold194 SAMTools SNP 253669 253669 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C4.5e-13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C96:58 scaffold198 SAMTools SNP 9312 9312 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.099%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C171:39 scaffold198 SAMTools SNP 9340 9340 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 9951 9951 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 9961 9961 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 9966 9966 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 43549 43549 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C7%2C80%2C3%3BMQ%3D20%3BFQ%3D170%3BPV4%3D0.75%2C7.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold198 SAMTools SNP 48054 48054 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold198 SAMTools SNP 58961 58961 35 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C23%2C14%2C64%2C0%2C61:16 scaffold198 SAMTools SNP 59769 59769 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 62321 62321 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold198 SAMTools SNP 75853 75853 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold198 SAMTools SNP 77777 77777 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold198 SAMTools SNP 78475 78475 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C30%2C0:57 scaffold198 SAMTools SNP 104496 104496 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold198 SAMTools SNP 105596 105596 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold198 SAMTools SNP 105975 105975 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C3%2C9%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.36%2C6.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold198 SAMTools SNP 106012 106012 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.58%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold198 SAMTools SNP 106230 106230 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C48%2C0:93 scaffold198 SAMTools SNP 106806 106806 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C123%2C0:99 scaffold198 SAMTools SNP 112040 112040 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold198 SAMTools SNP 112324 112324 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C0%2C22%3BMQ%3D47%3BFQ%3D-69%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 112967 112967 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 128539 128539 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold198 SAMTools SNP 145730 145730 66.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C10%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C3.2e-11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C5:8 scaffold198 SAMTools SNP 145763 145763 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C27%2C0:51 scaffold198 SAMTools SNP 155568 155568 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 156884 156884 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 156968 156968 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold198 SAMTools SNP 157965 157965 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 163035 163035 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 163468 163468 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 163652 163652 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold198 SAMTools SNP 163715 163715 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold198 SAMTools SNP 220052 220052 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold198 SAMTools SNP 224272 224272 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold198 SAMTools SNP 242831 242831 97.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C18%2C0:33 scaffold198 SAMTools SNP 243520 243520 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold198 SAMTools SNP 243534 243534 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C75%2C0:99 scaffold198 SAMTools SNP 247064 247064 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C36%2C0:69 scaffold198 SAMTools SNP 247177 247177 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold198 SAMTools SNP 247343 247343 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold198 SAMTools SNP 321739 321739 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 321991 321991 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold198 SAMTools SNP 328723 328723 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 328738 328738 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 332592 332592 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 332919 332919 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold198 SAMTools SNP 332925 332925 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold198 SAMTools SNP 335274 335274 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold198 SAMTools SNP 335286 335286 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold198 SAMTools SNP 335932 335932 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold198 SAMTools SNP 335961 335961 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 335974 335974 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold198 SAMTools SNP 335998 335998 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 336668 336668 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold198 SAMTools SNP 337225 337225 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold198 SAMTools SNP 340890 340890 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 341451 341451 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold198 SAMTools SNP 341504 341504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 342363 342363 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold198 SAMTools SNP 342431 342431 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.49%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold198 SAMTools SNP 342906 342906 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold198 SAMTools SNP 342946 342946 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold198 SAMTools SNP 342963 342963 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold198 SAMTools SNP 344913 344913 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 344973 344973 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold198 SAMTools SNP 345458 345458 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.19%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold198 SAMTools SNP 345464 345464 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.2%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold198 SAMTools SNP 345963 345963 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 345984 345984 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 381082 381082 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 381687 381687 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 382344 382344 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold198 SAMTools SNP 382428 382428 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold198 SAMTools SNP 382643 382643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold198 SAMTools SNP 382955 382955 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C228:99 scaffold198 SAMTools SNP 382973 382973 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold198 SAMTools SNP 385348 385348 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 385360 385360 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 385618 385618 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold198 SAMTools SNP 412458 412458 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold198 SAMTools SNP 422890 422890 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold198 SAMTools SNP 429817 429817 5.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C1%2C0:4 scaffold198 SAMTools SNP 467494 467494 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 467512 467512 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 468936 468936 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 468963 468963 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 469092 469092 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 471008 471008 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.37%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold198 SAMTools SNP 471026 471026 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold198 SAMTools SNP 471445 471445 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold198 SAMTools SNP 471451 471451 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold198 SAMTools SNP 471454 471454 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold198 SAMTools SNP 471481 471481 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold198 SAMTools SNP 471493 471493 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold198 SAMTools SNP 477117 477117 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold198 SAMTools SNP 477171 477171 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold198 SAMTools SNP 479760 479760 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold198 SAMTools SNP 479762 479762 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold198 SAMTools SNP 479783 479783 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 480185 480185 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 482029 482029 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 482597 482597 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 483396 483396 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 483533 483533 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 484313 484313 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 485016 485016 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold198 SAMTools SNP 485320 485320 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold198 SAMTools SNP 485380 485380 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold198 SAMTools SNP 485496 485496 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 485515 485515 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold198 SAMTools SNP 485653 485653 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 486032 486032 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold198 SAMTools SNP 486486 486486 15.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold198 SAMTools SNP 489164 489164 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold198 SAMTools SNP 489190 489190 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold198 SAMTools SNP 490210 490210 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C72%2C0:99 scaffold198 SAMTools SNP 497809 497809 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00014%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold198 SAMTools SNP 519761 519761 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold198 SAMTools SNP 521860 521860 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.36%2C3.2e-07%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C189:39 scaffold198 SAMTools SNP 522067 522067 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C54%2C0:81 scaffold198 SAMTools SNP 523184 523184 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold198 SAMTools SNP 549504 549504 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold198 SAMTools SNP 551514 551514 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold198 SAMTools SNP 563781 563781 50.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold198 SAMTools SNP 577740 577740 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold198 SAMTools SNP 577800 577800 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.0037%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C142:99 scaffold198 SAMTools SNP 578031 578031 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0061%2C9.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold198 SAMTools SNP 578263 578263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 580266 580266 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C42%2C0:81 scaffold198 SAMTools SNP 581018 581018 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold198 SAMTools SNP 583552 583552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold198 SAMTools SNP 584241 584241 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C7.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C178:99 scaffold198 SAMTools SNP 625583 625583 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold198 SAMTools SNP 629713 629713 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold198 SAMTools SNP 633090 633090 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 633535 633535 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 655996 655996 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D48%3BFQ%3D60%3BPV4%3D0.1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C241:90 scaffold198 SAMTools SNP 657020 657020 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 691319 691319 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D39%3BFQ%3D-32%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C5%2C0:9 scaffold198 SAMTools SNP 692329 692329 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C10%2C4%3BMQ%3D37%3BFQ%3D88%3BPV4%3D0.00055%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C115:99 scaffold198 SAMTools SNP 693504 693504 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.26%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold198 SAMTools SNP 693819 693819 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 694265 694265 65.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C5%2C0:9 scaffold198 SAMTools SNP 696373 696373 31.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold198 SAMTools SNP 708115 708115 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C23%2C47%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 711757 711757 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C224:99 scaffold198 SAMTools SNP 713795 713795 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 737624 737624 43.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold198 SAMTools SNP 756284 756284 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 772072 772072 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 772207 772207 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold198 SAMTools SNP 776542 776542 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 776570 776570 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 782443 782443 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 782915 782915 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold198 SAMTools SNP 782931 782931 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D1%2C0.056%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C42:45 scaffold198 SAMTools SNP 783057 783057 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 783063 783063 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 787162 787162 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D0.17%2C4.1e-08%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C32:28 scaffold198 SAMTools SNP 791769 791769 93.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C21%2C0:39 scaffold198 SAMTools SNP 791793 791793 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold198 SAMTools SNP 791874 791874 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold198 SAMTools SNP 792349 792349 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold198 SAMTools SNP 792409 792409 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 792460 792460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold198 SAMTools SNP 793917 793917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold198 SAMTools SNP 793929 793929 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C12%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold198 SAMTools SNP 794156 794156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold198 SAMTools SNP 794816 794816 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold198 SAMTools SNP 794841 794841 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold198 SAMTools SNP 794870 794870 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold198 SAMTools SNP 794889 794889 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold198 SAMTools SNP 800645 800645 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.1e-14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C93:71 scaffold198 SAMTools SNP 804477 804477 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.3%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold198 SAMTools SNP 805702 805702 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold198 SAMTools SNP 805825 805825 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 806037 806037 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold198 SAMTools SNP 806088 806088 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 806127 806127 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 806365 806365 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold198 SAMTools SNP 806480 806480 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 806712 806712 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C250:99 scaffold198 SAMTools SNP 806754 806754 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold198 SAMTools SNP 806801 806801 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold198 SAMTools SNP 806811 806811 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.27%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold198 SAMTools SNP 807271 807271 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold198 SAMTools SNP 807334 807334 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 807465 807465 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold198 SAMTools SNP 807496 807496 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C33%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.15%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C125:99 scaffold198 SAMTools SNP 808374 808374 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D3.6e-05%2C9.7e-06%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C229:40 scaffold198 SAMTools SNP 808376 808376 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D3e-06%2C2.2e-08%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold198 SAMTools SNP 808554 808554 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C43%2C0%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.58%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold198 SAMTools SNP 808587 808587 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C239:99 scaffold198 SAMTools SNP 808596 808596 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold198 SAMTools SNP 810059 810059 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C1%2C28%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.00073%2C8.4e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold198 SAMTools SNP 811699 811699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 811878 811878 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C27%2C38%2C42%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.053%2C1.1e-154%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold198 SAMTools SNP 811933 811933 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D1%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C38:41 scaffold198 SAMTools SNP 812097 812097 66.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold198 SAMTools SNP 812733 812733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C185%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.19%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 812977 812977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C44%2C39%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 813061 813061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 814622 814622 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.016%2C1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold198 SAMTools SNP 814655 814655 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold198 SAMTools SNP 816794 816794 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold198 SAMTools SNP 816795 816795 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold198 SAMTools SNP 817219 817219 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C12%2C0%3BMQ%3D49%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C241:99 scaffold198 SAMTools SNP 818131 818131 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C29%3BMQ%3D43%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold198 SAMTools SNP 822395 822395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C18%2C82%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 822443 822443 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C70%2C46%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 822914 822914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C52%2C7%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 822992 822992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C15%2C25%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 823645 823645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold198 SAMTools SNP 823648 823648 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 823918 823918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 823930 823930 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C45%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 823951 823951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C12%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 823978 823978 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.1%2C1.3e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold198 SAMTools SNP 824029 824029 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C55%2C2%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold198 SAMTools SNP 824595 824595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 824912 824912 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C8%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.26%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold198 SAMTools SNP 825088 825088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C39%2C59%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 825178 825178 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C56%2C86%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 825692 825692 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 826169 826169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D531%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C97%2C171%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 834313 834313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 834619 834619 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold198 SAMTools SNP 837139 837139 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold198 SAMTools SNP 837590 837590 59.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold198 SAMTools SNP 838417 838417 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold198 SAMTools SNP 839575 839575 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C78%2C0:99 scaffold198 SAMTools SNP 840571 840571 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C63%2C0:99 scaffold198 SAMTools SNP 840613 840613 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C84%2C0:99 scaffold198 SAMTools SNP 840983 840983 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C90%2C0:99 scaffold198 SAMTools SNP 841070 841070 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold198 SAMTools SNP 857421 857421 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold198 SAMTools SNP 864864 864864 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold198 SAMTools SNP 866378 866378 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold198 SAMTools SNP 866409 866409 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold198 SAMTools SNP 866460 866460 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C251:99 scaffold198 SAMTools SNP 867668 867668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C99%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 868176 868176 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C4%2C0%3BMQ%3D33%3BFQ%3D42.2%3BPV4%3D0.019%2C0.0039%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C70:72 scaffold198 SAMTools SNP 869266 869266 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.52%2C0.42%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C207:99 scaffold198 SAMTools SNP 869570 869570 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold198 SAMTools SNP 869576 869576 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold198 SAMTools SNP 869612 869612 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold198 SAMTools SNP 869654 869654 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold198 SAMTools SNP 870008 870008 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 870071 870071 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C0:75 scaffold198 SAMTools SNP 870770 870770 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 870900 870900 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.011%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C205:99 scaffold198 SAMTools SNP 870917 870917 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 871623 871623 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C181:99 scaffold198 SAMTools SNP 871689 871689 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold198 SAMTools SNP 871707 871707 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C0.36%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold198 SAMTools SNP 871713 871713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold198 SAMTools SNP 871939 871939 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C166:99 scaffold198 SAMTools SNP 871960 871960 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 872056 872056 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.025%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold198 SAMTools SNP 872074 872074 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C7%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold198 SAMTools SNP 872098 872098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 872598 872598 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold198 SAMTools SNP 872643 872643 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold198 SAMTools SNP 873427 873427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold198 SAMTools SNP 873511 873511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C55%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold198 SAMTools SNP 874002 874002 81.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold198 SAMTools SNP 874630 874630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 874672 874672 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 875417 875417 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.33%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold198 SAMTools SNP 876588 876588 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C12%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00023%2C0.18%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold198 SAMTools SNP 876628 876628 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C69:72 scaffold198 SAMTools SNP 876629 876629 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C152:72 scaffold198 SAMTools SNP 876691 876691 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.14%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold198 SAMTools SNP 876697 876697 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold198 SAMTools SNP 876945 876945 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold198 SAMTools SNP 876997 876997 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 877003 877003 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.44%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold198 SAMTools SNP 877457 877457 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold198 SAMTools SNP 877526 877526 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 877546 877546 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C13%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.36%2C0.01%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold198 SAMTools SNP 877583 877583 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.26%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold198 SAMTools SNP 877720 877720 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.54%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold198 SAMTools SNP 877730 877730 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C166:99 scaffold198 SAMTools SNP 877769 877769 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 877805 877805 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 878318 878318 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 878423 878423 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold198 SAMTools SNP 880488 880488 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold198 SAMTools SNP 880548 880548 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C18:21 scaffold198 SAMTools SNP 880563 880563 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold198 SAMTools SNP 881075 881075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 881110 881110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 881159 881159 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.031%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 881616 881616 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C51%2C0:99 scaffold198 SAMTools SNP 882154 882154 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold198 SAMTools SNP 882268 882268 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.54%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold198 SAMTools SNP 882412 882412 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.27%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold198 SAMTools SNP 882734 882734 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C40%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 883106 883106 220 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C0%2C41%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.22%2C0.027%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold198 SAMTools SNP 883532 883532 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 884888 884888 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00067%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C220:43 scaffold198 SAMTools SNP 885226 885226 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold198 SAMTools SNP 885272 885272 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.036%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C242:99 scaffold198 SAMTools SNP 886375 886375 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold198 SAMTools SNP 886401 886401 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold198 SAMTools SNP 886405 886405 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold198 SAMTools SNP 886775 886775 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.44%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold198 SAMTools SNP 886813 886813 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C8%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold198 SAMTools SNP 886872 886872 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C19%2C16%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.37%2C9e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold198 SAMTools SNP 887031 887031 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold198 SAMTools SNP 887258 887258 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.27%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold198 SAMTools SNP 887807 887807 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold198 SAMTools SNP 888346 888346 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold198 SAMTools SNP 888719 888719 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold198 SAMTools SNP 888722 888722 17.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold198 SAMTools SNP 888723 888723 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 889038 889038 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 889519 889519 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 890358 890358 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold198 SAMTools SNP 890406 890406 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold198 SAMTools SNP 908042 908042 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold198 SAMTools SNP 908051 908051 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold198 SAMTools SNP 909534 909534 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C30%2C0:57 scaffold198 SAMTools SNP 909688 909688 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold198 SAMTools SNP 909689 909689 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 910486 910486 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold198 SAMTools SNP 910805 910805 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold198 SAMTools SNP 910828 910828 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold198 SAMTools SNP 912885 912885 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 912934 912934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C3%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold198 SAMTools SNP 914600 914600 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold198 SAMTools SNP 915503 915503 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold198 SAMTools SNP 916608 916608 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 916841 916841 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.047%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C219:53 scaffold198 SAMTools SNP 917613 917613 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.019%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold198 SAMTools SNP 918671 918671 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C39%2C0:75 scaffold198 SAMTools SNP 919048 919048 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D953%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C14%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C132%2C0:99 scaffold198 SAMTools SNP 919147 919147 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D869%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 919234 919234 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D801%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C494%2C133%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 919637 919637 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 919658 919658 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C205%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 919828 919828 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold198 SAMTools SNP 920142 920142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 920570 920570 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C199%2C16%2C165%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 921103 921103 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C241%2C2%2C138%3BMQ%3D49%3BFQ%3D204%3BPV4%3D1%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold198 SAMTools SNP 921546 921546 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C18%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.49%2C0.23%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold198 SAMTools SNP 924193 924193 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 924217 924217 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 924309 924309 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 924331 924331 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 924741 924741 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 924770 924770 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 925095 925095 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 925303 925303 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 925845 925845 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 925872 925872 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold198 SAMTools SNP 933597 933597 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold198 SAMTools SNP 933717 933717 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold198 SAMTools SNP 933803 933803 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C3%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C181%2C0:99 scaffold198 SAMTools SNP 934164 934164 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C47%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C175%2C0:99 scaffold198 SAMTools SNP 934607 934607 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C16%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold198 SAMTools SNP 934803 934803 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold198 SAMTools SNP 934815 934815 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C25:28 scaffold198 SAMTools SNP 935144 935144 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold198 SAMTools SNP 935267 935267 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 935276 935276 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold198 SAMTools SNP 935453 935453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 935549 935549 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 935552 935552 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C35%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold198 SAMTools SNP 936352 936352 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold198 SAMTools SNP 936381 936381 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold198 SAMTools SNP 936382 936382 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C10%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C226:99 scaffold198 SAMTools SNP 936600 936600 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold198 SAMTools SNP 936624 936624 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold198 SAMTools SNP 936977 936977 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C27%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00014%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 937378 937378 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 939552 939552 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 939583 939583 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 941256 941256 83.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C15%2C0:27 scaffold198 SAMTools SNP 942075 942075 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold198 SAMTools SNP 942523 942523 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold198 SAMTools SNP 942814 942814 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 949339 949339 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold198 SAMTools SNP 949442 949442 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold198 SAMTools SNP 949880 949880 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C13%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.74%2C5.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold198 SAMTools SNP 950136 950136 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold198 SAMTools SNP 950269 950269 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold198 SAMTools SNP 950324 950324 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C60%2C0:99 scaffold198 SAMTools SNP 969728 969728 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C102:40 scaffold198 SAMTools SNP 969730 969730 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 980124 980124 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold198 SAMTools SNP 1002904 1002904 59.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold198 SAMTools SNP 1003130 1003130 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold198 SAMTools SNP 1003179 1003179 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold198 SAMTools SNP 1003242 1003242 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1003263 1003263 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1003537 1003537 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold198 SAMTools SNP 1004393 1004393 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.044%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold198 SAMTools SNP 1005505 1005505 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold198 SAMTools SNP 1005600 1005600 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold198 SAMTools SNP 1005755 1005755 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold198 SAMTools SNP 1006022 1006022 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 1006032 1006032 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold198 SAMTools SNP 1006037 1006037 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0020%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold198 SAMTools SNP 1006067 1006067 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold198 SAMTools SNP 1006515 1006515 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold198 SAMTools SNP 1006584 1006584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1006705 1006705 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C193:99 scaffold198 SAMTools SNP 1007201 1007201 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D47%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C135:99 scaffold198 SAMTools SNP 1008693 1008693 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1010737 1010737 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold198 SAMTools SNP 1010758 1010758 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold198 SAMTools SNP 1010802 1010802 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1010820 1010820 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold198 SAMTools SNP 1011077 1011077 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold198 SAMTools SNP 1011125 1011125 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1011294 1011294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold198 SAMTools SNP 1011306 1011306 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold198 SAMTools SNP 1011727 1011727 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C11:14 scaffold198 SAMTools SNP 1011751 1011751 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C0.13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C127:99 scaffold198 SAMTools SNP 1011769 1011769 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.021%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold198 SAMTools SNP 1012048 1012048 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold198 SAMTools SNP 1012100 1012100 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1012121 1012121 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1012404 1012404 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold198 SAMTools SNP 1012414 1012414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1013193 1013193 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C216:99 scaffold198 SAMTools SNP 1013368 1013368 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C5%3BMQ%3D49%3BFQ%3D205%3BPV4%3D0.62%2C1%2C0.15%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold198 SAMTools SNP 1013389 1013389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold198 SAMTools SNP 1014174 1014174 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C21%2C0:39 scaffold198 SAMTools SNP 1014204 1014204 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold198 SAMTools SNP 1026365 1026365 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C123%2C0:99 scaffold198 SAMTools SNP 1026959 1026959 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C16%2C67%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1026961 1026961 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C18%2C42%2C16%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.42%2C3.7e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold198 SAMTools SNP 1027631 1027631 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold198 SAMTools SNP 1027883 1027883 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold198 SAMTools SNP 1028014 1028014 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold198 SAMTools SNP 1028072 1028072 71 . . REF=A;ALT=G,C,T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0%2C93%2C3%2C90%2C102%2C13%2C88%2C99:45 scaffold198 SAMTools SNP 1028251 1028251 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C87%3BMQ%3D50%3BFQ%3D-245%3BPV4%3D0.022%2C4.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C218%2C0:99 scaffold198 SAMTools SNP 1028790 1028790 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C52%2C39%2C32%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1.5e-10%2C5.6e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold198 SAMTools SNP 1028982 1028982 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold198 SAMTools SNP 1029411 1029411 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold198 SAMTools SNP 1029489 1029489 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C26%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C144%2C0:99 scaffold198 SAMTools SNP 1029608 1029608 62.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold198 SAMTools SNP 1029699 1029699 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C18%2C0:33 scaffold198 SAMTools SNP 1032876 1032876 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C3.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold198 SAMTools SNP 1032929 1032929 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C22%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.27%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C197:99 scaffold198 SAMTools SNP 1045769 1045769 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1046621 1046621 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C33%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C184%2C0:99 scaffold198 SAMTools SNP 1046771 1046771 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold198 SAMTools SNP 1046937 1046937 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold198 SAMTools SNP 1046967 1046967 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold198 SAMTools SNP 1049034 1049034 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1049067 1049067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1049169 1049169 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.54%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold198 SAMTools SNP 1049529 1049529 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold198 SAMTools SNP 1049652 1049652 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.07%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold198 SAMTools SNP 1049667 1049667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C2%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.067%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1050069 1050069 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D20%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold198 SAMTools SNP 1050150 1050150 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C15%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1.5e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1050186 1050186 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C20%2C44%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0024%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold198 SAMTools SNP 1050747 1050747 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C93%2C18%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1051408 1051408 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 1051447 1051447 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold198 SAMTools SNP 1051736 1051736 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C19%2C44%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1053521 1053521 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold198 SAMTools SNP 1055708 1055708 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.24%2C1.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold198 SAMTools SNP 1055909 1055909 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.052%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold198 SAMTools SNP 1056459 1056459 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 1057647 1057647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold198 SAMTools SNP 1059089 1059089 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 1059376 1059376 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.42%2C2.8e-11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C226:62 scaffold198 SAMTools SNP 1059788 1059788 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold198 SAMTools SNP 1060140 1060140 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1060209 1060209 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.26%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold198 SAMTools SNP 1060558 1060558 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold198 SAMTools SNP 1060965 1060965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold198 SAMTools SNP 1061291 1061291 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold198 SAMTools SNP 1061977 1061977 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold198 SAMTools SNP 1062305 1062305 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.28%2C0.026%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C232:99 scaffold198 SAMTools SNP 1063516 1063516 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1063906 1063906 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.17%2C1%2C8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1065281 1065281 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold198 SAMTools SNP 1065441 1065441 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.36%2C0.0012%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold198 SAMTools SNP 1065447 1065447 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.31%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold198 SAMTools SNP 1065855 1065855 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.053%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold198 SAMTools SNP 1066663 1066663 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C15%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.37%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold198 SAMTools SNP 1066872 1066872 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C212:99 scaffold198 SAMTools SNP 1066959 1066959 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1067231 1067231 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.25%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold198 SAMTools SNP 1067279 1067279 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1067831 1067831 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.37%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C32:35 scaffold198 SAMTools SNP 1067906 1067906 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.076%2C0.18%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold198 SAMTools SNP 1068275 1068275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1068439 1068439 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C152:99 scaffold198 SAMTools SNP 1068732 1068732 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold198 SAMTools SNP 1068800 1068800 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold198 SAMTools SNP 1069207 1069207 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold198 SAMTools SNP 1069608 1069608 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0063%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold198 SAMTools SNP 1071225 1071225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold198 SAMTools SNP 1071490 1071490 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold198 SAMTools SNP 1071521 1071521 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold198 SAMTools SNP 1071677 1071677 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C97:99 scaffold198 SAMTools SNP 1072516 1072516 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1073284 1073284 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold198 SAMTools SNP 1073963 1073963 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold198 SAMTools SNP 1074815 1074815 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold198 SAMTools SNP 1075113 1075113 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1078817 1078817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1079007 1079007 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.22%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1079028 1079028 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1079088 1079088 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C5.7e-17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C225:99 scaffold198 SAMTools SNP 1079169 1079169 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.15%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1079585 1079585 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold198 SAMTools SNP 1080095 1080095 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold198 SAMTools SNP 1080161 1080161 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C9%3BMQ%3D45%3BFQ%3D123%3BPV4%3D0.64%2C1%2C0.46%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold198 SAMTools SNP 1080451 1080451 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C42%2C0:81 scaffold198 SAMTools SNP 1080457 1080457 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C4%3BMQ%3D46%3BFQ%3D125%3BPV4%3D0.45%2C0.016%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold198 SAMTools SNP 1080478 1080478 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold198 SAMTools SNP 1080966 1080966 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold198 SAMTools SNP 1080976 1080976 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C104:99 scaffold198 SAMTools SNP 1080982 1080982 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C24%2C0:45 scaffold198 SAMTools SNP 1081012 1081012 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.46%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C162:31 scaffold198 SAMTools SNP 1081340 1081340 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold198 SAMTools SNP 1081346 1081346 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold198 SAMTools SNP 1082057 1082057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold198 SAMTools SNP 1082141 1082141 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1083589 1083589 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.2%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C135:99 scaffold198 SAMTools SNP 1083622 1083622 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold198 SAMTools SNP 1083685 1083685 74.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold198 SAMTools SNP 1084586 1084586 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C144%2C0:99 scaffold198 SAMTools SNP 1084939 1084939 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold198 SAMTools SNP 1085133 1085133 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold198 SAMTools SNP 1085174 1085174 59.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold198 SAMTools SNP 1085494 1085494 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C57%2C0:99 scaffold198 SAMTools SNP 1086051 1086051 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D568%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C240%2C35%2C249%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.46%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold198 SAMTools SNP 1086169 1086169 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 1086274 1086274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C55%2C13%3BMQ%3D50%3BFQ%3D-199%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold198 SAMTools SNP 1086622 1086622 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold198 SAMTools SNP 1086633 1086633 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C58:61 scaffold198 SAMTools SNP 1086709 1086709 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C255%2C0:99 scaffold198 SAMTools SNP 1086904 1086904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 1088382 1088382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold198 SAMTools SNP 1088747 1088747 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C32%2C3%2C4%3BMQ%3D48%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold198 SAMTools SNP 1088753 1088753 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C34%2C3%2C3%3BMQ%3D48%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold198 SAMTools SNP 1089978 1089978 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C36%2C22%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1089993 1089993 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C52%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.0021%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1090233 1090233 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C46%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold198 SAMTools SNP 1090350 1090350 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C22%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold198 SAMTools SNP 1093069 1093069 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C56%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold198 SAMTools SNP 1093117 1093117 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold198 SAMTools SNP 1093192 1093192 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold198 SAMTools SNP 1093216 1093216 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C61%3BMQ%3D50%3BFQ%3D-199%3BPV4%3D1%2C0.00069%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C172%2C0:99 scaffold198 SAMTools SNP 1093325 1093325 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold198 SAMTools SNP 1096372 1096372 208 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0%2C222%2C0%2C219:57 scaffold198 SAMTools SNP 1102802 1102802 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold198 SAMTools SNP 1103862 1103862 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C7%3BMQ%3D50%3BFQ%3D-141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold198 SAMTools SNP 1103898 1103898 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0034%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C38:41 scaffold198 SAMTools SNP 1103902 1103902 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.031%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C38:41 scaffold198 SAMTools SNP 1103985 1103985 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C33%2C6%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.034%2C4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C42%2C0:56 scaffold198 SAMTools SNP 1104029 1104029 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C25%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.28%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold198 SAMTools SNP 1106474 1106474 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C290%2C10%2C205%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1106574 1106574 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C8%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.41%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold198 SAMTools SNP 1109131 1109131 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold198 SAMTools SNP 1109179 1109179 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C62%2C81%2C31%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.051%2C3e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold198 SAMTools SNP 1109242 1109242 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C11%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1109566 1109566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C94%2C14%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1109638 1109638 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C11%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold198 SAMTools SNP 1116246 1116246 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold198 SAMTools SNP 1136537 1136537 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold198 SAMTools SNP 1136663 1136663 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold198 SAMTools SNP 1137422 1137422 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1137875 1137875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold198 SAMTools SNP 1137905 1137905 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold198 SAMTools SNP 1137932 1137932 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold198 SAMTools SNP 1138654 1138654 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold198 SAMTools SNP 1139204 1139204 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1139250 1139250 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1161844 1161844 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 1177236 1177236 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C24%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0067%2C2.3e-10%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold198 SAMTools SNP 1180548 1180548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold198 SAMTools SNP 1183818 1183818 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold198 SAMTools SNP 1184286 1184286 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1188326 1188326 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1228186 1228186 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold198 SAMTools SNP 1228961 1228961 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold198 SAMTools SNP 1228994 1228994 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold198 SAMTools SNP 1229122 1229122 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold198 SAMTools SNP 1229131 1229131 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold198 SAMTools SNP 1229197 1229197 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1231068 1231068 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold198 SAMTools SNP 1231080 1231080 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 1231081 1231081 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1231118 1231118 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold198 SAMTools SNP 1231539 1231539 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.23%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold198 SAMTools SNP 1231618 1231618 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold198 SAMTools SNP 1232212 1232212 193 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C29%2C228%2C0%2C225:33 scaffold198 SAMTools SNP 1232218 1232218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold198 SAMTools SNP 1232574 1232574 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold198 SAMTools SNP 1233776 1233776 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C25%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.0008%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1233809 1233809 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C37%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1234308 1234308 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.045%2C0.056%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C253:46 scaffold198 SAMTools SNP 1234859 1234859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 1234868 1234868 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold198 SAMTools SNP 1235621 1235621 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1235785 1235785 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1236295 1236295 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 1236423 1236423 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold198 SAMTools SNP 1236813 1236813 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1236816 1236816 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1237134 1237134 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold198 SAMTools SNP 1237161 1237161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold198 SAMTools SNP 1237170 1237170 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold198 SAMTools SNP 1237403 1237403 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold198 SAMTools SNP 1237457 1237457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold198 SAMTools SNP 1237469 1237469 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold198 SAMTools SNP 1237573 1237573 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold198 SAMTools SNP 1237604 1237604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 1237621 1237621 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold198 SAMTools SNP 1237799 1237799 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold198 SAMTools SNP 1237809 1237809 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold198 SAMTools SNP 1237856 1237856 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold198 SAMTools SNP 1238891 1238891 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1247384 1247384 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold198 SAMTools SNP 1247940 1247940 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold198 SAMTools SNP 1247997 1247997 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold198 SAMTools SNP 1250941 1250941 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.35%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold198 SAMTools SNP 1250979 1250979 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold198 SAMTools SNP 1251208 1251208 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold198 SAMTools SNP 1251340 1251340 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold198 SAMTools SNP 1251418 1251418 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 1251998 1251998 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold198 SAMTools SNP 1252706 1252706 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold198 SAMTools SNP 1262600 1262600 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold198 SAMTools SNP 1265382 1265382 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1265471 1265471 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1266831 1266831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C36%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold198 SAMTools SNP 1267561 1267561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 1269309 1269309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C67%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold198 SAMTools SNP 1269369 1269369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold198 SAMTools SNP 1269375 1269375 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold198 SAMTools SNP 1269556 1269556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold198 SAMTools SNP 1269565 1269565 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold198 SAMTools SNP 1269997 1269997 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold198 SAMTools SNP 1271028 1271028 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1271055 1271055 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold198 SAMTools SNP 1274125 1274125 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.062%2C3.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C72:75 scaffold198 SAMTools SNP 1274146 1274146 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0094%2C1.9e-12%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold198 SAMTools SNP 1274319 1274319 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C27%2C0:51 scaffold198 SAMTools SNP 1274328 1274328 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C24%2C0:45 scaffold198 SAMTools SNP 1274819 1274819 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold198 SAMTools SNP 1274854 1274854 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold198 SAMTools SNP 1275450 1275450 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold198 SAMTools SNP 1275512 1275512 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D5.2e-05%2C2e-08%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold198 SAMTools SNP 1276574 1276574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C376%2C97%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.21%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold198 SAMTools SNP 1276616 1276616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C204%2C67%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.013%2C0.072%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1276793 1276793 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1278802 1278802 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C28%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.32%2C1.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C136:60 scaffold198 SAMTools SNP 1278949 1278949 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1e-10%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold198 SAMTools SNP 1279612 1279612 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C37%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold198 SAMTools SNP 1279672 1279672 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold198 SAMTools SNP 1280064 1280064 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold198 SAMTools SNP 1280157 1280157 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C36%2C0:69 scaffold198 SAMTools SNP 1281135 1281135 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C54%2C0:99 scaffold198 SAMTools SNP 1281513 1281513 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold198 SAMTools SNP 1283578 1283578 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold198 SAMTools SNP 1283715 1283715 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold198 SAMTools SNP 1284241 1284241 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C24%2C0:45 scaffold198 SAMTools SNP 1284277 1284277 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1284284 1284284 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1292673 1292673 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C36%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C163%2C0:99 scaffold198 SAMTools SNP 1293340 1293340 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold198 SAMTools SNP 1293503 1293503 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold198 SAMTools SNP 1293526 1293526 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold198 SAMTools SNP 1293940 1293940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C7%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold198 SAMTools SNP 1297488 1297488 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold198 SAMTools SNP 1297871 1297871 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C74%2C15%2C72%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.086%2C2.9e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold198 SAMTools SNP 1298217 1298217 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold198 SAMTools SNP 1301865 1301865 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C48%2C0%2C13%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold198 SAMTools SNP 1302567 1302567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C53%2C16%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1303015 1303015 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1305477 1305477 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold198 SAMTools SNP 1305825 1305825 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C87%2C0:99 scaffold198 SAMTools SNP 1306081 1306081 31.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold198 SAMTools SNP 1306161 1306161 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1308565 1308565 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold198 SAMTools SNP 1312329 1312329 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold198 SAMTools SNP 1312740 1312740 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold198 SAMTools SNP 1313238 1313238 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1313304 1313304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold198 SAMTools SNP 1313409 1313409 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold198 SAMTools SNP 1313430 1313430 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold198 SAMTools SNP 1313758 1313758 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1313864 1313864 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C96:99 scaffold198 SAMTools SNP 1314336 1314336 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold198 SAMTools SNP 1321914 1321914 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold198 SAMTools SNP 1322479 1322479 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold198 SAMTools SNP 1323404 1323404 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold198 SAMTools SNP 1323743 1323743 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1349437 1349437 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold198 SAMTools SNP 1349466 1349466 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold198 SAMTools SNP 1353552 1353552 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1353587 1353587 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1353775 1353775 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1353794 1353794 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold198 SAMTools SNP 1354879 1354879 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1354900 1354900 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1356975 1356975 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1357053 1357053 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1357992 1357992 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0067%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C222:62 scaffold198 SAMTools SNP 1357994 1357994 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C62:65 scaffold198 SAMTools SNP 1358026 1358026 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold198 SAMTools SNP 1358051 1358051 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold198 SAMTools SNP 1394828 1394828 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1394873 1394873 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1397081 1397081 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.32%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold198 SAMTools SNP 1397090 1397090 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold198 SAMTools SNP 1411408 1411408 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 1411409 1411409 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold198 SAMTools SNP 1412230 1412230 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1413245 1413245 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold198 SAMTools SNP 1414672 1414672 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1417403 1417403 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold198 SAMTools SNP 1418040 1418040 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1418482 1418482 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1420190 1420190 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C209:69 scaffold198 SAMTools SNP 1420865 1420865 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C132:99 scaffold198 SAMTools SNP 1420894 1420894 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold198 SAMTools SNP 1421039 1421039 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold198 SAMTools SNP 1421169 1421169 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1422694 1422694 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1423484 1423484 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold198 SAMTools SNP 1423766 1423766 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.31%2C5.4e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C242:99 scaffold198 SAMTools SNP 1424188 1424188 20.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold198 SAMTools SNP 1424350 1424350 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold198 SAMTools SNP 1424440 1424440 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C54%2C0:99 scaffold198 SAMTools SNP 1424546 1424546 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1425030 1425030 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold198 SAMTools SNP 1425060 1425060 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold198 SAMTools SNP 1425362 1425362 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold198 SAMTools SNP 1425390 1425390 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.087%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 1425852 1425852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold198 SAMTools SNP 1426413 1426413 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 1426416 1426416 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold198 SAMTools SNP 1440020 1440020 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C149:99 scaffold198 SAMTools SNP 1440053 1440053 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.0017%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C206:58 scaffold198 SAMTools SNP 1440432 1440432 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.03%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold198 SAMTools SNP 1441913 1441913 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.013%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1441916 1441916 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1441948 1441948 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold198 SAMTools SNP 1442039 1442039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold198 SAMTools SNP 1444015 1444015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1444024 1444024 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C32%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1448265 1448265 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C21%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1448335 1448335 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C3%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1448347 1448347 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.09%2C0.37%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1449213 1449213 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C9%2C12%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold198 SAMTools SNP 1449215 1449215 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C5%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold198 SAMTools SNP 1449502 1449502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C80%2C3%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold198 SAMTools SNP 1449545 1449545 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C66%2C2%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.043%2C0.44%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold198 SAMTools SNP 1451099 1451099 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold198 SAMTools SNP 1451199 1451199 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-6.19%3BPV4%3D1%2C0.0004%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C22:25 scaffold198 SAMTools SNP 1460812 1460812 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C26%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.16%2C0.025%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C121:99 scaffold198 SAMTools SNP 1460908 1460908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold198 SAMTools SNP 1462259 1462259 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold198 SAMTools SNP 1462307 1462307 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold198 SAMTools SNP 1462352 1462352 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.062%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C207:99 scaffold198 SAMTools SNP 1463573 1463573 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold198 SAMTools SNP 1463598 1463598 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold198 SAMTools SNP 1463637 1463637 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold198 SAMTools SNP 1464082 1464082 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold198 SAMTools SNP 1464441 1464441 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold198 SAMTools SNP 1464447 1464447 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold198 SAMTools SNP 1464474 1464474 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold198 SAMTools SNP 1464867 1464867 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold198 SAMTools SNP 1464888 1464888 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.22%2C0.053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C221:99 scaffold198 SAMTools SNP 1469734 1469734 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C138:99 scaffold198 SAMTools SNP 1470323 1470323 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold198 SAMTools SNP 1473018 1473018 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold198 SAMTools SNP 1474892 1474892 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold198 SAMTools SNP 1475199 1475199 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold198 SAMTools SNP 1476509 1476509 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold198 SAMTools SNP 1490118 1490118 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4%3BPV4%3D1%2C7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C29:32 scaffold198 SAMTools SNP 1537196 1537196 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1537907 1537907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold198 SAMTools SNP 1546244 1546244 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C4%2C0%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold20 SAMTools SNP 34687 34687 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold20 SAMTools SNP 34911 34911 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C66:33 scaffold20 SAMTools SNP 34974 34974 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold20 SAMTools SNP 40095 40095 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold20 SAMTools SNP 45341 45341 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 68934 68934 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold20 SAMTools SNP 94212 94212 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 94744 94744 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 95422 95422 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold20 SAMTools SNP 100232 100232 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold20 SAMTools SNP 102431 102431 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 102744 102744 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold20 SAMTools SNP 103852 103852 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 103855 103855 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 104834 104834 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 105203 105203 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold20 SAMTools SNP 107557 107557 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 114001 114001 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 114112 114112 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 115715 115715 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 117644 117644 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold20 SAMTools SNP 120541 120541 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold20 SAMTools SNP 120823 120823 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 121760 121760 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold20 SAMTools SNP 121784 121784 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold20 SAMTools SNP 122080 122080 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold20 SAMTools SNP 122603 122603 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold20 SAMTools SNP 123078 123078 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold20 SAMTools SNP 123114 123114 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold20 SAMTools SNP 148374 148374 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold20 SAMTools SNP 148436 148436 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 148445 148445 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 151638 151638 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 154406 154406 98.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold20 SAMTools SNP 154417 154417 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold20 SAMTools SNP 154538 154538 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold20 SAMTools SNP 154581 154581 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold20 SAMTools SNP 154729 154729 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 154861 154861 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold20 SAMTools SNP 155214 155214 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 157825 157825 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 158435 158435 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold20 SAMTools SNP 158724 158724 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold20 SAMTools SNP 158736 158736 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold20 SAMTools SNP 183493 183493 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 203602 203602 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 204113 204113 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 204139 204139 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold20 SAMTools SNP 229077 229077 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C47%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C241:99 scaffold20 SAMTools SNP 239000 239000 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold20 SAMTools SNP 239002 239002 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold20 SAMTools SNP 244617 244617 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold20 SAMTools SNP 245138 245138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold20 SAMTools SNP 245347 245347 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C127:99 scaffold20 SAMTools SNP 245363 245363 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D47%3BFQ%3D88%3BPV4%3D1%2C0.5%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C219:99 scaffold20 SAMTools SNP 246242 246242 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C17%2C0%3BMQ%3D49%3BFQ%3D144%3BPV4%3D1%2C0.089%2C0.2%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C238:99 scaffold20 SAMTools SNP 246278 246278 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C8%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold20 SAMTools SNP 247505 247505 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C35%2C11%2C5%3BMQ%3D43%3BFQ%3D131%3BPV4%3D0.018%2C1%2C0.00043%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold20 SAMTools SNP 247610 247610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C502%2C23%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold20 SAMTools SNP 248584 248584 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 250242 250242 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 250996 250996 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold20 SAMTools SNP 251085 251085 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C0.0078%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C224:30 scaffold20 SAMTools SNP 251678 251678 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.59%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold20 SAMTools SNP 252040 252040 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 252111 252111 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C10%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold20 SAMTools SNP 252136 252136 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C14%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold20 SAMTools SNP 256039 256039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold20 SAMTools SNP 257518 257518 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C6%3BMQ%3D45%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold20 SAMTools SNP 258617 258617 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold20 SAMTools SNP 258856 258856 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.078%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C66:69 scaffold20 SAMTools SNP 258914 258914 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold20 SAMTools SNP 259487 259487 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 259685 259685 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold20 SAMTools SNP 259697 259697 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold20 SAMTools SNP 261139 261139 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold20 SAMTools SNP 262067 262067 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 262522 262522 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold20 SAMTools SNP 263598 263598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold20 SAMTools SNP 264394 264394 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.018%2C0.27%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold20 SAMTools SNP 266574 266574 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C0.16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 267419 267419 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C7%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold20 SAMTools SNP 267448 267448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 267965 267965 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold20 SAMTools SNP 268355 268355 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C35:38 scaffold20 SAMTools SNP 268820 268820 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C6%3BMQ%3D46%3BFQ%3D34%3BPV4%3D1%2C1.6e-20%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C168:64 scaffold20 SAMTools SNP 268945 268945 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C2%2C12%3BMQ%3D47%3BFQ%3D224%3BPV4%3D0.0031%2C1%2C0.093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold20 SAMTools SNP 274586 274586 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 275416 275416 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold20 SAMTools SNP 276431 276431 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold20 SAMTools SNP 276448 276448 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold20 SAMTools SNP 279326 279326 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C245:99 scaffold20 SAMTools SNP 280943 280943 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold20 SAMTools SNP 281479 281479 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold20 SAMTools SNP 281495 281495 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold20 SAMTools SNP 281533 281533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 281543 281543 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold20 SAMTools SNP 282095 282095 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold20 SAMTools SNP 282112 282112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold20 SAMTools SNP 283466 283466 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C18%2C5%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C0.025%2C0.25%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 283708 283708 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C20%2C10%3BMQ%3D36%3BFQ%3D225%3BPV4%3D1%2C1%2C0.12%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 283786 283786 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C1%2C25%3BMQ%3D41%3BFQ%3D216%3BPV4%3D0.0095%2C0.26%2C0.024%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold20 SAMTools SNP 285681 285681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold20 SAMTools SNP 285765 285765 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold20 SAMTools SNP 286596 286596 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold20 SAMTools SNP 286825 286825 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C238:57 scaffold20 SAMTools SNP 286978 286978 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C93%2C0:99 scaffold20 SAMTools SNP 287534 287534 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 290562 290562 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold20 SAMTools SNP 290850 290850 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold20 SAMTools SNP 290877 290877 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.2%3BPV4%3D0.4%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C110:99 scaffold20 SAMTools SNP 291432 291432 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 291435 291435 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 291476 291476 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00086%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold20 SAMTools SNP 292060 292060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 292517 292517 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 292526 292526 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 292744 292744 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold20 SAMTools SNP 292768 292768 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 293226 293226 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold20 SAMTools SNP 293253 293253 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 293331 293331 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold20 SAMTools SNP 294447 294447 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold20 SAMTools SNP 294522 294522 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.00057%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C253:99 scaffold20 SAMTools SNP 294525 294525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold20 SAMTools SNP 295101 295101 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold20 SAMTools SNP 295134 295134 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.22%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold20 SAMTools SNP 295894 295894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold20 SAMTools SNP 295906 295906 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold20 SAMTools SNP 296060 296060 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold20 SAMTools SNP 298747 298747 34.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold20 SAMTools SNP 302173 302173 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold20 SAMTools SNP 305971 305971 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C251:99 scaffold20 SAMTools SNP 305977 305977 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold20 SAMTools SNP 306004 306004 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold20 SAMTools SNP 306046 306046 158 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold20 SAMTools SNP 306058 306058 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C235:99 scaffold20 SAMTools SNP 306519 306519 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold20 SAMTools SNP 306527 306527 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold20 SAMTools SNP 308929 308929 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold20 SAMTools SNP 312292 312292 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C75%2C32%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-06%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 312328 312328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C69%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 312358 312358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C47%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 312769 312769 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C35%2C22%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 312815 312815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C11%2C21%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.035%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 313450 313450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C15%2C48%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 313615 313615 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C69%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 313618 313618 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C69%2C6%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00077%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 314974 314974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold20 SAMTools SNP 314983 314983 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold20 SAMTools SNP 316283 316283 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C17%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C248:99 scaffold20 SAMTools SNP 316798 316798 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.048%2C0.0089%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold20 SAMTools SNP 316806 316806 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0055%2C0.00015%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold20 SAMTools SNP 316846 316846 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 317163 317163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 317225 317225 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.12%2C0.00038%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold20 SAMTools SNP 318264 318264 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C7%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold20 SAMTools SNP 319498 319498 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 324280 324280 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold20 SAMTools SNP 325218 325218 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 325257 325257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 328044 328044 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.051%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold20 SAMTools SNP 331697 331697 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold20 SAMTools SNP 331760 331760 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 331790 331790 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold20 SAMTools SNP 332975 332975 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 333980 333980 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C11%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.18%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold20 SAMTools SNP 334066 334066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold20 SAMTools SNP 334073 334073 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 334262 334262 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold20 SAMTools SNP 334380 334380 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C178:99 scaffold20 SAMTools SNP 340068 340068 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.46%2C0.044%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C208:68 scaffold20 SAMTools SNP 340485 340485 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 340509 340509 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 345411 345411 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold20 SAMTools SNP 345620 345620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 348328 348328 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold20 SAMTools SNP 348329 348329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold20 SAMTools SNP 348443 348443 173 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C7%2C6%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.002%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold20 SAMTools SNP 349006 349006 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold20 SAMTools SNP 349141 349141 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 349196 349196 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.038%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 349654 349654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold20 SAMTools SNP 349660 349660 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold20 SAMTools SNP 349834 349834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C94%2C67%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C4.3e-138%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 350594 350594 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C350%2C8%2C341%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.077%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 350616 350616 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C54%2C0%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold20 SAMTools SNP 350693 350693 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold20 SAMTools SNP 356308 356308 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold20 SAMTools SNP 356326 356326 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold20 SAMTools SNP 365972 365972 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 387932 387932 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold20 SAMTools SNP 388236 388236 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold20 SAMTools SNP 390317 390317 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold20 SAMTools SNP 390394 390394 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold20 SAMTools SNP 391812 391812 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold20 SAMTools SNP 391850 391850 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold20 SAMTools SNP 392187 392187 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold20 SAMTools SNP 392211 392211 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold20 SAMTools SNP 392529 392529 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold20 SAMTools SNP 392534 392534 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold20 SAMTools SNP 393212 393212 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold20 SAMTools SNP 393475 393475 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold20 SAMTools SNP 394042 394042 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C219:99 scaffold20 SAMTools SNP 394066 394066 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold20 SAMTools SNP 394503 394503 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold20 SAMTools SNP 394656 394656 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold20 SAMTools SNP 399945 399945 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold20 SAMTools SNP 399960 399960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold20 SAMTools SNP 402093 402093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold20 SAMTools SNP 404496 404496 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C45%2C0:87 scaffold20 SAMTools SNP 404588 404588 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold20 SAMTools SNP 404600 404600 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.025%2C0.41%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold20 SAMTools SNP 405147 405147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C15%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold20 SAMTools SNP 405461 405461 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold20 SAMTools SNP 405619 405619 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold20 SAMTools SNP 407470 407470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 407527 407527 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold20 SAMTools SNP 408546 408546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold20 SAMTools SNP 409254 409254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold20 SAMTools SNP 409620 409620 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold20 SAMTools SNP 409660 409660 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.4%2C0.027%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C122:86 scaffold20 SAMTools SNP 409674 409674 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C157:99 scaffold20 SAMTools SNP 410468 410468 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold20 SAMTools SNP 410503 410503 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.22%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold20 SAMTools SNP 410504 410504 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold20 SAMTools SNP 410516 410516 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold20 SAMTools SNP 411421 411421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold20 SAMTools SNP 411798 411798 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C5%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.015%2C0.066%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold20 SAMTools SNP 411852 411852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold20 SAMTools SNP 412491 412491 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold20 SAMTools SNP 412494 412494 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold20 SAMTools SNP 412518 412518 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold20 SAMTools SNP 412596 412596 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold20 SAMTools SNP 412647 412647 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold20 SAMTools SNP 413235 413235 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold20 SAMTools SNP 413890 413890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold20 SAMTools SNP 413938 413938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold20 SAMTools SNP 414332 414332 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.012%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C236:99 scaffold20 SAMTools SNP 415195 415195 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 415320 415320 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.029%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C186:60 scaffold20 SAMTools SNP 415806 415806 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C11%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.041%2C2.8e-05%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold20 SAMTools SNP 416849 416849 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 416875 416875 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.0075%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C242:99 scaffold20 SAMTools SNP 422008 422008 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.16%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold20 SAMTools SNP 422488 422488 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 423449 423449 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C7%3BMQ%3D49%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold20 SAMTools SNP 423473 423473 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold20 SAMTools SNP 425036 425036 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold20 SAMTools SNP 425269 425269 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.081%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold20 SAMTools SNP 425281 425281 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold20 SAMTools SNP 425303 425303 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.36%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold20 SAMTools SNP 425718 425718 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold20 SAMTools SNP 426307 426307 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.47%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold20 SAMTools SNP 427547 427547 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C3.5e-06%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold20 SAMTools SNP 427598 427598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold20 SAMTools SNP 428432 428432 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold20 SAMTools SNP 428467 428467 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold20 SAMTools SNP 428864 428864 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C200:54 scaffold20 SAMTools SNP 429090 429090 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold20 SAMTools SNP 429666 429666 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold20 SAMTools SNP 430026 430026 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold20 SAMTools SNP 430036 430036 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold20 SAMTools SNP 430694 430694 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold20 SAMTools SNP 462316 462316 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C43:33 scaffold20 SAMTools SNP 462727 462727 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C2%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C178%2C0:99 scaffold20 SAMTools SNP 471916 471916 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold20 SAMTools SNP 480467 480467 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C78%2C0:99 scaffold20 SAMTools SNP 498404 498404 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold20 SAMTools SNP 498545 498545 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C2.6e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C32:35 scaffold20 SAMTools SNP 550327 550327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold20 SAMTools SNP 551907 551907 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold20 SAMTools SNP 551968 551968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold20 SAMTools SNP 552795 552795 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold20 SAMTools SNP 552815 552815 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 572676 572676 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold20 SAMTools SNP 573192 573192 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold20 SAMTools SNP 573239 573239 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold20 SAMTools SNP 573774 573774 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.36%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C189:30 scaffold20 SAMTools SNP 578340 578340 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold20 SAMTools SNP 579658 579658 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold20 SAMTools SNP 590282 590282 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold20 SAMTools SNP 604016 604016 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C102%2C0:99 scaffold20 SAMTools SNP 604099 604099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 604870 604870 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold20 SAMTools SNP 604876 604876 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold20 SAMTools SNP 614606 614606 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold20 SAMTools SNP 616375 616375 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold20 SAMTools SNP 616845 616845 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C9%2C4%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 616860 616860 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.31%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 616884 616884 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C12%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.77%2C0.39%2C0.2%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 619353 619353 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold20 SAMTools SNP 619667 619667 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C2.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold20 SAMTools SNP 619669 619669 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold20 SAMTools SNP 620444 620444 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold20 SAMTools SNP 620501 620501 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.4%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 621061 621061 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold20 SAMTools SNP 621721 621721 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold20 SAMTools SNP 621724 621724 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold20 SAMTools SNP 622246 622246 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold20 SAMTools SNP 622686 622686 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold20 SAMTools SNP 622829 622829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold20 SAMTools SNP 623710 623710 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold20 SAMTools SNP 623938 623938 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold20 SAMTools SNP 624499 624499 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C13%3BMQ%3D48%3BFQ%3D224%3BPV4%3D0.45%2C0.2%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold20 SAMTools SNP 624544 624544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C7%2C17%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.47%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 625841 625841 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold20 SAMTools SNP 625889 625889 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold20 SAMTools SNP 626600 626600 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.024%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold20 SAMTools SNP 629570 629570 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold20 SAMTools SNP 631475 631475 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold20 SAMTools SNP 631478 631478 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold20 SAMTools SNP 631661 631661 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold20 SAMTools SNP 635043 635043 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold20 SAMTools SNP 635060 635060 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold20 SAMTools SNP 635208 635208 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.95%3BPV4%3D0.17%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C32:35 scaffold20 SAMTools SNP 635415 635415 8.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold20 SAMTools SNP 635811 635811 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold20 SAMTools SNP 635910 635910 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold20 SAMTools SNP 692617 692617 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold20 SAMTools SNP 719042 719042 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold20 SAMTools SNP 719250 719250 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold20 SAMTools SNP 720303 720303 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold20 SAMTools SNP 767540 767540 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold20 SAMTools SNP 767712 767712 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold20 SAMTools SNP 774302 774302 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C120:54 scaffold20 SAMTools SNP 774353 774353 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold20 SAMTools SNP 774441 774441 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold20 SAMTools SNP 777438 777438 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C5.2e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C176:93 scaffold20 SAMTools SNP 777813 777813 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold20 SAMTools SNP 778395 778395 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.57%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C225:99 scaffold20 SAMTools SNP 779335 779335 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold20 SAMTools SNP 837745 837745 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold20 SAMTools SNP 839498 839498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold20 SAMTools SNP 839519 839519 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 839550 839550 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.55%2C0.46%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold20 SAMTools SNP 839718 839718 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 839787 839787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 840764 840764 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold20 SAMTools SNP 842901 842901 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold20 SAMTools SNP 842936 842936 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold20 SAMTools SNP 843969 843969 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold20 SAMTools SNP 848885 848885 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold20 SAMTools SNP 848906 848906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold20 SAMTools SNP 848912 848912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold20 SAMTools SNP 849506 849506 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold20 SAMTools SNP 850905 850905 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 852007 852007 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.55%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold20 SAMTools SNP 852277 852277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 852873 852873 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold20 SAMTools SNP 852904 852904 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 854241 854241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 854253 854253 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold20 SAMTools SNP 854597 854597 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold20 SAMTools SNP 857306 857306 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C203:99 scaffold20 SAMTools SNP 857330 857330 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C220:99 scaffold20 SAMTools SNP 857342 857342 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 10785 10785 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold200 SAMTools SNP 10848 10848 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold200 SAMTools SNP 11586 11586 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 11600 11600 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold200 SAMTools SNP 13491 13491 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold200 SAMTools SNP 13504 13504 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold200 SAMTools SNP 14322 14322 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold200 SAMTools SNP 18225 18225 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 22766 22766 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold200 SAMTools SNP 40028 40028 16.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold200 SAMTools SNP 44310 44310 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold200 SAMTools SNP 44320 44320 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.093%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C215:37 scaffold200 SAMTools SNP 44329 44329 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold200 SAMTools SNP 44551 44551 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.0023%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C232:73 scaffold200 SAMTools SNP 44559 44559 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C6%2C0%3BMQ%3D49%3BFQ%3D54%3BPV4%3D1%2C0.32%2C0.01%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C229:84 scaffold200 SAMTools SNP 44584 44584 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C12%2C9%2C3%3BMQ%3D49%3BFQ%3D167%3BPV4%3D0.7%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold200 SAMTools SNP 45752 45752 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C47%2C12%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D6.8e-10%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold200 SAMTools SNP 48737 48737 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold200 SAMTools SNP 48769 48769 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold200 SAMTools SNP 48944 48944 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold200 SAMTools SNP 54277 54277 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold200 SAMTools SNP 54290 54290 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold200 SAMTools SNP 54340 54340 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 54351 54351 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold200 SAMTools SNP 54367 54367 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold200 SAMTools SNP 54554 54554 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold200 SAMTools SNP 54705 54705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold200 SAMTools SNP 54776 54776 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold200 SAMTools SNP 55242 55242 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold200 SAMTools SNP 55245 55245 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold200 SAMTools SNP 55251 55251 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold200 SAMTools SNP 66163 66163 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 68819 68819 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold200 SAMTools SNP 89923 89923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 89965 89965 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 102969 102969 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold200 SAMTools SNP 102986 102986 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold200 SAMTools SNP 103843 103843 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold200 SAMTools SNP 104649 104649 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold200 SAMTools SNP 104838 104838 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C39%2C0:75 scaffold200 SAMTools SNP 109265 109265 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold200 SAMTools SNP 109431 109431 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 111152 111152 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 111218 111218 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold200 SAMTools SNP 112033 112033 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold200 SAMTools SNP 115539 115539 5.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C12%2C0:12 scaffold200 SAMTools SNP 115987 115987 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C39%2C0:75 scaffold201 SAMTools SNP 4826 4826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold201 SAMTools SNP 4844 4844 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold201 SAMTools SNP 6552 6552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold201 SAMTools SNP 6632 6632 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C142%2C20%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.072%2C7.9e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold201 SAMTools SNP 6696 6696 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C193%2C12%2C47%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.13%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold201 SAMTools SNP 6705 6705 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C203%2C10%2C51%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.27%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold201 SAMTools SNP 10171 10171 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C3%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.34%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold201 SAMTools SNP 10198 10198 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C1%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.66%2C0.0037%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold201 SAMTools SNP 10252 10252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold201 SAMTools SNP 10258 10258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold201 SAMTools SNP 10668 10668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C56%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold201 SAMTools SNP 10671 10671 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C54%2C1%2C10%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold201 SAMTools SNP 12461 12461 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold201 SAMTools SNP 12539 12539 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C9%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.036%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 15339 15339 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C8%2C0%3BMQ%3D48%3BFQ%3D23%3BPV4%3D0.095%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold201 SAMTools SNP 15342 15342 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C21%2C8%2C0%3BMQ%3D48%3BFQ%3D12.3%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold201 SAMTools SNP 15952 15952 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold201 SAMTools SNP 15988 15988 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold201 SAMTools SNP 16192 16192 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C25%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C186:99 scaffold201 SAMTools SNP 16255 16255 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C25%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00011%2C0.23%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 16471 16471 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C1%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold201 SAMTools SNP 17142 17142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C10%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 17241 17241 159 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C63%2C208%2C0%2C202:45 scaffold201 SAMTools SNP 17244 17244 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold201 SAMTools SNP 18516 18516 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.28%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold201 SAMTools SNP 19827 19827 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 20119 20119 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C22%2C0%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.022%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold201 SAMTools SNP 20436 20436 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold201 SAMTools SNP 22584 22584 59.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold201 SAMTools SNP 24511 24511 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold201 SAMTools SNP 24940 24940 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.1e-12%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold201 SAMTools SNP 25613 25613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C25%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.43%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 25803 25803 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0016%2C0.00036%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold201 SAMTools SNP 25826 25826 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 25856 25856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C46%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.016%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 27026 27026 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold201 SAMTools SNP 27046 27046 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.18%2C0.017%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C247:56 scaffold201 SAMTools SNP 27051 27051 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.061%2C0.00028%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C240:94 scaffold201 SAMTools SNP 27077 27077 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.005%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold201 SAMTools SNP 27346 27346 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold201 SAMTools SNP 27349 27349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold201 SAMTools SNP 27667 27667 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold201 SAMTools SNP 28932 28932 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold201 SAMTools SNP 28974 28974 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 29299 29299 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C4%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 29332 29332 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold201 SAMTools SNP 29349 29349 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold201 SAMTools SNP 29398 29398 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C2.6e-27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 29686 29686 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 29758 29758 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 30862 30862 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold201 SAMTools SNP 31126 31126 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.072%2C0.012%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold201 SAMTools SNP 31401 31401 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C10%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0074%2C0.0019%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold201 SAMTools SNP 31606 31606 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C69%2C7%2C11%3BMQ%3D49%3BFQ%3D220%3BPV4%3D0.062%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold201 SAMTools SNP 32808 32808 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold201 SAMTools SNP 34553 34553 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C33%2C0:63 scaffold201 SAMTools SNP 34836 34836 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.66%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold201 SAMTools SNP 34851 34851 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold201 SAMTools SNP 34857 34857 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.34%2C0.054%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold201 SAMTools SNP 34890 34890 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold201 SAMTools SNP 34899 34899 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C72%2C0:99 scaffold201 SAMTools SNP 35499 35499 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C36%2C0:69 scaffold201 SAMTools SNP 35629 35629 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.12%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold201 SAMTools SNP 35647 35647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold201 SAMTools SNP 36653 36653 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold201 SAMTools SNP 37385 37385 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold201 SAMTools SNP 44066 44066 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C37%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 44664 44664 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C39%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 45068 45068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C51%2C9%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.12%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 45392 45392 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.27%2C0.00089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold201 SAMTools SNP 46357 46357 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C32%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 46400 46400 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold201 SAMTools SNP 46720 46720 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.57%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold201 SAMTools SNP 46726 46726 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C0%2C14%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.32%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold201 SAMTools SNP 47182 47182 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C2%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold201 SAMTools SNP 47839 47839 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.57%2C0.43%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold201 SAMTools SNP 47872 47872 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold201 SAMTools SNP 48805 48805 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5.5e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold201 SAMTools SNP 49066 49066 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold201 SAMTools SNP 49075 49075 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold201 SAMTools SNP 50570 50570 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold201 SAMTools SNP 51393 51393 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C27%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 52850 52850 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C7%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold201 SAMTools SNP 52883 52883 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C23%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C2.3e-20%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 53285 53285 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold201 SAMTools SNP 53543 53543 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold201 SAMTools SNP 53584 53584 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold201 SAMTools SNP 54700 54700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C107%2C32%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 55356 55356 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0067%2C0.0074%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold201 SAMTools SNP 55437 55437 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 55842 55842 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C25%2C34%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0013%2C1.5e-07%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 56437 56437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C35%2C54%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C0.086%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 56770 56770 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C215%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 57375 57375 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 57450 57450 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold201 SAMTools SNP 57503 57503 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.041%2C2e-07%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold201 SAMTools SNP 59043 59043 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C1%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.12%2C1%2C1%2C6.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold201 SAMTools SNP 59238 59238 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold201 SAMTools SNP 60182 60182 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C14%2C66%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C8.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 60224 60224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C22%2C29%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-11%2C0.41%2C1%2C6.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 61192 61192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C306%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 61258 61258 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C11%2C18%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.31%2C8.8e-43%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold201 SAMTools SNP 61342 61342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C24%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold201 SAMTools SNP 62027 62027 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C5%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.7%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold201 SAMTools SNP 63391 63391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C94%2C36%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 64798 64798 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold201 SAMTools SNP 64861 64861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C21%2C39%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 65594 65594 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C60%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold201 SAMTools SNP 65711 65711 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold201 SAMTools SNP 68263 68263 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold201 SAMTools SNP 68271 68271 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold201 SAMTools SNP 68465 68465 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold201 SAMTools SNP 68497 68497 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold201 SAMTools SNP 68532 68532 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold201 SAMTools SNP 68767 68767 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold201 SAMTools SNP 70735 70735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 11902 11902 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 11903 11903 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 12074 12074 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1.1e-10%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C145:99 scaffold203 SAMTools SNP 12416 12416 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D43%3BFQ%3D27%3BPV4%3D0.43%2C7.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C162:57 scaffold203 SAMTools SNP 12971 12971 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.37%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C106:99 scaffold203 SAMTools SNP 61478 61478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 61487 61487 11.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D-7.81%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C20:24 scaffold203 SAMTools SNP 62874 62874 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.25%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold203 SAMTools SNP 67300 67300 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C9%2C0%3BMQ%3D44%3BFQ%3D101%3BPV4%3D0.094%2C0.12%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C233:99 scaffold203 SAMTools SNP 68742 68742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 68835 68835 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 73751 73751 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 78222 78222 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 80047 80047 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold203 SAMTools SNP 80062 80062 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 80091 80091 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 80304 80304 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold203 SAMTools SNP 80313 80313 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold203 SAMTools SNP 80597 80597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold203 SAMTools SNP 80613 80613 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold203 SAMTools SNP 80633 80633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold203 SAMTools SNP 80645 80645 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold203 SAMTools SNP 81283 81283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold203 SAMTools SNP 85938 85938 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 86284 86284 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 99023 99023 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 120089 120089 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold203 SAMTools SNP 149119 149119 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold203 SAMTools SNP 149765 149765 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 150122 150122 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 150144 150144 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 226358 226358 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold203 SAMTools SNP 228007 228007 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold203 SAMTools SNP 242118 242118 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.018%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C210:48 scaffold203 SAMTools SNP 242701 242701 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold203 SAMTools SNP 242733 242733 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 268180 268180 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 268768 268768 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold203 SAMTools SNP 269054 269054 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold203 SAMTools SNP 276545 276545 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold203 SAMTools SNP 277718 277718 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C8%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C172%2C0:99 scaffold203 SAMTools SNP 277916 277916 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold203 SAMTools SNP 277968 277968 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold203 SAMTools SNP 278155 278155 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold203 SAMTools SNP 278177 278177 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold203 SAMTools SNP 278650 278650 70.1 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C170%2C152%2C232%2C0%2C217:33 scaffold203 SAMTools SNP 278704 278704 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.077%2C3e-16%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C195:68 scaffold203 SAMTools SNP 279473 279473 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.25%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold203 SAMTools SNP 279745 279745 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 279775 279775 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold203 SAMTools SNP 279808 279808 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00048%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold203 SAMTools SNP 280157 280157 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 280163 280163 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 280845 280845 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold203 SAMTools SNP 281721 281721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 282244 282244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 282420 282420 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C78%2C1%2C46%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.38%2C5.2e-112%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold203 SAMTools SNP 284048 284048 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 284057 284057 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 284109 284109 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 284751 284751 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold203 SAMTools SNP 285170 285170 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold203 SAMTools SNP 285249 285249 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C48%2C0:93 scaffold203 SAMTools SNP 285532 285532 38.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold203 SAMTools SNP 288000 288000 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C39%2C0:75 scaffold203 SAMTools SNP 288708 288708 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.57%2C4.1e-13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C225:42 scaffold203 SAMTools SNP 288803 288803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold203 SAMTools SNP 289170 289170 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5.2e-07%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C186:46 scaffold203 SAMTools SNP 289509 289509 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold203 SAMTools SNP 292866 292866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C199%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 293946 293946 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold203 SAMTools SNP 294032 294032 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C10%2C2%2C10%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold203 SAMTools SNP 294884 294884 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C54%3BMQ%3D49%3BFQ%3D21%3BPV4%3D6e-06%2C2.3e-05%2C0.28%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold203 SAMTools SNP 295355 295355 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold203 SAMTools SNP 295364 295364 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold203 SAMTools SNP 296032 296032 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold203 SAMTools SNP 296595 296595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C177%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 299206 299206 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 299587 299587 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 300021 300021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 300576 300576 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold203 SAMTools SNP 300651 300651 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D2%2C1%2C27%2C14%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold203 SAMTools SNP 301072 301072 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C18%2C32%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold203 SAMTools SNP 301549 301549 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold203 SAMTools SNP 301672 301672 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C4%2C123%2C21%3BMQ%3D50%3BFQ%3D-178%3BPV4%3D0.015%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold203 SAMTools SNP 302960 302960 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C251%2C88%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 303002 303002 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D153%2C62%2C1%2C62%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1e-25%2C2.9e-24%2C1%2C6.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold203 SAMTools SNP 304699 304699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C11%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold203 SAMTools SNP 304837 304837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold203 SAMTools SNP 305641 305641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 305668 305668 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C197%2C17%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 305695 305695 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C56%3BMQ%3D50%3BFQ%3D-247%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold203 SAMTools SNP 305903 305903 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C4%2C11%2C49%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold203 SAMTools SNP 306920 306920 223 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C29%2C18%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold203 SAMTools SNP 313238 313238 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold203 SAMTools SNP 314432 314432 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 314449 314449 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 315183 315183 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C25%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1e-09%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 315771 315771 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C13%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 315804 315804 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold203 SAMTools SNP 315857 315857 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.25%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold203 SAMTools SNP 316277 316277 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 316322 316322 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold203 SAMTools SNP 317644 317644 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold203 SAMTools SNP 317800 317800 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold203 SAMTools SNP 317850 317850 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 318007 318007 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 318290 318290 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold203 SAMTools SNP 320487 320487 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold203 SAMTools SNP 321142 321142 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C0.34%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold203 SAMTools SNP 321196 321196 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.33%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C190:99 scaffold203 SAMTools SNP 321241 321241 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.44%2C0.00014%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold203 SAMTools SNP 321551 321551 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold203 SAMTools SNP 321972 321972 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.00071%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold203 SAMTools SNP 321981 321981 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C212:99 scaffold203 SAMTools SNP 322749 322749 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 324892 324892 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.092%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold203 SAMTools SNP 324898 324898 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.47%2C0.024%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C207:75 scaffold203 SAMTools SNP 324900 324900 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.072%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C208:34 scaffold203 SAMTools SNP 326270 326270 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold203 SAMTools SNP 326321 326321 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold203 SAMTools SNP 326383 326383 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1845%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1270%2C5%2C565%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.3%2C0.35%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold203 SAMTools SNP 326971 326971 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6084%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2715%2C37%2C3299%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.3e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 329780 329780 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold203 SAMTools SNP 331305 331305 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C33%2C0:59 scaffold203 SAMTools SNP 333393 333393 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 333842 333842 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C6.9e-05%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold203 SAMTools SNP 333845 333845 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.31%2C0.36%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold203 SAMTools SNP 334684 334684 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C0%2C14%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.047%2C3.1e-05%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold203 SAMTools SNP 335183 335183 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C234:63 scaffold203 SAMTools SNP 336333 336333 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold203 SAMTools SNP 337961 337961 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold203 SAMTools SNP 357314 357314 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C10%3BMQ%3D46%3BFQ%3D169%3BPV4%3D0.13%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold203 SAMTools SNP 357489 357489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C8%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.63%2C0.18%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold203 SAMTools SNP 357499 357499 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.63%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold203 SAMTools SNP 357530 357530 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.66%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold203 SAMTools SNP 361908 361908 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold203 SAMTools SNP 361936 361936 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 404654 404654 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 405762 405762 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold203 SAMTools SNP 407669 407669 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold203 SAMTools SNP 409310 409310 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold203 SAMTools SNP 420746 420746 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold203 SAMTools SNP 425036 425036 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 426735 426735 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 426754 426754 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 426843 426843 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 427239 427239 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold203 SAMTools SNP 427249 427249 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.075%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold203 SAMTools SNP 427263 427263 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold203 SAMTools SNP 428803 428803 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold203 SAMTools SNP 431563 431563 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 431576 431576 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 432508 432508 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold203 SAMTools SNP 433049 433049 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold203 SAMTools SNP 433463 433463 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 433956 433956 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 433980 433980 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 436096 436096 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 436097 436097 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold203 SAMTools SNP 439014 439014 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold203 SAMTools SNP 439050 439050 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold203 SAMTools SNP 439580 439580 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold203 SAMTools SNP 440164 440164 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C195:99 scaffold203 SAMTools SNP 440247 440247 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold203 SAMTools SNP 448345 448345 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 455235 455235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 456451 456451 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 456472 456472 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 459561 459561 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 459582 459582 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold203 SAMTools SNP 460078 460078 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold203 SAMTools SNP 460091 460091 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold203 SAMTools SNP 461748 461748 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.33%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold203 SAMTools SNP 466818 466818 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C30%3BMQ%3D13%3BFQ%3D-105%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C78%2C0:95 scaffold203 SAMTools SNP 470978 470978 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.044%2C2.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold203 SAMTools SNP 481590 481590 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold203 SAMTools SNP 522243 522243 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold203 SAMTools SNP 523908 523908 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold203 SAMTools SNP 524159 524159 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 526798 526798 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 526985 526985 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold203 SAMTools SNP 532065 532065 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C249:31 scaffold203 SAMTools SNP 532720 532720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 532751 532751 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 532805 532805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.051%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 533136 533136 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C239:99 scaffold203 SAMTools SNP 533708 533708 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold203 SAMTools SNP 533717 533717 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 533732 533732 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold203 SAMTools SNP 534123 534123 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 535452 535452 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C2%2C32%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold203 SAMTools SNP 536015 536015 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold203 SAMTools SNP 544911 544911 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C2%2C23%3BMQ%3D43%3BFQ%3D207%3BPV4%3D0.45%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C238:99 scaffold203 SAMTools SNP 570345 570345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold203 SAMTools SNP 572297 572297 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold203 SAMTools SNP 575509 575509 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C5.5e-05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C29:32 scaffold203 SAMTools SNP 576077 576077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold203 SAMTools SNP 576167 576167 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 576179 576179 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold203 SAMTools SNP 577692 577692 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 577713 577713 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold203 SAMTools SNP 577719 577719 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 577748 577748 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold203 SAMTools SNP 579110 579110 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold203 SAMTools SNP 579123 579123 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold203 SAMTools SNP 579823 579823 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C35:38 scaffold203 SAMTools SNP 588971 588971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 589012 589012 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 592159 592159 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold203 SAMTools SNP 599488 599488 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold203 SAMTools SNP 600981 600981 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 601089 601089 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold203 SAMTools SNP 601539 601539 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.097%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold203 SAMTools SNP 601565 601565 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 603334 603334 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C214:34 scaffold203 SAMTools SNP 603430 603430 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 606126 606126 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold203 SAMTools SNP 606494 606494 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold203 SAMTools SNP 606545 606545 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold203 SAMTools SNP 607237 607237 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 607893 607893 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 608063 608063 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 608926 608926 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold203 SAMTools SNP 609361 609361 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold203 SAMTools SNP 609527 609527 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 610050 610050 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold203 SAMTools SNP 610118 610118 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold203 SAMTools SNP 610237 610237 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold203 SAMTools SNP 610247 610247 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.026%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold203 SAMTools SNP 611413 611413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold203 SAMTools SNP 611450 611450 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 611477 611477 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold203 SAMTools SNP 611731 611731 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C202:99 scaffold203 SAMTools SNP 612479 612479 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 612520 612520 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold203 SAMTools SNP 614585 614585 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 614646 614646 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C12%2C0:21 scaffold203 SAMTools SNP 614995 614995 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold203 SAMTools SNP 615960 615960 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold203 SAMTools SNP 616024 616024 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold203 SAMTools SNP 617640 617640 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 617649 617649 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0076%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold203 SAMTools SNP 617956 617956 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold203 SAMTools SNP 618878 618878 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 618917 618917 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 619019 619019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold203 SAMTools SNP 619891 619891 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold203 SAMTools SNP 635449 635449 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 639262 639262 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold203 SAMTools SNP 642118 642118 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 642140 642140 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 642445 642445 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 642459 642459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 643881 643881 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold203 SAMTools SNP 643984 643984 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold203 SAMTools SNP 644409 644409 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 644416 644416 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 646939 646939 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold203 SAMTools SNP 646947 646947 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold203 SAMTools SNP 646976 646976 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 647512 647512 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold203 SAMTools SNP 647578 647578 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.047%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold203 SAMTools SNP 647591 647591 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C207:72 scaffold203 SAMTools SNP 651571 651571 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold203 SAMTools SNP 652268 652268 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold203 SAMTools SNP 652737 652737 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold203 SAMTools SNP 652995 652995 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold203 SAMTools SNP 653021 653021 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C0.47%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C234:99 scaffold203 SAMTools SNP 653169 653169 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.52%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C247:99 scaffold203 SAMTools SNP 653172 653172 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.065%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C232:99 scaffold203 SAMTools SNP 653336 653336 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.071%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold203 SAMTools SNP 656601 656601 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 656814 656814 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 656852 656852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 656862 656862 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold203 SAMTools SNP 657425 657425 88 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold203 SAMTools SNP 657518 657518 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 657793 657793 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C68:43 scaffold203 SAMTools SNP 657794 657794 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C86:40 scaffold203 SAMTools SNP 657921 657921 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold203 SAMTools SNP 658186 658186 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold203 SAMTools SNP 658413 658413 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C22%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold203 SAMTools SNP 659112 659112 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold203 SAMTools SNP 659116 659116 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold203 SAMTools SNP 659171 659171 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 659579 659579 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold203 SAMTools SNP 660181 660181 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C252:69 scaffold203 SAMTools SNP 660184 660184 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C115:99 scaffold203 SAMTools SNP 660198 660198 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.6%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold203 SAMTools SNP 660413 660413 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold203 SAMTools SNP 660440 660440 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold203 SAMTools SNP 660699 660699 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D46%3BFQ%3D44%3BPV4%3D0.14%2C0.42%2C0.29%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C71:74 scaffold203 SAMTools SNP 660705 660705 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold203 SAMTools SNP 660732 660732 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C6%3BMQ%3D41%3BFQ%3D77%3BPV4%3D0.22%2C0.18%2C0.02%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C185:99 scaffold203 SAMTools SNP 662768 662768 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C42:45 scaffold203 SAMTools SNP 662946 662946 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold203 SAMTools SNP 663078 663078 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.43%2C4.7e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C163:76 scaffold203 SAMTools SNP 665003 665003 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold203 SAMTools SNP 665046 665046 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold203 SAMTools SNP 665205 665205 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold203 SAMTools SNP 665235 665235 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.00013%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C118:53 scaffold203 SAMTools SNP 665240 665240 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold203 SAMTools SNP 665480 665480 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C155:99 scaffold203 SAMTools SNP 665557 665557 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold203 SAMTools SNP 665941 665941 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold203 SAMTools SNP 665967 665967 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold203 SAMTools SNP 666711 666711 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C1.2e-05%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold203 SAMTools SNP 666717 666717 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C84:87 scaffold203 SAMTools SNP 666774 666774 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.15%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold203 SAMTools SNP 668403 668403 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold203 SAMTools SNP 668795 668795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold203 SAMTools SNP 668820 668820 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold203 SAMTools SNP 669347 669347 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.16%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C127:67 scaffold203 SAMTools SNP 669478 669478 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D29%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.17%2C0.085%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C23:26 scaffold203 SAMTools SNP 670353 670353 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold203 SAMTools SNP 670368 670368 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C3%3BMQ%3D23%3BFQ%3D18%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C45:48 scaffold203 SAMTools SNP 670882 670882 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D23%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C72%2C0:99 scaffold204 SAMTools SNP 1425 1425 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 6257 6257 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold204 SAMTools SNP 12380 12380 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 13220 13220 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.24%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold204 SAMTools SNP 13268 13268 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold204 SAMTools SNP 13967 13967 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C12%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold204 SAMTools SNP 14026 14026 176 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C30%2C0:57 scaffold204 SAMTools SNP 14404 14404 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 14841 14841 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold204 SAMTools SNP 15866 15866 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold204 SAMTools SNP 15922 15922 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 16593 16593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold204 SAMTools SNP 16656 16656 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold204 SAMTools SNP 17178 17178 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold204 SAMTools SNP 17223 17223 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 17549 17549 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 17981 17981 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold204 SAMTools SNP 17993 17993 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold204 SAMTools SNP 18042 18042 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold204 SAMTools SNP 18778 18778 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 18817 18817 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold204 SAMTools SNP 20426 20426 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 21126 21126 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold204 SAMTools SNP 21526 21526 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold204 SAMTools SNP 21606 21606 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold204 SAMTools SNP 21622 21622 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold204 SAMTools SNP 21816 21816 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold204 SAMTools SNP 24352 24352 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C235:99 scaffold204 SAMTools SNP 25176 25176 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C200:99 scaffold204 SAMTools SNP 25556 25556 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold204 SAMTools SNP 25592 25592 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold204 SAMTools SNP 27456 27456 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 27578 27578 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C32%2C46%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 29279 29279 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.37%2C1.2e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C119:60 scaffold204 SAMTools SNP 37069 37069 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold204 SAMTools SNP 37517 37517 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C72%2C0:99 scaffold204 SAMTools SNP 37730 37730 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold204 SAMTools SNP 38719 38719 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold204 SAMTools SNP 39583 39583 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold204 SAMTools SNP 40080 40080 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold204 SAMTools SNP 40337 40337 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold204 SAMTools SNP 40991 40991 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold204 SAMTools SNP 41075 41075 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold204 SAMTools SNP 41110 41110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold204 SAMTools SNP 41850 41850 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.056%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold204 SAMTools SNP 46983 46983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold204 SAMTools SNP 48719 48719 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold204 SAMTools SNP 50366 50366 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D0.33%2C1%2C0.21%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold204 SAMTools SNP 55192 55192 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.17%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold204 SAMTools SNP 55388 55388 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold204 SAMTools SNP 58593 58593 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 59259 59259 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 59411 59411 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold204 SAMTools SNP 59951 59951 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.067%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold204 SAMTools SNP 60003 60003 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.15%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 61120 61120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold204 SAMTools SNP 61282 61282 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold204 SAMTools SNP 61445 61445 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold204 SAMTools SNP 61527 61527 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C30%2C0:57 scaffold204 SAMTools SNP 61559 61559 28.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold204 SAMTools SNP 62600 62600 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold204 SAMTools SNP 63443 63443 12 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C38%2C32%2C44%2C0%2C38:9 scaffold204 SAMTools SNP 63492 63492 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C21%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C226%2C0:99 scaffold204 SAMTools SNP 65672 65672 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.24%2C2.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold204 SAMTools SNP 65721 65721 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C21%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1.6e-37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold204 SAMTools SNP 66221 66221 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.32%2C2.3e-06%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold204 SAMTools SNP 66275 66275 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C3%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.36%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold204 SAMTools SNP 66424 66424 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.016%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold204 SAMTools SNP 67056 67056 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C214:99 scaffold204 SAMTools SNP 67510 67510 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold204 SAMTools SNP 67519 67519 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 67613 67613 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C229:99 scaffold204 SAMTools SNP 70021 70021 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold204 SAMTools SNP 72589 72589 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 73323 73323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 82981 82981 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold204 SAMTools SNP 87634 87634 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold204 SAMTools SNP 89376 89376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold204 SAMTools SNP 92073 92073 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 92085 92085 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 92091 92091 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold204 SAMTools SNP 92676 92676 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C215:99 scaffold204 SAMTools SNP 92790 92790 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 93310 93310 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C0%2C43%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00093%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold204 SAMTools SNP 93397 93397 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C84%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.36%2C1.5e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold204 SAMTools SNP 96501 96501 70.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold204 SAMTools SNP 99627 99627 35.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold204 SAMTools SNP 99674 99674 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.054%2C8.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C162:99 scaffold204 SAMTools SNP 99760 99760 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C10%2C121%2C6%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.44%2C1.7e-221%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold204 SAMTools SNP 100133 100133 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C12%2C108%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C5.8e-59%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 100310 100310 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C140%2C19%2C68%3BMQ%3D27%3BFQ%3D74%3BPV4%3D0.88%2C1%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold204 SAMTools SNP 100767 100767 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold204 SAMTools SNP 101476 101476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C45%2C17%2C33%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.46%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 102347 102347 54.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D25%3BFQ%3D-42%3BPV4%3D1%2C0.31%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold204 SAMTools SNP 102389 102389 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D37%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C39%2C0:75 scaffold204 SAMTools SNP 103145 103145 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 103790 103790 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold204 SAMTools SNP 104176 104176 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C20%3BMQ%3D12%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C105%2C0:57 scaffold204 SAMTools SNP 105704 105704 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C1%2C22%3BMQ%3D48%3BFQ%3D202%3BPV4%3D5.2e-05%2C0.47%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold204 SAMTools SNP 106513 106513 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C28%3BMQ%3D46%3BFQ%3D204%3BPV4%3D0.39%2C0.094%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C231:99 scaffold204 SAMTools SNP 106555 106555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D42%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold204 SAMTools SNP 107309 107309 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C2%3BMQ%3D41%3BFQ%3D53%3BPV4%3D0.33%2C0.29%2C0.38%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold204 SAMTools SNP 107321 107321 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C4%3BMQ%3D42%3BFQ%3D134%3BPV4%3D0.36%2C0.36%2C0.14%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C204:99 scaffold204 SAMTools SNP 107942 107942 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C0%2C5%3BMQ%3D38%3BFQ%3D67%3BPV4%3D0.0054%2C1%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold204 SAMTools SNP 112655 112655 8.25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C2%2C0:4 scaffold204 SAMTools SNP 116504 116504 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold204 SAMTools SNP 118527 118527 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 129198 129198 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold204 SAMTools SNP 131662 131662 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C185:99 scaffold204 SAMTools SNP 131685 131685 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C184:99 scaffold204 SAMTools SNP 132107 132107 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold204 SAMTools SNP 132133 132133 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.6%2C5.2e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold204 SAMTools SNP 132148 132148 65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.6%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C186:98 scaffold204 SAMTools SNP 138550 138550 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.028%2C0.001%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C190:34 scaffold204 SAMTools SNP 138563 138563 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold204 SAMTools SNP 139313 139313 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold204 SAMTools SNP 139356 139356 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold204 SAMTools SNP 139647 139647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold204 SAMTools SNP 139688 139688 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 140170 140170 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold204 SAMTools SNP 140429 140429 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold204 SAMTools SNP 140678 140678 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 140961 140961 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C12%2C0:21 scaffold204 SAMTools SNP 141156 141156 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C96%2C0:99 scaffold204 SAMTools SNP 180181 180181 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold204 SAMTools SNP 183035 183035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold204 SAMTools SNP 183185 183185 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C19%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.55%2C0.025%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold204 SAMTools SNP 185062 185062 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0206%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.042%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold204 SAMTools SNP 185127 185127 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0089%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.55%2C0.00029%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold204 SAMTools SNP 185137 185137 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.55%2C0.002%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold204 SAMTools SNP 185646 185646 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C2%2C11%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.045%2C1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold204 SAMTools SNP 185778 185778 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C5%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.69%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold204 SAMTools SNP 186844 186844 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold204 SAMTools SNP 186847 186847 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold204 SAMTools SNP 187483 187483 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold204 SAMTools SNP 188127 188127 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0128%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.46%2C0.00021%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold204 SAMTools SNP 188133 188133 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C0.00089%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold204 SAMTools SNP 193195 193195 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C11%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0036%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C233:99 scaffold204 SAMTools SNP 194918 194918 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold204 SAMTools SNP 197145 197145 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C0%2C19%3BMQ%3D44%3BFQ%3D180%3BPV4%3D2.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold204 SAMTools SNP 197166 197166 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C18%2C0%2C19%3BMQ%3D43%3BFQ%3D156%3BPV4%3D1.7e-07%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold204 SAMTools SNP 197456 197456 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C10%2C0%3BMQ%3D49%3BFQ%3D153%3BPV4%3D0.00076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold204 SAMTools SNP 197459 197459 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C10%2C1%3BMQ%3D49%3BFQ%3D190%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold204 SAMTools SNP 198025 198025 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold204 SAMTools SNP 198178 198178 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C2%2C4%3BMQ%3D49%3BFQ%3D103%3BPV4%3D0.67%2C0.038%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold204 SAMTools SNP 200884 200884 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.39%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 201266 201266 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C72%2C0:99 scaffold204 SAMTools SNP 201548 201548 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold204 SAMTools SNP 201598 201598 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold204 SAMTools SNP 201988 201988 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold204 SAMTools SNP 212051 212051 7.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D23%3BFQ%3D-27%3BPV4%3D0.4%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C0:4 scaffold204 SAMTools SNP 212053 212053 7.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D23%3BFQ%3D-27%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C0:4 scaffold204 SAMTools SNP 212497 212497 34.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold204 SAMTools SNP 269385 269385 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 269423 269423 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 282178 282178 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 282204 282204 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 291174 291174 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 293662 293662 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 293679 293679 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold204 SAMTools SNP 293831 293831 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 293854 293854 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C112:54 scaffold204 SAMTools SNP 293861 293861 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C76:43 scaffold204 SAMTools SNP 293890 293890 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold204 SAMTools SNP 294055 294055 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 294072 294072 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 294154 294154 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold204 SAMTools SNP 294471 294471 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 294537 294537 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold204 SAMTools SNP 294561 294561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold204 SAMTools SNP 294730 294730 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold204 SAMTools SNP 298317 298317 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.32%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold204 SAMTools SNP 298958 298958 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold204 SAMTools SNP 298995 298995 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold204 SAMTools SNP 299185 299185 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 302120 302120 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold204 SAMTools SNP 303171 303171 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 323285 323285 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold204 SAMTools SNP 323400 323400 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold204 SAMTools SNP 342556 342556 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold204 SAMTools SNP 365802 365802 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 379083 379083 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold204 SAMTools SNP 379459 379459 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 383461 383461 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold204 SAMTools SNP 384379 384379 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold204 SAMTools SNP 434800 434800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 439483 439483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 440350 440350 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold204 SAMTools SNP 442821 442821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 443335 443335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 443382 443382 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold204 SAMTools SNP 443472 443472 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold204 SAMTools SNP 444875 444875 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 444897 444897 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold204 SAMTools SNP 447115 447115 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 448081 448081 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold204 SAMTools SNP 462006 462006 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.3%2C2.8e-08%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold204 SAMTools SNP 475328 475328 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 475331 475331 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 477226 477226 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0093%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C21:24 scaffold204 SAMTools SNP 477232 477232 4.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0169%3BAF1%3D0.5039%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-9.62%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C18:23 scaffold204 SAMTools SNP 478565 478565 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C0%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold204 SAMTools SNP 478598 478598 53.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold204 SAMTools SNP 478858 478858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold204 SAMTools SNP 478897 478897 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 479284 479284 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C88%2C1%2C37%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.44%2C1.2e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold204 SAMTools SNP 481822 481822 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-05%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 481826 481826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold204 SAMTools SNP 481894 481894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C53%2C40%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 482490 482490 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C39%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold204 SAMTools SNP 482652 482652 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold204 SAMTools SNP 482671 482671 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold204 SAMTools SNP 483119 483119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.17%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 483167 483167 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C2%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold204 SAMTools SNP 483793 483793 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold204 SAMTools SNP 483825 483825 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold204 SAMTools SNP 485828 485828 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D23%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.54%2C0.0018%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold204 SAMTools SNP 486291 486291 61.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold204 SAMTools SNP 488320 488320 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C38%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold204 SAMTools SNP 488353 488353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold204 SAMTools SNP 488585 488585 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold204 SAMTools SNP 488601 488601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold204 SAMTools SNP 489472 489472 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 490007 490007 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 490455 490455 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 490527 490527 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold204 SAMTools SNP 491288 491288 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D150%3BPV4%3D6.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold204 SAMTools SNP 491291 491291 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold204 SAMTools SNP 496141 496141 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold204 SAMTools SNP 501706 501706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 501928 501928 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold204 SAMTools SNP 509685 509685 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 509689 509689 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C18%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold204 SAMTools SNP 515203 515203 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.58%2C8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold204 SAMTools SNP 515459 515459 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C36%2C0:69 scaffold204 SAMTools SNP 515571 515571 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold204 SAMTools SNP 515819 515819 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 515971 515971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C36%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C0.0083%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 516061 516061 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C40%2C6%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0014%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 516093 516093 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 516808 516808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 516826 516826 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 516880 516880 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C48%2C0%2C17%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.57%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold204 SAMTools SNP 516892 516892 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold204 SAMTools SNP 516901 516901 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C23%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C254:99 scaffold204 SAMTools SNP 517312 517312 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold204 SAMTools SNP 517753 517753 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C174:99 scaffold204 SAMTools SNP 518038 518038 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 518408 518408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold204 SAMTools SNP 518471 518471 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold204 SAMTools SNP 519731 519731 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold204 SAMTools SNP 520016 520016 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 520046 520046 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 520103 520103 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 520160 520160 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold204 SAMTools SNP 521169 521169 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold204 SAMTools SNP 521199 521199 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 521306 521306 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0001%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C32:35 scaffold204 SAMTools SNP 523458 523458 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 523827 523827 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C66:69 scaffold204 SAMTools SNP 525822 525822 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C15%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.53%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold204 SAMTools SNP 526036 526036 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold204 SAMTools SNP 526037 526037 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold204 SAMTools SNP 526241 526241 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C90:93 scaffold204 SAMTools SNP 526726 526726 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.09%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold204 SAMTools SNP 527993 527993 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C210:72 scaffold204 SAMTools SNP 528277 528277 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C218:99 scaffold204 SAMTools SNP 528942 528942 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 529046 529046 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.076%2C0.48%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C207:99 scaffold204 SAMTools SNP 529073 529073 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.22%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C131:99 scaffold204 SAMTools SNP 529339 529339 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold204 SAMTools SNP 529351 529351 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold204 SAMTools SNP 529429 529429 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0001%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold204 SAMTools SNP 529435 529435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C14%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0007%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold204 SAMTools SNP 530275 530275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C8%2C14%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.28%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold204 SAMTools SNP 530383 530383 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold204 SAMTools SNP 531081 531081 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold204 SAMTools SNP 532083 532083 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C16%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.66%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold204 SAMTools SNP 532890 532890 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold204 SAMTools SNP 532935 532935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.58%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold204 SAMTools SNP 533541 533541 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold204 SAMTools SNP 533885 533885 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold204 SAMTools SNP 535377 535377 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C21%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.65%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold204 SAMTools SNP 535411 535411 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.024%2C0.0062%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold204 SAMTools SNP 535440 535440 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 535458 535458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 535661 535661 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold204 SAMTools SNP 535664 535664 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.078%2C0.24%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold204 SAMTools SNP 535685 535685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold204 SAMTools SNP 536081 536081 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C25%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D3.5e-07%2C3.6e-16%2C1%2C4.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold204 SAMTools SNP 536430 536430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold204 SAMTools SNP 536451 536451 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 536793 536793 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold204 SAMTools SNP 555649 555649 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.011%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold204 SAMTools SNP 555667 555667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold204 SAMTools SNP 555763 555763 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold204 SAMTools SNP 556454 556454 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold204 SAMTools SNP 556628 556628 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C33%2C0:63 scaffold204 SAMTools SNP 556922 556922 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C30%2C0:57 scaffold204 SAMTools SNP 557211 557211 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C45%2C0:87 scaffold204 SAMTools SNP 558072 558072 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 558074 558074 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C31:34 scaffold204 SAMTools SNP 561541 561541 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold204 SAMTools SNP 573429 573429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold204 SAMTools SNP 573506 573506 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 573509 573509 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 574472 574472 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.5e-13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C106:78 scaffold204 SAMTools SNP 574760 574760 76.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold204 SAMTools SNP 575128 575128 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D13%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C48%2C0:61 scaffold204 SAMTools SNP 575174 575174 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D42%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold204 SAMTools SNP 575461 575461 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C11%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold204 SAMTools SNP 575491 575491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.1%2C0.0033%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold204 SAMTools SNP 575492 575492 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C23%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.11%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold204 SAMTools SNP 575913 575913 140 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D48%3BFQ%3D-46;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C96%2C77%2C191%2C0%2C164:35 scaffold204 SAMTools SNP 576038 576038 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold204 SAMTools SNP 577470 577470 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold204 SAMTools SNP 577893 577893 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5.1e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold204 SAMTools SNP 578048 578048 45.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold204 SAMTools SNP 578152 578152 16.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold204 SAMTools SNP 583943 583943 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 583953 583953 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 584034 584034 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 584058 584058 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 586000 586000 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 586026 586026 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold204 SAMTools SNP 586389 586389 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold204 SAMTools SNP 591153 591153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold204 SAMTools SNP 591213 591213 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 607146 607146 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 608651 608651 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 608692 608692 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 609452 609452 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C51%2C0:99 scaffold204 SAMTools SNP 613615 613615 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.45%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold204 SAMTools SNP 627591 627591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C191%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 628118 628118 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C111%2C5%2C80%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.44%2C8.4e-107%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold204 SAMTools SNP 628801 628801 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 628873 628873 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold204 SAMTools SNP 629674 629674 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold204 SAMTools SNP 629704 629704 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0073%2C0.39%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold204 SAMTools SNP 632576 632576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C69%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold204 SAMTools SNP 632604 632604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold204 SAMTools SNP 635381 635381 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold204 SAMTools SNP 635726 635726 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 636155 636155 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 636170 636170 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold204 SAMTools SNP 636270 636270 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 636632 636632 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold204 SAMTools SNP 639095 639095 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold204 SAMTools SNP 641947 641947 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold204 SAMTools SNP 643102 643102 26.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold204 SAMTools SNP 643201 643201 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold204 SAMTools SNP 643213 643213 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.56%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold204 SAMTools SNP 643227 643227 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C7%2C84%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 644458 644458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C98%2C118%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 644644 644644 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C83%2C114%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 647680 647680 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 648530 648530 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold204 SAMTools SNP 648573 648573 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 650156 650156 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold204 SAMTools SNP 650185 650185 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold204 SAMTools SNP 650715 650715 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold204 SAMTools SNP 650775 650775 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold204 SAMTools SNP 650790 650790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold204 SAMTools SNP 651567 651567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold204 SAMTools SNP 651609 651609 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.13%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C251:99 scaffold204 SAMTools SNP 651648 651648 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold204 SAMTools SNP 652834 652834 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold204 SAMTools SNP 652846 652846 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold204 SAMTools SNP 658445 658445 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 661500 661500 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 676263 676263 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold204 SAMTools SNP 676323 676323 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 676338 676338 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold204 SAMTools SNP 676717 676717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold204 SAMTools SNP 676769 676769 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C4e-06%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold204 SAMTools SNP 676922 676922 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C34%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.00016%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold204 SAMTools SNP 677823 677823 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C36%2C0%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C14%2C0:25 scaffold204 SAMTools SNP 677902 677902 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C34%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold204 SAMTools SNP 678136 678136 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C30%2C0:57 scaffold204 SAMTools SNP 678185 678185 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold204 SAMTools SNP 678304 678304 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.56%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold204 SAMTools SNP 679964 679964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 680599 680599 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 680618 680618 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.55%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C249:92 scaffold204 SAMTools SNP 680622 680622 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.52%2C0.02%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold204 SAMTools SNP 680624 680624 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.24%2C0.085%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold204 SAMTools SNP 680687 680687 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 681118 681118 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C248:99 scaffold204 SAMTools SNP 681131 681131 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 682758 682758 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 683774 683774 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold204 SAMTools SNP 683795 683795 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold204 SAMTools SNP 686163 686163 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C21%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.23%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C167:99 scaffold204 SAMTools SNP 686175 686175 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C240:99 scaffold204 SAMTools SNP 686415 686415 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C127:99 scaffold204 SAMTools SNP 686907 686907 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 686929 686929 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 687823 687823 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.2%2C0.028%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold204 SAMTools SNP 688503 688503 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.016%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold204 SAMTools SNP 688545 688545 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold204 SAMTools SNP 689843 689843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 690346 690346 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold204 SAMTools SNP 690352 690352 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold204 SAMTools SNP 692365 692365 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold204 SAMTools SNP 692406 692406 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold204 SAMTools SNP 692572 692572 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold204 SAMTools SNP 692581 692581 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold204 SAMTools SNP 692638 692638 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold204 SAMTools SNP 692889 692889 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 693240 693240 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 693883 693883 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 693893 693893 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold204 SAMTools SNP 694544 694544 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 694709 694709 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 694730 694730 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 694751 694751 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold204 SAMTools SNP 695353 695353 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0052%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold204 SAMTools SNP 695361 695361 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold204 SAMTools SNP 696353 696353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold204 SAMTools SNP 698057 698057 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold204 SAMTools SNP 698078 698078 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold204 SAMTools SNP 710289 710289 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 710290 710290 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 710349 710349 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold204 SAMTools SNP 717585 717585 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C238:99 scaffold204 SAMTools SNP 717906 717906 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold204 SAMTools SNP 718168 718168 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold204 SAMTools SNP 718234 718234 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 719621 719621 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold204 SAMTools SNP 720422 720422 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold204 SAMTools SNP 720461 720461 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold204 SAMTools SNP 720594 720594 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold204 SAMTools SNP 722106 722106 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.17%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C137:99 scaffold204 SAMTools SNP 723216 723216 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C224:40 scaffold204 SAMTools SNP 723585 723585 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.13%2C5.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C155:54 scaffold204 SAMTools SNP 723774 723774 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold204 SAMTools SNP 724444 724444 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold204 SAMTools SNP 724641 724641 32.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold204 SAMTools SNP 732351 732351 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 733445 733445 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 734462 734462 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold204 SAMTools SNP 734464 734464 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold204 SAMTools SNP 736512 736512 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.5%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold204 SAMTools SNP 736513 736513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 741888 741888 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold204 SAMTools SNP 742340 742340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 742586 742586 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.11%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C6:9 scaffold204 SAMTools SNP 742592 742592 110 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C30%2C18%2C137%2C0%2C134:21 scaffold204 SAMTools SNP 743312 743312 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 744174 744174 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold204 SAMTools SNP 770436 770436 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 773157 773157 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold204 SAMTools SNP 773490 773490 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold204 SAMTools SNP 773496 773496 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold204 SAMTools SNP 780113 780113 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 780115 780115 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 780341 780341 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold204 SAMTools SNP 780380 780380 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold204 SAMTools SNP 780671 780671 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold204 SAMTools SNP 780726 780726 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 780736 780736 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 783341 783341 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 784331 784331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C59%2C6%3BMQ%3D50%3BFQ%3D-193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold204 SAMTools SNP 784354 784354 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 784410 784410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C9%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 830312 830312 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D43%3BFQ%3D6.98%3BPV4%3D0.25%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C82:33 scaffold204 SAMTools SNP 833358 833358 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold204 SAMTools SNP 840538 840538 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 840590 840590 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold204 SAMTools SNP 845974 845974 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold204 SAMTools SNP 846016 846016 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold204 SAMTools SNP 846928 846928 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold204 SAMTools SNP 852935 852935 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold204 SAMTools SNP 859529 859529 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 859541 859541 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 860954 860954 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold204 SAMTools SNP 860965 860965 51.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold204 SAMTools SNP 876124 876124 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 883533 883533 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C136:53 scaffold204 SAMTools SNP 887229 887229 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold204 SAMTools SNP 926345 926345 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold204 SAMTools SNP 936766 936766 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold204 SAMTools SNP 936915 936915 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.017%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold204 SAMTools SNP 936930 936930 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 940437 940437 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold204 SAMTools SNP 940446 940446 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold204 SAMTools SNP 942163 942163 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold204 SAMTools SNP 944309 944309 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C48%2C17%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D6.7e-05%2C0.05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold204 SAMTools SNP 944338 944338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C39%2C64%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 946851 946851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 946877 946877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C53%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 946901 946901 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 947207 947207 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold204 SAMTools SNP 966389 966389 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold204 SAMTools SNP 967494 967494 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold204 SAMTools SNP 969972 969972 61.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold204 SAMTools SNP 970095 970095 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 970541 970541 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 970584 970584 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 982391 982391 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 982408 982408 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold204 SAMTools SNP 983495 983495 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold204 SAMTools SNP 984456 984456 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold204 SAMTools SNP 984867 984867 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold204 SAMTools SNP 984875 984875 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 986067 986067 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1004818 1004818 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold204 SAMTools SNP 1005453 1005453 69.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold204 SAMTools SNP 1005548 1005548 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold204 SAMTools SNP 1005574 1005574 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold204 SAMTools SNP 1005586 1005586 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold204 SAMTools SNP 1007504 1007504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1013134 1013134 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold204 SAMTools SNP 1014275 1014275 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold204 SAMTools SNP 1014501 1014501 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1014560 1014560 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 1033764 1033764 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C97:99 scaffold204 SAMTools SNP 1039501 1039501 85 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C137%2C255%2C0%2C239:99 scaffold204 SAMTools SNP 1039638 1039638 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1040308 1040308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1044347 1044347 41.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold204 SAMTools SNP 1045092 1045092 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.00068%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold204 SAMTools SNP 1047998 1047998 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C81%2C0:99 scaffold204 SAMTools SNP 1051397 1051397 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold204 SAMTools SNP 1051415 1051415 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1053537 1053537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1053582 1053582 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold204 SAMTools SNP 1054181 1054181 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1054229 1054229 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C50%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1054415 1054415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold204 SAMTools SNP 1054502 1054502 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C66%2C0:99 scaffold204 SAMTools SNP 1054550 1054550 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold204 SAMTools SNP 1054562 1054562 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.35%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C232:99 scaffold204 SAMTools SNP 1055014 1055014 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.00033%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold204 SAMTools SNP 1055457 1055457 187 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C26%2C8%2C211%2C0%2C208:33 scaffold204 SAMTools SNP 1056864 1056864 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.4%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold204 SAMTools SNP 1056894 1056894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 1056900 1056900 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold204 SAMTools SNP 1057710 1057710 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold204 SAMTools SNP 1057721 1057721 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold204 SAMTools SNP 1058186 1058186 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 1058268 1058268 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.017%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold204 SAMTools SNP 1061950 1061950 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.55%2C0.4%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold204 SAMTools SNP 1061951 1061951 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.29%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold204 SAMTools SNP 1063004 1063004 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold204 SAMTools SNP 1066095 1066095 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D724%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C502%2C1%2C106%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold204 SAMTools SNP 1066365 1066365 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C55%2C1%2C22%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0064%2C1%2C1%2C2.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold204 SAMTools SNP 1066381 1066381 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C8%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.21%2C0.028%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold204 SAMTools SNP 1066384 1066384 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C23%2C30%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.32%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold204 SAMTools SNP 1066743 1066743 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold204 SAMTools SNP 1066983 1066983 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.013%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold204 SAMTools SNP 1067013 1067013 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold204 SAMTools SNP 1067085 1067085 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1067372 1067372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1067514 1067514 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 1068213 1068213 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold204 SAMTools SNP 1068542 1068542 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 1068556 1068556 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold204 SAMTools SNP 1068962 1068962 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold204 SAMTools SNP 1068968 1068968 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold204 SAMTools SNP 1068992 1068992 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold204 SAMTools SNP 1069055 1069055 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold204 SAMTools SNP 1070974 1070974 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C25%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold204 SAMTools SNP 1071327 1071327 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C15%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.052%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold204 SAMTools SNP 1071939 1071939 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1071978 1071978 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.21%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold204 SAMTools SNP 1072596 1072596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C37%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold204 SAMTools SNP 1072644 1072644 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold204 SAMTools SNP 1072677 1072677 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold204 SAMTools SNP 1073374 1073374 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C244:99 scaffold204 SAMTools SNP 1073379 1073379 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.34%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C207:99 scaffold206 SAMTools SNP 38492 38492 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 47576 47576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 50943 50943 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold206 SAMTools SNP 50994 50994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold206 SAMTools SNP 54000 54000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold206 SAMTools SNP 54077 54077 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold206 SAMTools SNP 54949 54949 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold206 SAMTools SNP 54964 54964 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold206 SAMTools SNP 55549 55549 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold206 SAMTools SNP 55576 55576 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold206 SAMTools SNP 55932 55932 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold206 SAMTools SNP 55938 55938 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold206 SAMTools SNP 56687 56687 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0072%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.067%2C0.0017%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C240:36 scaffold206 SAMTools SNP 56742 56742 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold206 SAMTools SNP 57122 57122 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C160:99 scaffold206 SAMTools SNP 57653 57653 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 59371 59371 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold206 SAMTools SNP 59913 59913 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.14%2C0.46%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold206 SAMTools SNP 59935 59935 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold206 SAMTools SNP 61529 61529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.31%2C0.14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold206 SAMTools SNP 61565 61565 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold206 SAMTools SNP 62358 62358 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.041%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold206 SAMTools SNP 64604 64604 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 65193 65193 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold206 SAMTools SNP 67540 67540 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold206 SAMTools SNP 67554 67554 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold206 SAMTools SNP 67950 67950 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.33%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold206 SAMTools SNP 68545 68545 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C0.16%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold206 SAMTools SNP 68607 68607 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.61%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold206 SAMTools SNP 68627 68627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold206 SAMTools SNP 68640 68640 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold206 SAMTools SNP 70302 70302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold206 SAMTools SNP 70352 70352 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold206 SAMTools SNP 70777 70777 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C238:99 scaffold206 SAMTools SNP 71580 71580 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold206 SAMTools SNP 71617 71617 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold206 SAMTools SNP 75732 75732 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold206 SAMTools SNP 76363 76363 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.52%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold206 SAMTools SNP 76378 76378 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold206 SAMTools SNP 79434 79434 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold206 SAMTools SNP 84793 84793 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold206 SAMTools SNP 86743 86743 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold206 SAMTools SNP 86757 86757 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold206 SAMTools SNP 86781 86781 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.024%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold206 SAMTools SNP 86877 86877 70.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C12%2C0:21 scaffold206 SAMTools SNP 87757 87757 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D32%3BFQ%3D16.1%3BPV4%3D1%2C0.00066%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C112:46 scaffold206 SAMTools SNP 87798 87798 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D35%3BFQ%3D37.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C65:68 scaffold206 SAMTools SNP 91334 91334 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold206 SAMTools SNP 91391 91391 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold206 SAMTools SNP 92868 92868 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 96057 96057 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 96931 96931 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C30%2C0:54 scaffold206 SAMTools SNP 97009 97009 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold206 SAMTools SNP 97301 97301 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold206 SAMTools SNP 97370 97370 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 97420 97420 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold206 SAMTools SNP 111664 111664 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold206 SAMTools SNP 112094 112094 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold206 SAMTools SNP 112118 112118 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold206 SAMTools SNP 112834 112834 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C86:59 scaffold206 SAMTools SNP 114550 114550 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold206 SAMTools SNP 114569 114569 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 116226 116226 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold206 SAMTools SNP 118182 118182 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold206 SAMTools SNP 124500 124500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C36%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold206 SAMTools SNP 129413 129413 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C298%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold206 SAMTools SNP 131640 131640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D179%2C15%2C148%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold206 SAMTools SNP 131685 131685 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C169%2C1%2C121%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C4e-174%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold206 SAMTools SNP 143215 143215 52.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D827%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold206 SAMTools SNP 151967 151967 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C111%2C0:99 scaffold206 SAMTools SNP 152177 152177 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D762%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D315%2C2%2C398%2C40%3BMQ%3D50%3BFQ%3D104%3BPV4%3D4.7e-08%2C0%2C1%2C5.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold206 SAMTools SNP 161659 161659 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold206 SAMTools SNP 161966 161966 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold206 SAMTools SNP 168674 168674 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold206 SAMTools SNP 169149 169149 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold206 SAMTools SNP 169158 169158 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold206 SAMTools SNP 171687 171687 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold206 SAMTools SNP 174384 174384 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold206 SAMTools SNP 175418 175418 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold206 SAMTools SNP 175917 175917 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold206 SAMTools SNP 176279 176279 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold206 SAMTools SNP 176351 176351 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 176707 176707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 176710 176710 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 177008 177008 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold206 SAMTools SNP 177029 177029 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 177514 177514 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold206 SAMTools SNP 177556 177556 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 177631 177631 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold206 SAMTools SNP 177937 177937 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold206 SAMTools SNP 177985 177985 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold206 SAMTools SNP 178829 178829 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.4%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C242:49 scaffold206 SAMTools SNP 178831 178831 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C133:34 scaffold206 SAMTools SNP 178833 178833 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C81:81 scaffold206 SAMTools SNP 178842 178842 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0072%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C88:43 scaffold206 SAMTools SNP 178858 178858 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold206 SAMTools SNP 179289 179289 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 179706 179706 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold206 SAMTools SNP 179728 179728 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold206 SAMTools SNP 180466 180466 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold206 SAMTools SNP 180705 180705 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold206 SAMTools SNP 180719 180719 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold206 SAMTools SNP 181115 181115 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold206 SAMTools SNP 181314 181314 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold206 SAMTools SNP 184170 184170 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold206 SAMTools SNP 184604 184604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold206 SAMTools SNP 184622 184622 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold206 SAMTools SNP 184625 184625 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.31%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C163:99 scaffold206 SAMTools SNP 184928 184928 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold206 SAMTools SNP 187244 187244 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold206 SAMTools SNP 187616 187616 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold206 SAMTools SNP 187640 187640 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold206 SAMTools SNP 187877 187877 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C237:99 scaffold206 SAMTools SNP 187899 187899 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold206 SAMTools SNP 188322 188322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 188819 188819 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 189208 189208 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C192:99 scaffold206 SAMTools SNP 191355 191355 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold206 SAMTools SNP 191382 191382 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C202:99 scaffold206 SAMTools SNP 191803 191803 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold206 SAMTools SNP 191989 191989 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold206 SAMTools SNP 192093 192093 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C149:99 scaffold206 SAMTools SNP 192514 192514 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.22%2C1.2e-10%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold206 SAMTools SNP 192538 192538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold206 SAMTools SNP 192785 192785 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C44%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold206 SAMTools SNP 192806 192806 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.31%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold206 SAMTools SNP 192863 192863 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold206 SAMTools SNP 193456 193456 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold206 SAMTools SNP 193486 193486 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold206 SAMTools SNP 193543 193543 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C0.095%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C145:99 scaffold206 SAMTools SNP 193884 193884 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold206 SAMTools SNP 195195 195195 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold206 SAMTools SNP 195237 195237 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold206 SAMTools SNP 196235 196235 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.57%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C218:99 scaffold206 SAMTools SNP 196271 196271 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.24%2C0.023%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C101:99 scaffold206 SAMTools SNP 196672 196672 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.0045%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold206 SAMTools SNP 196703 196703 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.41%2C0.0042%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C216:99 scaffold206 SAMTools SNP 196970 196970 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold206 SAMTools SNP 197084 197084 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold206 SAMTools SNP 197367 197367 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold206 SAMTools SNP 197388 197388 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.65%2C0.00059%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold206 SAMTools SNP 198307 198307 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C4%3BMQ%3D47%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold206 SAMTools SNP 198311 198311 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D43%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C221:96 scaffold206 SAMTools SNP 214742 214742 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold206 SAMTools SNP 217316 217316 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold206 SAMTools SNP 217336 217336 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold206 SAMTools SNP 217501 217501 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold206 SAMTools SNP 217532 217532 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold206 SAMTools SNP 217937 217937 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold206 SAMTools SNP 217955 217955 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold206 SAMTools SNP 218275 218275 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold206 SAMTools SNP 218416 218416 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold206 SAMTools SNP 218636 218636 41.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold206 SAMTools SNP 221725 221725 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold206 SAMTools SNP 221785 221785 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold206 SAMTools SNP 222120 222120 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold206 SAMTools SNP 222617 222617 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold206 SAMTools SNP 230915 230915 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 20457 20457 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 20475 20475 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 40872 40872 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold208 SAMTools SNP 40948 40948 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold208 SAMTools SNP 44797 44797 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C75%2C0:99 scaffold208 SAMTools SNP 51293 51293 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 51327 51327 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 60333 60333 19.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold208 SAMTools SNP 63084 63084 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold208 SAMTools SNP 63197 63197 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold208 SAMTools SNP 63585 63585 68.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold208 SAMTools SNP 63936 63936 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold208 SAMTools SNP 63951 63951 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold208 SAMTools SNP 64008 64008 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold208 SAMTools SNP 66167 66167 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold208 SAMTools SNP 66206 66206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold208 SAMTools SNP 66253 66253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold208 SAMTools SNP 66915 66915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold208 SAMTools SNP 67452 67452 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold208 SAMTools SNP 67859 67859 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold208 SAMTools SNP 67927 67927 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold208 SAMTools SNP 67951 67951 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold208 SAMTools SNP 68011 68011 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold208 SAMTools SNP 68351 68351 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C129%2C0:99 scaffold208 SAMTools SNP 68408 68408 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold208 SAMTools SNP 69637 69637 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C15:18 scaffold208 SAMTools SNP 69709 69709 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C50:53 scaffold208 SAMTools SNP 69795 69795 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C71%2C145%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 70089 70089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold208 SAMTools SNP 70662 70662 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold208 SAMTools SNP 71273 71273 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold208 SAMTools SNP 72984 72984 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold208 SAMTools SNP 72994 72994 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold208 SAMTools SNP 87703 87703 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold208 SAMTools SNP 88119 88119 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 88127 88127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 97686 97686 42.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold208 SAMTools SNP 97846 97846 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold208 SAMTools SNP 98004 98004 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold208 SAMTools SNP 98175 98175 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold208 SAMTools SNP 98227 98227 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 99296 99296 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold208 SAMTools SNP 99444 99444 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.13%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold208 SAMTools SNP 102429 102429 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 102772 102772 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold208 SAMTools SNP 105162 105162 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C231%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 105433 105433 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C255%2C0:99 scaffold208 SAMTools SNP 112297 112297 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C0%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D0.0041%2C1%2C0.008%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold208 SAMTools SNP 112298 112298 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C12%2C0%3BMQ%3D49%3BFQ%3D39%3BPV4%3D0.0046%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold208 SAMTools SNP 112908 112908 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 113141 113141 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold208 SAMTools SNP 115181 115181 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C21%2C0%3BMQ%3D38%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C237:99 scaffold208 SAMTools SNP 121557 121557 35.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold208 SAMTools SNP 122046 122046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 132612 132612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1169%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C487%2C236%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.33%2C1%2C0.47%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 134940 134940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 134994 134994 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 135081 135081 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold208 SAMTools SNP 135084 135084 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold208 SAMTools SNP 136365 136365 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold208 SAMTools SNP 136366 136366 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C59:43 scaffold208 SAMTools SNP 139090 139090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold208 SAMTools SNP 142937 142937 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold208 SAMTools SNP 143199 143199 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold208 SAMTools SNP 147186 147186 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 151387 151387 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.55%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold208 SAMTools SNP 155788 155788 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold208 SAMTools SNP 155790 155790 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold208 SAMTools SNP 168524 168524 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold208 SAMTools SNP 168555 168555 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold208 SAMTools SNP 168557 168557 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold208 SAMTools SNP 168939 168939 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold208 SAMTools SNP 179407 179407 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold208 SAMTools SNP 210928 210928 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 211072 211072 46.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold208 SAMTools SNP 211599 211599 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold208 SAMTools SNP 217031 217031 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold208 SAMTools SNP 217802 217802 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold208 SAMTools SNP 217844 217844 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 220174 220174 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D29%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C45%2C0:87 scaffold208 SAMTools SNP 220184 220184 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C1%2C1%3BMQ%3D35%3BFQ%3D13.2%3BPV4%3D0.28%2C0.45%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C169:42 scaffold208 SAMTools SNP 220379 220379 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D35%3BFQ%3D23%3BPV4%3D0.045%2C0.00084%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C100:53 scaffold208 SAMTools SNP 222300 222300 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C126:31 scaffold208 SAMTools SNP 222322 222322 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold208 SAMTools SNP 222388 222388 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.17%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C32:35 scaffold208 SAMTools SNP 229563 229563 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold208 SAMTools SNP 230528 230528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold208 SAMTools SNP 232649 232649 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold208 SAMTools SNP 232658 232658 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold208 SAMTools SNP 233302 233302 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold208 SAMTools SNP 233353 233353 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C0.067%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold208 SAMTools SNP 233362 233362 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.3%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold208 SAMTools SNP 233472 233472 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C16%2C22%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold208 SAMTools SNP 238187 238187 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold208 SAMTools SNP 238242 238242 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold208 SAMTools SNP 238314 238314 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold208 SAMTools SNP 239561 239561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold208 SAMTools SNP 240852 240852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 246170 246170 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D38%3BFQ%3D33.9%3BPV4%3D1%2C0.24%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C61:64 scaffold208 SAMTools SNP 248177 248177 84.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C18%2C0:33 scaffold208 SAMTools SNP 248226 248226 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D32%3BFQ%3D4.6%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C42:28 scaffold208 SAMTools SNP 249749 249749 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold208 SAMTools SNP 249834 249834 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold208 SAMTools SNP 250115 250115 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold208 SAMTools SNP 250592 250592 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold208 SAMTools SNP 250799 250799 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 5192 5192 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold209 SAMTools SNP 6603 6603 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold209 SAMTools SNP 6621 6621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold209 SAMTools SNP 6852 6852 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.52%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold209 SAMTools SNP 6873 6873 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold209 SAMTools SNP 6944 6944 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold209 SAMTools SNP 7005 7005 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.089%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold209 SAMTools SNP 7453 7453 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold209 SAMTools SNP 8178 8178 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C214:73 scaffold209 SAMTools SNP 8223 8223 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C246:99 scaffold209 SAMTools SNP 8778 8778 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C3e-06%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold209 SAMTools SNP 8779 8779 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C0.12%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold209 SAMTools SNP 8842 8842 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold209 SAMTools SNP 12977 12977 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 12983 12983 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 13090 13090 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 13139 13139 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.033%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C174:99 scaffold209 SAMTools SNP 23159 23159 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold209 SAMTools SNP 80090 80090 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold209 SAMTools SNP 82829 82829 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold209 SAMTools SNP 83137 83137 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold209 SAMTools SNP 83182 83182 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold209 SAMTools SNP 85750 85750 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold209 SAMTools SNP 85776 85776 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold209 SAMTools SNP 85798 85798 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 87248 87248 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold209 SAMTools SNP 87329 87329 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold209 SAMTools SNP 87341 87341 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C110:89 scaffold209 SAMTools SNP 87649 87649 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold209 SAMTools SNP 88074 88074 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 89005 89005 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold209 SAMTools SNP 89044 89044 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold209 SAMTools SNP 89380 89380 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 90261 90261 55.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold209 SAMTools SNP 90306 90306 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 91099 91099 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 91355 91355 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold209 SAMTools SNP 91400 91400 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold209 SAMTools SNP 91513 91513 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.25%2C1.8e-05%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C174:99 scaffold209 SAMTools SNP 91523 91523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold209 SAMTools SNP 91576 91576 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold209 SAMTools SNP 91595 91595 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold209 SAMTools SNP 92063 92063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold209 SAMTools SNP 92114 92114 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold209 SAMTools SNP 92400 92400 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold209 SAMTools SNP 93040 93040 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold209 SAMTools SNP 93060 93060 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold209 SAMTools SNP 94244 94244 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.49%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold209 SAMTools SNP 94256 94256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold209 SAMTools SNP 94329 94329 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.022%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold209 SAMTools SNP 94592 94592 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 94660 94660 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold209 SAMTools SNP 95063 95063 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.34%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold209 SAMTools SNP 95072 95072 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold209 SAMTools SNP 95092 95092 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 95237 95237 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold209 SAMTools SNP 95333 95333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 95549 95549 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold209 SAMTools SNP 95734 95734 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold209 SAMTools SNP 96000 96000 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold209 SAMTools SNP 96066 96066 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold209 SAMTools SNP 96215 96215 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 96255 96255 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold209 SAMTools SNP 96409 96409 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C17%2C5%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.064%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C172:99 scaffold209 SAMTools SNP 96511 96511 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C19%3BMQ%3D50%3BFQ%3D164%3BPV4%3D9.5e-05%2C1.5e-13%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C224:99 scaffold209 SAMTools SNP 96795 96795 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold209 SAMTools SNP 96960 96960 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72.6%3BPV4%3D0.1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C100:99 scaffold209 SAMTools SNP 97140 97140 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold209 SAMTools SNP 97260 97260 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold209 SAMTools SNP 97390 97390 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.61%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold209 SAMTools SNP 98433 98433 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C26:29 scaffold209 SAMTools SNP 98658 98658 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold209 SAMTools SNP 99543 99543 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C183:99 scaffold209 SAMTools SNP 99772 99772 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold209 SAMTools SNP 99787 99787 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold209 SAMTools SNP 100114 100114 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold209 SAMTools SNP 100123 100123 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold209 SAMTools SNP 100288 100288 9.51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C213:48 scaffold209 SAMTools SNP 100924 100924 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold209 SAMTools SNP 100990 100990 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C8%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0044%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold209 SAMTools SNP 101033 101033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 102508 102508 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.4%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C192:99 scaffold209 SAMTools SNP 103008 103008 212 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C10%2C234%2C0%2C228:99 scaffold209 SAMTools SNP 103026 103026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold209 SAMTools SNP 103176 103176 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D39.5%3BPV4%3D0.46%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C76:69 scaffold209 SAMTools SNP 103241 103241 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold209 SAMTools SNP 103658 103658 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold209 SAMTools SNP 103775 103775 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold209 SAMTools SNP 103929 103929 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold209 SAMTools SNP 104470 104470 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold209 SAMTools SNP 107366 107366 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C24%2C0:45 scaffold209 SAMTools SNP 107810 107810 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold209 SAMTools SNP 109300 109300 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 109303 109303 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 109354 109354 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold209 SAMTools SNP 109369 109369 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold209 SAMTools SNP 109570 109570 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold209 SAMTools SNP 109585 109585 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.021%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold209 SAMTools SNP 109723 109723 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold209 SAMTools SNP 114732 114732 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.088%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C2%2C0:5 scaffold209 SAMTools SNP 123875 123875 215 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C2%2C8%3BMQ%3D49%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold209 SAMTools SNP 123905 123905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C2%2C15%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.19%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold209 SAMTools SNP 124814 124814 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold209 SAMTools SNP 124832 124832 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold209 SAMTools SNP 124904 124904 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold209 SAMTools SNP 125847 125847 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold209 SAMTools SNP 126904 126904 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.54%2C0.043%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold209 SAMTools SNP 127012 127012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold209 SAMTools SNP 127434 127434 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 127690 127690 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold209 SAMTools SNP 128627 128627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C64%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold209 SAMTools SNP 130144 130144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold209 SAMTools SNP 130618 130618 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold209 SAMTools SNP 133633 133633 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C11%2C44%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C2.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold209 SAMTools SNP 134474 134474 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.019%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 136211 136211 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold209 SAMTools SNP 138451 138451 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.089%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold209 SAMTools SNP 138784 138784 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold209 SAMTools SNP 139211 139211 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C4%2C9%3BMQ%3D45%3BFQ%3D110%3BPV4%3D0.47%2C1%2C0.0095%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold209 SAMTools SNP 139247 139247 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C8%2C8%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.18%2C1%2C0.16%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 139624 139624 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C6%3BMQ%3D44%3BFQ%3D115%3BPV4%3D0.11%2C1%2C0.037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold209 SAMTools SNP 139668 139668 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D44%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C165%2C105:99 scaffold209 SAMTools SNP 139674 139674 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C0%3BMQ%3D49%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold209 SAMTools SNP 145485 145485 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold209 SAMTools SNP 145516 145516 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold209 SAMTools SNP 145540 145540 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold209 SAMTools SNP 145979 145979 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C213:99 scaffold209 SAMTools SNP 146005 146005 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold209 SAMTools SNP 146967 146967 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C27%2C0:51 scaffold209 SAMTools SNP 147437 147437 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold209 SAMTools SNP 148141 148141 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold209 SAMTools SNP 148917 148917 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 149659 149659 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold209 SAMTools SNP 149727 149727 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold209 SAMTools SNP 149783 149783 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold209 SAMTools SNP 150392 150392 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold209 SAMTools SNP 150452 150452 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.037%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold209 SAMTools SNP 150506 150506 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C252:99 scaffold209 SAMTools SNP 150702 150702 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.014%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold209 SAMTools SNP 150815 150815 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold209 SAMTools SNP 151900 151900 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 158294 158294 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold209 SAMTools SNP 158468 158468 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D7.75%3BPV4%3D0.12%2C3.7e-15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C52:34 scaffold209 SAMTools SNP 158825 158825 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold209 SAMTools SNP 158901 158901 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold209 SAMTools SNP 158945 158945 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold209 SAMTools SNP 158976 158976 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.036%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold209 SAMTools SNP 170907 170907 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D34%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold209 SAMTools SNP 171377 171377 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C1%2C20%2C4%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.35%2C1.6e-11%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C22:25 scaffold209 SAMTools SNP 174458 174458 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 175270 175270 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold209 SAMTools SNP 175598 175598 88.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D0.3%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C13:16 scaffold209 SAMTools SNP 178617 178617 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D46%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold209 SAMTools SNP 194954 194954 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D19%3BFQ%3D-58%3BPV4%3D1%2C0.4%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C31%2C0:59 scaffold209 SAMTools SNP 195711 195711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C1%3BMQ%3D35%3BFQ%3D-126%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold209 SAMTools SNP 195959 195959 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.042%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold209 SAMTools SNP 196154 196154 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.22%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C232:99 scaffold209 SAMTools SNP 198077 198077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold209 SAMTools SNP 198122 198122 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold209 SAMTools SNP 198194 198194 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold209 SAMTools SNP 198471 198471 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 198507 198507 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold209 SAMTools SNP 198577 198577 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold209 SAMTools SNP 198591 198591 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold209 SAMTools SNP 198979 198979 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C130:37 scaffold209 SAMTools SNP 199093 199093 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold209 SAMTools SNP 199291 199291 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold209 SAMTools SNP 199320 199320 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold209 SAMTools SNP 199347 199347 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold209 SAMTools SNP 199960 199960 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold209 SAMTools SNP 200052 200052 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C18%2C0:33 scaffold209 SAMTools SNP 200073 200073 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.43%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold209 SAMTools SNP 202721 202721 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C29%2C49%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 202745 202745 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C29%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 202760 202760 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 202772 202772 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0027%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold209 SAMTools SNP 202839 202839 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold209 SAMTools SNP 203054 203054 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold209 SAMTools SNP 203594 203594 65 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold209 SAMTools SNP 213495 213495 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold209 SAMTools SNP 214071 214071 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold209 SAMTools SNP 216496 216496 3.55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold209 SAMTools SNP 251740 251740 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C16:19 scaffold209 SAMTools SNP 299319 299319 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold209 SAMTools SNP 299326 299326 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold209 SAMTools SNP 318574 318574 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold210 SAMTools SNP 3199 3199 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C3%2C65%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 4825 4825 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 4831 4831 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold210 SAMTools SNP 4917 4917 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold210 SAMTools SNP 10320 10320 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold210 SAMTools SNP 10842 10842 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold210 SAMTools SNP 10845 10845 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold210 SAMTools SNP 11042 11042 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold210 SAMTools SNP 11421 11421 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C53%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D2e-05%2C1%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold210 SAMTools SNP 11684 11684 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold210 SAMTools SNP 12005 12005 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold210 SAMTools SNP 12014 12014 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.7e-08%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C107:46 scaffold210 SAMTools SNP 12467 12467 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold210 SAMTools SNP 12509 12509 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C8.7e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold210 SAMTools SNP 12515 12515 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1.9e-38%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C205:99 scaffold210 SAMTools SNP 12665 12665 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C4%2C8%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C2.1e-35%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold210 SAMTools SNP 13256 13256 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C44%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold210 SAMTools SNP 13277 13277 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C15%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold210 SAMTools SNP 13594 13594 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold210 SAMTools SNP 13607 13607 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold210 SAMTools SNP 13669 13669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold210 SAMTools SNP 13996 13996 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C53%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold210 SAMTools SNP 14362 14362 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C50%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-06%2C1.5e-06%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 14365 14365 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C8%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-07%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 14425 14425 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold210 SAMTools SNP 15385 15385 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.016%2C0.28%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold210 SAMTools SNP 15424 15424 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold210 SAMTools SNP 15975 15975 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold210 SAMTools SNP 15981 15981 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold210 SAMTools SNP 17834 17834 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold210 SAMTools SNP 19175 19175 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 19400 19400 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold210 SAMTools SNP 19439 19439 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold210 SAMTools SNP 20726 20726 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold210 SAMTools SNP 31250 31250 22.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold210 SAMTools SNP 32232 32232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 32809 32809 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C64:57 scaffold210 SAMTools SNP 33184 33184 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C152:99 scaffold210 SAMTools SNP 33810 33810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold210 SAMTools SNP 43591 43591 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D285%2C9%2C161%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.79%2C3.8e-316%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold210 SAMTools SNP 43619 43619 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C0%2C11%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.32%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold210 SAMTools SNP 43655 43655 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C287%2C0%2C160%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold210 SAMTools SNP 44507 44507 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold210 SAMTools SNP 47539 47539 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold210 SAMTools SNP 47561 47561 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold210 SAMTools SNP 47565 47565 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold210 SAMTools SNP 47946 47946 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 48106 48106 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold210 SAMTools SNP 48148 48148 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.072%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold210 SAMTools SNP 60188 60188 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold210 SAMTools SNP 60327 60327 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold210 SAMTools SNP 62961 62961 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold210 SAMTools SNP 63002 63002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold210 SAMTools SNP 63888 63888 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold210 SAMTools SNP 63912 63912 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold210 SAMTools SNP 63964 63964 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold210 SAMTools SNP 65234 65234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold210 SAMTools SNP 65319 65319 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-06%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 68284 68284 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 68313 68313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C1%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold210 SAMTools SNP 69298 69298 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold210 SAMTools SNP 69326 69326 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold210 SAMTools SNP 69349 69349 93.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C18%2C0:33 scaffold210 SAMTools SNP 72291 72291 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold210 SAMTools SNP 72953 72953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 73886 73886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C35%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold210 SAMTools SNP 82341 82341 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D791%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C96%2C0:99 scaffold210 SAMTools SNP 83549 83549 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold210 SAMTools SNP 83579 83579 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C65%2C43%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 83852 83852 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C9%2C112%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 84173 84173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C64%2C101%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-07%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 84233 84233 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D749%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C109%2C128%2C70%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.22%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold210 SAMTools SNP 84951 84951 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C143%2C11%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 85309 85309 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C83%2C0%2C27%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0021%2C1%2C1%2C7.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold210 SAMTools SNP 85413 85413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 85416 85416 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C24%2C9%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.52%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold210 SAMTools SNP 86410 86410 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 86677 86677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 87006 87006 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C60%2C4%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 87073 87073 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold210 SAMTools SNP 87115 87115 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold210 SAMTools SNP 153522 153522 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold210 SAMTools SNP 153525 153525 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 154233 154233 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold210 SAMTools SNP 154528 154528 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold210 SAMTools SNP 154954 154954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold210 SAMTools SNP 154978 154978 196 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C47%2C20%2C212%2C0%2C209:51 scaffold210 SAMTools SNP 165812 165812 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.12%2C3.6e-07%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C217:99 scaffold210 SAMTools SNP 165905 165905 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold210 SAMTools SNP 166023 166023 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold210 SAMTools SNP 168619 168619 26.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold210 SAMTools SNP 168743 168743 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold210 SAMTools SNP 169488 169488 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold210 SAMTools SNP 170147 170147 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold210 SAMTools SNP 170562 170562 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold210 SAMTools SNP 171243 171243 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold210 SAMTools SNP 171354 171354 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold210 SAMTools SNP 174186 174186 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold210 SAMTools SNP 176742 176742 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C241:99 scaffold210 SAMTools SNP 176750 176750 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold210 SAMTools SNP 177424 177424 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold210 SAMTools SNP 177502 177502 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold210 SAMTools SNP 177516 177516 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold210 SAMTools SNP 177539 177539 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.027%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C223:41 scaffold210 SAMTools SNP 181470 181470 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold210 SAMTools SNP 181730 181730 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold210 SAMTools SNP 181764 181764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold210 SAMTools SNP 182780 182780 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.27%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C221:52 scaffold210 SAMTools SNP 183731 183731 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C83:79 scaffold210 SAMTools SNP 183770 183770 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 184670 184670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 184673 184673 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 184697 184697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold210 SAMTools SNP 184742 184742 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold210 SAMTools SNP 184748 184748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold210 SAMTools SNP 185240 185240 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold210 SAMTools SNP 185282 185282 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold210 SAMTools SNP 185847 185847 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold210 SAMTools SNP 185883 185883 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C187:99 scaffold210 SAMTools SNP 186298 186298 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold210 SAMTools SNP 187666 187666 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold210 SAMTools SNP 187672 187672 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold210 SAMTools SNP 187738 187738 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold210 SAMTools SNP 187774 187774 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0005%2C0.41%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold210 SAMTools SNP 190440 190440 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00077%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold210 SAMTools SNP 190985 190985 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold210 SAMTools SNP 191096 191096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 191598 191598 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 192518 192518 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 194094 194094 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold210 SAMTools SNP 194626 194626 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold210 SAMTools SNP 194644 194644 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold210 SAMTools SNP 194662 194662 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold210 SAMTools SNP 194680 194680 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold210 SAMTools SNP 195495 195495 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.088%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C196:99 scaffold210 SAMTools SNP 195561 195561 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold210 SAMTools SNP 195562 195562 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold210 SAMTools SNP 195571 195571 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.24%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold210 SAMTools SNP 195899 195899 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold210 SAMTools SNP 195978 195978 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C167:30 scaffold210 SAMTools SNP 202282 202282 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold210 SAMTools SNP 202588 202588 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 203081 203081 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold210 SAMTools SNP 203204 203204 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 203220 203220 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold210 SAMTools SNP 203763 203763 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 204223 204223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold210 SAMTools SNP 204278 204278 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C0.024%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C104:99 scaffold210 SAMTools SNP 204307 204307 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold210 SAMTools SNP 204310 204310 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.039%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C132:99 scaffold210 SAMTools SNP 205056 205056 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold210 SAMTools SNP 205059 205059 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.32%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold210 SAMTools SNP 205121 205121 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold210 SAMTools SNP 209766 209766 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold210 SAMTools SNP 218500 218500 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C10%2C10%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.34%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold210 SAMTools SNP 218517 218517 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C0%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.17%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold210 SAMTools SNP 219341 219341 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.032%2C8.7e-14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold210 SAMTools SNP 219704 219704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold210 SAMTools SNP 219710 219710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold210 SAMTools SNP 222118 222118 91.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold210 SAMTools SNP 229135 229135 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D73%3BPV4%3D5.7e-06%2C4.3e-18%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold210 SAMTools SNP 229193 229193 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold210 SAMTools SNP 230281 230281 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold210 SAMTools SNP 230298 230298 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00019%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold210 SAMTools SNP 230312 230312 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold210 SAMTools SNP 230345 230345 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 230942 230942 220 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C42%2C0:81 scaffold210 SAMTools SNP 249513 249513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold210 SAMTools SNP 253797 253797 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 258074 258074 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C15%2C0:27 scaffold210 SAMTools SNP 261775 261775 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold210 SAMTools SNP 322679 322679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold210 SAMTools SNP 322745 322745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold210 SAMTools SNP 324841 324841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold210 SAMTools SNP 324863 324863 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 324884 324884 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 324988 324988 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 326518 326518 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold210 SAMTools SNP 326628 326628 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold210 SAMTools SNP 327384 327384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold210 SAMTools SNP 328108 328108 55.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold210 SAMTools SNP 328378 328378 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C36%2C0:69 scaffold210 SAMTools SNP 332906 332906 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D0.33%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold210 SAMTools SNP 333271 333271 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold210 SAMTools SNP 333288 333288 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold210 SAMTools SNP 335899 335899 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C54%2C0:99 scaffold210 SAMTools SNP 335950 335950 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold210 SAMTools SNP 336361 336361 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.21%2C1.1e-19%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C123:53 scaffold210 SAMTools SNP 336711 336711 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold210 SAMTools SNP 337589 337589 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0011%2C4.4e-06%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold210 SAMTools SNP 338095 338095 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C75%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 339014 339014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C39%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 339685 339685 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C3%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 340032 340032 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold210 SAMTools SNP 340612 340612 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold210 SAMTools SNP 341026 341026 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C0%3BMQ%3D47%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold210 SAMTools SNP 348035 348035 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C5%2C15%3BMQ%3D50%3BFQ%3D138%3BPV4%3D2.2e-06%2C2.3e-09%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold210 SAMTools SNP 348640 348640 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C41%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 349572 349572 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold210 SAMTools SNP 353607 353607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 353633 353633 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold210 SAMTools SNP 357110 357110 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C99%2C0:99 scaffold210 SAMTools SNP 362260 362260 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 362431 362431 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C8%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 362460 362460 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold210 SAMTools SNP 362928 362928 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 365030 365030 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C9%2C144%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 365048 365048 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C13%2C125%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.17%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 365069 365069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold210 SAMTools SNP 365129 365129 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C289%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C255%2C0:99 scaffold210 SAMTools SNP 365165 365165 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold210 SAMTools SNP 365312 365312 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold210 SAMTools SNP 365547 365547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold210 SAMTools SNP 366022 366022 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.047%2C0.0022%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold210 SAMTools SNP 366464 366464 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C51%2C49%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 368907 368907 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C127%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 369565 369565 57.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold210 SAMTools SNP 371035 371035 13.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold210 SAMTools SNP 371140 371140 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold210 SAMTools SNP 372217 372217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 372246 372246 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.48%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold210 SAMTools SNP 372816 372816 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.073%2C0.48%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold210 SAMTools SNP 372967 372967 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C22%2C94%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 373306 373306 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C69%2C18%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 373345 373345 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 377629 377629 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C9%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.35%2C1.2e-14%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C216:89 scaffold210 SAMTools SNP 377932 377932 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C12%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.076%2C5.2e-09%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold210 SAMTools SNP 378038 378038 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C24%2C23%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.14%2C2.6e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold210 SAMTools SNP 378290 378290 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C10%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.29%2C5.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold210 SAMTools SNP 378354 378354 194 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C81%2C0:99 scaffold210 SAMTools SNP 379974 379974 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C42%2C0:76 scaffold210 SAMTools SNP 380016 380016 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C5%3BMQ%3D46%3BFQ%3D19.1%3BPV4%3D1%2C4.7e-06%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C166:49 scaffold210 SAMTools SNP 381042 381042 11.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C1%2C0:3 scaffold210 SAMTools SNP 383933 383933 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 390096 390096 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C172%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold210 SAMTools SNP 390271 390271 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 390344 390344 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.016%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C184:99 scaffold210 SAMTools SNP 390558 390558 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C57%2C0:99 scaffold210 SAMTools SNP 390694 390694 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C45%2C0:67 scaffold210 SAMTools SNP 391122 391122 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C7.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C153:99 scaffold210 SAMTools SNP 391635 391635 24.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold210 SAMTools SNP 393602 393602 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold210 SAMTools SNP 393665 393665 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 402321 402321 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 402323 402323 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 403256 403256 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold210 SAMTools SNP 403266 403266 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold210 SAMTools SNP 403823 403823 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C62:65 scaffold210 SAMTools SNP 403862 403862 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.09%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold210 SAMTools SNP 403871 403871 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold210 SAMTools SNP 404592 404592 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold210 SAMTools SNP 406854 406854 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold210 SAMTools SNP 407770 407770 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold210 SAMTools SNP 412011 412011 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 412044 412044 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 415924 415924 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 416343 416343 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold210 SAMTools SNP 416378 416378 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 416499 416499 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 416913 416913 60.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold210 SAMTools SNP 417596 417596 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold210 SAMTools SNP 422314 422314 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold210 SAMTools SNP 426317 426317 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold210 SAMTools SNP 433519 433519 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold210 SAMTools SNP 433672 433672 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold210 SAMTools SNP 433708 433708 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C231:70 scaffold210 SAMTools SNP 433874 433874 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold210 SAMTools SNP 434227 434227 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C4%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold210 SAMTools SNP 434751 434751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold210 SAMTools SNP 434788 434788 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold210 SAMTools SNP 434815 434815 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 11799 11799 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold211 SAMTools SNP 65947 65947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 66248 66248 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 66541 66541 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold211 SAMTools SNP 66611 66611 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold211 SAMTools SNP 67916 67916 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C1%2C113%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C3e-40;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 67970 67970 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C12%2C1%2C70%3BMQ%3D50%3BFQ%3D168%3BPV4%3D2.1e-48%2C0.37%2C1%2C1.5e-64;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold211 SAMTools SNP 72241 72241 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C158%2C21%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C6.5e-48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 72250 72250 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D20%2C4%2C36%2C159%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D3.6e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold211 SAMTools SNP 72265 72265 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D44%2C179%2C14%2C15%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0016%2C1%2C1%2C7.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold211 SAMTools SNP 73226 73226 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C1%2C14%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.43%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold211 SAMTools SNP 73265 73265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 74333 74333 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 74342 74342 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 74525 74525 36.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold211 SAMTools SNP 74585 74585 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C128%2C5%2C25%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold211 SAMTools SNP 74587 74587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C128%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 74904 74904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C132%2C16%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 77986 77986 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C45%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 78691 78691 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C0%2C13%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold211 SAMTools SNP 80017 80017 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold211 SAMTools SNP 107680 107680 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold211 SAMTools SNP 108089 108089 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 108090 108090 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 114991 114991 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold211 SAMTools SNP 153798 153798 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C75%2C0:99 scaffold211 SAMTools SNP 153918 153918 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 154263 154263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 157164 157164 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 157185 157185 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold211 SAMTools SNP 157209 157209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 157269 157269 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 157314 157314 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold211 SAMTools SNP 157651 157651 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.052%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C233:75 scaffold211 SAMTools SNP 157723 157723 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C6%2C3%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.68%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold211 SAMTools SNP 160383 160383 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold211 SAMTools SNP 160503 160503 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold211 SAMTools SNP 160962 160962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C48%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 161028 161028 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C40%2C0%2C19%3BMQ%3D50%3BFQ%3D114%3BPV4%3D8.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold211 SAMTools SNP 161871 161871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C14%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold211 SAMTools SNP 163915 163915 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C234:77 scaffold211 SAMTools SNP 163930 163930 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.095%2C0.38%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C177:99 scaffold211 SAMTools SNP 170568 170568 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold211 SAMTools SNP 171034 171034 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold211 SAMTools SNP 172310 172310 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C48%2C0:93 scaffold211 SAMTools SNP 172771 172771 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 173098 173098 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold211 SAMTools SNP 173137 173137 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold211 SAMTools SNP 173624 173624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 173714 173714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 173726 173726 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C54%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 174030 174030 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C8%3BMQ%3D49%3BFQ%3D167%3BPV4%3D0.58%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold211 SAMTools SNP 174292 174292 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 174295 174295 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 174304 174304 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 174683 174683 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold211 SAMTools SNP 174749 174749 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C6.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold211 SAMTools SNP 175403 175403 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold211 SAMTools SNP 175439 175439 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C42%2C0:81 scaffold211 SAMTools SNP 175712 175712 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D21%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C72%2C0:99 scaffold211 SAMTools SNP 176369 176369 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C202:99 scaffold211 SAMTools SNP 176405 176405 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.00058%2C0.044%2C1%2C3.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C169:99 scaffold211 SAMTools SNP 176432 176432 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C145:99 scaffold211 SAMTools SNP 176438 176438 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold211 SAMTools SNP 177114 177114 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 177184 177184 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 177625 177625 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold211 SAMTools SNP 177643 177643 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold211 SAMTools SNP 177655 177655 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C234:70 scaffold211 SAMTools SNP 178858 178858 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold211 SAMTools SNP 178867 178867 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.021%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C213:99 scaffold211 SAMTools SNP 178939 178939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold211 SAMTools SNP 178951 178951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 179229 179229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold211 SAMTools SNP 179250 179250 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold211 SAMTools SNP 179706 179706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 179850 179850 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold211 SAMTools SNP 179853 179853 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold211 SAMTools SNP 181417 181417 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D0.33%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C41:41 scaffold211 SAMTools SNP 181451 181451 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C38:41 scaffold211 SAMTools SNP 182003 182003 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold211 SAMTools SNP 182009 182009 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0027%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C204:71 scaffold211 SAMTools SNP 182084 182084 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C169:99 scaffold211 SAMTools SNP 182794 182794 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold211 SAMTools SNP 182896 182896 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 182914 182914 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold211 SAMTools SNP 184357 184357 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold211 SAMTools SNP 184882 184882 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.44%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C215:99 scaffold211 SAMTools SNP 184932 184932 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C165:99 scaffold211 SAMTools SNP 185203 185203 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 185243 185243 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold211 SAMTools SNP 186168 186168 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold211 SAMTools SNP 186540 186540 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0045%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold211 SAMTools SNP 186557 186557 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.0019%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold211 SAMTools SNP 187461 187461 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold211 SAMTools SNP 188132 188132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C18%3BMQ%3D41%3BFQ%3D194%3BPV4%3D0.0015%2C0.00012%2C0.2%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold211 SAMTools SNP 190017 190017 18 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold211 SAMTools SNP 191791 191791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold211 SAMTools SNP 191872 191872 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C7%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.002%2C0.039%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold211 SAMTools SNP 192147 192147 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 192177 192177 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold211 SAMTools SNP 192192 192192 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold211 SAMTools SNP 192267 192267 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.03%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold211 SAMTools SNP 198396 198396 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold211 SAMTools SNP 199235 199235 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C155:99 scaffold211 SAMTools SNP 199256 199256 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C4%2C12%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.62%2C3.4e-07%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C239:99 scaffold211 SAMTools SNP 199313 199313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 199692 199692 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold211 SAMTools SNP 199716 199716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold211 SAMTools SNP 199758 199758 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C8%2C11%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.00035%2C3.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold211 SAMTools SNP 199926 199926 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 203470 203470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold211 SAMTools SNP 203498 203498 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold211 SAMTools SNP 205920 205920 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold211 SAMTools SNP 205956 205956 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold211 SAMTools SNP 231515 231515 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.16%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C148:99 scaffold211 SAMTools SNP 234475 234475 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C152:63 scaffold211 SAMTools SNP 252663 252663 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold211 SAMTools SNP 256970 256970 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold211 SAMTools SNP 267293 267293 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold211 SAMTools SNP 267298 267298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold211 SAMTools SNP 269692 269692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C49%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold211 SAMTools SNP 270965 270965 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 272466 272466 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D48%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold211 SAMTools SNP 272496 272496 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C58%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 274365 274365 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold211 SAMTools SNP 275273 275273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 281474 281474 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C88%2C0%2C46%3BMQ%3D47%3BFQ%3D122%3BPV4%3D1%2C5.3e-66%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold211 SAMTools SNP 311572 311572 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold211 SAMTools SNP 313186 313186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold211 SAMTools SNP 313566 313566 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C12%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold211 SAMTools SNP 313608 313608 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold211 SAMTools SNP 314040 314040 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C0%2C16%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.00053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold211 SAMTools SNP 317457 317457 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 319023 319023 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C0.00018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold211 SAMTools SNP 358275 358275 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 358554 358554 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 372891 372891 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0072%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.18%2C0.18%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C201:37 scaffold211 SAMTools SNP 382855 382855 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 385215 385215 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold211 SAMTools SNP 400113 400113 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold211 SAMTools SNP 400127 400127 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 404325 404325 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold211 SAMTools SNP 404331 404331 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold211 SAMTools SNP 417515 417515 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 417872 417872 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 420319 420319 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C229:99 scaffold211 SAMTools SNP 422276 422276 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 422285 422285 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C0.43%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold211 SAMTools SNP 422928 422928 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold211 SAMTools SNP 422953 422953 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold211 SAMTools SNP 423150 423150 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold211 SAMTools SNP 423602 423602 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold211 SAMTools SNP 425428 425428 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold211 SAMTools SNP 427438 427438 42.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold211 SAMTools SNP 427477 427477 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold211 SAMTools SNP 427916 427916 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.038%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C232:99 scaffold211 SAMTools SNP 427997 427997 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold211 SAMTools SNP 429218 429218 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.031%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold211 SAMTools SNP 429223 429223 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold211 SAMTools SNP 430878 430878 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.088%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C222:99 scaffold211 SAMTools SNP 431987 431987 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold211 SAMTools SNP 432722 432722 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 435922 435922 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C196:46 scaffold211 SAMTools SNP 436845 436845 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold211 SAMTools SNP 439332 439332 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 439379 439379 112 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C51%2C0%2C138%2C32%2C135:99 scaffold211 SAMTools SNP 439420 439420 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold211 SAMTools SNP 440549 440549 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold211 SAMTools SNP 441263 441263 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold211 SAMTools SNP 441290 441290 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 441321 441321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 445704 445704 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C165:28 scaffold211 SAMTools SNP 446262 446262 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 448952 448952 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.45%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold211 SAMTools SNP 449140 449140 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.38%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold211 SAMTools SNP 450472 450472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 479284 479284 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 479623 479623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 479752 479752 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold211 SAMTools SNP 480741 480741 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C24%2C0:45 scaffold211 SAMTools SNP 481378 481378 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C121:51 scaffold211 SAMTools SNP 481474 481474 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold211 SAMTools SNP 482581 482581 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C6.9e-15%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold211 SAMTools SNP 482589 482589 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C141:76 scaffold211 SAMTools SNP 482715 482715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold211 SAMTools SNP 482899 482899 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold211 SAMTools SNP 483787 483787 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C9.6e-10%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C63:66 scaffold211 SAMTools SNP 484171 484171 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D0.38%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C27%2C0:51 scaffold211 SAMTools SNP 484698 484698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C3%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold211 SAMTools SNP 486984 486984 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.084%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C73:76 scaffold211 SAMTools SNP 486993 486993 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C0%2C25%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.55%2C3.2e-11%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold211 SAMTools SNP 497435 497435 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold211 SAMTools SNP 498894 498894 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 499081 499081 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 508806 508806 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C72:43 scaffold211 SAMTools SNP 509833 509833 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold211 SAMTools SNP 509873 509873 56.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold211 SAMTools SNP 509925 509925 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 509967 509967 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 513721 513721 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold211 SAMTools SNP 513937 513937 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold211 SAMTools SNP 518261 518261 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold211 SAMTools SNP 518280 518280 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold211 SAMTools SNP 524190 524190 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 524243 524243 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold211 SAMTools SNP 526780 526780 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold211 SAMTools SNP 526852 526852 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold211 SAMTools SNP 527604 527604 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 528045 528045 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold211 SAMTools SNP 528163 528163 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold211 SAMTools SNP 528743 528743 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold211 SAMTools SNP 528756 528756 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold211 SAMTools SNP 529249 529249 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold211 SAMTools SNP 529255 529255 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 529430 529430 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 529448 529448 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 538578 538578 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 542500 542500 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold211 SAMTools SNP 542504 542504 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold211 SAMTools SNP 554949 554949 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2685%3BVDB%3D0.0025%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.00014%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C25:28 scaffold211 SAMTools SNP 559991 559991 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.31%2C0.43%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold211 SAMTools SNP 560012 560012 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C3%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold211 SAMTools SNP 560036 560036 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 561458 561458 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 561742 561742 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C18%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold211 SAMTools SNP 561938 561938 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold211 SAMTools SNP 562239 562239 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold211 SAMTools SNP 562241 562241 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.55%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold211 SAMTools SNP 562272 562272 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 564881 564881 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold211 SAMTools SNP 569440 569440 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold211 SAMTools SNP 572669 572669 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C27%2C0:51 scaffold211 SAMTools SNP 573107 573107 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold211 SAMTools SNP 573349 573349 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C35%2C4%3BMQ%3D45%3BFQ%3D128%3BPV4%3D1%2C0.23%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold211 SAMTools SNP 573622 573622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C17%2C12%3BMQ%3D38%3BFQ%3D136%3BPV4%3D1%2C0.37%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold211 SAMTools SNP 574488 574488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D46%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold211 SAMTools SNP 574509 574509 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.53%2C0.064%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold211 SAMTools SNP 576364 576364 9.51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C31%3BMQ%3D7%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C184%2C0:60 scaffold211 SAMTools SNP 576749 576749 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C49%2C7%2C14%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.26%2C0.44%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 578972 578972 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold211 SAMTools SNP 608984 608984 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold211 SAMTools SNP 609419 609419 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold211 SAMTools SNP 678511 678511 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 678527 678527 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 686227 686227 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold211 SAMTools SNP 686685 686685 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold211 SAMTools SNP 687500 687500 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 687515 687515 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 690975 690975 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 691023 691023 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 713934 713934 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 714298 714298 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold211 SAMTools SNP 715314 715314 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 717730 717730 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 717842 717842 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold211 SAMTools SNP 718052 718052 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C48%2C0:93 scaffold211 SAMTools SNP 718109 718109 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.29%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold211 SAMTools SNP 718515 718515 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C9%2C17%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.39%2C9.3e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C187:90 scaffold211 SAMTools SNP 718886 718886 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C20%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C116:99 scaffold211 SAMTools SNP 720764 720764 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 723460 723460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 725163 725163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D242%2C18%2C138%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 725205 725205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C27%3BMQ%3D50%3BFQ%3D-220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold211 SAMTools SNP 725298 725298 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C148%2C50%2C66%3BMQ%3D50%3BFQ%3D199%3BPV4%3D5.7e-09%2C1.5e-129%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold211 SAMTools SNP 725328 725328 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C68%2C65%2C89%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0035%2C1e-152%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold211 SAMTools SNP 725462 725462 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C67%2C17%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.5%2C8.4e-112%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold211 SAMTools SNP 727749 727749 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold211 SAMTools SNP 727777 727777 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold211 SAMTools SNP 736818 736818 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold211 SAMTools SNP 736836 736836 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C18%2C0:33 scaffold211 SAMTools SNP 736845 736845 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 744870 744870 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 745213 745213 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C217:72 scaffold211 SAMTools SNP 745889 745889 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold211 SAMTools SNP 745934 745934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold211 SAMTools SNP 748352 748352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold211 SAMTools SNP 748379 748379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold211 SAMTools SNP 749279 749279 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold211 SAMTools SNP 749718 749718 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 749726 749726 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold211 SAMTools SNP 749742 749742 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C0.37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold211 SAMTools SNP 750093 750093 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold211 SAMTools SNP 750132 750132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold211 SAMTools SNP 750138 750138 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.12%2C0.13%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold211 SAMTools SNP 751089 751089 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold211 SAMTools SNP 751508 751508 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 751949 751949 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 752814 752814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold211 SAMTools SNP 752832 752832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold211 SAMTools SNP 752858 752858 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold211 SAMTools SNP 753260 753260 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold211 SAMTools SNP 753300 753300 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.42%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold211 SAMTools SNP 753364 753364 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 753388 753388 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.26%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold211 SAMTools SNP 753652 753652 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 753705 753705 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.39%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold211 SAMTools SNP 753744 753744 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 753786 753786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 754342 754342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold211 SAMTools SNP 754630 754630 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold211 SAMTools SNP 754651 754651 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold211 SAMTools SNP 754717 754717 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C45%2C0:87 scaffold211 SAMTools SNP 755172 755172 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold211 SAMTools SNP 755196 755196 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 756016 756016 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C4.5e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C26:29 scaffold211 SAMTools SNP 756029 756029 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C20:23 scaffold211 SAMTools SNP 756189 756189 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold211 SAMTools SNP 766887 766887 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 771764 771764 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold211 SAMTools SNP 772369 772369 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.55%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold211 SAMTools SNP 772432 772432 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.28%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold211 SAMTools SNP 772435 772435 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.034%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold211 SAMTools SNP 772655 772655 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold211 SAMTools SNP 772703 772703 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.4%2C7.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold211 SAMTools SNP 773046 773046 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold211 SAMTools SNP 773275 773275 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold211 SAMTools SNP 773277 773277 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold211 SAMTools SNP 773353 773353 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold211 SAMTools SNP 773364 773364 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.09%2C0.16%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold211 SAMTools SNP 773572 773572 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold211 SAMTools SNP 773788 773788 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C36%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.2%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C174:99 scaffold211 SAMTools SNP 773822 773822 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.097%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold211 SAMTools SNP 774079 774079 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 774564 774564 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 774912 774912 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold211 SAMTools SNP 775006 775006 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.11%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold211 SAMTools SNP 775176 775176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold211 SAMTools SNP 775237 775237 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.31%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold211 SAMTools SNP 775260 775260 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.088%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold211 SAMTools SNP 775272 775272 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.042%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold211 SAMTools SNP 776372 776372 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold211 SAMTools SNP 776383 776383 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold211 SAMTools SNP 776664 776664 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold211 SAMTools SNP 777372 777372 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold211 SAMTools SNP 777890 777890 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.27%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold211 SAMTools SNP 778105 778105 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold211 SAMTools SNP 780208 780208 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold211 SAMTools SNP 851056 851056 34.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold211 SAMTools SNP 864016 864016 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 865609 865609 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D46%3BFQ%3D-6.18%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C22:25 scaffold211 SAMTools SNP 866821 866821 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 867036 867036 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.29%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C79:48 scaffold211 SAMTools SNP 867727 867727 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold211 SAMTools SNP 939615 939615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C37%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1.4e-51%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 941907 941907 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold211 SAMTools SNP 942226 942226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 942815 942815 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold211 SAMTools SNP 942859 942859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C41%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 943047 943047 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C28%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold211 SAMTools SNP 943926 943926 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold211 SAMTools SNP 944753 944753 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold211 SAMTools SNP 945146 945146 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 945705 945705 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 945805 945805 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C14%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 945991 945991 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C0.25%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 946620 946620 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C9%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00079%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold211 SAMTools SNP 947109 947109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C40%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 947130 947130 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C47%2C4%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.14%2C0.22%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold211 SAMTools SNP 947217 947217 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C66%2C8%2C17%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.053%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold211 SAMTools SNP 947223 947223 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C63%2C20%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 947479 947479 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C32%2C0%2C46%3BMQ%3D50%3BFQ%3D81%3BPV4%3D7.8e-17%2C1.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold211 SAMTools SNP 947620 947620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C99%2C18%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 947994 947994 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.056%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold211 SAMTools SNP 948640 948640 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C65%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 948673 948673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 949676 949676 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C54%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold211 SAMTools SNP 949715 949715 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C42%2C2%2C11%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.6%2C0.013%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold211 SAMTools SNP 950124 950124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C14%2C57%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 950598 950598 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C34%2C5%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.098%2C1%2C1%2C4.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold211 SAMTools SNP 951055 951055 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.13%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C174:46 scaffold211 SAMTools SNP 951723 951723 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 952601 952601 43.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0200%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C15:18 scaffold211 SAMTools SNP 955227 955227 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold211 SAMTools SNP 955230 955230 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold211 SAMTools SNP 955252 955252 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold211 SAMTools SNP 955269 955269 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold211 SAMTools SNP 956895 956895 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 960780 960780 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold211 SAMTools SNP 960794 960794 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold211 SAMTools SNP 960795 960795 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold211 SAMTools SNP 960945 960945 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 960978 960978 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 962381 962381 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 962815 962815 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 962957 962957 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 963497 963497 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 964477 964477 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 964525 964525 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold211 SAMTools SNP 965035 965035 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold211 SAMTools SNP 965950 965950 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold211 SAMTools SNP 966017 966017 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 967257 967257 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C77:80 scaffold211 SAMTools SNP 967296 967296 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold211 SAMTools SNP 967299 967299 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold211 SAMTools SNP 968766 968766 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 968797 968797 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold211 SAMTools SNP 969101 969101 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 969108 969108 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 979836 979836 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 979971 979971 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold211 SAMTools SNP 980091 980091 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold211 SAMTools SNP 980570 980570 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold211 SAMTools SNP 981028 981028 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold211 SAMTools SNP 981771 981771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 986200 986200 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold211 SAMTools SNP 988204 988204 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold211 SAMTools SNP 989251 989251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold211 SAMTools SNP 989382 989382 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C33%2C0:62 scaffold211 SAMTools SNP 989393 989393 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C9.4e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold211 SAMTools SNP 989783 989783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold211 SAMTools SNP 997785 997785 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.69%2C5.6e-17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold211 SAMTools SNP 997986 997986 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 999007 999007 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1004775 1004775 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold211 SAMTools SNP 1013754 1013754 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1014120 1014120 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.033%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold211 SAMTools SNP 1015858 1015858 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1025820 1025820 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold211 SAMTools SNP 1051159 1051159 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D2%2C3%2C24%2C43%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold211 SAMTools SNP 1052357 1052357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C48%2C56%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold211 SAMTools SNP 1052446 1052446 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C22%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold211 SAMTools SNP 1052989 1052989 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C3.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1053534 1053534 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold211 SAMTools SNP 1053541 1053541 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold211 SAMTools SNP 1063639 1063639 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C60%2C0:92 scaffold211 SAMTools SNP 1063778 1063778 4.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold211 SAMTools SNP 1063789 1063789 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C164:71 scaffold211 SAMTools SNP 1063883 1063883 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold211 SAMTools SNP 1064525 1064525 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C84%2C0:99 scaffold211 SAMTools SNP 1065239 1065239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C20%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold211 SAMTools SNP 1066849 1066849 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold211 SAMTools SNP 1068564 1068564 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 1077347 1077347 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C96%2C84%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1083519 1083519 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C107%2C62%2C12%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0012%2C0.016%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold211 SAMTools SNP 1083522 1083522 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C107%2C54%2C12%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0056%2C0.012%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold211 SAMTools SNP 1086980 1086980 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.48%2C2e-15%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C192:99 scaffold211 SAMTools SNP 1088837 1088837 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C247:28 scaffold211 SAMTools SNP 1091593 1091593 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C4%2C0:7 scaffold211 SAMTools SNP 1094478 1094478 98.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C21%2C0:39 scaffold211 SAMTools SNP 1094529 1094529 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold211 SAMTools SNP 1094930 1094930 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold211 SAMTools SNP 1098936 1098936 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold211 SAMTools SNP 1099930 1099930 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold211 SAMTools SNP 1101402 1101402 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C1%2C1%2C5.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold211 SAMTools SNP 1101847 1101847 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold211 SAMTools SNP 1102296 1102296 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C36:35 scaffold211 SAMTools SNP 1104092 1104092 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold211 SAMTools SNP 1104128 1104128 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1104283 1104283 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1104500 1104500 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold211 SAMTools SNP 1106167 1106167 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1107303 1107303 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold211 SAMTools SNP 1109146 1109146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold211 SAMTools SNP 1109272 1109272 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C7%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0034%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold211 SAMTools SNP 1109591 1109591 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.27%2C0.00081%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold211 SAMTools SNP 1109926 1109926 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold211 SAMTools SNP 1110656 1110656 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold211 SAMTools SNP 1111712 1111712 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold211 SAMTools SNP 1111745 1111745 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 1112183 1112183 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold211 SAMTools SNP 1112237 1112237 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.21%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C110:91 scaffold211 SAMTools SNP 1112297 1112297 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold211 SAMTools SNP 1112439 1112439 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C29:32 scaffold211 SAMTools SNP 1113844 1113844 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold211 SAMTools SNP 1113878 1113878 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold211 SAMTools SNP 1116442 1116442 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D37.4%3BPV4%3D0.33%2C0.058%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C65:67 scaffold211 SAMTools SNP 1116454 1116454 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.43%2C0.031%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C132:37 scaffold211 SAMTools SNP 1120509 1120509 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold211 SAMTools SNP 1120516 1120516 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold211 SAMTools SNP 1120530 1120530 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold211 SAMTools SNP 1120554 1120554 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 1135325 1135325 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold211 SAMTools SNP 1135343 1135343 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold211 SAMTools SNP 1135652 1135652 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold211 SAMTools SNP 1144012 1144012 22.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold211 SAMTools SNP 1144145 1144145 39.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold211 SAMTools SNP 1144203 1144203 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold211 SAMTools SNP 1145728 1145728 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C253:99 scaffold211 SAMTools SNP 1146071 1146071 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold211 SAMTools SNP 1146093 1146093 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold211 SAMTools SNP 1146154 1146154 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C9%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.042%2C1.5e-17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold211 SAMTools SNP 1146690 1146690 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold211 SAMTools SNP 1146869 1146869 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold211 SAMTools SNP 1146884 1146884 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.23%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold211 SAMTools SNP 1146893 1146893 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.1%2C0.2%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold211 SAMTools SNP 1147110 1147110 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.092%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold211 SAMTools SNP 1148815 1148815 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold211 SAMTools SNP 1149184 1149184 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C6.2e-06%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C166:46 scaffold211 SAMTools SNP 1150027 1150027 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold211 SAMTools SNP 1152033 1152033 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1152067 1152067 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 1153110 1153110 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1154054 1154054 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold211 SAMTools SNP 1155257 1155257 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold211 SAMTools SNP 1159918 1159918 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold211 SAMTools SNP 1160536 1160536 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 1160554 1160554 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1160990 1160990 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold211 SAMTools SNP 1161491 1161491 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 1161785 1161785 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold211 SAMTools SNP 1171088 1171088 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1171305 1171305 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 1171679 1171679 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold211 SAMTools SNP 1172276 1172276 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold211 SAMTools SNP 1172580 1172580 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1177163 1177163 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1182645 1182645 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1182650 1182650 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1183755 1183755 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1183761 1183761 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1190739 1190739 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1190795 1190795 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold211 SAMTools SNP 1191296 1191296 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold211 SAMTools SNP 1191389 1191389 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C14%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.061%2C1.2e-32%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold211 SAMTools SNP 1191730 1191730 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1191832 1191832 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold211 SAMTools SNP 1192161 1192161 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold211 SAMTools SNP 1192209 1192209 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold211 SAMTools SNP 1192218 1192218 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold211 SAMTools SNP 1192248 1192248 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.11%2C0.39%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold211 SAMTools SNP 1192642 1192642 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.047%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold211 SAMTools SNP 1192654 1192654 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C152:99 scaffold211 SAMTools SNP 1193493 1193493 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold211 SAMTools SNP 1194247 1194247 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold211 SAMTools SNP 1195533 1195533 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold211 SAMTools SNP 1195581 1195581 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold211 SAMTools SNP 1199425 1199425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1199481 1199481 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C7%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C8.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold211 SAMTools SNP 1199692 1199692 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C23%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C163:99 scaffold211 SAMTools SNP 1199783 1199783 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold211 SAMTools SNP 1199827 1199827 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C200:99 scaffold211 SAMTools SNP 1200235 1200235 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold211 SAMTools SNP 1200270 1200270 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C9.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold211 SAMTools SNP 1212911 1212911 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1219682 1219682 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold211 SAMTools SNP 1221726 1221726 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1221768 1221768 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold211 SAMTools SNP 1222862 1222862 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.26%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C231:99 scaffold211 SAMTools SNP 1222988 1222988 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold211 SAMTools SNP 1223501 1223501 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold211 SAMTools SNP 1223520 1223520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold211 SAMTools SNP 1223577 1223577 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C20%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold211 SAMTools SNP 1226226 1226226 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.013%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold211 SAMTools SNP 1228683 1228683 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold211 SAMTools SNP 1228701 1228701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold211 SAMTools SNP 1233236 1233236 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold211 SAMTools SNP 1233269 1233269 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold211 SAMTools SNP 1233683 1233683 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold211 SAMTools SNP 1234891 1234891 39.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold211 SAMTools SNP 1234941 1234941 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold211 SAMTools SNP 1234990 1234990 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C0%2C12%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0068%2C8.6e-09%2C1%2C2.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold211 SAMTools SNP 1235442 1235442 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.55%2C2.8e-07%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold211 SAMTools SNP 1237213 1237213 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C42%2C0:81 scaffold211 SAMTools SNP 1246336 1246336 6.98 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold211 SAMTools SNP 1246352 1246352 4.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold211 SAMTools SNP 1255061 1255061 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C25%2C28%2C43%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.15%2C0.41%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1259070 1259070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C187%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold211 SAMTools SNP 1262388 1262388 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold211 SAMTools SNP 1265973 1265973 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.66%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold211 SAMTools SNP 1265978 1265978 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold211 SAMTools SNP 1266542 1266542 222 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0%2C255%2C4%2C252:57 scaffold211 SAMTools SNP 1270056 1270056 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold211 SAMTools SNP 1270077 1270077 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold211 SAMTools SNP 1273142 1273142 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C26%2C24%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold211 SAMTools SNP 1273214 1273214 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C34%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold213 SAMTools SNP 1848 1848 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C9.2e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C241:76 scaffold213 SAMTools SNP 3649 3649 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C36%2C0:69 scaffold213 SAMTools SNP 6039 6039 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C0.013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold213 SAMTools SNP 6138 6138 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold213 SAMTools SNP 6430 6430 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold213 SAMTools SNP 6442 6442 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold213 SAMTools SNP 6579 6579 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold213 SAMTools SNP 6589 6589 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold213 SAMTools SNP 7486 7486 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold213 SAMTools SNP 7498 7498 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold213 SAMTools SNP 15411 15411 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold213 SAMTools SNP 15767 15767 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold213 SAMTools SNP 15841 15841 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 16683 16683 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold213 SAMTools SNP 16695 16695 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 16809 16809 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold213 SAMTools SNP 17486 17486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold213 SAMTools SNP 20747 20747 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C13%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.38%2C9.3e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold213 SAMTools SNP 20851 20851 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C0.39%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold213 SAMTools SNP 21290 21290 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold213 SAMTools SNP 23033 23033 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold213 SAMTools SNP 23790 23790 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold213 SAMTools SNP 24223 24223 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold213 SAMTools SNP 24248 24248 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold213 SAMTools SNP 24281 24281 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 26585 26585 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold213 SAMTools SNP 27066 27066 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C198:99 scaffold213 SAMTools SNP 27952 27952 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold213 SAMTools SNP 27958 27958 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold213 SAMTools SNP 27982 27982 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold213 SAMTools SNP 28896 28896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold213 SAMTools SNP 28959 28959 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold213 SAMTools SNP 29475 29475 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold213 SAMTools SNP 29595 29595 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 32598 32598 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold213 SAMTools SNP 33633 33633 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.29%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C175:99 scaffold213 SAMTools SNP 36530 36530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C12%3BMQ%3D46%3BFQ%3D129%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold213 SAMTools SNP 36694 36694 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 37797 37797 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold213 SAMTools SNP 37812 37812 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold213 SAMTools SNP 53245 53245 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 53274 53274 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold213 SAMTools SNP 54512 54512 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold213 SAMTools SNP 54525 54525 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold213 SAMTools SNP 175057 175057 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 10869 10869 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C255%2C0:99 scaffold215 SAMTools SNP 10898 10898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold215 SAMTools SNP 11268 11268 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C39%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C190%2C0:99 scaffold215 SAMTools SNP 11325 11325 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold215 SAMTools SNP 12456 12456 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C43%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold215 SAMTools SNP 12918 12918 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00046%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C225:42 scaffold215 SAMTools SNP 12948 12948 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 12957 12957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C30%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 16888 16888 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold215 SAMTools SNP 17692 17692 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold215 SAMTools SNP 18668 18668 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold215 SAMTools SNP 19593 19593 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold215 SAMTools SNP 20029 20029 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 20177 20177 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold215 SAMTools SNP 52210 52210 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold215 SAMTools SNP 53015 53015 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold215 SAMTools SNP 53530 53530 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold215 SAMTools SNP 54475 54475 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold215 SAMTools SNP 67157 67157 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 67187 67187 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold215 SAMTools SNP 68987 68987 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 70431 70431 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 70819 70819 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 74546 74546 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 77259 77259 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 87756 87756 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold215 SAMTools SNP 87830 87830 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C39%2C0:75 scaffold215 SAMTools SNP 88710 88710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 89511 89511 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold215 SAMTools SNP 89643 89643 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold215 SAMTools SNP 89646 89646 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold215 SAMTools SNP 90026 90026 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C37%2C38%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 90535 90535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 90559 90559 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C24%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 91100 91100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold215 SAMTools SNP 91127 91127 48.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold215 SAMTools SNP 91235 91235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold215 SAMTools SNP 91584 91584 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C7%2C17%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C3.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold215 SAMTools SNP 91647 91647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold215 SAMTools SNP 92199 92199 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold215 SAMTools SNP 95804 95804 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold215 SAMTools SNP 101725 101725 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold215 SAMTools SNP 102362 102362 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold215 SAMTools SNP 102383 102383 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold215 SAMTools SNP 102395 102395 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold215 SAMTools SNP 103143 103143 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold215 SAMTools SNP 103527 103527 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold215 SAMTools SNP 103590 103590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold215 SAMTools SNP 103791 103791 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.08%2C5.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold215 SAMTools SNP 104070 104070 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C17%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C4.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold215 SAMTools SNP 104158 104158 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C35%2C51%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D6.1e-08%2C8.2e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold215 SAMTools SNP 104411 104411 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold215 SAMTools SNP 114471 114471 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.8e-15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold215 SAMTools SNP 117627 117627 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 117794 117794 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold215 SAMTools SNP 117798 117798 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 122048 122048 24.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C18%2C0:32 scaffold215 SAMTools SNP 123930 123930 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 124426 124426 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold215 SAMTools SNP 124539 124539 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold215 SAMTools SNP 126053 126053 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold215 SAMTools SNP 126201 126201 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold215 SAMTools SNP 126393 126393 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold215 SAMTools SNP 126877 126877 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 127227 127227 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold215 SAMTools SNP 127908 127908 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C210:36 scaffold215 SAMTools SNP 128870 128870 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C8.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C119:79 scaffold215 SAMTools SNP 130395 130395 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold215 SAMTools SNP 132439 132439 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold215 SAMTools SNP 133387 133387 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold215 SAMTools SNP 134190 134190 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold215 SAMTools SNP 134220 134220 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold215 SAMTools SNP 134832 134832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold215 SAMTools SNP 135500 135500 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold215 SAMTools SNP 137017 137017 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold215 SAMTools SNP 137435 137435 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold215 SAMTools SNP 137508 137508 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold215 SAMTools SNP 137635 137635 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C49%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.42%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold215 SAMTools SNP 137889 137889 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold215 SAMTools SNP 138001 138001 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C134:99 scaffold215 SAMTools SNP 138683 138683 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold215 SAMTools SNP 157088 157088 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold218 SAMTools SNP 833 833 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold218 SAMTools SNP 840 840 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold218 SAMTools SNP 1119 1119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5223%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C4700%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold218 SAMTools SNP 1572 1572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D893%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D417%2C95%2C273%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C3e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 2010 2010 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.011%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C42:45 scaffold218 SAMTools SNP 2014 2014 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D589%3BVDB%3D0.0033%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C11:14 scaffold218 SAMTools SNP 6056 6056 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C39%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 6358 6358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C69%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold218 SAMTools SNP 6916 6916 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C12%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1.1e-05%2C0.4%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold218 SAMTools SNP 6958 6958 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D3.4e-06%2C0.39%2C1%2C4.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C241:99 scaffold218 SAMTools SNP 7310 7310 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold218 SAMTools SNP 7781 7781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold218 SAMTools SNP 7799 7799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold218 SAMTools SNP 7883 7883 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C112:99 scaffold218 SAMTools SNP 8216 8216 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 8779 8779 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C24%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 13402 13402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C17%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 14630 14630 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C5.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C56:59 scaffold218 SAMTools SNP 17210 17210 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C89%2C1%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 18101 18101 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 18134 18134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C50%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 19030 19030 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C3%2C82%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.56%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold218 SAMTools SNP 19031 19031 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C88%2C0%2C36%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.56%2C1%2C1%2C5.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold218 SAMTools SNP 19058 19058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C119%2C0%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 19588 19588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold218 SAMTools SNP 19591 19591 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold218 SAMTools SNP 19915 19915 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C17%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.28%2C0.28%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold218 SAMTools SNP 19979 19979 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 20003 20003 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold218 SAMTools SNP 20317 20317 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold218 SAMTools SNP 21799 21799 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C228:98 scaffold218 SAMTools SNP 23112 23112 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.025%2C0.4%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C230:98 scaffold218 SAMTools SNP 23236 23236 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C115:80 scaffold218 SAMTools SNP 23248 23248 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C188:99 scaffold218 SAMTools SNP 23466 23466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold218 SAMTools SNP 23478 23478 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold218 SAMTools SNP 23502 23502 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.13%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold218 SAMTools SNP 23873 23873 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold218 SAMTools SNP 23963 23963 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold218 SAMTools SNP 23984 23984 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold218 SAMTools SNP 24905 24905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 25189 25189 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold218 SAMTools SNP 25220 25220 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D28.9%3BPV4%3D1%2C0.28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C71:59 scaffold218 SAMTools SNP 25960 25960 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold218 SAMTools SNP 27902 27902 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold218 SAMTools SNP 27932 27932 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold218 SAMTools SNP 27938 27938 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold218 SAMTools SNP 32668 32668 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold218 SAMTools SNP 36961 36961 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold218 SAMTools SNP 37680 37680 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold218 SAMTools SNP 37719 37719 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold218 SAMTools SNP 37785 37785 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold218 SAMTools SNP 38030 38030 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold218 SAMTools SNP 38461 38461 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold218 SAMTools SNP 38630 38630 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold218 SAMTools SNP 38881 38881 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold218 SAMTools SNP 38971 38971 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 38974 38974 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 39334 39334 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C21%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold218 SAMTools SNP 40569 40569 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 40993 40993 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C36%2C0:69 scaffold218 SAMTools SNP 41058 41058 223 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C145:99 scaffold218 SAMTools SNP 41089 41089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold218 SAMTools SNP 41810 41810 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold218 SAMTools SNP 41822 41822 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold218 SAMTools SNP 41844 41844 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold218 SAMTools SNP 41855 41855 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold218 SAMTools SNP 42181 42181 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold218 SAMTools SNP 65517 65517 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 65542 65542 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold218 SAMTools SNP 65544 65544 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.035%2C0.29%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C182:99 scaffold218 SAMTools SNP 65574 65574 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C206:99 scaffold218 SAMTools SNP 74721 74721 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold218 SAMTools SNP 74869 74869 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold218 SAMTools SNP 85279 85279 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C69:72 scaffold218 SAMTools SNP 86671 86671 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C102:36 scaffold218 SAMTools SNP 86674 86674 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.38%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C60:63 scaffold218 SAMTools SNP 86725 86725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold218 SAMTools SNP 91284 91284 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold218 SAMTools SNP 92593 92593 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold218 SAMTools SNP 92640 92640 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold218 SAMTools SNP 92834 92834 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold218 SAMTools SNP 93191 93191 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C112:99 scaffold218 SAMTools SNP 93286 93286 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold218 SAMTools SNP 93335 93335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C11%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold218 SAMTools SNP 93456 93456 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold218 SAMTools SNP 93507 93507 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold218 SAMTools SNP 100812 100812 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold218 SAMTools SNP 100853 100853 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold218 SAMTools SNP 100857 100857 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C150:31 scaffold218 SAMTools SNP 100883 100883 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C213:57 scaffold218 SAMTools SNP 101051 101051 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C69:72 scaffold218 SAMTools SNP 101123 101123 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C11%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C205%2C0:99 scaffold218 SAMTools SNP 101483 101483 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C51%2C0:99 scaffold218 SAMTools SNP 101752 101752 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 101797 101797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold218 SAMTools SNP 101890 101890 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold218 SAMTools SNP 102581 102581 72 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C21%2C101%2C0%2C98:16 scaffold218 SAMTools SNP 102587 102587 83.5 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C18%2C111%2C0%2C108:21 scaffold218 SAMTools SNP 102668 102668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 102700 102700 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold218 SAMTools SNP 103130 103130 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold218 SAMTools SNP 103498 103498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold218 SAMTools SNP 104193 104193 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold218 SAMTools SNP 104282 104282 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold218 SAMTools SNP 104582 104582 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 104663 104663 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold218 SAMTools SNP 104681 104681 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold218 SAMTools SNP 105078 105078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold218 SAMTools SNP 105151 105151 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.48%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C243:99 scaffold218 SAMTools SNP 106156 106156 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold218 SAMTools SNP 107547 107547 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold218 SAMTools SNP 108361 108361 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold218 SAMTools SNP 108371 108371 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold218 SAMTools SNP 108423 108423 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold218 SAMTools SNP 108433 108433 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold218 SAMTools SNP 108494 108494 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C6%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.69%2C8.2e-15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold218 SAMTools SNP 108924 108924 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold218 SAMTools SNP 108925 108925 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold218 SAMTools SNP 109881 109881 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C102:99 scaffold218 SAMTools SNP 121666 121666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold218 SAMTools SNP 123990 123990 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold218 SAMTools SNP 124011 124011 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold218 SAMTools SNP 125332 125332 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold218 SAMTools SNP 125867 125867 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold218 SAMTools SNP 132026 132026 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold218 SAMTools SNP 132836 132836 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold218 SAMTools SNP 132843 132843 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold218 SAMTools SNP 132851 132851 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.53%2C0.36%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold218 SAMTools SNP 138581 138581 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold218 SAMTools SNP 138600 138600 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold218 SAMTools SNP 141030 141030 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold218 SAMTools SNP 141101 141101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.02%2C0.13%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold218 SAMTools SNP 158594 158594 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold218 SAMTools SNP 158607 158607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold218 SAMTools SNP 158696 158696 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C95:98 scaffold218 SAMTools SNP 158758 158758 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold218 SAMTools SNP 164250 164250 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold218 SAMTools SNP 164262 164262 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold218 SAMTools SNP 164823 164823 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold218 SAMTools SNP 164825 164825 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold218 SAMTools SNP 166577 166577 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold218 SAMTools SNP 168457 168457 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold218 SAMTools SNP 168469 168469 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold218 SAMTools SNP 171145 171145 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold218 SAMTools SNP 171211 171211 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold218 SAMTools SNP 172661 172661 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold218 SAMTools SNP 174905 174905 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold218 SAMTools SNP 174923 174923 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold218 SAMTools SNP 174959 174959 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold218 SAMTools SNP 175677 175677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold218 SAMTools SNP 176379 176379 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold218 SAMTools SNP 176403 176403 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold218 SAMTools SNP 176475 176475 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold218 SAMTools SNP 177685 177685 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.28%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold218 SAMTools SNP 177889 177889 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold218 SAMTools SNP 189661 189661 25.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold218 SAMTools SNP 189740 189740 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C48%2C0:92 scaffold219 SAMTools SNP 220 220 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 2541 2541 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold219 SAMTools SNP 13512 13512 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 13904 13904 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold219 SAMTools SNP 32802 32802 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold219 SAMTools SNP 49275 49275 13 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold219 SAMTools SNP 49276 49276 28 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold219 SAMTools SNP 82718 82718 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 82727 82727 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 82764 82764 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold219 SAMTools SNP 82777 82777 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold219 SAMTools SNP 82779 82779 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold219 SAMTools SNP 83343 83343 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold219 SAMTools SNP 84104 84104 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 84156 84156 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold219 SAMTools SNP 84442 84442 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D5.28%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C43:30 scaffold219 SAMTools SNP 84611 84611 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 84676 84676 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 85437 85437 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 85466 85466 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 93883 93883 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 93899 93899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 103776 103776 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.022%2C1.1e-06%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold219 SAMTools SNP 125881 125881 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold219 SAMTools SNP 125951 125951 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold219 SAMTools SNP 126165 126165 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold219 SAMTools SNP 126304 126304 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold219 SAMTools SNP 136274 136274 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C30%2C0:57 scaffold219 SAMTools SNP 136491 136491 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold219 SAMTools SNP 138022 138022 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 138292 138292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 143116 143116 5.08 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.8293%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D21%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C1:6 scaffold219 SAMTools SNP 152935 152935 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold219 SAMTools SNP 152937 152937 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold219 SAMTools SNP 152993 152993 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 152998 152998 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 153050 153050 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C38:41 scaffold219 SAMTools SNP 153439 153439 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold219 SAMTools SNP 154240 154240 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold219 SAMTools SNP 154785 154785 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C5e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C74:31 scaffold219 SAMTools SNP 155081 155081 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.44%2C0.012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C181:95 scaffold219 SAMTools SNP 155110 155110 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1e-06%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C177:99 scaffold219 SAMTools SNP 174084 174084 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 174759 174759 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 175059 175059 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold219 SAMTools SNP 175772 175772 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold219 SAMTools SNP 176121 176121 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 192567 192567 7.89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D1%2C1.6e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C5%2C0:6 scaffold219 SAMTools SNP 201224 201224 47.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D24%3BFQ%3D-31%3BPV4%3D0.17%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C4%2C0:7 scaffold219 SAMTools SNP 201891 201891 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold219 SAMTools SNP 202112 202112 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold219 SAMTools SNP 202145 202145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold219 SAMTools SNP 202325 202325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold219 SAMTools SNP 202358 202358 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold219 SAMTools SNP 202460 202460 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold219 SAMTools SNP 203771 203771 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold219 SAMTools SNP 204052 204052 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold219 SAMTools SNP 210274 210274 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.46%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold219 SAMTools SNP 210325 210325 207 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold219 SAMTools SNP 211304 211304 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold219 SAMTools SNP 211388 211388 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold219 SAMTools SNP 215052 215052 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C1%2C2%3BMQ%3D45%3BFQ%3D44%3BPV4%3D0.032%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold219 SAMTools SNP 215133 215133 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C8%2C1%3BMQ%3D46%3BFQ%3D137%3BPV4%3D0.056%2C0.19%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold219 SAMTools SNP 215154 215154 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C5%2C1%3BMQ%3D46%3BFQ%3D101%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold219 SAMTools SNP 215563 215563 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 217719 217719 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.00026%2C1%2C1%2C8.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold219 SAMTools SNP 217785 217785 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C60%2C0:99 scaffold219 SAMTools SNP 218527 218527 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0%2C89%2C3%2C86:10 scaffold219 SAMTools SNP 221989 221989 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D25%3BFQ%3D6.98%3BPV4%3D1%2C0.31%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C33:36 scaffold219 SAMTools SNP 222271 222271 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C33%2C0:63 scaffold219 SAMTools SNP 224545 224545 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold219 SAMTools SNP 224821 224821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold219 SAMTools SNP 225159 225159 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold219 SAMTools SNP 225410 225410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold219 SAMTools SNP 225428 225428 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold219 SAMTools SNP 225696 225696 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold219 SAMTools SNP 225738 225738 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 225768 225768 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold219 SAMTools SNP 225789 225789 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold219 SAMTools SNP 225801 225801 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold219 SAMTools SNP 226325 226325 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold219 SAMTools SNP 226355 226355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 229196 229196 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold219 SAMTools SNP 229952 229952 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold219 SAMTools SNP 229975 229975 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold219 SAMTools SNP 230009 230009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold219 SAMTools SNP 230281 230281 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 231881 231881 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C51%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold219 SAMTools SNP 232179 232179 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C33%2C32%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.85%2C2.3e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold219 SAMTools SNP 232338 232338 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold219 SAMTools SNP 232739 232739 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D85.9%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C113:99 scaffold219 SAMTools SNP 232746 232746 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.3%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C151:99 scaffold219 SAMTools SNP 233869 233869 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C6%2C17%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.52%2C5.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold219 SAMTools SNP 234703 234703 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C0%2C13%3BMQ%3D49%3BFQ%3D40%3BPV4%3D0.082%2C7.5e-10%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold219 SAMTools SNP 239057 239057 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold219 SAMTools SNP 239937 239937 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C30:33 scaffold219 SAMTools SNP 240301 240301 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold219 SAMTools SNP 241048 241048 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold219 SAMTools SNP 241069 241069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold219 SAMTools SNP 241745 241745 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold219 SAMTools SNP 242600 242600 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold219 SAMTools SNP 243154 243154 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C0.068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C20:23 scaffold219 SAMTools SNP 243902 243902 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold219 SAMTools SNP 244323 244323 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold219 SAMTools SNP 244870 244870 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold219 SAMTools SNP 244960 244960 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 245085 245085 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold219 SAMTools SNP 245304 245304 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D46%3BFQ%3D92.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C124:99 scaffold219 SAMTools SNP 245649 245649 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold219 SAMTools SNP 245688 245688 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold219 SAMTools SNP 246699 246699 94.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C15%2C0:27 scaffold219 SAMTools SNP 247538 247538 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 247539 247539 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 248087 248087 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 249058 249058 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold219 SAMTools SNP 254388 254388 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold219 SAMTools SNP 255273 255273 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold219 SAMTools SNP 255651 255651 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold219 SAMTools SNP 255666 255666 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 255890 255890 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold219 SAMTools SNP 255907 255907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 262794 262794 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold219 SAMTools SNP 262824 262824 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold219 SAMTools SNP 263880 263880 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold219 SAMTools SNP 263901 263901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold219 SAMTools SNP 264111 264111 36 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C19%2C10%2C65%2C0%2C62:16 scaffold219 SAMTools SNP 264899 264899 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold219 SAMTools SNP 264930 264930 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold219 SAMTools SNP 269280 269280 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 272689 272689 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C19%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.25%2C0.39%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold219 SAMTools SNP 272726 272726 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.047%2C0.32%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold219 SAMTools SNP 273080 273080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold219 SAMTools SNP 273525 273525 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C209:99 scaffold219 SAMTools SNP 273531 273531 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold219 SAMTools SNP 274166 274166 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold219 SAMTools SNP 274332 274332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold219 SAMTools SNP 274381 274381 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C117%2C0:99 scaffold219 SAMTools SNP 274449 274449 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold219 SAMTools SNP 274666 274666 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold219 SAMTools SNP 274875 274875 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 275631 275631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold219 SAMTools SNP 280409 280409 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold219 SAMTools SNP 280481 280481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold219 SAMTools SNP 280514 280514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold219 SAMTools SNP 281054 281054 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C246:99 scaffold219 SAMTools SNP 281084 281084 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C241:99 scaffold219 SAMTools SNP 281105 281105 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.24%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C215:99 scaffold219 SAMTools SNP 281625 281625 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.024%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold219 SAMTools SNP 281682 281682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold219 SAMTools SNP 282148 282148 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.32%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold219 SAMTools SNP 282160 282160 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C8%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.67%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold219 SAMTools SNP 282166 282166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 282452 282452 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold219 SAMTools SNP 282488 282488 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C32%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold219 SAMTools SNP 282834 282834 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C9%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C230:99 scaffold219 SAMTools SNP 282885 282885 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold219 SAMTools SNP 282942 282942 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 282984 282984 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold219 SAMTools SNP 283459 283459 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 283477 283477 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 283541 283541 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold219 SAMTools SNP 284020 284020 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold219 SAMTools SNP 285330 285330 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold219 SAMTools SNP 285369 285369 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C33%2C0:63 scaffold219 SAMTools SNP 297767 297767 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 298082 298082 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 299376 299376 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold219 SAMTools SNP 299392 299392 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold219 SAMTools SNP 299993 299993 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold219 SAMTools SNP 299995 299995 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold219 SAMTools SNP 300059 300059 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold219 SAMTools SNP 300116 300116 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 300468 300468 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 300882 300882 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold219 SAMTools SNP 300903 300903 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold219 SAMTools SNP 301680 301680 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold219 SAMTools SNP 301713 301713 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold219 SAMTools SNP 301722 301722 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold219 SAMTools SNP 301764 301764 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold219 SAMTools SNP 302186 302186 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold219 SAMTools SNP 302307 302307 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C0%2C29%3BMQ%3D50%3BFQ%3D99%3BPV4%3D7.1e-06%2C8.6e-07%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold219 SAMTools SNP 302309 302309 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C1%2C19%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.098%2C1.1e-06%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold219 SAMTools SNP 302354 302354 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C17%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 302713 302713 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.21%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 302949 302949 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 302955 302955 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold219 SAMTools SNP 302961 302961 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.61%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold219 SAMTools SNP 303436 303436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold219 SAMTools SNP 303733 303733 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold219 SAMTools SNP 304919 304919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold219 SAMTools SNP 304979 304979 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.14%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C199:99 scaffold219 SAMTools SNP 305731 305731 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C246:99 scaffold219 SAMTools SNP 305818 305818 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C2%3BMQ%3D43%3BFQ%3D17.1%3BPV4%3D1%2C1%2C0.39%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C230:47 scaffold219 SAMTools SNP 305837 305837 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C4%2C2%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D0.044%2C1%2C8.3e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold219 SAMTools SNP 305854 305854 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C2%3BMQ%3D41%3BFQ%3D83%3BPV4%3D1%2C0.14%2C0.026%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold219 SAMTools SNP 308610 308610 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold219 SAMTools SNP 308616 308616 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold219 SAMTools SNP 308682 308682 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold219 SAMTools SNP 308709 308709 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C41:44 scaffold219 SAMTools SNP 308748 308748 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold219 SAMTools SNP 309007 309007 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold219 SAMTools SNP 309015 309015 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold219 SAMTools SNP 309075 309075 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C52:55 scaffold219 SAMTools SNP 309102 309102 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold219 SAMTools SNP 309846 309846 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold219 SAMTools SNP 310179 310179 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold219 SAMTools SNP 310221 310221 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold219 SAMTools SNP 310784 310784 42.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold219 SAMTools SNP 311038 311038 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.42%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold219 SAMTools SNP 311275 311275 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold219 SAMTools SNP 311326 311326 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C177:42 scaffold219 SAMTools SNP 312014 312014 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold219 SAMTools SNP 312200 312200 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold219 SAMTools SNP 321078 321078 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold219 SAMTools SNP 321269 321269 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C252:54 scaffold219 SAMTools SNP 329170 329170 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 329223 329223 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold219 SAMTools SNP 330720 330720 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold219 SAMTools SNP 333087 333087 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 333228 333228 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 334293 334293 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold219 SAMTools SNP 334360 334360 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C121:99 scaffold219 SAMTools SNP 335019 335019 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C191:70 scaffold219 SAMTools SNP 335031 335031 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 338194 338194 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold219 SAMTools SNP 339130 339130 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold219 SAMTools SNP 339131 339131 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold219 SAMTools SNP 339417 339417 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold219 SAMTools SNP 362450 362450 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold219 SAMTools SNP 363944 363944 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C5%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0022%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold219 SAMTools SNP 366119 366119 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C25%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.28%2C6.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold219 SAMTools SNP 366164 366164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold219 SAMTools SNP 367465 367465 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.073%2C4.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold219 SAMTools SNP 367911 367911 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C224:99 scaffold219 SAMTools SNP 368749 368749 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.0011%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold219 SAMTools SNP 371492 371492 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C6%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 374192 374192 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold219 SAMTools SNP 375467 375467 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold219 SAMTools SNP 385932 385932 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C39%2C0:75 scaffold219 SAMTools SNP 385958 385958 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 386180 386180 42.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold219 SAMTools SNP 387966 387966 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.3%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold219 SAMTools SNP 387978 387978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold219 SAMTools SNP 388502 388502 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold219 SAMTools SNP 389243 389243 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold219 SAMTools SNP 389293 389293 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold219 SAMTools SNP 389691 389691 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold219 SAMTools SNP 391262 391262 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold219 SAMTools SNP 391473 391473 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C241:99 scaffold219 SAMTools SNP 395582 395582 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold219 SAMTools SNP 397932 397932 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C7.1e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C104:43 scaffold219 SAMTools SNP 400679 400679 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold219 SAMTools SNP 401154 401154 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C3.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C243:37 scaffold219 SAMTools SNP 403455 403455 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold219 SAMTools SNP 421325 421325 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold219 SAMTools SNP 429299 429299 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 437431 437431 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D26%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C138%2C0:99 scaffold219 SAMTools SNP 437438 437438 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D30%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C157%2C0:99 scaffold219 SAMTools SNP 453020 453020 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold219 SAMTools SNP 453159 453159 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold219 SAMTools SNP 464981 464981 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold219 SAMTools SNP 465179 465179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold219 SAMTools SNP 465209 465209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold219 SAMTools SNP 465554 465554 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold219 SAMTools SNP 466059 466059 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.53%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold219 SAMTools SNP 466111 466111 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 466315 466315 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.52%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold219 SAMTools SNP 466716 466716 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C57%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold219 SAMTools SNP 468171 468171 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold219 SAMTools SNP 468367 468367 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0019%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold219 SAMTools SNP 468759 468759 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold219 SAMTools SNP 469131 469131 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 471385 471385 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D31%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.32%2C0.12%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold219 SAMTools SNP 471590 471590 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C70%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 471793 471793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C47%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold219 SAMTools SNP 471807 471807 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.0063%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C198:99 scaffold22 SAMTools SNP 14168 14168 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 14186 14186 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold22 SAMTools SNP 14201 14201 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 15798 15798 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold22 SAMTools SNP 15838 15838 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold22 SAMTools SNP 19015 19015 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C68:71 scaffold22 SAMTools SNP 19496 19496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 19756 19756 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold22 SAMTools SNP 19937 19937 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold22 SAMTools SNP 19946 19946 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C166:36 scaffold22 SAMTools SNP 26515 26515 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.62%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold22 SAMTools SNP 26519 26519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 35753 35753 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold22 SAMTools SNP 37463 37463 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold22 SAMTools SNP 37469 37469 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.36%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold22 SAMTools SNP 41339 41339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold22 SAMTools SNP 42534 42534 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.095%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C179:99 scaffold22 SAMTools SNP 42820 42820 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold22 SAMTools SNP 42992 42992 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold22 SAMTools SNP 43078 43078 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold22 SAMTools SNP 43977 43977 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold22 SAMTools SNP 44217 44217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold22 SAMTools SNP 44634 44634 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold22 SAMTools SNP 46399 46399 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0018%2C0.00024%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold22 SAMTools SNP 47561 47561 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold22 SAMTools SNP 47903 47903 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold22 SAMTools SNP 71694 71694 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold22 SAMTools SNP 71823 71823 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C142:99 scaffold22 SAMTools SNP 74617 74617 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold22 SAMTools SNP 87316 87316 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C65%2C0:99 scaffold22 SAMTools SNP 87845 87845 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C49%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D1%2C0.0023%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C120%2C0:99 scaffold22 SAMTools SNP 87926 87926 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C0.051%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C88:91 scaffold22 SAMTools SNP 88225 88225 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold22 SAMTools SNP 88258 88258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 88381 88381 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C51%2C0:99 scaffold22 SAMTools SNP 89700 89700 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 92008 92008 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold22 SAMTools SNP 92189 92189 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold22 SAMTools SNP 92222 92222 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 101820 101820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 116450 116450 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold22 SAMTools SNP 116731 116731 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C6%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.088%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold22 SAMTools SNP 116774 116774 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 124225 124225 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C47%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C3.7e-79%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold22 SAMTools SNP 124568 124568 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C44%2C102%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 124594 124594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C38%2C90%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 125490 125490 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C36%2C61%2C32%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.22%2C5.3e-161%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold22 SAMTools SNP 126058 126058 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C49%2C3%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold22 SAMTools SNP 127691 127691 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold22 SAMTools SNP 127784 127784 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold22 SAMTools SNP 128525 128525 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold22 SAMTools SNP 128541 128541 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold22 SAMTools SNP 134527 134527 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold22 SAMTools SNP 135250 135250 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 135361 135361 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold22 SAMTools SNP 135370 135370 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold22 SAMTools SNP 135947 135947 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold22 SAMTools SNP 135959 135959 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold22 SAMTools SNP 135962 135962 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold22 SAMTools SNP 137677 137677 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 138864 138864 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold22 SAMTools SNP 138873 138873 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold22 SAMTools SNP 139454 139454 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold22 SAMTools SNP 140393 140393 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold22 SAMTools SNP 140599 140599 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold22 SAMTools SNP 140654 140654 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 141297 141297 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.42%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C2:5 scaffold22 SAMTools SNP 141774 141774 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.28%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold22 SAMTools SNP 141823 141823 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D37.3%3BPV4%3D1%2C4.1e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C66:67 scaffold22 SAMTools SNP 141940 141940 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold22 SAMTools SNP 142196 142196 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 144148 144148 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 145697 145697 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 145700 145700 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 145965 145965 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold22 SAMTools SNP 146754 146754 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold22 SAMTools SNP 146847 146847 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 147379 147379 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold22 SAMTools SNP 147387 147387 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 147392 147392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 147427 147427 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 147579 147579 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold22 SAMTools SNP 147693 147693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold22 SAMTools SNP 149533 149533 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold22 SAMTools SNP 149557 149557 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold22 SAMTools SNP 149955 149955 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 150013 150013 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 151670 151670 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 151698 151698 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 152141 152141 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 152204 152204 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold22 SAMTools SNP 152899 152899 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 153160 153160 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 154629 154629 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold22 SAMTools SNP 157703 157703 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold22 SAMTools SNP 157878 157878 85 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold22 SAMTools SNP 158461 158461 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.37%2C0.31%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold22 SAMTools SNP 158482 158482 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 159333 159333 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C241:99 scaffold22 SAMTools SNP 159381 159381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold22 SAMTools SNP 159828 159828 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.67%2C0.044%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold22 SAMTools SNP 159935 159935 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.65%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold22 SAMTools SNP 160700 160700 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.11%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold22 SAMTools SNP 160765 160765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold22 SAMTools SNP 160980 160980 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 162394 162394 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold22 SAMTools SNP 180080 180080 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold22 SAMTools SNP 181058 181058 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold22 SAMTools SNP 181163 181163 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold22 SAMTools SNP 181405 181405 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C54%2C0:99 scaffold22 SAMTools SNP 181799 181799 65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold22 SAMTools SNP 182166 182166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C14%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.64%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold22 SAMTools SNP 187762 187762 15.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold22 SAMTools SNP 188047 188047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold22 SAMTools SNP 188055 188055 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 188689 188689 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold22 SAMTools SNP 188727 188727 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C21%2C0:39 scaffold22 SAMTools SNP 188739 188739 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D46%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C136:82 scaffold22 SAMTools SNP 188741 188741 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D48%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold22 SAMTools SNP 188776 188776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold22 SAMTools SNP 190545 190545 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold22 SAMTools SNP 192743 192743 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold22 SAMTools SNP 193207 193207 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 193269 193269 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 196456 196456 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 196468 196468 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C11%2C55%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C0.015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C59:62 scaffold22 SAMTools SNP 196469 196469 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C55%2C2%2C37%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.12%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C125:36 scaffold22 SAMTools SNP 197860 197860 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold22 SAMTools SNP 198572 198572 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.29%2C0.086%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C251:99 scaffold22 SAMTools SNP 198584 198584 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold22 SAMTools SNP 198620 198620 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold22 SAMTools SNP 200062 200062 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold22 SAMTools SNP 200080 200080 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C18%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.013%2C0.25%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold22 SAMTools SNP 200860 200860 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.022%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C237:99 scaffold22 SAMTools SNP 201130 201130 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold22 SAMTools SNP 203694 203694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C209%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 206799 206799 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C66%2C36%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00078%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 207016 207016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C33%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold22 SAMTools SNP 207046 207046 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C40%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 207668 207668 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C50%2C0%2C23%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold22 SAMTools SNP 207683 207683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C8%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.34%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 208165 208165 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.44%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold22 SAMTools SNP 209789 209789 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C31%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold22 SAMTools SNP 209914 209914 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C47%2C27%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C5.3e-26%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 211135 211135 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C12%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold22 SAMTools SNP 211217 211217 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 214262 214262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 215377 215377 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold22 SAMTools SNP 215405 215405 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.13%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C106:79 scaffold22 SAMTools SNP 264575 264575 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.077%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold22 SAMTools SNP 264596 264596 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 265313 265313 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 265349 265349 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C42%2C0:81 scaffold22 SAMTools SNP 266858 266858 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 267583 267583 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold22 SAMTools SNP 267797 267797 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.28%2C8.6e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold22 SAMTools SNP 269199 269199 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold22 SAMTools SNP 269210 269210 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 269234 269234 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold22 SAMTools SNP 269280 269280 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 270309 270309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold22 SAMTools SNP 270356 270356 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 270747 270747 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 271101 271101 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold22 SAMTools SNP 273008 273008 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.63%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold22 SAMTools SNP 273041 273041 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold22 SAMTools SNP 273544 273544 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.14%2C0.017%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold22 SAMTools SNP 274409 274409 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 276316 276316 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold22 SAMTools SNP 281011 281011 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold22 SAMTools SNP 283716 283716 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold22 SAMTools SNP 285537 285537 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C54%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold22 SAMTools SNP 285585 285585 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.58%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold22 SAMTools SNP 285616 285616 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold22 SAMTools SNP 285994 285994 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C44%2C13%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.00078%2C0.35%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold22 SAMTools SNP 287162 287162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 287452 287452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C14%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold22 SAMTools SNP 292020 292020 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 292416 292416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold22 SAMTools SNP 292772 292772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold22 SAMTools SNP 293343 293343 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 295959 295959 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C57%2C0:99 scaffold22 SAMTools SNP 296283 296283 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold22 SAMTools SNP 296932 296932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold22 SAMTools SNP 296983 296983 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 297304 297304 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 297403 297403 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 297445 297445 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 298355 298355 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold22 SAMTools SNP 299520 299520 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold22 SAMTools SNP 299561 299561 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 303810 303810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C9%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 303904 303904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C92%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 304116 304116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C2%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 304334 304334 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C146%2C55%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 304520 304520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C53%2C58%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.04%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 305045 305045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C85%2C7%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 305099 305099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C8.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 305385 305385 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 305605 305605 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.27%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C174:99 scaffold22 SAMTools SNP 306350 306350 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C9%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 306746 306746 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C15%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 307215 307215 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 307245 307245 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 307293 307293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C18%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold22 SAMTools SNP 307716 307716 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C8%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00048%2C1.8e-11%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold22 SAMTools SNP 307769 307769 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C39%2C55%2C53%3BMQ%3D50%3BFQ%3D181%3BPV4%3D5.7e-09%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold22 SAMTools SNP 308033 308033 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C53%2C1%2C35%3BMQ%3D50%3BFQ%3D144%3BPV4%3D3.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold22 SAMTools SNP 308098 308098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold22 SAMTools SNP 308101 308101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C26%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold22 SAMTools SNP 308686 308686 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C41%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold22 SAMTools SNP 309343 309343 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold22 SAMTools SNP 309440 309440 25.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold22 SAMTools SNP 309669 309669 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C6%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.12%2C0.053%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold22 SAMTools SNP 309681 309681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold22 SAMTools SNP 309774 309774 45.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold22 SAMTools SNP 312260 312260 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C142%2C0%2C128%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.9e-263%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold22 SAMTools SNP 315468 315468 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 315603 315603 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 315789 315789 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 318524 318524 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.4%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C247:99 scaffold22 SAMTools SNP 324649 324649 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold22 SAMTools SNP 324840 324840 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.014%2C5.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold22 SAMTools SNP 324883 324883 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.055%2C5.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold22 SAMTools SNP 325208 325208 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C13%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.018%2C3.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold22 SAMTools SNP 325265 325265 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C9%2C50%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0032%2C1.5e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold22 SAMTools SNP 325274 325274 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C29%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.045%2C6.1e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold22 SAMTools SNP 325586 325586 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C48%2C39%2C53%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.42%2C1.2e-152%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold22 SAMTools SNP 325932 325932 81 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C57%2C0%2C112%2C42%2C109:99 scaffold22 SAMTools SNP 332364 332364 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C240:43 scaffold22 SAMTools SNP 334290 334290 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold22 SAMTools SNP 334293 334293 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 334423 334423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 335219 335219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 335314 335314 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D47%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C198:99 scaffold22 SAMTools SNP 336597 336597 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold22 SAMTools SNP 337877 337877 81.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold22 SAMTools SNP 337905 337905 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C13%2C15%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.062%2C2.7e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold22 SAMTools SNP 338011 338011 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C2.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 338544 338544 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D48%3BFQ%3D118%3BPV4%3D1%2C2.1e-13%2C0.24%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C145:99 scaffold22 SAMTools SNP 338598 338598 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 338599 338599 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 355553 355553 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold22 SAMTools SNP 355560 355560 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold22 SAMTools SNP 355753 355753 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold22 SAMTools SNP 358799 358799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 358808 358808 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 361307 361307 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C255%2C0:99 scaffold22 SAMTools SNP 361493 361493 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C154%2C7%2C151%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 361658 361658 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C450%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 362551 362551 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C1%2C16%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.11%2C2.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold22 SAMTools SNP 362600 362600 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.38%2C5.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold22 SAMTools SNP 363216 363216 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.6%3BPV4%3D0.2%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C35:38 scaffold22 SAMTools SNP 363718 363718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C48%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold22 SAMTools SNP 365891 365891 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 370252 370252 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold22 SAMTools SNP 371423 371423 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 372815 372815 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold22 SAMTools SNP 375111 375111 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold22 SAMTools SNP 377195 377195 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold22 SAMTools SNP 377863 377863 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold22 SAMTools SNP 377981 377981 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.044%2C0.00071%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold22 SAMTools SNP 377984 377984 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.044%2C0.0097%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold22 SAMTools SNP 377986 377986 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold22 SAMTools SNP 378341 378341 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 381022 381022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold22 SAMTools SNP 381989 381989 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold22 SAMTools SNP 382004 382004 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C219:64 scaffold22 SAMTools SNP 382034 382034 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold22 SAMTools SNP 382469 382469 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 384053 384053 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold22 SAMTools SNP 385822 385822 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 386157 386157 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 386783 386783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C44%2C19%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.72%2C6.6e-06%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold22 SAMTools SNP 386855 386855 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C40%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold22 SAMTools SNP 387109 387109 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C9.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold22 SAMTools SNP 387175 387175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold22 SAMTools SNP 387718 387718 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold22 SAMTools SNP 387724 387724 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.028%2C0.15%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold22 SAMTools SNP 387772 387772 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold22 SAMTools SNP 387778 387778 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 388224 388224 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.015%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold22 SAMTools SNP 388303 388303 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C102%2C0:99 scaffold22 SAMTools SNP 393232 393232 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 394161 394161 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold22 SAMTools SNP 394162 394162 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold22 SAMTools SNP 397693 397693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold22 SAMTools SNP 398081 398081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold22 SAMTools SNP 398091 398091 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold22 SAMTools SNP 399147 399147 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.29%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold22 SAMTools SNP 399347 399347 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 399411 399411 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 399823 399823 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C84:87 scaffold22 SAMTools SNP 400650 400650 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.077%2C0.12%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold22 SAMTools SNP 401202 401202 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold22 SAMTools SNP 401213 401213 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold22 SAMTools SNP 401821 401821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold22 SAMTools SNP 401890 401890 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold22 SAMTools SNP 401923 401923 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.043%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C223:99 scaffold22 SAMTools SNP 402107 402107 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0023%2C5e-07%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold22 SAMTools SNP 403407 403407 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold22 SAMTools SNP 403445 403445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold22 SAMTools SNP 403612 403612 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold22 SAMTools SNP 403666 403666 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold22 SAMTools SNP 403696 403696 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 404027 404027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold22 SAMTools SNP 404332 404332 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 404803 404803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 405857 405857 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold22 SAMTools SNP 405879 405879 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 405947 405947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold22 SAMTools SNP 406328 406328 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold22 SAMTools SNP 406451 406451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold22 SAMTools SNP 406895 406895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 406915 406915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C17%2C37%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 407257 407257 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C19%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 407272 407272 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C10%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1.9e-05%2C0.4%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold22 SAMTools SNP 407329 407329 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C42%2C1%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold22 SAMTools SNP 407335 407335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold22 SAMTools SNP 408547 408547 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold22 SAMTools SNP 410299 410299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold22 SAMTools SNP 410642 410642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold22 SAMTools SNP 415535 415535 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold22 SAMTools SNP 415622 415622 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C4.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C202:99 scaffold22 SAMTools SNP 416408 416408 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C2%2C10%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold22 SAMTools SNP 416438 416438 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold22 SAMTools SNP 418050 418050 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 418124 418124 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C21%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.73%2C2.2e-51%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold22 SAMTools SNP 419696 419696 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C30%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C126%2C0:99 scaffold22 SAMTools SNP 419746 419746 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C78%2C2%2C70%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.013%2C3.1e-105%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold22 SAMTools SNP 420890 420890 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C30%2C0:57 scaffold22 SAMTools SNP 421386 421386 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C18%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C108%2C0:99 scaffold22 SAMTools SNP 421743 421743 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold22 SAMTools SNP 422085 422085 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C8.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 422703 422703 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold22 SAMTools SNP 422709 422709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C28%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C8.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 422718 422718 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C37%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.013%2C7.3e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold22 SAMTools SNP 422775 422775 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C0%2C29%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.13%2C1.5e-29%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold22 SAMTools SNP 422892 422892 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C36%2C0:69 scaffold22 SAMTools SNP 423374 423374 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold22 SAMTools SNP 423522 423522 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C23%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1.7e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold22 SAMTools SNP 424257 424257 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C13%2C33%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.6%2C1.3e-73%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold22 SAMTools SNP 424310 424310 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold22 SAMTools SNP 424791 424791 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C24%2C0:45 scaffold22 SAMTools SNP 426450 426450 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C8%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.39%2C7.7e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold22 SAMTools SNP 426549 426549 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C13%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C4.8e-17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold22 SAMTools SNP 426962 426962 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C48%2C0:93 scaffold22 SAMTools SNP 428304 428304 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C6%2C16%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.77%2C6.1e-28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold22 SAMTools SNP 434662 434662 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold22 SAMTools SNP 434705 434705 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold22 SAMTools SNP 456271 456271 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 456381 456381 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold22 SAMTools SNP 459740 459740 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 459799 459799 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold22 SAMTools SNP 465356 465356 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 465706 465706 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 467637 467637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold22 SAMTools SNP 468325 468325 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.23%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold22 SAMTools SNP 468346 468346 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold22 SAMTools SNP 468753 468753 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 468796 468796 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 469037 469037 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 469058 469058 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 469748 469748 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C158:99 scaffold22 SAMTools SNP 469757 469757 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold22 SAMTools SNP 469796 469796 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold22 SAMTools SNP 470437 470437 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold22 SAMTools SNP 470464 470464 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold22 SAMTools SNP 470927 470927 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold22 SAMTools SNP 470969 470969 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.58%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold22 SAMTools SNP 471357 471357 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold22 SAMTools SNP 471798 471798 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold22 SAMTools SNP 471800 471800 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold22 SAMTools SNP 471956 471956 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C29%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold22 SAMTools SNP 471971 471971 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C11%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.43%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold22 SAMTools SNP 472019 472019 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold22 SAMTools SNP 473140 473140 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold22 SAMTools SNP 473738 473738 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 473739 473739 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold22 SAMTools SNP 474949 474949 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold22 SAMTools SNP 475631 475631 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.53%2C0.014%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold22 SAMTools SNP 475919 475919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold22 SAMTools SNP 476030 476030 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold22 SAMTools SNP 476498 476498 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C2.1e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold22 SAMTools SNP 477881 477881 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold22 SAMTools SNP 486845 486845 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold22 SAMTools SNP 486981 486981 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold22 SAMTools SNP 487101 487101 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 487159 487159 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold22 SAMTools SNP 490737 490737 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold22 SAMTools SNP 490803 490803 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 491419 491419 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold22 SAMTools SNP 496600 496600 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold22 SAMTools SNP 498864 498864 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold22 SAMTools SNP 498933 498933 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0166%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold22 SAMTools SNP 498939 498939 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold22 SAMTools SNP 499318 499318 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C181:99 scaffold22 SAMTools SNP 501885 501885 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C98:99 scaffold22 SAMTools SNP 501905 501905 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold22 SAMTools SNP 502750 502750 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold22 SAMTools SNP 503891 503891 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 503892 503892 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 512506 512506 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 513259 513259 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold22 SAMTools SNP 514899 514899 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold22 SAMTools SNP 514911 514911 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold22 SAMTools SNP 517757 517757 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.078%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold22 SAMTools SNP 517775 517775 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold22 SAMTools SNP 517796 517796 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.51%2C4.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold22 SAMTools SNP 517841 517841 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold22 SAMTools SNP 517862 517862 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C253:99 scaffold22 SAMTools SNP 518295 518295 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold22 SAMTools SNP 518742 518742 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C220:56 scaffold22 SAMTools SNP 520623 520623 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold22 SAMTools SNP 520848 520848 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C43:33 scaffold22 SAMTools SNP 522775 522775 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 524647 524647 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold22 SAMTools SNP 524653 524653 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold22 SAMTools SNP 524673 524673 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold22 SAMTools SNP 524688 524688 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold22 SAMTools SNP 524858 524858 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold22 SAMTools SNP 525179 525179 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 527056 527056 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold22 SAMTools SNP 529539 529539 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold22 SAMTools SNP 529563 529563 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold22 SAMTools SNP 530056 530056 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold22 SAMTools SNP 530364 530364 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold22 SAMTools SNP 530386 530386 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C147:99 scaffold22 SAMTools SNP 531477 531477 221 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C24%2C0:45 scaffold22 SAMTools SNP 532392 532392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 532404 532404 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 533524 533524 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold22 SAMTools SNP 533545 533545 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold22 SAMTools SNP 533651 533651 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold22 SAMTools SNP 534588 534588 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold22 SAMTools SNP 535088 535088 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold22 SAMTools SNP 535427 535427 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold22 SAMTools SNP 535878 535878 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 535882 535882 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 536302 536302 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 536609 536609 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D0.1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold22 SAMTools SNP 536868 536868 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold22 SAMTools SNP 536897 536897 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 536964 536964 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 537141 537141 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 538655 538655 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 538750 538750 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 538757 538757 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C49:49 scaffold22 SAMTools SNP 538768 538768 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C77:80 scaffold22 SAMTools SNP 540534 540534 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold22 SAMTools SNP 540753 540753 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 544130 544130 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 544145 544145 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 545445 545445 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C221:42 scaffold22 SAMTools SNP 548378 548378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold22 SAMTools SNP 548443 548443 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.33%2C0.078%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold22 SAMTools SNP 548465 548465 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold22 SAMTools SNP 548902 548902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold22 SAMTools SNP 549117 549117 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 549155 549155 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 550198 550198 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 550583 550583 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11%3BPV4%3D1%2C0.002%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold22 SAMTools SNP 551311 551311 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C75%2C0:99 scaffold22 SAMTools SNP 555259 555259 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 555324 555324 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 556248 556248 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 556274 556274 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 561198 561198 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 563559 563559 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold22 SAMTools SNP 565808 565808 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold22 SAMTools SNP 565821 565821 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.23%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold22 SAMTools SNP 566230 566230 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold22 SAMTools SNP 566362 566362 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 567259 567259 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 567285 567285 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold22 SAMTools SNP 567332 567332 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold22 SAMTools SNP 567678 567678 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0075%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C153:99 scaffold22 SAMTools SNP 567691 567691 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold22 SAMTools SNP 567704 567704 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 567717 567717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold22 SAMTools SNP 567979 567979 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 571331 571331 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 572880 572880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 620506 620506 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 621601 621601 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold22 SAMTools SNP 621663 621663 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00046%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold22 SAMTools SNP 621698 621698 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.43%2C0.034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C163:99 scaffold22 SAMTools SNP 621749 621749 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C149:77 scaffold22 SAMTools SNP 623340 623340 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold22 SAMTools SNP 623460 623460 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold22 SAMTools SNP 667713 667713 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold22 SAMTools SNP 706908 706908 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold22 SAMTools SNP 715451 715451 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold22 SAMTools SNP 715463 715463 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold22 SAMTools SNP 724256 724256 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D635%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 725058 725058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D954%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D308%2C340%2C102%2C197%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 725142 725142 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D896%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C118%2C64%2C376%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1.1e-47%2C2.2e-289%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold22 SAMTools SNP 730402 730402 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 730750 730750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C95%2C231%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 730762 730762 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C85%2C75%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold22 SAMTools SNP 730822 730822 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1428%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D716%2C306%2C292%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D2.3e-33%2C1%2C1%2C1.9e-50;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold22 SAMTools SNP 730858 730858 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1331%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D454%2C56%2C532%2C174%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-10%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 730888 730888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1649%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C1%2C1146%2C480%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.45%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 731073 731073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1226%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D327%2C513%2C245%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-20%2C1e-22%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 731871 731871 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2290%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1088%2C242%2C700%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 737015 737015 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold22 SAMTools SNP 737023 737023 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold22 SAMTools SNP 738432 738432 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.56%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C212:55 scaffold22 SAMTools SNP 741671 741671 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C8%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.00063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold22 SAMTools SNP 741930 741930 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold22 SAMTools SNP 742143 742143 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold22 SAMTools SNP 742194 742194 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold22 SAMTools SNP 742197 742197 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold22 SAMTools SNP 742198 742198 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold22 SAMTools SNP 742467 742467 175 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.24%2C0.22%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C197:99 scaffold22 SAMTools SNP 742493 742493 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.27%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold22 SAMTools SNP 742932 742932 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.35%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold22 SAMTools SNP 742944 742944 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold22 SAMTools SNP 745228 745228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C5%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 745242 745242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C6%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold22 SAMTools SNP 745295 745295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 745316 745316 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 745514 745514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 746307 746307 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 746319 746319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold22 SAMTools SNP 752430 752430 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 753990 753990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold22 SAMTools SNP 754009 754009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold22 SAMTools SNP 754084 754084 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 795860 795860 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold22 SAMTools SNP 795971 795971 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold22 SAMTools SNP 796094 796094 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold22 SAMTools SNP 796374 796374 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 796626 796626 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C18%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C220:99 scaffold22 SAMTools SNP 796639 796639 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold22 SAMTools SNP 796649 796649 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold22 SAMTools SNP 796671 796671 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold22 SAMTools SNP 814046 814046 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold22 SAMTools SNP 814078 814078 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold22 SAMTools SNP 814341 814341 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C74:30 scaffold22 SAMTools SNP 815597 815597 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 823062 823062 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold22 SAMTools SNP 824220 824220 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold22 SAMTools SNP 828150 828150 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 830256 830256 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C22%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D2.7e-06%2C0.4%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C132:99 scaffold22 SAMTools SNP 830290 830290 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 831887 831887 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 832061 832061 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold22 SAMTools SNP 832102 832102 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold22 SAMTools SNP 832109 832109 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 832836 832836 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold22 SAMTools SNP 833017 833017 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.52%2C4.9e-09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C158:67 scaffold22 SAMTools SNP 833510 833510 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold22 SAMTools SNP 837819 837819 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold22 SAMTools SNP 840771 840771 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.47%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C166:53 scaffold22 SAMTools SNP 840840 840840 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C221:99 scaffold22 SAMTools SNP 841149 841149 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 842901 842901 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C5.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold22 SAMTools SNP 843719 843719 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C4%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.4%2C8.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold22 SAMTools SNP 843862 843862 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C7.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold22 SAMTools SNP 845385 845385 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold22 SAMTools SNP 846054 846054 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold22 SAMTools SNP 846344 846344 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 846361 846361 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold22 SAMTools SNP 846764 846764 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.042%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 848497 848497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 848907 848907 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C15%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold22 SAMTools SNP 848962 848962 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C49%2C9%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D9.4e-05%2C0.15%2C1%2C5.2e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold22 SAMTools SNP 852624 852624 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 855581 855581 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold22 SAMTools SNP 857348 857348 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold22 SAMTools SNP 857517 857517 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C27%2C0:51 scaffold22 SAMTools SNP 857541 857541 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold22 SAMTools SNP 857943 857943 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 857988 857988 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold22 SAMTools SNP 858051 858051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold22 SAMTools SNP 858070 858070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.58%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold22 SAMTools SNP 858484 858484 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold22 SAMTools SNP 860367 860367 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold22 SAMTools SNP 860375 860375 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold22 SAMTools SNP 860679 860679 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold22 SAMTools SNP 860682 860682 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold22 SAMTools SNP 862202 862202 8.75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold22 SAMTools SNP 867797 867797 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold22 SAMTools SNP 867803 867803 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold22 SAMTools SNP 868759 868759 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold22 SAMTools SNP 869497 869497 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold22 SAMTools SNP 869512 869512 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold22 SAMTools SNP 869563 869563 39.8 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C24%2C70%2C0%2C67:10 scaffold22 SAMTools SNP 869968 869968 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 871306 871306 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 871665 871665 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 871686 871686 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 874230 874230 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 878078 878078 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold22 SAMTools SNP 878097 878097 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold22 SAMTools SNP 878736 878736 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 878887 878887 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 878932 878932 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 885799 885799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 886312 886312 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0032%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.023%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold22 SAMTools SNP 886870 886870 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold22 SAMTools SNP 887234 887234 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold22 SAMTools SNP 887675 887675 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold22 SAMTools SNP 888134 888134 217 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5%2C230%2C0%2C227:81 scaffold22 SAMTools SNP 888155 888155 88 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold22 SAMTools SNP 888342 888342 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D39%3BFQ%3D74.6%3BPV4%3D0.57%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C103:99 scaffold22 SAMTools SNP 888633 888633 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold22 SAMTools SNP 889626 889626 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold22 SAMTools SNP 889916 889916 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D80%3BPV4%3D1%2C0.026%2C0.45%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C153:99 scaffold22 SAMTools SNP 889917 889917 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-24%3BPV4%3D1%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C3:6 scaffold22 SAMTools SNP 890333 890333 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C30%2C0:57 scaffold22 SAMTools SNP 890813 890813 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C21%2C0:39 scaffold22 SAMTools SNP 890851 890851 90.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold22 SAMTools SNP 890863 890863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 890876 890876 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D45%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C192:99 scaffold22 SAMTools SNP 892138 892138 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 894182 894182 85.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C18%2C0:33 scaffold22 SAMTools SNP 898615 898615 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 899343 899343 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 901441 901441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold22 SAMTools SNP 901548 901548 11.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold22 SAMTools SNP 901634 901634 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C2.6e-12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C96:55 scaffold22 SAMTools SNP 901673 901673 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold22 SAMTools SNP 902010 902010 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 902315 902315 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold22 SAMTools SNP 902334 902334 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold22 SAMTools SNP 902481 902481 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 902820 902820 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold22 SAMTools SNP 902988 902988 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold22 SAMTools SNP 903859 903859 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D43%3BFQ%3D6.99%3BPV4%3D0.37%2C0.41%2C0.36%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C125:33 scaffold22 SAMTools SNP 904136 904136 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D43%3BFQ%3D-42%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold22 SAMTools SNP 918750 918750 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold22 SAMTools SNP 918782 918782 104 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold22 SAMTools SNP 919022 919022 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold22 SAMTools SNP 919033 919033 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold22 SAMTools SNP 919048 919048 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 919438 919438 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold22 SAMTools SNP 919931 919931 13.2 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0%2C48%2C1%2C36:5 scaffold22 SAMTools SNP 923118 923118 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 934102 934102 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold22 SAMTools SNP 936999 936999 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 937036 937036 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 937040 937040 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0044%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold22 SAMTools SNP 937741 937741 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 939281 939281 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold22 SAMTools SNP 939465 939465 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold22 SAMTools SNP 939559 939559 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 940117 940117 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 940350 940350 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.071%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold22 SAMTools SNP 941611 941611 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 943314 943314 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.31%2C0.00014%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold22 SAMTools SNP 943473 943473 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 944517 944517 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C51%2C0:99 scaffold22 SAMTools SNP 945811 945811 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold22 SAMTools SNP 946688 946688 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold22 SAMTools SNP 1007272 1007272 51.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold22 SAMTools SNP 1008222 1008222 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.67%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold22 SAMTools SNP 1008349 1008349 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold22 SAMTools SNP 1009315 1009315 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.62%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold22 SAMTools SNP 1009324 1009324 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold22 SAMTools SNP 1013897 1013897 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C192:39 scaffold22 SAMTools SNP 1013908 1013908 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold22 SAMTools SNP 1016411 1016411 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold22 SAMTools SNP 1043913 1043913 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1046288 1046288 29.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold22 SAMTools SNP 1046434 1046434 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C42%2C0:72 scaffold22 SAMTools SNP 1046565 1046565 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C1%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold22 SAMTools SNP 1051585 1051585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1055907 1055907 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 1056483 1056483 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1056528 1056528 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold22 SAMTools SNP 1057228 1057228 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.32%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C129:99 scaffold22 SAMTools SNP 1057234 1057234 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold22 SAMTools SNP 1057283 1057283 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.044%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold22 SAMTools SNP 1058354 1058354 89 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C60%2C33%2C128%2C0%2C113:51 scaffold22 SAMTools SNP 1058408 1058408 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1058420 1058420 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 1059085 1059085 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1068177 1068177 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C7%2C0%3BMQ%3D48%3BFQ%3D118%3BPV4%3D1%2C0.31%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold22 SAMTools SNP 1068840 1068840 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C4%2C3%3BMQ%3D36%3BFQ%3D127%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold22 SAMTools SNP 1089397 1089397 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.28%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C134:79 scaffold22 SAMTools SNP 1090324 1090324 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.62%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold22 SAMTools SNP 1091793 1091793 23.5 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C17%2C5%2C51%2C0%2C48:21 scaffold22 SAMTools SNP 1126160 1126160 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold22 SAMTools SNP 1133574 1133574 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.17%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold22 SAMTools SNP 1138554 1138554 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1140353 1140353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 1148545 1148545 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C173:31 scaffold22 SAMTools SNP 1148617 1148617 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00039%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C156:40 scaffold22 SAMTools SNP 1148665 1148665 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1148668 1148668 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold22 SAMTools SNP 1151275 1151275 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold22 SAMTools SNP 1151287 1151287 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold22 SAMTools SNP 1151329 1151329 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.013%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C223:48 scaffold22 SAMTools SNP 1151341 1151341 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C233:94 scaffold22 SAMTools SNP 1154355 1154355 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1154361 1154361 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 1154391 1154391 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.16%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C197:99 scaffold22 SAMTools SNP 1155018 1155018 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.064%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C247:99 scaffold22 SAMTools SNP 1155111 1155111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold22 SAMTools SNP 1159834 1159834 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold22 SAMTools SNP 1159893 1159893 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold22 SAMTools SNP 1159905 1159905 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C18:21 scaffold22 SAMTools SNP 1160362 1160362 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold22 SAMTools SNP 1160368 1160368 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold22 SAMTools SNP 1160386 1160386 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C35:38 scaffold22 SAMTools SNP 1160413 1160413 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.013%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold22 SAMTools SNP 1160758 1160758 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.053%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold22 SAMTools SNP 1160761 1160761 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold22 SAMTools SNP 1160775 1160775 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1160784 1160784 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1160811 1160811 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1161374 1161374 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold22 SAMTools SNP 1161392 1161392 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C124:99 scaffold22 SAMTools SNP 1161416 1161416 119 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-109;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C103%2C253%2C0%2C235:99 scaffold22 SAMTools SNP 1162665 1162665 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold22 SAMTools SNP 1165675 1165675 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1167210 1167210 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold22 SAMTools SNP 1175198 1175198 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1175219 1175219 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1175225 1175225 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1175618 1175618 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold22 SAMTools SNP 1176556 1176556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 1176583 1176583 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold22 SAMTools SNP 1176997 1176997 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold22 SAMTools SNP 1177066 1177066 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold22 SAMTools SNP 1178796 1178796 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1179633 1179633 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 1180241 1180241 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold22 SAMTools SNP 1180265 1180265 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C122:40 scaffold22 SAMTools SNP 1180268 1180268 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold22 SAMTools SNP 1180316 1180316 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1183899 1183899 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1184269 1184269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1185630 1185630 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 1185631 1185631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 1187577 1187577 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 1188993 1188993 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold22 SAMTools SNP 1190816 1190816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold22 SAMTools SNP 1191149 1191149 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D129%3BPV4%3D5.4e-05%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C161:99 scaffold22 SAMTools SNP 1191154 1191154 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold22 SAMTools SNP 1191206 1191206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C7%2C11%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.053%2C1%2C0.021%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1191624 1191624 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C10%2C2%3BMQ%3D46%3BFQ%3D121%3BPV4%3D0.71%2C1%2C0.42%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold22 SAMTools SNP 1192410 1192410 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold22 SAMTools SNP 1192449 1192449 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1198950 1198950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold22 SAMTools SNP 1198981 1198981 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold22 SAMTools SNP 1199026 1199026 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C36%2C0:69 scaffold22 SAMTools SNP 1199195 1199195 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold22 SAMTools SNP 1203452 1203452 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1203536 1203536 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 1204177 1204177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold22 SAMTools SNP 1205211 1205211 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C11%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold22 SAMTools SNP 1208213 1208213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold22 SAMTools SNP 1208234 1208234 5.46 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C251%2C218%2C255%2C0%2C254:34 scaffold22 SAMTools SNP 1208390 1208390 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold22 SAMTools SNP 1209019 1209019 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C29:32 scaffold22 SAMTools SNP 1248913 1248913 33.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold22 SAMTools SNP 1249680 1249680 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold22 SAMTools SNP 1250208 1250208 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1250620 1250620 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1258999 1258999 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D22%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C219:52 scaffold22 SAMTools SNP 1259155 1259155 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1259188 1259188 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold22 SAMTools SNP 1259948 1259948 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 1268559 1268559 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.26%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold22 SAMTools SNP 1302698 1302698 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1302742 1302742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1302756 1302756 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1304674 1304674 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1304735 1304735 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold22 SAMTools SNP 1307181 1307181 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold22 SAMTools SNP 1307656 1307656 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1307674 1307674 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1329409 1329409 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 1330079 1330079 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1370558 1370558 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold22 SAMTools SNP 1374718 1374718 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold22 SAMTools SNP 1389798 1389798 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1390194 1390194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold22 SAMTools SNP 1390208 1390208 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold22 SAMTools SNP 1390306 1390306 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1390579 1390579 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold22 SAMTools SNP 1390726 1390726 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold22 SAMTools SNP 1390744 1390744 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold22 SAMTools SNP 1392255 1392255 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1392891 1392891 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold22 SAMTools SNP 1392992 1392992 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1392996 1392996 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold22 SAMTools SNP 1393014 1393014 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D91.9%3BPV4%3D0.14%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C119:99 scaffold22 SAMTools SNP 1394557 1394557 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1397298 1397298 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C66%2C0:96 scaffold22 SAMTools SNP 1398824 1398824 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 1398826 1398826 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold22 SAMTools SNP 1398853 1398853 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.078%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold22 SAMTools SNP 1400280 1400280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C36%2C18%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1400304 1400304 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C32%2C15%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1400977 1400977 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold22 SAMTools SNP 1401698 1401698 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C0%2C25%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.00093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold22 SAMTools SNP 1401725 1401725 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C40%2C0%2C27%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold22 SAMTools SNP 1402366 1402366 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold22 SAMTools SNP 1402629 1402629 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.49%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold22 SAMTools SNP 1402647 1402647 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1404107 1404107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1409514 1409514 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C109:99 scaffold22 SAMTools SNP 1409568 1409568 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.46%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C100:99 scaffold22 SAMTools SNP 1410467 1410467 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold22 SAMTools SNP 1411076 1411076 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1411113 1411113 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1413152 1413152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C32%2C32%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1413467 1413467 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C25%2C56%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1413500 1413500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1414383 1414383 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C40%2C4%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1416535 1416535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold22 SAMTools SNP 1416565 1416565 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold22 SAMTools SNP 1416969 1416969 25.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold22 SAMTools SNP 1418749 1418749 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1418908 1418908 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1418927 1418927 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1419093 1419093 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1419176 1419176 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1425052 1425052 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1425376 1425376 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold22 SAMTools SNP 1425682 1425682 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1425695 1425695 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1426376 1426376 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1426609 1426609 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1429073 1429073 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold22 SAMTools SNP 1429504 1429504 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold22 SAMTools SNP 1429510 1429510 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold22 SAMTools SNP 1432630 1432630 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold22 SAMTools SNP 1433826 1433826 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold22 SAMTools SNP 1433891 1433891 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold22 SAMTools SNP 1434079 1434079 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.051%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold22 SAMTools SNP 1434424 1434424 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold22 SAMTools SNP 1434433 1434433 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1434970 1434970 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1435476 1435476 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold22 SAMTools SNP 1435561 1435561 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold22 SAMTools SNP 1435934 1435934 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold22 SAMTools SNP 1436517 1436517 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.024%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C143:99 scaffold22 SAMTools SNP 1436641 1436641 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold22 SAMTools SNP 1438136 1438136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1438238 1438238 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1438256 1438256 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1438937 1438937 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1438943 1438943 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1439261 1439261 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1439294 1439294 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold22 SAMTools SNP 1439654 1439654 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 1439780 1439780 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold22 SAMTools SNP 1439807 1439807 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold22 SAMTools SNP 1440270 1440270 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0022%2C0.031%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold22 SAMTools SNP 1440282 1440282 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.083%2C0.046%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C176:93 scaffold22 SAMTools SNP 1440303 1440303 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C233:99 scaffold22 SAMTools SNP 1440324 1440324 44.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold22 SAMTools SNP 1440399 1440399 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold22 SAMTools SNP 1442606 1442606 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C38:41 scaffold22 SAMTools SNP 1443003 1443003 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1443050 1443050 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0187%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold22 SAMTools SNP 1443590 1443590 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold22 SAMTools SNP 1444175 1444175 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1444184 1444184 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1445333 1445333 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold22 SAMTools SNP 1446813 1446813 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1446877 1446877 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 1448734 1448734 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1451010 1451010 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold22 SAMTools SNP 1451377 1451377 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold22 SAMTools SNP 1451912 1451912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C2.4e-30%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1452045 1452045 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold22 SAMTools SNP 1452521 1452521 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold22 SAMTools SNP 1452539 1452539 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C121:99 scaffold22 SAMTools SNP 1452979 1452979 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold22 SAMTools SNP 1452981 1452981 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.36%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold22 SAMTools SNP 1453020 1453020 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1455574 1455574 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold22 SAMTools SNP 1455609 1455609 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1455828 1455828 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C32:35 scaffold22 SAMTools SNP 1456488 1456488 222 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0%2C251%2C33%2C248:99 scaffold22 SAMTools SNP 1458182 1458182 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold22 SAMTools SNP 1458919 1458919 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold22 SAMTools SNP 1458935 1458935 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold22 SAMTools SNP 1458949 1458949 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C10%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C76:79 scaffold22 SAMTools SNP 1459078 1459078 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold22 SAMTools SNP 1459090 1459090 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold22 SAMTools SNP 1459566 1459566 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1459572 1459572 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 1460178 1460178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.6%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold22 SAMTools SNP 1460359 1460359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold22 SAMTools SNP 1460817 1460817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C0.48%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold22 SAMTools SNP 1461101 1461101 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold22 SAMTools SNP 1461138 1461138 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C18%2C0:33 scaffold22 SAMTools SNP 1461161 1461161 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold22 SAMTools SNP 1461320 1461320 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold22 SAMTools SNP 1461788 1461788 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold22 SAMTools SNP 1462298 1462298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold22 SAMTools SNP 1462318 1462318 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C14%3BMQ%3D49%3BFQ%3D200%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold22 SAMTools SNP 1462355 1462355 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.15%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C216:99 scaffold22 SAMTools SNP 1462445 1462445 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1462670 1462670 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 1462972 1462972 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold22 SAMTools SNP 1463359 1463359 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1463663 1463663 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1463723 1463723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C19%2C1%3BMQ%3D47%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold22 SAMTools SNP 1463735 1463735 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C12%2C1%3BMQ%3D47%3BFQ%3D188%3BPV4%3D1%2C1%2C0.0028%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold22 SAMTools SNP 1463756 1463756 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C14%2C2%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.0038%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1464112 1464112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold22 SAMTools SNP 1464232 1464232 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold22 SAMTools SNP 1464746 1464746 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold22 SAMTools SNP 1464749 1464749 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold22 SAMTools SNP 1465224 1465224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C11%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold22 SAMTools SNP 1468543 1468543 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 1468545 1468545 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C33:36 scaffold22 SAMTools SNP 1468705 1468705 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1468897 1468897 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 1469001 1469001 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1469123 1469123 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1469300 1469300 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1470803 1470803 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C6%3BMQ%3D41%3BFQ%3D142%3BPV4%3D0.64%2C0.022%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C169:99 scaffold22 SAMTools SNP 1477992 1477992 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C37%2C200%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1480653 1480653 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold22 SAMTools SNP 1480655 1480655 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold22 SAMTools SNP 1480678 1480678 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C2%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1480887 1480887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C39%2C11%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1482224 1482224 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1482579 1482579 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1482631 1482631 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold22 SAMTools SNP 1482678 1482678 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold22 SAMTools SNP 1483216 1483216 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1483387 1483387 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1483763 1483763 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1483786 1483786 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1484168 1484168 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1484778 1484778 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold22 SAMTools SNP 1484787 1484787 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold22 SAMTools SNP 1485124 1485124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.047%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold22 SAMTools SNP 1485270 1485270 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C23%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1485317 1485317 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C19%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00061%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1485691 1485691 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1485718 1485718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1485785 1485785 48.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C26%2C8%2C71%2C0%2C68:33 scaffold22 SAMTools SNP 1485834 1485834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1486038 1486038 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C14%2C23%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1486131 1486131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold22 SAMTools SNP 1486577 1486577 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 1486852 1486852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1486865 1486865 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1487466 1487466 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold22 SAMTools SNP 1487617 1487617 64 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C19%2C10%2C93%2C0%2C90:16 scaffold22 SAMTools SNP 1487781 1487781 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold22 SAMTools SNP 1487782 1487782 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold22 SAMTools SNP 1499205 1499205 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold22 SAMTools SNP 1499781 1499781 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold22 SAMTools SNP 1500016 1500016 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C179:99 scaffold22 SAMTools SNP 1500397 1500397 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold22 SAMTools SNP 1500417 1500417 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C185:76 scaffold22 SAMTools SNP 1500421 1500421 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.051%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C124:99 scaffold22 SAMTools SNP 1530257 1530257 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold22 SAMTools SNP 1530343 1530343 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 1530652 1530652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1530897 1530897 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1547125 1547125 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold22 SAMTools SNP 1601427 1601427 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold22 SAMTools SNP 1622616 1622616 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C228:44 scaffold22 SAMTools SNP 1623078 1623078 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C80:68 scaffold22 SAMTools SNP 1623330 1623330 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C240:50 scaffold22 SAMTools SNP 1625216 1625216 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.37%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C118:44 scaffold22 SAMTools SNP 1625333 1625333 10.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold22 SAMTools SNP 1625437 1625437 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.9e-13%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold22 SAMTools SNP 1625571 1625571 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.33%2C1.7e-08%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C176:87 scaffold22 SAMTools SNP 1655712 1655712 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1655903 1655903 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C72%2C0:99 scaffold22 SAMTools SNP 1655910 1655910 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C63%2C0:99 scaffold22 SAMTools SNP 1656129 1656129 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C73%2C12%2C83%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1.1e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold22 SAMTools SNP 1656297 1656297 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold22 SAMTools SNP 1656380 1656380 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C69%2C0%2C20%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold22 SAMTools SNP 1657435 1657435 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C8%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold22 SAMTools SNP 1657450 1657450 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold22 SAMTools SNP 1657491 1657491 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold22 SAMTools SNP 1657495 1657495 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C34%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C0.41%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold22 SAMTools SNP 1657914 1657914 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1660775 1660775 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold22 SAMTools SNP 1660783 1660783 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.096%2C0.0024%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold22 SAMTools SNP 1660862 1660862 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold22 SAMTools SNP 1674560 1674560 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C8%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold22 SAMTools SNP 1676960 1676960 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1684575 1684575 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C9.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C204:76 scaffold22 SAMTools SNP 1684638 1684638 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.15%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C198:81 scaffold22 SAMTools SNP 1685190 1685190 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold22 SAMTools SNP 1685280 1685280 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold22 SAMTools SNP 1685585 1685585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold22 SAMTools SNP 1685687 1685687 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C36%2C0:69 scaffold22 SAMTools SNP 1685789 1685789 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold22 SAMTools SNP 1687056 1687056 98.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold22 SAMTools SNP 1697164 1697164 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold22 SAMTools SNP 1711645 1711645 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold22 SAMTools SNP 1713019 1713019 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 1720093 1720093 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1721363 1721363 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1721408 1721408 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1723705 1723705 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold22 SAMTools SNP 1725289 1725289 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.47%2C0.0073%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C209:93 scaffold22 SAMTools SNP 1725419 1725419 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1726407 1726407 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1743323 1743323 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold22 SAMTools SNP 1743364 1743364 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold22 SAMTools SNP 1743407 1743407 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1743425 1743425 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1743838 1743838 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1744429 1744429 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1744787 1744787 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.003%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold22 SAMTools SNP 1744798 1744798 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold22 SAMTools SNP 1745229 1745229 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold22 SAMTools SNP 1746112 1746112 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1746183 1746183 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C39%2C0:75 scaffold22 SAMTools SNP 1746227 1746227 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1746251 1746251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold22 SAMTools SNP 1751023 1751023 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold22 SAMTools SNP 1751241 1751241 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold22 SAMTools SNP 1751247 1751247 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1753683 1753683 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold22 SAMTools SNP 1753996 1753996 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C243:57 scaffold22 SAMTools SNP 1754817 1754817 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C48%2C0:93 scaffold22 SAMTools SNP 1761562 1761562 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold22 SAMTools SNP 1767876 1767876 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold22 SAMTools SNP 1770246 1770246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold22 SAMTools SNP 1770255 1770255 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold22 SAMTools SNP 1773378 1773378 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold22 SAMTools SNP 1785096 1785096 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold22 SAMTools SNP 1786236 1786236 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C20%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold22 SAMTools SNP 1786453 1786453 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C69%2C20%3BMQ%3D50%3BFQ%3D-248%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C221%2C0:99 scaffold22 SAMTools SNP 1788017 1788017 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.02%2C9.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold22 SAMTools SNP 1789739 1789739 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold22 SAMTools SNP 1791640 1791640 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold22 SAMTools SNP 1794015 1794015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold22 SAMTools SNP 1796080 1796080 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold22 SAMTools SNP 1798023 1798023 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold22 SAMTools SNP 1798037 1798037 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold22 SAMTools SNP 1799862 1799862 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold22 SAMTools SNP 1802981 1802981 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold22 SAMTools SNP 1820901 1820901 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold22 SAMTools SNP 1821006 1821006 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold22 SAMTools SNP 1821031 1821031 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1821333 1821333 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold22 SAMTools SNP 1822467 1822467 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold22 SAMTools SNP 1822868 1822868 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold22 SAMTools SNP 1822925 1822925 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold22 SAMTools SNP 1823071 1823071 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold22 SAMTools SNP 1829219 1829219 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1829289 1829289 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold22 SAMTools SNP 1829298 1829298 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1829505 1829505 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1829528 1829528 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1864883 1864883 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1865082 1865082 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold22 SAMTools SNP 1865142 1865142 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1865862 1865862 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold22 SAMTools SNP 1866792 1866792 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold22 SAMTools SNP 1867891 1867891 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold22 SAMTools SNP 1869372 1869372 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold22 SAMTools SNP 1875918 1875918 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold22 SAMTools SNP 1876409 1876409 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold22 SAMTools SNP 1877081 1877081 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C99:99 scaffold221 SAMTools SNP 46209 46209 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold221 SAMTools SNP 49746 49746 18.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold221 SAMTools SNP 82667 82667 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold221 SAMTools SNP 87055 87055 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold221 SAMTools SNP 141894 141894 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold221 SAMTools SNP 141931 141931 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold221 SAMTools SNP 196075 196075 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold221 SAMTools SNP 196468 196468 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C126:40 scaffold221 SAMTools SNP 196493 196493 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold221 SAMTools SNP 199275 199275 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold222 SAMTools SNP 41075 41075 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold222 SAMTools SNP 58977 58977 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold222 SAMTools SNP 62565 62565 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold222 SAMTools SNP 63525 63525 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold222 SAMTools SNP 98052 98052 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold222 SAMTools SNP 98448 98448 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold222 SAMTools SNP 108576 108576 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold222 SAMTools SNP 139928 139928 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold222 SAMTools SNP 140112 140112 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C235:31 scaffold222 SAMTools SNP 146496 146496 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold222 SAMTools SNP 163641 163641 25.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D0.25%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C5%2C0:9 scaffold222 SAMTools SNP 164418 164418 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 5386 5386 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 58377 58377 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C0:69 scaffold223 SAMTools SNP 63923 63923 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.7e-20%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C198:36 scaffold223 SAMTools SNP 64664 64664 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C6.2e-09%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C186:55 scaffold223 SAMTools SNP 65479 65479 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold223 SAMTools SNP 66003 66003 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold223 SAMTools SNP 66030 66030 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold223 SAMTools SNP 66051 66051 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold223 SAMTools SNP 67628 67628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 68152 68152 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold223 SAMTools SNP 68192 68192 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 68268 68268 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C73:76 scaffold223 SAMTools SNP 70383 70383 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C21%2C0:39 scaffold223 SAMTools SNP 70398 70398 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold223 SAMTools SNP 70680 70680 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.027%2C0.3%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C234:99 scaffold223 SAMTools SNP 73273 73273 55.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0%2C76%2C0%2C73:39 scaffold223 SAMTools SNP 74192 74192 47.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold223 SAMTools SNP 74374 74374 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C42%2C0:81 scaffold223 SAMTools SNP 74422 74422 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.58%2C0.002%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold223 SAMTools SNP 74891 74891 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold223 SAMTools SNP 76192 76192 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold223 SAMTools SNP 76212 76212 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold223 SAMTools SNP 76453 76453 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold223 SAMTools SNP 76519 76519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold223 SAMTools SNP 76552 76552 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C28%3BMQ%3D48%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold223 SAMTools SNP 77078 77078 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C19%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold223 SAMTools SNP 79327 79327 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C14%2C0%3BMQ%3D49%3BFQ%3D139%3BPV4%3D6.2e-05%2C1%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold223 SAMTools SNP 80979 80979 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C11%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.3e-06%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold223 SAMTools SNP 81845 81845 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C41%3BMQ%3D49%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold223 SAMTools SNP 82228 82228 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C2%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.47%2C0.063%2C0.023%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 82590 82590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 82631 82631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C14%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.012%2C0.0002%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 82699 82699 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C42%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold223 SAMTools SNP 82834 82834 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold223 SAMTools SNP 83594 83594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold223 SAMTools SNP 84009 84009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C14%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 84555 84555 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C96%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 85063 85063 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C84%2C3%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 85421 85421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 86308 86308 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold223 SAMTools SNP 86376 86376 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C31%2C112%3BMQ%3D50%3BFQ%3D-244%3BPV4%3D0.34%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold223 SAMTools SNP 87306 87306 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C89%2C0%2C30%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C3.8e-06%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold223 SAMTools SNP 89500 89500 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold223 SAMTools SNP 89848 89848 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold223 SAMTools SNP 90295 90295 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold223 SAMTools SNP 91072 91072 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.6%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold223 SAMTools SNP 91090 91090 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold223 SAMTools SNP 91096 91096 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C118:99 scaffold223 SAMTools SNP 91132 91132 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold223 SAMTools SNP 91234 91234 220 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C227:99 scaffold223 SAMTools SNP 92759 92759 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.081%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C130:99 scaffold223 SAMTools SNP 92794 92794 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.25%2C0.052%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold223 SAMTools SNP 92839 92839 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold223 SAMTools SNP 93566 93566 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0155%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.087%2C0.0002%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold223 SAMTools SNP 93581 93581 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C38:41 scaffold223 SAMTools SNP 93593 93593 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.075%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold223 SAMTools SNP 93617 93617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C14%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 100928 100928 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold223 SAMTools SNP 103047 103047 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold223 SAMTools SNP 104081 104081 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 104718 104718 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 104772 104772 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold223 SAMTools SNP 105480 105480 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold223 SAMTools SNP 105506 105506 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold223 SAMTools SNP 105581 105581 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 106275 106275 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 106278 106278 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold223 SAMTools SNP 110895 110895 25.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold223 SAMTools SNP 115867 115867 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold223 SAMTools SNP 116306 116306 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.033%2C5.9e-08%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold223 SAMTools SNP 116536 116536 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C3.8e-29%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C205:90 scaffold223 SAMTools SNP 117252 117252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C8.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold223 SAMTools SNP 117423 117423 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold223 SAMTools SNP 117452 117452 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C45%2C0:87 scaffold223 SAMTools SNP 117625 117625 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold223 SAMTools SNP 117892 117892 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold223 SAMTools SNP 117988 117988 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.26%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C77:50 scaffold223 SAMTools SNP 118073 118073 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C90%2C0:99 scaffold223 SAMTools SNP 118104 118104 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C48%2C0:93 scaffold223 SAMTools SNP 125782 125782 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.44%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C152:99 scaffold223 SAMTools SNP 128210 128210 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0011%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C85:55 scaffold223 SAMTools SNP 135350 135350 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold223 SAMTools SNP 135605 135605 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.2e-15%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C45:48 scaffold223 SAMTools SNP 196896 196896 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold223 SAMTools SNP 202104 202104 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.43%2C0.054%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C163:64 scaffold223 SAMTools SNP 202724 202724 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold223 SAMTools SNP 206174 206174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold223 SAMTools SNP 206204 206204 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold223 SAMTools SNP 206242 206242 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold223 SAMTools SNP 206514 206514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold223 SAMTools SNP 206578 206578 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold223 SAMTools SNP 206614 206614 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold223 SAMTools SNP 206679 206679 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.54%2C0.0015%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold223 SAMTools SNP 206832 206832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold223 SAMTools SNP 206901 206901 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold223 SAMTools SNP 207481 207481 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold223 SAMTools SNP 210062 210062 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold223 SAMTools SNP 210063 210063 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold223 SAMTools SNP 213981 213981 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold223 SAMTools SNP 213990 213990 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C77:80 scaffold223 SAMTools SNP 214956 214956 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold223 SAMTools SNP 214977 214977 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold223 SAMTools SNP 216476 216476 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold223 SAMTools SNP 225233 225233 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold223 SAMTools SNP 229890 229890 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 229923 229923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold223 SAMTools SNP 244684 244684 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C5.8e-07%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C121:41 scaffold223 SAMTools SNP 251392 251392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C90%2C5%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 251974 251974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold223 SAMTools SNP 252011 252011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold223 SAMTools SNP 252231 252231 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.37%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold223 SAMTools SNP 277176 277176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold223 SAMTools SNP 282461 282461 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold223 SAMTools SNP 282472 282472 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold224 SAMTools SNP 11633 11633 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 11749 11749 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold224 SAMTools SNP 11764 11764 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold224 SAMTools SNP 13475 13475 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 13883 13883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 15669 15669 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 16043 16043 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.46%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C82:85 scaffold224 SAMTools SNP 16053 16053 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold224 SAMTools SNP 16513 16513 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0047%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold224 SAMTools SNP 17025 17025 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.13%2C0.0012%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold224 SAMTools SNP 17029 17029 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold224 SAMTools SNP 17032 17032 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0061%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold224 SAMTools SNP 17981 17981 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold224 SAMTools SNP 18001 18001 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C17%3BMQ%3D45%3BFQ%3D147%3BPV4%3D0.32%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C174:99 scaffold224 SAMTools SNP 18135 18135 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C5%3BMQ%3D45%3BFQ%3D133%3BPV4%3D0.4%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold224 SAMTools SNP 18170 18170 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C4%3BMQ%3D45%3BFQ%3D58%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold224 SAMTools SNP 18175 18175 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C3%3BMQ%3D45%3BFQ%3D4.77%3BPV4%3D1%2C0.018%2C0.29%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold224 SAMTools SNP 18928 18928 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold224 SAMTools SNP 19234 19234 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold224 SAMTools SNP 19250 19250 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold224 SAMTools SNP 19259 19259 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold224 SAMTools SNP 20024 20024 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold224 SAMTools SNP 20856 20856 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold224 SAMTools SNP 20866 20866 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold224 SAMTools SNP 20939 20939 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold224 SAMTools SNP 21989 21989 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 22030 22030 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 31119 31119 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold224 SAMTools SNP 31748 31748 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold224 SAMTools SNP 31799 31799 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.063%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold224 SAMTools SNP 32058 32058 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold224 SAMTools SNP 32108 32108 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold224 SAMTools SNP 32187 32187 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold224 SAMTools SNP 32428 32428 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold224 SAMTools SNP 32450 32450 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold224 SAMTools SNP 34802 34802 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 35194 35194 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 36013 36013 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 36377 36377 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold224 SAMTools SNP 36399 36399 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 37222 37222 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold224 SAMTools SNP 38203 38203 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 40908 40908 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C4e-17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C188:99 scaffold224 SAMTools SNP 40999 40999 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold224 SAMTools SNP 41285 41285 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C72%2C0:99 scaffold224 SAMTools SNP 41325 41325 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D63%2C6%2C26%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C8.9e-98%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold224 SAMTools SNP 41343 41343 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C17%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 43162 43162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C44%2C37%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.059%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 44985 44985 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 45277 45277 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold224 SAMTools SNP 45671 45671 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C58%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold224 SAMTools SNP 45701 45701 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold224 SAMTools SNP 45915 45915 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold224 SAMTools SNP 45957 45957 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C0.0018%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold224 SAMTools SNP 49809 49809 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C12%2C58%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1.7e-19%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 51002 51002 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold224 SAMTools SNP 56049 56049 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold224 SAMTools SNP 65820 65820 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C66%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold224 SAMTools SNP 66115 66115 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold224 SAMTools SNP 66426 66426 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold224 SAMTools SNP 66438 66438 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold224 SAMTools SNP 67305 67305 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold224 SAMTools SNP 67311 67311 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold224 SAMTools SNP 67386 67386 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold224 SAMTools SNP 67497 67497 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C0.18%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 67521 67521 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold224 SAMTools SNP 67541 67541 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0055%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold224 SAMTools SNP 67611 67611 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold224 SAMTools SNP 69213 69213 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.21%2C0.27%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold224 SAMTools SNP 70025 70025 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold224 SAMTools SNP 73088 73088 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold224 SAMTools SNP 73126 73126 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D7.8e-06%2C1.4e-05%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold224 SAMTools SNP 73131 73131 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C11%2C0%2C18%3BMQ%3D50%3BFQ%3D56%3BPV4%3D5.1e-09%2C1.6e-05%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold226 SAMTools SNP 96725 96725 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 96736 96736 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 98614 98614 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 103739 103739 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D44%3BPV4%3D1%2C6.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C71:74 scaffold226 SAMTools SNP 119516 119516 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 119557 119557 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold226 SAMTools SNP 121006 121006 19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold226 SAMTools SNP 122597 122597 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 123514 123514 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold226 SAMTools SNP 123935 123935 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold226 SAMTools SNP 149851 149851 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D4.42%3BPV4%3D1%2C0.19%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C32:32 scaffold226 SAMTools SNP 149931 149931 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0034%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold226 SAMTools SNP 151868 151868 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.55%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold226 SAMTools SNP 160458 160458 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1.6e-16%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 162958 162958 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold226 SAMTools SNP 165748 165748 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C27%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.00062%2C6.3e-12%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold226 SAMTools SNP 168394 168394 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold226 SAMTools SNP 186585 186585 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold226 SAMTools SNP 188738 188738 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C2%2C17%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.093%2C0.041%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold226 SAMTools SNP 188762 188762 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C14%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C247:99 scaffold226 SAMTools SNP 188783 188783 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C228:41 scaffold226 SAMTools SNP 191839 191839 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold226 SAMTools SNP 200303 200303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold226 SAMTools SNP 200311 200311 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold226 SAMTools SNP 204891 204891 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.054%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold226 SAMTools SNP 205281 205281 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C0.029%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold226 SAMTools SNP 205284 205284 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.17%2C0.011%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C212:34 scaffold226 SAMTools SNP 205285 205285 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C159:99 scaffold226 SAMTools SNP 206243 206243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold226 SAMTools SNP 206432 206432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold226 SAMTools SNP 206605 206605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold226 SAMTools SNP 206621 206621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C48%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold226 SAMTools SNP 210844 210844 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold226 SAMTools SNP 216931 216931 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 217500 217500 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C103%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.005%2C4.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C182:99 scaffold226 SAMTools SNP 217521 217521 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C255%2C0:99 scaffold226 SAMTools SNP 218428 218428 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C60%2C8%2C33%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.8%2C1.9e-88%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold226 SAMTools SNP 218475 218475 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C12%2C10%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.38%2C3.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold226 SAMTools SNP 218583 218583 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold226 SAMTools SNP 219155 219155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C16%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 219956 219956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 219965 219965 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C56%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 220043 220043 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C18%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold226 SAMTools SNP 220259 220259 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 222020 222020 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C49%2C24%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 224855 224855 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C138:28 scaffold226 SAMTools SNP 225491 225491 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C82%2C6%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 225541 225541 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C31%2C10%2C22%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.8%2C1.3e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold226 SAMTools SNP 225673 225673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 226301 226301 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold226 SAMTools SNP 271192 271192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 271783 271783 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C2%2C55%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 272393 272393 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C10%2C17%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold226 SAMTools SNP 272396 272396 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C23%2C15%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold226 SAMTools SNP 275453 275453 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C6%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.23%2C0.12%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold226 SAMTools SNP 307622 307622 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C0.14%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C171:99 scaffold226 SAMTools SNP 319524 319524 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C14%2C21%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold226 SAMTools SNP 319845 319845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold226 SAMTools SNP 321413 321413 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C4%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold226 SAMTools SNP 323760 323760 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C18%2C71%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 331370 331370 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold226 SAMTools SNP 331457 331457 22.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold226 SAMTools SNP 332427 332427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 346710 346710 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold226 SAMTools SNP 362651 362651 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.35%2C3.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold226 SAMTools SNP 363296 363296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold226 SAMTools SNP 363370 363370 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold226 SAMTools SNP 363372 363372 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 363493 363493 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold226 SAMTools SNP 364134 364134 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.18%2C0.0005%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold226 SAMTools SNP 364329 364329 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C217:79 scaffold226 SAMTools SNP 367645 367645 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold226 SAMTools SNP 367937 367937 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold226 SAMTools SNP 368046 368046 38.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold226 SAMTools SNP 368397 368397 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold226 SAMTools SNP 370037 370037 117 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C123%2C81%2C178%2C0%2C142:81 scaffold226 SAMTools SNP 370133 370133 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 370588 370588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold226 SAMTools SNP 370591 370591 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold226 SAMTools SNP 372612 372612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold226 SAMTools SNP 372639 372639 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold226 SAMTools SNP 372693 372693 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 372726 372726 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C133%2C0%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C1%2C1%2C9.2e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C110%2C0:99 scaffold226 SAMTools SNP 374838 374838 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 374868 374868 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C152%2C77%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1.6e-38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold226 SAMTools SNP 389718 389718 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold226 SAMTools SNP 409781 409781 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 409826 409826 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C33%2C0:63 scaffold226 SAMTools SNP 409860 409860 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 409867 409867 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold226 SAMTools SNP 412242 412242 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 412287 412287 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 413123 413123 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold226 SAMTools SNP 413141 413141 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold226 SAMTools SNP 413267 413267 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C154:99 scaffold226 SAMTools SNP 413283 413283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C0.43%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 413297 413297 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 413824 413824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 413960 413960 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.53%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold226 SAMTools SNP 413995 413995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold226 SAMTools SNP 414418 414418 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold226 SAMTools SNP 414472 414472 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.037%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold226 SAMTools SNP 415420 415420 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C255%2C0:99 scaffold226 SAMTools SNP 415866 415866 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C46%2C63%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D7e-09%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold226 SAMTools SNP 416747 416747 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.6e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C102:58 scaffold226 SAMTools SNP 423719 423719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold226 SAMTools SNP 423798 423798 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.5%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold226 SAMTools SNP 423800 423800 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold226 SAMTools SNP 425117 425117 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold226 SAMTools SNP 425142 425142 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold226 SAMTools SNP 427194 427194 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C21%2C0:39 scaffold226 SAMTools SNP 427473 427473 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold226 SAMTools SNP 427493 427493 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold226 SAMTools SNP 428080 428080 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 428139 428139 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 428956 428956 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 428971 428971 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 429064 429064 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.041%2C6.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold226 SAMTools SNP 442331 442331 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.69%2C0.00013%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold226 SAMTools SNP 442371 442371 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.49%2C1.6e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold226 SAMTools SNP 442748 442748 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.44%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C189:37 scaffold226 SAMTools SNP 442754 442754 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8.3e-07%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C153:30 scaffold226 SAMTools SNP 442832 442832 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C6.4e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 443066 443066 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.57%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold226 SAMTools SNP 447637 447637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 465576 465576 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 465578 465578 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 465696 465696 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold226 SAMTools SNP 476234 476234 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold226 SAMTools SNP 477226 477226 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold226 SAMTools SNP 477235 477235 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold226 SAMTools SNP 477644 477644 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00038%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C88:36 scaffold226 SAMTools SNP 477939 477939 46.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold226 SAMTools SNP 478084 478084 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold226 SAMTools SNP 479165 479165 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 480104 480104 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 486512 486512 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold226 SAMTools SNP 486592 486592 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold226 SAMTools SNP 487774 487774 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 488290 488290 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 488540 488540 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold226 SAMTools SNP 488589 488589 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.034%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold226 SAMTools SNP 488601 488601 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00028%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C223:39 scaffold226 SAMTools SNP 488612 488612 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold226 SAMTools SNP 489380 489380 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D0.33%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C62:65 scaffold226 SAMTools SNP 489437 489437 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold226 SAMTools SNP 497036 497036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold226 SAMTools SNP 497317 497317 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C49%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold226 SAMTools SNP 497347 497347 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C63%2C140%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-24%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 498062 498062 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C0%2C85%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 498083 498083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.067%2C1%2C3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 499472 499472 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold226 SAMTools SNP 499888 499888 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold226 SAMTools SNP 500301 500301 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 500303 500303 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold226 SAMTools SNP 500922 500922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold226 SAMTools SNP 500963 500963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold226 SAMTools SNP 501305 501305 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold226 SAMTools SNP 501328 501328 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold226 SAMTools SNP 507671 507671 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold226 SAMTools SNP 509905 509905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C2%2C24%3BMQ%3D44%3BFQ%3D-73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold226 SAMTools SNP 509925 509925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C25%3BMQ%3D44%3BFQ%3D-5.45%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold226 SAMTools SNP 510552 510552 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold226 SAMTools SNP 510570 510570 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold226 SAMTools SNP 510597 510597 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold226 SAMTools SNP 510627 510627 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.5%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C243:59 scaffold226 SAMTools SNP 511001 511001 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold226 SAMTools SNP 511015 511015 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold226 SAMTools SNP 511156 511156 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold226 SAMTools SNP 511177 511177 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 511329 511329 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold226 SAMTools SNP 511359 511359 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 511848 511848 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold226 SAMTools SNP 511904 511904 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold226 SAMTools SNP 512039 512039 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold226 SAMTools SNP 512105 512105 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold226 SAMTools SNP 513181 513181 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold226 SAMTools SNP 513253 513253 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold226 SAMTools SNP 513458 513458 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold226 SAMTools SNP 513475 513475 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 513833 513833 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 513857 513857 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 513920 513920 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 514463 514463 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 515005 515005 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 515450 515450 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.58%2C0.015%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold226 SAMTools SNP 515458 515458 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold226 SAMTools SNP 515818 515818 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C68:71 scaffold226 SAMTools SNP 516541 516541 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 516576 516576 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 538908 538908 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold226 SAMTools SNP 546182 546182 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 546686 546686 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold226 SAMTools SNP 546881 546881 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C2.8e-11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C57:60 scaffold226 SAMTools SNP 561935 561935 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.47%2C3.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C203:85 scaffold226 SAMTools SNP 562466 562466 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C61%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 563719 563719 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C73%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold226 SAMTools SNP 566912 566912 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold226 SAMTools SNP 567265 567265 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold226 SAMTools SNP 575893 575893 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.14%2C1.2e-07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C121:39 scaffold226 SAMTools SNP 576243 576243 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold226 SAMTools SNP 584211 584211 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C215:77 scaffold226 SAMTools SNP 586402 586402 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold226 SAMTools SNP 586800 586800 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold226 SAMTools SNP 588937 588937 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 591478 591478 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 596937 596937 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 600992 600992 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C36%2C0:69 scaffold226 SAMTools SNP 601330 601330 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.4%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C112:68 scaffold226 SAMTools SNP 601381 601381 9.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold226 SAMTools SNP 605975 605975 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold226 SAMTools SNP 607548 607548 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C29%2C0%3BMQ%3D48%3BFQ%3D199%3BPV4%3D1%2C0.2%2C0.052%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C226:99 scaffold226 SAMTools SNP 607592 607592 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C15%2C0%3BMQ%3D46%3BFQ%3D182%3BPV4%3D0.28%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C245:99 scaffold226 SAMTools SNP 607595 607595 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C34:37 scaffold226 SAMTools SNP 607644 607644 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C0%2C13%3BMQ%3D48%3BFQ%3D12.3%3BPV4%3D0.17%2C5.8e-08%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold226 SAMTools SNP 607877 607877 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold226 SAMTools SNP 607925 607925 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 608559 608559 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 616380 616380 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold226 SAMTools SNP 617181 617181 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.045%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold226 SAMTools SNP 617196 617196 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 619182 619182 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold226 SAMTools SNP 619798 619798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.028%2C0.056%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold226 SAMTools SNP 620679 620679 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00053%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold226 SAMTools SNP 621575 621575 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold226 SAMTools SNP 621662 621662 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold226 SAMTools SNP 622102 622102 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold226 SAMTools SNP 624409 624409 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold226 SAMTools SNP 638532 638532 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C33%2C0%3BMQ%3D47%3BFQ%3D46%3BPV4%3D1%2C0.00069%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C73:76 scaffold226 SAMTools SNP 638545 638545 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold226 SAMTools SNP 638947 638947 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C10%3BMQ%3D35%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold226 SAMTools SNP 639455 639455 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C93%2C42%2C107%3BMQ%3D34%3BFQ%3D72%3BPV4%3D0.37%2C1.2e-126%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C197:99 scaffold226 SAMTools SNP 639494 639494 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C93%3BMQ%3D15%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C255%2C0:99 scaffold226 SAMTools SNP 640835 640835 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C14%2C12%3BMQ%3D49%3BFQ%3D222%3BPV4%3D2.6e-08%2C0.18%2C0.0026%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold226 SAMTools SNP 642035 642035 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C2%2C35%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.3e-06%2C0.49%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 643454 643454 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D120%2C41%2C18%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold226 SAMTools SNP 643911 643911 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C149%2C113%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-21%2C4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 643926 643926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C62%2C76%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 644862 644862 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C208%2C0%2C82%3BMQ%3D50%3BFQ%3D59%3BPV4%3D2.4e-06%2C0.098%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold226 SAMTools SNP 646974 646974 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C83%2C27%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 646991 646991 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C83%2C48%2C187%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.00033%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 647064 647064 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C248:99 scaffold226 SAMTools SNP 647132 647132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C219%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 647345 647345 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C138%2C10%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D6.3e-10%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C253:94 scaffold226 SAMTools SNP 647394 647394 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C255%2C0:99 scaffold226 SAMTools SNP 647441 647441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold226 SAMTools SNP 647950 647950 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold226 SAMTools SNP 648273 648273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C10%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold226 SAMTools SNP 648275 648275 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.35%2C1%2C1%2C7.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold226 SAMTools SNP 648736 648736 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C98%2C60%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D4.9e-09%2C0.0077%2C2.7e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold226 SAMTools SNP 648805 648805 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C188%2C10%2C99%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.00025%2C5.8e-229%2C6.1e-05%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold226 SAMTools SNP 650246 650246 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C26%2C17%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 652234 652234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C28%2C63%2C23%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.18%2C0.081%2C0.23%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 652276 652276 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D30%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C39:42 scaffold226 SAMTools SNP 653050 653050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C106%2C86%3BMQ%3D33%3BFQ%3D-282%3BPV4%3D0.45%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 653074 653074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C86%3BMQ%3D17%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 653236 653236 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D17%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C141%2C0:99 scaffold226 SAMTools SNP 653248 653248 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C7%3BMQ%3D16%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C157%2C0:99 scaffold226 SAMTools SNP 653554 653554 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D3%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C51%2C0:36 scaffold226 SAMTools SNP 653644 653644 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C41%3BMQ%3D40%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C255%2C0:99 scaffold226 SAMTools SNP 653698 653698 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C69%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold226 SAMTools SNP 653701 653701 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C70%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold226 SAMTools SNP 653913 653913 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C636%2C1%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 653931 653931 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C607%2C5%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 654194 654194 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C147%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 654591 654591 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C60%2C214%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-18%2C0.045%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 654592 654592 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C42%2C185%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-12%2C1%2C1%2C8.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 654770 654770 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C1%3BMQ%3D17%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C132%2C0:99 scaffold226 SAMTools SNP 654785 654785 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C1%3BMQ%3D37%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 658266 658266 22.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold226 SAMTools SNP 662912 662912 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold226 SAMTools SNP 674236 674236 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 703899 703899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold226 SAMTools SNP 718276 718276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D44%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold226 SAMTools SNP 719733 719733 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold226 SAMTools SNP 719753 719753 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C69:33 scaffold226 SAMTools SNP 726037 726037 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 726038 726038 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 726604 726604 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold226 SAMTools SNP 726615 726615 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C190:99 scaffold226 SAMTools SNP 727308 727308 41.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold226 SAMTools SNP 728748 728748 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 732109 732109 23.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold226 SAMTools SNP 734541 734541 24.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold226 SAMTools SNP 738394 738394 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold226 SAMTools SNP 741853 741853 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C30%2C29%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.013%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 747489 747489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C34%2C129%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 747519 747519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C69%2C101%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.01%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 747572 747572 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D467%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C162%2C64%2C134%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 748055 748055 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C101%2C57%2C52%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.025%2C0.34%2C0.44%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 748116 748116 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 749350 749350 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D804%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C583%2C219%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 751403 751403 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold226 SAMTools SNP 757500 757500 4.77 . . REF=N;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C22%2C19%2C33%2C0%2C30:3 scaffold226 SAMTools SNP 768898 768898 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.048%2C0.0056%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C155:53 scaffold226 SAMTools SNP 770677 770677 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.29%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold226 SAMTools SNP 771993 771993 18.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold226 SAMTools SNP 772622 772622 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 772673 772673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.054%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 775044 775044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 775119 775119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold226 SAMTools SNP 775132 775132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold226 SAMTools SNP 776204 776204 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C113:84 scaffold226 SAMTools SNP 776927 776927 52.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold226 SAMTools SNP 778630 778630 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold226 SAMTools SNP 778871 778871 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C5%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.14%2C1.6e-20%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold226 SAMTools SNP 778877 778877 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold226 SAMTools SNP 778984 778984 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold226 SAMTools SNP 778999 778999 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C10%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.33%2C4.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C191:99 scaffold226 SAMTools SNP 779003 779003 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.0024%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold226 SAMTools SNP 779378 779378 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C43%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.7e-72%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold226 SAMTools SNP 780226 780226 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C45%2C0:83 scaffold226 SAMTools SNP 780550 780550 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C0.0017%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C203:54 scaffold226 SAMTools SNP 780904 780904 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.63%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold226 SAMTools SNP 780939 780939 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.15%2C0.026%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold226 SAMTools SNP 780940 780940 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C0.34%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold226 SAMTools SNP 781099 781099 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold226 SAMTools SNP 781181 781181 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.12%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C152:99 scaffold226 SAMTools SNP 781225 781225 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.54%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold226 SAMTools SNP 781388 781388 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 781400 781400 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 781582 781582 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold226 SAMTools SNP 781586 781586 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C230:65 scaffold226 SAMTools SNP 781589 781589 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold226 SAMTools SNP 781601 781601 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold226 SAMTools SNP 781671 781671 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold226 SAMTools SNP 781675 781675 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold226 SAMTools SNP 781680 781680 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold226 SAMTools SNP 782997 782997 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold226 SAMTools SNP 789102 789102 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold226 SAMTools SNP 789113 789113 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold226 SAMTools SNP 789706 789706 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold226 SAMTools SNP 790053 790053 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 790074 790074 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 790861 790861 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold226 SAMTools SNP 790888 790888 88.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold226 SAMTools SNP 790966 790966 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold226 SAMTools SNP 791008 791008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold226 SAMTools SNP 791233 791233 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold226 SAMTools SNP 792253 792253 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold226 SAMTools SNP 792295 792295 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold226 SAMTools SNP 792319 792319 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold226 SAMTools SNP 792973 792973 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C33%2C0:63 scaffold226 SAMTools SNP 799990 799990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 800203 800203 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C3.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold226 SAMTools SNP 800259 800259 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.066%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold226 SAMTools SNP 800691 800691 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.41%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C234:99 scaffold226 SAMTools SNP 800709 800709 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold226 SAMTools SNP 821631 821631 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C15%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.15%2C9.5e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold226 SAMTools SNP 822114 822114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C16%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 822447 822447 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold226 SAMTools SNP 822546 822546 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C2%2C21%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.042%2C2.6e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold226 SAMTools SNP 822564 822564 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C37%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C144%2C0:99 scaffold226 SAMTools SNP 827552 827552 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 827665 827665 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 827683 827683 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold226 SAMTools SNP 832967 832967 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 835551 835551 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold226 SAMTools SNP 835830 835830 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold226 SAMTools SNP 835866 835866 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold226 SAMTools SNP 835971 835971 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold226 SAMTools SNP 837985 837985 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 839049 839049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 839102 839102 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 840642 840642 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 843050 843050 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold226 SAMTools SNP 843089 843089 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.52%2C0.013%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold226 SAMTools SNP 843654 843654 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold226 SAMTools SNP 843812 843812 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.47%2C0.052%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold226 SAMTools SNP 843839 843839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold226 SAMTools SNP 844551 844551 68.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold226 SAMTools SNP 844819 844819 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 845669 845669 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold226 SAMTools SNP 845674 845674 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold226 SAMTools SNP 846341 846341 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold226 SAMTools SNP 846346 846346 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.004%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold226 SAMTools SNP 846539 846539 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold226 SAMTools SNP 846743 846743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 846987 846987 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold226 SAMTools SNP 848539 848539 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold226 SAMTools SNP 848763 848763 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 848772 848772 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold226 SAMTools SNP 848950 848950 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold226 SAMTools SNP 849175 849175 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold226 SAMTools SNP 849220 849220 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 849517 849517 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold226 SAMTools SNP 849524 849524 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold226 SAMTools SNP 850396 850396 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold226 SAMTools SNP 850425 850425 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 850623 850623 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold226 SAMTools SNP 850952 850952 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.1%2C1%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold226 SAMTools SNP 851536 851536 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C238:99 scaffold226 SAMTools SNP 851686 851686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C57%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold226 SAMTools SNP 853880 853880 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold226 SAMTools SNP 855104 855104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold226 SAMTools SNP 855253 855253 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold226 SAMTools SNP 855262 855262 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold226 SAMTools SNP 856599 856599 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold226 SAMTools SNP 861527 861527 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold226 SAMTools SNP 864453 864453 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold226 SAMTools SNP 865453 865453 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C27%2C0:51 scaffold226 SAMTools SNP 865589 865589 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold226 SAMTools SNP 865922 865922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C20%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold226 SAMTools SNP 866081 866081 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D447%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold226 SAMTools SNP 866153 866153 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C149%2C3%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 866408 866408 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C169%2C10%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 866467 866467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C27%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 867488 867488 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 867517 867517 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C40%2C14%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.0077%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 867545 867545 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C34%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.094%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 870663 870663 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D21%2C6%2C325%2C5%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D3.8e-05%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold226 SAMTools SNP 872180 872180 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 872185 872185 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold226 SAMTools SNP 872445 872445 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C15%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 875488 875488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 878485 878485 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.095%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 879492 879492 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C246:99 scaffold226 SAMTools SNP 879702 879702 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00084%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold226 SAMTools SNP 879825 879825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C23%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold226 SAMTools SNP 880273 880273 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00026%2C9.3e-05%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 880543 880543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold226 SAMTools SNP 880674 880674 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold226 SAMTools SNP 880687 880687 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold226 SAMTools SNP 880705 880705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold226 SAMTools SNP 881181 881181 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C217:99 scaffold226 SAMTools SNP 881205 881205 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold226 SAMTools SNP 881214 881214 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold226 SAMTools SNP 881563 881563 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.013%2C0.00012%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold226 SAMTools SNP 881631 881631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.44%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 881774 881774 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 881816 881816 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.062%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold226 SAMTools SNP 881822 881822 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0034%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold226 SAMTools SNP 883222 883222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.35%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold226 SAMTools SNP 883706 883706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold226 SAMTools SNP 883955 883955 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 883994 883994 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C34%2C14%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 884718 884718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold226 SAMTools SNP 884977 884977 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 885028 885028 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold226 SAMTools SNP 885040 885040 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold226 SAMTools SNP 885180 885180 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold226 SAMTools SNP 885186 885186 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold226 SAMTools SNP 885468 885468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 885666 885666 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C126%2C4%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.00068%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 885745 885745 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C27%2C0%2C19%3BMQ%3D50%3BFQ%3D148%3BPV4%3D2.2e-05%2C1%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold226 SAMTools SNP 886201 886201 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C2%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.59%2C0.082%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold226 SAMTools SNP 886203 886203 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold226 SAMTools SNP 886217 886217 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C1%2C10%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.42%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold226 SAMTools SNP 886574 886574 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.27%2C3.8e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold226 SAMTools SNP 888200 888200 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 890796 890796 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C20%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.05%2C0.037%2C0.4%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 890819 890819 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 891587 891587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 891918 891918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.0012%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 896316 896316 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 896361 896361 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.61%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold226 SAMTools SNP 896427 896427 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 896709 896709 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C17%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold226 SAMTools SNP 896739 896739 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 897224 897224 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold226 SAMTools SNP 898089 898089 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C5%2C0:9 scaffold226 SAMTools SNP 898411 898411 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C21%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 900024 900024 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C3.4e-10%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C11:14 scaffold226 SAMTools SNP 902604 902604 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C51%2C8%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 903695 903695 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 903696 903696 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 903709 903709 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 903745 903745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold226 SAMTools SNP 904245 904245 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold226 SAMTools SNP 904260 904260 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold226 SAMTools SNP 904281 904281 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.47%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold226 SAMTools SNP 910115 910115 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold226 SAMTools SNP 926789 926789 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C0:3 scaffold226 SAMTools SNP 927261 927261 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold226 SAMTools SNP 927273 927273 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold226 SAMTools SNP 927288 927288 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.41%2C5.2e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C216:87 scaffold226 SAMTools SNP 927380 927380 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C0.0095%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C215:34 scaffold226 SAMTools SNP 927402 927402 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C160:99 scaffold226 SAMTools SNP 927414 927414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold226 SAMTools SNP 928733 928733 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold226 SAMTools SNP 930984 930984 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold226 SAMTools SNP 931014 931014 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold226 SAMTools SNP 931016 931016 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold226 SAMTools SNP 931346 931346 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C7.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold226 SAMTools SNP 931581 931581 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C20%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 936135 936135 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C33%2C0:63 scaffold226 SAMTools SNP 936764 936764 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.00045%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold226 SAMTools SNP 936776 936776 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C13%2C7%2C12%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.001%2C4.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold226 SAMTools SNP 938158 938158 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold226 SAMTools SNP 942566 942566 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C43%2C34%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.00058%2C1%2C1%2C4.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold226 SAMTools SNP 942836 942836 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C101%2C0%2C44%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0002%2C9.6e-14%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold226 SAMTools SNP 943687 943687 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C6%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.41%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold226 SAMTools SNP 944031 944031 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C72%2C0:99 scaffold226 SAMTools SNP 944090 944090 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C0%2C15%3BMQ%3D50%3BFQ%3D44%3BPV4%3D9.7e-05%2C4.7e-10%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold226 SAMTools SNP 944733 944733 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C23%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0023%2C2.1e-31%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold226 SAMTools SNP 945104 945104 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold226 SAMTools SNP 945689 945689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C231%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 948281 948281 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold226 SAMTools SNP 951002 951002 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold226 SAMTools SNP 951035 951035 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold226 SAMTools SNP 954382 954382 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold226 SAMTools SNP 954430 954430 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold226 SAMTools SNP 954448 954448 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold226 SAMTools SNP 954451 954451 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.32%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold226 SAMTools SNP 955462 955462 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold226 SAMTools SNP 959515 959515 105 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C117%2C252%2C0%2C240:39 scaffold226 SAMTools SNP 959566 959566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold226 SAMTools SNP 960621 960621 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold226 SAMTools SNP 960627 960627 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold226 SAMTools SNP 961007 961007 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C177:99 scaffold226 SAMTools SNP 961311 961311 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C232:99 scaffold226 SAMTools SNP 961851 961851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold226 SAMTools SNP 961911 961911 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C11%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.00097%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold226 SAMTools SNP 969721 969721 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C85:46 scaffold226 SAMTools SNP 969722 969722 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.019%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C32:35 scaffold226 SAMTools SNP 971164 971164 29.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold226 SAMTools SNP 971690 971690 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold226 SAMTools SNP 971844 971844 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold226 SAMTools SNP 972123 972123 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold226 SAMTools SNP 981809 981809 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold226 SAMTools SNP 982299 982299 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 982852 982852 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold226 SAMTools SNP 983299 983299 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 983308 983308 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 983743 983743 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold226 SAMTools SNP 986426 986426 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.22%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold226 SAMTools SNP 986459 986459 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C47%3BMQ%3D50%3BFQ%3D-233%3BPV4%3D0.45%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C0:99 scaffold226 SAMTools SNP 986812 986812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold226 SAMTools SNP 986944 986944 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C26%2C11%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.31%2C1.2e-52%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold226 SAMTools SNP 987484 987484 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C30%2C35%2C18%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.46%2C1.7e-84%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold226 SAMTools SNP 987595 987595 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C40%2C7%2C43%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.042%2C9.7e-89%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold226 SAMTools SNP 988207 988207 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C83%2C0%2C34%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.32%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold226 SAMTools SNP 988787 988787 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 988807 988807 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 988817 988817 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold226 SAMTools SNP 988823 988823 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold226 SAMTools SNP 989125 989125 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C155:99 scaffold226 SAMTools SNP 990092 990092 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold226 SAMTools SNP 990107 990107 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 990292 990292 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold226 SAMTools SNP 990548 990548 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.18%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold226 SAMTools SNP 990551 990551 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold226 SAMTools SNP 991266 991266 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold226 SAMTools SNP 991593 991593 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 992052 992052 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 992305 992305 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 992356 992356 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 992358 992358 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 992716 992716 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold226 SAMTools SNP 992931 992931 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold226 SAMTools SNP 993292 993292 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold226 SAMTools SNP 993390 993390 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold226 SAMTools SNP 993408 993408 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold226 SAMTools SNP 993673 993673 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold226 SAMTools SNP 993724 993724 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold226 SAMTools SNP 996545 996545 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold226 SAMTools SNP 996547 996547 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold226 SAMTools SNP 996947 996947 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold226 SAMTools SNP 996955 996955 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold226 SAMTools SNP 997523 997523 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold226 SAMTools SNP 997800 997800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 998162 998162 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 998187 998187 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold226 SAMTools SNP 998667 998667 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 998677 998677 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold226 SAMTools SNP 999073 999073 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 999451 999451 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 999481 999481 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 1000146 1000146 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold226 SAMTools SNP 1001591 1001591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold226 SAMTools SNP 1001612 1001612 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1001939 1001939 34.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold226 SAMTools SNP 1001959 1001959 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1001992 1001992 118 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C104%2C167%2C0%2C158:27 scaffold226 SAMTools SNP 1002029 1002029 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold226 SAMTools SNP 1007156 1007156 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.098%2C0.039%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold226 SAMTools SNP 1007182 1007182 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C182:63 scaffold226 SAMTools SNP 1007264 1007264 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold226 SAMTools SNP 1007285 1007285 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold226 SAMTools SNP 1007461 1007461 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 1008511 1008511 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold226 SAMTools SNP 1008542 1008542 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold226 SAMTools SNP 1010527 1010527 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C37%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold226 SAMTools SNP 1011536 1011536 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C36%2C14%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.27%2C8.7e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold226 SAMTools SNP 1011542 1011542 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C38%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 1012491 1012491 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold226 SAMTools SNP 1012739 1012739 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold226 SAMTools SNP 1012924 1012924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1012927 1012927 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1012993 1012993 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold226 SAMTools SNP 1013162 1013162 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 1013177 1013177 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 1013949 1013949 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold226 SAMTools SNP 1014079 1014079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C46%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold226 SAMTools SNP 1015882 1015882 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C18:21 scaffold226 SAMTools SNP 1016071 1016071 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 1016511 1016511 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C9%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.024%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold226 SAMTools SNP 1016514 1016514 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C10%2C13%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.58%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold226 SAMTools SNP 1017680 1017680 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold226 SAMTools SNP 1017724 1017724 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold226 SAMTools SNP 1019390 1019390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C3%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.16%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 1022598 1022598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C23%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold226 SAMTools SNP 1022980 1022980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold226 SAMTools SNP 1024886 1024886 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold226 SAMTools SNP 1032317 1032317 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C5%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C8.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold226 SAMTools SNP 1033127 1033127 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.1e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold226 SAMTools SNP 1033802 1033802 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.49%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C157:99 scaffold226 SAMTools SNP 1034132 1034132 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.28%2C2e-19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold226 SAMTools SNP 1037089 1037089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold226 SAMTools SNP 1037154 1037154 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C5.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C246:65 scaffold226 SAMTools SNP 1037174 1037174 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.51%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C233:30 scaffold226 SAMTools SNP 1037293 1037293 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C24%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.011%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold226 SAMTools SNP 1038021 1038021 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0029%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold226 SAMTools SNP 1038024 1038024 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0026%2C0.067%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold226 SAMTools SNP 1042230 1042230 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold226 SAMTools SNP 1042236 1042236 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold226 SAMTools SNP 1043243 1043243 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold226 SAMTools SNP 1043276 1043276 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C45%2C0:87 scaffold226 SAMTools SNP 1043287 1043287 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold226 SAMTools SNP 1047403 1047403 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.55%2C9.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold226 SAMTools SNP 1047647 1047647 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C21%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.032%2C6.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold226 SAMTools SNP 1048350 1048350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C6.3e-13%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold226 SAMTools SNP 1050722 1050722 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C27%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0015%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold226 SAMTools SNP 1051116 1051116 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold226 SAMTools SNP 1051183 1051183 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold226 SAMTools SNP 1053988 1053988 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold226 SAMTools SNP 1061040 1061040 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1061063 1061063 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1061374 1061374 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 1061394 1061394 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold226 SAMTools SNP 1061447 1061447 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold226 SAMTools SNP 1061650 1061650 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 1061655 1061655 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold226 SAMTools SNP 1065523 1065523 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold226 SAMTools SNP 1065895 1065895 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold226 SAMTools SNP 1065896 1065896 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.31%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold227 SAMTools SNP 7402 7402 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.024%2C3.7e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C96:76 scaffold227 SAMTools SNP 10109 10109 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold227 SAMTools SNP 31773 31773 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold227 SAMTools SNP 31893 31893 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 32576 32576 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold227 SAMTools SNP 32791 32791 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C35:28 scaffold227 SAMTools SNP 37258 37258 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold227 SAMTools SNP 38255 38255 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.29%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold227 SAMTools SNP 41540 41540 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 41546 41546 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 42255 42255 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C27%2C0:51 scaffold227 SAMTools SNP 42270 42270 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.54%2C9.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold227 SAMTools SNP 42363 42363 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C75:78 scaffold227 SAMTools SNP 42651 42651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold227 SAMTools SNP 42908 42908 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold227 SAMTools SNP 43296 43296 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold227 SAMTools SNP 43866 43866 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold227 SAMTools SNP 44829 44829 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold227 SAMTools SNP 45050 45050 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold227 SAMTools SNP 45129 45129 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold227 SAMTools SNP 45151 45151 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold227 SAMTools SNP 45613 45613 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold227 SAMTools SNP 45826 45826 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold227 SAMTools SNP 45890 45890 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 46233 46233 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold227 SAMTools SNP 46268 46268 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold227 SAMTools SNP 46948 46948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold227 SAMTools SNP 48397 48397 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 48400 48400 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 51369 51369 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 52638 52638 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold227 SAMTools SNP 52908 52908 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 54283 54283 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold227 SAMTools SNP 54331 54331 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.35%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold227 SAMTools SNP 54351 54351 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold227 SAMTools SNP 55050 55050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold227 SAMTools SNP 55078 55078 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.53%2C0.25%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold227 SAMTools SNP 55092 55092 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.53%2C0.34%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold227 SAMTools SNP 55556 55556 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C3%2C39%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.55%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold227 SAMTools SNP 55589 55589 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold227 SAMTools SNP 57737 57737 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold227 SAMTools SNP 57871 57871 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 60063 60063 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 72406 72406 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C5%2C20%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C3.6e-07%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold227 SAMTools SNP 72654 72654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 73946 73946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold227 SAMTools SNP 73955 73955 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold227 SAMTools SNP 73979 73979 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold227 SAMTools SNP 74393 74393 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.52%2C0.33%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold227 SAMTools SNP 74783 74783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C11%2C99%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 79870 79870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 92493 92493 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold227 SAMTools SNP 92612 92612 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C27%2C0:51 scaffold227 SAMTools SNP 92678 92678 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold227 SAMTools SNP 93372 93372 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C175:72 scaffold227 SAMTools SNP 93387 93387 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D9.36%3BPV4%3D0.25%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C37:39 scaffold227 SAMTools SNP 93656 93656 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold227 SAMTools SNP 93683 93683 88 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold227 SAMTools SNP 94507 94507 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 94567 94567 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold227 SAMTools SNP 94687 94687 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 94712 94712 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 95267 95267 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold227 SAMTools SNP 95674 95674 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold227 SAMTools SNP 96747 96747 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold227 SAMTools SNP 96826 96826 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.019%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold227 SAMTools SNP 97148 97148 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold227 SAMTools SNP 97184 97184 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold227 SAMTools SNP 97275 97275 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold227 SAMTools SNP 97499 97499 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold227 SAMTools SNP 98175 98175 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.43%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C155:99 scaffold227 SAMTools SNP 98971 98971 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.13%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold227 SAMTools SNP 99002 99002 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold227 SAMTools SNP 100250 100250 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold227 SAMTools SNP 102791 102791 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 106037 106037 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C54%2C1%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 106042 106042 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C45%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.13%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 106542 106542 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C58%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 108356 108356 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C42%2C0:81 scaffold227 SAMTools SNP 108408 108408 83.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold227 SAMTools SNP 111140 111140 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold227 SAMTools SNP 116683 116683 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.5%2C3.2e-42%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C238:99 scaffold227 SAMTools SNP 116815 116815 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C3%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold227 SAMTools SNP 116824 116824 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold227 SAMTools SNP 117214 117214 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold227 SAMTools SNP 117780 117780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 117949 117949 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D49%3BFQ%3D174%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C212:99 scaffold227 SAMTools SNP 118058 118058 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold227 SAMTools SNP 118074 118074 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold227 SAMTools SNP 118311 118311 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 118341 118341 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 118540 118540 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 118574 118574 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 118646 118646 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C33%2C0:63 scaffold227 SAMTools SNP 118725 118725 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold227 SAMTools SNP 119197 119197 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C79%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold227 SAMTools SNP 121316 121316 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C62%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold227 SAMTools SNP 121381 121381 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold227 SAMTools SNP 124418 124418 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold227 SAMTools SNP 145052 145052 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold227 SAMTools SNP 145492 145492 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold227 SAMTools SNP 145607 145607 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C10%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.15%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold227 SAMTools SNP 146316 146316 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold227 SAMTools SNP 146370 146370 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold227 SAMTools SNP 148628 148628 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C42%2C0:80 scaffold227 SAMTools SNP 148971 148971 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.5e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C136:37 scaffold227 SAMTools SNP 149399 149399 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C60%2C0:99 scaffold227 SAMTools SNP 149496 149496 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold227 SAMTools SNP 150095 150095 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold227 SAMTools SNP 150520 150520 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.096%2C0.14%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold227 SAMTools SNP 150540 150540 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.52%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold227 SAMTools SNP 150695 150695 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.53%2C0.044%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold227 SAMTools SNP 150703 150703 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.38%2C0.047%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C240:56 scaffold227 SAMTools SNP 150728 150728 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C229:40 scaffold227 SAMTools SNP 151629 151629 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.19%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold227 SAMTools SNP 151664 151664 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 159654 159654 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold227 SAMTools SNP 159657 159657 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold227 SAMTools SNP 160220 160220 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold227 SAMTools SNP 160355 160355 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 160367 160367 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 160760 160760 28.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold227 SAMTools SNP 160838 160838 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.067%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold227 SAMTools SNP 161341 161341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold227 SAMTools SNP 161425 161425 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.1e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold227 SAMTools SNP 166663 166663 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 167014 167014 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold227 SAMTools SNP 167091 167091 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold227 SAMTools SNP 167846 167846 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.16%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold227 SAMTools SNP 167849 167849 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.094%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold227 SAMTools SNP 167870 167870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold227 SAMTools SNP 167879 167879 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold227 SAMTools SNP 167918 167918 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C7%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.0031%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold227 SAMTools SNP 168089 168089 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold227 SAMTools SNP 168177 168177 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C106:99 scaffold227 SAMTools SNP 168800 168800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold227 SAMTools SNP 168809 168809 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold227 SAMTools SNP 168941 168941 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 169212 169212 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 169260 169260 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 169518 169518 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 169534 169534 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 169568 169568 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold227 SAMTools SNP 170019 170019 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 170049 170049 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 170061 170061 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 170308 170308 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 170567 170567 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold227 SAMTools SNP 170613 170613 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold227 SAMTools SNP 170920 170920 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold227 SAMTools SNP 170974 170974 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold227 SAMTools SNP 171590 171590 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold227 SAMTools SNP 171611 171611 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold227 SAMTools SNP 171983 171983 13.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold227 SAMTools SNP 172052 172052 78.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold227 SAMTools SNP 172145 172145 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold227 SAMTools SNP 172899 172899 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold227 SAMTools SNP 179156 179156 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 179909 179909 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 180449 180449 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.028%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold227 SAMTools SNP 180824 180824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold227 SAMTools SNP 182164 182164 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold227 SAMTools SNP 182224 182224 77 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C14%2C5%2C106%2C0%2C103:16 scaffold227 SAMTools SNP 182272 182272 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold227 SAMTools SNP 182311 182311 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold227 SAMTools SNP 182692 182692 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold227 SAMTools SNP 182704 182704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold227 SAMTools SNP 183055 183055 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 183516 183516 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C105%2C0:99 scaffold227 SAMTools SNP 183603 183603 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold227 SAMTools SNP 183915 183915 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C15%2C2%3BMQ%3D49%3BFQ%3D91%3BPV4%3D0.028%2C0.41%2C0.32%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold227 SAMTools SNP 184610 184610 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C8%3BMQ%3D40%3BFQ%3D82.9%3BPV4%3D1%2C0.2%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C110:99 scaffold227 SAMTools SNP 184641 184641 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C7%3BMQ%3D45%3BFQ%3D7.8%3BPV4%3D0.12%2C1.1e-09%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold227 SAMTools SNP 185217 185217 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 185309 185309 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C17%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold227 SAMTools SNP 185371 185371 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C17%2C50%3BMQ%3D50%3BFQ%3D48%3BPV4%3D7.7e-06%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold227 SAMTools SNP 185470 185470 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold227 SAMTools SNP 185953 185953 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold227 SAMTools SNP 186800 186800 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.035%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold227 SAMTools SNP 186845 186845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold227 SAMTools SNP 186902 186902 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C63%2C0:99 scaffold227 SAMTools SNP 186932 186932 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C57%2C0:99 scaffold227 SAMTools SNP 187306 187306 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 187581 187581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C40%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold227 SAMTools SNP 187894 187894 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C222:99 scaffold227 SAMTools SNP 188597 188597 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.0082%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold227 SAMTools SNP 189020 189020 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C10%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold227 SAMTools SNP 189041 189041 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C253:99 scaffold227 SAMTools SNP 189680 189680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 189925 189925 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 190218 190218 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C12%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.42%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C239:99 scaffold227 SAMTools SNP 190544 190544 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 193622 193622 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C0.17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C112:99 scaffold227 SAMTools SNP 198056 198056 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold227 SAMTools SNP 198118 198118 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.12%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 201028 201028 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold227 SAMTools SNP 204305 204305 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D32%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.038%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C116:41 scaffold227 SAMTools SNP 205350 205350 9.63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D21%3BFQ%3D-28%3BPV4%3D1%2C0.097%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold227 SAMTools SNP 209313 209313 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold227 SAMTools SNP 212581 212581 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold227 SAMTools SNP 223078 223078 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 234367 234367 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold227 SAMTools SNP 242324 242324 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold227 SAMTools SNP 244711 244711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C46%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold227 SAMTools SNP 246455 246455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C11%3BMQ%3D37%3BFQ%3D178%3BPV4%3D0.092%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C205:99 scaffold227 SAMTools SNP 252413 252413 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C7%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.17%2C1.4e-32%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold227 SAMTools SNP 258028 258028 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold227 SAMTools SNP 258196 258196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold227 SAMTools SNP 258591 258591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 259042 259042 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.23%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold227 SAMTools SNP 259144 259144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C60%2C13%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 259500 259500 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C4%2C4%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold227 SAMTools SNP 260291 260291 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C45%2C0:87 scaffold227 SAMTools SNP 325320 325320 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.47%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C69:72 scaffold227 SAMTools SNP 325611 325611 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold227 SAMTools SNP 325915 325915 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold227 SAMTools SNP 327975 327975 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold227 SAMTools SNP 328507 328507 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold227 SAMTools SNP 330282 330282 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold227 SAMTools SNP 330454 330454 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold227 SAMTools SNP 330989 330989 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold227 SAMTools SNP 346338 346338 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold227 SAMTools SNP 348637 348637 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold227 SAMTools SNP 348660 348660 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold227 SAMTools SNP 366539 366539 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 368233 368233 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D88.6%3BPV4%3D0.13%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C126:99 scaffold227 SAMTools SNP 368314 368314 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C18%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.38%2C5.1e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold227 SAMTools SNP 368474 368474 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C120%2C0:99 scaffold227 SAMTools SNP 368678 368678 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C132%2C0:99 scaffold227 SAMTools SNP 369121 369121 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 369596 369596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C79%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold227 SAMTools SNP 371666 371666 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold227 SAMTools SNP 371685 371685 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold227 SAMTools SNP 374190 374190 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C16%2C28%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.01%2C6.9e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold227 SAMTools SNP 374424 374424 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C29%2C19%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0013%2C4.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold227 SAMTools SNP 374733 374733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold227 SAMTools SNP 374769 374769 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.011%2C0.41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold227 SAMTools SNP 375084 375084 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold227 SAMTools SNP 375775 375775 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C0%2C13%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.025%2C4.6e-11%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold227 SAMTools SNP 376187 376187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold227 SAMTools SNP 376247 376247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C8%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.096%2C0.4%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold227 SAMTools SNP 376677 376677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold227 SAMTools SNP 376758 376758 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C35:38 scaffold227 SAMTools SNP 376804 376804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold227 SAMTools SNP 377055 377055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold227 SAMTools SNP 377166 377166 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold227 SAMTools SNP 377679 377679 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold227 SAMTools SNP 377697 377697 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold227 SAMTools SNP 378078 378078 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C6%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold227 SAMTools SNP 378364 378364 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 378814 378814 34.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C7%2C72%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C17%2C0:31 scaffold227 SAMTools SNP 378877 378877 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C17%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00011%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold227 SAMTools SNP 379062 379062 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C37%2C36%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1.3e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold227 SAMTools SNP 379534 379534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 380062 380062 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 380077 380077 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 381329 381329 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 381338 381338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 381388 381388 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 381409 381409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C24%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 381665 381665 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C2%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.044%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C238:99 scaffold227 SAMTools SNP 382849 382849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold227 SAMTools SNP 382870 382870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold227 SAMTools SNP 382879 382879 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold227 SAMTools SNP 383547 383547 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold227 SAMTools SNP 383562 383562 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold227 SAMTools SNP 388498 388498 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C126%2C0:99 scaffold227 SAMTools SNP 389317 389317 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold227 SAMTools SNP 389494 389494 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C239:44 scaffold227 SAMTools SNP 389593 389593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold227 SAMTools SNP 389617 389617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold227 SAMTools SNP 389843 389843 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C51%2C0%2C18%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold227 SAMTools SNP 389850 389850 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C0%2C18%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold227 SAMTools SNP 390840 390840 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C90%2C0:99 scaffold227 SAMTools SNP 391163 391163 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 391372 391372 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold227 SAMTools SNP 398089 398089 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C239:99 scaffold227 SAMTools SNP 398090 398090 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C239:99 scaffold227 SAMTools SNP 399888 399888 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 403109 403109 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 403722 403722 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold227 SAMTools SNP 403764 403764 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold227 SAMTools SNP 403836 403836 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold227 SAMTools SNP 404753 404753 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold227 SAMTools SNP 404768 404768 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold227 SAMTools SNP 404807 404807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold227 SAMTools SNP 404819 404819 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C18%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.064%2C0.18%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold227 SAMTools SNP 405123 405123 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold227 SAMTools SNP 405565 405565 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold227 SAMTools SNP 407068 407068 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C0.16%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C226:99 scaffold227 SAMTools SNP 407647 407647 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold227 SAMTools SNP 410914 410914 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold227 SAMTools SNP 413437 413437 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.052%2C1.8e-07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold227 SAMTools SNP 413836 413836 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold227 SAMTools SNP 414247 414247 51 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C21%2C33%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.78%2C2.8e-36%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold227 SAMTools SNP 414764 414764 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C17%2C10%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.019%2C1.4e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold227 SAMTools SNP 414812 414812 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C6%2C45%2C7%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.37%2C1e-81%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold227 SAMTools SNP 414929 414929 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C255%2C0:99 scaffold227 SAMTools SNP 415214 415214 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold227 SAMTools SNP 415340 415340 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C17%2C37%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.43%2C2.9e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold227 SAMTools SNP 415430 415430 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C20%2C56%2C25%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.6%2C3.5e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold227 SAMTools SNP 415733 415733 80.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold227 SAMTools SNP 415754 415754 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5e-06%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C251:52 scaffold227 SAMTools SNP 415892 415892 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.45%2C8.8e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold227 SAMTools SNP 415991 415991 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C12%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.48%2C1.7e-08%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C31%2C0:59 scaffold227 SAMTools SNP 418949 418949 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold227 SAMTools SNP 421932 421932 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold227 SAMTools SNP 421941 421941 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold227 SAMTools SNP 426237 426237 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 430027 430027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold227 SAMTools SNP 431917 431917 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold227 SAMTools SNP 435013 435013 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.3%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold227 SAMTools SNP 440621 440621 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold230 SAMTools SNP 10030 10030 21.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold230 SAMTools SNP 10065 10065 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold230 SAMTools SNP 13602 13602 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold230 SAMTools SNP 13864 13864 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold230 SAMTools SNP 20768 20768 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold230 SAMTools SNP 23746 23746 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold230 SAMTools SNP 23785 23785 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold230 SAMTools SNP 24389 24389 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.27%2C0.036%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold230 SAMTools SNP 27833 27833 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C21%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.64%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold230 SAMTools SNP 27929 27929 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold230 SAMTools SNP 27932 27932 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold230 SAMTools SNP 30774 30774 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold230 SAMTools SNP 32769 32769 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold230 SAMTools SNP 32799 32799 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold230 SAMTools SNP 33731 33731 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.7e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold230 SAMTools SNP 38060 38060 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold230 SAMTools SNP 41076 41076 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold230 SAMTools SNP 42601 42601 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold230 SAMTools SNP 48913 48913 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C0.034%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold230 SAMTools SNP 49800 49800 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.062%2C0.0021%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold230 SAMTools SNP 51854 51854 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.048%2C0.039%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C156:90 scaffold230 SAMTools SNP 52164 52164 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold230 SAMTools SNP 53539 53539 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold230 SAMTools SNP 53961 53961 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66.9%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C110:97 scaffold230 SAMTools SNP 64998 64998 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold230 SAMTools SNP 107292 107292 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold230 SAMTools SNP 111700 111700 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold230 SAMTools SNP 112579 112579 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold230 SAMTools SNP 139505 139505 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold230 SAMTools SNP 139510 139510 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold230 SAMTools SNP 139866 139866 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C218:99 scaffold230 SAMTools SNP 141098 141098 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold230 SAMTools SNP 142108 142108 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C90%2C0:99 scaffold230 SAMTools SNP 142762 142762 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.14%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold230 SAMTools SNP 142786 142786 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C14%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold230 SAMTools SNP 180144 180144 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold230 SAMTools SNP 180195 180195 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold230 SAMTools SNP 227617 227617 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold230 SAMTools SNP 227624 227624 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold230 SAMTools SNP 228023 228023 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold230 SAMTools SNP 228058 228058 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-55;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C139%2C111:53 scaffold230 SAMTools SNP 228612 228612 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold230 SAMTools SNP 229790 229790 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold230 SAMTools SNP 229832 229832 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold230 SAMTools SNP 232437 232437 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold230 SAMTools SNP 232488 232488 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C247:99 scaffold230 SAMTools SNP 233812 233812 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.22%2C0.00014%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold230 SAMTools SNP 234130 234130 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold230 SAMTools SNP 234160 234160 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold230 SAMTools SNP 235119 235119 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold230 SAMTools SNP 238773 238773 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold230 SAMTools SNP 239521 239521 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold230 SAMTools SNP 242448 242448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold230 SAMTools SNP 278791 278791 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold230 SAMTools SNP 278806 278806 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold232 SAMTools SNP 4642 4642 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold232 SAMTools SNP 5234 5234 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold232 SAMTools SNP 7986 7986 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.35%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold232 SAMTools SNP 7987 7987 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.32%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold232 SAMTools SNP 11444 11444 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C112:37 scaffold232 SAMTools SNP 11799 11799 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold232 SAMTools SNP 15406 15406 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C32:35 scaffold232 SAMTools SNP 17183 17183 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold232 SAMTools SNP 18016 18016 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold232 SAMTools SNP 18046 18046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C8%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold232 SAMTools SNP 18056 18056 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C9.3e-09%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold232 SAMTools SNP 18181 18181 26.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold232 SAMTools SNP 56528 56528 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold232 SAMTools SNP 56586 56586 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold236 SAMTools SNP 455 455 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C249:99 scaffold236 SAMTools SNP 2192 2192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 2647 2647 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.062%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold236 SAMTools SNP 2976 2976 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 2996 2996 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 3994 3994 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold236 SAMTools SNP 4030 4030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold236 SAMTools SNP 4481 4481 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold236 SAMTools SNP 4484 4484 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold236 SAMTools SNP 5501 5501 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 5510 5510 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 5561 5561 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold236 SAMTools SNP 5564 5564 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold236 SAMTools SNP 5880 5880 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold236 SAMTools SNP 5901 5901 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold236 SAMTools SNP 5970 5970 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold236 SAMTools SNP 7387 7387 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 7391 7391 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold236 SAMTools SNP 7590 7590 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold236 SAMTools SNP 8042 8042 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C212:99 scaffold236 SAMTools SNP 8352 8352 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold236 SAMTools SNP 8581 8581 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold236 SAMTools SNP 8582 8582 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold236 SAMTools SNP 8611 8611 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 8652 8652 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold236 SAMTools SNP 9147 9147 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 9148 9148 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 9227 9227 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold236 SAMTools SNP 9266 9266 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C148:99 scaffold236 SAMTools SNP 11239 11239 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold236 SAMTools SNP 11252 11252 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold236 SAMTools SNP 11647 11647 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold236 SAMTools SNP 12108 12108 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 12119 12119 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 15744 15744 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold236 SAMTools SNP 15847 15847 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C4e-17%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C236:99 scaffold236 SAMTools SNP 16818 16818 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold236 SAMTools SNP 18006 18006 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 19421 19421 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold236 SAMTools SNP 19527 19527 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold236 SAMTools SNP 25699 25699 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 25737 25737 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold236 SAMTools SNP 26627 26627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold236 SAMTools SNP 26654 26654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold236 SAMTools SNP 26675 26675 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold236 SAMTools SNP 26898 26898 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold236 SAMTools SNP 27989 27989 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C75%2C0:99 scaffold236 SAMTools SNP 28081 28081 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C11%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.13%2C2.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold236 SAMTools SNP 41956 41956 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold236 SAMTools SNP 42060 42060 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 42217 42217 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C55%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 42370 42370 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 42589 42589 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 42796 42796 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold236 SAMTools SNP 42884 42884 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold236 SAMTools SNP 42907 42907 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C187:99 scaffold236 SAMTools SNP 44033 44033 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold236 SAMTools SNP 44115 44115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.28%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 44238 44238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 44294 44294 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold236 SAMTools SNP 45444 45444 4.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold236 SAMTools SNP 45516 45516 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold236 SAMTools SNP 45630 45630 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold236 SAMTools SNP 45656 45656 46.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold236 SAMTools SNP 85045 85045 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.027%2C0.022%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C210:99 scaffold236 SAMTools SNP 85098 85098 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold236 SAMTools SNP 93507 93507 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 93536 93536 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 93544 93544 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold236 SAMTools SNP 93547 93547 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold236 SAMTools SNP 98306 98306 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 105123 105123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 105145 105145 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold236 SAMTools SNP 118474 118474 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold236 SAMTools SNP 119769 119769 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C186:30 scaffold236 SAMTools SNP 123277 123277 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold236 SAMTools SNP 124166 124166 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.027%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold236 SAMTools SNP 163113 163113 41.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold236 SAMTools SNP 163315 163315 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold236 SAMTools SNP 163349 163349 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.14%2C0.00025%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold236 SAMTools SNP 166304 166304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 166307 166307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 167079 167079 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C18%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold236 SAMTools SNP 173101 173101 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.088%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold236 SAMTools SNP 191256 191256 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C171:37 scaffold236 SAMTools SNP 191343 191343 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C6.6e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C171:99 scaffold236 SAMTools SNP 196924 196924 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C33%2C0:63 scaffold236 SAMTools SNP 197932 197932 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold236 SAMTools SNP 198211 198211 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold236 SAMTools SNP 198228 198228 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold236 SAMTools SNP 227773 227773 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1.1e-10%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C164:82 scaffold236 SAMTools SNP 228146 228146 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C32%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold236 SAMTools SNP 228535 228535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C25%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold236 SAMTools SNP 228749 228749 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 229000 229000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.14%2C0.14%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold236 SAMTools SNP 229015 229015 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C197:99 scaffold236 SAMTools SNP 230259 230259 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.18%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 230381 230381 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C10%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.19%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold236 SAMTools SNP 231468 231468 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 231699 231699 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C43%2C3%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.074%2C2.2e-05%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold236 SAMTools SNP 236882 236882 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold236 SAMTools SNP 236884 236884 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.4%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold236 SAMTools SNP 237409 237409 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold236 SAMTools SNP 237952 237952 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold236 SAMTools SNP 238459 238459 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C51%2C0:99 scaffold236 SAMTools SNP 239029 239029 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold236 SAMTools SNP 239533 239533 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold236 SAMTools SNP 239638 239638 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold236 SAMTools SNP 239760 239760 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold236 SAMTools SNP 240862 240862 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold236 SAMTools SNP 240890 240890 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C30%2C0:57 scaffold236 SAMTools SNP 247441 247441 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.16%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C244:99 scaffold236 SAMTools SNP 247450 247450 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold236 SAMTools SNP 247554 247554 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6.8e-22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C217:28 scaffold236 SAMTools SNP 262595 262595 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 264205 264205 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.41%2C7.2e-24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold236 SAMTools SNP 264560 264560 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold236 SAMTools SNP 264825 264825 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C140:99 scaffold236 SAMTools SNP 264828 264828 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C136:47 scaffold236 SAMTools SNP 265250 265250 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold236 SAMTools SNP 265509 265509 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold236 SAMTools SNP 265737 265737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold236 SAMTools SNP 267318 267318 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold236 SAMTools SNP 267329 267329 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold236 SAMTools SNP 267441 267441 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold236 SAMTools SNP 268657 268657 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold236 SAMTools SNP 269017 269017 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold236 SAMTools SNP 269074 269074 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 269110 269110 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 269914 269914 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 270413 270413 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold236 SAMTools SNP 270437 270437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold236 SAMTools SNP 271604 271604 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 271724 271724 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold236 SAMTools SNP 276143 276143 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold236 SAMTools SNP 276150 276150 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold236 SAMTools SNP 281161 281161 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold236 SAMTools SNP 285441 285441 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold236 SAMTools SNP 287368 287368 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 287435 287435 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 287732 287732 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 287750 287750 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold236 SAMTools SNP 288139 288139 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold236 SAMTools SNP 288456 288456 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C150:99 scaffold236 SAMTools SNP 288470 288470 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold236 SAMTools SNP 290169 290169 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 290217 290217 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold236 SAMTools SNP 291171 291171 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D47%3BFQ%3D43%3BPV4%3D0.52%2C1%2C0.085%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C212:73 scaffold236 SAMTools SNP 291204 291204 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold236 SAMTools SNP 292184 292184 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold236 SAMTools SNP 294485 294485 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold236 SAMTools SNP 294862 294862 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C7%3BMQ%3D44%3BFQ%3D150%3BPV4%3D0.65%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold236 SAMTools SNP 294877 294877 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D45%3BFQ%3D72%3BPV4%3D0.47%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C192:99 scaffold236 SAMTools SNP 295198 295198 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold236 SAMTools SNP 295604 295604 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C228:69 scaffold236 SAMTools SNP 295646 295646 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C15%2C0:27 scaffold236 SAMTools SNP 295896 295896 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold236 SAMTools SNP 295926 295926 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 296108 296108 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 296198 296198 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold236 SAMTools SNP 296507 296507 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold236 SAMTools SNP 296946 296946 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold236 SAMTools SNP 296955 296955 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold236 SAMTools SNP 298894 298894 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold236 SAMTools SNP 299439 299439 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold236 SAMTools SNP 299505 299505 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C164:99 scaffold236 SAMTools SNP 299774 299774 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold236 SAMTools SNP 300835 300835 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C35:38 scaffold236 SAMTools SNP 300853 300853 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold236 SAMTools SNP 301514 301514 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 301533 301533 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 301820 301820 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold236 SAMTools SNP 304447 304447 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold236 SAMTools SNP 305160 305160 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.52%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C182:41 scaffold236 SAMTools SNP 305406 305406 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold236 SAMTools SNP 305506 305506 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D5.73%3BPV4%3D0.33%2C5.1e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C32:35 scaffold236 SAMTools SNP 305555 305555 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C57%2C0:99 scaffold236 SAMTools SNP 305799 305799 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.49%2C5.3e-18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C178:88 scaffold236 SAMTools SNP 348534 348534 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold236 SAMTools SNP 348646 348646 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 354690 354690 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C20%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C3.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold236 SAMTools SNP 355303 355303 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C112:31 scaffold236 SAMTools SNP 357684 357684 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold236 SAMTools SNP 363035 363035 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold236 SAMTools SNP 364490 364490 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.061%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold236 SAMTools SNP 369322 369322 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold236 SAMTools SNP 370174 370174 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C103:99 scaffold236 SAMTools SNP 370188 370188 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold236 SAMTools SNP 418958 418958 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C18%2C0:33 scaffold236 SAMTools SNP 419003 419003 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D42%3BFQ%3D23%3BPV4%3D0.43%2C0.021%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C118:53 scaffold236 SAMTools SNP 419336 419336 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C27%2C0:51 scaffold236 SAMTools SNP 419445 419445 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D26%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C45%2C0:87 scaffold236 SAMTools SNP 419590 419590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D37%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold236 SAMTools SNP 419766 419766 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold236 SAMTools SNP 419875 419875 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold236 SAMTools SNP 427235 427235 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C28%2C7%3BMQ%3D40%3BFQ%3D-85%3BPV4%3D0.22%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C58%2C0:99 scaffold236 SAMTools SNP 427707 427707 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.23%2C0.33%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold236 SAMTools SNP 427832 427832 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 428123 428123 9.93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold236 SAMTools SNP 428165 428165 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D0.46%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C109:31 scaffold236 SAMTools SNP 428434 428434 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold236 SAMTools SNP 428440 428440 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D41%3BFQ%3D-37%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C10%2C0:17 scaffold236 SAMTools SNP 430942 430942 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C0%3BMQ%3D28%3BFQ%3D3.02%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C27:30 scaffold236 SAMTools SNP 431339 431339 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C0%3BMQ%3D37%3BFQ%3D14.2%3BPV4%3D1%2C0.073%2C4.3e-08%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C223:43 scaffold236 SAMTools SNP 431725 431725 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C31%3BMQ%3D49%3BFQ%3D165%3BPV4%3D0.062%2C0.0082%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold236 SAMTools SNP 431746 431746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C31%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold236 SAMTools SNP 431793 431793 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C72%2C0:99 scaffold236 SAMTools SNP 432003 432003 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D49%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold236 SAMTools SNP 432516 432516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold236 SAMTools SNP 432554 432554 19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold236 SAMTools SNP 434201 434201 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C181%2C0:99 scaffold236 SAMTools SNP 434617 434617 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C13%2C10%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C0.0017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold236 SAMTools SNP 434659 434659 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C77%2C26%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0058%2C0.46%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold236 SAMTools SNP 435102 435102 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold236 SAMTools SNP 435378 435378 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold236 SAMTools SNP 435430 435430 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D12%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C57%2C0:66 scaffold236 SAMTools SNP 436158 436158 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C1%2C57%2C1%3BMQ%3D45%3BFQ%3D-32%3BPV4%3D0.18%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C5%2C0:9 scaffold236 SAMTools SNP 436251 436251 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D48%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold236 SAMTools SNP 436986 436986 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C24%2C53%3BMQ%3D33%3BFQ%3D216%3BPV4%3D0.0033%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold236 SAMTools SNP 437010 437010 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C46%2C15%2C6%3BMQ%3D39%3BFQ%3D211%3BPV4%3D0.00085%2C0.0028%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold236 SAMTools SNP 438042 438042 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold236 SAMTools SNP 439394 439394 12.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold236 SAMTools SNP 440334 440334 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold236 SAMTools SNP 458935 458935 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold236 SAMTools SNP 461287 461287 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold236 SAMTools SNP 461347 461347 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold236 SAMTools SNP 461883 461883 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold236 SAMTools SNP 489748 489748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold236 SAMTools SNP 489774 489774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold236 SAMTools SNP 489861 489861 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C45%2C0:70 scaffold236 SAMTools SNP 489874 489874 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C45%2C0:86 scaffold236 SAMTools SNP 527527 527527 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 80250 80250 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold237 SAMTools SNP 94267 94267 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 95132 95132 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold237 SAMTools SNP 95157 95157 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 98396 98396 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold237 SAMTools SNP 98406 98406 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold237 SAMTools SNP 99630 99630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold237 SAMTools SNP 99663 99663 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold237 SAMTools SNP 101039 101039 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold237 SAMTools SNP 101096 101096 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 103939 103939 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 119017 119017 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 123041 123041 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C24%2C14%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.2e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold237 SAMTools SNP 123413 123413 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold237 SAMTools SNP 124089 124089 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C134:39 scaffold237 SAMTools SNP 124224 124224 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C66%2C42%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 125484 125484 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C118%2C16%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 125843 125843 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C328%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold237 SAMTools SNP 126484 126484 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 127174 127174 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold237 SAMTools SNP 127598 127598 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C5%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 130069 130069 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C76%2C53%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C6.8e-75%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 130914 130914 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C17%2C189%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 150362 150362 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0050%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.11%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold237 SAMTools SNP 150829 150829 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C253:73 scaffold237 SAMTools SNP 151459 151459 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C8:11 scaffold237 SAMTools SNP 151601 151601 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.093%2C1.1e-12%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C101:64 scaffold237 SAMTools SNP 152181 152181 47.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold237 SAMTools SNP 153187 153187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C53%2C48%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 154494 154494 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.44%2C3.4e-11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C156:43 scaffold237 SAMTools SNP 157648 157648 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C63%2C0:99 scaffold237 SAMTools SNP 160577 160577 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0076%2C0.00015%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold237 SAMTools SNP 160720 160720 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C16%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0097%2C2.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C163:99 scaffold237 SAMTools SNP 160858 160858 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1%2C17%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.11%2C0.00034%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C252:99 scaffold237 SAMTools SNP 162233 162233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold237 SAMTools SNP 163857 163857 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C20%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.00097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold237 SAMTools SNP 163869 163869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.23%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold237 SAMTools SNP 164107 164107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C5%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C0.089%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 164116 164116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 164752 164752 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C22%2C3%2C0%3BMQ%3D49%3BFQ%3D8.65%3BPV4%3D0.024%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold237 SAMTools SNP 164758 164758 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C22%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.024%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold237 SAMTools SNP 164770 164770 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold237 SAMTools SNP 164791 164791 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C17%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.2e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 165186 165186 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold237 SAMTools SNP 165726 165726 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.55%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold237 SAMTools SNP 165829 165829 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold237 SAMTools SNP 166117 166117 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C40%2C0%2C14%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0034%2C0.25%2C1%2C3.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold237 SAMTools SNP 166500 166500 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C43%2C1%2C19%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold237 SAMTools SNP 167160 167160 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 167727 167727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C18%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 168460 168460 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C39%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 168683 168683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold237 SAMTools SNP 169041 169041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold237 SAMTools SNP 169065 169065 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C45%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold237 SAMTools SNP 169113 169113 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C99%2C0:99 scaffold237 SAMTools SNP 169393 169393 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold237 SAMTools SNP 169402 169402 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold237 SAMTools SNP 169423 169423 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C24%2C0:45 scaffold237 SAMTools SNP 169462 169462 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold237 SAMTools SNP 170083 170083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold237 SAMTools SNP 171388 171388 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 182219 182219 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold237 SAMTools SNP 182324 182324 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.1%2C0.00039%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C77:30 scaffold237 SAMTools SNP 183685 183685 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold237 SAMTools SNP 183721 183721 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C93%2C0:99 scaffold237 SAMTools SNP 184078 184078 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C24%2C0:45 scaffold237 SAMTools SNP 184651 184651 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold237 SAMTools SNP 185254 185254 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C33%2C0:63 scaffold237 SAMTools SNP 185263 185263 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0049%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C76:79 scaffold237 SAMTools SNP 185451 185451 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold237 SAMTools SNP 186749 186749 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold237 SAMTools SNP 187439 187439 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 187537 187537 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.0087%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold237 SAMTools SNP 187567 187567 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold237 SAMTools SNP 187831 187831 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 188122 188122 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 189058 189058 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold237 SAMTools SNP 189076 189076 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold237 SAMTools SNP 189149 189149 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold237 SAMTools SNP 189172 189172 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold237 SAMTools SNP 189364 189364 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold237 SAMTools SNP 192907 192907 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold237 SAMTools SNP 205524 205524 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.063%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold237 SAMTools SNP 205526 205526 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.21%2C0.06%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold237 SAMTools SNP 208630 208630 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold237 SAMTools SNP 208723 208723 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 209270 209270 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 209849 209849 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold237 SAMTools SNP 209861 209861 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.083%2C0.17%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C218:54 scaffold237 SAMTools SNP 210034 210034 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.039%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold237 SAMTools SNP 210059 210059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 211965 211965 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C22%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.42%2C0.039%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold237 SAMTools SNP 212005 212005 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.31%2C0.12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold237 SAMTools SNP 212047 212047 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold237 SAMTools SNP 213112 213112 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.26%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C29:32 scaffold237 SAMTools SNP 213176 213176 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C18:21 scaffold237 SAMTools SNP 213230 213230 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold237 SAMTools SNP 213886 213886 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold237 SAMTools SNP 213922 213922 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold237 SAMTools SNP 214489 214489 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold237 SAMTools SNP 214518 214518 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 214537 214537 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold237 SAMTools SNP 214557 214557 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold237 SAMTools SNP 215885 215885 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C240:68 scaffold237 SAMTools SNP 215940 215940 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.088%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold237 SAMTools SNP 216680 216680 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold237 SAMTools SNP 216712 216712 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 224033 224033 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C250:60 scaffold237 SAMTools SNP 224459 224459 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold237 SAMTools SNP 226030 226030 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold237 SAMTools SNP 226069 226069 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold237 SAMTools SNP 227268 227268 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold237 SAMTools SNP 229601 229601 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold237 SAMTools SNP 229616 229616 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold237 SAMTools SNP 229618 229618 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold237 SAMTools SNP 229827 229827 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 229863 229863 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold237 SAMTools SNP 232646 232646 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D0.1%2C0.25%2C0.058%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C110:42 scaffold237 SAMTools SNP 234896 234896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold237 SAMTools SNP 235707 235707 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold237 SAMTools SNP 235758 235758 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold237 SAMTools SNP 235795 235795 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 236541 236541 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold237 SAMTools SNP 236857 236857 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 237039 237039 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold237 SAMTools SNP 237042 237042 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.2%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold237 SAMTools SNP 237065 237065 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold237 SAMTools SNP 238483 238483 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold237 SAMTools SNP 239666 239666 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold237 SAMTools SNP 239672 239672 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold237 SAMTools SNP 246036 246036 44.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold237 SAMTools SNP 246430 246430 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold237 SAMTools SNP 256319 256319 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold237 SAMTools SNP 256333 256333 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold237 SAMTools SNP 256345 256345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold237 SAMTools SNP 261181 261181 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold237 SAMTools SNP 278175 278175 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold237 SAMTools SNP 279440 279440 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold237 SAMTools SNP 279465 279465 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold237 SAMTools SNP 279772 279772 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold237 SAMTools SNP 279850 279850 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold237 SAMTools SNP 280750 280750 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold237 SAMTools SNP 283357 283357 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold237 SAMTools SNP 283759 283759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold237 SAMTools SNP 284314 284314 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold237 SAMTools SNP 290356 290356 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.088%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C146:65 scaffold237 SAMTools SNP 290743 290743 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold237 SAMTools SNP 291321 291321 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.23%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C137:99 scaffold237 SAMTools SNP 295560 295560 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold237 SAMTools SNP 298408 298408 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C12%2C13%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.15%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold237 SAMTools SNP 298655 298655 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C2.7e-05%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C35:38 scaffold237 SAMTools SNP 298808 298808 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.49%2C6.5e-15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C127:64 scaffold237 SAMTools SNP 303915 303915 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 308135 308135 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold237 SAMTools SNP 308424 308424 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold237 SAMTools SNP 310238 310238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C54%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 310286 310286 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold237 SAMTools SNP 311207 311207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C24%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.035%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 311264 311264 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C5%2C0%3BMQ%3D49%3BFQ%3D21%3BPV4%3D0.049%2C1%2C0.0025%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold237 SAMTools SNP 311267 311267 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C5%2C0%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.049%2C0.42%2C0.0032%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold237 SAMTools SNP 311279 311279 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold237 SAMTools SNP 327269 327269 7.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold237 SAMTools SNP 337143 337143 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold237 SAMTools SNP 430928 430928 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold237 SAMTools SNP 431217 431217 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C15%2C0:27 scaffold237 SAMTools SNP 431696 431696 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold237 SAMTools SNP 437414 437414 6.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D1%2C0.0022%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C4%2C0:5 scaffold237 SAMTools SNP 454661 454661 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 454689 454689 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 455113 455113 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 466250 466250 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold237 SAMTools SNP 472199 472199 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold237 SAMTools SNP 472241 472241 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold237 SAMTools SNP 472255 472255 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold237 SAMTools SNP 477560 477560 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C124:99 scaffold237 SAMTools SNP 477590 477590 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold237 SAMTools SNP 478633 478633 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold237 SAMTools SNP 478666 478666 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold237 SAMTools SNP 548911 548911 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C131%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0021%2C0.017%2C0.1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 550596 550596 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold237 SAMTools SNP 613210 613210 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold237 SAMTools SNP 614375 614375 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 614398 614398 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 616889 616889 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C230:40 scaffold237 SAMTools SNP 618156 618156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold237 SAMTools SNP 618169 618169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold237 SAMTools SNP 618216 618216 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C77%2C0:99 scaffold237 SAMTools SNP 622505 622505 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 630099 630099 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold237 SAMTools SNP 631459 631459 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C99:49 scaffold237 SAMTools SNP 631478 631478 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.014%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold237 SAMTools SNP 639224 639224 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold237 SAMTools SNP 642291 642291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C21%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.012%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 642916 642916 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 642936 642936 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.049%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 645647 645647 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold237 SAMTools SNP 646009 646009 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C0%2C37%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.027%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold237 SAMTools SNP 646033 646033 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C26%3BMQ%3D49%3BFQ%3D220%3BPV4%3D0.19%2C1%2C0.19%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold237 SAMTools SNP 646799 646799 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 646839 646839 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold237 SAMTools SNP 650089 650089 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.12%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C235:99 scaffold237 SAMTools SNP 650363 650363 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C38%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.5%2C0.22%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold237 SAMTools SNP 654303 654303 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold237 SAMTools SNP 654304 654304 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold237 SAMTools SNP 656808 656808 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C112:56 scaffold237 SAMTools SNP 658529 658529 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 663946 663946 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold237 SAMTools SNP 663960 663960 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold237 SAMTools SNP 669438 669438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 670243 670243 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 670352 670352 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold237 SAMTools SNP 671324 671324 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 671610 671610 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold237 SAMTools SNP 671667 671667 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 673616 673616 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 673634 673634 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold237 SAMTools SNP 674304 674304 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold237 SAMTools SNP 674764 674764 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold240 SAMTools SNP 87799 87799 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold240 SAMTools SNP 92140 92140 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold240 SAMTools SNP 113683 113683 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold240 SAMTools SNP 125516 125516 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold240 SAMTools SNP 125552 125552 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold240 SAMTools SNP 154356 154356 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold241 SAMTools SNP 13483 13483 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold241 SAMTools SNP 13493 13493 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 17420 17420 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold241 SAMTools SNP 22410 22410 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold241 SAMTools SNP 23431 23431 19.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold241 SAMTools SNP 23942 23942 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold241 SAMTools SNP 33338 33338 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold241 SAMTools SNP 33972 33972 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold241 SAMTools SNP 34147 34147 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 34780 34780 65.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C5%2C0:9 scaffold241 SAMTools SNP 38627 38627 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold241 SAMTools SNP 53458 53458 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold241 SAMTools SNP 57356 57356 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00044%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C130:37 scaffold241 SAMTools SNP 57360 57360 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.02%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C139:33 scaffold241 SAMTools SNP 57393 57393 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 58249 58249 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold241 SAMTools SNP 89069 89069 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold241 SAMTools SNP 90224 90224 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold241 SAMTools SNP 90262 90262 55.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold241 SAMTools SNP 90335 90335 60.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold241 SAMTools SNP 90808 90808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 110791 110791 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 111605 111605 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 128704 128704 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold241 SAMTools SNP 128805 128805 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold241 SAMTools SNP 134131 134131 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 134187 134187 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold241 SAMTools SNP 147855 147855 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold241 SAMTools SNP 175199 175199 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 175678 175678 21.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold241 SAMTools SNP 177764 177764 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold241 SAMTools SNP 177777 177777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold241 SAMTools SNP 177803 177803 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C4%2C0%3BMQ%3D48%3BFQ%3D47%3BPV4%3D0.56%2C0.38%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold241 SAMTools SNP 179504 179504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold241 SAMTools SNP 186882 186882 44.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold241 SAMTools SNP 191240 191240 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold241 SAMTools SNP 193278 193278 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C128:99 scaffold241 SAMTools SNP 198936 198936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C14%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold241 SAMTools SNP 199038 199038 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 201534 201534 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C16%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold241 SAMTools SNP 201589 201589 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold241 SAMTools SNP 201630 201630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C48%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold241 SAMTools SNP 202749 202749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold241 SAMTools SNP 202773 202773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold241 SAMTools SNP 202887 202887 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold241 SAMTools SNP 202914 202914 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C1%2C0:4 scaffold241 SAMTools SNP 203392 203392 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold241 SAMTools SNP 203425 203425 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold241 SAMTools SNP 205359 205359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold241 SAMTools SNP 205412 205412 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold241 SAMTools SNP 207596 207596 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold241 SAMTools SNP 207697 207697 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold241 SAMTools SNP 208433 208433 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.008%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold241 SAMTools SNP 213750 213750 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 214356 214356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold241 SAMTools SNP 214473 214473 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold241 SAMTools SNP 227834 227834 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold241 SAMTools SNP 312224 312224 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 341249 341249 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 348993 348993 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold241 SAMTools SNP 421128 421128 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold241 SAMTools SNP 442433 442433 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold241 SAMTools SNP 442488 442488 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C5.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C235:91 scaffold241 SAMTools SNP 442831 442831 10.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold241 SAMTools SNP 443018 443018 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C76%2C17%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 443568 443568 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C48%2C66%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 443592 443592 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C30%2C57%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 443631 443631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C33%3BMQ%3D50%3BFQ%3D-204%3BPV4%3D1%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C177%2C0:99 scaffold241 SAMTools SNP 443781 443781 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C59%2C21%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 451035 451035 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C40%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0038%2C2.1e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C230:70 scaffold241 SAMTools SNP 451551 451551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold241 SAMTools SNP 453820 453820 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 453867 453867 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 454322 454322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C31%2C29%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 454726 454726 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold241 SAMTools SNP 455164 455164 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D27%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.00028%2C3e-07%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold241 SAMTools SNP 455432 455432 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 455439 455439 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold241 SAMTools SNP 455781 455781 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 455815 455815 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 457017 457017 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C0.49%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold241 SAMTools SNP 457021 457021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold241 SAMTools SNP 457198 457198 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold241 SAMTools SNP 457895 457895 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.43%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C121:71 scaffold241 SAMTools SNP 457935 457935 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.094%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C195:39 scaffold241 SAMTools SNP 457937 457937 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold241 SAMTools SNP 457952 457952 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold241 SAMTools SNP 458171 458171 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 458204 458204 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold241 SAMTools SNP 458234 458234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 458672 458672 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold241 SAMTools SNP 458859 458859 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C7%2C15%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.067%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold241 SAMTools SNP 458919 458919 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold241 SAMTools SNP 459133 459133 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.086%2C2.8e-07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold241 SAMTools SNP 459562 459562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C7%2C21%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.077%2C0.049%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold241 SAMTools SNP 459788 459788 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0041%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold241 SAMTools SNP 460061 460061 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold241 SAMTools SNP 460097 460097 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold241 SAMTools SNP 460127 460127 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold241 SAMTools SNP 460426 460426 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.045%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold241 SAMTools SNP 461965 461965 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold241 SAMTools SNP 463523 463523 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold241 SAMTools SNP 463829 463829 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold241 SAMTools SNP 463834 463834 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold241 SAMTools SNP 463950 463950 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold241 SAMTools SNP 464114 464114 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C173:99 scaffold241 SAMTools SNP 464158 464158 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C162:99 scaffold241 SAMTools SNP 464166 464166 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.016%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C245:90 scaffold241 SAMTools SNP 464645 464645 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 464768 464768 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 464834 464834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 465110 465110 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 465332 465332 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 465518 465518 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 465603 465603 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 465786 465786 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold241 SAMTools SNP 466687 466687 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold241 SAMTools SNP 466693 466693 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.27%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold241 SAMTools SNP 466732 466732 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold241 SAMTools SNP 468062 468062 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.24%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C213:99 scaffold241 SAMTools SNP 468077 468077 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold241 SAMTools SNP 468098 468098 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C94:53 scaffold241 SAMTools SNP 468117 468117 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C199:70 scaffold241 SAMTools SNP 469802 469802 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 469816 469816 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 469908 469908 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold241 SAMTools SNP 470806 470806 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold241 SAMTools SNP 471481 471481 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold241 SAMTools SNP 471534 471534 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.39%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold241 SAMTools SNP 473437 473437 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D54.5%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C82:84 scaffold241 SAMTools SNP 473468 473468 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C225:89 scaffold241 SAMTools SNP 473491 473491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold241 SAMTools SNP 480965 480965 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold241 SAMTools SNP 481157 481157 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold241 SAMTools SNP 485218 485218 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold241 SAMTools SNP 489935 489935 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C40%2C36%2C32%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.87%2C1%2C0.063%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 490246 490246 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold241 SAMTools SNP 491314 491314 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold241 SAMTools SNP 494546 494546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C48%2C14%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C4.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 494831 494831 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C52%2C11%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 497171 497171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C63%2C33%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 497189 497189 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 497198 497198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C69%2C15%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 497599 497599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 497901 497901 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 498129 498129 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C73%2C68%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.49%2C2.2e-13%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C255%2C0:99 scaffold241 SAMTools SNP 498643 498643 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C60%2C14%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D4e-05%2C1%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold241 SAMTools SNP 498850 498850 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C39%2C50%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1.2e-39%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 502180 502180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold241 SAMTools SNP 502195 502195 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C104%2C27%2C31%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.034%2C1.7e-86%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold241 SAMTools SNP 502853 502853 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.059%2C0.37%2C1%2C3.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold241 SAMTools SNP 503911 503911 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C51%2C0:99 scaffold241 SAMTools SNP 503920 503920 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C5%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.24%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C42%2C0:81 scaffold241 SAMTools SNP 504328 504328 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C20%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C252:99 scaffold241 SAMTools SNP 504502 504502 32 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold241 SAMTools SNP 504503 504503 62.3 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold241 SAMTools SNP 504969 504969 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1160%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D473%2C104%2C243%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 505407 505407 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold241 SAMTools SNP 505528 505528 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1037%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C385%2C125%2C270%3BMQ%3D18%3BFQ%3D173%3BPV4%3D0.89%2C1%2C0.0014%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C227:99 scaffold241 SAMTools SNP 507338 507338 6.98 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold241 SAMTools SNP 512613 512613 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold241 SAMTools SNP 513180 513180 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 513465 513465 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1072%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C451%2C25%2C81%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.81%2C5.9e-11%2C0.0084%2C6.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold241 SAMTools SNP 513531 513531 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D618%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D344%2C158%2C22%2C62%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D3.7e-13%2C1%2C0.0072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold241 SAMTools SNP 540344 540344 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold241 SAMTools SNP 559489 559489 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 559503 559503 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 579634 579634 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 584586 584586 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold241 SAMTools SNP 584776 584776 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D244%2C18%2C193%2C48%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1.7e-05%2C0%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold241 SAMTools SNP 584860 584860 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D747%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C178%2C175%2C228%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C8.4e-21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 586279 586279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C160%2C31%2C184%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.086%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 586962 586962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C170%2C53%2C188%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 587907 587907 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C33%2C66%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 589258 589258 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C186:51 scaffold241 SAMTools SNP 589288 589288 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C4.2e-10%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 589333 589333 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold241 SAMTools SNP 590093 590093 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold241 SAMTools SNP 590111 590111 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.48%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold241 SAMTools SNP 590138 590138 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 590147 590147 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C0.073%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 590159 590159 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 593635 593635 21 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C12%2C50%2C0%2C47:15 scaffold241 SAMTools SNP 593782 593782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C162%2C76%2C157%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C7.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 595151 595151 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 595314 595314 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.17%2C1.3e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C37:40 scaffold241 SAMTools SNP 595326 595326 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C54%2C0:99 scaffold241 SAMTools SNP 595335 595335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C220%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 597803 597803 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold241 SAMTools SNP 597887 597887 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold241 SAMTools SNP 597984 597984 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C226:50 scaffold241 SAMTools SNP 598412 598412 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C239:99 scaffold241 SAMTools SNP 598436 598436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold241 SAMTools SNP 598984 598984 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C21%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 599460 599460 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C14%2C36%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold241 SAMTools SNP 599761 599761 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C48%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C5.7e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 599781 599781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C59%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold241 SAMTools SNP 599821 599821 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C39%2C45%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 600925 600925 61.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C12%2C0:21 scaffold241 SAMTools SNP 602385 602385 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold241 SAMTools SNP 604613 604613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 604622 604622 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold241 SAMTools SNP 604657 604657 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C69%2C12%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D6.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold241 SAMTools SNP 606126 606126 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C36%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold241 SAMTools SNP 606322 606322 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C23%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 606326 606326 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 612013 612013 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 612031 612031 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 612034 612034 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 612055 612055 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C201:81 scaffold241 SAMTools SNP 612073 612073 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold241 SAMTools SNP 612625 612625 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold241 SAMTools SNP 637777 637777 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 643275 643275 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C99:99 scaffold241 SAMTools SNP 647622 647622 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.35%2C0.25%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold241 SAMTools SNP 653137 653137 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C127:99 scaffold241 SAMTools SNP 656345 656345 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold241 SAMTools SNP 656398 656398 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.26%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 656653 656653 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold241 SAMTools SNP 656779 656779 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold241 SAMTools SNP 657598 657598 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold241 SAMTools SNP 659917 659917 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 660022 660022 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold241 SAMTools SNP 660312 660312 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 660405 660405 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C49%2C2%2C37%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C8.4e-68%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold241 SAMTools SNP 660702 660702 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold241 SAMTools SNP 662594 662594 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C24%2C0:45 scaffold241 SAMTools SNP 663629 663629 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold241 SAMTools SNP 674793 674793 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold241 SAMTools SNP 678921 678921 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold241 SAMTools SNP 684605 684605 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold241 SAMTools SNP 686320 686320 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 686808 686808 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold241 SAMTools SNP 690134 690134 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold241 SAMTools SNP 690181 690181 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.093%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold241 SAMTools SNP 690194 690194 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.0012%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 690262 690262 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold241 SAMTools SNP 690579 690579 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold241 SAMTools SNP 690608 690608 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold241 SAMTools SNP 691036 691036 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold241 SAMTools SNP 691057 691057 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold241 SAMTools SNP 692253 692253 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold241 SAMTools SNP 705304 705304 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold241 SAMTools SNP 705318 705318 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 708460 708460 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 712704 712704 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold241 SAMTools SNP 715172 715172 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 722858 722858 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold241 SAMTools SNP 722873 722873 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.04%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold241 SAMTools SNP 724375 724375 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold241 SAMTools SNP 724444 724444 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 725687 725687 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold241 SAMTools SNP 725717 725717 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold241 SAMTools SNP 725742 725742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 725935 725935 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold241 SAMTools SNP 726419 726419 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.62%2C1%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold241 SAMTools SNP 726434 726434 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold241 SAMTools SNP 726893 726893 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C8%2C51%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C2.5e-09%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 726923 726923 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.73%2C1.6e-10%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold241 SAMTools SNP 727280 727280 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C23%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.8e-27%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold241 SAMTools SNP 727811 727811 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C38%3BMQ%3D35%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold241 SAMTools SNP 728018 728018 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C29%3BMQ%3D47%3BFQ%3D164%3BPV4%3D0.31%2C0.063%2C0.072%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold241 SAMTools SNP 729276 729276 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold241 SAMTools SNP 729824 729824 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C48%2C0:93 scaffold241 SAMTools SNP 733629 733629 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.025%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C151:46 scaffold241 SAMTools SNP 733861 733861 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 734280 734280 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold241 SAMTools SNP 734313 734313 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold241 SAMTools SNP 734328 734328 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 734357 734357 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold241 SAMTools SNP 734478 734478 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold241 SAMTools SNP 734481 734481 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C72:75 scaffold241 SAMTools SNP 734798 734798 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 736568 736568 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 737031 737031 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C39%2C0:75 scaffold241 SAMTools SNP 737040 737040 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold241 SAMTools SNP 737259 737259 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C111:90 scaffold241 SAMTools SNP 737283 737283 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C0.00067%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold241 SAMTools SNP 737478 737478 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold241 SAMTools SNP 737532 737532 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold241 SAMTools SNP 737667 737667 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold241 SAMTools SNP 737817 737817 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold241 SAMTools SNP 737850 737850 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C188:84 scaffold241 SAMTools SNP 737883 737883 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C24%2C0:45 scaffold241 SAMTools SNP 750234 750234 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold241 SAMTools SNP 750242 750242 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold241 SAMTools SNP 750283 750283 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold241 SAMTools SNP 754744 754744 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 755092 755092 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C57%2C0:99 scaffold241 SAMTools SNP 756167 756167 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 756335 756335 6.17 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold241 SAMTools SNP 763964 763964 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C9.2e-32%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold241 SAMTools SNP 763993 763993 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1.4e-13%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 764679 764679 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.2e-20%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C228:28 scaffold241 SAMTools SNP 774868 774868 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold241 SAMTools SNP 783315 783315 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 783347 783347 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 784050 784050 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 784100 784100 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 784146 784146 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 784456 784456 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold241 SAMTools SNP 784497 784497 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold241 SAMTools SNP 784864 784864 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold241 SAMTools SNP 785026 785026 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold241 SAMTools SNP 785075 785075 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold241 SAMTools SNP 786077 786077 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold241 SAMTools SNP 786107 786107 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C229:99 scaffold241 SAMTools SNP 786132 786132 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold241 SAMTools SNP 786146 786146 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C171:99 scaffold241 SAMTools SNP 786691 786691 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 787270 787270 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold241 SAMTools SNP 787400 787400 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold241 SAMTools SNP 787474 787474 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold241 SAMTools SNP 790840 790840 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 791155 791155 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 791242 791242 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold241 SAMTools SNP 791248 791248 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 791646 791646 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 791688 791688 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 793307 793307 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold241 SAMTools SNP 794510 794510 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C8.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C232:62 scaffold241 SAMTools SNP 794872 794872 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1.2e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C119:99 scaffold241 SAMTools SNP 795142 795142 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold241 SAMTools SNP 795517 795517 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold241 SAMTools SNP 795521 795521 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold241 SAMTools SNP 795552 795552 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 795923 795923 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 798298 798298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 798424 798424 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold241 SAMTools SNP 799336 799336 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.087%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold241 SAMTools SNP 799351 799351 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold241 SAMTools SNP 799407 799407 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold241 SAMTools SNP 804370 804370 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C20%2C60%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1.1e-10%2C6.9e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C193:99 scaffold241 SAMTools SNP 805550 805550 67.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.14%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold241 SAMTools SNP 807020 807020 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold241 SAMTools SNP 809107 809107 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.25%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold241 SAMTools SNP 810478 810478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C242%2C8%2C177%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 810493 810493 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C225%2C2%2C184%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.033%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 811672 811672 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C69%2C11%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 812045 812045 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C355%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 812057 812057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 813614 813614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C15%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 814192 814192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C262%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 814318 814318 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C9%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold241 SAMTools SNP 814321 814321 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.49%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 814369 814369 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C0%2C27%3BMQ%3D50%3BFQ%3D176%3BPV4%3D8.3e-09%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold241 SAMTools SNP 814372 814372 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C26%2C0%2C31%3BMQ%3D50%3BFQ%3D183%3BPV4%3D3e-09%2C0.49%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold241 SAMTools SNP 821315 821315 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold241 SAMTools SNP 821385 821385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold241 SAMTools SNP 821805 821805 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold241 SAMTools SNP 822496 822496 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C175%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 822635 822635 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C30%2C0%2C33%3BMQ%3D50%3BFQ%3D44%3BPV4%3D7.1e-08%2C1.5e-25%2C1%2C6.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold241 SAMTools SNP 822765 822765 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C48%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 823134 823134 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C21%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold241 SAMTools SNP 823509 823509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C6%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold241 SAMTools SNP 823552 823552 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0023%2C0.0064%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold241 SAMTools SNP 824340 824340 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C46%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold241 SAMTools SNP 824417 824417 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 824810 824810 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold241 SAMTools SNP 828000 828000 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold241 SAMTools SNP 828009 828009 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C170:31 scaffold241 SAMTools SNP 828042 828042 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 828227 828227 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold241 SAMTools SNP 828242 828242 156 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66%2C228%2C0%2C222:39 scaffold241 SAMTools SNP 828290 828290 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold241 SAMTools SNP 828672 828672 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold241 SAMTools SNP 828731 828731 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.03%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold241 SAMTools SNP 829236 829236 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.45%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 829391 829391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C25%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold241 SAMTools SNP 829442 829442 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C19%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.24%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold241 SAMTools SNP 829737 829737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C54%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold241 SAMTools SNP 829812 829812 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C54%2C0:99 scaffold241 SAMTools SNP 829851 829851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.24%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 833577 833577 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.00098%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold241 SAMTools SNP 833648 833648 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C22%2C84%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 834505 834505 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C52%2C3%2C34%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.00025%2C3.8e-35%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold241 SAMTools SNP 834586 834586 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C34%2C45%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.15%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 835573 835573 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C61%2C14%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 836275 836275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 836317 836317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.013%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 836366 836366 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C21%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 837677 837677 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C89%2C22%2C44%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.5%2C1.1e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold241 SAMTools SNP 839277 839277 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C1%2C15%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C246:99 scaffold241 SAMTools SNP 839328 839328 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C4.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold241 SAMTools SNP 843543 843543 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold241 SAMTools SNP 843894 843894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold241 SAMTools SNP 844255 844255 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 846527 846527 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold241 SAMTools SNP 846560 846560 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D37.4%3BPV4%3D0.22%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C73:67 scaffold241 SAMTools SNP 846881 846881 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold241 SAMTools SNP 846884 846884 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold241 SAMTools SNP 847208 847208 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 847375 847375 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold241 SAMTools SNP 847398 847398 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.37%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold241 SAMTools SNP 847440 847440 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold241 SAMTools SNP 847467 847467 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold241 SAMTools SNP 847702 847702 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold241 SAMTools SNP 848005 848005 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 848051 848051 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 882040 882040 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold241 SAMTools SNP 882082 882082 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold241 SAMTools SNP 882105 882105 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 882629 882629 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C15%2C5%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold241 SAMTools SNP 882677 882677 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 882715 882715 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C56%2C3%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 883121 883121 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 883141 883141 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold241 SAMTools SNP 883587 883587 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold241 SAMTools SNP 883611 883611 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C0.42%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C175:99 scaffold241 SAMTools SNP 883652 883652 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold241 SAMTools SNP 885344 885344 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 885345 885345 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 885355 885355 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 885364 885364 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold241 SAMTools SNP 885623 885623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold241 SAMTools SNP 886297 886297 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold241 SAMTools SNP 889693 889693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.42%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C11:14 scaffold241 SAMTools SNP 891644 891644 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C159:36 scaffold241 SAMTools SNP 892633 892633 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold241 SAMTools SNP 892783 892783 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold241 SAMTools SNP 892790 892790 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C105:28 scaffold241 SAMTools SNP 893638 893638 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold241 SAMTools SNP 893677 893677 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold241 SAMTools SNP 893752 893752 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold241 SAMTools SNP 893761 893761 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold241 SAMTools SNP 895086 895086 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 895122 895122 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 896957 896957 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold241 SAMTools SNP 897406 897406 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold241 SAMTools SNP 899522 899522 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold241 SAMTools SNP 899555 899555 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 899968 899968 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C112:99 scaffold241 SAMTools SNP 900001 900001 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold241 SAMTools SNP 900836 900836 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 901390 901390 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold241 SAMTools SNP 901434 901434 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold241 SAMTools SNP 901900 901900 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold241 SAMTools SNP 901936 901936 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold241 SAMTools SNP 901948 901948 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold241 SAMTools SNP 902238 902238 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold241 SAMTools SNP 904829 904829 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold241 SAMTools SNP 905722 905722 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold241 SAMTools SNP 905746 905746 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 906829 906829 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold241 SAMTools SNP 906832 906832 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold241 SAMTools SNP 907338 907338 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold241 SAMTools SNP 907774 907774 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold241 SAMTools SNP 908440 908440 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C104:31 scaffold241 SAMTools SNP 908699 908699 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold241 SAMTools SNP 908726 908726 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 908796 908796 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold241 SAMTools SNP 909682 909682 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold241 SAMTools SNP 909699 909699 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 912188 912188 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold241 SAMTools SNP 912236 912236 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold241 SAMTools SNP 913822 913822 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold241 SAMTools SNP 913846 913846 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold241 SAMTools SNP 913951 913951 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold241 SAMTools SNP 913996 913996 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold241 SAMTools SNP 919014 919014 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold241 SAMTools SNP 919059 919059 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold241 SAMTools SNP 919569 919569 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.7e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C243:36 scaffold241 SAMTools SNP 920181 920181 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C124:36 scaffold241 SAMTools SNP 946141 946141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold241 SAMTools SNP 946509 946509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold241 SAMTools SNP 946710 946710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold241 SAMTools SNP 946763 946763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C0.18%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold241 SAMTools SNP 947357 947357 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold241 SAMTools SNP 947954 947954 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C29%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.006%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold241 SAMTools SNP 949384 949384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0088%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold241 SAMTools SNP 953400 953400 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D89.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C121:99 scaffold241 SAMTools SNP 957539 957539 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold241 SAMTools SNP 958076 958076 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C23%2C27%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.49%2C2.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold241 SAMTools SNP 995193 995193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold241 SAMTools SNP 996243 996243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C2%2C43%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-12%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold241 SAMTools SNP 996252 996252 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C44%2C61%3BMQ%3D50%3BFQ%3D170%3BPV4%3D2.9e-14%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold241 SAMTools SNP 997924 997924 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold242 SAMTools SNP 43707 43707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold242 SAMTools SNP 43736 43736 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold242 SAMTools SNP 43905 43905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold242 SAMTools SNP 44000 44000 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C33%2C0:63 scaffold242 SAMTools SNP 56568 56568 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold242 SAMTools SNP 56604 56604 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold242 SAMTools SNP 60926 60926 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold242 SAMTools SNP 60931 60931 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C37:40 scaffold242 SAMTools SNP 61690 61690 22.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold242 SAMTools SNP 112255 112255 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold242 SAMTools SNP 112274 112274 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold242 SAMTools SNP 112445 112445 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold242 SAMTools SNP 112599 112599 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold242 SAMTools SNP 112886 112886 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold242 SAMTools SNP 148394 148394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold242 SAMTools SNP 148973 148973 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold242 SAMTools SNP 149501 149501 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C27%3BMQ%3D49%3BFQ%3D-105%3BPV4%3D0.13%2C2.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C78%2C0:99 scaffold242 SAMTools SNP 149529 149529 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C12%3BMQ%3D49%3BFQ%3D163%3BPV4%3D0.01%2C3.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold242 SAMTools SNP 151474 151474 13.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold242 SAMTools SNP 151695 151695 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold242 SAMTools SNP 166393 166393 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold243 SAMTools SNP 1572 1572 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold243 SAMTools SNP 1630 1630 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold243 SAMTools SNP 32521 32521 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold243 SAMTools SNP 32533 32533 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold243 SAMTools SNP 32849 32849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold243 SAMTools SNP 33148 33148 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold243 SAMTools SNP 33210 33210 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.092%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold243 SAMTools SNP 34684 34684 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold243 SAMTools SNP 45791 45791 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold243 SAMTools SNP 47311 47311 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold243 SAMTools SNP 47549 47549 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold243 SAMTools SNP 48226 48226 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold243 SAMTools SNP 48350 48350 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold243 SAMTools SNP 48721 48721 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold243 SAMTools SNP 107996 107996 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold243 SAMTools SNP 150309 150309 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold243 SAMTools SNP 160179 160179 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C24%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C160:99 scaffold247 SAMTools SNP 143 143 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold247 SAMTools SNP 144 144 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold247 SAMTools SNP 188 188 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold247 SAMTools SNP 54354 54354 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold247 SAMTools SNP 54377 54377 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold247 SAMTools SNP 54478 54478 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold247 SAMTools SNP 54620 54620 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold247 SAMTools SNP 54679 54679 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold247 SAMTools SNP 74247 74247 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold247 SAMTools SNP 82519 82519 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold247 SAMTools SNP 82739 82739 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold247 SAMTools SNP 139783 139783 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold247 SAMTools SNP 190420 190420 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold247 SAMTools SNP 300679 300679 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold247 SAMTools SNP 347208 347208 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D48%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold247 SAMTools SNP 347214 347214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold247 SAMTools SNP 413458 413458 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold247 SAMTools SNP 431256 431256 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold247 SAMTools SNP 456187 456187 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold247 SAMTools SNP 456705 456705 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold247 SAMTools SNP 456731 456731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold247 SAMTools SNP 456881 456881 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold247 SAMTools SNP 462651 462651 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold247 SAMTools SNP 462962 462962 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold247 SAMTools SNP 463004 463004 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold247 SAMTools SNP 464011 464011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold247 SAMTools SNP 464101 464101 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold247 SAMTools SNP 464978 464978 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C228:99 scaffold247 SAMTools SNP 465180 465180 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.061%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C214:99 scaffold247 SAMTools SNP 465323 465323 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold247 SAMTools SNP 466128 466128 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0053%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C230:33 scaffold247 SAMTools SNP 466751 466751 18.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold247 SAMTools SNP 468242 468242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C8%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.55%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold247 SAMTools SNP 468274 468274 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D33%3BFQ%3D14.2%3BPV4%3D0.14%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C41:44 scaffold247 SAMTools SNP 468320 468320 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold247 SAMTools SNP 468325 468325 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0059%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold247 SAMTools SNP 469852 469852 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C7%3BMQ%3D45%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C221:99 scaffold247 SAMTools SNP 469856 469856 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D42%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C179:91 scaffold247 SAMTools SNP 553821 553821 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C5e-12%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C112:65 scaffold247 SAMTools SNP 555122 555122 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold247 SAMTools SNP 557271 557271 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold247 SAMTools SNP 557328 557328 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold248 SAMTools SNP 18170 18170 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold248 SAMTools SNP 48001 48001 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold248 SAMTools SNP 48336 48336 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold248 SAMTools SNP 49521 49521 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.24%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold248 SAMTools SNP 51207 51207 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold248 SAMTools SNP 51701 51701 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C33%2C0:63 scaffold248 SAMTools SNP 53580 53580 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold248 SAMTools SNP 53602 53602 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold248 SAMTools SNP 53626 53626 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold248 SAMTools SNP 54568 54568 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold248 SAMTools SNP 56054 56054 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C133:99 scaffold248 SAMTools SNP 56380 56380 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold248 SAMTools SNP 56387 56387 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold248 SAMTools SNP 56403 56403 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold248 SAMTools SNP 61306 61306 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C36%2C0:69 scaffold248 SAMTools SNP 61626 61626 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C6.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C247:60 scaffold248 SAMTools SNP 62592 62592 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C4.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C135:99 scaffold248 SAMTools SNP 62625 62625 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold248 SAMTools SNP 62913 62913 79.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold248 SAMTools SNP 62966 62966 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C5.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold248 SAMTools SNP 73451 73451 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold248 SAMTools SNP 76753 76753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 76760 76760 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.01%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold248 SAMTools SNP 77179 77179 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.49%2C0.03%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C239:95 scaffold248 SAMTools SNP 77418 77418 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold248 SAMTools SNP 77421 77421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 80924 80924 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold248 SAMTools SNP 81903 81903 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold248 SAMTools SNP 81945 81945 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold248 SAMTools SNP 82007 82007 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold248 SAMTools SNP 82154 82154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold248 SAMTools SNP 82262 82262 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C39%2C0:75 scaffold248 SAMTools SNP 83731 83731 127 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.076%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C242:99 scaffold248 SAMTools SNP 86021 86021 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold248 SAMTools SNP 90775 90775 14.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold248 SAMTools SNP 91062 91062 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.036%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C210:50 scaffold248 SAMTools SNP 92770 92770 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold248 SAMTools SNP 93931 93931 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold248 SAMTools SNP 94366 94366 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.24%2C0.0057%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C228:31 scaffold248 SAMTools SNP 94681 94681 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C36%2C0:69 scaffold248 SAMTools SNP 94694 94694 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.24%2C8.2e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C242:36 scaffold248 SAMTools SNP 96291 96291 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 97781 97781 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold248 SAMTools SNP 97810 97810 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold248 SAMTools SNP 100020 100020 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold248 SAMTools SNP 102920 102920 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D25%3BFQ%3D8.65%3BPV4%3D0.52%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C35:38 scaffold248 SAMTools SNP 102974 102974 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold248 SAMTools SNP 102999 102999 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D47%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C153:99 scaffold248 SAMTools SNP 103741 103741 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold248 SAMTools SNP 103787 103787 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold248 SAMTools SNP 103792 103792 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold248 SAMTools SNP 103832 103832 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold248 SAMTools SNP 103833 103833 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold248 SAMTools SNP 105521 105521 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.15%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C205:61 scaffold248 SAMTools SNP 108769 108769 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold248 SAMTools SNP 116338 116338 46.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold248 SAMTools SNP 116820 116820 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C255%2C0:99 scaffold248 SAMTools SNP 117324 117324 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold248 SAMTools SNP 118101 118101 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1232%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D523%2C30%2C315%2C60%3BMQ%3D50%3BFQ%3D42%3BPV4%3D2e-07%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold248 SAMTools SNP 118235 118235 7.83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D991%3BVDB%3D0.0141%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D42%3BFQ%3D-10.4%3BPV4%3D1%2C0.43%2C0.29%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C17:21 scaffold248 SAMTools SNP 118304 118304 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D722%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C649%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold248 SAMTools SNP 119365 119365 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold248 SAMTools SNP 119374 119374 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold248 SAMTools SNP 121005 121005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D654%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C457%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold248 SAMTools SNP 127209 127209 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C14%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold248 SAMTools SNP 129582 129582 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold248 SAMTools SNP 129649 129649 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C13%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 130780 130780 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.44%2C0.2%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C190:99 scaffold248 SAMTools SNP 131198 131198 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C54%2C0:99 scaffold248 SAMTools SNP 131348 131348 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.55%2C0.023%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold248 SAMTools SNP 132879 132879 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.15%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold248 SAMTools SNP 154986 154986 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold248 SAMTools SNP 158165 158165 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.23%2C0.00032%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold248 SAMTools SNP 158499 158499 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.051%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C188:30 scaffold248 SAMTools SNP 158541 158541 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold248 SAMTools SNP 161933 161933 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold248 SAMTools SNP 162445 162445 77.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold248 SAMTools SNP 168281 168281 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C12%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.011%2C0.00089%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold248 SAMTools SNP 169337 169337 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C12%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.66%2C1.2e-16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold248 SAMTools SNP 171530 171530 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C53%2C28%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 173982 173982 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C2%2C13%3BMQ%3D50%3BFQ%3D209%3BPV4%3D7.6e-06%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold248 SAMTools SNP 173985 173985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.9e-09%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 181345 181345 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 181451 181451 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold248 SAMTools SNP 181502 181502 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0012%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold248 SAMTools SNP 182069 182069 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.44%2C1.6e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C156:53 scaffold248 SAMTools SNP 183036 183036 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold248 SAMTools SNP 200150 200150 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold248 SAMTools SNP 200151 200151 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold248 SAMTools SNP 200199 200199 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C245:99 scaffold248 SAMTools SNP 205290 205290 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C22%3BMQ%3D26%3BFQ%3D30%3BPV4%3D0.091%2C1%2C0.00039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C240:60 scaffold248 SAMTools SNP 206547 206547 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.42%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C127:99 scaffold248 SAMTools SNP 206691 206691 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C2%3BMQ%3D44%3BFQ%3D136%3BPV4%3D0.19%2C0.45%2C0.31%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold248 SAMTools SNP 210062 210062 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold248 SAMTools SNP 210094 210094 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold248 SAMTools SNP 216096 216096 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C129:99 scaffold248 SAMTools SNP 217271 217271 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1518%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C665%2C85%2C305%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C1%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 217512 217512 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C112%2C41%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.13%2C0.091%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 218541 218541 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C47%2C41%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 220748 220748 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C17%2C33%2C28%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.00096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 220817 220817 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C50%3BMQ%3D47%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold248 SAMTools SNP 220820 220820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D47%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold248 SAMTools SNP 221262 221262 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C59%2C71%2C58%3BMQ%3D8%3BFQ%3D10.4%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C37:40 scaffold248 SAMTools SNP 221851 221851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D963%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D444%2C62%2C410%2C47%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.36%2C0.014%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 222368 222368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C752%2C94%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold248 SAMTools SNP 224163 224163 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1840%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D578%2C262%2C764%2C221%3BMQ%3D50%3BFQ%3D117%3BPV4%3D2.6e-05%2C0%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold248 SAMTools SNP 227914 227914 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold248 SAMTools SNP 229152 229152 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C18:21 scaffold248 SAMTools SNP 229211 229211 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.014%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold248 SAMTools SNP 231528 231528 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C7e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C237:99 scaffold248 SAMTools SNP 231597 231597 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.22%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold248 SAMTools SNP 232021 232021 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold248 SAMTools SNP 232057 232057 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold248 SAMTools SNP 234383 234383 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold248 SAMTools SNP 236328 236328 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 240402 240402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.21%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold248 SAMTools SNP 240432 240432 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold248 SAMTools SNP 240552 240552 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.093%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C249:99 scaffold248 SAMTools SNP 240751 240751 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold248 SAMTools SNP 241698 241698 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold248 SAMTools SNP 241710 241710 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold248 SAMTools SNP 241713 241713 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold248 SAMTools SNP 241751 241751 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold248 SAMTools SNP 242484 242484 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 242501 242501 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.8e-05%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold248 SAMTools SNP 242512 242512 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C5%2C13%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.045%2C0.13%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold248 SAMTools SNP 242545 242545 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 243169 243169 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C39%2C0:75 scaffold248 SAMTools SNP 243750 243750 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 243784 243784 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.56%2C0.061%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C248:99 scaffold248 SAMTools SNP 243859 243859 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold248 SAMTools SNP 243873 243873 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold248 SAMTools SNP 243886 243886 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.071%2C0.22%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold248 SAMTools SNP 245439 245439 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold248 SAMTools SNP 246582 246582 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold248 SAMTools SNP 246765 246765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold248 SAMTools SNP 247156 247156 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold248 SAMTools SNP 263364 263364 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold248 SAMTools SNP 284497 284497 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold248 SAMTools SNP 293319 293319 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold248 SAMTools SNP 293322 293322 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold248 SAMTools SNP 319640 319640 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold248 SAMTools SNP 320634 320634 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold248 SAMTools SNP 320971 320971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold248 SAMTools SNP 345561 345561 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold248 SAMTools SNP 353739 353739 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 438007 438007 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold248 SAMTools SNP 438031 438031 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold248 SAMTools SNP 438380 438380 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold248 SAMTools SNP 440859 440859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold248 SAMTools SNP 443448 443448 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold251 SAMTools SNP 166 166 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold251 SAMTools SNP 917 917 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold251 SAMTools SNP 1464 1464 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold251 SAMTools SNP 1527 1527 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold251 SAMTools SNP 1528 1528 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C96:40 scaffold251 SAMTools SNP 1536 1536 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold251 SAMTools SNP 3197 3197 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold251 SAMTools SNP 4807 4807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.045%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 5710 5710 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold251 SAMTools SNP 5730 5730 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C136:99 scaffold251 SAMTools SNP 7691 7691 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold251 SAMTools SNP 9603 9603 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold251 SAMTools SNP 9884 9884 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C230:99 scaffold251 SAMTools SNP 11369 11369 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.2e-16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold251 SAMTools SNP 11390 11390 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.56%2C0.015%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold251 SAMTools SNP 11405 11405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold251 SAMTools SNP 12151 12151 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold251 SAMTools SNP 12166 12166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C14%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 12191 12191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C53%2C3%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.36%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 13287 13287 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold251 SAMTools SNP 13299 13299 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold251 SAMTools SNP 13467 13467 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C34%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C7.9e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold251 SAMTools SNP 13741 13741 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold251 SAMTools SNP 17987 17987 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold251 SAMTools SNP 18068 18068 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C230:99 scaffold251 SAMTools SNP 19270 19270 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.65%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold251 SAMTools SNP 19288 19288 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold251 SAMTools SNP 19868 19868 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold251 SAMTools SNP 20097 20097 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D39%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold251 SAMTools SNP 20120 20120 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C7%2C4%3BMQ%3D37%3BFQ%3D81%3BPV4%3D0.13%2C1%2C0.086%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C223:99 scaffold251 SAMTools SNP 21192 21192 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C4%3BMQ%3D28%3BFQ%3D41.9%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C69:72 scaffold251 SAMTools SNP 21213 21213 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D18%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C45%2C0:85 scaffold251 SAMTools SNP 23368 23368 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold251 SAMTools SNP 23372 23372 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold251 SAMTools SNP 23690 23690 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold251 SAMTools SNP 23731 23731 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold251 SAMTools SNP 23743 23743 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold251 SAMTools SNP 23853 23853 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold251 SAMTools SNP 24688 24688 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D78.6%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C107:99 scaffold251 SAMTools SNP 26242 26242 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold251 SAMTools SNP 26252 26252 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D47%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C156:99 scaffold251 SAMTools SNP 26539 26539 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold251 SAMTools SNP 26572 26572 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold251 SAMTools SNP 26665 26665 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold251 SAMTools SNP 29806 29806 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C25%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 35245 35245 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold251 SAMTools SNP 40278 40278 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold251 SAMTools SNP 40571 40571 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold251 SAMTools SNP 40677 40677 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 41082 41082 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.19%2C0.00035%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold251 SAMTools SNP 41084 41084 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C12%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.18%2C1.9e-05%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold251 SAMTools SNP 41161 41161 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.8%3BPV4%3D1%2C0.027%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C41:43 scaffold251 SAMTools SNP 41209 41209 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold251 SAMTools SNP 41560 41560 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 41958 41958 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold251 SAMTools SNP 42018 42018 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold251 SAMTools SNP 42045 42045 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold251 SAMTools SNP 42750 42750 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold251 SAMTools SNP 42783 42783 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold251 SAMTools SNP 43215 43215 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold251 SAMTools SNP 43893 43893 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold251 SAMTools SNP 43900 43900 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold251 SAMTools SNP 43918 43918 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold251 SAMTools SNP 44750 44750 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.15%2C0.43%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold251 SAMTools SNP 45205 45205 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.52%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold251 SAMTools SNP 45253 45253 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold251 SAMTools SNP 45526 45526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold251 SAMTools SNP 45531 45531 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.2%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold251 SAMTools SNP 48146 48146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold251 SAMTools SNP 48164 48164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold251 SAMTools SNP 48583 48583 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold251 SAMTools SNP 48592 48592 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D28%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold251 SAMTools SNP 50267 50267 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold251 SAMTools SNP 50408 50408 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 50420 50420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 51148 51148 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C152:99 scaffold251 SAMTools SNP 51616 51616 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold251 SAMTools SNP 51626 51626 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold251 SAMTools SNP 52110 52110 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold251 SAMTools SNP 52140 52140 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold251 SAMTools SNP 52552 52552 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold251 SAMTools SNP 52914 52914 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold251 SAMTools SNP 52929 52929 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold251 SAMTools SNP 52962 52962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 53102 53102 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.23%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold251 SAMTools SNP 53132 53132 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 53144 53144 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 53183 53183 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C16%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.015%2C0.16%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold251 SAMTools SNP 54901 54901 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.36%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C171:99 scaffold251 SAMTools SNP 54934 54934 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C119:99 scaffold251 SAMTools SNP 55271 55271 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C81%2C0:99 scaffold251 SAMTools SNP 55986 55986 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold251 SAMTools SNP 55989 55989 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.011%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold251 SAMTools SNP 56028 56028 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold251 SAMTools SNP 56414 56414 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold251 SAMTools SNP 57028 57028 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold251 SAMTools SNP 57067 57067 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold251 SAMTools SNP 57097 57097 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold251 SAMTools SNP 57148 57148 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold251 SAMTools SNP 57446 57446 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold251 SAMTools SNP 57488 57488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold251 SAMTools SNP 57545 57545 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C0.0018%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold251 SAMTools SNP 57775 57775 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold251 SAMTools SNP 59142 59142 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold251 SAMTools SNP 59434 59434 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold251 SAMTools SNP 60086 60086 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.35%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold251 SAMTools SNP 60188 60188 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0014%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold251 SAMTools SNP 60224 60224 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold251 SAMTools SNP 61720 61720 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D86.6%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C114:99 scaffold251 SAMTools SNP 75280 75280 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold251 SAMTools SNP 82172 82172 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold251 SAMTools SNP 82486 82486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold251 SAMTools SNP 82805 82805 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold251 SAMTools SNP 83271 83271 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.0048%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold251 SAMTools SNP 83323 83323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C32%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold251 SAMTools SNP 84342 84342 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C17%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 493 493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 561 561 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C7%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.022%2C0.00035%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold252 SAMTools SNP 1645 1645 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold252 SAMTools SNP 5963 5963 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold252 SAMTools SNP 5977 5977 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold252 SAMTools SNP 8092 8092 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C105%2C0%2C48%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C3.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold252 SAMTools SNP 8110 8110 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C104%2C0%2C47%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.7e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold252 SAMTools SNP 10834 10834 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold252 SAMTools SNP 17434 17434 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold252 SAMTools SNP 17860 17860 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C11%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold252 SAMTools SNP 17875 17875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold252 SAMTools SNP 19101 19101 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C27%2C35%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 20188 20188 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 20543 20543 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.025%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C129:33 scaffold252 SAMTools SNP 20719 20719 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold252 SAMTools SNP 26600 26600 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.021%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C226:70 scaffold252 SAMTools SNP 28484 28484 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold252 SAMTools SNP 28554 28554 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold252 SAMTools SNP 28569 28569 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold252 SAMTools SNP 35636 35636 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold252 SAMTools SNP 37420 37420 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold252 SAMTools SNP 38535 38535 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold252 SAMTools SNP 48127 48127 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold252 SAMTools SNP 50650 50650 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold252 SAMTools SNP 50701 50701 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.24%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C237:99 scaffold252 SAMTools SNP 51724 51724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold252 SAMTools SNP 51952 51952 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C36%2C0:69 scaffold252 SAMTools SNP 52463 52463 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C75%2C0:99 scaffold252 SAMTools SNP 53886 53886 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C206:63 scaffold252 SAMTools SNP 53927 53927 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold252 SAMTools SNP 53986 53986 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C8%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.041%2C1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold252 SAMTools SNP 54242 54242 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold252 SAMTools SNP 54748 54748 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 54785 54785 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C11%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.67%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold252 SAMTools SNP 54793 54793 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.21%2C0.26%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold252 SAMTools SNP 54999 54999 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold252 SAMTools SNP 55949 55949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold252 SAMTools SNP 55967 55967 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C12%2C4%3BMQ%3D36%3BFQ%3D59%3BPV4%3D0.22%2C0.0013%2C0.04%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C86:89 scaffold252 SAMTools SNP 56169 56169 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C45%2C0:87 scaffold252 SAMTools SNP 56457 56457 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold252 SAMTools SNP 56764 56764 34.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold252 SAMTools SNP 57492 57492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold252 SAMTools SNP 57826 57826 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C246:30 scaffold252 SAMTools SNP 57987 57987 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C5.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C134:55 scaffold252 SAMTools SNP 59097 59097 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1.1e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold252 SAMTools SNP 60669 60669 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 61686 61686 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 61700 61700 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold252 SAMTools SNP 61709 61709 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold252 SAMTools SNP 62213 62213 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold252 SAMTools SNP 62438 62438 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.093%2C0.0073%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold252 SAMTools SNP 62508 62508 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.042%2C2.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold252 SAMTools SNP 62908 62908 25.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold252 SAMTools SNP 63179 63179 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.49%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold252 SAMTools SNP 63182 63182 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold252 SAMTools SNP 63207 63207 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold252 SAMTools SNP 63461 63461 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold252 SAMTools SNP 63462 63462 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold252 SAMTools SNP 63736 63736 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold252 SAMTools SNP 63745 63745 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold252 SAMTools SNP 63787 63787 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold252 SAMTools SNP 63847 63847 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold252 SAMTools SNP 63886 63886 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C21%2C0:39 scaffold252 SAMTools SNP 64300 64300 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold252 SAMTools SNP 64471 64471 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold252 SAMTools SNP 64769 64769 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C39%2C0:75 scaffold252 SAMTools SNP 65593 65593 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold252 SAMTools SNP 65971 65971 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold252 SAMTools SNP 68156 68156 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C174:99 scaffold252 SAMTools SNP 68441 68441 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold252 SAMTools SNP 69743 69743 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold252 SAMTools SNP 69818 69818 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold252 SAMTools SNP 70157 70157 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold252 SAMTools SNP 70487 70487 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 70493 70493 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold252 SAMTools SNP 70527 70527 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 70843 70843 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 72810 72810 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold252 SAMTools SNP 72867 72867 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold252 SAMTools SNP 72949 72949 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 73249 73249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 73325 73325 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold252 SAMTools SNP 73520 73520 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold252 SAMTools SNP 73728 73728 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold252 SAMTools SNP 73733 73733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold252 SAMTools SNP 74094 74094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold252 SAMTools SNP 74269 74269 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold252 SAMTools SNP 74305 74305 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D19%3BPV4%3D0.46%2C6.4e-11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C69:49 scaffold252 SAMTools SNP 74317 74317 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold252 SAMTools SNP 74561 74561 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C51%2C0:99 scaffold252 SAMTools SNP 74656 74656 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold252 SAMTools SNP 75256 75256 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C200:99 scaffold252 SAMTools SNP 75386 75386 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.048%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C204:86 scaffold252 SAMTools SNP 80526 80526 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold252 SAMTools SNP 84646 84646 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold252 SAMTools SNP 89704 89704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold252 SAMTools SNP 89723 89723 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold252 SAMTools SNP 90992 90992 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold252 SAMTools SNP 91003 91003 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold252 SAMTools SNP 93996 93996 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.023%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold252 SAMTools SNP 94017 94017 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.046%2C0.32%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold252 SAMTools SNP 96924 96924 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C4%2C13%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.72%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 98876 98876 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1463%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D786%2C0%2C600%2C1%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.43%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 98877 98877 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1465%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D605%2C1%2C786%2C0%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.44%2C1%2C4.9e-09%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 98894 98894 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1892%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1815%2C1%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold252 SAMTools SNP 99494 99494 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1990%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C650%2C119%2C1156%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.94%2C0.048%2C0.00036%2C3.4e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 99498 99498 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2047%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C1244%2C36%2C645%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 99837 99837 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2024%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C761%2C40%2C1183%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.062%2C1%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 100647 100647 135 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C47%2C32%2C160%2C0%2C157:27 scaffold252 SAMTools SNP 100658 100658 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C57%2C42%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold252 SAMTools SNP 101018 101018 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C96%2C7%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D9.3e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold252 SAMTools SNP 102247 102247 55.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold252 SAMTools SNP 103581 103581 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D35%2C1%2C44%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.7e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold252 SAMTools SNP 105240 105240 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.56%2C0.016%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C82:85 scaffold252 SAMTools SNP 105302 105302 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold252 SAMTools SNP 106491 106491 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C2%2C7%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.25%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold252 SAMTools SNP 106567 106567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 106982 106982 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold252 SAMTools SNP 107565 107565 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C27%2C0:51 scaffold252 SAMTools SNP 107931 107931 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 107972 107972 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 109753 109753 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold252 SAMTools SNP 110448 110448 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold252 SAMTools SNP 110449 110449 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C97:99 scaffold252 SAMTools SNP 110473 110473 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold252 SAMTools SNP 110768 110768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C22%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D0.35%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold252 SAMTools SNP 110771 110771 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C13%2C3%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.00075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold252 SAMTools SNP 111119 111119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 111226 111226 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 111809 111809 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold252 SAMTools SNP 112954 112954 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold252 SAMTools SNP 113254 113254 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C56%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.5e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold252 SAMTools SNP 148087 148087 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold252 SAMTools SNP 156953 156953 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.45%2C0.00028%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold252 SAMTools SNP 224928 224928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold252 SAMTools SNP 227695 227695 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold252 SAMTools SNP 260070 260070 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.11%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold252 SAMTools SNP 266504 266504 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold252 SAMTools SNP 267390 267390 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold252 SAMTools SNP 267391 267391 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold252 SAMTools SNP 270115 270115 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0012%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold252 SAMTools SNP 270157 270157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold252 SAMTools SNP 272323 272323 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold253 SAMTools SNP 1828 1828 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold253 SAMTools SNP 4838 4838 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C27%2C0:51 scaffold253 SAMTools SNP 5008 5008 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold253 SAMTools SNP 6200 6200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold253 SAMTools SNP 6780 6780 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold253 SAMTools SNP 8099 8099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold253 SAMTools SNP 15569 15569 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold253 SAMTools SNP 18351 18351 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold253 SAMTools SNP 23669 23669 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold253 SAMTools SNP 27175 27175 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold253 SAMTools SNP 44013 44013 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold253 SAMTools SNP 44053 44053 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold253 SAMTools SNP 44360 44360 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold253 SAMTools SNP 45784 45784 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold253 SAMTools SNP 46015 46015 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C14%2C12%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold253 SAMTools SNP 46344 46344 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold253 SAMTools SNP 46348 46348 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold253 SAMTools SNP 47244 47244 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C1%2C17%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold253 SAMTools SNP 47429 47429 73 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D74.6%3BPV4%3D1%2C3.4e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C107:99 scaffold253 SAMTools SNP 48005 48005 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C39%2C0:75 scaffold253 SAMTools SNP 48512 48512 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold253 SAMTools SNP 63585 63585 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C16%3BMQ%3D44%3BFQ%3D31%3BPV4%3D0.00055%2C2.5e-35%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold257 SAMTools SNP 10568 10568 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 19833 19833 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C11%3BMQ%3D49%3BFQ%3D40%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C126:70 scaffold257 SAMTools SNP 58223 58223 49.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold257 SAMTools SNP 59372 59372 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 59391 59391 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold257 SAMTools SNP 59896 59896 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold257 SAMTools SNP 60589 60589 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.4%2C0.15%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C112:55 scaffold257 SAMTools SNP 60595 60595 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold257 SAMTools SNP 60802 60802 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 63262 63262 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold257 SAMTools SNP 63289 63289 122 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C86%2C74%2C154%2C0%2C148:21 scaffold257 SAMTools SNP 64120 64120 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold257 SAMTools SNP 64445 64445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold257 SAMTools SNP 64640 64640 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold257 SAMTools SNP 64656 64656 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 67768 67768 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.057%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold257 SAMTools SNP 67794 67794 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0023%2C0.0043%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold257 SAMTools SNP 68683 68683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 71078 71078 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 74409 74409 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C48%2C0:93 scaffold257 SAMTools SNP 76069 76069 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C13%2C9%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.15%2C1.5e-26%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold257 SAMTools SNP 77059 77059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 77413 77413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold257 SAMTools SNP 77668 77668 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.23%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold257 SAMTools SNP 78124 78124 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold257 SAMTools SNP 78237 78237 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold257 SAMTools SNP 81647 81647 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 81695 81695 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 82797 82797 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C149:99 scaffold257 SAMTools SNP 83190 83190 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold257 SAMTools SNP 84963 84963 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 85456 85456 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold257 SAMTools SNP 85507 85507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold257 SAMTools SNP 85581 85581 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 87585 87585 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold257 SAMTools SNP 88811 88811 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.58%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold257 SAMTools SNP 89137 89137 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 89857 89857 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C51%2C0:99 scaffold257 SAMTools SNP 92698 92698 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 92733 92733 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold257 SAMTools SNP 97961 97961 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 98026 98026 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold257 SAMTools SNP 98028 98028 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.042%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold257 SAMTools SNP 98242 98242 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C25%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold257 SAMTools SNP 98278 98278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold257 SAMTools SNP 98431 98431 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 98467 98467 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C13%2C4%2C15%3BMQ%3D50%3BFQ%3D129%3BPV4%3D5.5e-09%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold257 SAMTools SNP 98617 98617 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 98811 98811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold257 SAMTools SNP 99159 99159 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C2.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C223:99 scaffold257 SAMTools SNP 99589 99589 129 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C28%2C16%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.4%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold257 SAMTools SNP 99631 99631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C74%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 99874 99874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C22%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 99892 99892 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C41%2C12%2C4%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold257 SAMTools SNP 99902 99902 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 100115 100115 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold257 SAMTools SNP 100591 100591 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold257 SAMTools SNP 100729 100729 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold257 SAMTools SNP 100741 100741 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold257 SAMTools SNP 100744 100744 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 102106 102106 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C36%2C0:69 scaffold257 SAMTools SNP 102172 102172 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 102848 102848 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold257 SAMTools SNP 102932 102932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 103684 103684 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.12%2C0.29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold257 SAMTools SNP 104732 104732 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C63%2C0:99 scaffold257 SAMTools SNP 104832 104832 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.22%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold257 SAMTools SNP 109498 109498 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C318%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 109850 109850 84.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D695%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold257 SAMTools SNP 109851 109851 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D706%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold257 SAMTools SNP 110285 110285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C35%2C376%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 110355 110355 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C58%2C0%2C18%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00031%2C1%2C1%2C4.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold257 SAMTools SNP 110407 110407 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.26%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold257 SAMTools SNP 110432 110432 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold257 SAMTools SNP 110786 110786 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C35%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold257 SAMTools SNP 110812 110812 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 110902 110902 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.32%2C0.00037%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold257 SAMTools SNP 110912 110912 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C17%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C0.011%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold257 SAMTools SNP 114339 114339 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C33%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C132%2C0:99 scaffold257 SAMTools SNP 114913 114913 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.4%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold257 SAMTools SNP 114944 114944 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 115594 115594 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 115600 115600 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold257 SAMTools SNP 115675 115675 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold257 SAMTools SNP 115696 115696 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold257 SAMTools SNP 116477 116477 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold257 SAMTools SNP 116966 116966 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 117010 117010 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C39%2C0:75 scaffold257 SAMTools SNP 117043 117043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold257 SAMTools SNP 117085 117085 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold257 SAMTools SNP 117244 117244 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold257 SAMTools SNP 117316 117316 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold257 SAMTools SNP 117352 117352 55.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold257 SAMTools SNP 118826 118826 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C74:36 scaffold257 SAMTools SNP 119107 119107 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold257 SAMTools SNP 119636 119636 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 119660 119660 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 122661 122661 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C0.017%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold257 SAMTools SNP 123302 123302 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold257 SAMTools SNP 123894 123894 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold257 SAMTools SNP 124070 124070 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold257 SAMTools SNP 124533 124533 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 125111 125111 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold257 SAMTools SNP 125915 125915 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold257 SAMTools SNP 131028 131028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold257 SAMTools SNP 131063 131063 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold257 SAMTools SNP 131606 131606 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold257 SAMTools SNP 132180 132180 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 132476 132476 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold257 SAMTools SNP 132482 132482 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold257 SAMTools SNP 132488 132488 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 132973 132973 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.053%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold257 SAMTools SNP 132986 132986 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.029%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold257 SAMTools SNP 133037 133037 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold257 SAMTools SNP 136406 136406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.62%2C9.1e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold257 SAMTools SNP 137096 137096 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C63%2C0:99 scaffold257 SAMTools SNP 137117 137117 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C60%2C0:99 scaffold257 SAMTools SNP 143371 143371 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 146523 146523 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold257 SAMTools SNP 146564 146564 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold257 SAMTools SNP 146635 146635 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold257 SAMTools SNP 146780 146780 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold257 SAMTools SNP 146819 146819 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 147112 147112 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold257 SAMTools SNP 147558 147558 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.079%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold257 SAMTools SNP 147943 147943 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold257 SAMTools SNP 147986 147986 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 148041 148041 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold257 SAMTools SNP 148049 148049 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C142:36 scaffold257 SAMTools SNP 148466 148466 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.37%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold257 SAMTools SNP 148514 148514 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold257 SAMTools SNP 148518 148518 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 155987 155987 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C36%2C0:69 scaffold257 SAMTools SNP 156126 156126 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00018%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C196:62 scaffold257 SAMTools SNP 156197 156197 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold257 SAMTools SNP 156790 156790 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 157317 157317 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold257 SAMTools SNP 160938 160938 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 162540 162540 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold257 SAMTools SNP 169498 169498 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold257 SAMTools SNP 175624 175624 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 175631 175631 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 175955 175955 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 176015 176015 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold257 SAMTools SNP 181903 181903 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C1%2C174%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C4.5e-304%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold257 SAMTools SNP 181918 181918 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold257 SAMTools SNP 181942 181942 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C170%2C8%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-10%2C2.9e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 182032 182032 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 183009 183009 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C3%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.34%2C0.095%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold257 SAMTools SNP 183712 183712 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.0011%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold257 SAMTools SNP 183901 183901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold257 SAMTools SNP 183917 183917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold257 SAMTools SNP 184037 184037 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.56%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold257 SAMTools SNP 184334 184334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold257 SAMTools SNP 184418 184418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C24%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold257 SAMTools SNP 185071 185071 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C20%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold257 SAMTools SNP 185093 185093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C25%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold257 SAMTools SNP 185240 185240 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.32%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 185273 185273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 186075 186075 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C29%2C139%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.032%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 189932 189932 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.43%2C0.2%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C136:99 scaffold257 SAMTools SNP 193722 193722 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold257 SAMTools SNP 193978 193978 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 194011 194011 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold257 SAMTools SNP 194026 194026 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 195870 195870 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold257 SAMTools SNP 195927 195927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold257 SAMTools SNP 195933 195933 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 196931 196931 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 197606 197606 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold257 SAMTools SNP 197651 197651 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 197955 197955 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C26%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold257 SAMTools SNP 199355 199355 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold257 SAMTools SNP 211176 211176 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold257 SAMTools SNP 212806 212806 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold257 SAMTools SNP 233756 233756 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 233783 233783 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold257 SAMTools SNP 234912 234912 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C6%2C3%3BMQ%3D35%3BFQ%3D74%3BPV4%3D0.68%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold257 SAMTools SNP 240590 240590 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold257 SAMTools SNP 240593 240593 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold257 SAMTools SNP 256568 256568 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C3%3BMQ%3D48%3BFQ%3D71%3BPV4%3D0.018%2C0.018%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C201:99 scaffold257 SAMTools SNP 256770 256770 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 256819 256819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 256951 256951 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C2%2C0%3BMQ%3D47%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold257 SAMTools SNP 256960 256960 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C0%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold257 SAMTools SNP 256993 256993 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold257 SAMTools SNP 262900 262900 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold257 SAMTools SNP 262921 262921 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold257 SAMTools SNP 265286 265286 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C59%2C3%2C28%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.75%2C0.036%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 274910 274910 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold257 SAMTools SNP 275622 275622 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold257 SAMTools SNP 276557 276557 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 276563 276563 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 279499 279499 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C25%2C12%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.34%2C3.1e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold257 SAMTools SNP 296913 296913 53.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold257 SAMTools SNP 296999 296999 31 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C7%2C30%2C37%2C0%2C61:26 scaffold257 SAMTools SNP 297100 297100 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.018%2C1.4e-15%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold257 SAMTools SNP 297234 297234 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D661%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C23%2C20%2C28%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0085%2C9.2e-38%2C1%2C5.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold257 SAMTools SNP 297285 297285 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1203%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C67%2C33%2C50%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.45%2C4.5e-72%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold257 SAMTools SNP 297378 297378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C212%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 297411 297411 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C18%2C12%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.19%2C1e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold257 SAMTools SNP 297569 297569 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C37%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1.4e-19%2C2e-47%2C1%2C2.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold257 SAMTools SNP 297720 297720 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C103%2C2%2C87%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.69%2C4.2e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold257 SAMTools SNP 298104 298104 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C39%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.045%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C219:58 scaffold257 SAMTools SNP 298330 298330 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.061%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold257 SAMTools SNP 298635 298635 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C37%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0021%2C2.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold257 SAMTools SNP 298646 298646 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C33%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1.9e-25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold257 SAMTools SNP 298769 298769 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 298786 298786 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C7%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.11%2C9.7e-16%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold257 SAMTools SNP 298857 298857 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C0%2C27%3BMQ%3D50%3BFQ%3D62%3BPV4%3D4.9e-14%2C1.3e-39%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold257 SAMTools SNP 298966 298966 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold257 SAMTools SNP 303187 303187 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold257 SAMTools SNP 360862 360862 9.49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold257 SAMTools SNP 361894 361894 31.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold257 SAMTools SNP 362037 362037 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold257 SAMTools SNP 369337 369337 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold257 SAMTools SNP 369355 369355 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold257 SAMTools SNP 372151 372151 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 375907 375907 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold257 SAMTools SNP 401700 401700 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold257 SAMTools SNP 402107 402107 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold257 SAMTools SNP 402110 402110 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.077%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold257 SAMTools SNP 404336 404336 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D39%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold257 SAMTools SNP 406160 406160 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C105%2C0:99 scaffold257 SAMTools SNP 406174 406174 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold257 SAMTools SNP 407049 407049 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C31%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold257 SAMTools SNP 408341 408341 58.1 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold257 SAMTools SNP 408547 408547 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C123%2C3%2C78%3BMQ%3D26%3BFQ%3D144%3BPV4%3D0.3%2C1%2C0.27%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C201:99 scaffold257 SAMTools SNP 421618 421618 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold257 SAMTools SNP 423427 423427 28.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold257 SAMTools SNP 424009 424009 30.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold257 SAMTools SNP 424094 424094 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C36%2C0:69 scaffold257 SAMTools SNP 424412 424412 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 424469 424469 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold257 SAMTools SNP 430815 430815 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold257 SAMTools SNP 431024 431024 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C24%2C0:45 scaffold257 SAMTools SNP 431078 431078 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.089%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold257 SAMTools SNP 431399 431399 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 431792 431792 42.3 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0%2C72%2C4%2C69:27 scaffold257 SAMTools SNP 431916 431916 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold257 SAMTools SNP 432682 432682 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold257 SAMTools SNP 433003 433003 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 433070 433070 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C72%2C0:99 scaffold257 SAMTools SNP 439722 439722 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold257 SAMTools SNP 440678 440678 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 441163 441163 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold257 SAMTools SNP 441175 441175 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C24%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C6.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold257 SAMTools SNP 442531 442531 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold257 SAMTools SNP 443568 443568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold257 SAMTools SNP 443619 443619 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.084%2C0.18%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold257 SAMTools SNP 444294 444294 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold257 SAMTools SNP 444605 444605 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.57%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold257 SAMTools SNP 444614 444614 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.49%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold257 SAMTools SNP 445593 445593 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold257 SAMTools SNP 446438 446438 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C65:68 scaffold257 SAMTools SNP 446498 446498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold257 SAMTools SNP 446952 446952 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 447268 447268 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.54%2C0.072%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold257 SAMTools SNP 447864 447864 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 447876 447876 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 447903 447903 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 447924 447924 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C1%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.011%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold257 SAMTools SNP 447978 447978 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C3%2C5%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold257 SAMTools SNP 449168 449168 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.099%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 449807 449807 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold257 SAMTools SNP 449855 449855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C13%2C80%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 450364 450364 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C74%2C4%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 451011 451011 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold257 SAMTools SNP 451032 451032 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold257 SAMTools SNP 451647 451647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold257 SAMTools SNP 451650 451650 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold257 SAMTools SNP 451704 451704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold257 SAMTools SNP 451719 451719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold257 SAMTools SNP 452352 452352 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 460143 460143 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 460161 460161 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold257 SAMTools SNP 462048 462048 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 463037 463037 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 463544 463544 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 465274 465274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold257 SAMTools SNP 465315 465315 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold257 SAMTools SNP 474791 474791 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold257 SAMTools SNP 474970 474970 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C2.4e-11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C76:72 scaffold257 SAMTools SNP 475212 475212 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.005%2C3.1e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C242:34 scaffold257 SAMTools SNP 475483 475483 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.14%2C2.5e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C154:47 scaffold257 SAMTools SNP 475856 475856 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C17%3BMQ%3D44%3BFQ%3D52%3BPV4%3D1%2C2e-29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C131:82 scaffold257 SAMTools SNP 477692 477692 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.27%2C6.6e-12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C218:66 scaffold257 SAMTools SNP 480145 480145 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D40%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C195:44 scaffold257 SAMTools SNP 480146 480146 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D40%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C201:52 scaffold257 SAMTools SNP 481627 481627 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0079%2C4e-15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C154:63 scaffold257 SAMTools SNP 486105 486105 29.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold257 SAMTools SNP 486744 486744 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 486989 486989 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 487153 487153 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C12%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 487732 487732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C17%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold257 SAMTools SNP 487774 487774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold257 SAMTools SNP 487816 487816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold257 SAMTools SNP 487818 487818 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold257 SAMTools SNP 488679 488679 17.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold257 SAMTools SNP 488693 488693 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.8e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C166:59 scaffold257 SAMTools SNP 488709 488709 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold257 SAMTools SNP 512455 512455 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold257 SAMTools SNP 512524 512524 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 512818 512818 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold257 SAMTools SNP 514399 514399 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D9.5e-06%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold257 SAMTools SNP 514459 514459 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C22%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D4.5e-06%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold257 SAMTools SNP 515120 515120 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 516044 516044 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C4%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.37%2C1%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold257 SAMTools SNP 516061 516061 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.14%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold257 SAMTools SNP 516890 516890 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C114%2C0:99 scaffold257 SAMTools SNP 517066 517066 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0098%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold257 SAMTools SNP 517281 517281 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.00067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold257 SAMTools SNP 517307 517307 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D34%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0015%2C0.004%2C1%2C6.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold257 SAMTools SNP 517346 517346 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold257 SAMTools SNP 518261 518261 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 518343 518343 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold257 SAMTools SNP 519906 519906 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold257 SAMTools SNP 521428 521428 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold257 SAMTools SNP 521701 521701 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold257 SAMTools SNP 521764 521764 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 521770 521770 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 522675 522675 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 524378 524378 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C21%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.56%2C4.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold257 SAMTools SNP 524789 524789 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold257 SAMTools SNP 525039 525039 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C10%2C2%3BMQ%3D48%3BFQ%3D182%3BPV4%3D1%2C0.048%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold257 SAMTools SNP 525050 525050 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C19%2C3%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.03%2C0.00065%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 525859 525859 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C0%2C10%3BMQ%3D48%3BFQ%3D30%3BPV4%3D0.57%2C6.6e-06%2C0.46%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold257 SAMTools SNP 529133 529133 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C40%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold257 SAMTools SNP 529162 529162 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold257 SAMTools SNP 530615 530615 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 531204 531204 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C129:99 scaffold257 SAMTools SNP 539031 539031 59.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold257 SAMTools SNP 539041 539041 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 539118 539118 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 539175 539175 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold257 SAMTools SNP 539630 539630 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold257 SAMTools SNP 539678 539678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold257 SAMTools SNP 540215 540215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold257 SAMTools SNP 540253 540253 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold257 SAMTools SNP 540275 540275 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold257 SAMTools SNP 543243 543243 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 544885 544885 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C0%2C16%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold257 SAMTools SNP 544931 544931 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.17%2C3e-05%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold257 SAMTools SNP 545875 545875 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold257 SAMTools SNP 545926 545926 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 545940 545940 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold257 SAMTools SNP 547209 547209 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold257 SAMTools SNP 547575 547575 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C13%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.23%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C135:99 scaffold257 SAMTools SNP 547949 547949 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C17%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold257 SAMTools SNP 549299 549299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.11%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 549335 549335 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.54%2C6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold257 SAMTools SNP 549413 549413 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C51%2C0:99 scaffold257 SAMTools SNP 549483 549483 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold257 SAMTools SNP 549744 549744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 564942 564942 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold257 SAMTools SNP 565637 565637 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C37%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.56%2C1.1e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold257 SAMTools SNP 575796 575796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 583568 583568 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold257 SAMTools SNP 597257 597257 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold257 SAMTools SNP 597270 597270 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold257 SAMTools SNP 597280 597280 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold257 SAMTools SNP 597286 597286 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold257 SAMTools SNP 611857 611857 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold257 SAMTools SNP 623439 623439 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold257 SAMTools SNP 623586 623586 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C87%2C0:99 scaffold257 SAMTools SNP 649729 649729 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C7%2C30%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.47%2C1.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold257 SAMTools SNP 654564 654564 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold257 SAMTools SNP 667624 667624 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold257 SAMTools SNP 723270 723270 39.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold257 SAMTools SNP 747975 747975 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 766372 766372 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 766433 766433 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold257 SAMTools SNP 770558 770558 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold257 SAMTools SNP 784057 784057 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C24%2C0%2C18%3BMQ%3D50%3BFQ%3D50%3BPV4%3D8.8e-10%2C0.24%2C1%2C5.7e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold257 SAMTools SNP 784087 784087 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C41%2C0%2C24%3BMQ%3D50%3BFQ%3D60%3BPV4%3D2.4e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold257 SAMTools SNP 784108 784108 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C39%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-05%2C7.9e-46%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 784231 784231 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C33%2C58%3BMQ%3D50%3BFQ%3D71.5%3BPV4%3D1.5e-05%2C6.9e-56%2C1%2C5.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C108:99 scaffold257 SAMTools SNP 786082 786082 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.43%2C0.045%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C225:54 scaffold257 SAMTools SNP 786094 786094 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold257 SAMTools SNP 788059 788059 153 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold257 SAMTools SNP 792090 792090 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 793545 793545 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.1e-15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C171:54 scaffold257 SAMTools SNP 797510 797510 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C29%3BMQ%3D19%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C226%2C0:99 scaffold257 SAMTools SNP 799207 799207 5.85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D21%3BFQ%3D-29%3BPV4%3D1%2C0.22%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C2%2C0:3 scaffold257 SAMTools SNP 799208 799208 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C8%2C1%3BMQ%3D40%3BFQ%3D-35%3BPV4%3D0.003%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C8%2C0:14 scaffold257 SAMTools SNP 799812 799812 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C255%2C0:99 scaffold257 SAMTools SNP 799893 799893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C51%3BMQ%3D49%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold257 SAMTools SNP 800376 800376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C52%2C13%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 800694 800694 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C59%2C3%2C76%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.26%2C0.28%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 803144 803144 164 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C17%2C1%3BMQ%3D39%3BFQ%3D167%3BPV4%3D1%2C0.2%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C222:99 scaffold257 SAMTools SNP 803423 803423 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C20%2C2%3BMQ%3D46%3BFQ%3D205%3BPV4%3D1%2C0.095%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C239:99 scaffold257 SAMTools SNP 804837 804837 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 804925 804925 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 807916 807916 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C3%2C45%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 807931 807931 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 807989 807989 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C2%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 808639 808639 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C48%2C2%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 809035 809035 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold257 SAMTools SNP 809055 809055 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold257 SAMTools SNP 816906 816906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.26%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold257 SAMTools SNP 817366 817366 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.2%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold257 SAMTools SNP 828300 828300 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.21%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 828696 828696 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C20%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold257 SAMTools SNP 828742 828742 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 830423 830423 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold257 SAMTools SNP 834560 834560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.072%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 834791 834791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C63%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold257 SAMTools SNP 836100 836100 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold257 SAMTools SNP 839088 839088 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.58%2C4.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold257 SAMTools SNP 860200 860200 121 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C49%3BMQ%3D17%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C154%2C0%2C141%2C123%2C138:99 scaffold257 SAMTools SNP 864833 864833 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold257 SAMTools SNP 864854 864854 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold257 SAMTools SNP 864908 864908 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold257 SAMTools SNP 864920 864920 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.46%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold257 SAMTools SNP 865918 865918 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold257 SAMTools SNP 868631 868631 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold257 SAMTools SNP 873738 873738 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold257 SAMTools SNP 873775 873775 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold257 SAMTools SNP 895411 895411 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold257 SAMTools SNP 896029 896029 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold257 SAMTools SNP 896147 896147 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C34%2C9%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C1%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold257 SAMTools SNP 896416 896416 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C6.9e-05%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold257 SAMTools SNP 896692 896692 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C54%2C0:95 scaffold257 SAMTools SNP 897978 897978 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold257 SAMTools SNP 897998 897998 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold257 SAMTools SNP 898244 898244 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold257 SAMTools SNP 899058 899058 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 899331 899331 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.0012%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 899357 899357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold257 SAMTools SNP 899486 899486 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 899491 899491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C11%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold257 SAMTools SNP 901595 901595 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 901655 901655 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold257 SAMTools SNP 901670 901670 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C51%2C0:99 scaffold257 SAMTools SNP 904361 904361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C13%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold257 SAMTools SNP 905814 905814 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D188%3BPV4%3D3.9e-05%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold257 SAMTools SNP 905856 905856 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.00034%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold257 SAMTools SNP 908056 908056 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold257 SAMTools SNP 908759 908759 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.27%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold257 SAMTools SNP 908825 908825 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.69%2C5.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold257 SAMTools SNP 909341 909341 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold257 SAMTools SNP 909414 909414 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C15%2C0:27 scaffold257 SAMTools SNP 910707 910707 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold257 SAMTools SNP 911590 911590 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C250:67 scaffold257 SAMTools SNP 912354 912354 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C10%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0076%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold257 SAMTools SNP 912363 912363 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C7%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.097%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold257 SAMTools SNP 912505 912505 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C5%2C2%3BMQ%3D49%3BFQ%3D146%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold257 SAMTools SNP 912519 912519 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 912561 912561 61.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold257 SAMTools SNP 912569 912569 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold257 SAMTools SNP 913950 913950 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D47%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold257 SAMTools SNP 914220 914220 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold257 SAMTools SNP 914278 914278 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold257 SAMTools SNP 914304 914304 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold257 SAMTools SNP 914358 914358 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 914851 914851 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C16%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.59%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold257 SAMTools SNP 914925 914925 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold257 SAMTools SNP 915574 915574 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C7%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D8.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold257 SAMTools SNP 916447 916447 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C22%2C17%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.26%2C1.8e-32%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold257 SAMTools SNP 920416 920416 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C5%3BMQ%3D41%3BFQ%3D131%3BPV4%3D0.011%2C1%2C0.33%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C210:99 scaffold257 SAMTools SNP 921224 921224 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold257 SAMTools SNP 921322 921322 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C8%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C123:99 scaffold257 SAMTools SNP 921827 921827 26.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold257 SAMTools SNP 955702 955702 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 955711 955711 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 955747 955747 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 957110 957110 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 957169 957169 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 959011 959011 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold257 SAMTools SNP 959811 959811 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold257 SAMTools SNP 964895 964895 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 986088 986088 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1000226 1000226 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D673%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C255%2C0:99 scaffold257 SAMTools SNP 1000530 1000530 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C1%2C81%2C25%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D1%2C3.2e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C63%2C0:99 scaffold257 SAMTools SNP 1000912 1000912 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold257 SAMTools SNP 1001099 1001099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C290%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1001126 1001126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 1001168 1001168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C14%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold257 SAMTools SNP 1001386 1001386 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold257 SAMTools SNP 1001509 1001509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C261%2C204%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.44%2C1.2e-08%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1001593 1001593 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C239%2C27%2C249%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C2.5e-63%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1001870 1001870 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1001951 1001951 180 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D681%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C7%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C58%2C32%2C203%2C0%2C205:49 scaffold257 SAMTools SNP 1002101 1002101 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D923%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C322%2C89%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-10%2C0.0095%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1002288 1002288 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D728%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C114%2C205%2C347%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1002321 1002321 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D574%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C287%2C42%2C63%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold257 SAMTools SNP 1002327 1002327 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D554%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C292%2C42%2C68%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold257 SAMTools SNP 1002363 1002363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1002532 1002532 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C71%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C6e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C234:37 scaffold257 SAMTools SNP 1003665 1003665 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1003809 1003809 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold257 SAMTools SNP 1003948 1003948 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold257 SAMTools SNP 1005271 1005271 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold257 SAMTools SNP 1010924 1010924 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold257 SAMTools SNP 1010957 1010957 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold257 SAMTools SNP 1012730 1012730 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold257 SAMTools SNP 1012739 1012739 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold257 SAMTools SNP 1013411 1013411 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.2e-32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C194:46 scaffold257 SAMTools SNP 1013567 1013567 17.1 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C13%2C10%2C47%2C0%2C44:6 scaffold257 SAMTools SNP 1013756 1013756 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C19%2C2%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.2%2C6.3e-11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold257 SAMTools SNP 1013804 1013804 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C19%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.077%2C5.3e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold257 SAMTools SNP 1014041 1014041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1014467 1014467 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1014525 1014525 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1014531 1014531 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C7%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.61%2C3.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold257 SAMTools SNP 1014830 1014830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold257 SAMTools SNP 1014831 1014831 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C0.032%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold257 SAMTools SNP 1014981 1014981 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1014998 1014998 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 1015590 1015590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1015623 1015623 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold257 SAMTools SNP 1015889 1015889 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1016400 1016400 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.4%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold257 SAMTools SNP 1016401 1016401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold257 SAMTools SNP 1016530 1016530 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C42%2C0:80 scaffold257 SAMTools SNP 1016570 1016570 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold257 SAMTools SNP 1016576 1016576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold257 SAMTools SNP 1020338 1020338 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C113:99 scaffold257 SAMTools SNP 1020446 1020446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold257 SAMTools SNP 1020473 1020473 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.44%2C0.091%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C207:99 scaffold257 SAMTools SNP 1020687 1020687 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold257 SAMTools SNP 1020723 1020723 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold257 SAMTools SNP 1020780 1020780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold257 SAMTools SNP 1021063 1021063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold257 SAMTools SNP 1021174 1021174 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C214:67 scaffold257 SAMTools SNP 1021400 1021400 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.23%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold257 SAMTools SNP 1021418 1021418 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold257 SAMTools SNP 1021488 1021488 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold257 SAMTools SNP 1023859 1023859 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1081249 1081249 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold257 SAMTools SNP 1081544 1081544 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C36%2C0:69 scaffold257 SAMTools SNP 1081667 1081667 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold257 SAMTools SNP 1082045 1082045 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1082320 1082320 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1082348 1082348 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1083459 1083459 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.046%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold257 SAMTools SNP 1083681 1083681 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1083722 1083722 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold257 SAMTools SNP 1083918 1083918 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold257 SAMTools SNP 1083930 1083930 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold257 SAMTools SNP 1083959 1083959 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1083970 1083970 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold257 SAMTools SNP 1084106 1084106 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1e-08%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C153:89 scaffold257 SAMTools SNP 1084130 1084130 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.012%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold257 SAMTools SNP 1084363 1084363 18 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold257 SAMTools SNP 1084416 1084416 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C7.7e-11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C253:73 scaffold257 SAMTools SNP 1084851 1084851 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1084871 1084871 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1085393 1085393 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D1%2C0.0022%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold257 SAMTools SNP 1085402 1085402 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold257 SAMTools SNP 1086296 1086296 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold257 SAMTools SNP 1135535 1135535 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold257 SAMTools SNP 1135699 1135699 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C8e-11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C20:23 scaffold257 SAMTools SNP 1164872 1164872 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1279487 1279487 72.1 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold257 SAMTools SNP 1279782 1279782 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C72%2C3%2C21%3BMQ%3D43%3BFQ%3D65%3BPV4%3D0.12%2C0.0014%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold257 SAMTools SNP 1281178 1281178 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C0%3BMQ%3D27%3BFQ%3D56%3BPV4%3D0.13%2C0.017%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C134:86 scaffold257 SAMTools SNP 1281182 1281182 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D27%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C81%2C0:99 scaffold257 SAMTools SNP 1281199 1281199 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C1%3BMQ%3D35%3BFQ%3D107%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C143:99 scaffold257 SAMTools SNP 1282394 1282394 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1282411 1282411 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1291383 1291383 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 1292046 1292046 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold257 SAMTools SNP 1292078 1292078 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 1292108 1292108 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C54%2C0:99 scaffold257 SAMTools SNP 1292128 1292128 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C69%2C0:99 scaffold257 SAMTools SNP 1292222 1292222 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold257 SAMTools SNP 1292251 1292251 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.029%2C0.0026%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C129:86 scaffold257 SAMTools SNP 1292273 1292273 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold257 SAMTools SNP 1292276 1292276 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold257 SAMTools SNP 1292285 1292285 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1294303 1294303 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C15%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold257 SAMTools SNP 1294327 1294327 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold257 SAMTools SNP 1296412 1296412 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C24%2C0:45 scaffold257 SAMTools SNP 1296418 1296418 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D40%3BFQ%3D-32%3BPV4%3D0.018%2C0.078%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C5%2C0:9 scaffold257 SAMTools SNP 1296861 1296861 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold257 SAMTools SNP 1296881 1296881 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold257 SAMTools SNP 1296921 1296921 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold257 SAMTools SNP 1305587 1305587 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 1305946 1305946 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold257 SAMTools SNP 1335672 1335672 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1335819 1335819 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold257 SAMTools SNP 1341862 1341862 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold257 SAMTools SNP 1352574 1352574 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold257 SAMTools SNP 1359885 1359885 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold257 SAMTools SNP 1360011 1360011 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold257 SAMTools SNP 1362088 1362088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C32%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold257 SAMTools SNP 1362233 1362233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1362371 1362371 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold257 SAMTools SNP 1362379 1362379 60.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C86%2C80%2C94%2C0%2C88:10 scaffold257 SAMTools SNP 1363456 1363456 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold257 SAMTools SNP 1368221 1368221 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.45%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold257 SAMTools SNP 1368715 1368715 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.0087%2C2.4e-30%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold257 SAMTools SNP 1371841 1371841 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.25%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold257 SAMTools SNP 1371853 1371853 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold257 SAMTools SNP 1372217 1372217 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D5.42%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C31:34 scaffold257 SAMTools SNP 1372975 1372975 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold257 SAMTools SNP 1391626 1391626 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold257 SAMTools SNP 1393989 1393989 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2176%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C983%2C228%2C790%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-05%2C0.00025%2C0.14%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1394336 1394336 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1021%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C589%2C29%2C364%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1397623 1397623 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1397665 1397665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C417%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1398615 1398615 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1402174 1402174 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C16%2C3%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1402202 1402202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C48%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C3.9e-06%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1402219 1402219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold257 SAMTools SNP 1402696 1402696 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C57%2C0:99 scaffold257 SAMTools SNP 1415678 1415678 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold257 SAMTools SNP 1416099 1416099 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C1.1e-06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C226:34 scaffold257 SAMTools SNP 1416614 1416614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold257 SAMTools SNP 1418643 1418643 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold257 SAMTools SNP 1419154 1419154 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1419169 1419169 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1423230 1423230 34.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold257 SAMTools SNP 1427106 1427106 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold257 SAMTools SNP 1428010 1428010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1429816 1429816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 1430292 1430292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 1430403 1430403 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 1430441 1430441 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold257 SAMTools SNP 1430935 1430935 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C41%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold257 SAMTools SNP 1431101 1431101 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold257 SAMTools SNP 1436756 1436756 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold257 SAMTools SNP 1438987 1438987 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold257 SAMTools SNP 1438996 1438996 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold257 SAMTools SNP 1439047 1439047 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1442079 1442079 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold257 SAMTools SNP 1442082 1442082 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold257 SAMTools SNP 1442094 1442094 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1442569 1442569 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1449644 1449644 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold257 SAMTools SNP 1449659 1449659 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1449746 1449746 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold257 SAMTools SNP 1449785 1449785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold257 SAMTools SNP 1450499 1450499 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C13%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold257 SAMTools SNP 1450557 1450557 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold257 SAMTools SNP 1450577 1450577 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C1%2C20%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C8.6e-10%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold257 SAMTools SNP 1451031 1451031 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C20%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C193:99 scaffold257 SAMTools SNP 1451040 1451040 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold257 SAMTools SNP 1451115 1451115 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1451741 1451741 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1451778 1451778 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1451823 1451823 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1452114 1452114 29.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold257 SAMTools SNP 1453281 1453281 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C40%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold257 SAMTools SNP 1453533 1453533 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold257 SAMTools SNP 1453943 1453943 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C33%2C48%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.00014%2C0.19%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold257 SAMTools SNP 1454148 1454148 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C5%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.011%2C0.25%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1454166 1454166 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D24%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C39%2C0:75 scaffold257 SAMTools SNP 1454688 1454688 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D800%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C119%2C330%2C110%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1454700 1454700 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C4%2C65%2C5%3BMQ%3D23%3BFQ%3D215%3BPV4%3D0.73%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold257 SAMTools SNP 1455845 1455845 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold257 SAMTools SNP 1455907 1455907 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold257 SAMTools SNP 1455965 1455965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold257 SAMTools SNP 1456090 1456090 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold257 SAMTools SNP 1456206 1456206 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1456806 1456806 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold257 SAMTools SNP 1457105 1457105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C84%2C8%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1457129 1457129 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C72%2C6%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1457553 1457553 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C94%2C3%2C11%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold257 SAMTools SNP 1459155 1459155 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C13%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D4.1e-09%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold257 SAMTools SNP 1462266 1462266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C43%3BMQ%3D46%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold257 SAMTools SNP 1462776 1462776 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1462799 1462799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D672%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C119%2C176%2C126%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.012%2C0.056%2C0.27%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1463144 1463144 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D622%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C305%2C23%2C189%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1463261 1463261 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C49%3BMQ%3D32%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold257 SAMTools SNP 1463536 1463536 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C25%2C16%2C26%3BMQ%3D24%3BFQ%3D140%3BPV4%3D0.21%2C3.9e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C174:99 scaffold257 SAMTools SNP 1464096 1464096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold257 SAMTools SNP 1465841 1465841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C56%2C112%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C0.46%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1466253 1466253 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C26%2C122%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-14%2C1%2C1%2C3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold257 SAMTools SNP 1467173 1467173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C50%2C174%2C301%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold257 SAMTools SNP 1467699 1467699 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C563%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold257 SAMTools SNP 1467751 1467751 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C12%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold257 SAMTools SNP 1499911 1499911 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold257 SAMTools SNP 1509700 1509700 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold257 SAMTools SNP 1511219 1511219 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 25 25 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 1707 1707 10.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold258 SAMTools SNP 1781 1781 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold258 SAMTools SNP 2217 2217 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C190:99 scaffold258 SAMTools SNP 3203 3203 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D1%2C0.039%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C4%2C0:7 scaffold258 SAMTools SNP 11746 11746 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C42%2C0:81 scaffold258 SAMTools SNP 11968 11968 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold258 SAMTools SNP 12826 12826 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D35%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.11%2C2.4e-24%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold258 SAMTools SNP 13218 13218 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 13320 13320 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold258 SAMTools SNP 13676 13676 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 14778 14778 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 15144 15144 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 15243 15243 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold258 SAMTools SNP 15285 15285 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.33%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C227:99 scaffold258 SAMTools SNP 15484 15484 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.48%2C0.29%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold258 SAMTools SNP 15695 15695 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C19%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold258 SAMTools SNP 15707 15707 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold258 SAMTools SNP 15767 15767 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold258 SAMTools SNP 15854 15854 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C102:99 scaffold258 SAMTools SNP 15875 15875 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold258 SAMTools SNP 16243 16243 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.15%2C0.15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C185:99 scaffold258 SAMTools SNP 16296 16296 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold258 SAMTools SNP 16841 16841 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.43%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold258 SAMTools SNP 16871 16871 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C42%2C0:81 scaffold258 SAMTools SNP 16919 16919 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold258 SAMTools SNP 17426 17426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 17677 17677 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold258 SAMTools SNP 17696 17696 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold258 SAMTools SNP 19251 19251 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold258 SAMTools SNP 19262 19262 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.21%2C0.019%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold258 SAMTools SNP 19263 19263 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold258 SAMTools SNP 19269 19269 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C59:62 scaffold258 SAMTools SNP 19284 19284 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C232:57 scaffold258 SAMTools SNP 19436 19436 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold258 SAMTools SNP 20666 20666 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.66%2C5.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold258 SAMTools SNP 20801 20801 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C48%2C0:88 scaffold258 SAMTools SNP 28154 28154 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 42187 42187 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 48745 48745 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C5.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold258 SAMTools SNP 49138 49138 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold258 SAMTools SNP 49188 49188 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold258 SAMTools SNP 49387 49387 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C251:37 scaffold258 SAMTools SNP 54314 54314 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold258 SAMTools SNP 54365 54365 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold258 SAMTools SNP 54432 54432 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold258 SAMTools SNP 54444 54444 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.31%2C0.13%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold258 SAMTools SNP 55214 55214 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold258 SAMTools SNP 55793 55793 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.18%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold258 SAMTools SNP 55834 55834 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.32%2C4.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold258 SAMTools SNP 57332 57332 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold258 SAMTools SNP 57360 57360 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 57372 57372 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 57976 57976 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold258 SAMTools SNP 58002 58002 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C32:35 scaffold258 SAMTools SNP 58047 58047 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C217:34 scaffold258 SAMTools SNP 58330 58330 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold258 SAMTools SNP 58364 58364 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold258 SAMTools SNP 58544 58544 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold258 SAMTools SNP 58567 58567 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 59163 59163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold258 SAMTools SNP 59482 59482 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold258 SAMTools SNP 59499 59499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold258 SAMTools SNP 59688 59688 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold258 SAMTools SNP 59756 59756 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C89%2C7%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 60229 60229 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 61161 61161 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C0%2C46%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.013%2C1.6e-11%2C1%2C4.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold258 SAMTools SNP 62054 62054 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.28%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold258 SAMTools SNP 62133 62133 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.34%2C0.16%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold258 SAMTools SNP 62476 62476 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.16%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold258 SAMTools SNP 62501 62501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 63259 63259 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C13%2C8%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold258 SAMTools SNP 63789 63789 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold258 SAMTools SNP 63839 63839 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold258 SAMTools SNP 64448 64448 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 64481 64481 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold258 SAMTools SNP 64778 64778 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C24%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 64835 64835 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 64844 64844 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C0.067%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold258 SAMTools SNP 64853 64853 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.12%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold258 SAMTools SNP 65318 65318 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold258 SAMTools SNP 65384 65384 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.47%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold258 SAMTools SNP 65589 65589 22.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold258 SAMTools SNP 67887 67887 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C110:99 scaffold258 SAMTools SNP 67908 67908 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold258 SAMTools SNP 69277 69277 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold258 SAMTools SNP 69407 69407 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 70493 70493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 77924 77924 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold258 SAMTools SNP 81131 81131 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold258 SAMTools SNP 81197 81197 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C75%2C0:99 scaffold258 SAMTools SNP 81287 81287 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold258 SAMTools SNP 81649 81649 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold258 SAMTools SNP 81685 81685 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold258 SAMTools SNP 81817 81817 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold258 SAMTools SNP 93434 93434 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C7.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C176:86 scaffold258 SAMTools SNP 96012 96012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 96937 96937 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 96960 96960 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 97915 97915 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C74%2C0%2C28%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.02%2C4.5e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold258 SAMTools SNP 98483 98483 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C9%2C88%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 98737 98737 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold258 SAMTools SNP 98898 98898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C69%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold258 SAMTools SNP 98926 98926 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C31%2C12%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.00087%2C0.45%2C1%2C3.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold258 SAMTools SNP 99880 99880 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C19%2C23%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold258 SAMTools SNP 99934 99934 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 102048 102048 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C107%2C0%2C21%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C207:76 scaffold258 SAMTools SNP 102052 102052 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C107%2C0%2C21%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C207:76 scaffold258 SAMTools SNP 104137 104137 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold258 SAMTools SNP 105196 105196 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold258 SAMTools SNP 105393 105393 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold258 SAMTools SNP 105649 105649 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C15:18 scaffold258 SAMTools SNP 106008 106008 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold258 SAMTools SNP 106051 106051 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold258 SAMTools SNP 106458 106458 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C17%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold258 SAMTools SNP 106550 106550 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.015%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold258 SAMTools SNP 106575 106575 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C157:99 scaffold258 SAMTools SNP 107095 107095 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C5.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold258 SAMTools SNP 107523 107523 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.061%2C0.00086%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold258 SAMTools SNP 108022 108022 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold258 SAMTools SNP 111201 111201 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold258 SAMTools SNP 111465 111465 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.22%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold258 SAMTools SNP 111486 111486 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.43%2C0.0082%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold258 SAMTools SNP 111768 111768 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C72%2C19%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 112418 112418 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C33%2C40%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 113795 113795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 116613 116613 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold258 SAMTools SNP 117695 117695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C9%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold258 SAMTools SNP 118009 118009 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C46%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold258 SAMTools SNP 118151 118151 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold258 SAMTools SNP 118856 118856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C57%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 118955 118955 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold258 SAMTools SNP 119613 119613 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C17%2C22%2C1%3BMQ%3D44%3BFQ%3D222%3BPV4%3D0.0036%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold258 SAMTools SNP 119628 119628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C22%3BMQ%3D43%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold258 SAMTools SNP 119888 119888 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C6%2C24%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 120594 120594 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C5%2C14%3BMQ%3D42%3BFQ%3D90%3BPV4%3D0.042%2C1%2C2.3e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold258 SAMTools SNP 120618 120618 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C12%2C2%3BMQ%3D44%3BFQ%3D197%3BPV4%3D0.068%2C0.17%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold258 SAMTools SNP 121549 121549 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C35%2C19%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D0.36%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold258 SAMTools SNP 121563 121563 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold258 SAMTools SNP 121602 121602 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold258 SAMTools SNP 122285 122285 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold258 SAMTools SNP 122330 122330 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 122350 122350 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 123241 123241 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold258 SAMTools SNP 123250 123250 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold258 SAMTools SNP 124220 124220 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C106%2C0%2C54%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold258 SAMTools SNP 124265 124265 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C238:99 scaffold258 SAMTools SNP 124266 124266 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold258 SAMTools SNP 124268 124268 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C96:80 scaffold258 SAMTools SNP 124601 124601 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C240:99 scaffold258 SAMTools SNP 124805 124805 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C16%2C46%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 124862 124862 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C19%2C40%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 124988 124988 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C20%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 125000 125000 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C79%2C13%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 125259 125259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C27%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1.7e-33%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 125450 125450 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C7%2C62%2C46%3BMQ%3D50%3BFQ%3D-72%3BPV4%3D0.023%2C0.21%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold258 SAMTools SNP 125496 125496 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C56%2C26%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D0.00062%2C0.045%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C17%2C0:31 scaffold258 SAMTools SNP 125654 125654 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 125661 125661 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 126060 126060 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 126078 126078 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 126583 126583 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00047%2C0.01%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold258 SAMTools SNP 126651 126651 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold258 SAMTools SNP 126653 126653 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold258 SAMTools SNP 126672 126672 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C21:24 scaffold258 SAMTools SNP 127826 127826 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.47%2C0.022%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold258 SAMTools SNP 127859 127859 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold258 SAMTools SNP 131559 131559 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D38.4%3BPV4%3D1%2C0.058%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C74:68 scaffold258 SAMTools SNP 131571 131571 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 131754 131754 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold258 SAMTools SNP 131778 131778 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold258 SAMTools SNP 133514 133514 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C0%2C10%3BMQ%3D45%3BFQ%3D64%3BPV4%3D0.0067%2C1%2C1.3e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold258 SAMTools SNP 133531 133531 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C12%2C14%3BMQ%3D45%3BFQ%3D100%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold258 SAMTools SNP 133570 133570 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D48%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold258 SAMTools SNP 133633 133633 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold258 SAMTools SNP 133841 133841 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 133847 133847 14.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C9:12 scaffold258 SAMTools SNP 134107 134107 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold258 SAMTools SNP 134688 134688 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold258 SAMTools SNP 134893 134893 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.44%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C237:39 scaffold258 SAMTools SNP 135752 135752 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold258 SAMTools SNP 135962 135962 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold258 SAMTools SNP 136004 136004 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.012%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold258 SAMTools SNP 136024 136024 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold258 SAMTools SNP 137879 137879 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold258 SAMTools SNP 137890 137890 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold258 SAMTools SNP 138687 138687 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold258 SAMTools SNP 139339 139339 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold258 SAMTools SNP 144626 144626 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold258 SAMTools SNP 146800 146800 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold258 SAMTools SNP 146940 146940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold258 SAMTools SNP 147989 147989 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold258 SAMTools SNP 148231 148231 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 149030 149030 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold258 SAMTools SNP 149278 149278 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.09%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold258 SAMTools SNP 149631 149631 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold258 SAMTools SNP 150108 150108 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 150224 150224 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold258 SAMTools SNP 157963 157963 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold258 SAMTools SNP 168075 168075 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 173428 173428 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C111:88 scaffold258 SAMTools SNP 174058 174058 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold258 SAMTools SNP 174133 174133 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.081%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold258 SAMTools SNP 174145 174145 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold258 SAMTools SNP 174511 174511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold258 SAMTools SNP 174530 174530 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold258 SAMTools SNP 174692 174692 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 174740 174740 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.058%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold258 SAMTools SNP 174752 174752 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.55%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold258 SAMTools SNP 175307 175307 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold258 SAMTools SNP 175863 175863 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 175887 175887 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold258 SAMTools SNP 175899 175899 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C108:99 scaffold258 SAMTools SNP 176201 176201 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold258 SAMTools SNP 176237 176237 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold258 SAMTools SNP 176443 176443 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold258 SAMTools SNP 176734 176734 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold258 SAMTools SNP 176739 176739 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold258 SAMTools SNP 176766 176766 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold258 SAMTools SNP 177430 177430 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 177466 177466 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold258 SAMTools SNP 177472 177472 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold258 SAMTools SNP 177752 177752 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold258 SAMTools SNP 178158 178158 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 178260 178260 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.42%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 181919 181919 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C220:36 scaffold258 SAMTools SNP 181927 181927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold258 SAMTools SNP 182015 182015 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C16%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1.2e-05%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold258 SAMTools SNP 182515 182515 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C204:62 scaffold258 SAMTools SNP 182625 182625 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold258 SAMTools SNP 183209 183209 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold258 SAMTools SNP 183466 183466 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 185036 185036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold258 SAMTools SNP 185057 185057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold258 SAMTools SNP 185777 185777 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C27%2C0:51 scaffold258 SAMTools SNP 188593 188593 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold258 SAMTools SNP 188602 188602 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold258 SAMTools SNP 189053 189053 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold258 SAMTools SNP 189698 189698 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold258 SAMTools SNP 189746 189746 41.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold258 SAMTools SNP 193763 193763 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold258 SAMTools SNP 194505 194505 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 194562 194562 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 200791 200791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold258 SAMTools SNP 201392 201392 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D823%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C494%2C0%2C274%3BMQ%3D50%3BFQ%3D208%3BPV4%3D9.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold258 SAMTools SNP 201516 201516 18.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold258 SAMTools SNP 201600 201600 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold258 SAMTools SNP 205992 205992 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 206016 206016 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold258 SAMTools SNP 206562 206562 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 207944 207944 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 208828 208828 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 209593 209593 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold258 SAMTools SNP 209633 209633 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold258 SAMTools SNP 214744 214744 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 214936 214936 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold258 SAMTools SNP 216622 216622 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C111:36 scaffold258 SAMTools SNP 216983 216983 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 223837 223837 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C42%2C0:81 scaffold258 SAMTools SNP 224701 224701 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C33%2C0:63 scaffold258 SAMTools SNP 228538 228538 20.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold258 SAMTools SNP 228981 228981 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold258 SAMTools SNP 229129 229129 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold258 SAMTools SNP 229385 229385 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold258 SAMTools SNP 229899 229899 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 230126 230126 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold258 SAMTools SNP 230393 230393 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold258 SAMTools SNP 244884 244884 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 253420 253420 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 253606 253606 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 253669 253669 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 253953 253953 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 255350 255350 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 256753 256753 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1875%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D820%2C397%2C645%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 257216 257216 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6280%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2056%2C498%2C2117%2C1378%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 257252 257252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6074%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1994%2C664%2C2085%2C1331%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-31%2C7.7e-26%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 257392 257392 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2527%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1316%2C27%2C603%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold258 SAMTools SNP 257417 257417 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4213%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C4185%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold258 SAMTools SNP 261210 261210 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C242:99 scaffold258 SAMTools SNP 261253 261253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 261531 261531 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C35%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 261555 261555 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C17%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold258 SAMTools SNP 261801 261801 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold258 SAMTools SNP 261808 261808 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold258 SAMTools SNP 262280 262280 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold258 SAMTools SNP 262319 262319 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0048%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold258 SAMTools SNP 262347 262347 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold258 SAMTools SNP 262860 262860 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold258 SAMTools SNP 262875 262875 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 262938 262938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold258 SAMTools SNP 263486 263486 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C45%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold258 SAMTools SNP 263525 263525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 264216 264216 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold258 SAMTools SNP 264231 264231 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.047%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold258 SAMTools SNP 264249 264249 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C205:99 scaffold258 SAMTools SNP 264264 264264 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.0088%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C235:99 scaffold258 SAMTools SNP 264770 264770 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 267853 267853 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold258 SAMTools SNP 269741 269741 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 284754 284754 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 284810 284810 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 285193 285193 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold258 SAMTools SNP 285235 285235 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold258 SAMTools SNP 285293 285293 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C2.1e-14%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C85:88 scaffold258 SAMTools SNP 285516 285516 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 285523 285523 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 285826 285826 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold258 SAMTools SNP 329585 329585 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 329599 329599 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 334503 334503 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C9%2C5%3BMQ%3D47%3BFQ%3D60%3BPV4%3D1%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold258 SAMTools SNP 334517 334517 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C0%2C3%3BMQ%3D42%3BFQ%3D23%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold258 SAMTools SNP 337514 337514 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C53%2C4%2C17%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.73%2C0.00049%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold258 SAMTools SNP 338031 338031 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C60%2C0%2C23%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.034%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold258 SAMTools SNP 338350 338350 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold258 SAMTools SNP 338503 338503 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 339323 339323 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C239:99 scaffold258 SAMTools SNP 339374 339374 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C51%2C0:99 scaffold258 SAMTools SNP 339479 339479 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1.7e-08%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C236:80 scaffold258 SAMTools SNP 344864 344864 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold258 SAMTools SNP 349667 349667 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold258 SAMTools SNP 351650 351650 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold258 SAMTools SNP 356137 356137 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold258 SAMTools SNP 356209 356209 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold258 SAMTools SNP 357376 357376 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold258 SAMTools SNP 358689 358689 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 358706 358706 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C4%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold258 SAMTools SNP 358740 358740 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.00013%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 358881 358881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold258 SAMTools SNP 359257 359257 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold258 SAMTools SNP 359276 359276 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold258 SAMTools SNP 359315 359315 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold258 SAMTools SNP 359621 359621 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 360059 360059 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold258 SAMTools SNP 360081 360081 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold258 SAMTools SNP 360474 360474 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C222:62 scaffold258 SAMTools SNP 360489 360489 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold258 SAMTools SNP 360881 360881 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold258 SAMTools SNP 360898 360898 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold258 SAMTools SNP 361551 361551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold258 SAMTools SNP 362502 362502 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 364193 364193 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold258 SAMTools SNP 364215 364215 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold258 SAMTools SNP 364283 364283 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 364331 364331 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 364830 364830 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 365010 365010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.37%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 365211 365211 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0014%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C197:99 scaffold258 SAMTools SNP 365214 365214 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.00033%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold258 SAMTools SNP 365322 365322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 365373 365373 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold258 SAMTools SNP 366344 366344 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold258 SAMTools SNP 366368 366368 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.33%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold258 SAMTools SNP 368582 368582 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold258 SAMTools SNP 372322 372322 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C79:82 scaffold258 SAMTools SNP 378132 378132 42.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold258 SAMTools SNP 378381 378381 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D886%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C258%2C150%2C302%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1.2e-134%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 379257 379257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C308%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold258 SAMTools SNP 390489 390489 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold258 SAMTools SNP 390506 390506 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold258 SAMTools SNP 391082 391082 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C240:68 scaffold258 SAMTools SNP 405011 405011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold258 SAMTools SNP 405203 405203 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold258 SAMTools SNP 405215 405215 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C0%2C0:3 scaffold258 SAMTools SNP 406528 406528 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C108%2C0:99 scaffold258 SAMTools SNP 406766 406766 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold258 SAMTools SNP 406862 406862 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C135%2C0:99 scaffold258 SAMTools SNP 407066 407066 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C10%2C15%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C2.7e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold258 SAMTools SNP 407668 407668 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C25%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold258 SAMTools SNP 408177 408177 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold258 SAMTools SNP 408178 408178 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold258 SAMTools SNP 408625 408625 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold258 SAMTools SNP 409616 409616 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C60%2C0:99 scaffold258 SAMTools SNP 411106 411106 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold258 SAMTools SNP 411176 411176 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold258 SAMTools SNP 411789 411789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C139%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold258 SAMTools SNP 422462 422462 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 422464 422464 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 450261 450261 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C20%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C202:99 scaffold258 SAMTools SNP 450300 450300 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold258 SAMTools SNP 450393 450393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold258 SAMTools SNP 452046 452046 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.21%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold258 SAMTools SNP 452366 452366 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold258 SAMTools SNP 452954 452954 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold258 SAMTools SNP 453052 453052 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.068%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C229:99 scaffold258 SAMTools SNP 453053 453053 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.38%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C231:99 scaffold258 SAMTools SNP 453473 453473 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold258 SAMTools SNP 453474 453474 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold258 SAMTools SNP 453513 453513 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold258 SAMTools SNP 453843 453843 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 453860 453860 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 453934 453934 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 453998 453998 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold258 SAMTools SNP 454360 454360 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold258 SAMTools SNP 455374 455374 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C5.9e-08%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C204:99 scaffold258 SAMTools SNP 455446 455446 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C12%2C1%3BMQ%3D49%3BFQ%3D65%3BPV4%3D0.022%2C0.00033%2C0.3%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C129:95 scaffold258 SAMTools SNP 455850 455850 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.34%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C245:99 scaffold258 SAMTools SNP 455880 455880 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C228:37 scaffold258 SAMTools SNP 455893 455893 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D48%3BFQ%3D24%3BPV4%3D1%2C0.016%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C218:54 scaffold258 SAMTools SNP 455899 455899 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold258 SAMTools SNP 457000 457000 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold258 SAMTools SNP 457546 457546 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold258 SAMTools SNP 457550 457550 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.035%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold258 SAMTools SNP 457563 457563 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0064%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold258 SAMTools SNP 457892 457892 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 458430 458430 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C164:46 scaffold258 SAMTools SNP 458431 458431 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.38%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C134:65 scaffold258 SAMTools SNP 464384 464384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold258 SAMTools SNP 465488 465488 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.052%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold258 SAMTools SNP 465494 465494 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold258 SAMTools SNP 501934 501934 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold258 SAMTools SNP 502606 502606 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold258 SAMTools SNP 502786 502786 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold258 SAMTools SNP 508100 508100 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold258 SAMTools SNP 508710 508710 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold258 SAMTools SNP 508758 508758 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold258 SAMTools SNP 508761 508761 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold258 SAMTools SNP 508797 508797 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.009%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold258 SAMTools SNP 509890 509890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold258 SAMTools SNP 509986 509986 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold258 SAMTools SNP 510868 510868 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.041%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold258 SAMTools SNP 510882 510882 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 521235 521235 61.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold258 SAMTools SNP 521321 521321 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C182:88 scaffold258 SAMTools SNP 523621 523621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.47%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 526998 526998 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold258 SAMTools SNP 527516 527516 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C201:53 scaffold258 SAMTools SNP 528605 528605 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold258 SAMTools SNP 530772 530772 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C18%2C66%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 530783 530783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C20%2C36%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 531171 531171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold258 SAMTools SNP 532316 532316 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold258 SAMTools SNP 532331 532331 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.087%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold258 SAMTools SNP 532413 532413 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold258 SAMTools SNP 541707 541707 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold258 SAMTools SNP 541927 541927 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold258 SAMTools SNP 541966 541966 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold258 SAMTools SNP 542103 542103 49.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold258 SAMTools SNP 546595 546595 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 547060 547060 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold258 SAMTools SNP 547093 547093 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 547351 547351 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold258 SAMTools SNP 547582 547582 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold258 SAMTools SNP 547642 547642 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold258 SAMTools SNP 547697 547697 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C146:99 scaffold258 SAMTools SNP 548356 548356 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C126%2C0:99 scaffold258 SAMTools SNP 549555 549555 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold258 SAMTools SNP 550198 550198 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold258 SAMTools SNP 554476 554476 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold258 SAMTools SNP 555675 555675 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold258 SAMTools SNP 555677 555677 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold258 SAMTools SNP 555686 555686 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold258 SAMTools SNP 555798 555798 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold258 SAMTools SNP 556126 556126 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.011%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C32:35 scaffold258 SAMTools SNP 556229 556229 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 556368 556368 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold258 SAMTools SNP 558735 558735 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold258 SAMTools SNP 558763 558763 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold258 SAMTools SNP 559470 559470 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold258 SAMTools SNP 559672 559672 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.021%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold258 SAMTools SNP 560738 560738 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold258 SAMTools SNP 560759 560759 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold258 SAMTools SNP 560796 560796 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold258 SAMTools SNP 564861 564861 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C27%2C0:51 scaffold258 SAMTools SNP 565599 565599 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold260 SAMTools SNP 341 341 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold260 SAMTools SNP 427 427 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold260 SAMTools SNP 1728 1728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C17%2C13%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.63%2C0.47%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold260 SAMTools SNP 1982 1982 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D3.97%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C29:32 scaffold260 SAMTools SNP 14760 14760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold260 SAMTools SNP 15778 15778 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold260 SAMTools SNP 15785 15785 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold260 SAMTools SNP 16565 16565 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold260 SAMTools SNP 16679 16679 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold260 SAMTools SNP 18929 18929 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold260 SAMTools SNP 18930 18930 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.02%2C0.00069%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C234:78 scaffold260 SAMTools SNP 21751 21751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold260 SAMTools SNP 21771 21771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold260 SAMTools SNP 21784 21784 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.051%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold260 SAMTools SNP 29401 29401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C3%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00077%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold260 SAMTools SNP 29471 29471 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C11%2C44%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.19%2C1.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold260 SAMTools SNP 52005 52005 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C35:38 scaffold260 SAMTools SNP 52153 52153 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.49%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold260 SAMTools SNP 52218 52218 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold260 SAMTools SNP 52242 52242 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold260 SAMTools SNP 52550 52550 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold260 SAMTools SNP 52552 52552 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold260 SAMTools SNP 52631 52631 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold260 SAMTools SNP 52871 52871 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold260 SAMTools SNP 53042 53042 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.031%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold260 SAMTools SNP 53243 53243 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold260 SAMTools SNP 53253 53253 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C20%2C13%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold260 SAMTools SNP 53270 53270 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C20%2C13%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.15%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold260 SAMTools SNP 53340 53340 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.08%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold260 SAMTools SNP 53364 53364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold260 SAMTools SNP 53504 53504 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold260 SAMTools SNP 53609 53609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold260 SAMTools SNP 55026 55026 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold260 SAMTools SNP 55027 55027 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold260 SAMTools SNP 55052 55052 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold260 SAMTools SNP 55070 55070 131 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C38%2C5%2C151%2C0%2C145:63 scaffold260 SAMTools SNP 55151 55151 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold260 SAMTools SNP 55178 55178 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold260 SAMTools SNP 55179 55179 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold260 SAMTools SNP 55572 55572 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C16%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold260 SAMTools SNP 55632 55632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold260 SAMTools SNP 55941 55941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold260 SAMTools SNP 55952 55952 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.05%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold260 SAMTools SNP 55979 55979 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold260 SAMTools SNP 57126 57126 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold260 SAMTools SNP 58839 58839 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold260 SAMTools SNP 58840 58840 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold260 SAMTools SNP 58861 58861 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold260 SAMTools SNP 58863 58863 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold260 SAMTools SNP 62229 62229 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold264 SAMTools SNP 15273 15273 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold264 SAMTools SNP 19990 19990 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold264 SAMTools SNP 20062 20062 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold264 SAMTools SNP 20489 20489 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold264 SAMTools SNP 20561 20561 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold264 SAMTools SNP 21362 21362 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C0%2C12%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold264 SAMTools SNP 21418 21418 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold264 SAMTools SNP 21496 21496 62 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C160%2C255%2C0%2C245:45 scaffold264 SAMTools SNP 21520 21520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold264 SAMTools SNP 22406 22406 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C29%2C15%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.41%2C1.9e-93%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold264 SAMTools SNP 22466 22466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C59%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold264 SAMTools SNP 22478 22478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 22933 22933 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 22959 22959 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold264 SAMTools SNP 23034 23034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold264 SAMTools SNP 25111 25111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C16%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 25128 25128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C34%2C57%3BMQ%3D50%3BFQ%3D-130%3BPV4%3D0.3%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C103%2C0:99 scaffold264 SAMTools SNP 25730 25730 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.49%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C210:54 scaffold264 SAMTools SNP 25829 25829 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C48%2C0:93 scaffold264 SAMTools SNP 27073 27073 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold264 SAMTools SNP 41482 41482 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold264 SAMTools SNP 43324 43324 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0.0015%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold264 SAMTools SNP 48399 48399 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D4.1e-06%2C5.7e-06%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C240:90 scaffold264 SAMTools SNP 48433 48433 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00095%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C225:40 scaffold264 SAMTools SNP 48434 48434 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C38:41 scaffold264 SAMTools SNP 49178 49178 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 49209 49209 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 49233 49233 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.077%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold264 SAMTools SNP 49275 49275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold264 SAMTools SNP 49483 49483 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold264 SAMTools SNP 49498 49498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold264 SAMTools SNP 49567 49567 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C11%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.039%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold264 SAMTools SNP 49576 49576 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C11%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold264 SAMTools SNP 49861 49861 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold264 SAMTools SNP 50810 50810 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold264 SAMTools SNP 51721 51721 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold265 SAMTools SNP 18208 18208 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.0092%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C83:70 scaffold265 SAMTools SNP 65891 65891 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold266 SAMTools SNP 7097 7097 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 9280 9280 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold266 SAMTools SNP 12955 12955 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C161:39 scaffold266 SAMTools SNP 15742 15742 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold266 SAMTools SNP 46951 46951 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 46977 46977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 46999 46999 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 62475 62475 17.3 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C17%2C2%2C43%2C0%2C40:25 scaffold266 SAMTools SNP 62768 62768 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1100%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C670%2C430%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold266 SAMTools SNP 63110 63110 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1151%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C402%2C27%2C119%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold266 SAMTools SNP 64502 64502 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1739%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D550%2C408%2C433%2C338%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 82480 82480 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold266 SAMTools SNP 96850 96850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 96922 96922 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 103582 103582 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold266 SAMTools SNP 105707 105707 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 105885 105885 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold266 SAMTools SNP 105891 105891 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold266 SAMTools SNP 105927 105927 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C127:53 scaffold266 SAMTools SNP 106127 106127 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold266 SAMTools SNP 106263 106263 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold266 SAMTools SNP 106969 106969 48.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold266 SAMTools SNP 107091 107091 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold266 SAMTools SNP 107544 107544 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.29%2C2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold266 SAMTools SNP 107709 107709 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C74:77 scaffold266 SAMTools SNP 109307 109307 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C39%2C0:75 scaffold266 SAMTools SNP 110368 110368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C34%2C27%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 110404 110404 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C27%2C126%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 110407 110407 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C18%2C79%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 110910 110910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C41%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 112351 112351 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C8.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold266 SAMTools SNP 112412 112412 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold266 SAMTools SNP 112901 112901 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold266 SAMTools SNP 113456 113456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.49%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 114323 114323 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C15%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold266 SAMTools SNP 114358 114358 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 117110 117110 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C20%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 117531 117531 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold266 SAMTools SNP 117566 117566 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 117918 117918 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 118012 118012 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.015%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C238:99 scaffold266 SAMTools SNP 118021 118021 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.015%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C238:99 scaffold266 SAMTools SNP 118024 118024 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C218:99 scaffold266 SAMTools SNP 118038 118038 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 118050 118050 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold266 SAMTools SNP 119360 119360 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D41%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold266 SAMTools SNP 119376 119376 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D34%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C60%2C0:99 scaffold266 SAMTools SNP 119415 119415 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C20%3BMQ%3D39%3BFQ%3D108%3BPV4%3D0.3%2C0.46%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold266 SAMTools SNP 124013 124013 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C23%2C33%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold266 SAMTools SNP 124379 124379 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C24%3BMQ%3D48%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold266 SAMTools SNP 125028 125028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold266 SAMTools SNP 125139 125139 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C138%2C0:99 scaffold266 SAMTools SNP 130933 130933 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold266 SAMTools SNP 130965 130965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold266 SAMTools SNP 130971 130971 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C5.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C222:62 scaffold266 SAMTools SNP 133145 133145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C52%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold266 SAMTools SNP 136868 136868 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold266 SAMTools SNP 140220 140220 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.34%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C251:99 scaffold266 SAMTools SNP 140321 140321 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C0%2C22%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.022%2C6.4e-21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold266 SAMTools SNP 140669 140669 65 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C15%2C6%2C94%2C0%2C91:16 scaffold266 SAMTools SNP 143311 143311 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold266 SAMTools SNP 143416 143416 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 144087 144087 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C24%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold266 SAMTools SNP 144162 144162 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C25%2C1%2C13%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0056%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold266 SAMTools SNP 145222 145222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C18%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold266 SAMTools SNP 145235 145235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold266 SAMTools SNP 149620 149620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 149629 149629 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 216282 216282 31.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold266 SAMTools SNP 223105 223105 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold266 SAMTools SNP 229705 229705 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold266 SAMTools SNP 229741 229741 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold266 SAMTools SNP 236879 236879 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold266 SAMTools SNP 237307 237307 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold266 SAMTools SNP 237379 237379 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold266 SAMTools SNP 241832 241832 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold266 SAMTools SNP 267508 267508 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold266 SAMTools SNP 277544 277544 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold266 SAMTools SNP 336751 336751 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold266 SAMTools SNP 346979 346979 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold266 SAMTools SNP 352617 352617 28.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold266 SAMTools SNP 352940 352940 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C114%2C0:99 scaffold267 SAMTools SNP 3338 3338 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold267 SAMTools SNP 3354 3354 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold267 SAMTools SNP 5170 5170 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold267 SAMTools SNP 5553 5553 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold267 SAMTools SNP 5936 5936 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold267 SAMTools SNP 6015 6015 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold267 SAMTools SNP 8159 8159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C13%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold267 SAMTools SNP 48166 48166 31.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold267 SAMTools SNP 91870 91870 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C76:78 scaffold267 SAMTools SNP 100960 100960 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold267 SAMTools SNP 112921 112921 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold267 SAMTools SNP 124286 124286 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 153272 153272 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold267 SAMTools SNP 154411 154411 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold267 SAMTools SNP 154415 154415 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold267 SAMTools SNP 155241 155241 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold267 SAMTools SNP 155618 155618 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 159587 159587 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold267 SAMTools SNP 166687 166687 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 167961 167961 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.22%2C0.0091%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold267 SAMTools SNP 195488 195488 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 196538 196538 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 196586 196586 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold267 SAMTools SNP 196603 196603 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold267 SAMTools SNP 212838 212838 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold267 SAMTools SNP 214233 214233 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold267 SAMTools SNP 214306 214306 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold267 SAMTools SNP 241950 241950 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold267 SAMTools SNP 241965 241965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold267 SAMTools SNP 245406 245406 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C60%2C0:99 scaffold267 SAMTools SNP 246212 246212 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold267 SAMTools SNP 247488 247488 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold267 SAMTools SNP 248279 248279 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 248284 248284 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 248389 248389 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 248393 248393 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C182:30 scaffold267 SAMTools SNP 249313 249313 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold267 SAMTools SNP 249358 249358 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.055%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold267 SAMTools SNP 249683 249683 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold267 SAMTools SNP 250653 250653 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold267 SAMTools SNP 250692 250692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold267 SAMTools SNP 254525 254525 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold267 SAMTools SNP 255426 255426 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C12%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D6.9e-06%2C1.5e-11%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold267 SAMTools SNP 257765 257765 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.1%2C0.0082%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold267 SAMTools SNP 257767 257767 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.093%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold267 SAMTools SNP 257778 257778 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.035%2C0.039%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold267 SAMTools SNP 259313 259313 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C27%2C0:51 scaffold267 SAMTools SNP 260593 260593 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.032%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold267 SAMTools SNP 262072 262072 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold267 SAMTools SNP 262981 262981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold267 SAMTools SNP 263081 263081 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold267 SAMTools SNP 263090 263090 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold267 SAMTools SNP 267573 267573 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 267610 267610 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold267 SAMTools SNP 268010 268010 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold267 SAMTools SNP 268085 268085 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold267 SAMTools SNP 268094 268094 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold267 SAMTools SNP 269152 269152 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1.1e-05%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C71:74 scaffold267 SAMTools SNP 270528 270528 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold267 SAMTools SNP 270788 270788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold267 SAMTools SNP 270813 270813 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.4%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold267 SAMTools SNP 282780 282780 29.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold267 SAMTools SNP 283274 283274 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 285816 285816 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold267 SAMTools SNP 286827 286827 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.3%2C0.054%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold267 SAMTools SNP 288246 288246 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C204:99 scaffold267 SAMTools SNP 288247 288247 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold267 SAMTools SNP 288249 288249 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C217:99 scaffold267 SAMTools SNP 288966 288966 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold267 SAMTools SNP 289331 289331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C216%2C5%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold267 SAMTools SNP 290067 290067 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold267 SAMTools SNP 294529 294529 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.046%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold267 SAMTools SNP 294563 294563 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C222:51 scaffold267 SAMTools SNP 294565 294565 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C21%2C0:39 scaffold267 SAMTools SNP 304146 304146 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold267 SAMTools SNP 304153 304153 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold267 SAMTools SNP 317772 317772 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C18%3BMQ%3D50%3BFQ%3D212%3BPV4%3D8.7e-08%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold267 SAMTools SNP 317787 317787 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D5.5e-05%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold267 SAMTools SNP 319405 319405 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold267 SAMTools SNP 324199 324199 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C41%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold267 SAMTools SNP 338222 338222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 342743 342743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 342824 342824 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.12%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C229:99 scaffold267 SAMTools SNP 344724 344724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C36%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold267 SAMTools SNP 353295 353295 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C40%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 353388 353388 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C29%2C8%2C6%3BMQ%3D48%3BFQ%3D205%3BPV4%3D0.77%2C0.29%2C0.12%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold267 SAMTools SNP 355890 355890 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C23%2C62%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 355904 355904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C23%2C125%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.037%2C3.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 356365 356365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C80%2C1%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold267 SAMTools SNP 356407 356407 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C0%2C17%3BMQ%3D50%3BFQ%3D170%3BPV4%3D3e-08%2C0.14%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold267 SAMTools SNP 359123 359123 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C46%2C5%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C9.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold267 SAMTools SNP 359222 359222 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C45%2C4%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.48%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold267 SAMTools SNP 359660 359660 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.083%2C0.00012%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold267 SAMTools SNP 359699 359699 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C20%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1e-26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C251:99 scaffold267 SAMTools SNP 365451 365451 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold267 SAMTools SNP 365571 365571 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold267 SAMTools SNP 365967 365967 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold267 SAMTools SNP 366016 366016 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C54:57 scaffold267 SAMTools SNP 375223 375223 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 375232 375232 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold267 SAMTools SNP 376206 376206 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold267 SAMTools SNP 376230 376230 144 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C47%2C35%2C171%2C0%2C168:21 scaffold267 SAMTools SNP 376245 376245 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold267 SAMTools SNP 376704 376704 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold267 SAMTools SNP 376746 376746 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold267 SAMTools SNP 383205 383205 157 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C20%3BMQ%3D50%3BFQ%3D154%3BPV4%3D2.4e-05%2C2.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C182:99 scaffold267 SAMTools SNP 386759 386759 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold267 SAMTools SNP 386807 386807 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.044%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold267 SAMTools SNP 387287 387287 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold267 SAMTools SNP 387326 387326 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold267 SAMTools SNP 387611 387611 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.5%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C109:99 scaffold267 SAMTools SNP 387738 387738 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C41:44 scaffold267 SAMTools SNP 388086 388086 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 388242 388242 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 388299 388299 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold267 SAMTools SNP 388668 388668 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold267 SAMTools SNP 388866 388866 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold267 SAMTools SNP 389276 389276 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold267 SAMTools SNP 389283 389283 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold267 SAMTools SNP 389821 389821 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold267 SAMTools SNP 389939 389939 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold267 SAMTools SNP 391602 391602 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold267 SAMTools SNP 394532 394532 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.63%2C0.34%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold267 SAMTools SNP 394623 394623 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold267 SAMTools SNP 399836 399836 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold267 SAMTools SNP 402575 402575 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold267 SAMTools SNP 402593 402593 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold267 SAMTools SNP 403027 403027 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C166:76 scaffold267 SAMTools SNP 403257 403257 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold267 SAMTools SNP 404236 404236 19.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold267 SAMTools SNP 404360 404360 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold267 SAMTools SNP 428076 428076 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold267 SAMTools SNP 428081 428081 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold267 SAMTools SNP 436581 436581 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold267 SAMTools SNP 442210 442210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold267 SAMTools SNP 442240 442240 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.059%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold267 SAMTools SNP 458679 458679 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold267 SAMTools SNP 458694 458694 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold267 SAMTools SNP 461407 461407 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold267 SAMTools SNP 461412 461412 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold267 SAMTools SNP 489507 489507 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold267 SAMTools SNP 493107 493107 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold267 SAMTools SNP 493124 493124 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold267 SAMTools SNP 505024 505024 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold267 SAMTools SNP 505287 505287 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold267 SAMTools SNP 517844 517844 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold267 SAMTools SNP 530372 530372 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold267 SAMTools SNP 532177 532177 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold268 SAMTools SNP 3152 3152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold268 SAMTools SNP 3235 3235 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold268 SAMTools SNP 15517 15517 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold268 SAMTools SNP 15555 15555 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold268 SAMTools SNP 15891 15891 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C132:99 scaffold268 SAMTools SNP 15916 15916 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold268 SAMTools SNP 16213 16213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold268 SAMTools SNP 17970 17970 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C31%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold268 SAMTools SNP 18048 18048 222 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0%2C255%2C30%2C253:99 scaffold268 SAMTools SNP 18347 18347 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold268 SAMTools SNP 18449 18449 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold268 SAMTools SNP 19696 19696 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C34%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold268 SAMTools SNP 19786 19786 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold268 SAMTools SNP 20829 20829 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D63%3BPV4%3D1%2C0.06%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C205:93 scaffold268 SAMTools SNP 20925 20925 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C5%2C3%3BMQ%3D47%3BFQ%3D22%3BPV4%3D0.026%2C3.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold268 SAMTools SNP 20948 20948 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold268 SAMTools SNP 60569 60569 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C39%2C0:74 scaffold268 SAMTools SNP 107660 107660 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold268 SAMTools SNP 107669 107669 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold268 SAMTools SNP 108552 108552 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C176:99 scaffold268 SAMTools SNP 108569 108569 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold268 SAMTools SNP 109246 109246 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold268 SAMTools SNP 109286 109286 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold268 SAMTools SNP 112162 112162 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold268 SAMTools SNP 112181 112181 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold268 SAMTools SNP 112384 112384 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold268 SAMTools SNP 112639 112639 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold268 SAMTools SNP 112696 112696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold268 SAMTools SNP 113071 113071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold268 SAMTools SNP 113107 113107 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C26:29 scaffold268 SAMTools SNP 113366 113366 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold268 SAMTools SNP 113396 113396 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold268 SAMTools SNP 113599 113599 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold268 SAMTools SNP 119262 119262 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold269 SAMTools SNP 922 922 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 987 987 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 1016 1016 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 1533 1533 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 2411 2411 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 2825 2825 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 2935 2935 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold269 SAMTools SNP 12070 12070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 12224 12224 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 12292 12292 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 14737 14737 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 15440 15440 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold269 SAMTools SNP 15470 15470 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold269 SAMTools SNP 15524 15524 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.002%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C142:93 scaffold269 SAMTools SNP 16037 16037 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C32:35 scaffold269 SAMTools SNP 16076 16076 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.35%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold269 SAMTools SNP 16099 16099 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 16175 16175 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 16184 16184 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 16522 16522 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C1%2C4%3BMQ%3D49%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold269 SAMTools SNP 16536 16536 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.048%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold269 SAMTools SNP 16645 16645 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 16660 16660 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold269 SAMTools SNP 17063 17063 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold269 SAMTools SNP 17235 17235 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold269 SAMTools SNP 17561 17561 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold269 SAMTools SNP 17599 17599 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold269 SAMTools SNP 17736 17736 78.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold269 SAMTools SNP 18019 18019 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold269 SAMTools SNP 18277 18277 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold269 SAMTools SNP 18361 18361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold269 SAMTools SNP 19975 19975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C34%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold269 SAMTools SNP 26052 26052 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C215:39 scaffold269 SAMTools SNP 26642 26642 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold269 SAMTools SNP 26846 26846 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold269 SAMTools SNP 27307 27307 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold269 SAMTools SNP 28269 28269 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold269 SAMTools SNP 28287 28287 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 28311 28311 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 28351 28351 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 28383 28383 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 28824 28824 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold269 SAMTools SNP 30125 30125 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold269 SAMTools SNP 32077 32077 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold269 SAMTools SNP 32423 32423 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold269 SAMTools SNP 33040 33040 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.015%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold269 SAMTools SNP 33452 33452 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.031%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C169:42 scaffold269 SAMTools SNP 33467 33467 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 33791 33791 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 34328 34328 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold269 SAMTools SNP 35453 35453 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold269 SAMTools SNP 35471 35471 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold269 SAMTools SNP 35492 35492 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold269 SAMTools SNP 37796 37796 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.054%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold269 SAMTools SNP 38195 38195 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 38361 38361 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.045%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 51885 51885 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.2e-39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C180:77 scaffold269 SAMTools SNP 52646 52646 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C11%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.73%2C2.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold269 SAMTools SNP 53777 53777 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold269 SAMTools SNP 53778 53778 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold269 SAMTools SNP 53934 53934 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold269 SAMTools SNP 57813 57813 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C38%2C119%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-14%2C0.049%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 58016 58016 9.31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold269 SAMTools SNP 59587 59587 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D232%2C5%2C151%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-10%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 59742 59742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C114%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 59799 59799 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C15%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold269 SAMTools SNP 59814 59814 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C30%2C0:57 scaffold269 SAMTools SNP 59986 59986 90.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D834%3BVDB%3D0.0394%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C2:5 scaffold269 SAMTools SNP 60365 60365 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold269 SAMTools SNP 63589 63589 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C278%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 63595 63595 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C218%2C6%2C75%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold269 SAMTools SNP 67881 67881 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.19%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold269 SAMTools SNP 67917 67917 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold269 SAMTools SNP 70223 70223 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.00016%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold269 SAMTools SNP 70232 70232 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold269 SAMTools SNP 70269 70269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 71523 71523 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold269 SAMTools SNP 72856 72856 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 72875 72875 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold269 SAMTools SNP 88399 88399 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 88406 88406 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold269 SAMTools SNP 97024 97024 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C21%2C0:39 scaffold269 SAMTools SNP 98755 98755 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold269 SAMTools SNP 98758 98758 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold269 SAMTools SNP 99458 99458 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold269 SAMTools SNP 99472 99472 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold269 SAMTools SNP 99752 99752 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold269 SAMTools SNP 100968 100968 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold269 SAMTools SNP 101001 101001 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold269 SAMTools SNP 101040 101040 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold269 SAMTools SNP 101209 101209 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.015%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C221:99 scaffold269 SAMTools SNP 102144 102144 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold269 SAMTools SNP 102237 102237 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold269 SAMTools SNP 102683 102683 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 108182 108182 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold269 SAMTools SNP 108756 108756 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold269 SAMTools SNP 117649 117649 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold269 SAMTools SNP 117698 117698 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold269 SAMTools SNP 117710 117710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold269 SAMTools SNP 117986 117986 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 118681 118681 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 119114 119114 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C20%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold269 SAMTools SNP 119165 119165 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold269 SAMTools SNP 119536 119536 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.011%2C0.0001%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold269 SAMTools SNP 119570 119570 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold269 SAMTools SNP 119833 119833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold269 SAMTools SNP 124618 124618 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold269 SAMTools SNP 127489 127489 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold269 SAMTools SNP 132928 132928 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold269 SAMTools SNP 132976 132976 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 133618 133618 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D310%2C0%2C220%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.4%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 135350 135350 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C20%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold269 SAMTools SNP 135907 135907 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C1%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold269 SAMTools SNP 137157 137157 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold269 SAMTools SNP 141355 141355 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C7%2C25%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.14%2C3.7e-42%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold269 SAMTools SNP 141816 141816 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 142049 142049 145 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C38%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C157%2C0:99 scaffold269 SAMTools SNP 144324 144324 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C380%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 147191 147191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 147251 147251 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 147434 147434 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C62%2C70%2C43%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C5.8e-05%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 149241 149241 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold269 SAMTools SNP 149247 149247 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C70%2C0%2C19%3BMQ%3D48%3BFQ%3D24%3BPV4%3D0.58%2C1.5e-10%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold269 SAMTools SNP 150152 150152 32.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold269 SAMTools SNP 150378 150378 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold269 SAMTools SNP 151332 151332 27.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold269 SAMTools SNP 151367 151367 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold269 SAMTools SNP 151415 151415 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C17%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C163%2C0:99 scaffold269 SAMTools SNP 151476 151476 38.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold269 SAMTools SNP 152231 152231 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D0.33%2C0.023%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C41:41 scaffold269 SAMTools SNP 153053 153053 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold269 SAMTools SNP 153069 153069 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold269 SAMTools SNP 153112 153112 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold269 SAMTools SNP 154815 154815 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold269 SAMTools SNP 154866 154866 44.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold269 SAMTools SNP 154980 154980 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 155517 155517 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C0.36%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold269 SAMTools SNP 155567 155567 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.39%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold269 SAMTools SNP 155679 155679 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 155682 155682 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold269 SAMTools SNP 156138 156138 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C132:77 scaffold269 SAMTools SNP 156148 156148 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 156162 156162 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 157454 157454 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold269 SAMTools SNP 157461 157461 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold269 SAMTools SNP 158216 158216 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold269 SAMTools SNP 158252 158252 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 159385 159385 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold269 SAMTools SNP 159392 159392 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C65:68 scaffold269 SAMTools SNP 159630 159630 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C60:63 scaffold269 SAMTools SNP 166294 166294 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold269 SAMTools SNP 169395 169395 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold269 SAMTools SNP 169409 169409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 170167 170167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D557%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D197%2C55%2C238%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 170214 170214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C137%2C112%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.057%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 170728 170728 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D878%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D330%2C108%2C321%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C4.2e-255%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 171106 171106 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold269 SAMTools SNP 171177 171177 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold269 SAMTools SNP 171388 171388 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 171608 171608 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C10%2C242%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 172487 172487 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D730%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D242%2C120%2C233%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.012%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 177622 177622 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D358%2C0%2C317%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 180584 180584 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C77%2C28%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 180591 180591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C135%2C9%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 182163 182163 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold269 SAMTools SNP 182226 182226 13.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold269 SAMTools SNP 182244 182244 24.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold269 SAMTools SNP 182578 182578 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C7.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold269 SAMTools SNP 183758 183758 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold269 SAMTools SNP 183782 183782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold269 SAMTools SNP 183935 183935 56.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold269 SAMTools SNP 184181 184181 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold269 SAMTools SNP 184249 184249 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold269 SAMTools SNP 184278 184278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold269 SAMTools SNP 184454 184454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold269 SAMTools SNP 184636 184636 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold269 SAMTools SNP 185131 185131 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold269 SAMTools SNP 185132 185132 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.16%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold269 SAMTools SNP 185237 185237 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C52%2C10%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00074%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold269 SAMTools SNP 185856 185856 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C24%2C0:45 scaffold269 SAMTools SNP 186115 186115 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 186148 186148 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 186197 186197 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 187242 187242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C2%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold269 SAMTools SNP 187347 187347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 187956 187956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C16%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 189651 189651 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold269 SAMTools SNP 189688 189688 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C10%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C245:99 scaffold269 SAMTools SNP 189697 189697 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold269 SAMTools SNP 189698 189698 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 192375 192375 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 193575 193575 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold269 SAMTools SNP 197750 197750 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C160:39 scaffold269 SAMTools SNP 198451 198451 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 202200 202200 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 202237 202237 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold269 SAMTools SNP 203336 203336 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold269 SAMTools SNP 203409 203409 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold269 SAMTools SNP 203499 203499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold269 SAMTools SNP 204251 204251 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold269 SAMTools SNP 245286 245286 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 245312 245312 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold269 SAMTools SNP 269101 269101 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0094%2C4.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold269 SAMTools SNP 269106 269106 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.00091%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold269 SAMTools SNP 270108 270108 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 270172 270172 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.2%2C0.031%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold269 SAMTools SNP 270208 270208 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.007%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold269 SAMTools SNP 271334 271334 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.44%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold269 SAMTools SNP 271367 271367 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C8%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold269 SAMTools SNP 271927 271927 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold269 SAMTools SNP 271934 271934 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C18%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C8.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C238:93 scaffold269 SAMTools SNP 272674 272674 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold269 SAMTools SNP 272684 272684 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold269 SAMTools SNP 272895 272895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C43%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 273055 273055 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 273088 273088 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold269 SAMTools SNP 273132 273132 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 273345 273345 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 273925 273925 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 274432 274432 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C112:54 scaffold269 SAMTools SNP 274788 274788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 274791 274791 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 274857 274857 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold269 SAMTools SNP 274862 274862 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold269 SAMTools SNP 274900 274900 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold269 SAMTools SNP 278503 278503 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C19%2C46%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 279347 279347 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C54%2C4%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 279374 279374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold269 SAMTools SNP 282956 282956 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 283814 283814 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C28%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C166%2C0:99 scaffold269 SAMTools SNP 283862 283862 54.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold269 SAMTools SNP 283892 283892 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold269 SAMTools SNP 284000 284000 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold269 SAMTools SNP 286063 286063 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold269 SAMTools SNP 286091 286091 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.018%2C2.5e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C104:59 scaffold269 SAMTools SNP 289227 289227 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold269 SAMTools SNP 289571 289571 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 289636 289636 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.3%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold269 SAMTools SNP 289640 289640 96 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.084%2C0.0016%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold269 SAMTools SNP 290060 290060 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold269 SAMTools SNP 290447 290447 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold269 SAMTools SNP 290685 290685 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0039%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold269 SAMTools SNP 290693 290693 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold269 SAMTools SNP 290697 290697 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold269 SAMTools SNP 290706 290706 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold269 SAMTools SNP 290861 290861 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold269 SAMTools SNP 290876 290876 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold269 SAMTools SNP 291260 291260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold269 SAMTools SNP 291265 291265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold269 SAMTools SNP 291365 291365 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 292947 292947 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold269 SAMTools SNP 293152 293152 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 293164 293164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 293367 293367 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C12%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 293954 293954 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 293999 293999 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C9%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.57%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold269 SAMTools SNP 294000 294000 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C9%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.57%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold269 SAMTools SNP 294008 294008 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C36%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold269 SAMTools SNP 295034 295034 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold269 SAMTools SNP 295052 295052 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold269 SAMTools SNP 296028 296028 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold269 SAMTools SNP 297237 297237 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 297660 297660 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 297965 297965 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold269 SAMTools SNP 297974 297974 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold269 SAMTools SNP 303816 303816 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold269 SAMTools SNP 317704 317704 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold269 SAMTools SNP 322873 322873 11.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold269 SAMTools SNP 323657 323657 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C7%2C3%3BMQ%3D43%3BFQ%3D-45%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold269 SAMTools SNP 336973 336973 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C12%3BMQ%3D28%3BFQ%3D77%3BPV4%3D1%2C1%2C0.14%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C137:99 scaffold269 SAMTools SNP 337535 337535 21.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold269 SAMTools SNP 357263 357263 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 363316 363316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold269 SAMTools SNP 379810 379810 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold269 SAMTools SNP 380155 380155 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C21:24 scaffold269 SAMTools SNP 380174 380174 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold269 SAMTools SNP 380285 380285 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C30%2C0:57 scaffold269 SAMTools SNP 380600 380600 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C210%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C255%2C0:99 scaffold269 SAMTools SNP 380738 380738 6.99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D446%3BVDB%3D0.0115%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-5.6%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C23:27 scaffold269 SAMTools SNP 380806 380806 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold269 SAMTools SNP 381074 381074 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold269 SAMTools SNP 381422 381422 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C7%2C62%2C42%3BMQ%3D48%3BFQ%3D225%3BPV4%3D4.5e-10%2C1%2C4.1e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 381446 381446 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C17%2C82%2C51%3BMQ%3D48%3BFQ%3D225%3BPV4%3D4.7e-06%2C1%2C2.1e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 381712 381712 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C54%2C17%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-06%2C0.05%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 382187 382187 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C66%2C1%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-22%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 382972 382972 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 383020 383020 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold269 SAMTools SNP 383043 383043 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C7%2C17%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold269 SAMTools SNP 383244 383244 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold269 SAMTools SNP 389686 389686 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold269 SAMTools SNP 389687 389687 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.12%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold269 SAMTools SNP 390121 390121 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold269 SAMTools SNP 392499 392499 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold269 SAMTools SNP 393195 393195 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold269 SAMTools SNP 395295 395295 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold269 SAMTools SNP 395330 395330 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold269 SAMTools SNP 395684 395684 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C0.042%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C91:94 scaffold269 SAMTools SNP 396303 396303 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C152:99 scaffold269 SAMTools SNP 396345 396345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold269 SAMTools SNP 396806 396806 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold269 SAMTools SNP 399697 399697 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 399712 399712 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 400096 400096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 401230 401230 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold269 SAMTools SNP 402684 402684 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold269 SAMTools SNP 402695 402695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold269 SAMTools SNP 409018 409018 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 409037 409037 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold269 SAMTools SNP 428237 428237 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold269 SAMTools SNP 428248 428248 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold269 SAMTools SNP 428273 428273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 453318 453318 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 459481 459481 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.64%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold269 SAMTools SNP 460055 460055 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold269 SAMTools SNP 460064 460064 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold269 SAMTools SNP 460131 460131 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold269 SAMTools SNP 461028 461028 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0011%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold269 SAMTools SNP 461067 461067 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold269 SAMTools SNP 463709 463709 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C48%2C0:93 scaffold269 SAMTools SNP 463774 463774 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C42%2C0:79 scaffold269 SAMTools SNP 463817 463817 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold269 SAMTools SNP 463868 463868 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.35%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C28%2C0:53 scaffold269 SAMTools SNP 464623 464623 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0056%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold269 SAMTools SNP 465045 465045 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold269 SAMTools SNP 465084 465084 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.31%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold269 SAMTools SNP 465114 465114 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.09%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold269 SAMTools SNP 465780 465780 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold269 SAMTools SNP 465792 465792 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.19%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold269 SAMTools SNP 466312 466312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold269 SAMTools SNP 466348 466348 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.3%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold269 SAMTools SNP 466359 466359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold269 SAMTools SNP 466818 466818 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.009%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold269 SAMTools SNP 467002 467002 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold269 SAMTools SNP 512892 512892 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold269 SAMTools SNP 518574 518574 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D1%2C7.9e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold269 SAMTools SNP 550222 550222 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold269 SAMTools SNP 550592 550592 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.097%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold269 SAMTools SNP 553813 553813 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C4.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C196:99 scaffold269 SAMTools SNP 554481 554481 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold269 SAMTools SNP 559153 559153 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold269 SAMTools SNP 571762 571762 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C38:41 scaffold269 SAMTools SNP 571995 571995 21.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold269 SAMTools SNP 572028 572028 91.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold269 SAMTools SNP 572038 572038 91.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold269 SAMTools SNP 572355 572355 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold269 SAMTools SNP 572387 572387 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold27 SAMTools SNP 3591 3591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold27 SAMTools SNP 3981 3981 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold27 SAMTools SNP 4546 4546 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold27 SAMTools SNP 4579 4579 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold27 SAMTools SNP 4936 4936 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold27 SAMTools SNP 4954 4954 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold27 SAMTools SNP 5161 5161 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold27 SAMTools SNP 5184 5184 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold27 SAMTools SNP 6042 6042 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold27 SAMTools SNP 6069 6069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold27 SAMTools SNP 8466 8466 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold27 SAMTools SNP 13916 13916 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold27 SAMTools SNP 13919 13919 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.0014%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold27 SAMTools SNP 13925 13925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold27 SAMTools SNP 14057 14057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold27 SAMTools SNP 14069 14069 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.6%2C0.43%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold27 SAMTools SNP 14102 14102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C16%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold27 SAMTools SNP 14317 14317 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C2%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.6%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold27 SAMTools SNP 16061 16061 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold27 SAMTools SNP 16481 16481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C22%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold27 SAMTools SNP 17022 17022 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold27 SAMTools SNP 17739 17739 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold27 SAMTools SNP 17757 17757 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold27 SAMTools SNP 18053 18053 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold27 SAMTools SNP 19266 19266 37.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold27 SAMTools SNP 19425 19425 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.4%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C166:99 scaffold27 SAMTools SNP 20017 20017 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold27 SAMTools SNP 21940 21940 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold27 SAMTools SNP 21967 21967 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold27 SAMTools SNP 22015 22015 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold27 SAMTools SNP 22024 22024 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold27 SAMTools SNP 22649 22649 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold27 SAMTools SNP 50698 50698 39.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold27 SAMTools SNP 53642 53642 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold27 SAMTools SNP 53962 53962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold27 SAMTools SNP 54238 54238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold27 SAMTools SNP 54499 54499 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold27 SAMTools SNP 54736 54736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C14%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold27 SAMTools SNP 56392 56392 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold27 SAMTools SNP 60935 60935 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold27 SAMTools SNP 60945 60945 49.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold270 SAMTools SNP 772 772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold270 SAMTools SNP 809 809 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold270 SAMTools SNP 1916 1916 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold270 SAMTools SNP 1917 1917 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold270 SAMTools SNP 1944 1944 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold270 SAMTools SNP 1959 1959 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C32:35 scaffold270 SAMTools SNP 3164 3164 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C43%2C3%2C22%3BMQ%3D47%3BFQ%3D181%3BPV4%3D1%2C0.4%2C0.33%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold270 SAMTools SNP 3859 3859 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C4%3BMQ%3D45%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C242:83 scaffold270 SAMTools SNP 4536 4536 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold270 SAMTools SNP 4557 4557 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold270 SAMTools SNP 4579 4579 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold270 SAMTools SNP 4646 4646 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D32%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C36%2C0:69 scaffold270 SAMTools SNP 5510 5510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C10%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold270 SAMTools SNP 6029 6029 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D16.9%3BPV4%3D0.33%2C0.023%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C50:47 scaffold270 SAMTools SNP 6038 6038 84.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold270 SAMTools SNP 6055 6055 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold270 SAMTools SNP 6425 6425 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C49%2C67%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.021%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold270 SAMTools SNP 7451 7451 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold270 SAMTools SNP 10660 10660 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold270 SAMTools SNP 10676 10676 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold270 SAMTools SNP 12198 12198 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold270 SAMTools SNP 12321 12321 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C71:37 scaffold270 SAMTools SNP 15761 15761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold270 SAMTools SNP 19906 19906 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold270 SAMTools SNP 21633 21633 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold270 SAMTools SNP 30039 30039 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold270 SAMTools SNP 30114 30114 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C117:40 scaffold270 SAMTools SNP 30149 30149 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C217:99 scaffold270 SAMTools SNP 30160 30160 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold270 SAMTools SNP 31795 31795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold270 SAMTools SNP 31801 31801 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0049%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold270 SAMTools SNP 31822 31822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold270 SAMTools SNP 32098 32098 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold270 SAMTools SNP 32685 32685 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold270 SAMTools SNP 38612 38612 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold270 SAMTools SNP 39289 39289 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold270 SAMTools SNP 39361 39361 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold270 SAMTools SNP 40199 40199 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold270 SAMTools SNP 40619 40619 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold270 SAMTools SNP 41323 41323 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold270 SAMTools SNP 41583 41583 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold270 SAMTools SNP 48419 48419 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C117%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold270 SAMTools SNP 48544 48544 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold270 SAMTools SNP 49054 49054 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C48%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold270 SAMTools SNP 49076 49076 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.21%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold270 SAMTools SNP 49077 49077 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold270 SAMTools SNP 49080 49080 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold270 SAMTools SNP 49184 49184 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold270 SAMTools SNP 49193 49193 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold270 SAMTools SNP 49936 49936 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold270 SAMTools SNP 50028 50028 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C54%2C0:99 scaffold270 SAMTools SNP 50057 50057 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C5%2C0%3BMQ%3D49%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold270 SAMTools SNP 50094 50094 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.31%2C0.17%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold270 SAMTools SNP 111465 111465 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold270 SAMTools SNP 111591 111591 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.36%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold270 SAMTools SNP 111914 111914 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold270 SAMTools SNP 111919 111919 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold271 SAMTools SNP 11123 11123 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold271 SAMTools SNP 45347 45347 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold271 SAMTools SNP 45471 45471 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C2.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C66:69 scaffold271 SAMTools SNP 114806 114806 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 114837 114837 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 116433 116433 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C112:76 scaffold271 SAMTools SNP 219973 219973 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold271 SAMTools SNP 220008 220008 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold271 SAMTools SNP 223469 223469 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold271 SAMTools SNP 223807 223807 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C253:99 scaffold271 SAMTools SNP 223816 223816 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold271 SAMTools SNP 224519 224519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold271 SAMTools SNP 225648 225648 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.32%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C232:99 scaffold271 SAMTools SNP 226091 226091 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold271 SAMTools SNP 239450 239450 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold271 SAMTools SNP 239467 239467 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold271 SAMTools SNP 239481 239481 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold271 SAMTools SNP 259587 259587 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.059%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold271 SAMTools SNP 259757 259757 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold271 SAMTools SNP 260063 260063 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.35%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold271 SAMTools SNP 260505 260505 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold271 SAMTools SNP 260717 260717 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 262223 262223 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C10%2C3%3BMQ%3D24%3BFQ%3D26%3BPV4%3D0.46%2C1%2C0.21%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C148:56 scaffold271 SAMTools SNP 269610 269610 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C281%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 270538 270538 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D228%2C37%2C38%2C16%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0083%2C0.28%2C1%2C2e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold271 SAMTools SNP 270601 270601 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C443%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 271076 271076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C125%2C55%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 273051 273051 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D200%2C33%2C117%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 273709 273709 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C60%2C76%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1.6e-06%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 273757 273757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 273883 273883 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 274525 274525 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C20%2C4%2C8%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.018%2C0.2%2C1%2C3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold271 SAMTools SNP 274951 274951 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C10%2C48%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold271 SAMTools SNP 274953 274953 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C8%2C66%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold271 SAMTools SNP 275825 275825 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold271 SAMTools SNP 288864 288864 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 289059 289059 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C2.3e-10%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C150:99 scaffold271 SAMTools SNP 289893 289893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold271 SAMTools SNP 289897 289897 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold271 SAMTools SNP 289903 289903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold271 SAMTools SNP 290248 290248 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.3e-08%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C160:33 scaffold271 SAMTools SNP 291242 291242 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.041%2C4.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold271 SAMTools SNP 293676 293676 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold271 SAMTools SNP 293697 293697 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold271 SAMTools SNP 294612 294612 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold271 SAMTools SNP 294633 294633 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold271 SAMTools SNP 294811 294811 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold271 SAMTools SNP 295245 295245 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold271 SAMTools SNP 295275 295275 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C125:99 scaffold271 SAMTools SNP 295888 295888 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold271 SAMTools SNP 295922 295922 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold271 SAMTools SNP 295942 295942 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold271 SAMTools SNP 296769 296769 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold271 SAMTools SNP 296792 296792 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.57%2C0.31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold271 SAMTools SNP 299603 299603 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C90%2C0:99 scaffold271 SAMTools SNP 305898 305898 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.018%2C0.0087%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C158:81 scaffold271 SAMTools SNP 306152 306152 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C129:99 scaffold271 SAMTools SNP 306170 306170 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.11%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold271 SAMTools SNP 306263 306263 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold271 SAMTools SNP 306672 306672 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 308288 308288 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold271 SAMTools SNP 309385 309385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 309412 309412 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold271 SAMTools SNP 309439 309439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold271 SAMTools SNP 311176 311176 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 313500 313500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C39%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold271 SAMTools SNP 313676 313676 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C32%2C39%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D2.3e-09%2C5.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold271 SAMTools SNP 314805 314805 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 314940 314940 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C42%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold271 SAMTools SNP 318531 318531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold271 SAMTools SNP 318571 318571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 321816 321816 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 321849 321849 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold271 SAMTools SNP 322200 322200 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C209%2C1%3BMQ%3D6%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C255%2C0:99 scaffold271 SAMTools SNP 325584 325584 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C11%2C14%3BMQ%3D34%3BFQ%3D168%3BPV4%3D0.56%2C1%2C0.34%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C198:99 scaffold271 SAMTools SNP 325585 325585 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C12%2C10%3BMQ%3D35%3BFQ%3D170%3BPV4%3D0.77%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C206:99 scaffold271 SAMTools SNP 325912 325912 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C18%2C3%3BMQ%3D45%3BFQ%3D186%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold271 SAMTools SNP 326190 326190 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C32%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold271 SAMTools SNP 326560 326560 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 327729 327729 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 327812 327812 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C8%2C15%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold271 SAMTools SNP 328015 328015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.48%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 328038 328038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold271 SAMTools SNP 328318 328318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold271 SAMTools SNP 357163 357163 94.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold271 SAMTools SNP 359911 359911 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.11%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C130:67 scaffold271 SAMTools SNP 360182 360182 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C16%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.089%2C9.2e-34%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold271 SAMTools SNP 364680 364680 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C5%2C50%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.048%2C8.7e-100%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold271 SAMTools SNP 364724 364724 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C10%2C20%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.18%2C1.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold271 SAMTools SNP 364873 364873 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold271 SAMTools SNP 365440 365440 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C15%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.012%2C3.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold271 SAMTools SNP 366192 366192 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C7%2C27%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.41%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold271 SAMTools SNP 368583 368583 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C19%2C48%2C25%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.079%2C8.5e-167%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold271 SAMTools SNP 369486 369486 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C24%2C18%2C20%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.53%2C3.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold271 SAMTools SNP 370314 370314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C21%2C46%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 370482 370482 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C28%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 370601 370601 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.14%2C0.29%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold271 SAMTools SNP 370789 370789 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 371183 371183 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C34%2C5%2C115%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1.9e-05%2C4.5e-118%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold271 SAMTools SNP 371520 371520 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.7e-21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C192:36 scaffold271 SAMTools SNP 385468 385468 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold271 SAMTools SNP 386715 386715 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold271 SAMTools SNP 388303 388303 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold271 SAMTools SNP 393331 393331 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C4%2C53%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.12%2C1.6e-81%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold271 SAMTools SNP 393911 393911 21.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold271 SAMTools SNP 399499 399499 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C45%2C0:87 scaffold271 SAMTools SNP 400096 400096 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C39%2C11%2C18%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1.1e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold271 SAMTools SNP 400237 400237 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C25%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.057%2C7.5e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold271 SAMTools SNP 401086 401086 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.17%2C2.2e-11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold271 SAMTools SNP 401099 401099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold271 SAMTools SNP 401809 401809 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C16%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.68%2C2.2e-36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold271 SAMTools SNP 411233 411233 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 411701 411701 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C220:51 scaffold271 SAMTools SNP 411702 411702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold271 SAMTools SNP 411755 411755 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C8%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold271 SAMTools SNP 413354 413354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C171%2C10%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C5.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 413363 413363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C196%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 414060 414060 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C25%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 414553 414553 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold271 SAMTools SNP 415100 415100 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C42%2C53%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 416382 416382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold271 SAMTools SNP 416880 416880 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C12%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C181%2C0:99 scaffold271 SAMTools SNP 417827 417827 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C17%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold271 SAMTools SNP 418292 418292 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C9%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.16%2C7.2e-20%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold271 SAMTools SNP 423765 423765 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 425562 425562 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold271 SAMTools SNP 425967 425967 6.2 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C26%2C23%2C35%2C0%2C32:4 scaffold271 SAMTools SNP 428059 428059 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold271 SAMTools SNP 429020 429020 93.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C18%2C0:33 scaffold271 SAMTools SNP 430377 430377 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold271 SAMTools SNP 431004 431004 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C16%2C8%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold271 SAMTools SNP 431263 431263 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C68%2C2%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C0.22%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 435631 435631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.01%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 436444 436444 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C30%2C24%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 436617 436617 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D141%2C17%2C6%2C11%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1.7e-06%2C0.096%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold271 SAMTools SNP 437461 437461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C129%2C3%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 437518 437518 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C19%2C180%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.00012%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 441360 441360 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.091%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold271 SAMTools SNP 441450 441450 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold271 SAMTools SNP 441459 441459 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold271 SAMTools SNP 442720 442720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C27%3BMQ%3D49%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold271 SAMTools SNP 442765 442765 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C6%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C0.2%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 443717 443717 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C15%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0022%2C2e-06%2C1%2C9.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold271 SAMTools SNP 443773 443773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.099%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 444762 444762 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C1%2C7%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold271 SAMTools SNP 444784 444784 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold271 SAMTools SNP 448395 448395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold271 SAMTools SNP 448875 448875 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.78%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold271 SAMTools SNP 448881 448881 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold271 SAMTools SNP 449292 449292 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold271 SAMTools SNP 449320 449320 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.0027%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold271 SAMTools SNP 449364 449364 42.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold271 SAMTools SNP 449490 449490 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.087%2C0.051%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold271 SAMTools SNP 450441 450441 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold271 SAMTools SNP 450455 450455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C0.12%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold271 SAMTools SNP 450545 450545 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold271 SAMTools SNP 451082 451082 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.00061%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C148:75 scaffold271 SAMTools SNP 452005 452005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C66%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold271 SAMTools SNP 452086 452086 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0124%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.23%2C0.0046%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold271 SAMTools SNP 452122 452122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 453245 453245 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 453314 453314 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C1%2C9%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.063%2C0.0026%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold271 SAMTools SNP 456894 456894 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C30%2C0:57 scaffold271 SAMTools SNP 457431 457431 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.2%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold271 SAMTools SNP 457455 457455 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.43%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold271 SAMTools SNP 457482 457482 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.083%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C220:99 scaffold271 SAMTools SNP 463140 463140 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold271 SAMTools SNP 463145 463145 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold271 SAMTools SNP 463552 463552 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold271 SAMTools SNP 463580 463580 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold271 SAMTools SNP 463598 463598 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold271 SAMTools SNP 463907 463907 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 464374 464374 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.14%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold271 SAMTools SNP 464421 464421 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C119:99 scaffold271 SAMTools SNP 464536 464536 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold271 SAMTools SNP 464657 464657 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold271 SAMTools SNP 464678 464678 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 464693 464693 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 465039 465039 69.1 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C47%2C29%2C92%2C0%2C89:33 scaffold271 SAMTools SNP 466507 466507 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold271 SAMTools SNP 466584 466584 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold271 SAMTools SNP 479820 479820 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 479845 479845 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold271 SAMTools SNP 487483 487483 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C5.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C74:77 scaffold271 SAMTools SNP 492370 492370 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 492397 492397 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 492404 492404 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold271 SAMTools SNP 492410 492410 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold271 SAMTools SNP 496341 496341 93 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C27%2C0%2C110%2C1%2C107:51 scaffold271 SAMTools SNP 553712 553712 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 553728 553728 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold271 SAMTools SNP 554120 554120 18.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold271 SAMTools SNP 554837 554837 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 557375 557375 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 557406 557406 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 557471 557471 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 559353 559353 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold271 SAMTools SNP 582185 582185 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 591641 591641 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold271 SAMTools SNP 596340 596340 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.12%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold271 SAMTools SNP 598583 598583 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold271 SAMTools SNP 599900 599900 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold271 SAMTools SNP 607079 607079 3.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold271 SAMTools SNP 607564 607564 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.42%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 607580 607580 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.051%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 610756 610756 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 611701 611701 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold271 SAMTools SNP 613415 613415 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold271 SAMTools SNP 613711 613711 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold271 SAMTools SNP 613946 613946 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C17%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.26%2C6.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C157:46 scaffold271 SAMTools SNP 614324 614324 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold271 SAMTools SNP 616923 616923 46.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D24%3BFQ%3D-29%3BPV4%3D0.52%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C2%2C0:5 scaffold271 SAMTools SNP 616925 616925 46.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D24%3BFQ%3D-29%3BPV4%3D0.52%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C2%2C0:5 scaffold271 SAMTools SNP 621910 621910 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold271 SAMTools SNP 622453 622453 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 624548 624548 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C24%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold271 SAMTools SNP 624642 624642 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C67%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C217%2C0:99 scaffold271 SAMTools SNP 624712 624712 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C30%2C0:57 scaffold271 SAMTools SNP 626920 626920 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C36%2C0:68 scaffold271 SAMTools SNP 627607 627607 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold271 SAMTools SNP 632943 632943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold271 SAMTools SNP 632966 632966 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0049%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold271 SAMTools SNP 632967 632967 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold271 SAMTools SNP 636166 636166 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.00047%2C6e-10%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold271 SAMTools SNP 640378 640378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C41%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold271 SAMTools SNP 644587 644587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold271 SAMTools SNP 645327 645327 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C255%2C0:99 scaffold271 SAMTools SNP 648568 648568 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold271 SAMTools SNP 652682 652682 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C52%2C21%2C69%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.033%2C2.3e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold271 SAMTools SNP 652919 652919 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C136%2C29%2C138%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.55%2C4.2e-175%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold271 SAMTools SNP 653323 653323 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.022%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold271 SAMTools SNP 656023 656023 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C43%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 657557 657557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold271 SAMTools SNP 657584 657584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C81%2C10%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 658083 658083 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 658146 658146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C20%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold271 SAMTools SNP 658764 658764 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C17%2C15%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0069%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold271 SAMTools SNP 661047 661047 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C229:99 scaffold271 SAMTools SNP 664421 664421 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold271 SAMTools SNP 669293 669293 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C108%2C0%2C55%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.032%2C0.35%2C1%2C1.7e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold271 SAMTools SNP 675341 675341 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold271 SAMTools SNP 675380 675380 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C35%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 675410 675410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 684217 684217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C70%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 684224 684224 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C66%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold271 SAMTools SNP 684322 684322 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold271 SAMTools SNP 784156 784156 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold271 SAMTools SNP 806193 806193 5.46 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold271 SAMTools SNP 810098 810098 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold271 SAMTools SNP 814482 814482 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold271 SAMTools SNP 817061 817061 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold271 SAMTools SNP 820215 820215 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 829440 829440 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold271 SAMTools SNP 831225 831225 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 837949 837949 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D948%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C510%2C433%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold271 SAMTools SNP 851554 851554 93 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold271 SAMTools SNP 857358 857358 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 857798 857798 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold271 SAMTools SNP 857885 857885 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold271 SAMTools SNP 859145 859145 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C2.6e-10%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C214:72 scaffold271 SAMTools SNP 859172 859172 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C24%2C0:45 scaffold271 SAMTools SNP 905055 905055 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C19%2C0:35 scaffold271 SAMTools SNP 905089 905089 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C22:25 scaffold271 SAMTools SNP 905773 905773 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold271 SAMTools SNP 905783 905783 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 905825 905825 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 905826 905826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 906148 906148 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 906309 906309 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold271 SAMTools SNP 906433 906433 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold271 SAMTools SNP 906665 906665 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 906839 906839 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C15:18 scaffold271 SAMTools SNP 906859 906859 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold271 SAMTools SNP 907347 907347 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C143:99 scaffold271 SAMTools SNP 907648 907648 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold271 SAMTools SNP 907666 907666 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold271 SAMTools SNP 907820 907820 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 908018 908018 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold271 SAMTools SNP 908212 908212 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold271 SAMTools SNP 908602 908602 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold271 SAMTools SNP 909364 909364 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold271 SAMTools SNP 909621 909621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.48%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold271 SAMTools SNP 936286 936286 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold271 SAMTools SNP 947750 947750 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold271 SAMTools SNP 947824 947824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold271 SAMTools SNP 948082 948082 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 91 91 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 29344 29344 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold273 SAMTools SNP 37583 37583 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold273 SAMTools SNP 37609 37609 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold273 SAMTools SNP 37659 37659 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold273 SAMTools SNP 53524 53524 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold273 SAMTools SNP 56409 56409 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 61565 61565 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 95567 95567 29.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold273 SAMTools SNP 112086 112086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 112110 112110 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C135:99 scaffold273 SAMTools SNP 113762 113762 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold273 SAMTools SNP 113902 113902 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C10%2C21%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.75%2C4.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold273 SAMTools SNP 113984 113984 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold273 SAMTools SNP 116366 116366 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold273 SAMTools SNP 137580 137580 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C33%2C0:63 scaffold273 SAMTools SNP 139252 139252 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 139405 139405 35.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold273 SAMTools SNP 141008 141008 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C18%2C0:33 scaffold273 SAMTools SNP 141038 141038 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold273 SAMTools SNP 141089 141089 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C34%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.58%2C3.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold273 SAMTools SNP 141179 141179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold273 SAMTools SNP 141218 141218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C17%2C54%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold273 SAMTools SNP 141642 141642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C38%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold273 SAMTools SNP 141696 141696 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C8%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.27%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold273 SAMTools SNP 145013 145013 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold273 SAMTools SNP 145676 145676 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C52%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold273 SAMTools SNP 147129 147129 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold273 SAMTools SNP 151680 151680 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C70%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold273 SAMTools SNP 151718 151718 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 2047 2047 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 8689 8689 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 8732 8732 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold274 SAMTools SNP 9011 9011 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 9062 9062 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold274 SAMTools SNP 9774 9774 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 20118 20118 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold274 SAMTools SNP 22074 22074 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold274 SAMTools SNP 24035 24035 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold274 SAMTools SNP 24345 24345 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold274 SAMTools SNP 24437 24437 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold274 SAMTools SNP 27515 27515 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 28131 28131 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 28186 28186 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 28214 28214 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 28548 28548 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 28571 28571 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 29319 29319 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 31883 31883 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold274 SAMTools SNP 32493 32493 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold274 SAMTools SNP 34536 34536 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.6%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold274 SAMTools SNP 34555 34555 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C0.12%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold274 SAMTools SNP 34884 34884 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold274 SAMTools SNP 34899 34899 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 44857 44857 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 50103 50103 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold274 SAMTools SNP 50492 50492 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold274 SAMTools SNP 50512 50512 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.3e-11%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C225:39 scaffold274 SAMTools SNP 52077 52077 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold274 SAMTools SNP 53842 53842 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.38%2C1.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold274 SAMTools SNP 54083 54083 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C174:30 scaffold274 SAMTools SNP 54295 54295 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold274 SAMTools SNP 54432 54432 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold274 SAMTools SNP 54721 54721 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C89:43 scaffold274 SAMTools SNP 56464 56464 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold274 SAMTools SNP 57657 57657 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 57679 57679 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 58280 58280 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 60587 60587 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 60599 60599 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 62911 62911 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 67161 67161 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.49%2C4.7e-11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold274 SAMTools SNP 70876 70876 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 72525 72525 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 74329 74329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C12%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold274 SAMTools SNP 74953 74953 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 74973 74973 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold274 SAMTools SNP 75018 75018 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold274 SAMTools SNP 75045 75045 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold274 SAMTools SNP 75817 75817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C47%2C2%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-06%2C1%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 76284 76284 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C27%2C0:51 scaffold274 SAMTools SNP 76364 76364 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold274 SAMTools SNP 96522 96522 72.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold274 SAMTools SNP 97457 97457 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold274 SAMTools SNP 106000 106000 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 108250 108250 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold274 SAMTools SNP 110825 110825 11.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold274 SAMTools SNP 110985 110985 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.5%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C242:65 scaffold274 SAMTools SNP 110995 110995 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold274 SAMTools SNP 114130 114130 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold274 SAMTools SNP 114819 114819 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 114840 114840 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold274 SAMTools SNP 125063 125063 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 125087 125087 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold274 SAMTools SNP 131445 131445 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold274 SAMTools SNP 134095 134095 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold274 SAMTools SNP 134537 134537 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C35%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.8e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C244:40 scaffold274 SAMTools SNP 139908 139908 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold274 SAMTools SNP 141291 141291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold274 SAMTools SNP 141308 141308 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold274 SAMTools SNP 145911 145911 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold274 SAMTools SNP 146973 146973 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold274 SAMTools SNP 147073 147073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C29%2C17%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-10%2C0.49%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 147074 147074 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C30%2C161%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-10%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 148315 148315 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C85%2C219%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-18%2C3.7e-158%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 148750 148750 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D655%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C221%2C88%2C245%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 149383 149383 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C56%2C8%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 149401 149401 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 150383 150383 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold274 SAMTools SNP 161791 161791 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C2%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold274 SAMTools SNP 162148 162148 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold274 SAMTools SNP 162149 162149 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold274 SAMTools SNP 169822 169822 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold274 SAMTools SNP 171991 171991 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D29%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold274 SAMTools SNP 172027 172027 188 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D28%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C57%2C0:99 scaffold274 SAMTools SNP 172391 172391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold274 SAMTools SNP 172406 172406 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold274 SAMTools SNP 172824 172824 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold274 SAMTools SNP 172854 172854 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold274 SAMTools SNP 173241 173241 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold274 SAMTools SNP 173613 173613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 175868 175868 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C44%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 176214 176214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C82%2C92%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-10%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 177604 177604 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold274 SAMTools SNP 178443 178443 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C8%3BMQ%3D47%3BFQ%3D150%3BPV4%3D1%2C7.2e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C181:99 scaffold274 SAMTools SNP 179821 179821 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 182269 182269 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold274 SAMTools SNP 198614 198614 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold274 SAMTools SNP 198788 198788 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold274 SAMTools SNP 198806 198806 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold274 SAMTools SNP 198836 198836 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.08%2C0.0012%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C177:99 scaffold274 SAMTools SNP 198926 198926 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold274 SAMTools SNP 198932 198932 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold274 SAMTools SNP 199525 199525 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 199949 199949 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 200072 200072 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 200341 200341 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C107:99 scaffold274 SAMTools SNP 200392 200392 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold274 SAMTools SNP 200407 200407 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 201710 201710 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold274 SAMTools SNP 202402 202402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold274 SAMTools SNP 202905 202905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold274 SAMTools SNP 203956 203956 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 204752 204752 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold274 SAMTools SNP 204918 204918 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold274 SAMTools SNP 205003 205003 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 205012 205012 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold274 SAMTools SNP 205897 205897 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold274 SAMTools SNP 205908 205908 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold274 SAMTools SNP 205912 205912 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold274 SAMTools SNP 205938 205938 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold274 SAMTools SNP 208325 208325 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold274 SAMTools SNP 208766 208766 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold274 SAMTools SNP 209709 209709 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold274 SAMTools SNP 209763 209763 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold274 SAMTools SNP 209784 209784 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C253:99 scaffold274 SAMTools SNP 210222 210222 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C87%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.13%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold274 SAMTools SNP 210663 210663 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C75%2C47%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-15%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 210678 210678 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C67%2C48%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-19%2C9.4e-06%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 210705 210705 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold274 SAMTools SNP 210711 210711 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C236:99 scaffold274 SAMTools SNP 210732 210732 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C47%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold274 SAMTools SNP 210735 210735 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C47%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.58%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold274 SAMTools SNP 211468 211468 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold274 SAMTools SNP 215016 215016 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold274 SAMTools SNP 215026 215026 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold274 SAMTools SNP 215058 215058 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold274 SAMTools SNP 215061 215061 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold274 SAMTools SNP 215064 215064 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold274 SAMTools SNP 215450 215450 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold274 SAMTools SNP 219807 219807 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.014%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C96:99 scaffold274 SAMTools SNP 221016 221016 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.36%2C5.9e-16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold274 SAMTools SNP 221034 221034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold274 SAMTools SNP 221124 221124 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C27%2C0:51 scaffold274 SAMTools SNP 222805 222805 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C187:99 scaffold274 SAMTools SNP 222812 222812 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold274 SAMTools SNP 223880 223880 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 224288 224288 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold274 SAMTools SNP 224309 224309 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C127:99 scaffold274 SAMTools SNP 225720 225720 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold274 SAMTools SNP 225735 225735 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.26%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold274 SAMTools SNP 226445 226445 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.18%2C3.2e-07%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold274 SAMTools SNP 227298 227298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold274 SAMTools SNP 227370 227370 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold274 SAMTools SNP 228709 228709 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 228722 228722 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 230607 230607 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold274 SAMTools SNP 230634 230634 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C71:37 scaffold274 SAMTools SNP 233309 233309 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 233660 233660 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 233667 233667 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 233693 233693 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold274 SAMTools SNP 235337 235337 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 237272 237272 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.32%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 238838 238838 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold274 SAMTools SNP 238859 238859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 239039 239039 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold274 SAMTools SNP 239578 239578 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold274 SAMTools SNP 240708 240708 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 240747 240747 95.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold274 SAMTools SNP 246493 246493 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 246522 246522 12.7 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C47%2C35%2C40%2C0%2C37:18 scaffold274 SAMTools SNP 246552 246552 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 247110 247110 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold274 SAMTools SNP 247143 247143 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold274 SAMTools SNP 252226 252226 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold274 SAMTools SNP 252374 252374 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.1e-13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C116:90 scaffold274 SAMTools SNP 254253 254253 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 255469 255469 50.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold274 SAMTools SNP 256025 256025 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold274 SAMTools SNP 256168 256168 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 256210 256210 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 256213 256213 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold274 SAMTools SNP 256214 256214 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold274 SAMTools SNP 257046 257046 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold274 SAMTools SNP 257075 257075 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold274 SAMTools SNP 257098 257098 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 257683 257683 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold274 SAMTools SNP 258887 258887 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C231:99 scaffold274 SAMTools SNP 258991 258991 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold274 SAMTools SNP 259557 259557 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.2%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold274 SAMTools SNP 259775 259775 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold274 SAMTools SNP 263842 263842 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D696%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D126%2C174%2C69%2C84%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.55%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold274 SAMTools SNP 264046 264046 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold274 SAMTools SNP 264335 264335 12.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold274 SAMTools SNP 265107 265107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4922%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4881%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold274 SAMTools SNP 265119 265119 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4910%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2979%2C58%2C1869%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C1.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 265149 265149 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6474%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C35%2C6435%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.022%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold274 SAMTools SNP 265158 265158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6441%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6439%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold274 SAMTools SNP 265594 265594 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold274 SAMTools SNP 267343 267343 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold274 SAMTools SNP 268507 268507 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.5e-15%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold274 SAMTools SNP 268793 268793 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold274 SAMTools SNP 268883 268883 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold274 SAMTools SNP 268905 268905 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold274 SAMTools SNP 269177 269177 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 269192 269192 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold274 SAMTools SNP 269614 269614 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold274 SAMTools SNP 269655 269655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 269944 269944 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.4%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold274 SAMTools SNP 270392 270392 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold274 SAMTools SNP 270420 270420 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold274 SAMTools SNP 270598 270598 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold274 SAMTools SNP 271875 271875 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold274 SAMTools SNP 272165 272165 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold274 SAMTools SNP 272585 272585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.58%2C0.37%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold274 SAMTools SNP 272896 272896 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0095%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold274 SAMTools SNP 272908 272908 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold274 SAMTools SNP 273332 273332 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.25%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold274 SAMTools SNP 273748 273748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D39%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold274 SAMTools SNP 274083 274083 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C12%2C1%3BMQ%3D37%3BFQ%3D163%3BPV4%3D5.3e-08%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold274 SAMTools SNP 274093 274093 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C11%2C2%3BMQ%3D36%3BFQ%3D151%3BPV4%3D1.8e-06%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold274 SAMTools SNP 275543 275543 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 278132 278132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold274 SAMTools SNP 278174 278174 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold274 SAMTools SNP 278192 278192 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold274 SAMTools SNP 278386 278386 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 278569 278569 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold274 SAMTools SNP 279578 279578 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.45%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold274 SAMTools SNP 280680 280680 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C0.17%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold274 SAMTools SNP 280725 280725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold274 SAMTools SNP 280734 280734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold274 SAMTools SNP 281377 281377 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold274 SAMTools SNP 282135 282135 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C0%3BMQ%3D47%3BFQ%3D9.53%3BPV4%3D0.035%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold274 SAMTools SNP 284238 284238 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold274 SAMTools SNP 284252 284252 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold274 SAMTools SNP 286112 286112 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold274 SAMTools SNP 286131 286131 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold274 SAMTools SNP 286466 286466 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold274 SAMTools SNP 286643 286643 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold274 SAMTools SNP 286658 286658 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold274 SAMTools SNP 286712 286712 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold274 SAMTools SNP 286921 286921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold274 SAMTools SNP 286948 286948 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold274 SAMTools SNP 286972 286972 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold274 SAMTools SNP 287133 287133 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C7.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold274 SAMTools SNP 287200 287200 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C4.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C217:72 scaffold274 SAMTools SNP 287706 287706 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C9.7e-29%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold274 SAMTools SNP 287931 287931 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C8.8e-15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold274 SAMTools SNP 410572 410572 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.14%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C154:99 scaffold274 SAMTools SNP 454985 454985 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold275 SAMTools SNP 3082 3082 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold275 SAMTools SNP 8348 8348 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold275 SAMTools SNP 18936 18936 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold275 SAMTools SNP 53450 53450 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold275 SAMTools SNP 73892 73892 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold275 SAMTools SNP 75889 75889 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold275 SAMTools SNP 75912 75912 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold275 SAMTools SNP 79996 79996 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C75%2C0:99 scaffold275 SAMTools SNP 80704 80704 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 844 844 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold276 SAMTools SNP 27409 27409 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold276 SAMTools SNP 27978 27978 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold276 SAMTools SNP 28786 28786 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold276 SAMTools SNP 29409 29409 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold276 SAMTools SNP 29420 29420 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold276 SAMTools SNP 39200 39200 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0051%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold276 SAMTools SNP 42756 42756 27.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold276 SAMTools SNP 43134 43134 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold276 SAMTools SNP 43146 43146 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold276 SAMTools SNP 48204 48204 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold276 SAMTools SNP 80696 80696 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold276 SAMTools SNP 80743 80743 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold276 SAMTools SNP 81130 81130 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold276 SAMTools SNP 81133 81133 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold276 SAMTools SNP 81208 81208 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 81768 81768 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold276 SAMTools SNP 82072 82072 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold276 SAMTools SNP 82087 82087 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold276 SAMTools SNP 83106 83106 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 83115 83115 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 83170 83170 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold276 SAMTools SNP 83583 83583 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold276 SAMTools SNP 84238 84238 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold276 SAMTools SNP 84250 84250 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold276 SAMTools SNP 84789 84789 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 84805 84805 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold276 SAMTools SNP 85125 85125 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold276 SAMTools SNP 90702 90702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold276 SAMTools SNP 90709 90709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold276 SAMTools SNP 92694 92694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold276 SAMTools SNP 92700 92700 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold276 SAMTools SNP 93065 93065 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.29%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C230:99 scaffold276 SAMTools SNP 93071 93071 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C195:99 scaffold276 SAMTools SNP 93421 93421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold276 SAMTools SNP 93937 93937 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold276 SAMTools SNP 99062 99062 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold276 SAMTools SNP 99094 99094 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold276 SAMTools SNP 100779 100779 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold276 SAMTools SNP 100945 100945 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold276 SAMTools SNP 100960 100960 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold276 SAMTools SNP 100996 100996 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C2%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold276 SAMTools SNP 101065 101065 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold276 SAMTools SNP 102733 102733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C10%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.11%2C0.029%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold276 SAMTools SNP 102769 102769 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0047%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C231:99 scaffold276 SAMTools SNP 103275 103275 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.015%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C152:99 scaffold276 SAMTools SNP 103281 103281 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.017%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold276 SAMTools SNP 105942 105942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold276 SAMTools SNP 117614 117614 38.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold276 SAMTools SNP 118043 118043 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C66%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C232%2C0:99 scaffold276 SAMTools SNP 118183 118183 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.27%2C0.00024%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold276 SAMTools SNP 118217 118217 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold276 SAMTools SNP 118409 118409 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold276 SAMTools SNP 119006 119006 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 119046 119046 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold276 SAMTools SNP 131647 131647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold276 SAMTools SNP 131649 131649 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold276 SAMTools SNP 131721 131721 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold278 SAMTools SNP 12310 12310 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold278 SAMTools SNP 12386 12386 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold278 SAMTools SNP 12448 12448 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold278 SAMTools SNP 29142 29142 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold278 SAMTools SNP 38403 38403 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold278 SAMTools SNP 42920 42920 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold278 SAMTools SNP 46660 46660 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C119%2C23%2C135%3BMQ%3D13%3BFQ%3D22%3BPV4%3D1%2C1.6e-73%2C0.043%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C147:52 scaffold278 SAMTools SNP 47330 47330 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C14%2C35%2C18%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0058%2C0.21%2C3.2e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold278 SAMTools SNP 47381 47381 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C68%2C19%2C38%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.078%2C1%2C0.00065%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold278 SAMTools SNP 49399 49399 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold278 SAMTools SNP 51141 51141 80 . . REF=A;ALT=T,C,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C117%2C108%2C117%2C0%2C108%2C182%2C72%2C72%2C179:16 scaffold278 SAMTools SNP 51947 51947 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold278 SAMTools SNP 54768 54768 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold278 SAMTools SNP 57416 57416 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C14%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.2%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold278 SAMTools SNP 57821 57821 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C34%2C60%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold278 SAMTools SNP 57881 57881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C65%2C30%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.17%2C1%2C0.32%2C5.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold278 SAMTools SNP 57959 57959 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C93%2C1%2C82%3BMQ%3D49%3BFQ%3D92%3BPV4%3D0.074%2C9.8e-107%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold278 SAMTools SNP 58727 58727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold278 SAMTools SNP 58763 58763 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold278 SAMTools SNP 58784 58784 70.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold278 SAMTools SNP 60756 60756 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold278 SAMTools SNP 69637 69637 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold278 SAMTools SNP 70463 70463 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold278 SAMTools SNP 81746 81746 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold278 SAMTools SNP 81758 81758 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold278 SAMTools SNP 82305 82305 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold278 SAMTools SNP 82673 82673 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.25%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold278 SAMTools SNP 83142 83142 33.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold278 SAMTools SNP 83163 83163 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold278 SAMTools SNP 83524 83524 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold278 SAMTools SNP 87547 87547 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold278 SAMTools SNP 89864 89864 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold278 SAMTools SNP 93690 93690 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold278 SAMTools SNP 93971 93971 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold278 SAMTools SNP 94075 94075 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold278 SAMTools SNP 124788 124788 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold278 SAMTools SNP 129384 129384 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 14066 14066 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold279 SAMTools SNP 15125 15125 41.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold279 SAMTools SNP 38874 38874 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00091%2C7.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C74:77 scaffold279 SAMTools SNP 40011 40011 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 40403 40403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold279 SAMTools SNP 40448 40448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C39%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold279 SAMTools SNP 40755 40755 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 40759 40759 56.8 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C47%2C41%2C87%2C0%2C84:10 scaffold279 SAMTools SNP 42315 42315 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold279 SAMTools SNP 61636 61636 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold279 SAMTools SNP 61677 61677 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0086%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold279 SAMTools SNP 61773 61773 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold279 SAMTools SNP 61814 61814 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C3%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.65%2C3.1e-30%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold279 SAMTools SNP 63042 63042 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C96%2C0:99 scaffold279 SAMTools SNP 63828 63828 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.25%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C177:60 scaffold279 SAMTools SNP 63944 63944 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold279 SAMTools SNP 69410 69410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 70317 70317 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold279 SAMTools SNP 70618 70618 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold279 SAMTools SNP 70692 70692 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 73058 73058 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 73103 73103 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 73117 73117 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold279 SAMTools SNP 87559 87559 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold279 SAMTools SNP 88397 88397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold279 SAMTools SNP 88429 88429 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold279 SAMTools SNP 103731 103731 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold279 SAMTools SNP 103754 103754 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold279 SAMTools SNP 103917 103917 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold279 SAMTools SNP 105280 105280 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold279 SAMTools SNP 105295 105295 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold279 SAMTools SNP 105343 105343 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D1%2C0.00099%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C74:62 scaffold279 SAMTools SNP 106090 106090 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 107625 107625 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C159%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 108568 108568 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 108618 108618 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C237:99 scaffold279 SAMTools SNP 108636 108636 84.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold279 SAMTools SNP 108711 108711 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C123%2C17%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold279 SAMTools SNP 109031 109031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C54%2C27%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 109211 109211 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold279 SAMTools SNP 110769 110769 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold279 SAMTools SNP 110829 110829 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold279 SAMTools SNP 110838 110838 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.021%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold279 SAMTools SNP 112232 112232 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C158:87 scaffold279 SAMTools SNP 112238 112238 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold279 SAMTools SNP 112645 112645 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 112679 112679 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0014%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold279 SAMTools SNP 113030 113030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold279 SAMTools SNP 113556 113556 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold279 SAMTools SNP 113583 113583 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold279 SAMTools SNP 113611 113611 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold279 SAMTools SNP 113658 113658 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold279 SAMTools SNP 113700 113700 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 114027 114027 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold279 SAMTools SNP 114303 114303 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C1%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold279 SAMTools SNP 114625 114625 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C32%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 114951 114951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold279 SAMTools SNP 115157 115157 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold279 SAMTools SNP 115256 115256 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold279 SAMTools SNP 116250 116250 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C19%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold279 SAMTools SNP 116647 116647 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.011%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold279 SAMTools SNP 117229 117229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold279 SAMTools SNP 117247 117247 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold279 SAMTools SNP 117358 117358 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold279 SAMTools SNP 117372 117372 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold279 SAMTools SNP 117941 117941 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C207:63 scaffold279 SAMTools SNP 117963 117963 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C232:85 scaffold279 SAMTools SNP 118006 118006 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 118245 118245 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.049%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold279 SAMTools SNP 118288 118288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C12%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 118563 118563 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C36%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold279 SAMTools SNP 119121 119121 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 119653 119653 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold279 SAMTools SNP 119656 119656 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold279 SAMTools SNP 119728 119728 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold279 SAMTools SNP 119776 119776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.16%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold279 SAMTools SNP 122596 122596 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.033%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold279 SAMTools SNP 122692 122692 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C112:30 scaffold279 SAMTools SNP 123057 123057 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold279 SAMTools SNP 123326 123326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold279 SAMTools SNP 123347 123347 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold279 SAMTools SNP 123386 123386 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold279 SAMTools SNP 124545 124545 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold279 SAMTools SNP 124605 124605 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold279 SAMTools SNP 124626 124626 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C19%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.52%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold279 SAMTools SNP 124924 124924 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C19%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.32%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C220:99 scaffold279 SAMTools SNP 124987 124987 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C78:81 scaffold279 SAMTools SNP 125326 125326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold279 SAMTools SNP 125840 125840 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold279 SAMTools SNP 127075 127075 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold279 SAMTools SNP 127132 127132 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold279 SAMTools SNP 127159 127159 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold279 SAMTools SNP 127570 127570 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 127588 127588 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 127654 127654 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold279 SAMTools SNP 127837 127837 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold279 SAMTools SNP 127903 127903 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold279 SAMTools SNP 129354 129354 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold279 SAMTools SNP 129438 129438 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold279 SAMTools SNP 130115 130115 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 130144 130144 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold279 SAMTools SNP 130815 130815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 131839 131839 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C71:33 scaffold279 SAMTools SNP 134244 134244 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C7.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold279 SAMTools SNP 135911 135911 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C57%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.23%2C1%2C7.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 136333 136333 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C29%2C60%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 136388 136388 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 136429 136429 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C184%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 136773 136773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold279 SAMTools SNP 137318 137318 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 137655 137655 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C0%2C84%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.31%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold279 SAMTools SNP 137694 137694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C353%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 137857 137857 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C263%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold279 SAMTools SNP 138196 138196 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C46%2C19%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D9e-05%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold279 SAMTools SNP 138840 138840 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C0%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.028%2C0.00026%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold279 SAMTools SNP 138927 138927 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold279 SAMTools SNP 141373 141373 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold279 SAMTools SNP 141918 141918 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C189:99 scaffold279 SAMTools SNP 146746 146746 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 146759 146759 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 147280 147280 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold279 SAMTools SNP 147316 147316 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold279 SAMTools SNP 148998 148998 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold279 SAMTools SNP 149029 149029 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 156815 156815 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold279 SAMTools SNP 158057 158057 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold279 SAMTools SNP 201620 201620 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 202129 202129 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 202135 202135 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold279 SAMTools SNP 203201 203201 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold279 SAMTools SNP 204056 204056 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold279 SAMTools SNP 204059 204059 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold279 SAMTools SNP 204754 204754 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold279 SAMTools SNP 206731 206731 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold279 SAMTools SNP 206748 206748 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold279 SAMTools SNP 207282 207282 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold279 SAMTools SNP 207731 207731 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold279 SAMTools SNP 207743 207743 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold279 SAMTools SNP 207818 207818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold279 SAMTools SNP 208502 208502 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold279 SAMTools SNP 208775 208775 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold279 SAMTools SNP 209400 209400 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 209465 209465 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold279 SAMTools SNP 209586 209586 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold279 SAMTools SNP 209592 209592 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold279 SAMTools SNP 209634 209634 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold279 SAMTools SNP 209816 209816 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 214092 214092 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C105:99 scaffold279 SAMTools SNP 214104 214104 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C97:99 scaffold279 SAMTools SNP 220734 220734 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 232053 232053 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold279 SAMTools SNP 232080 232080 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.47%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold279 SAMTools SNP 232802 232802 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold279 SAMTools SNP 234233 234233 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 234242 234242 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 235536 235536 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold279 SAMTools SNP 235539 235539 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold279 SAMTools SNP 236011 236011 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C130:74 scaffold279 SAMTools SNP 236017 236017 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0005%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C210:99 scaffold279 SAMTools SNP 236026 236026 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold279 SAMTools SNP 236234 236234 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C23%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1e-05%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C108:99 scaffold279 SAMTools SNP 237028 237028 145 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D36%3BPV4%3D0.022%2C0.24%2C0.32%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C63:66 scaffold279 SAMTools SNP 240406 240406 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.55%2C4.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold279 SAMTools SNP 240472 240472 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold279 SAMTools SNP 240776 240776 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.53%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold279 SAMTools SNP 241154 241154 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C11%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 241482 241482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C35%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold279 SAMTools SNP 242242 242242 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C10%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold279 SAMTools SNP 242246 242246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold279 SAMTools SNP 243384 243384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 245068 245068 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold279 SAMTools SNP 245086 245086 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold279 SAMTools SNP 245108 245108 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold279 SAMTools SNP 247573 247573 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.21%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C113:99 scaffold279 SAMTools SNP 247576 247576 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C146:99 scaffold279 SAMTools SNP 248064 248064 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold279 SAMTools SNP 248082 248082 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.01%2C0.46%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold279 SAMTools SNP 248537 248537 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C19%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 248660 248660 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C22%2C29%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D3.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold279 SAMTools SNP 249192 249192 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold279 SAMTools SNP 250959 250959 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C221:99 scaffold279 SAMTools SNP 250978 250978 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold279 SAMTools SNP 251729 251729 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C33%2C0:57 scaffold279 SAMTools SNP 254296 254296 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold279 SAMTools SNP 254427 254427 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C105%2C0:99 scaffold279 SAMTools SNP 280243 280243 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold279 SAMTools SNP 281988 281988 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold279 SAMTools SNP 283663 283663 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold279 SAMTools SNP 288802 288802 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold279 SAMTools SNP 290063 290063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C4%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold279 SAMTools SNP 290113 290113 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold279 SAMTools SNP 290658 290658 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C4e-14%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C247:28 scaffold279 SAMTools SNP 290995 290995 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C21%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.12%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold279 SAMTools SNP 291012 291012 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold279 SAMTools SNP 297529 297529 22.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold279 SAMTools SNP 297653 297653 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold279 SAMTools SNP 299309 299309 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold279 SAMTools SNP 299719 299719 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C2%2C23%3BMQ%3D49%3BFQ%3D206%3BPV4%3D0.57%2C1%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold279 SAMTools SNP 299987 299987 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D45%3BFQ%3D103%3BPV4%3D0.18%2C1%2C0.093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C188:99 scaffold279 SAMTools SNP 300105 300105 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C126:31 scaffold279 SAMTools SNP 302222 302222 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold279 SAMTools SNP 302710 302710 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold279 SAMTools SNP 302729 302729 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 302792 302792 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold279 SAMTools SNP 307119 307119 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold279 SAMTools SNP 307152 307152 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold279 SAMTools SNP 307699 307699 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.2%3BPV4%3D0.4%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C110:99 scaffold279 SAMTools SNP 308396 308396 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold279 SAMTools SNP 308399 308399 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 308593 308593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold279 SAMTools SNP 308990 308990 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.49%2C4.8e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C153:75 scaffold279 SAMTools SNP 309013 309013 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold279 SAMTools SNP 309068 309068 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold279 SAMTools SNP 311322 311322 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold279 SAMTools SNP 311333 311333 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold279 SAMTools SNP 317177 317177 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold279 SAMTools SNP 317207 317207 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold279 SAMTools SNP 317729 317729 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold279 SAMTools SNP 317867 317867 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 318393 318393 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 318432 318432 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 318447 318447 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold279 SAMTools SNP 319089 319089 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 319104 319104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold279 SAMTools SNP 319122 319122 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold279 SAMTools SNP 319125 319125 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C0.35%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold279 SAMTools SNP 319137 319137 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold279 SAMTools SNP 319352 319352 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C3.5e-06%2C1%2C2.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold279 SAMTools SNP 319699 319699 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold279 SAMTools SNP 319735 319735 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold279 SAMTools SNP 320182 320182 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 320214 320214 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold279 SAMTools SNP 320223 320223 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold279 SAMTools SNP 320865 320865 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 320877 320877 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold279 SAMTools SNP 321274 321274 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold279 SAMTools SNP 321323 321323 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.28%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold279 SAMTools SNP 321326 321326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold279 SAMTools SNP 321353 321353 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C12%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.077%2C0.42%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold279 SAMTools SNP 323513 323513 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold279 SAMTools SNP 323521 323521 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold279 SAMTools SNP 323861 323861 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold279 SAMTools SNP 324274 324274 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold279 SAMTools SNP 324346 324346 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold279 SAMTools SNP 324349 324349 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C104:99 scaffold279 SAMTools SNP 324633 324633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold279 SAMTools SNP 324678 324678 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C6%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.12%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold279 SAMTools SNP 325223 325223 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C21%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.12%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold279 SAMTools SNP 325254 325254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold279 SAMTools SNP 325664 325664 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold279 SAMTools SNP 325683 325683 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold279 SAMTools SNP 325761 325761 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold279 SAMTools SNP 325791 325791 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C155:99 scaffold279 SAMTools SNP 326232 326232 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C153:99 scaffold279 SAMTools SNP 326238 326238 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C240:99 scaffold279 SAMTools SNP 326346 326346 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C30%2C0:57 scaffold279 SAMTools SNP 326832 326832 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold279 SAMTools SNP 326900 326900 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold279 SAMTools SNP 326916 326916 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold279 SAMTools SNP 327593 327593 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold279 SAMTools SNP 327680 327680 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C21%2C0:35 scaffold279 SAMTools SNP 331300 331300 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D3%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C90%2C0:36 scaffold280 SAMTools SNP 53 53 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 297 297 68.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold280 SAMTools SNP 330 330 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold280 SAMTools SNP 546 546 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0302%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C23:26 scaffold280 SAMTools SNP 682 682 77.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold280 SAMTools SNP 1912 1912 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C54%2C0:99 scaffold280 SAMTools SNP 2439 2439 40.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold280 SAMTools SNP 2544 2544 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold280 SAMTools SNP 7046 7046 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold280 SAMTools SNP 7060 7060 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold280 SAMTools SNP 7072 7072 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold280 SAMTools SNP 7652 7652 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C234:99 scaffold280 SAMTools SNP 7731 7731 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold280 SAMTools SNP 7739 7739 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold280 SAMTools SNP 9076 9076 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold280 SAMTools SNP 9079 9079 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold280 SAMTools SNP 9353 9353 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold280 SAMTools SNP 9370 9370 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold280 SAMTools SNP 9730 9730 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 9733 9733 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 9960 9960 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 9981 9981 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 10057 10057 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 10097 10097 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold280 SAMTools SNP 10413 10413 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 11115 11115 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold280 SAMTools SNP 11454 11454 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold280 SAMTools SNP 14920 14920 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00078%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold280 SAMTools SNP 15220 15220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold280 SAMTools SNP 15811 15811 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold280 SAMTools SNP 17064 17064 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold280 SAMTools SNP 17068 17068 55.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold280 SAMTools SNP 18231 18231 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C60%2C0:99 scaffold280 SAMTools SNP 18369 18369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 18848 18848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold280 SAMTools SNP 19911 19911 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C42%2C0:81 scaffold280 SAMTools SNP 20510 20510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold280 SAMTools SNP 23042 23042 4.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C0%2C1%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C4%2C0:4 scaffold280 SAMTools SNP 24792 24792 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold280 SAMTools SNP 24816 24816 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold280 SAMTools SNP 24854 24854 28.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold280 SAMTools SNP 24908 24908 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00012%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold280 SAMTools SNP 25189 25189 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold280 SAMTools SNP 25216 25216 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold280 SAMTools SNP 27283 27283 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 27356 27356 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C90%2C34%2C29%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.77%2C3.1e-105%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold280 SAMTools SNP 27366 27366 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C21%2C26%3BMQ%3D50%3BFQ%3D-138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold280 SAMTools SNP 27416 27416 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C94%2C3%2C21%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.053%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold280 SAMTools SNP 27785 27785 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 36776 36776 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold280 SAMTools SNP 38200 38200 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold280 SAMTools SNP 38704 38704 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold280 SAMTools SNP 39964 39964 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold280 SAMTools SNP 40063 40063 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.48%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold280 SAMTools SNP 40243 40243 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 40487 40487 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 40507 40507 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold280 SAMTools SNP 40786 40786 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold280 SAMTools SNP 41000 41000 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold280 SAMTools SNP 41042 41042 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C223:99 scaffold280 SAMTools SNP 42232 42232 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold280 SAMTools SNP 42244 42244 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold280 SAMTools SNP 50034 50034 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 52261 52261 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 52764 52764 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold280 SAMTools SNP 52809 52809 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold280 SAMTools SNP 53263 53263 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold280 SAMTools SNP 54241 54241 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold280 SAMTools SNP 54369 54369 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.00065%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold280 SAMTools SNP 55962 55962 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold280 SAMTools SNP 56862 56862 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 56869 56869 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 58298 58298 54.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold280 SAMTools SNP 60725 60725 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 60775 60775 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 64242 64242 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 64590 64590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 64669 64669 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 64989 64989 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 68536 68536 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold280 SAMTools SNP 68767 68767 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D25%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C93%2C0:99 scaffold280 SAMTools SNP 74297 74297 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C125%2C6%3BMQ%3D38%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 75427 75427 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C12%3BMQ%3D45%3BFQ%3D172%3BPV4%3D0.074%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold280 SAMTools SNP 78480 78480 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C17%3BMQ%3D11%3BFQ%3D-57%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C30%2C0:37 scaffold280 SAMTools SNP 101288 101288 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D44%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold280 SAMTools SNP 103321 103321 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold280 SAMTools SNP 104400 104400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C17%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold280 SAMTools SNP 105578 105578 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold280 SAMTools SNP 106159 106159 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 106479 106479 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 106515 106515 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold280 SAMTools SNP 106524 106524 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold280 SAMTools SNP 108415 108415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold280 SAMTools SNP 108461 108461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold280 SAMTools SNP 108487 108487 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold280 SAMTools SNP 108493 108493 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold280 SAMTools SNP 125486 125486 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold280 SAMTools SNP 126257 126257 43.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold280 SAMTools SNP 127259 127259 6.34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.062%2C1.5e-20%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C2:7 scaffold280 SAMTools SNP 139817 139817 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C63%2C0:94 scaffold280 SAMTools SNP 140605 140605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C232%2C5%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 143136 143136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C187%2C10%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold280 SAMTools SNP 143164 143164 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold280 SAMTools SNP 143827 143827 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C30%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 145007 145007 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C30%2C13%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold280 SAMTools SNP 146199 146199 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold280 SAMTools SNP 146641 146641 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C29%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1.8e-06%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold280 SAMTools SNP 146680 146680 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold280 SAMTools SNP 147224 147224 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold280 SAMTools SNP 147230 147230 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold280 SAMTools SNP 147233 147233 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold280 SAMTools SNP 150583 150583 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C188:62 scaffold280 SAMTools SNP 155501 155501 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C148%2C97%2C73%3BMQ%3D50%3BFQ%3D163%3BPV4%3D5.8e-07%2C4.6e-156%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold280 SAMTools SNP 155904 155904 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C58:61 scaffold280 SAMTools SNP 156224 156224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D697%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold280 SAMTools SNP 157012 157012 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1239%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D13%2C62%2C1120%2C44%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D2.7e-62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 157051 157051 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2383%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1228%2C625%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0%2C1.9e-10%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 161013 161013 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C39:42 scaffold280 SAMTools SNP 161140 161140 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold280 SAMTools SNP 162281 162281 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.16%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold280 SAMTools SNP 163427 163427 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold280 SAMTools SNP 163464 163464 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 163989 163989 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold280 SAMTools SNP 164022 164022 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold280 SAMTools SNP 164032 164032 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold280 SAMTools SNP 165143 165143 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold280 SAMTools SNP 165161 165161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 165196 165196 57.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold280 SAMTools SNP 166349 166349 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 167278 167278 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold280 SAMTools SNP 167556 167556 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold280 SAMTools SNP 167661 167661 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.024%2C0.00038%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C222:28 scaffold280 SAMTools SNP 167713 167713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 168765 168765 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold280 SAMTools SNP 168796 168796 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0021%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold280 SAMTools SNP 168801 168801 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00012%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold280 SAMTools SNP 169129 169129 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold280 SAMTools SNP 169146 169146 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.54%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold280 SAMTools SNP 169186 169186 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C126:40 scaffold280 SAMTools SNP 169214 169214 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold280 SAMTools SNP 169297 169297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 169310 169310 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 183128 183128 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 190167 190167 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C47%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold280 SAMTools SNP 190590 190590 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold280 SAMTools SNP 190809 190809 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C72%2C0:99 scaffold280 SAMTools SNP 199765 199765 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold280 SAMTools SNP 214013 214013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 214267 214267 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold280 SAMTools SNP 216470 216470 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.53%2C0.24%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold280 SAMTools SNP 216559 216559 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C42%2C0:81 scaffold280 SAMTools SNP 236450 236450 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D488%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D267%2C12%2C207%2C0%3BMQ%3D42%3BFQ%3D181%3BPV4%3D0.0017%2C1%2C5.8e-16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold280 SAMTools SNP 237447 237447 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.096%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold280 SAMTools SNP 239787 239787 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold280 SAMTools SNP 239796 239796 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold280 SAMTools SNP 243028 243028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 243610 243610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C30%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 243650 243650 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 243673 243673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 243859 243859 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C11%2C84%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.054%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold280 SAMTools SNP 243895 243895 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.058%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold280 SAMTools SNP 244184 244184 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 246795 246795 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C11%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 247000 247000 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C52%2C0%2C12%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.016%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold280 SAMTools SNP 248247 248247 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.32%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold280 SAMTools SNP 248265 248265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold280 SAMTools SNP 248280 248280 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C3%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.51%2C0.15%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold280 SAMTools SNP 249656 249656 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.016%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold280 SAMTools SNP 249813 249813 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 255591 255591 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C38%2C6%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 255618 255618 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 255861 255861 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold280 SAMTools SNP 255942 255942 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold280 SAMTools SNP 255960 255960 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C16%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.078%2C1%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold280 SAMTools SNP 255972 255972 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C33%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 256357 256357 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C20%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 256662 256662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 256912 256912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold280 SAMTools SNP 257146 257146 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold280 SAMTools SNP 257185 257185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C28%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold280 SAMTools SNP 258040 258040 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C32%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold280 SAMTools SNP 258442 258442 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold280 SAMTools SNP 259147 259147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C35%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold280 SAMTools SNP 262071 262071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C2%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 262113 262113 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C1%2C15%3BMQ%3D49%3BFQ%3D132%3BPV4%3D0.24%2C8.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold280 SAMTools SNP 262147 262147 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold280 SAMTools SNP 275148 275148 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold280 SAMTools SNP 275238 275238 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 282254 282254 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 296107 296107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.36%2C0.16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold280 SAMTools SNP 296139 296139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold280 SAMTools SNP 296169 296169 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold280 SAMTools SNP 297048 297048 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C245:99 scaffold280 SAMTools SNP 299085 299085 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C250:99 scaffold280 SAMTools SNP 299367 299367 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C17%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold280 SAMTools SNP 304693 304693 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold280 SAMTools SNP 306386 306386 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold280 SAMTools SNP 306449 306449 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold280 SAMTools SNP 308509 308509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold280 SAMTools SNP 308563 308563 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0053%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold280 SAMTools SNP 308614 308614 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 308629 308629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 310027 310027 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C179%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 312318 312318 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 312330 312330 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C7%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C3.8e-09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold280 SAMTools SNP 312864 312864 35.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold280 SAMTools SNP 315830 315830 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D28%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C39%2C0:52 scaffold280 SAMTools SNP 318811 318811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold280 SAMTools SNP 320040 320040 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 320291 320291 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.1%2C0.00011%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C78:34 scaffold280 SAMTools SNP 327987 327987 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold280 SAMTools SNP 328493 328493 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold280 SAMTools SNP 332987 332987 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold280 SAMTools SNP 332989 332989 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold280 SAMTools SNP 333036 333036 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C250:99 scaffold280 SAMTools SNP 344830 344830 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.0013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C213:81 scaffold280 SAMTools SNP 353571 353571 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 357997 357997 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold280 SAMTools SNP 370236 370236 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold280 SAMTools SNP 370282 370282 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold280 SAMTools SNP 370726 370726 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C27%2C0:51 scaffold280 SAMTools SNP 411243 411243 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C29:32 scaffold280 SAMTools SNP 411294 411294 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold280 SAMTools SNP 415142 415142 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 415166 415166 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 415181 415181 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 416454 416454 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 416786 416786 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold280 SAMTools SNP 416829 416829 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold280 SAMTools SNP 416858 416858 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold280 SAMTools SNP 417533 417533 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold280 SAMTools SNP 418331 418331 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold280 SAMTools SNP 418359 418359 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold280 SAMTools SNP 418367 418367 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold280 SAMTools SNP 418913 418913 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold280 SAMTools SNP 419567 419567 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 419583 419583 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold280 SAMTools SNP 420158 420158 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.067%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C203:39 scaffold280 SAMTools SNP 420166 420166 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C84:87 scaffold280 SAMTools SNP 420196 420196 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C132:99 scaffold280 SAMTools SNP 420938 420938 55.8 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold280 SAMTools SNP 420944 420944 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold280 SAMTools SNP 422051 422051 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 422092 422092 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 423254 423254 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 423908 423908 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold280 SAMTools SNP 423995 423995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C18%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold280 SAMTools SNP 424373 424373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 424418 424418 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C27%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold280 SAMTools SNP 425120 425120 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.2%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C195:79 scaffold280 SAMTools SNP 425240 425240 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold280 SAMTools SNP 425249 425249 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold280 SAMTools SNP 425252 425252 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold280 SAMTools SNP 428316 428316 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold280 SAMTools SNP 434914 434914 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold280 SAMTools SNP 470718 470718 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C194:67 scaffold280 SAMTools SNP 473499 473499 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold280 SAMTools SNP 474948 474948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C27%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold280 SAMTools SNP 474963 474963 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C25%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold280 SAMTools SNP 477132 477132 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold280 SAMTools SNP 477600 477600 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold280 SAMTools SNP 477751 477751 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 518202 518202 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0057%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold280 SAMTools SNP 518590 518590 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold280 SAMTools SNP 518599 518599 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold280 SAMTools SNP 518623 518623 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold280 SAMTools SNP 519169 519169 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold280 SAMTools SNP 520050 520050 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.095%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold280 SAMTools SNP 521140 521140 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C233:83 scaffold280 SAMTools SNP 522266 522266 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold280 SAMTools SNP 523643 523643 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C233:99 scaffold280 SAMTools SNP 523686 523686 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 523928 523928 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold280 SAMTools SNP 526005 526005 201 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.13%2C0.22%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C74:77 scaffold280 SAMTools SNP 536257 536257 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold280 SAMTools SNP 551612 551612 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold280 SAMTools SNP 564779 564779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold280 SAMTools SNP 566497 566497 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C22%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 568785 568785 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 568811 568811 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 568984 568984 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold280 SAMTools SNP 568989 568989 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold280 SAMTools SNP 570219 570219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold280 SAMTools SNP 570256 570256 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C60%2C0:99 scaffold280 SAMTools SNP 571403 571403 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold280 SAMTools SNP 572841 572841 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold280 SAMTools SNP 572843 572843 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold280 SAMTools SNP 572907 572907 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold280 SAMTools SNP 593246 593246 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 593249 593249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 595968 595968 4.75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold280 SAMTools SNP 596391 596391 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold280 SAMTools SNP 596721 596721 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 596722 596722 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 613278 613278 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.059%2C5.9e-24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C235:96 scaffold280 SAMTools SNP 613350 613350 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.086%2C8.1e-14%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold280 SAMTools SNP 613416 613416 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C186:63 scaffold280 SAMTools SNP 615227 615227 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold280 SAMTools SNP 615379 615379 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold280 SAMTools SNP 633606 633606 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold280 SAMTools SNP 633760 633760 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold280 SAMTools SNP 646949 646949 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 647009 647009 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 670688 670688 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold280 SAMTools SNP 671113 671113 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 671134 671134 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold280 SAMTools SNP 682861 682861 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold280 SAMTools SNP 693684 693684 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold280 SAMTools SNP 693717 693717 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold280 SAMTools SNP 694871 694871 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold280 SAMTools SNP 695375 695375 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D93.6%3BPV4%3D1%2C9.2e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C121:99 scaffold280 SAMTools SNP 696513 696513 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C29:32 scaffold280 SAMTools SNP 698495 698495 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold280 SAMTools SNP 698497 698497 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold280 SAMTools SNP 705001 705001 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold280 SAMTools SNP 706132 706132 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0183%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.035%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold280 SAMTools SNP 707577 707577 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 709050 709050 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold280 SAMTools SNP 710467 710467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C19%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 713208 713208 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C23%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.00031%2C1%2C1%2C6.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold280 SAMTools SNP 713317 713317 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold280 SAMTools SNP 716518 716518 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 716527 716527 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold280 SAMTools SNP 730496 730496 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 730504 730504 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 730638 730638 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.44%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold280 SAMTools SNP 730685 730685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D45%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold280 SAMTools SNP 731151 731151 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C18%2C0%3BMQ%3D45%3BFQ%3D154%3BPV4%3D1%2C0.41%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold280 SAMTools SNP 731725 731725 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold280 SAMTools SNP 732031 732031 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C15%2C55%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 732364 732364 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C120%2C2%2C89%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 732550 732550 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C12%2C4%2C16%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1.3e-06%2C0.093%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold280 SAMTools SNP 732989 732989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C114%2C88%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold280 SAMTools SNP 733203 733203 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C27%2C37%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.25%2C0.16%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 733223 733223 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C94%2C26%2C0%3BMQ%3D49%3BFQ%3D61%3BPV4%3D2.7e-18%2C1.6e-19%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold280 SAMTools SNP 739921 739921 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 739925 739925 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 743419 743419 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold280 SAMTools SNP 743464 743464 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold280 SAMTools SNP 743479 743479 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold280 SAMTools SNP 743943 743943 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold280 SAMTools SNP 743958 743958 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold280 SAMTools SNP 744000 744000 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold280 SAMTools SNP 744228 744228 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.22%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C134:33 scaffold280 SAMTools SNP 744252 744252 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold280 SAMTools SNP 744279 744279 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 745180 745180 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.086%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold280 SAMTools SNP 745192 745192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold280 SAMTools SNP 745219 745219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 745650 745650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C26%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold280 SAMTools SNP 745710 745710 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 746328 746328 120 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C9%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold280 SAMTools SNP 746331 746331 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold280 SAMTools SNP 746466 746466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold280 SAMTools SNP 746805 746805 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C221:99 scaffold280 SAMTools SNP 746811 746811 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.019%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C204:99 scaffold280 SAMTools SNP 746946 746946 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold280 SAMTools SNP 747183 747183 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold280 SAMTools SNP 747243 747243 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold280 SAMTools SNP 747357 747357 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold280 SAMTools SNP 747798 747798 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold280 SAMTools SNP 747807 747807 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold280 SAMTools SNP 748034 748034 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold280 SAMTools SNP 748890 748890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold280 SAMTools SNP 748931 748931 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold280 SAMTools SNP 748967 748967 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 749476 749476 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold280 SAMTools SNP 749521 749521 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold280 SAMTools SNP 749554 749554 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold280 SAMTools SNP 749584 749584 217 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5%2C228%2C0%2C225:81 scaffold280 SAMTools SNP 749934 749934 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold280 SAMTools SNP 750829 750829 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold280 SAMTools SNP 751337 751337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold280 SAMTools SNP 751349 751349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold280 SAMTools SNP 755724 755724 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 755767 755767 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold280 SAMTools SNP 756438 756438 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold280 SAMTools SNP 756742 756742 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold280 SAMTools SNP 757400 757400 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold280 SAMTools SNP 757430 757430 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold280 SAMTools SNP 760092 760092 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold280 SAMTools SNP 760703 760703 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold280 SAMTools SNP 760739 760739 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold280 SAMTools SNP 760742 760742 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold280 SAMTools SNP 760983 760983 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.094%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold280 SAMTools SNP 764929 764929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold280 SAMTools SNP 764935 764935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold280 SAMTools SNP 765123 765123 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold280 SAMTools SNP 765530 765530 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C25%2C64%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 766131 766131 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold280 SAMTools SNP 766277 766277 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold280 SAMTools SNP 766304 766304 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C210:99 scaffold280 SAMTools SNP 768118 768118 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold280 SAMTools SNP 768531 768531 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.012%2C0.016%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold280 SAMTools SNP 768537 768537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold280 SAMTools SNP 769945 769945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold280 SAMTools SNP 769978 769978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold280 SAMTools SNP 770112 770112 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold280 SAMTools SNP 770171 770171 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold280 SAMTools SNP 770681 770681 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.068%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold280 SAMTools SNP 772432 772432 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C24%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 772706 772706 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 772784 772784 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C83%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold280 SAMTools SNP 774086 774086 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold280 SAMTools SNP 777314 777314 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold280 SAMTools SNP 779134 779134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold280 SAMTools SNP 781878 781878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold280 SAMTools SNP 790039 790039 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C145:99 scaffold280 SAMTools SNP 838583 838583 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold280 SAMTools SNP 878480 878480 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold280 SAMTools SNP 894792 894792 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C1.4e-22%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C169:47 scaffold280 SAMTools SNP 897565 897565 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold280 SAMTools SNP 923971 923971 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 941779 941779 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold280 SAMTools SNP 947824 947824 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold280 SAMTools SNP 947868 947868 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold280 SAMTools SNP 948557 948557 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 948561 948561 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold280 SAMTools SNP 954484 954484 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold280 SAMTools SNP 954505 954505 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold281 SAMTools SNP 5664 5664 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold281 SAMTools SNP 9703 9703 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold281 SAMTools SNP 9746 9746 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold281 SAMTools SNP 82350 82350 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold281 SAMTools SNP 82826 82826 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold281 SAMTools SNP 83558 83558 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold281 SAMTools SNP 84936 84936 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold281 SAMTools SNP 86568 86568 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold281 SAMTools SNP 109109 109109 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold281 SAMTools SNP 111137 111137 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold281 SAMTools SNP 111139 111139 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold281 SAMTools SNP 111671 111671 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold281 SAMTools SNP 111692 111692 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold281 SAMTools SNP 112223 112223 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold281 SAMTools SNP 112477 112477 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C19%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.023%2C0.0069%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold281 SAMTools SNP 112499 112499 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C33%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C232:99 scaffold281 SAMTools SNP 112514 112514 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C22%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C253:99 scaffold281 SAMTools SNP 115150 115150 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C242:99 scaffold281 SAMTools SNP 115533 115533 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold281 SAMTools SNP 115534 115534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold281 SAMTools SNP 119904 119904 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold281 SAMTools SNP 119928 119928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold281 SAMTools SNP 120658 120658 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold281 SAMTools SNP 121899 121899 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold281 SAMTools SNP 121958 121958 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.43%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C250:99 scaffold281 SAMTools SNP 122266 122266 165 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C57%2C255%2C0%2C254:57 scaffold281 SAMTools SNP 122302 122302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold281 SAMTools SNP 122364 122364 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold281 SAMTools SNP 124507 124507 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold281 SAMTools SNP 124642 124642 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C105%2C0:99 scaffold281 SAMTools SNP 125513 125513 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C144:85 scaffold281 SAMTools SNP 125535 125535 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold281 SAMTools SNP 125580 125580 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.61%2C0.056%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold281 SAMTools SNP 125961 125961 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold281 SAMTools SNP 125971 125971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold281 SAMTools SNP 126031 126031 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold281 SAMTools SNP 126048 126048 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold281 SAMTools SNP 127107 127107 38.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold281 SAMTools SNP 127738 127738 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold281 SAMTools SNP 132828 132828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C176%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold281 SAMTools SNP 134485 134485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold281 SAMTools SNP 134879 134879 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold281 SAMTools SNP 134888 134888 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.00044%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold281 SAMTools SNP 134903 134903 96.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold281 SAMTools SNP 134963 134963 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C4%2C54%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 137142 137142 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C20%2C83%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 138216 138216 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold281 SAMTools SNP 140699 140699 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C116%2C23%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 140723 140723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C51%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold281 SAMTools SNP 140729 140729 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C88%2C0%2C28%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.59%2C1%2C1%2C7.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold281 SAMTools SNP 140741 140741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold281 SAMTools SNP 141331 141331 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold281 SAMTools SNP 142093 142093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 142114 142114 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C3.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 142129 142129 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C2.1e-09%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 143010 143010 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C13%2C14%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0092%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold281 SAMTools SNP 144220 144220 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C85%2C0%2C18%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.35%2C1%2C1%2C5.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold281 SAMTools SNP 144247 144247 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold281 SAMTools SNP 144762 144762 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C10%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.06%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold281 SAMTools SNP 144780 144780 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold281 SAMTools SNP 144783 144783 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold281 SAMTools SNP 146470 146470 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 146519 146519 103 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C0%2C21%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.053%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold281 SAMTools SNP 147185 147185 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold281 SAMTools SNP 147206 147206 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C103%2C37%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1.1e-29%2C0.0057%2C1%2C1.2e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold281 SAMTools SNP 147242 147242 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold281 SAMTools SNP 147928 147928 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C0%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold281 SAMTools SNP 156344 156344 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 8364 8364 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C24%2C0:45 scaffold285 SAMTools SNP 8382 8382 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold285 SAMTools SNP 10100 10100 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C21%3BMQ%3D50%3BFQ%3D84.8%3BPV4%3D0.16%2C1.3e-33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C126:99 scaffold285 SAMTools SNP 11082 11082 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold285 SAMTools SNP 12274 12274 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C96%2C1%2C13%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.42%2C1%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold285 SAMTools SNP 12938 12938 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C39%2C0%2C21%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold285 SAMTools SNP 12950 12950 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C0%2C21%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C245:99 scaffold285 SAMTools SNP 14098 14098 134 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.5%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold285 SAMTools SNP 14672 14672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C81%2C9%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 14837 14837 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold285 SAMTools SNP 14885 14885 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.078%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold285 SAMTools SNP 14963 14963 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0019%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold285 SAMTools SNP 15710 15710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 15858 15858 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C45%2C0:87 scaffold285 SAMTools SNP 16266 16266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold285 SAMTools SNP 16508 16508 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold285 SAMTools SNP 16511 16511 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold285 SAMTools SNP 16566 16566 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold285 SAMTools SNP 17480 17480 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C248:99 scaffold285 SAMTools SNP 17759 17759 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold285 SAMTools SNP 19145 19145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold285 SAMTools SNP 19458 19458 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold285 SAMTools SNP 19605 19605 173 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C47%2C26%2C194%2C0%2C191:39 scaffold285 SAMTools SNP 20653 20653 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C210:99 scaffold285 SAMTools SNP 20665 20665 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C223:99 scaffold285 SAMTools SNP 21303 21303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 21996 21996 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C13%2C27%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 22062 22062 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C18%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.13%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold285 SAMTools SNP 22644 22644 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.52%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold285 SAMTools SNP 25772 25772 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 26036 26036 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold285 SAMTools SNP 26590 26590 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D988%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D178%2C157%2C329%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 27790 27790 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold285 SAMTools SNP 28107 28107 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 28173 28173 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1887%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1596%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 28176 28176 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1648%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1355%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 28248 28248 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4643%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D478%2C3063%2C81%2C898%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D6.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold285 SAMTools SNP 28252 28252 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4658%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C573%2C3406%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 29781 29781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D665%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C483%2C181%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 41305 41305 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold285 SAMTools SNP 41340 41340 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold285 SAMTools SNP 41523 41523 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold285 SAMTools SNP 43055 43055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold285 SAMTools SNP 43449 43449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 45394 45394 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 45397 45397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 45418 45418 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold285 SAMTools SNP 46015 46015 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold285 SAMTools SNP 46066 46066 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold285 SAMTools SNP 46978 46978 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold285 SAMTools SNP 47575 47575 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 48320 48320 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.018%2C0.00047%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C157:64 scaffold285 SAMTools SNP 48337 48337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 49299 49299 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C185:99 scaffold285 SAMTools SNP 49733 49733 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold285 SAMTools SNP 49764 49764 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold285 SAMTools SNP 50198 50198 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C1%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold285 SAMTools SNP 53419 53419 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold285 SAMTools SNP 71645 71645 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D1%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold285 SAMTools SNP 71665 71665 69.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold285 SAMTools SNP 75284 75284 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold285 SAMTools SNP 75799 75799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C21%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold285 SAMTools SNP 76255 76255 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 76406 76406 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C5%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold285 SAMTools SNP 76630 76630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold285 SAMTools SNP 76642 76642 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.56%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold285 SAMTools SNP 76964 76964 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.013%2C1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold285 SAMTools SNP 76977 76977 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold285 SAMTools SNP 76982 76982 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold285 SAMTools SNP 77257 77257 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold285 SAMTools SNP 77341 77341 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 77831 77831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold285 SAMTools SNP 78082 78082 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C0%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 79712 79712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold285 SAMTools SNP 80905 80905 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold285 SAMTools SNP 80913 80913 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold285 SAMTools SNP 81229 81229 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold285 SAMTools SNP 81562 81562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 84314 84314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 88220 88220 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C38:41 scaffold285 SAMTools SNP 91335 91335 80.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold285 SAMTools SNP 92233 92233 26.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C13:16 scaffold285 SAMTools SNP 92736 92736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C12%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold285 SAMTools SNP 94455 94455 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 95292 95292 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold285 SAMTools SNP 101872 101872 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C255%2C0:99 scaffold285 SAMTools SNP 102117 102117 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1250%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold285 SAMTools SNP 102144 102144 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1184%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C41%2C1098%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 102598 102598 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold285 SAMTools SNP 102607 102607 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold285 SAMTools SNP 102623 102623 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C3%2C0:6 scaffold285 SAMTools SNP 102637 102637 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C2%2C10%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.085%2C9.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold285 SAMTools SNP 102654 102654 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C5%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.4e-19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold285 SAMTools SNP 102766 102766 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C31%2C4%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.32%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold285 SAMTools SNP 102774 102774 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C37%2C4%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.23%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold285 SAMTools SNP 104557 104557 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold285 SAMTools SNP 104796 104796 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C39%2C73%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-07%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 104805 104805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C47%2C34%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 104838 104838 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C62%2C9%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 105090 105090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold285 SAMTools SNP 105123 105123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C16%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold285 SAMTools SNP 105141 105141 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold285 SAMTools SNP 105315 105315 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold285 SAMTools SNP 105352 105352 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold285 SAMTools SNP 105480 105480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C37%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D0.16%2C0.39%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold285 SAMTools SNP 105722 105722 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C45%2C0:87 scaffold285 SAMTools SNP 105762 105762 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C54%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C217%2C0:99 scaffold285 SAMTools SNP 106092 106092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C48%2C29%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C9.7e-25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 108642 108642 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C45%2C24%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 109910 109910 54.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold285 SAMTools SNP 110196 110196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C57%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 111473 111473 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C134%2C105%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 115322 115322 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold285 SAMTools SNP 117916 117916 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold285 SAMTools SNP 118932 118932 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold285 SAMTools SNP 119376 119376 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold285 SAMTools SNP 119377 119377 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold285 SAMTools SNP 121404 121404 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold285 SAMTools SNP 122468 122468 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold285 SAMTools SNP 122564 122564 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold285 SAMTools SNP 123250 123250 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold285 SAMTools SNP 123280 123280 86.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold285 SAMTools SNP 123333 123333 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold285 SAMTools SNP 123637 123637 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold285 SAMTools SNP 123677 123677 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold285 SAMTools SNP 123686 123686 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold285 SAMTools SNP 123701 123701 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold285 SAMTools SNP 123862 123862 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold285 SAMTools SNP 124083 124083 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold285 SAMTools SNP 124522 124522 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold285 SAMTools SNP 124549 124549 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold285 SAMTools SNP 131858 131858 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold285 SAMTools SNP 134699 134699 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.37%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold285 SAMTools SNP 135482 135482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C16%2C59%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 136067 136067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold285 SAMTools SNP 136121 136121 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C77%2C14:99 scaffold285 SAMTools SNP 137176 137176 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 148560 148560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C46%2C126%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 148637 148637 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C196%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 148691 148691 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C69%2C63%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 148694 148694 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C66%2C58%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 148709 148709 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D378%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C180%2C197%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.48%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold285 SAMTools SNP 149534 149534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold285 SAMTools SNP 149772 149772 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold285 SAMTools SNP 149828 149828 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold285 SAMTools SNP 149987 149987 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold285 SAMTools SNP 150014 150014 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C57%2C21%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D4.6e-06%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold285 SAMTools SNP 150322 150322 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D676%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold285 SAMTools SNP 150336 150336 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D668%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold285 SAMTools SNP 150720 150720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C31%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold285 SAMTools SNP 150769 150769 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D0.083%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C51:43 scaffold285 SAMTools SNP 150770 150770 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C16%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.12%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C71:55 scaffold285 SAMTools SNP 151317 151317 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.2%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C143:99 scaffold285 SAMTools SNP 156984 156984 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D49.6%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C77:80 scaffold285 SAMTools SNP 160291 160291 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold285 SAMTools SNP 162367 162367 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold285 SAMTools SNP 176718 176718 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold285 SAMTools SNP 176783 176783 16.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C27%2C46%2C0%2C43:6 scaffold285 SAMTools SNP 179141 179141 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C117%2C0:99 scaffold285 SAMTools SNP 179221 179221 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold285 SAMTools SNP 181909 181909 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold285 SAMTools SNP 184355 184355 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C10%2C1%3BMQ%3D31%3BFQ%3D22%3BPV4%3D1%2C1%2C0.051%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C232:52 scaffold285 SAMTools SNP 186708 186708 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C8%3BMQ%3D15%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C255%2C0:99 scaffold285 SAMTools SNP 187308 187308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C65%2C51%2C54%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.79%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 187515 187515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C0%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 187590 187590 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C7%3BMQ%3D49%3BFQ%3D162%3BPV4%3D0.1%2C0.4%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold285 SAMTools SNP 187625 187625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 187934 187934 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C11%2C35%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.015%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold285 SAMTools SNP 188682 188682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 189217 189217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 189228 189228 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.35%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold285 SAMTools SNP 190365 190365 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C49%2C33%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold285 SAMTools SNP 192518 192518 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C185:99 scaffold285 SAMTools SNP 197307 197307 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold285 SAMTools SNP 199857 199857 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold285 SAMTools SNP 202863 202863 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold285 SAMTools SNP 203233 203233 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C51%2C0:96 scaffold285 SAMTools SNP 203293 203293 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.14%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold285 SAMTools SNP 203298 203298 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold285 SAMTools SNP 203718 203718 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold285 SAMTools SNP 204006 204006 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C0:57 scaffold285 SAMTools SNP 204799 204799 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold285 SAMTools SNP 204904 204904 62.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold285 SAMTools SNP 204923 204923 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold285 SAMTools SNP 242612 242612 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold286 SAMTools SNP 76 76 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold286 SAMTools SNP 309 309 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C69%2C2%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.68%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold286 SAMTools SNP 16450 16450 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold286 SAMTools SNP 16480 16480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold286 SAMTools SNP 17579 17579 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold286 SAMTools SNP 20376 20376 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 38386 38386 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold286 SAMTools SNP 38446 38446 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C39%2C0:62 scaffold286 SAMTools SNP 40354 40354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C66%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold286 SAMTools SNP 58256 58256 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold286 SAMTools SNP 59927 59927 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold286 SAMTools SNP 64740 64740 56.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold286 SAMTools SNP 67874 67874 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold286 SAMTools SNP 79768 79768 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold286 SAMTools SNP 79825 79825 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C102%2C0:99 scaffold286 SAMTools SNP 115817 115817 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C9.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold286 SAMTools SNP 116099 116099 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C11%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.00018%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 116518 116518 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C34%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold286 SAMTools SNP 116623 116623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold286 SAMTools SNP 117070 117070 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.55%2C0.069%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold286 SAMTools SNP 117076 117076 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.53%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold286 SAMTools SNP 117184 117184 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C7.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold286 SAMTools SNP 119292 119292 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.059%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold286 SAMTools SNP 119325 119325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C47%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold286 SAMTools SNP 119688 119688 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.24%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold286 SAMTools SNP 119745 119745 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold286 SAMTools SNP 120162 120162 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold286 SAMTools SNP 122575 122575 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C3%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.35%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold286 SAMTools SNP 128560 128560 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C6.3e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C154:37 scaffold286 SAMTools SNP 128785 128785 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C1%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold286 SAMTools SNP 128806 128806 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C1%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold286 SAMTools SNP 133994 133994 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold286 SAMTools SNP 151918 151918 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold286 SAMTools SNP 152874 152874 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold286 SAMTools SNP 173240 173240 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold286 SAMTools SNP 183503 183503 29.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold286 SAMTools SNP 184874 184874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 185634 185634 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold286 SAMTools SNP 204167 204167 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold286 SAMTools SNP 208242 208242 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold286 SAMTools SNP 208858 208858 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold286 SAMTools SNP 247258 247258 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold286 SAMTools SNP 254717 254717 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold286 SAMTools SNP 258216 258216 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 259593 259593 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold286 SAMTools SNP 259601 259601 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold286 SAMTools SNP 262144 262144 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 262145 262145 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 315990 315990 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C23%2C2%3BMQ%3D34%3BFQ%3D26%3BPV4%3D0.21%2C1%2C1.6e-09%2C1.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C240:56 scaffold286 SAMTools SNP 316055 316055 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold286 SAMTools SNP 316056 316056 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold286 SAMTools SNP 316307 316307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C64%2C8%3BMQ%3D31%3BFQ%3D225%3BPV4%3D0.00071%2C1%2C0.045%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 316370 316370 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C54%2C68%2C18%3BMQ%3D13%3BFQ%3D89.5%3BPV4%3D5.2e-05%2C0.054%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C120:99 scaffold286 SAMTools SNP 327261 327261 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C62%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold286 SAMTools SNP 328611 328611 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold286 SAMTools SNP 328927 328927 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold286 SAMTools SNP 328957 328957 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C12%2C20%3BMQ%3D36%3BFQ%3D130%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C157:99 scaffold286 SAMTools SNP 331524 331524 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C64%2C70%2C233%3BMQ%3D49%3BFQ%3D161%3BPV4%3D0.65%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold286 SAMTools SNP 331664 331664 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C242%2C19%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 331846 331846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C71%2C23%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 331861 331861 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C75%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 332231 332231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C23%2C87%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 332389 332389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C3%2C89%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 332409 332409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C49%2C36%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 332427 332427 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C178%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold286 SAMTools SNP 332757 332757 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold286 SAMTools SNP 332799 332799 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C196%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold286 SAMTools SNP 332949 332949 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C65%2C5%2C11%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold286 SAMTools SNP 332975 332975 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C39%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold286 SAMTools SNP 332981 332981 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C47%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold286 SAMTools SNP 334122 334122 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold286 SAMTools SNP 334128 334128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold286 SAMTools SNP 334800 334800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold286 SAMTools SNP 337320 337320 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold286 SAMTools SNP 337329 337329 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold286 SAMTools SNP 337330 337330 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.56%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold286 SAMTools SNP 337878 337878 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C197%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold286 SAMTools SNP 338347 338347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 338659 338659 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.076%2C1.4e-08%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold286 SAMTools SNP 339016 339016 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 339094 339094 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.23%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold286 SAMTools SNP 340172 340172 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C28%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold286 SAMTools SNP 340790 340790 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold286 SAMTools SNP 341025 341025 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.54%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold286 SAMTools SNP 343717 343717 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold286 SAMTools SNP 344352 344352 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0104%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.37%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold286 SAMTools SNP 344369 344369 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold286 SAMTools SNP 344992 344992 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C37%3BMQ%3D50%3BFQ%3D-5.46%3BPV4%3D0.075%2C1.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C23:26 scaffold286 SAMTools SNP 357025 357025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 357081 357081 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold286 SAMTools SNP 357117 357117 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold286 SAMTools SNP 357125 357125 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold286 SAMTools SNP 357914 357914 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 357937 357937 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 357965 357965 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 358121 358121 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 384758 384758 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C40:41 scaffold286 SAMTools SNP 385307 385307 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold286 SAMTools SNP 385359 385359 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 389759 389759 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold286 SAMTools SNP 396673 396673 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 397413 397413 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 397441 397441 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 399327 399327 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold286 SAMTools SNP 401006 401006 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold286 SAMTools SNP 401087 401087 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold286 SAMTools SNP 403264 403264 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold286 SAMTools SNP 403294 403294 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold286 SAMTools SNP 404740 404740 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 405050 405050 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold286 SAMTools SNP 405107 405107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold286 SAMTools SNP 405126 405126 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold286 SAMTools SNP 405147 405147 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold286 SAMTools SNP 406863 406863 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold286 SAMTools SNP 407070 407070 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold286 SAMTools SNP 424741 424741 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold286 SAMTools SNP 427720 427720 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold286 SAMTools SNP 428887 428887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold286 SAMTools SNP 428937 428937 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold286 SAMTools SNP 429049 429049 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold286 SAMTools SNP 432538 432538 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold286 SAMTools SNP 437145 437145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold287 SAMTools SNP 366 366 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold287 SAMTools SNP 521 521 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold287 SAMTools SNP 814 814 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C20%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.35%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C135:99 scaffold287 SAMTools SNP 19848 19848 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D865%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C835%2C28%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.066%2C0.46%2C0.47%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold287 SAMTools SNP 21597 21597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C330%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1.7e-55;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold287 SAMTools SNP 25116 25116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D967%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C18%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C0.45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold287 SAMTools SNP 69898 69898 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D51%2C0%2C14%2C2%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.054%2C4.2e-42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C228:34 scaffold287 SAMTools SNP 69942 69942 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold287 SAMTools SNP 70220 70220 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C4%2C9%3BMQ%3D46%3BFQ%3D61%3BPV4%3D0.51%2C2e-19%2C0.46%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold288 SAMTools SNP 150 150 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 13231 13231 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold288 SAMTools SNP 18666 18666 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold288 SAMTools SNP 27609 27609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold288 SAMTools SNP 29598 29598 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold288 SAMTools SNP 29646 29646 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold288 SAMTools SNP 30047 30047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C41%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold288 SAMTools SNP 31965 31965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C13%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold288 SAMTools SNP 32009 32009 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C14%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.65%2C7.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold288 SAMTools SNP 32298 32298 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 33149 33149 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.47%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold288 SAMTools SNP 33751 33751 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.17%2C0.087%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C221:88 scaffold288 SAMTools SNP 34394 34394 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold288 SAMTools SNP 34597 34597 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold288 SAMTools SNP 35264 35264 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold288 SAMTools SNP 40068 40068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold288 SAMTools SNP 41370 41370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold288 SAMTools SNP 45331 45331 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.036%2C9.9e-10%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C177:39 scaffold288 SAMTools SNP 45356 45356 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.49%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold288 SAMTools SNP 118842 118842 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold288 SAMTools SNP 118847 118847 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold288 SAMTools SNP 120178 120178 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold288 SAMTools SNP 120231 120231 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 122945 122945 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold288 SAMTools SNP 123002 123002 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold288 SAMTools SNP 154991 154991 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold288 SAMTools SNP 155013 155013 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold288 SAMTools SNP 155158 155158 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold288 SAMTools SNP 155259 155259 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold288 SAMTools SNP 155286 155286 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold288 SAMTools SNP 155436 155436 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold288 SAMTools SNP 155656 155656 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 155670 155670 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 155777 155777 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold288 SAMTools SNP 156013 156013 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold288 SAMTools SNP 156905 156905 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold288 SAMTools SNP 157068 157068 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold288 SAMTools SNP 157292 157292 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.074%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold288 SAMTools SNP 157935 157935 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 157955 157955 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.044%2C0.12%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold288 SAMTools SNP 157969 157969 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold288 SAMTools SNP 157992 157992 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C200:99 scaffold288 SAMTools SNP 158033 158033 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C197:99 scaffold288 SAMTools SNP 160224 160224 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold288 SAMTools SNP 160367 160367 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold288 SAMTools SNP 160380 160380 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold288 SAMTools SNP 173188 173188 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold288 SAMTools SNP 173206 173206 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 175088 175088 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold288 SAMTools SNP 184202 184202 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 184223 184223 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 186334 186334 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold288 SAMTools SNP 187041 187041 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold288 SAMTools SNP 211924 211924 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold288 SAMTools SNP 214279 214279 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 214466 214466 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold288 SAMTools SNP 214520 214520 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C84%2C0:99 scaffold288 SAMTools SNP 214670 214670 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C9.2e-12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C201:41 scaffold288 SAMTools SNP 214759 214759 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C7%2C15%3BMQ%3D41%3BFQ%3D113%3BPV4%3D0.44%2C0.28%2C2.2e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold288 SAMTools SNP 215056 215056 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold288 SAMTools SNP 215429 215429 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold288 SAMTools SNP 215650 215650 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C4%3BMQ%3D37%3BFQ%3D87%3BPV4%3D0.021%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C115:99 scaffold288 SAMTools SNP 215655 215655 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold288 SAMTools SNP 215724 215724 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C30%2C3%2C2%3BMQ%3D39%3BFQ%3D6.99%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold288 SAMTools SNP 215736 215736 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C23%3BMQ%3D39%3BFQ%3D-143%3BPV4%3D1%2C0.35%2C0.22%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C116%2C0:99 scaffold288 SAMTools SNP 215774 215774 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 215796 215796 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C2%2C3%3BMQ%3D40%3BFQ%3D12.3%3BPV4%3D1%2C2.1e-07%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold288 SAMTools SNP 215801 215801 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C0%2C5%3BMQ%3D39%3BFQ%3D21%3BPV4%3D0.14%2C0.091%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold288 SAMTools SNP 216028 216028 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C33%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.15%2C1.7e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold288 SAMTools SNP 216355 216355 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C2%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.013%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C222:83 scaffold288 SAMTools SNP 216378 216378 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C6%3BMQ%3D41%3BFQ%3D-40%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C13%2C0:23 scaffold288 SAMTools SNP 217385 217385 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold288 SAMTools SNP 217997 217997 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C15%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.7%2C4.7e-14%2C0.0041%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 218074 218074 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C8%3BMQ%3D45%3BFQ%3D224%3BPV4%3D0.28%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold288 SAMTools SNP 218089 218089 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold288 SAMTools SNP 218101 218101 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.56%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold288 SAMTools SNP 218673 218673 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold288 SAMTools SNP 218840 218840 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C6%3BMQ%3D47%3BFQ%3D-13.2%3BPV4%3D0.5%2C1%2C0.3%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold288 SAMTools SNP 219467 219467 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold288 SAMTools SNP 219495 219495 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 219797 219797 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 219962 219962 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold288 SAMTools SNP 220041 220041 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold288 SAMTools SNP 220795 220795 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 223564 223564 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D29.6%3BPV4%3D1%2C1e-16%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C67:60 scaffold288 SAMTools SNP 226337 226337 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold288 SAMTools SNP 237791 237791 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold288 SAMTools SNP 237821 237821 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 238459 238459 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 238555 238555 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 238579 238579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C22%2C227%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00021%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C46:49 scaffold288 SAMTools SNP 239342 239342 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C21%2C74%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 240169 240169 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C132%2C69%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 240590 240590 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold288 SAMTools SNP 240617 240617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C48%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold288 SAMTools SNP 241195 241195 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C114%3BMQ%3D50%3BFQ%3D-191;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C91:99 scaffold288 SAMTools SNP 241258 241258 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold288 SAMTools SNP 241306 241306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C54%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold288 SAMTools SNP 241582 241582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C68%2C126%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 241585 241585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D224%2C111%2C83%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 241642 241642 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D716%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C565%2C128%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 241705 241705 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D790%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C385%2C7%2C223%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-12%2C1%2C1%2C1.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 241744 241744 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D633%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C335%2C15%2C235%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 267309 267309 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold288 SAMTools SNP 302159 302159 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold288 SAMTools SNP 335076 335076 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold288 SAMTools SNP 353023 353023 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold288 SAMTools SNP 353039 353039 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold288 SAMTools SNP 361936 361936 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 362130 362130 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold288 SAMTools SNP 362139 362139 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C27%2C0:51 scaffold288 SAMTools SNP 367786 367786 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold288 SAMTools SNP 378300 378300 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold288 SAMTools SNP 378627 378627 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D0.25%2C0.00085%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold288 SAMTools SNP 379889 379889 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C51%2C0:99 scaffold288 SAMTools SNP 381291 381291 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C15%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.37%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C42:45 scaffold288 SAMTools SNP 382547 382547 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C94:97 scaffold288 SAMTools SNP 389229 389229 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold288 SAMTools SNP 398649 398649 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold288 SAMTools SNP 410238 410238 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold288 SAMTools SNP 410300 410300 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 410309 410309 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold288 SAMTools SNP 410363 410363 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold288 SAMTools SNP 410759 410759 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C142:99 scaffold288 SAMTools SNP 410793 410793 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold288 SAMTools SNP 413144 413144 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.48%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C213:72 scaffold288 SAMTools SNP 413151 413151 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold288 SAMTools SNP 413479 413479 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold288 SAMTools SNP 413488 413488 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold288 SAMTools SNP 414857 414857 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.089%2C1.2e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold288 SAMTools SNP 414919 414919 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C75%2C0:99 scaffold288 SAMTools SNP 415235 415235 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold288 SAMTools SNP 416016 416016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 423391 423391 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold288 SAMTools SNP 423436 423436 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold288 SAMTools SNP 424246 424246 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold288 SAMTools SNP 424369 424369 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.1%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold288 SAMTools SNP 424946 424946 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C212:99 scaffold288 SAMTools SNP 425135 425135 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold288 SAMTools SNP 425895 425895 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C197:57 scaffold288 SAMTools SNP 425986 425986 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold288 SAMTools SNP 428659 428659 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 428797 428797 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.47%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold288 SAMTools SNP 428804 428804 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold288 SAMTools SNP 428808 428808 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold288 SAMTools SNP 429335 429335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 429377 429377 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.14%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold288 SAMTools SNP 431211 431211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C35%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold288 SAMTools SNP 433325 433325 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.58%2C2.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C212:95 scaffold288 SAMTools SNP 435525 435525 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C51%2C0:99 scaffold288 SAMTools SNP 435601 435601 50.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold288 SAMTools SNP 435967 435967 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C14%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0067%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold288 SAMTools SNP 435986 435986 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C43%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 436284 436284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C10%2C53%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 437106 437106 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 437127 437127 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C9%2C48%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D0.0014%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C17%2C0:31 scaffold288 SAMTools SNP 437139 437139 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold288 SAMTools SNP 437843 437843 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C21%2C5%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.45%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold288 SAMTools SNP 438135 438135 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C37%2C3%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.35%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold288 SAMTools SNP 438194 438194 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D26%2C47%2C1%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold288 SAMTools SNP 438224 438224 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C34%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 438937 438937 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 438981 438981 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C10%2C11%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.39%2C3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold288 SAMTools SNP 439054 439054 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold288 SAMTools SNP 439092 439092 205 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C0.049%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C243:99 scaffold288 SAMTools SNP 439094 439094 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.4%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C238:99 scaffold288 SAMTools SNP 439096 439096 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C15%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.4%2C0.068%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C241:99 scaffold288 SAMTools SNP 439269 439269 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold288 SAMTools SNP 441031 441031 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold288 SAMTools SNP 445346 445346 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D749%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C524%2C215%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 447093 447093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C26%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0021%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 457913 457913 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.4%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 460007 460007 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.23%2C0.22%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold288 SAMTools SNP 460176 460176 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.051%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold288 SAMTools SNP 461025 461025 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold288 SAMTools SNP 461072 461072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 461326 461326 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 461374 461374 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 461759 461759 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 463295 463295 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C245:99 scaffold288 SAMTools SNP 463305 463305 181 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold288 SAMTools SNP 466137 466137 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold288 SAMTools SNP 466254 466254 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold288 SAMTools SNP 466756 466756 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C87%2C15%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.6%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold288 SAMTools SNP 466818 466818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C68%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 466861 466861 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C60%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold288 SAMTools SNP 466885 466885 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 466903 466903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C73%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0065%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 467862 467862 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold288 SAMTools SNP 467878 467878 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C12%2C9%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold288 SAMTools SNP 467895 467895 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold288 SAMTools SNP 468421 468421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C32%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.013%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold288 SAMTools SNP 468475 468475 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold288 SAMTools SNP 474143 474143 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D549%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C231%2C15%2C251%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 474194 474194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold288 SAMTools SNP 474299 474299 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 474512 474512 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 474568 474568 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold288 SAMTools SNP 474631 474631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.0022%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold288 SAMTools SNP 474785 474785 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C29%2C26%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D6.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold288 SAMTools SNP 474830 474830 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C24%2C10%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.038%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold288 SAMTools SNP 474857 474857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 474880 474880 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C24%2C102%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 475303 475303 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C91%2C197%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C0.019%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 475354 475354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C159%2C12%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 475680 475680 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 475842 475842 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C168%2C3%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-06%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 475849 475849 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C169%2C12%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00096%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 476669 476669 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C30%2C0:57 scaffold288 SAMTools SNP 481222 481222 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold288 SAMTools SNP 481236 481236 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold288 SAMTools SNP 481661 481661 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D48%3BFQ%3D44%3BPV4%3D0.47%2C0.00013%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C209:74 scaffold288 SAMTools SNP 481721 481721 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C1%3BMQ%3D48%3BFQ%3D28%3BPV4%3D0.13%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C222:58 scaffold288 SAMTools SNP 481749 481749 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C9%3BMQ%3D49%3BFQ%3D191%3BPV4%3D0.25%2C1%2C0.21%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C218:99 scaffold288 SAMTools SNP 481759 481759 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C9%3BMQ%3D48%3BFQ%3D163%3BPV4%3D1%2C1%2C0.23%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C190:99 scaffold288 SAMTools SNP 482147 482147 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold288 SAMTools SNP 482999 482999 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 484277 484277 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 485810 485810 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold288 SAMTools SNP 485817 485817 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 486751 486751 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 486962 486962 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold288 SAMTools SNP 486963 486963 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 497293 497293 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C87%2C0:99 scaffold288 SAMTools SNP 506835 506835 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 506878 506878 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C14%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 506913 506913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 506919 506919 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 506922 506922 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C30%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.32%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 507224 507224 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C14%2C17%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 507585 507585 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C71%2C17%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.041%2C4.2e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold288 SAMTools SNP 508191 508191 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 509926 509926 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C79%2C34%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 509968 509968 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C9%2C6%2C10%3BMQ%3D16%3BFQ%3D6.98%3BPV4%3D1%2C1%2C0.24%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C62:33 scaffold288 SAMTools SNP 510247 510247 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C32%2C3%2C7%3BMQ%3D43%3BFQ%3D73%3BPV4%3D0.19%2C0.3%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold288 SAMTools SNP 510268 510268 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C35%2C7%2C12%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 511185 511185 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold288 SAMTools SNP 511227 511227 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C78%2C58%2C44%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 511236 511236 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C66%2C30%2C76%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.0091%2C0.00047%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 511263 511263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C66%2C16%2C46%3BMQ%3D29%3BFQ%3D225%3BPV4%3D0.023%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 511479 511479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C54%2C11%2C32%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 511506 511506 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C0%2C33%3BMQ%3D47%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C254:99 scaffold288 SAMTools SNP 513578 513578 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C126%2C0:99 scaffold288 SAMTools SNP 513773 513773 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold288 SAMTools SNP 517398 517398 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C220:99 scaffold288 SAMTools SNP 517508 517508 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 518704 518704 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold288 SAMTools SNP 518794 518794 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D77%3BPV4%3D1%2C0.42%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C212:99 scaffold288 SAMTools SNP 518814 518814 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C31%2C0%2C9%3BMQ%3D49%3BFQ%3D42%3BPV4%3D0.0032%2C0.3%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold288 SAMTools SNP 519012 519012 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C46%2C0%2C9%3BMQ%3D49%3BFQ%3D45%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold288 SAMTools SNP 519827 519827 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C92%2C1%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 519844 519844 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C59%2C0%2C9%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.59%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold288 SAMTools SNP 519994 519994 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.048%2C1.2e-07%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold288 SAMTools SNP 520722 520722 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold288 SAMTools SNP 520753 520753 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold288 SAMTools SNP 521364 521364 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 521927 521927 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C12%2C16%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 522908 522908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 523399 523399 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C7%2C41%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold288 SAMTools SNP 523800 523800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 523837 523837 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C97%2C87%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C1%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 524139 524139 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C84%2C27%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.0039%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 524223 524223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C96%2C13%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 524694 524694 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C75%2C21%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 524999 524999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C51%2C34%3BMQ%3D50%3BFQ%3D-246%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C219%2C0:99 scaffold288 SAMTools SNP 525129 525129 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C57%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold288 SAMTools SNP 525152 525152 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C57%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold288 SAMTools SNP 526788 526788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold288 SAMTools SNP 526809 526809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold288 SAMTools SNP 533745 533745 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold288 SAMTools SNP 533797 533797 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C241:83 scaffold288 SAMTools SNP 534327 534327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold288 SAMTools SNP 535276 535276 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 535279 535279 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold288 SAMTools SNP 537927 537927 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold288 SAMTools SNP 537965 537965 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold288 SAMTools SNP 539249 539249 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 539260 539260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C36%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold288 SAMTools SNP 541061 541061 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold288 SAMTools SNP 544431 544431 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 544447 544447 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 544596 544596 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C1%2C19%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold288 SAMTools SNP 544628 544628 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 545024 545024 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C54%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold288 SAMTools SNP 545250 545250 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold288 SAMTools SNP 545315 545315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold288 SAMTools SNP 554574 554574 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold288 SAMTools SNP 556308 556308 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.27%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold288 SAMTools SNP 556389 556389 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold288 SAMTools SNP 556719 556719 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 556723 556723 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold288 SAMTools SNP 556738 556738 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.43%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold288 SAMTools SNP 557010 557010 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold288 SAMTools SNP 557031 557031 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold288 SAMTools SNP 557242 557242 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold288 SAMTools SNP 558282 558282 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold288 SAMTools SNP 563396 563396 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 567663 567663 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C94%2C1%3BMQ%3D50%3BFQ%3D-219%3BPV4%3D0.041%2C0.17%2C0.44%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C192%2C0:99 scaffold288 SAMTools SNP 568140 568140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C279%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.47%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 573027 573027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 573800 573800 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D864%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C399%2C465%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 574353 574353 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D686%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D329%2C213%2C81%2C63%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.34%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold288 SAMTools SNP 574395 574395 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D814%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C133%2C109%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.45%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 574945 574945 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C71%2C13%2C338%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 575170 575170 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C5%2C207%2C36%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.028%2C0.25%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 575227 575227 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C241%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 575632 575632 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C192%2C93%2C7%3BMQ%3D50%3BFQ%3D121%3BPV4%3D7e-20%2C4.8e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold288 SAMTools SNP 575671 575671 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D649%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C217%2C130%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D8.9e-27%2C1%2C1%2C1.8e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold288 SAMTools SNP 576672 576672 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold288 SAMTools SNP 578418 578418 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C57%2C0:99 scaffold288 SAMTools SNP 578431 578431 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1.2e-11%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C238:99 scaffold288 SAMTools SNP 580924 580924 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C15:18 scaffold288 SAMTools SNP 580945 580945 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold288 SAMTools SNP 581902 581902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold288 SAMTools SNP 581912 581912 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 584435 584435 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold288 SAMTools SNP 584679 584679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold288 SAMTools SNP 584703 584703 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold288 SAMTools SNP 585222 585222 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold288 SAMTools SNP 585251 585251 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold288 SAMTools SNP 586395 586395 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold288 SAMTools SNP 587848 587848 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold288 SAMTools SNP 588001 588001 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 588009 588009 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 588794 588794 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0153%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold288 SAMTools SNP 589801 589801 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C22%3BMQ%3D50%3BFQ%3D-121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C0:99 scaffold288 SAMTools SNP 590871 590871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C7%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold288 SAMTools SNP 590915 590915 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold288 SAMTools SNP 591298 591298 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold288 SAMTools SNP 592070 592070 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold288 SAMTools SNP 593681 593681 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold288 SAMTools SNP 593685 593685 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold288 SAMTools SNP 593711 593711 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold288 SAMTools SNP 593777 593777 12.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold288 SAMTools SNP 604276 604276 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold288 SAMTools SNP 605926 605926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold288 SAMTools SNP 605928 605928 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold288 SAMTools SNP 606273 606273 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold288 SAMTools SNP 606288 606288 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold288 SAMTools SNP 606530 606530 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 607473 607473 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C208%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold288 SAMTools SNP 607947 607947 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C70%2C0%2C18%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C3.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold288 SAMTools SNP 607978 607978 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.029%2C0.38%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold288 SAMTools SNP 607986 607986 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold288 SAMTools SNP 607987 607987 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold288 SAMTools SNP 608131 608131 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold288 SAMTools SNP 608132 608132 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C164:99 scaffold288 SAMTools SNP 608209 608209 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold288 SAMTools SNP 608217 608217 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 608705 608705 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C49%2C13%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C0.089%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 608745 608745 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C40%2C4%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 608906 608906 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold288 SAMTools SNP 608922 608922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold288 SAMTools SNP 612421 612421 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold288 SAMTools SNP 612956 612956 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.096%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C69:72 scaffold288 SAMTools SNP 613091 613091 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold288 SAMTools SNP 613155 613155 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold288 SAMTools SNP 616588 616588 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold288 SAMTools SNP 617353 617353 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C39%2C0:75 scaffold288 SAMTools SNP 617482 617482 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold288 SAMTools SNP 617598 617598 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0066%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold288 SAMTools SNP 618025 618025 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C27%2C0:51 scaffold288 SAMTools SNP 618075 618075 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold288 SAMTools SNP 618792 618792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.3e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 618828 618828 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C39%2C0:75 scaffold288 SAMTools SNP 619852 619852 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold288 SAMTools SNP 619930 619930 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold288 SAMTools SNP 619934 619934 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold288 SAMTools SNP 619945 619945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold288 SAMTools SNP 621162 621162 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 621967 621967 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold288 SAMTools SNP 622246 622246 63.8 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold288 SAMTools SNP 623112 623112 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold288 SAMTools SNP 623139 623139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C17%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold288 SAMTools SNP 624491 624491 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold288 SAMTools SNP 624653 624653 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold288 SAMTools SNP 625593 625593 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.5%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold288 SAMTools SNP 625915 625915 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold288 SAMTools SNP 626542 626542 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold288 SAMTools SNP 626554 626554 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 626590 626590 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold288 SAMTools SNP 626671 626671 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold288 SAMTools SNP 627191 627191 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 627194 627194 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C13:16 scaffold288 SAMTools SNP 627485 627485 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C176:99 scaffold288 SAMTools SNP 627657 627657 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold288 SAMTools SNP 628113 628113 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C240:99 scaffold288 SAMTools SNP 628305 628305 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 628326 628326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold288 SAMTools SNP 628720 628720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0065%2C1%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold288 SAMTools SNP 628750 628750 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.54%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold288 SAMTools SNP 628759 628759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold288 SAMTools SNP 629117 629117 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold288 SAMTools SNP 630210 630210 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C32:35 scaffold288 SAMTools SNP 630318 630318 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 630864 630864 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold288 SAMTools SNP 631345 631345 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold288 SAMTools SNP 631479 631479 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold288 SAMTools SNP 631951 631951 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C127:99 scaffold288 SAMTools SNP 631969 631969 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C150%2C111:75 scaffold288 SAMTools SNP 631991 631991 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.44%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold288 SAMTools SNP 633683 633683 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C127:51 scaffold288 SAMTools SNP 633773 633773 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C88:46 scaffold288 SAMTools SNP 633784 633784 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold288 SAMTools SNP 633799 633799 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold288 SAMTools SNP 634159 634159 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C0.34%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold288 SAMTools SNP 635450 635450 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.43%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C146:94 scaffold288 SAMTools SNP 635536 635536 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold288 SAMTools SNP 636776 636776 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.13%2C0.0028%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold288 SAMTools SNP 638443 638443 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold288 SAMTools SNP 638467 638467 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold288 SAMTools SNP 638806 638806 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold288 SAMTools SNP 638857 638857 153 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C0.43%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C236:99 scaffold288 SAMTools SNP 638869 638869 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold288 SAMTools SNP 638914 638914 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C15%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold288 SAMTools SNP 640139 640139 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold288 SAMTools SNP 640298 640298 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold288 SAMTools SNP 642120 642120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold288 SAMTools SNP 642494 642494 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold288 SAMTools SNP 642534 642534 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold288 SAMTools SNP 643151 643151 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C7%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold288 SAMTools SNP 643631 643631 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold288 SAMTools SNP 643760 643760 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold288 SAMTools SNP 644029 644029 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold290 SAMTools SNP 812 812 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 5144 5144 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D47%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C22:25 scaffold290 SAMTools SNP 5146 5146 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C10%3BMQ%3D44%3BFQ%3D-21%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C6:9 scaffold290 SAMTools SNP 11146 11146 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C16%2C0%2C28%3BMQ%3D40%3BFQ%3D-43%3BPV4%3D1%2C0.17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold290 SAMTools SNP 11171 11171 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold290 SAMTools SNP 11188 11188 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 22383 22383 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold290 SAMTools SNP 22592 22592 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 30507 30507 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.6%2C2.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold290 SAMTools SNP 31142 31142 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C30%2C0:57 scaffold290 SAMTools SNP 31179 31179 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold290 SAMTools SNP 31272 31272 9.49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold290 SAMTools SNP 31439 31439 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold290 SAMTools SNP 32950 32950 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold290 SAMTools SNP 33343 33343 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold290 SAMTools SNP 34490 34490 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 34544 34544 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 36343 36343 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 36727 36727 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.041%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C150:99 scaffold290 SAMTools SNP 36737 36737 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C221:99 scaffold290 SAMTools SNP 37373 37373 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold290 SAMTools SNP 37671 37671 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D80.8%3BPV4%3D1%2C0.039%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C122:99 scaffold290 SAMTools SNP 38203 38203 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.19%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold290 SAMTools SNP 38246 38246 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold290 SAMTools SNP 43177 43177 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold290 SAMTools SNP 45577 45577 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.6e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C154:50 scaffold290 SAMTools SNP 48244 48244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D208%2C75%2C202%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 49055 49055 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C79%3BMQ%3D10%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C253%2C0:99 scaffold290 SAMTools SNP 51475 51475 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C224:99 scaffold290 SAMTools SNP 53404 53404 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold290 SAMTools SNP 53408 53408 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C11%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.65%2C0.18%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold290 SAMTools SNP 55524 55524 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C12%2C58%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 55606 55606 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C36%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 57851 57851 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 59588 59588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C42%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C0.039%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 60580 60580 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold290 SAMTools SNP 60645 60645 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C7%2C37%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.039%2C0.055%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 60683 60683 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold290 SAMTools SNP 60748 60748 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.7e-06%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C119:58 scaffold290 SAMTools SNP 60786 60786 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold290 SAMTools SNP 66587 66587 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 69253 69253 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold290 SAMTools SNP 69255 69255 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 70395 70395 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold290 SAMTools SNP 71939 71939 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold290 SAMTools SNP 71942 71942 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold290 SAMTools SNP 72089 72089 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D47%3BFQ%3D46%3BPV4%3D0.37%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C73:76 scaffold290 SAMTools SNP 72702 72702 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C14%2C0%3BMQ%3D49%3BFQ%3D176%3BPV4%3D1%2C0.093%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold290 SAMTools SNP 73519 73519 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold290 SAMTools SNP 73754 73754 36.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold290 SAMTools SNP 74091 74091 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 74094 74094 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 74722 74722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold290 SAMTools SNP 74978 74978 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C143:85 scaffold290 SAMTools SNP 75041 75041 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C124:65 scaffold290 SAMTools SNP 75053 75053 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 75437 75437 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold290 SAMTools SNP 75956 75956 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold290 SAMTools SNP 76022 76022 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C182:99 scaffold290 SAMTools SNP 76025 76025 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C0.095%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C252:99 scaffold290 SAMTools SNP 76154 76154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold290 SAMTools SNP 78380 78380 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold290 SAMTools SNP 78830 78830 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold290 SAMTools SNP 79002 79002 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 79422 79422 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold290 SAMTools SNP 79434 79434 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 80063 80063 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold290 SAMTools SNP 80086 80086 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 80631 80631 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 80926 80926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold290 SAMTools SNP 81612 81612 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold290 SAMTools SNP 81627 81627 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold290 SAMTools SNP 82864 82864 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 84472 84472 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold290 SAMTools SNP 85763 85763 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D46%3BFQ%3D52%3BPV4%3D1%2C0.12%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C203:82 scaffold290 SAMTools SNP 94414 94414 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold290 SAMTools SNP 94425 94425 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.54%2C8.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C227:54 scaffold290 SAMTools SNP 97406 97406 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold290 SAMTools SNP 99396 99396 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C6.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold290 SAMTools SNP 104940 104940 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 115353 115353 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 115385 115385 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold290 SAMTools SNP 115928 115928 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 116189 116189 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 116257 116257 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold290 SAMTools SNP 130401 130401 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 148289 148289 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold290 SAMTools SNP 156808 156808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 156832 156832 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 157924 157924 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold290 SAMTools SNP 158308 158308 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.35%2C2.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold290 SAMTools SNP 158358 158358 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C33%3BMQ%3D50%3BFQ%3D-86%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C59%2C0:99 scaffold290 SAMTools SNP 161111 161111 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.44%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold290 SAMTools SNP 161120 161120 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold290 SAMTools SNP 165097 165097 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C0%3BMQ%3D48%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold290 SAMTools SNP 165989 165989 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold290 SAMTools SNP 166044 166044 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 166189 166189 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold290 SAMTools SNP 170575 170575 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C0%3BMQ%3D49%3BFQ%3D31%3BPV4%3D1%2C0.02%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold290 SAMTools SNP 170577 170577 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C14%2C4%3BMQ%3D49%3BFQ%3D-29%3BPV4%3D1%2C1%2C0.37%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold290 SAMTools SNP 171646 171646 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C20%2C32%3BMQ%3D37%3BFQ%3D176%3BPV4%3D0.2%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C203:99 scaffold290 SAMTools SNP 175018 175018 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold290 SAMTools SNP 260744 260744 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold290 SAMTools SNP 263149 263149 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold290 SAMTools SNP 263480 263480 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold290 SAMTools SNP 263496 263496 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold290 SAMTools SNP 264952 264952 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 271532 271532 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 275776 275776 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold290 SAMTools SNP 278287 278287 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold290 SAMTools SNP 282249 282249 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold290 SAMTools SNP 282258 282258 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold290 SAMTools SNP 282733 282733 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 283912 283912 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold290 SAMTools SNP 283921 283921 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 284012 284012 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold290 SAMTools SNP 289739 289739 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold290 SAMTools SNP 290203 290203 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold290 SAMTools SNP 290215 290215 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.18%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C127:50 scaffold290 SAMTools SNP 290503 290503 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold290 SAMTools SNP 290758 290758 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold290 SAMTools SNP 290971 290971 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold290 SAMTools SNP 291642 291642 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 298969 298969 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold290 SAMTools SNP 309618 309618 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold290 SAMTools SNP 324290 324290 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold290 SAMTools SNP 324653 324653 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.092%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold290 SAMTools SNP 324862 324862 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 343900 343900 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C234%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold290 SAMTools SNP 344718 344718 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D76.3%3BPV4%3D0.44%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C108:99 scaffold290 SAMTools SNP 345964 345964 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold290 SAMTools SNP 350692 350692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold290 SAMTools SNP 351100 351100 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C74%3BMQ%3D49%3BFQ%3D-77;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C205:64 scaffold290 SAMTools SNP 353826 353826 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold290 SAMTools SNP 358540 358540 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 358545 358545 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 359720 359720 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C60%3BMQ%3D43%3BFQ%3D198%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C225:99 scaffold290 SAMTools SNP 361463 361463 103 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D37%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C36:39 scaffold290 SAMTools SNP 364745 364745 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold290 SAMTools SNP 364799 364799 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold290 SAMTools SNP 364854 364854 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.011%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold290 SAMTools SNP 366326 366326 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 367157 367157 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold290 SAMTools SNP 373291 373291 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 373827 373827 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 374485 374485 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 379570 379570 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C110%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.48%2C1%2C1.2e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C51:54 scaffold290 SAMTools SNP 380452 380452 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold290 SAMTools SNP 381730 381730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold290 SAMTools SNP 381799 381799 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C53%2C39%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 381805 381805 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C53%2C43%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 382539 382539 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold290 SAMTools SNP 382575 382575 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C134:37 scaffold290 SAMTools SNP 382998 382998 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 383001 383001 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 383529 383529 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C52%2C41%3BMQ%3D50%3BFQ%3D-250%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold290 SAMTools SNP 383595 383595 99.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold290 SAMTools SNP 384192 384192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold290 SAMTools SNP 384204 384204 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C38%2C4%2C15%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.002%2C1.8e-21%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold290 SAMTools SNP 385412 385412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C249%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold290 SAMTools SNP 407921 407921 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 408892 408892 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 409341 409341 98.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C15%2C0:27 scaffold290 SAMTools SNP 409457 409457 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C158:99 scaffold290 SAMTools SNP 410635 410635 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold290 SAMTools SNP 410684 410684 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold290 SAMTools SNP 410722 410722 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C214:99 scaffold290 SAMTools SNP 413543 413543 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold290 SAMTools SNP 414174 414174 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C93:96 scaffold290 SAMTools SNP 414219 414219 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold290 SAMTools SNP 414730 414730 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.049%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold290 SAMTools SNP 414778 414778 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold290 SAMTools SNP 416248 416248 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C143:83 scaffold290 SAMTools SNP 416284 416284 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold290 SAMTools SNP 416350 416350 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 416371 416371 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 417247 417247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold290 SAMTools SNP 417838 417838 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 417956 417956 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C21:24 scaffold290 SAMTools SNP 417978 417978 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold290 SAMTools SNP 418636 418636 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold290 SAMTools SNP 418639 418639 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold290 SAMTools SNP 418642 418642 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold290 SAMTools SNP 418717 418717 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 420493 420493 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 421496 421496 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 421925 421925 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold290 SAMTools SNP 434482 434482 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold290 SAMTools SNP 434495 434495 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold290 SAMTools SNP 471273 471273 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 471828 471828 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold290 SAMTools SNP 472348 472348 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold290 SAMTools SNP 472371 472371 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 474269 474269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 474654 474654 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 474743 474743 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold290 SAMTools SNP 474797 474797 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold290 SAMTools SNP 476075 476075 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold290 SAMTools SNP 500572 500572 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold290 SAMTools SNP 511957 511957 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold290 SAMTools SNP 512251 512251 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold290 SAMTools SNP 512267 512267 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold290 SAMTools SNP 533331 533331 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold290 SAMTools SNP 533342 533342 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C35:38 scaffold290 SAMTools SNP 534788 534788 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold290 SAMTools SNP 534943 534943 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold290 SAMTools SNP 535440 535440 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold290 SAMTools SNP 535449 535449 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold290 SAMTools SNP 549539 549539 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold290 SAMTools SNP 550100 550100 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0035%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold290 SAMTools SNP 554502 554502 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C160:99 scaffold290 SAMTools SNP 556264 556264 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold292 SAMTools SNP 3064 3064 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold292 SAMTools SNP 3950 3950 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C78%2C11%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold292 SAMTools SNP 17779 17779 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C52%2C23%2C80%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.17%2C2.6e-171%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold292 SAMTools SNP 17903 17903 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C255%2C0:99 scaffold292 SAMTools SNP 18092 18092 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C255%2C0:99 scaffold292 SAMTools SNP 60007 60007 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold292 SAMTools SNP 60051 60051 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold292 SAMTools SNP 69687 69687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold292 SAMTools SNP 69715 69715 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold292 SAMTools SNP 70011 70011 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold292 SAMTools SNP 70337 70337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold292 SAMTools SNP 70636 70636 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C36%2C0:69 scaffold292 SAMTools SNP 70771 70771 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold292 SAMTools SNP 70855 70855 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold292 SAMTools SNP 70876 70876 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold292 SAMTools SNP 71482 71482 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold292 SAMTools SNP 71524 71524 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold292 SAMTools SNP 71551 71551 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold292 SAMTools SNP 71595 71595 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C205:57 scaffold292 SAMTools SNP 72457 72457 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C93:96 scaffold294 SAMTools SNP 2185 2185 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold294 SAMTools SNP 10988 10988 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold294 SAMTools SNP 12488 12488 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold294 SAMTools SNP 12528 12528 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold294 SAMTools SNP 13537 13537 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold294 SAMTools SNP 15108 15108 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold294 SAMTools SNP 15126 15126 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold294 SAMTools SNP 15376 15376 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold294 SAMTools SNP 15671 15671 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold294 SAMTools SNP 15744 15744 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 15758 15758 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold294 SAMTools SNP 19310 19310 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 19427 19427 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold294 SAMTools SNP 19856 19856 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold294 SAMTools SNP 19872 19872 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.3%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold294 SAMTools SNP 20039 20039 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.57%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold294 SAMTools SNP 29173 29173 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold294 SAMTools SNP 30167 30167 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C40:43 scaffold294 SAMTools SNP 30351 30351 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold294 SAMTools SNP 30668 30668 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold294 SAMTools SNP 54130 54130 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold294 SAMTools SNP 59218 59218 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C80:73 scaffold294 SAMTools SNP 59239 59239 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold294 SAMTools SNP 59251 59251 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold294 SAMTools SNP 59939 59939 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold294 SAMTools SNP 62987 62987 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C16%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold294 SAMTools SNP 75955 75955 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold294 SAMTools SNP 92223 92223 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold294 SAMTools SNP 92406 92406 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C7.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C195:66 scaffold294 SAMTools SNP 126413 126413 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold294 SAMTools SNP 127499 127499 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold294 SAMTools SNP 127546 127546 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold294 SAMTools SNP 128136 128136 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold294 SAMTools SNP 129245 129245 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 131773 131773 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold294 SAMTools SNP 134528 134528 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold294 SAMTools SNP 134561 134561 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold294 SAMTools SNP 151305 151305 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 152520 152520 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold294 SAMTools SNP 161581 161581 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 162391 162391 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold294 SAMTools SNP 187291 187291 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.47%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C206:87 scaffold294 SAMTools SNP 187746 187746 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold294 SAMTools SNP 188279 188279 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.26%2C7.7e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold294 SAMTools SNP 209995 209995 23.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold294 SAMTools SNP 246162 246162 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold294 SAMTools SNP 247104 247104 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold294 SAMTools SNP 247620 247620 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold294 SAMTools SNP 247716 247716 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold294 SAMTools SNP 247721 247721 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold294 SAMTools SNP 249013 249013 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold294 SAMTools SNP 249568 249568 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold294 SAMTools SNP 249619 249619 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 250170 250170 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold294 SAMTools SNP 250229 250229 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold294 SAMTools SNP 251281 251281 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold294 SAMTools SNP 251311 251311 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold294 SAMTools SNP 252491 252491 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.00019%2C0.24%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold294 SAMTools SNP 252599 252599 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold294 SAMTools SNP 253097 253097 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.09%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold294 SAMTools SNP 253104 253104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold294 SAMTools SNP 253230 253230 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.00013%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold294 SAMTools SNP 253236 253236 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D5.4e-05%2C0.2%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold294 SAMTools SNP 253820 253820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C28%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold294 SAMTools SNP 254694 254694 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C7%2C8%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.34%2C3.5e-18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold294 SAMTools SNP 254699 254699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold294 SAMTools SNP 254745 254745 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C3%2C170%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C6.4e-314%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold294 SAMTools SNP 254820 254820 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold294 SAMTools SNP 256219 256219 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C244:99 scaffold294 SAMTools SNP 256264 256264 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold294 SAMTools SNP 257269 257269 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C14%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.0011%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold294 SAMTools SNP 258350 258350 36.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold294 SAMTools SNP 258964 258964 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold294 SAMTools SNP 258981 258981 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 259337 259337 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold294 SAMTools SNP 259355 259355 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 11731 11731 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 22989 22989 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold296 SAMTools SNP 23982 23982 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold296 SAMTools SNP 23992 23992 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold296 SAMTools SNP 27937 27937 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C9.9e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C136:42 scaffold296 SAMTools SNP 28028 28028 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C7.3e-08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C156:37 scaffold296 SAMTools SNP 44784 44784 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold296 SAMTools SNP 45448 45448 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.24%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold296 SAMTools SNP 45490 45490 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.045%2C0.32%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold296 SAMTools SNP 45675 45675 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold296 SAMTools SNP 46131 46131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold296 SAMTools SNP 46166 46166 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold296 SAMTools SNP 46804 46804 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold296 SAMTools SNP 70457 70457 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold296 SAMTools SNP 70511 70511 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.057%2C0.039%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold296 SAMTools SNP 70694 70694 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold296 SAMTools SNP 71502 71502 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold296 SAMTools SNP 73450 73450 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold296 SAMTools SNP 74016 74016 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold296 SAMTools SNP 74115 74115 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold296 SAMTools SNP 74429 74429 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.31%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold296 SAMTools SNP 74831 74831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C64%2C1%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 74858 74858 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C1%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 75943 75943 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold296 SAMTools SNP 76338 76338 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.32%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 76759 76759 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C38%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 84414 84414 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold296 SAMTools SNP 84479 84479 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C174:99 scaffold296 SAMTools SNP 84928 84928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold296 SAMTools SNP 85406 85406 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold296 SAMTools SNP 85456 85456 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C132:52 scaffold296 SAMTools SNP 85531 85531 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold296 SAMTools SNP 85828 85828 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold296 SAMTools SNP 86914 86914 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.3%2C5.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C190:28 scaffold296 SAMTools SNP 87376 87376 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold296 SAMTools SNP 87388 87388 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold296 SAMTools SNP 87858 87858 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.58%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C249:99 scaffold296 SAMTools SNP 87895 87895 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.57%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold296 SAMTools SNP 88240 88240 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.037%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C102:99 scaffold296 SAMTools SNP 88291 88291 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C153:67 scaffold296 SAMTools SNP 136001 136001 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 136778 136778 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.55%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C93:61 scaffold296 SAMTools SNP 137143 137143 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 140604 140604 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C8%2C30%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.2%2C6.7e-20%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold296 SAMTools SNP 140625 140625 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold296 SAMTools SNP 141453 141453 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C27%2C12%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D0.54%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C47%2C0:91 scaffold296 SAMTools SNP 141492 141492 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C11%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.17%2C2.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold296 SAMTools SNP 141570 141570 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C4%2C11%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.045%2C1.6e-29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold296 SAMTools SNP 141792 141792 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C26%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.72%2C5.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold296 SAMTools SNP 141831 141831 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C27%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C232%2C0:99 scaffold296 SAMTools SNP 141916 141916 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C25%2C77%2C27%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.41%2C3.4e-102%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold296 SAMTools SNP 142332 142332 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold296 SAMTools SNP 142566 142566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C31%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold296 SAMTools SNP 142733 142733 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 142740 142740 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C1%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold296 SAMTools SNP 143273 143273 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.017%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold296 SAMTools SNP 143423 143423 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold296 SAMTools SNP 177940 177940 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold296 SAMTools SNP 178277 178277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C16%2C55%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 187894 187894 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C3%2C68%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.68%2C2.1e-55%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold296 SAMTools SNP 187929 187929 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C13%2C79%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1.7e-05%2C2.2e-121%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold296 SAMTools SNP 188087 188087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C219%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold296 SAMTools SNP 188240 188240 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C136%2C29%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 188291 188291 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0394%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold296 SAMTools SNP 188549 188549 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C95%2C53%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold296 SAMTools SNP 189202 189202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C210%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold296 SAMTools SNP 195014 195014 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold296 SAMTools SNP 207585 207585 46.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold296 SAMTools SNP 207699 207699 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold296 SAMTools SNP 232775 232775 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 233737 233737 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold296 SAMTools SNP 234525 234525 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold296 SAMTools SNP 234571 234571 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold296 SAMTools SNP 236273 236273 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold296 SAMTools SNP 236332 236332 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 236390 236390 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold296 SAMTools SNP 236538 236538 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold296 SAMTools SNP 236733 236733 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold296 SAMTools SNP 236768 236768 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold296 SAMTools SNP 236800 236800 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 236853 236853 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold296 SAMTools SNP 242490 242490 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 243145 243145 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold296 SAMTools SNP 243229 243229 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold296 SAMTools SNP 257112 257112 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold296 SAMTools SNP 261086 261086 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C42%2C0:50 scaffold296 SAMTools SNP 262539 262539 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C0.36%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold296 SAMTools SNP 263339 263339 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold296 SAMTools SNP 263353 263353 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D43%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C156:72 scaffold296 SAMTools SNP 263378 263378 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D44%3BFQ%3D39%3BPV4%3D0.5%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C182:69 scaffold296 SAMTools SNP 263964 263964 96.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold296 SAMTools SNP 264138 264138 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold296 SAMTools SNP 264709 264709 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold296 SAMTools SNP 264832 264832 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.079%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C38:41 scaffold296 SAMTools SNP 267153 267153 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold296 SAMTools SNP 267455 267455 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold296 SAMTools SNP 267458 267458 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold296 SAMTools SNP 271847 271847 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold296 SAMTools SNP 272148 272148 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C24%2C0:45 scaffold296 SAMTools SNP 272672 272672 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D39%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold296 SAMTools SNP 272697 272697 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold296 SAMTools SNP 273737 273737 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold296 SAMTools SNP 273785 273785 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 274456 274456 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 274595 274595 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 274868 274868 57.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold296 SAMTools SNP 286270 286270 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold296 SAMTools SNP 286668 286668 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 287138 287138 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold296 SAMTools SNP 287168 287168 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 288753 288753 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.43%2C2.2e-06%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C134:58 scaffold296 SAMTools SNP 289054 289054 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold296 SAMTools SNP 289604 289604 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold296 SAMTools SNP 289621 289621 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold296 SAMTools SNP 289921 289921 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold296 SAMTools SNP 290237 290237 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold298 SAMTools SNP 10894 10894 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 47863 47863 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C45%2C0:87 scaffold298 SAMTools SNP 48273 48273 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 50465 50465 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold298 SAMTools SNP 52521 52521 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 55437 55437 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold298 SAMTools SNP 55471 55471 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold298 SAMTools SNP 58970 58970 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold298 SAMTools SNP 59099 59099 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold298 SAMTools SNP 59270 59270 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold298 SAMTools SNP 60473 60473 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 65054 65054 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold298 SAMTools SNP 65082 65082 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold298 SAMTools SNP 65418 65418 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C85:33 scaffold298 SAMTools SNP 65432 65432 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold298 SAMTools SNP 65456 65456 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C88:33 scaffold298 SAMTools SNP 66047 66047 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.23%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold298 SAMTools SNP 66095 66095 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold298 SAMTools SNP 68471 68471 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.049%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold298 SAMTools SNP 68779 68779 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold298 SAMTools SNP 68823 68823 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 70784 70784 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 72352 72352 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold298 SAMTools SNP 72353 72353 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold298 SAMTools SNP 74726 74726 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 74732 74732 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 75445 75445 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C24%2C0:45 scaffold298 SAMTools SNP 81997 81997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 82216 82216 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 86225 86225 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 128869 128869 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.4e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C217:43 scaffold298 SAMTools SNP 128944 128944 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.27%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C114:58 scaffold298 SAMTools SNP 129283 129283 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C8.1e-20%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C147:44 scaffold298 SAMTools SNP 147116 147116 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold298 SAMTools SNP 147364 147364 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 147379 147379 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 150344 150344 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold298 SAMTools SNP 151604 151604 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 153114 153114 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.29%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C238:99 scaffold298 SAMTools SNP 154363 154363 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold298 SAMTools SNP 154453 154453 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.041%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 154927 154927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold298 SAMTools SNP 154939 154939 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C1%2C22%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.38%2C2.7e-17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold298 SAMTools SNP 154948 154948 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.049%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold298 SAMTools SNP 157027 157027 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold298 SAMTools SNP 158408 158408 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold298 SAMTools SNP 158419 158419 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold298 SAMTools SNP 284218 284218 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold298 SAMTools SNP 298289 298289 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold298 SAMTools SNP 298291 298291 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold298 SAMTools SNP 329777 329777 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold298 SAMTools SNP 332088 332088 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold298 SAMTools SNP 333511 333511 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold298 SAMTools SNP 336226 336226 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold298 SAMTools SNP 342023 342023 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold298 SAMTools SNP 342044 342044 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold298 SAMTools SNP 342068 342068 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold298 SAMTools SNP 342293 342293 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 342619 342619 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C27%2C0:51 scaffold298 SAMTools SNP 342708 342708 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00026%2C2.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C105:49 scaffold298 SAMTools SNP 342799 342799 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C33%2C0:63 scaffold298 SAMTools SNP 342928 342928 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.7e-12%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C237:85 scaffold298 SAMTools SNP 343012 343012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 343418 343418 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold298 SAMTools SNP 343454 343454 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.11%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C184:60 scaffold298 SAMTools SNP 343559 343559 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold298 SAMTools SNP 344263 344263 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.16%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C158:68 scaffold298 SAMTools SNP 344302 344302 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold298 SAMTools SNP 344320 344320 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold298 SAMTools SNP 344549 344549 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.035%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C241:99 scaffold298 SAMTools SNP 344953 344953 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold298 SAMTools SNP 346354 346354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold298 SAMTools SNP 346607 346607 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold298 SAMTools SNP 346643 346643 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C22%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold298 SAMTools SNP 347825 347825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold298 SAMTools SNP 349807 349807 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.6%2C0.2%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold298 SAMTools SNP 349831 349831 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.49%2C8.6e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold298 SAMTools SNP 349861 349861 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 349879 349879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 350158 350158 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold298 SAMTools SNP 350203 350203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold298 SAMTools SNP 350212 350212 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold298 SAMTools SNP 350658 350658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C9%3BMQ%3D32%3BFQ%3D-128%3BPV4%3D1%2C0.36%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold298 SAMTools SNP 355754 355754 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C9%2C76%3BMQ%3D19%3BFQ%3D-163%3BPV4%3D0.11%2C0.086%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C136%2C0:99 scaffold298 SAMTools SNP 355790 355790 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C6%2C67%3BMQ%3D21%3BFQ%3D-91%3BPV4%3D0.00016%2C1%2C6.5e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C64%2C0:99 scaffold298 SAMTools SNP 355835 355835 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 358399 358399 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C41%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 360506 360506 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.58%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold298 SAMTools SNP 364334 364334 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C75%2C0:99 scaffold298 SAMTools SNP 365860 365860 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C76%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.69%2C3.4e-43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C171:99 scaffold298 SAMTools SNP 365944 365944 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold298 SAMTools SNP 365980 365980 9.31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold298 SAMTools SNP 368573 368573 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold298 SAMTools SNP 368582 368582 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold298 SAMTools SNP 368585 368585 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold298 SAMTools SNP 368657 368657 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.089%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C243:99 scaffold298 SAMTools SNP 368681 368681 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 368708 368708 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold298 SAMTools SNP 368727 368727 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.044%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold298 SAMTools SNP 370563 370563 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold298 SAMTools SNP 373125 373125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C50%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold298 SAMTools SNP 373161 373161 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C40%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C4.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C123:99 scaffold298 SAMTools SNP 373233 373233 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold298 SAMTools SNP 373239 373239 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold298 SAMTools SNP 373260 373260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C101%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0093%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 375131 375131 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold298 SAMTools SNP 379362 379362 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold298 SAMTools SNP 379918 379918 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold298 SAMTools SNP 380027 380027 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C39%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0077%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold298 SAMTools SNP 380029 380029 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C39%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0077%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold298 SAMTools SNP 380378 380378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold298 SAMTools SNP 380392 380392 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold298 SAMTools SNP 380432 380432 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C50%2C0%2C12%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.11%2C1%2C1%2C2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold298 SAMTools SNP 380434 380434 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C50%2C0%2C13%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.062%2C1%2C1%2C4.2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold298 SAMTools SNP 380486 380486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 381502 381502 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C53:56 scaffold298 SAMTools SNP 381771 381771 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C2.7e-06%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold298 SAMTools SNP 381801 381801 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C88%3BMQ%3D50%3BFQ%3D72%3BPV4%3D2.3e-13%2C2.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold298 SAMTools SNP 381891 381891 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold298 SAMTools SNP 382089 382089 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C101%2C0%2C55%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0029%2C6.2e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold298 SAMTools SNP 382608 382608 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.23%2C0.003%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold298 SAMTools SNP 384890 384890 121 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 384933 384933 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C253:99 scaffold298 SAMTools SNP 385153 385153 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C16%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 385174 385174 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C46%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.49%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 386157 386157 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.23%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C226:99 scaffold298 SAMTools SNP 394577 394577 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold298 SAMTools SNP 394893 394893 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold298 SAMTools SNP 436710 436710 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 444751 444751 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 445725 445725 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 447759 447759 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 447813 447813 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold298 SAMTools SNP 448121 448121 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 448155 448155 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold298 SAMTools SNP 448157 448157 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold298 SAMTools SNP 448327 448327 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold298 SAMTools SNP 448501 448501 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold298 SAMTools SNP 459614 459614 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.013%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold298 SAMTools SNP 459639 459639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7989%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3210%2C1241%2C2589%2C932%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C9.7e-249%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 460225 460225 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C108:99 scaffold298 SAMTools SNP 460299 460299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2695%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D942%2C374%2C1077%2C255%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-08%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 461084 461084 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C288%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold298 SAMTools SNP 461088 461088 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C225%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold298 SAMTools SNP 469824 469824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8033%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4329%2C0%2C3699%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 470007 470007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7918%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7784%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold298 SAMTools SNP 470670 470670 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold298 SAMTools SNP 470672 470672 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold298 SAMTools SNP 470677 470677 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold298 SAMTools SNP 470752 470752 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 471251 471251 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C5.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C217:78 scaffold298 SAMTools SNP 472197 472197 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold298 SAMTools SNP 473042 473042 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1419%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D672%2C55%2C600%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 474562 474562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1210%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C279%2C266%2C269%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 475794 475794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C361%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold298 SAMTools SNP 475818 475818 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C242%2C22%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.084%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 476813 476813 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C3%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold298 SAMTools SNP 536550 536550 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold298 SAMTools SNP 539222 539222 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold298 SAMTools SNP 539247 539247 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold298 SAMTools SNP 539994 539994 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold298 SAMTools SNP 543238 543238 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold298 SAMTools SNP 543742 543742 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold298 SAMTools SNP 543772 543772 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.11%2C0.47%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C180:99 scaffold298 SAMTools SNP 543787 543787 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold298 SAMTools SNP 545006 545006 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold298 SAMTools SNP 545021 545021 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold298 SAMTools SNP 545120 545120 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold298 SAMTools SNP 545132 545132 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.25%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C37:40 scaffold298 SAMTools SNP 545420 545420 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold298 SAMTools SNP 545427 545427 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 548031 548031 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold298 SAMTools SNP 548166 548166 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 548206 548206 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold298 SAMTools SNP 548793 548793 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.56%2C0.12%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C238:99 scaffold298 SAMTools SNP 549356 549356 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold298 SAMTools SNP 549399 549399 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold298 SAMTools SNP 550055 550055 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C20%2C10%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.061%2C3.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold298 SAMTools SNP 550635 550635 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold298 SAMTools SNP 552005 552005 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold298 SAMTools SNP 552553 552553 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold298 SAMTools SNP 553770 553770 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C57%2C0:99 scaffold298 SAMTools SNP 553944 553944 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold298 SAMTools SNP 553962 553962 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold298 SAMTools SNP 554007 554007 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold298 SAMTools SNP 555783 555783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold298 SAMTools SNP 555831 555831 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 555897 555897 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold298 SAMTools SNP 555960 555960 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold298 SAMTools SNP 555984 555984 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold298 SAMTools SNP 556007 556007 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold298 SAMTools SNP 556032 556032 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold298 SAMTools SNP 558035 558035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold298 SAMTools SNP 561851 561851 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 561875 561875 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold298 SAMTools SNP 561893 561893 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold298 SAMTools SNP 562569 562569 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D27%3BFQ%3D9.05%3BPV4%3D0.43%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C39:38 scaffold298 SAMTools SNP 563240 563240 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold299 SAMTools SNP 17455 17455 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold299 SAMTools SNP 18731 18731 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1.7e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C187:36 scaffold299 SAMTools SNP 18862 18862 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C11%2C109%2C9%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.49%2C1.9e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold299 SAMTools SNP 19401 19401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C111%2C2%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold299 SAMTools SNP 19410 19410 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C93%2C2%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold299 SAMTools SNP 19832 19832 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold299 SAMTools SNP 20934 20934 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.13%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold299 SAMTools SNP 21096 21096 157 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C47%2C29%2C180%2C0%2C177:33 scaffold299 SAMTools SNP 22969 22969 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold299 SAMTools SNP 29402 29402 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold299 SAMTools SNP 29526 29526 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold299 SAMTools SNP 65368 65368 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold299 SAMTools SNP 66048 66048 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold299 SAMTools SNP 66059 66059 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold299 SAMTools SNP 66588 66588 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold299 SAMTools SNP 68325 68325 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.047%2C0.093%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold3 SAMTools SNP 47919 47919 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C62%2C1%2C32%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.17%2C1.3e-05%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold3 SAMTools SNP 49068 49068 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold3 SAMTools SNP 51563 51563 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.27%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold3 SAMTools SNP 51577 51577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold3 SAMTools SNP 52156 52156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold3 SAMTools SNP 52199 52199 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.43%2C4.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold3 SAMTools SNP 52262 52262 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.014%2C1.1e-06%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C224:99 scaffold3 SAMTools SNP 72041 72041 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C72%2C0:99 scaffold3 SAMTools SNP 72544 72544 174 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C35%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C232%2C0%2C203%2C208%2C200:99 scaffold3 SAMTools SNP 74187 74187 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C33%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold3 SAMTools SNP 74787 74787 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C8%2C57%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 76218 76218 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C7.3e-24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 88450 88450 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 88718 88718 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.23%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold3 SAMTools SNP 89678 89678 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 90344 90344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold3 SAMTools SNP 91107 91107 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold3 SAMTools SNP 92383 92383 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C247:99 scaffold3 SAMTools SNP 95712 95712 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.45%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold3 SAMTools SNP 97621 97621 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold3 SAMTools SNP 98288 98288 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold3 SAMTools SNP 98502 98502 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.51%2C0.079%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold3 SAMTools SNP 99067 99067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C44%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 103959 103959 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C6.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold3 SAMTools SNP 104574 104574 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.57%2C7.8e-07%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold3 SAMTools SNP 104786 104786 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold3 SAMTools SNP 104789 104789 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold3 SAMTools SNP 104863 104863 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.52%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold3 SAMTools SNP 104864 104864 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.3%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold3 SAMTools SNP 105258 105258 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold3 SAMTools SNP 106491 106491 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C24%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C203:99 scaffold3 SAMTools SNP 113043 113043 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C54%2C0:99 scaffold3 SAMTools SNP 113336 113336 30.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold3 SAMTools SNP 113437 113437 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold3 SAMTools SNP 113457 113457 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold3 SAMTools SNP 113614 113614 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.18%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold3 SAMTools SNP 114084 114084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 114438 114438 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold3 SAMTools SNP 114450 114450 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C0.1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C146:99 scaffold3 SAMTools SNP 114487 114487 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.28%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold3 SAMTools SNP 114490 114490 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.28%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold3 SAMTools SNP 114611 114611 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 114647 114647 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.041%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 114749 114749 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C14%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.011%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold3 SAMTools SNP 114897 114897 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 114912 114912 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 115058 115058 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.15%2C0.0038%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold3 SAMTools SNP 115678 115678 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C7:10 scaffold3 SAMTools SNP 115703 115703 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold3 SAMTools SNP 118082 118082 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C81:84 scaffold3 SAMTools SNP 118118 118118 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 118208 118208 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold3 SAMTools SNP 118211 118211 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold3 SAMTools SNP 118224 118224 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C247:99 scaffold3 SAMTools SNP 119736 119736 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C2%2C10%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.035%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold3 SAMTools SNP 119920 119920 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C75%2C0:99 scaffold3 SAMTools SNP 120161 120161 31.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1.7e-16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C5:8 scaffold3 SAMTools SNP 120208 120208 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.19%2C6.2e-18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C154:84 scaffold3 SAMTools SNP 128255 128255 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold3 SAMTools SNP 128508 128508 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C32%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold3 SAMTools SNP 128795 128795 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold3 SAMTools SNP 130944 130944 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold3 SAMTools SNP 132478 132478 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold3 SAMTools SNP 133380 133380 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C6%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C9.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C168:81 scaffold3 SAMTools SNP 133481 133481 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.64%2C2.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C237:99 scaffold3 SAMTools SNP 134639 134639 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold3 SAMTools SNP 135222 135222 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold3 SAMTools SNP 135511 135511 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold3 SAMTools SNP 142812 142812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C193%2C10%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 146303 146303 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C145:34 scaffold3 SAMTools SNP 146507 146507 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D46%3BFQ%3D49%3BPV4%3D0.43%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C109:79 scaffold3 SAMTools SNP 169129 169129 13.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold3 SAMTools SNP 169592 169592 51.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold3 SAMTools SNP 173264 173264 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C235:69 scaffold3 SAMTools SNP 173272 173272 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold3 SAMTools SNP 173371 173371 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold3 SAMTools SNP 174173 174173 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 174218 174218 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 178073 178073 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold3 SAMTools SNP 178498 178498 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.042%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C146:36 scaffold3 SAMTools SNP 200659 200659 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold3 SAMTools SNP 200660 200660 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold3 SAMTools SNP 200661 200661 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold3 SAMTools SNP 200687 200687 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold3 SAMTools SNP 200690 200690 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold3 SAMTools SNP 206747 206747 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 219389 219389 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C36%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold3 SAMTools SNP 219733 219733 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C11%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00079%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 220037 220037 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C34%2C23%2C14%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.054%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold3 SAMTools SNP 220267 220267 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C96%2C0:99 scaffold3 SAMTools SNP 220945 220945 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C119%2C27%2C50%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.12%2C7.2e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold3 SAMTools SNP 221392 221392 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C8%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.46%2C3.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold3 SAMTools SNP 221561 221561 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D28%2C43%2C0%2C41%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D4.3e-07%2C2.1e-32%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold3 SAMTools SNP 224592 224592 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold3 SAMTools SNP 225019 225019 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C16%2C22%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold3 SAMTools SNP 225031 225031 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C20%2C22%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.02%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold3 SAMTools SNP 225392 225392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C89%2C11%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1.2e-09%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 225416 225416 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C97%2C2%2C38%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold3 SAMTools SNP 225815 225815 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold3 SAMTools SNP 225878 225878 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold3 SAMTools SNP 225898 225898 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C0.14%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold3 SAMTools SNP 229545 229545 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C10%2C45%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 229556 229556 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C18%2C47%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 234641 234641 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C37%2C2%2C31%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.3e-08%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold3 SAMTools SNP 234965 234965 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D423%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C180%2C18%2C180%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.86%2C1.5e-303%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold3 SAMTools SNP 235387 235387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C44%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.5e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 235869 235869 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C75%2C0:99 scaffold3 SAMTools SNP 237791 237791 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold3 SAMTools SNP 238738 238738 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold3 SAMTools SNP 238795 238795 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold3 SAMTools SNP 240298 240298 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 240299 240299 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 245250 245250 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold3 SAMTools SNP 245674 245674 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C54%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold3 SAMTools SNP 246051 246051 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 246871 246871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold3 SAMTools SNP 247032 247032 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold3 SAMTools SNP 247036 247036 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold3 SAMTools SNP 247512 247512 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold3 SAMTools SNP 247560 247560 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold3 SAMTools SNP 247846 247846 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 249652 249652 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 249664 249664 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 249841 249841 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold3 SAMTools SNP 250180 250180 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.24%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold3 SAMTools SNP 250214 250214 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold3 SAMTools SNP 250228 250228 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold3 SAMTools SNP 251581 251581 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold3 SAMTools SNP 251906 251906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold3 SAMTools SNP 253211 253211 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C17:20 scaffold3 SAMTools SNP 253514 253514 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.0079%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold3 SAMTools SNP 253864 253864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold3 SAMTools SNP 253900 253900 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold3 SAMTools SNP 254260 254260 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold3 SAMTools SNP 254458 254458 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold3 SAMTools SNP 254807 254807 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold3 SAMTools SNP 256060 256060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold3 SAMTools SNP 257147 257147 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.54%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold3 SAMTools SNP 257384 257384 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C140:99 scaffold3 SAMTools SNP 258339 258339 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold3 SAMTools SNP 258469 258469 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.081%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold3 SAMTools SNP 258520 258520 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C104:53 scaffold3 SAMTools SNP 258564 258564 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D5.38%3BPV4%3D1%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C35:32 scaffold3 SAMTools SNP 261613 261613 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold3 SAMTools SNP 262888 262888 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 263427 263427 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 263697 263697 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 288648 288648 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold3 SAMTools SNP 288734 288734 10.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold3 SAMTools SNP 289121 289121 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold3 SAMTools SNP 289399 289399 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold3 SAMTools SNP 290365 290365 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold3 SAMTools SNP 290405 290405 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold3 SAMTools SNP 292569 292569 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold3 SAMTools SNP 292583 292583 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold3 SAMTools SNP 293000 293000 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold3 SAMTools SNP 293021 293021 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold3 SAMTools SNP 293063 293063 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 325724 325724 33.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold3 SAMTools SNP 325796 325796 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold3 SAMTools SNP 325919 325919 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold3 SAMTools SNP 326332 326332 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold3 SAMTools SNP 329358 329358 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C21%2C0:39 scaffold3 SAMTools SNP 331303 331303 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 331937 331937 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold3 SAMTools SNP 332853 332853 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold3 SAMTools SNP 333706 333706 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold3 SAMTools SNP 343418 343418 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold3 SAMTools SNP 408731 408731 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold3 SAMTools SNP 408738 408738 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.22%2C0.27%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C74:77 scaffold3 SAMTools SNP 414967 414967 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold3 SAMTools SNP 414969 414969 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold3 SAMTools SNP 427411 427411 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold3 SAMTools SNP 434610 434610 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C202%2C0:99 scaffold3 SAMTools SNP 434714 434714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 434736 434736 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C57%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 434749 434749 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C55%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 448634 448634 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C92%2C18%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1.6e-09%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold3 SAMTools SNP 471227 471227 44.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold3 SAMTools SNP 471258 471258 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold3 SAMTools SNP 471281 471281 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.6%3BPV4%3D1%2C0.31%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C77:80 scaffold3 SAMTools SNP 474147 474147 54.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold3 SAMTools SNP 481250 481250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold3 SAMTools SNP 481271 481271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold3 SAMTools SNP 485080 485080 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D5.33%3BPV4%3D1%2C7.1e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C32:34 scaffold3 SAMTools SNP 505477 505477 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold3 SAMTools SNP 506386 506386 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C2%2C42%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C8.3e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold3 SAMTools SNP 554922 554922 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold3 SAMTools SNP 555359 555359 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold3 SAMTools SNP 557633 557633 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold3 SAMTools SNP 557640 557640 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold3 SAMTools SNP 676330 676330 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 699213 699213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 700077 700077 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C5.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold3 SAMTools SNP 700152 700152 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold3 SAMTools SNP 700203 700203 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C197:99 scaffold3 SAMTools SNP 701017 701017 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.41%2C0.00088%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C250:99 scaffold3 SAMTools SNP 701270 701270 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 701456 701456 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold3 SAMTools SNP 701465 701465 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold3 SAMTools SNP 702319 702319 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold3 SAMTools SNP 702847 702847 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.54%2C0.1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold3 SAMTools SNP 702944 702944 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D43%3BFQ%3D123%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C150:99 scaffold3 SAMTools SNP 703327 703327 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C3%3BMQ%3D41%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C150:99 scaffold3 SAMTools SNP 707220 707220 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold3 SAMTools SNP 707266 707266 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D40%3BFQ%3D38%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C157:68 scaffold3 SAMTools SNP 707455 707455 139 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D41%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C50%2C29%2C166%2C0%2C160:39 scaffold3 SAMTools SNP 707500 707500 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.16%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold3 SAMTools SNP 707519 707519 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C18%2C0:33 scaffold3 SAMTools SNP 708759 708759 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold3 SAMTools SNP 708774 708774 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold3 SAMTools SNP 709008 709008 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.4%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C124:76 scaffold3 SAMTools SNP 709235 709235 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold3 SAMTools SNP 709250 709250 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold3 SAMTools SNP 709370 709370 73.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold3 SAMTools SNP 709388 709388 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 709406 709406 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.018%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold3 SAMTools SNP 709959 709959 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 709983 709983 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 710124 710124 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold3 SAMTools SNP 710440 710440 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold3 SAMTools SNP 710641 710641 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 710917 710917 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 710980 710980 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold3 SAMTools SNP 711642 711642 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold3 SAMTools SNP 711645 711645 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold3 SAMTools SNP 711902 711902 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold3 SAMTools SNP 711909 711909 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold3 SAMTools SNP 711992 711992 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0013%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold3 SAMTools SNP 712004 712004 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 712565 712565 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold3 SAMTools SNP 712642 712642 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C82:53 scaffold3 SAMTools SNP 712711 712711 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C201:99 scaffold3 SAMTools SNP 713149 713149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold3 SAMTools SNP 713742 713742 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold3 SAMTools SNP 713764 713764 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold3 SAMTools SNP 713779 713779 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold3 SAMTools SNP 714394 714394 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.1%2C0.00015%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold3 SAMTools SNP 714420 714420 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold3 SAMTools SNP 714708 714708 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold3 SAMTools SNP 714799 714799 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold3 SAMTools SNP 715247 715247 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold3 SAMTools SNP 715301 715301 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold3 SAMTools SNP 715387 715387 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold3 SAMTools SNP 715740 715740 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold3 SAMTools SNP 715782 715782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold3 SAMTools SNP 716410 716410 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold3 SAMTools SNP 716452 716452 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold3 SAMTools SNP 717291 717291 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.026%2C0.00043%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold3 SAMTools SNP 717320 717320 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0052%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C173:57 scaffold3 SAMTools SNP 717449 717449 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold3 SAMTools SNP 717904 717904 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C23%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.32%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C235:99 scaffold3 SAMTools SNP 717928 717928 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold3 SAMTools SNP 718405 718405 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 718435 718435 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 718459 718459 9.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold3 SAMTools SNP 718516 718516 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold3 SAMTools SNP 719098 719098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0047%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 719118 719118 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 719121 719121 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold3 SAMTools SNP 720246 720246 226 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C8%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold3 SAMTools SNP 720267 720267 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold3 SAMTools SNP 720324 720324 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold3 SAMTools SNP 720348 720348 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold3 SAMTools SNP 720770 720770 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 720836 720836 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold3 SAMTools SNP 721121 721121 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold3 SAMTools SNP 721324 721324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 721327 721327 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 721438 721438 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.53%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold3 SAMTools SNP 722030 722030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold3 SAMTools SNP 722153 722153 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold3 SAMTools SNP 722562 722562 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.31%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold3 SAMTools SNP 722809 722809 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold3 SAMTools SNP 722821 722821 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold3 SAMTools SNP 723208 723208 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.47%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold3 SAMTools SNP 723214 723214 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold3 SAMTools SNP 723230 723230 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 723456 723456 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold3 SAMTools SNP 723683 723683 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold3 SAMTools SNP 723719 723719 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold3 SAMTools SNP 723789 723789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold3 SAMTools SNP 723791 723791 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold3 SAMTools SNP 724292 724292 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.012%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold3 SAMTools SNP 724337 724337 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold3 SAMTools SNP 724828 724828 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold3 SAMTools SNP 724829 724829 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold3 SAMTools SNP 724964 724964 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold3 SAMTools SNP 724978 724978 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.041%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold3 SAMTools SNP 724993 724993 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C115:57 scaffold3 SAMTools SNP 725466 725466 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.021%2C0.18%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold3 SAMTools SNP 725478 725478 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold3 SAMTools SNP 725535 725535 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold3 SAMTools SNP 726235 726235 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.06%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold3 SAMTools SNP 726460 726460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C40%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold3 SAMTools SNP 726469 726469 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C10%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.31%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold3 SAMTools SNP 726841 726841 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.18%2C0.16%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold3 SAMTools SNP 727056 727056 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 727080 727080 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold3 SAMTools SNP 727583 727583 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold3 SAMTools SNP 727586 727586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold3 SAMTools SNP 727825 727825 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold3 SAMTools SNP 729032 729032 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold3 SAMTools SNP 729139 729139 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 730984 730984 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold3 SAMTools SNP 731566 731566 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.089%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 731746 731746 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold3 SAMTools SNP 732205 732205 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.45%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 732250 732250 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold3 SAMTools SNP 732624 732624 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C47%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold3 SAMTools SNP 732689 732689 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.013%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold3 SAMTools SNP 732699 732699 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold3 SAMTools SNP 733170 733170 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D39%2C27%2C4%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold3 SAMTools SNP 733215 733215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C41%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold3 SAMTools SNP 733961 733961 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold3 SAMTools SNP 734063 734063 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold3 SAMTools SNP 734102 734102 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold3 SAMTools SNP 734410 734410 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C53%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold3 SAMTools SNP 734455 734455 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C238:99 scaffold3 SAMTools SNP 734911 734911 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold3 SAMTools SNP 734933 734933 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold3 SAMTools SNP 735121 735121 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C30%2C0:57 scaffold3 SAMTools SNP 735817 735817 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold3 SAMTools SNP 737824 737824 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55.5%3BPV4%3D0.4%2C9.4e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C85:85 scaffold3 SAMTools SNP 738070 738070 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold3 SAMTools SNP 738121 738121 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold3 SAMTools SNP 738550 738550 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.6%2C1.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold3 SAMTools SNP 741898 741898 26.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold3 SAMTools SNP 767731 767731 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold3 SAMTools SNP 769045 769045 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 769118 769118 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C9%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.022%2C9.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold3 SAMTools SNP 769193 769193 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold3 SAMTools SNP 769520 769520 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold3 SAMTools SNP 769856 769856 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold3 SAMTools SNP 769865 769865 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 770561 770561 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold3 SAMTools SNP 770612 770612 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1%2C1%2C5.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C228:58 scaffold3 SAMTools SNP 770657 770657 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 770660 770660 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 770675 770675 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.45%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C223:99 scaffold3 SAMTools SNP 771273 771273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 771408 771408 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold3 SAMTools SNP 790911 790911 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold3 SAMTools SNP 796498 796498 8.25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C2%2C0:4 scaffold3 SAMTools SNP 799298 799298 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold3 SAMTools SNP 839918 839918 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold3 SAMTools SNP 840177 840177 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 840505 840505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 840547 840547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold3 SAMTools SNP 841435 841435 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C202:99 scaffold3 SAMTools SNP 842848 842848 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 842851 842851 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 843012 843012 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C207:99 scaffold3 SAMTools SNP 844590 844590 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00033%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold3 SAMTools SNP 844710 844710 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold3 SAMTools SNP 844982 844982 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold3 SAMTools SNP 845614 845614 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold3 SAMTools SNP 846349 846349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 846396 846396 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold3 SAMTools SNP 850184 850184 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 850540 850540 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 850564 850564 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 850906 850906 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold3 SAMTools SNP 853111 853111 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold3 SAMTools SNP 854371 854371 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold3 SAMTools SNP 855682 855682 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold3 SAMTools SNP 855762 855762 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold3 SAMTools SNP 855765 855765 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C232:99 scaffold3 SAMTools SNP 858967 858967 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C32%2C66%2C35%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C1.2e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold3 SAMTools SNP 860192 860192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold3 SAMTools SNP 861551 861551 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.61%2C7.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold3 SAMTools SNP 861740 861740 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C5.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C184:99 scaffold3 SAMTools SNP 861757 861757 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 861971 861971 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold3 SAMTools SNP 862466 862466 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold3 SAMTools SNP 862537 862537 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold3 SAMTools SNP 863195 863195 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C29%2C17%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 864021 864021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold3 SAMTools SNP 865500 865500 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C3%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold3 SAMTools SNP 867221 867221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 867587 867587 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold3 SAMTools SNP 867605 867605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold3 SAMTools SNP 867647 867647 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C10%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.38%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold3 SAMTools SNP 868037 868037 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold3 SAMTools SNP 871016 871016 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold3 SAMTools SNP 875402 875402 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold3 SAMTools SNP 875412 875412 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.055%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold3 SAMTools SNP 875785 875785 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 875787 875787 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 882747 882747 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold3 SAMTools SNP 884183 884183 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold3 SAMTools SNP 884223 884223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C9%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.03%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 884229 884229 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 884448 884448 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold3 SAMTools SNP 884454 884454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold3 SAMTools SNP 884523 884523 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0055%2C0.46%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold3 SAMTools SNP 885241 885241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C62%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 885247 885247 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C59%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.072%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 887954 887954 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 900010 900010 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C72%2C0:99 scaffold3 SAMTools SNP 900442 900442 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold3 SAMTools SNP 901088 901088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C23%2C60%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 902015 902015 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.24%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C234:99 scaffold3 SAMTools SNP 905483 905483 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.62%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold3 SAMTools SNP 905803 905803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 905864 905864 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.29%2C0.0089%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold3 SAMTools SNP 906212 906212 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold3 SAMTools SNP 907862 907862 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold3 SAMTools SNP 907863 907863 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold3 SAMTools SNP 908884 908884 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C226:99 scaffold3 SAMTools SNP 908904 908904 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C227:99 scaffold3 SAMTools SNP 908947 908947 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold3 SAMTools SNP 910917 910917 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C34%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 933975 933975 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 934073 934073 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 954716 954716 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold3 SAMTools SNP 960656 960656 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 962425 962425 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 999465 999465 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C10%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold3 SAMTools SNP 999633 999633 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C3%3BMQ%3D44%3BFQ%3D22%3BPV4%3D0.58%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold3 SAMTools SNP 1002354 1002354 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C7%3BMQ%3D34%3BFQ%3D22.9%3BPV4%3D1%2C1.4e-11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C52:53 scaffold3 SAMTools SNP 1029184 1029184 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold3 SAMTools SNP 1067464 1067464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold3 SAMTools SNP 1077411 1077411 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1078036 1078036 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold3 SAMTools SNP 1078062 1078062 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.23%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C124:79 scaffold3 SAMTools SNP 1078159 1078159 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1078213 1078213 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold3 SAMTools SNP 1078544 1078544 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold3 SAMTools SNP 1078586 1078586 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold3 SAMTools SNP 1079170 1079170 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1079226 1079226 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold3 SAMTools SNP 1079560 1079560 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold3 SAMTools SNP 1081352 1081352 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold3 SAMTools SNP 1082333 1082333 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold3 SAMTools SNP 1082708 1082708 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 1084243 1084243 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1084263 1084263 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1087038 1087038 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C48%2C0:93 scaffold3 SAMTools SNP 1087462 1087462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C56%2C4%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-14%2C1%2C1%2C1.3e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1088093 1088093 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C224%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold3 SAMTools SNP 1088339 1088339 50.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold3 SAMTools SNP 1105958 1105958 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C3.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C104:41 scaffold3 SAMTools SNP 1106359 1106359 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C43%2C87%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-18%2C3.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1108464 1108464 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold3 SAMTools SNP 1124128 1124128 67.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold3 SAMTools SNP 1124142 1124142 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold3 SAMTools SNP 1124555 1124555 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C0%2C32%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.00022%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold3 SAMTools SNP 1125002 1125002 85 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold3 SAMTools SNP 1125112 1125112 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C24%2C0:45 scaffold3 SAMTools SNP 1130761 1130761 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C27%2C0:49 scaffold3 SAMTools SNP 1130902 1130902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.019%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1132005 1132005 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1132020 1132020 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C11%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.091%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold3 SAMTools SNP 1132499 1132499 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C8%2C175%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C7.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1132538 1132538 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C24%2C151%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7e-26%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1133882 1133882 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold3 SAMTools SNP 1133897 1133897 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1136944 1136944 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C93%2C32%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1137082 1137082 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold3 SAMTools SNP 1137084 1137084 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold3 SAMTools SNP 1142847 1142847 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C3%2C70%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C2.7e-40%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold3 SAMTools SNP 1142907 1142907 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C25%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.62%2C2.7e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold3 SAMTools SNP 1143950 1143950 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.088%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C222:99 scaffold3 SAMTools SNP 1144003 1144003 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold3 SAMTools SNP 1145028 1145028 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold3 SAMTools SNP 1149379 1149379 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C13%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold3 SAMTools SNP 1149406 1149406 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 1149478 1149478 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold3 SAMTools SNP 1152618 1152618 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C235:99 scaffold3 SAMTools SNP 1152627 1152627 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.2%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C195:99 scaffold3 SAMTools SNP 1152642 1152642 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold3 SAMTools SNP 1154172 1154172 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1155647 1155647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold3 SAMTools SNP 1155669 1155669 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C195:91 scaffold3 SAMTools SNP 1155681 1155681 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.46%2C0.0018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C229:44 scaffold3 SAMTools SNP 1155816 1155816 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C24%2C0:45 scaffold3 SAMTools SNP 1163403 1163403 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold3 SAMTools SNP 1164036 1164036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold3 SAMTools SNP 1164081 1164081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C16%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1164110 1164110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C41%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1169560 1169560 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold3 SAMTools SNP 1172060 1172060 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C0%2C25%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.7e-14%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold3 SAMTools SNP 1177253 1177253 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 1177278 1177278 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold3 SAMTools SNP 1181417 1181417 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold3 SAMTools SNP 1181443 1181443 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold3 SAMTools SNP 1181502 1181502 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1181514 1181514 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1182328 1182328 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C190:91 scaffold3 SAMTools SNP 1183275 1183275 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold3 SAMTools SNP 1183311 1183311 75.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold3 SAMTools SNP 1183842 1183842 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 1183879 1183879 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1189355 1189355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1189373 1189373 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold3 SAMTools SNP 1189396 1189396 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1190378 1190378 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold3 SAMTools SNP 1191402 1191402 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C152:99 scaffold3 SAMTools SNP 1193346 1193346 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold3 SAMTools SNP 1194436 1194436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C32%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1194857 1194857 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C33%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1195363 1195363 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.13%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold3 SAMTools SNP 1195378 1195378 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.074%2C0.15%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold3 SAMTools SNP 1196329 1196329 82.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold3 SAMTools SNP 1198951 1198951 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C136:30 scaffold3 SAMTools SNP 1200150 1200150 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C54%2C0:99 scaffold3 SAMTools SNP 1200718 1200718 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold3 SAMTools SNP 1200719 1200719 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold3 SAMTools SNP 1200987 1200987 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold3 SAMTools SNP 1203374 1203374 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C37%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold3 SAMTools SNP 1205284 1205284 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1235887 1235887 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold3 SAMTools SNP 1235926 1235926 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold3 SAMTools SNP 1238032 1238032 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold3 SAMTools SNP 1239033 1239033 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold3 SAMTools SNP 1239045 1239045 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold3 SAMTools SNP 1239280 1239280 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold3 SAMTools SNP 1239296 1239296 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold3 SAMTools SNP 1239632 1239632 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.47%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C150:97 scaffold3 SAMTools SNP 1241317 1241317 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.27%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold3 SAMTools SNP 1241356 1241356 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.19%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C195:99 scaffold3 SAMTools SNP 1241723 1241723 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C54%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C202%2C0:99 scaffold3 SAMTools SNP 1242082 1242082 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C7%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.69%2C6.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold3 SAMTools SNP 1263971 1263971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1264954 1264954 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold3 SAMTools SNP 1300377 1300377 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold3 SAMTools SNP 1302649 1302649 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold3 SAMTools SNP 1304882 1304882 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C1.2e-05%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C82:41 scaffold301 SAMTools SNP 306 306 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 21910 21910 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 41276 41276 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 41339 41339 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold301 SAMTools SNP 41546 41546 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.4%2C0.19%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C107:87 scaffold301 SAMTools SNP 41574 41574 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C32:35 scaffold301 SAMTools SNP 42154 42154 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold301 SAMTools SNP 43085 43085 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold301 SAMTools SNP 43455 43455 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold301 SAMTools SNP 43470 43470 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold301 SAMTools SNP 43751 43751 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold301 SAMTools SNP 43838 43838 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 44035 44035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 44755 44755 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold301 SAMTools SNP 56213 56213 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 64824 64824 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 68479 68479 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 74690 74690 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 83283 83283 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C27:31 scaffold301 SAMTools SNP 84577 84577 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 93713 93713 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold301 SAMTools SNP 95057 95057 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 138297 138297 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 138332 138332 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 139707 139707 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold301 SAMTools SNP 139749 139749 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 139769 139769 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold301 SAMTools SNP 140508 140508 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold301 SAMTools SNP 196114 196114 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold301 SAMTools SNP 196146 196146 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold301 SAMTools SNP 196258 196258 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C38:41 scaffold301 SAMTools SNP 202013 202013 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 202116 202116 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C0.0007%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C192:47 scaffold301 SAMTools SNP 256224 256224 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold301 SAMTools SNP 256515 256515 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold301 SAMTools SNP 256581 256581 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 256618 256618 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold301 SAMTools SNP 256635 256635 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold301 SAMTools SNP 256665 256665 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 257559 257559 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 262709 262709 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold301 SAMTools SNP 263018 263018 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C17%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold301 SAMTools SNP 263303 263303 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C151%2C8%2C18%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0036%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold301 SAMTools SNP 263852 263852 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C9%2C44%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 264428 264428 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C40%2C71%2C18%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00041%2C3.4e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold301 SAMTools SNP 264673 264673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C2%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 264897 264897 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C23%2C79%2C24%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.51%2C2.6e-157%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold301 SAMTools SNP 265064 265064 27 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C41%2C32%2C56%2C0%2C53:16 scaffold301 SAMTools SNP 269525 269525 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 271119 271119 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold301 SAMTools SNP 271141 271141 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold301 SAMTools SNP 274097 274097 72.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold301 SAMTools SNP 274942 274942 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 274953 274953 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 274985 274985 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold301 SAMTools SNP 275466 275466 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold301 SAMTools SNP 275480 275480 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold301 SAMTools SNP 275806 275806 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold301 SAMTools SNP 275865 275865 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.088%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C232:99 scaffold301 SAMTools SNP 276151 276151 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 276801 276801 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C16%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.27%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold301 SAMTools SNP 277185 277185 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold301 SAMTools SNP 277408 277408 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold301 SAMTools SNP 277952 277952 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold301 SAMTools SNP 278368 278368 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold301 SAMTools SNP 280700 280700 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold301 SAMTools SNP 298295 298295 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 302989 302989 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.076%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C129:81 scaffold301 SAMTools SNP 303145 303145 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C36%2C0:69 scaffold301 SAMTools SNP 306170 306170 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold301 SAMTools SNP 306643 306643 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold301 SAMTools SNP 306649 306649 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold301 SAMTools SNP 344546 344546 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 356412 356412 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold301 SAMTools SNP 356741 356741 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold301 SAMTools SNP 357683 357683 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold301 SAMTools SNP 373265 373265 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 374756 374756 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold301 SAMTools SNP 374875 374875 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold301 SAMTools SNP 377406 377406 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 377572 377572 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C35:38 scaffold301 SAMTools SNP 378657 378657 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold301 SAMTools SNP 380365 380365 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold301 SAMTools SNP 388100 388100 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 388137 388137 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 389115 389115 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 389133 389133 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 389358 389358 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold301 SAMTools SNP 389757 389757 52.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold301 SAMTools SNP 390709 390709 44.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold301 SAMTools SNP 391020 391020 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold301 SAMTools SNP 397718 397718 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold301 SAMTools SNP 397775 397775 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold301 SAMTools SNP 398322 398322 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C100%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 398976 398976 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 399012 399012 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 399704 399704 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D977%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D373%2C31%2C522%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 399722 399722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1042%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D353%2C100%2C492%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.44%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 428500 428500 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold301 SAMTools SNP 428506 428506 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold301 SAMTools SNP 429319 429319 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold301 SAMTools SNP 429321 429321 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold301 SAMTools SNP 464486 464486 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 465619 465619 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 507598 507598 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold301 SAMTools SNP 515757 515757 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold301 SAMTools SNP 579605 579605 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold301 SAMTools SNP 580611 580611 59.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold301 SAMTools SNP 583912 583912 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold301 SAMTools SNP 584407 584407 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 585405 585405 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C3%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0015%2C0.16%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C216:62 scaffold301 SAMTools SNP 585407 585407 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.28%2C0.037%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C253:44 scaffold301 SAMTools SNP 585409 585409 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold301 SAMTools SNP 587866 587866 65.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C12:15 scaffold301 SAMTools SNP 587917 587917 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C217:99 scaffold301 SAMTools SNP 589135 589135 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold301 SAMTools SNP 589623 589623 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C226:99 scaffold301 SAMTools SNP 589656 589656 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold301 SAMTools SNP 589701 589701 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold301 SAMTools SNP 591976 591976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold301 SAMTools SNP 597147 597147 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C47%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold301 SAMTools SNP 598874 598874 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.24%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold301 SAMTools SNP 599341 599341 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold301 SAMTools SNP 600328 600328 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold301 SAMTools SNP 600347 600347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold301 SAMTools SNP 603002 603002 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold301 SAMTools SNP 604461 604461 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold301 SAMTools SNP 613347 613347 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold301 SAMTools SNP 614350 614350 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C143:74 scaffold301 SAMTools SNP 628348 628348 7.59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold301 SAMTools SNP 640998 640998 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold301 SAMTools SNP 641045 641045 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold301 SAMTools SNP 727802 727802 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.24%2C0.21%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C183:99 scaffold301 SAMTools SNP 735915 735915 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 736555 736555 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold301 SAMTools SNP 741154 741154 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 751722 751722 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 751774 751774 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C32%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.57%2C0.0044%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold301 SAMTools SNP 753843 753843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 754371 754371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 755359 755359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 755674 755674 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold301 SAMTools SNP 755676 755676 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold301 SAMTools SNP 756017 756017 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold301 SAMTools SNP 757733 757733 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold301 SAMTools SNP 757738 757738 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.31%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold301 SAMTools SNP 757753 757753 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 757755 757755 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 758707 758707 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.09%2C0.0015%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold301 SAMTools SNP 759474 759474 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.2%2C0.00014%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold301 SAMTools SNP 772033 772033 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold301 SAMTools SNP 774238 774238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold301 SAMTools SNP 774514 774514 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C135:99 scaffold301 SAMTools SNP 774526 774526 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold301 SAMTools SNP 775589 775589 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold301 SAMTools SNP 775921 775921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold301 SAMTools SNP 775928 775928 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold301 SAMTools SNP 777493 777493 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold301 SAMTools SNP 777526 777526 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold301 SAMTools SNP 777589 777589 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold301 SAMTools SNP 777613 777613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold301 SAMTools SNP 779914 779914 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold301 SAMTools SNP 779956 779956 58.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C17:20 scaffold301 SAMTools SNP 780021 780021 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 786705 786705 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold301 SAMTools SNP 786721 786721 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 787406 787406 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.2e-34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C236:42 scaffold301 SAMTools SNP 787652 787652 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 792075 792075 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold301 SAMTools SNP 796908 796908 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C54%2C0:99 scaffold301 SAMTools SNP 797103 797103 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 799557 799557 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D985%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C516%2C447%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 803514 803514 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C280%2C31%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.45%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 803629 803629 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 803992 803992 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold301 SAMTools SNP 806485 806485 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 814187 814187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C42%2C71%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00044%2C2.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 814243 814243 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C255%2C0:99 scaffold301 SAMTools SNP 814426 814426 14.4 . . REF=T;ALT=C,G,A;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C33%2C18%2C39%2C0%2C36%2C56%2C17%2C27%2C53:24 scaffold301 SAMTools SNP 833655 833655 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C23:26 scaffold301 SAMTools SNP 835452 835452 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold301 SAMTools SNP 835509 835509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0004%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold301 SAMTools SNP 840018 840018 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 841078 841078 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D218%2C30%2C64%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0013%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold301 SAMTools SNP 842504 842504 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C5%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.7%2C7.1e-18%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold301 SAMTools SNP 843197 843197 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C7%2C15%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.31%2C1.1e-18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold301 SAMTools SNP 843272 843272 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C61%2C16%2C21%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.31%2C2.2e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold301 SAMTools SNP 843461 843461 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C23%2C35%2C15%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.06%2C1.3e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold301 SAMTools SNP 844031 844031 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold301 SAMTools SNP 844311 844311 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold301 SAMTools SNP 844371 844371 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold301 SAMTools SNP 845227 845227 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C11%2C18%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold301 SAMTools SNP 845268 845268 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C9%2C26%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.69%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold301 SAMTools SNP 845287 845287 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C8%2C36%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C4.5e-13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold301 SAMTools SNP 845311 845311 107 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C142%2C115%2C255%2C0%2C247:51 scaffold301 SAMTools SNP 845594 845594 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C29%2C21%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 845610 845610 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 846008 846008 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C37%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold301 SAMTools SNP 847612 847612 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 847613 847613 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 847641 847641 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 847790 847790 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C94%2C2%2C17%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.61%2C0.011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold301 SAMTools SNP 847809 847809 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C0%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 848057 848057 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold301 SAMTools SNP 848087 848087 34.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold301 SAMTools SNP 848163 848163 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 848246 848246 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold301 SAMTools SNP 848702 848702 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C5%2C37%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold301 SAMTools SNP 848747 848747 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C47%2C51%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0056%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold301 SAMTools SNP 849078 849078 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C94%2C3%2C23%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold301 SAMTools SNP 849139 849139 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold301 SAMTools SNP 849186 849186 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.9e-22%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold301 SAMTools SNP 849292 849292 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 849684 849684 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold301 SAMTools SNP 849703 849703 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold301 SAMTools SNP 849798 849798 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C27%2C0:51 scaffold301 SAMTools SNP 850055 850055 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C84%2C0:99 scaffold301 SAMTools SNP 850267 850267 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C24%2C12%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.61%2C4.4e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold301 SAMTools SNP 850412 850412 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C14%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.00011%2C5.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold301 SAMTools SNP 850997 850997 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold301 SAMTools SNP 852781 852781 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.59%2C4.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold301 SAMTools SNP 852926 852926 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold301 SAMTools SNP 854130 854130 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 868635 868635 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold301 SAMTools SNP 871085 871085 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold301 SAMTools SNP 987553 987553 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold301 SAMTools SNP 991463 991463 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D41%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C57%2C0:99 scaffold301 SAMTools SNP 993699 993699 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 993700 993700 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 995917 995917 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 997868 997868 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1002932 1002932 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 1003001 1003001 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold301 SAMTools SNP 1022980 1022980 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold301 SAMTools SNP 1023588 1023588 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C16%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.012%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold301 SAMTools SNP 1023694 1023694 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C66%2C0:99 scaffold301 SAMTools SNP 1024329 1024329 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C48%2C0:93 scaffold301 SAMTools SNP 1024434 1024434 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold301 SAMTools SNP 1024458 1024458 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C51%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 1025331 1025331 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C40%2C13%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.058%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1025340 1025340 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C36%2C78%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-06%2C0.45%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1027000 1027000 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.045%2C1.9e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C81:61 scaffold301 SAMTools SNP 1032111 1032111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C9%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold301 SAMTools SNP 1033729 1033729 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold301 SAMTools SNP 1040321 1040321 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold301 SAMTools SNP 1040411 1040411 21.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold301 SAMTools SNP 1044518 1044518 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.00058%2C9.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold301 SAMTools SNP 1044528 1044528 222 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0%2C241%2C15%2C231:99 scaffold301 SAMTools SNP 1044554 1044554 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C54%2C0:99 scaffold301 SAMTools SNP 1045424 1045424 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C15%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.079%2C2.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold301 SAMTools SNP 1058745 1058745 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold301 SAMTools SNP 1065829 1065829 20.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C10:13 scaffold301 SAMTools SNP 1066264 1066264 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.46%2C1.9e-08%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C197:76 scaffold301 SAMTools SNP 1066489 1066489 46.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold301 SAMTools SNP 1069302 1069302 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold301 SAMTools SNP 1069332 1069332 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold301 SAMTools SNP 1069957 1069957 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold301 SAMTools SNP 1070560 1070560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold301 SAMTools SNP 1071212 1071212 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 1087343 1087343 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1090973 1090973 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1092170 1092170 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1096772 1096772 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold301 SAMTools SNP 1098180 1098180 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C30%2C0:57 scaffold301 SAMTools SNP 1098366 1098366 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C26%2C0:49 scaffold301 SAMTools SNP 1098497 1098497 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold301 SAMTools SNP 1098539 1098539 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold301 SAMTools SNP 1099552 1099552 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold301 SAMTools SNP 1099739 1099739 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold301 SAMTools SNP 1099768 1099768 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D0.4%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C77:44 scaffold301 SAMTools SNP 1099775 1099775 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold301 SAMTools SNP 1104069 1104069 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold301 SAMTools SNP 1104383 1104383 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1104422 1104422 204 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C18%2C218%2C0%2C209:99 scaffold301 SAMTools SNP 1105043 1105043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold301 SAMTools SNP 1105342 1105342 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold301 SAMTools SNP 1105402 1105402 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold301 SAMTools SNP 1105429 1105429 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C1%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C206:99 scaffold301 SAMTools SNP 1105660 1105660 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C138:99 scaffold301 SAMTools SNP 1106090 1106090 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold301 SAMTools SNP 1106249 1106249 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold301 SAMTools SNP 1106261 1106261 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 1106440 1106440 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold301 SAMTools SNP 1106453 1106453 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1106830 1106830 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 1107316 1107316 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold301 SAMTools SNP 1114753 1114753 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold301 SAMTools SNP 1115901 1115901 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C148%2C0:99 scaffold301 SAMTools SNP 1117365 1117365 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold301 SAMTools SNP 1118569 1118569 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold301 SAMTools SNP 1118614 1118614 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.31%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold301 SAMTools SNP 1119184 1119184 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold301 SAMTools SNP 1119930 1119930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1120451 1120451 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.49%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1120570 1120570 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1121136 1121136 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.6e-27%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold301 SAMTools SNP 1121860 1121860 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C152:99 scaffold301 SAMTools SNP 1122559 1122559 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold301 SAMTools SNP 1122573 1122573 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold301 SAMTools SNP 1122595 1122595 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.22%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold301 SAMTools SNP 1125829 1125829 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold301 SAMTools SNP 1134553 1134553 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold301 SAMTools SNP 1142967 1142967 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1146892 1146892 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold301 SAMTools SNP 1151031 1151031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold301 SAMTools SNP 1151434 1151434 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C87%2C0:99 scaffold301 SAMTools SNP 1151503 1151503 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 1151559 1151559 64 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C156%2C126%2C106%2C0%2C88:57 scaffold301 SAMTools SNP 1151706 1151706 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold301 SAMTools SNP 1152269 1152269 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold301 SAMTools SNP 1152375 1152375 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.23%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold301 SAMTools SNP 1152432 1152432 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold301 SAMTools SNP 1153342 1153342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold301 SAMTools SNP 1153392 1153392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1153424 1153424 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C21%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.026%2C5.5e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold301 SAMTools SNP 1153493 1153493 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold301 SAMTools SNP 1153565 1153565 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C22%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C150:99 scaffold301 SAMTools SNP 1154168 1154168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold301 SAMTools SNP 1154304 1154304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C9%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.59%2C0.062%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold301 SAMTools SNP 1155179 1155179 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.51%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold301 SAMTools SNP 1157573 1157573 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1165032 1165032 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C64%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.37%2C4e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold301 SAMTools SNP 1166613 1166613 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1166677 1166677 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold301 SAMTools SNP 1169799 1169799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.22%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1170157 1170157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 1170474 1170474 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C35%2C0%2C13%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.00056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold301 SAMTools SNP 1170600 1170600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C45%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold301 SAMTools SNP 1170914 1170914 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C7%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold301 SAMTools SNP 1170950 1170950 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C56%2C5%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.67%2C1%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold301 SAMTools SNP 1171120 1171120 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C19%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.13%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1172138 1172138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold301 SAMTools SNP 1172165 1172165 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.027%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C179:99 scaffold301 SAMTools SNP 1172201 1172201 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold301 SAMTools SNP 1177982 1177982 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0047%2C0.21%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold301 SAMTools SNP 1178019 1178019 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.004%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold301 SAMTools SNP 1178070 1178070 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D86.2%3BPV4%3D0.14%2C0.042%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C121:99 scaffold301 SAMTools SNP 1179937 1179937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold301 SAMTools SNP 1179973 1179973 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1180252 1180252 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C16%2C128%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C4.8e-181%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1186636 1186636 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1186672 1186672 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold301 SAMTools SNP 1188151 1188151 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1193878 1193878 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold301 SAMTools SNP 1194004 1194004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 1194454 1194454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold301 SAMTools SNP 1194503 1194503 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C1%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C253:40 scaffold301 SAMTools SNP 1194915 1194915 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold301 SAMTools SNP 1194921 1194921 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold301 SAMTools SNP 1195713 1195713 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.15%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1197661 1197661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold301 SAMTools SNP 1197700 1197700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold301 SAMTools SNP 1198264 1198264 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold301 SAMTools SNP 1198306 1198306 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold301 SAMTools SNP 1198351 1198351 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold301 SAMTools SNP 1198360 1198360 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.27%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold301 SAMTools SNP 1198927 1198927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C5%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold301 SAMTools SNP 1200964 1200964 22.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold301 SAMTools SNP 1202082 1202082 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold301 SAMTools SNP 1202089 1202089 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1202091 1202091 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1206584 1206584 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C17%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold301 SAMTools SNP 1206601 1206601 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold301 SAMTools SNP 1206609 1206609 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold301 SAMTools SNP 1213158 1213158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold301 SAMTools SNP 1213434 1213434 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold301 SAMTools SNP 1213566 1213566 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C8%2C52%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1213974 1213974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold301 SAMTools SNP 1214390 1214390 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C57:43 scaffold301 SAMTools SNP 1214399 1214399 18.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold301 SAMTools SNP 1214496 1214496 85.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold301 SAMTools SNP 1215092 1215092 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold301 SAMTools SNP 1215093 1215093 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold301 SAMTools SNP 1215289 1215289 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C5%3BMQ%3D44%3BFQ%3D116%3BPV4%3D0.082%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C143:99 scaffold301 SAMTools SNP 1227997 1227997 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D35%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C18:21 scaffold304 SAMTools SNP 1554 1554 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 7247 7247 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.53%2C0.33%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C227:99 scaffold304 SAMTools SNP 7755 7755 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C12%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.35%2C0.14%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C248:99 scaffold304 SAMTools SNP 7761 7761 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C11%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.33%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C247:99 scaffold304 SAMTools SNP 7779 7779 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C23%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.32%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C218:99 scaffold304 SAMTools SNP 8318 8318 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 8343 8343 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold304 SAMTools SNP 8393 8393 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold304 SAMTools SNP 8461 8461 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold304 SAMTools SNP 8472 8472 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 66177 66177 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold304 SAMTools SNP 85636 85636 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold304 SAMTools SNP 142555 142555 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.37%2C1.6e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C158:82 scaffold304 SAMTools SNP 147193 147193 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold304 SAMTools SNP 147227 147227 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 176647 176647 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold304 SAMTools SNP 181221 181221 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold304 SAMTools SNP 188258 188258 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C57%2C0:99 scaffold304 SAMTools SNP 190609 190609 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D39%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00095%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold304 SAMTools SNP 191455 191455 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 192083 192083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 193288 193288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C23%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-10%2C0.00081%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 193339 193339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C39%2C0%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C1%2C1%2C2.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 193670 193670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C12%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold304 SAMTools SNP 193706 193706 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold304 SAMTools SNP 194085 194085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D16%2C0%2C53%2C72%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold304 SAMTools SNP 194577 194577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 196026 196026 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C139%2C1%2C78%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00018%2C0.08%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold304 SAMTools SNP 196061 196061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C87%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 196122 196122 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 196593 196593 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C68%2C20%3BMQ%3D50%3BFQ%3D-169%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C142%2C0:99 scaffold304 SAMTools SNP 197402 197402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 197419 197419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C22%2C71%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 198287 198287 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C23%2C49%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 198863 198863 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C24%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 198893 198893 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C97%2C0%2C26%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.073%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold304 SAMTools SNP 198905 198905 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 203503 203503 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 220596 220596 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 238976 238976 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 241884 241884 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold304 SAMTools SNP 242270 242270 52.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold304 SAMTools SNP 243641 243641 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C5.3e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold304 SAMTools SNP 243721 243721 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold304 SAMTools SNP 243952 243952 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold304 SAMTools SNP 245868 245868 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.55%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C210:39 scaffold304 SAMTools SNP 246128 246128 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C4.5e-27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold304 SAMTools SNP 246175 246175 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.2e-15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold304 SAMTools SNP 246544 246544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 246866 246866 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold304 SAMTools SNP 246884 246884 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0048%2C1.1e-05%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold304 SAMTools SNP 251546 251546 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 252975 252975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 253315 253315 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.6%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold304 SAMTools SNP 253325 253325 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.28%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold304 SAMTools SNP 256286 256286 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold304 SAMTools SNP 259080 259080 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold304 SAMTools SNP 259890 259890 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold304 SAMTools SNP 270168 270168 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C72%2C0:99 scaffold304 SAMTools SNP 271445 271445 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 274622 274622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold304 SAMTools SNP 274623 274623 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold304 SAMTools SNP 277514 277514 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C178:79 scaffold304 SAMTools SNP 293519 293519 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold304 SAMTools SNP 338719 338719 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold304 SAMTools SNP 339241 339241 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold304 SAMTools SNP 340104 340104 26.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold304 SAMTools SNP 340929 340929 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 341344 341344 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 347743 347743 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 367462 367462 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C135:99 scaffold304 SAMTools SNP 367865 367865 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold304 SAMTools SNP 367871 367871 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C5%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.39%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold304 SAMTools SNP 368790 368790 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C12%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold304 SAMTools SNP 368821 368821 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C18%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold304 SAMTools SNP 368938 368938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 369961 369961 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold304 SAMTools SNP 369982 369982 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C20%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.049%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold304 SAMTools SNP 370401 370401 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold304 SAMTools SNP 371313 371313 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold304 SAMTools SNP 371319 371319 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold304 SAMTools SNP 372151 372151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold304 SAMTools SNP 372419 372419 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.18%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C195:99 scaffold304 SAMTools SNP 373206 373206 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold304 SAMTools SNP 373271 373271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold304 SAMTools SNP 374171 374171 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold304 SAMTools SNP 380820 380820 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C2%2C43%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 382605 382605 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold304 SAMTools SNP 391059 391059 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 391094 391094 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold304 SAMTools SNP 392980 392980 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold304 SAMTools SNP 392998 392998 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold304 SAMTools SNP 396356 396356 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C482%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 396421 396421 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C279%2C39%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 397540 397540 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold304 SAMTools SNP 397939 397939 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C166:99 scaffold304 SAMTools SNP 398124 398124 55.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold304 SAMTools SNP 398270 398270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 398430 398430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold304 SAMTools SNP 398483 398483 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C40%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold304 SAMTools SNP 399008 399008 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold304 SAMTools SNP 399868 399868 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C372%2C64%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 399893 399893 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold304 SAMTools SNP 399957 399957 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D902%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C666%2C189%2C3%3BMQ%3D48%3BFQ%3D101%3BPV4%3D1.7e-146%2C1%2C1%2C3.3e-135;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold304 SAMTools SNP 399977 399977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D732%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C66%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C0.44%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 401169 401169 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.00075%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold304 SAMTools SNP 401174 401174 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.53%2C0.18%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold304 SAMTools SNP 401175 401175 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold304 SAMTools SNP 401178 401178 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.041%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C242:90 scaffold304 SAMTools SNP 401184 401184 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C0%2C56%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C17%2C0:31 scaffold304 SAMTools SNP 401779 401779 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C42:45 scaffold304 SAMTools SNP 402496 402496 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C74%2C61%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold304 SAMTools SNP 402546 402546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C61%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold304 SAMTools SNP 403248 403248 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C15%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C154%2C0:99 scaffold304 SAMTools SNP 403604 403604 178 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C255%2C0%2C212%2C255%2C209:99 scaffold304 SAMTools SNP 432358 432358 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold304 SAMTools SNP 432367 432367 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold304 SAMTools SNP 432422 432422 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold304 SAMTools SNP 434289 434289 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold304 SAMTools SNP 436446 436446 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 436478 436478 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 436892 436892 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 437029 437029 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold304 SAMTools SNP 437054 437054 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold304 SAMTools SNP 437201 437201 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold304 SAMTools SNP 437219 437219 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold304 SAMTools SNP 437245 437245 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C200:99 scaffold304 SAMTools SNP 437383 437383 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold304 SAMTools SNP 440492 440492 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold304 SAMTools SNP 440520 440520 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold304 SAMTools SNP 440615 440615 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold304 SAMTools SNP 441059 441059 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold304 SAMTools SNP 441814 441814 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.46%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold304 SAMTools SNP 441849 441849 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold304 SAMTools SNP 442306 442306 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold304 SAMTools SNP 442731 442731 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 443483 443483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold304 SAMTools SNP 462222 462222 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold304 SAMTools SNP 462258 462258 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold305 SAMTools SNP 1231 1231 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 1261 1261 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 1919 1919 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold305 SAMTools SNP 1940 1940 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold305 SAMTools SNP 2147 2147 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold305 SAMTools SNP 2171 2171 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold305 SAMTools SNP 3078 3078 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C1%2C5%3BMQ%3D44%3BFQ%3D122%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold305 SAMTools SNP 5327 5327 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold305 SAMTools SNP 5355 5355 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C39%2C0:75 scaffold305 SAMTools SNP 8619 8619 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C0.023%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C206:62 scaffold305 SAMTools SNP 11662 11662 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.049%2C3.7e-05%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold305 SAMTools SNP 12552 12552 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C34%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold305 SAMTools SNP 17884 17884 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold305 SAMTools SNP 20701 20701 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.097%2C0.091%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold305 SAMTools SNP 20722 20722 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.47%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold305 SAMTools SNP 20726 20726 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold305 SAMTools SNP 29918 29918 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold305 SAMTools SNP 42261 42261 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 42388 42388 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 43730 43730 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C7%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.049%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold305 SAMTools SNP 43842 43842 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C12%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold305 SAMTools SNP 44894 44894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.31%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 44912 44912 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold305 SAMTools SNP 44918 44918 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.075%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold305 SAMTools SNP 44948 44948 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold305 SAMTools SNP 45032 45032 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold305 SAMTools SNP 45035 45035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 45571 45571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold305 SAMTools SNP 45679 45679 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold305 SAMTools SNP 45715 45715 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold305 SAMTools SNP 46644 46644 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0018%2C0.015%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold305 SAMTools SNP 46671 46671 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C7%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.027%2C3.7e-22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold305 SAMTools SNP 46719 46719 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C56%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.26%2C6.9e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold305 SAMTools SNP 46806 46806 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold305 SAMTools SNP 46821 46821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C7%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.13%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 46830 46830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 48941 48941 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold305 SAMTools SNP 49339 49339 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C6%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.18%2C0.037%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold305 SAMTools SNP 50870 50870 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C5%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold305 SAMTools SNP 52004 52004 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.055%2C0.0049%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold305 SAMTools SNP 52952 52952 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C3%2C58%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 52973 52973 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C2%2C61%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 53039 53039 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C59%2C0%2C82%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.18%2C1.5e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold305 SAMTools SNP 146541 146541 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold305 SAMTools SNP 197525 197525 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold305 SAMTools SNP 220372 220372 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 220381 220381 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 220760 220760 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold305 SAMTools SNP 221096 221096 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C22%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold305 SAMTools SNP 222774 222774 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold305 SAMTools SNP 222870 222870 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C127:99 scaffold305 SAMTools SNP 223414 223414 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold305 SAMTools SNP 223469 223469 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 223840 223840 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold305 SAMTools SNP 224017 224017 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold305 SAMTools SNP 224044 224044 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold305 SAMTools SNP 224083 224083 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold305 SAMTools SNP 224522 224522 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 225106 225106 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold305 SAMTools SNP 225121 225121 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold305 SAMTools SNP 225857 225857 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 225890 225890 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold305 SAMTools SNP 226770 226770 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold305 SAMTools SNP 227340 227340 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C5.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C29:32 scaffold305 SAMTools SNP 228757 228757 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold305 SAMTools SNP 230632 230632 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold305 SAMTools SNP 230647 230647 55.8 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold305 SAMTools SNP 230653 230653 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 231274 231274 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 232509 232509 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold305 SAMTools SNP 232528 232528 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold305 SAMTools SNP 232536 232536 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 232545 232545 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 232799 232799 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold305 SAMTools SNP 232856 232856 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 232892 232892 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold305 SAMTools SNP 232901 232901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold305 SAMTools SNP 233244 233244 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 235596 235596 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 235635 235635 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 236032 236032 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 236071 236071 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold305 SAMTools SNP 236210 236210 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold305 SAMTools SNP 238111 238111 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold305 SAMTools SNP 238132 238132 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold305 SAMTools SNP 238156 238156 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold305 SAMTools SNP 239097 239097 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold305 SAMTools SNP 239099 239099 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C254:99 scaffold305 SAMTools SNP 239108 239108 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C0.0051%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold305 SAMTools SNP 239141 239141 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold305 SAMTools SNP 239627 239627 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 239997 239997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold305 SAMTools SNP 240054 240054 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold305 SAMTools SNP 240097 240097 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold305 SAMTools SNP 240131 240131 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold305 SAMTools SNP 240347 240347 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold305 SAMTools SNP 240782 240782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold305 SAMTools SNP 241131 241131 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold305 SAMTools SNP 241230 241230 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 241564 241564 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold305 SAMTools SNP 242682 242682 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold305 SAMTools SNP 242745 242745 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 243171 243171 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold305 SAMTools SNP 243188 243188 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold305 SAMTools SNP 243228 243228 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold305 SAMTools SNP 243234 243234 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold305 SAMTools SNP 246170 246170 12 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold305 SAMTools SNP 247781 247781 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C0.074%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C128:46 scaffold305 SAMTools SNP 247808 247808 4.13 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C4%2C29%2C7%2C0%2C32:29 scaffold305 SAMTools SNP 249302 249302 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold305 SAMTools SNP 249775 249775 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold305 SAMTools SNP 249799 249799 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold305 SAMTools SNP 249832 249832 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold305 SAMTools SNP 256258 256258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 259392 259392 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.63%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold305 SAMTools SNP 259395 259395 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.04%2C2.3e-06%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold305 SAMTools SNP 259409 259409 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 259600 259600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold305 SAMTools SNP 259782 259782 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.066%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold305 SAMTools SNP 259798 259798 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold305 SAMTools SNP 259965 259965 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold305 SAMTools SNP 260126 260126 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold305 SAMTools SNP 260159 260159 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.65%2C0.014%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold305 SAMTools SNP 260177 260177 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold305 SAMTools SNP 260253 260253 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold305 SAMTools SNP 260600 260600 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 260747 260747 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 260805 260805 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold305 SAMTools SNP 260997 260997 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold305 SAMTools SNP 261021 261021 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold305 SAMTools SNP 261131 261131 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 261156 261156 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 265090 265090 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C81%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C255%2C0:99 scaffold305 SAMTools SNP 267931 267931 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 268074 268074 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold305 SAMTools SNP 269191 269191 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold305 SAMTools SNP 269317 269317 133 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C86%2C74%2C164%2C0%2C158:21 scaffold305 SAMTools SNP 269440 269440 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C76:79 scaffold305 SAMTools SNP 269443 269443 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.39%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold305 SAMTools SNP 269553 269553 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C47%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.053%2C9.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold305 SAMTools SNP 269569 269569 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C5%2C1%2C15%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1.8e-12%2C0.47%2C1%2C2.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold305 SAMTools SNP 269605 269605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C29%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 271476 271476 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold305 SAMTools SNP 278988 278988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold305 SAMTools SNP 279007 279007 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold305 SAMTools SNP 285754 285754 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold305 SAMTools SNP 287107 287107 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 288290 288290 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 290383 290383 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold305 SAMTools SNP 290395 290395 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C40%2C0%3BMQ%3D49%3BFQ%3D-60%3BPV4%3D1%2C0.015%2C0.38%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C33%2C0:63 scaffold305 SAMTools SNP 291707 291707 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.3e-12%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C154:34 scaffold305 SAMTools SNP 294366 294366 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 295062 295062 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C190%2C13%2C82%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.089%2C3.7e-147%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold305 SAMTools SNP 296695 296695 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 298080 298080 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C8%2C84%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0066%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 298089 298089 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C32%2C48%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.00015%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold305 SAMTools SNP 298135 298135 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C68%2C10%2C38%3BMQ%3D49%3BFQ%3D91%3BPV4%3D0.82%2C2.1e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold305 SAMTools SNP 298564 298564 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C22%2C0%2C8%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D0.0017%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold305 SAMTools SNP 298599 298599 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C16%2C23%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.056%2C0.19%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 298951 298951 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 300867 300867 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C44%2C2%2C20%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0087%2C0.016%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold305 SAMTools SNP 300893 300893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C20%2C49%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold305 SAMTools SNP 300923 300923 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C59%2C0%2C22%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold305 SAMTools SNP 301283 301283 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold305 SAMTools SNP 301827 301827 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold305 SAMTools SNP 309113 309113 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold305 SAMTools SNP 309329 309329 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold305 SAMTools SNP 310618 310618 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 310619 310619 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold305 SAMTools SNP 312107 312107 13.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C18%2C0:27 scaffold305 SAMTools SNP 312519 312519 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold305 SAMTools SNP 313395 313395 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold305 SAMTools SNP 313811 313811 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold305 SAMTools SNP 316137 316137 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C7%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.011%2C1%2C1%2C5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold305 SAMTools SNP 322359 322359 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C2%2C16%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.48%2C0.29%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold305 SAMTools SNP 322818 322818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold305 SAMTools SNP 327372 327372 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C41%2C13%2C28%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.65%2C9.4e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold305 SAMTools SNP 329361 329361 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold305 SAMTools SNP 330064 330064 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 331524 331524 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 331677 331677 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 331686 331686 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 333021 333021 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold305 SAMTools SNP 333089 333089 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold305 SAMTools SNP 334921 334921 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 339608 339608 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 341111 341111 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 341250 341250 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 341358 341358 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold305 SAMTools SNP 341394 341394 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C236:99 scaffold305 SAMTools SNP 341745 341745 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold305 SAMTools SNP 341808 341808 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1.5e-19%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C240:48 scaffold305 SAMTools SNP 342028 342028 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C71:74 scaffold305 SAMTools SNP 342738 342738 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold305 SAMTools SNP 343103 343103 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold305 SAMTools SNP 343184 343184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold305 SAMTools SNP 343989 343989 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 344246 344246 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold305 SAMTools SNP 344354 344354 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold305 SAMTools SNP 344588 344588 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold305 SAMTools SNP 344633 344633 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 345471 345471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 346666 346666 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 346831 346831 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 346880 346880 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold305 SAMTools SNP 347231 347231 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold305 SAMTools SNP 347271 347271 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 348324 348324 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 348420 348420 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold305 SAMTools SNP 349313 349313 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold305 SAMTools SNP 349338 349338 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold305 SAMTools SNP 349339 349339 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold305 SAMTools SNP 349564 349564 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 349588 349588 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C188:99 scaffold305 SAMTools SNP 349849 349849 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold305 SAMTools SNP 350096 350096 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold305 SAMTools SNP 352844 352844 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 352886 352886 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 354223 354223 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 354540 354540 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold305 SAMTools SNP 354558 354558 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold305 SAMTools SNP 355364 355364 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C188:72 scaffold305 SAMTools SNP 355370 355370 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D94.8%3BPV4%3D0.44%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C122:99 scaffold305 SAMTools SNP 355389 355389 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.071%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold305 SAMTools SNP 356023 356023 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 356492 356492 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 356513 356513 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 358704 358704 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold305 SAMTools SNP 359273 359273 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold305 SAMTools SNP 359312 359312 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C158:74 scaffold305 SAMTools SNP 359590 359590 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold305 SAMTools SNP 368818 368818 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C39%2C0:75 scaffold305 SAMTools SNP 369059 369059 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C26%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold305 SAMTools SNP 369108 369108 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C1%2C14%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-38%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 371341 371341 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C99%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.0085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 371343 371343 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C100%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C0.034%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 371475 371475 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.32%2C1.3e-09%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C206:41 scaffold305 SAMTools SNP 371583 371583 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C255%2C0:99 scaffold305 SAMTools SNP 371709 371709 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C45%2C0:87 scaffold305 SAMTools SNP 371847 371847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D874%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C749%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold305 SAMTools SNP 371867 371867 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D784%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C137%2C0%2C622%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold305 SAMTools SNP 378047 378047 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 382881 382881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 382926 382926 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.54%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold305 SAMTools SNP 382938 382938 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.13%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold305 SAMTools SNP 382962 382962 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold305 SAMTools SNP 382965 382965 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0027%2C0.044%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold305 SAMTools SNP 385706 385706 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold305 SAMTools SNP 387865 387865 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C108%2C0:99 scaffold305 SAMTools SNP 387979 387979 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold305 SAMTools SNP 388027 388027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C3%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold305 SAMTools SNP 392211 392211 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C21%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 393824 393824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C12%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 394805 394805 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold305 SAMTools SNP 394838 394838 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold305 SAMTools SNP 394901 394901 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C225:99 scaffold305 SAMTools SNP 397490 397490 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold305 SAMTools SNP 397580 397580 61.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold305 SAMTools SNP 398005 398005 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0008%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold305 SAMTools SNP 398290 398290 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C54%2C0:99 scaffold305 SAMTools SNP 399428 399428 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C27%2C10%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.76%2C5.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold305 SAMTools SNP 399443 399443 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C20%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.77%2C1.7e-61%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold305 SAMTools SNP 399609 399609 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C27:30 scaffold305 SAMTools SNP 400217 400217 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold305 SAMTools SNP 400616 400616 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C158:95 scaffold305 SAMTools SNP 400763 400763 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold305 SAMTools SNP 401298 401298 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold305 SAMTools SNP 403644 403644 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C19%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 404454 404454 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold305 SAMTools SNP 404490 404490 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold305 SAMTools SNP 404934 404934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold305 SAMTools SNP 404958 404958 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C2%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold305 SAMTools SNP 404995 404995 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.18%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold305 SAMTools SNP 406183 406183 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold305 SAMTools SNP 406891 406891 36.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold305 SAMTools SNP 406899 406899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 407222 407222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 407674 407674 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 407691 407691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold305 SAMTools SNP 408111 408111 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold305 SAMTools SNP 408183 408183 46.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold305 SAMTools SNP 408258 408258 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold305 SAMTools SNP 408490 408490 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold305 SAMTools SNP 408572 408572 34.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold305 SAMTools SNP 410122 410122 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C29%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C126%2C0:99 scaffold305 SAMTools SNP 411392 411392 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.56%2C0.32%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold305 SAMTools SNP 412345 412345 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold305 SAMTools SNP 414959 414959 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold305 SAMTools SNP 419586 419586 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 457654 457654 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 457664 457664 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 457703 457703 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 457905 457905 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 457923 457923 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 458243 458243 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 458861 458861 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 494185 494185 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold305 SAMTools SNP 494401 494401 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold305 SAMTools SNP 499676 499676 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold305 SAMTools SNP 501227 501227 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold305 SAMTools SNP 501298 501298 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 501308 501308 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 502551 502551 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold305 SAMTools SNP 502892 502892 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 502922 502922 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 503197 503197 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold305 SAMTools SNP 503519 503519 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 504333 504333 114 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.011%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold305 SAMTools SNP 506695 506695 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold305 SAMTools SNP 506705 506705 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 508522 508522 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold305 SAMTools SNP 508773 508773 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold305 SAMTools SNP 508791 508791 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 508814 508814 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C252:99 scaffold305 SAMTools SNP 509772 509772 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.64%2C4.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold305 SAMTools SNP 513763 513763 86.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold305 SAMTools SNP 513988 513988 17.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold305 SAMTools SNP 514525 514525 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C9.7e-31%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold305 SAMTools SNP 514830 514830 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold305 SAMTools SNP 515903 515903 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold305 SAMTools SNP 520416 520416 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.023%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C174:87 scaffold305 SAMTools SNP 520585 520585 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 525687 525687 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold305 SAMTools SNP 525692 525692 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold305 SAMTools SNP 525749 525749 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold305 SAMTools SNP 527271 527271 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 527282 527282 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold305 SAMTools SNP 532358 532358 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.01%2C4.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C188:39 scaffold305 SAMTools SNP 532489 532489 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D1%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C32:35 scaffold305 SAMTools SNP 532590 532590 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold305 SAMTools SNP 534874 534874 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C7.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C97:78 scaffold305 SAMTools SNP 534899 534899 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold305 SAMTools SNP 534933 534933 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C16%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold305 SAMTools SNP 534935 534935 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold305 SAMTools SNP 535991 535991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.077%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold305 SAMTools SNP 536009 536009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold305 SAMTools SNP 537778 537778 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold305 SAMTools SNP 538512 538512 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold305 SAMTools SNP 539966 539966 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C45%2C0:87 scaffold307 SAMTools SNP 13785 13785 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold307 SAMTools SNP 13910 13910 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold307 SAMTools SNP 13911 13911 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 1409 1409 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 3164 3164 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 3232 3232 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 4472 4472 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 5965 5965 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C99%2C0:99 scaffold308 SAMTools SNP 37034 37034 165 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.0013%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold308 SAMTools SNP 37529 37529 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold308 SAMTools SNP 37587 37587 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold308 SAMTools SNP 38728 38728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 38755 38755 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold308 SAMTools SNP 38999 38999 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 39059 39059 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 39074 39074 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 42843 42843 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.078%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C168:42 scaffold308 SAMTools SNP 42899 42899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold308 SAMTools SNP 42917 42917 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.61%2C0.18%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold308 SAMTools SNP 43180 43180 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold308 SAMTools SNP 44907 44907 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 45269 45269 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold308 SAMTools SNP 49487 49487 32.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold308 SAMTools SNP 64751 64751 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold308 SAMTools SNP 64793 64793 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold308 SAMTools SNP 64798 64798 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C222:44 scaffold308 SAMTools SNP 64829 64829 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C183%2C2%2C67%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.52%2C1e-130%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold308 SAMTools SNP 67899 67899 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C243:99 scaffold308 SAMTools SNP 67916 67916 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold308 SAMTools SNP 74395 74395 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold308 SAMTools SNP 74398 74398 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold308 SAMTools SNP 74458 74458 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 74467 74467 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold308 SAMTools SNP 81993 81993 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold308 SAMTools SNP 82314 82314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C62%2C29%2C24%3BMQ%3D35%3BFQ%3D223%3BPV4%3D0.062%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold308 SAMTools SNP 85478 85478 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D8%2C17%2C16%2C6%3BMQ%3D13%3BFQ%3D4.13%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C29:32 scaffold308 SAMTools SNP 89975 89975 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C17%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold308 SAMTools SNP 91667 91667 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C11%2C6%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.094%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold308 SAMTools SNP 93057 93057 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C192:99 scaffold308 SAMTools SNP 95095 95095 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.28%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C234:99 scaffold308 SAMTools SNP 95128 95128 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 95146 95146 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold308 SAMTools SNP 95651 95651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C36%2C1%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.053%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold308 SAMTools SNP 108325 108325 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold308 SAMTools SNP 108376 108376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold308 SAMTools SNP 109833 109833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold308 SAMTools SNP 115626 115626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold308 SAMTools SNP 115665 115665 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold308 SAMTools SNP 119275 119275 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold308 SAMTools SNP 119364 119364 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold308 SAMTools SNP 119403 119403 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold308 SAMTools SNP 120089 120089 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C18%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold308 SAMTools SNP 120798 120798 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.54%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold308 SAMTools SNP 120911 120911 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.15%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold308 SAMTools SNP 121199 121199 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0023%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold308 SAMTools SNP 121262 121262 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold308 SAMTools SNP 121400 121400 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold308 SAMTools SNP 121439 121439 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold308 SAMTools SNP 121742 121742 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold308 SAMTools SNP 121751 121751 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold308 SAMTools SNP 122263 122263 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 122266 122266 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold308 SAMTools SNP 122487 122487 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold308 SAMTools SNP 124462 124462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold308 SAMTools SNP 126636 126636 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.5%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold308 SAMTools SNP 127029 127029 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.022%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C181:99 scaffold308 SAMTools SNP 127074 127074 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold308 SAMTools SNP 127101 127101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold308 SAMTools SNP 127244 127244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold308 SAMTools SNP 127972 127972 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold308 SAMTools SNP 128005 128005 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold308 SAMTools SNP 128185 128185 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold308 SAMTools SNP 128584 128584 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold308 SAMTools SNP 130521 130521 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.43%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold308 SAMTools SNP 136171 136171 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold308 SAMTools SNP 136180 136180 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold308 SAMTools SNP 136385 136385 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold308 SAMTools SNP 136493 136493 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.46%2C1.8e-10%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold308 SAMTools SNP 136523 136523 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold308 SAMTools SNP 136604 136604 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold308 SAMTools SNP 136615 136615 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold308 SAMTools SNP 137423 137423 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold308 SAMTools SNP 137786 137786 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C164:99 scaffold308 SAMTools SNP 138209 138209 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold308 SAMTools SNP 139211 139211 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold308 SAMTools SNP 144608 144608 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 145041 145041 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 147817 147817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 147824 147824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 157168 157168 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 160430 160430 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold308 SAMTools SNP 163102 163102 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold308 SAMTools SNP 163113 163113 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold308 SAMTools SNP 163553 163553 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 163572 163572 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 163802 163802 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold308 SAMTools SNP 163812 163812 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold308 SAMTools SNP 163839 163839 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 164809 164809 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold308 SAMTools SNP 166970 166970 24.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold308 SAMTools SNP 174281 174281 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 174293 174293 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 209331 209331 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold308 SAMTools SNP 212458 212458 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 215985 215985 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 217475 217475 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold308 SAMTools SNP 222425 222425 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 255146 255146 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold308 SAMTools SNP 263863 263863 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold308 SAMTools SNP 269010 269010 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 269038 269038 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold308 SAMTools SNP 269283 269283 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D47.8%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C76:78 scaffold309 SAMTools SNP 12739 12739 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 14704 14704 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold309 SAMTools SNP 14983 14983 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 16489 16489 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold309 SAMTools SNP 16539 16539 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold309 SAMTools SNP 16761 16761 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold309 SAMTools SNP 17056 17056 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold309 SAMTools SNP 17149 17149 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0011%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold309 SAMTools SNP 17227 17227 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold309 SAMTools SNP 18621 18621 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.1e-23%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C247:58 scaffold309 SAMTools SNP 18754 18754 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C6%2C16%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.021%2C1%2C1%2C3.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold309 SAMTools SNP 19149 19149 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold309 SAMTools SNP 19237 19237 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold309 SAMTools SNP 19853 19853 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold309 SAMTools SNP 19880 19880 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C69:72 scaffold309 SAMTools SNP 20654 20654 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold309 SAMTools SNP 20925 20925 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 20943 20943 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 22280 22280 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold309 SAMTools SNP 23087 23087 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C33%2C0:63 scaffold309 SAMTools SNP 23309 23309 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C33%2C0:63 scaffold309 SAMTools SNP 31030 31030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C404%3BMQ%3D47%3BFQ%3D-282%3BPV4%3D1%2C0.43%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold309 SAMTools SNP 31675 31675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C332%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold309 SAMTools SNP 35057 35057 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C239%2C41%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1.5e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 36712 36712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C49%2C66%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 36826 36826 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C6%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0095%2C4.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold309 SAMTools SNP 41304 41304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C9%2C42%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 41332 41332 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C10%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 41358 41358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold309 SAMTools SNP 41457 41457 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C52%2C20%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1.1e-09%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold309 SAMTools SNP 43159 43159 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 43207 43207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold309 SAMTools SNP 43222 43222 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C16%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold309 SAMTools SNP 43528 43528 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold309 SAMTools SNP 43949 43949 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C178%2C6%2C107%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C9.4e-198%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold309 SAMTools SNP 44050 44050 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C116:41 scaffold309 SAMTools SNP 45262 45262 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold309 SAMTools SNP 56221 56221 31.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold309 SAMTools SNP 72159 72159 26.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold309 SAMTools SNP 84271 84271 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C188:99 scaffold309 SAMTools SNP 84296 84296 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.18%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C223:99 scaffold309 SAMTools SNP 86369 86369 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold309 SAMTools SNP 98118 98118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 98182 98182 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold309 SAMTools SNP 102729 102729 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 103829 103829 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold309 SAMTools SNP 104137 104137 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold309 SAMTools SNP 105820 105820 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.56%2C0.22%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold309 SAMTools SNP 107502 107502 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C0.33%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold309 SAMTools SNP 110377 110377 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.055%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold309 SAMTools SNP 110654 110654 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold309 SAMTools SNP 110715 110715 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold309 SAMTools SNP 110789 110789 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold309 SAMTools SNP 111206 111206 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold309 SAMTools SNP 111528 111528 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold309 SAMTools SNP 111547 111547 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C85:28 scaffold309 SAMTools SNP 111589 111589 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold309 SAMTools SNP 111605 111605 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold309 SAMTools SNP 111637 111637 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold309 SAMTools SNP 112011 112011 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.27%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold309 SAMTools SNP 116122 116122 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.3e-14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C174:42 scaffold309 SAMTools SNP 116809 116809 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold309 SAMTools SNP 117172 117172 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold309 SAMTools SNP 117481 117481 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 122308 122308 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold309 SAMTools SNP 133042 133042 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold309 SAMTools SNP 134480 134480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold309 SAMTools SNP 140538 140538 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold309 SAMTools SNP 150372 150372 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold309 SAMTools SNP 176323 176323 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold31 SAMTools SNP 13628 13628 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold31 SAMTools SNP 16963 16963 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D45%3BFQ%3D10.4%3BPV4%3D1%2C0.0013%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold31 SAMTools SNP 44153 44153 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold31 SAMTools SNP 44202 44202 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.031%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold31 SAMTools SNP 45643 45643 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold31 SAMTools SNP 45714 45714 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C71:28 scaffold31 SAMTools SNP 47633 47633 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold31 SAMTools SNP 50736 50736 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 50747 50747 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 51374 51374 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold31 SAMTools SNP 51825 51825 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 88017 88017 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold31 SAMTools SNP 94007 94007 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold31 SAMTools SNP 95890 95890 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold31 SAMTools SNP 98072 98072 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D46%3BFQ%3D81.7%3BPV4%3D0.43%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C109:99 scaffold31 SAMTools SNP 98503 98503 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C2%3BMQ%3D48%3BFQ%3D113%3BPV4%3D1%2C8.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold31 SAMTools SNP 146153 146153 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold31 SAMTools SNP 147684 147684 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold31 SAMTools SNP 148241 148241 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 148908 148908 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold31 SAMTools SNP 149557 149557 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 149565 149565 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 150552 150552 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 150852 150852 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 153093 153093 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold31 SAMTools SNP 153172 153172 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold31 SAMTools SNP 154030 154030 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C3%3BMQ%3D45%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C42:45 scaffold31 SAMTools SNP 154047 154047 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D41%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C136:73 scaffold31 SAMTools SNP 154794 154794 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.44%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold31 SAMTools SNP 154905 154905 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold31 SAMTools SNP 154946 154946 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold31 SAMTools SNP 154947 154947 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C8.5e-05%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold31 SAMTools SNP 154969 154969 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C136:77 scaffold31 SAMTools SNP 155800 155800 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold31 SAMTools SNP 156170 156170 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 156968 156968 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 157745 157745 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold31 SAMTools SNP 158166 158166 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold31 SAMTools SNP 158397 158397 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold31 SAMTools SNP 158447 158447 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold31 SAMTools SNP 158478 158478 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 158869 158869 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.21%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold31 SAMTools SNP 158964 158964 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C143:99 scaffold31 SAMTools SNP 159357 159357 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 200535 200535 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold31 SAMTools SNP 200914 200914 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold31 SAMTools SNP 203086 203086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C0.087%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold31 SAMTools SNP 203113 203113 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold31 SAMTools SNP 205677 205677 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.6e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C79:61 scaffold31 SAMTools SNP 206508 206508 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold31 SAMTools SNP 278884 278884 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C10%2C1%3BMQ%3D44%3BFQ%3D174%3BPV4%3D0.35%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C225:99 scaffold31 SAMTools SNP 280276 280276 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold31 SAMTools SNP 290834 290834 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold31 SAMTools SNP 319637 319637 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold311 SAMTools SNP 13208 13208 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold311 SAMTools SNP 58049 58049 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold311 SAMTools SNP 80431 80431 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold311 SAMTools SNP 80446 80446 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold311 SAMTools SNP 84704 84704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold311 SAMTools SNP 84746 84746 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold311 SAMTools SNP 85010 85010 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold311 SAMTools SNP 85094 85094 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold311 SAMTools SNP 85149 85149 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold311 SAMTools SNP 86238 86238 86.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C15%2C0:27 scaffold311 SAMTools SNP 86467 86467 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.078%2C2.7e-19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold311 SAMTools SNP 86698 86698 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C36%2C0:69 scaffold311 SAMTools SNP 86717 86717 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.074%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold311 SAMTools SNP 87317 87317 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C15%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold311 SAMTools SNP 87822 87822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C12%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold311 SAMTools SNP 88515 88515 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold311 SAMTools SNP 89381 89381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold311 SAMTools SNP 89480 89480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold311 SAMTools SNP 89499 89499 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold311 SAMTools SNP 90228 90228 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold311 SAMTools SNP 90276 90276 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold311 SAMTools SNP 90285 90285 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold311 SAMTools SNP 90671 90671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold311 SAMTools SNP 90858 90858 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C191:99 scaffold311 SAMTools SNP 90906 90906 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.3%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold311 SAMTools SNP 91620 91620 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C9%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold311 SAMTools SNP 93458 93458 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold313 SAMTools SNP 8309 8309 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 8363 8363 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold313 SAMTools SNP 16048 16048 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 16066 16066 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 47596 47596 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 47614 47614 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 106722 106722 11.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold313 SAMTools SNP 110758 110758 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 111053 111053 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C33%2C0:63 scaffold313 SAMTools SNP 112776 112776 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold313 SAMTools SNP 112807 112807 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold313 SAMTools SNP 140484 140484 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C24%2C0:45 scaffold313 SAMTools SNP 141035 141035 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.57%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold313 SAMTools SNP 141068 141068 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold313 SAMTools SNP 142338 142338 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold313 SAMTools SNP 142415 142415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C32%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold313 SAMTools SNP 143522 143522 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold313 SAMTools SNP 144946 144946 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C18%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C135%2C0:99 scaffold313 SAMTools SNP 145044 145044 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C99%2C0:99 scaffold313 SAMTools SNP 145136 145136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold313 SAMTools SNP 145373 145373 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C84%2C0:99 scaffold313 SAMTools SNP 145545 145545 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C108%2C0:99 scaffold313 SAMTools SNP 145643 145643 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 145651 145651 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 146590 146590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold313 SAMTools SNP 146596 146596 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold313 SAMTools SNP 146643 146643 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.22%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold313 SAMTools SNP 147167 147167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold313 SAMTools SNP 147680 147680 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 148345 148345 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 155739 155739 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold313 SAMTools SNP 155766 155766 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold313 SAMTools SNP 155782 155782 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold313 SAMTools SNP 159342 159342 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold313 SAMTools SNP 161613 161613 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 163112 163112 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold313 SAMTools SNP 163259 163259 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold313 SAMTools SNP 163390 163390 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 163415 163415 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 173053 173053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 173722 173722 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold313 SAMTools SNP 173758 173758 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold313 SAMTools SNP 174147 174147 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold313 SAMTools SNP 174180 174180 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.045%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 174213 174213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 174628 174628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 175075 175075 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.11%2C3.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold313 SAMTools SNP 175093 175093 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C21%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.019%2C1.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold313 SAMTools SNP 175685 175685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold313 SAMTools SNP 176733 176733 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold313 SAMTools SNP 176754 176754 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold313 SAMTools SNP 176817 176817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 176832 176832 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C9%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold313 SAMTools SNP 177778 177778 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C21%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 179545 179545 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C223:99 scaffold313 SAMTools SNP 179708 179708 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 182245 182245 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.69%2C0.26%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold313 SAMTools SNP 182249 182249 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold313 SAMTools SNP 182315 182315 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.23%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 183463 183463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C13%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold313 SAMTools SNP 186050 186050 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 186166 186166 103 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C22%2C5%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.12%2C2.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold313 SAMTools SNP 186848 186848 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C12%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C154%2C0:99 scaffold313 SAMTools SNP 186892 186892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold313 SAMTools SNP 187076 187076 140 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C13%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C105%2C0:99 scaffold313 SAMTools SNP 187166 187166 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold313 SAMTools SNP 187256 187256 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold313 SAMTools SNP 188192 188192 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C42%2C0:81 scaffold313 SAMTools SNP 201854 201854 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.54%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C230:99 scaffold313 SAMTools SNP 203651 203651 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 204101 204101 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D63.9%3BPV4%3D0.003%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C109:94 scaffold313 SAMTools SNP 204671 204671 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold313 SAMTools SNP 204682 204682 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold313 SAMTools SNP 204741 204741 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold313 SAMTools SNP 204808 204808 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold313 SAMTools SNP 205434 205434 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold313 SAMTools SNP 206061 206061 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold313 SAMTools SNP 206685 206685 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.8e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold313 SAMTools SNP 206715 206715 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold313 SAMTools SNP 206886 206886 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.33%2C0.32%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold313 SAMTools SNP 207009 207009 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold313 SAMTools SNP 207031 207031 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold313 SAMTools SNP 207959 207959 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 208269 208269 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C200:66 scaffold313 SAMTools SNP 208327 208327 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold313 SAMTools SNP 208964 208964 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold313 SAMTools SNP 208987 208987 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C107:99 scaffold313 SAMTools SNP 209062 209062 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold313 SAMTools SNP 209285 209285 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C78:43 scaffold313 SAMTools SNP 209314 209314 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold313 SAMTools SNP 209401 209401 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold313 SAMTools SNP 213094 213094 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold313 SAMTools SNP 221157 221157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold313 SAMTools SNP 221214 221214 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.00085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C167:99 scaffold313 SAMTools SNP 222306 222306 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 222601 222601 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.61%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold313 SAMTools SNP 222637 222637 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold313 SAMTools SNP 222876 222876 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold313 SAMTools SNP 222887 222887 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold313 SAMTools SNP 222907 222907 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold313 SAMTools SNP 224013 224013 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold313 SAMTools SNP 224623 224623 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.7e-05%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 226427 226427 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold313 SAMTools SNP 227452 227452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C5%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold313 SAMTools SNP 227733 227733 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 229237 229237 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 229263 229263 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 230481 230481 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 232307 232307 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C23%2C1%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.08%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C200%2C203:6 scaffold313 SAMTools SNP 232708 232708 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0071%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold313 SAMTools SNP 232752 232752 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold313 SAMTools SNP 232759 232759 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.39%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold313 SAMTools SNP 233828 233828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 234083 234083 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold313 SAMTools SNP 234119 234119 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold313 SAMTools SNP 234452 234452 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold313 SAMTools SNP 234688 234688 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold313 SAMTools SNP 235005 235005 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold313 SAMTools SNP 235400 235400 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 235439 235439 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold313 SAMTools SNP 235445 235445 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 235464 235464 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold313 SAMTools SNP 235925 235925 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold313 SAMTools SNP 235934 235934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 236375 236375 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C120%2C0:99 scaffold313 SAMTools SNP 236773 236773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C44%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold313 SAMTools SNP 237156 237156 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.14%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold313 SAMTools SNP 237618 237618 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C23%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.52%2C0.41%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold313 SAMTools SNP 240309 240309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C0%2C116%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C0.44%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 240819 240819 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C63%2C0%2C34%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.3%2C0.12%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold313 SAMTools SNP 240862 240862 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 243072 243072 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C141%2C0:99 scaffold313 SAMTools SNP 247516 247516 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C7.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold313 SAMTools SNP 247534 247534 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C51%2C0:99 scaffold313 SAMTools SNP 247822 247822 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 247838 247838 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C217:56 scaffold313 SAMTools SNP 248745 248745 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C7.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C243:99 scaffold313 SAMTools SNP 257356 257356 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold313 SAMTools SNP 258053 258053 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.3%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C236:91 scaffold313 SAMTools SNP 258084 258084 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.081%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C251:99 scaffold313 SAMTools SNP 258094 258094 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.33%2C4.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold313 SAMTools SNP 258171 258171 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 259291 259291 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.57%3BPV4%3D1%2C4.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C26:29 scaffold313 SAMTools SNP 287075 287075 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C213:48 scaffold313 SAMTools SNP 287125 287125 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C119%2C25%3BMQ%3D50%3BFQ%3D-273%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C246%2C0:99 scaffold313 SAMTools SNP 287494 287494 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 288567 288567 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C86%2C19%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 288626 288626 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C15%2C9%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold313 SAMTools SNP 288824 288824 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C15%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold313 SAMTools SNP 288929 288929 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold313 SAMTools SNP 288938 288938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C65%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold313 SAMTools SNP 288995 288995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 289009 289009 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 289248 289248 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0037%2C0.00059%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold313 SAMTools SNP 289276 289276 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.054%2C9.2e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold313 SAMTools SNP 289557 289557 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C7%2C26%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.35%2C0.36%2C1%2C3.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold313 SAMTools SNP 290021 290021 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold313 SAMTools SNP 290555 290555 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C10%2C55%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 291455 291455 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C202:99 scaffold313 SAMTools SNP 291488 291488 31.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold313 SAMTools SNP 291917 291917 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 292335 292335 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold313 SAMTools SNP 292359 292359 152 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C241:99 scaffold313 SAMTools SNP 304378 304378 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold313 SAMTools SNP 305611 305611 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold313 SAMTools SNP 305877 305877 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 305889 305889 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 306534 306534 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold313 SAMTools SNP 306704 306704 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold313 SAMTools SNP 309167 309167 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 310468 310468 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold313 SAMTools SNP 310934 310934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold313 SAMTools SNP 311099 311099 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold313 SAMTools SNP 312417 312417 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold313 SAMTools SNP 312947 312947 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold313 SAMTools SNP 312968 312968 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 313658 313658 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold313 SAMTools SNP 313679 313679 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.15%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C127:56 scaffold313 SAMTools SNP 313721 313721 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold313 SAMTools SNP 313778 313778 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold313 SAMTools SNP 313790 313790 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold313 SAMTools SNP 314681 314681 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 314759 314759 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold313 SAMTools SNP 318287 318287 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold313 SAMTools SNP 320455 320455 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C30%2C0:57 scaffold313 SAMTools SNP 321498 321498 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold313 SAMTools SNP 323256 323256 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 323259 323259 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 323488 323488 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold313 SAMTools SNP 323798 323798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 323807 323807 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 324983 324983 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C9%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.28%2C4.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold313 SAMTools SNP 324995 324995 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C21%2C2%2C11%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.54%2C7.5e-35%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold313 SAMTools SNP 325250 325250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C14%2C8%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.11%2C1.9e-26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold313 SAMTools SNP 325352 325352 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.48%2C8.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C231:96 scaffold313 SAMTools SNP 325436 325436 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C6.6e-17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C56:43 scaffold313 SAMTools SNP 325727 325727 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C1.1e-07%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C136:43 scaffold313 SAMTools SNP 326467 326467 63.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold313 SAMTools SNP 327067 327067 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold313 SAMTools SNP 327103 327103 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C8.9e-10%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C132:42 scaffold313 SAMTools SNP 327373 327373 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold313 SAMTools SNP 328472 328472 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.48%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold313 SAMTools SNP 328564 328564 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C39%2C0:75 scaffold313 SAMTools SNP 328714 328714 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold313 SAMTools SNP 341412 341412 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold313 SAMTools SNP 361947 361947 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold313 SAMTools SNP 382001 382001 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 382019 382019 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 384273 384273 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 388436 388436 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold313 SAMTools SNP 388467 388467 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 389125 389125 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 389317 389317 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold313 SAMTools SNP 389796 389796 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold313 SAMTools SNP 396565 396565 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 396718 396718 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold313 SAMTools SNP 397255 397255 73.3 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0%2C98%2C0%2C95:27 scaffold313 SAMTools SNP 398338 398338 46.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold313 SAMTools SNP 398560 398560 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 400819 400819 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C32%2C6%3BMQ%3D49%3BFQ%3D58%3BPV4%3D1%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold313 SAMTools SNP 402607 402607 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C14%2C51%2C5%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.78%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold313 SAMTools SNP 403467 403467 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C66%2C1%2C9%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold313 SAMTools SNP 409731 409731 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C191:40 scaffold313 SAMTools SNP 410173 410173 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C10%2C118%3BMQ%3D50%3BFQ%3D-273%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C246%2C0:99 scaffold313 SAMTools SNP 410269 410269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 410302 410302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C101%2C106%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 411478 411478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D804%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C657%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 414414 414414 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C283%2C30%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 415460 415460 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C5%3BMQ%3D34%3BFQ%3D13.2%3BPV4%3D1%2C2.5e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold313 SAMTools SNP 416792 416792 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold313 SAMTools SNP 417300 417300 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 420250 420250 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold313 SAMTools SNP 420256 420256 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold313 SAMTools SNP 420257 420257 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 421473 421473 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold313 SAMTools SNP 422153 422153 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D15%2C4%2C268%2C33%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 422682 422682 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C149%2C0%2C124%3BMQ%3D29%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C13%2C154:99 scaffold313 SAMTools SNP 425717 425717 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold313 SAMTools SNP 425735 425735 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 425741 425741 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 425957 425957 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold313 SAMTools SNP 426308 426308 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold313 SAMTools SNP 426334 426334 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold313 SAMTools SNP 426350 426350 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold313 SAMTools SNP 426379 426379 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 426467 426467 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold313 SAMTools SNP 426479 426479 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold313 SAMTools SNP 426704 426704 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold313 SAMTools SNP 426867 426867 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C8%2C0%3BMQ%3D35%3BFQ%3D-40%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C13%2C0:23 scaffold313 SAMTools SNP 426882 426882 86.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C18%2C0:33 scaffold313 SAMTools SNP 426930 426930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold313 SAMTools SNP 428263 428263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold313 SAMTools SNP 429179 429179 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold313 SAMTools SNP 429191 429191 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D46%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C174:99 scaffold313 SAMTools SNP 429459 429459 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D42%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C78:81 scaffold313 SAMTools SNP 430900 430900 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold313 SAMTools SNP 431456 431456 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold313 SAMTools SNP 431913 431913 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold313 SAMTools SNP 432045 432045 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C19%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.65%2C1.1e-42%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold313 SAMTools SNP 432417 432417 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C248:99 scaffold313 SAMTools SNP 432438 432438 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold313 SAMTools SNP 433268 433268 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.2%2C8.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold313 SAMTools SNP 433509 433509 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold313 SAMTools SNP 441794 441794 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0081%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold313 SAMTools SNP 442434 442434 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 442842 442842 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold313 SAMTools SNP 443218 443218 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold313 SAMTools SNP 443365 443365 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold313 SAMTools SNP 443989 443989 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C215:99 scaffold313 SAMTools SNP 445271 445271 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold313 SAMTools SNP 445300 445300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold313 SAMTools SNP 445611 445611 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C3.2e-15%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold313 SAMTools SNP 445887 445887 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.00058%2C3.1e-16%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C169:82 scaffold313 SAMTools SNP 446837 446837 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold313 SAMTools SNP 446838 446838 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.4%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold313 SAMTools SNP 457141 457141 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C111%2C0:99 scaffold313 SAMTools SNP 459743 459743 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C3%2C66%2C12%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.095%2C1.1e-98%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold313 SAMTools SNP 469433 469433 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 469776 469776 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 469812 469812 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 472302 472302 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold313 SAMTools SNP 477116 477116 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold313 SAMTools SNP 477144 477144 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold313 SAMTools SNP 478124 478124 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 478129 478129 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold313 SAMTools SNP 478245 478245 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold313 SAMTools SNP 480192 480192 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C0.025%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold313 SAMTools SNP 481138 481138 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 482012 482012 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C60%2C0:96 scaffold313 SAMTools SNP 493603 493603 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C82%2C24%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C7.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 495905 495905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C143%2C4%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 496559 496559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C20%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold313 SAMTools SNP 496981 496981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 502005 502005 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 502030 502030 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold313 SAMTools SNP 502476 502476 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold313 SAMTools SNP 502555 502555 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 502875 502875 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.0014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold313 SAMTools SNP 503128 503128 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold313 SAMTools SNP 503860 503860 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C19%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.082%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold313 SAMTools SNP 503872 503872 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.16%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold313 SAMTools SNP 504817 504817 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold313 SAMTools SNP 505549 505549 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold313 SAMTools SNP 506049 506049 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.44%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold313 SAMTools SNP 506919 506919 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 506944 506944 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C9.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold313 SAMTools SNP 507236 507236 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.5%2C0.17%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold313 SAMTools SNP 510477 510477 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 510637 510637 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 510685 510685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C4.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 510715 510715 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C33%2C6%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.001%2C1%2C1%2C3.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold313 SAMTools SNP 511065 511065 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 511089 511089 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold313 SAMTools SNP 515756 515756 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C132:59 scaffold313 SAMTools SNP 518968 518968 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0063%2C3.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold313 SAMTools SNP 519719 519719 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 519749 519749 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 519905 519905 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold313 SAMTools SNP 522717 522717 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold313 SAMTools SNP 524059 524059 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold313 SAMTools SNP 525156 525156 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 526622 526622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold313 SAMTools SNP 526678 526678 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold313 SAMTools SNP 528702 528702 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 528883 528883 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold313 SAMTools SNP 529592 529592 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold313 SAMTools SNP 530191 530191 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C121:63 scaffold313 SAMTools SNP 530368 530368 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold313 SAMTools SNP 530380 530380 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 530419 530419 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.049%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 530990 530990 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold313 SAMTools SNP 532437 532437 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C151:31 scaffold313 SAMTools SNP 532537 532537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 535961 535961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold313 SAMTools SNP 536081 536081 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C178:99 scaffold313 SAMTools SNP 536928 536928 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 537093 537093 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 537538 537538 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold313 SAMTools SNP 537562 537562 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold313 SAMTools SNP 537598 537598 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C237:99 scaffold313 SAMTools SNP 543321 543321 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold313 SAMTools SNP 543336 543336 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold313 SAMTools SNP 543338 543338 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold313 SAMTools SNP 543767 543767 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 552670 552670 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C118:99 scaffold313 SAMTools SNP 554743 554743 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.045%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold313 SAMTools SNP 555083 555083 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C21%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.38%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C242:99 scaffold313 SAMTools SNP 557679 557679 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 558306 558306 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold313 SAMTools SNP 558317 558317 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold313 SAMTools SNP 558362 558362 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 621041 621041 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 621774 621774 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold313 SAMTools SNP 646683 646683 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 646933 646933 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 649219 649219 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold313 SAMTools SNP 650962 650962 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold313 SAMTools SNP 662786 662786 48.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold313 SAMTools SNP 667703 667703 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold313 SAMTools SNP 669058 669058 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.015%2C0.28%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold313 SAMTools SNP 669616 669616 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D35.6%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C64:66 scaffold313 SAMTools SNP 669619 669619 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.46%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C98:41 scaffold313 SAMTools SNP 669728 669728 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C232:71 scaffold313 SAMTools SNP 670554 670554 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 670563 670563 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 670656 670656 97.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C4%2C0%3BMQ%3D29%3BFQ%3D-31%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C4%2C0:7 scaffold313 SAMTools SNP 675680 675680 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold313 SAMTools SNP 675821 675821 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C1%2C29%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.19%2C4.5e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold313 SAMTools SNP 679060 679060 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold313 SAMTools SNP 680056 680056 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.4%2C0.49%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold313 SAMTools SNP 680078 680078 8.66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D-6.26%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C22:26 scaffold313 SAMTools SNP 680257 680257 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.44%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C240:61 scaffold313 SAMTools SNP 680261 680261 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D47%3BFQ%3D56%3BPV4%3D0.17%2C0.041%2C0.15%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C193:86 scaffold313 SAMTools SNP 681561 681561 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 681925 681925 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 711681 711681 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold313 SAMTools SNP 711698 711698 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold313 SAMTools SNP 713655 713655 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold313 SAMTools SNP 734767 734767 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold313 SAMTools SNP 734770 734770 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold313 SAMTools SNP 735133 735133 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 735532 735532 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 736240 736240 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C207:60 scaffold313 SAMTools SNP 736312 736312 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.34%2C9.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold313 SAMTools SNP 736603 736603 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold313 SAMTools SNP 737117 737117 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 737135 737135 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 743668 743668 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold313 SAMTools SNP 743822 743822 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold313 SAMTools SNP 744166 744166 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold313 SAMTools SNP 744249 744249 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C36%2C0:69 scaffold313 SAMTools SNP 744666 744666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 746741 746741 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 746770 746770 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 746961 746961 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold313 SAMTools SNP 747084 747084 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.3e-28%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C229:51 scaffold313 SAMTools SNP 747438 747438 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C239:99 scaffold313 SAMTools SNP 747454 747454 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold313 SAMTools SNP 747675 747675 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C18%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.07%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C208:99 scaffold313 SAMTools SNP 748182 748182 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C4.7e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold313 SAMTools SNP 748432 748432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold313 SAMTools SNP 748464 748464 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold313 SAMTools SNP 749562 749562 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C200:99 scaffold313 SAMTools SNP 749583 749583 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold313 SAMTools SNP 749595 749595 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold313 SAMTools SNP 750051 750051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 750141 750141 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.071%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold313 SAMTools SNP 751817 751817 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold313 SAMTools SNP 752054 752054 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold313 SAMTools SNP 752467 752467 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold313 SAMTools SNP 752485 752485 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold313 SAMTools SNP 752637 752637 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D47%3BFQ%3D94%3BPV4%3D1%2C0.18%2C0.18%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C154:99 scaffold313 SAMTools SNP 752852 752852 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold313 SAMTools SNP 752965 752965 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D47%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold313 SAMTools SNP 753670 753670 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C8%2C1%3BMQ%3D45%3BFQ%3D169%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C234:99 scaffold313 SAMTools SNP 753769 753769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D46%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold313 SAMTools SNP 753779 753779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D46%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold313 SAMTools SNP 754142 754142 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 754764 754764 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C44%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold313 SAMTools SNP 754821 754821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold313 SAMTools SNP 755359 755359 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.37%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold313 SAMTools SNP 755434 755434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 758755 758755 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold313 SAMTools SNP 760089 760089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold313 SAMTools SNP 760119 760119 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.17%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold313 SAMTools SNP 760126 760126 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.17%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold313 SAMTools SNP 761463 761463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold313 SAMTools SNP 761511 761511 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.31%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold313 SAMTools SNP 762035 762035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold313 SAMTools SNP 762041 762041 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C3%3BMQ%3D49%3BFQ%3D49%3BPV4%3D0.044%2C0.16%2C0.029%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold313 SAMTools SNP 762746 762746 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold313 SAMTools SNP 764054 764054 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C15%3BMQ%3D44%3BFQ%3D49%3BPV4%3D1%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C76:79 scaffold313 SAMTools SNP 764060 764060 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D44%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C209:79 scaffold313 SAMTools SNP 764111 764111 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C5%3BMQ%3D49%3BFQ%3D152%3BPV4%3D0.52%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C234:99 scaffold313 SAMTools SNP 765182 765182 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C3%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00032%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 765203 765203 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C15%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00083%2C0.14%2C0.071%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 765209 765209 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 766317 766317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D46%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 766349 766349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold313 SAMTools SNP 766379 766379 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C27%2C0:51 scaffold313 SAMTools SNP 767677 767677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold313 SAMTools SNP 767697 767697 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold313 SAMTools SNP 770443 770443 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 770472 770472 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 771144 771144 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold313 SAMTools SNP 771171 771171 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold313 SAMTools SNP 771704 771704 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold313 SAMTools SNP 771736 771736 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 772499 772499 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold313 SAMTools SNP 772532 772532 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 773771 773771 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold313 SAMTools SNP 812558 812558 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold313 SAMTools SNP 812687 812687 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold313 SAMTools SNP 818225 818225 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 823915 823915 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold313 SAMTools SNP 824089 824089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold313 SAMTools SNP 824320 824320 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold313 SAMTools SNP 824734 824734 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C117%2C0:99 scaffold313 SAMTools SNP 825272 825272 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C45%2C0:87 scaffold313 SAMTools SNP 826498 826498 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold313 SAMTools SNP 834010 834010 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.075%2C8.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold313 SAMTools SNP 834068 834068 21.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold313 SAMTools SNP 834196 834196 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.25%2C1.2e-27%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold313 SAMTools SNP 835413 835413 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold313 SAMTools SNP 835425 835425 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.077%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold313 SAMTools SNP 835467 835467 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold313 SAMTools SNP 836006 836006 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold313 SAMTools SNP 836185 836185 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold313 SAMTools SNP 836769 836769 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold313 SAMTools SNP 837178 837178 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold313 SAMTools SNP 846540 846540 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold313 SAMTools SNP 862477 862477 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold313 SAMTools SNP 862532 862532 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold313 SAMTools SNP 862749 862749 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 942661 942661 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 942663 942663 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 944363 944363 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 944560 944560 57.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold313 SAMTools SNP 953902 953902 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.021%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C138:70 scaffold313 SAMTools SNP 954156 954156 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 958817 958817 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold313 SAMTools SNP 959776 959776 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold313 SAMTools SNP 959810 959810 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 960557 960557 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C22%2C7%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.52%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold313 SAMTools SNP 960617 960617 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C60%2C0%2C71%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.22%2C2e-86%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold313 SAMTools SNP 960830 960830 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C225:99 scaffold313 SAMTools SNP 960836 960836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 967571 967571 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold313 SAMTools SNP 970313 970313 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.048%2C0.0038%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C154:37 scaffold313 SAMTools SNP 970392 970392 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold313 SAMTools SNP 972555 972555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C18%3BMQ%3D31%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold313 SAMTools SNP 983821 983821 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C223:99 scaffold313 SAMTools SNP 984715 984715 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold313 SAMTools SNP 984843 984843 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 985626 985626 153 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C216:99 scaffold313 SAMTools SNP 986210 986210 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.32%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold313 SAMTools SNP 986225 986225 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold313 SAMTools SNP 986553 986553 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C31%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 986585 986585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 987235 987235 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 987366 987366 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold313 SAMTools SNP 997307 997307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1041672 1041672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1043045 1043045 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C51%2C0:99 scaffold313 SAMTools SNP 1043083 1043083 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C35:38 scaffold313 SAMTools SNP 1045568 1045568 57.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D4%2C7%2C16%2C4%3BMQ%3D20%3BFQ%3D-22%3BPV4%3D0.023%2C5.9e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C5:8 scaffold313 SAMTools SNP 1046234 1046234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1046261 1046261 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D45%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C179:99 scaffold313 SAMTools SNP 1047311 1047311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C14%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold313 SAMTools SNP 1049431 1049431 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.3%2C0.014%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold313 SAMTools SNP 1049482 1049482 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1050627 1050627 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1050639 1050639 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C11%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.22%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold313 SAMTools SNP 1053165 1053165 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold313 SAMTools SNP 1053214 1053214 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.00089%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C222:99 scaffold313 SAMTools SNP 1057353 1057353 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1057787 1057787 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold313 SAMTools SNP 1057841 1057841 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.08%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold313 SAMTools SNP 1057913 1057913 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold313 SAMTools SNP 1057971 1057971 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold313 SAMTools SNP 1061674 1061674 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold313 SAMTools SNP 1062994 1062994 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1065302 1065302 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C10%2C61%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C0.0035%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1069881 1069881 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold313 SAMTools SNP 1072814 1072814 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C45%2C0:87 scaffold313 SAMTools SNP 1072981 1072981 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 1076420 1076420 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C209:44 scaffold313 SAMTools SNP 1076456 1076456 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C16%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold313 SAMTools SNP 1077957 1077957 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D48%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C72%2C0:99 scaffold313 SAMTools SNP 1081965 1081965 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold313 SAMTools SNP 1081981 1081981 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1082026 1082026 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold313 SAMTools SNP 1084012 1084012 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1084029 1084029 23.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold313 SAMTools SNP 1084116 1084116 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold313 SAMTools SNP 1084384 1084384 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold313 SAMTools SNP 1085264 1085264 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold313 SAMTools SNP 1085306 1085306 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold313 SAMTools SNP 1085336 1085336 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold313 SAMTools SNP 1086740 1086740 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold313 SAMTools SNP 1101238 1101238 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold313 SAMTools SNP 1101946 1101946 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold313 SAMTools SNP 1106093 1106093 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 1109260 1109260 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold313 SAMTools SNP 1109289 1109289 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold313 SAMTools SNP 1109346 1109346 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold313 SAMTools SNP 1110180 1110180 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.14%2C1e-05%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold313 SAMTools SNP 1110219 1110219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold313 SAMTools SNP 1110222 1110222 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1110630 1110630 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1.5e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1110794 1110794 13.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold313 SAMTools SNP 1111780 1111780 8.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold313 SAMTools SNP 1111933 1111933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1111954 1111954 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1119419 1119419 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1121377 1121377 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold313 SAMTools SNP 1122544 1122544 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold313 SAMTools SNP 1122550 1122550 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold313 SAMTools SNP 1122733 1122733 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1123150 1123150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1123204 1123204 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold313 SAMTools SNP 1124934 1124934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 1125000 1125000 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold313 SAMTools SNP 1125178 1125178 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold313 SAMTools SNP 1125229 1125229 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold313 SAMTools SNP 1125671 1125671 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C2.2e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C233:80 scaffold313 SAMTools SNP 1126117 1126117 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C67%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1126147 1126147 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C0%2C9%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold313 SAMTools SNP 1126174 1126174 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C8%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.067%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold313 SAMTools SNP 1126177 1126177 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.067%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold313 SAMTools SNP 1126187 1126187 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold313 SAMTools SNP 1127405 1127405 62.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold313 SAMTools SNP 1129981 1129981 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1130012 1130012 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1130028 1130028 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold313 SAMTools SNP 1130280 1130280 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.024%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C213:99 scaffold313 SAMTools SNP 1130822 1130822 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C26%2C0%2C16%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0027%2C5.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold313 SAMTools SNP 1130942 1130942 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.36%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold313 SAMTools SNP 1130957 1130957 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold313 SAMTools SNP 1131365 1131365 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold313 SAMTools SNP 1131371 1131371 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold313 SAMTools SNP 1131380 1131380 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold313 SAMTools SNP 1136412 1136412 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C15%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.62%2C0.37%2C0.097%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1136424 1136424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C15%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.6%2C1%2C0.083%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1136499 1136499 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C24%2C0:45 scaffold313 SAMTools SNP 1137526 1137526 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 1137709 1137709 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold313 SAMTools SNP 1138568 1138568 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold313 SAMTools SNP 1141611 1141611 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold313 SAMTools SNP 1144967 1144967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold313 SAMTools SNP 1145039 1145039 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold313 SAMTools SNP 1145066 1145066 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1145310 1145310 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.094%2C0.0015%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold313 SAMTools SNP 1145318 1145318 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.012%2C0.00023%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold313 SAMTools SNP 1145895 1145895 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C6%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold313 SAMTools SNP 1146583 1146583 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0058%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold313 SAMTools SNP 1146622 1146622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C38%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold313 SAMTools SNP 1147200 1147200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold313 SAMTools SNP 1148158 1148158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C34%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold313 SAMTools SNP 1148539 1148539 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold313 SAMTools SNP 1148551 1148551 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C241:99 scaffold313 SAMTools SNP 1148585 1148585 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold313 SAMTools SNP 1148625 1148625 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C15%2C0:27 scaffold313 SAMTools SNP 1150517 1150517 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 1150523 1150523 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 1150792 1150792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold313 SAMTools SNP 1150810 1150810 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold313 SAMTools SNP 1151206 1151206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C4%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0088%2C0.0025%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold313 SAMTools SNP 1151248 1151248 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C0%2C18%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1.2e-09%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold313 SAMTools SNP 1151275 1151275 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold313 SAMTools SNP 1151368 1151368 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D7.4e-07%2C1%2C1%2C7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C234:99 scaffold313 SAMTools SNP 1151546 1151546 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D8.1e-05%2C1%2C1%2C3.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold313 SAMTools SNP 1151570 1151570 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold313 SAMTools SNP 1151581 1151581 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C79:66 scaffold313 SAMTools SNP 1152305 1152305 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 1152341 1152341 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 1152719 1152719 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold313 SAMTools SNP 1152963 1152963 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 1153263 1153263 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 1153380 1153380 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C30%2C0:57 scaffold313 SAMTools SNP 1153694 1153694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold313 SAMTools SNP 1153733 1153733 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold313 SAMTools SNP 1153751 1153751 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold313 SAMTools SNP 1154012 1154012 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C42%2C0:81 scaffold313 SAMTools SNP 1154045 1154045 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1154129 1154129 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold313 SAMTools SNP 1154427 1154427 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold313 SAMTools SNP 1154431 1154431 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold313 SAMTools SNP 1154432 1154432 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold313 SAMTools SNP 1155255 1155255 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1155673 1155673 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold313 SAMTools SNP 1156267 1156267 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold313 SAMTools SNP 1156268 1156268 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold313 SAMTools SNP 1156271 1156271 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0058%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 1156316 1156316 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.6%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold313 SAMTools SNP 1156382 1156382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.28%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold313 SAMTools SNP 1156666 1156666 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1156702 1156702 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.19%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C248:99 scaffold313 SAMTools SNP 1157062 1157062 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C22%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.23%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold313 SAMTools SNP 1157074 1157074 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold313 SAMTools SNP 1157122 1157122 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold313 SAMTools SNP 1157261 1157261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 1157296 1157296 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold313 SAMTools SNP 1157392 1157392 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold313 SAMTools SNP 1157556 1157556 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold313 SAMTools SNP 1157571 1157571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold313 SAMTools SNP 1158730 1158730 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C192:99 scaffold313 SAMTools SNP 1158750 1158750 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C215:71 scaffold313 SAMTools SNP 1158935 1158935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C13%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.64%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold313 SAMTools SNP 1159290 1159290 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C127:99 scaffold313 SAMTools SNP 1159291 1159291 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C238:99 scaffold313 SAMTools SNP 1159308 1159308 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold313 SAMTools SNP 1159437 1159437 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C9%2C0:16 scaffold313 SAMTools SNP 1159452 1159452 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold313 SAMTools SNP 1159461 1159461 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold313 SAMTools SNP 1159606 1159606 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold313 SAMTools SNP 1159617 1159617 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.16%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold313 SAMTools SNP 1159645 1159645 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold313 SAMTools SNP 1159983 1159983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold313 SAMTools SNP 1160103 1160103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold313 SAMTools SNP 1160124 1160124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold313 SAMTools SNP 1160508 1160508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C26%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold313 SAMTools SNP 1160972 1160972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C10%2C13%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.06%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold313 SAMTools SNP 1161281 1161281 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold313 SAMTools SNP 1161332 1161332 58.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C17:20 scaffold313 SAMTools SNP 1161431 1161431 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1161885 1161885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1161948 1161948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold313 SAMTools SNP 1162147 1162147 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 1162198 1162198 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C20%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0092%2C5.7e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold313 SAMTools SNP 1162264 1162264 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.061%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C96:80 scaffold313 SAMTools SNP 1162342 1162342 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold313 SAMTools SNP 1162345 1162345 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold313 SAMTools SNP 1162714 1162714 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold313 SAMTools SNP 1162717 1162717 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold313 SAMTools SNP 1162749 1162749 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold313 SAMTools SNP 1162758 1162758 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold313 SAMTools SNP 1163162 1163162 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold313 SAMTools SNP 1163446 1163446 100 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.43%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C125%2C146%2C119%2C0%2C147:24 scaffold313 SAMTools SNP 1163557 1163557 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold313 SAMTools SNP 1163593 1163593 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold313 SAMTools SNP 1163963 1163963 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C7.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold313 SAMTools SNP 1164041 1164041 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C59%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1164350 1164350 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C27%2C9%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C3.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold313 SAMTools SNP 1164365 1164365 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C27%2C0%2C12%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00024%2C0.00036%2C1%2C5.4e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold313 SAMTools SNP 1164748 1164748 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C62%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-07%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1164769 1164769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C56%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold313 SAMTools SNP 1164793 1164793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold313 SAMTools SNP 1164927 1164927 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.16%2C0.46%2C1%2C1.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold313 SAMTools SNP 1164981 1164981 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold313 SAMTools SNP 1165454 1165454 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 1165457 1165457 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold313 SAMTools SNP 1165556 1165556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold313 SAMTools SNP 1165595 1165595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold313 SAMTools SNP 1166015 1166015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold313 SAMTools SNP 1166030 1166030 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.33%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold313 SAMTools SNP 1166084 1166084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1166362 1166362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold313 SAMTools SNP 1167160 1167160 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 1167369 1167369 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold313 SAMTools SNP 1167375 1167375 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 1167778 1167778 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C38:41 scaffold313 SAMTools SNP 1167793 1167793 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold313 SAMTools SNP 1169145 1169145 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C39%2C0:75 scaffold313 SAMTools SNP 1169238 1169238 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C54:63 scaffold313 SAMTools SNP 1170291 1170291 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold313 SAMTools SNP 1170342 1170342 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold313 SAMTools SNP 1170920 1170920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1170929 1170929 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1171007 1171007 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.03%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold313 SAMTools SNP 1171013 1171013 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C2%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold313 SAMTools SNP 1171022 1171022 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1171266 1171266 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C2%2C16%2C7%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.12%2C0.19%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C18:21 scaffold313 SAMTools SNP 1171290 1171290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold313 SAMTools SNP 1171342 1171342 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold313 SAMTools SNP 1171517 1171517 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D98%3BPV4%3D2.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C125:99 scaffold313 SAMTools SNP 1172368 1172368 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold313 SAMTools SNP 1173684 1173684 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C59%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold313 SAMTools SNP 1173741 1173741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold313 SAMTools SNP 1174209 1174209 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C25%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold313 SAMTools SNP 1175186 1175186 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold313 SAMTools SNP 1175342 1175342 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C27%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C247:63 scaffold313 SAMTools SNP 1175968 1175968 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold313 SAMTools SNP 1181157 1181157 25.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold313 SAMTools SNP 1186782 1186782 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold313 SAMTools SNP 1187034 1187034 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold313 SAMTools SNP 1191698 1191698 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.064%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C76:34 scaffold313 SAMTools SNP 1192277 1192277 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold314 SAMTools SNP 32054 32054 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold314 SAMTools SNP 32069 32069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold314 SAMTools SNP 32182 32182 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold314 SAMTools SNP 84483 84483 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold314 SAMTools SNP 105888 105888 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold314 SAMTools SNP 108999 108999 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D30%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C66%2C0:83 scaffold314 SAMTools SNP 109143 109143 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C30%3BMQ%3D39%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold314 SAMTools SNP 112346 112346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C7%2C17%3BMQ%3D40%3BFQ%3D72%3BPV4%3D0.71%2C2.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold314 SAMTools SNP 112445 112445 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C4%2C5%2C5%3BMQ%3D24%3BFQ%3D-32%3BPV4%3D1%2C4.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C5%2C0:9 scaffold314 SAMTools SNP 112627 112627 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C4%3BMQ%3D27%3BFQ%3D3.68%3BPV4%3D0.16%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C33:28 scaffold314 SAMTools SNP 112880 112880 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C20%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.15%2C1e-19%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C59:62 scaffold314 SAMTools SNP 130150 130150 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold314 SAMTools SNP 158524 158524 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold315 SAMTools SNP 9844 9844 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 21914 21914 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 21983 21983 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 39455 39455 30.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold315 SAMTools SNP 39552 39552 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 40395 40395 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 40417 40417 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold315 SAMTools SNP 40422 40422 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold315 SAMTools SNP 40654 40654 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 40665 40665 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 41405 41405 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 41505 41505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 41531 41531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 42449 42449 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 55877 55877 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold315 SAMTools SNP 56383 56383 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold315 SAMTools SNP 56408 56408 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C15%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold315 SAMTools SNP 56481 56481 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.43%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold315 SAMTools SNP 56532 56532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C40%2C34%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 57052 57052 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C0%2C39%3BMQ%3D50%3BFQ%3D90%3BPV4%3D2.1e-07%2C1.9e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold315 SAMTools SNP 58200 58200 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.34%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold315 SAMTools SNP 58229 58229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold315 SAMTools SNP 59018 59018 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D35%3BPV4%3D3.2e-07%2C4.9e-13%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C241:65 scaffold315 SAMTools SNP 59053 59053 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C67%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D7.1e-13%2C7.9e-102%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold315 SAMTools SNP 59137 59137 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.54%2C0.049%2C1%2C7.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold315 SAMTools SNP 60150 60150 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D30%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0092%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold315 SAMTools SNP 60152 60152 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold315 SAMTools SNP 60769 60769 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold315 SAMTools SNP 65097 65097 29.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold315 SAMTools SNP 65132 65132 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 66039 66039 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 66123 66123 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.067%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C184:46 scaffold315 SAMTools SNP 66153 66153 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 67417 67417 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold315 SAMTools SNP 67473 67473 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold315 SAMTools SNP 68332 68332 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C30%2C0:57 scaffold315 SAMTools SNP 69303 69303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold315 SAMTools SNP 69346 69346 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 71794 71794 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.1e-05%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C208:37 scaffold315 SAMTools SNP 73253 73253 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold315 SAMTools SNP 73757 73757 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold315 SAMTools SNP 74014 74014 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C37%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold315 SAMTools SNP 74881 74881 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C107%2C10%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.0089%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 74953 74953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 75463 75463 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 76336 76336 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C41%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold315 SAMTools SNP 76487 76487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 77671 77671 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 77712 77712 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 79273 79273 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C35%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 79288 79288 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 79626 79626 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.15%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold315 SAMTools SNP 79668 79668 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C33%2C25%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.26%2C8.2e-45%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold315 SAMTools SNP 79755 79755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C23%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 80833 80833 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C36%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 80977 80977 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 80982 80982 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C89%2C1%2C42%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0016%2C0.35%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold315 SAMTools SNP 83742 83742 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C11%2C34%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 84390 84390 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 95628 95628 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 96837 96837 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold315 SAMTools SNP 99184 99184 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C171:51 scaffold315 SAMTools SNP 99188 99188 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold315 SAMTools SNP 99227 99227 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 100805 100805 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold315 SAMTools SNP 100850 100850 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold315 SAMTools SNP 103244 103244 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold315 SAMTools SNP 103256 103256 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold315 SAMTools SNP 103292 103292 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold315 SAMTools SNP 103854 103854 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C0.46%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold315 SAMTools SNP 105824 105824 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold315 SAMTools SNP 105857 105857 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold315 SAMTools SNP 106593 106593 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold315 SAMTools SNP 106638 106638 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold315 SAMTools SNP 106644 106644 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 111676 111676 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold315 SAMTools SNP 118491 118491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold315 SAMTools SNP 118508 118508 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold315 SAMTools SNP 122575 122575 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold315 SAMTools SNP 122602 122602 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold315 SAMTools SNP 122740 122740 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold315 SAMTools SNP 122752 122752 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold315 SAMTools SNP 131475 131475 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold315 SAMTools SNP 131497 131497 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold315 SAMTools SNP 131922 131922 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C8%3BMQ%3D50%3BFQ%3D-62%3BPV4%3D0.35%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C0:67 scaffold315 SAMTools SNP 132359 132359 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C10%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.41%2C0.26%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold315 SAMTools SNP 132389 132389 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold315 SAMTools SNP 132428 132428 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.00087%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold315 SAMTools SNP 132434 132434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.054%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold315 SAMTools SNP 132476 132476 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.024%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold315 SAMTools SNP 132482 132482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0047%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold315 SAMTools SNP 132996 132996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold315 SAMTools SNP 133521 133521 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold315 SAMTools SNP 139867 139867 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold315 SAMTools SNP 141344 141344 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 141365 141365 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold315 SAMTools SNP 141385 141385 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.5%2C0.065%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C199:71 scaffold315 SAMTools SNP 142764 142764 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 142870 142870 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 150000 150000 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C70%2C1%2C29%3BMQ%3D50%3BFQ%3D50%3BPV4%3D3.1e-07%2C5.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold315 SAMTools SNP 150561 150561 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.048%2C0.011%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C160:55 scaffold315 SAMTools SNP 151425 151425 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C6%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold315 SAMTools SNP 153842 153842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold315 SAMTools SNP 154470 154470 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 154839 154839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 156426 156426 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 157133 157133 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold315 SAMTools SNP 157393 157393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 158145 158145 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C57%2C95%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1.9e-11%2C1%2C1%2C5.6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold315 SAMTools SNP 158398 158398 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold315 SAMTools SNP 158456 158456 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 165427 165427 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 166079 166079 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C37%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.00044%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 166086 166086 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C2%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.021%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 167612 167612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 167633 167633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C123%2C29%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 171952 171952 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.007%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C125:40 scaffold315 SAMTools SNP 172961 172961 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold315 SAMTools SNP 173765 173765 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D21.7%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C60:52 scaffold315 SAMTools SNP 173766 173766 101 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold315 SAMTools SNP 174185 174185 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C96%2C0%2C27%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold315 SAMTools SNP 174186 174186 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C96%2C0%2C27%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold315 SAMTools SNP 174596 174596 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 174804 174804 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 174822 174822 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold315 SAMTools SNP 174852 174852 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.19%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 175254 175254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C67%2C23%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 175662 175662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C76%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 175668 175668 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C8%2C15%2C9%3BMQ%3D50%3BFQ%3D148%3BPV4%3D6.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold315 SAMTools SNP 177557 177557 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C55%2C42%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 177602 177602 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C70%2C10%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 181384 181384 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold315 SAMTools SNP 186811 186811 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold315 SAMTools SNP 200597 200597 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C10%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.011%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold315 SAMTools SNP 201157 201157 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 201161 201161 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 201164 201164 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 201218 201218 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold315 SAMTools SNP 201251 201251 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold315 SAMTools SNP 203028 203028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C17%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.53%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold315 SAMTools SNP 203762 203762 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C1%2C17%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.32%2C4.5e-41%2C0.074%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C250:99 scaffold315 SAMTools SNP 207613 207613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold315 SAMTools SNP 209710 209710 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold315 SAMTools SNP 211882 211882 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D47%3BFQ%3D149%3BPV4%3D1%2C0.27%2C0.13%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C176:99 scaffold315 SAMTools SNP 211903 211903 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D47%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold315 SAMTools SNP 212428 212428 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 212441 212441 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold315 SAMTools SNP 212948 212948 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.15%2C0.00043%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold315 SAMTools SNP 212967 212967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold315 SAMTools SNP 213565 213565 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold315 SAMTools SNP 213593 213593 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.064%2C1.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold315 SAMTools SNP 213713 213713 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C245:77 scaffold315 SAMTools SNP 213797 213797 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C112:51 scaffold315 SAMTools SNP 214197 214197 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold315 SAMTools SNP 219060 219060 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C4%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.14%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold315 SAMTools SNP 228975 228975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 230405 230405 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold315 SAMTools SNP 230540 230540 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C169:33 scaffold315 SAMTools SNP 230790 230790 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C5.7e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C209:63 scaffold315 SAMTools SNP 230795 230795 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C120:52 scaffold315 SAMTools SNP 232218 232218 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C72%2C0:99 scaffold315 SAMTools SNP 236706 236706 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold315 SAMTools SNP 326103 326103 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold315 SAMTools SNP 327564 327564 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold315 SAMTools SNP 327643 327643 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 328888 328888 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold315 SAMTools SNP 331231 331231 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold315 SAMTools SNP 331479 331479 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.6e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C177:46 scaffold315 SAMTools SNP 331855 331855 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.03%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C41:44 scaffold315 SAMTools SNP 331902 331902 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D30.8%3BPV4%3D1%2C7.8e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C71:61 scaffold315 SAMTools SNP 332152 332152 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.33%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold315 SAMTools SNP 332218 332218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold315 SAMTools SNP 332615 332615 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold315 SAMTools SNP 335629 335629 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 337545 337545 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold315 SAMTools SNP 337607 337607 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold315 SAMTools SNP 337637 337637 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 338153 338153 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold315 SAMTools SNP 338279 338279 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold315 SAMTools SNP 339120 339120 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.041%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold315 SAMTools SNP 339977 339977 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C24%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.054%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold315 SAMTools SNP 360050 360050 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C8%2C15%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.27%2C7.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold315 SAMTools SNP 360311 360311 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold315 SAMTools SNP 360509 360509 157 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C111%2C0%2C183%2C88%2C180:99 scaffold315 SAMTools SNP 360681 360681 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C30%2C0:52 scaffold315 SAMTools SNP 360692 360692 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C8.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C245:99 scaffold315 SAMTools SNP 363605 363605 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C36%2C0:69 scaffold315 SAMTools SNP 372569 372569 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.21%2C0.24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C240:99 scaffold315 SAMTools SNP 381803 381803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 382213 382213 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold315 SAMTools SNP 382222 382222 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.59%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold315 SAMTools SNP 382255 382255 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C7%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C52:55 scaffold315 SAMTools SNP 382312 382312 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.4%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold315 SAMTools SNP 385503 385503 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold315 SAMTools SNP 385522 385522 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold315 SAMTools SNP 389422 389422 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold315 SAMTools SNP 389428 389428 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold315 SAMTools SNP 389660 389660 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.66%2C0.24%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold315 SAMTools SNP 393606 393606 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 395100 395100 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold315 SAMTools SNP 401154 401154 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold315 SAMTools SNP 401365 401365 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.058%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold315 SAMTools SNP 401377 401377 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 401395 401395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold315 SAMTools SNP 402054 402054 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C0.29%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold315 SAMTools SNP 402078 402078 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 402087 402087 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold315 SAMTools SNP 402108 402108 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold315 SAMTools SNP 402808 402808 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 403223 403223 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C15%2C0:27 scaffold315 SAMTools SNP 403286 403286 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold315 SAMTools SNP 403287 403287 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold315 SAMTools SNP 403767 403767 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.024%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold315 SAMTools SNP 403776 403776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold315 SAMTools SNP 403833 403833 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold315 SAMTools SNP 404423 404423 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.55%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold315 SAMTools SNP 404581 404581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold315 SAMTools SNP 404926 404926 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold315 SAMTools SNP 404974 404974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold315 SAMTools SNP 404989 404989 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold315 SAMTools SNP 405223 405223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 405238 405238 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 405328 405328 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C126%2C0:99 scaffold315 SAMTools SNP 405334 405334 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C41%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C129%2C0:99 scaffold315 SAMTools SNP 405403 405403 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C106:99 scaffold315 SAMTools SNP 405454 405454 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold315 SAMTools SNP 406350 406350 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold315 SAMTools SNP 406377 406377 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold315 SAMTools SNP 406428 406428 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 407151 407151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 407499 407499 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold315 SAMTools SNP 407957 407957 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold315 SAMTools SNP 408002 408002 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0035%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold315 SAMTools SNP 408130 408130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C28%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold315 SAMTools SNP 408316 408316 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C31%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold315 SAMTools SNP 408652 408652 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C54%2C37%3BMQ%3D50%3BFQ%3D125%3BPV4%3D4.5e-06%2C9.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold315 SAMTools SNP 408721 408721 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.11%2C2.5e-13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold315 SAMTools SNP 408850 408850 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 409982 409982 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 409989 409989 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 410045 410045 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold315 SAMTools SNP 410578 410578 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold315 SAMTools SNP 410602 410602 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold315 SAMTools SNP 412663 412663 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold315 SAMTools SNP 412672 412672 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold315 SAMTools SNP 412677 412677 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold315 SAMTools SNP 414077 414077 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold315 SAMTools SNP 414116 414116 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.097%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold315 SAMTools SNP 414149 414149 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold315 SAMTools SNP 414492 414492 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.49%2C0.00015%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C157:39 scaffold315 SAMTools SNP 414508 414508 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold315 SAMTools SNP 414516 414516 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C66:69 scaffold315 SAMTools SNP 414969 414969 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold315 SAMTools SNP 414980 414980 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.081%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C246:66 scaffold315 SAMTools SNP 415031 415031 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.55%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold315 SAMTools SNP 415561 415561 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 415594 415594 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold315 SAMTools SNP 415953 415953 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C27:31 scaffold315 SAMTools SNP 416001 416001 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold315 SAMTools SNP 417699 417699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold315 SAMTools SNP 417831 417831 36.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold315 SAMTools SNP 417876 417876 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold315 SAMTools SNP 417888 417888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold315 SAMTools SNP 418476 418476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 419049 419049 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 419275 419275 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C27%2C0:51 scaffold315 SAMTools SNP 419389 419389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold315 SAMTools SNP 419410 419410 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold315 SAMTools SNP 420233 420233 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold315 SAMTools SNP 420242 420242 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 420353 420353 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold315 SAMTools SNP 420395 420395 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C107:99 scaffold315 SAMTools SNP 420407 420407 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C146:99 scaffold315 SAMTools SNP 420583 420583 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold315 SAMTools SNP 433602 433602 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.17%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold315 SAMTools SNP 433603 433603 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold315 SAMTools SNP 433673 433673 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold315 SAMTools SNP 442510 442510 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.059%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold315 SAMTools SNP 442584 442584 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0183%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold315 SAMTools SNP 443390 443390 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold315 SAMTools SNP 443403 443403 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 443416 443416 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 446241 446241 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C78:79 scaffold315 SAMTools SNP 446375 446375 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold315 SAMTools SNP 447009 447009 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C218:99 scaffold315 SAMTools SNP 447056 447056 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold315 SAMTools SNP 447265 447265 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold315 SAMTools SNP 447289 447289 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C21%2C0:39 scaffold315 SAMTools SNP 447322 447322 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C145:77 scaffold315 SAMTools SNP 447325 447325 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C186:94 scaffold315 SAMTools SNP 447991 447991 164 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.38%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C170:99 scaffold315 SAMTools SNP 452412 452412 40.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold315 SAMTools SNP 453060 453060 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C30%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.64%2C6.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold315 SAMTools SNP 453282 453282 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C0%2C29%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.26%2C1.8e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold315 SAMTools SNP 453534 453534 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C17%2C41%2C13%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.4%2C2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold315 SAMTools SNP 453659 453659 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C39%2C0:75 scaffold315 SAMTools SNP 453706 453706 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C37%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold315 SAMTools SNP 453868 453868 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C47%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold315 SAMTools SNP 454439 454439 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 455523 455523 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C96%2C0:99 scaffold315 SAMTools SNP 455556 455556 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold315 SAMTools SNP 455839 455839 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold315 SAMTools SNP 455902 455902 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.046%2C0.15%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold315 SAMTools SNP 456360 456360 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.02%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold315 SAMTools SNP 456906 456906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold315 SAMTools SNP 456937 456937 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold315 SAMTools SNP 458240 458240 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 458257 458257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold315 SAMTools SNP 458902 458902 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C30%2C0:57 scaffold315 SAMTools SNP 458951 458951 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold315 SAMTools SNP 459151 459151 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00041%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C200:99 scaffold315 SAMTools SNP 462519 462519 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C169:33 scaffold315 SAMTools SNP 463291 463291 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 463306 463306 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 463394 463394 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 463663 463663 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold315 SAMTools SNP 466003 466003 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold315 SAMTools SNP 466157 466157 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold315 SAMTools SNP 467077 467077 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold315 SAMTools SNP 468213 468213 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold315 SAMTools SNP 480600 480600 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 483347 483347 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 487379 487379 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold315 SAMTools SNP 487570 487570 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.48%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 488463 488463 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold315 SAMTools SNP 488834 488834 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 488843 488843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C27%2C27%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 489452 489452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 489716 489716 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 490128 490128 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 491067 491067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 491121 491121 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold315 SAMTools SNP 493440 493440 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.6e-08%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C198:59 scaffold315 SAMTools SNP 494868 494868 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D901%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C419%2C322%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 494907 494907 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D937%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D243%2C241%2C206%2C200%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 496040 496040 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D533%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C243%2C18%2C155%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 496765 496765 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C66%2C30%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 497112 497112 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C160%2C106%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-10%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 497187 497187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D856%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C311%2C120%2C195%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 502396 502396 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 502451 502451 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold315 SAMTools SNP 502840 502840 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.55%2C0.041%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold315 SAMTools SNP 502843 502843 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.063%2C0.001%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold315 SAMTools SNP 502852 502852 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0014%2C0.0027%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold315 SAMTools SNP 502854 502854 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.013%2C0.0079%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold315 SAMTools SNP 503064 503064 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C72%2C0:99 scaffold315 SAMTools SNP 503104 503104 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.54%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold315 SAMTools SNP 503500 503500 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C3%2C15%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.12%2C5.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold315 SAMTools SNP 503786 503786 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C77:80 scaffold315 SAMTools SNP 504424 504424 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 516992 516992 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 517475 517475 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold315 SAMTools SNP 518475 518475 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold315 SAMTools SNP 518698 518698 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold315 SAMTools SNP 518725 518725 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.65%2C0.015%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold315 SAMTools SNP 518868 518868 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.11%2C1.1e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C118:51 scaffold315 SAMTools SNP 522197 522197 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 522205 522205 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 522271 522271 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold315 SAMTools SNP 522475 522475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 524119 524119 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C7%2C10%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.54%2C9.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold315 SAMTools SNP 530741 530741 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C186:60 scaffold315 SAMTools SNP 531122 531122 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 531326 531326 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.11%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C36:34 scaffold315 SAMTools SNP 533665 533665 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold315 SAMTools SNP 533997 533997 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C0.0039%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C124:79 scaffold315 SAMTools SNP 534004 534004 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold315 SAMTools SNP 534254 534254 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold315 SAMTools SNP 552938 552938 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold315 SAMTools SNP 557864 557864 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0059%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C184:59 scaffold315 SAMTools SNP 558805 558805 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold315 SAMTools SNP 558966 558966 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.01%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C154:43 scaffold315 SAMTools SNP 581952 581952 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D16.4%3BPV4%3D1%2C1.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C48:46 scaffold315 SAMTools SNP 581964 581964 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold315 SAMTools SNP 582605 582605 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.29%2C2.6e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold315 SAMTools SNP 582623 582623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C19%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold315 SAMTools SNP 584556 584556 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold315 SAMTools SNP 585187 585187 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0014%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold315 SAMTools SNP 585470 585470 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold315 SAMTools SNP 585633 585633 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C36%2C0:69 scaffold315 SAMTools SNP 585763 585763 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C39%2C0:75 scaffold315 SAMTools SNP 588159 588159 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.29%2C0.0001%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold315 SAMTools SNP 589409 589409 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C27%2C0:51 scaffold315 SAMTools SNP 589710 589710 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold315 SAMTools SNP 590348 590348 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold315 SAMTools SNP 591709 591709 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold315 SAMTools SNP 592550 592550 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold315 SAMTools SNP 592686 592686 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold315 SAMTools SNP 592707 592707 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold315 SAMTools SNP 592858 592858 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold315 SAMTools SNP 592892 592892 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 593055 593055 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 593490 593490 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 593499 593499 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 593547 593547 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold315 SAMTools SNP 593698 593698 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold315 SAMTools SNP 596105 596105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C13%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.41%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold315 SAMTools SNP 596146 596146 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 596487 596487 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 598478 598478 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold315 SAMTools SNP 599113 599113 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 602743 602743 123 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C99%2C199%2C0%2C190:39 scaffold315 SAMTools SNP 602757 602757 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold315 SAMTools SNP 602764 602764 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C231:62 scaffold315 SAMTools SNP 602990 602990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold315 SAMTools SNP 603026 603026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold315 SAMTools SNP 603316 603316 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold315 SAMTools SNP 603827 603827 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold315 SAMTools SNP 603839 603839 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold315 SAMTools SNP 604019 604019 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.61%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold315 SAMTools SNP 604091 604091 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C102:56 scaffold315 SAMTools SNP 604189 604189 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C105:99 scaffold315 SAMTools SNP 605045 605045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold315 SAMTools SNP 605460 605460 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold315 SAMTools SNP 605669 605669 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold315 SAMTools SNP 605684 605684 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold315 SAMTools SNP 609082 609082 55.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold315 SAMTools SNP 609242 609242 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold315 SAMTools SNP 609293 609293 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold315 SAMTools SNP 609764 609764 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C20:23 scaffold315 SAMTools SNP 609815 609815 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold315 SAMTools SNP 610139 610139 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold315 SAMTools SNP 610152 610152 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C134:99 scaffold315 SAMTools SNP 610672 610672 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold315 SAMTools SNP 611224 611224 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold315 SAMTools SNP 611236 611236 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold315 SAMTools SNP 611251 611251 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold315 SAMTools SNP 611477 611477 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold315 SAMTools SNP 611501 611501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold315 SAMTools SNP 611734 611734 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold315 SAMTools SNP 612177 612177 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.5%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold315 SAMTools SNP 612192 612192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 612597 612597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C33%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold315 SAMTools SNP 612622 612622 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C14%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 615191 615191 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold315 SAMTools SNP 617349 617349 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold315 SAMTools SNP 618207 618207 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C224:99 scaffold315 SAMTools SNP 618984 618984 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C74:42 scaffold315 SAMTools SNP 624094 624094 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C33%2C0:63 scaffold315 SAMTools SNP 624196 624196 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold315 SAMTools SNP 624211 624211 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C39%2C7%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.047%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold315 SAMTools SNP 624224 624224 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C8%2C30%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold315 SAMTools SNP 624476 624476 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C38%2C17%3BMQ%3D50%3BFQ%3D211%3BPV4%3D5.9e-05%2C0.00025%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold315 SAMTools SNP 624544 624544 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold315 SAMTools SNP 624607 624607 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 625280 625280 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.36%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 626238 626238 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 626291 626291 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold315 SAMTools SNP 626721 626721 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold315 SAMTools SNP 627288 627288 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold315 SAMTools SNP 627701 627701 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.082%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold315 SAMTools SNP 627831 627831 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C64%2C0%2C11%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.59%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold315 SAMTools SNP 627833 627833 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C64%2C0%2C12%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold315 SAMTools SNP 630006 630006 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold315 SAMTools SNP 633688 633688 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C11%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.001%2C0.0053%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold315 SAMTools SNP 634058 634058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C0%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold315 SAMTools SNP 634064 634064 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 634195 634195 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold315 SAMTools SNP 635249 635249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold315 SAMTools SNP 641638 641638 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold315 SAMTools SNP 641704 641704 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D52%2C0%2C206%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C20:23 scaffold315 SAMTools SNP 642078 642078 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C83%2C2%2C27%3BMQ%3D46%3BFQ%3D103%3BPV4%3D0.24%2C0.18%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C245:99 scaffold315 SAMTools SNP 642284 642284 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C81%2C2%2C35%3BMQ%3D47%3BFQ%3D143%3BPV4%3D0.15%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold315 SAMTools SNP 642359 642359 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C19%3BMQ%3D32%3BFQ%3D175%3BPV4%3D0.46%2C0.072%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C214:99 scaffold315 SAMTools SNP 642545 642545 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold315 SAMTools SNP 644441 644441 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C44%3BMQ%3D34%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C253%2C0:99 scaffold315 SAMTools SNP 644444 644444 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C37%3BMQ%3D36%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C232%2C0:99 scaffold315 SAMTools SNP 644480 644480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 645286 645286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold315 SAMTools SNP 645313 645313 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C5%3BMQ%3D41%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C197:55 scaffold315 SAMTools SNP 648756 648756 31.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold317 SAMTools SNP 7222 7222 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold317 SAMTools SNP 7956 7956 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold317 SAMTools SNP 8520 8520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 9270 9270 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold317 SAMTools SNP 13498 13498 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold317 SAMTools SNP 13902 13902 14.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold317 SAMTools SNP 13974 13974 91.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold317 SAMTools SNP 103538 103538 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold317 SAMTools SNP 134669 134669 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold317 SAMTools SNP 134671 134671 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold317 SAMTools SNP 134779 134779 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold317 SAMTools SNP 134864 134864 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold317 SAMTools SNP 138737 138737 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold317 SAMTools SNP 149569 149569 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold317 SAMTools SNP 149577 149577 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold317 SAMTools SNP 149627 149627 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold317 SAMTools SNP 159618 159618 16.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold317 SAMTools SNP 202877 202877 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold317 SAMTools SNP 203218 203218 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold317 SAMTools SNP 216826 216826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold317 SAMTools SNP 235543 235543 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold317 SAMTools SNP 374518 374518 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold317 SAMTools SNP 462466 462466 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.8e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C182:40 scaffold317 SAMTools SNP 542054 542054 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.18%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold317 SAMTools SNP 545088 545088 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold317 SAMTools SNP 545507 545507 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C179:99 scaffold317 SAMTools SNP 545564 545564 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold317 SAMTools SNP 545666 545666 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C154:51 scaffold317 SAMTools SNP 545823 545823 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold317 SAMTools SNP 548652 548652 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 549436 549436 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold317 SAMTools SNP 549811 549811 41.8 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C47%2C41%2C72%2C0%2C69:10 scaffold317 SAMTools SNP 549838 549838 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold317 SAMTools SNP 549862 549862 53.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold317 SAMTools SNP 549880 549880 23.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold317 SAMTools SNP 549961 549961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 549974 549974 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 550301 550301 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 550311 550311 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 550459 550459 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold317 SAMTools SNP 550742 550742 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold317 SAMTools SNP 554342 554342 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold317 SAMTools SNP 589884 589884 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold317 SAMTools SNP 590176 590176 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold317 SAMTools SNP 592385 592385 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.37%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C239:99 scaffold317 SAMTools SNP 592386 592386 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.035%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold317 SAMTools SNP 592395 592395 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold317 SAMTools SNP 593341 593341 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold317 SAMTools SNP 593604 593604 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold32 SAMTools SNP 28302 28302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold32 SAMTools SNP 28310 28310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold32 SAMTools SNP 38183 38183 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold32 SAMTools SNP 40155 40155 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold32 SAMTools SNP 40172 40172 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold32 SAMTools SNP 43606 43606 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold32 SAMTools SNP 43613 43613 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold32 SAMTools SNP 43674 43674 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold32 SAMTools SNP 59434 59434 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold32 SAMTools SNP 59460 59460 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold32 SAMTools SNP 59490 59490 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold32 SAMTools SNP 63123 63123 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold32 SAMTools SNP 63140 63140 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold32 SAMTools SNP 66987 66987 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.21%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold32 SAMTools SNP 67344 67344 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.055%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold32 SAMTools SNP 68353 68353 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold32 SAMTools SNP 69043 69043 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold32 SAMTools SNP 72544 72544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold32 SAMTools SNP 72898 72898 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold32 SAMTools SNP 102140 102140 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold32 SAMTools SNP 109308 109308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C10%2C234%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold32 SAMTools SNP 109905 109905 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold32 SAMTools SNP 109988 109988 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold32 SAMTools SNP 111689 111689 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C22%2C1%2C3%3BMQ%3D47%3BFQ%3D9.53%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold32 SAMTools SNP 111919 111919 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold32 SAMTools SNP 112124 112124 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C252:99 scaffold32 SAMTools SNP 112155 112155 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C227:99 scaffold32 SAMTools SNP 112176 112176 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold32 SAMTools SNP 115366 115366 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C76%2C8%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 124110 124110 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C39%2C16%2C25%3BMQ%3D21%3BFQ%3D20.1%3BPV4%3D0.057%2C1%2C0.0068%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C196:50 scaffold32 SAMTools SNP 124164 124164 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C48%3BMQ%3D29%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C255%2C0:99 scaffold32 SAMTools SNP 152121 152121 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.12%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold32 SAMTools SNP 152149 152149 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0028%2C0.00038%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold32 SAMTools SNP 156714 156714 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold32 SAMTools SNP 157041 157041 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold32 SAMTools SNP 157050 157050 83.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C15%2C0:27 scaffold32 SAMTools SNP 157525 157525 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold32 SAMTools SNP 157544 157544 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold32 SAMTools SNP 158173 158173 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold32 SAMTools SNP 161166 161166 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold32 SAMTools SNP 161918 161918 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold32 SAMTools SNP 162461 162461 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C243:99 scaffold32 SAMTools SNP 162478 162478 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C5%2C54%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.45%2C2.9e-16%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold32 SAMTools SNP 162559 162559 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C48%2C90%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 163042 163042 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C261%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold32 SAMTools SNP 163111 163111 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C184%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold32 SAMTools SNP 163597 163597 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C56%2C20%2C161%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 164095 164095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold32 SAMTools SNP 165936 165936 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C168%2C163%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-90%2C4e-64%2C1%2C1.3e-39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 165937 165937 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C181%2C125%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D9.1e-62%2C4.7e-44%2C1%2C3.5e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold32 SAMTools SNP 165942 165942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C184%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold32 SAMTools SNP 165989 165989 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C108%2C0%2C42%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C6.4e-37%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold32 SAMTools SNP 167123 167123 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C248:99 scaffold32 SAMTools SNP 167177 167177 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold32 SAMTools SNP 167204 167204 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold32 SAMTools SNP 167206 167206 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.29%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold32 SAMTools SNP 167236 167236 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C10%2C18%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.12%2C2.2e-29%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold32 SAMTools SNP 167705 167705 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C206:99 scaffold32 SAMTools SNP 167738 167738 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold32 SAMTools SNP 167767 167767 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold32 SAMTools SNP 168132 168132 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold32 SAMTools SNP 168185 168185 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold32 SAMTools SNP 168470 168470 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.12%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold32 SAMTools SNP 168517 168517 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C63:66 scaffold32 SAMTools SNP 168566 168566 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C7%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D3e-05%2C1.1e-24%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C244:78 scaffold32 SAMTools SNP 174030 174030 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold32 SAMTools SNP 174472 174472 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.011%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold32 SAMTools SNP 174493 174493 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold32 SAMTools SNP 174498 174498 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold32 SAMTools SNP 177538 177538 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 177976 177976 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold32 SAMTools SNP 178026 178026 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.45%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold32 SAMTools SNP 178069 178069 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C36%2C0:61 scaffold32 SAMTools SNP 179830 179830 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold32 SAMTools SNP 186042 186042 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold32 SAMTools SNP 188704 188704 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C8%2C0%3BMQ%3D49%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold32 SAMTools SNP 188725 188725 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C0%3BMQ%3D49%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold32 SAMTools SNP 190898 190898 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold32 SAMTools SNP 191797 191797 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C1%3BMQ%3D47%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold32 SAMTools SNP 193094 193094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold32 SAMTools SNP 193253 193253 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold32 SAMTools SNP 194893 194893 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 194926 194926 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.0039%2C0.022%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold32 SAMTools SNP 195010 195010 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C16%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.00012%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 195018 195018 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C17%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C2.6e-05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 195037 195037 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C73%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold32 SAMTools SNP 221251 221251 26.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold32 SAMTools SNP 225542 225542 12.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold32 SAMTools SNP 225787 225787 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold32 SAMTools SNP 226346 226346 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C4.6e-22%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold32 SAMTools SNP 227329 227329 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C207:54 scaffold321 SAMTools SNP 1525 1525 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold321 SAMTools SNP 1616 1616 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D18%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C48%2C0:91 scaffold321 SAMTools SNP 2592 2592 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold321 SAMTools SNP 2631 2631 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold321 SAMTools SNP 3297 3297 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold321 SAMTools SNP 3308 3308 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold321 SAMTools SNP 4322 4322 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0019%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C209:41 scaffold321 SAMTools SNP 4778 4778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold321 SAMTools SNP 4826 4826 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold321 SAMTools SNP 5171 5171 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold321 SAMTools SNP 5213 5213 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C14%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold321 SAMTools SNP 5427 5427 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C18%2C0:33 scaffold321 SAMTools SNP 5529 5529 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C18%2C0:33 scaffold321 SAMTools SNP 5541 5541 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold321 SAMTools SNP 5553 5553 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold321 SAMTools SNP 5574 5574 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold321 SAMTools SNP 6402 6402 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C43%3BMQ%3D48%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C73:99 scaffold321 SAMTools SNP 7231 7231 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold321 SAMTools SNP 7252 7252 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold321 SAMTools SNP 7468 7468 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 8268 8268 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold321 SAMTools SNP 8548 8548 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 9765 9765 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold321 SAMTools SNP 9818 9818 99.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold321 SAMTools SNP 9922 9922 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold321 SAMTools SNP 10361 10361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.45%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 11156 11156 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold321 SAMTools SNP 11199 11199 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold321 SAMTools SNP 11640 11640 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold321 SAMTools SNP 13364 13364 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C30%2C0:57 scaffold321 SAMTools SNP 14345 14345 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C3%3BMQ%3D42%3BFQ%3D31%3BPV4%3D1%2C8e-08%2C0.19%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold321 SAMTools SNP 14359 14359 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D41%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C194:34 scaffold321 SAMTools SNP 14384 14384 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D34%3BFQ%3D39%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C106:69 scaffold321 SAMTools SNP 14899 14899 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold321 SAMTools SNP 14904 14904 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D40%3BFQ%3D85%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C112:99 scaffold321 SAMTools SNP 15340 15340 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 22101 22101 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C4%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 22682 22682 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C80%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold321 SAMTools SNP 22695 22695 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C22%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C253:99 scaffold321 SAMTools SNP 23538 23538 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.036%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold321 SAMTools SNP 24642 24642 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold321 SAMTools SNP 24723 24723 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C134:33 scaffold321 SAMTools SNP 24736 24736 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C2.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C124:90 scaffold321 SAMTools SNP 26522 26522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold321 SAMTools SNP 26546 26546 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold321 SAMTools SNP 43371 43371 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold321 SAMTools SNP 122970 122970 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold321 SAMTools SNP 122999 122999 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold321 SAMTools SNP 125034 125034 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 132716 132716 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold321 SAMTools SNP 132758 132758 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold321 SAMTools SNP 142095 142095 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 212137 212137 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold321 SAMTools SNP 233574 233574 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold321 SAMTools SNP 236430 236430 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 238066 238066 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 243422 243422 30.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold321 SAMTools SNP 246767 246767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold321 SAMTools SNP 247740 247740 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C13%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.026%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold321 SAMTools SNP 247757 247757 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold321 SAMTools SNP 247780 247780 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold321 SAMTools SNP 248020 248020 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold321 SAMTools SNP 248065 248065 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold321 SAMTools SNP 248391 248391 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold321 SAMTools SNP 248424 248424 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 248439 248439 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold321 SAMTools SNP 250188 250188 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold321 SAMTools SNP 250197 250197 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold321 SAMTools SNP 250217 250217 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold321 SAMTools SNP 250245 250245 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold321 SAMTools SNP 251327 251327 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D47%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold321 SAMTools SNP 251947 251947 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C24%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.52%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold321 SAMTools SNP 251973 251973 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C13%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C246:99 scaffold321 SAMTools SNP 251981 251981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold321 SAMTools SNP 252349 252349 222 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0%2C237%2C7%2C234:99 scaffold321 SAMTools SNP 252380 252380 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.0035%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold321 SAMTools SNP 252775 252775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C10%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 253579 253579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold321 SAMTools SNP 253603 253603 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold321 SAMTools SNP 253846 253846 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C181:78 scaffold321 SAMTools SNP 254077 254077 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold321 SAMTools SNP 254078 254078 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold321 SAMTools SNP 255491 255491 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold321 SAMTools SNP 255534 255534 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold321 SAMTools SNP 256056 256056 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold321 SAMTools SNP 256426 256426 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C237:99 scaffold321 SAMTools SNP 256455 256455 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold321 SAMTools SNP 256495 256495 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold321 SAMTools SNP 257152 257152 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold321 SAMTools SNP 258137 258137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold321 SAMTools SNP 258192 258192 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold321 SAMTools SNP 258206 258206 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold321 SAMTools SNP 260959 260959 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C69%2C0:99 scaffold321 SAMTools SNP 262939 262939 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold321 SAMTools SNP 263159 263159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold321 SAMTools SNP 267113 267113 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0084%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold321 SAMTools SNP 267138 267138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold321 SAMTools SNP 267518 267518 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C17%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.49%2C1.4e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold321 SAMTools SNP 267621 267621 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C60%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.11%2C1.1e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold321 SAMTools SNP 267697 267697 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C54%2C2%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.34%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold321 SAMTools SNP 267703 267703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C57%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 268175 268175 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C16%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.099%2C1.4e-19%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold321 SAMTools SNP 268187 268187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1.3e-09%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 268485 268485 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 269356 269356 88.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold321 SAMTools SNP 269787 269787 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C11%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.41%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold321 SAMTools SNP 269790 269790 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C25%2C8%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.24%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold321 SAMTools SNP 270373 270373 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.021%2C0.29%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold321 SAMTools SNP 270597 270597 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.045%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C215:99 scaffold321 SAMTools SNP 270624 270624 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C183:54 scaffold321 SAMTools SNP 272330 272330 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold321 SAMTools SNP 294391 294391 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold321 SAMTools SNP 294412 294412 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold321 SAMTools SNP 294436 294436 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold321 SAMTools SNP 295061 295061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold321 SAMTools SNP 296019 296019 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C235:99 scaffold321 SAMTools SNP 296073 296073 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D84.5%3BPV4%3D1%2C0.097%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C121:99 scaffold321 SAMTools SNP 296362 296362 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold321 SAMTools SNP 296854 296854 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C7.5e-14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 298219 298219 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold321 SAMTools SNP 308412 308412 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold321 SAMTools SNP 309636 309636 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C63%2C0:99 scaffold321 SAMTools SNP 318210 318210 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold321 SAMTools SNP 318681 318681 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold321 SAMTools SNP 319467 319467 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.52%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold321 SAMTools SNP 319509 319509 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C1.6e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold321 SAMTools SNP 321108 321108 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.62%2C0.2%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold321 SAMTools SNP 330381 330381 37.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold321 SAMTools SNP 330661 330661 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold321 SAMTools SNP 330696 330696 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold321 SAMTools SNP 331484 331484 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold321 SAMTools SNP 331492 331492 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.048%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold321 SAMTools SNP 331593 331593 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0022%2C2e-05%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold321 SAMTools SNP 335126 335126 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C21%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C9.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 336031 336031 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold321 SAMTools SNP 357130 357130 14.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold321 SAMTools SNP 357292 357292 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold321 SAMTools SNP 357442 357442 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold321 SAMTools SNP 367204 367204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C58%2C50%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 369790 369790 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C252:99 scaffold321 SAMTools SNP 370257 370257 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C4%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.03%2C0.0058%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold321 SAMTools SNP 373172 373172 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold321 SAMTools SNP 373239 373239 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold321 SAMTools SNP 373471 373471 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold321 SAMTools SNP 375236 375236 33.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold321 SAMTools SNP 376965 376965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold321 SAMTools SNP 378229 378229 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold321 SAMTools SNP 383634 383634 91.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold321 SAMTools SNP 385117 385117 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold321 SAMTools SNP 385348 385348 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold321 SAMTools SNP 493394 493394 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold321 SAMTools SNP 608426 608426 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C66%2C0:99 scaffold321 SAMTools SNP 608494 608494 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C86%2C42%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1.9e-07%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 608549 608549 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C86%2C63%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 610470 610470 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C48%2C57%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold321 SAMTools SNP 610491 610491 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold321 SAMTools SNP 610509 610509 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C58%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C184%2C0:99 scaffold321 SAMTools SNP 610520 610520 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold321 SAMTools SNP 634655 634655 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold322 SAMTools SNP 5563 5563 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.27%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold322 SAMTools SNP 5622 5622 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.077%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C110:67 scaffold322 SAMTools SNP 8985 8985 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold322 SAMTools SNP 9017 9017 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold322 SAMTools SNP 9042 9042 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold322 SAMTools SNP 10033 10033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold322 SAMTools SNP 10038 10038 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold322 SAMTools SNP 10057 10057 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C15:18 scaffold322 SAMTools SNP 15688 15688 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold322 SAMTools SNP 15707 15707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold322 SAMTools SNP 17323 17323 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold322 SAMTools SNP 17329 17329 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold322 SAMTools SNP 17971 17971 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold322 SAMTools SNP 18083 18083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold322 SAMTools SNP 18105 18105 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold322 SAMTools SNP 33547 33547 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.53%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold322 SAMTools SNP 36718 36718 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold322 SAMTools SNP 49182 49182 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold322 SAMTools SNP 49209 49209 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold322 SAMTools SNP 49236 49236 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C81%2C0:99 scaffold322 SAMTools SNP 49356 49356 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C25%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.01%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C240:99 scaffold322 SAMTools SNP 49872 49872 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C1%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold322 SAMTools SNP 50027 50027 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold322 SAMTools SNP 50179 50179 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold322 SAMTools SNP 50402 50402 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold322 SAMTools SNP 50422 50422 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold322 SAMTools SNP 50531 50531 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C45%2C0:87 scaffold322 SAMTools SNP 50596 50596 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C63%2C0:99 scaffold322 SAMTools SNP 50623 50623 47.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold322 SAMTools SNP 221080 221080 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C15%2C3%3BMQ%3D46%3BFQ%3D58%3BPV4%3D0.62%2C2.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C216:88 scaffold322 SAMTools SNP 228710 228710 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C54%2C0:99 scaffold322 SAMTools SNP 231824 231824 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C48%2C0:93 scaffold322 SAMTools SNP 231893 231893 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold322 SAMTools SNP 238489 238489 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C0%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.062%2C8.4e-18%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C213:63 scaffold322 SAMTools SNP 239839 239839 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold322 SAMTools SNP 239880 239880 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold323 SAMTools SNP 35506 35506 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold323 SAMTools SNP 35541 35541 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold323 SAMTools SNP 35559 35559 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.14%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold323 SAMTools SNP 37542 37542 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold323 SAMTools SNP 39753 39753 94.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C2.6e-11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C1%2C0:4 scaffold323 SAMTools SNP 40327 40327 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold323 SAMTools SNP 40335 40335 27.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold323 SAMTools SNP 40522 40522 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.8e-18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold323 SAMTools SNP 42194 42194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C59%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold323 SAMTools SNP 43527 43527 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold323 SAMTools SNP 45038 45038 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold323 SAMTools SNP 45041 45041 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold323 SAMTools SNP 71338 71338 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold323 SAMTools SNP 71340 71340 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold323 SAMTools SNP 72463 72463 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold323 SAMTools SNP 72487 72487 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold323 SAMTools SNP 72583 72583 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C11%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.016%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold323 SAMTools SNP 72619 72619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold323 SAMTools SNP 72646 72646 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold323 SAMTools SNP 73081 73081 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold323 SAMTools SNP 73819 73819 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold323 SAMTools SNP 73843 73843 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold323 SAMTools SNP 73863 73863 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold323 SAMTools SNP 73933 73933 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold323 SAMTools SNP 74554 74554 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold323 SAMTools SNP 74590 74590 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold323 SAMTools SNP 83961 83961 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold323 SAMTools SNP 85246 85246 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold324 SAMTools SNP 489 489 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 656 656 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 692 692 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold324 SAMTools SNP 1408 1408 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C179:99 scaffold324 SAMTools SNP 1415 1415 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C184:86 scaffold324 SAMTools SNP 1446 1446 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold324 SAMTools SNP 1964 1964 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C143:99 scaffold324 SAMTools SNP 1971 1971 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C201:99 scaffold324 SAMTools SNP 7203 7203 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 7206 7206 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 9410 9410 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.19%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold324 SAMTools SNP 13705 13705 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold324 SAMTools SNP 13720 13720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold324 SAMTools SNP 13860 13860 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C69%2C0:99 scaffold324 SAMTools SNP 17193 17193 162 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C42%2C0%2C191%2C27%2C188:81 scaffold324 SAMTools SNP 17203 17203 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C168:99 scaffold324 SAMTools SNP 22502 22502 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.46%2C0.023%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold324 SAMTools SNP 24146 24146 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 24165 24165 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 37886 37886 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold324 SAMTools SNP 40946 40946 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold324 SAMTools SNP 44778 44778 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold324 SAMTools SNP 44817 44817 34.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold324 SAMTools SNP 45191 45191 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold324 SAMTools SNP 45407 45407 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold324 SAMTools SNP 45608 45608 89.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C21%2C0:39 scaffold324 SAMTools SNP 45689 45689 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold324 SAMTools SNP 46820 46820 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold324 SAMTools SNP 46846 46846 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold324 SAMTools SNP 183228 183228 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold324 SAMTools SNP 183249 183249 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold324 SAMTools SNP 183989 183989 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold324 SAMTools SNP 184087 184087 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00039%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C210:50 scaffold324 SAMTools SNP 185341 185341 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold324 SAMTools SNP 185382 185382 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold324 SAMTools SNP 185958 185958 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold324 SAMTools SNP 186033 186033 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold324 SAMTools SNP 186308 186308 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold324 SAMTools SNP 186355 186355 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold324 SAMTools SNP 186532 186532 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold324 SAMTools SNP 186598 186598 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D0.4%2C0.00027%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold324 SAMTools SNP 186619 186619 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold324 SAMTools SNP 186664 186664 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold324 SAMTools SNP 189474 189474 9.49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold324 SAMTools SNP 196105 196105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 196159 196159 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.0011%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C236:92 scaffold324 SAMTools SNP 198660 198660 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C42%2C0:81 scaffold324 SAMTools SNP 199158 199158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold324 SAMTools SNP 199255 199255 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.011%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C127:41 scaffold324 SAMTools SNP 222160 222160 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 222196 222196 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 223002 223002 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 223071 223071 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 223086 223086 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 223843 223843 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 224182 224182 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold324 SAMTools SNP 225527 225527 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold324 SAMTools SNP 227685 227685 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold324 SAMTools SNP 227714 227714 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold324 SAMTools SNP 227753 227753 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold324 SAMTools SNP 227762 227762 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C250:99 scaffold324 SAMTools SNP 228317 228317 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.59%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold324 SAMTools SNP 228338 228338 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 231019 231019 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold324 SAMTools SNP 231077 231077 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.46%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold324 SAMTools SNP 232477 232477 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold324 SAMTools SNP 233984 233984 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 234003 234003 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 234053 234053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold324 SAMTools SNP 234541 234541 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold324 SAMTools SNP 234550 234550 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold324 SAMTools SNP 235065 235065 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C2%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.062%2C9.4e-10%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold324 SAMTools SNP 235396 235396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold324 SAMTools SNP 235412 235412 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.45%2C0.00091%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold324 SAMTools SNP 235434 235434 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.57%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold324 SAMTools SNP 236432 236432 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C210:99 scaffold324 SAMTools SNP 236434 236434 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold324 SAMTools SNP 236453 236453 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.027%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C210:99 scaffold324 SAMTools SNP 236458 236458 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.027%2C0.35%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C179:99 scaffold324 SAMTools SNP 237092 237092 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 240546 240546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold324 SAMTools SNP 240612 240612 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D0.49%2C0.018%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C52:55 scaffold324 SAMTools SNP 240767 240767 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold324 SAMTools SNP 240768 240768 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold324 SAMTools SNP 240939 240939 58.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C6.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C13%2C0:23 scaffold324 SAMTools SNP 259676 259676 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold324 SAMTools SNP 259690 259690 176 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C42%2C0%2C191%2C12%2C188:81 scaffold324 SAMTools SNP 271251 271251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold324 SAMTools SNP 277397 277397 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold324 SAMTools SNP 285603 285603 8.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold324 SAMTools SNP 286721 286721 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold324 SAMTools SNP 291688 291688 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C4%2C46%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold324 SAMTools SNP 297251 297251 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C44%2C19%2C2%3BMQ%3D49%3BFQ%3D147%3BPV4%3D0.0011%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold324 SAMTools SNP 303495 303495 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 303522 303522 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C50%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold324 SAMTools SNP 308034 308034 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C16%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 310968 310968 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 317211 317211 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold324 SAMTools SNP 320076 320076 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C63%2C0:99 scaffold324 SAMTools SNP 320207 320207 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C41%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00033%2C2.5e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold324 SAMTools SNP 320286 320286 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-159%3BPV4%3D1%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C132%2C0:99 scaffold324 SAMTools SNP 327474 327474 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold324 SAMTools SNP 327888 327888 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 328012 328012 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.32%2C8.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold324 SAMTools SNP 328520 328520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C27%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold324 SAMTools SNP 328921 328921 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold324 SAMTools SNP 329560 329560 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold324 SAMTools SNP 329822 329822 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 329852 329852 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold324 SAMTools SNP 329921 329921 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 329927 329927 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold324 SAMTools SNP 330189 330189 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold324 SAMTools SNP 330240 330240 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.04%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold324 SAMTools SNP 330282 330282 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.57%2C7.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold324 SAMTools SNP 330294 330294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.36%2C2.1e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold324 SAMTools SNP 330375 330375 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 330402 330402 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold324 SAMTools SNP 330787 330787 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold324 SAMTools SNP 330949 330949 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold324 SAMTools SNP 331009 331009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold324 SAMTools SNP 331012 331012 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold324 SAMTools SNP 331281 331281 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 331968 331968 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold324 SAMTools SNP 333017 333017 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold324 SAMTools SNP 333059 333059 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold324 SAMTools SNP 333062 333062 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold324 SAMTools SNP 335752 335752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C27%3BMQ%3D48%3BFQ%3D-88%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold324 SAMTools SNP 335919 335919 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold324 SAMTools SNP 336225 336225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C1%2C103%2C0%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.46%2C0.018%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold324 SAMTools SNP 337891 337891 92.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold324 SAMTools SNP 340496 340496 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold324 SAMTools SNP 342726 342726 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.2%2C5.5e-16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold324 SAMTools SNP 413743 413743 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold324 SAMTools SNP 414439 414439 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold324 SAMTools SNP 414456 414456 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold324 SAMTools SNP 415083 415083 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold324 SAMTools SNP 443169 443169 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold324 SAMTools SNP 446540 446540 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold324 SAMTools SNP 448172 448172 56.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold324 SAMTools SNP 450898 450898 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold326 SAMTools SNP 676 676 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold326 SAMTools SNP 2744 2744 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold326 SAMTools SNP 8171 8171 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold326 SAMTools SNP 8566 8566 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold326 SAMTools SNP 9082 9082 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.012%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold326 SAMTools SNP 9152 9152 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold326 SAMTools SNP 11810 11810 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold329 SAMTools SNP 2164 2164 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold329 SAMTools SNP 2644 2644 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold329 SAMTools SNP 10996 10996 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold329 SAMTools SNP 78496 78496 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C181%2C0:99 scaffold329 SAMTools SNP 78575 78575 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold329 SAMTools SNP 78596 78596 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C59%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold329 SAMTools SNP 78979 78979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold329 SAMTools SNP 79027 79027 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C27%2C0:51 scaffold329 SAMTools SNP 149168 149168 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold329 SAMTools SNP 153602 153602 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D78.6%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C107:99 scaffold329 SAMTools SNP 153725 153725 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold329 SAMTools SNP 153786 153786 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold329 SAMTools SNP 254752 254752 29.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold331 SAMTools SNP 14243 14243 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold331 SAMTools SNP 14309 14309 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold331 SAMTools SNP 19270 19270 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold331 SAMTools SNP 19306 19306 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold331 SAMTools SNP 19372 19372 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold331 SAMTools SNP 19493 19493 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold331 SAMTools SNP 27434 27434 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C112:72 scaffold331 SAMTools SNP 55183 55183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold331 SAMTools SNP 55201 55201 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold331 SAMTools SNP 56578 56578 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold331 SAMTools SNP 57667 57667 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 57195 57195 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 57230 57230 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 57990 57990 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 60889 60889 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 61469 61469 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold332 SAMTools SNP 67087 67087 26.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold332 SAMTools SNP 67671 67671 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold332 SAMTools SNP 67763 67763 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.7e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C104:34 scaffold332 SAMTools SNP 74795 74795 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold332 SAMTools SNP 121569 121569 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.61%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold332 SAMTools SNP 121598 121598 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold332 SAMTools SNP 121662 121662 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.031%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold332 SAMTools SNP 122807 122807 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C39%2C0:75 scaffold332 SAMTools SNP 136874 136874 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C126%2C0:99 scaffold332 SAMTools SNP 138086 138086 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold332 SAMTools SNP 138459 138459 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold332 SAMTools SNP 138493 138493 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold332 SAMTools SNP 142504 142504 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C42%2C0:81 scaffold332 SAMTools SNP 142595 142595 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold332 SAMTools SNP 142655 142655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold332 SAMTools SNP 146872 146872 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 159072 159072 27.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold332 SAMTools SNP 159337 159337 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C23%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.03%2C5.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold332 SAMTools SNP 159360 159360 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 309871 309871 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold332 SAMTools SNP 310036 310036 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 366919 366919 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold332 SAMTools SNP 370000 370000 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.27%2C0.045%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold332 SAMTools SNP 370061 370061 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 370098 370098 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold332 SAMTools SNP 370537 370537 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 371856 371856 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold332 SAMTools SNP 379347 379347 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold332 SAMTools SNP 381919 381919 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C106:40 scaffold332 SAMTools SNP 382047 382047 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C37:40 scaffold332 SAMTools SNP 383606 383606 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0030%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold332 SAMTools SNP 421976 421976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold332 SAMTools SNP 422389 422389 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold332 SAMTools SNP 422621 422621 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold332 SAMTools SNP 422777 422777 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold332 SAMTools SNP 422784 422784 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold332 SAMTools SNP 423004 423004 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold332 SAMTools SNP 423015 423015 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold332 SAMTools SNP 423251 423251 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold332 SAMTools SNP 423302 423302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold332 SAMTools SNP 426949 426949 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold332 SAMTools SNP 472747 472747 51.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold332 SAMTools SNP 474275 474275 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 475113 475113 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 476104 476104 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold332 SAMTools SNP 476353 476353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold332 SAMTools SNP 476375 476375 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold332 SAMTools SNP 477497 477497 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 477532 477532 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 482253 482253 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold332 SAMTools SNP 484382 484382 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold332 SAMTools SNP 484412 484412 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold332 SAMTools SNP 544474 544474 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold332 SAMTools SNP 544754 544754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold332 SAMTools SNP 545084 545084 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C34%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 545090 545090 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C21%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold332 SAMTools SNP 545120 545120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C38%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00064%2C1e-06%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 545150 545150 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C6%2C10%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.011%2C6.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold332 SAMTools SNP 545165 545165 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0011%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 545573 545573 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C58%2C52%3BMQ%3D50%3BFQ%3D-205%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold332 SAMTools SNP 545949 545949 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C10%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.093%2C8.9e-05%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold332 SAMTools SNP 545958 545958 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.027%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold332 SAMTools SNP 545961 545961 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.012%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold332 SAMTools SNP 546471 546471 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold332 SAMTools SNP 550476 550476 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0086%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold332 SAMTools SNP 551588 551588 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C155:99 scaffold332 SAMTools SNP 551591 551591 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C230:99 scaffold332 SAMTools SNP 552128 552128 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C88%2C107%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 552434 552434 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C94%2C3%2C22%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.57%2C1.5e-16%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold332 SAMTools SNP 552494 552494 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C89%2C19%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D4e-10%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold332 SAMTools SNP 552714 552714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C40%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold332 SAMTools SNP 552777 552777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold332 SAMTools SNP 554036 554036 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C91%2C15%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 554328 554328 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C41%2C59%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D9.1e-06%2C1.7e-16%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold332 SAMTools SNP 554608 554608 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C53%2C18%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D8.3e-06%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold332 SAMTools SNP 555130 555130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C137%2C68%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 555950 555950 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold332 SAMTools SNP 561341 561341 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold332 SAMTools SNP 561376 561376 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold332 SAMTools SNP 576561 576561 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold332 SAMTools SNP 576578 576578 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold332 SAMTools SNP 576827 576827 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold332 SAMTools SNP 576891 576891 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 576990 576990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 577002 577002 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold332 SAMTools SNP 577882 577882 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold332 SAMTools SNP 577985 577985 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold332 SAMTools SNP 578018 578018 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold332 SAMTools SNP 578310 578310 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 578318 578318 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 578849 578849 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold332 SAMTools SNP 578870 578870 164 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold332 SAMTools SNP 578927 578927 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold332 SAMTools SNP 579946 579946 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold332 SAMTools SNP 580271 580271 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold332 SAMTools SNP 580450 580450 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.22%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C187:99 scaffold332 SAMTools SNP 580470 580470 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.49%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold332 SAMTools SNP 580477 580477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold332 SAMTools SNP 580715 580715 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold332 SAMTools SNP 580775 580775 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C40%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold332 SAMTools SNP 580880 580880 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold332 SAMTools SNP 580931 580931 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold332 SAMTools SNP 580937 580937 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C240:99 scaffold332 SAMTools SNP 581270 581270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold332 SAMTools SNP 581321 581321 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.49%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C238:99 scaffold332 SAMTools SNP 581885 581885 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold332 SAMTools SNP 581891 581891 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold332 SAMTools SNP 582254 582254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold332 SAMTools SNP 583438 583438 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold332 SAMTools SNP 583462 583462 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold332 SAMTools SNP 583779 583779 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C18%2C0:33 scaffold332 SAMTools SNP 584924 584924 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold332 SAMTools SNP 585308 585308 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 587279 587279 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold332 SAMTools SNP 588520 588520 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold332 SAMTools SNP 588529 588529 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C73:75 scaffold332 SAMTools SNP 588532 588532 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.27%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold332 SAMTools SNP 590371 590371 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold332 SAMTools SNP 591023 591023 12.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold332 SAMTools SNP 591480 591480 8.22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold332 SAMTools SNP 592063 592063 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold332 SAMTools SNP 610845 610845 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold332 SAMTools SNP 611479 611479 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold332 SAMTools SNP 612557 612557 120 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C102%2C237%2C0%2C228:33 scaffold332 SAMTools SNP 613435 613435 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.18%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold332 SAMTools SNP 629772 629772 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.027%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold332 SAMTools SNP 630444 630444 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D30.7%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C69:61 scaffold332 SAMTools SNP 654596 654596 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold332 SAMTools SNP 655424 655424 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 655439 655439 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold332 SAMTools SNP 655591 655591 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold332 SAMTools SNP 655636 655636 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold332 SAMTools SNP 656315 656315 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 1067 1067 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold334 SAMTools SNP 1154 1154 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D34.2%3BPV4%3D1%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C69:64 scaffold334 SAMTools SNP 14031 14031 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 14535 14535 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold334 SAMTools SNP 18088 18088 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D42%3BPV4%3D1%2C0.079%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C134:72 scaffold334 SAMTools SNP 21347 21347 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold334 SAMTools SNP 44619 44619 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.54%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C158:79 scaffold334 SAMTools SNP 54068 54068 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C48%2C0:92 scaffold334 SAMTools SNP 57594 57594 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C180:41 scaffold334 SAMTools SNP 57657 57657 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C174:99 scaffold334 SAMTools SNP 57666 57666 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold334 SAMTools SNP 59813 59813 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 63496 63496 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold334 SAMTools SNP 63529 63529 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C234:99 scaffold334 SAMTools SNP 66136 66136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C100%2C17%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 68078 68078 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C2%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C237:37 scaffold334 SAMTools SNP 68096 68096 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.051%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold334 SAMTools SNP 68105 68105 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold334 SAMTools SNP 71646 71646 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C35:38 scaffold334 SAMTools SNP 71667 71667 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold334 SAMTools SNP 71670 71670 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold334 SAMTools SNP 71697 71697 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold334 SAMTools SNP 71781 71781 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.16%2C1%2C1%2C3.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C224:99 scaffold334 SAMTools SNP 71793 71793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold334 SAMTools SNP 72428 72428 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C48%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold334 SAMTools SNP 72473 72473 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold334 SAMTools SNP 72479 72479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold334 SAMTools SNP 73336 73336 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C13%3BMQ%3D35%3BFQ%3D67%3BPV4%3D0.25%2C1%2C0.34%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C94:97 scaffold334 SAMTools SNP 74818 74818 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold334 SAMTools SNP 74953 74953 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold334 SAMTools SNP 76366 76366 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C99%2C0:99 scaffold334 SAMTools SNP 79714 79714 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.1e-23%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C157:52 scaffold334 SAMTools SNP 80182 80182 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold334 SAMTools SNP 80746 80746 28.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold334 SAMTools SNP 81037 81037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold334 SAMTools SNP 81682 81682 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C45%2C0:87 scaffold334 SAMTools SNP 81784 81784 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C230:99 scaffold334 SAMTools SNP 85534 85534 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold334 SAMTools SNP 87019 87019 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C45%2C35%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D4.7e-07%2C6.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold334 SAMTools SNP 87167 87167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C45%2C10%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 87404 87404 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold334 SAMTools SNP 87814 87814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C54%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.015%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 88122 88122 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C29%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold334 SAMTools SNP 88152 88152 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C15%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold334 SAMTools SNP 88351 88351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold334 SAMTools SNP 88363 88363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold334 SAMTools SNP 89333 89333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 89717 89717 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold334 SAMTools SNP 89732 89732 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 89777 89777 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold334 SAMTools SNP 89837 89837 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold334 SAMTools SNP 98627 98627 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold334 SAMTools SNP 101237 101237 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold334 SAMTools SNP 101294 101294 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold334 SAMTools SNP 101326 101326 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 101405 101405 49.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold334 SAMTools SNP 101645 101645 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold334 SAMTools SNP 101772 101772 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold334 SAMTools SNP 103290 103290 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C105%2C0:99 scaffold334 SAMTools SNP 103355 103355 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold334 SAMTools SNP 104651 104651 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold334 SAMTools SNP 104687 104687 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C122:71 scaffold334 SAMTools SNP 105577 105577 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold334 SAMTools SNP 105583 105583 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.25%2C0.36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold334 SAMTools SNP 106089 106089 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.059%2C0.00033%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold334 SAMTools SNP 106572 106572 188 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C72%2C0:99 scaffold334 SAMTools SNP 106627 106627 26.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold334 SAMTools SNP 106669 106669 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 107795 107795 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold334 SAMTools SNP 112899 112899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C53%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold334 SAMTools SNP 115351 115351 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold334 SAMTools SNP 115404 115404 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C104:99 scaffold334 SAMTools SNP 115877 115877 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold334 SAMTools SNP 115885 115885 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold334 SAMTools SNP 115902 115902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 121340 121340 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold334 SAMTools SNP 124636 124636 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.067%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold334 SAMTools SNP 129288 129288 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold334 SAMTools SNP 130224 130224 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.47%2C0.13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold334 SAMTools SNP 132027 132027 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.7%2C2.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold334 SAMTools SNP 132792 132792 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 133041 133041 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.32%2C0.28%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold334 SAMTools SNP 133983 133983 50.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold334 SAMTools SNP 134212 134212 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.00055%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold334 SAMTools SNP 134442 134442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold334 SAMTools SNP 135563 135563 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.055%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold334 SAMTools SNP 145278 145278 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold334 SAMTools SNP 155637 155637 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold334 SAMTools SNP 156846 156846 12 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold334 SAMTools SNP 161204 161204 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold334 SAMTools SNP 172079 172079 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 172496 172496 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 175807 175807 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 176140 176140 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold334 SAMTools SNP 176416 176416 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold334 SAMTools SNP 176432 176432 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold334 SAMTools SNP 176661 176661 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C27%2C0:47 scaffold334 SAMTools SNP 186579 186579 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold334 SAMTools SNP 191471 191471 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 191581 191581 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 199686 199686 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold334 SAMTools SNP 201249 201249 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C78%2C0:99 scaffold334 SAMTools SNP 201297 201297 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C96%2C0:99 scaffold334 SAMTools SNP 201808 201808 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold334 SAMTools SNP 201975 201975 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold334 SAMTools SNP 201991 201991 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 202035 202035 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0021%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold334 SAMTools SNP 212703 212703 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold334 SAMTools SNP 212710 212710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold334 SAMTools SNP 215233 215233 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold334 SAMTools SNP 220817 220817 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C209:99 scaffold334 SAMTools SNP 223185 223185 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 223458 223458 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold334 SAMTools SNP 224069 224069 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D99.6%3BPV4%3D1%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C132:99 scaffold334 SAMTools SNP 224287 224287 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold334 SAMTools SNP 224708 224708 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C12%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 225359 225359 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C36%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold334 SAMTools SNP 226264 226264 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D3.6e-05%2C8.1e-07%2C1%2C1.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold334 SAMTools SNP 226267 226267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold334 SAMTools SNP 226487 226487 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold334 SAMTools SNP 226595 226595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold334 SAMTools SNP 226601 226601 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold334 SAMTools SNP 227095 227095 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C39%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 227290 227290 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold334 SAMTools SNP 229215 229215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold334 SAMTools SNP 229275 229275 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0131%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.032%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C234:31 scaffold334 SAMTools SNP 229281 229281 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold334 SAMTools SNP 229675 229675 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold334 SAMTools SNP 230447 230447 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold334 SAMTools SNP 230654 230654 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 230964 230964 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold334 SAMTools SNP 231036 231036 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold334 SAMTools SNP 231039 231039 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C229:48 scaffold334 SAMTools SNP 231503 231503 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C232:36 scaffold334 SAMTools SNP 231506 231506 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.025%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold334 SAMTools SNP 231720 231720 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 231726 231726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 231759 231759 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold334 SAMTools SNP 231778 231778 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C45%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold334 SAMTools SNP 232075 232075 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.079%2C0.00051%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold334 SAMTools SNP 232085 232085 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.008%2C0.00057%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold334 SAMTools SNP 232424 232424 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 232523 232523 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.48%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 232776 232776 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 233458 233458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C26%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D7.5e-09%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold334 SAMTools SNP 233461 233461 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D2.1e-05%2C0.29%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold334 SAMTools SNP 234289 234289 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D2.8e-05%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold334 SAMTools SNP 234445 234445 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C10%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold334 SAMTools SNP 234463 234463 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold334 SAMTools SNP 234484 234484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold334 SAMTools SNP 237409 237409 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold334 SAMTools SNP 237488 237488 64.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold334 SAMTools SNP 237504 237504 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D47%3BFQ%3D58%3BPV4%3D0.044%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold334 SAMTools SNP 237877 237877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold334 SAMTools SNP 238799 238799 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold334 SAMTools SNP 238912 238912 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold334 SAMTools SNP 239857 239857 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 241554 241554 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold334 SAMTools SNP 241567 241567 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold334 SAMTools SNP 243058 243058 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C50:53 scaffold334 SAMTools SNP 243071 243071 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold334 SAMTools SNP 243425 243425 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold334 SAMTools SNP 244333 244333 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 244626 244626 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 244727 244727 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold334 SAMTools SNP 244729 244729 186 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold334 SAMTools SNP 245010 245010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold334 SAMTools SNP 245466 245466 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.015%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold334 SAMTools SNP 245547 245547 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold334 SAMTools SNP 245549 245549 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold334 SAMTools SNP 245801 245801 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold334 SAMTools SNP 245878 245878 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 245899 245899 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold334 SAMTools SNP 246425 246425 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 246617 246617 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold334 SAMTools SNP 246782 246782 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold334 SAMTools SNP 247383 247383 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold334 SAMTools SNP 247824 247824 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold334 SAMTools SNP 247967 247967 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold334 SAMTools SNP 248751 248751 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 248761 248761 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 248904 248904 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 248922 248922 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold334 SAMTools SNP 249835 249835 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold334 SAMTools SNP 249857 249857 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold334 SAMTools SNP 253522 253522 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C33%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.025%2C5.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold334 SAMTools SNP 253556 253556 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00028%2C1.2e-07%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold334 SAMTools SNP 253563 253563 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C0%2C41%3BMQ%3D50%3BFQ%3D194%3BPV4%3D9.7e-07%2C8.4e-07%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold334 SAMTools SNP 255328 255328 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold334 SAMTools SNP 255343 255343 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C5%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 256190 256190 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold334 SAMTools SNP 256799 256799 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0024%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold334 SAMTools SNP 256849 256849 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold334 SAMTools SNP 280751 280751 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.14%2C2.4e-09%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C71:48 scaffold334 SAMTools SNP 282258 282258 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0048%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold334 SAMTools SNP 282278 282278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold334 SAMTools SNP 283758 283758 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.053%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold334 SAMTools SNP 286063 286063 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold334 SAMTools SNP 288652 288652 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold334 SAMTools SNP 293482 293482 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold334 SAMTools SNP 296981 296981 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold334 SAMTools SNP 298018 298018 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold334 SAMTools SNP 301046 301046 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 301973 301973 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold334 SAMTools SNP 319521 319521 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D43.7%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C71:74 scaffold334 SAMTools SNP 320405 320405 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold334 SAMTools SNP 320418 320418 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold334 SAMTools SNP 324426 324426 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C2.7e-08%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C102:55 scaffold334 SAMTools SNP 331482 331482 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.18%3BPV4%3D1%2C0.038%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C54:31 scaffold334 SAMTools SNP 338671 338671 88.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C8%2C0:14 scaffold334 SAMTools SNP 338911 338911 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C15%2C0%3BMQ%3D43%3BFQ%3D115%3BPV4%3D9.2e-07%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C142:99 scaffold334 SAMTools SNP 338964 338964 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C57%2C2%3BMQ%3D47%3BFQ%3D214%3BPV4%3D1.8e-07%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold334 SAMTools SNP 346442 346442 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 347490 347490 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C0%2C3%3BMQ%3D45%3BFQ%3D32%3BPV4%3D0.059%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold334 SAMTools SNP 351502 351502 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 352639 352639 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 355962 355962 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold334 SAMTools SNP 357242 357242 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D46%3BFQ%3D13.2%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C150:42 scaffold334 SAMTools SNP 357359 357359 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold334 SAMTools SNP 357394 357394 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold334 SAMTools SNP 362866 362866 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1950%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D702%2C577%2C122%2C159%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.00059%2C1%2C1%2C2.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold334 SAMTools SNP 362869 362869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1941%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C920%2C628%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.57%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 363310 363310 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2522%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D628%2C999%2C382%2C403%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 363655 363655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2513%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D588%2C1167%2C361%2C397%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-11%2C0.2%2C1%2C6.2e-157;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 363676 363676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1903%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D360%2C1183%2C180%2C180%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-22%2C5.5e-05%2C1%2C2e-115;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 363724 363724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1942%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C818%2C1087%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 364071 364071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1358%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C528%2C280%2C177%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-33%2C1%2C1%2C1.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 364104 364104 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2162%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D757%2C726%2C331%2C177%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 364140 364140 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1925%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1107%2C811%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 364695 364695 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1808%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D628%2C254%2C610%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-13%2C1.6e-19%2C1%2C2.3e-89;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 364703 364703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D871%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C239%2C191%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 364782 364782 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1947%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D439%2C715%2C210%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-21%2C1%2C1%2C1e-127;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 364815 364815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1799%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D467%2C558%2C255%2C397%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C5.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 369354 369354 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold334 SAMTools SNP 373008 373008 75.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C18%2C0:33 scaffold334 SAMTools SNP 373065 373065 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C34%2C18%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0012%2C1e-31%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold334 SAMTools SNP 374768 374768 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold334 SAMTools SNP 374907 374907 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold334 SAMTools SNP 377285 377285 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold334 SAMTools SNP 420515 420515 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold334 SAMTools SNP 422075 422075 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold334 SAMTools SNP 423866 423866 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold334 SAMTools SNP 424571 424571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 425858 425858 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.024%2C0.14%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 425960 425960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C38%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold334 SAMTools SNP 426518 426518 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold334 SAMTools SNP 427278 427278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C41%3BMQ%3D50%3BFQ%3D-138%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold334 SAMTools SNP 427351 427351 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C215:60 scaffold334 SAMTools SNP 427460 427460 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold334 SAMTools SNP 427519 427519 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C123:37 scaffold334 SAMTools SNP 427640 427640 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 428269 428269 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold334 SAMTools SNP 428607 428607 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold334 SAMTools SNP 428900 428900 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold334 SAMTools SNP 428927 428927 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.022%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C231:95 scaffold334 SAMTools SNP 428996 428996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold334 SAMTools SNP 429189 429189 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold334 SAMTools SNP 429587 429587 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold334 SAMTools SNP 429599 429599 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold334 SAMTools SNP 429689 429689 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D39%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C54%2C0:99 scaffold334 SAMTools SNP 429788 429788 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 430184 430184 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D35%3BFQ%3D-42%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold334 SAMTools SNP 430229 430229 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 430230 430230 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 431330 431330 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 431339 431339 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 431348 431348 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold334 SAMTools SNP 432317 432317 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D45%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold334 SAMTools SNP 432431 432431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D47%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold334 SAMTools SNP 432823 432823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C5%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.75%2C0.32%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 432911 432911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold334 SAMTools SNP 433500 433500 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.052%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 433539 433539 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C63%2C0:99 scaffold334 SAMTools SNP 434367 434367 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold334 SAMTools SNP 440131 440131 69.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold334 SAMTools SNP 440143 440143 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.21%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold334 SAMTools SNP 440151 440151 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.23%2C0.0054%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold334 SAMTools SNP 441518 441518 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.47%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold334 SAMTools SNP 441545 441545 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C232:99 scaffold334 SAMTools SNP 441607 441607 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold334 SAMTools SNP 441659 441659 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.26%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold334 SAMTools SNP 441668 441668 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C12%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold334 SAMTools SNP 442933 442933 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold334 SAMTools SNP 442942 442942 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold334 SAMTools SNP 443004 443004 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0092%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold334 SAMTools SNP 443026 443026 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 443062 443062 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold334 SAMTools SNP 444422 444422 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C143:99 scaffold334 SAMTools SNP 445505 445505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold334 SAMTools SNP 446236 446236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold334 SAMTools SNP 449870 449870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold334 SAMTools SNP 449915 449915 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold334 SAMTools SNP 450161 450161 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0071%2C0.016%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold334 SAMTools SNP 450173 450173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold334 SAMTools SNP 450227 450227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold334 SAMTools SNP 450446 450446 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 452582 452582 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.012%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C254:31 scaffold334 SAMTools SNP 452736 452736 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold334 SAMTools SNP 452754 452754 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C200:99 scaffold334 SAMTools SNP 453671 453671 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C177:99 scaffold334 SAMTools SNP 453678 453678 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.4e-10%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold334 SAMTools SNP 461222 461222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 461399 461399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold334 SAMTools SNP 472993 472993 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold334 SAMTools SNP 473680 473680 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold334 SAMTools SNP 474637 474637 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 477400 477400 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold334 SAMTools SNP 483219 483219 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold334 SAMTools SNP 484205 484205 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold334 SAMTools SNP 484674 484674 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C6%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold334 SAMTools SNP 485100 485100 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 485227 485227 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 485468 485468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 485757 485757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C73%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold334 SAMTools SNP 486013 486013 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.19%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 486318 486318 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold334 SAMTools SNP 486565 486565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C18%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold334 SAMTools SNP 486667 486667 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold334 SAMTools SNP 486703 486703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 487018 487018 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold334 SAMTools SNP 487099 487099 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold334 SAMTools SNP 487117 487117 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C3%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.34%2C2.1e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold334 SAMTools SNP 487151 487151 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold334 SAMTools SNP 487383 487383 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.13%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold334 SAMTools SNP 487396 487396 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold334 SAMTools SNP 492951 492951 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 492978 492978 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 494823 494823 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold334 SAMTools SNP 494856 494856 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold334 SAMTools SNP 497848 497848 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 504757 504757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1109%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C185%2C491%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 505527 505527 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold334 SAMTools SNP 506367 506367 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D873%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C454%2C50%2C326%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C3.6e-60%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 506654 506654 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C172%2C39%2C310%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 506684 506684 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C23%2C25%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.064%2C0.11%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold334 SAMTools SNP 508086 508086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C221%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 508473 508473 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C27%2C77%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-05%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 508482 508482 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C42%2C26%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D3e-07%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold334 SAMTools SNP 508491 508491 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C89%2C7%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C9.9e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 509259 509259 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 510047 510047 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 510214 510214 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C33%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C248:99 scaffold334 SAMTools SNP 510983 510983 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold334 SAMTools SNP 510984 510984 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold334 SAMTools SNP 512595 512595 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold334 SAMTools SNP 512621 512621 43.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold334 SAMTools SNP 512647 512647 38.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold334 SAMTools SNP 513208 513208 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C136:86 scaffold334 SAMTools SNP 513244 513244 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold334 SAMTools SNP 513547 513547 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.061%2C0.00072%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold334 SAMTools SNP 513608 513608 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold334 SAMTools SNP 513629 513629 75 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C47%2C38%2C104%2C0%2C101:16 scaffold334 SAMTools SNP 513686 513686 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold334 SAMTools SNP 514042 514042 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold334 SAMTools SNP 514606 514606 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 514804 514804 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold334 SAMTools SNP 514852 514852 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 516497 516497 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0058%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C112:77 scaffold334 SAMTools SNP 516830 516830 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold334 SAMTools SNP 519237 519237 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 519786 519786 99.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C21%2C0:39 scaffold334 SAMTools SNP 520110 520110 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold334 SAMTools SNP 520155 520155 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold334 SAMTools SNP 521113 521113 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 521164 521164 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 524028 524028 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 524109 524109 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 524591 524591 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold334 SAMTools SNP 524716 524716 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold334 SAMTools SNP 524739 524739 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold334 SAMTools SNP 524743 524743 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 524836 524836 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold334 SAMTools SNP 524980 524980 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold334 SAMTools SNP 525267 525267 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold334 SAMTools SNP 525639 525639 42.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold334 SAMTools SNP 532295 532295 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D9.53%3BPV4%3D1%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C90:37 scaffold334 SAMTools SNP 535594 535594 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold334 SAMTools SNP 535645 535645 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 535656 535656 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 536390 536390 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 538269 538269 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold334 SAMTools SNP 538696 538696 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold334 SAMTools SNP 540077 540077 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 540219 540219 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 542413 542413 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 543055 543055 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 543085 543085 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold334 SAMTools SNP 543265 543265 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold334 SAMTools SNP 543291 543291 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold334 SAMTools SNP 543795 543795 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold334 SAMTools SNP 545588 545588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold334 SAMTools SNP 545765 545765 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold334 SAMTools SNP 546861 546861 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold334 SAMTools SNP 548846 548846 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold334 SAMTools SNP 548887 548887 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold334 SAMTools SNP 548940 548940 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold334 SAMTools SNP 549060 549060 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C127:58 scaffold334 SAMTools SNP 549066 549066 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold334 SAMTools SNP 549924 549924 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold334 SAMTools SNP 551455 551455 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 555660 555660 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold334 SAMTools SNP 555926 555926 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.025%2C0.0022%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold334 SAMTools SNP 555939 555939 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold334 SAMTools SNP 555959 555959 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold334 SAMTools SNP 556280 556280 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold334 SAMTools SNP 560036 560036 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C245:99 scaffold334 SAMTools SNP 560186 560186 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold334 SAMTools SNP 560851 560851 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 560881 560881 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C254:99 scaffold334 SAMTools SNP 560910 560910 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold334 SAMTools SNP 560929 560929 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C217:99 scaffold334 SAMTools SNP 564802 564802 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold334 SAMTools SNP 565639 565639 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold334 SAMTools SNP 578443 578443 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.19%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold334 SAMTools SNP 614765 614765 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold334 SAMTools SNP 614873 614873 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold334 SAMTools SNP 614876 614876 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C0.2%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold334 SAMTools SNP 616659 616659 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.45%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C71:74 scaffold334 SAMTools SNP 616680 616680 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C69:72 scaffold334 SAMTools SNP 616915 616915 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold334 SAMTools SNP 619346 619346 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold334 SAMTools SNP 619385 619385 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold334 SAMTools SNP 619730 619730 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.028%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold334 SAMTools SNP 621205 621205 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 621288 621288 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold334 SAMTools SNP 623663 623663 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C9%3BMQ%3D49%3BFQ%3D163%3BPV4%3D1%2C1%2C0.19%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C192:99 scaffold334 SAMTools SNP 623672 623672 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D47%3BFQ%3D105%3BPV4%3D0.17%2C0.42%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C160:99 scaffold334 SAMTools SNP 623679 623679 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C0.25%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C77:78 scaffold334 SAMTools SNP 624174 624174 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold334 SAMTools SNP 624194 624194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold334 SAMTools SNP 624326 624326 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold334 SAMTools SNP 624562 624562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 627720 627720 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C109%2C101%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 628401 628401 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold334 SAMTools SNP 628781 628781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold334 SAMTools SNP 628915 628915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold334 SAMTools SNP 628946 628946 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C84%2C5%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 628952 628952 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C69%2C7%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 629302 629302 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 629377 629377 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D129%3BPV4%3D8.7e-05%2C0.056%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold334 SAMTools SNP 629587 629587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 629646 629646 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.36%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C228:99 scaffold334 SAMTools SNP 629703 629703 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C36%2C0:68 scaffold334 SAMTools SNP 630161 630161 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold334 SAMTools SNP 632297 632297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold334 SAMTools SNP 632309 632309 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.084%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold334 SAMTools SNP 632474 632474 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold334 SAMTools SNP 632501 632501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold334 SAMTools SNP 637085 637085 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.08%3BPV4%3D0.33%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C32:35 scaffold334 SAMTools SNP 637702 637702 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold334 SAMTools SNP 637818 637818 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00056%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold334 SAMTools SNP 638028 638028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold334 SAMTools SNP 638040 638040 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold334 SAMTools SNP 639034 639034 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold334 SAMTools SNP 641316 641316 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold334 SAMTools SNP 641790 641790 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C32%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.57%2C4.2e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold334 SAMTools SNP 648739 648739 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 648844 648844 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 648859 648859 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold334 SAMTools SNP 651124 651124 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold334 SAMTools SNP 660571 660571 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.073%2C0.0013%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold334 SAMTools SNP 660621 660621 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C3%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold334 SAMTools SNP 661293 661293 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold334 SAMTools SNP 661647 661647 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.012%2C0.0005%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold334 SAMTools SNP 661650 661650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 661652 661652 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.033%2C0.062%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold334 SAMTools SNP 662954 662954 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C35%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 663243 663243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C41%2C2%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1.7e-12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 663463 663463 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold334 SAMTools SNP 663469 663469 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold334 SAMTools SNP 663508 663508 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.067%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C5:8 scaffold334 SAMTools SNP 663526 663526 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold334 SAMTools SNP 664248 664248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold334 SAMTools SNP 665340 665340 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 665385 665385 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold334 SAMTools SNP 665771 665771 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 665774 665774 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 667720 667720 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C4.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold334 SAMTools SNP 668482 668482 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C36%3BMQ%3D49%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C235%2C0:99 scaffold334 SAMTools SNP 668543 668543 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C86%2C13%2C27%3BMQ%3D49%3BFQ%3D114%3BPV4%3D0.85%2C1.2e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold334 SAMTools SNP 668563 668563 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C84%2C17%2C20%3BMQ%3D49%3BFQ%3D66%3BPV4%3D0.013%2C6.3e-73%2C0.5%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold334 SAMTools SNP 669302 669302 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold334 SAMTools SNP 669919 669919 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold334 SAMTools SNP 671531 671531 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold334 SAMTools SNP 671585 671585 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C11%2C29%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.2%2C1.4e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold334 SAMTools SNP 671802 671802 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C24%2C0:45 scaffold334 SAMTools SNP 673640 673640 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold334 SAMTools SNP 673687 673687 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 673934 673934 37.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold334 SAMTools SNP 674030 674030 68.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold334 SAMTools SNP 674333 674333 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C48%2C0:93 scaffold334 SAMTools SNP 674384 674384 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C24%2C0:45 scaffold334 SAMTools SNP 674666 674666 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold334 SAMTools SNP 675076 675076 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold334 SAMTools SNP 675180 675180 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C156:60 scaffold334 SAMTools SNP 676692 676692 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.15%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C164:99 scaffold334 SAMTools SNP 676710 676710 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C240:99 scaffold334 SAMTools SNP 676761 676761 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold334 SAMTools SNP 676772 676772 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold334 SAMTools SNP 676796 676796 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 677657 677657 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.014%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold334 SAMTools SNP 678014 678014 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold334 SAMTools SNP 678059 678059 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold334 SAMTools SNP 678913 678913 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C182:55 scaffold334 SAMTools SNP 679196 679196 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.27%2C3.1e-11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C224:50 scaffold334 SAMTools SNP 679267 679267 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C57%2C0:99 scaffold334 SAMTools SNP 682710 682710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C32%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold334 SAMTools SNP 683547 683547 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold334 SAMTools SNP 683604 683604 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold334 SAMTools SNP 683625 683625 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold334 SAMTools SNP 684239 684239 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold334 SAMTools SNP 684254 684254 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D38%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.18%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold334 SAMTools SNP 684674 684674 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C7%2C2%3BMQ%3D31%3BFQ%3D132%3BPV4%3D0.61%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C165:99 scaffold334 SAMTools SNP 685019 685019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C19%2C26%3BMQ%3D37%3BFQ%3D183%3BPV4%3D0.053%2C0.38%2C0.026%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold334 SAMTools SNP 685284 685284 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold334 SAMTools SNP 685524 685524 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold334 SAMTools SNP 685558 685558 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold334 SAMTools SNP 686368 686368 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold334 SAMTools SNP 686901 686901 198 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C28%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D9e-05%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold334 SAMTools SNP 687851 687851 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C25%2C8%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.46%2C1.5e-31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold334 SAMTools SNP 694266 694266 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold334 SAMTools SNP 710380 710380 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold334 SAMTools SNP 710910 710910 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold334 SAMTools SNP 754733 754733 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold334 SAMTools SNP 761438 761438 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold334 SAMTools SNP 762592 762592 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold334 SAMTools SNP 764766 764766 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold334 SAMTools SNP 768337 768337 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 770733 770733 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold334 SAMTools SNP 771006 771006 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 773131 773131 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 776024 776024 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold334 SAMTools SNP 777676 777676 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold334 SAMTools SNP 777697 777697 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C66%2C0:99 scaffold334 SAMTools SNP 778013 778013 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C32%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C160%2C0:99 scaffold334 SAMTools SNP 779745 779745 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold334 SAMTools SNP 786054 786054 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 786285 786285 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold334 SAMTools SNP 786356 786356 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold334 SAMTools SNP 791381 791381 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C72%2C0:99 scaffold334 SAMTools SNP 791549 791549 3.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold334 SAMTools SNP 793022 793022 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold334 SAMTools SNP 800723 800723 116 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold334 SAMTools SNP 815953 815953 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 887586 887586 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold334 SAMTools SNP 897410 897410 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 913390 913390 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold334 SAMTools SNP 917778 917778 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 917864 917864 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 958026 958026 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 958916 958916 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold334 SAMTools SNP 958977 958977 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 985017 985017 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 985065 985065 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 986357 986357 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 986688 986688 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold334 SAMTools SNP 1002271 1002271 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold334 SAMTools SNP 1055172 1055172 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold334 SAMTools SNP 1055522 1055522 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 3987 3987 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold335 SAMTools SNP 3991 3991 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold335 SAMTools SNP 5314 5314 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C33%2C0:63 scaffold335 SAMTools SNP 14172 14172 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold335 SAMTools SNP 16496 16496 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold335 SAMTools SNP 19255 19255 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold335 SAMTools SNP 19411 19411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 20928 20928 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 21621 21621 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C33%2C0:63 scaffold335 SAMTools SNP 22183 22183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 22413 22413 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold335 SAMTools SNP 22463 22463 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold335 SAMTools SNP 22690 22690 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C171%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 22768 22768 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C49%2C95%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 23290 23290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 24353 24353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C606%2C43%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 24384 24384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D737%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D319%2C192%2C109%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 25236 25236 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C310%2C0%2C100%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.052%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold335 SAMTools SNP 25251 25251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C375%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 25399 25399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 25468 25468 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 25469 25469 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C179:99 scaffold335 SAMTools SNP 26348 26348 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 29447 29447 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C49%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold335 SAMTools SNP 29904 29904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold335 SAMTools SNP 29907 29907 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 29916 29916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold335 SAMTools SNP 71134 71134 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold335 SAMTools SNP 71156 71156 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold335 SAMTools SNP 72045 72045 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold335 SAMTools SNP 73590 73590 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 75772 75772 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold335 SAMTools SNP 76129 76129 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold335 SAMTools SNP 82018 82018 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold335 SAMTools SNP 87273 87273 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 87330 87330 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold335 SAMTools SNP 96137 96137 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C142%2C4%2C193%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.084%2C1.9e-230%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold335 SAMTools SNP 96329 96329 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.46%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C234:91 scaffold335 SAMTools SNP 99352 99352 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C8%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold335 SAMTools SNP 100018 100018 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.21%2C8.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold335 SAMTools SNP 100025 100025 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.21%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold335 SAMTools SNP 100318 100318 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold335 SAMTools SNP 100343 100343 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold335 SAMTools SNP 100364 100364 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold335 SAMTools SNP 100382 100382 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold335 SAMTools SNP 100922 100922 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold335 SAMTools SNP 100933 100933 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold335 SAMTools SNP 103472 103472 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 105626 105626 215 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C7:63 scaffold335 SAMTools SNP 107271 107271 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold335 SAMTools SNP 107272 107272 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold335 SAMTools SNP 107293 107293 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C10%2C15%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.03%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold335 SAMTools SNP 109907 109907 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.003%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold335 SAMTools SNP 109936 109936 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C15%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00066%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold335 SAMTools SNP 109961 109961 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold335 SAMTools SNP 109964 109964 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C18%2C0:33 scaffold335 SAMTools SNP 110048 110048 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold335 SAMTools SNP 110057 110057 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold335 SAMTools SNP 110063 110063 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C124:99 scaffold335 SAMTools SNP 110645 110645 75.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C18%2C0:33 scaffold335 SAMTools SNP 110684 110684 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold335 SAMTools SNP 111057 111057 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold335 SAMTools SNP 112281 112281 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C4%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.00053%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold335 SAMTools SNP 112796 112796 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold335 SAMTools SNP 112841 112841 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.14%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold335 SAMTools SNP 113056 113056 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.64%2C5.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold335 SAMTools SNP 113239 113239 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C32%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold335 SAMTools SNP 114529 114529 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C63%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold335 SAMTools SNP 128864 128864 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold335 SAMTools SNP 130008 130008 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold335 SAMTools SNP 170624 170624 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.076%2C0.059%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C180:80 scaffold335 SAMTools SNP 171289 171289 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.2%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C124:99 scaffold335 SAMTools SNP 172578 172578 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.0031%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold335 SAMTools SNP 174660 174660 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold335 SAMTools SNP 177356 177356 64.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold335 SAMTools SNP 183174 183174 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold335 SAMTools SNP 184355 184355 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold335 SAMTools SNP 185365 185365 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.077%2C0.21%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold335 SAMTools SNP 185368 185368 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C0.23%2C1%2C6.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold335 SAMTools SNP 185784 185784 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold335 SAMTools SNP 185791 185791 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold335 SAMTools SNP 186206 186206 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold335 SAMTools SNP 186462 186462 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 186798 186798 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold335 SAMTools SNP 187137 187137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold335 SAMTools SNP 187176 187176 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold335 SAMTools SNP 187183 187183 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.22%2C0.0051%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold335 SAMTools SNP 187271 187271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold335 SAMTools SNP 191457 191457 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold335 SAMTools SNP 192012 192012 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.33%2C0.0012%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold335 SAMTools SNP 192243 192243 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C25%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C240:99 scaffold335 SAMTools SNP 195357 195357 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0068%2C1.2e-15%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold335 SAMTools SNP 196304 196304 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.33%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold335 SAMTools SNP 196451 196451 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.12%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold335 SAMTools SNP 196791 196791 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 199747 199747 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 199825 199825 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold335 SAMTools SNP 203114 203114 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold335 SAMTools SNP 203117 203117 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold335 SAMTools SNP 203484 203484 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold335 SAMTools SNP 203487 203487 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold335 SAMTools SNP 205167 205167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold335 SAMTools SNP 205345 205345 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.017%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold335 SAMTools SNP 205896 205896 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold335 SAMTools SNP 205915 205915 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold335 SAMTools SNP 206566 206566 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold335 SAMTools SNP 206583 206583 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold335 SAMTools SNP 206999 206999 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.019%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C191:59 scaffold335 SAMTools SNP 207512 207512 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 207633 207633 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 207671 207671 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold335 SAMTools SNP 208007 208007 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold335 SAMTools SNP 208779 208779 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold335 SAMTools SNP 210034 210034 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 211958 211958 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.22%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C185:57 scaffold335 SAMTools SNP 212479 212479 30.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold335 SAMTools SNP 213657 213657 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D48%3BPV4%3D9.3e-05%2C1.2e-09%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold335 SAMTools SNP 213682 213682 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C31%2C5%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold335 SAMTools SNP 213700 213700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 214029 214029 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 214160 214160 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C25%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold335 SAMTools SNP 214260 214260 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 214539 214539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C14%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 214758 214758 222 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0%2C255%2C255%2C253:99 scaffold335 SAMTools SNP 214818 214818 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C22%2C51%2C21%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.86%2C9.5e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold335 SAMTools SNP 214884 214884 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 215142 215142 28.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold335 SAMTools SNP 215306 215306 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C3%2C7%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C228:99 scaffold335 SAMTools SNP 215340 215340 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C30%2C7%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.027%2C3.1e-42%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold335 SAMTools SNP 215640 215640 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold335 SAMTools SNP 216134 216134 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C45%2C22%2C22%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.078%2C1.8e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold335 SAMTools SNP 216420 216420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 216426 216426 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold335 SAMTools SNP 216590 216590 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold335 SAMTools SNP 216632 216632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C9%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold335 SAMTools SNP 216695 216695 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 217677 217677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold335 SAMTools SNP 217859 217859 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C24%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 217862 217862 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C53%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.48%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 217874 217874 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C56%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 218117 218117 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C25%2C55%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 218151 218151 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C29%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 218313 218313 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0394%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.054%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C27:30 scaffold335 SAMTools SNP 218379 218379 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C108%2C2%2C34%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold335 SAMTools SNP 218574 218574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold335 SAMTools SNP 218583 218583 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold335 SAMTools SNP 218625 218625 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold335 SAMTools SNP 218784 218784 178 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold335 SAMTools SNP 220915 220915 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold335 SAMTools SNP 222129 222129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C44%2C20%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 222478 222478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C20%2C58%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 223888 223888 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.097%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold335 SAMTools SNP 225107 225107 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold335 SAMTools SNP 227247 227247 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold335 SAMTools SNP 227313 227313 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C42%2C0:81 scaffold335 SAMTools SNP 227403 227403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold335 SAMTools SNP 227433 227433 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold335 SAMTools SNP 227681 227681 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold335 SAMTools SNP 227714 227714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold335 SAMTools SNP 229611 229611 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 230191 230191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 230205 230205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 231719 231719 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold335 SAMTools SNP 232558 232558 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 233852 233852 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold335 SAMTools SNP 233876 233876 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold335 SAMTools SNP 234861 234861 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C0.0046%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C214:99 scaffold335 SAMTools SNP 235534 235534 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.15%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 235758 235758 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold335 SAMTools SNP 236320 236320 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C16%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold335 SAMTools SNP 236335 236335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold335 SAMTools SNP 236752 236752 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold335 SAMTools SNP 236779 236779 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold335 SAMTools SNP 237757 237757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold335 SAMTools SNP 237930 237930 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold335 SAMTools SNP 238328 238328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 239519 239519 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold335 SAMTools SNP 241234 241234 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C45%2C0:87 scaffold335 SAMTools SNP 241338 241338 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold335 SAMTools SNP 241408 241408 17.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold335 SAMTools SNP 242856 242856 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.44%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C156:33 scaffold335 SAMTools SNP 243129 243129 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C6%2C24%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.1%2C1e-33%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold335 SAMTools SNP 243414 243414 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C43%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C238%2C0:99 scaffold335 SAMTools SNP 243713 243713 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C0%2C17%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D5.8e-12%2C7.1e-32%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold335 SAMTools SNP 243819 243819 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C8%2C21%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C2.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold335 SAMTools SNP 244050 244050 81.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold335 SAMTools SNP 244110 244110 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C21%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.19%2C7.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold335 SAMTools SNP 244185 244185 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C16%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.037%2C2.8e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold335 SAMTools SNP 244598 244598 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold335 SAMTools SNP 244652 244652 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C248:99 scaffold335 SAMTools SNP 245419 245419 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold335 SAMTools SNP 245450 245450 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold335 SAMTools SNP 245994 245994 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C182:99 scaffold335 SAMTools SNP 246058 246058 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C172:99 scaffold335 SAMTools SNP 246112 246112 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold335 SAMTools SNP 246815 246815 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold335 SAMTools SNP 247807 247807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C14%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold335 SAMTools SNP 248574 248574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C73%2C4%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C3.2e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 248853 248853 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C10%2C15%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.16%2C1.2e-34%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold335 SAMTools SNP 249189 249189 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0011%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold335 SAMTools SNP 249941 249941 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C19%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold335 SAMTools SNP 250007 250007 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.055%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold335 SAMTools SNP 255556 255556 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C10%2C22%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.38%2C2.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold335 SAMTools SNP 256437 256437 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold335 SAMTools SNP 256455 256455 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold335 SAMTools SNP 256812 256812 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C132:99 scaffold335 SAMTools SNP 256830 256830 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.049%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold335 SAMTools SNP 257043 257043 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold335 SAMTools SNP 257121 257121 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold335 SAMTools SNP 257334 257334 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.21%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold335 SAMTools SNP 257670 257670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold335 SAMTools SNP 257700 257700 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold335 SAMTools SNP 258394 258394 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold335 SAMTools SNP 258420 258420 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold335 SAMTools SNP 258848 258848 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold335 SAMTools SNP 258873 258873 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold335 SAMTools SNP 259900 259900 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold335 SAMTools SNP 259906 259906 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold335 SAMTools SNP 259981 259981 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C9%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold335 SAMTools SNP 263279 263279 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold335 SAMTools SNP 271267 271267 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold335 SAMTools SNP 271333 271333 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold335 SAMTools SNP 279517 279517 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4249%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D41%2C0%2C2824%2C673%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.00038%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold335 SAMTools SNP 281286 281286 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7861%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1176%2C2943%2C1257%2C2481%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-06%2C4.7e-29%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 283078 283078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4560%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2285%2C1%2C2274%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 287107 287107 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold335 SAMTools SNP 287149 287149 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 294636 294636 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C0.0051%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold335 SAMTools SNP 294923 294923 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold335 SAMTools SNP 294971 294971 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C184:99 scaffold335 SAMTools SNP 295204 295204 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.59%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold335 SAMTools SNP 295655 295655 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.015%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold335 SAMTools SNP 295658 295658 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 297157 297157 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C5.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold335 SAMTools SNP 297331 297331 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C189:99 scaffold335 SAMTools SNP 298964 298964 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 301029 301029 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.33%2C0.00014%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C82:55 scaffold335 SAMTools SNP 304489 304489 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold335 SAMTools SNP 304518 304518 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold335 SAMTools SNP 304534 304534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold335 SAMTools SNP 306356 306356 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold335 SAMTools SNP 308283 308283 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 308492 308492 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold335 SAMTools SNP 312547 312547 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold335 SAMTools SNP 314076 314076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C31%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 324475 324475 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C151:99 scaffold335 SAMTools SNP 324519 324519 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C2.7e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C228:80 scaffold335 SAMTools SNP 324576 324576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C5%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold335 SAMTools SNP 325377 325377 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C28%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 327294 327294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 327318 327318 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C18%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold335 SAMTools SNP 327767 327767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold335 SAMTools SNP 329636 329636 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D49%3BFQ%3D19.1%3BPV4%3D0.53%2C0.0031%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold335 SAMTools SNP 329822 329822 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C49%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 333942 333942 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C8%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C160%2C0:99 scaffold335 SAMTools SNP 334658 334658 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.64%2C9.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold335 SAMTools SNP 336488 336488 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 336961 336961 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 337020 337020 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C35%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold335 SAMTools SNP 337444 337444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold335 SAMTools SNP 337480 337480 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C36%2C0:69 scaffold335 SAMTools SNP 338358 338358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold335 SAMTools SNP 338374 338374 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold335 SAMTools SNP 357255 357255 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold335 SAMTools SNP 358381 358381 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold335 SAMTools SNP 386601 386601 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.093%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 387604 387604 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.37%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C205:99 scaffold335 SAMTools SNP 387652 387652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 387706 387706 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 388384 388384 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold335 SAMTools SNP 388501 388501 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold335 SAMTools SNP 388507 388507 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold335 SAMTools SNP 388849 388849 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.61%2C0.26%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold335 SAMTools SNP 389260 389260 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0012%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C234:53 scaffold335 SAMTools SNP 389267 389267 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold335 SAMTools SNP 389702 389702 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold335 SAMTools SNP 389714 389714 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold335 SAMTools SNP 389804 389804 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold335 SAMTools SNP 389829 389829 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.36%2C0.032%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold335 SAMTools SNP 390271 390271 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.41%2C6.4e-09%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold335 SAMTools SNP 390445 390445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold335 SAMTools SNP 390460 390460 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold335 SAMTools SNP 419315 419315 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 429221 429221 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 430949 430949 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold335 SAMTools SNP 430981 430981 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold335 SAMTools SNP 433018 433018 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold335 SAMTools SNP 433211 433211 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold335 SAMTools SNP 434655 434655 90.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C12%2C0:21 scaffold335 SAMTools SNP 446899 446899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold335 SAMTools SNP 446912 446912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold335 SAMTools SNP 450095 450095 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 452222 452222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 452226 452226 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold335 SAMTools SNP 453108 453108 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold335 SAMTools SNP 453111 453111 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold335 SAMTools SNP 453242 453242 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 453276 453276 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 454523 454523 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold335 SAMTools SNP 456165 456165 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C252:99 scaffold335 SAMTools SNP 456217 456217 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold335 SAMTools SNP 456453 456453 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D53%3BPV4%3D6.7e-05%2C2.6e-05%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold335 SAMTools SNP 456644 456644 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold335 SAMTools SNP 462552 462552 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 462559 462559 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold335 SAMTools SNP 469345 469345 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold335 SAMTools SNP 469746 469746 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold335 SAMTools SNP 469903 469903 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.48%2C6.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C197:89 scaffold335 SAMTools SNP 470224 470224 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C21%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.19%2C5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C135:99 scaffold335 SAMTools SNP 473173 473173 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 1060 1060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 73331 73331 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold336 SAMTools SNP 113953 113953 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C63%2C0:99 scaffold336 SAMTools SNP 114120 114120 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C24%2C0:45 scaffold336 SAMTools SNP 121455 121455 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold336 SAMTools SNP 121540 121540 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold336 SAMTools SNP 122790 122790 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.046%2C0.2%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 122927 122927 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold336 SAMTools SNP 138950 138950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C75%2C20%2C61%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.72%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 139820 139820 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C0%2C15%3BMQ%3D46%3BFQ%3D136%3BPV4%3D0.055%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold336 SAMTools SNP 142092 142092 68.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold336 SAMTools SNP 143873 143873 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C0%2C4%3BMQ%3D42%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold336 SAMTools SNP 144107 144107 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C9%3BMQ%3D33%3BFQ%3D76%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C103:99 scaffold336 SAMTools SNP 145931 145931 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C8%3BMQ%3D33%3BFQ%3D79%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C222:99 scaffold336 SAMTools SNP 147186 147186 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold336 SAMTools SNP 147213 147213 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold336 SAMTools SNP 148846 148846 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold336 SAMTools SNP 154423 154423 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold336 SAMTools SNP 154518 154518 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold336 SAMTools SNP 154963 154963 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold336 SAMTools SNP 155020 155020 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold336 SAMTools SNP 155071 155071 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold336 SAMTools SNP 155080 155080 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold336 SAMTools SNP 155351 155351 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold336 SAMTools SNP 155372 155372 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.11%2C0.4%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold336 SAMTools SNP 155414 155414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C17%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.56%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold336 SAMTools SNP 155760 155760 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold336 SAMTools SNP 155786 155786 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C17%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C177:99 scaffold336 SAMTools SNP 156257 156257 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.43%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C239:99 scaffold336 SAMTools SNP 156366 156366 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold336 SAMTools SNP 156375 156375 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.016%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold336 SAMTools SNP 156417 156417 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold336 SAMTools SNP 156928 156928 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold336 SAMTools SNP 156989 156989 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C15%2C7%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.22%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold336 SAMTools SNP 156991 156991 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C10%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.22%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold336 SAMTools SNP 159416 159416 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold336 SAMTools SNP 159420 159420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold336 SAMTools SNP 159486 159486 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C60%2C0:99 scaffold336 SAMTools SNP 159519 159519 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C30%2C0:57 scaffold336 SAMTools SNP 163212 163212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold336 SAMTools SNP 164908 164908 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 167289 167289 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.4%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold336 SAMTools SNP 167328 167328 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 167340 167340 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold336 SAMTools SNP 174054 174054 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C4%3BMQ%3D49%3BFQ%3D55%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold336 SAMTools SNP 174057 174057 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C4%3BMQ%3D49%3BFQ%3D55%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold336 SAMTools SNP 174095 174095 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D96.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C124:99 scaffold336 SAMTools SNP 192884 192884 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold336 SAMTools SNP 193226 193226 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold336 SAMTools SNP 195511 195511 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold336 SAMTools SNP 195541 195541 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold336 SAMTools SNP 195936 195936 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold336 SAMTools SNP 197943 197943 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C65%2C6%2C34%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.77%2C1.5e-36%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold336 SAMTools SNP 200555 200555 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.023%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold336 SAMTools SNP 201301 201301 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C74%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 201718 201718 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C60%2C6%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.011%2C1.3e-13%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold336 SAMTools SNP 202033 202033 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C35%2C9%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.28%2C5.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold336 SAMTools SNP 202066 202066 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.14%2C0.12%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold336 SAMTools SNP 202124 202124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C1%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 202425 202425 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C0%2C27%3BMQ%3D50%3BFQ%3D204%3BPV4%3D2.5e-10%2C1%2C1%2C2.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold336 SAMTools SNP 202438 202438 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C3%2C1%3BMQ%3D49%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold336 SAMTools SNP 202551 202551 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C4%2C1%3BMQ%3D49%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold336 SAMTools SNP 206062 206062 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C10%3BMQ%3D49%3BFQ%3D86%3BPV4%3D0.56%2C1%2C0.047%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold336 SAMTools SNP 206066 206066 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold336 SAMTools SNP 206760 206760 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold336 SAMTools SNP 219749 219749 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold336 SAMTools SNP 221625 221625 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold336 SAMTools SNP 222984 222984 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold336 SAMTools SNP 223393 223393 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold336 SAMTools SNP 223455 223455 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold336 SAMTools SNP 225057 225057 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.59%2C0.026%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C246:99 scaffold336 SAMTools SNP 226317 226317 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold336 SAMTools SNP 226338 226338 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold336 SAMTools SNP 226356 226356 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold336 SAMTools SNP 226498 226498 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold336 SAMTools SNP 226519 226519 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold336 SAMTools SNP 233004 233004 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.18%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C223:30 scaffold336 SAMTools SNP 233060 233060 64.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold336 SAMTools SNP 233116 233116 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold336 SAMTools SNP 233527 233527 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 233653 233653 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 239170 239170 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold336 SAMTools SNP 239802 239802 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold336 SAMTools SNP 248563 248563 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C6e-08%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold336 SAMTools SNP 248655 248655 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00092%2C1e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold336 SAMTools SNP 250751 250751 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold336 SAMTools SNP 251527 251527 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C215:57 scaffold336 SAMTools SNP 253703 253703 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C0.13%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C201:99 scaffold336 SAMTools SNP 253706 253706 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.076%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C201:98 scaffold336 SAMTools SNP 254360 254360 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.15%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold336 SAMTools SNP 254390 254390 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.2%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold336 SAMTools SNP 255255 255255 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold336 SAMTools SNP 255273 255273 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold336 SAMTools SNP 255318 255318 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.4%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold336 SAMTools SNP 256157 256157 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0072%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold336 SAMTools SNP 257819 257819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 258320 258320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 258747 258747 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.67%2C0.078%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold336 SAMTools SNP 258762 258762 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C6%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold336 SAMTools SNP 262712 262712 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold336 SAMTools SNP 262801 262801 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold336 SAMTools SNP 263835 263835 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold336 SAMTools SNP 263952 263952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 270708 270708 224 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1755%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D235%2C79%2C91%2C15%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.022%2C0.0005%2C1%2C1.5e-94;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold336 SAMTools SNP 270762 270762 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2653%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1246%2C813%2C295%2C211%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold336 SAMTools SNP 278192 278192 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C66%2C50%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D2.2e-22%2C1%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold336 SAMTools SNP 279468 279468 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C12%2C59%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.27%2C1.9e-22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold336 SAMTools SNP 280078 280078 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 280549 280549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 280603 280603 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.56%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold336 SAMTools SNP 281564 281564 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.034%2C1e-09%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold336 SAMTools SNP 281980 281980 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 282013 282013 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold336 SAMTools SNP 282092 282092 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold336 SAMTools SNP 282097 282097 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold336 SAMTools SNP 282492 282492 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 282531 282531 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00073%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 282880 282880 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold336 SAMTools SNP 283466 283466 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.33%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold336 SAMTools SNP 283472 283472 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.31%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold336 SAMTools SNP 283667 283667 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold336 SAMTools SNP 284092 284092 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold336 SAMTools SNP 284263 284263 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold336 SAMTools SNP 284884 284884 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.051%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold336 SAMTools SNP 287045 287045 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold336 SAMTools SNP 290815 290815 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold336 SAMTools SNP 291123 291123 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold336 SAMTools SNP 291555 291555 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold336 SAMTools SNP 291562 291562 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.016%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C80:33 scaffold336 SAMTools SNP 292447 292447 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold336 SAMTools SNP 292968 292968 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold336 SAMTools SNP 293329 293329 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold336 SAMTools SNP 295155 295155 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1305%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D358%2C339%2C218%2C315%3BMQ%3D44%3BFQ%3D54%3BPV4%3D0.00028%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold336 SAMTools SNP 295200 295200 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1700%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C779%2C82%2C665%3BMQ%3D43%3BFQ%3D45%3BPV4%3D0.0076%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold336 SAMTools SNP 296180 296180 89 . . REF=N;ALT=G,C,T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C154%2C118%2C137%2C0%2C113%2C207%2C89%2C77%2C195:69 scaffold336 SAMTools SNP 303286 303286 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C25%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.2%2C4.7e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold336 SAMTools SNP 303444 303444 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C0%2C20%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C246:99 scaffold336 SAMTools SNP 318766 318766 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold336 SAMTools SNP 318812 318812 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold336 SAMTools SNP 318821 318821 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold337 SAMTools SNP 117491 117491 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold337 SAMTools SNP 125035 125035 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold337 SAMTools SNP 125356 125356 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold337 SAMTools SNP 267941 267941 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 267959 267959 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 268531 268531 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 271838 271838 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 271847 271847 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 272567 272567 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold337 SAMTools SNP 274385 274385 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C127:99 scaffold337 SAMTools SNP 275206 275206 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold337 SAMTools SNP 275215 275215 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold337 SAMTools SNP 286927 286927 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold337 SAMTools SNP 292575 292575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C0.44%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 294198 294198 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 294251 294251 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C10%2C17%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold337 SAMTools SNP 294569 294569 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold337 SAMTools SNP 294624 294624 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold337 SAMTools SNP 294671 294671 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold337 SAMTools SNP 295347 295347 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold337 SAMTools SNP 295353 295353 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold337 SAMTools SNP 314369 314369 94.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold337 SAMTools SNP 323177 323177 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C27%2C0:51 scaffold337 SAMTools SNP 323282 323282 47.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold337 SAMTools SNP 323332 323332 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold337 SAMTools SNP 324075 324075 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C21%2C0:39 scaffold337 SAMTools SNP 324539 324539 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold337 SAMTools SNP 324574 324574 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C190:99 scaffold337 SAMTools SNP 327702 327702 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C82:28 scaffold337 SAMTools SNP 333267 333267 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 333274 333274 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 333503 333503 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 369378 369378 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C5%2C11%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.085%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold337 SAMTools SNP 370120 370120 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C50%2C5%2C49%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 380879 380879 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.039%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold337 SAMTools SNP 382994 382994 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold337 SAMTools SNP 383007 383007 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C2.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold337 SAMTools SNP 384520 384520 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C90%2C26%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1.6e-13%2C1%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold337 SAMTools SNP 387376 387376 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold337 SAMTools SNP 392286 392286 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C191:47 scaffold337 SAMTools SNP 392577 392577 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D45.6%3BPV4%3D0.22%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C73:76 scaffold337 SAMTools SNP 395195 395195 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C15%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.61%2C1.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold337 SAMTools SNP 396459 396459 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.18%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold337 SAMTools SNP 398851 398851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold337 SAMTools SNP 398884 398884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C26%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold337 SAMTools SNP 399157 399157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 401024 401024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 401027 401027 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C59%2C2%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold337 SAMTools SNP 404684 404684 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold337 SAMTools SNP 409703 409703 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C4%2C43%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 410610 410610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C9%2C41%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.088%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 414708 414708 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold337 SAMTools SNP 420602 420602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 421021 421021 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 472691 472691 43.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold337 SAMTools SNP 474996 474996 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold337 SAMTools SNP 477978 477978 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold337 SAMTools SNP 494362 494362 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 497080 497080 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 507146 507146 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold337 SAMTools SNP 507158 507158 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold337 SAMTools SNP 518009 518009 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold337 SAMTools SNP 529057 529057 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold337 SAMTools SNP 535428 535428 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold337 SAMTools SNP 546614 546614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold337 SAMTools SNP 546641 546641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold337 SAMTools SNP 546668 546668 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold337 SAMTools SNP 546902 546902 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold337 SAMTools SNP 546959 546959 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 547034 547034 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold337 SAMTools SNP 547465 547465 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C7%2C0%3BMQ%3D48%3BFQ%3D94%3BPV4%3D1.1e-06%2C0.0017%2C0.0058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C243:99 scaffold337 SAMTools SNP 547499 547499 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D46%3BFQ%3D26%3BPV4%3D0.19%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold337 SAMTools SNP 547501 547501 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C4%3BMQ%3D45%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C153:99 scaffold337 SAMTools SNP 547525 547525 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold337 SAMTools SNP 548463 548463 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold337 SAMTools SNP 548494 548494 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold337 SAMTools SNP 548520 548520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 548704 548704 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold337 SAMTools SNP 550223 550223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold337 SAMTools SNP 550241 550241 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 550683 550683 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 550709 550709 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C132:99 scaffold337 SAMTools SNP 550710 550710 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold337 SAMTools SNP 551217 551217 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold337 SAMTools SNP 551352 551352 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold337 SAMTools SNP 551377 551377 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold337 SAMTools SNP 552127 552127 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C41%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C129%2C0:99 scaffold337 SAMTools SNP 552660 552660 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold337 SAMTools SNP 552680 552680 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C120:40 scaffold337 SAMTools SNP 552735 552735 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 553324 553324 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.66%2C0.42%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold337 SAMTools SNP 553340 553340 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold337 SAMTools SNP 553363 553363 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.55%2C0.23%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C245:99 scaffold337 SAMTools SNP 553384 553384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold337 SAMTools SNP 553622 553622 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.57%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold337 SAMTools SNP 553963 553963 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold337 SAMTools SNP 554686 554686 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold337 SAMTools SNP 555427 555427 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold337 SAMTools SNP 555521 555521 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 556097 556097 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold337 SAMTools SNP 556163 556163 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C27%2C0:51 scaffold337 SAMTools SNP 558706 558706 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold337 SAMTools SNP 558736 558736 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold337 SAMTools SNP 562336 562336 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold337 SAMTools SNP 562351 562351 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold337 SAMTools SNP 562630 562630 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold337 SAMTools SNP 597826 597826 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold337 SAMTools SNP 597847 597847 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold337 SAMTools SNP 597850 597850 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold337 SAMTools SNP 597865 597865 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C6%3BMQ%3D48%3BFQ%3D95%3BPV4%3D0.031%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold337 SAMTools SNP 597958 597958 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D48%3BFQ%3D102%3BPV4%3D0.14%2C0.001%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C171:99 scaffold337 SAMTools SNP 597976 597976 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D46%3BFQ%3D20.1%3BPV4%3D0.33%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C99:50 scaffold337 SAMTools SNP 597992 597992 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D20.1%3BPV4%3D1%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C130:50 scaffold337 SAMTools SNP 599039 599039 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C39:42 scaffold337 SAMTools SNP 599514 599514 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold337 SAMTools SNP 599827 599827 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0088%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold337 SAMTools SNP 599854 599854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0088%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold337 SAMTools SNP 602031 602031 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold337 SAMTools SNP 602070 602070 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 602534 602534 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold337 SAMTools SNP 602549 602549 170 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C33%2C12%2C198%2C0%2C192:39 scaffold337 SAMTools SNP 603863 603863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C32%2C44%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold337 SAMTools SNP 604481 604481 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C49%2C0%2C17%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.033%2C0.00039%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold337 SAMTools SNP 607402 607402 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 610209 610209 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D36.6%3BPV4%3D1%2C1.7e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C69:67 scaffold337 SAMTools SNP 610323 610323 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold337 SAMTools SNP 610393 610393 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold337 SAMTools SNP 610408 610408 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold337 SAMTools SNP 610582 610582 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold337 SAMTools SNP 610762 610762 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D35.5%3BPV4%3D1%2C9.2e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C63:65 scaffold337 SAMTools SNP 610876 610876 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold337 SAMTools SNP 610900 610900 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold337 SAMTools SNP 611297 611297 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold337 SAMTools SNP 611453 611453 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C5%2C11%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.5%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 620959 620959 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold337 SAMTools SNP 620965 620965 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold337 SAMTools SNP 621031 621031 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold337 SAMTools SNP 621052 621052 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.39%2C2.4e-14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C235:85 scaffold337 SAMTools SNP 621085 621085 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 621091 621091 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 622740 622740 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold337 SAMTools SNP 622749 622749 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 624028 624028 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 624064 624064 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 625590 625590 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 626520 626520 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0015%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold337 SAMTools SNP 626636 626636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold337 SAMTools SNP 627965 627965 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold337 SAMTools SNP 627977 627977 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold337 SAMTools SNP 628001 628001 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 628267 628267 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 629608 629608 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold337 SAMTools SNP 629610 629610 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold337 SAMTools SNP 629627 629627 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.35%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold337 SAMTools SNP 629645 629645 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C7%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.013%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold337 SAMTools SNP 630021 630021 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold337 SAMTools SNP 631821 631821 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C230:66 scaffold337 SAMTools SNP 631837 631837 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.24%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold337 SAMTools SNP 631839 631839 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.17%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold337 SAMTools SNP 631859 631859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold337 SAMTools SNP 632259 632259 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold337 SAMTools SNP 632385 632385 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 633758 633758 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.5%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold337 SAMTools SNP 633782 633782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold337 SAMTools SNP 633797 633797 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold337 SAMTools SNP 650820 650820 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold337 SAMTools SNP 652736 652736 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 653395 653395 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 653728 653728 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold337 SAMTools SNP 653766 653766 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 655703 655703 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 655792 655792 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C27%2C0:51 scaffold337 SAMTools SNP 655855 655855 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold337 SAMTools SNP 656500 656500 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 698824 698824 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 700974 700974 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold337 SAMTools SNP 726199 726199 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold337 SAMTools SNP 726605 726605 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold337 SAMTools SNP 727324 727324 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold337 SAMTools SNP 727383 727383 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold337 SAMTools SNP 727899 727899 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 727908 727908 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold337 SAMTools SNP 727921 727921 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold337 SAMTools SNP 728086 728086 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold337 SAMTools SNP 728087 728087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.45%2C0.022%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold337 SAMTools SNP 728143 728143 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.49%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold337 SAMTools SNP 728158 728158 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.55%2C3.1e-08%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold337 SAMTools SNP 729266 729266 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C35:38 scaffold337 SAMTools SNP 730284 730284 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C6:45 scaffold337 SAMTools SNP 730312 730312 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold337 SAMTools SNP 734020 734020 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C0%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold337 SAMTools SNP 736811 736811 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 736855 736855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold337 SAMTools SNP 737305 737305 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold337 SAMTools SNP 737660 737660 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.14%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C12:15 scaffold337 SAMTools SNP 737888 737888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold337 SAMTools SNP 739169 739169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold337 SAMTools SNP 739193 739193 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 739199 739199 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 739211 739211 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 741901 741901 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 758671 758671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold337 SAMTools SNP 759052 759052 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold337 SAMTools SNP 759136 759136 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold337 SAMTools SNP 759151 759151 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold337 SAMTools SNP 768610 768610 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold337 SAMTools SNP 770133 770133 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.41%2C6.6e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold337 SAMTools SNP 770164 770164 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C18%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold337 SAMTools SNP 770612 770612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold337 SAMTools SNP 770642 770642 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold337 SAMTools SNP 770795 770795 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.67%2C6.5e-16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold337 SAMTools SNP 780694 780694 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold337 SAMTools SNP 787295 787295 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 787334 787334 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 788332 788332 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold337 SAMTools SNP 789382 789382 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold337 SAMTools SNP 790368 790368 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold337 SAMTools SNP 793160 793160 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 793490 793490 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold337 SAMTools SNP 804962 804962 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold337 SAMTools SNP 804983 804983 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold337 SAMTools SNP 805476 805476 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold337 SAMTools SNP 807971 807971 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold337 SAMTools SNP 808040 808040 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 808055 808055 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 808255 808255 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 823586 823586 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold337 SAMTools SNP 824216 824216 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold337 SAMTools SNP 824810 824810 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold337 SAMTools SNP 824817 824817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 824900 824900 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold337 SAMTools SNP 826103 826103 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold337 SAMTools SNP 896945 896945 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 901511 901511 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold337 SAMTools SNP 1043616 1043616 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold337 SAMTools SNP 1044513 1044513 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold337 SAMTools SNP 1046294 1046294 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 1047245 1047245 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.044%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C121:91 scaffold337 SAMTools SNP 1047896 1047896 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold337 SAMTools SNP 1049714 1049714 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1055848 1055848 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold337 SAMTools SNP 1056070 1056070 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold337 SAMTools SNP 1061593 1061593 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 1123307 1123307 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1131245 1131245 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold337 SAMTools SNP 1170551 1170551 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1265074 1265074 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 1265088 1265088 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 1265492 1265492 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C228:82 scaffold337 SAMTools SNP 1266002 1266002 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold337 SAMTools SNP 1267758 1267758 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C9%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold337 SAMTools SNP 1267915 1267915 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.56%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold337 SAMTools SNP 1268395 1268395 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1269277 1269277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold337 SAMTools SNP 1269412 1269412 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold337 SAMTools SNP 1270222 1270222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1270640 1270640 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1270667 1270667 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold337 SAMTools SNP 1270936 1270936 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold337 SAMTools SNP 1271517 1271517 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 1272694 1272694 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold337 SAMTools SNP 1272695 1272695 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold337 SAMTools SNP 1288562 1288562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1293192 1293192 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C31%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1293951 1293951 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C34%2C17%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.037%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1294067 1294067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C31%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold337 SAMTools SNP 1294768 1294768 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C21%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold337 SAMTools SNP 1295125 1295125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C22%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold337 SAMTools SNP 1295418 1295418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C9%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold337 SAMTools SNP 1296095 1296095 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C73%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold337 SAMTools SNP 1296145 1296145 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1296170 1296170 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold337 SAMTools SNP 1296673 1296673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.32%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1296986 1296986 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C26%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C3.4e-09%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1298433 1298433 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1300571 1300571 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C204:57 scaffold337 SAMTools SNP 1303442 1303442 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold337 SAMTools SNP 1303493 1303493 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.067%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold337 SAMTools SNP 1303619 1303619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D0.091%2C0.36%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold337 SAMTools SNP 1303638 1303638 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold337 SAMTools SNP 1303918 1303918 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C54%3BMQ%3D50%3BFQ%3D-211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold337 SAMTools SNP 1303933 1303933 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C48%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold337 SAMTools SNP 1304064 1304064 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0017%2C0.00014%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold337 SAMTools SNP 1304233 1304233 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C41%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.11%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold337 SAMTools SNP 1304254 1304254 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C41%2C4%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold337 SAMTools SNP 1304413 1304413 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C3%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold337 SAMTools SNP 1304641 1304641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1304783 1304783 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold337 SAMTools SNP 1304827 1304827 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1361910 1361910 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0138%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold337 SAMTools SNP 1362103 1362103 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold337 SAMTools SNP 1370188 1370188 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold337 SAMTools SNP 1393690 1393690 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold337 SAMTools SNP 1417597 1417597 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold337 SAMTools SNP 1417612 1417612 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold337 SAMTools SNP 1418410 1418410 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C69:36 scaffold337 SAMTools SNP 1447463 1447463 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C45%2C18%2C25%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.14%2C3.8e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold337 SAMTools SNP 1448243 1448243 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C1%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C221:62 scaffold337 SAMTools SNP 1448318 1448318 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C2.3e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold337 SAMTools SNP 1448384 1448384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold337 SAMTools SNP 1448398 1448398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C20%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold337 SAMTools SNP 1448441 1448441 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C21%2C13%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0079%2C0.45%2C1%2C3.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold337 SAMTools SNP 1450162 1450162 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C26%2C26%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1450217 1450217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C113%2C134%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1450379 1450379 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C90%2C17%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1450753 1450753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1451455 1451455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold337 SAMTools SNP 1451468 1451468 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold337 SAMTools SNP 1451840 1451840 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold337 SAMTools SNP 1453347 1453347 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C25%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.5%2C4.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold337 SAMTools SNP 1453393 1453393 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 1453637 1453637 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold337 SAMTools SNP 1453659 1453659 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold337 SAMTools SNP 1455767 1455767 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C63%2C32%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1466687 1466687 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold337 SAMTools SNP 1466692 1466692 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold337 SAMTools SNP 1466728 1466728 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold337 SAMTools SNP 1466788 1466788 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 1480494 1480494 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold337 SAMTools SNP 1480528 1480528 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold337 SAMTools SNP 1482310 1482310 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1483215 1483215 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold337 SAMTools SNP 1483231 1483231 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold337 SAMTools SNP 1483526 1483526 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1.8e-14%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C176:99 scaffold337 SAMTools SNP 1485323 1485323 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C23%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C126%2C0:99 scaffold337 SAMTools SNP 1485494 1485494 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C112:70 scaffold337 SAMTools SNP 1488546 1488546 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold337 SAMTools SNP 1492529 1492529 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00083%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C32:35 scaffold337 SAMTools SNP 1493829 1493829 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1494000 1494000 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold337 SAMTools SNP 1500467 1500467 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold337 SAMTools SNP 1507418 1507418 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C214:99 scaffold337 SAMTools SNP 1507495 1507495 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.0013%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1510021 1510021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold337 SAMTools SNP 1510154 1510154 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.00076%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold337 SAMTools SNP 1513195 1513195 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold337 SAMTools SNP 1513846 1513846 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D723%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C325%2C385%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1513873 1513873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D796%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C341%2C454%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1518522 1518522 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C12%2C0%3BMQ%3D38%3BFQ%3D12.3%3BPV4%3D0.011%2C4.1e-05%2C0.12%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold337 SAMTools SNP 1519401 1519401 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold337 SAMTools SNP 1519409 1519409 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C231:66 scaffold337 SAMTools SNP 1526349 1526349 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0046%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold337 SAMTools SNP 1527880 1527880 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C31%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1528526 1528526 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C219%2C12%2C232%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1530537 1530537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold337 SAMTools SNP 1535927 1535927 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold337 SAMTools SNP 1535981 1535981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold337 SAMTools SNP 1536629 1536629 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C54%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1536647 1536647 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C39%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.0043%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1536699 1536699 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C49%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1536786 1536786 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold337 SAMTools SNP 1537367 1537367 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C8%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold337 SAMTools SNP 1538731 1538731 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C48%2C0%2C27%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold337 SAMTools SNP 1538750 1538750 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C28%2C1%2C13%3BMQ%3D50%3BFQ%3D88%3BPV4%3D4.8e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold337 SAMTools SNP 1539139 1539139 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1539212 1539212 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold337 SAMTools SNP 1539466 1539466 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C14%2C26%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.038%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold337 SAMTools SNP 1539819 1539819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C17%2C40%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.43%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1539861 1539861 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold337 SAMTools SNP 1539936 1539936 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C34%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1540086 1540086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.16%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold337 SAMTools SNP 1540627 1540627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1540633 1540633 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C51%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.37%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1543299 1543299 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold337 SAMTools SNP 1545380 1545380 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C33%2C19%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1545977 1545977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold337 SAMTools SNP 1545998 1545998 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold337 SAMTools SNP 1546470 1546470 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold337 SAMTools SNP 1547638 1547638 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold337 SAMTools SNP 1552546 1552546 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold337 SAMTools SNP 1554356 1554356 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold337 SAMTools SNP 1555131 1555131 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold337 SAMTools SNP 1555329 1555329 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold337 SAMTools SNP 1555745 1555745 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold337 SAMTools SNP 1555893 1555893 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C105%2C0:99 scaffold337 SAMTools SNP 1556915 1556915 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold337 SAMTools SNP 1557720 1557720 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold337 SAMTools SNP 1558722 1558722 13.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold337 SAMTools SNP 1560848 1560848 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold337 SAMTools SNP 1560949 1560949 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold337 SAMTools SNP 1563469 1563469 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold337 SAMTools SNP 1607412 1607412 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold337 SAMTools SNP 1607675 1607675 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.6e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C110:40 scaffold338 SAMTools SNP 6400 6400 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold338 SAMTools SNP 18272 18272 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold338 SAMTools SNP 18294 18294 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C24%2C0:45 scaffold338 SAMTools SNP 18462 18462 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0079%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold338 SAMTools SNP 18916 18916 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold338 SAMTools SNP 65941 65941 8.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold338 SAMTools SNP 96868 96868 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold338 SAMTools SNP 103753 103753 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold338 SAMTools SNP 183996 183996 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold338 SAMTools SNP 184029 184029 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold338 SAMTools SNP 184048 184048 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold338 SAMTools SNP 184056 184056 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold338 SAMTools SNP 184488 184488 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C160:99 scaffold338 SAMTools SNP 184601 184601 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold338 SAMTools SNP 184756 184756 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold338 SAMTools SNP 184773 184773 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold338 SAMTools SNP 184809 184809 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold338 SAMTools SNP 184824 184824 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold338 SAMTools SNP 185663 185663 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold338 SAMTools SNP 185717 185717 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold338 SAMTools SNP 185816 185816 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold338 SAMTools SNP 185879 185879 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold338 SAMTools SNP 185972 185972 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C30%2C0:57 scaffold338 SAMTools SNP 186559 186559 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold338 SAMTools SNP 187162 187162 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold338 SAMTools SNP 199163 199163 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2056%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C234%2C870%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.58%2C1%2C0.4%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold338 SAMTools SNP 199187 199187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1740%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C7%2C1707%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C0.00025%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold338 SAMTools SNP 199289 199289 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C7%3BMQ%3D9%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C255%2C0:99 scaffold338 SAMTools SNP 199292 199292 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C280%2C9%3BMQ%3D9%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C255%2C0:99 scaffold338 SAMTools SNP 201206 201206 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold338 SAMTools SNP 201317 201317 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C142:62 scaffold338 SAMTools SNP 201470 201470 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D554%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D85.9%3BPV4%3D0.52%2C1.8e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C131:99 scaffold338 SAMTools SNP 201476 201476 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.52%2C4e-10%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C185:71 scaffold338 SAMTools SNP 205323 205323 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold338 SAMTools SNP 205339 205339 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold338 SAMTools SNP 205354 205354 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold338 SAMTools SNP 211442 211442 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.019%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold338 SAMTools SNP 212530 212530 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold338 SAMTools SNP 212563 212563 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold338 SAMTools SNP 213077 213077 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold338 SAMTools SNP 213098 213098 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.028%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold338 SAMTools SNP 214722 214722 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C21%2C44%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold338 SAMTools SNP 216920 216920 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C1%2C40%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C4.6e-38%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold338 SAMTools SNP 217739 217739 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C9%2C38%2C5%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.2%2C1%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold338 SAMTools SNP 217764 217764 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C287%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold338 SAMTools SNP 220193 220193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C161%2C275%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold338 SAMTools SNP 220231 220231 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold338 SAMTools SNP 220403 220403 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C103%2C22%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold338 SAMTools SNP 220902 220902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold338 SAMTools SNP 248251 248251 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C13%2C39%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1.1e-56%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold338 SAMTools SNP 249280 249280 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C6%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold338 SAMTools SNP 249304 249304 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C35%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold338 SAMTools SNP 252256 252256 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold338 SAMTools SNP 253367 253367 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C6.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold339 SAMTools SNP 454 454 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold339 SAMTools SNP 54317 54317 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold339 SAMTools SNP 57137 57137 4.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold339 SAMTools SNP 64585 64585 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold339 SAMTools SNP 79578 79578 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold339 SAMTools SNP 79588 79588 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold339 SAMTools SNP 80501 80501 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold339 SAMTools SNP 81058 81058 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.054%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C184:99 scaffold339 SAMTools SNP 81920 81920 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold339 SAMTools SNP 81926 81926 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold339 SAMTools SNP 82016 82016 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold339 SAMTools SNP 82028 82028 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold339 SAMTools SNP 82284 82284 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold339 SAMTools SNP 82330 82330 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold339 SAMTools SNP 82416 82416 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold339 SAMTools SNP 82687 82687 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold339 SAMTools SNP 82810 82810 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold339 SAMTools SNP 82996 82996 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C55%2C31%3BMQ%3D50%3BFQ%3D-239%3BPV4%3D1%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C212%2C0:99 scaffold339 SAMTools SNP 83433 83433 38.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold339 SAMTools SNP 83575 83575 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold339 SAMTools SNP 84034 84034 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold339 SAMTools SNP 84046 84046 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold339 SAMTools SNP 84426 84426 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold339 SAMTools SNP 84788 84788 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold339 SAMTools SNP 84824 84824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold339 SAMTools SNP 84974 84974 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold339 SAMTools SNP 85028 85028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold339 SAMTools SNP 85234 85234 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold339 SAMTools SNP 85279 85279 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold339 SAMTools SNP 85351 85351 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C18%2C0:33 scaffold339 SAMTools SNP 85369 85369 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C18%2C0:33 scaffold339 SAMTools SNP 85411 85411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold339 SAMTools SNP 88667 88667 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold339 SAMTools SNP 89015 89015 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C19%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C248:99 scaffold339 SAMTools SNP 89387 89387 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.053%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C234:99 scaffold339 SAMTools SNP 89429 89429 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold339 SAMTools SNP 89456 89456 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold339 SAMTools SNP 89701 89701 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold339 SAMTools SNP 90498 90498 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C207:99 scaffold339 SAMTools SNP 90528 90528 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C246:99 scaffold339 SAMTools SNP 90846 90846 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C16%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C179:99 scaffold339 SAMTools SNP 91771 91771 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold339 SAMTools SNP 91777 91777 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold339 SAMTools SNP 132304 132304 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold339 SAMTools SNP 142037 142037 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.6e-14%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C156:54 scaffold339 SAMTools SNP 142488 142488 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.4%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C77:79 scaffold339 SAMTools SNP 142641 142641 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold339 SAMTools SNP 143118 143118 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C21:24 scaffold339 SAMTools SNP 146947 146947 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold339 SAMTools SNP 146963 146963 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold339 SAMTools SNP 157869 157869 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold339 SAMTools SNP 157890 157890 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold34 SAMTools SNP 2090 2090 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 3355 3355 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold34 SAMTools SNP 3365 3365 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold34 SAMTools SNP 3958 3958 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold34 SAMTools SNP 3967 3967 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold34 SAMTools SNP 3976 3976 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.45%2C0.24%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C226:99 scaffold34 SAMTools SNP 4005 4005 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold34 SAMTools SNP 4008 4008 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold34 SAMTools SNP 6302 6302 4.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D25%3BFQ%3D-29%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C2%2C0:4 scaffold34 SAMTools SNP 6518 6518 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C29%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold34 SAMTools SNP 6562 6562 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C31%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold34 SAMTools SNP 6569 6569 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.56%2C0.0072%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold34 SAMTools SNP 6995 6995 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold34 SAMTools SNP 7712 7712 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.41%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold34 SAMTools SNP 7743 7743 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold34 SAMTools SNP 7832 7832 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C104:99 scaffold34 SAMTools SNP 12800 12800 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold34 SAMTools SNP 12814 12814 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold34 SAMTools SNP 14244 14244 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 19175 19175 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C43%2C46%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 19238 19238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C53%2C16%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 20502 20502 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold34 SAMTools SNP 23213 23213 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C144:99 scaffold34 SAMTools SNP 23214 23214 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C183:99 scaffold34 SAMTools SNP 25362 25362 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold34 SAMTools SNP 25921 25921 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 25969 25969 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold34 SAMTools SNP 26211 26211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold34 SAMTools SNP 26262 26262 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold34 SAMTools SNP 26635 26635 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold34 SAMTools SNP 26665 26665 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold34 SAMTools SNP 27660 27660 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold34 SAMTools SNP 27960 27960 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00047%2C1.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold34 SAMTools SNP 28018 28018 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold34 SAMTools SNP 28489 28489 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.0065%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold34 SAMTools SNP 28716 28716 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.14%2C0.098%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold34 SAMTools SNP 30175 30175 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C180:99 scaffold34 SAMTools SNP 30206 30206 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold34 SAMTools SNP 30210 30210 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.11%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold34 SAMTools SNP 30548 30548 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.41%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold34 SAMTools SNP 30972 30972 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold34 SAMTools SNP 31008 31008 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C42%2C0:81 scaffold34 SAMTools SNP 31499 31499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold34 SAMTools SNP 31502 31502 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold34 SAMTools SNP 31601 31601 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 31619 31619 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold34 SAMTools SNP 32888 32888 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold34 SAMTools SNP 32922 32922 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 37373 37373 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold34 SAMTools SNP 37993 37993 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 38049 38049 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C10%2C38%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C4.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 38541 38541 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 38577 38577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold34 SAMTools SNP 38714 38714 46.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C5%2C0:9 scaffold34 SAMTools SNP 39166 39166 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold34 SAMTools SNP 39862 39862 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold34 SAMTools SNP 39867 39867 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold34 SAMTools SNP 40134 40134 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.33%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold34 SAMTools SNP 50961 50961 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C8%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D0.56%2C3.7e-07%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold34 SAMTools SNP 58590 58590 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C0%2C18%2C0%3BMQ%3D28%3BFQ%3D92.9%3BPV4%3D1%2C1%2C1%2C3.6e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C120:99 scaffold34 SAMTools SNP 70468 70468 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold34 SAMTools SNP 70489 70489 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold34 SAMTools SNP 70679 70679 84.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C5%2C0%2C116%2C3%2C109:9 scaffold34 SAMTools SNP 81112 81112 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C0%3BMQ%3D21%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C255%2C0:99 scaffold34 SAMTools SNP 81230 81230 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold34 SAMTools SNP 81264 81264 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold34 SAMTools SNP 81329 81329 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold34 SAMTools SNP 81387 81387 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C9%3BMQ%3D35%3BFQ%3D21%3BPV4%3D0.022%2C1%2C0.018%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold34 SAMTools SNP 81401 81401 96.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D41%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C15:18 scaffold34 SAMTools SNP 88715 88715 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold34 SAMTools SNP 88745 88745 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold34 SAMTools SNP 92283 92283 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C13%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C9.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C222:71 scaffold34 SAMTools SNP 92663 92663 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C253:99 scaffold34 SAMTools SNP 96016 96016 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 96040 96040 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 96562 96562 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C15%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 97566 97566 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 97837 97837 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold34 SAMTools SNP 97839 97839 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold34 SAMTools SNP 99828 99828 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 99855 99855 53.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold34 SAMTools SNP 99969 99969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold34 SAMTools SNP 100362 100362 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold34 SAMTools SNP 100774 100774 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold34 SAMTools SNP 100921 100921 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 101625 101625 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.084%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold34 SAMTools SNP 101630 101630 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold34 SAMTools SNP 101646 101646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 101784 101784 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.52%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold34 SAMTools SNP 101805 101805 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold34 SAMTools SNP 102017 102017 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold34 SAMTools SNP 102222 102222 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold34 SAMTools SNP 102228 102228 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold34 SAMTools SNP 102345 102345 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.0031%2C7.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C180:99 scaffold34 SAMTools SNP 102527 102527 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold34 SAMTools SNP 111531 111531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 120178 120178 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold34 SAMTools SNP 120209 120209 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold34 SAMTools SNP 120416 120416 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold34 SAMTools SNP 120947 120947 19 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold34 SAMTools SNP 121219 121219 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold34 SAMTools SNP 122330 122330 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 166557 166557 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold34 SAMTools SNP 184322 184322 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold34 SAMTools SNP 186632 186632 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C36%2C0:62 scaffold34 SAMTools SNP 189034 189034 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 194982 194982 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold34 SAMTools SNP 195302 195302 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C15%2C0:27 scaffold34 SAMTools SNP 195340 195340 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold34 SAMTools SNP 199088 199088 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold34 SAMTools SNP 199276 199276 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold34 SAMTools SNP 200215 200215 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold34 SAMTools SNP 200328 200328 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 201173 201173 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 262171 262171 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.017%2C0.002%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold34 SAMTools SNP 266010 266010 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C1%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold34 SAMTools SNP 270147 270147 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.095%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold34 SAMTools SNP 277017 277017 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold34 SAMTools SNP 277163 277163 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold34 SAMTools SNP 278738 278738 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C39%2C0:75 scaffold34 SAMTools SNP 278832 278832 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.026%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold34 SAMTools SNP 280812 280812 14.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold34 SAMTools SNP 282585 282585 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold34 SAMTools SNP 284606 284606 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold34 SAMTools SNP 285431 285431 48.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold34 SAMTools SNP 289536 289536 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C155:39 scaffold34 SAMTools SNP 292012 292012 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold34 SAMTools SNP 319266 319266 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C8.7e-06%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C110:40 scaffold34 SAMTools SNP 360501 360501 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 360530 360530 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold34 SAMTools SNP 362599 362599 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C9.3e-07%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C29:32 scaffold34 SAMTools SNP 363139 363139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold34 SAMTools SNP 363285 363285 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold34 SAMTools SNP 363298 363298 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold34 SAMTools SNP 363515 363515 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold34 SAMTools SNP 364029 364029 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold34 SAMTools SNP 365908 365908 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold34 SAMTools SNP 365929 365929 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold34 SAMTools SNP 366049 366049 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold34 SAMTools SNP 366226 366226 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold34 SAMTools SNP 369460 369460 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold34 SAMTools SNP 369500 369500 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold34 SAMTools SNP 371991 371991 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold34 SAMTools SNP 372326 372326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold34 SAMTools SNP 375522 375522 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold34 SAMTools SNP 394828 394828 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold34 SAMTools SNP 398062 398062 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold34 SAMTools SNP 448578 448578 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C71:47 scaffold340 SAMTools SNP 329 329 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 374 374 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 417 417 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold340 SAMTools SNP 442 442 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold340 SAMTools SNP 649 649 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C0.27%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C32:35 scaffold340 SAMTools SNP 851 851 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold340 SAMTools SNP 14064 14064 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.52%2C0.0052%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C232:52 scaffold340 SAMTools SNP 14281 14281 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold340 SAMTools SNP 17402 17402 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C77:78 scaffold340 SAMTools SNP 17430 17430 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold340 SAMTools SNP 17674 17674 215 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.067%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C121:99 scaffold340 SAMTools SNP 18164 18164 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 18597 18597 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold340 SAMTools SNP 18672 18672 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold340 SAMTools SNP 22890 22890 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold340 SAMTools SNP 22896 22896 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold340 SAMTools SNP 26348 26348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold340 SAMTools SNP 26477 26477 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold340 SAMTools SNP 26522 26522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold340 SAMTools SNP 27597 27597 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold340 SAMTools SNP 27641 27641 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold340 SAMTools SNP 29033 29033 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.059%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold340 SAMTools SNP 32605 32605 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.034%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold340 SAMTools SNP 32624 32624 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0037%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold340 SAMTools SNP 32692 32692 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.54%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold340 SAMTools SNP 33680 33680 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.37%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 34774 34774 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold340 SAMTools SNP 35560 35560 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold340 SAMTools SNP 35884 35884 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold340 SAMTools SNP 36241 36241 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold340 SAMTools SNP 36295 36295 152 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D40%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C40%2C10%2C166%2C0%2C163:57 scaffold340 SAMTools SNP 36316 36316 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C1%3BMQ%3D40%3BFQ%3D30%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C209:60 scaffold340 SAMTools SNP 38674 38674 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold340 SAMTools SNP 38787 38787 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold340 SAMTools SNP 40858 40858 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold340 SAMTools SNP 41618 41618 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold340 SAMTools SNP 42287 42287 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold340 SAMTools SNP 42448 42448 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold340 SAMTools SNP 42768 42768 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D49%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold340 SAMTools SNP 42859 42859 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D49%3BFQ%3D19.1%3BPV4%3D1%2C0.0063%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C228:49 scaffold340 SAMTools SNP 43539 43539 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C210:99 scaffold340 SAMTools SNP 44001 44001 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold340 SAMTools SNP 45948 45948 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold340 SAMTools SNP 45953 45953 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold340 SAMTools SNP 49395 49395 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C104:57 scaffold340 SAMTools SNP 49542 49542 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold340 SAMTools SNP 50388 50388 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold340 SAMTools SNP 50751 50751 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold340 SAMTools SNP 50760 50760 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold340 SAMTools SNP 50787 50787 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold340 SAMTools SNP 50798 50798 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold340 SAMTools SNP 51726 51726 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C18%2C0:33 scaffold340 SAMTools SNP 53367 53367 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C114%2C0:99 scaffold340 SAMTools SNP 53491 53491 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold340 SAMTools SNP 54034 54034 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C10%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D3.2e-05%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold340 SAMTools SNP 54389 54389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 54452 54452 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 55425 55425 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C48%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold340 SAMTools SNP 55467 55467 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C34%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold340 SAMTools SNP 55512 55512 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C3%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold340 SAMTools SNP 55952 55952 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C4%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.74%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold340 SAMTools SNP 56435 56435 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 56462 56462 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C2%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D6.6e-06%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold340 SAMTools SNP 58589 58589 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C14%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold340 SAMTools SNP 58715 58715 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold340 SAMTools SNP 59637 59637 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C29%2C56%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 60246 60246 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C85%2C20%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 60262 60262 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold340 SAMTools SNP 62697 62697 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.091%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold340 SAMTools SNP 66458 66458 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C4:69 scaffold340 SAMTools SNP 66516 66516 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 82981 82981 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C10%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.49%2C2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold340 SAMTools SNP 84540 84540 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C60%2C0:99 scaffold340 SAMTools SNP 84632 84632 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold340 SAMTools SNP 84649 84649 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.62%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold340 SAMTools SNP 85035 85035 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold340 SAMTools SNP 86363 86363 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold340 SAMTools SNP 86410 86410 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C30%2C0:57 scaffold340 SAMTools SNP 91463 91463 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 134012 134012 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 134024 134024 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 145408 145408 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold340 SAMTools SNP 145423 145423 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold340 SAMTools SNP 150925 150925 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold340 SAMTools SNP 158369 158369 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold340 SAMTools SNP 165197 165197 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.3%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold340 SAMTools SNP 165215 165215 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold340 SAMTools SNP 165648 165648 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.33%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold340 SAMTools SNP 166255 166255 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold340 SAMTools SNP 168656 168656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold340 SAMTools SNP 169846 169846 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold340 SAMTools SNP 169931 169931 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.011%2C3.2e-18%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C162:66 scaffold340 SAMTools SNP 170007 170007 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold340 SAMTools SNP 176983 176983 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C125%2C47%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 177005 177005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C35%2C133%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold340 SAMTools SNP 177345 177345 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C57%2C0:99 scaffold340 SAMTools SNP 177444 177444 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold340 SAMTools SNP 177475 177475 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C13%2C46%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 180356 180356 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C58%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-06%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 180614 180614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold340 SAMTools SNP 180617 180617 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C26%2C45%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold340 SAMTools SNP 180650 180650 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C27%2C0:51 scaffold340 SAMTools SNP 180770 180770 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 182637 182637 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C47%2C42%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 183614 183614 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.17%2C0.43%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold340 SAMTools SNP 190554 190554 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold340 SAMTools SNP 194558 194558 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C222:64 scaffold340 SAMTools SNP 194822 194822 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C0.08%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold340 SAMTools SNP 194828 194828 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C0.12%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold340 SAMTools SNP 201363 201363 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C0.2%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold340 SAMTools SNP 201411 201411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold340 SAMTools SNP 206738 206738 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold340 SAMTools SNP 207523 207523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 207572 207572 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold340 SAMTools SNP 207906 207906 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold340 SAMTools SNP 208065 208065 55.8 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold340 SAMTools SNP 208378 208378 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold340 SAMTools SNP 208423 208423 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold340 SAMTools SNP 208900 208900 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.25%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C240:99 scaffold340 SAMTools SNP 208909 208909 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.4%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold340 SAMTools SNP 209032 209032 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold340 SAMTools SNP 209044 209044 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold340 SAMTools SNP 209409 209409 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold340 SAMTools SNP 210381 210381 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C109:99 scaffold340 SAMTools SNP 210420 210420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold340 SAMTools SNP 210462 210462 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold340 SAMTools SNP 210477 210477 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold340 SAMTools SNP 210862 210862 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold340 SAMTools SNP 210906 210906 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold340 SAMTools SNP 211309 211309 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold340 SAMTools SNP 211314 211314 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C165:99 scaffold340 SAMTools SNP 211732 211732 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 212128 212128 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold340 SAMTools SNP 212387 212387 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold340 SAMTools SNP 212727 212727 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C182:99 scaffold340 SAMTools SNP 213083 213083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold340 SAMTools SNP 213121 213121 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold340 SAMTools SNP 214158 214158 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.00016%2C0.016%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C227:99 scaffold340 SAMTools SNP 214161 214161 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0012%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C224:53 scaffold340 SAMTools SNP 214495 214495 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.09%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold340 SAMTools SNP 214590 214590 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 214918 214918 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.2e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 218465 218465 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 236872 236872 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C110:73 scaffold340 SAMTools SNP 236936 236936 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold340 SAMTools SNP 242765 242765 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold340 SAMTools SNP 242895 242895 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C19%2C9%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.8%2C4.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold340 SAMTools SNP 243815 243815 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.33%2C1e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C196:97 scaffold340 SAMTools SNP 244194 244194 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold340 SAMTools SNP 246004 246004 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 246353 246353 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C95%2C40%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 247563 247563 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold340 SAMTools SNP 247592 247592 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold340 SAMTools SNP 247625 247625 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold340 SAMTools SNP 250665 250665 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold340 SAMTools SNP 252243 252243 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold340 SAMTools SNP 252463 252463 138 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold340 SAMTools SNP 252619 252619 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold340 SAMTools SNP 255050 255050 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold340 SAMTools SNP 255084 255084 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold340 SAMTools SNP 256490 256490 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold340 SAMTools SNP 256507 256507 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold340 SAMTools SNP 256524 256524 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold340 SAMTools SNP 258990 258990 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C45%2C0:87 scaffold340 SAMTools SNP 259075 259075 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C33%2C0:63 scaffold340 SAMTools SNP 259173 259173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold340 SAMTools SNP 259564 259564 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold340 SAMTools SNP 259862 259862 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold340 SAMTools SNP 259888 259888 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold340 SAMTools SNP 261496 261496 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold340 SAMTools SNP 261526 261526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold340 SAMTools SNP 261824 261824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold340 SAMTools SNP 261856 261856 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold340 SAMTools SNP 261860 261860 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.039%2C0.0019%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold340 SAMTools SNP 262649 262649 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C3%2C13%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.31%2C3e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold340 SAMTools SNP 262704 262704 52.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold340 SAMTools SNP 263462 263462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C70%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold340 SAMTools SNP 263850 263850 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.28%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold340 SAMTools SNP 264288 264288 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold340 SAMTools SNP 264654 264654 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold340 SAMTools SNP 265434 265434 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold340 SAMTools SNP 265590 265590 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold340 SAMTools SNP 265830 265830 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold340 SAMTools SNP 265838 265838 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C90:93 scaffold343 SAMTools SNP 2318 2318 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 2349 2349 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold343 SAMTools SNP 3407 3407 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold343 SAMTools SNP 3445 3445 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C193:99 scaffold343 SAMTools SNP 5902 5902 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold343 SAMTools SNP 5911 5911 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.41%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C174:72 scaffold343 SAMTools SNP 179524 179524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 179931 179931 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 189279 189279 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold343 SAMTools SNP 211191 211191 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D35%3BFQ%3D14.9%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C42:45 scaffold343 SAMTools SNP 211195 211195 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold343 SAMTools SNP 211311 211311 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold343 SAMTools SNP 224157 224157 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C57%2C0:99 scaffold343 SAMTools SNP 224253 224253 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C66%2C0:99 scaffold343 SAMTools SNP 233240 233240 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold343 SAMTools SNP 252946 252946 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold343 SAMTools SNP 271082 271082 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold343 SAMTools SNP 271085 271085 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold343 SAMTools SNP 272620 272620 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold343 SAMTools SNP 276946 276946 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold343 SAMTools SNP 277086 277086 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.012%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold343 SAMTools SNP 282119 282119 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.00026%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C228:99 scaffold343 SAMTools SNP 282145 282145 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.00057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C216:99 scaffold343 SAMTools SNP 283968 283968 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C6%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.41%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold343 SAMTools SNP 288260 288260 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold343 SAMTools SNP 288370 288370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold343 SAMTools SNP 288391 288391 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 289806 289806 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 289833 289833 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C8%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D5.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold343 SAMTools SNP 289890 289890 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C10%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold343 SAMTools SNP 290307 290307 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold343 SAMTools SNP 290321 290321 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold343 SAMTools SNP 290355 290355 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold343 SAMTools SNP 291235 291235 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C4%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold343 SAMTools SNP 292107 292107 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold343 SAMTools SNP 297022 297022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 297186 297186 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold343 SAMTools SNP 298125 298125 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold343 SAMTools SNP 298569 298569 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold343 SAMTools SNP 299152 299152 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold343 SAMTools SNP 299639 299639 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold343 SAMTools SNP 325904 325904 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C18%2C0:33 scaffold343 SAMTools SNP 326316 326316 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C36%2C0:69 scaffold343 SAMTools SNP 326978 326978 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold343 SAMTools SNP 327497 327497 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.52%2C7.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C152:69 scaffold343 SAMTools SNP 327626 327626 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C42%2C0:81 scaffold343 SAMTools SNP 332205 332205 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold343 SAMTools SNP 332214 332214 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.36%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold343 SAMTools SNP 333352 333352 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold343 SAMTools SNP 333390 333390 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold343 SAMTools SNP 333409 333409 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold343 SAMTools SNP 333551 333551 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C221:99 scaffold343 SAMTools SNP 333578 333578 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold343 SAMTools SNP 333739 333739 138 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold343 SAMTools SNP 336407 336407 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold343 SAMTools SNP 383772 383772 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C30%2C37%2C16%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.09%2C1.4e-78%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold343 SAMTools SNP 383847 383847 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C12%2C37%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.44%2C2.6e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold343 SAMTools SNP 383907 383907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold343 SAMTools SNP 388113 388113 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 389550 389550 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.085%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold343 SAMTools SNP 392498 392498 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold343 SAMTools SNP 392558 392558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 393047 393047 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C20%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold343 SAMTools SNP 403408 403408 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 403417 403417 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold343 SAMTools SNP 420424 420424 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.069%2C3.6e-23%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold343 SAMTools SNP 420618 420618 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C0.1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C30%2C0:57 scaffold343 SAMTools SNP 420642 420642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold343 SAMTools SNP 420672 420672 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C125%2C5%2C39%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0049%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold343 SAMTools SNP 421172 421172 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.011%2C0.034%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold343 SAMTools SNP 421199 421199 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 422851 422851 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C64%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C9.3e-07%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 424177 424177 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 432227 432227 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold343 SAMTools SNP 434191 434191 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold343 SAMTools SNP 435514 435514 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 436776 436776 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 437062 437062 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 439332 439332 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold343 SAMTools SNP 440224 440224 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold343 SAMTools SNP 444537 444537 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C166:99 scaffold343 SAMTools SNP 453102 453102 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold343 SAMTools SNP 453111 453111 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold343 SAMTools SNP 453841 453841 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 453850 453850 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 454753 454753 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 454876 454876 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold343 SAMTools SNP 454947 454947 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 466066 466066 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 466094 466094 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 466345 466345 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 474177 474177 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 474476 474476 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 482531 482531 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold343 SAMTools SNP 483386 483386 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold343 SAMTools SNP 496063 496063 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C137:77 scaffold343 SAMTools SNP 496714 496714 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C3.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold343 SAMTools SNP 496729 496729 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.078%2C0.00036%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold343 SAMTools SNP 496730 496730 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.012%2C0.044%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold343 SAMTools SNP 496891 496891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 496935 496935 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0067%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold343 SAMTools SNP 497147 497147 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 497337 497337 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 497704 497704 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold343 SAMTools SNP 497707 497707 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold343 SAMTools SNP 497969 497969 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.49%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold343 SAMTools SNP 498369 498369 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C152:99 scaffold343 SAMTools SNP 498798 498798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 498879 498879 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C189:99 scaffold343 SAMTools SNP 499029 499029 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold343 SAMTools SNP 499074 499074 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 499324 499324 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 499327 499327 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 499501 499501 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold343 SAMTools SNP 499513 499513 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold343 SAMTools SNP 499818 499818 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold343 SAMTools SNP 499870 499870 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold343 SAMTools SNP 501248 501248 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold343 SAMTools SNP 501293 501293 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 501314 501314 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C0%2C11%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold343 SAMTools SNP 501473 501473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C66%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold343 SAMTools SNP 503500 503500 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C48%3BMQ%3D0%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C157%2C0:87 scaffold343 SAMTools SNP 511490 511490 27.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold343 SAMTools SNP 512517 512517 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0029%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold343 SAMTools SNP 512538 512538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold343 SAMTools SNP 512559 512559 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold343 SAMTools SNP 512821 512821 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C14%2C34%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-05%2C1.8e-08%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 512842 512842 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C11%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold343 SAMTools SNP 512887 512887 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold343 SAMTools SNP 512896 512896 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold343 SAMTools SNP 512902 512902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold343 SAMTools SNP 512932 512932 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C2%2C96%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold343 SAMTools SNP 513223 513223 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 513496 513496 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 514405 514405 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C8.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 515066 515066 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold343 SAMTools SNP 516326 516326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C14%2C36%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 516344 516344 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C32%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 516843 516843 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C32%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 517299 517299 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C54%2C4%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-07%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 519204 519204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C68%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold343 SAMTools SNP 519240 519240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D195%2C35%2C52%2C27%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00054%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 521967 521967 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C187%2C2%2C74%3BMQ%3D49%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold343 SAMTools SNP 521976 521976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C271%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold343 SAMTools SNP 523235 523235 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.57%2C0.33%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold343 SAMTools SNP 529038 529038 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold343 SAMTools SNP 529376 529376 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold343 SAMTools SNP 532914 532914 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold343 SAMTools SNP 532957 532957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold343 SAMTools SNP 533002 533002 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold343 SAMTools SNP 533335 533335 19 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold343 SAMTools SNP 533517 533517 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold343 SAMTools SNP 533521 533521 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold343 SAMTools SNP 533599 533599 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold343 SAMTools SNP 533631 533631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold343 SAMTools SNP 534074 534074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold343 SAMTools SNP 534250 534250 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold343 SAMTools SNP 534297 534297 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold343 SAMTools SNP 535354 535354 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold343 SAMTools SNP 535367 535367 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold343 SAMTools SNP 536054 536054 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.11%2C0.16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C189:99 scaffold343 SAMTools SNP 536078 536078 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold343 SAMTools SNP 536535 536535 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 536562 536562 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C110:71 scaffold343 SAMTools SNP 536577 536577 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold343 SAMTools SNP 536641 536641 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold343 SAMTools SNP 537201 537201 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 537267 537267 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C36%2C0:69 scaffold343 SAMTools SNP 538302 538302 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C35:38 scaffold343 SAMTools SNP 538590 538590 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold343 SAMTools SNP 538735 538735 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold343 SAMTools SNP 538755 538755 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold343 SAMTools SNP 538974 538974 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.01%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold343 SAMTools SNP 539042 539042 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C236:99 scaffold343 SAMTools SNP 540003 540003 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold343 SAMTools SNP 542743 542743 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold343 SAMTools SNP 543325 543325 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 543397 543397 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold343 SAMTools SNP 543752 543752 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 543824 543824 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold343 SAMTools SNP 543833 543833 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold343 SAMTools SNP 544236 544236 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold343 SAMTools SNP 544277 544277 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 544323 544323 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 547099 547099 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold343 SAMTools SNP 547596 547596 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 607371 607371 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 616190 616190 57.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold343 SAMTools SNP 616227 616227 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C33%2C0:63 scaffold343 SAMTools SNP 620942 620942 38.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold343 SAMTools SNP 624580 624580 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold343 SAMTools SNP 625519 625519 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 627981 627981 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold343 SAMTools SNP 644032 644032 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold343 SAMTools SNP 655721 655721 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold343 SAMTools SNP 656273 656273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C55%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold343 SAMTools SNP 656782 656782 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.37%2C3.4e-05%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold343 SAMTools SNP 656853 656853 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold343 SAMTools SNP 656866 656866 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold343 SAMTools SNP 657201 657201 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold343 SAMTools SNP 657537 657537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 657917 657917 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold343 SAMTools SNP 659084 659084 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 659174 659174 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold343 SAMTools SNP 659702 659702 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold343 SAMTools SNP 660164 660164 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold343 SAMTools SNP 660221 660221 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold343 SAMTools SNP 660266 660266 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C18%2C0:33 scaffold343 SAMTools SNP 660800 660800 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.11%2C0.027%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C193:43 scaffold343 SAMTools SNP 660824 660824 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold343 SAMTools SNP 679146 679146 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 679176 679176 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold343 SAMTools SNP 680789 680789 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 680897 680897 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold343 SAMTools SNP 681149 681149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 31 31 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 85 85 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold347 SAMTools SNP 100 100 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold347 SAMTools SNP 1218 1218 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold347 SAMTools SNP 1534 1534 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold347 SAMTools SNP 2448 2448 85 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C94%2C85%2C118%2C0%2C112:16 scaffold347 SAMTools SNP 2562 2562 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold347 SAMTools SNP 2795 2795 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold347 SAMTools SNP 2819 2819 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold347 SAMTools SNP 3439 3439 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 5149 5149 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 5167 5167 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 5176 5176 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 5233 5233 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold347 SAMTools SNP 5407 5407 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 5428 5428 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 5567 5567 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold347 SAMTools SNP 5576 5576 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 7274 7274 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold347 SAMTools SNP 7304 7304 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 7319 7319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 9606 9606 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold347 SAMTools SNP 10749 10749 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold347 SAMTools SNP 15777 15777 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C70:70 scaffold347 SAMTools SNP 16342 16342 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold347 SAMTools SNP 16405 16405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold347 SAMTools SNP 16444 16444 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.36%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C173:99 scaffold347 SAMTools SNP 16826 16826 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C182:99 scaffold347 SAMTools SNP 16869 16869 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold347 SAMTools SNP 17006 17006 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold347 SAMTools SNP 17047 17047 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold347 SAMTools SNP 17048 17048 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold347 SAMTools SNP 18031 18031 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold347 SAMTools SNP 18085 18085 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 18109 18109 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold347 SAMTools SNP 18509 18509 196 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C248%2C0%2C245:39 scaffold347 SAMTools SNP 18524 18524 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold347 SAMTools SNP 18710 18710 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold347 SAMTools SNP 19229 19229 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold347 SAMTools SNP 19382 19382 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold347 SAMTools SNP 19613 19613 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C184:87 scaffold347 SAMTools SNP 19641 19641 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0042%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C160:53 scaffold347 SAMTools SNP 19829 19829 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold347 SAMTools SNP 19916 19916 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold347 SAMTools SNP 19964 19964 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.29%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold347 SAMTools SNP 20356 20356 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold347 SAMTools SNP 20392 20392 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold347 SAMTools SNP 20400 20400 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold347 SAMTools SNP 20458 20458 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C172:49 scaffold347 SAMTools SNP 51197 51197 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold347 SAMTools SNP 52057 52057 43.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold347 SAMTools SNP 52117 52117 46.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold347 SAMTools SNP 52935 52935 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C27%2C0:48 scaffold347 SAMTools SNP 53547 53547 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold347 SAMTools SNP 55465 55465 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold347 SAMTools SNP 59778 59778 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C90%2C0:99 scaffold347 SAMTools SNP 60068 60068 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C117%2C0:99 scaffold347 SAMTools SNP 60180 60180 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold347 SAMTools SNP 93231 93231 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C122:36 scaffold347 SAMTools SNP 93248 93248 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.00057%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C253:99 scaffold347 SAMTools SNP 93679 93679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C36%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold347 SAMTools SNP 115869 115869 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 120974 120974 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 121300 121300 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold347 SAMTools SNP 122271 122271 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 126048 126048 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold347 SAMTools SNP 132778 132778 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold347 SAMTools SNP 133969 133969 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold347 SAMTools SNP 148431 148431 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C81:34 scaffold347 SAMTools SNP 149018 149018 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold347 SAMTools SNP 153898 153898 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C2.3e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C29:32 scaffold347 SAMTools SNP 154545 154545 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold347 SAMTools SNP 154799 154799 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold347 SAMTools SNP 154868 154868 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold347 SAMTools SNP 154913 154913 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C33%2C0:63 scaffold347 SAMTools SNP 155921 155921 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C17%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C5.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold347 SAMTools SNP 156809 156809 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.1%2C1.1e-06%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold347 SAMTools SNP 156917 156917 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold347 SAMTools SNP 167234 167234 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold347 SAMTools SNP 174126 174126 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 175046 175046 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 175067 175067 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 180311 180311 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold347 SAMTools SNP 180830 180830 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold347 SAMTools SNP 180871 180871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 180875 180875 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 181143 181143 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold347 SAMTools SNP 181176 181176 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 181185 181185 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 182961 182961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 184815 184815 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 184983 184983 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold347 SAMTools SNP 184992 184992 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold347 SAMTools SNP 187417 187417 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold347 SAMTools SNP 187436 187436 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 187447 187447 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 189396 189396 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold347 SAMTools SNP 190476 190476 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold347 SAMTools SNP 203656 203656 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold347 SAMTools SNP 211195 211195 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 211693 211693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C13%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold347 SAMTools SNP 212299 212299 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C5.9e-26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C203:44 scaffold347 SAMTools SNP 212371 212371 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.61%2C8.9e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold347 SAMTools SNP 212755 212755 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C249:64 scaffold347 SAMTools SNP 218106 218106 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold347 SAMTools SNP 219060 219060 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C4.5e-10%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C171:64 scaffold347 SAMTools SNP 219069 219069 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C174:40 scaffold347 SAMTools SNP 221287 221287 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 221904 221904 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 222338 222338 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 223486 223486 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C22:25 scaffold347 SAMTools SNP 223509 223509 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold347 SAMTools SNP 224196 224196 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold347 SAMTools SNP 224237 224237 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C169:99 scaffold347 SAMTools SNP 225752 225752 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C189:99 scaffold347 SAMTools SNP 230370 230370 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C5.4e-16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C223:99 scaffold347 SAMTools SNP 230786 230786 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C241:99 scaffold347 SAMTools SNP 230814 230814 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C5.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C219:99 scaffold347 SAMTools SNP 232601 232601 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C2%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold347 SAMTools SNP 233647 233647 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 233659 233659 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 240166 240166 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C16%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold347 SAMTools SNP 240184 240184 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold347 SAMTools SNP 240823 240823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold347 SAMTools SNP 240871 240871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold347 SAMTools SNP 240931 240931 25.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold347 SAMTools SNP 241330 241330 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.0029%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold347 SAMTools SNP 241345 241345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold347 SAMTools SNP 241542 241542 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold347 SAMTools SNP 241570 241570 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold347 SAMTools SNP 241690 241690 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold347 SAMTools SNP 241694 241694 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold347 SAMTools SNP 241792 241792 180 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C8%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C151%2C0%2C200%2C120%2C197:99 scaffold347 SAMTools SNP 242211 242211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C2%2C103%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 242577 242577 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C30%2C0:57 scaffold347 SAMTools SNP 242775 242775 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold347 SAMTools SNP 242778 242778 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold347 SAMTools SNP 243434 243434 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C27%2C71%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 243735 243735 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C26%2C40%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C2.4e-37%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 244171 244171 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C67%2C61%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 244183 244183 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C53%2C41%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.00025%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 244580 244580 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C34%2C18%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00035%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold347 SAMTools SNP 245372 245372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C45%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 249129 249129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C58%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold347 SAMTools SNP 249610 249610 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold347 SAMTools SNP 249616 249616 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold347 SAMTools SNP 249896 249896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C10%2C42%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C9.9e-15%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 249989 249989 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 250185 250185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold347 SAMTools SNP 250209 250209 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.36%2C0.4%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold347 SAMTools SNP 250266 250266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 251348 251348 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C18%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.31%2C0.38%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 253423 253423 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 253425 253425 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 254822 254822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold347 SAMTools SNP 254841 254841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.00017%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 254864 254864 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 254888 254888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C29%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold347 SAMTools SNP 255254 255254 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C35%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.49%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 255421 255421 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold347 SAMTools SNP 267972 267972 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 268044 268044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold347 SAMTools SNP 268049 268049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold347 SAMTools SNP 268109 268109 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 268129 268129 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 268709 268709 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 268785 268785 38.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold347 SAMTools SNP 269938 269938 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold347 SAMTools SNP 270079 270079 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C28%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.049%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 270352 270352 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold347 SAMTools SNP 270838 270838 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D228%2C28%2C104%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 272372 272372 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C207%2C23%2C28%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.00026%2C0.00069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold347 SAMTools SNP 272393 272393 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C89%2C31%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 273075 273075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C53%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 273443 273443 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold347 SAMTools SNP 273616 273616 52.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold347 SAMTools SNP 285146 285146 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 285184 285184 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold347 SAMTools SNP 285587 285587 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 289536 289536 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold347 SAMTools SNP 291872 291872 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold347 SAMTools SNP 292136 292136 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C45%2C0:87 scaffold347 SAMTools SNP 292202 292202 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold347 SAMTools SNP 296758 296758 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C48%2C0:93 scaffold347 SAMTools SNP 297073 297073 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C51%2C0:98 scaffold347 SAMTools SNP 298134 298134 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.61%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold347 SAMTools SNP 299166 299166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 301499 301499 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C17%2C7%3BMQ%3D44%3BFQ%3D195%3BPV4%3D0.16%2C1%2C0.047%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C249:99 scaffold347 SAMTools SNP 301554 301554 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D46%3BFQ%3D112%3BPV4%3D0.26%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold347 SAMTools SNP 302107 302107 4.12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D1%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C45%2C0:38 scaffold347 SAMTools SNP 303939 303939 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D8%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C105%2C0:69 scaffold347 SAMTools SNP 304357 304357 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D43%3BFQ%3D13.2%3BPV4%3D1%2C2.8e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C75:42 scaffold347 SAMTools SNP 309656 309656 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold347 SAMTools SNP 309663 309663 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 312710 312710 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.46%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C184:28 scaffold347 SAMTools SNP 319825 319825 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C233:65 scaffold347 SAMTools SNP 319833 319833 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold347 SAMTools SNP 364621 364621 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.5e-18%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C142:44 scaffold347 SAMTools SNP 369567 369567 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold347 SAMTools SNP 402468 402468 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold347 SAMTools SNP 402504 402504 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C8%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold347 SAMTools SNP 402869 402869 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.052%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C174:85 scaffold347 SAMTools SNP 402885 402885 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0156%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold347 SAMTools SNP 402895 402895 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold347 SAMTools SNP 402923 402923 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold347 SAMTools SNP 403350 403350 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold347 SAMTools SNP 420131 420131 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold347 SAMTools SNP 420138 420138 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold347 SAMTools SNP 420627 420627 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold347 SAMTools SNP 442321 442321 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 442651 442651 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold347 SAMTools SNP 443950 443950 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold347 SAMTools SNP 450786 450786 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold347 SAMTools SNP 450993 450993 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 453811 453811 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 454827 454827 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 454880 454880 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 456991 456991 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold347 SAMTools SNP 530409 530409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 530432 530432 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 531421 531421 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C22%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.048%2C2.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold347 SAMTools SNP 532717 532717 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold347 SAMTools SNP 536415 536415 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.029%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C136:44 scaffold347 SAMTools SNP 536712 536712 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.46%2C0.011%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C200:41 scaffold347 SAMTools SNP 548700 548700 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D43%3BFQ%3D17.8%3BPV4%3D1%2C0.049%2C0.21%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C45:48 scaffold347 SAMTools SNP 549068 549068 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold347 SAMTools SNP 549864 549864 28.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D0.043%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C19%2C0:35 scaffold347 SAMTools SNP 550034 550034 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1.4e-20%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C3%2C0:6 scaffold347 SAMTools SNP 550044 550044 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold347 SAMTools SNP 550190 550190 52.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.077%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C11:14 scaffold347 SAMTools SNP 592934 592934 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 636298 636298 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold347 SAMTools SNP 636619 636619 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C246:86 scaffold347 SAMTools SNP 637416 637416 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold347 SAMTools SNP 639530 639530 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C79%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold347 SAMTools SNP 639935 639935 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.0077%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold347 SAMTools SNP 640016 640016 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C7%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.42%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold347 SAMTools SNP 640284 640284 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold347 SAMTools SNP 641054 641054 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold347 SAMTools SNP 641066 641066 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold347 SAMTools SNP 642755 642755 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C1%2C75%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold347 SAMTools SNP 644980 644980 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold347 SAMTools SNP 644998 644998 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold347 SAMTools SNP 645609 645609 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold347 SAMTools SNP 645644 645644 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold347 SAMTools SNP 645738 645738 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold347 SAMTools SNP 646465 646465 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold347 SAMTools SNP 646482 646482 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold347 SAMTools SNP 647987 647987 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold347 SAMTools SNP 648079 648079 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold347 SAMTools SNP 648097 648097 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold347 SAMTools SNP 648638 648638 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold347 SAMTools SNP 648668 648668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold347 SAMTools SNP 652421 652421 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold347 SAMTools SNP 712363 712363 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 82 82 89.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold348 SAMTools SNP 177 177 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D12.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C41:42 scaffold348 SAMTools SNP 261 261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C13%2C78%2C50%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.00056%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold348 SAMTools SNP 649 649 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C52%2C32%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.46%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 697 697 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C60%2C4%2C17%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.2%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold348 SAMTools SNP 3583 3583 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold348 SAMTools SNP 3994 3994 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold348 SAMTools SNP 4381 4381 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold348 SAMTools SNP 4435 4435 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold348 SAMTools SNP 4501 4501 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C164:42 scaffold348 SAMTools SNP 4546 4546 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C237:33 scaffold348 SAMTools SNP 4634 4634 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C203:99 scaffold348 SAMTools SNP 4641 4641 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold348 SAMTools SNP 5066 5066 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold348 SAMTools SNP 5098 5098 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold348 SAMTools SNP 5339 5339 47.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold348 SAMTools SNP 10347 10347 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold348 SAMTools SNP 46013 46013 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold348 SAMTools SNP 46929 46929 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold348 SAMTools SNP 46931 46931 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold348 SAMTools SNP 46977 46977 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 47605 47605 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C173%2C0%2C94%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0033%2C6.1e-15%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold348 SAMTools SNP 48286 48286 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C67%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C2.5e-06%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 52926 52926 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C31%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.71%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold348 SAMTools SNP 52929 52929 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C46%2C31%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C2.6e-67%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold348 SAMTools SNP 52968 52968 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C59%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 53007 53007 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C29%2C0%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D6.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold348 SAMTools SNP 53040 53040 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C72%2C0%2C26%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold348 SAMTools SNP 53523 53523 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C62%2C0%2C15%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.34%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold348 SAMTools SNP 53541 53541 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C44%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold348 SAMTools SNP 54349 54349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C391%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.3e-10%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold348 SAMTools SNP 54415 54415 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C102%2C32%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D4.1e-11%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold348 SAMTools SNP 55787 55787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C32%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold348 SAMTools SNP 55946 55946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold348 SAMTools SNP 56136 56136 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C41%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold348 SAMTools SNP 56307 56307 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C0%2C70%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold348 SAMTools SNP 56325 56325 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold348 SAMTools SNP 57446 57446 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold348 SAMTools SNP 171171 171171 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold348 SAMTools SNP 171448 171448 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold348 SAMTools SNP 171510 171510 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold348 SAMTools SNP 171519 171519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold348 SAMTools SNP 191801 191801 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold348 SAMTools SNP 191833 191833 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold348 SAMTools SNP 192242 192242 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold348 SAMTools SNP 192274 192274 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 192312 192312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 194045 194045 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold348 SAMTools SNP 194121 194121 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 195822 195822 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C16%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.001%2C2.4e-22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold348 SAMTools SNP 195920 195920 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C18%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.25%2C6.5e-47%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold348 SAMTools SNP 197754 197754 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C3%2C5%3BMQ%3D45%3BFQ%3D197%3BPV4%3D0.00047%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C224:99 scaffold348 SAMTools SNP 197768 197768 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D44%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold348 SAMTools SNP 197912 197912 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C2%3BMQ%3D43%3BFQ%3D44%3BPV4%3D0.24%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold348 SAMTools SNP 197936 197936 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C116:99 scaffold348 SAMTools SNP 198568 198568 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold348 SAMTools SNP 198611 198611 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold348 SAMTools SNP 198848 198848 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold348 SAMTools SNP 199330 199330 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold348 SAMTools SNP 199340 199340 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold348 SAMTools SNP 199397 199397 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 199410 199410 43.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold348 SAMTools SNP 199442 199442 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 199445 199445 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold348 SAMTools SNP 200185 200185 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D31%3BFQ%3D9.53%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C76:37 scaffold348 SAMTools SNP 201325 201325 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C4%3BMQ%3D43%3BFQ%3D20.1%3BPV4%3D0.032%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold348 SAMTools SNP 203276 203276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C6%2C13%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold348 SAMTools SNP 203462 203462 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold348 SAMTools SNP 209887 209887 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold348 SAMTools SNP 210838 210838 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold348 SAMTools SNP 211738 211738 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold348 SAMTools SNP 211741 211741 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold348 SAMTools SNP 214251 214251 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 214909 214909 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 215633 215633 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D39%3BFQ%3D77%3BPV4%3D1%2C0.053%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C177:99 scaffold348 SAMTools SNP 215648 215648 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C24%2C0:45 scaffold348 SAMTools SNP 215666 215666 88.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold348 SAMTools SNP 220286 220286 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold348 SAMTools SNP 220757 220757 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold348 SAMTools SNP 221124 221124 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold348 SAMTools SNP 221142 221142 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C4.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold348 SAMTools SNP 222969 222969 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold348 SAMTools SNP 224425 224425 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C45%2C0:87 scaffold348 SAMTools SNP 225110 225110 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold348 SAMTools SNP 225221 225221 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold348 SAMTools SNP 225489 225489 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold348 SAMTools SNP 225510 225510 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold348 SAMTools SNP 225552 225552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold348 SAMTools SNP 226050 226050 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold348 SAMTools SNP 226071 226071 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 226629 226629 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.59%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold348 SAMTools SNP 226668 226668 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold348 SAMTools SNP 226716 226716 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold348 SAMTools SNP 226950 226950 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold348 SAMTools SNP 227152 227152 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold348 SAMTools SNP 227223 227223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 227331 227331 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold348 SAMTools SNP 227387 227387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C64%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold348 SAMTools SNP 228780 228780 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold348 SAMTools SNP 228807 228807 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold348 SAMTools SNP 228814 228814 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold348 SAMTools SNP 229095 229095 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C87%2C0:99 scaffold348 SAMTools SNP 229264 229264 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C57%2C2%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.61%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold348 SAMTools SNP 229816 229816 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold348 SAMTools SNP 229822 229822 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 230801 230801 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 239148 239148 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold348 SAMTools SNP 240465 240465 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold348 SAMTools SNP 257018 257018 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold348 SAMTools SNP 257037 257037 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold348 SAMTools SNP 257055 257055 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold348 SAMTools SNP 283535 283535 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C19%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.46%2C5.2e-23%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold348 SAMTools SNP 283994 283994 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.6%2C0.0013%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold348 SAMTools SNP 284077 284077 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.6e-22%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C172:67 scaffold348 SAMTools SNP 284921 284921 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold348 SAMTools SNP 330596 330596 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 330659 330659 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 331781 331781 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold348 SAMTools SNP 332089 332089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold348 SAMTools SNP 332134 332134 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C6%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold348 SAMTools SNP 332766 332766 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold348 SAMTools SNP 332802 332802 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 333610 333610 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 333649 333649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C5%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold348 SAMTools SNP 333688 333688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C28%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold348 SAMTools SNP 334056 334056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 334098 334098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold348 SAMTools SNP 334110 334110 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold348 SAMTools SNP 334911 334911 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold348 SAMTools SNP 335810 335810 35.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold348 SAMTools SNP 336500 336500 28.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold348 SAMTools SNP 344206 344206 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold348 SAMTools SNP 344237 344237 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold348 SAMTools SNP 346359 346359 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold348 SAMTools SNP 346666 346666 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00019%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C130:34 scaffold348 SAMTools SNP 346780 346780 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold348 SAMTools SNP 346818 346818 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.006%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C77:48 scaffold348 SAMTools SNP 347599 347599 26.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold348 SAMTools SNP 365449 365449 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.23%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold348 SAMTools SNP 367399 367399 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C22%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C4.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold348 SAMTools SNP 367438 367438 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.026%2C4.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold348 SAMTools SNP 367678 367678 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C0.083%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C228:93 scaffold348 SAMTools SNP 375499 375499 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C175%2C0:99 scaffold348 SAMTools SNP 375726 375726 40.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold348 SAMTools SNP 376010 376010 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C3.9e-19%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C232:99 scaffold348 SAMTools SNP 378201 378201 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 380678 380678 179 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C21%2C0%2C202%2C2%2C199:39 scaffold348 SAMTools SNP 380741 380741 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C22%2C15%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold348 SAMTools SNP 380909 380909 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C30%2C10%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.15%2C0.33%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold348 SAMTools SNP 381284 381284 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C53%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 381348 381348 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D7.7e-05%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold348 SAMTools SNP 381376 381376 50.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold348 SAMTools SNP 381626 381626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold348 SAMTools SNP 381818 381818 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold348 SAMTools SNP 381851 381851 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold348 SAMTools SNP 381859 381859 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C36%2C0:69 scaffold348 SAMTools SNP 381941 381941 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C111%2C0:99 scaffold348 SAMTools SNP 381995 381995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold348 SAMTools SNP 384916 384916 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 385798 385798 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.11%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C246:99 scaffold348 SAMTools SNP 385827 385827 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.11%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C242:99 scaffold348 SAMTools SNP 386599 386599 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.24%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold348 SAMTools SNP 389253 389253 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C6%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.022%2C0.012%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold348 SAMTools SNP 390125 390125 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 390356 390356 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C56%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold348 SAMTools SNP 392072 392072 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold348 SAMTools SNP 392079 392079 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 392163 392163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C34%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.047%2C1%2C0.49%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 392168 392168 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C28%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.31%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 393157 393157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C24%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold348 SAMTools SNP 393463 393463 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C8%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.48%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold348 SAMTools SNP 393537 393537 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold348 SAMTools SNP 394080 394080 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold348 SAMTools SNP 394107 394107 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold348 SAMTools SNP 394482 394482 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C119:99 scaffold348 SAMTools SNP 394515 394515 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold348 SAMTools SNP 396724 396724 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold348 SAMTools SNP 397856 397856 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold348 SAMTools SNP 399875 399875 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold348 SAMTools SNP 399890 399890 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 400028 400028 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C39%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C163%2C0:99 scaffold348 SAMTools SNP 400133 400133 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C7e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C213:99 scaffold348 SAMTools SNP 400313 400313 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C48%2C0:93 scaffold348 SAMTools SNP 435635 435635 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold348 SAMTools SNP 435662 435662 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold348 SAMTools SNP 436848 436848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold348 SAMTools SNP 436863 436863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold348 SAMTools SNP 437154 437154 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold348 SAMTools SNP 437997 437997 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold348 SAMTools SNP 438323 438323 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 438338 438338 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 439549 439549 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold348 SAMTools SNP 439585 439585 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold348 SAMTools SNP 439951 439951 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold348 SAMTools SNP 439985 439985 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold348 SAMTools SNP 440726 440726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold348 SAMTools SNP 440741 440741 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold348 SAMTools SNP 440816 440816 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.00013%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold348 SAMTools SNP 440819 440819 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1.8e-05%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold348 SAMTools SNP 441165 441165 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold348 SAMTools SNP 441207 441207 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold348 SAMTools SNP 441841 441841 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold348 SAMTools SNP 441916 441916 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 443384 443384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C54%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold348 SAMTools SNP 448662 448662 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D344%2C0%2C262%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 449598 449598 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C40%2C0%2C15%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D9e-05%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold348 SAMTools SNP 449634 449634 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold348 SAMTools SNP 449709 449709 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold348 SAMTools SNP 449713 449713 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.042%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold348 SAMTools SNP 452291 452291 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.045%2C0.00021%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold348 SAMTools SNP 452301 452301 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 457621 457621 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 458770 458770 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold348 SAMTools SNP 464282 464282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold348 SAMTools SNP 464291 464291 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold348 SAMTools SNP 482490 482490 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold348 SAMTools SNP 488841 488841 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold348 SAMTools SNP 506519 506519 4.75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold348 SAMTools SNP 534406 534406 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 538623 538623 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 538659 538659 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 538687 538687 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 539012 539012 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 539042 539042 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 555973 555973 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold348 SAMTools SNP 556573 556573 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold348 SAMTools SNP 556592 556592 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C35:38 scaffold348 SAMTools SNP 556682 556682 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C195:93 scaffold348 SAMTools SNP 558524 558524 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold348 SAMTools SNP 558531 558531 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C222:99 scaffold348 SAMTools SNP 559142 559142 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold348 SAMTools SNP 566078 566078 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold348 SAMTools SNP 566649 566649 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold348 SAMTools SNP 566654 566654 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold348 SAMTools SNP 566664 566664 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.41%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold348 SAMTools SNP 575543 575543 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 586366 586366 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold348 SAMTools SNP 586372 586372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 596310 596310 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold348 SAMTools SNP 612580 612580 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 620067 620067 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold348 SAMTools SNP 626922 626922 62.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold348 SAMTools SNP 627956 627956 64.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold348 SAMTools SNP 632083 632083 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.33%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold348 SAMTools SNP 632094 632094 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 633676 633676 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.17%2C0.011%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold348 SAMTools SNP 633679 633679 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold348 SAMTools SNP 633682 633682 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold348 SAMTools SNP 633985 633985 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold348 SAMTools SNP 634210 634210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold348 SAMTools SNP 634228 634228 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold348 SAMTools SNP 635175 635175 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold348 SAMTools SNP 635187 635187 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold348 SAMTools SNP 635205 635205 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.011%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C215:54 scaffold348 SAMTools SNP 641410 641410 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold348 SAMTools SNP 642064 642064 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C235:33 scaffold348 SAMTools SNP 646214 646214 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C255%2C0:99 scaffold348 SAMTools SNP 647623 647623 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.069%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold348 SAMTools SNP 648029 648029 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold348 SAMTools SNP 648367 648367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold348 SAMTools SNP 648382 648382 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 648424 648424 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.13%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold348 SAMTools SNP 650670 650670 153 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.46%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C141:99 scaffold348 SAMTools SNP 650829 650829 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold348 SAMTools SNP 650934 650934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold348 SAMTools SNP 652057 652057 6.97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D2%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C99%2C0:51 scaffold348 SAMTools SNP 652207 652207 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold348 SAMTools SNP 653191 653191 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D1%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C48%2C0:36 scaffold348 SAMTools SNP 657875 657875 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C18%2C0:33 scaffold348 SAMTools SNP 657899 657899 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 657902 657902 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.019%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold348 SAMTools SNP 658746 658746 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold348 SAMTools SNP 658775 658775 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold348 SAMTools SNP 658797 658797 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold348 SAMTools SNP 659676 659676 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold348 SAMTools SNP 659745 659745 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold348 SAMTools SNP 667470 667470 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold348 SAMTools SNP 667756 667756 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold348 SAMTools SNP 667858 667858 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C130:74 scaffold348 SAMTools SNP 667925 667925 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C18%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 668305 668305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C40%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 668354 668354 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C0%2C15%3BMQ%3D50%3BFQ%3D150%3BPV4%3D5.1e-05%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold348 SAMTools SNP 669573 669573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold348 SAMTools SNP 669980 669980 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C57%2C31%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C1%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 670337 670337 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C5%2C30%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.74%2C1.9e-64%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold348 SAMTools SNP 670395 670395 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 670679 670679 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C95%2C0%2C57%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.00023%2C8.9e-19%2C1%2C4.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold348 SAMTools SNP 670949 670949 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C102%2C0%2C56%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold348 SAMTools SNP 670997 670997 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold348 SAMTools SNP 671000 671000 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold348 SAMTools SNP 671938 671938 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold348 SAMTools SNP 672166 672166 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold348 SAMTools SNP 672184 672184 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold348 SAMTools SNP 672718 672718 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C0.0027%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C182:28 scaffold348 SAMTools SNP 672885 672885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold348 SAMTools SNP 672906 672906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold348 SAMTools SNP 674227 674227 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold348 SAMTools SNP 674493 674493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C21%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold348 SAMTools SNP 674689 674689 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold348 SAMTools SNP 675025 675025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 675505 675505 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C42%2C5%2C18%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D0.052%2C2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold348 SAMTools SNP 675567 675567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C42%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold348 SAMTools SNP 675864 675864 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C12%2C1%3BMQ%3D44%3BFQ%3D67%3BPV4%3D0.051%2C0.26%2C0.09%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold348 SAMTools SNP 677040 677040 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C0%2C18%3BMQ%3D45%3BFQ%3D142%3BPV4%3D0.32%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold348 SAMTools SNP 677055 677055 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C0%2C18%3BMQ%3D45%3BFQ%3D138%3BPV4%3D0.32%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold348 SAMTools SNP 682136 682136 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C88:59 scaffold348 SAMTools SNP 682768 682768 79.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C15%2C9%2C11%3BMQ%3D15%3BFQ%3D-31%3BPV4%3D0.77%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C4%2C0:7 scaffold348 SAMTools SNP 683416 683416 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C19%2C19%2C19%3BMQ%3D40%3BFQ%3D162%3BPV4%3D0.034%2C1%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C253:99 scaffold348 SAMTools SNP 683855 683855 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold348 SAMTools SNP 694990 694990 90.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold348 SAMTools SNP 695044 695044 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold348 SAMTools SNP 695067 695067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold348 SAMTools SNP 697249 697249 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold348 SAMTools SNP 699749 699749 14.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold348 SAMTools SNP 700784 700784 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.16%2C2.1e-09%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold348 SAMTools SNP 702592 702592 98 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0%2C125%2C11%2C122:51 scaffold348 SAMTools SNP 702698 702698 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C42%2C1%2C23%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.15%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold348 SAMTools SNP 702949 702949 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00082%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 703111 703111 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C19%3BMQ%3D50%3BFQ%3D98.8%3BPV4%3D1%2C6.2e-17%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C132:99 scaffold348 SAMTools SNP 703135 703135 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C20%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C7.8e-21%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C137:69 scaffold348 SAMTools SNP 703162 703162 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C7.2e-06%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C246:42 scaffold348 SAMTools SNP 703377 703377 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C54:43 scaffold348 SAMTools SNP 703386 703386 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold348 SAMTools SNP 705373 705373 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C8.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 705821 705821 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold348 SAMTools SNP 706078 706078 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.46%2C0.36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold348 SAMTools SNP 706808 706808 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C35%2C18%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.00023%2C4e-10%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold348 SAMTools SNP 707538 707538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold348 SAMTools SNP 707726 707726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold348 SAMTools SNP 720387 720387 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold348 SAMTools SNP 720993 720993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold348 SAMTools SNP 721349 721349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold348 SAMTools SNP 722007 722007 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold348 SAMTools SNP 722291 722291 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold348 SAMTools SNP 722332 722332 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C5%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00035%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 722341 722341 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C56%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 725320 725320 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C55%2C0%2C13%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.58%2C0.0041%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold348 SAMTools SNP 725579 725579 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold348 SAMTools SNP 728073 728073 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C233:69 scaffold348 SAMTools SNP 728531 728531 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold348 SAMTools SNP 728609 728609 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold348 SAMTools SNP 728621 728621 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C38:41 scaffold348 SAMTools SNP 729269 729269 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold348 SAMTools SNP 729284 729284 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold348 SAMTools SNP 732046 732046 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold348 SAMTools SNP 733432 733432 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold348 SAMTools SNP 733477 733477 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C198:99 scaffold348 SAMTools SNP 734554 734554 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.99%3BPV4%3D0.25%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C21:24 scaffold348 SAMTools SNP 734573 734573 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold348 SAMTools SNP 734600 734600 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold348 SAMTools SNP 734751 734751 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold348 SAMTools SNP 737066 737066 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold348 SAMTools SNP 737105 737105 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C156:55 scaffold348 SAMTools SNP 745562 745562 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold348 SAMTools SNP 748618 748618 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold348 SAMTools SNP 748622 748622 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold348 SAMTools SNP 761376 761376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold348 SAMTools SNP 784956 784956 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.044%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold348 SAMTools SNP 785103 785103 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C11%2C10%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.16%2C5.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold348 SAMTools SNP 785145 785145 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold348 SAMTools SNP 785820 785820 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold348 SAMTools SNP 786015 786015 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C19%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.49%2C7.4e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold348 SAMTools SNP 786375 786375 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C45%2C0:87 scaffold348 SAMTools SNP 786498 786498 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.092%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C158:56 scaffold348 SAMTools SNP 788801 788801 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold348 SAMTools SNP 793094 793094 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.4%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C115:53 scaffold348 SAMTools SNP 793325 793325 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 793637 793637 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold348 SAMTools SNP 793771 793771 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold348 SAMTools SNP 794011 794011 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C108%2C0:99 scaffold348 SAMTools SNP 794684 794684 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.4%2C0.0037%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C124:53 scaffold348 SAMTools SNP 795256 795256 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C23%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.12%2C2.5e-12%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C118:87 scaffold348 SAMTools SNP 796860 796860 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C134:99 scaffold351 SAMTools SNP 12565 12565 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 12889 12889 12 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold351 SAMTools SNP 14161 14161 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 14255 14255 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 14301 14301 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold351 SAMTools SNP 14783 14783 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C64%2C3%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold351 SAMTools SNP 15053 15053 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold351 SAMTools SNP 15071 15071 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold351 SAMTools SNP 15379 15379 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold351 SAMTools SNP 16245 16245 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 25928 25928 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold351 SAMTools SNP 26530 26530 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold351 SAMTools SNP 31025 31025 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold351 SAMTools SNP 31070 31070 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold351 SAMTools SNP 31104 31104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold351 SAMTools SNP 32265 32265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold351 SAMTools SNP 33747 33747 23.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold351 SAMTools SNP 33763 33763 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold351 SAMTools SNP 36332 36332 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold351 SAMTools SNP 73085 73085 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold351 SAMTools SNP 81267 81267 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold351 SAMTools SNP 94694 94694 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold351 SAMTools SNP 94992 94992 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 196624 196624 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold351 SAMTools SNP 201703 201703 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold351 SAMTools SNP 222778 222778 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold351 SAMTools SNP 307198 307198 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D34%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C39%2C0:75 scaffold351 SAMTools SNP 308353 308353 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D44%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C228:57 scaffold351 SAMTools SNP 308399 308399 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold351 SAMTools SNP 308971 308971 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold351 SAMTools SNP 309219 309219 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 309696 309696 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 311700 311700 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold351 SAMTools SNP 322234 322234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 322478 322478 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 323000 323000 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 323031 323031 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold351 SAMTools SNP 323056 323056 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D0.2%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C42:36 scaffold351 SAMTools SNP 323134 323134 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold351 SAMTools SNP 323296 323296 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C1%3BMQ%3D40%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C247:88 scaffold351 SAMTools SNP 323845 323845 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C9%3BMQ%3D42%3BFQ%3D120%3BPV4%3D0.11%2C0.29%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C147:99 scaffold351 SAMTools SNP 324039 324039 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold351 SAMTools SNP 324195 324195 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C3%3BMQ%3D45%3BFQ%3D-50%3BPV4%3D0.36%2C0.3%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold351 SAMTools SNP 324463 324463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold351 SAMTools SNP 324529 324529 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C27%2C0:51 scaffold351 SAMTools SNP 325313 325313 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold351 SAMTools SNP 325491 325491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold351 SAMTools SNP 325513 325513 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold351 SAMTools SNP 325696 325696 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold351 SAMTools SNP 325720 325720 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 327255 327255 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold351 SAMTools SNP 356930 356930 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold351 SAMTools SNP 358267 358267 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 358277 358277 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 359537 359537 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold351 SAMTools SNP 412334 412334 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 412335 412335 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 412366 412366 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold351 SAMTools SNP 412745 412745 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold351 SAMTools SNP 426663 426663 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C51%2C0:99 scaffold351 SAMTools SNP 426865 426865 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C96%2C0:99 scaffold351 SAMTools SNP 427063 427063 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C23%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.078%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold351 SAMTools SNP 427093 427093 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.067%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold351 SAMTools SNP 428980 428980 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.0067%2C0.018%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold351 SAMTools SNP 429010 429010 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold351 SAMTools SNP 429027 429027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold351 SAMTools SNP 432775 432775 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 432792 432792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 451339 451339 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.053%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold351 SAMTools SNP 541083 541083 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 563238 563238 29.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold351 SAMTools SNP 572305 572305 86 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C47%2C38%2C115%2C0%2C112:16 scaffold351 SAMTools SNP 572371 572371 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 573754 573754 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 573797 573797 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 573818 573818 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 574620 574620 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D26%3BFQ%3D20.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C64:51 scaffold351 SAMTools SNP 574746 574746 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D27%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C84%2C0:99 scaffold351 SAMTools SNP 576376 576376 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold351 SAMTools SNP 576409 576409 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.23%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold351 SAMTools SNP 576430 576430 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold351 SAMTools SNP 577758 577758 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold351 SAMTools SNP 577768 577768 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold351 SAMTools SNP 577800 577800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 580313 580313 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 586329 586329 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 587322 587322 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 588984 588984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 589448 589448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 589797 589797 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C50%2C48%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 593236 593236 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C74%2C2%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 597919 597919 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 597958 597958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 597967 597967 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.28%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold351 SAMTools SNP 598108 598108 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold351 SAMTools SNP 598629 598629 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 598650 598650 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 598940 598940 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.54%2C7.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold351 SAMTools SNP 599030 599030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C14%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold351 SAMTools SNP 599523 599523 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C24%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 600078 600078 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C55%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold351 SAMTools SNP 600597 600597 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 601660 601660 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C13%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.27%2C2e-09%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold351 SAMTools SNP 602377 602377 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C15%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D2.4e-05%2C9.6e-12%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold351 SAMTools SNP 603015 603015 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C33%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.49%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold351 SAMTools SNP 603033 603033 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C10%2C79%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 604114 604114 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C10%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.45%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C222:99 scaffold351 SAMTools SNP 604115 604115 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold351 SAMTools SNP 604133 604133 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold351 SAMTools SNP 604207 604207 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 604754 604754 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold351 SAMTools SNP 605492 605492 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C27%2C0:51 scaffold351 SAMTools SNP 607879 607879 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold351 SAMTools SNP 608286 608286 215 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold351 SAMTools SNP 609118 609118 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 609124 609124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 610044 610044 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold351 SAMTools SNP 610062 610062 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold351 SAMTools SNP 610795 610795 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold351 SAMTools SNP 610816 610816 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold351 SAMTools SNP 610828 610828 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold351 SAMTools SNP 611169 611169 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold351 SAMTools SNP 611177 611177 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold351 SAMTools SNP 613362 613362 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold351 SAMTools SNP 613426 613426 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 614293 614293 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 618382 618382 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 618965 618965 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 619724 619724 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold351 SAMTools SNP 619727 619727 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold351 SAMTools SNP 619733 619733 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold351 SAMTools SNP 620465 620465 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold351 SAMTools SNP 620531 620531 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold351 SAMTools SNP 621367 621367 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 621701 621701 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold351 SAMTools SNP 622542 622542 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold351 SAMTools SNP 623036 623036 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold351 SAMTools SNP 623060 623060 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold351 SAMTools SNP 623381 623381 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold351 SAMTools SNP 623398 623398 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 623408 623408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold351 SAMTools SNP 624192 624192 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 625548 625548 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C35:38 scaffold351 SAMTools SNP 625556 625556 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold351 SAMTools SNP 625604 625604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold351 SAMTools SNP 642615 642615 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 643035 643035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 643322 643322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 644899 644899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 655333 655333 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold351 SAMTools SNP 657086 657086 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold351 SAMTools SNP 657881 657881 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold351 SAMTools SNP 657941 657941 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold351 SAMTools SNP 658314 658314 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold351 SAMTools SNP 658740 658740 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C148:99 scaffold351 SAMTools SNP 659272 659272 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 659522 659522 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold351 SAMTools SNP 659561 659561 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold351 SAMTools SNP 659621 659621 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 660841 660841 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C59:62 scaffold351 SAMTools SNP 660859 660859 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold351 SAMTools SNP 661371 661371 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C5.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C227:92 scaffold351 SAMTools SNP 661973 661973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 662014 662014 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.14%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold351 SAMTools SNP 662615 662615 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 662810 662810 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.15%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold351 SAMTools SNP 662873 662873 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.3e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C134:99 scaffold351 SAMTools SNP 663050 663050 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold351 SAMTools SNP 663092 663092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold351 SAMTools SNP 663399 663399 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold351 SAMTools SNP 663414 663414 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.24%2C0.011%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold351 SAMTools SNP 663471 663471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 664222 664222 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0299%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.015%2C3.2e-10%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold351 SAMTools SNP 664963 664963 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 665003 665003 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold351 SAMTools SNP 665415 665415 45.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold351 SAMTools SNP 667009 667009 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 667018 667018 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold351 SAMTools SNP 667573 667573 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold351 SAMTools SNP 668104 668104 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C210:72 scaffold351 SAMTools SNP 668928 668928 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold351 SAMTools SNP 669266 669266 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold351 SAMTools SNP 670018 670018 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold351 SAMTools SNP 670690 670690 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold351 SAMTools SNP 670738 670738 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.095%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold351 SAMTools SNP 670747 670747 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.42%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold351 SAMTools SNP 670759 670759 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold351 SAMTools SNP 672459 672459 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.43%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold351 SAMTools SNP 673769 673769 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C60%2C0:99 scaffold351 SAMTools SNP 675741 675741 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold351 SAMTools SNP 676087 676087 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.38%2C3.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold351 SAMTools SNP 676490 676490 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.6%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold351 SAMTools SNP 677079 677079 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C0.32%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold351 SAMTools SNP 677522 677522 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C4%3BMQ%3D49%3BFQ%3D108%3BPV4%3D0.35%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold351 SAMTools SNP 680595 680595 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold351 SAMTools SNP 680679 680679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C73%2C0%3BMQ%3D32%3BFQ%3D-207%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C0:99 scaffold351 SAMTools SNP 681547 681547 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C35%2C27%2C26%3BMQ%3D35%3BFQ%3D225%3BPV4%3D0.22%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 681573 681573 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C26%2C24%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.062%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 681684 681684 94.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D46%3BFQ%3D-19%3BPV4%3D1%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C8:11 scaffold351 SAMTools SNP 682780 682780 4.11 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold351 SAMTools SNP 684751 684751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold351 SAMTools SNP 684764 684764 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold351 SAMTools SNP 685350 685350 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold351 SAMTools SNP 685939 685939 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C16%3BMQ%3D48%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold351 SAMTools SNP 686378 686378 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 686467 686467 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold351 SAMTools SNP 687001 687001 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 687463 687463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold351 SAMTools SNP 688907 688907 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 689370 689370 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.41%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold351 SAMTools SNP 689397 689397 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold351 SAMTools SNP 690341 690341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold351 SAMTools SNP 690682 690682 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5e-14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C198:50 scaffold351 SAMTools SNP 690829 690829 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C18%2C38%2C0%3BMQ%3D48%3BFQ%3D128%3BPV4%3D0.0035%2C0.42%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold351 SAMTools SNP 690857 690857 13.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold351 SAMTools SNP 691318 691318 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C41%2C26%2C13%3BMQ%3D21%3BFQ%3D36%3BPV4%3D0.44%2C9.6e-39%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C148:66 scaffold351 SAMTools SNP 693466 693466 17.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold351 SAMTools SNP 693972 693972 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C1%2C64%3BMQ%3D49%3BFQ%3D-135%3BPV4%3D5e-07%2C6.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C108%2C0:63 scaffold351 SAMTools SNP 695011 695011 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C11%2C3%3BMQ%3D24%3BFQ%3D54%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C129:84 scaffold351 SAMTools SNP 695019 695019 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C11%2C3%3BMQ%3D24%3BFQ%3D56%3BPV4%3D0.7%2C1%2C0.4%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C131:86 scaffold351 SAMTools SNP 697918 697918 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C26%2C22%2C14%3BMQ%3D38%3BFQ%3D188%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold351 SAMTools SNP 698070 698070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C28%2C21%3BMQ%3D40%3BFQ%3D195%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold351 SAMTools SNP 698322 698322 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.61%3BPV4%3D1%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C35:38 scaffold351 SAMTools SNP 699081 699081 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D48%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C144%2C0:99 scaffold351 SAMTools SNP 699636 699636 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold351 SAMTools SNP 700055 700055 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C30%2C0:57 scaffold351 SAMTools SNP 700340 700340 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D45%3BFQ%3D-3.77%3BPV4%3D0.4%2C0.0075%2C0.34%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C26:30 scaffold351 SAMTools SNP 700446 700446 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold351 SAMTools SNP 700536 700536 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C105%2C45%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.8e-31%2C0.47%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C255%2C0:99 scaffold351 SAMTools SNP 700691 700691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold351 SAMTools SNP 701392 701392 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold351 SAMTools SNP 701593 701593 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D46.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C85:77 scaffold351 SAMTools SNP 701605 701605 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C54%2C0:99 scaffold351 SAMTools SNP 701629 701629 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C12%2C0:21 scaffold351 SAMTools SNP 702657 702657 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold351 SAMTools SNP 702658 702658 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold351 SAMTools SNP 703613 703613 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold351 SAMTools SNP 704317 704317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 705685 705685 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 705865 705865 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold351 SAMTools SNP 706373 706373 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D38%3BFQ%3D16.1%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C187:46 scaffold351 SAMTools SNP 706865 706865 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold351 SAMTools SNP 706891 706891 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold351 SAMTools SNP 707423 707423 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 710267 710267 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold351 SAMTools SNP 710577 710577 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C70%2C21%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D8.6e-05%2C1%2C6.4e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold351 SAMTools SNP 710583 710583 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C25%2C24%2C16%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.22%2C8.3e-79%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold351 SAMTools SNP 710862 710862 45.5 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold351 SAMTools SNP 715810 715810 15.9 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold351 SAMTools SNP 715811 715811 35.2 . . REF=N;ALT=G,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-16.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C23%2C34%2C51%2C0%2C66:14 scaffold351 SAMTools SNP 716506 716506 74.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D626%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold351 SAMTools SNP 716598 716598 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C90%2C28%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C5.8e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 718295 718295 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C6%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 718349 718349 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C39%2C107%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 724766 724766 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C70%2C76%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C8.4e-66%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 724896 724896 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C124%2C6%2C53%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.38%2C2.2e-74%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold351 SAMTools SNP 725322 725322 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0394%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C2:5 scaffold351 SAMTools SNP 725376 725376 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C27%2C0:51 scaffold351 SAMTools SNP 725481 725481 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C7%3BMQ%3D47%3BFQ%3D115%3BPV4%3D1%2C0.22%2C0.052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C254:99 scaffold351 SAMTools SNP 734677 734677 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D908%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C202%2C86%2C12%3BMQ%3D49%3BFQ%3D109%3BPV4%3D1.6e-08%2C3.5e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold351 SAMTools SNP 734686 734686 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D890%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D227%2C15%2C381%2C265%3BMQ%3D49%3BFQ%3D131%3BPV4%3D1.4e-27%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C230:99 scaffold351 SAMTools SNP 734887 734887 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D925%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C334%2C541%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.38%2C0.00079%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 736790 736790 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.17%2C0.036%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C192:62 scaffold351 SAMTools SNP 737820 737820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D854%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C767%2C87%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 738707 738707 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C46%2C64%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 739330 739330 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C79%2C38%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 739348 739348 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C171%2C29%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 739858 739858 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C31%2C8%2C64%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0043%2C1.1e-105%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold351 SAMTools SNP 740798 740798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C34%2C44%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C2.2e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 740801 740801 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C34%2C44%2C24%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.87%2C1.5e-103%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold351 SAMTools SNP 741541 741541 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C114%2C91%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C3.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 742122 742122 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D857%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C511%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 742218 742218 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C478%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold351 SAMTools SNP 742577 742577 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C120%2C2%2C60%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0036%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold351 SAMTools SNP 742598 742598 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C41%2C1%2C15%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold351 SAMTools SNP 742706 742706 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C24%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C178%2C0:99 scaffold351 SAMTools SNP 742990 742990 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold351 SAMTools SNP 743828 743828 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C61%2C0%2C30%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0028%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold351 SAMTools SNP 744177 744177 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C0%2C25%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold351 SAMTools SNP 744459 744459 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C11%2C18%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.2%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold351 SAMTools SNP 744942 744942 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C124%2C31%2C9%3BMQ%3D50%3BFQ%3D198%3BPV4%3D3.7e-10%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold351 SAMTools SNP 745038 745038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C5%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold351 SAMTools SNP 746825 746825 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold351 SAMTools SNP 746838 746838 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold351 SAMTools SNP 746878 746878 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold351 SAMTools SNP 747319 747319 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold351 SAMTools SNP 747320 747320 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold351 SAMTools SNP 747902 747902 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold352 SAMTools SNP 6137 6137 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 13349 13349 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold352 SAMTools SNP 13358 13358 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C181:99 scaffold352 SAMTools SNP 16001 16001 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C165:59 scaffold352 SAMTools SNP 17129 17129 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold352 SAMTools SNP 19410 19410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold352 SAMTools SNP 25085 25085 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 25106 25106 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 29118 29118 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C3.2e-07%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold352 SAMTools SNP 29144 29144 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.56%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold352 SAMTools SNP 29147 29147 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.55%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold352 SAMTools SNP 31724 31724 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C24%2C0:45 scaffold352 SAMTools SNP 31781 31781 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold352 SAMTools SNP 31841 31841 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D32%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C30%2C0:57 scaffold352 SAMTools SNP 31844 31844 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D32%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C30%2C0:57 scaffold352 SAMTools SNP 35218 35218 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.011%2C0.00036%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold352 SAMTools SNP 35249 35249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C18%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.091%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold352 SAMTools SNP 35276 35276 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C12%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D8.6e-05%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold352 SAMTools SNP 35638 35638 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.064%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold352 SAMTools SNP 35775 35775 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold352 SAMTools SNP 37263 37263 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 40110 40110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C14%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold352 SAMTools SNP 40128 40128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold352 SAMTools SNP 40308 40308 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C213:99 scaffold352 SAMTools SNP 40556 40556 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold352 SAMTools SNP 43259 43259 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold352 SAMTools SNP 43599 43599 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 44010 44010 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C54%2C0:99 scaffold352 SAMTools SNP 44047 44047 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 44359 44359 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold352 SAMTools SNP 44406 44406 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 44414 44414 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 44734 44734 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold352 SAMTools SNP 45549 45549 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold352 SAMTools SNP 46870 46870 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold352 SAMTools SNP 47022 47022 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 47964 47964 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C24%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold352 SAMTools SNP 48175 48175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C36%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold352 SAMTools SNP 51018 51018 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold352 SAMTools SNP 60808 60808 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 74645 74645 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold352 SAMTools SNP 74693 74693 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 76598 76598 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold352 SAMTools SNP 76807 76807 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold352 SAMTools SNP 76910 76910 30.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold352 SAMTools SNP 78511 78511 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold352 SAMTools SNP 78621 78621 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold352 SAMTools SNP 78895 78895 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.21%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold352 SAMTools SNP 78955 78955 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold352 SAMTools SNP 79015 79015 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold352 SAMTools SNP 79676 79676 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold352 SAMTools SNP 80241 80241 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold352 SAMTools SNP 80262 80262 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C149:99 scaffold352 SAMTools SNP 80995 80995 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold352 SAMTools SNP 82638 82638 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold352 SAMTools SNP 82900 82900 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold352 SAMTools SNP 82901 82901 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold352 SAMTools SNP 83282 83282 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold352 SAMTools SNP 83832 83832 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 83964 83964 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold352 SAMTools SNP 84021 84021 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold352 SAMTools SNP 84042 84042 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold352 SAMTools SNP 84558 84558 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold352 SAMTools SNP 85574 85574 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.033%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold352 SAMTools SNP 85583 85583 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.027%2C0.024%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C180:99 scaffold352 SAMTools SNP 89860 89860 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold352 SAMTools SNP 89983 89983 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C27%2C0:51 scaffold352 SAMTools SNP 90052 90052 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold352 SAMTools SNP 90249 90249 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 91665 91665 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 92080 92080 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C38:41 scaffold352 SAMTools SNP 92154 92154 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold352 SAMTools SNP 94780 94780 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold352 SAMTools SNP 95248 95248 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.3%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C185:95 scaffold352 SAMTools SNP 95413 95413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold352 SAMTools SNP 95500 95500 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold352 SAMTools SNP 95714 95714 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.26%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold352 SAMTools SNP 95750 95750 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.35%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold352 SAMTools SNP 96328 96328 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C51%2C0:99 scaffold352 SAMTools SNP 96427 96427 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold352 SAMTools SNP 96676 96676 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold352 SAMTools SNP 96760 96760 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold352 SAMTools SNP 97073 97073 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold352 SAMTools SNP 97116 97116 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold352 SAMTools SNP 98727 98727 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold352 SAMTools SNP 99390 99390 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold352 SAMTools SNP 99399 99399 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 99465 99465 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 99723 99723 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold352 SAMTools SNP 110130 110130 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold352 SAMTools SNP 140899 140899 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold352 SAMTools SNP 160790 160790 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold352 SAMTools SNP 160801 160801 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00094%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold354 SAMTools SNP 3761 3761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 3831 3831 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 3906 3906 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 69830 69830 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 88870 88870 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold354 SAMTools SNP 93923 93923 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold354 SAMTools SNP 95831 95831 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.054%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold354 SAMTools SNP 95850 95850 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C47%2C0%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.3%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 96865 96865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold354 SAMTools SNP 97605 97605 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C39%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 98136 98136 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold354 SAMTools SNP 102508 102508 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 102509 102509 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 102552 102552 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.091%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold354 SAMTools SNP 103084 103084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold354 SAMTools SNP 105081 105081 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold354 SAMTools SNP 106415 106415 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 106496 106496 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 106867 106867 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold354 SAMTools SNP 106915 106915 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 106942 106942 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold354 SAMTools SNP 106993 106993 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold354 SAMTools SNP 107390 107390 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold354 SAMTools SNP 109426 109426 104 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C118%2C204%2C0%2C195:27 scaffold354 SAMTools SNP 109453 109453 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C190:99 scaffold354 SAMTools SNP 110375 110375 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 110390 110390 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 111576 111576 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 111816 111816 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 112100 112100 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold354 SAMTools SNP 112124 112124 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold354 SAMTools SNP 112567 112567 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C71:74 scaffold354 SAMTools SNP 112580 112580 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold354 SAMTools SNP 112664 112664 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold354 SAMTools SNP 125267 125267 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 145484 145484 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold354 SAMTools SNP 185395 185395 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold354 SAMTools SNP 223949 223949 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold354 SAMTools SNP 227470 227470 35.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold354 SAMTools SNP 228268 228268 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C33%2C0:60 scaffold354 SAMTools SNP 228931 228931 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C5.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C31%2C0:52 scaffold354 SAMTools SNP 228952 228952 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold354 SAMTools SNP 229060 229060 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C69%2C0:99 scaffold354 SAMTools SNP 232568 232568 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold354 SAMTools SNP 233522 233522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold354 SAMTools SNP 233531 233531 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold354 SAMTools SNP 233714 233714 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold354 SAMTools SNP 235847 235847 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold354 SAMTools SNP 235993 235993 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold354 SAMTools SNP 236570 236570 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C146:99 scaffold354 SAMTools SNP 236627 236627 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.43%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold354 SAMTools SNP 236640 236640 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 236747 236747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold354 SAMTools SNP 237264 237264 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C3.4e-13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold354 SAMTools SNP 237607 237607 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 237649 237649 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold354 SAMTools SNP 238031 238031 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold354 SAMTools SNP 238182 238182 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold354 SAMTools SNP 238432 238432 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 242189 242189 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold354 SAMTools SNP 242205 242205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold354 SAMTools SNP 242927 242927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 243331 243331 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C233:99 scaffold354 SAMTools SNP 244751 244751 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold354 SAMTools SNP 244769 244769 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold354 SAMTools SNP 244787 244787 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold354 SAMTools SNP 245366 245366 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 246519 246519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold354 SAMTools SNP 246545 246545 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold354 SAMTools SNP 247045 247045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 247119 247119 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.25%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 247168 247168 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C23%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C251:99 scaffold354 SAMTools SNP 247192 247192 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold354 SAMTools SNP 247355 247355 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 247358 247358 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 250127 250127 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold354 SAMTools SNP 250400 250400 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.27%2C1.1e-12%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold354 SAMTools SNP 251404 251404 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold354 SAMTools SNP 251534 251534 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C51%2C0:99 scaffold354 SAMTools SNP 255220 255220 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 255238 255238 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C31%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold354 SAMTools SNP 257420 257420 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold354 SAMTools SNP 257711 257711 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold354 SAMTools SNP 258154 258154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold354 SAMTools SNP 258226 258226 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C102:99 scaffold354 SAMTools SNP 258431 258431 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold354 SAMTools SNP 260033 260033 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold354 SAMTools SNP 260046 260046 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.053%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold354 SAMTools SNP 260048 260048 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C118:99 scaffold354 SAMTools SNP 260242 260242 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C187:99 scaffold354 SAMTools SNP 260337 260337 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 260962 260962 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C35:38 scaffold354 SAMTools SNP 261013 261013 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.2%2C0.031%2C1%2C8.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C174:41 scaffold354 SAMTools SNP 261015 261015 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.042%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C211:39 scaffold354 SAMTools SNP 262230 262230 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 262841 262841 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.11%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold354 SAMTools SNP 262976 262976 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C199:99 scaffold354 SAMTools SNP 262992 262992 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold354 SAMTools SNP 263078 263078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold354 SAMTools SNP 263475 263475 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.081%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C169:99 scaffold354 SAMTools SNP 263670 263670 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C232:99 scaffold354 SAMTools SNP 263677 263677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold354 SAMTools SNP 264352 264352 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold354 SAMTools SNP 264768 264768 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 264975 264975 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold354 SAMTools SNP 265497 265497 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold354 SAMTools SNP 265764 265764 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold354 SAMTools SNP 266018 266018 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold354 SAMTools SNP 266019 266019 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 266551 266551 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 266958 266958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold354 SAMTools SNP 267162 267162 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C8%2C16%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.091%2C7.5e-41%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold354 SAMTools SNP 267258 267258 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold354 SAMTools SNP 267770 267770 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C30%2C0:57 scaffold354 SAMTools SNP 267794 267794 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.38%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C223:99 scaffold354 SAMTools SNP 267800 267800 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.35%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C238:99 scaffold354 SAMTools SNP 268267 268267 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C1%2C5%3BMQ%3D49%3BFQ%3D73%3BPV4%3D8e-06%2C0.15%2C0.0069%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C224:99 scaffold354 SAMTools SNP 268501 268501 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold354 SAMTools SNP 268513 268513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold354 SAMTools SNP 270582 270582 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold354 SAMTools SNP 271666 271666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold354 SAMTools SNP 271963 271963 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 272298 272298 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold354 SAMTools SNP 273023 273023 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold354 SAMTools SNP 275146 275146 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C48%2C0:93 scaffold354 SAMTools SNP 275229 275229 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C244:43 scaffold354 SAMTools SNP 275298 275298 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C207:54 scaffold354 SAMTools SNP 275653 275653 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold354 SAMTools SNP 276944 276944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C44%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 277151 277151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 277173 277173 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.31%2C4e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold354 SAMTools SNP 277352 277352 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold354 SAMTools SNP 278727 278727 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold354 SAMTools SNP 278742 278742 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold354 SAMTools SNP 278988 278988 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 279081 279081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold354 SAMTools SNP 279428 279428 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C16%2C44%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.00017%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold354 SAMTools SNP 279431 279431 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold354 SAMTools SNP 279470 279470 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C1%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.27%2C0.06%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold354 SAMTools SNP 279497 279497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold354 SAMTools SNP 279780 279780 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold354 SAMTools SNP 279783 279783 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 279795 279795 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.058%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 281142 281142 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.47%2C0.04%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold354 SAMTools SNP 281211 281211 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C28%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold354 SAMTools SNP 281984 281984 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold354 SAMTools SNP 282072 282072 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 282108 282108 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold354 SAMTools SNP 282493 282493 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold354 SAMTools SNP 282558 282558 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold354 SAMTools SNP 282559 282559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.042%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold354 SAMTools SNP 282812 282812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold354 SAMTools SNP 282849 282849 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.013%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold354 SAMTools SNP 282899 282899 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 283341 283341 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold354 SAMTools SNP 287741 287741 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold354 SAMTools SNP 287858 287858 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C24%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold354 SAMTools SNP 291375 291375 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold354 SAMTools SNP 291401 291401 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold354 SAMTools SNP 291448 291448 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold354 SAMTools SNP 292065 292065 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 312846 312846 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold354 SAMTools SNP 322852 322852 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold354 SAMTools SNP 324991 324991 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C39%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C6.4e-54%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold354 SAMTools SNP 325058 325058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C9%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C4.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 325555 325555 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C45%2C31%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 326015 326015 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D205%2C42%2C266%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 326266 326266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C48%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C0.0037%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 326284 326284 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.48%2C1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C130:99 scaffold354 SAMTools SNP 329061 329061 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D43.4%3BPV4%3D1%2C0.00042%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C79:73 scaffold354 SAMTools SNP 329282 329282 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C28%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.39%2C6.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C179:91 scaffold354 SAMTools SNP 329714 329714 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C8%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.068%2C6.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold354 SAMTools SNP 330372 330372 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 332279 332279 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C200:99 scaffold354 SAMTools SNP 332848 332848 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 332868 332868 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 342182 342182 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold354 SAMTools SNP 346774 346774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold354 SAMTools SNP 346776 346776 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold354 SAMTools SNP 347446 347446 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold354 SAMTools SNP 347566 347566 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold354 SAMTools SNP 348494 348494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold354 SAMTools SNP 348551 348551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold354 SAMTools SNP 348788 348788 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold354 SAMTools SNP 348806 348806 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold354 SAMTools SNP 351895 351895 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold354 SAMTools SNP 356346 356346 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C26%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.78%2C5.4e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold354 SAMTools SNP 358792 358792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C10%2C45%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 358876 358876 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C42%2C63%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 361408 361408 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold354 SAMTools SNP 361672 361672 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold354 SAMTools SNP 362415 362415 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold354 SAMTools SNP 365104 365104 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold354 SAMTools SNP 365192 365192 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold354 SAMTools SNP 365874 365874 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 367029 367029 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold354 SAMTools SNP 367089 367089 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold354 SAMTools SNP 367667 367667 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold354 SAMTools SNP 369418 369418 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold354 SAMTools SNP 380990 380990 32.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold354 SAMTools SNP 423597 423597 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold354 SAMTools SNP 423900 423900 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold354 SAMTools SNP 486526 486526 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold354 SAMTools SNP 487762 487762 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 492665 492665 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C9.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C154:51 scaffold354 SAMTools SNP 501984 501984 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C25%2C24%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.57%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold354 SAMTools SNP 504068 504068 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C33%2C22%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 504276 504276 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C52%2C13%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 505795 505795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 505849 505849 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 508572 508572 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold354 SAMTools SNP 511881 511881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C42%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold354 SAMTools SNP 511884 511884 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C20%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1.7e-07%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold354 SAMTools SNP 511896 511896 114 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold354 SAMTools SNP 512242 512242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold354 SAMTools SNP 512551 512551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C21%3BMQ%3D50%3BFQ%3D204%3BPV4%3D7.1e-05%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold354 SAMTools SNP 513093 513093 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold354 SAMTools SNP 513129 513129 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C15%2C18%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold354 SAMTools SNP 513513 513513 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C51%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 514673 514673 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C9%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C212:99 scaffold354 SAMTools SNP 514703 514703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold354 SAMTools SNP 515877 515877 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C40%2C3%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 515994 515994 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D60%2C12%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.6%2C1%2C1%2C4.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold354 SAMTools SNP 516012 516012 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.59%2C0.15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold354 SAMTools SNP 516592 516592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C73%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 516697 516697 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C54%2C43%2C21%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0059%2C4e-152%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold354 SAMTools SNP 516802 516802 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C1%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 517165 517165 203 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C60%2C0%2C231%2C42%2C228:99 scaffold354 SAMTools SNP 517269 517269 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.026%2C0.0015%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold354 SAMTools SNP 517474 517474 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C55%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 517652 517652 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C32%2C18%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 517709 517709 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C22%2C54%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 517865 517865 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C62%2C42%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.16%2C0.14%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 518044 518044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 518295 518295 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C19%2C38%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0038%2C5.5e-26%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold354 SAMTools SNP 518372 518372 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C84%2C40%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.011%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 518688 518688 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D207%2C68%2C30%2C28%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.00068%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold354 SAMTools SNP 518745 518745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C319%2C84%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold354 SAMTools SNP 520608 520608 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C123%2C16%2C168%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.00017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 520976 520976 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C38%2C45%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.32%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 520982 520982 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C42%2C45%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C5.8e-06%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 521203 521203 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold354 SAMTools SNP 521739 521739 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold354 SAMTools SNP 528290 528290 42.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold354 SAMTools SNP 555915 555915 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C15%2C9%3BMQ%3D47%3BFQ%3D98%3BPV4%3D1%2C2.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold354 SAMTools SNP 556050 556050 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C68%3BMQ%3D24%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold354 SAMTools SNP 556691 556691 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1871%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C15%2C0:27 scaffold354 SAMTools SNP 565241 565241 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D957%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C692%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C255%2C0:99 scaffold354 SAMTools SNP 582524 582524 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold354 SAMTools SNP 588647 588647 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold354 SAMTools SNP 590496 590496 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold354 SAMTools SNP 591196 591196 42.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold354 SAMTools SNP 591998 591998 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold354 SAMTools SNP 618944 618944 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C8%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.78%2C2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold354 SAMTools SNP 619553 619553 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold354 SAMTools SNP 622050 622050 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold354 SAMTools SNP 630878 630878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold354 SAMTools SNP 630887 630887 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C7%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold354 SAMTools SNP 631189 631189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C68%2C17%3BMQ%3D50%3BFQ%3D-253%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold354 SAMTools SNP 631395 631395 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold354 SAMTools SNP 631660 631660 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C39%2C0:75 scaffold354 SAMTools SNP 631711 631711 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0115%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C9.7e-08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C26:29 scaffold354 SAMTools SNP 631819 631819 67.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold354 SAMTools SNP 632164 632164 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold354 SAMTools SNP 633115 633115 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D45%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold354 SAMTools SNP 633121 633121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D45%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold354 SAMTools SNP 633595 633595 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold354 SAMTools SNP 633596 633596 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold354 SAMTools SNP 634074 634074 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C10%2C6%3BMQ%3D31%3BFQ%3D135%3BPV4%3D0.75%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C176:99 scaffold354 SAMTools SNP 634737 634737 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 634797 634797 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C56%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold354 SAMTools SNP 641232 641232 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C24%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold354 SAMTools SNP 641582 641582 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C4%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold354 SAMTools SNP 641639 641639 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C51%2C17%2C0%3BMQ%3D46%3BFQ%3D69%3BPV4%3D2.6e-08%2C0.24%2C0.00023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold354 SAMTools SNP 641914 641914 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D46%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold354 SAMTools SNP 642862 642862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold354 SAMTools SNP 642922 642922 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C30%2C51%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D7.3e-05%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold354 SAMTools SNP 647697 647697 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 647726 647726 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold354 SAMTools SNP 648551 648551 18.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold354 SAMTools SNP 648581 648581 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 650266 650266 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 650900 650900 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold354 SAMTools SNP 653986 653986 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold354 SAMTools SNP 653989 653989 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold354 SAMTools SNP 654010 654010 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold354 SAMTools SNP 654686 654686 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold354 SAMTools SNP 654725 654725 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.29%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C251:91 scaffold354 SAMTools SNP 655267 655267 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold354 SAMTools SNP 658858 658858 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.057%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 658945 658945 145 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold354 SAMTools SNP 658963 658963 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C245:99 scaffold354 SAMTools SNP 660445 660445 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold354 SAMTools SNP 660473 660473 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 662311 662311 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 662446 662446 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold354 SAMTools SNP 662730 662730 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 662768 662768 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 663130 663130 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold354 SAMTools SNP 663228 663228 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold354 SAMTools SNP 663471 663471 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold354 SAMTools SNP 669471 669471 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0072%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C167:79 scaffold354 SAMTools SNP 669477 669477 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C123:99 scaffold354 SAMTools SNP 673596 673596 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold354 SAMTools SNP 674527 674527 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold354 SAMTools SNP 734831 734831 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 734883 734883 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 735704 735704 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 735719 735719 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 781051 781051 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold354 SAMTools SNP 781069 781069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 781090 781090 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold354 SAMTools SNP 781110 781110 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold354 SAMTools SNP 781459 781459 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold354 SAMTools SNP 781831 781831 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C18%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold354 SAMTools SNP 782698 782698 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 782707 782707 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 782773 782773 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 783111 783111 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold354 SAMTools SNP 784019 784019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C27%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold354 SAMTools SNP 784046 784046 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.068%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold354 SAMTools SNP 784097 784097 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.37%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 784497 784497 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 784542 784542 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C19%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.11%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold354 SAMTools SNP 784873 784873 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold354 SAMTools SNP 784879 784879 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.68%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold354 SAMTools SNP 785394 785394 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C7.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C145:99 scaffold354 SAMTools SNP 785406 785406 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold354 SAMTools SNP 785436 785436 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C10%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold354 SAMTools SNP 785755 785755 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 785806 785806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 786636 786636 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C28%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C252:99 scaffold354 SAMTools SNP 786659 786659 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C4.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C209:71 scaffold354 SAMTools SNP 786708 786708 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold354 SAMTools SNP 786709 786709 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.14%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold354 SAMTools SNP 789253 789253 16.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold354 SAMTools SNP 789326 789326 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold354 SAMTools SNP 789417 789417 8.22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold354 SAMTools SNP 809152 809152 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 809382 809382 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C74:44 scaffold354 SAMTools SNP 810028 810028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1003669 1003669 14.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold354 SAMTools SNP 1016283 1016283 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1016301 1016301 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1018696 1018696 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold354 SAMTools SNP 1028530 1028530 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold354 SAMTools SNP 1038500 1038500 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold354 SAMTools SNP 1057283 1057283 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C246:99 scaffold354 SAMTools SNP 1057316 1057316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D200%2C2%2C77%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 1057648 1057648 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1059380 1059380 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold354 SAMTools SNP 1059429 1059429 138 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C32%2C164%2C0%2C161:27 scaffold354 SAMTools SNP 1061153 1061153 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C54%2C0:99 scaffold354 SAMTools SNP 1069008 1069008 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C194:99 scaffold354 SAMTools SNP 1069107 1069107 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.62%2C5.3e-14%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold354 SAMTools SNP 1069233 1069233 48.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold354 SAMTools SNP 1069246 1069246 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D4.2e-06%2C1.1e-19%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold354 SAMTools SNP 1069557 1069557 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1069575 1069575 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1069903 1069903 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 1069906 1069906 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold354 SAMTools SNP 1069951 1069951 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1069954 1069954 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold354 SAMTools SNP 1070808 1070808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold354 SAMTools SNP 1070897 1070897 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold354 SAMTools SNP 1070938 1070938 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold354 SAMTools SNP 1071286 1071286 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold354 SAMTools SNP 1076151 1076151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 1076166 1076166 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold354 SAMTools SNP 1083473 1083473 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold358 SAMTools SNP 8910 8910 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.28%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C193:99 scaffold358 SAMTools SNP 8934 8934 89.5 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C133%2C167%2C0%2C149:21 scaffold358 SAMTools SNP 9012 9012 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold358 SAMTools SNP 9021 9021 52.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C77%2C71%2C86%2C0%2C80:10 scaffold358 SAMTools SNP 9441 9441 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold358 SAMTools SNP 10904 10904 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 13952 13952 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold358 SAMTools SNP 14415 14415 86.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold358 SAMTools SNP 14799 14799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 44584 44584 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold358 SAMTools SNP 127488 127488 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.056%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold358 SAMTools SNP 129441 129441 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C40:43 scaffold358 SAMTools SNP 149338 149338 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C16%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0084%2C1%2C1%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold358 SAMTools SNP 149490 149490 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C4%2C137%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 150146 150146 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 150160 150160 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C128%2C56%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 150181 150181 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C104%2C17%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C0.35%2C1%2C1.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 150232 150232 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C77%2C0%2C17%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.2%2C0.041%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold358 SAMTools SNP 153047 153047 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C242%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold358 SAMTools SNP 153077 153077 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C6%2C95%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 153104 153104 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C71%2C20%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 153116 153116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C0%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 155089 155089 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold358 SAMTools SNP 157634 157634 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.35%2C1.5e-06%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C59:62 scaffold358 SAMTools SNP 158093 158093 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1839%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1552%2C217%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C4.9e-22%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold358 SAMTools SNP 158710 158710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C2%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold358 SAMTools SNP 158961 158961 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1047%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D451%2C79%2C431%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 160373 160373 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C13:16 scaffold358 SAMTools SNP 160841 160841 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0200%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C1:4 scaffold358 SAMTools SNP 161036 161036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C38%2C387%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold358 SAMTools SNP 161207 161207 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D569%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C503%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold358 SAMTools SNP 161312 161312 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C35%2C17%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.069%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold358 SAMTools SNP 161748 161748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D744%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D369%2C44%2C296%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 162685 162685 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D750%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D384%2C15%2C313%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 166775 166775 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold358 SAMTools SNP 166834 166834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 174259 174259 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.098%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold358 SAMTools SNP 174558 174558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 175456 175456 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00022%2C7.3e-14%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold358 SAMTools SNP 175716 175716 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C44%2C3%2C25%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C7.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold358 SAMTools SNP 176040 176040 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.8e-07%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 176264 176264 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C13%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D6.7e-09%2C5.6e-15%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold358 SAMTools SNP 177496 177496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 182473 182473 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D40%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C33%2C0:63 scaffold358 SAMTools SNP 187027 187027 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 188982 188982 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 194092 194092 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0167%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C232:33 scaffold358 SAMTools SNP 198260 198260 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C5%2C0%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.00019%2C0.45%2C0.0032%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold358 SAMTools SNP 198582 198582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 200322 200322 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold358 SAMTools SNP 202514 202514 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold358 SAMTools SNP 203614 203614 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 203615 203615 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 203650 203650 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold358 SAMTools SNP 204573 204573 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold358 SAMTools SNP 204769 204769 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold358 SAMTools SNP 206973 206973 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold358 SAMTools SNP 207268 207268 64.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold358 SAMTools SNP 211962 211962 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold358 SAMTools SNP 212032 212032 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold358 SAMTools SNP 215762 215762 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold358 SAMTools SNP 215832 215832 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold358 SAMTools SNP 215838 215838 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold358 SAMTools SNP 216331 216331 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold358 SAMTools SNP 216782 216782 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold358 SAMTools SNP 221459 221459 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.34%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C49:37 scaffold358 SAMTools SNP 221838 221838 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 223046 223046 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C34%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.31%2C0.3%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C239:99 scaffold358 SAMTools SNP 223874 223874 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C245:99 scaffold358 SAMTools SNP 223886 223886 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold358 SAMTools SNP 223907 223907 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C235:82 scaffold358 SAMTools SNP 224501 224501 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.42%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold358 SAMTools SNP 224504 224504 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C10%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.7%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold358 SAMTools SNP 228813 228813 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold358 SAMTools SNP 236321 236321 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold358 SAMTools SNP 248551 248551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold358 SAMTools SNP 257589 257589 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold358 SAMTools SNP 264513 264513 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C2%2C26%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold358 SAMTools SNP 271664 271664 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C243:99 scaffold358 SAMTools SNP 271829 271829 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold361 SAMTools SNP 1819 1819 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold361 SAMTools SNP 1915 1915 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C9.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C28%2C0:53 scaffold361 SAMTools SNP 4339 4339 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold361 SAMTools SNP 4369 4369 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold361 SAMTools SNP 8369 8369 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold361 SAMTools SNP 9570 9570 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold361 SAMTools SNP 10882 10882 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold361 SAMTools SNP 11823 11823 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C201:28 scaffold361 SAMTools SNP 17882 17882 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold361 SAMTools SNP 17886 17886 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold361 SAMTools SNP 87393 87393 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0:39 scaffold361 SAMTools SNP 87597 87597 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C36%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C250%2C0:99 scaffold361 SAMTools SNP 87747 87747 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold361 SAMTools SNP 88285 88285 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold361 SAMTools SNP 88309 88309 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C0.067%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold361 SAMTools SNP 89601 89601 111 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C33%2C0%2C138%2C16%2C135:63 scaffold361 SAMTools SNP 90064 90064 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold361 SAMTools SNP 90087 90087 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold361 SAMTools SNP 111139 111139 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.018%2C0.00024%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C158:64 scaffold361 SAMTools SNP 111215 111215 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold361 SAMTools SNP 124012 124012 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold361 SAMTools SNP 164508 164508 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 164513 164513 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold361 SAMTools SNP 167508 167508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C13%2C43%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 167585 167585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C86%2C14%2C68%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.064%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 167606 167606 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C132%2C6%2C90%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00011%2C6.1e-05%2C0.078%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 169353 169353 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C71%2C0%2C34%3BMQ%3D50%3BFQ%3D77%3BPV4%3D9.2e-08%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold361 SAMTools SNP 169365 169365 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C35%2C63%3BMQ%3D50%3BFQ%3D140%3BPV4%3D3.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold361 SAMTools SNP 169425 169425 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C24%2C39%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.15%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold361 SAMTools SNP 169602 169602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 170037 170037 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D3%2C3%2C13%2C64%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.083%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold361 SAMTools SNP 170219 170219 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C5%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold361 SAMTools SNP 170252 170252 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold361 SAMTools SNP 170291 170291 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold361 SAMTools SNP 170295 170295 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold361 SAMTools SNP 170948 170948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold361 SAMTools SNP 170951 170951 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold361 SAMTools SNP 171995 171995 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold361 SAMTools SNP 173029 173029 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 174312 174312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C75%2C16%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 174330 174330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C54%2C22%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 176497 176497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 177136 177136 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C39%2C2%2C25%3BMQ%3D50%3BFQ%3D147%3BPV4%3D3e-08%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold361 SAMTools SNP 177157 177157 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D60%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D4.3e-06%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold361 SAMTools SNP 177759 177759 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 177795 177795 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D45%2C30%2C17%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0048%2C1.2e-06%2C1%2C4.6e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold361 SAMTools SNP 178200 178200 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold361 SAMTools SNP 179118 179118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 179166 179166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C172%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 181162 181162 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C36%2C38%2C43%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.0075%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 181217 181217 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C46%2C21%2C40%3BMQ%3D41%3BFQ%3D173%3BPV4%3D0.0041%2C1%2C0.47%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold361 SAMTools SNP 181261 181261 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C77%2C19%2C44%3BMQ%3D42%3BFQ%3D60%3BPV4%3D0.62%2C1.9e-62%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold361 SAMTools SNP 182035 182035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C12%2C128%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.15%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 182907 182907 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C146%2C23%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 182917 182917 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C136%2C25%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 183279 183279 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C24%2C1%2C21%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.22%2C1.7e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold361 SAMTools SNP 189415 189415 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 189418 189418 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 190441 190441 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold361 SAMTools SNP 190451 190451 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C0.44%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold361 SAMTools SNP 191388 191388 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold361 SAMTools SNP 192066 192066 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 194147 194147 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D21%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.00047%2C1.3e-09%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold361 SAMTools SNP 196883 196883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 197618 197618 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C54%2C0%2C55%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1.4e-13%2C1%2C1%2C4.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold361 SAMTools SNP 203302 203302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 203493 203493 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D34%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.57%2C0.0004%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold361 SAMTools SNP 205306 205306 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold361 SAMTools SNP 205554 205554 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold361 SAMTools SNP 205563 205563 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.54%2C0.15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold361 SAMTools SNP 205665 205665 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 207857 207857 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C9%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 207920 207920 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C300%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 210820 210820 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold361 SAMTools SNP 224036 224036 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold361 SAMTools SNP 224043 224043 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.088%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold361 SAMTools SNP 224059 224059 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold361 SAMTools SNP 224072 224072 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold361 SAMTools SNP 237309 237309 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold361 SAMTools SNP 237948 237948 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D627%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D356%2C127%2C17%2C75%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1.7e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold361 SAMTools SNP 237984 237984 22.4 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D2587%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-40;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C23%2C10%2C54%2C0%2C48:23 scaffold361 SAMTools SNP 238886 238886 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 238945 238945 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2719%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D856%2C599%2C823%2C441%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 240306 240306 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 241185 241185 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold361 SAMTools SNP 241196 241196 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold361 SAMTools SNP 241241 241241 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold361 SAMTools SNP 241377 241377 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold361 SAMTools SNP 241393 241393 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold361 SAMTools SNP 241424 241424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 241734 241734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold361 SAMTools SNP 241963 241963 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 241980 241980 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold361 SAMTools SNP 242458 242458 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold361 SAMTools SNP 242741 242741 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold361 SAMTools SNP 242934 242934 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 242944 242944 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 242965 242965 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00081%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold361 SAMTools SNP 243227 243227 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold361 SAMTools SNP 244247 244247 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.058%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold361 SAMTools SNP 244252 244252 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold361 SAMTools SNP 244683 244683 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold361 SAMTools SNP 244839 244839 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold361 SAMTools SNP 245502 245502 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C62:65 scaffold361 SAMTools SNP 245831 245831 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.48%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold361 SAMTools SNP 248027 248027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold361 SAMTools SNP 249620 249620 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold361 SAMTools SNP 249971 249971 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold361 SAMTools SNP 250022 250022 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold361 SAMTools SNP 250392 250392 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold361 SAMTools SNP 250962 250962 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold361 SAMTools SNP 252978 252978 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold361 SAMTools SNP 254685 254685 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.01%2C0.00048%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C232:99 scaffold361 SAMTools SNP 254799 254799 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold361 SAMTools SNP 254805 254805 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold361 SAMTools SNP 255454 255454 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C3%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.018%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold361 SAMTools SNP 255481 255481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold361 SAMTools SNP 255517 255517 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C33%2C5%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.76%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold361 SAMTools SNP 256112 256112 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C2%2C35%3BMQ%3D50%3BFQ%3D197%3BPV4%3D4.7e-10%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold361 SAMTools SNP 256139 256139 189 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C215:99 scaffold361 SAMTools SNP 256453 256453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold361 SAMTools SNP 256492 256492 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C27%2C0:51 scaffold361 SAMTools SNP 256736 256736 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold361 SAMTools SNP 265448 265448 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C7%2C22%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.24%2C9.7e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold361 SAMTools SNP 265490 265490 59.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold361 SAMTools SNP 265507 265507 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.19%2C2.7e-08%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold361 SAMTools SNP 265607 265607 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C87%2C0:99 scaffold361 SAMTools SNP 268900 268900 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C29%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C157%2C0:99 scaffold361 SAMTools SNP 269059 269059 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C7%2C43%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.74%2C1.8e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold361 SAMTools SNP 269511 269511 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold361 SAMTools SNP 284352 284352 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C0%2C30%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1.2e-11%2C8.8e-22%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold361 SAMTools SNP 285694 285694 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D619%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold361 SAMTools SNP 285784 285784 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold361 SAMTools SNP 286147 286147 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1389%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold361 SAMTools SNP 286230 286230 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D970%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold361 SAMTools SNP 286258 286258 63.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D640%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold361 SAMTools SNP 286510 286510 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D876%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C30%2C0:57 scaffold361 SAMTools SNP 286813 286813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold361 SAMTools SNP 287347 287347 71.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold361 SAMTools SNP 287604 287604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 287622 287622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C79%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold361 SAMTools SNP 287884 287884 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 296216 296216 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold361 SAMTools SNP 296276 296276 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold361 SAMTools SNP 297568 297568 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold361 SAMTools SNP 297589 297589 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold361 SAMTools SNP 298699 298699 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold361 SAMTools SNP 299894 299894 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold361 SAMTools SNP 299938 299938 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 300462 300462 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.00026%2C3.6e-21%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C205:67 scaffold361 SAMTools SNP 300704 300704 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C2e-06%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C32:35 scaffold361 SAMTools SNP 302270 302270 34.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold361 SAMTools SNP 302341 302341 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold361 SAMTools SNP 304435 304435 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C96%2C9%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 305241 305241 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 305554 305554 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 306251 306251 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.11%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold361 SAMTools SNP 306273 306273 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold361 SAMTools SNP 306737 306737 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C183%2C11%2C23%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1.4e-06%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold361 SAMTools SNP 306971 306971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold361 SAMTools SNP 307230 307230 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold361 SAMTools SNP 309119 309119 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 309260 309260 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold361 SAMTools SNP 309560 309560 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold361 SAMTools SNP 309632 309632 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C13%2C50%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C2e-36%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 309747 309747 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C24%2C0:45 scaffold361 SAMTools SNP 309866 309866 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 310532 310532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.44%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 310547 310547 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.072%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 310753 310753 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C38%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold361 SAMTools SNP 311235 311235 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold361 SAMTools SNP 311884 311884 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.032%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 313217 313217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 316357 316357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold361 SAMTools SNP 316728 316728 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold361 SAMTools SNP 316869 316869 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold361 SAMTools SNP 318367 318367 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 320987 320987 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold361 SAMTools SNP 320992 320992 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold361 SAMTools SNP 323342 323342 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 323852 323852 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold361 SAMTools SNP 324224 324224 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C34:37 scaffold361 SAMTools SNP 324230 324230 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold361 SAMTools SNP 327965 327965 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 328579 328579 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 328868 328868 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold361 SAMTools SNP 329261 329261 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold361 SAMTools SNP 329321 329321 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C9%2C0:16 scaffold361 SAMTools SNP 329491 329491 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold361 SAMTools SNP 330488 330488 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold361 SAMTools SNP 330517 330517 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold361 SAMTools SNP 330524 330524 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold361 SAMTools SNP 331098 331098 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold361 SAMTools SNP 331187 331187 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold361 SAMTools SNP 331394 331394 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold361 SAMTools SNP 331412 331412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold361 SAMTools SNP 331421 331421 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 331448 331448 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C230:82 scaffold361 SAMTools SNP 331835 331835 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 332335 332335 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 333020 333020 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold361 SAMTools SNP 333098 333098 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold361 SAMTools SNP 333120 333120 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold361 SAMTools SNP 335522 335522 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold361 SAMTools SNP 336646 336646 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold361 SAMTools SNP 336667 336667 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 336706 336706 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 337585 337585 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold361 SAMTools SNP 338675 338675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold361 SAMTools SNP 338694 338694 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C237:99 scaffold361 SAMTools SNP 338711 338711 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold361 SAMTools SNP 339364 339364 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold361 SAMTools SNP 339392 339392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 339911 339911 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold361 SAMTools SNP 340165 340165 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold361 SAMTools SNP 340225 340225 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 340412 340412 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold361 SAMTools SNP 340477 340477 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C27%2C0:51 scaffold361 SAMTools SNP 340540 340540 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold361 SAMTools SNP 347395 347395 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold361 SAMTools SNP 347761 347761 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold361 SAMTools SNP 351140 351140 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold361 SAMTools SNP 352276 352276 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold361 SAMTools SNP 353016 353016 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.21%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold361 SAMTools SNP 354449 354449 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold361 SAMTools SNP 354457 354457 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold361 SAMTools SNP 355080 355080 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold361 SAMTools SNP 365400 365400 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 365753 365753 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold361 SAMTools SNP 370415 370415 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold361 SAMTools SNP 370436 370436 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold361 SAMTools SNP 370472 370472 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold361 SAMTools SNP 371131 371131 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D48%3BFQ%3D115%3BPV4%3D0.52%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold361 SAMTools SNP 375558 375558 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 375567 375567 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold361 SAMTools SNP 375911 375911 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C1%3BMQ%3D47%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold361 SAMTools SNP 380565 380565 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C13%2C0%3BMQ%3D48%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C246:99 scaffold361 SAMTools SNP 382146 382146 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold361 SAMTools SNP 382164 382164 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold361 SAMTools SNP 382212 382212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold361 SAMTools SNP 383560 383560 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold361 SAMTools SNP 387537 387537 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.035%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold361 SAMTools SNP 389658 389658 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold361 SAMTools SNP 398148 398148 9.97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold361 SAMTools SNP 400038 400038 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold361 SAMTools SNP 402916 402916 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold361 SAMTools SNP 402967 402967 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold361 SAMTools SNP 404280 404280 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold361 SAMTools SNP 404289 404289 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C163:86 scaffold361 SAMTools SNP 404322 404322 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 448462 448462 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.42%2C0.22%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C129:99 scaffold361 SAMTools SNP 448632 448632 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.099%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold361 SAMTools SNP 458627 458627 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold361 SAMTools SNP 458780 458780 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C3%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.17%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold361 SAMTools SNP 460205 460205 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold361 SAMTools SNP 460354 460354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold361 SAMTools SNP 460866 460866 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.49%2C0.011%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C228:92 scaffold361 SAMTools SNP 461300 461300 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold361 SAMTools SNP 461888 461888 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold361 SAMTools SNP 465088 465088 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold361 SAMTools SNP 465892 465892 219 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C51%2C0%2C242%2C29%2C239:99 scaffold361 SAMTools SNP 466066 466066 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C81%2C0:99 scaffold361 SAMTools SNP 467245 467245 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C3%3BMQ%3D45%3BFQ%3D102%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold361 SAMTools SNP 472885 472885 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold361 SAMTools SNP 474879 474879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C94%2C12%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.73%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold361 SAMTools SNP 474900 474900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C77%2C24%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.79%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold361 SAMTools SNP 476307 476307 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 476505 476505 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C19%2C20%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.06%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold361 SAMTools SNP 478098 478098 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.036%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold361 SAMTools SNP 478117 478117 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold361 SAMTools SNP 478137 478137 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C217%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold361 SAMTools SNP 481548 481548 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold361 SAMTools SNP 481611 481611 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C0.19%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold361 SAMTools SNP 484740 484740 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold361 SAMTools SNP 488540 488540 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold361 SAMTools SNP 488547 488547 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold361 SAMTools SNP 489184 489184 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold361 SAMTools SNP 489332 489332 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.36%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold361 SAMTools SNP 489898 489898 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 490200 490200 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 490230 490230 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold361 SAMTools SNP 491860 491860 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold361 SAMTools SNP 492018 492018 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold361 SAMTools SNP 492042 492042 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold361 SAMTools SNP 492102 492102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 492423 492423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 492730 492730 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C111:36 scaffold361 SAMTools SNP 493071 493071 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold361 SAMTools SNP 493182 493182 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0019%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold361 SAMTools SNP 493185 493185 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold361 SAMTools SNP 495263 495263 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 514644 514644 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 517544 517544 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.18%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold361 SAMTools SNP 518483 518483 217 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5%2C228%2C0%2C225:81 scaffold361 SAMTools SNP 518485 518485 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold361 SAMTools SNP 518699 518699 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C18%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold361 SAMTools SNP 519047 519047 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold361 SAMTools SNP 519071 519071 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold361 SAMTools SNP 519527 519527 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C204:71 scaffold361 SAMTools SNP 519549 519549 19.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold361 SAMTools SNP 519875 519875 99.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold361 SAMTools SNP 519887 519887 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 519971 519971 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold361 SAMTools SNP 520258 520258 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold361 SAMTools SNP 520514 520514 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C9%2C30%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1.2e-08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 520659 520659 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold361 SAMTools SNP 520661 520661 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold361 SAMTools SNP 522525 522525 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C249:99 scaffold361 SAMTools SNP 523157 523157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C12%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.3%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold361 SAMTools SNP 524387 524387 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold361 SAMTools SNP 561875 561875 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold361 SAMTools SNP 564267 564267 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 564312 564312 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 565357 565357 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold361 SAMTools SNP 565374 565374 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold361 SAMTools SNP 565845 565845 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.42%2C0.013%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold361 SAMTools SNP 565849 565849 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold361 SAMTools SNP 566257 566257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 566284 566284 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 567469 567469 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold361 SAMTools SNP 567783 567783 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold361 SAMTools SNP 568014 568014 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D0.29%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C79:66 scaffold361 SAMTools SNP 570064 570064 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold361 SAMTools SNP 570377 570377 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 571474 571474 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.00062%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C240:99 scaffold361 SAMTools SNP 571540 571540 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold361 SAMTools SNP 571997 571997 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold361 SAMTools SNP 572082 572082 57.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold361 SAMTools SNP 573831 573831 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold361 SAMTools SNP 574519 574519 45.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold361 SAMTools SNP 574636 574636 14.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold361 SAMTools SNP 574854 574854 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C8.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold361 SAMTools SNP 577860 577860 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 577879 577879 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold361 SAMTools SNP 582240 582240 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 582242 582242 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 582288 582288 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 582577 582577 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold361 SAMTools SNP 582649 582649 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold361 SAMTools SNP 583205 583205 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold361 SAMTools SNP 583207 583207 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold361 SAMTools SNP 583216 583216 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C38:41 scaffold361 SAMTools SNP 583285 583285 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold361 SAMTools SNP 583356 583356 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold361 SAMTools SNP 583362 583362 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold361 SAMTools SNP 584180 584180 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 584227 584227 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 585234 585234 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold361 SAMTools SNP 585783 585783 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold361 SAMTools SNP 585784 585784 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold361 SAMTools SNP 585797 585797 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 585997 585997 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold361 SAMTools SNP 586012 586012 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold361 SAMTools SNP 586400 586400 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold361 SAMTools SNP 586406 586406 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C69:72 scaffold361 SAMTools SNP 586478 586478 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C15%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold361 SAMTools SNP 587049 587049 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.00068%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold361 SAMTools SNP 587088 587088 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold361 SAMTools SNP 587654 587654 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold361 SAMTools SNP 588292 588292 52.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold361 SAMTools SNP 588754 588754 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold361 SAMTools SNP 601154 601154 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.43%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C41:44 scaffold361 SAMTools SNP 602994 602994 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold361 SAMTools SNP 603003 603003 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C238:99 scaffold361 SAMTools SNP 603340 603340 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold361 SAMTools SNP 603361 603361 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold361 SAMTools SNP 604132 604132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold361 SAMTools SNP 604500 604500 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold361 SAMTools SNP 605864 605864 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 605933 605933 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold361 SAMTools SNP 605942 605942 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00071%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold361 SAMTools SNP 606419 606419 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold361 SAMTools SNP 606425 606425 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C36:39 scaffold361 SAMTools SNP 606473 606473 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold361 SAMTools SNP 606512 606512 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold361 SAMTools SNP 606931 606931 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold361 SAMTools SNP 607080 607080 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold361 SAMTools SNP 607363 607363 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold361 SAMTools SNP 607379 607379 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold361 SAMTools SNP 607772 607772 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold361 SAMTools SNP 607794 607794 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold361 SAMTools SNP 608121 608121 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold361 SAMTools SNP 608367 608367 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold361 SAMTools SNP 609019 609019 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold361 SAMTools SNP 609078 609078 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold361 SAMTools SNP 609124 609124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold361 SAMTools SNP 610200 610200 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold363 SAMTools SNP 5140 5140 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.11%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C119:99 scaffold363 SAMTools SNP 6660 6660 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold363 SAMTools SNP 8950 8950 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C7%3BMQ%3D44%3BFQ%3D55%3BPV4%3D0.62%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C179:85 scaffold363 SAMTools SNP 16055 16055 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C27%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold363 SAMTools SNP 16070 16070 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.1%2C0.47%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold363 SAMTools SNP 16112 16112 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold363 SAMTools SNP 16856 16856 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 16899 16899 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 18318 18318 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C27%2C0:51 scaffold363 SAMTools SNP 18468 18468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold363 SAMTools SNP 18489 18489 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold363 SAMTools SNP 18710 18710 172 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C44%2C23%2C193%2C0%2C190:39 scaffold363 SAMTools SNP 19321 19321 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C24%3BMQ%3D48%3BFQ%3D145%3BPV4%3D1%2C1.8e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold363 SAMTools SNP 22058 22058 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold363 SAMTools SNP 22223 22223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold363 SAMTools SNP 22244 22244 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold363 SAMTools SNP 23240 23240 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold363 SAMTools SNP 23293 23293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 24553 24553 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold363 SAMTools SNP 24947 24947 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold363 SAMTools SNP 24952 24952 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.009%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold363 SAMTools SNP 24971 24971 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold363 SAMTools SNP 24992 24992 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold363 SAMTools SNP 25007 25007 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold363 SAMTools SNP 26672 26672 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 26687 26687 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 26786 26786 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold363 SAMTools SNP 30198 30198 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold363 SAMTools SNP 48354 48354 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold363 SAMTools SNP 49390 49390 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold363 SAMTools SNP 57892 57892 33.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold363 SAMTools SNP 58340 58340 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold363 SAMTools SNP 58367 58367 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C66:69 scaffold363 SAMTools SNP 58376 58376 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.0018%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold363 SAMTools SNP 58974 58974 165 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C57%2C255%2C0%2C254:57 scaffold363 SAMTools SNP 59628 59628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold363 SAMTools SNP 59993 59993 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold363 SAMTools SNP 60027 60027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold363 SAMTools SNP 60069 60069 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold363 SAMTools SNP 60417 60417 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold363 SAMTools SNP 71063 71063 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C147:28 scaffold363 SAMTools SNP 71294 71294 51.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold363 SAMTools SNP 71346 71346 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold363 SAMTools SNP 72150 72150 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold363 SAMTools SNP 77503 77503 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold363 SAMTools SNP 77504 77504 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold363 SAMTools SNP 84316 84316 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 95420 95420 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 95985 95985 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold363 SAMTools SNP 96105 96105 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold363 SAMTools SNP 127008 127008 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold363 SAMTools SNP 128800 128800 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold363 SAMTools SNP 128910 128910 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold363 SAMTools SNP 130593 130593 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold363 SAMTools SNP 130614 130614 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 130721 130721 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 130723 130723 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 132915 132915 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 134826 134826 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 142641 142641 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold363 SAMTools SNP 144993 144993 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold363 SAMTools SNP 151047 151047 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold363 SAMTools SNP 151448 151448 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold363 SAMTools SNP 151641 151641 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0042%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.018%2C0.012%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C210:34 scaffold363 SAMTools SNP 151876 151876 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold363 SAMTools SNP 151881 151881 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold363 SAMTools SNP 151934 151934 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold363 SAMTools SNP 151953 151953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold363 SAMTools SNP 152837 152837 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold363 SAMTools SNP 153592 153592 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 153846 153846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 154296 154296 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 154326 154326 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold363 SAMTools SNP 155252 155252 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold363 SAMTools SNP 155797 155797 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold363 SAMTools SNP 156036 156036 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 158930 158930 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 158942 158942 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 166718 166718 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C18:21 scaffold363 SAMTools SNP 166751 166751 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold363 SAMTools SNP 166807 166807 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold363 SAMTools SNP 167637 167637 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 167640 167640 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 167799 167799 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold363 SAMTools SNP 168128 168128 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold363 SAMTools SNP 168137 168137 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 182608 182608 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold363 SAMTools SNP 197079 197079 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold363 SAMTools SNP 197246 197246 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold363 SAMTools SNP 197279 197279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C34%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold363 SAMTools SNP 197602 197602 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C60%2C0:99 scaffold363 SAMTools SNP 197622 197622 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C69%2C0:99 scaffold363 SAMTools SNP 197898 197898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold363 SAMTools SNP 198027 198027 9.08 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold363 SAMTools SNP 198238 198238 38.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold363 SAMTools SNP 198355 198355 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold363 SAMTools SNP 198361 198361 44.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold363 SAMTools SNP 203499 203499 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold363 SAMTools SNP 212349 212349 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C54%2C0:99 scaffold363 SAMTools SNP 226270 226270 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold363 SAMTools SNP 226865 226865 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C39%2C0:75 scaffold363 SAMTools SNP 232208 232208 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold363 SAMTools SNP 232455 232455 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold363 SAMTools SNP 232473 232473 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold363 SAMTools SNP 233184 233184 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C69%2C0:99 scaffold363 SAMTools SNP 233916 233916 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold363 SAMTools SNP 236736 236736 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold363 SAMTools SNP 236742 236742 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold363 SAMTools SNP 239100 239100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold363 SAMTools SNP 239283 239283 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold363 SAMTools SNP 239307 239307 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold363 SAMTools SNP 239531 239531 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold363 SAMTools SNP 240013 240013 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.012%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C204:52 scaffold363 SAMTools SNP 240018 240018 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.49%2C0.0024%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C231:64 scaffold363 SAMTools SNP 244820 244820 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold363 SAMTools SNP 245510 245510 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 245522 245522 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 246439 246439 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 246457 246457 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 247497 247497 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 248023 248023 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 297044 297044 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold363 SAMTools SNP 297269 297269 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 297888 297888 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold363 SAMTools SNP 298074 298074 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold363 SAMTools SNP 346043 346043 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold363 SAMTools SNP 357330 357330 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold363 SAMTools SNP 443860 443860 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold363 SAMTools SNP 451661 451661 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold363 SAMTools SNP 462491 462491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D619%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold363 SAMTools SNP 463061 463061 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold363 SAMTools SNP 467184 467184 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold363 SAMTools SNP 471455 471455 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold363 SAMTools SNP 471487 471487 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold363 SAMTools SNP 471950 471950 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.24%2C0.4%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C146:99 scaffold363 SAMTools SNP 471995 471995 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C190:69 scaffold363 SAMTools SNP 472049 472049 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold363 SAMTools SNP 472065 472065 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold363 SAMTools SNP 472928 472928 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold363 SAMTools SNP 472932 472932 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 473194 473194 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 474957 474957 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 475385 475385 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold363 SAMTools SNP 475391 475391 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 481571 481571 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C44%2C36%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D2.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold363 SAMTools SNP 482497 482497 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C35%2C9%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 482735 482735 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C27%2C3%2C5%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold363 SAMTools SNP 482743 482743 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C28%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 483384 483384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold363 SAMTools SNP 483422 483422 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C91:94 scaffold363 SAMTools SNP 487093 487093 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C22%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 488542 488542 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.42%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold363 SAMTools SNP 488994 488994 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 489513 489513 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold363 SAMTools SNP 490317 490317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 490380 490380 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C32:35 scaffold363 SAMTools SNP 493376 493376 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 503467 503467 27.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold363 SAMTools SNP 503725 503725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1038%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C448%2C48%2C230%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 504276 504276 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C27%2C88%2C44%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.093%2C3.6e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold363 SAMTools SNP 505281 505281 22.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold363 SAMTools SNP 506874 506874 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1037%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D366%2C118%2C461%2C76%3BMQ%3D50%3BFQ%3D106%3BPV4%3D4.3e-05%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold363 SAMTools SNP 506982 506982 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D836%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C38:41 scaffold363 SAMTools SNP 507138 507138 114 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C51%2C0%2C125%2C16%2C122:99 scaffold363 SAMTools SNP 509670 509670 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.00066%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold363 SAMTools SNP 509900 509900 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C197:99 scaffold363 SAMTools SNP 509991 509991 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.8e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C121:47 scaffold363 SAMTools SNP 512235 512235 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 519973 519973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold363 SAMTools SNP 520328 520328 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold363 SAMTools SNP 523468 523468 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold363 SAMTools SNP 523984 523984 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold363 SAMTools SNP 524024 524024 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold363 SAMTools SNP 524028 524028 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold363 SAMTools SNP 526023 526023 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 527332 527332 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 528858 528858 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold363 SAMTools SNP 529335 529335 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold363 SAMTools SNP 532109 532109 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold363 SAMTools SNP 533659 533659 93.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D41%3BFQ%3D-32%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C5%2C0:9 scaffold363 SAMTools SNP 533806 533806 58.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C6%2C0%2C7%3BMQ%3D26%3BFQ%3D-29%3BPV4%3D0.47%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C2%2C0:5 scaffold363 SAMTools SNP 547620 547620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 547965 547965 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00016%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C151:47 scaffold363 SAMTools SNP 548057 548057 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold363 SAMTools SNP 548936 548936 82.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold363 SAMTools SNP 548984 548984 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C227:60 scaffold363 SAMTools SNP 553503 553503 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold363 SAMTools SNP 556038 556038 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 560731 560731 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold363 SAMTools SNP 563691 563691 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 565050 565050 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.22%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold363 SAMTools SNP 566795 566795 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 566813 566813 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.14%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 566852 566852 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 567659 567659 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.041%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 568273 568273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.24%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold363 SAMTools SNP 571412 571412 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold363 SAMTools SNP 587873 587873 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold363 SAMTools SNP 588472 588472 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C200:99 scaffold363 SAMTools SNP 588577 588577 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold363 SAMTools SNP 588594 588594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold363 SAMTools SNP 588914 588914 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C249:99 scaffold363 SAMTools SNP 588918 588918 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00014%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold363 SAMTools SNP 588963 588963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold364 SAMTools SNP 13592 13592 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 13657 13657 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 18424 18424 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold364 SAMTools SNP 22984 22984 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold364 SAMTools SNP 30828 30828 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C35:38 scaffold364 SAMTools SNP 30867 30867 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold364 SAMTools SNP 31193 31193 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold364 SAMTools SNP 33768 33768 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold364 SAMTools SNP 33941 33941 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold364 SAMTools SNP 33990 33990 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C231:48 scaffold364 SAMTools SNP 34995 34995 98.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold364 SAMTools SNP 35118 35118 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D38%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C0.22%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C29:32 scaffold364 SAMTools SNP 35377 35377 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold364 SAMTools SNP 35419 35419 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold364 SAMTools SNP 35783 35783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 37524 37524 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold364 SAMTools SNP 37892 37892 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold364 SAMTools SNP 38466 38466 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold364 SAMTools SNP 39497 39497 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold364 SAMTools SNP 39599 39599 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold364 SAMTools SNP 41152 41152 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold364 SAMTools SNP 41523 41523 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 41553 41553 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold364 SAMTools SNP 41962 41962 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 41978 41978 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 42991 42991 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 43000 43000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 43253 43253 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 43266 43266 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 43430 43430 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold364 SAMTools SNP 43944 43944 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold364 SAMTools SNP 44331 44331 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold364 SAMTools SNP 44552 44552 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 44576 44576 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 44835 44835 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold364 SAMTools SNP 45180 45180 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold364 SAMTools SNP 45572 45572 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold364 SAMTools SNP 46027 46027 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold364 SAMTools SNP 46077 46077 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C69:55 scaffold364 SAMTools SNP 46458 46458 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold364 SAMTools SNP 48255 48255 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold364 SAMTools SNP 48531 48531 98 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C124%2C250%2C0%2C238:45 scaffold364 SAMTools SNP 48799 48799 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.46%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold364 SAMTools SNP 48826 48826 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.15%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold364 SAMTools SNP 50033 50033 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.68%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold364 SAMTools SNP 51055 51055 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold364 SAMTools SNP 52185 52185 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold364 SAMTools SNP 52221 52221 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold364 SAMTools SNP 52869 52869 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold364 SAMTools SNP 52875 52875 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold364 SAMTools SNP 52900 52900 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold364 SAMTools SNP 52905 52905 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold364 SAMTools SNP 52949 52949 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold364 SAMTools SNP 53236 53236 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold364 SAMTools SNP 53498 53498 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold364 SAMTools SNP 53532 53532 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 53778 53778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold364 SAMTools SNP 54158 54158 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 54164 54164 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 55102 55102 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold364 SAMTools SNP 55285 55285 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold364 SAMTools SNP 55300 55300 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 55393 55393 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold364 SAMTools SNP 55405 55405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold364 SAMTools SNP 57388 57388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold364 SAMTools SNP 57405 57405 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 58555 58555 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C228:99 scaffold364 SAMTools SNP 58581 58581 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C231:99 scaffold364 SAMTools SNP 59303 59303 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.52%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold364 SAMTools SNP 59973 59973 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 60120 60120 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 60335 60335 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 61888 61888 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold364 SAMTools SNP 65821 65821 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.52%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold364 SAMTools SNP 65865 65865 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold364 SAMTools SNP 65897 65897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold364 SAMTools SNP 66235 66235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C18%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.53%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold364 SAMTools SNP 66690 66690 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.089%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold364 SAMTools SNP 66761 66761 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold364 SAMTools SNP 66955 66955 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold364 SAMTools SNP 66973 66973 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold364 SAMTools SNP 73069 73069 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold364 SAMTools SNP 99838 99838 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 99964 99964 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 104353 104353 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C244:99 scaffold364 SAMTools SNP 115126 115126 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.081%2C1%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold364 SAMTools SNP 115420 115420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 117356 117356 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold364 SAMTools SNP 119263 119263 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C170:99 scaffold364 SAMTools SNP 123351 123351 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold364 SAMTools SNP 123381 123381 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold364 SAMTools SNP 123765 123765 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold364 SAMTools SNP 129118 129118 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C18%2C0:33 scaffold364 SAMTools SNP 130812 130812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C67%2C25%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 131661 131661 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.0009%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 133205 133205 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C90%2C0%2C54%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold364 SAMTools SNP 133273 133273 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 153060 153060 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 153081 153081 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 155077 155077 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold364 SAMTools SNP 155125 155125 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0089%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C35:38 scaffold364 SAMTools SNP 155842 155842 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 157052 157052 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D68.8%3BPV4%3D0.18%2C5.1e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C96:99 scaffold364 SAMTools SNP 157061 157061 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C30%2C0:57 scaffold364 SAMTools SNP 171441 171441 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold364 SAMTools SNP 227813 227813 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold364 SAMTools SNP 237124 237124 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 237141 237141 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 237779 237779 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 237979 237979 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C66%2C0:99 scaffold364 SAMTools SNP 238126 238126 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C69%2C0:99 scaffold364 SAMTools SNP 241944 241944 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C16:19 scaffold364 SAMTools SNP 242726 242726 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C5%2C6%2C13%3BMQ%3D45%3BFQ%3D51%3BPV4%3D1.9e-10%2C0.22%2C0.038%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold364 SAMTools SNP 242960 242960 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold364 SAMTools SNP 243477 243477 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C182:99 scaffold364 SAMTools SNP 267351 267351 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 268899 268899 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 269358 269358 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 269513 269513 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 269735 269735 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D48%3BFQ%3D-6.96%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C21:24 scaffold364 SAMTools SNP 269967 269967 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D0.52%2C0.0055%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold364 SAMTools SNP 270363 270363 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C9%2C0%3BMQ%3D45%3BFQ%3D140%3BPV4%3D0.011%2C1%2C0.065%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C208:99 scaffold364 SAMTools SNP 270758 270758 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C0%3BMQ%3D43%3BFQ%3D152%3BPV4%3D0.53%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C200:99 scaffold364 SAMTools SNP 271013 271013 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold364 SAMTools SNP 271051 271051 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C0%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold364 SAMTools SNP 271240 271240 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold364 SAMTools SNP 271258 271258 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C38:41 scaffold364 SAMTools SNP 272076 272076 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold364 SAMTools SNP 272153 272153 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 324530 324530 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 325181 325181 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 348190 348190 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 348216 348216 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 377107 377107 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C0%2C40%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C199:99 scaffold364 SAMTools SNP 377125 377125 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0058%2C0.32%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C36:39 scaffold364 SAMTools SNP 378075 378075 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C4%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D0.089%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold364 SAMTools SNP 379818 379818 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold364 SAMTools SNP 383938 383938 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 401144 401144 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold364 SAMTools SNP 401905 401905 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C24%2C0:45 scaffold364 SAMTools SNP 401918 401918 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C30%2C0:57 scaffold364 SAMTools SNP 402691 402691 76.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold364 SAMTools SNP 402776 402776 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold364 SAMTools SNP 429045 429045 193 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold364 SAMTools SNP 429091 429091 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold364 SAMTools SNP 429308 429308 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.017%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold364 SAMTools SNP 429351 429351 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C12%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold364 SAMTools SNP 431071 431071 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C48%2C11%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 434368 434368 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C5%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.75%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold364 SAMTools SNP 434378 434378 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C30%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold364 SAMTools SNP 434398 434398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C29%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold364 SAMTools SNP 437082 437082 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.46%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold364 SAMTools SNP 437133 437133 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold364 SAMTools SNP 441322 441322 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold364 SAMTools SNP 442468 442468 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold364 SAMTools SNP 442577 442577 85.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold364 SAMTools SNP 442600 442600 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C6.1e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C115:49 scaffold364 SAMTools SNP 452949 452949 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C1%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D0.27%2C0.087%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C253:43 scaffold364 SAMTools SNP 452985 452985 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C27%2C0:51 scaffold364 SAMTools SNP 453000 453000 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C36%2C0:69 scaffold364 SAMTools SNP 454192 454192 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 454548 454548 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold364 SAMTools SNP 454679 454679 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C30%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold364 SAMTools SNP 454982 454982 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 456675 456675 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C21%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C244:99 scaffold364 SAMTools SNP 458478 458478 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold364 SAMTools SNP 461042 461042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold364 SAMTools SNP 461583 461583 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 461589 461589 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 464911 464911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.18%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold364 SAMTools SNP 465852 465852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 466394 466394 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 466726 466726 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 466761 466761 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold364 SAMTools SNP 466911 466911 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold364 SAMTools SNP 466934 466934 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold364 SAMTools SNP 466943 466943 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold364 SAMTools SNP 467450 467450 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold364 SAMTools SNP 468053 468053 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C4%2C21%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C4.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold364 SAMTools SNP 468475 468475 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold364 SAMTools SNP 468547 468547 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold364 SAMTools SNP 468919 468919 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C145:99 scaffold364 SAMTools SNP 469033 469033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C32%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 469850 469850 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold364 SAMTools SNP 469859 469859 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 470379 470379 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold364 SAMTools SNP 470391 470391 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 470990 470990 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C152:99 scaffold364 SAMTools SNP 471336 471336 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold364 SAMTools SNP 471493 471493 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold364 SAMTools SNP 471815 471815 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.56%2C0.015%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold364 SAMTools SNP 471817 471817 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold364 SAMTools SNP 472424 472424 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.49%2C0.14%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold364 SAMTools SNP 472474 472474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold364 SAMTools SNP 473079 473079 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold364 SAMTools SNP 473283 473283 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold364 SAMTools SNP 473740 473740 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.15%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C190:99 scaffold364 SAMTools SNP 473779 473779 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 474101 474101 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 474123 474123 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 474230 474230 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C32%2C5%2C18%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.19%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold364 SAMTools SNP 474778 474778 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold364 SAMTools SNP 474812 474812 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C20%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.06%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C203:99 scaffold364 SAMTools SNP 474869 474869 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold364 SAMTools SNP 477702 477702 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold364 SAMTools SNP 478227 478227 8.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold364 SAMTools SNP 479106 479106 14.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold364 SAMTools SNP 479520 479520 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold364 SAMTools SNP 489072 489072 21.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold364 SAMTools SNP 489149 489149 33.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold364 SAMTools SNP 492627 492627 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 498699 498699 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 499036 499036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 499048 499048 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 499060 499060 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 499549 499549 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold364 SAMTools SNP 500485 500485 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold364 SAMTools SNP 500509 500509 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold364 SAMTools SNP 500626 500626 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 500969 500969 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 501202 501202 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C32:35 scaffold364 SAMTools SNP 501442 501442 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C224:99 scaffold364 SAMTools SNP 501977 501977 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C142:96 scaffold364 SAMTools SNP 502453 502453 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold364 SAMTools SNP 502687 502687 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold364 SAMTools SNP 502909 502909 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.001%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold364 SAMTools SNP 503157 503157 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.35%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold364 SAMTools SNP 504159 504159 13.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold364 SAMTools SNP 504273 504273 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.3%2C1.1e-06%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold364 SAMTools SNP 504606 504606 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 506673 506673 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.64%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold364 SAMTools SNP 506773 506773 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold364 SAMTools SNP 508007 508007 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 508360 508360 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 508628 508628 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold364 SAMTools SNP 508704 508704 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold364 SAMTools SNP 508866 508866 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C248:99 scaffold364 SAMTools SNP 508892 508892 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold364 SAMTools SNP 509277 509277 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C5%2C18%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold364 SAMTools SNP 509304 509304 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold364 SAMTools SNP 510004 510004 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold364 SAMTools SNP 513495 513495 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold364 SAMTools SNP 514973 514973 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold364 SAMTools SNP 515016 515016 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold364 SAMTools SNP 515443 515443 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.49%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C66:69 scaffold364 SAMTools SNP 517928 517928 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C5%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0018%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold364 SAMTools SNP 517970 517970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.052%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 521902 521902 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold364 SAMTools SNP 524631 524631 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 528374 528374 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.67%2C0.023%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold364 SAMTools SNP 530308 530308 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 530661 530661 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.035%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold364 SAMTools SNP 531552 531552 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 533512 533512 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold364 SAMTools SNP 534160 534160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold364 SAMTools SNP 534866 534866 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold364 SAMTools SNP 534875 534875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold364 SAMTools SNP 534882 534882 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C0.00082%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold364 SAMTools SNP 535771 535771 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 536326 536326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C29%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.23%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 539949 539949 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold364 SAMTools SNP 540528 540528 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 540534 540534 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 540555 540555 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 541268 541268 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D2.3e-05%2C0.084%2C1%2C3.6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold364 SAMTools SNP 541307 541307 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 541313 541313 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold364 SAMTools SNP 541638 541638 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C22%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C230:99 scaffold364 SAMTools SNP 541931 541931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold364 SAMTools SNP 541994 541994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 542021 542021 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 542027 542027 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 543261 543261 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 543680 543680 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold364 SAMTools SNP 543886 543886 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold364 SAMTools SNP 546948 546948 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold364 SAMTools SNP 546975 546975 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold364 SAMTools SNP 547214 547214 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold364 SAMTools SNP 547777 547777 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold364 SAMTools SNP 548483 548483 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold364 SAMTools SNP 549050 549050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold364 SAMTools SNP 549068 549068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold364 SAMTools SNP 550754 550754 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C33%3BMQ%3D50%3BFQ%3D-96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold364 SAMTools SNP 550856 550856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C13%3BMQ%3D49%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold364 SAMTools SNP 551242 551242 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C8%2C2%3BMQ%3D49%3BFQ%3D191%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold364 SAMTools SNP 551511 551511 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C12%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold364 SAMTools SNP 551725 551725 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 551737 551737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold364 SAMTools SNP 560107 560107 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold364 SAMTools SNP 560747 560747 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold364 SAMTools SNP 561468 561468 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.35%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold364 SAMTools SNP 561480 561480 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 561510 561510 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 561552 561552 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold364 SAMTools SNP 561640 561640 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 561847 561847 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold364 SAMTools SNP 562182 562182 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold364 SAMTools SNP 562671 562671 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 562710 562710 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 562827 562827 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 562839 562839 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 562965 562965 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 563972 563972 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D51.8%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C80:82 scaffold364 SAMTools SNP 564031 564031 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C74:31 scaffold364 SAMTools SNP 564270 564270 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 564625 564625 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 564629 564629 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 564891 564891 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold364 SAMTools SNP 565182 565182 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold364 SAMTools SNP 565206 565206 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 566096 566096 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 566116 566116 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold364 SAMTools SNP 566572 566572 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold364 SAMTools SNP 566842 566842 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 566851 566851 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold364 SAMTools SNP 566920 566920 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 567104 567104 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold364 SAMTools SNP 567143 567143 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 567304 567304 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 568473 568473 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 569473 569473 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold364 SAMTools SNP 569536 569536 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold364 SAMTools SNP 569991 569991 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.51%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold364 SAMTools SNP 569994 569994 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.49%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold364 SAMTools SNP 570286 570286 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold364 SAMTools SNP 570974 570974 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 571190 571190 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 571208 571208 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 571730 571730 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold364 SAMTools SNP 572204 572204 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold364 SAMTools SNP 572427 572427 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold364 SAMTools SNP 573368 573368 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 573710 573710 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 574888 574888 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold364 SAMTools SNP 575679 575679 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C21:24 scaffold364 SAMTools SNP 575736 575736 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold364 SAMTools SNP 576006 576006 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold364 SAMTools SNP 577150 577150 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold364 SAMTools SNP 577560 577560 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold364 SAMTools SNP 577650 577650 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold364 SAMTools SNP 578983 578983 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C0.00056%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C221:47 scaffold364 SAMTools SNP 579070 579070 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold364 SAMTools SNP 579465 579465 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold364 SAMTools SNP 579552 579552 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 579573 579573 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 579800 579800 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 580461 580461 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold364 SAMTools SNP 580483 580483 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold364 SAMTools SNP 581077 581077 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold364 SAMTools SNP 581105 581105 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold364 SAMTools SNP 581116 581116 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold364 SAMTools SNP 581185 581185 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 581496 581496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 582401 582401 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 582577 582577 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 584768 584768 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 585246 585246 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold364 SAMTools SNP 585247 585247 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold364 SAMTools SNP 585265 585265 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C12%2C0:21 scaffold364 SAMTools SNP 585873 585873 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold364 SAMTools SNP 586327 586327 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 587563 587563 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 587774 587774 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold364 SAMTools SNP 587937 587937 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold364 SAMTools SNP 588305 588305 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 588938 588938 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 588944 588944 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold364 SAMTools SNP 589326 589326 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.7e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold364 SAMTools SNP 590335 590335 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold364 SAMTools SNP 590660 590660 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold364 SAMTools SNP 590741 590741 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D33.9%3BPV4%3D0.1%2C0.024%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C77:64 scaffold364 SAMTools SNP 590969 590969 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold364 SAMTools SNP 591522 591522 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold364 SAMTools SNP 591549 591549 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold364 SAMTools SNP 594895 594895 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 594898 594898 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold364 SAMTools SNP 595462 595462 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 595505 595505 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 598399 598399 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 603644 603644 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 606585 606585 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 623507 623507 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.2%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold364 SAMTools SNP 623518 623518 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold364 SAMTools SNP 623664 623664 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold364 SAMTools SNP 627868 627868 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C29:32 scaffold364 SAMTools SNP 627917 627917 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold364 SAMTools SNP 629458 629458 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold364 SAMTools SNP 636244 636244 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold364 SAMTools SNP 636381 636381 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold364 SAMTools SNP 636867 636867 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold364 SAMTools SNP 636911 636911 34.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold364 SAMTools SNP 637413 637413 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold364 SAMTools SNP 637438 637438 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold364 SAMTools SNP 637968 637968 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold364 SAMTools SNP 637977 637977 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C233:99 scaffold364 SAMTools SNP 637995 637995 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold364 SAMTools SNP 639014 639014 46.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold364 SAMTools SNP 649425 649425 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 649432 649432 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold364 SAMTools SNP 649662 649662 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold364 SAMTools SNP 649742 649742 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold364 SAMTools SNP 650737 650737 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C45%3BMQ%3D50%3BFQ%3D-144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold364 SAMTools SNP 652299 652299 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold364 SAMTools SNP 653219 653219 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold364 SAMTools SNP 658978 658978 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold364 SAMTools SNP 658983 658983 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold364 SAMTools SNP 660969 660969 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold364 SAMTools SNP 662930 662930 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C186:99 scaffold364 SAMTools SNP 663231 663231 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold364 SAMTools SNP 714693 714693 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold365 SAMTools SNP 24035 24035 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 24086 24086 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 24223 24223 48.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold365 SAMTools SNP 25894 25894 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold365 SAMTools SNP 26598 26598 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C112:65 scaffold365 SAMTools SNP 27382 27382 79.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C12%2C0:21 scaffold365 SAMTools SNP 29472 29472 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold365 SAMTools SNP 29500 29500 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold365 SAMTools SNP 29527 29527 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold365 SAMTools SNP 31183 31183 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold365 SAMTools SNP 31737 31737 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold365 SAMTools SNP 33534 33534 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold365 SAMTools SNP 33905 33905 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold365 SAMTools SNP 34303 34303 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D45%3BFQ%3D100%3BPV4%3D1%2C0.48%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C127:99 scaffold365 SAMTools SNP 44217 44217 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold365 SAMTools SNP 44356 44356 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold365 SAMTools SNP 45899 45899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold365 SAMTools SNP 46087 46087 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold365 SAMTools SNP 46246 46246 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold365 SAMTools SNP 46622 46622 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold365 SAMTools SNP 46655 46655 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 47284 47284 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 52571 52571 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 53178 53178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 54835 54835 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold365 SAMTools SNP 55323 55323 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold365 SAMTools SNP 55401 55401 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 55949 55949 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 55969 55969 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 56252 56252 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold365 SAMTools SNP 56354 56354 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold365 SAMTools SNP 57302 57302 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.8e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C231:47 scaffold365 SAMTools SNP 57477 57477 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C172:52 scaffold365 SAMTools SNP 58639 58639 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold365 SAMTools SNP 63969 63969 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 68605 68605 82.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold365 SAMTools SNP 88797 88797 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 89018 89018 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0034%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold365 SAMTools SNP 89896 89896 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold365 SAMTools SNP 92316 92316 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.01%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold365 SAMTools SNP 92373 92373 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold365 SAMTools SNP 92413 92413 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold365 SAMTools SNP 94062 94062 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D45%3BFQ%3D18.1%3BPV4%3D1%2C0.34%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C218:48 scaffold365 SAMTools SNP 94094 94094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D47%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold365 SAMTools SNP 97565 97565 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold365 SAMTools SNP 97625 97625 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.16%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C234:89 scaffold365 SAMTools SNP 98174 98174 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.35%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold365 SAMTools SNP 98201 98201 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold365 SAMTools SNP 98293 98293 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold365 SAMTools SNP 98343 98343 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.049%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold365 SAMTools SNP 98758 98758 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C49:52 scaffold365 SAMTools SNP 98793 98793 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.089%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C104:99 scaffold365 SAMTools SNP 99379 99379 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C6.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C4%2C0:7 scaffold365 SAMTools SNP 99438 99438 17.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold365 SAMTools SNP 99445 99445 43.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold365 SAMTools SNP 99591 99591 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold365 SAMTools SNP 99604 99604 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold365 SAMTools SNP 99607 99607 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold365 SAMTools SNP 99751 99751 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold365 SAMTools SNP 100237 100237 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold365 SAMTools SNP 100288 100288 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.089%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold365 SAMTools SNP 100330 100330 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold365 SAMTools SNP 101783 101783 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold365 SAMTools SNP 102029 102029 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold365 SAMTools SNP 102069 102069 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold365 SAMTools SNP 109115 109115 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C0.13%2C0.26%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C157:34 scaffold365 SAMTools SNP 110188 110188 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D44%3BFQ%3D43%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C182:73 scaffold365 SAMTools SNP 110206 110206 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D46%3BFQ%3D81%3BPV4%3D1%2C0.21%2C0.28%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold365 SAMTools SNP 110597 110597 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold365 SAMTools SNP 110627 110627 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold365 SAMTools SNP 110642 110642 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold365 SAMTools SNP 123234 123234 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold365 SAMTools SNP 130932 130932 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C253:66 scaffold365 SAMTools SNP 131649 131649 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.13%2C1.8e-06%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold365 SAMTools SNP 131859 131859 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold365 SAMTools SNP 132133 132133 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold365 SAMTools SNP 132142 132142 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold365 SAMTools SNP 134568 134568 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 135040 135040 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold365 SAMTools SNP 139272 139272 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 139833 139833 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold365 SAMTools SNP 139866 139866 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 142979 142979 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 143029 143029 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C3%2C0:6 scaffold365 SAMTools SNP 149596 149596 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0023%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold365 SAMTools SNP 150836 150836 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D41.4%3BPV4%3D0.1%2C1.3e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C77:71 scaffold365 SAMTools SNP 150877 150877 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold365 SAMTools SNP 157187 157187 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold365 SAMTools SNP 158291 158291 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold365 SAMTools SNP 160004 160004 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold365 SAMTools SNP 160673 160673 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 164059 164059 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 176319 176319 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.8e-11%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C172:52 scaffold365 SAMTools SNP 177550 177550 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 177551 177551 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold365 SAMTools SNP 184817 184817 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 195210 195210 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold365 SAMTools SNP 195532 195532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold365 SAMTools SNP 195538 195538 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold365 SAMTools SNP 199803 199803 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C27%2C0:51 scaffold365 SAMTools SNP 199812 199812 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C40:43 scaffold365 SAMTools SNP 199851 199851 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold365 SAMTools SNP 199872 199872 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold365 SAMTools SNP 201152 201152 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold365 SAMTools SNP 201200 201200 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold365 SAMTools SNP 201239 201239 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-4.77%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C24:27 scaffold365 SAMTools SNP 201247 201247 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C8.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C37%2C0:71 scaffold365 SAMTools SNP 201651 201651 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C19%2C125%3BMQ%3D50%3BFQ%3D215%3BPV4%3D3.8e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold365 SAMTools SNP 202112 202112 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C18%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D9.7e-13%2C3.3e-16%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C250:99 scaffold365 SAMTools SNP 202147 202147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 203326 203326 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C11%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C240:99 scaffold365 SAMTools SNP 208562 208562 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold365 SAMTools SNP 209096 209096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold365 SAMTools SNP 209114 209114 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 209550 209550 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold365 SAMTools SNP 209628 209628 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 214704 214704 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold365 SAMTools SNP 228095 228095 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C41:44 scaffold365 SAMTools SNP 265165 265165 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 265418 265418 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 284525 284525 3.55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold365 SAMTools SNP 287555 287555 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold365 SAMTools SNP 292409 292409 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 294622 294622 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold365 SAMTools SNP 297091 297091 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 297109 297109 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 302113 302113 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D653%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D286%2C159%2C118%2C82%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.22%2C3e-282%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold365 SAMTools SNP 302309 302309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold365 SAMTools SNP 302316 302316 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C20%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.025%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold365 SAMTools SNP 302488 302488 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold365 SAMTools SNP 302555 302555 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C6.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C246:58 scaffold365 SAMTools SNP 313185 313185 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C27%2C0:51 scaffold365 SAMTools SNP 314259 314259 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.46%2C1%2C3.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold365 SAMTools SNP 314292 314292 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold365 SAMTools SNP 314315 314315 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold365 SAMTools SNP 315013 315013 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 315022 315022 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 315028 315028 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 315668 315668 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold365 SAMTools SNP 315687 315687 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.28%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold365 SAMTools SNP 316738 316738 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold365 SAMTools SNP 332017 332017 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2898%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C1%2C31%2C3%3BMQ%3D49%3BFQ%3D4.13%3BPV4%3D0.37%2C4.2e-18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C29:32 scaffold365 SAMTools SNP 332284 332284 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5276%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C36%2C61%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D0.093%2C1.8e-18%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C60%2C0:99 scaffold365 SAMTools SNP 332419 332419 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3930%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1759%2C595%2C923%2C564%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1.6e-16%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold365 SAMTools SNP 333573 333573 23.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold365 SAMTools SNP 333590 333590 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold365 SAMTools SNP 349778 349778 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1921%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold365 SAMTools SNP 350626 350626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3633%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C81%2C144%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.3%2C0.41%2C0.43%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 350764 350764 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2310%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C17%3BMQ%3D43%3BFQ%3D72%3BPV4%3D0.16%2C3.3e-06%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C133:99 scaffold365 SAMTools SNP 350815 350815 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2375%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D3.14%3BPV4%3D1%2C0.021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C29:30 scaffold365 SAMTools SNP 351589 351589 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7174%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3064%2C534%2C2989%2C320%3BMQ%3D15%3BFQ%3D51%3BPV4%3D6.5e-11%2C1%2C7.2e-11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C215:81 scaffold365 SAMTools SNP 360665 360665 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold365 SAMTools SNP 383125 383125 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold365 SAMTools SNP 400109 400109 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.027%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold365 SAMTools SNP 400434 400434 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold365 SAMTools SNP 400458 400458 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold365 SAMTools SNP 400481 400481 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold365 SAMTools SNP 400483 400483 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C84:43 scaffold365 SAMTools SNP 400600 400600 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C38:41 scaffold365 SAMTools SNP 414871 414871 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold365 SAMTools SNP 431319 431319 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold365 SAMTools SNP 431355 431355 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold365 SAMTools SNP 432976 432976 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 432979 432979 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 434378 434378 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold365 SAMTools SNP 434592 434592 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C39%2C0:75 scaffold365 SAMTools SNP 435619 435619 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 435636 435636 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold365 SAMTools SNP 436059 436059 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C22%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C6.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C178:46 scaffold365 SAMTools SNP 436257 436257 149 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C84%2C0%2C181%2C68%2C178:99 scaffold365 SAMTools SNP 436314 436314 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold365 SAMTools SNP 436549 436549 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 438742 438742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 438832 438832 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 439162 439162 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C20%2C8%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.2%2C7.7e-57%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold365 SAMTools SNP 439812 439812 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C18%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold365 SAMTools SNP 445775 445775 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold365 SAMTools SNP 446528 446528 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold365 SAMTools SNP 446825 446825 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 446833 446833 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold365 SAMTools SNP 449793 449793 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 449812 449812 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold365 SAMTools SNP 454343 454343 34.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold365 SAMTools SNP 460948 460948 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.071%2C3.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold365 SAMTools SNP 461072 461072 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C9.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold365 SAMTools SNP 461646 461646 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C17%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 461683 461683 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C12%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C0.26%2C0.13%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 461688 461688 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold365 SAMTools SNP 465811 465811 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C13%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold365 SAMTools SNP 465835 465835 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold365 SAMTools SNP 467012 467012 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 467028 467028 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 467107 467107 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 467467 467467 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C60%2C0:99 scaffold365 SAMTools SNP 467490 467490 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold365 SAMTools SNP 467539 467539 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold365 SAMTools SNP 471602 471602 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C18%2C16%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold365 SAMTools SNP 472707 472707 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold365 SAMTools SNP 474103 474103 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.31%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C128:99 scaffold365 SAMTools SNP 474529 474529 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C44%2C36%2C35%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.75%2C2.2e-91%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold365 SAMTools SNP 474550 474550 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C47%2C38%2C40%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.14%2C1e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold365 SAMTools SNP 474753 474753 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C15%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0038%2C1.6e-18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold365 SAMTools SNP 475639 475639 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C30%2C68%2C26%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.64%2C1.9e-131%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold365 SAMTools SNP 476513 476513 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C30%2C0:57 scaffold365 SAMTools SNP 476662 476662 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C1%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C4.6e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 476907 476907 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold365 SAMTools SNP 477120 477120 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold365 SAMTools SNP 477280 477280 25.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold365 SAMTools SNP 477759 477759 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.033%2C1%2C1%2C5.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold365 SAMTools SNP 477812 477812 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C8%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold365 SAMTools SNP 477832 477832 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C14%2C63%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 478893 478893 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C11%2C42%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.11%2C1%2C0.4%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 478914 478914 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C14%2C37%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 480974 480974 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C215:44 scaffold365 SAMTools SNP 483690 483690 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold365 SAMTools SNP 483743 483743 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold365 SAMTools SNP 483795 483795 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C22%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold365 SAMTools SNP 484065 484065 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold365 SAMTools SNP 486558 486558 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold365 SAMTools SNP 486621 486621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold365 SAMTools SNP 488038 488038 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold365 SAMTools SNP 489302 489302 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold365 SAMTools SNP 489314 489314 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 489370 489370 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold365 SAMTools SNP 492400 492400 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 495459 495459 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold365 SAMTools SNP 495492 495492 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 495531 495531 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold365 SAMTools SNP 495536 495536 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold365 SAMTools SNP 499891 499891 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 499895 499895 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 504488 504488 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.061%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C188:86 scaffold365 SAMTools SNP 504701 504701 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold365 SAMTools SNP 507462 507462 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 508607 508607 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 513620 513620 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C10%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold365 SAMTools SNP 513642 513642 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold365 SAMTools SNP 513647 513647 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold365 SAMTools SNP 513649 513649 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold365 SAMTools SNP 514159 514159 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold365 SAMTools SNP 514263 514263 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold365 SAMTools SNP 514274 514274 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold365 SAMTools SNP 516452 516452 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 516470 516470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 516548 516548 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 517355 517355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 517380 517380 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 517828 517828 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 518275 518275 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold365 SAMTools SNP 518296 518296 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold365 SAMTools SNP 518339 518339 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 518763 518763 173 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold365 SAMTools SNP 519525 519525 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold365 SAMTools SNP 519626 519626 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 522053 522053 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold365 SAMTools SNP 524287 524287 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C51%2C0:99 scaffold365 SAMTools SNP 524473 524473 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C13%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold365 SAMTools SNP 524641 524641 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 524728 524728 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C176:99 scaffold365 SAMTools SNP 524740 524740 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold365 SAMTools SNP 524907 524907 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C33%2C0:63 scaffold365 SAMTools SNP 525795 525795 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0075%2C3.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold365 SAMTools SNP 526139 526139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold365 SAMTools SNP 526184 526184 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold365 SAMTools SNP 526697 526697 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 527128 527128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold365 SAMTools SNP 527155 527155 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold365 SAMTools SNP 527191 527191 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.0066%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C178:96 scaffold365 SAMTools SNP 527198 527198 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.47%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C170:80 scaffold365 SAMTools SNP 533701 533701 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C4.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C196:39 scaffold365 SAMTools SNP 534049 534049 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold365 SAMTools SNP 534127 534127 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C30%2C0:57 scaffold365 SAMTools SNP 534712 534712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold365 SAMTools SNP 534771 534771 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.24%2C1%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold365 SAMTools SNP 541956 541956 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C21%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 542016 542016 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 542355 542355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold365 SAMTools SNP 552653 552653 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C212:99 scaffold365 SAMTools SNP 552682 552682 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold365 SAMTools SNP 553072 553072 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold365 SAMTools SNP 557924 557924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold365 SAMTools SNP 571991 571991 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C42%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold365 SAMTools SNP 572288 572288 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C12%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C6.5e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 572402 572402 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold365 SAMTools SNP 572429 572429 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C69%2C51%2C63%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.45%2C7.6e-185%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold365 SAMTools SNP 572843 572843 28.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold365 SAMTools SNP 573017 573017 45.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold365 SAMTools SNP 573639 573639 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold365 SAMTools SNP 574174 574174 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold365 SAMTools SNP 574196 574196 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold365 SAMTools SNP 574204 574204 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.016%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold365 SAMTools SNP 574217 574217 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold365 SAMTools SNP 574595 574595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold365 SAMTools SNP 574676 574676 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 574683 574683 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold365 SAMTools SNP 574704 574704 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold365 SAMTools SNP 575432 575432 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 575477 575477 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.6e-06%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C107:51 scaffold365 SAMTools SNP 575540 575540 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold365 SAMTools SNP 575588 575588 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold365 SAMTools SNP 576294 576294 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold365 SAMTools SNP 576317 576317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold365 SAMTools SNP 584236 584236 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.19%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C250:99 scaffold365 SAMTools SNP 619739 619739 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 620294 620294 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold365 SAMTools SNP 620356 620356 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold365 SAMTools SNP 620415 620415 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 628647 628647 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00017%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C219:58 scaffold365 SAMTools SNP 628743 628743 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold365 SAMTools SNP 628947 628947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold365 SAMTools SNP 644365 644365 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold365 SAMTools SNP 644366 644366 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold365 SAMTools SNP 644367 644367 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold365 SAMTools SNP 644418 644418 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold365 SAMTools SNP 644445 644445 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold365 SAMTools SNP 644885 644885 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 644894 644894 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 645042 645042 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C15%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1.8e-05%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold365 SAMTools SNP 645104 645104 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C21%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold365 SAMTools SNP 647121 647121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C18%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.55%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold365 SAMTools SNP 647136 647136 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold365 SAMTools SNP 647138 647138 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold365 SAMTools SNP 647162 647162 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold365 SAMTools SNP 647520 647520 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold365 SAMTools SNP 647533 647533 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold365 SAMTools SNP 647595 647595 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C39%2C0:75 scaffold365 SAMTools SNP 648593 648593 12 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold365 SAMTools SNP 648779 648779 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C24%2C0:45 scaffold365 SAMTools SNP 648854 648854 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C39%2C0:75 scaffold365 SAMTools SNP 661390 661390 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold365 SAMTools SNP 664236 664236 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 664908 664908 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold365 SAMTools SNP 665222 665222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 665229 665229 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold365 SAMTools SNP 665264 665264 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold365 SAMTools SNP 665313 665313 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D46.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C85:77 scaffold365 SAMTools SNP 666029 666029 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold365 SAMTools SNP 666032 666032 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C223:99 scaffold365 SAMTools SNP 666413 666413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold365 SAMTools SNP 666434 666434 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.2%2C0.25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold365 SAMTools SNP 666707 666707 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold365 SAMTools SNP 667174 667174 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.26%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 667189 667189 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 667602 667602 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.21%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 667632 667632 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold365 SAMTools SNP 667894 667894 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 667943 667943 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold365 SAMTools SNP 669775 669775 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold365 SAMTools SNP 673275 673275 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 673312 673312 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 673469 673469 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 674432 674432 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 683644 683644 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold365 SAMTools SNP 713412 713412 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C5.4e-09%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C180:36 scaffold365 SAMTools SNP 713475 713475 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold365 SAMTools SNP 714537 714537 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 714564 714564 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 715425 715425 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold365 SAMTools SNP 715822 715822 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold365 SAMTools SNP 716156 716156 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 716607 716607 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 716658 716658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 716727 716727 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold365 SAMTools SNP 717113 717113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 717671 717671 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 717700 717700 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 717701 717701 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold365 SAMTools SNP 718415 718415 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C175:99 scaffold365 SAMTools SNP 718607 718607 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold365 SAMTools SNP 718826 718826 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C103:80 scaffold365 SAMTools SNP 719687 719687 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.23%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold365 SAMTools SNP 719827 719827 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold365 SAMTools SNP 721443 721443 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold365 SAMTools SNP 721623 721623 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C55%2C20%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.056%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 722028 722028 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C43%2C17%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-05%2C0.24%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 722362 722362 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold365 SAMTools SNP 723247 723247 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C8%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold365 SAMTools SNP 723457 723457 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C6%2C55%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 723470 723470 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C7%2C56%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 724278 724278 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 724439 724439 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C38%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 724447 724447 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C4%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 724487 724487 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C226:99 scaffold365 SAMTools SNP 724527 724527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 724965 724965 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C59%2C39%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 725671 725671 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold365 SAMTools SNP 725697 725697 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C5%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.015%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold365 SAMTools SNP 725744 725744 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C3%2C26%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold365 SAMTools SNP 725768 725768 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C0%2C16%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0016%2C1.2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold365 SAMTools SNP 725798 725798 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C18%2C26%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.056%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold365 SAMTools SNP 725816 725816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 726182 726182 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 726185 726185 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 726369 726369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold365 SAMTools SNP 726373 726373 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold365 SAMTools SNP 726887 726887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold365 SAMTools SNP 727210 727210 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold365 SAMTools SNP 727941 727941 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold365 SAMTools SNP 728357 728357 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold365 SAMTools SNP 729105 729105 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 729156 729156 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold365 SAMTools SNP 729162 729162 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold365 SAMTools SNP 730606 730606 64.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold365 SAMTools SNP 733174 733174 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C37%2C29%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1.5e-05%2C1%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold365 SAMTools SNP 733228 733228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C37%2C187%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 736151 736151 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C87%2C0%2C177%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 736179 736179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C46%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold365 SAMTools SNP 737667 737667 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold365 SAMTools SNP 740108 740108 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold365 SAMTools SNP 743325 743325 65 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C14%2C5%2C94%2C0%2C91:16 scaffold365 SAMTools SNP 744071 744071 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 751246 751246 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C56%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.41%2C1.5e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C201:70 scaffold365 SAMTools SNP 751255 751255 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.046%2C4.9e-29%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold365 SAMTools SNP 751949 751949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 751967 751967 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C74%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold365 SAMTools SNP 759185 759185 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold365 SAMTools SNP 759224 759224 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold365 SAMTools SNP 759230 759230 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold365 SAMTools SNP 760326 760326 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold365 SAMTools SNP 760332 760332 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold365 SAMTools SNP 760723 760723 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold365 SAMTools SNP 761000 761000 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 761307 761307 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 761337 761337 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold365 SAMTools SNP 762471 762471 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C242:31 scaffold365 SAMTools SNP 763001 763001 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold365 SAMTools SNP 763447 763447 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.56%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C216:99 scaffold365 SAMTools SNP 764414 764414 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.35%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold365 SAMTools SNP 764428 764428 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.05%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold365 SAMTools SNP 765029 765029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold365 SAMTools SNP 765082 765082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold365 SAMTools SNP 765113 765113 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0096%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold365 SAMTools SNP 765994 765994 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.41%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold365 SAMTools SNP 766228 766228 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C175:99 scaffold365 SAMTools SNP 766240 766240 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C170:99 scaffold365 SAMTools SNP 767001 767001 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.49%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C152:99 scaffold365 SAMTools SNP 767342 767342 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C234:99 scaffold365 SAMTools SNP 767464 767464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold365 SAMTools SNP 767578 767578 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold365 SAMTools SNP 767996 767996 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold365 SAMTools SNP 774879 774879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 777839 777839 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C232%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold365 SAMTools SNP 778462 778462 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C157%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold365 SAMTools SNP 778522 778522 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C21%2C101%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold365 SAMTools SNP 779241 779241 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold365 SAMTools SNP 781710 781710 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C0%2C21%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0055%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold365 SAMTools SNP 782577 782577 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.4e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold366 SAMTools SNP 2552 2552 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold366 SAMTools SNP 2574 2574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold366 SAMTools SNP 2613 2613 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold366 SAMTools SNP 2633 2633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold366 SAMTools SNP 3434 3434 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold366 SAMTools SNP 3960 3960 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 6043 6043 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C2%2C53%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 8617 8617 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.0054%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 11109 11109 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C57%2C6%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 11750 11750 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C29%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold366 SAMTools SNP 11774 11774 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 12356 12356 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 12800 12800 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 12823 12823 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C4%2C6%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.053%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold366 SAMTools SNP 12859 12859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold366 SAMTools SNP 12898 12898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 13277 13277 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold366 SAMTools SNP 13286 13286 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold366 SAMTools SNP 14466 14466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C16%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold366 SAMTools SNP 14481 14481 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C22%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 14514 14514 116 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold366 SAMTools SNP 14571 14571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C39%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold366 SAMTools SNP 14592 14592 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C20%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.31%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C252:99 scaffold366 SAMTools SNP 14948 14948 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 15693 15693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold366 SAMTools SNP 15714 15714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold366 SAMTools SNP 16269 16269 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C212:99 scaffold366 SAMTools SNP 16329 16329 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94.8%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C122:99 scaffold366 SAMTools SNP 16338 16338 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold366 SAMTools SNP 16824 16824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold366 SAMTools SNP 16833 16833 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C75%2C0:99 scaffold366 SAMTools SNP 16878 16878 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.32%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold366 SAMTools SNP 16944 16944 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C65%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold366 SAMTools SNP 17273 17273 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C0.3%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold366 SAMTools SNP 17274 17274 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C212:99 scaffold366 SAMTools SNP 17295 17295 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold366 SAMTools SNP 17301 17301 84.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold366 SAMTools SNP 17311 17311 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C146:99 scaffold366 SAMTools SNP 17334 17334 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold366 SAMTools SNP 17355 17355 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.63%2C0.18%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold366 SAMTools SNP 18161 18161 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.078%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold366 SAMTools SNP 18164 18164 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold366 SAMTools SNP 18191 18191 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.59%2C0.065%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C188:99 scaffold366 SAMTools SNP 18718 18718 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 18862 18862 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold366 SAMTools SNP 18865 18865 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 18892 18892 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.62%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold366 SAMTools SNP 19071 19071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 19089 19089 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.66%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold366 SAMTools SNP 19178 19178 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 19430 19430 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C14%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D6.5e-09%2C2.7e-09%2C1%2C4e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold366 SAMTools SNP 19433 19433 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C6%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0041%2C5.7e-06%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold366 SAMTools SNP 19484 19484 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold366 SAMTools SNP 19857 19857 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C27%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold366 SAMTools SNP 19902 19902 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold366 SAMTools SNP 19962 19962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold366 SAMTools SNP 19988 19988 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C0%2C20%3BMQ%3D50%3BFQ%3D114%3BPV4%3D5.5e-07%2C5.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold366 SAMTools SNP 20387 20387 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold366 SAMTools SNP 20390 20390 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold366 SAMTools SNP 21545 21545 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold366 SAMTools SNP 22443 22443 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C10%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold366 SAMTools SNP 22896 22896 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 24923 24923 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 24959 24959 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.7%2C0.084%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold366 SAMTools SNP 24965 24965 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 25560 25560 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D93%3BPV4%3D4.3e-05%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold366 SAMTools SNP 25590 25590 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C31%2C7%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.25%2C4.6e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C251:99 scaffold366 SAMTools SNP 25614 25614 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C26%2C0:49 scaffold366 SAMTools SNP 25872 25872 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C26%2C17%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.092%2C1.4e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold366 SAMTools SNP 30849 30849 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 37695 37695 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold366 SAMTools SNP 37713 37713 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold366 SAMTools SNP 41828 41828 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D32%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C60%2C0:99 scaffold366 SAMTools SNP 42399 42399 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold366 SAMTools SNP 42434 42434 25.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D17%3BFQ%3D-45%3BPV4%3D1%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold366 SAMTools SNP 48325 48325 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D15%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C69%2C0:99 scaffold366 SAMTools SNP 48346 48346 59.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold366 SAMTools SNP 48894 48894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold366 SAMTools SNP 49805 49805 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1.8e-07%2C2.7e-15%2C1%2C9.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold366 SAMTools SNP 49806 49806 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C33%3BMQ%3D50%3BFQ%3D155%3BPV4%3D3.9e-10%2C1.4e-14%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold366 SAMTools SNP 50553 50553 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 51207 51207 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C45%2C0:87 scaffold366 SAMTools SNP 51285 51285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold366 SAMTools SNP 53489 53489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold366 SAMTools SNP 53543 53543 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.039%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold366 SAMTools SNP 53600 53600 18 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold366 SAMTools SNP 53740 53740 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C5%2C12%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.26%2C5.6e-19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold366 SAMTools SNP 54161 54161 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold366 SAMTools SNP 54183 54183 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold366 SAMTools SNP 54188 54188 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C45%2C0:87 scaffold366 SAMTools SNP 56524 56524 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold366 SAMTools SNP 57109 57109 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 59204 59204 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C9%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C0.00028%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold366 SAMTools SNP 82493 82493 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold366 SAMTools SNP 82523 82523 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold366 SAMTools SNP 84534 84534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C90%2C4%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 84573 84573 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C92%2C1%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 84588 84588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold366 SAMTools SNP 85310 85310 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C13%2C35%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C2.6e-07%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 86260 86260 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C191%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold366 SAMTools SNP 86657 86657 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C18%2C18%2C12%3BMQ%3D42%3BFQ%3D139%3BPV4%3D0.15%2C0.18%2C0.044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold366 SAMTools SNP 86948 86948 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C59%2C20%2C50%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 86983 86983 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C69%2C11%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 87017 87017 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C50%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold366 SAMTools SNP 87723 87723 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C15%2C0%3BMQ%3D49%3BFQ%3D46%3BPV4%3D0.28%2C1.9e-05%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold366 SAMTools SNP 87736 87736 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D0.048%2C0.00045%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C135:28 scaffold366 SAMTools SNP 88079 88079 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C86%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.19%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C144:99 scaffold366 SAMTools SNP 88104 88104 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.36%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C208:95 scaffold366 SAMTools SNP 95211 95211 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 95372 95372 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold366 SAMTools SNP 95396 95396 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold366 SAMTools SNP 95672 95672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 100115 100115 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 100155 100155 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold366 SAMTools SNP 100233 100233 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D42%3BFQ%3D17.1%3BPV4%3D0.43%2C9.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C77:47 scaffold366 SAMTools SNP 100353 100353 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.63%2C7.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold366 SAMTools SNP 113153 113153 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.8e-12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C186:36 scaffold366 SAMTools SNP 120855 120855 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold366 SAMTools SNP 121318 121318 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold366 SAMTools SNP 121380 121380 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold366 SAMTools SNP 122958 122958 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold366 SAMTools SNP 123013 123013 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold366 SAMTools SNP 129893 129893 32.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold366 SAMTools SNP 130600 130600 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold368 SAMTools SNP 24021 24021 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold368 SAMTools SNP 31301 31301 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold368 SAMTools SNP 50334 50334 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold368 SAMTools SNP 50541 50541 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold368 SAMTools SNP 50625 50625 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C26%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 50632 50632 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 50649 50649 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C25%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 50988 50988 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.0034%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 50991 50991 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold368 SAMTools SNP 51081 51081 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C30%2C9%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C9.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold368 SAMTools SNP 51594 51594 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold368 SAMTools SNP 51642 51642 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold368 SAMTools SNP 51692 51692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold368 SAMTools SNP 51907 51907 166 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C42%2C0%2C192%2C24%2C189:81 scaffold368 SAMTools SNP 51966 51966 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold368 SAMTools SNP 52167 52167 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold368 SAMTools SNP 52271 52271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C14%2C47%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00021%2C0.19%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold368 SAMTools SNP 52739 52739 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold368 SAMTools SNP 53085 53085 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.4%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold368 SAMTools SNP 53129 53129 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold368 SAMTools SNP 53481 53481 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold368 SAMTools SNP 54015 54015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold368 SAMTools SNP 55340 55340 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold368 SAMTools SNP 55500 55500 82.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold368 SAMTools SNP 55626 55626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold368 SAMTools SNP 55724 55724 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C25%2C9%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C7.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold368 SAMTools SNP 55773 55773 216 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C255%2C0%2C247%2C255%2C244:99 scaffold368 SAMTools SNP 56820 56820 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C108%2C0:99 scaffold368 SAMTools SNP 57362 57362 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold368 SAMTools SNP 57495 57495 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold368 SAMTools SNP 58375 58375 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C14%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold368 SAMTools SNP 58420 58420 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C120%2C0:99 scaffold368 SAMTools SNP 62595 62595 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 64679 64679 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold368 SAMTools SNP 67678 67678 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold368 SAMTools SNP 68866 68866 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.47%2C0.00022%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C231:75 scaffold368 SAMTools SNP 71780 71780 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold368 SAMTools SNP 72141 72141 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold368 SAMTools SNP 72158 72158 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold368 SAMTools SNP 72174 72174 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold368 SAMTools SNP 74096 74096 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold368 SAMTools SNP 79135 79135 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0330%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold368 SAMTools SNP 80242 80242 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold368 SAMTools SNP 80414 80414 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold368 SAMTools SNP 92311 92311 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 102496 102496 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold368 SAMTools SNP 106500 106500 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold368 SAMTools SNP 107250 107250 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C78%2C0:99 scaffold368 SAMTools SNP 107560 107560 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 107815 107815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 110006 110006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold368 SAMTools SNP 110009 110009 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold368 SAMTools SNP 110542 110542 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C35:38 scaffold368 SAMTools SNP 110695 110695 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C26%2C20%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.037%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold368 SAMTools SNP 110933 110933 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C6%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold368 SAMTools SNP 110938 110938 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00067%2C3.5e-09%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold368 SAMTools SNP 111559 111559 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold368 SAMTools SNP 113708 113708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C52%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold368 SAMTools SNP 114551 114551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.071%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold368 SAMTools SNP 116084 116084 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 121876 121876 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 124174 124174 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold368 SAMTools SNP 124408 124408 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold368 SAMTools SNP 131262 131262 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 134932 134932 57.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold368 SAMTools SNP 151503 151503 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold368 SAMTools SNP 153567 153567 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold368 SAMTools SNP 157507 157507 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 157759 157759 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold368 SAMTools SNP 157963 157963 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold368 SAMTools SNP 183013 183013 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C219:33 scaffold368 SAMTools SNP 183193 183193 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold368 SAMTools SNP 201675 201675 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold368 SAMTools SNP 201699 201699 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold368 SAMTools SNP 202164 202164 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold368 SAMTools SNP 202206 202206 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.25%2C0.0044%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold368 SAMTools SNP 202264 202264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold368 SAMTools SNP 202569 202569 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.34%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold368 SAMTools SNP 203490 203490 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 203920 203920 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold368 SAMTools SNP 204155 204155 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 212147 212147 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C152%2C2%2C74%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold368 SAMTools SNP 213320 213320 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C39%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C6:9 scaffold368 SAMTools SNP 213480 213480 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C96%2C0:99 scaffold368 SAMTools SNP 213569 213569 24.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C15:18 scaffold368 SAMTools SNP 215007 215007 94.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C18%2C0:33 scaffold368 SAMTools SNP 215475 215475 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C5.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C223:48 scaffold368 SAMTools SNP 218196 218196 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold368 SAMTools SNP 218406 218406 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold368 SAMTools SNP 218582 218582 63.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold368 SAMTools SNP 218675 218675 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold368 SAMTools SNP 225533 225533 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold368 SAMTools SNP 225566 225566 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold368 SAMTools SNP 225578 225578 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold368 SAMTools SNP 226405 226405 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold368 SAMTools SNP 226576 226576 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 226621 226621 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 226989 226989 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold368 SAMTools SNP 242795 242795 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C43%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C160%2C0:99 scaffold368 SAMTools SNP 243644 243644 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 244070 244070 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold368 SAMTools SNP 244960 244960 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.28%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold368 SAMTools SNP 245157 245157 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold368 SAMTools SNP 259563 259563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 261337 261337 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 289862 289862 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.11%2C7.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C208:48 scaffold368 SAMTools SNP 298627 298627 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C42%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold368 SAMTools SNP 298648 298648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold368 SAMTools SNP 298684 298684 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D38%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold368 SAMTools SNP 299169 299169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C45%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 299214 299214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C46%3BMQ%3D38%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold368 SAMTools SNP 299669 299669 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold368 SAMTools SNP 303795 303795 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold368 SAMTools SNP 303828 303828 48.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold368 SAMTools SNP 313903 313903 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold368 SAMTools SNP 315967 315967 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C21%2C0:39 scaffold368 SAMTools SNP 316008 316008 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold368 SAMTools SNP 316048 316048 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold368 SAMTools SNP 316090 316090 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold368 SAMTools SNP 316466 316466 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold368 SAMTools SNP 319938 319938 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold368 SAMTools SNP 323443 323443 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 323508 323508 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.072%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold368 SAMTools SNP 323851 323851 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C20%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C208:99 scaffold368 SAMTools SNP 323927 323927 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold368 SAMTools SNP 346649 346649 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold368 SAMTools SNP 354124 354124 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C17%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold368 SAMTools SNP 354752 354752 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold368 SAMTools SNP 354753 354753 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C19%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold368 SAMTools SNP 357204 357204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 357206 357206 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.053%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold368 SAMTools SNP 361146 361146 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C7%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 362297 362297 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C11%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold368 SAMTools SNP 368895 368895 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold368 SAMTools SNP 369248 369248 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold368 SAMTools SNP 369350 369350 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold368 SAMTools SNP 369398 369398 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold368 SAMTools SNP 370160 370160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold368 SAMTools SNP 370509 370509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold368 SAMTools SNP 370512 370512 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold368 SAMTools SNP 370602 370602 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C63%2C0:99 scaffold368 SAMTools SNP 371610 371610 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold368 SAMTools SNP 371661 371661 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold368 SAMTools SNP 371853 371853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C5%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold368 SAMTools SNP 371904 371904 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C6%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C154%2C0:99 scaffold368 SAMTools SNP 372515 372515 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 372635 372635 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C36%2C0:69 scaffold368 SAMTools SNP 372690 372690 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C93%2C0:99 scaffold368 SAMTools SNP 372794 372794 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 373006 373006 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold368 SAMTools SNP 373388 373388 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C19%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C244%2C0:99 scaffold368 SAMTools SNP 373412 373412 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold368 SAMTools SNP 373472 373472 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C75%2C63%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.8e-09%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold368 SAMTools SNP 374259 374259 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold368 SAMTools SNP 385396 385396 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold368 SAMTools SNP 388036 388036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold368 SAMTools SNP 388288 388288 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C24%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0043%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold368 SAMTools SNP 388301 388301 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C0.48%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold368 SAMTools SNP 388333 388333 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C19%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold368 SAMTools SNP 388745 388745 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold368 SAMTools SNP 410644 410644 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold368 SAMTools SNP 492914 492914 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold369 SAMTools SNP 996 996 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold369 SAMTools SNP 1026 1026 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold369 SAMTools SNP 1075 1075 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold369 SAMTools SNP 4121 4121 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold369 SAMTools SNP 4399 4399 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold369 SAMTools SNP 8437 8437 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold369 SAMTools SNP 23176 23176 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.32%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C35:38 scaffold369 SAMTools SNP 28763 28763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 30913 30913 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold369 SAMTools SNP 30914 30914 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold369 SAMTools SNP 32778 32778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold369 SAMTools SNP 33456 33456 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C242:99 scaffold369 SAMTools SNP 36964 36964 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold369 SAMTools SNP 42042 42042 62.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold369 SAMTools SNP 42187 42187 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold369 SAMTools SNP 44876 44876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C100%2C41%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.0039%2C8.4e-15%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold369 SAMTools SNP 46098 46098 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C37%2C17%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 46116 46116 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C76%2C7%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.00018%2C1%2C0.0056%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold369 SAMTools SNP 46209 46209 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold369 SAMTools SNP 47581 47581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C27%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold369 SAMTools SNP 47990 47990 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C37%2C125%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 48101 48101 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C213%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold369 SAMTools SNP 48464 48464 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold369 SAMTools SNP 48622 48622 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C41%2C17%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.019%2C0.0045%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold369 SAMTools SNP 48759 48759 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C22%2C1%2C36%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.3e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold369 SAMTools SNP 49606 49606 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C2%2C37%2C121%3BMQ%3D50%3BFQ%3D-142%3BPV4%3D0.00015%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C115%2C0:99 scaffold369 SAMTools SNP 50865 50865 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C41%2C44%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 50898 50898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.3%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold369 SAMTools SNP 51946 51946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C104%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 51961 51961 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold369 SAMTools SNP 52763 52763 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C4.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 52783 52783 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C11%2C11%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.61%2C8.2e-45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold369 SAMTools SNP 53101 53101 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold369 SAMTools SNP 53416 53416 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C32%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D1%2C1.2e-18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C88%2C0:99 scaffold369 SAMTools SNP 53985 53985 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold369 SAMTools SNP 56052 56052 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C74%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C5e-05%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 56563 56563 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.12%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 56704 56704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 57205 57205 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 57235 57235 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C30%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.043%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold369 SAMTools SNP 57253 57253 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C19%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold369 SAMTools SNP 57718 57718 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold369 SAMTools SNP 57730 57730 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold369 SAMTools SNP 58267 58267 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 58297 58297 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold369 SAMTools SNP 58676 58676 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0017%2C5e-15%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold369 SAMTools SNP 58734 58734 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C16%2C6%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.27%2C5e-38%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold369 SAMTools SNP 58862 58862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold369 SAMTools SNP 60719 60719 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.24%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C247:99 scaffold369 SAMTools SNP 62494 62494 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 63808 63808 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold369 SAMTools SNP 63844 63844 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C18%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.014%2C2.1e-11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold369 SAMTools SNP 66680 66680 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C28%2C35%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 67172 67172 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C7%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 68686 68686 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C57%2C0:99 scaffold369 SAMTools SNP 72793 72793 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold369 SAMTools SNP 74180 74180 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.059%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C252:50 scaffold369 SAMTools SNP 74214 74214 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.43%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C184:67 scaffold369 SAMTools SNP 74220 74220 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C55:58 scaffold369 SAMTools SNP 76524 76524 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold369 SAMTools SNP 76929 76929 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold369 SAMTools SNP 76986 76986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold369 SAMTools SNP 77021 77021 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold369 SAMTools SNP 77029 77029 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold369 SAMTools SNP 77474 77474 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 77483 77483 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold369 SAMTools SNP 78631 78631 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 78657 78657 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold369 SAMTools SNP 79681 79681 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold369 SAMTools SNP 81915 81915 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C37%2C0%2C43%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1e-07%2C5.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold369 SAMTools SNP 82684 82684 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C23%2C0%2C55%3BMQ%3D50%3BFQ%3D122%3BPV4%3D5.8e-26%2C5.4e-52%2C1%2C4.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold369 SAMTools SNP 84004 84004 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C59%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C6.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C244:99 scaffold369 SAMTools SNP 84053 84053 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold369 SAMTools SNP 89460 89460 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold369 SAMTools SNP 90119 90119 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 90592 90592 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 90696 90696 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C162:93 scaffold369 SAMTools SNP 91012 91012 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold369 SAMTools SNP 91050 91050 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.14%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C171:99 scaffold369 SAMTools SNP 91305 91305 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C18%2C0:33 scaffold369 SAMTools SNP 91312 91312 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C23:26 scaffold369 SAMTools SNP 91485 91485 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C160:70 scaffold369 SAMTools SNP 91646 91646 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C205:99 scaffold369 SAMTools SNP 91854 91854 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold369 SAMTools SNP 92512 92512 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C107:99 scaffold369 SAMTools SNP 99454 99454 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C27%2C0:51 scaffold369 SAMTools SNP 99551 99551 52.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold369 SAMTools SNP 101757 101757 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold369 SAMTools SNP 109081 109081 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold369 SAMTools SNP 109504 109504 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C3.3e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C61:64 scaffold369 SAMTools SNP 109590 109590 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C96%2C0:99 scaffold369 SAMTools SNP 127937 127937 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D47%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C142:99 scaffold369 SAMTools SNP 128234 128234 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold369 SAMTools SNP 128271 128271 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold369 SAMTools SNP 128783 128783 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold369 SAMTools SNP 129710 129710 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.016%2C0.44%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold369 SAMTools SNP 129749 129749 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C7%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.57%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold369 SAMTools SNP 129771 129771 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold369 SAMTools SNP 129779 129779 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold369 SAMTools SNP 129806 129806 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.28%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold369 SAMTools SNP 129941 129941 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold369 SAMTools SNP 129952 129952 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold369 SAMTools SNP 129982 129982 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold369 SAMTools SNP 130025 130025 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold369 SAMTools SNP 130751 130751 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold369 SAMTools SNP 131118 131118 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C67:70 scaffold369 SAMTools SNP 131150 131150 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold369 SAMTools SNP 131330 131330 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold369 SAMTools SNP 131585 131585 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.43%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold369 SAMTools SNP 132093 132093 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold369 SAMTools SNP 132111 132111 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold369 SAMTools SNP 133525 133525 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C21%2C0:39 scaffold369 SAMTools SNP 147372 147372 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold369 SAMTools SNP 148834 148834 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold369 SAMTools SNP 148900 148900 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C127:51 scaffold369 SAMTools SNP 148954 148954 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold369 SAMTools SNP 148972 148972 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold369 SAMTools SNP 149852 149852 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold369 SAMTools SNP 149987 149987 35.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold37 SAMTools SNP 46354 46354 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold37 SAMTools SNP 46464 46464 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 62145 62145 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 62494 62494 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold37 SAMTools SNP 62527 62527 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold37 SAMTools SNP 66874 66874 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold37 SAMTools SNP 68267 68267 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold37 SAMTools SNP 68935 68935 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 69299 69299 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 69311 69311 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 69582 69582 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold37 SAMTools SNP 70112 70112 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold37 SAMTools SNP 70950 70950 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold37 SAMTools SNP 71453 71453 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold37 SAMTools SNP 71468 71468 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold37 SAMTools SNP 71576 71576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 72339 72339 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 73503 73503 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold37 SAMTools SNP 74227 74227 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold37 SAMTools SNP 180457 180457 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 180465 180465 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 180741 180741 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 180981 180981 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 183607 183607 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold37 SAMTools SNP 184025 184025 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.061%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold37 SAMTools SNP 185304 185304 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C243:99 scaffold37 SAMTools SNP 187093 187093 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold37 SAMTools SNP 187094 187094 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.4e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold37 SAMTools SNP 192422 192422 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 192778 192778 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold37 SAMTools SNP 209611 209611 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold37 SAMTools SNP 212660 212660 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold37 SAMTools SNP 212684 212684 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold37 SAMTools SNP 225482 225482 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold37 SAMTools SNP 255079 255079 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 255933 255933 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold37 SAMTools SNP 255947 255947 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 53823 53823 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 53877 53877 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold370 SAMTools SNP 63914 63914 42.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold370 SAMTools SNP 63949 63949 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold370 SAMTools SNP 63980 63980 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C0.21%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold370 SAMTools SNP 64014 64014 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold370 SAMTools SNP 64032 64032 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold370 SAMTools SNP 72012 72012 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C24%2C0:45 scaffold370 SAMTools SNP 72122 72122 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold370 SAMTools SNP 73348 73348 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold370 SAMTools SNP 78520 78520 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 78937 78937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold370 SAMTools SNP 83809 83809 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 115640 115640 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C170:31 scaffold370 SAMTools SNP 116677 116677 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C7.9e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C235:99 scaffold370 SAMTools SNP 117082 117082 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C17%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold370 SAMTools SNP 117643 117643 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C19%2C21%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C5.4e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold370 SAMTools SNP 117956 117956 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold370 SAMTools SNP 118054 118054 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C57%2C0:99 scaffold370 SAMTools SNP 118579 118579 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold370 SAMTools SNP 118645 118645 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 119323 119323 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 119366 119366 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold370 SAMTools SNP 120331 120331 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold370 SAMTools SNP 121011 121011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold370 SAMTools SNP 122214 122214 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.002%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold370 SAMTools SNP 122218 122218 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C7.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C246:61 scaffold370 SAMTools SNP 122273 122273 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0034%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C238:99 scaffold370 SAMTools SNP 122276 122276 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0034%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C238:99 scaffold370 SAMTools SNP 122808 122808 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold370 SAMTools SNP 122964 122964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold370 SAMTools SNP 123268 123268 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D3.3e-06%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold370 SAMTools SNP 123656 123656 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold370 SAMTools SNP 124136 124136 7.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold370 SAMTools SNP 125160 125160 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C105%2C0:99 scaffold370 SAMTools SNP 125526 125526 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C244:99 scaffold370 SAMTools SNP 126371 126371 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold370 SAMTools SNP 126410 126410 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold370 SAMTools SNP 126419 126419 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 126932 126932 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 127547 127547 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 127565 127565 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 127809 127809 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold370 SAMTools SNP 128065 128065 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold370 SAMTools SNP 128066 128066 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.29%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold370 SAMTools SNP 129841 129841 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.28%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C215:51 scaffold370 SAMTools SNP 132099 132099 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C18%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C214%2C0:99 scaffold370 SAMTools SNP 132153 132153 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.029%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold370 SAMTools SNP 132183 132183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C21%3BMQ%3D50%3BFQ%3D-77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C50%2C0:97 scaffold370 SAMTools SNP 132741 132741 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C69%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 132985 132985 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C81%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C6.5e-09%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C99:99 scaffold370 SAMTools SNP 135579 135579 27.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold370 SAMTools SNP 136506 136506 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 137634 137634 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold370 SAMTools SNP 138748 138748 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 138871 138871 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold370 SAMTools SNP 138872 138872 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold370 SAMTools SNP 142422 142422 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold370 SAMTools SNP 142548 142548 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 143280 143280 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold370 SAMTools SNP 143989 143989 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C39%2C0:75 scaffold370 SAMTools SNP 144079 144079 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold370 SAMTools SNP 144101 144101 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold370 SAMTools SNP 144386 144386 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 145836 145836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold370 SAMTools SNP 145883 145883 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold370 SAMTools SNP 146389 146389 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold370 SAMTools SNP 176029 176029 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 179878 179878 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold370 SAMTools SNP 180235 180235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold370 SAMTools SNP 180596 180596 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.55%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold370 SAMTools SNP 180599 180599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C18%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.55%2C0.3%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold370 SAMTools SNP 181996 181996 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold370 SAMTools SNP 182023 182023 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold370 SAMTools SNP 184872 184872 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 191450 191450 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold370 SAMTools SNP 192483 192483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold370 SAMTools SNP 192486 192486 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.001%2C0.048%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold370 SAMTools SNP 193151 193151 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C0.032%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold370 SAMTools SNP 193768 193768 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold370 SAMTools SNP 194689 194689 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold370 SAMTools SNP 206607 206607 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 206628 206628 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C183:99 scaffold370 SAMTools SNP 207189 207189 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C171:99 scaffold370 SAMTools SNP 207624 207624 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C144%2C0:99 scaffold370 SAMTools SNP 207699 207699 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C45%2C0:87 scaffold370 SAMTools SNP 208851 208851 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C216:99 scaffold370 SAMTools SNP 208863 208863 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold370 SAMTools SNP 208911 208911 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C49:52 scaffold370 SAMTools SNP 208947 208947 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold370 SAMTools SNP 209262 209262 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold370 SAMTools SNP 209307 209307 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C2.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C245:99 scaffold370 SAMTools SNP 211485 211485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold370 SAMTools SNP 211801 211801 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold370 SAMTools SNP 211852 211852 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold370 SAMTools SNP 212889 212889 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold370 SAMTools SNP 214781 214781 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold370 SAMTools SNP 220045 220045 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold370 SAMTools SNP 220288 220288 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C39%2C0:72 scaffold370 SAMTools SNP 220303 220303 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C42%2C0:72 scaffold370 SAMTools SNP 220537 220537 47.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold370 SAMTools SNP 231588 231588 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold370 SAMTools SNP 231810 231810 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C84%2C0:99 scaffold370 SAMTools SNP 231960 231960 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C37%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold370 SAMTools SNP 232408 232408 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold370 SAMTools SNP 232450 232450 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 233010 233010 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C254:30 scaffold370 SAMTools SNP 233014 233014 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold370 SAMTools SNP 233077 233077 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.46%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold370 SAMTools SNP 233514 233514 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold370 SAMTools SNP 233531 233531 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold370 SAMTools SNP 234344 234344 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C38:41 scaffold370 SAMTools SNP 235306 235306 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 235345 235345 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold370 SAMTools SNP 236944 236944 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 238012 238012 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold370 SAMTools SNP 238137 238137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold370 SAMTools SNP 267459 267459 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold370 SAMTools SNP 267533 267533 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold370 SAMTools SNP 296467 296467 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold370 SAMTools SNP 296545 296545 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 296556 296556 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold370 SAMTools SNP 296599 296599 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.07%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold370 SAMTools SNP 297057 297057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.095%2C0.36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold370 SAMTools SNP 297342 297342 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C8%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold370 SAMTools SNP 297362 297362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 298035 298035 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C17%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C192:99 scaffold370 SAMTools SNP 298551 298551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold370 SAMTools SNP 298592 298592 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold370 SAMTools SNP 299854 299854 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C44%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold370 SAMTools SNP 300592 300592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C17%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold370 SAMTools SNP 300602 300602 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold370 SAMTools SNP 300979 300979 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold370 SAMTools SNP 301181 301181 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C6%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold370 SAMTools SNP 301224 301224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C21%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold370 SAMTools SNP 301320 301320 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold370 SAMTools SNP 302468 302468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold370 SAMTools SNP 302798 302798 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C0.13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold370 SAMTools SNP 302802 302802 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold370 SAMTools SNP 306277 306277 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D0.33%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C41:43 scaffold370 SAMTools SNP 306297 306297 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold370 SAMTools SNP 306870 306870 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 306909 306909 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 306951 306951 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.06%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C209:99 scaffold370 SAMTools SNP 307704 307704 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold370 SAMTools SNP 308269 308269 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C6%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold370 SAMTools SNP 308280 308280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold370 SAMTools SNP 308711 308711 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 308742 308742 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold370 SAMTools SNP 309617 309617 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold370 SAMTools SNP 309867 309867 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold370 SAMTools SNP 309911 309911 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold370 SAMTools SNP 310151 310151 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 310787 310787 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1705%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C844%2C853%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 312407 312407 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1982%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D302%2C546%2C262%2C856%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-09%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 313359 313359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3206%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1238%2C1233%2C217%2C517%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-23%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 313380 313380 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2819%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C316%2C820%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 313413 313413 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1808%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C44%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold370 SAMTools SNP 314014 314014 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C290%2C0%2C150%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C3.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold370 SAMTools SNP 314016 314016 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C10%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C191:40 scaffold370 SAMTools SNP 314018 314018 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C229:98 scaffold370 SAMTools SNP 314044 314044 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold370 SAMTools SNP 315798 315798 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 318585 318585 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C13%2C44%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00071%2C1.2e-26%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold370 SAMTools SNP 318734 318734 222 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C212%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0%2C255%2C255%2C239:99 scaffold370 SAMTools SNP 319006 319006 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C150:30 scaffold370 SAMTools SNP 319931 319931 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C30%2C0:57 scaffold370 SAMTools SNP 320562 320562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 320574 320574 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C27%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.21%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold370 SAMTools SNP 320595 320595 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C7%3BMQ%3D49%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C236:99 scaffold370 SAMTools SNP 321220 321220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold370 SAMTools SNP 321353 321353 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold370 SAMTools SNP 321385 321385 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold370 SAMTools SNP 321681 321681 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C21%2C2%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold370 SAMTools SNP 321919 321919 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C37%2C0%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.57%2C0.25%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold370 SAMTools SNP 321922 321922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold370 SAMTools SNP 321949 321949 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold370 SAMTools SNP 322222 322222 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C16%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.067%2C5.2e-29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold370 SAMTools SNP 323115 323115 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold370 SAMTools SNP 323626 323626 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold370 SAMTools SNP 325621 325621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 325955 325955 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold370 SAMTools SNP 326148 326148 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.12%2C2.8e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold370 SAMTools SNP 326178 326178 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.061%2C1.9e-05%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold370 SAMTools SNP 326184 326184 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold370 SAMTools SNP 326220 326220 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold370 SAMTools SNP 327152 327152 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 327377 327377 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 327486 327486 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C14%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.22%2C2.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold370 SAMTools SNP 327546 327546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold370 SAMTools SNP 327597 327597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 327961 327961 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C7.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold370 SAMTools SNP 328048 328048 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold370 SAMTools SNP 328427 328427 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.038%2C1.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold370 SAMTools SNP 328850 328850 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold370 SAMTools SNP 329411 329411 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C27%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.06%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold370 SAMTools SNP 329982 329982 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C6.4e-22%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C102:99 scaffold370 SAMTools SNP 330589 330589 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C108%2C0:99 scaffold370 SAMTools SNP 330993 330993 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold370 SAMTools SNP 331017 331017 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold370 SAMTools SNP 331029 331029 64.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold370 SAMTools SNP 332392 332392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold370 SAMTools SNP 332454 332454 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold370 SAMTools SNP 332956 332956 55.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold370 SAMTools SNP 333028 333028 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C205:99 scaffold370 SAMTools SNP 333369 333369 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 333963 333963 12.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold370 SAMTools SNP 334053 334053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C7.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 334462 334462 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C84%2C0:99 scaffold370 SAMTools SNP 334534 334534 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C135%2C0:99 scaffold370 SAMTools SNP 334761 334761 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C88:71 scaffold370 SAMTools SNP 335184 335184 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.022%2C9.1e-11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold370 SAMTools SNP 335337 335337 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 337301 337301 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 337314 337314 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 337397 337397 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold370 SAMTools SNP 337461 337461 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C87%2C0:99 scaffold370 SAMTools SNP 338091 338091 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.6%2C0.015%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold370 SAMTools SNP 341260 341260 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C7%2C11%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.54%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold370 SAMTools SNP 341465 341465 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold370 SAMTools SNP 341480 341480 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C5.1e-09%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 341514 341514 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1.4e-11%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold370 SAMTools SNP 341702 341702 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C3%2C19%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.32%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold370 SAMTools SNP 349336 349336 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 349380 349380 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 363383 363383 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C26%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold370 SAMTools SNP 364135 364135 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C78%2C0:99 scaffold370 SAMTools SNP 365597 365597 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold370 SAMTools SNP 367482 367482 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 368257 368257 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 368573 368573 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 372294 372294 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 372301 372301 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 413615 413615 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 413645 413645 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 413978 413978 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold370 SAMTools SNP 414619 414619 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.1%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold370 SAMTools SNP 414648 414648 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.61%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold370 SAMTools SNP 414968 414968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.31%2C0.094%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold370 SAMTools SNP 419232 419232 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold370 SAMTools SNP 419462 419462 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C231:99 scaffold370 SAMTools SNP 419508 419508 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.33%2C0.083%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold370 SAMTools SNP 419766 419766 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.57%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C218:99 scaffold370 SAMTools SNP 419832 419832 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.3%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold370 SAMTools SNP 420456 420456 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C171:99 scaffold370 SAMTools SNP 420573 420573 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold370 SAMTools SNP 422099 422099 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold370 SAMTools SNP 422115 422115 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold370 SAMTools SNP 422116 422116 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold370 SAMTools SNP 422373 422373 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 422407 422407 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold370 SAMTools SNP 422900 422900 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold370 SAMTools SNP 422963 422963 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold370 SAMTools SNP 423439 423439 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold370 SAMTools SNP 423466 423466 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 423481 423481 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold370 SAMTools SNP 423826 423826 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold370 SAMTools SNP 424240 424240 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 424675 424675 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 425048 425048 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold370 SAMTools SNP 425422 425422 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold370 SAMTools SNP 425428 425428 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold370 SAMTools SNP 425488 425488 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C3.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C121:80 scaffold370 SAMTools SNP 425876 425876 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 426443 426443 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold370 SAMTools SNP 426464 426464 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 427141 427141 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold370 SAMTools SNP 427183 427183 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold370 SAMTools SNP 427599 427599 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C69:72 scaffold370 SAMTools SNP 428830 428830 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold370 SAMTools SNP 429409 429409 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 429436 429436 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold370 SAMTools SNP 429458 429458 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0057%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C160:57 scaffold370 SAMTools SNP 429664 429664 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold370 SAMTools SNP 429701 429701 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold370 SAMTools SNP 430103 430103 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.026%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold370 SAMTools SNP 430118 430118 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 430135 430135 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold370 SAMTools SNP 430665 430665 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold370 SAMTools SNP 430678 430678 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold370 SAMTools SNP 430895 430895 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold370 SAMTools SNP 435448 435448 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C214:99 scaffold370 SAMTools SNP 435550 435550 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C2.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold370 SAMTools SNP 436769 436769 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold370 SAMTools SNP 440106 440106 35.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold370 SAMTools SNP 440144 440144 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.091%2C3.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C214:75 scaffold370 SAMTools SNP 440519 440519 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C185:93 scaffold370 SAMTools SNP 440876 440876 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold370 SAMTools SNP 440885 440885 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold370 SAMTools SNP 444671 444671 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 445711 445711 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C10%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D3.5e-05%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold370 SAMTools SNP 446029 446029 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold370 SAMTools SNP 446285 446285 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C39%2C1%3BMQ%3D48%3BFQ%3D102%3BPV4%3D0.55%2C7.6e-19%2C0.04%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold370 SAMTools SNP 446314 446314 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D47%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold370 SAMTools SNP 446572 446572 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold370 SAMTools SNP 450875 450875 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 451122 451122 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 452790 452790 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1e-12%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C20:23 scaffold370 SAMTools SNP 454372 454372 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.046%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold370 SAMTools SNP 455253 455253 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 455287 455287 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold370 SAMTools SNP 455364 455364 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 456766 456766 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold370 SAMTools SNP 458133 458133 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold370 SAMTools SNP 458172 458172 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 458258 458258 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C33:36 scaffold370 SAMTools SNP 458620 458620 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 459452 459452 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 459503 459503 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 459511 459511 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 461825 461825 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 461852 461852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 462555 462555 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold370 SAMTools SNP 464254 464254 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C49%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold370 SAMTools SNP 464264 464264 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold370 SAMTools SNP 464778 464778 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 465603 465603 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 465675 465675 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 466113 466113 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 466131 466131 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 487600 487600 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold370 SAMTools SNP 487607 487607 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold370 SAMTools SNP 490179 490179 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold370 SAMTools SNP 567404 567404 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 572116 572116 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold370 SAMTools SNP 574103 574103 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold370 SAMTools SNP 574130 574130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold370 SAMTools SNP 574152 574152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C8%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1.6e-06%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold370 SAMTools SNP 574933 574933 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C17%2C16%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0007%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 574978 574978 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C92%2C11%2C39%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.15%2C1.3e-40%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold370 SAMTools SNP 575621 575621 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold370 SAMTools SNP 575660 575660 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.00053%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold370 SAMTools SNP 583422 583422 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold370 SAMTools SNP 583815 583815 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.23%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold370 SAMTools SNP 584558 584558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 584590 584590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 584974 584974 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 590651 590651 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 590958 590958 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 592470 592470 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold370 SAMTools SNP 597567 597567 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C39%2C0:75 scaffold370 SAMTools SNP 598374 598374 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.1e-31%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold370 SAMTools SNP 598596 598596 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C27%2C0:51 scaffold370 SAMTools SNP 625347 625347 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold370 SAMTools SNP 626114 626114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C95%2C254%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 626616 626616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C231%2C47%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 626671 626671 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C180%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 626704 626704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C56%2C25%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 627597 627597 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D628%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C363%2C62%2C101%3BMQ%3D50%3BFQ%3D206%3BPV4%3D4.3e-05%2C6.7e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold370 SAMTools SNP 627627 627627 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 628023 628023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold370 SAMTools SNP 628167 628167 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D164%2C11%2C69%2C21%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00011%2C8.2e-235%2C1%2C4.2e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold370 SAMTools SNP 632843 632843 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1.2e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C77:36 scaffold370 SAMTools SNP 634700 634700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 644607 644607 134 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.061%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C214:99 scaffold370 SAMTools SNP 644635 644635 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C209:99 scaffold370 SAMTools SNP 646743 646743 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold370 SAMTools SNP 646749 646749 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold370 SAMTools SNP 646875 646875 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold370 SAMTools SNP 647325 647325 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 647989 647989 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 648888 648888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 648942 648942 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 649257 649257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 649284 649284 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 649560 649560 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 649599 649599 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold370 SAMTools SNP 649981 649981 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold370 SAMTools SNP 650029 650029 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 650071 650071 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 650104 650104 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.14%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C127:54 scaffold370 SAMTools SNP 650241 650241 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold370 SAMTools SNP 650250 650250 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold370 SAMTools SNP 650271 650271 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 651086 651086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold370 SAMTools SNP 651294 651294 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold370 SAMTools SNP 651844 651844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 652389 652389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold370 SAMTools SNP 652844 652844 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold370 SAMTools SNP 652988 652988 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold370 SAMTools SNP 653736 653736 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 656562 656562 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 656589 656589 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 656613 656613 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 656636 656636 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 658322 658322 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 658358 658358 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 659088 659088 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 665502 665502 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 665923 665923 51.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold370 SAMTools SNP 670813 670813 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0022%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold370 SAMTools SNP 677451 677451 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold370 SAMTools SNP 678237 678237 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C230:61 scaffold370 SAMTools SNP 678324 678324 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C15%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold370 SAMTools SNP 678916 678916 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold370 SAMTools SNP 679069 679069 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 679073 679073 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C1%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.64%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold370 SAMTools SNP 679731 679731 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold370 SAMTools SNP 680092 680092 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold370 SAMTools SNP 680966 680966 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold370 SAMTools SNP 680967 680967 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold370 SAMTools SNP 681253 681253 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 681286 681286 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold370 SAMTools SNP 681304 681304 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold370 SAMTools SNP 681609 681609 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold370 SAMTools SNP 681639 681639 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.052%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold370 SAMTools SNP 681654 681654 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.19%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C102:99 scaffold370 SAMTools SNP 682047 682047 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold370 SAMTools SNP 682089 682089 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 682122 682122 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 682197 682197 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 682383 682383 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.021%2C3e-07%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold370 SAMTools SNP 682948 682948 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.67%2C0.33%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold370 SAMTools SNP 682954 682954 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C2%2C6%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold370 SAMTools SNP 683826 683826 63.8 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold370 SAMTools SNP 686858 686858 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 687295 687295 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C200:99 scaffold370 SAMTools SNP 687349 687349 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold370 SAMTools SNP 687361 687361 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.1%2C0.032%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold370 SAMTools SNP 687390 687390 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C126:80 scaffold370 SAMTools SNP 687391 687391 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C115:80 scaffold370 SAMTools SNP 687395 687395 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C220:79 scaffold370 SAMTools SNP 688050 688050 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.012%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold370 SAMTools SNP 688095 688095 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C28%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 688310 688310 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold370 SAMTools SNP 688613 688613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 688830 688830 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold370 SAMTools SNP 688882 688882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold370 SAMTools SNP 689674 689674 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold370 SAMTools SNP 692578 692578 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 692590 692590 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 692665 692665 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C156:48 scaffold370 SAMTools SNP 711562 711562 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 711563 711563 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C185:63 scaffold370 SAMTools SNP 711782 711782 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold370 SAMTools SNP 711791 711791 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 711842 711842 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C86%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6.2e-26%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold370 SAMTools SNP 711983 711983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C55%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold370 SAMTools SNP 712162 712162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 716205 716205 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold370 SAMTools SNP 719732 719732 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.3%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold370 SAMTools SNP 719758 719758 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 719762 719762 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 719846 719846 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold370 SAMTools SNP 719852 719852 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold370 SAMTools SNP 720180 720180 95.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold370 SAMTools SNP 720188 720188 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold370 SAMTools SNP 732109 732109 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold370 SAMTools SNP 732202 732202 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C51%2C0:99 scaffold370 SAMTools SNP 732284 732284 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold370 SAMTools SNP 732604 732604 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold370 SAMTools SNP 739935 739935 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 742768 742768 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold370 SAMTools SNP 757246 757246 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 758619 758619 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 843230 843230 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 843247 843247 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 846558 846558 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 847303 847303 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold370 SAMTools SNP 850450 850450 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold370 SAMTools SNP 894743 894743 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 894760 894760 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 897633 897633 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 898244 898244 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 911354 911354 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold370 SAMTools SNP 911398 911398 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 922235 922235 37.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold370 SAMTools SNP 930607 930607 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 931410 931410 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold370 SAMTools SNP 937001 937001 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 937008 937008 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold370 SAMTools SNP 937092 937092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 937570 937570 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold370 SAMTools SNP 937582 937582 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 937612 937612 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 937975 937975 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 945809 945809 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 945826 945826 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 946311 946311 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 947638 947638 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 948784 948784 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold370 SAMTools SNP 948978 948978 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 949002 949002 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold370 SAMTools SNP 949249 949249 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold370 SAMTools SNP 952447 952447 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold370 SAMTools SNP 965879 965879 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 966444 966444 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 966515 966515 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold370 SAMTools SNP 966900 966900 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C166:46 scaffold370 SAMTools SNP 966929 966929 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 968524 968524 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 969021 969021 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 969045 969045 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 969284 969284 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 969677 969677 17.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold370 SAMTools SNP 969718 969718 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold370 SAMTools SNP 970907 970907 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold370 SAMTools SNP 971797 971797 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 971913 971913 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold370 SAMTools SNP 972298 972298 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold370 SAMTools SNP 972650 972650 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold370 SAMTools SNP 972682 972682 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 974759 974759 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold370 SAMTools SNP 974761 974761 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold370 SAMTools SNP 974793 974793 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 975509 975509 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 976143 976143 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 976183 976183 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 976204 976204 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 976736 976736 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C154:43 scaffold370 SAMTools SNP 976823 976823 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold370 SAMTools SNP 996912 996912 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 997456 997456 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold370 SAMTools SNP 998180 998180 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold370 SAMTools SNP 998263 998263 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold370 SAMTools SNP 1003319 1003319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 1027025 1027025 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold370 SAMTools SNP 1027933 1027933 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold370 SAMTools SNP 1027941 1027941 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.019%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold370 SAMTools SNP 1028434 1028434 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C8%2C0%3BMQ%3D48%3BFQ%3D154%3BPV4%3D0.026%2C0.058%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold370 SAMTools SNP 1028523 1028523 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D48%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C172:99 scaffold370 SAMTools SNP 1028539 1028539 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold370 SAMTools SNP 1029305 1029305 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.18%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold370 SAMTools SNP 1029307 1029307 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.47%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold370 SAMTools SNP 1033441 1033441 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C8e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold370 SAMTools SNP 1054387 1054387 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.083%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C209:56 scaffold370 SAMTools SNP 1054512 1054512 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold370 SAMTools SNP 1054806 1054806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold370 SAMTools SNP 1056217 1056217 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold370 SAMTools SNP 1063012 1063012 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 1063015 1063015 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold370 SAMTools SNP 1065121 1065121 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.028%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold370 SAMTools SNP 1065467 1065467 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.27%2C0.31%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold370 SAMTools SNP 1066490 1066490 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold370 SAMTools SNP 1068631 1068631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold370 SAMTools SNP 1068652 1068652 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold370 SAMTools SNP 1068796 1068796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold370 SAMTools SNP 1070538 1070538 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold370 SAMTools SNP 1070699 1070699 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.036%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold370 SAMTools SNP 1074724 1074724 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C120%2C0:99 scaffold370 SAMTools SNP 1074781 1074781 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.088%2C2.1e-09%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold370 SAMTools SNP 1074782 1074782 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.088%2C2.3e-06%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold370 SAMTools SNP 1086826 1086826 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold371 SAMTools SNP 23540 23540 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold371 SAMTools SNP 23603 23603 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold371 SAMTools SNP 43771 43771 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold371 SAMTools SNP 43923 43923 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.079%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C184:99 scaffold371 SAMTools SNP 47832 47832 5.47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.03%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C24:28 scaffold371 SAMTools SNP 54511 54511 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C12%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.32%2C1.5e-26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold371 SAMTools SNP 57280 57280 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold371 SAMTools SNP 57508 57508 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold372 SAMTools SNP 4341 4341 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 4422 4422 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 4763 4763 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 4853 4853 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 4871 4871 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 5405 5405 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold372 SAMTools SNP 5409 5409 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C196:64 scaffold372 SAMTools SNP 5412 5412 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold372 SAMTools SNP 5913 5913 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold372 SAMTools SNP 5967 5967 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C87%2C0:99 scaffold372 SAMTools SNP 6039 6039 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C45%2C0:87 scaffold372 SAMTools SNP 6362 6362 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold372 SAMTools SNP 7020 7020 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C36%2C0:69 scaffold372 SAMTools SNP 7030 7030 18.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C27%2C21%2C51%2C0%2C45:10 scaffold372 SAMTools SNP 7088 7088 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold372 SAMTools SNP 26964 26964 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C25%2C48%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D3.6e-06%2C3.1e-31%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold372 SAMTools SNP 29621 29621 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold372 SAMTools SNP 29929 29929 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C7%3BMQ%3D29%3BFQ%3D38%3BPV4%3D0.18%2C0.088%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C65:68 scaffold372 SAMTools SNP 30494 30494 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C48%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C175%2C0:99 scaffold372 SAMTools SNP 30623 30623 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold372 SAMTools SNP 30626 30626 76 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C146%2C255%2C0%2C250:51 scaffold372 SAMTools SNP 31544 31544 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C23%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 31649 31649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.17%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 31655 31655 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C32%2C7%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.37%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 46429 46429 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 47175 47175 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold372 SAMTools SNP 49289 49289 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.22%2C7.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C191:44 scaffold372 SAMTools SNP 49570 49570 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C0.024%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C139:60 scaffold372 SAMTools SNP 49597 49597 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D43%3BFQ%3D18.1%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C138:48 scaffold372 SAMTools SNP 52059 52059 47.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D32%3BFQ%3D-35%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C8%2C0:14 scaffold372 SAMTools SNP 52444 52444 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.083%2C5.7e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C224:99 scaffold372 SAMTools SNP 53520 53520 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold372 SAMTools SNP 53562 53562 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold372 SAMTools SNP 54452 54452 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C228:99 scaffold372 SAMTools SNP 57814 57814 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.091%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C208:65 scaffold372 SAMTools SNP 59399 59399 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C5%3BMQ%3D48%3BFQ%3D10.4%3BPV4%3D0.59%2C3.7e-15%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C218:39 scaffold372 SAMTools SNP 59490 59490 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold372 SAMTools SNP 66956 66956 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C9%2C23%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.6%2C3.4e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold372 SAMTools SNP 68163 68163 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.015%2C1.7e-06%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold372 SAMTools SNP 70028 70028 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold372 SAMTools SNP 70033 70033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold372 SAMTools SNP 70264 70264 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C8%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 70460 70460 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.14%2C0.13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C208:99 scaffold372 SAMTools SNP 70531 70531 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C18%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.27%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold372 SAMTools SNP 70720 70720 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold372 SAMTools SNP 70721 70721 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 70756 70756 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.044%2C6.8e-11%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C209:81 scaffold372 SAMTools SNP 72510 72510 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C32%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold372 SAMTools SNP 73315 73315 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C6.9e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 73690 73690 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C26%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C3.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 74053 74053 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C19%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.56%2C6.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C225:99 scaffold372 SAMTools SNP 74189 74189 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C54%2C0:99 scaffold372 SAMTools SNP 74645 74645 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C39%2C0:75 scaffold372 SAMTools SNP 75364 75364 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C21%2C0:39 scaffold372 SAMTools SNP 75391 75391 57.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold372 SAMTools SNP 75759 75759 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C36%2C0:69 scaffold372 SAMTools SNP 75889 75889 29.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold372 SAMTools SNP 76347 76347 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C38%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.57%2C1.2e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold372 SAMTools SNP 76375 76375 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold372 SAMTools SNP 76764 76764 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold372 SAMTools SNP 76790 76790 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold372 SAMTools SNP 79477 79477 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C23%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C114:99 scaffold372 SAMTools SNP 93859 93859 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.16%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C173:93 scaffold372 SAMTools SNP 96703 96703 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 97018 97018 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold372 SAMTools SNP 98514 98514 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C100:99 scaffold372 SAMTools SNP 100800 100800 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold372 SAMTools SNP 101258 101258 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C12%2C16%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.42%2C1.3e-65%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold372 SAMTools SNP 101400 101400 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C54%2C0:99 scaffold372 SAMTools SNP 101907 101907 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold372 SAMTools SNP 101971 101971 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C73%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.00092%2C1%2C1%2C3.9e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold372 SAMTools SNP 103089 103089 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2498%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D623%2C782%2C445%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-21%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 103454 103454 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.08%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C32:35 scaffold372 SAMTools SNP 104368 104368 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold372 SAMTools SNP 105753 105753 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1580%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C700%2C162%2C180%3BMQ%3D48%3BFQ%3D225%3BPV4%3D4.4e-14%2C0.00021%2C0.0027%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 105795 105795 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1986%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C600%2C869%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.41%2C0.4%2C0.4%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold372 SAMTools SNP 107990 107990 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold372 SAMTools SNP 108374 108374 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4017%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1085%2C828%2C1187%2C880%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 109071 109071 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 110856 110856 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold372 SAMTools SNP 110966 110966 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold372 SAMTools SNP 111233 111233 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 111242 111242 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 112059 112059 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold372 SAMTools SNP 112095 112095 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.021%2C0.089%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C186:99 scaffold372 SAMTools SNP 115746 115746 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C22%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C252:99 scaffold372 SAMTools SNP 116015 116015 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 119888 119888 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold372 SAMTools SNP 127503 127503 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 135595 135595 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold372 SAMTools SNP 135631 135631 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold372 SAMTools SNP 137927 137927 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold372 SAMTools SNP 144592 144592 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold372 SAMTools SNP 144616 144616 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold372 SAMTools SNP 144902 144902 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.028%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold372 SAMTools SNP 144922 144922 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0004%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold372 SAMTools SNP 145472 145472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C217%2C19%2C230%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C2.9e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 145963 145963 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C239:99 scaffold372 SAMTools SNP 146704 146704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C79%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.074%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 146710 146710 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C88%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.12%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 148228 148228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 148618 148618 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold372 SAMTools SNP 148909 148909 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.01%2C3.2e-09%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C234:31 scaffold372 SAMTools SNP 150790 150790 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 150802 150802 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.38%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold372 SAMTools SNP 151790 151790 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold372 SAMTools SNP 161160 161160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold372 SAMTools SNP 161216 161216 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold372 SAMTools SNP 161253 161253 49.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold372 SAMTools SNP 161814 161814 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C225:99 scaffold372 SAMTools SNP 162513 162513 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C73:58 scaffold372 SAMTools SNP 163000 163000 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C0.1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C151:52 scaffold372 SAMTools SNP 163061 163061 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold372 SAMTools SNP 163076 163076 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.37%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C185:99 scaffold372 SAMTools SNP 164051 164051 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold372 SAMTools SNP 164060 164060 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold372 SAMTools SNP 173412 173412 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.00054%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold372 SAMTools SNP 173422 173422 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.00089%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold372 SAMTools SNP 174151 174151 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold372 SAMTools SNP 174163 174163 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold372 SAMTools SNP 174348 174348 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.036%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C210:99 scaffold372 SAMTools SNP 174349 174349 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold372 SAMTools SNP 174434 174434 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C25%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C171:99 scaffold372 SAMTools SNP 174436 174436 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C240:99 scaffold372 SAMTools SNP 174824 174824 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold372 SAMTools SNP 174827 174827 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold372 SAMTools SNP 174920 174920 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold372 SAMTools SNP 175799 175799 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold372 SAMTools SNP 176110 176110 72.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C12%2C0:21 scaffold372 SAMTools SNP 176116 176116 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold372 SAMTools SNP 177044 177044 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold372 SAMTools SNP 177185 177185 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold372 SAMTools SNP 177501 177501 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold372 SAMTools SNP 177556 177556 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C53%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold372 SAMTools SNP 178649 178649 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C5%2C5%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold372 SAMTools SNP 178700 178700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold372 SAMTools SNP 179096 179096 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0042%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold372 SAMTools SNP 179119 179119 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold372 SAMTools SNP 179161 179161 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold372 SAMTools SNP 182244 182244 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold372 SAMTools SNP 182276 182276 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold372 SAMTools SNP 202739 202739 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C22%2C0%3BMQ%3D48%3BFQ%3D199%3BPV4%3D1%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C247:99 scaffold372 SAMTools SNP 202984 202984 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C0%2C12%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold372 SAMTools SNP 203140 203140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold372 SAMTools SNP 204152 204152 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold372 SAMTools SNP 209285 209285 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold372 SAMTools SNP 210478 210478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold374 SAMTools SNP 27707 27707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 100055 100055 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold374 SAMTools SNP 125566 125566 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold374 SAMTools SNP 128349 128349 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold374 SAMTools SNP 129370 129370 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold374 SAMTools SNP 164517 164517 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C36%2C0:69 scaffold374 SAMTools SNP 164613 164613 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold374 SAMTools SNP 165037 165037 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold374 SAMTools SNP 166530 166530 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.4%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C85:81 scaffold374 SAMTools SNP 339340 339340 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 340028 340028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 346181 346181 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 346203 346203 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 347033 347033 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 347034 347034 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 362269 362269 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold374 SAMTools SNP 364689 364689 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold374 SAMTools SNP 382968 382968 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold374 SAMTools SNP 383009 383009 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold374 SAMTools SNP 423600 423600 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold374 SAMTools SNP 429700 429700 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C129%2C0:99 scaffold374 SAMTools SNP 436246 436246 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 436292 436292 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold374 SAMTools SNP 449786 449786 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold374 SAMTools SNP 449825 449825 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C138%2C0:99 scaffold374 SAMTools SNP 450919 450919 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.24%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold374 SAMTools SNP 450979 450979 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold374 SAMTools SNP 503594 503594 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold376 SAMTools SNP 498 498 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D25%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C3%2C0:6 scaffold376 SAMTools SNP 1077 1077 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D38%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C36%2C0:69 scaffold376 SAMTools SNP 1137 1137 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C45%2C86%2C30%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.049%2C0.018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 1158 1158 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C87%2C80%2C74%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 3087 3087 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C100%2C35%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 3138 3138 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C42%2C16%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1.2e-43%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 3189 3189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 3249 3249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 3252 3252 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 4225 4225 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold376 SAMTools SNP 4234 4234 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold376 SAMTools SNP 4848 4848 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold376 SAMTools SNP 4881 4881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C6%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold376 SAMTools SNP 4950 4950 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C18%2C17%2C8%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.086%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold376 SAMTools SNP 5218 5218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C60%2C30%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-12%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5239 5239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C64%2C59%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5282 5282 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C25%2C54%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5508 5508 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C32%2C64%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5520 5520 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C45%2C38%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5586 5586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D540%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C160%2C140%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-06%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 5610 5610 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C302%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 5891 5891 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 6556 6556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C322%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 6577 6577 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold376 SAMTools SNP 9505 9505 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold376 SAMTools SNP 9522 9522 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C79:82 scaffold376 SAMTools SNP 11007 11007 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C48%2C0:93 scaffold376 SAMTools SNP 11163 11163 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold376 SAMTools SNP 15701 15701 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C61%2C0%2C63%3BMQ%3D44%3BFQ%3D121%3BPV4%3D5e-15%2C3.7e-41%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold376 SAMTools SNP 16092 16092 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C48%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold376 SAMTools SNP 16292 16292 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 16465 16465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold376 SAMTools SNP 16621 16621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C23%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 16827 16827 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold376 SAMTools SNP 19243 19243 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.0049%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C150:99 scaffold376 SAMTools SNP 19288 19288 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C233:99 scaffold376 SAMTools SNP 19466 19466 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold376 SAMTools SNP 19610 19610 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold376 SAMTools SNP 19998 19998 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold376 SAMTools SNP 20373 20373 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold376 SAMTools SNP 20532 20532 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold376 SAMTools SNP 20565 20565 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold376 SAMTools SNP 20811 20811 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 21099 21099 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 21144 21144 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C9%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1.4e-06%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold376 SAMTools SNP 21189 21189 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold376 SAMTools SNP 21213 21213 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold376 SAMTools SNP 21770 21770 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold376 SAMTools SNP 21794 21794 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold376 SAMTools SNP 22343 22343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C38%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold376 SAMTools SNP 22354 22354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 22561 22561 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 23401 23401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.085%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 24468 24468 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.17%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C32:35 scaffold376 SAMTools SNP 24492 24492 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold376 SAMTools SNP 24566 24566 28.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold376 SAMTools SNP 27540 27540 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 34438 34438 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold376 SAMTools SNP 34441 34441 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C225:99 scaffold376 SAMTools SNP 34442 34442 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.38%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C234:99 scaffold376 SAMTools SNP 43780 43780 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 43781 43781 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.3%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 44490 44490 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C105%2C0:99 scaffold376 SAMTools SNP 44502 44502 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold376 SAMTools SNP 44987 44987 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C19%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.028%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold376 SAMTools SNP 46181 46181 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C19%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.33%2C0.0016%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 53570 53570 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C241:99 scaffold376 SAMTools SNP 53588 53588 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold376 SAMTools SNP 53816 53816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1.1e-21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 54275 54275 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C8%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.77%2C2.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold376 SAMTools SNP 54332 54332 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold376 SAMTools SNP 54521 54521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C19%2C64%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C2.9e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 54782 54782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C6.7e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 54926 54926 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.51%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold376 SAMTools SNP 60810 60810 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C48%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold376 SAMTools SNP 61270 61270 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C24%2C62%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C2.3e-36%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 70101 70101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold376 SAMTools SNP 70124 70124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold376 SAMTools SNP 70628 70628 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold376 SAMTools SNP 70833 70833 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold376 SAMTools SNP 70932 70932 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold376 SAMTools SNP 70944 70944 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold376 SAMTools SNP 70968 70968 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold376 SAMTools SNP 71333 71333 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 71342 71342 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 71447 71447 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 71563 71563 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold376 SAMTools SNP 73495 73495 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold376 SAMTools SNP 73549 73549 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold376 SAMTools SNP 73558 73558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold376 SAMTools SNP 73937 73937 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C35:38 scaffold376 SAMTools SNP 74027 74027 227 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C42%2C6%2C304%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.0021%2C0.088%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold376 SAMTools SNP 74722 74722 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C34%2C0%2C288%3BMQ%3D50%3BFQ%3D-199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold376 SAMTools SNP 75465 75465 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.033%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold376 SAMTools SNP 75471 75471 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold376 SAMTools SNP 75483 75483 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold376 SAMTools SNP 75504 75504 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.022%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold376 SAMTools SNP 75507 75507 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold376 SAMTools SNP 76968 76968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 77055 77055 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 77574 77574 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 78517 78517 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold376 SAMTools SNP 78764 78764 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold376 SAMTools SNP 78978 78978 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 81249 81249 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 81255 81255 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 82831 82831 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold376 SAMTools SNP 82864 82864 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 83148 83148 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.078%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold376 SAMTools SNP 83169 83169 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold376 SAMTools SNP 83202 83202 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold376 SAMTools SNP 84143 84143 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold376 SAMTools SNP 84182 84182 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold376 SAMTools SNP 84466 84466 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold376 SAMTools SNP 85646 85646 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold376 SAMTools SNP 85825 85825 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold376 SAMTools SNP 86154 86154 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold376 SAMTools SNP 86190 86190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold376 SAMTools SNP 86589 86589 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.27%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold376 SAMTools SNP 86592 86592 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold376 SAMTools SNP 86637 86637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold376 SAMTools SNP 87673 87673 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C5%2C0:8 scaffold376 SAMTools SNP 94020 94020 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C18%2C0:33 scaffold376 SAMTools SNP 94098 94098 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold376 SAMTools SNP 94460 94460 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 94499 94499 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 94523 94523 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold376 SAMTools SNP 94827 94827 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold376 SAMTools SNP 94872 94872 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold376 SAMTools SNP 95268 95268 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold376 SAMTools SNP 95424 95424 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C9%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold376 SAMTools SNP 95425 95425 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.063%2C0.0003%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold376 SAMTools SNP 95670 95670 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C25%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 95694 95694 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 96142 96142 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 96294 96294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 96315 96315 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 96333 96333 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 96375 96375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 98317 98317 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 98338 98338 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold376 SAMTools SNP 98386 98386 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C24%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 98413 98413 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 103625 103625 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C4%2C0%3BMQ%3D44%3BFQ%3D12.3%3BPV4%3D0.12%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold376 SAMTools SNP 105402 105402 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold376 SAMTools SNP 120832 120832 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C40%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.44%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 120869 120869 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C56%2C0%3BMQ%3D47%3BFQ%3D89%3BPV4%3D7.6e-09%2C6.9e-20%2C1%2C3.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C251:99 scaffold376 SAMTools SNP 120883 120883 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C9%2C9%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.075%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 120891 120891 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C16%3BMQ%3D44%3BFQ%3D104%3BPV4%3D0.079%2C2e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold376 SAMTools SNP 121916 121916 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold376 SAMTools SNP 125266 125266 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C117%2C0:99 scaffold376 SAMTools SNP 125666 125666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C115%2C5%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 126258 126258 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C227%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 133163 133163 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 133200 133200 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 133772 133772 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.46%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold376 SAMTools SNP 134495 134495 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold376 SAMTools SNP 136002 136002 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.28%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold376 SAMTools SNP 136101 136101 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 136938 136938 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold376 SAMTools SNP 136939 136939 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.12%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold376 SAMTools SNP 137442 137442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 137459 137459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 144543 144543 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold376 SAMTools SNP 144544 144544 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 144579 144579 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 144582 144582 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 149168 149168 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold376 SAMTools SNP 154374 154374 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold376 SAMTools SNP 154605 154605 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold376 SAMTools SNP 155023 155023 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0354%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C8.8e-12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold376 SAMTools SNP 155358 155358 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C6:45 scaffold376 SAMTools SNP 157121 157121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold376 SAMTools SNP 157160 157160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold376 SAMTools SNP 158105 158105 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C19%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.55%2C7.8e-15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold376 SAMTools SNP 158301 158301 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold376 SAMTools SNP 159269 159269 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold376 SAMTools SNP 159310 159310 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.23%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold376 SAMTools SNP 159917 159917 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold376 SAMTools SNP 159932 159932 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold376 SAMTools SNP 159939 159939 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold376 SAMTools SNP 159944 159944 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C0.012%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C178:69 scaffold376 SAMTools SNP 160476 160476 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C4%3BMQ%3D30%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C56:59 scaffold376 SAMTools SNP 161053 161053 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D41%3BFQ%3D73.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C106:99 scaffold376 SAMTools SNP 167595 167595 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold376 SAMTools SNP 169225 169225 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C48%2C0:93 scaffold376 SAMTools SNP 169276 169276 58.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold376 SAMTools SNP 169279 169279 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold376 SAMTools SNP 169751 169751 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C2%2C10%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.71%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold376 SAMTools SNP 170170 170170 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold376 SAMTools SNP 170185 170185 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold376 SAMTools SNP 170251 170251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C15%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.61%2C5.4e-19%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold376 SAMTools SNP 170275 170275 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C6.4e-12%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold376 SAMTools SNP 170338 170338 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold376 SAMTools SNP 171459 171459 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 171463 171463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.23%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold376 SAMTools SNP 171486 171486 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold376 SAMTools SNP 171811 171811 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold376 SAMTools SNP 171814 171814 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.54%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold376 SAMTools SNP 174868 174868 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold376 SAMTools SNP 175519 175519 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold376 SAMTools SNP 175597 175597 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C219:99 scaffold376 SAMTools SNP 178438 178438 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C250:99 scaffold376 SAMTools SNP 178468 178468 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.29%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C233:99 scaffold376 SAMTools SNP 178512 178512 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0016%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold376 SAMTools SNP 179043 179043 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C9%2C27%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.056%2C1%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold376 SAMTools SNP 180139 180139 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold376 SAMTools SNP 180743 180743 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold376 SAMTools SNP 180781 180781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold376 SAMTools SNP 180979 180979 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C167:99 scaffold376 SAMTools SNP 181012 181012 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 181222 181222 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold376 SAMTools SNP 181547 181547 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold376 SAMTools SNP 181669 181669 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C197:96 scaffold376 SAMTools SNP 181878 181878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold376 SAMTools SNP 181929 181929 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold376 SAMTools SNP 181938 181938 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold376 SAMTools SNP 185511 185511 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold376 SAMTools SNP 185673 185673 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold376 SAMTools SNP 186158 186158 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.63%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold376 SAMTools SNP 188032 188032 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold376 SAMTools SNP 188165 188165 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C203:31 scaffold376 SAMTools SNP 208067 208067 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C9.4e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold376 SAMTools SNP 231640 231640 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 243764 243764 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold376 SAMTools SNP 253170 253170 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 282654 282654 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C18%2C0:33 scaffold376 SAMTools SNP 289457 289457 47.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold376 SAMTools SNP 290725 290725 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold376 SAMTools SNP 294738 294738 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold376 SAMTools SNP 303783 303783 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 308889 308889 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C102:63 scaffold376 SAMTools SNP 319021 319021 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold376 SAMTools SNP 319843 319843 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 319983 319983 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold376 SAMTools SNP 320015 320015 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold376 SAMTools SNP 320159 320159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold376 SAMTools SNP 320179 320179 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C32:35 scaffold376 SAMTools SNP 320343 320343 72.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold376 SAMTools SNP 334288 334288 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold376 SAMTools SNP 334515 334515 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 334574 334574 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0017%2C0.034%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C222:99 scaffold376 SAMTools SNP 336518 336518 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C12%2C74%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 337071 337071 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 337685 337685 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C7%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold376 SAMTools SNP 337960 337960 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.13%2C6.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold376 SAMTools SNP 338360 338360 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C42%2C0:80 scaffold376 SAMTools SNP 338561 338561 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C15%2C20%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C2.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold376 SAMTools SNP 340015 340015 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C51%2C0:99 scaffold376 SAMTools SNP 340205 340205 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C10%2C34%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.076%2C1.2e-82%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold376 SAMTools SNP 340889 340889 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold376 SAMTools SNP 342332 342332 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold376 SAMTools SNP 342360 342360 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C1%2C14%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.008%2C1.1e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold376 SAMTools SNP 342707 342707 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold376 SAMTools SNP 342719 342719 56.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold376 SAMTools SNP 342803 342803 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C27%2C0:51 scaffold376 SAMTools SNP 344909 344909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C22%2C13%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold376 SAMTools SNP 345260 345260 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold376 SAMTools SNP 345293 345293 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C4%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0076%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold376 SAMTools SNP 345601 345601 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.55%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold376 SAMTools SNP 345658 345658 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.00014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold376 SAMTools SNP 346362 346362 183 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C20%2C10%2C194%2C0%2C210:17 scaffold376 SAMTools SNP 347079 347079 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.067%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold376 SAMTools SNP 347897 347897 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold376 SAMTools SNP 348397 348397 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 348445 348445 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold376 SAMTools SNP 348873 348873 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold376 SAMTools SNP 348972 348972 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.067%2C0.00011%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C235:33 scaffold376 SAMTools SNP 349027 349027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 350264 350264 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 350518 350518 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold376 SAMTools SNP 351337 351337 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.061%2C0.001%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C237:46 scaffold376 SAMTools SNP 361700 361700 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold376 SAMTools SNP 361871 361871 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44.9%3BPV4%3D1%2C0.26%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C88:75 scaffold376 SAMTools SNP 377427 377427 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold376 SAMTools SNP 377688 377688 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold376 SAMTools SNP 378461 378461 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold376 SAMTools SNP 378497 378497 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold376 SAMTools SNP 380160 380160 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 380184 380184 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 380241 380241 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold376 SAMTools SNP 380259 380259 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.27%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold376 SAMTools SNP 381848 381848 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.26%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold376 SAMTools SNP 382697 382697 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold376 SAMTools SNP 382701 382701 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold376 SAMTools SNP 403766 403766 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold376 SAMTools SNP 404646 404646 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold376 SAMTools SNP 451354 451354 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 451358 451358 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold376 SAMTools SNP 451654 451654 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C248:99 scaffold376 SAMTools SNP 451792 451792 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C39%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold376 SAMTools SNP 453488 453488 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold376 SAMTools SNP 457748 457748 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 458232 458232 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold376 SAMTools SNP 458373 458373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold376 SAMTools SNP 459634 459634 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C8%3BMQ%3D50%3BFQ%3D-162%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold376 SAMTools SNP 459787 459787 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold376 SAMTools SNP 463707 463707 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold376 SAMTools SNP 463807 463807 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.044%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold376 SAMTools SNP 463817 463817 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0031%2C7.1e-05%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold376 SAMTools SNP 464701 464701 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold376 SAMTools SNP 465265 465265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold376 SAMTools SNP 465289 465289 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold376 SAMTools SNP 466231 466231 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C45%2C0:83 scaffold376 SAMTools SNP 466842 466842 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold376 SAMTools SNP 470853 470853 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C102%2C0:99 scaffold376 SAMTools SNP 470880 470880 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C69%2C0:99 scaffold376 SAMTools SNP 471273 471273 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold376 SAMTools SNP 471282 471282 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold376 SAMTools SNP 471306 471306 48.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold376 SAMTools SNP 472364 472364 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C243:80 scaffold376 SAMTools SNP 472430 472430 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.57%2C0.054%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C225:99 scaffold376 SAMTools SNP 472623 472623 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.4%2C0.0037%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C124:87 scaffold376 SAMTools SNP 472635 472635 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 472641 472641 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 472647 472647 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold376 SAMTools SNP 473148 473148 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 475836 475836 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold376 SAMTools SNP 475860 475860 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 476302 476302 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold376 SAMTools SNP 476359 476359 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold376 SAMTools SNP 476362 476362 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold376 SAMTools SNP 477003 477003 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C15%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold376 SAMTools SNP 477015 477015 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C5%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold376 SAMTools SNP 477035 477035 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C40%2C0:77 scaffold376 SAMTools SNP 477464 477464 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C96%2C28%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.46%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 477506 477506 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold376 SAMTools SNP 477832 477832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 479263 479263 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.022%2C0.21%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold376 SAMTools SNP 479516 479516 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C48%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.3%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 479932 479932 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold376 SAMTools SNP 480635 480635 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 483423 483423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 483432 483432 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C51%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 486049 486049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C42%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold376 SAMTools SNP 486104 486104 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold376 SAMTools SNP 486310 486310 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-9.51%3BPV4%3D1%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C18:21 scaffold376 SAMTools SNP 489688 489688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold376 SAMTools SNP 492572 492572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C47%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold376 SAMTools SNP 492608 492608 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C40%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold376 SAMTools SNP 492740 492740 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold376 SAMTools SNP 500754 500754 26.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold376 SAMTools SNP 501504 501504 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C27%2C0:51 scaffold376 SAMTools SNP 501692 501692 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C17:20 scaffold376 SAMTools SNP 501885 501885 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.27%2C1%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold376 SAMTools SNP 505492 505492 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C4%2C95%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 505516 505516 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 506671 506671 34 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold376 SAMTools SNP 507951 507951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold376 SAMTools SNP 510186 510186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold376 SAMTools SNP 516539 516539 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C7.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold376 SAMTools SNP 516797 516797 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.55%2C5.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C229:99 scaffold376 SAMTools SNP 527553 527553 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.36%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 528058 528058 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold376 SAMTools SNP 528075 528075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold376 SAMTools SNP 528082 528082 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C6%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.045%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold376 SAMTools SNP 528112 528112 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C2%2C21%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.02%2C2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold376 SAMTools SNP 528184 528184 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold376 SAMTools SNP 528340 528340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold376 SAMTools SNP 528370 528370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold376 SAMTools SNP 528766 528766 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C26%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold376 SAMTools SNP 528784 528784 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C14%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold376 SAMTools SNP 530707 530707 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0017%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold376 SAMTools SNP 530755 530755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold376 SAMTools SNP 532117 532117 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold376 SAMTools SNP 532594 532594 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold376 SAMTools SNP 532603 532603 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold376 SAMTools SNP 532675 532675 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold376 SAMTools SNP 532738 532738 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 533109 533109 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 533133 533133 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C8.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold376 SAMTools SNP 533175 533175 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C11%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.72%2C3.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold376 SAMTools SNP 533998 533998 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold376 SAMTools SNP 534028 534028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold376 SAMTools SNP 534184 534184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C55%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 545925 545925 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 546876 546876 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C215%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 546958 546958 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C12%2C137%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 551317 551317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 551320 551320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 551369 551369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C137%2C2%2C161%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold376 SAMTools SNP 552789 552789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C293%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold376 SAMTools SNP 553041 553041 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 553146 553146 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.8e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C119:57 scaffold376 SAMTools SNP 564858 564858 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 565409 565409 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold376 SAMTools SNP 565457 565457 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold376 SAMTools SNP 565657 565657 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold376 SAMTools SNP 565781 565781 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold376 SAMTools SNP 566584 566584 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold376 SAMTools SNP 566666 566666 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold376 SAMTools SNP 566830 566830 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold376 SAMTools SNP 567516 567516 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C21:24 scaffold376 SAMTools SNP 568033 568033 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C18%2C0:33 scaffold376 SAMTools SNP 568631 568631 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold376 SAMTools SNP 568820 568820 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold376 SAMTools SNP 568981 568981 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold376 SAMTools SNP 569300 569300 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold376 SAMTools SNP 580960 580960 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.4e-25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold376 SAMTools SNP 582260 582260 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C249:75 scaffold376 SAMTools SNP 588958 588958 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold376 SAMTools SNP 589268 589268 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.46%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C31:34 scaffold376 SAMTools SNP 589295 589295 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.04%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C77:79 scaffold376 SAMTools SNP 590233 590233 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 590997 590997 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C12:15 scaffold376 SAMTools SNP 591014 591014 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C68:71 scaffold376 SAMTools SNP 593937 593937 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold376 SAMTools SNP 594344 594344 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold376 SAMTools SNP 594775 594775 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold376 SAMTools SNP 594825 594825 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold377 SAMTools SNP 20338 20338 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold377 SAMTools SNP 20714 20714 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold377 SAMTools SNP 21075 21075 21.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold377 SAMTools SNP 21078 21078 21.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold377 SAMTools SNP 65226 65226 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 74260 74260 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C19%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C4.9e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold377 SAMTools SNP 75009 75009 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C2%3BMQ%3D43%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold377 SAMTools SNP 103219 103219 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C11%3BMQ%3D48%3BFQ%3D-8.63%3BPV4%3D0.15%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C19:22 scaffold377 SAMTools SNP 116490 116490 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold377 SAMTools SNP 116492 116492 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold377 SAMTools SNP 117558 117558 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D1%2C0.22%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C85:88 scaffold377 SAMTools SNP 118005 118005 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold377 SAMTools SNP 118085 118085 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 118588 118588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold377 SAMTools SNP 119100 119100 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0007%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C7.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold377 SAMTools SNP 119962 119962 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold377 SAMTools SNP 120020 120020 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C18%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.29%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold377 SAMTools SNP 120906 120906 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 121028 121028 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold377 SAMTools SNP 123377 123377 7.39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold377 SAMTools SNP 126499 126499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold377 SAMTools SNP 126909 126909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold377 SAMTools SNP 127049 127049 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C33%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 129745 129745 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.013%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold377 SAMTools SNP 130562 130562 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.00081%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold377 SAMTools SNP 130619 130619 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold377 SAMTools SNP 130625 130625 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold377 SAMTools SNP 130706 130706 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C54%2C0:75 scaffold377 SAMTools SNP 132227 132227 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.025%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold377 SAMTools SNP 132271 132271 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.082%2C0.026%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold377 SAMTools SNP 132280 132280 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold377 SAMTools SNP 133192 133192 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold377 SAMTools SNP 133991 133991 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C24%2C0:45 scaffold377 SAMTools SNP 134071 134071 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C63%2C73%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 134392 134392 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C38%2C22%2C22%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.11%2C3.4e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold377 SAMTools SNP 134477 134477 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C212:76 scaffold377 SAMTools SNP 134479 134479 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C116:99 scaffold377 SAMTools SNP 134515 134515 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 134774 134774 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 134856 134856 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 134858 134858 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold377 SAMTools SNP 136765 136765 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C4.8e-25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 138178 138178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold377 SAMTools SNP 138608 138608 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold377 SAMTools SNP 141329 141329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C40%2C35%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.053%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 141416 141416 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C83%2C29%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 146448 146448 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold377 SAMTools SNP 146760 146760 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold377 SAMTools SNP 155322 155322 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold377 SAMTools SNP 155611 155611 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold377 SAMTools SNP 167785 167785 14.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold377 SAMTools SNP 169091 169091 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold377 SAMTools SNP 171150 171150 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold377 SAMTools SNP 184554 184554 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 195307 195307 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 195946 195946 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 195957 195957 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 200501 200501 22.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold377 SAMTools SNP 200552 200552 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold377 SAMTools SNP 205304 205304 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 205497 205497 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold377 SAMTools SNP 210454 210454 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold377 SAMTools SNP 215019 215019 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold377 SAMTools SNP 217444 217444 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold377 SAMTools SNP 217482 217482 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 221729 221729 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold377 SAMTools SNP 222252 222252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.59%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold377 SAMTools SNP 222363 222363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold377 SAMTools SNP 222390 222390 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.18%2C0.067%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold377 SAMTools SNP 228007 228007 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold377 SAMTools SNP 228121 228121 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold377 SAMTools SNP 233999 233999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold377 SAMTools SNP 240208 240208 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold377 SAMTools SNP 240350 240350 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold377 SAMTools SNP 241229 241229 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold377 SAMTools SNP 241262 241262 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C104:99 scaffold377 SAMTools SNP 241271 241271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold377 SAMTools SNP 244575 244575 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C217:99 scaffold377 SAMTools SNP 246464 246464 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C6%3BMQ%3D40%3BFQ%3D16.1%3BPV4%3D0.15%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C126:46 scaffold377 SAMTools SNP 247827 247827 7.34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D23%3BFQ%3D-26%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C1:5 scaffold377 SAMTools SNP 250543 250543 65.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold377 SAMTools SNP 250754 250754 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold377 SAMTools SNP 251165 251165 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 251225 251225 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 308640 308640 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold377 SAMTools SNP 312828 312828 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold377 SAMTools SNP 313091 313091 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D0.17%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C32:35 scaffold377 SAMTools SNP 314710 314710 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold377 SAMTools SNP 315210 315210 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold377 SAMTools SNP 315243 315243 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C8.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold377 SAMTools SNP 315306 315306 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C157:98 scaffold377 SAMTools SNP 315345 315345 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold377 SAMTools SNP 317078 317078 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold377 SAMTools SNP 317096 317096 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 317099 317099 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 317568 317568 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold377 SAMTools SNP 317772 317772 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold377 SAMTools SNP 318188 318188 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 318246 318246 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 319933 319933 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 324009 324009 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold377 SAMTools SNP 324024 324024 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold377 SAMTools SNP 324292 324292 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold377 SAMTools SNP 324310 324310 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold377 SAMTools SNP 324492 324492 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold377 SAMTools SNP 324507 324507 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold377 SAMTools SNP 325552 325552 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 325555 325555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 325648 325648 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold377 SAMTools SNP 325980 325980 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold377 SAMTools SNP 326566 326566 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold377 SAMTools SNP 326605 326605 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold377 SAMTools SNP 326798 326798 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold377 SAMTools SNP 326843 326843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold377 SAMTools SNP 327425 327425 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C0.23%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold377 SAMTools SNP 327894 327894 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold377 SAMTools SNP 328327 328327 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold377 SAMTools SNP 328720 328720 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 329097 329097 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 329112 329112 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 332072 332072 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold377 SAMTools SNP 332093 332093 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold377 SAMTools SNP 332373 332373 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold377 SAMTools SNP 332404 332404 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold377 SAMTools SNP 333481 333481 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 333860 333860 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold377 SAMTools SNP 333914 333914 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold377 SAMTools SNP 334184 334184 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold377 SAMTools SNP 345101 345101 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C66:68 scaffold377 SAMTools SNP 352013 352013 54.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold377 SAMTools SNP 352135 352135 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.2%2C2.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C225:43 scaffold377 SAMTools SNP 352312 352312 66.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold377 SAMTools SNP 355803 355803 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold377 SAMTools SNP 360960 360960 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold377 SAMTools SNP 361089 361089 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.34%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold377 SAMTools SNP 363350 363350 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C5%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 363895 363895 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold377 SAMTools SNP 363928 363928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.34%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold377 SAMTools SNP 364426 364426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold377 SAMTools SNP 364476 364476 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold377 SAMTools SNP 364558 364558 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.0052%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold377 SAMTools SNP 364851 364851 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold377 SAMTools SNP 365850 365850 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold377 SAMTools SNP 366768 366768 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold377 SAMTools SNP 370704 370704 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.07%2C5.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold377 SAMTools SNP 371850 371850 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold377 SAMTools SNP 371904 371904 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 372446 372446 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold377 SAMTools SNP 372484 372484 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.029%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C223:99 scaffold377 SAMTools SNP 372504 372504 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.029%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C207:99 scaffold377 SAMTools SNP 373358 373358 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold377 SAMTools SNP 373386 373386 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold377 SAMTools SNP 373406 373406 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold377 SAMTools SNP 373730 373730 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold377 SAMTools SNP 374037 374037 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold377 SAMTools SNP 374050 374050 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold377 SAMTools SNP 374062 374062 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 374071 374071 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold377 SAMTools SNP 374807 374807 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold377 SAMTools SNP 374831 374831 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold377 SAMTools SNP 374936 374936 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold377 SAMTools SNP 376747 376747 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold377 SAMTools SNP 376775 376775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.61%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold377 SAMTools SNP 377091 377091 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold377 SAMTools SNP 377357 377357 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 378175 378175 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 378190 378190 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 378553 378553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 379028 379028 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold377 SAMTools SNP 379064 379064 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold377 SAMTools SNP 379070 379070 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold377 SAMTools SNP 379296 379296 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold377 SAMTools SNP 379820 379820 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold377 SAMTools SNP 379874 379874 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.0024%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C223:39 scaffold377 SAMTools SNP 380936 380936 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.21%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C182:99 scaffold377 SAMTools SNP 383747 383747 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold377 SAMTools SNP 383753 383753 164 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C47%2C32%2C190%2C0%2C187:27 scaffold377 SAMTools SNP 383774 383774 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold377 SAMTools SNP 384260 384260 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold377 SAMTools SNP 384280 384280 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold377 SAMTools SNP 384788 384788 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 384824 384824 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 384834 384834 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold377 SAMTools SNP 385208 385208 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold377 SAMTools SNP 385256 385256 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.3%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold377 SAMTools SNP 385423 385423 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold377 SAMTools SNP 387950 387950 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C185:99 scaffold377 SAMTools SNP 389637 389637 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold377 SAMTools SNP 389705 389705 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold377 SAMTools SNP 390058 390058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C30%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold377 SAMTools SNP 390124 390124 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C2%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.61%2C0.45%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold377 SAMTools SNP 390192 390192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold377 SAMTools SNP 390229 390229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C4%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold377 SAMTools SNP 391514 391514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C4%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold377 SAMTools SNP 393828 393828 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold377 SAMTools SNP 393834 393834 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold377 SAMTools SNP 393931 393931 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold377 SAMTools SNP 393962 393962 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold377 SAMTools SNP 396220 396220 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold377 SAMTools SNP 397774 397774 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold377 SAMTools SNP 399145 399145 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C196:72 scaffold377 SAMTools SNP 399151 399151 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D44%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C193:69 scaffold377 SAMTools SNP 399220 399220 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 399602 399602 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold377 SAMTools SNP 401126 401126 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold377 SAMTools SNP 407686 407686 13.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D25%3BFQ%3D-29%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C2%2C0:4 scaffold377 SAMTools SNP 408315 408315 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C2%2C33%3BMQ%3D47%3BFQ%3D-55%3BPV4%3D0.34%2C1.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C28%2C0:53 scaffold377 SAMTools SNP 408379 408379 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold377 SAMTools SNP 416142 416142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1365%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D680%2C210%2C262%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-09%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold377 SAMTools SNP 423336 423336 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C439%2C359%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold377 SAMTools SNP 423345 423345 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D856%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C84%2C74%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold377 SAMTools SNP 427175 427175 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold377 SAMTools SNP 427435 427435 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold377 SAMTools SNP 475230 475230 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C57%2C0:99 scaffold377 SAMTools SNP 475347 475347 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold377 SAMTools SNP 475366 475366 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold377 SAMTools SNP 475848 475848 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold377 SAMTools SNP 476460 476460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold377 SAMTools SNP 476503 476503 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 477874 477874 86.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold377 SAMTools SNP 483943 483943 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold377 SAMTools SNP 483963 483963 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold377 SAMTools SNP 484845 484845 44.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold377 SAMTools SNP 485371 485371 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 485776 485776 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C88:37 scaffold377 SAMTools SNP 485906 485906 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold377 SAMTools SNP 486159 486159 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold377 SAMTools SNP 488817 488817 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold377 SAMTools SNP 488964 488964 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 530337 530337 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 531241 531241 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold377 SAMTools SNP 531270 531270 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 531271 531271 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold377 SAMTools SNP 590358 590358 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C18%2C0:33 scaffold377 SAMTools SNP 592129 592129 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00022%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C35:38 scaffold378 SAMTools SNP 1087 1087 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C37%2C4%2C23%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C2.9e-09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 1176 1176 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C3%2C2%3BMQ%3D48%3BFQ%3D71%3BPV4%3D0.034%2C1%2C0.089%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold378 SAMTools SNP 1854 1854 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C11%3BMQ%3D41%3BFQ%3D100%3BPV4%3D1%2C1%2C0.15%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C234:99 scaffold378 SAMTools SNP 3584 3584 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D41%3BFQ%3D124%3BPV4%3D1%2C1%2C0.14%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C219:99 scaffold378 SAMTools SNP 3855 3855 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D39%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C63%2C0:99 scaffold378 SAMTools SNP 4785 4785 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C7%3BMQ%3D44%3BFQ%3D129%3BPV4%3D0.37%2C0.38%2C0.099%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold378 SAMTools SNP 4824 4824 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D46%3BFQ%3D6.99%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold378 SAMTools SNP 6186 6186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C15%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 6982 6982 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold378 SAMTools SNP 7018 7018 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold378 SAMTools SNP 7030 7030 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold378 SAMTools SNP 7119 7119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold378 SAMTools SNP 8080 8080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold378 SAMTools SNP 8137 8137 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 8146 8146 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 8564 8564 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 8582 8582 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold378 SAMTools SNP 8590 8590 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold378 SAMTools SNP 9543 9543 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C236:99 scaffold378 SAMTools SNP 9562 9562 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.17%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold378 SAMTools SNP 9568 9568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C8%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold378 SAMTools SNP 10474 10474 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C6%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 10798 10798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C141%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.36%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 10831 10831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 10925 10925 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C15:18 scaffold378 SAMTools SNP 10944 10944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold378 SAMTools SNP 10982 10982 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold378 SAMTools SNP 11929 11929 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold378 SAMTools SNP 14430 14430 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 14819 14819 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold378 SAMTools SNP 15858 15858 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold378 SAMTools SNP 15866 15866 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold378 SAMTools SNP 20111 20111 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold378 SAMTools SNP 20136 20136 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold378 SAMTools SNP 20404 20404 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 20941 20941 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold378 SAMTools SNP 21033 21033 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C11%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold378 SAMTools SNP 21079 21079 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C36%2C0:69 scaffold378 SAMTools SNP 21092 21092 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.17%2C1.2e-07%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold378 SAMTools SNP 21217 21217 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C18%2C85%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00017%2C2.6e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold378 SAMTools SNP 21615 21615 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D679%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C31%2C401%2C39%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.062%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold378 SAMTools SNP 21758 21758 32.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C17%2C5%2C60%2C0%2C57:21 scaffold378 SAMTools SNP 21879 21879 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold378 SAMTools SNP 21963 21963 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C88%2C9%2C134%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C3.1e-185%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold378 SAMTools SNP 22685 22685 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C127%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 22688 22688 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C12%2C37%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold378 SAMTools SNP 23189 23189 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold378 SAMTools SNP 23207 23207 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00085%2C8.3e-08%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold378 SAMTools SNP 23339 23339 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold378 SAMTools SNP 23665 23665 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.18%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C198:99 scaffold378 SAMTools SNP 23668 23668 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C246:99 scaffold378 SAMTools SNP 23677 23677 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.14%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C200:99 scaffold378 SAMTools SNP 23698 23698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold378 SAMTools SNP 23704 23704 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold378 SAMTools SNP 24468 24468 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold378 SAMTools SNP 24477 24477 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.48%2C0.16%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold378 SAMTools SNP 24492 24492 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold378 SAMTools SNP 24543 24543 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C234:63 scaffold378 SAMTools SNP 26200 26200 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold378 SAMTools SNP 26271 26271 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold378 SAMTools SNP 27258 27258 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 27320 27320 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold378 SAMTools SNP 27335 27335 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold378 SAMTools SNP 27695 27695 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold378 SAMTools SNP 27698 27698 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold378 SAMTools SNP 27711 27711 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold378 SAMTools SNP 27722 27722 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold378 SAMTools SNP 28068 28068 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C139:99 scaffold378 SAMTools SNP 29522 29522 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold378 SAMTools SNP 31008 31008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C49%2C26%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.39%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 32387 32387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C18%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.046%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 34760 34760 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 35833 35833 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 36584 36584 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D27%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.48%2C3.1e-06%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold378 SAMTools SNP 36741 36741 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 36801 36801 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.056%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold378 SAMTools SNP 36815 36815 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.009%2C3.9e-06%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold378 SAMTools SNP 36819 36819 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.021%2C0.0068%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C244:86 scaffold378 SAMTools SNP 37576 37576 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C18%2C0:33 scaffold378 SAMTools SNP 37910 37910 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold378 SAMTools SNP 37958 37958 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.13%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold378 SAMTools SNP 38532 38532 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold378 SAMTools SNP 38548 38548 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold378 SAMTools SNP 38554 38554 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 38570 38570 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 38930 38930 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold378 SAMTools SNP 38966 38966 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold378 SAMTools SNP 39023 39023 194 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C111%2C0%2C212%2C80%2C209:99 scaffold378 SAMTools SNP 39664 39664 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.46%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C244:99 scaffold378 SAMTools SNP 39682 39682 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C1%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold378 SAMTools SNP 39863 39863 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C22%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.32%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold378 SAMTools SNP 39920 39920 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold378 SAMTools SNP 39935 39935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.12%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold378 SAMTools SNP 39971 39971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C82%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold378 SAMTools SNP 40720 40720 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 41198 41198 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold378 SAMTools SNP 41277 41277 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C45%2C0:87 scaffold378 SAMTools SNP 41359 41359 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D69.2%3BPV4%3D0.018%2C0%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C104:99 scaffold378 SAMTools SNP 41364 41364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold378 SAMTools SNP 41794 41794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold378 SAMTools SNP 41953 41953 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C24%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C3.3e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 42376 42376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold378 SAMTools SNP 42388 42388 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C37%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold378 SAMTools SNP 42705 42705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold378 SAMTools SNP 42729 42729 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold378 SAMTools SNP 42760 42760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C21%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold378 SAMTools SNP 43042 43042 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C24%2C0:45 scaffold378 SAMTools SNP 43114 43114 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C78%2C0:99 scaffold378 SAMTools SNP 43159 43159 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold378 SAMTools SNP 43681 43681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold378 SAMTools SNP 43708 43708 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold378 SAMTools SNP 43790 43790 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C42%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 43796 43796 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C10%2C69%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 44007 44007 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C177%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 44095 44095 44.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold378 SAMTools SNP 44151 44151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold378 SAMTools SNP 44514 44514 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold378 SAMTools SNP 44566 44566 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C35:38 scaffold378 SAMTools SNP 44906 44906 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 45059 45059 34.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold378 SAMTools SNP 45265 45265 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold378 SAMTools SNP 45382 45382 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 45556 45556 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold378 SAMTools SNP 45610 45610 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C196:90 scaffold378 SAMTools SNP 45661 45661 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold378 SAMTools SNP 45706 45706 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 46173 46173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C18%2C25%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.073%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold378 SAMTools SNP 46185 46185 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C6%2C14%2C26%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold378 SAMTools SNP 49876 49876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C79%3BMQ%3D50%3BFQ%3D-272%3BPV4%3D0.23%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C245%2C0:99 scaffold378 SAMTools SNP 50198 50198 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 50312 50312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold378 SAMTools SNP 50333 50333 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C104%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0076%2C0.084%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 50366 50366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 50935 50935 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 51415 51415 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 51418 51418 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 51463 51463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 51956 51956 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold378 SAMTools SNP 51992 51992 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold378 SAMTools SNP 52419 52419 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C73%2C24%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.13%2C1%2C5.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 52918 52918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C65%2C32%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 53045 53045 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 53512 53512 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C2%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.25%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold378 SAMTools SNP 53773 53773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C46%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold378 SAMTools SNP 53797 53797 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C0%2C8%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.58%2C0.43%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold378 SAMTools SNP 53956 53956 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 53959 53959 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold378 SAMTools SNP 54086 54086 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold378 SAMTools SNP 54805 54805 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 54850 54850 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C184%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 54904 54904 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C51%2C27%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 55223 55223 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C46%2C1%2C19%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.51%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold378 SAMTools SNP 55502 55502 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold378 SAMTools SNP 55505 55505 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold378 SAMTools SNP 55514 55514 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold378 SAMTools SNP 55526 55526 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold378 SAMTools SNP 56024 56024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C80%2C9%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 56279 56279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold378 SAMTools SNP 56360 56360 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C4%2C28%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.014%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold378 SAMTools SNP 56366 56366 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold378 SAMTools SNP 56408 56408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C36%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold378 SAMTools SNP 56628 56628 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C12%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold378 SAMTools SNP 57147 57147 40.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold378 SAMTools SNP 57186 57186 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold378 SAMTools SNP 58819 58819 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 58824 58824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold378 SAMTools SNP 58834 58834 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 58887 58887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C55%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 60172 60172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C41%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold378 SAMTools SNP 60393 60393 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold378 SAMTools SNP 60415 60415 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold378 SAMTools SNP 61250 61250 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.49%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C232:34 scaffold378 SAMTools SNP 62656 62656 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold378 SAMTools SNP 62980 62980 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C49%2C1%2C11%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold378 SAMTools SNP 62981 62981 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C49%2C1%2C11%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold378 SAMTools SNP 63269 63269 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold378 SAMTools SNP 63943 63943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 64091 64091 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 64116 64116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 65687 65687 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C0%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.23%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 65948 65948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C4%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 66574 66574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C29%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 66583 66583 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C6%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.14%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold378 SAMTools SNP 66644 66644 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C18%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C241:99 scaffold378 SAMTools SNP 67926 67926 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C45%2C0:85 scaffold378 SAMTools SNP 68205 68205 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold378 SAMTools SNP 68229 68229 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 68482 68482 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold378 SAMTools SNP 68513 68513 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold378 SAMTools SNP 68606 68606 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold378 SAMTools SNP 68615 68615 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.4%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold378 SAMTools SNP 69354 69354 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold378 SAMTools SNP 72929 72929 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C6.3e-05%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold378 SAMTools SNP 74403 74403 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold378 SAMTools SNP 74457 74457 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold378 SAMTools SNP 75049 75049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold378 SAMTools SNP 75079 75079 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 75112 75112 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 79922 79922 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold378 SAMTools SNP 80219 80219 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 82616 82616 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold378 SAMTools SNP 84002 84002 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.035%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold378 SAMTools SNP 84029 84029 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold378 SAMTools SNP 84056 84056 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 84092 84092 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold378 SAMTools SNP 84127 84127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C5%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold378 SAMTools SNP 84831 84831 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C35%2C3%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.24%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold378 SAMTools SNP 84868 84868 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C41%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold378 SAMTools SNP 85059 85059 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C62%3BMQ%3D49%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold378 SAMTools SNP 85400 85400 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold378 SAMTools SNP 133903 133903 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold378 SAMTools SNP 133928 133928 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold378 SAMTools SNP 134504 134504 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C42%2C0:81 scaffold378 SAMTools SNP 134781 134781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 134836 134836 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.29%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold378 SAMTools SNP 176506 176506 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold378 SAMTools SNP 178929 178929 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold378 SAMTools SNP 178944 178944 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold378 SAMTools SNP 178954 178954 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold378 SAMTools SNP 178992 178992 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C99:40 scaffold378 SAMTools SNP 180858 180858 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold378 SAMTools SNP 180929 180929 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold378 SAMTools SNP 181068 181068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold378 SAMTools SNP 181080 181080 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold378 SAMTools SNP 182361 182361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold378 SAMTools SNP 182942 182942 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0017%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C110:48 scaffold378 SAMTools SNP 184356 184356 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold378 SAMTools SNP 184624 184624 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold378 SAMTools SNP 186737 186737 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C56%2C0%2C33%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.00033%2C1%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold378 SAMTools SNP 187084 187084 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold378 SAMTools SNP 187324 187324 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00072%2C0.48%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold378 SAMTools SNP 187370 187370 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0069%2C2.7e-07%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold378 SAMTools SNP 187479 187479 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C38%2C4%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.027%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold378 SAMTools SNP 187549 187549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C5%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 187993 187993 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold378 SAMTools SNP 188049 188049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C34%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold378 SAMTools SNP 191907 191907 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C78%2C0:99 scaffold378 SAMTools SNP 195597 195597 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.55%2C0.00036%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold378 SAMTools SNP 197433 197433 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold378 SAMTools SNP 198386 198386 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold378 SAMTools SNP 198391 198391 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold378 SAMTools SNP 199365 199365 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C30%2C0:57 scaffold378 SAMTools SNP 201362 201362 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D147%2C23%2C97%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 201382 201382 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C14%2C93%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 201598 201598 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C74%2C20%2C12%3BMQ%3D49%3BFQ%3D104%3BPV4%3D0.85%2C1%2C0.097%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold378 SAMTools SNP 201732 201732 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C116%2C144%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-18%2C1%2C1%2C2e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 203002 203002 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D324%2C71%2C215%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 203341 203341 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C27%2C92%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 203389 203389 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C58%2C99%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00026%2C0.4%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 205454 205454 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C3:6 scaffold378 SAMTools SNP 207058 207058 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold378 SAMTools SNP 207599 207599 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold378 SAMTools SNP 222563 222563 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C37%2C34%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 222616 222616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 222772 222772 26.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold378 SAMTools SNP 223018 223018 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold378 SAMTools SNP 226392 226392 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 226831 226831 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold378 SAMTools SNP 227324 227324 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C150:99 scaffold378 SAMTools SNP 227330 227330 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold378 SAMTools SNP 227422 227422 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold378 SAMTools SNP 231136 231136 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold378 SAMTools SNP 231184 231184 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold378 SAMTools SNP 237465 237465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold378 SAMTools SNP 237514 237514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold378 SAMTools SNP 238583 238583 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold378 SAMTools SNP 238817 238817 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 239515 239515 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C25:28 scaffold378 SAMTools SNP 239575 239575 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold378 SAMTools SNP 239685 239685 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold378 SAMTools SNP 239803 239803 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 240217 240217 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 240235 240235 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold378 SAMTools SNP 247135 247135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C54%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1.5e-34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 247549 247549 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.16%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold378 SAMTools SNP 248028 248028 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C54%2C42%2C19%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.43%2C6.9e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold378 SAMTools SNP 248353 248353 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold378 SAMTools SNP 248860 248860 3.55 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold378 SAMTools SNP 249192 249192 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C33%3BMQ%3D47%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold378 SAMTools SNP 249868 249868 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C48%2C12%2C42%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.085%2C1.6e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold378 SAMTools SNP 288372 288372 43.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold378 SAMTools SNP 295564 295564 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold378 SAMTools SNP 314803 314803 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold378 SAMTools SNP 324905 324905 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold378 SAMTools SNP 361785 361785 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold378 SAMTools SNP 362546 362546 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C98%2C40%2C107%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.4%2C2.2e-139%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold378 SAMTools SNP 362575 362575 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C55%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold378 SAMTools SNP 362840 362840 49.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold378 SAMTools SNP 370347 370347 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold378 SAMTools SNP 370356 370356 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold378 SAMTools SNP 370443 370443 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C29%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold378 SAMTools SNP 371647 371647 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold378 SAMTools SNP 371874 371874 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold378 SAMTools SNP 371881 371881 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 382825 382825 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.14%2C6.9e-14%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C240:86 scaffold378 SAMTools SNP 389442 389442 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold378 SAMTools SNP 389762 389762 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 389843 389843 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C16%2C20%2C2%3BMQ%3D49%3BFQ%3D109%3BPV4%3D0.22%2C9.9e-28%2C0.0058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold378 SAMTools SNP 389870 389870 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C14%2C21%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.6%2C9.5e-20%2C0.012%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 391845 391845 7.39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold378 SAMTools SNP 392413 392413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 392551 392551 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C69%2C21%2C76%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.32%2C2e-165%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold378 SAMTools SNP 393037 393037 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C14%2C114%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 393363 393363 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C51%2C16%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.45%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 393549 393549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C37%2C40%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 394790 394790 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold378 SAMTools SNP 394835 394835 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold378 SAMTools SNP 395422 395422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold378 SAMTools SNP 396352 396352 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold378 SAMTools SNP 397716 397716 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C0%2C46%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold378 SAMTools SNP 398171 398171 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C45%2C0:87 scaffold378 SAMTools SNP 398922 398922 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold378 SAMTools SNP 398969 398969 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.00061%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold378 SAMTools SNP 398972 398972 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.00061%2C0.035%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold378 SAMTools SNP 399753 399753 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C1%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold378 SAMTools SNP 399762 399762 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C22%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold378 SAMTools SNP 400152 400152 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C60%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 400179 400179 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold378 SAMTools SNP 400947 400947 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C47%2C36%2C61%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.88%2C2.1e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold378 SAMTools SNP 404302 404302 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold378 SAMTools SNP 404577 404577 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold378 SAMTools SNP 405164 405164 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold378 SAMTools SNP 406345 406345 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.15%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold378 SAMTools SNP 406973 406973 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold378 SAMTools SNP 407174 407174 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold378 SAMTools SNP 407235 407235 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold378 SAMTools SNP 408413 408413 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold378 SAMTools SNP 408757 408757 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold378 SAMTools SNP 410481 410481 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.15%2C0.086%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C239:98 scaffold378 SAMTools SNP 410536 410536 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold378 SAMTools SNP 410548 410548 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold378 SAMTools SNP 410812 410812 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.059%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold378 SAMTools SNP 410866 410866 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.032%2C1.8e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C248:77 scaffold378 SAMTools SNP 410947 410947 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C5%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.078%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold378 SAMTools SNP 411559 411559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 414404 414404 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold378 SAMTools SNP 414566 414566 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold378 SAMTools SNP 414612 414612 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold378 SAMTools SNP 415001 415001 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0119%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold378 SAMTools SNP 415556 415556 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C172:99 scaffold378 SAMTools SNP 416826 416826 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C142:99 scaffold378 SAMTools SNP 417446 417446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold378 SAMTools SNP 417987 417987 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold378 SAMTools SNP 418019 418019 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold378 SAMTools SNP 419570 419570 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold378 SAMTools SNP 419957 419957 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold378 SAMTools SNP 419972 419972 65.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C12%2C0:21 scaffold378 SAMTools SNP 421973 421973 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold378 SAMTools SNP 423678 423678 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold378 SAMTools SNP 424084 424084 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold378 SAMTools SNP 425207 425207 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold378 SAMTools SNP 428363 428363 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 428394 428394 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold378 SAMTools SNP 430287 430287 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold378 SAMTools SNP 430325 430325 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold378 SAMTools SNP 431441 431441 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold378 SAMTools SNP 432035 432035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 432062 432062 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C44%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 432083 432083 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C31%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 432242 432242 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C29%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 432264 432264 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold378 SAMTools SNP 432460 432460 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C28%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.099%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold378 SAMTools SNP 432785 432785 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C87:90 scaffold378 SAMTools SNP 433484 433484 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.00085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold378 SAMTools SNP 435576 435576 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C15%2C4%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.015%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold378 SAMTools SNP 440321 440321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 440477 440477 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold378 SAMTools SNP 463282 463282 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold378 SAMTools SNP 464308 464308 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold378 SAMTools SNP 464374 464374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold378 SAMTools SNP 472248 472248 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C30%2C0:57 scaffold378 SAMTools SNP 475456 475456 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold378 SAMTools SNP 475803 475803 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold378 SAMTools SNP 475832 475832 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold378 SAMTools SNP 476587 476587 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 476695 476695 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 479654 479654 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold378 SAMTools SNP 482587 482587 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C57%2C0:99 scaffold378 SAMTools SNP 482661 482661 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold378 SAMTools SNP 482683 482683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold378 SAMTools SNP 484366 484366 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C86:57 scaffold378 SAMTools SNP 484583 484583 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 486405 486405 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 486928 486928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold378 SAMTools SNP 486959 486959 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold378 SAMTools SNP 490794 490794 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold378 SAMTools SNP 490872 490872 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold378 SAMTools SNP 491024 491024 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold378 SAMTools SNP 505906 505906 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C0%2C8%3BMQ%3D49%3BFQ%3D77%3BPV4%3D0.034%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold378 SAMTools SNP 506258 506258 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold378 SAMTools SNP 506275 506275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold381 SAMTools SNP 1345 1345 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 1372 1372 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D43%3BFQ%3D63%3BPV4%3D1%2C0.00064%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C113:93 scaffold381 SAMTools SNP 1398 1398 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D42%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C211:33 scaffold381 SAMTools SNP 1428 1428 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C3%3BMQ%3D44%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold381 SAMTools SNP 3188 3188 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 3360 3360 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold381 SAMTools SNP 7073 7073 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D49%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C227:82 scaffold381 SAMTools SNP 7092 7092 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D47%3BFQ%3D43%3BPV4%3D1%2C1%2C0.085%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C176:73 scaffold381 SAMTools SNP 7100 7100 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold381 SAMTools SNP 7102 7102 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold381 SAMTools SNP 7137 7137 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 48695 48695 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C57%2C0:99 scaffold381 SAMTools SNP 49302 49302 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C38%2C40%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D3.2e-08%2C6.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold381 SAMTools SNP 49575 49575 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C91%2C0%2C56%3BMQ%3D50%3BFQ%3D90%3BPV4%3D9.9e-08%2C7.2e-23%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold381 SAMTools SNP 49578 49578 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C96%2C0%2C59%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1.2e-07%2C1.3e-20%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold381 SAMTools SNP 50198 50198 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C118%2C8%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0096%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 108518 108518 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 108543 108543 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold381 SAMTools SNP 111426 111426 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 111438 111438 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C57%2C0:99 scaffold381 SAMTools SNP 120251 120251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold381 SAMTools SNP 121220 121220 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C18%2C0:33 scaffold381 SAMTools SNP 121922 121922 41.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold381 SAMTools SNP 121976 121976 11.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-6.22%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C22:26 scaffold381 SAMTools SNP 121994 121994 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C78%2C0:99 scaffold381 SAMTools SNP 122015 122015 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C68%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C220%2C0:99 scaffold381 SAMTools SNP 122082 122082 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold381 SAMTools SNP 125574 125574 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold381 SAMTools SNP 125697 125697 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C96%2C0:99 scaffold381 SAMTools SNP 125811 125811 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D87%3BPV4%3D3.7e-06%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold381 SAMTools SNP 125826 125826 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C20%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 129432 129432 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C49%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0012%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold381 SAMTools SNP 129498 129498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 130107 130107 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 130773 130773 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold381 SAMTools SNP 133747 133747 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold381 SAMTools SNP 137617 137617 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold381 SAMTools SNP 137716 137716 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold381 SAMTools SNP 137740 137740 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold381 SAMTools SNP 138283 138283 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold381 SAMTools SNP 138298 138298 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.33%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold381 SAMTools SNP 139012 139012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C8.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 139048 139048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C10%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C2.7e-33%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 139213 139213 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C5%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C3.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold381 SAMTools SNP 139435 139435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold381 SAMTools SNP 140037 140037 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold381 SAMTools SNP 143423 143423 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold381 SAMTools SNP 143999 143999 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold381 SAMTools SNP 144011 144011 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold381 SAMTools SNP 144616 144616 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C46%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold381 SAMTools SNP 144892 144892 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C28%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C246:72 scaffold381 SAMTools SNP 145678 145678 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C32%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold381 SAMTools SNP 147065 147065 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C244:99 scaffold381 SAMTools SNP 147786 147786 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00012%2C0.14%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold381 SAMTools SNP 147804 147804 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C192:94 scaffold381 SAMTools SNP 147807 147807 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C91:94 scaffold381 SAMTools SNP 147822 147822 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold381 SAMTools SNP 147824 147824 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold381 SAMTools SNP 147918 147918 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.032%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold381 SAMTools SNP 147948 147948 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold381 SAMTools SNP 151840 151840 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold381 SAMTools SNP 151858 151858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold381 SAMTools SNP 151960 151960 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold381 SAMTools SNP 151993 151993 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold381 SAMTools SNP 152600 152600 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C24%2C0:45 scaffold381 SAMTools SNP 152648 152648 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C0.094%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C146:99 scaffold381 SAMTools SNP 152687 152687 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold381 SAMTools SNP 153972 153972 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold381 SAMTools SNP 153975 153975 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold381 SAMTools SNP 161600 161600 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 161739 161739 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 162665 162665 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 168752 168752 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold381 SAMTools SNP 169131 169131 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.088%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold381 SAMTools SNP 169149 169149 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0046%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold381 SAMTools SNP 175118 175118 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold381 SAMTools SNP 175149 175149 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold381 SAMTools SNP 178496 178496 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C18%2C0:33 scaffold381 SAMTools SNP 183171 183171 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold381 SAMTools SNP 183648 183648 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3864%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C248%2C1701%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold381 SAMTools SNP 183686 183686 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C71:41 scaffold381 SAMTools SNP 184231 184231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D586%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C172%2C85%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 184282 184282 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D920%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D328%2C114%2C381%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 185835 185835 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C60%2C67%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 187014 187014 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C184%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.28%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold381 SAMTools SNP 187025 187025 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C52%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold381 SAMTools SNP 193583 193583 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 193616 193616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold381 SAMTools SNP 195104 195104 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold381 SAMTools SNP 195170 195170 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0024%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold381 SAMTools SNP 197297 197297 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold381 SAMTools SNP 197361 197361 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold381 SAMTools SNP 198580 198580 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold381 SAMTools SNP 200547 200547 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold381 SAMTools SNP 200620 200620 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 200812 200812 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold381 SAMTools SNP 201096 201096 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold381 SAMTools SNP 201218 201218 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold381 SAMTools SNP 202040 202040 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 202510 202510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold381 SAMTools SNP 202813 202813 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold381 SAMTools SNP 202841 202841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold381 SAMTools SNP 203601 203601 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 204437 204437 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 204450 204450 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 204643 204643 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold381 SAMTools SNP 204670 204670 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D48%3BFQ%3D70%3BPV4%3D1%2C1%2C0.083%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C199:99 scaffold381 SAMTools SNP 204715 204715 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C3%3BMQ%3D48%3BFQ%3D125%3BPV4%3D0.56%2C0.37%2C0.13%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C238:99 scaffold381 SAMTools SNP 205590 205590 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C4%3BMQ%3D46%3BFQ%3D123%3BPV4%3D0.63%2C0.16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold381 SAMTools SNP 205608 205608 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D45%3BFQ%3D19.1%3BPV4%3D1%2C0.1%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C174:49 scaffold381 SAMTools SNP 205844 205844 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold381 SAMTools SNP 256968 256968 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold381 SAMTools SNP 344422 344422 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold381 SAMTools SNP 373810 373810 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C45%2C0:87 scaffold381 SAMTools SNP 374843 374843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 375619 375619 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold381 SAMTools SNP 375634 375634 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold381 SAMTools SNP 375778 375778 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 375781 375781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 375793 375793 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 375814 375814 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 390899 390899 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D7.98%3BPV4%3D1%2C0.00059%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold381 SAMTools SNP 391125 391125 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold381 SAMTools SNP 397395 397395 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold381 SAMTools SNP 397608 397608 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold381 SAMTools SNP 403338 403338 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C235:99 scaffold381 SAMTools SNP 403370 403370 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C231:66 scaffold381 SAMTools SNP 403445 403445 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold381 SAMTools SNP 403538 403538 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C5%2C17%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.13%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold381 SAMTools SNP 412354 412354 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.24%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold381 SAMTools SNP 412384 412384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold381 SAMTools SNP 412787 412787 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold381 SAMTools SNP 412827 412827 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold381 SAMTools SNP 413147 413147 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 413192 413192 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold381 SAMTools SNP 413560 413560 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold381 SAMTools SNP 413951 413951 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C49%2C5%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 413987 413987 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold381 SAMTools SNP 414006 414006 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0093%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold381 SAMTools SNP 415278 415278 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 415422 415422 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold381 SAMTools SNP 416070 416070 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 416101 416101 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 416239 416239 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold381 SAMTools SNP 416549 416549 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold381 SAMTools SNP 416578 416578 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold381 SAMTools SNP 417091 417091 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C60%2C5%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold381 SAMTools SNP 417154 417154 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C47%2C70%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.6e-99%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 417214 417214 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold381 SAMTools SNP 419376 419376 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold381 SAMTools SNP 420260 420260 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 423758 423758 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold381 SAMTools SNP 424206 424206 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold381 SAMTools SNP 424221 424221 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 424276 424276 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 424278 424278 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold381 SAMTools SNP 425022 425022 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 430911 430911 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold381 SAMTools SNP 430931 430931 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.63%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold381 SAMTools SNP 430960 430960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold381 SAMTools SNP 434329 434329 45.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold381 SAMTools SNP 444983 444983 45.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.07%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C15:18 scaffold381 SAMTools SNP 445159 445159 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold381 SAMTools SNP 457520 457520 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold381 SAMTools SNP 459010 459010 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.0015%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold381 SAMTools SNP 459034 459034 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.062%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C246:99 scaffold381 SAMTools SNP 459898 459898 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold381 SAMTools SNP 460294 460294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold381 SAMTools SNP 461717 461717 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 461765 461765 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 462069 462069 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold381 SAMTools SNP 462092 462092 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold381 SAMTools SNP 462988 462988 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00061%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold381 SAMTools SNP 463386 463386 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold381 SAMTools SNP 464770 464770 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold381 SAMTools SNP 464863 464863 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.00036%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold381 SAMTools SNP 465969 465969 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold381 SAMTools SNP 466028 466028 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 479886 479886 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold381 SAMTools SNP 480377 480377 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold381 SAMTools SNP 481785 481785 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold381 SAMTools SNP 496337 496337 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold381 SAMTools SNP 502218 502218 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 502964 502964 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C8%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.47%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold381 SAMTools SNP 503971 503971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold381 SAMTools SNP 504085 504085 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold381 SAMTools SNP 504504 504504 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C234:99 scaffold381 SAMTools SNP 505189 505189 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold381 SAMTools SNP 505228 505228 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 505232 505232 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold381 SAMTools SNP 505233 505233 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold381 SAMTools SNP 505261 505261 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.16%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C217:99 scaffold381 SAMTools SNP 508159 508159 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C2%2C3%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D0.075%2C0.00067%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold381 SAMTools SNP 509130 509130 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold381 SAMTools SNP 509140 509140 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold381 SAMTools SNP 509555 509555 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold381 SAMTools SNP 509585 509585 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 509594 509594 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold381 SAMTools SNP 509898 509898 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold381 SAMTools SNP 510044 510044 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold381 SAMTools SNP 510071 510071 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C0.011%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold382 SAMTools SNP 29719 29719 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold382 SAMTools SNP 55026 55026 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.35%2C0.38%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold382 SAMTools SNP 56356 56356 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold382 SAMTools SNP 90005 90005 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D21%3BPV4%3D2.5e-09%2C1.4e-50%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold382 SAMTools SNP 90351 90351 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold382 SAMTools SNP 90632 90632 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold382 SAMTools SNP 92269 92269 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold382 SAMTools SNP 92289 92289 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 5788 5788 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 5791 5791 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 5926 5926 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 33623 33623 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold383 SAMTools SNP 42294 42294 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 42392 42392 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold383 SAMTools SNP 42643 42643 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C18%2C0:33 scaffold383 SAMTools SNP 43569 43569 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold383 SAMTools SNP 43600 43600 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 44729 44729 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C1.6e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C26:29 scaffold383 SAMTools SNP 62870 62870 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold383 SAMTools SNP 80874 80874 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C59%2C3%2C13%3BMQ%3D43%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold383 SAMTools SNP 88835 88835 51.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold383 SAMTools SNP 92182 92182 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.00089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold383 SAMTools SNP 92581 92581 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold383 SAMTools SNP 95187 95187 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.19%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold383 SAMTools SNP 95325 95325 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold383 SAMTools SNP 95334 95334 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold383 SAMTools SNP 95932 95932 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.33%2C1%2C0.089%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C127:39 scaffold383 SAMTools SNP 96596 96596 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 100762 100762 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C65:68 scaffold383 SAMTools SNP 102085 102085 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C235:48 scaffold383 SAMTools SNP 106029 106029 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 106086 106086 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold383 SAMTools SNP 108046 108046 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold383 SAMTools SNP 108994 108994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 109006 109006 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 109566 109566 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold383 SAMTools SNP 109587 109587 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold383 SAMTools SNP 109632 109632 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C104:39 scaffold383 SAMTools SNP 109713 109713 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C21%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.022%2C7.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C177:99 scaffold383 SAMTools SNP 109731 109731 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold383 SAMTools SNP 109894 109894 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 109905 109905 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C71:74 scaffold383 SAMTools SNP 109914 109914 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 110302 110302 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold383 SAMTools SNP 110305 110305 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.27%2C0.12%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold383 SAMTools SNP 110317 110317 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold383 SAMTools SNP 110619 110619 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C21%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.32%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold383 SAMTools SNP 110632 110632 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 110676 110676 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold383 SAMTools SNP 110804 110804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold383 SAMTools SNP 110870 110870 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold383 SAMTools SNP 111230 111230 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C0%2C17%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold383 SAMTools SNP 112170 112170 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 112177 112177 38.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C24%2C69%2C0%2C66:10 scaffold383 SAMTools SNP 112230 112230 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold383 SAMTools SNP 112284 112284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold383 SAMTools SNP 112532 112532 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold383 SAMTools SNP 112604 112604 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 113890 113890 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold383 SAMTools SNP 114244 114244 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold383 SAMTools SNP 114262 114262 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold383 SAMTools SNP 114325 114325 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold383 SAMTools SNP 114765 114765 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C21%3BMQ%3D50%3BFQ%3D-65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C38%2C0:73 scaffold383 SAMTools SNP 115006 115006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold383 SAMTools SNP 115063 115063 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold383 SAMTools SNP 115524 115524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold383 SAMTools SNP 116382 116382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold383 SAMTools SNP 116393 116393 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold383 SAMTools SNP 116459 116459 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C18%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C3.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C236:99 scaffold383 SAMTools SNP 116489 116489 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 116603 116603 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 116610 116610 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 116978 116978 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.23%2C0.0057%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C173:99 scaffold383 SAMTools SNP 118561 118561 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold383 SAMTools SNP 118992 118992 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 118999 118999 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 119507 119507 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold383 SAMTools SNP 119540 119540 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold383 SAMTools SNP 124408 124408 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C4%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 124504 124504 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.63%2C2.2e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold383 SAMTools SNP 126349 126349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C13%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.62%2C0.11%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold383 SAMTools SNP 126397 126397 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold383 SAMTools SNP 128810 128810 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C0%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 128873 128873 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 128900 128900 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 138585 138585 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold383 SAMTools SNP 138611 138611 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.14%2C0.45%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C128:98 scaffold383 SAMTools SNP 139036 139036 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold383 SAMTools SNP 139071 139071 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C124:99 scaffold383 SAMTools SNP 139891 139891 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 140471 140471 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold383 SAMTools SNP 140478 140478 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.37%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold383 SAMTools SNP 140699 140699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold383 SAMTools SNP 143419 143419 75.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold383 SAMTools SNP 143630 143630 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C30%2C0:55 scaffold383 SAMTools SNP 149878 149878 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold383 SAMTools SNP 149924 149924 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.37%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold383 SAMTools SNP 154706 154706 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C9%2C8%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 154728 154728 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C0%2C15%3BMQ%3D46%3BFQ%3D146%3BPV4%3D0.00021%2C1%2C0.0062%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold383 SAMTools SNP 155266 155266 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C25%3BMQ%3D45%3BFQ%3D177%3BPV4%3D1.1e-06%2C0.25%2C0.00016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold383 SAMTools SNP 155546 155546 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C1%2C13%3BMQ%3D47%3BFQ%3D170%3BPV4%3D0.072%2C1%2C8.1e-05%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold383 SAMTools SNP 155610 155610 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold383 SAMTools SNP 155645 155645 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold383 SAMTools SNP 155661 155661 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold383 SAMTools SNP 155662 155662 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold383 SAMTools SNP 156059 156059 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C4%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold383 SAMTools SNP 156221 156221 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C28%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold383 SAMTools SNP 156622 156622 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold383 SAMTools SNP 157153 157153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold383 SAMTools SNP 157195 157195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C45%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold383 SAMTools SNP 157706 157706 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold383 SAMTools SNP 157712 157712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold383 SAMTools SNP 158140 158140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold383 SAMTools SNP 158181 158181 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0022%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold383 SAMTools SNP 160484 160484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold383 SAMTools SNP 160508 160508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold383 SAMTools SNP 160514 160514 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 160547 160547 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C3%3BMQ%3D48%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold383 SAMTools SNP 160586 160586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C37%2C3%3BMQ%3D49%3BFQ%3D211%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold383 SAMTools SNP 161099 161099 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 175857 175857 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D48%3BFQ%3D101%3BPV4%3D1%2C0.088%2C0.24%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C128:99 scaffold383 SAMTools SNP 177409 177409 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C181%2C0:99 scaffold383 SAMTools SNP 188933 188933 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C92%3BMQ%3D14%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C255%2C0:99 scaffold383 SAMTools SNP 189112 189112 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C4%2C3%3BMQ%3D34%3BFQ%3D39%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C198:69 scaffold383 SAMTools SNP 189435 189435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 197014 197014 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C210%2C2%2C56%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold383 SAMTools SNP 197172 197172 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C88%2C1%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 200388 200388 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 201538 201538 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold383 SAMTools SNP 201594 201594 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 202743 202743 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 202794 202794 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold383 SAMTools SNP 213832 213832 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.00054%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold383 SAMTools SNP 213937 213937 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C48%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold383 SAMTools SNP 214762 214762 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold383 SAMTools SNP 214784 214784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold383 SAMTools SNP 215252 215252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 215264 215264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 215282 215282 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.12%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold383 SAMTools SNP 215647 215647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold383 SAMTools SNP 215695 215695 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold383 SAMTools SNP 215819 215819 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C109:51 scaffold383 SAMTools SNP 215830 215830 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold383 SAMTools SNP 216546 216546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold383 SAMTools SNP 216794 216794 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold383 SAMTools SNP 218385 218385 40.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold383 SAMTools SNP 218424 218424 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.086%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold383 SAMTools SNP 218789 218789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold383 SAMTools SNP 218825 218825 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C0.045%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold383 SAMTools SNP 219074 219074 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.062%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold383 SAMTools SNP 219150 219150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 219497 219497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold383 SAMTools SNP 219500 219500 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 219702 219702 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 219896 219896 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold383 SAMTools SNP 220149 220149 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold383 SAMTools SNP 220176 220176 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold383 SAMTools SNP 220266 220266 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold383 SAMTools SNP 221939 221939 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C126:93 scaffold383 SAMTools SNP 222955 222955 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold383 SAMTools SNP 223265 223265 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold383 SAMTools SNP 224862 224862 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C2%2C70%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.68%2C1.7e-145%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold383 SAMTools SNP 229257 229257 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold383 SAMTools SNP 229305 229305 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 229844 229844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 232978 232978 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C2%2C7%3BMQ%3D48%3BFQ%3D179%3BPV4%3D1%2C0.45%2C0.014%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold383 SAMTools SNP 233605 233605 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C2%2C7%3BMQ%3D49%3BFQ%3D147%3BPV4%3D0.43%2C0.097%2C0.0054%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold383 SAMTools SNP 233617 233617 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C19%2C17%3BMQ%3D49%3BFQ%3D74%3BPV4%3D0.1%2C0.084%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold383 SAMTools SNP 235022 235022 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold383 SAMTools SNP 235791 235791 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold383 SAMTools SNP 235832 235832 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C190:99 scaffold383 SAMTools SNP 235869 235869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold383 SAMTools SNP 237085 237085 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold383 SAMTools SNP 237445 237445 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 237812 237812 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C4%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 239458 239458 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 240679 240679 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold383 SAMTools SNP 240802 240802 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C95%2C3%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 241149 241149 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold383 SAMTools SNP 241914 241914 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C20%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold383 SAMTools SNP 245492 245492 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold383 SAMTools SNP 245548 245548 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.088%2C4.6e-08%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold383 SAMTools SNP 245593 245593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold383 SAMTools SNP 245709 245709 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C14%2C10%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.61%2C1.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold383 SAMTools SNP 270238 270238 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 270265 270265 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold383 SAMTools SNP 270989 270989 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold383 SAMTools SNP 276101 276101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1058%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold383 SAMTools SNP 276128 276128 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D575%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C95%2C2%3BMQ%3D50%3BFQ%3D-232%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold383 SAMTools SNP 282604 282604 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold383 SAMTools SNP 282710 282710 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold383 SAMTools SNP 283469 283469 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1324%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1246%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold383 SAMTools SNP 283489 283489 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D577%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C300%2C0%2C194%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1.3e-16%2C1%2C1%2C1.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold383 SAMTools SNP 283958 283958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold383 SAMTools SNP 284843 284843 39.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold383 SAMTools SNP 286478 286478 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C30%2C0:55 scaffold383 SAMTools SNP 287013 287013 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C39%2C0:70 scaffold383 SAMTools SNP 292382 292382 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold383 SAMTools SNP 295043 295043 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold383 SAMTools SNP 295069 295069 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold383 SAMTools SNP 296519 296519 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold383 SAMTools SNP 296570 296570 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold383 SAMTools SNP 297329 297329 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.47%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold383 SAMTools SNP 297353 297353 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold383 SAMTools SNP 297905 297905 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold383 SAMTools SNP 297944 297944 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold383 SAMTools SNP 298642 298642 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold383 SAMTools SNP 298657 298657 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C160:68 scaffold383 SAMTools SNP 298921 298921 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold383 SAMTools SNP 299419 299419 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold383 SAMTools SNP 301618 301618 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C169:99 scaffold383 SAMTools SNP 302047 302047 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold383 SAMTools SNP 302093 302093 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold383 SAMTools SNP 307828 307828 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 316671 316671 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 316976 316976 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold383 SAMTools SNP 317265 317265 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C17%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 317567 317567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C23%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold383 SAMTools SNP 318375 318375 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C28%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C120%2C0:99 scaffold383 SAMTools SNP 320180 320180 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold383 SAMTools SNP 320556 320556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold383 SAMTools SNP 320569 320569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold383 SAMTools SNP 325152 325152 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold383 SAMTools SNP 325179 325179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 325745 325745 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 326316 326316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C51%2C8%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 327037 327037 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 329047 329047 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 329949 329949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold383 SAMTools SNP 330211 330211 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold383 SAMTools SNP 339245 339245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold383 SAMTools SNP 340580 340580 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 342145 342145 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C30%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D3.4e-05%2C1.4e-12%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold383 SAMTools SNP 342168 342168 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.16%2C8.3e-08%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold383 SAMTools SNP 343736 343736 71.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold383 SAMTools SNP 349593 349593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C88%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold383 SAMTools SNP 350001 350001 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold383 SAMTools SNP 350294 350294 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.088%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold383 SAMTools SNP 350646 350646 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold383 SAMTools SNP 351536 351536 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C70%2C2%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0065%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold383 SAMTools SNP 351539 351539 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C69%2C2%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.6%2C0.0083%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold383 SAMTools SNP 353023 353023 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold383 SAMTools SNP 353064 353064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C9%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 353854 353854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C4%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 354091 354091 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold383 SAMTools SNP 355371 355371 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C72%2C0:99 scaffold383 SAMTools SNP 361677 361677 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold383 SAMTools SNP 362310 362310 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold383 SAMTools SNP 364805 364805 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold383 SAMTools SNP 365527 365527 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold383 SAMTools SNP 365583 365583 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.49%2C0.018%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold383 SAMTools SNP 365907 365907 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold383 SAMTools SNP 368303 368303 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C5%2C33%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.3%2C2.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold383 SAMTools SNP 374515 374515 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold383 SAMTools SNP 375394 375394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold383 SAMTools SNP 375960 375960 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1.8e-05%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C32:35 scaffold383 SAMTools SNP 376303 376303 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 376311 376311 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 376335 376335 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold383 SAMTools SNP 379157 379157 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 386857 386857 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold383 SAMTools SNP 386890 386890 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.34%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold383 SAMTools SNP 387274 387274 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold383 SAMTools SNP 387291 387291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold383 SAMTools SNP 387329 387329 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold383 SAMTools SNP 387356 387356 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 398314 398314 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C38:41 scaffold383 SAMTools SNP 398620 398620 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 403423 403423 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold383 SAMTools SNP 403840 403840 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold383 SAMTools SNP 403861 403861 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold383 SAMTools SNP 441037 441037 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold383 SAMTools SNP 458443 458443 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 470597 470597 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 470616 470616 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 470639 470639 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 487708 487708 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C36%2C0:69 scaffold383 SAMTools SNP 487771 487771 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold383 SAMTools SNP 487896 487896 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0:45 scaffold383 SAMTools SNP 491462 491462 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 516298 516298 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold383 SAMTools SNP 540021 540021 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold383 SAMTools SNP 544654 544654 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C19%2C77%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0067%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold383 SAMTools SNP 559882 559882 48.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold383 SAMTools SNP 561001 561001 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D0.43%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold383 SAMTools SNP 561365 561365 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold383 SAMTools SNP 561554 561554 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold383 SAMTools SNP 561572 561572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C20%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 562027 562027 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 562041 562041 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C64%2C0%2C19%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.57%2C2.3e-09%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold383 SAMTools SNP 562679 562679 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold383 SAMTools SNP 563156 563156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C42%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.088%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold383 SAMTools SNP 563174 563174 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C27%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C248:99 scaffold383 SAMTools SNP 563617 563617 17.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C37%2C34%2C47%2C0%2C44:6 scaffold383 SAMTools SNP 563644 563644 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 563648 563648 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold383 SAMTools SNP 564086 564086 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00058%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold383 SAMTools SNP 564104 564104 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold383 SAMTools SNP 564124 564124 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C18%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0087%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold383 SAMTools SNP 564428 564428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold383 SAMTools SNP 564709 564709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 565318 565318 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C29:32 scaffold383 SAMTools SNP 565560 565560 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C45%2C0:77 scaffold383 SAMTools SNP 565627 565627 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.25%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold383 SAMTools SNP 566168 566168 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 566169 566169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 566994 566994 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C240:99 scaffold383 SAMTools SNP 619619 619619 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 632757 632757 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C202:99 scaffold383 SAMTools SNP 638493 638493 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold383 SAMTools SNP 649596 649596 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold383 SAMTools SNP 650170 650170 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C20%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.094%2C1%2C0.063%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold383 SAMTools SNP 650173 650173 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C20%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.42%2C0.23%2C0.072%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold383 SAMTools SNP 663945 663945 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.01%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 664042 664042 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C6%2C19%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.44%2C7.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold383 SAMTools SNP 664962 664962 116 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C87%2C0%2C146%2C70%2C143:99 scaffold383 SAMTools SNP 665079 665079 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C75%2C0:99 scaffold383 SAMTools SNP 665218 665218 48 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C154%2C0:99 scaffold383 SAMTools SNP 665248 665248 97 . . REF=G;ALT=A,C,T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C25%2C1%2C125%2C3%2C119%2C116%2C0%2C105%2C113:45 scaffold383 SAMTools SNP 665391 665391 186 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C135%2C0%2C217%2C117%2C214:99 scaffold383 SAMTools SNP 665418 665418 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C57%2C0:99 scaffold383 SAMTools SNP 665589 665589 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold383 SAMTools SNP 666291 666291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C16%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold383 SAMTools SNP 666312 666312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C25%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 671882 671882 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold383 SAMTools SNP 676161 676161 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 676233 676233 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold383 SAMTools SNP 677369 677369 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C51%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C160%2C0:99 scaffold383 SAMTools SNP 677528 677528 60.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold383 SAMTools SNP 677921 677921 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold383 SAMTools SNP 677981 677981 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C66:69 scaffold383 SAMTools SNP 678608 678608 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C10%2C96%2C4%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.16%2C5.3e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold383 SAMTools SNP 678872 678872 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C215:99 scaffold383 SAMTools SNP 698067 698067 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold383 SAMTools SNP 708019 708019 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold383 SAMTools SNP 708037 708037 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold383 SAMTools SNP 709378 709378 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 710244 710244 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.25%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold383 SAMTools SNP 710248 710248 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C17%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.19%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C118:99 scaffold383 SAMTools SNP 710760 710760 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 711182 711182 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C232:46 scaffold383 SAMTools SNP 711188 711188 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C232:46 scaffold383 SAMTools SNP 711535 711535 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 711536 711536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 711616 711616 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold383 SAMTools SNP 711661 711661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 711685 711685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold383 SAMTools SNP 712584 712584 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold383 SAMTools SNP 712596 712596 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold383 SAMTools SNP 712987 712987 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold383 SAMTools SNP 713005 713005 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C112:58 scaffold383 SAMTools SNP 713294 713294 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C32:35 scaffold383 SAMTools SNP 713345 713345 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold383 SAMTools SNP 713700 713700 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold383 SAMTools SNP 715046 715046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold383 SAMTools SNP 715840 715840 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C33%2C0:62 scaffold383 SAMTools SNP 716088 716088 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C20%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.5e-55%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C252:48 scaffold383 SAMTools SNP 716106 716106 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold383 SAMTools SNP 716152 716152 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C18%2C0:33 scaffold383 SAMTools SNP 716885 716885 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C123%2C0:99 scaffold383 SAMTools SNP 721298 721298 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold383 SAMTools SNP 721316 721316 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold383 SAMTools SNP 722406 722406 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold383 SAMTools SNP 723146 723146 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 723380 723380 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold383 SAMTools SNP 723421 723421 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold383 SAMTools SNP 723535 723535 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 730555 730555 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold383 SAMTools SNP 732231 732231 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 733297 733297 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold383 SAMTools SNP 733668 733668 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold383 SAMTools SNP 734336 734336 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold383 SAMTools SNP 734397 734397 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold383 SAMTools SNP 734843 734843 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold383 SAMTools SNP 735592 735592 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold383 SAMTools SNP 747658 747658 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold383 SAMTools SNP 754096 754096 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold383 SAMTools SNP 757003 757003 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold383 SAMTools SNP 757264 757264 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold383 SAMTools SNP 757307 757307 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C223:99 scaffold383 SAMTools SNP 757610 757610 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold383 SAMTools SNP 791462 791462 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold383 SAMTools SNP 844726 844726 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C138:40 scaffold383 SAMTools SNP 845164 845164 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold383 SAMTools SNP 850925 850925 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold385 SAMTools SNP 2199 2199 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 45074 45074 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold385 SAMTools SNP 49105 49105 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold385 SAMTools SNP 52226 52226 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold385 SAMTools SNP 67761 67761 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 67818 67818 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 129657 129657 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 129674 129674 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 137213 137213 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold385 SAMTools SNP 138492 138492 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold385 SAMTools SNP 138742 138742 18.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold385 SAMTools SNP 139944 139944 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold385 SAMTools SNP 141392 141392 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold385 SAMTools SNP 144904 144904 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C1%2C9%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.39%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold385 SAMTools SNP 145549 145549 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.28%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold385 SAMTools SNP 145873 145873 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.33%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold385 SAMTools SNP 145885 145885 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold385 SAMTools SNP 147165 147165 90 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.6%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold385 SAMTools SNP 147829 147829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C6%2C60%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold385 SAMTools SNP 234221 234221 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold385 SAMTools SNP 275288 275288 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold385 SAMTools SNP 275871 275871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 53559 53559 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 53701 53701 99.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C21%2C0:39 scaffold386 SAMTools SNP 75176 75176 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold386 SAMTools SNP 75216 75216 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold386 SAMTools SNP 78120 78120 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C15%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.7%2C9.2e-36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold386 SAMTools SNP 78144 78144 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C5%2C13%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C6.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold386 SAMTools SNP 78305 78305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold386 SAMTools SNP 80200 80200 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold386 SAMTools SNP 80203 80203 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold386 SAMTools SNP 86228 86228 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.015%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C216:57 scaffold386 SAMTools SNP 98587 98587 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 102489 102489 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold386 SAMTools SNP 102490 102490 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold386 SAMTools SNP 102537 102537 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 102542 102542 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 102610 102610 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C69:71 scaffold386 SAMTools SNP 104837 104837 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold386 SAMTools SNP 109764 109764 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold386 SAMTools SNP 114874 114874 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2826%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C513%2C550%2C320%3BMQ%3D31%3BFQ%3D-83%3BPV4%3D8.4e-142%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C0:99 scaffold386 SAMTools SNP 115740 115740 44.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold386 SAMTools SNP 120776 120776 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold386 SAMTools SNP 120836 120836 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C216:99 scaffold386 SAMTools SNP 121365 121365 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold386 SAMTools SNP 121392 121392 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C234:99 scaffold386 SAMTools SNP 121422 121422 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C157:74 scaffold386 SAMTools SNP 121425 121425 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C71:74 scaffold386 SAMTools SNP 121446 121446 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold386 SAMTools SNP 122214 122214 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold386 SAMTools SNP 122223 122223 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold386 SAMTools SNP 122253 122253 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 123525 123525 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold386 SAMTools SNP 123783 123783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold386 SAMTools SNP 124087 124087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold386 SAMTools SNP 124582 124582 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.11%2C0.18%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold386 SAMTools SNP 124594 124594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 124690 124690 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 125118 125118 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold386 SAMTools SNP 125148 125148 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0025%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold386 SAMTools SNP 126138 126138 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold386 SAMTools SNP 136991 136991 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C36%2C0:69 scaffold386 SAMTools SNP 137031 137031 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.3%2C8.2e-11%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold386 SAMTools SNP 138470 138470 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.35%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold386 SAMTools SNP 138500 138500 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold386 SAMTools SNP 152881 152881 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 169407 169407 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold386 SAMTools SNP 170378 170378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C33%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold386 SAMTools SNP 170426 170426 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold386 SAMTools SNP 171364 171364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold386 SAMTools SNP 171373 171373 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C17%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.45%2C0.0042%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold386 SAMTools SNP 171403 171403 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C23%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.49%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold386 SAMTools SNP 172637 172637 44.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold386 SAMTools SNP 173125 173125 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold386 SAMTools SNP 173381 173381 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold386 SAMTools SNP 181580 181580 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold386 SAMTools SNP 181589 181589 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C1%2C14%2C10%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C0.48%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold386 SAMTools SNP 184965 184965 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold386 SAMTools SNP 184988 184988 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold386 SAMTools SNP 198022 198022 30.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold386 SAMTools SNP 215910 215910 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 216277 216277 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D1%2C0.0087%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C160:28 scaffold386 SAMTools SNP 268959 268959 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold386 SAMTools SNP 270937 270937 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold386 SAMTools SNP 276039 276039 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold386 SAMTools SNP 276040 276040 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold386 SAMTools SNP 276045 276045 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C66:52 scaffold386 SAMTools SNP 276083 276083 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold386 SAMTools SNP 277783 277783 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 277786 277786 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 278509 278509 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 278522 278522 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 278580 278580 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold386 SAMTools SNP 278594 278594 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold386 SAMTools SNP 280763 280763 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold386 SAMTools SNP 284661 284661 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold386 SAMTools SNP 284683 284683 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold386 SAMTools SNP 284704 284704 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold386 SAMTools SNP 285183 285183 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C62%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold386 SAMTools SNP 286876 286876 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.66%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold386 SAMTools SNP 286948 286948 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 287532 287532 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C36%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C61%2C0:99 scaffold386 SAMTools SNP 287631 287631 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold386 SAMTools SNP 289421 289421 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C9e-15%2C1%2C5.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C248:89 scaffold386 SAMTools SNP 289459 289459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold386 SAMTools SNP 289583 289583 16.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1.2e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C8:11 scaffold386 SAMTools SNP 289619 289619 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C42%2C0:80 scaffold386 SAMTools SNP 289663 289663 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C54%2C0:99 scaffold386 SAMTools SNP 292584 292584 34.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold386 SAMTools SNP 292855 292855 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C60%2C0:99 scaffold386 SAMTools SNP 293811 293811 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 293829 293829 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 294728 294728 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold386 SAMTools SNP 294745 294745 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold386 SAMTools SNP 296179 296179 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold386 SAMTools SNP 296638 296638 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 296714 296714 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.017%2C6.2e-06%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold386 SAMTools SNP 297241 297241 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 298566 298566 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.079%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold386 SAMTools SNP 298588 298588 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C19%2C7%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.094%2C1%2C1%2C6.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold386 SAMTools SNP 299177 299177 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C6%2C17%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.75%2C3.9e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold386 SAMTools SNP 302624 302624 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C265%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold386 SAMTools SNP 304225 304225 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C7%2C29%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.09%2C2.1e-12%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold386 SAMTools SNP 304288 304288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold386 SAMTools SNP 307941 307941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C56%2C50%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 308064 308064 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold386 SAMTools SNP 308103 308103 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C80%2C21%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 308429 308429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C26%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 308432 308432 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C22%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 308975 308975 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C7%2C86%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 309017 309017 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C9%2C120%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.0037%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 310380 310380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C9%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold386 SAMTools SNP 310404 310404 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold386 SAMTools SNP 320202 320202 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold386 SAMTools SNP 320304 320304 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold386 SAMTools SNP 320583 320583 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold386 SAMTools SNP 322496 322496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold386 SAMTools SNP 322514 322514 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold386 SAMTools SNP 323908 323908 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold386 SAMTools SNP 324651 324651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold386 SAMTools SNP 324800 324800 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold386 SAMTools SNP 324870 324870 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.47%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold386 SAMTools SNP 326746 326746 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold386 SAMTools SNP 326778 326778 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold386 SAMTools SNP 327511 327511 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 327519 327519 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 327559 327559 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 328158 328158 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold386 SAMTools SNP 328163 328163 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C222:63 scaffold386 SAMTools SNP 328210 328210 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold386 SAMTools SNP 331347 331347 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold386 SAMTools SNP 331351 331351 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold386 SAMTools SNP 331393 331393 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold386 SAMTools SNP 332108 332108 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold386 SAMTools SNP 334610 334610 8.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold386 SAMTools SNP 334770 334770 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold387 SAMTools SNP 3121 3121 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold387 SAMTools SNP 3175 3175 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 2711 2711 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C36%2C0:64 scaffold388 SAMTools SNP 2776 2776 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold388 SAMTools SNP 3166 3166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold388 SAMTools SNP 9403 9403 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1289%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D643%2C30%2C580%2C20%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.32%2C0%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold388 SAMTools SNP 11548 11548 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold388 SAMTools SNP 11734 11734 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D648%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C274%2C14%2C206%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.46%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 12073 12073 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D813%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C298%2C99%2C266%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 12667 12667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D539%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C246%2C45%2C205%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 12815 12815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C272%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 12885 12885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold388 SAMTools SNP 12912 12912 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold388 SAMTools SNP 13402 13402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D651%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C167%2C14%2C141%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-05%2C3.4e-28%2C1%2C1.7e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 14229 14229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold388 SAMTools SNP 14517 14517 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D24%3BPV4%3D9e-07%2C3.1e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold388 SAMTools SNP 14636 14636 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold388 SAMTools SNP 16142 16142 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold388 SAMTools SNP 20514 20514 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C27%2C0:51 scaffold388 SAMTools SNP 20553 20553 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C9%3BMQ%3D47%3BFQ%3D89%3BPV4%3D1%2C0.37%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C116:99 scaffold388 SAMTools SNP 23581 23581 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.087%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold388 SAMTools SNP 24081 24081 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C8%2C21%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.037%2C3.5e-41%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold388 SAMTools SNP 29499 29499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8002%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D704%2C1671%2C308%2C5319%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-176%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 29529 29529 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7576%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C663%2C6899%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 29571 29571 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2945%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D342%2C1807%2C49%2C697%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-11%2C1%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 29583 29583 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4029%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D403%2C2491%2C93%2C992%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-06%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 30485 30485 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7158%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2186%2C9%2C4940%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.77%2C0%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold388 SAMTools SNP 32473 32473 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C24%2C0:39 scaffold388 SAMTools SNP 36186 36186 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold388 SAMTools SNP 37950 37950 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.47%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold388 SAMTools SNP 38288 38288 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold388 SAMTools SNP 42770 42770 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C2%3BMQ%3D47%3BFQ%3D191%3BPV4%3D1%2C0.2%2C0.3%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C251:99 scaffold388 SAMTools SNP 43784 43784 90.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D0.4%2C0.19%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C8%2C0:14 scaffold388 SAMTools SNP 45290 45290 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D27%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C35:38 scaffold388 SAMTools SNP 47962 47962 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold388 SAMTools SNP 49494 49494 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold388 SAMTools SNP 50116 50116 27.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold388 SAMTools SNP 50537 50537 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C242:94 scaffold388 SAMTools SNP 50959 50959 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold388 SAMTools SNP 51031 51031 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C0:57 scaffold388 SAMTools SNP 54738 54738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 56279 56279 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.048%2C1.3e-08%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold388 SAMTools SNP 56815 56815 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D19%3BPV4%3D1%2C3.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C69:49 scaffold388 SAMTools SNP 57471 57471 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold388 SAMTools SNP 68491 68491 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold388 SAMTools SNP 68574 68574 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold388 SAMTools SNP 73173 73173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C15%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold388 SAMTools SNP 76163 76163 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold388 SAMTools SNP 77616 77616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold388 SAMTools SNP 77646 77646 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.37%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold388 SAMTools SNP 78814 78814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold388 SAMTools SNP 79163 79163 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold388 SAMTools SNP 79469 79469 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold388 SAMTools SNP 79486 79486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold388 SAMTools SNP 80272 80272 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.58%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold388 SAMTools SNP 80275 80275 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0045%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold388 SAMTools SNP 81115 81115 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C132%2C0:99 scaffold388 SAMTools SNP 84508 84508 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold388 SAMTools SNP 85177 85177 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold388 SAMTools SNP 85531 85531 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold388 SAMTools SNP 85587 85587 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold388 SAMTools SNP 85620 85620 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold388 SAMTools SNP 86415 86415 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold388 SAMTools SNP 86429 86429 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold388 SAMTools SNP 86439 86439 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.044%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold388 SAMTools SNP 86969 86969 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C17%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C216:99 scaffold388 SAMTools SNP 87002 87002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold388 SAMTools SNP 87406 87406 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 87779 87779 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold388 SAMTools SNP 87886 87886 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 89780 89780 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 90619 90619 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00042%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C193:43 scaffold388 SAMTools SNP 91281 91281 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C121:61 scaffold388 SAMTools SNP 91600 91600 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C2%2C28%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C4.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold388 SAMTools SNP 92683 92683 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 92733 92733 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 95699 95699 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold388 SAMTools SNP 96038 96038 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold388 SAMTools SNP 96803 96803 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold388 SAMTools SNP 97569 97569 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C16%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1.8e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold388 SAMTools SNP 103410 103410 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C11%2C143%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 103652 103652 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C336%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 103843 103843 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C34%2C23%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 104050 104050 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C20%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 107933 107933 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold388 SAMTools SNP 108223 108223 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 109001 109001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 109251 109251 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C24%2C0:45 scaffold388 SAMTools SNP 115176 115176 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold388 SAMTools SNP 119260 119260 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.3e-25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C222:78 scaffold388 SAMTools SNP 121184 121184 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.27%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold388 SAMTools SNP 123197 123197 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold388 SAMTools SNP 123861 123861 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold388 SAMTools SNP 123869 123869 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 123881 123881 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 124055 124055 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0003%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C35:38 scaffold388 SAMTools SNP 124107 124107 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold388 SAMTools SNP 124330 124330 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 124983 124983 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D6e-06%2C7.7e-11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold388 SAMTools SNP 171031 171031 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C108%2C0:99 scaffold388 SAMTools SNP 172293 172293 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C7%2C0%3BMQ%3D43%3BFQ%3D74%3BPV4%3D1%2C1%2C0.43%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C222:99 scaffold388 SAMTools SNP 172332 172332 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C16%2C0%3BMQ%3D43%3BFQ%3D187%3BPV4%3D0.016%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold388 SAMTools SNP 173290 173290 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C5%3BMQ%3D44%3BFQ%3D140%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold388 SAMTools SNP 175960 175960 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C16%2C0%3BMQ%3D47%3BFQ%3D165%3BPV4%3D0.039%2C0.1%2C1%2C3.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold388 SAMTools SNP 176321 176321 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D713%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D298%2C4%2C390%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 176393 176393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D704%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C386%2C21%2C288%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C0.13%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 179427 179427 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C27:29 scaffold388 SAMTools SNP 183221 183221 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C113:39 scaffold388 SAMTools SNP 183231 183231 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold388 SAMTools SNP 187497 187497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold388 SAMTools SNP 187865 187865 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 187868 187868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 188629 188629 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 189020 189020 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold388 SAMTools SNP 189667 189667 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 190008 190008 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C15%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold388 SAMTools SNP 190019 190019 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C205:99 scaffold388 SAMTools SNP 190238 190238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.026%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold388 SAMTools SNP 190602 190602 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 190635 190635 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold388 SAMTools SNP 190647 190647 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.48%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold388 SAMTools SNP 191814 191814 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold388 SAMTools SNP 191906 191906 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold388 SAMTools SNP 191910 191910 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold388 SAMTools SNP 192340 192340 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C188:99 scaffold388 SAMTools SNP 192922 192922 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold388 SAMTools SNP 202095 202095 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold388 SAMTools SNP 202173 202173 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.1%2C0.013%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C222:70 scaffold388 SAMTools SNP 202198 202198 63.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold388 SAMTools SNP 211858 211858 37.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold388 SAMTools SNP 213656 213656 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold388 SAMTools SNP 216479 216479 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold388 SAMTools SNP 219913 219913 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C2%2C148%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.5%2C1.5e-112%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold388 SAMTools SNP 220079 220079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C206%2C13%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 221120 221120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C119%2C27%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 222523 222523 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C378%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 223103 223103 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C0%2C20%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.09%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold388 SAMTools SNP 223278 223278 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold388 SAMTools SNP 223280 223280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold388 SAMTools SNP 223500 223500 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 223505 223505 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 223615 223615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold388 SAMTools SNP 223795 223795 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C73%2C12%2C41%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.019%2C4.4e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold388 SAMTools SNP 224680 224680 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C1%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.65%2C0.074%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold388 SAMTools SNP 224689 224689 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.086%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 224936 224936 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C18%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C0.051%2C0.18%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 225005 225005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C27%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.39%2C1%2C0.098%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold388 SAMTools SNP 225435 225435 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 226202 226202 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold388 SAMTools SNP 231827 231827 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold388 SAMTools SNP 248957 248957 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C6%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.26%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold388 SAMTools SNP 253488 253488 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C57%2C0:99 scaffold388 SAMTools SNP 253568 253568 153 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C45%2C0%2C175%2C22%2C172:87 scaffold388 SAMTools SNP 266961 266961 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold388 SAMTools SNP 267034 267034 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 270948 270948 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 274028 274028 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold388 SAMTools SNP 274442 274442 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.33%2C0.0065%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C80:59 scaffold388 SAMTools SNP 274456 274456 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 274467 274467 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 274486 274486 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 275155 275155 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold388 SAMTools SNP 275749 275749 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold388 SAMTools SNP 276588 276588 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 280351 280351 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold388 SAMTools SNP 280476 280476 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold388 SAMTools SNP 281013 281013 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C200:99 scaffold388 SAMTools SNP 281958 281958 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold388 SAMTools SNP 281968 281968 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold388 SAMTools SNP 282394 282394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.22%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold388 SAMTools SNP 282459 282459 103 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold388 SAMTools SNP 283343 283343 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold388 SAMTools SNP 283347 283347 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold388 SAMTools SNP 285612 285612 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold388 SAMTools SNP 288483 288483 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold388 SAMTools SNP 288538 288538 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C78%2C0:99 scaffold388 SAMTools SNP 288600 288600 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold388 SAMTools SNP 288972 288972 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0148%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C120:31 scaffold388 SAMTools SNP 290021 290021 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold388 SAMTools SNP 290031 290031 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold388 SAMTools SNP 290280 290280 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C129:99 scaffold388 SAMTools SNP 291239 291239 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 291243 291243 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 291851 291851 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 291877 291877 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.013%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C140:34 scaffold388 SAMTools SNP 291890 291890 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.2e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold388 SAMTools SNP 291897 291897 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold388 SAMTools SNP 294329 294329 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.22%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold388 SAMTools SNP 294334 294334 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold388 SAMTools SNP 297831 297831 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold388 SAMTools SNP 297837 297837 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 298693 298693 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold388 SAMTools SNP 298735 298735 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold388 SAMTools SNP 300709 300709 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 300730 300730 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 302590 302590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 304573 304573 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.084%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold388 SAMTools SNP 304594 304594 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold388 SAMTools SNP 306853 306853 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold388 SAMTools SNP 306943 306943 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C216:40 scaffold388 SAMTools SNP 308801 308801 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold388 SAMTools SNP 309207 309207 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold388 SAMTools SNP 309244 309244 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 310304 310304 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold388 SAMTools SNP 310940 310940 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold388 SAMTools SNP 311109 311109 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 311137 311137 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 311727 311727 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 312481 312481 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold388 SAMTools SNP 318707 318707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 319191 319191 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 320585 320585 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold388 SAMTools SNP 320628 320628 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold388 SAMTools SNP 322888 322888 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold388 SAMTools SNP 324927 324927 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 331938 331938 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 331988 331988 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold388 SAMTools SNP 335194 335194 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C32%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.0068%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 335974 335974 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C30%2C37%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 336007 336007 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D235%2C39%2C183%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 336058 336058 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D529%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C69%2C254%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-05%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 338913 338913 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 338918 338918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 339189 339189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold388 SAMTools SNP 339192 339192 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold388 SAMTools SNP 340317 340317 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C240:99 scaffold388 SAMTools SNP 340328 340328 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C243:99 scaffold388 SAMTools SNP 340571 340571 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 340583 340583 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C6.9e-14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 341240 341240 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold388 SAMTools SNP 341928 341928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C146%2C24%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 348605 348605 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold388 SAMTools SNP 348705 348705 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C140%2C377%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 348735 348735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C246%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 351696 351696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold388 SAMTools SNP 352625 352625 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.051%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C231:31 scaffold388 SAMTools SNP 352628 352628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold388 SAMTools SNP 352631 352631 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.22%2C0.029%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold388 SAMTools SNP 353522 353522 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 353620 353620 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 358972 358972 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold388 SAMTools SNP 359547 359547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold388 SAMTools SNP 360044 360044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C9%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold388 SAMTools SNP 364413 364413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold388 SAMTools SNP 369833 369833 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 370496 370496 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 374803 374803 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.14%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold388 SAMTools SNP 374804 374804 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.24%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold388 SAMTools SNP 378743 378743 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold388 SAMTools SNP 379678 379678 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D12%2C18%2C7%2C13%3BMQ%3D16%3BFQ%3D3.02%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C27:30 scaffold388 SAMTools SNP 379731 379731 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C32%2C81%2C11%3BMQ%3D43%3BFQ%3D225%3BPV4%3D8.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 379757 379757 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C21%2C52%2C20%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.28%2C0.12%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 379764 379764 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C26%2C81%2C10%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 381440 381440 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C3%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.43%2C0.033%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold388 SAMTools SNP 381475 381475 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold388 SAMTools SNP 381509 381509 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C167:99 scaffold388 SAMTools SNP 381528 381528 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.042%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold388 SAMTools SNP 381529 381529 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C13%2C19%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.12%2C0.11%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold388 SAMTools SNP 381585 381585 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C2%2C117%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 382896 382896 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 385339 385339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold388 SAMTools SNP 389717 389717 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.043%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold388 SAMTools SNP 398431 398431 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold388 SAMTools SNP 398440 398440 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold388 SAMTools SNP 399115 399115 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold388 SAMTools SNP 399178 399178 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C22%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D3.9e-06%2C1.4e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C147:99 scaffold388 SAMTools SNP 399351 399351 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C0.0011%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold388 SAMTools SNP 399951 399951 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C5.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold388 SAMTools SNP 400002 400002 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.32%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold388 SAMTools SNP 400045 400045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 400903 400903 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 400905 400905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 409528 409528 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-92;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C190:94 scaffold388 SAMTools SNP 409557 409557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold388 SAMTools SNP 412405 412405 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold388 SAMTools SNP 520651 520651 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C23%2C80%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 520973 520973 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C91%2C19%2C23%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.06%2C1.4e-06%2C1%2C1.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold388 SAMTools SNP 529590 529590 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold388 SAMTools SNP 537010 537010 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 537031 537031 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C136:30 scaffold388 SAMTools SNP 538193 538193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C18%2C32%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 538727 538727 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold388 SAMTools SNP 538769 538769 187 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.09%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold388 SAMTools SNP 539214 539214 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold388 SAMTools SNP 539657 539657 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C2%2C15%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C8.8e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold388 SAMTools SNP 542339 542339 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 543264 543264 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.15%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 544526 544526 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold388 SAMTools SNP 545048 545048 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.022%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold388 SAMTools SNP 545090 545090 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 545284 545284 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.61%2C0.0052%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C185:99 scaffold388 SAMTools SNP 546272 546272 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C221:99 scaffold388 SAMTools SNP 546273 546273 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold388 SAMTools SNP 547475 547475 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold388 SAMTools SNP 548884 548884 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 548914 548914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.43%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold388 SAMTools SNP 550959 550959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.58%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold388 SAMTools SNP 556026 556026 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 557174 557174 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 557655 557655 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold388 SAMTools SNP 561348 561348 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold388 SAMTools SNP 561863 561863 19.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold388 SAMTools SNP 562329 562329 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold388 SAMTools SNP 563837 563837 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.45%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold388 SAMTools SNP 563882 563882 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold388 SAMTools SNP 564806 564806 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C5%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold388 SAMTools SNP 565341 565341 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.1%2C0.024%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold388 SAMTools SNP 565347 565347 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.59%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold388 SAMTools SNP 565463 565463 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold388 SAMTools SNP 566133 566133 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold388 SAMTools SNP 566731 566731 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 567086 567086 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold388 SAMTools SNP 567190 567190 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold388 SAMTools SNP 567212 567212 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.089%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold388 SAMTools SNP 567255 567255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold388 SAMTools SNP 567765 567765 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold388 SAMTools SNP 569191 569191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold388 SAMTools SNP 569539 569539 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold388 SAMTools SNP 569569 569569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold388 SAMTools SNP 569896 569896 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold388 SAMTools SNP 569995 569995 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C3.2e-12%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C152:65 scaffold388 SAMTools SNP 570869 570869 31.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold388 SAMTools SNP 573383 573383 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold388 SAMTools SNP 573816 573816 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C22%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C253:99 scaffold388 SAMTools SNP 574108 574108 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold388 SAMTools SNP 574129 574129 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold388 SAMTools SNP 576207 576207 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 576229 576229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 577083 577083 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold388 SAMTools SNP 577833 577833 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 577834 577834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 577850 577850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 578854 578854 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold388 SAMTools SNP 578881 578881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold388 SAMTools SNP 579435 579435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 580916 580916 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold388 SAMTools SNP 580991 580991 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.16%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold388 SAMTools SNP 590578 590578 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C21%2C0%2C15%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0021%2C3.3e-24%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold388 SAMTools SNP 591517 591517 55.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold388 SAMTools SNP 592430 592430 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.4e-06%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C63:66 scaffold388 SAMTools SNP 592686 592686 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C19%2C22%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.47%2C9.5e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold388 SAMTools SNP 593560 593560 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold388 SAMTools SNP 598403 598403 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold388 SAMTools SNP 598424 598424 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold388 SAMTools SNP 606310 606310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 606311 606311 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold388 SAMTools SNP 610752 610752 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold388 SAMTools SNP 610925 610925 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold388 SAMTools SNP 611059 611059 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.26%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold388 SAMTools SNP 611288 611288 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D2.7e-05%2C1.4e-07%2C1%2C5.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold388 SAMTools SNP 611832 611832 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold388 SAMTools SNP 612272 612272 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold388 SAMTools SNP 613017 613017 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold388 SAMTools SNP 613501 613501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold388 SAMTools SNP 615062 615062 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold388 SAMTools SNP 615471 615471 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.012%2C1.1e-05%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C176:34 scaffold388 SAMTools SNP 615765 615765 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold388 SAMTools SNP 616588 616588 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold388 SAMTools SNP 617321 617321 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold388 SAMTools SNP 617358 617358 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold388 SAMTools SNP 617608 617608 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold388 SAMTools SNP 617653 617653 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold388 SAMTools SNP 617719 617719 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.065%2C0.23%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold388 SAMTools SNP 617989 617989 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0012%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold388 SAMTools SNP 625552 625552 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C184:44 scaffold388 SAMTools SNP 625731 625731 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.7e-48%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C224:48 scaffold388 SAMTools SNP 626280 626280 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold388 SAMTools SNP 626304 626304 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C197:99 scaffold388 SAMTools SNP 626322 626322 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.018%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold389 SAMTools SNP 15778 15778 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 15781 15781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 15868 15868 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 39657 39657 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C186:59 scaffold389 SAMTools SNP 67529 67529 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 67917 67917 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 68744 68744 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold389 SAMTools SNP 81027 81027 71.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold389 SAMTools SNP 81369 81369 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold389 SAMTools SNP 81958 81958 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C92%2C0%2C17%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C1%2C1%2C9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold389 SAMTools SNP 82343 82343 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.2%2C0.026%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold389 SAMTools SNP 82361 82361 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold389 SAMTools SNP 82367 82367 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C9%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D2.9e-08%2C3.1e-16%2C1%2C7.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold389 SAMTools SNP 83220 83220 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C3.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold389 SAMTools SNP 83723 83723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold389 SAMTools SNP 83801 83801 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold389 SAMTools SNP 84332 84332 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C135:99 scaffold389 SAMTools SNP 84336 84336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold389 SAMTools SNP 85506 85506 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.063%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold389 SAMTools SNP 85984 85984 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold389 SAMTools SNP 86020 86020 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold389 SAMTools SNP 86318 86318 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C1%2C0.014%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold389 SAMTools SNP 88374 88374 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold389 SAMTools SNP 90019 90019 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.5%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold389 SAMTools SNP 90034 90034 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold389 SAMTools SNP 93622 93622 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold389 SAMTools SNP 93672 93672 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.44%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C152:99 scaffold389 SAMTools SNP 93924 93924 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C11%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.18%2C2.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C241:60 scaffold389 SAMTools SNP 97448 97448 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C21%2C0:39 scaffold389 SAMTools SNP 98289 98289 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold389 SAMTools SNP 98350 98350 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.1%2C5.7e-07%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold389 SAMTools SNP 98430 98430 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold389 SAMTools SNP 101345 101345 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold389 SAMTools SNP 101373 101373 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold389 SAMTools SNP 101397 101397 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold389 SAMTools SNP 101409 101409 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold389 SAMTools SNP 101423 101423 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold389 SAMTools SNP 101952 101952 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold389 SAMTools SNP 102497 102497 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold389 SAMTools SNP 104635 104635 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold389 SAMTools SNP 104644 104644 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold389 SAMTools SNP 109159 109159 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold389 SAMTools SNP 109177 109177 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold389 SAMTools SNP 109307 109307 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold389 SAMTools SNP 115752 115752 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 118403 118403 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold389 SAMTools SNP 118431 118431 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold389 SAMTools SNP 125263 125263 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold389 SAMTools SNP 125389 125389 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold389 SAMTools SNP 125502 125502 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C215:99 scaffold389 SAMTools SNP 125535 125535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold389 SAMTools SNP 125703 125703 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold389 SAMTools SNP 128130 128130 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.081%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold389 SAMTools SNP 128202 128202 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39174 SAMTools SNP 15561 15561 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C88:33 scaffold39174 SAMTools SNP 60781 60781 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39174 SAMTools SNP 65241 65241 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 4760 4760 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 4830 4830 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 5101 5101 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold392 SAMTools SNP 30302 30302 67.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold392 SAMTools SNP 45810 45810 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold392 SAMTools SNP 46020 46020 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold392 SAMTools SNP 46972 46972 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold392 SAMTools SNP 115184 115184 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 115309 115309 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold392 SAMTools SNP 116230 116230 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0062%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold392 SAMTools SNP 117744 117744 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C29:32 scaffold392 SAMTools SNP 117755 117755 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold392 SAMTools SNP 118086 118086 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold392 SAMTools SNP 118112 118112 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold392 SAMTools SNP 118178 118178 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold392 SAMTools SNP 118746 118746 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 123695 123695 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 148249 148249 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold392 SAMTools SNP 149130 149130 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold392 SAMTools SNP 149141 149141 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold392 SAMTools SNP 151535 151535 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 151542 151542 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold392 SAMTools SNP 151578 151578 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold392 SAMTools SNP 153957 153957 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold392 SAMTools SNP 154065 154065 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold392 SAMTools SNP 224675 224675 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold392 SAMTools SNP 224693 224693 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold392 SAMTools SNP 224918 224918 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold392 SAMTools SNP 225406 225406 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold392 SAMTools SNP 225409 225409 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold392 SAMTools SNP 225429 225429 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold392 SAMTools SNP 235646 235646 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 252220 252220 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C245:93 scaffold392 SAMTools SNP 252714 252714 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold392 SAMTools SNP 252732 252732 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold392 SAMTools SNP 252767 252767 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold392 SAMTools SNP 252795 252795 159 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C63%2C241%2C0%2C235:45 scaffold392 SAMTools SNP 255331 255331 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C0.39%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C198:99 scaffold392 SAMTools SNP 255381 255381 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold392 SAMTools SNP 255397 255397 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.51%2C0.031%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold392 SAMTools SNP 255421 255421 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 256555 256555 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 256557 256557 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 257320 257320 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold392 SAMTools SNP 257721 257721 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold392 SAMTools SNP 258102 258102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C27%2C12%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.12%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold392 SAMTools SNP 259630 259630 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold392 SAMTools SNP 259633 259633 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold392 SAMTools SNP 259746 259746 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C240:69 scaffold392 SAMTools SNP 260205 260205 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold392 SAMTools SNP 260217 260217 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold392 SAMTools SNP 260265 260265 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C7.9e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C26:29 scaffold392 SAMTools SNP 260391 260391 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C51:54 scaffold392 SAMTools SNP 260538 260538 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.018%2C3.4e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold392 SAMTools SNP 260619 260619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold392 SAMTools SNP 260966 260966 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold392 SAMTools SNP 261002 261002 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold392 SAMTools SNP 261540 261540 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 261546 261546 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold392 SAMTools SNP 262201 262201 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold392 SAMTools SNP 262718 262718 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 268206 268206 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold392 SAMTools SNP 282139 282139 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C240:99 scaffold392 SAMTools SNP 282176 282176 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold392 SAMTools SNP 309303 309303 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold392 SAMTools SNP 309767 309767 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold392 SAMTools SNP 311214 311214 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 312159 312159 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold392 SAMTools SNP 317726 317726 25.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold392 SAMTools SNP 318010 318010 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C17%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C187%2C0:99 scaffold392 SAMTools SNP 318369 318369 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.054%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C175:53 scaffold392 SAMTools SNP 318373 318373 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C178:72 scaffold392 SAMTools SNP 318405 318405 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold392 SAMTools SNP 318670 318670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold392 SAMTools SNP 318796 318796 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.58%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold392 SAMTools SNP 318859 318859 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold392 SAMTools SNP 318874 318874 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C5%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.69%2C0.025%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold392 SAMTools SNP 319027 319027 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C6%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold392 SAMTools SNP 320597 320597 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.39%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold392 SAMTools SNP 320657 320657 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.52%2C0.47%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C190:99 scaffold392 SAMTools SNP 320801 320801 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold392 SAMTools SNP 325424 325424 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold392 SAMTools SNP 326049 326049 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold392 SAMTools SNP 326098 326098 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.39%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold392 SAMTools SNP 326252 326252 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold392 SAMTools SNP 327114 327114 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold392 SAMTools SNP 327126 327126 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold392 SAMTools SNP 328102 328102 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold392 SAMTools SNP 328307 328307 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C33%2C0:62 scaffold392 SAMTools SNP 331821 331821 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold392 SAMTools SNP 332253 332253 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold392 SAMTools SNP 332278 332278 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold392 SAMTools SNP 332299 332299 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold392 SAMTools SNP 332678 332678 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold392 SAMTools SNP 332704 332704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold392 SAMTools SNP 333224 333224 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.029%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold392 SAMTools SNP 334196 334196 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold392 SAMTools SNP 335060 335060 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold392 SAMTools SNP 335145 335145 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 335159 335159 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold392 SAMTools SNP 336921 336921 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold392 SAMTools SNP 339226 339226 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C38%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold392 SAMTools SNP 340158 340158 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold392 SAMTools SNP 340190 340190 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold392 SAMTools SNP 403471 403471 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 403869 403869 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold392 SAMTools SNP 419700 419700 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold392 SAMTools SNP 419736 419736 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold392 SAMTools SNP 419851 419851 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold392 SAMTools SNP 424503 424503 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 425467 425467 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold392 SAMTools SNP 425480 425480 226 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C8%3BMQ%3D48%3BFQ%3D-25%3BPV4%3D1%2C0.39%2C0.4%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold392 SAMTools SNP 425590 425590 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C42%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold392 SAMTools SNP 425597 425597 74.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold392 SAMTools SNP 425772 425772 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 425775 425775 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 425827 425827 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold392 SAMTools SNP 426933 426933 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold392 SAMTools SNP 437977 437977 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold392 SAMTools SNP 438485 438485 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold392 SAMTools SNP 537844 537844 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold392 SAMTools SNP 539948 539948 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1.7e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold392 SAMTools SNP 540152 540152 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C244:36 scaffold392 SAMTools SNP 540584 540584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C8.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold392 SAMTools SNP 540605 540605 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C8%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1.2e-25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold392 SAMTools SNP 548761 548761 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold392 SAMTools SNP 548785 548785 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold392 SAMTools SNP 554269 554269 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold392 SAMTools SNP 621593 621593 11.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-6.22%3BPV4%3D0.17%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C22:26 scaffold392 SAMTools SNP 621732 621732 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold392 SAMTools SNP 621738 621738 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold392 SAMTools SNP 622314 622314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold392 SAMTools SNP 622344 622344 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold392 SAMTools SNP 622680 622680 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold392 SAMTools SNP 623300 623300 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold392 SAMTools SNP 623952 623952 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold392 SAMTools SNP 625316 625316 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold392 SAMTools SNP 625349 625349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold392 SAMTools SNP 625355 625355 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold392 SAMTools SNP 625394 625394 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold392 SAMTools SNP 626021 626021 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.071%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold392 SAMTools SNP 626027 626027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold392 SAMTools SNP 626096 626096 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold392 SAMTools SNP 626547 626547 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold392 SAMTools SNP 626574 626574 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold392 SAMTools SNP 626592 626592 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold392 SAMTools SNP 644244 644244 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold392 SAMTools SNP 645070 645070 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold392 SAMTools SNP 646000 646000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold392 SAMTools SNP 646039 646039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold392 SAMTools SNP 646072 646072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold392 SAMTools SNP 646997 646997 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C0.16%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold392 SAMTools SNP 647019 647019 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold392 SAMTools SNP 647051 647051 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C78%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold392 SAMTools SNP 647999 647999 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C2%2C56%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold392 SAMTools SNP 648433 648433 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.41%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C115:99 scaffold392 SAMTools SNP 653386 653386 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C32%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-06%2C7.1e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold392 SAMTools SNP 658028 658028 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C1%2C17%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0076%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold392 SAMTools SNP 658227 658227 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C84%2C0:99 scaffold392 SAMTools SNP 659873 659873 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C63%2C0:99 scaffold392 SAMTools SNP 660128 660128 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold392 SAMTools SNP 661600 661600 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C14%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.28%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold392 SAMTools SNP 667545 667545 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C4%3BMQ%3D49%3BFQ%3D140%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold392 SAMTools SNP 667551 667551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C16%3BMQ%3D49%3BFQ%3D154%3BPV4%3D0.56%2C0.25%2C0.29%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold392 SAMTools SNP 667584 667584 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C1%3BMQ%3D48%3BFQ%3D74%3BPV4%3D0.18%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold392 SAMTools SNP 667612 667612 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D36%3BPV4%3D0.13%2C1%2C0.32%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C63:66 scaffold392 SAMTools SNP 667659 667659 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 667665 667665 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold392 SAMTools SNP 667677 667677 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D47%3BFQ%3D50%3BPV4%3D0.52%2C0.15%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C77:80 scaffold392 SAMTools SNP 669138 669138 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C76:79 scaffold392 SAMTools SNP 669918 669918 19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold392 SAMTools SNP 681576 681576 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold392 SAMTools SNP 682676 682676 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C45%2C0:87 scaffold392 SAMTools SNP 682782 682782 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C141%2C0:99 scaffold392 SAMTools SNP 689580 689580 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold392 SAMTools SNP 704566 704566 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold392 SAMTools SNP 707542 707542 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold392 SAMTools SNP 716801 716801 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 716975 716975 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D49.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C88:80 scaffold392 SAMTools SNP 717008 717008 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold392 SAMTools SNP 717228 717228 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold392 SAMTools SNP 744339 744339 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C2%2C6%3BMQ%3D48%3BFQ%3D105%3BPV4%3D1%2C1.1e-06%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold392 SAMTools SNP 746154 746154 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold392 SAMTools SNP 746417 746417 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C1%3BMQ%3D49%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold392 SAMTools SNP 747509 747509 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C11%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.011%2C1%2C0.019%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold392 SAMTools SNP 747542 747542 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C5%2C3%3BMQ%3D48%3BFQ%3D140%3BPV4%3D1%2C0.3%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold392 SAMTools SNP 747578 747578 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C1%2C6%3BMQ%3D49%3BFQ%3D54%3BPV4%3D1%2C0.099%2C0.026%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold392 SAMTools SNP 747598 747598 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C34%2C0%2C6%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D0.58%2C0.033%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold392 SAMTools SNP 747609 747609 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C0%2C8%3BMQ%3D49%3BFQ%3D56%3BPV4%3D0.32%2C0.025%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold392 SAMTools SNP 748132 748132 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D42%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C172:99 scaffold392 SAMTools SNP 748147 748147 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C5%2C7%2C4%3BMQ%3D23%3BFQ%3D65%3BPV4%3D0.059%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C141:95 scaffold392 SAMTools SNP 749026 749026 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C6%2C1%3BMQ%3D37%3BFQ%3D76%3BPV4%3D0.19%2C3.5e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C197:99 scaffold392 SAMTools SNP 749316 749316 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C12%3BMQ%3D49%3BFQ%3D102%3BPV4%3D0.098%2C0.023%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C129:99 scaffold392 SAMTools SNP 749395 749395 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold392 SAMTools SNP 750813 750813 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold392 SAMTools SNP 750841 750841 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold392 SAMTools SNP 814684 814684 46.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold392 SAMTools SNP 815301 815301 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold392 SAMTools SNP 815353 815353 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold392 SAMTools SNP 896151 896151 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 896173 896173 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 896458 896458 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 898167 898167 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold392 SAMTools SNP 899098 899098 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold392 SAMTools SNP 899123 899123 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.079%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold392 SAMTools SNP 900211 900211 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold392 SAMTools SNP 903294 903294 12 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold39212 SAMTools SNP 12117 12117 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold39212 SAMTools SNP 12118 12118 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39212 SAMTools SNP 13571 13571 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold39212 SAMTools SNP 15381 15381 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39212 SAMTools SNP 15519 15519 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39212 SAMTools SNP 15533 15533 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39212 SAMTools SNP 15985 15985 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold39212 SAMTools SNP 17717 17717 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39212 SAMTools SNP 60292 60292 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold39214 SAMTools SNP 8011 8011 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39214 SAMTools SNP 8063 8063 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39214 SAMTools SNP 63870 63870 25.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold39214 SAMTools SNP 64779 64779 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C102%2C0:99 scaffold39214 SAMTools SNP 66290 66290 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2708%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1020%2C1134%2C511%2C43%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D4.7e-94%2C0%2C1%2C5e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold39214 SAMTools SNP 66357 66357 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1358%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C582%2C40%2C76%3BMQ%3D49%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39240 SAMTools SNP 6510 6510 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold39240 SAMTools SNP 6519 6519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold39240 SAMTools SNP 7878 7878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D39%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39240 SAMTools SNP 7935 7935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C9%3BMQ%3D40%3BFQ%3D131%3BPV4%3D0.34%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold39240 SAMTools SNP 8460 8460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D37%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39240 SAMTools SNP 8517 8517 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold39240 SAMTools SNP 10928 10928 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39240 SAMTools SNP 11098 11098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39240 SAMTools SNP 11152 11152 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39240 SAMTools SNP 11585 11585 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39240 SAMTools SNP 13691 13691 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39240 SAMTools SNP 13978 13978 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39240 SAMTools SNP 14058 14058 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold39240 SAMTools SNP 14078 14078 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39240 SAMTools SNP 14586 14586 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold39240 SAMTools SNP 14658 14658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39240 SAMTools SNP 14688 14688 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39240 SAMTools SNP 16830 16830 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold39240 SAMTools SNP 17166 17166 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0:45 scaffold39240 SAMTools SNP 21958 21958 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold39240 SAMTools SNP 22109 22109 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.22%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold39240 SAMTools SNP 22122 22122 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold39240 SAMTools SNP 22145 22145 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold39240 SAMTools SNP 22155 22155 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.39%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold39240 SAMTools SNP 22179 22179 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39240 SAMTools SNP 22555 22555 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39240 SAMTools SNP 22561 22561 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39240 SAMTools SNP 22567 22567 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.7e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39240 SAMTools SNP 22588 22588 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39240 SAMTools SNP 23093 23093 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold39240 SAMTools SNP 23101 23101 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39240 SAMTools SNP 25119 25119 25.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C10:13 scaffold39240 SAMTools SNP 37735 37735 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39244 SAMTools SNP 8031 8031 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39244 SAMTools SNP 11623 11623 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold39244 SAMTools SNP 21164 21164 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39244 SAMTools SNP 25160 25160 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39244 SAMTools SNP 33584 33584 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39244 SAMTools SNP 38925 38925 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold39244 SAMTools SNP 38942 38942 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold39244 SAMTools SNP 39345 39345 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39244 SAMTools SNP 44117 44117 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39244 SAMTools SNP 44138 44138 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39244 SAMTools SNP 45285 45285 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold39244 SAMTools SNP 47040 47040 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39244 SAMTools SNP 63326 63326 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39244 SAMTools SNP 66169 66169 3.55 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold39258 SAMTools SNP 17575 17575 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 17863 17863 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 21446 21446 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C54%2C0:99 scaffold39258 SAMTools SNP 21506 21506 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold39258 SAMTools SNP 23214 23214 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39258 SAMTools SNP 23247 23247 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C65%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold39258 SAMTools SNP 23274 23274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C7%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39258 SAMTools SNP 23528 23528 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold39258 SAMTools SNP 28282 28282 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C144%2C0:99 scaffold39258 SAMTools SNP 28528 28528 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold39258 SAMTools SNP 30739 30739 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 30781 30781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 31487 31487 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39258 SAMTools SNP 31493 31493 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39258 SAMTools SNP 31830 31830 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 31893 31893 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 33295 33295 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39258 SAMTools SNP 33326 33326 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39258 SAMTools SNP 33505 33505 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 33551 33551 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C29:32 scaffold39258 SAMTools SNP 33599 33599 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 33960 33960 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39258 SAMTools SNP 34219 34219 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 34220 34220 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39258 SAMTools SNP 34236 34236 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39258 SAMTools SNP 34273 34273 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold39258 SAMTools SNP 34276 34276 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold39258 SAMTools SNP 34775 34775 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39258 SAMTools SNP 35018 35018 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C180:99 scaffold39258 SAMTools SNP 35805 35805 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 35810 35810 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 35813 35813 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold39258 SAMTools SNP 35846 35846 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold39258 SAMTools SNP 36140 36140 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39258 SAMTools SNP 36341 36341 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39258 SAMTools SNP 43001 43001 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.1%2C5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C147:75 scaffold39258 SAMTools SNP 43750 43750 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold39258 SAMTools SNP 44155 44155 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.064%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold39258 SAMTools SNP 44291 44291 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C160:99 scaffold39258 SAMTools SNP 44518 44518 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39258 SAMTools SNP 45176 45176 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C70:73 scaffold39258 SAMTools SNP 45409 45409 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D45%3BFQ%3D43.8%3BPV4%3D1%2C0.12%2C0.25%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C85:74 scaffold39258 SAMTools SNP 49290 49290 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 50633 50633 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39258 SAMTools SNP 50638 50638 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39258 SAMTools SNP 51359 51359 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0039%2C6.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold39258 SAMTools SNP 51426 51426 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.084%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold39258 SAMTools SNP 54786 54786 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C199:99 scaffold39258 SAMTools SNP 54822 54822 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold39258 SAMTools SNP 57823 57823 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.9e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold39258 SAMTools SNP 58638 58638 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39258 SAMTools SNP 60765 60765 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39258 SAMTools SNP 62932 62932 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold39258 SAMTools SNP 64681 64681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold39258 SAMTools SNP 65506 65506 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold39262 SAMTools SNP 3707 3707 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39262 SAMTools SNP 3947 3947 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold39262 SAMTools SNP 31150 31150 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39262 SAMTools SNP 55301 55301 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D194%2C43%2C91%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39262 SAMTools SNP 56259 56259 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C21%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.1e-53%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C248:58 scaffold39262 SAMTools SNP 56541 56541 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C111%2C0:99 scaffold39262 SAMTools SNP 57131 57131 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold39262 SAMTools SNP 59687 59687 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39268 SAMTools SNP 17910 17910 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39268 SAMTools SNP 18107 18107 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39268 SAMTools SNP 52813 52813 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39268 SAMTools SNP 63090 63090 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39268 SAMTools SNP 63374 63374 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39268 SAMTools SNP 65693 65693 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39272 SAMTools SNP 187 187 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39272 SAMTools SNP 15624 15624 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold39272 SAMTools SNP 35440 35440 12 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold39272 SAMTools SNP 36123 36123 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C38:41 scaffold39272 SAMTools SNP 36124 36124 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C38:41 scaffold39272 SAMTools SNP 37001 37001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39272 SAMTools SNP 37008 37008 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39272 SAMTools SNP 44940 44940 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39272 SAMTools SNP 44970 44970 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39274 SAMTools SNP 36775 36775 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39274 SAMTools SNP 36794 36794 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39274 SAMTools SNP 36835 36835 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39274 SAMTools SNP 37286 37286 60.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold39274 SAMTools SNP 37448 37448 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39274 SAMTools SNP 37450 37450 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39274 SAMTools SNP 46230 46230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold39274 SAMTools SNP 46263 46263 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C4%2C42%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.68%2C1.2e-46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold39274 SAMTools SNP 46293 46293 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C45%2C0%2C41%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.12%2C3.8e-80%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold39274 SAMTools SNP 52592 52592 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39274 SAMTools SNP 58541 58541 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C30%2C0:57 scaffold39274 SAMTools SNP 59222 59222 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.17%2C6.3e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C132:99 scaffold39274 SAMTools SNP 61773 61773 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39274 SAMTools SNP 64261 64261 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold393 SAMTools SNP 264 264 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold393 SAMTools SNP 9907 9907 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C5%2C54%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.38%2C6.1e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold393 SAMTools SNP 10804 10804 36.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold393 SAMTools SNP 18221 18221 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 20659 20659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 20927 20927 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C1%3BMQ%3D40%3BFQ%3D93%3BPV4%3D1%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C120:99 scaffold393 SAMTools SNP 20993 20993 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C8%3BMQ%3D35%3BFQ%3D28%3BPV4%3D0.04%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C55:58 scaffold393 SAMTools SNP 21261 21261 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold393 SAMTools SNP 21293 21293 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold393 SAMTools SNP 21308 21308 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold393 SAMTools SNP 22229 22229 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C3%3BMQ%3D36%3BFQ%3D66%3BPV4%3D1%2C0.25%2C0.43%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C195:96 scaffold393 SAMTools SNP 23528 23528 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C1%3BMQ%3D40%3BFQ%3D20.1%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C221:50 scaffold393 SAMTools SNP 23555 23555 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C4%3BMQ%3D45%3BFQ%3D166%3BPV4%3D0.33%2C0.29%2C0.1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C208:99 scaffold393 SAMTools SNP 24026 24026 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C5%3BMQ%3D49%3BFQ%3D108%3BPV4%3D0.51%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold393 SAMTools SNP 24390 24390 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 25451 25451 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold393 SAMTools SNP 25599 25599 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold393 SAMTools SNP 25847 25847 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold393 SAMTools SNP 27186 27186 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C244%2C1%2C209%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 27188 27188 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D475%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C453%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 29919 29919 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C218%2C10%2C241%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 29965 29965 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00094%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 29970 29970 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 30107 30107 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 30167 30167 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C19%2C23%2C0%3BMQ%3D47%3BFQ%3D183%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold393 SAMTools SNP 30179 30179 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C25%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 30251 30251 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C1%2C19%3BMQ%3D41%3BFQ%3D183%3BPV4%3D0.023%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C235:99 scaffold393 SAMTools SNP 30472 30472 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C5%3BMQ%3D35%3BFQ%3D32%3BPV4%3D0.16%2C0.29%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold393 SAMTools SNP 30493 30493 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D33%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold393 SAMTools SNP 30638 30638 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C14%2C1%2C3%3BMQ%3D47%3BFQ%3D6.99%3BPV4%3D0.33%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold393 SAMTools SNP 31468 31468 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C71:74 scaffold393 SAMTools SNP 31752 31752 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold393 SAMTools SNP 32416 32416 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.65%2C0.002%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold393 SAMTools SNP 33303 33303 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold393 SAMTools SNP 35165 35165 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold393 SAMTools SNP 35385 35385 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold393 SAMTools SNP 35915 35915 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.17%2C2.9e-05%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C156:80 scaffold393 SAMTools SNP 36068 36068 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C0.00067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold393 SAMTools SNP 36677 36677 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold393 SAMTools SNP 36766 36766 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D48%3BFQ%3D32%3BPV4%3D1%2C8.3e-12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C124:62 scaffold393 SAMTools SNP 36777 36777 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C0:53 scaffold393 SAMTools SNP 95571 95571 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold393 SAMTools SNP 102919 102919 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold393 SAMTools SNP 103342 103342 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D23%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C112:53 scaffold393 SAMTools SNP 106091 106091 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold393 SAMTools SNP 106092 106092 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold393 SAMTools SNP 107398 107398 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold393 SAMTools SNP 107593 107593 9.31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold393 SAMTools SNP 112559 112559 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold393 SAMTools SNP 116936 116936 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D47%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C107:99 scaffold393 SAMTools SNP 116980 116980 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C0%3BMQ%3D41%3BFQ%3D64%3BPV4%3D0.24%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold393 SAMTools SNP 117155 117155 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 117174 117174 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 135762 135762 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C14%2C4%3BMQ%3D41%3BFQ%3D97%3BPV4%3D0.54%2C0.23%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold393 SAMTools SNP 135791 135791 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D38%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold393 SAMTools SNP 141765 141765 58.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold393 SAMTools SNP 145460 145460 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C12%3BMQ%3D40%3BFQ%3D63%3BPV4%3D1%2C0.39%2C9.8e-07%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C233:93 scaffold393 SAMTools SNP 145478 145478 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C11%3BMQ%3D41%3BFQ%3D63%3BPV4%3D1%2C1%2C2.8e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C234:93 scaffold393 SAMTools SNP 145505 145505 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C9%3BMQ%3D42%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C245:99 scaffold393 SAMTools SNP 267004 267004 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold393 SAMTools SNP 267278 267278 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 267284 267284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 273641 273641 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold393 SAMTools SNP 274000 274000 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 274618 274618 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C258%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 275041 275041 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C75%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 278389 278389 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C70%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C229%2C0:99 scaffold393 SAMTools SNP 278612 278612 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C4%2C21%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C6.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold393 SAMTools SNP 280328 280328 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C90%2C0:99 scaffold393 SAMTools SNP 280870 280870 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C48%2C0:93 scaffold393 SAMTools SNP 281255 281255 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C26%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.52%2C1.9e-33%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold393 SAMTools SNP 281357 281357 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C15%2C38%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C3.6e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold393 SAMTools SNP 281375 281375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C18%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C7.2e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 282173 282173 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold393 SAMTools SNP 282402 282402 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 282936 282936 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C51%2C0:99 scaffold393 SAMTools SNP 283011 283011 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C6e-13%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold393 SAMTools SNP 283317 283317 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C33%2C0:63 scaffold393 SAMTools SNP 292007 292007 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold393 SAMTools SNP 292014 292014 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold393 SAMTools SNP 309278 309278 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 309367 309367 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 310907 310907 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 341680 341680 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold393 SAMTools SNP 342012 342012 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C0%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold393 SAMTools SNP 342764 342764 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 343097 343097 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold393 SAMTools SNP 343232 343232 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold393 SAMTools SNP 343241 343241 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold393 SAMTools SNP 344041 344041 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 345126 345126 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 358533 358533 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold393 SAMTools SNP 358789 358789 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold393 SAMTools SNP 362443 362443 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold393 SAMTools SNP 375530 375530 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C3%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold393 SAMTools SNP 375559 375559 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C2%2C29%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.26%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold393 SAMTools SNP 376100 376100 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold393 SAMTools SNP 390081 390081 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 390264 390264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 392191 392191 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D31%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C96%2C0:99 scaffold393 SAMTools SNP 392473 392473 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D32%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C36%2C0:69 scaffold393 SAMTools SNP 397205 397205 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 406172 406172 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold393 SAMTools SNP 406816 406816 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.9e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold393 SAMTools SNP 406842 406842 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C123%2C0:99 scaffold393 SAMTools SNP 407667 407667 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C60%2C0:99 scaffold393 SAMTools SNP 407799 407799 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 408219 408219 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.58%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold393 SAMTools SNP 409167 409167 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold393 SAMTools SNP 410545 410545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C71%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold393 SAMTools SNP 411146 411146 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C63%2C0:99 scaffold393 SAMTools SNP 411178 411178 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C201:70 scaffold393 SAMTools SNP 411709 411709 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.5e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C110:43 scaffold393 SAMTools SNP 412162 412162 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C35:38 scaffold393 SAMTools SNP 415189 415189 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C7%3BMQ%3D48%3BFQ%3D177%3BPV4%3D0.42%2C0.13%2C0.022%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold393 SAMTools SNP 418936 418936 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold393 SAMTools SNP 421173 421173 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C244:99 scaffold393 SAMTools SNP 422769 422769 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold393 SAMTools SNP 423325 423325 206 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold393 SAMTools SNP 423373 423373 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold393 SAMTools SNP 423636 423636 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D47%3BFQ%3D75%3BPV4%3D1%2C1%2C0.26%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C102:99 scaffold393 SAMTools SNP 423647 423647 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.0012%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold393 SAMTools SNP 424507 424507 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold393 SAMTools SNP 427349 427349 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D13%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C48%2C0:61 scaffold393 SAMTools SNP 429257 429257 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D47%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C191:99 scaffold393 SAMTools SNP 430594 430594 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold393 SAMTools SNP 430778 430778 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D48%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C252:99 scaffold393 SAMTools SNP 431022 431022 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold393 SAMTools SNP 431690 431690 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold393 SAMTools SNP 431922 431922 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.7e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold393 SAMTools SNP 433296 433296 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C226:99 scaffold393 SAMTools SNP 433297 433297 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C226:99 scaffold393 SAMTools SNP 433325 433325 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold393 SAMTools SNP 433770 433770 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold393 SAMTools SNP 433815 433815 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D66%2C31%2C13%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.018%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold393 SAMTools SNP 434453 434453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C7%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 434461 434461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C7%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 435007 435007 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C13%2C0:23 scaffold393 SAMTools SNP 435013 435013 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold393 SAMTools SNP 435025 435025 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.37%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold393 SAMTools SNP 435061 435061 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C24%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 436027 436027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C24%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold393 SAMTools SNP 436337 436337 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C42%2C16%2C11%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.04%2C2.8e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold393 SAMTools SNP 436508 436508 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D23.3%3BPV4%3D0.47%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C52:53 scaffold393 SAMTools SNP 438725 438725 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C41%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.35%2C3.1e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold393 SAMTools SNP 440411 440411 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C20%2C10%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold393 SAMTools SNP 440413 440413 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C20%2C10%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold393 SAMTools SNP 443104 443104 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C33%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.00063%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 448307 448307 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.013%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C194:99 scaffold393 SAMTools SNP 448320 448320 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.017%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C240:99 scaffold393 SAMTools SNP 448857 448857 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0118%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold393 SAMTools SNP 448884 448884 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.46%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 451314 451314 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.051%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold393 SAMTools SNP 451386 451386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold393 SAMTools SNP 451800 451800 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.09%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold393 SAMTools SNP 452602 452602 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 453946 453946 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold393 SAMTools SNP 455323 455323 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 456503 456503 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C51%2C10%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.1%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold393 SAMTools SNP 456558 456558 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C5%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.19%2C0.46%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold393 SAMTools SNP 456641 456641 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C20%2C11%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.79%2C1.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold393 SAMTools SNP 456714 456714 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 460116 460116 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 460411 460411 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C24%2C43%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 460450 460450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C37%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 460609 460609 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C45%2C6%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 461300 461300 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 462388 462388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 462481 462481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold393 SAMTools SNP 462487 462487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold393 SAMTools SNP 462520 462520 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C8%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0052%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold393 SAMTools SNP 463196 463196 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold393 SAMTools SNP 463204 463204 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C6%2C1%3BMQ%3D47%3BFQ%3D120%3BPV4%3D1%2C1%2C0.061%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold393 SAMTools SNP 465527 465527 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C10%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold393 SAMTools SNP 466517 466517 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C81%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C253%2C0:99 scaffold393 SAMTools SNP 470058 470058 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold393 SAMTools SNP 470224 470224 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C30:33 scaffold393 SAMTools SNP 470289 470289 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold393 SAMTools SNP 470296 470296 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold393 SAMTools SNP 470748 470748 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C121:33 scaffold393 SAMTools SNP 470845 470845 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold393 SAMTools SNP 474496 474496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D45%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold393 SAMTools SNP 474567 474567 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 474794 474794 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 474912 474912 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold393 SAMTools SNP 475287 475287 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold393 SAMTools SNP 478343 478343 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold393 SAMTools SNP 478922 478922 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold393 SAMTools SNP 479261 479261 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold393 SAMTools SNP 481006 481006 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold393 SAMTools SNP 481041 481041 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold393 SAMTools SNP 481337 481337 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold393 SAMTools SNP 484402 484402 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 485687 485687 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 488725 488725 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold393 SAMTools SNP 489068 489068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold393 SAMTools SNP 490927 490927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold393 SAMTools SNP 491391 491391 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold393 SAMTools SNP 491483 491483 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.034%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold393 SAMTools SNP 492229 492229 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.022%2C1.1e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C202:31 scaffold393 SAMTools SNP 492267 492267 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold393 SAMTools SNP 492411 492411 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold393 SAMTools SNP 494079 494079 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C12%2C0:21 scaffold393 SAMTools SNP 494465 494465 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.098%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C80:55 scaffold393 SAMTools SNP 495134 495134 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold393 SAMTools SNP 495485 495485 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 495492 495492 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold393 SAMTools SNP 495799 495799 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold393 SAMTools SNP 495913 495913 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.19%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C154:42 scaffold393 SAMTools SNP 502929 502929 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 502965 502965 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 503574 503574 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold393 SAMTools SNP 503959 503959 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C3%3BMQ%3D21%3BFQ%3D7.36%3BPV4%3D0.55%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C37:36 scaffold393 SAMTools SNP 504148 504148 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C24%2C0:45 scaffold393 SAMTools SNP 506584 506584 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D17%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C163%2C0:99 scaffold393 SAMTools SNP 510235 510235 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D13%2C3%2C15%2C0%3BMQ%3D32%3BFQ%3D3.55%3BPV4%3D0.23%2C6.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C28:31 scaffold393 SAMTools SNP 512303 512303 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C2%3BMQ%3D24%3BFQ%3D6.99%3BPV4%3D1%2C1%2C0.091%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C95:33 scaffold393 SAMTools SNP 513174 513174 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold393 SAMTools SNP 513181 513181 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold393 SAMTools SNP 513774 513774 64.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold393 SAMTools SNP 517828 517828 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold393 SAMTools SNP 517834 517834 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 518337 518337 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 518456 518456 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 520459 520459 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold393 SAMTools SNP 521114 521114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 521171 521171 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.088%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C129:99 scaffold393 SAMTools SNP 521433 521433 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold393 SAMTools SNP 522301 522301 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C190:99 scaffold393 SAMTools SNP 524767 524767 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold393 SAMTools SNP 525713 525713 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold393 SAMTools SNP 525728 525728 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold393 SAMTools SNP 525763 525763 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 526388 526388 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 526650 526650 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold393 SAMTools SNP 526802 526802 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold393 SAMTools SNP 527041 527041 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold393 SAMTools SNP 527488 527488 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 527491 527491 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold393 SAMTools SNP 527521 527521 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 527868 527868 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 527874 527874 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 528292 528292 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold393 SAMTools SNP 528313 528313 51.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold393 SAMTools SNP 530170 530170 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold393 SAMTools SNP 531317 531317 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold393 SAMTools SNP 531954 531954 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C68%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold393 SAMTools SNP 532416 532416 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C155%2C6%2C20%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.041%2C0.42%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold393 SAMTools SNP 532627 532627 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C18%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C1.7e-08%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 532647 532647 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C14%2C12%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.01%2C1e-34%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold393 SAMTools SNP 535104 535104 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C21%2C0%2C34%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1e-09%2C0.29%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold393 SAMTools SNP 542163 542163 114 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C102%2C0:99 scaffold393 SAMTools SNP 542479 542479 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0013%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C124:48 scaffold393 SAMTools SNP 542758 542758 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.21%2C6.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold393 SAMTools SNP 546550 546550 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold393 SAMTools SNP 546577 546577 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold393 SAMTools SNP 548877 548877 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C60:63 scaffold393 SAMTools SNP 549096 549096 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold393 SAMTools SNP 549348 549348 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold393 SAMTools SNP 549532 549532 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold393 SAMTools SNP 549721 549721 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 550320 550320 42.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold393 SAMTools SNP 550406 550406 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold393 SAMTools SNP 550419 550419 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.3%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold393 SAMTools SNP 550437 550437 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold393 SAMTools SNP 550626 550626 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold393 SAMTools SNP 550685 550685 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold393 SAMTools SNP 551108 551108 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold393 SAMTools SNP 551160 551160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold393 SAMTools SNP 551918 551918 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 552302 552302 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold393 SAMTools SNP 553937 553937 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold393 SAMTools SNP 555662 555662 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C151:77 scaffold393 SAMTools SNP 560480 560480 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold393 SAMTools SNP 560503 560503 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.16%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C113:57 scaffold393 SAMTools SNP 562030 562030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold393 SAMTools SNP 563644 563644 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold393 SAMTools SNP 567140 567140 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 567165 567165 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 567201 567201 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 568184 568184 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold393 SAMTools SNP 569855 569855 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 573219 573219 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 587067 587067 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold393 SAMTools SNP 594355 594355 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold393 SAMTools SNP 594430 594430 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C24%2C37%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 596080 596080 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold393 SAMTools SNP 596173 596173 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 596218 596218 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold393 SAMTools SNP 596476 596476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold393 SAMTools SNP 599780 599780 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold393 SAMTools SNP 599801 599801 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D7.5e-07%2C0.17%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold393 SAMTools SNP 600638 600638 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D4.4e-05%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold393 SAMTools SNP 600690 600690 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.41%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold393 SAMTools SNP 600974 600974 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C11%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold393 SAMTools SNP 601061 601061 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.69%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold393 SAMTools SNP 601641 601641 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold393 SAMTools SNP 603462 603462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.44%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 604853 604853 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.043%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C239:99 scaffold393 SAMTools SNP 608769 608769 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 615259 615259 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold393 SAMTools SNP 615334 615334 206 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C24%2C0:45 scaffold393 SAMTools SNP 615369 615369 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold393 SAMTools SNP 615691 615691 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold393 SAMTools SNP 617452 617452 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C0%2C17%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.00021%2C1%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold393 SAMTools SNP 617475 617475 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold393 SAMTools SNP 617682 617682 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C93%2C0:99 scaffold393 SAMTools SNP 623672 623672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 625699 625699 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 627168 627168 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C72%2C0:99 scaffold393 SAMTools SNP 628433 628433 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C211%2C0:99 scaffold393 SAMTools SNP 644760 644760 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.43%2C2.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C71:73 scaffold393 SAMTools SNP 651830 651830 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold393 SAMTools SNP 652678 652678 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C50%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold393 SAMTools SNP 652847 652847 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 654156 654156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C62%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold393 SAMTools SNP 654205 654205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold393 SAMTools SNP 657679 657679 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold393 SAMTools SNP 670092 670092 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold393 SAMTools SNP 670546 670546 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.015%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C229:84 scaffold393 SAMTools SNP 670938 670938 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold393 SAMTools SNP 679835 679835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold393 SAMTools SNP 680678 680678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 680977 680977 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold393 SAMTools SNP 689727 689727 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold393 SAMTools SNP 700972 700972 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold393 SAMTools SNP 703855 703855 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 703858 703858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 705451 705451 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold393 SAMTools SNP 706072 706072 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C15%2C0:27 scaffold393 SAMTools SNP 713761 713761 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold393 SAMTools SNP 722306 722306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold393 SAMTools SNP 722479 722479 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C13%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold393 SAMTools SNP 723515 723515 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C30%2C0:57 scaffold393 SAMTools SNP 734565 734565 7.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5039%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-9.56%3BPV4%3D1%2C9.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C18:23 scaffold393 SAMTools SNP 735593 735593 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C16%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.55%2C2.7e-21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C88:91 scaffold393 SAMTools SNP 766319 766319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 766333 766333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 767027 767027 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 804083 804083 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C60%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.54%2C7.9e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C221:73 scaffold393 SAMTools SNP 804176 804176 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C8%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.13%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 804924 804924 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C60%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 804990 804990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.03%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 805330 805330 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C4%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.036%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold393 SAMTools SNP 805354 805354 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C36%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0012%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold393 SAMTools SNP 806534 806534 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold393 SAMTools SNP 806558 806558 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold393 SAMTools SNP 806573 806573 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 806607 806607 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 807154 807154 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold393 SAMTools SNP 809781 809781 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold393 SAMTools SNP 809826 809826 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold393 SAMTools SNP 810364 810364 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C54%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C242:99 scaffold393 SAMTools SNP 810910 810910 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C3%2C26%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold393 SAMTools SNP 810922 810922 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C59%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.05%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 810928 810928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C9%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 811213 811213 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C11%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 811228 811228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C53%2C10%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 811243 811243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 813735 813735 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C202%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 813767 813767 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 815777 815777 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold393 SAMTools SNP 815792 815792 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold393 SAMTools SNP 815795 815795 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold393 SAMTools SNP 821763 821763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 840132 840132 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold393 SAMTools SNP 840150 840150 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C18%2C0:33 scaffold393 SAMTools SNP 840179 840179 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.011%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C88:59 scaffold393 SAMTools SNP 896889 896889 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold393 SAMTools SNP 896898 896898 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold393 SAMTools SNP 896946 896946 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold393 SAMTools SNP 901919 901919 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold393 SAMTools SNP 906356 906356 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold393 SAMTools SNP 909625 909625 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C78:43 scaffold393 SAMTools SNP 909629 909629 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold393 SAMTools SNP 909660 909660 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 909962 909962 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold393 SAMTools SNP 909971 909971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 910395 910395 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 910455 910455 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 911134 911134 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C41%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold393 SAMTools SNP 912926 912926 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.25%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold393 SAMTools SNP 912950 912950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold393 SAMTools SNP 913001 913001 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold393 SAMTools SNP 918526 918526 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold393 SAMTools SNP 922550 922550 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold393 SAMTools SNP 927151 927151 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 930444 930444 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold393 SAMTools SNP 966456 966456 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold393 SAMTools SNP 967032 967032 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold393 SAMTools SNP 1018557 1018557 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold393 SAMTools SNP 1018603 1018603 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C29:32 scaffold393 SAMTools SNP 1021224 1021224 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold393 SAMTools SNP 1022585 1022585 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold393 SAMTools SNP 1022636 1022636 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1023068 1023068 25.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold393 SAMTools SNP 1023107 1023107 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold393 SAMTools SNP 1023690 1023690 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold393 SAMTools SNP 1025828 1025828 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1025874 1025874 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold393 SAMTools SNP 1025882 1025882 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold393 SAMTools SNP 1026134 1026134 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold393 SAMTools SNP 1026295 1026295 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold393 SAMTools SNP 1026325 1026325 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold393 SAMTools SNP 1026330 1026330 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold393 SAMTools SNP 1028708 1028708 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold393 SAMTools SNP 1028741 1028741 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold393 SAMTools SNP 1028789 1028789 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold393 SAMTools SNP 1028814 1028814 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold393 SAMTools SNP 1029227 1029227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1030657 1030657 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold393 SAMTools SNP 1034221 1034221 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1034946 1034946 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold393 SAMTools SNP 1035978 1035978 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold393 SAMTools SNP 1037976 1037976 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold393 SAMTools SNP 1039093 1039093 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1039099 1039099 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold393 SAMTools SNP 1039409 1039409 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold393 SAMTools SNP 1069768 1069768 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1072544 1072544 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1072547 1072547 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1072923 1072923 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1072979 1072979 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold393 SAMTools SNP 1073133 1073133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold393 SAMTools SNP 1073669 1073669 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 1073762 1073762 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold393 SAMTools SNP 1075638 1075638 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold393 SAMTools SNP 1077475 1077475 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold393 SAMTools SNP 1077496 1077496 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold393 SAMTools SNP 1077867 1077867 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold393 SAMTools SNP 1078368 1078368 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold393 SAMTools SNP 1078854 1078854 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold393 SAMTools SNP 1083291 1083291 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold393 SAMTools SNP 1083318 1083318 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C150:99 scaffold393 SAMTools SNP 1083494 1083494 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.026%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold393 SAMTools SNP 1083520 1083520 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold393 SAMTools SNP 1083795 1083795 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold393 SAMTools SNP 1083828 1083828 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1085508 1085508 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.6%2C2.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C190:74 scaffold393 SAMTools SNP 1087922 1087922 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.17%2C0.012%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C144:99 scaffold393 SAMTools SNP 1087923 1087923 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.5%2C0.068%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C192:62 scaffold393 SAMTools SNP 1088362 1088362 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 1088365 1088365 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold393 SAMTools SNP 1088452 1088452 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C12%2C45%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C2.7e-10%2C0.099%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1089158 1089158 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C4%2C12%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.00016%2C2.3e-07%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold393 SAMTools SNP 1089185 1089185 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C23%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1091397 1091397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1093060 1093060 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D90%2C38%2C29%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00018%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold393 SAMTools SNP 1093172 1093172 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C68%2C0%2C39%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.3%2C3.8e-20%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold393 SAMTools SNP 1094383 1094383 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold393 SAMTools SNP 1094399 1094399 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold393 SAMTools SNP 1108046 1108046 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.14%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold393 SAMTools SNP 1108420 1108420 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold393 SAMTools SNP 1109095 1109095 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold393 SAMTools SNP 1109182 1109182 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.2%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C225:99 scaffold393 SAMTools SNP 1109200 1109200 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold393 SAMTools SNP 1109395 1109395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold393 SAMTools SNP 1109529 1109529 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.033%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold393 SAMTools SNP 1110408 1110408 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C12%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold393 SAMTools SNP 1115893 1115893 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C68:30 scaffold393 SAMTools SNP 1116073 1116073 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C24%2C0:45 scaffold393 SAMTools SNP 1116380 1116380 32.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold393 SAMTools SNP 1117057 1117057 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold393 SAMTools SNP 1118449 1118449 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C56%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.21%2C0.08%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C194:99 scaffold393 SAMTools SNP 1122448 1122448 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold393 SAMTools SNP 1123989 1123989 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C15%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.047%2C1e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold393 SAMTools SNP 1124001 1124001 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1124031 1124031 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.19%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1124807 1124807 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.22%2C0.41%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C144:99 scaffold393 SAMTools SNP 1124837 1124837 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C11%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold393 SAMTools SNP 1125569 1125569 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold393 SAMTools SNP 1125578 1125578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold393 SAMTools SNP 1125928 1125928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold393 SAMTools SNP 1126006 1126006 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold393 SAMTools SNP 1126156 1126156 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1126896 1126896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold393 SAMTools SNP 1126938 1126938 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1.3e-36%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1127841 1127841 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.19%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold393 SAMTools SNP 1128666 1128666 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.1e-10%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C154:48 scaffold393 SAMTools SNP 1129560 1129560 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C69%2C0:99 scaffold393 SAMTools SNP 1129731 1129731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 1129839 1129839 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.12%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C160:51 scaffold393 SAMTools SNP 1132071 1132071 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold393 SAMTools SNP 1132110 1132110 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold393 SAMTools SNP 1132585 1132585 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold393 SAMTools SNP 1132668 1132668 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold393 SAMTools SNP 1141963 1141963 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold393 SAMTools SNP 1141972 1141972 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold393 SAMTools SNP 1142175 1142175 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold393 SAMTools SNP 1142940 1142940 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C6%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D3.8e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold393 SAMTools SNP 1143542 1143542 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.039%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold393 SAMTools SNP 1145343 1145343 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C15%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.46%2C3.4e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C243:99 scaffold393 SAMTools SNP 1147006 1147006 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold393 SAMTools SNP 1149183 1149183 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C43%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold393 SAMTools SNP 1155329 1155329 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold393 SAMTools SNP 1156016 1156016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold393 SAMTools SNP 1158997 1158997 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C144%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 1159111 1159111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 1159782 1159782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1159837 1159837 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold393 SAMTools SNP 1160253 1160253 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.16%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold393 SAMTools SNP 1160259 1160259 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.085%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold393 SAMTools SNP 1160328 1160328 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold393 SAMTools SNP 1160627 1160627 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold393 SAMTools SNP 1161265 1161265 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.00074%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold393 SAMTools SNP 1161669 1161669 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold393 SAMTools SNP 1161708 1161708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold393 SAMTools SNP 1161732 1161732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold393 SAMTools SNP 1162735 1162735 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold393 SAMTools SNP 1163563 1163563 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold393 SAMTools SNP 1164150 1164150 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C8%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1164337 1164337 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold393 SAMTools SNP 1164385 1164385 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold393 SAMTools SNP 1164391 1164391 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold393 SAMTools SNP 1164593 1164593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold393 SAMTools SNP 1164737 1164737 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold393 SAMTools SNP 1164767 1164767 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C0%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1.5e-08%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold393 SAMTools SNP 1164992 1164992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C42%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1166435 1166435 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C0%2C43%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-07%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold393 SAMTools SNP 1166480 1166480 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C21%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0001%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold393 SAMTools SNP 1166483 1166483 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 1167098 1167098 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold393 SAMTools SNP 1167188 1167188 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C27%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.6%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold393 SAMTools SNP 1168013 1168013 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold393 SAMTools SNP 1168353 1168353 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold393 SAMTools SNP 1168371 1168371 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold393 SAMTools SNP 1168398 1168398 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C198:99 scaffold393 SAMTools SNP 1174541 1174541 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold393 SAMTools SNP 1194263 1194263 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold393 SAMTools SNP 1199904 1199904 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold39316 SAMTools SNP 4646 4646 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39316 SAMTools SNP 5153 5153 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold39316 SAMTools SNP 5180 5180 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39316 SAMTools SNP 5186 5186 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39316 SAMTools SNP 6557 6557 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39316 SAMTools SNP 6870 6870 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39316 SAMTools SNP 6945 6945 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold39316 SAMTools SNP 8606 8606 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold39316 SAMTools SNP 8704 8704 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39316 SAMTools SNP 9122 9122 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.096%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold39316 SAMTools SNP 9317 9317 70.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C12%2C0:21 scaffold39316 SAMTools SNP 9522 9522 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.46%2C0.0021%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold39316 SAMTools SNP 10057 10057 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C134:46 scaffold39316 SAMTools SNP 10089 10089 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39316 SAMTools SNP 10105 10105 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39316 SAMTools SNP 14419 14419 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39316 SAMTools SNP 14459 14459 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39316 SAMTools SNP 16029 16029 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39316 SAMTools SNP 24439 24439 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39316 SAMTools SNP 27119 27119 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39316 SAMTools SNP 37472 37472 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39320 SAMTools SNP 38944 38944 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39320 SAMTools SNP 38971 38971 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39320 SAMTools SNP 39079 39079 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold39320 SAMTools SNP 40612 40612 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold39320 SAMTools SNP 41950 41950 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold39326 SAMTools SNP 41927 41927 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39334 SAMTools SNP 25104 25104 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold39334 SAMTools SNP 26846 26846 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39334 SAMTools SNP 27818 27818 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39334 SAMTools SNP 28663 28663 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39334 SAMTools SNP 28673 28673 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.44%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C149:99 scaffold39334 SAMTools SNP 29648 29648 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.49%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold39334 SAMTools SNP 29693 29693 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold39334 SAMTools SNP 29981 29981 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold39334 SAMTools SNP 30046 30046 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C33%2C0:63 scaffold39334 SAMTools SNP 51731 51731 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39334 SAMTools SNP 57403 57403 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39346 SAMTools SNP 23 23 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39346 SAMTools SNP 102 102 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39346 SAMTools SNP 131 131 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39346 SAMTools SNP 173 173 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39346 SAMTools SNP 69372 69372 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold39352 SAMTools SNP 2304 2304 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39352 SAMTools SNP 2415 2415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39352 SAMTools SNP 39522 39522 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold39358 SAMTools SNP 2452 2452 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39358 SAMTools SNP 2465 2465 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold39358 SAMTools SNP 8256 8256 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C24%2C0:45 scaffold39358 SAMTools SNP 36466 36466 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39358 SAMTools SNP 36485 36485 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold39358 SAMTools SNP 36716 36716 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.15%2C0.00033%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold39358 SAMTools SNP 36722 36722 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold39358 SAMTools SNP 36898 36898 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39358 SAMTools SNP 36923 36923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39358 SAMTools SNP 36958 36958 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39358 SAMTools SNP 37079 37079 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39358 SAMTools SNP 38098 38098 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C42%2C0:81 scaffold39358 SAMTools SNP 41487 41487 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39358 SAMTools SNP 41509 41509 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39358 SAMTools SNP 41516 41516 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39358 SAMTools SNP 41527 41527 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39364 SAMTools SNP 4601 4601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39364 SAMTools SNP 4655 4655 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39364 SAMTools SNP 7079 7079 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39364 SAMTools SNP 8885 8885 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold39364 SAMTools SNP 10039 10039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D950%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C656%2C193%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39364 SAMTools SNP 12595 12595 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold39364 SAMTools SNP 14521 14521 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold39364 SAMTools SNP 17188 17188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39364 SAMTools SNP 17404 17404 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0002%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold39364 SAMTools SNP 19076 19076 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C255%2C0:99 scaffold39364 SAMTools SNP 20405 20405 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C21%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.021%2C8.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold39364 SAMTools SNP 20857 20857 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C72%2C0:99 scaffold39364 SAMTools SNP 22083 22083 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C120%2C0:99 scaffold39364 SAMTools SNP 23528 23528 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C22%2C2%2C17%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1.1e-06%2C1.6e-07%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold39364 SAMTools SNP 23838 23838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39364 SAMTools SNP 27917 27917 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold39364 SAMTools SNP 27941 27941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39364 SAMTools SNP 28028 28028 104 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C24%2C15%2C133%2C0%2C130:16 scaffold39364 SAMTools SNP 28058 28058 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold39364 SAMTools SNP 29691 29691 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39364 SAMTools SNP 29758 29758 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39364 SAMTools SNP 30916 30916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39364 SAMTools SNP 30976 30976 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39364 SAMTools SNP 31150 31150 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C20:23 scaffold39364 SAMTools SNP 31168 31168 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold39364 SAMTools SNP 33330 33330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C149%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39364 SAMTools SNP 33341 33341 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C36%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold39364 SAMTools SNP 33545 33545 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39364 SAMTools SNP 34633 34633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C30%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39364 SAMTools SNP 37090 37090 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D32%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C3%2C0:6 scaffold39364 SAMTools SNP 37187 37187 64.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold39364 SAMTools SNP 37362 37362 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39364 SAMTools SNP 37612 37612 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold39364 SAMTools SNP 37999 37999 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold39364 SAMTools SNP 38414 38414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39364 SAMTools SNP 39604 39604 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39364 SAMTools SNP 39667 39667 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39364 SAMTools SNP 39709 39709 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39364 SAMTools SNP 39730 39730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39364 SAMTools SNP 39918 39918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39364 SAMTools SNP 40212 40212 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.5%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold39364 SAMTools SNP 40243 40243 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C232:99 scaffold39364 SAMTools SNP 41038 41038 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39364 SAMTools SNP 41360 41360 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39364 SAMTools SNP 41414 41414 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold39364 SAMTools SNP 41438 41438 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold39364 SAMTools SNP 41456 41456 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold39364 SAMTools SNP 41460 41460 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold39364 SAMTools SNP 42340 42340 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold39364 SAMTools SNP 42352 42352 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold39364 SAMTools SNP 42383 42383 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold39364 SAMTools SNP 42582 42582 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold39364 SAMTools SNP 44601 44601 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.11%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39364 SAMTools SNP 44915 44915 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39364 SAMTools SNP 44981 44981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39364 SAMTools SNP 45521 45521 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold39364 SAMTools SNP 46056 46056 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold39364 SAMTools SNP 46491 46491 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39364 SAMTools SNP 46524 46524 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C202:99 scaffold39364 SAMTools SNP 47805 47805 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold39364 SAMTools SNP 47830 47830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39364 SAMTools SNP 47859 47859 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold39366 SAMTools SNP 11239 11239 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold39366 SAMTools SNP 30265 30265 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39366 SAMTools SNP 45400 45400 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39366 SAMTools SNP 45416 45416 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39366 SAMTools SNP 46221 46221 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39366 SAMTools SNP 54618 54618 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39366 SAMTools SNP 55941 55941 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold39366 SAMTools SNP 56058 56058 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39366 SAMTools SNP 56338 56338 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold39366 SAMTools SNP 56975 56975 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39366 SAMTools SNP 57024 57024 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39366 SAMTools SNP 63300 63300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39368 SAMTools SNP 2993 2993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39368 SAMTools SNP 4938 4938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39368 SAMTools SNP 5406 5406 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold39368 SAMTools SNP 5412 5412 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold39368 SAMTools SNP 8396 8396 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 8456 8456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C56%2C32%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 9394 9394 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C16%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 10738 10738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C36%2C35%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 11207 11207 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C1%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold39368 SAMTools SNP 11216 11216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39368 SAMTools SNP 11294 11294 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C10%2C78%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 14422 14422 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C0%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C1%2C1%2C2.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39368 SAMTools SNP 15476 15476 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C15%2C32%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold39368 SAMTools SNP 17392 17392 12 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold39368 SAMTools SNP 21860 21860 20.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold39368 SAMTools SNP 23121 23121 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39368 SAMTools SNP 25453 25453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39368 SAMTools SNP 29205 29205 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39368 SAMTools SNP 29237 29237 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold39368 SAMTools SNP 29617 29617 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold39368 SAMTools SNP 31467 31467 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold39368 SAMTools SNP 32114 32114 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C169:99 scaffold39368 SAMTools SNP 32589 32589 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold39368 SAMTools SNP 32598 32598 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39368 SAMTools SNP 32622 32622 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C17%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C3e-18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C162:99 scaffold39368 SAMTools SNP 32682 32682 18.1 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C51%2C0%2C47%2C10%2C35:66 scaffold39368 SAMTools SNP 32790 32790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39368 SAMTools SNP 33055 33055 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.47%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold39368 SAMTools SNP 33457 33457 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39368 SAMTools SNP 34095 34095 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39368 SAMTools SNP 34143 34143 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold39368 SAMTools SNP 34149 34149 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold39368 SAMTools SNP 34474 34474 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39368 SAMTools SNP 34516 34516 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold39368 SAMTools SNP 34534 34534 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold39368 SAMTools SNP 35339 35339 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold39368 SAMTools SNP 35369 35369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0097%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold39368 SAMTools SNP 36136 36136 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C16%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold39368 SAMTools SNP 36163 36163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39368 SAMTools SNP 36436 36436 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold39368 SAMTools SNP 36775 36775 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold39368 SAMTools SNP 36910 36910 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39368 SAMTools SNP 36934 36934 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39368 SAMTools SNP 37322 37322 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39368 SAMTools SNP 37382 37382 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold39368 SAMTools SNP 37732 37732 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00012%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold39368 SAMTools SNP 38206 38206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39368 SAMTools SNP 38262 38262 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39368 SAMTools SNP 38325 38325 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold39368 SAMTools SNP 38802 38802 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39368 SAMTools SNP 40565 40565 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39368 SAMTools SNP 40595 40595 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39368 SAMTools SNP 41074 41074 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C18%2C0:33 scaffold39368 SAMTools SNP 41910 41910 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold39368 SAMTools SNP 42240 42240 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.095%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold39368 SAMTools SNP 42247 42247 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold39368 SAMTools SNP 42274 42274 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold39368 SAMTools SNP 42294 42294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold39368 SAMTools SNP 42319 42319 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold39368 SAMTools SNP 43351 43351 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39368 SAMTools SNP 44166 44166 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D34%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C97:93 scaffold39368 SAMTools SNP 44307 44307 7.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D28%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C57%2C0:53 scaffold39368 SAMTools SNP 46330 46330 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold39368 SAMTools SNP 58681 58681 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold39368 SAMTools SNP 58722 58722 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold39380 SAMTools SNP 1508 1508 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold39380 SAMTools SNP 1514 1514 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.33%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39380 SAMTools SNP 1688 1688 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold39380 SAMTools SNP 10922 10922 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39380 SAMTools SNP 14288 14288 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39384 SAMTools SNP 49526 49526 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39384 SAMTools SNP 49770 49770 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39390 SAMTools SNP 6857 6857 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 6863 6863 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 11924 11924 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold39390 SAMTools SNP 12253 12253 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.026%2C0.0006%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold39390 SAMTools SNP 12625 12625 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C4%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold39390 SAMTools SNP 12824 12824 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C13%2C28%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0075%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold39390 SAMTools SNP 13064 13064 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C67%2C0%2C43%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold39390 SAMTools SNP 13227 13227 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold39390 SAMTools SNP 13662 13662 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C2%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold39390 SAMTools SNP 17174 17174 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39390 SAMTools SNP 18699 18699 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39390 SAMTools SNP 18747 18747 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.2%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C38:41 scaffold39390 SAMTools SNP 18809 18809 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold39390 SAMTools SNP 18825 18825 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold39390 SAMTools SNP 19469 19469 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39390 SAMTools SNP 19478 19478 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39390 SAMTools SNP 19532 19532 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C67:43 scaffold39390 SAMTools SNP 20056 20056 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 24741 24741 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 33335 33335 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 33449 33449 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.25%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C29:32 scaffold39390 SAMTools SNP 33497 33497 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.37%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C228:99 scaffold39390 SAMTools SNP 34902 34902 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39390 SAMTools SNP 34911 34911 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39390 SAMTools SNP 35287 35287 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.14%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold39390 SAMTools SNP 36789 36789 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold39390 SAMTools SNP 36828 36828 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.34%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold39390 SAMTools SNP 37237 37237 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C7%2C10%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.51%2C7.6e-11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold39390 SAMTools SNP 37243 37243 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.21%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold39390 SAMTools SNP 38122 38122 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39390 SAMTools SNP 38836 38836 57.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold39390 SAMTools SNP 38902 38902 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C69%2C0:99 scaffold39390 SAMTools SNP 39022 39022 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C11%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0022%2C0.00011%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold39390 SAMTools SNP 40168 40168 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39390 SAMTools SNP 40670 40670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39390 SAMTools SNP 40745 40745 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39390 SAMTools SNP 40778 40778 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C15%2C0:27 scaffold39390 SAMTools SNP 41160 41160 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C36%2C0:69 scaffold39390 SAMTools SNP 42504 42504 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold39390 SAMTools SNP 42679 42679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39390 SAMTools SNP 42984 42984 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39390 SAMTools SNP 43002 43002 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold39390 SAMTools SNP 43146 43146 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold39390 SAMTools SNP 43527 43527 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold39390 SAMTools SNP 43561 43561 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold39390 SAMTools SNP 44100 44100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39390 SAMTools SNP 44509 44509 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0018%2C6.9e-17%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C244:67 scaffold39390 SAMTools SNP 44805 44805 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold39390 SAMTools SNP 44853 44853 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold39390 SAMTools SNP 45372 45372 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold39390 SAMTools SNP 45384 45384 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold39390 SAMTools SNP 45413 45413 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39390 SAMTools SNP 45522 45522 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold39390 SAMTools SNP 45609 45609 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39390 SAMTools SNP 45624 45624 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39390 SAMTools SNP 46190 46190 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C23%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold39390 SAMTools SNP 46631 46631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C19%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.091%2C0.47%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold39390 SAMTools SNP 46643 46643 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39390 SAMTools SNP 46825 46825 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C7.8e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C147:41 scaffold39390 SAMTools SNP 47423 47423 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39390 SAMTools SNP 47677 47677 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C247:95 scaffold39390 SAMTools SNP 47761 47761 17.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold39390 SAMTools SNP 50316 50316 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C36%2C0:67 scaffold39390 SAMTools SNP 52495 52495 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C122%2C8%2C88%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.6e-148%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold39390 SAMTools SNP 57014 57014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39390 SAMTools SNP 58230 58230 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39390 SAMTools SNP 58242 58242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C93%2C7%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1.8e-06%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39390 SAMTools SNP 60912 60912 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold39390 SAMTools SNP 62831 62831 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39390 SAMTools SNP 63956 63956 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5e-07%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C107:51 scaffold39390 SAMTools SNP 63969 63969 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39390 SAMTools SNP 63978 63978 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39390 SAMTools SNP 66080 66080 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold39394 SAMTools SNP 4771 4771 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39394 SAMTools SNP 4832 4832 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39394 SAMTools SNP 60438 60438 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39394 SAMTools SNP 60451 60451 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 4483 4483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 4494 4494 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 4795 4795 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.29%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold394 SAMTools SNP 5074 5074 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold394 SAMTools SNP 5496 5496 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 5497 5497 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 6909 6909 50.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold394 SAMTools SNP 11176 11176 33.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold394 SAMTools SNP 14375 14375 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold394 SAMTools SNP 19609 19609 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6482%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3255%2C1%2C2890%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 19649 19649 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5241%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2656%2C1%2C2543%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 23951 23951 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C150:28 scaffold394 SAMTools SNP 26370 26370 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C13%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C228:99 scaffold394 SAMTools SNP 47345 47345 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold394 SAMTools SNP 48854 48854 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold394 SAMTools SNP 48887 48887 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold394 SAMTools SNP 48899 48899 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold394 SAMTools SNP 48938 48938 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold394 SAMTools SNP 48965 48965 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold394 SAMTools SNP 49764 49764 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold394 SAMTools SNP 50351 50351 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.067%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold394 SAMTools SNP 50378 50378 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold394 SAMTools SNP 50384 50384 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold394 SAMTools SNP 51080 51080 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold394 SAMTools SNP 51892 51892 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold394 SAMTools SNP 53371 53371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 53377 53377 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.085%2C0.067%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold394 SAMTools SNP 53398 53398 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold394 SAMTools SNP 53747 53747 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold394 SAMTools SNP 54409 54409 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C0.056%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold394 SAMTools SNP 54617 54617 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.41%2C0.11%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold394 SAMTools SNP 54635 54635 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.069%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 57118 57118 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold394 SAMTools SNP 57712 57712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold394 SAMTools SNP 57731 57731 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold394 SAMTools SNP 58124 58124 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C27%2C0:51 scaffold394 SAMTools SNP 58137 58137 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold394 SAMTools SNP 58650 58650 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold394 SAMTools SNP 59011 59011 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold394 SAMTools SNP 59632 59632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold394 SAMTools SNP 64264 64264 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold394 SAMTools SNP 65082 65082 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold394 SAMTools SNP 66253 66253 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold394 SAMTools SNP 66282 66282 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold394 SAMTools SNP 66345 66345 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold394 SAMTools SNP 66369 66369 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold394 SAMTools SNP 66817 66817 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 66826 66826 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 68004 68004 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold394 SAMTools SNP 68195 68195 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold394 SAMTools SNP 133024 133024 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold394 SAMTools SNP 136382 136382 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold394 SAMTools SNP 136477 136477 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 136822 136822 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold394 SAMTools SNP 160236 160236 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C2%2C44%3BMQ%3D11%3BFQ%3D14.2%3BPV4%3D1%2C0.00023%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C67:43 scaffold394 SAMTools SNP 160257 160257 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C91%3BMQ%3D9%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C255%2C0:99 scaffold394 SAMTools SNP 160683 160683 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold394 SAMTools SNP 160695 160695 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 161713 161713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold394 SAMTools SNP 161747 161747 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.24%2C0.14%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C200:99 scaffold394 SAMTools SNP 161759 161759 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 162287 162287 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold394 SAMTools SNP 162501 162501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 162799 162799 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 162818 162818 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold394 SAMTools SNP 162835 162835 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.23%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 163282 163282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold394 SAMTools SNP 163920 163920 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold394 SAMTools SNP 163980 163980 90.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C15%2C0:27 scaffold394 SAMTools SNP 164300 164300 5.29 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C6%2C34%2C0%2C31:6 scaffold394 SAMTools SNP 164796 164796 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 164934 164934 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold394 SAMTools SNP 164955 164955 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.21%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 165200 165200 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.026%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold394 SAMTools SNP 165208 165208 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C9%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.048%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold394 SAMTools SNP 165226 165226 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C9%2C6%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0028%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold394 SAMTools SNP 165716 165716 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold394 SAMTools SNP 165767 165767 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.12%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold394 SAMTools SNP 165857 165857 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold394 SAMTools SNP 167005 167005 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold394 SAMTools SNP 167053 167053 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C0.035%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold394 SAMTools SNP 168785 168785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold394 SAMTools SNP 168850 168850 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold394 SAMTools SNP 168930 168930 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C1%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.66%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold394 SAMTools SNP 168987 168987 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C1%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.098%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold394 SAMTools SNP 169600 169600 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00029%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold394 SAMTools SNP 170942 170942 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold394 SAMTools SNP 174476 174476 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 174789 174789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 174963 174963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold394 SAMTools SNP 175215 175215 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.24%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold394 SAMTools SNP 175236 175236 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C197:99 scaffold394 SAMTools SNP 175505 175505 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 175555 175555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 175625 175625 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 175997 175997 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold394 SAMTools SNP 176570 176570 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold394 SAMTools SNP 176641 176641 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C13%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.33%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold394 SAMTools SNP 182532 182532 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.53%2C4.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold394 SAMTools SNP 182934 182934 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.011%2C4.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold394 SAMTools SNP 183945 183945 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold394 SAMTools SNP 184063 184063 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.031%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold394 SAMTools SNP 184257 184257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C14%2C22%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0098%2C2.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold394 SAMTools SNP 185597 185597 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold394 SAMTools SNP 196443 196443 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C66%2C0:99 scaffold394 SAMTools SNP 196518 196518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold394 SAMTools SNP 200445 200445 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold394 SAMTools SNP 200529 200529 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold394 SAMTools SNP 206161 206161 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold394 SAMTools SNP 206544 206544 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C18%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.064%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold394 SAMTools SNP 206619 206619 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold394 SAMTools SNP 207050 207050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold394 SAMTools SNP 207068 207068 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold394 SAMTools SNP 207095 207095 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold394 SAMTools SNP 207959 207959 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 207963 207963 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.14%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold394 SAMTools SNP 207984 207984 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold394 SAMTools SNP 208662 208662 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C26%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold394 SAMTools SNP 209927 209927 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold394 SAMTools SNP 209993 209993 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold394 SAMTools SNP 210050 210050 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold394 SAMTools SNP 210497 210497 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold394 SAMTools SNP 214781 214781 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold394 SAMTools SNP 215010 215010 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold394 SAMTools SNP 215886 215886 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold394 SAMTools SNP 215889 215889 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold394 SAMTools SNP 216255 216255 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold394 SAMTools SNP 217210 217210 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold394 SAMTools SNP 217290 217290 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C54%2C0:99 scaffold394 SAMTools SNP 217340 217340 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C245:63 scaffold394 SAMTools SNP 217727 217727 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold394 SAMTools SNP 217736 217736 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold394 SAMTools SNP 219584 219584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold394 SAMTools SNP 219807 219807 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold394 SAMTools SNP 221168 221168 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold394 SAMTools SNP 224811 224811 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold394 SAMTools SNP 224841 224841 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold394 SAMTools SNP 224862 224862 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold394 SAMTools SNP 225165 225165 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold394 SAMTools SNP 225722 225722 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 226186 226186 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.015%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C166:52 scaffold394 SAMTools SNP 227529 227529 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold394 SAMTools SNP 227623 227623 13.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold394 SAMTools SNP 227646 227646 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C32:35 scaffold394 SAMTools SNP 227673 227673 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.23%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold394 SAMTools SNP 227690 227690 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold394 SAMTools SNP 227717 227717 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold394 SAMTools SNP 228326 228326 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold394 SAMTools SNP 229032 229032 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.47%2C0.17%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C69:72 scaffold394 SAMTools SNP 229101 229101 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold394 SAMTools SNP 229128 229128 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold394 SAMTools SNP 234371 234371 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 236933 236933 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 237101 237101 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 237116 237116 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold394 SAMTools SNP 248870 248870 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C66:69 scaffold394 SAMTools SNP 254312 254312 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.55%2C1%2C1%2C6.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold394 SAMTools SNP 254373 254373 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C5%3BMQ%3D43%3BFQ%3D87%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C114:99 scaffold394 SAMTools SNP 255591 255591 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D47%3BFQ%3D92%3BPV4%3D1%2C0.14%2C0.24%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C119:99 scaffold394 SAMTools SNP 258350 258350 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 263002 263002 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D4.76%3BPV4%3D1%2C8.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C53:28 scaffold394 SAMTools SNP 263106 263106 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D718%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D0.4%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C35:38 scaffold394 SAMTools SNP 263214 263214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1555%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D500%2C267%2C95%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-12%2C5.9e-24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 263603 263603 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C66%2C155%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C4.7e-161%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 263668 263668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 263723 263723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 263729 263729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C166%2C46%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.12%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 264929 264929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1904%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C397%2C1205%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 266088 266088 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1360%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C697%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 266616 266616 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C48%2C19%2C40%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.85%2C1.3e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold394 SAMTools SNP 269221 269221 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C18%2C2%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C7.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold394 SAMTools SNP 269337 269337 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.59%2C1.3e-12%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C234:56 scaffold394 SAMTools SNP 269807 269807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold394 SAMTools SNP 272003 272003 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.26%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C242:99 scaffold394 SAMTools SNP 272021 272021 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold394 SAMTools SNP 272355 272355 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 272415 272415 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold394 SAMTools SNP 273703 273703 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.3%2C8.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold394 SAMTools SNP 277648 277648 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold394 SAMTools SNP 279033 279033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 279072 279072 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 280492 280492 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C200:99 scaffold394 SAMTools SNP 280896 280896 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold394 SAMTools SNP 281399 281399 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold394 SAMTools SNP 281442 281442 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold394 SAMTools SNP 298510 298510 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 299457 299457 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold394 SAMTools SNP 299496 299496 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold394 SAMTools SNP 299520 299520 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 299751 299751 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold394 SAMTools SNP 302785 302785 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 302938 302938 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold394 SAMTools SNP 302955 302955 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold394 SAMTools SNP 305879 305879 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.014%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C210:30 scaffold394 SAMTools SNP 306601 306601 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 306664 306664 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.17%2C2.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold394 SAMTools SNP 306773 306773 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.47%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold394 SAMTools SNP 309484 309484 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold394 SAMTools SNP 309486 309486 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold394 SAMTools SNP 310714 310714 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.12%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold394 SAMTools SNP 310717 310717 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold394 SAMTools SNP 318852 318852 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C175:99 scaffold394 SAMTools SNP 318861 318861 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold394 SAMTools SNP 324464 324464 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.46%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold394 SAMTools SNP 324493 324493 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold394 SAMTools SNP 324516 324516 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold394 SAMTools SNP 324534 324534 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold394 SAMTools SNP 325473 325473 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold394 SAMTools SNP 325504 325504 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 325755 325755 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold394 SAMTools SNP 326175 326175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold394 SAMTools SNP 329530 329530 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 329563 329563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 330660 330660 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C4%2C15%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.079%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold394 SAMTools SNP 333256 333256 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.56%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold394 SAMTools SNP 333485 333485 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold394 SAMTools SNP 333509 333509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold394 SAMTools SNP 334479 334479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold394 SAMTools SNP 334548 334548 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold394 SAMTools SNP 334690 334690 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold394 SAMTools SNP 336220 336220 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold394 SAMTools SNP 342536 342536 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.49%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold394 SAMTools SNP 342548 342548 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.23%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold394 SAMTools SNP 342553 342553 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold394 SAMTools SNP 343497 343497 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.2%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold394 SAMTools SNP 343520 343520 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C20%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold394 SAMTools SNP 349568 349568 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.038%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C224:84 scaffold394 SAMTools SNP 353811 353811 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 354571 354571 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 354602 354602 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 357385 357385 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 357400 357400 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold394 SAMTools SNP 357841 357841 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold394 SAMTools SNP 357856 357856 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold394 SAMTools SNP 358007 358007 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold394 SAMTools SNP 358274 358274 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold394 SAMTools SNP 358279 358279 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 365250 365250 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 367520 367520 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 367775 367775 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C163%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 367787 367787 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 368015 368015 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold394 SAMTools SNP 368039 368039 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold394 SAMTools SNP 368380 368380 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold394 SAMTools SNP 369062 369062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 369117 369117 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 369272 369272 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C211%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 369312 369312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C40%2C106%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 369594 369594 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C75%2C0%2C96%3BMQ%3D50%3BFQ%3D86%3BPV4%3D2.2e-13%2C4e-67%2C1%2C2.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold394 SAMTools SNP 369913 369913 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C0%2C13%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold394 SAMTools SNP 369930 369930 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C0%2C13%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.19%2C1%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold394 SAMTools SNP 369937 369937 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold394 SAMTools SNP 370009 370009 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C9%2C9%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold394 SAMTools SNP 370036 370036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C6%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold394 SAMTools SNP 370250 370250 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C31%2C2%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 370323 370323 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold394 SAMTools SNP 370499 370499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 370559 370559 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C18%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1.2e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C172:99 scaffold394 SAMTools SNP 373411 373411 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 381576 381576 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.51%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold394 SAMTools SNP 382380 382380 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold394 SAMTools SNP 382443 382443 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C8%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.16%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold394 SAMTools SNP 382972 382972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold394 SAMTools SNP 383638 383638 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold394 SAMTools SNP 384051 384051 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 384086 384086 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold394 SAMTools SNP 384087 384087 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C133:75 scaffold394 SAMTools SNP 384344 384344 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold394 SAMTools SNP 385966 385966 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C41%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold394 SAMTools SNP 385989 385989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold394 SAMTools SNP 386011 386011 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold394 SAMTools SNP 386073 386073 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.34%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold394 SAMTools SNP 386077 386077 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.34%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold394 SAMTools SNP 386718 386718 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 386870 386870 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C45%2C0:73 scaffold394 SAMTools SNP 387894 387894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold394 SAMTools SNP 387948 387948 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 388041 388041 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 388083 388083 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 388397 388397 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold394 SAMTools SNP 388463 388463 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 388694 388694 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold394 SAMTools SNP 388729 388729 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold394 SAMTools SNP 388730 388730 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C127:79 scaffold394 SAMTools SNP 389100 389100 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C32:31 scaffold394 SAMTools SNP 389192 389192 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 389663 389663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 389681 389681 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.045%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold394 SAMTools SNP 389699 389699 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold394 SAMTools SNP 389889 389889 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 390359 390359 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold394 SAMTools SNP 390390 390390 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 390938 390938 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 391155 391155 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold394 SAMTools SNP 391164 391164 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold394 SAMTools SNP 391431 391431 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold394 SAMTools SNP 394171 394171 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 394822 394822 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold394 SAMTools SNP 394882 394882 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold394 SAMTools SNP 394909 394909 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold394 SAMTools SNP 395094 395094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold394 SAMTools SNP 395127 395127 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.46%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C199:44 scaffold394 SAMTools SNP 395193 395193 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 395414 395414 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold394 SAMTools SNP 395477 395477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold394 SAMTools SNP 395489 395489 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold394 SAMTools SNP 395513 395513 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.22%2C0.26%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold394 SAMTools SNP 397156 397156 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C151:99 scaffold394 SAMTools SNP 397184 397184 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.52%2C0.12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C193:99 scaffold394 SAMTools SNP 397198 397198 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C144:99 scaffold394 SAMTools SNP 398069 398069 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold394 SAMTools SNP 405988 405988 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold394 SAMTools SNP 406101 406101 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold394 SAMTools SNP 408093 408093 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 408099 408099 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C14%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold394 SAMTools SNP 409015 409015 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 409546 409546 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 409573 409573 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold394 SAMTools SNP 409923 409923 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 410061 410061 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.017%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C35:38 scaffold394 SAMTools SNP 410133 410133 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold394 SAMTools SNP 410142 410142 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold394 SAMTools SNP 410423 410423 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 410459 410459 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold394 SAMTools SNP 410592 410592 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold394 SAMTools SNP 410794 410794 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold394 SAMTools SNP 411201 411201 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 411235 411235 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold394 SAMTools SNP 411380 411380 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 411823 411823 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold394 SAMTools SNP 413262 413262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold394 SAMTools SNP 413607 413607 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C75%2C0:99 scaffold394 SAMTools SNP 414105 414105 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C24%2C0:45 scaffold394 SAMTools SNP 416115 416115 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold394 SAMTools SNP 416142 416142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C9%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold394 SAMTools SNP 417552 417552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C15%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C3e-22%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 421991 421991 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C45%2C12%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1.8e-05%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold394 SAMTools SNP 432399 432399 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 450805 450805 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C25%3BMQ%3D45%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C160%2C0:99 scaffold394 SAMTools SNP 455917 455917 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold394 SAMTools SNP 455919 455919 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold394 SAMTools SNP 459504 459504 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold394 SAMTools SNP 460743 460743 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 488647 488647 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold394 SAMTools SNP 489829 489829 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C51%2C24%3BMQ%3D24%3BFQ%3D-206%3BPV4%3D0.33%2C1%2C0.031%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C179%2C0:99 scaffold394 SAMTools SNP 490323 490323 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold394 SAMTools SNP 490326 490326 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold394 SAMTools SNP 491177 491177 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D35%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C154:99 scaffold394 SAMTools SNP 491183 491183 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C42%2C0:81 scaffold394 SAMTools SNP 492283 492283 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 497700 497700 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 497775 497775 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold394 SAMTools SNP 497994 497994 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold394 SAMTools SNP 498068 498068 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold394 SAMTools SNP 500575 500575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold394 SAMTools SNP 505425 505425 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C0.023%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold394 SAMTools SNP 512731 512731 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C36%2C0:69 scaffold394 SAMTools SNP 513602 513602 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold394 SAMTools SNP 513948 513948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold394 SAMTools SNP 514022 514022 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold394 SAMTools SNP 515009 515009 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 515010 515010 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 515511 515511 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold394 SAMTools SNP 522623 522623 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.47%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold394 SAMTools SNP 522647 522647 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold394 SAMTools SNP 522912 522912 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 523190 523190 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 523577 523577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C33%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold394 SAMTools SNP 524235 524235 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C29%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold394 SAMTools SNP 524268 524268 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold394 SAMTools SNP 526418 526418 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 526487 526487 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold394 SAMTools SNP 526496 526496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold394 SAMTools SNP 528093 528093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C33%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold394 SAMTools SNP 528506 528506 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold394 SAMTools SNP 528541 528541 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold394 SAMTools SNP 528544 528544 16.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold394 SAMTools SNP 529587 529587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 530425 530425 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 530650 530650 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 530681 530681 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 530923 530923 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold394 SAMTools SNP 531007 531007 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold394 SAMTools SNP 531028 531028 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold394 SAMTools SNP 531359 531359 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 531438 531438 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold394 SAMTools SNP 531581 531581 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 531662 531662 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold394 SAMTools SNP 531671 531671 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold394 SAMTools SNP 531964 531964 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold394 SAMTools SNP 532369 532369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold394 SAMTools SNP 533092 533092 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold394 SAMTools SNP 536817 536817 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold394 SAMTools SNP 536839 536839 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold394 SAMTools SNP 538789 538789 58.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold394 SAMTools SNP 538816 538816 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold394 SAMTools SNP 540714 540714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 540727 540727 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 541077 541077 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C46%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold394 SAMTools SNP 541104 541104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C93%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.27%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 541248 541248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold394 SAMTools SNP 541692 541692 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold394 SAMTools SNP 541739 541739 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 542598 542598 52.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold394 SAMTools SNP 542746 542746 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C120%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.18%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 543220 543220 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold394 SAMTools SNP 550087 550087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold394 SAMTools SNP 550566 550566 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold394 SAMTools SNP 552051 552051 17.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C35%2C32%2C47%2C0%2C44:6 scaffold394 SAMTools SNP 552101 552101 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold394 SAMTools SNP 554043 554043 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C26:29 scaffold394 SAMTools SNP 554547 554547 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold394 SAMTools SNP 555032 555032 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 555219 555219 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold394 SAMTools SNP 555712 555712 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.17%2C2.7e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C32:35 scaffold394 SAMTools SNP 555996 555996 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C23%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold394 SAMTools SNP 556200 556200 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold394 SAMTools SNP 556566 556566 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.49%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C192:67 scaffold394 SAMTools SNP 557552 557552 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold394 SAMTools SNP 560604 560604 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.11%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold394 SAMTools SNP 560618 560618 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 563554 563554 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.0042%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold394 SAMTools SNP 563627 563627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C33%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold394 SAMTools SNP 563777 563777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold394 SAMTools SNP 564199 564199 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold394 SAMTools SNP 564456 564456 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold394 SAMTools SNP 564470 564470 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold394 SAMTools SNP 566006 566006 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold394 SAMTools SNP 566993 566993 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold394 SAMTools SNP 567024 567024 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 567068 567068 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold394 SAMTools SNP 567231 567231 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold394 SAMTools SNP 567903 567903 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold394 SAMTools SNP 568661 568661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold394 SAMTools SNP 568697 568697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold394 SAMTools SNP 569260 569260 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C62%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold394 SAMTools SNP 570226 570226 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.0049%2C2.9e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold394 SAMTools SNP 570580 570580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold394 SAMTools SNP 570589 570589 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C24%2C0:45 scaffold394 SAMTools SNP 570808 570808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold394 SAMTools SNP 570847 570847 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold394 SAMTools SNP 570898 570898 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 570931 570931 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold394 SAMTools SNP 571476 571476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold394 SAMTools SNP 572886 572886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C22%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold394 SAMTools SNP 573789 573789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C17%3BMQ%3D48%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold394 SAMTools SNP 574538 574538 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold394 SAMTools SNP 574783 574783 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold394 SAMTools SNP 575169 575169 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C24%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold394 SAMTools SNP 575635 575635 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C11%2C22%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.12%2C2e-14%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold394 SAMTools SNP 576045 576045 31.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold394 SAMTools SNP 576169 576169 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C12%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C178%2C0:99 scaffold394 SAMTools SNP 582519 582519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C1%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold394 SAMTools SNP 583025 583025 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold394 SAMTools SNP 587581 587581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold394 SAMTools SNP 589108 589108 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.46%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold394 SAMTools SNP 589109 589109 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold394 SAMTools SNP 590297 590297 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold394 SAMTools SNP 599329 599329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C3%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold394 SAMTools SNP 605424 605424 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 605472 605472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold394 SAMTools SNP 624292 624292 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold394 SAMTools SNP 624435 624435 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold394 SAMTools SNP 624811 624811 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold394 SAMTools SNP 625990 625990 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold394 SAMTools SNP 631614 631614 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold394 SAMTools SNP 631619 631619 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C226:66 scaffold394 SAMTools SNP 632730 632730 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C160:99 scaffold394 SAMTools SNP 633473 633473 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.21%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold394 SAMTools SNP 633504 633504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold394 SAMTools SNP 633871 633871 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold394 SAMTools SNP 633906 633906 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.33%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C102:99 scaffold394 SAMTools SNP 633924 633924 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold394 SAMTools SNP 639764 639764 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C12%2C0:21 scaffold394 SAMTools SNP 639903 639903 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold394 SAMTools SNP 640756 640756 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold394 SAMTools SNP 653219 653219 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold394 SAMTools SNP 653729 653729 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold394 SAMTools SNP 653733 653733 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold394 SAMTools SNP 659285 659285 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold394 SAMTools SNP 661770 661770 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 661794 661794 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold394 SAMTools SNP 661808 661808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold394 SAMTools SNP 661829 661829 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.55%2C0.42%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold394 SAMTools SNP 669023 669023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C34%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold394 SAMTools SNP 669028 669028 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold394 SAMTools SNP 669684 669684 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 671077 671077 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C5.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C180:99 scaffold394 SAMTools SNP 679496 679496 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 679513 679513 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C62:65 scaffold394 SAMTools SNP 679549 679549 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold394 SAMTools SNP 680422 680422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 700229 700229 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 700250 700250 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold394 SAMTools SNP 700259 700259 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold394 SAMTools SNP 700658 700658 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold394 SAMTools SNP 700785 700785 36.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold394 SAMTools SNP 700894 700894 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold394 SAMTools SNP 700920 700920 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold394 SAMTools SNP 704287 704287 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold394 SAMTools SNP 706240 706240 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C12%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold394 SAMTools SNP 706317 706317 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.33%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold394 SAMTools SNP 723804 723804 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold39410 SAMTools SNP 5349 5349 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold39410 SAMTools SNP 5485 5485 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39410 SAMTools SNP 11413 11413 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold39410 SAMTools SNP 11427 11427 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39410 SAMTools SNP 11747 11747 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D78.8%3BPV4%3D0.43%2C0.44%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C107:99 scaffold39410 SAMTools SNP 11750 11750 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.33%2C0.0094%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C167:33 scaffold39410 SAMTools SNP 11762 11762 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C18%2C0:33 scaffold39410 SAMTools SNP 14157 14157 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold39410 SAMTools SNP 14467 14467 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39410 SAMTools SNP 16209 16209 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39410 SAMTools SNP 16223 16223 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C8%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.079%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold39410 SAMTools SNP 21244 21244 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C13%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00081%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold39410 SAMTools SNP 22588 22588 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold39410 SAMTools SNP 26046 26046 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C1%2C22%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.51%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold39412 SAMTools SNP 28088 28088 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39412 SAMTools SNP 31323 31323 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold39412 SAMTools SNP 31511 31511 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold39412 SAMTools SNP 31523 31523 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold39412 SAMTools SNP 31604 31604 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.079%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold39412 SAMTools SNP 32121 32121 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold39412 SAMTools SNP 32677 32677 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.44%2C0.032%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C246:47 scaffold39412 SAMTools SNP 32714 32714 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.56%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold39412 SAMTools SNP 33263 33263 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold39412 SAMTools SNP 34606 34606 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold39412 SAMTools SNP 34622 34622 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold39412 SAMTools SNP 34730 34730 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C102:99 scaffold39412 SAMTools SNP 34784 34784 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold39412 SAMTools SNP 36268 36268 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39412 SAMTools SNP 38172 38172 48.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold39412 SAMTools SNP 38373 38373 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.028%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C88:70 scaffold39412 SAMTools SNP 38630 38630 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39412 SAMTools SNP 38655 38655 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39412 SAMTools SNP 38856 38856 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39412 SAMTools SNP 38898 38898 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39412 SAMTools SNP 39810 39810 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold39412 SAMTools SNP 40866 40866 52.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold39412 SAMTools SNP 42840 42840 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold39412 SAMTools SNP 43013 43013 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39412 SAMTools SNP 46923 46923 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold39412 SAMTools SNP 47118 47118 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold39412 SAMTools SNP 47139 47139 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold39412 SAMTools SNP 47153 47153 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0033%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold39412 SAMTools SNP 51343 51343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39412 SAMTools SNP 55474 55474 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.1%3BPV4%3D1%2C0%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C24:28 scaffold39412 SAMTools SNP 55502 55502 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold39412 SAMTools SNP 58623 58623 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.4%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C85:62 scaffold39412 SAMTools SNP 58840 58840 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C36%2C0:69 scaffold39412 SAMTools SNP 58941 58941 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C4%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D1%2C0.00022%2C0.035%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold39412 SAMTools SNP 59581 59581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39412 SAMTools SNP 60874 60874 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39412 SAMTools SNP 60946 60946 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39412 SAMTools SNP 61088 61088 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39412 SAMTools SNP 64941 64941 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39412 SAMTools SNP 65087 65087 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C116:99 scaffold39412 SAMTools SNP 65450 65450 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39412 SAMTools SNP 65933 65933 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39412 SAMTools SNP 66141 66141 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39412 SAMTools SNP 66701 66701 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39412 SAMTools SNP 67164 67164 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39412 SAMTools SNP 67858 67858 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold39412 SAMTools SNP 67885 67885 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold39412 SAMTools SNP 68118 68118 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39412 SAMTools SNP 68504 68504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39412 SAMTools SNP 68662 68662 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39424 SAMTools SNP 365 365 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39424 SAMTools SNP 366 366 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39424 SAMTools SNP 367 367 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39424 SAMTools SNP 1448 1448 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C2%2C15%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1.4e-06%2C1%2C0.068%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold39424 SAMTools SNP 62997 62997 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C99:37 scaffold39424 SAMTools SNP 65247 65247 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D38%3BPV4%3D1%2C1%2C0.052%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C201:68 scaffold39424 SAMTools SNP 66121 66121 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39424 SAMTools SNP 66160 66160 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D0.51%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold39424 SAMTools SNP 66224 66224 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C1%3BMQ%3D48%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold39424 SAMTools SNP 66248 66248 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C2%3BMQ%3D48%3BFQ%3D71%3BPV4%3D0.57%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold39424 SAMTools SNP 66650 66650 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold39424 SAMTools SNP 66663 66663 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.52%2C0.0078%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold39424 SAMTools SNP 67454 67454 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold39424 SAMTools SNP 70882 70882 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold39464 SAMTools SNP 4335 4335 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39464 SAMTools SNP 6361 6361 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold39464 SAMTools SNP 18873 18873 12 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold39464 SAMTools SNP 29991 29991 38.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold39464 SAMTools SNP 30598 30598 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 13745 13745 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold39470 SAMTools SNP 18880 18880 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 18897 18897 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39470 SAMTools SNP 18906 18906 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39470 SAMTools SNP 19755 19755 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold39470 SAMTools SNP 19839 19839 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39470 SAMTools SNP 25116 25116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C11%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold39470 SAMTools SNP 25452 25452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C19%2C5%3BMQ%3D46%3BFQ%3D-74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold39470 SAMTools SNP 25938 25938 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39470 SAMTools SNP 25945 25945 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39470 SAMTools SNP 35238 35238 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold39470 SAMTools SNP 35245 35245 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold39470 SAMTools SNP 38207 38207 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39470 SAMTools SNP 38234 38234 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39470 SAMTools SNP 40971 40971 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39470 SAMTools SNP 48388 48388 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 48413 48413 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 50850 50850 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 50856 50856 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 51631 51631 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39470 SAMTools SNP 51637 51637 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39470 SAMTools SNP 54931 54931 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39470 SAMTools SNP 54943 54943 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39470 SAMTools SNP 55679 55679 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold39470 SAMTools SNP 57271 57271 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold39470 SAMTools SNP 58963 58963 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39470 SAMTools SNP 62056 62056 5.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D33%3BFQ%3D-29%3BPV4%3D1%2C6.2e-07%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C2%2C0:4 scaffold39470 SAMTools SNP 63582 63582 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39470 SAMTools SNP 63643 63643 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39470 SAMTools SNP 63652 63652 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39470 SAMTools SNP 64455 64455 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39470 SAMTools SNP 64457 64457 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39470 SAMTools SNP 65588 65588 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C210:99 scaffold39470 SAMTools SNP 65632 65632 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.46%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C170:52 scaffold39470 SAMTools SNP 65633 65633 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D96.9%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C141:99 scaffold39470 SAMTools SNP 65696 65696 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C226:99 scaffold39470 SAMTools SNP 65705 65705 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.19%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold39470 SAMTools SNP 65993 65993 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39470 SAMTools SNP 66031 66031 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C57%2C0:99 scaffold39470 SAMTools SNP 67995 67995 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39470 SAMTools SNP 68000 68000 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold39470 SAMTools SNP 68474 68474 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39470 SAMTools SNP 68483 68483 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold39472 SAMTools SNP 41641 41641 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39472 SAMTools SNP 43241 43241 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold39472 SAMTools SNP 43298 43298 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39472 SAMTools SNP 43772 43772 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C1%2C14%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.34%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold39472 SAMTools SNP 43784 43784 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.058%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold39472 SAMTools SNP 44997 44997 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.16%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C117:46 scaffold39472 SAMTools SNP 45009 45009 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D44.8%3BPV4%3D0.33%2C0.0086%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C72:75 scaffold39472 SAMTools SNP 45025 45025 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.17%2C0.066%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C197:72 scaffold39472 SAMTools SNP 46270 46270 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.19%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold39472 SAMTools SNP 46315 46315 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C234:99 scaffold39472 SAMTools SNP 48103 48103 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C236:99 scaffold39472 SAMTools SNP 49267 49267 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39472 SAMTools SNP 49306 49306 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39472 SAMTools SNP 55358 55358 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold39472 SAMTools SNP 55421 55421 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold39472 SAMTools SNP 56066 56066 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39472 SAMTools SNP 57606 57606 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.027%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold39472 SAMTools SNP 60607 60607 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold39472 SAMTools SNP 60613 60613 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold39472 SAMTools SNP 62116 62116 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold39472 SAMTools SNP 62621 62621 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold39472 SAMTools SNP 62694 62694 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold39472 SAMTools SNP 64288 64288 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39472 SAMTools SNP 64304 64304 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold39482 SAMTools SNP 389 389 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39482 SAMTools SNP 404 404 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39482 SAMTools SNP 27622 27622 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39482 SAMTools SNP 27632 27632 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold39482 SAMTools SNP 47880 47880 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39488 SAMTools SNP 2881 2881 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39488 SAMTools SNP 2897 2897 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39488 SAMTools SNP 3287 3287 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold39488 SAMTools SNP 3335 3335 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold39488 SAMTools SNP 6195 6195 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0099%2C1%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold39488 SAMTools SNP 6391 6391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39488 SAMTools SNP 6726 6726 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 7534 7534 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.088%2C0.0077%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C178:99 scaffold39488 SAMTools SNP 8348 8348 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39488 SAMTools SNP 8354 8354 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.26%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39488 SAMTools SNP 9473 9473 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39488 SAMTools SNP 9530 9530 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.57%2C0.0058%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold39488 SAMTools SNP 9648 9648 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.63%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold39488 SAMTools SNP 9690 9690 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39488 SAMTools SNP 9762 9762 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold39488 SAMTools SNP 9884 9884 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C248:99 scaffold39488 SAMTools SNP 10597 10597 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold39488 SAMTools SNP 10895 10895 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C178:69 scaffold39488 SAMTools SNP 11803 11803 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39488 SAMTools SNP 12079 12079 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.41%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold39488 SAMTools SNP 12299 12299 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.34%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold39488 SAMTools SNP 12338 12338 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold39488 SAMTools SNP 12613 12613 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C1%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold39488 SAMTools SNP 12649 12649 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39488 SAMTools SNP 12994 12994 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C21%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold39488 SAMTools SNP 13008 13008 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C21%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold39488 SAMTools SNP 13526 13526 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.11%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C209:66 scaffold39488 SAMTools SNP 18338 18338 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C1%2C115%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.62%2C6.7e-188%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold39488 SAMTools SNP 18403 18403 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1757%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0027%2C1.7e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C83:86 scaffold39488 SAMTools SNP 18571 18571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1320%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C18%2C168%2C68%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D9.3e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39488 SAMTools SNP 18871 18871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39488 SAMTools SNP 18934 18934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39488 SAMTools SNP 19063 19063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39488 SAMTools SNP 19071 19071 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold39488 SAMTools SNP 19123 19123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39488 SAMTools SNP 19125 19125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold39488 SAMTools SNP 19453 19453 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D596%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D261%2C10%2C309%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 19457 19457 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D596%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D313%2C12%2C261%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 22826 22826 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39488 SAMTools SNP 27641 27641 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39488 SAMTools SNP 41727 41727 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39488 SAMTools SNP 44613 44613 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C73:43 scaffold39488 SAMTools SNP 46743 46743 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 46866 46866 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.47%2C2.5e-19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C213:42 scaffold39488 SAMTools SNP 47872 47872 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.45%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold39488 SAMTools SNP 48186 48186 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C247:42 scaffold39488 SAMTools SNP 48465 48465 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold39488 SAMTools SNP 50388 50388 13.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold39488 SAMTools SNP 50496 50496 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold39488 SAMTools SNP 52099 52099 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39488 SAMTools SNP 52297 52297 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C250:57 scaffold39488 SAMTools SNP 55355 55355 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1.3e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C242:99 scaffold39488 SAMTools SNP 60250 60250 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C26%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 60265 60265 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C43%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 60323 60323 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold39488 SAMTools SNP 60324 60324 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold39488 SAMTools SNP 60848 60848 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C20%2C147%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-09%2C6.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 60911 60911 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C342%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39488 SAMTools SNP 60971 60971 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C87%2C1%2C20%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C222:99 scaffold39488 SAMTools SNP 61302 61302 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39488 SAMTools SNP 61320 61320 9.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C12:16 scaffold39488 SAMTools SNP 61435 61435 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39488 SAMTools SNP 61440 61440 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39488 SAMTools SNP 61451 61451 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.054%2C0.49%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold39488 SAMTools SNP 63562 63562 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 63634 63634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C1%2C88%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 63930 63930 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C22%2C81%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.34%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 64262 64262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C34%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 64277 64277 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C23%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.17%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 65447 65447 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C21%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold39488 SAMTools SNP 65483 65483 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0013%2C0.085%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold39488 SAMTools SNP 65531 65531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C9%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.0037%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 65897 65897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C10%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 65938 65938 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.46%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold39488 SAMTools SNP 65939 65939 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 65990 65990 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C20%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold39488 SAMTools SNP 66244 66244 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C22%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold39488 SAMTools SNP 67259 67259 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C1%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold39488 SAMTools SNP 67263 67263 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C1%2C10%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold39488 SAMTools SNP 67557 67557 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 67560 67560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39488 SAMTools SNP 67856 67856 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.039%2C1.6e-07%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold39488 SAMTools SNP 67977 67977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold39488 SAMTools SNP 68778 68778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39488 SAMTools SNP 68793 68793 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39488 SAMTools SNP 68847 68847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold39488 SAMTools SNP 69553 69553 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold39488 SAMTools SNP 69830 69830 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39488 SAMTools SNP 69936 69936 78.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold39488 SAMTools SNP 70046 70046 55.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold39488 SAMTools SNP 70208 70208 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C166%2C0:99 scaffold39488 SAMTools SNP 70321 70321 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C45%2C0:84 scaffold39488 SAMTools SNP 70503 70503 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C66%2C0:99 scaffold39488 SAMTools SNP 71455 71455 109 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C99%2C0%2C128%2C69%2C125:99 scaffold39488 SAMTools SNP 71802 71802 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C193%2C0:99 scaffold39488 SAMTools SNP 71809 71809 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C163%2C0:99 scaffold395 SAMTools SNP 22562 22562 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 62645 62645 23.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold395 SAMTools SNP 85074 85074 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 85258 85258 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold395 SAMTools SNP 87951 87951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold395 SAMTools SNP 87954 87954 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold395 SAMTools SNP 88411 88411 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.23%2C5.9e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold395 SAMTools SNP 88710 88710 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C54%2C0:98 scaffold395 SAMTools SNP 89538 89538 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 89560 89560 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 89798 89798 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold395 SAMTools SNP 90317 90317 92.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold395 SAMTools SNP 90377 90377 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C3%3BMQ%3D45%3BFQ%3D133%3BPV4%3D0.044%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C160:99 scaffold395 SAMTools SNP 90533 90533 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold395 SAMTools SNP 92251 92251 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold395 SAMTools SNP 92290 92290 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold395 SAMTools SNP 94383 94383 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold395 SAMTools SNP 94384 94384 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold395 SAMTools SNP 94395 94395 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold395 SAMTools SNP 94464 94464 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold395 SAMTools SNP 94477 94477 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold395 SAMTools SNP 94743 94743 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold395 SAMTools SNP 94788 94788 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold395 SAMTools SNP 95467 95467 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold395 SAMTools SNP 95780 95780 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold395 SAMTools SNP 95816 95816 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold395 SAMTools SNP 95837 95837 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold395 SAMTools SNP 96234 96234 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold395 SAMTools SNP 96393 96393 51.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold395 SAMTools SNP 96408 96408 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold395 SAMTools SNP 96751 96751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold395 SAMTools SNP 96760 96760 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.042%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold395 SAMTools SNP 98239 98239 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C4%3BMQ%3D49%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold395 SAMTools SNP 98243 98243 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold395 SAMTools SNP 100855 100855 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold395 SAMTools SNP 101697 101697 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold395 SAMTools SNP 101754 101754 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold395 SAMTools SNP 112042 112042 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold395 SAMTools SNP 119309 119309 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C36%2C1%2C80%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1.2e-07%2C1.8e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold395 SAMTools SNP 119849 119849 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold395 SAMTools SNP 120222 120222 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold395 SAMTools SNP 122009 122009 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0019%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C138:30 scaffold395 SAMTools SNP 133902 133902 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold395 SAMTools SNP 134773 134773 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold395 SAMTools SNP 135277 135277 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold395 SAMTools SNP 135346 135346 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold395 SAMTools SNP 135355 135355 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.6%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold395 SAMTools SNP 144812 144812 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 144943 144943 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 144944 144944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.45%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 145005 145005 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 145278 145278 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.012%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold395 SAMTools SNP 145302 145302 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C102:99 scaffold395 SAMTools SNP 145393 145393 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C26%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.026%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold395 SAMTools SNP 145735 145735 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 145860 145860 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.43%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 145895 145895 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.55%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold395 SAMTools SNP 146087 146087 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold395 SAMTools SNP 146136 146136 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.0027%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold395 SAMTools SNP 146303 146303 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.17%2C2.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold395 SAMTools SNP 146398 146398 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold395 SAMTools SNP 146729 146729 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold395 SAMTools SNP 146751 146751 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold395 SAMTools SNP 146784 146784 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold395 SAMTools SNP 148276 148276 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C1%2C26%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold395 SAMTools SNP 148730 148730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold395 SAMTools SNP 148738 148738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C38%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 149004 149004 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 149323 149323 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D934%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D352%2C54%2C328%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 149649 149649 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold395 SAMTools SNP 149821 149821 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.02%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold395 SAMTools SNP 149861 149861 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold395 SAMTools SNP 150221 150221 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C49%2C4%2C6%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold395 SAMTools SNP 151369 151369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C45%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold395 SAMTools SNP 163408 163408 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C33%2C0:54 scaffold395 SAMTools SNP 163885 163885 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C54%2C0:99 scaffold395 SAMTools SNP 164671 164671 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C26%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C214%2C0:99 scaffold395 SAMTools SNP 164850 164850 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C42%2C0:81 scaffold395 SAMTools SNP 166484 166484 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 172170 172170 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold395 SAMTools SNP 172173 172173 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold395 SAMTools SNP 172287 172287 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold395 SAMTools SNP 172305 172305 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold395 SAMTools SNP 172311 172311 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold395 SAMTools SNP 172488 172488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold395 SAMTools SNP 172972 172972 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C31%2C0%2C25%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold395 SAMTools SNP 173202 173202 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.013%2C1%2C1%2C6.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold395 SAMTools SNP 173424 173424 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0063%2C7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold395 SAMTools SNP 174065 174065 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold395 SAMTools SNP 174113 174113 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.18%2C0.29%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C172:99 scaffold395 SAMTools SNP 174122 174122 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold395 SAMTools SNP 174143 174143 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 174148 174148 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 175374 175374 129 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C234:99 scaffold395 SAMTools SNP 175380 175380 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.018%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C236:99 scaffold395 SAMTools SNP 175387 175387 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C168:99 scaffold395 SAMTools SNP 175603 175603 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C45%2C1%2C13%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.42%2C4.2e-30%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold395 SAMTools SNP 175904 175904 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold395 SAMTools SNP 175926 175926 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold395 SAMTools SNP 175937 175937 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold395 SAMTools SNP 176039 176039 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D62.9%3BPV4%3D0.43%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C107:93 scaffold395 SAMTools SNP 176584 176584 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold395 SAMTools SNP 176975 176975 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.071%2C0.00013%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold395 SAMTools SNP 177076 177076 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C5%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.11%2C0.33%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold395 SAMTools SNP 177413 177413 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C17%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.03%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold395 SAMTools SNP 177450 177450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 177909 177909 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C32%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 179572 179572 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.63%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold395 SAMTools SNP 184256 184256 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.085%2C0.021%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold395 SAMTools SNP 184257 184257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold395 SAMTools SNP 184383 184383 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold395 SAMTools SNP 184401 184401 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.42%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold395 SAMTools SNP 184404 184404 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold395 SAMTools SNP 184410 184410 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold395 SAMTools SNP 185013 185013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C21%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 185085 185085 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C43%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.29%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold395 SAMTools SNP 185145 185145 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C8%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D6.9e-05%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold395 SAMTools SNP 185159 185159 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C9%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold395 SAMTools SNP 185371 185371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold395 SAMTools SNP 185406 185406 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold395 SAMTools SNP 185556 185556 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C1%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0035%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold395 SAMTools SNP 187111 187111 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C36%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold395 SAMTools SNP 187165 187165 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C0%2C12%3BMQ%3D49%3BFQ%3D131%3BPV4%3D0.00011%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold395 SAMTools SNP 187168 187168 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C0%2C12%3BMQ%3D49%3BFQ%3D131%3BPV4%3D0.00011%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold395 SAMTools SNP 189838 189838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C72%2C14%2C46%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.53%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 193676 193676 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.047%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold395 SAMTools SNP 193741 193741 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 194941 194941 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.7e-14%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C236:56 scaffold395 SAMTools SNP 201474 201474 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold395 SAMTools SNP 201789 201789 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C45%2C113%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D2.2e-08%2C8.6e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold395 SAMTools SNP 201990 201990 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold395 SAMTools SNP 202421 202421 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C109%2C40%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.047%2C1%2C4.2e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 203111 203111 18.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold395 SAMTools SNP 205072 205072 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold395 SAMTools SNP 206142 206142 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C20%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C6.1e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold395 SAMTools SNP 207014 207014 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold395 SAMTools SNP 212555 212555 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 215055 215055 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C73%2C47%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold395 SAMTools SNP 215124 215124 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold395 SAMTools SNP 253661 253661 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C169%2C0:99 scaffold395 SAMTools SNP 253725 253725 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C60%2C0:99 scaffold395 SAMTools SNP 253758 253758 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold395 SAMTools SNP 255442 255442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold395 SAMTools SNP 255445 255445 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.002%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C194:99 scaffold395 SAMTools SNP 255535 255535 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold395 SAMTools SNP 255547 255547 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C15%2C0:27 scaffold395 SAMTools SNP 255878 255878 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold395 SAMTools SNP 258121 258121 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold395 SAMTools SNP 278303 278303 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 278767 278767 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C3%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold395 SAMTools SNP 278776 278776 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.35%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C248:99 scaffold395 SAMTools SNP 279131 279131 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 279218 279218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C8e-14%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 279646 279646 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold395 SAMTools SNP 279696 279696 60.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold395 SAMTools SNP 280796 280796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold395 SAMTools SNP 281591 281591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C18%3BMQ%3D49%3BFQ%3D115%3BPV4%3D0.47%2C0.2%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold395 SAMTools SNP 281656 281656 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold395 SAMTools SNP 281693 281693 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold395 SAMTools SNP 282287 282287 16.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D16%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C13%2C0:21 scaffold395 SAMTools SNP 285405 285405 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold395 SAMTools SNP 285709 285709 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold395 SAMTools SNP 287345 287345 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 287360 287360 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 287423 287423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 287959 287959 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C45%2C13%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D4.7e-06%2C1.1e-11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold395 SAMTools SNP 288461 288461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 288819 288819 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold395 SAMTools SNP 290328 290328 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.0037%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C210:99 scaffold395 SAMTools SNP 290358 290358 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold395 SAMTools SNP 290640 290640 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold395 SAMTools SNP 290644 290644 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C237:87 scaffold395 SAMTools SNP 290812 290812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold395 SAMTools SNP 290821 290821 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold395 SAMTools SNP 290896 290896 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold395 SAMTools SNP 290944 290944 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C242:99 scaffold395 SAMTools SNP 292253 292253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C0%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 292288 292288 222 . . REF=T;ALT=C,G,A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0%2C222%2C9%2C216%2C250%2C50%2C186%2C247:99 scaffold395 SAMTools SNP 292294 292294 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 293605 293605 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C205:99 scaffold395 SAMTools SNP 293893 293893 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C6%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 294046 294046 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.062%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold395 SAMTools SNP 294392 294392 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C30%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D2.1e-06%2C0.5%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold395 SAMTools SNP 294398 294398 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C0.0084%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 294422 294422 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold395 SAMTools SNP 294598 294598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C59%2C3%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.016%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 294619 294619 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C3%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold395 SAMTools SNP 294665 294665 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold395 SAMTools SNP 294715 294715 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold395 SAMTools SNP 294979 294979 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C250:99 scaffold395 SAMTools SNP 295199 295199 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C1%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.23%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold395 SAMTools SNP 295204 295204 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C1%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.23%2C0.003%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold395 SAMTools SNP 295417 295417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.21%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 296023 296023 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C8%2C94%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0053%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold395 SAMTools SNP 296047 296047 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C99%2C1%2C12%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold395 SAMTools SNP 296050 296050 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C94%2C1%2C12%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold395 SAMTools SNP 296617 296617 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C8%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold395 SAMTools SNP 296626 296626 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C10%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.015%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold395 SAMTools SNP 296975 296975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C29%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 297026 297026 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C3.7e-08%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 297062 297062 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C17%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 297519 297519 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C34%2C0%2C21%3BMQ%3D50%3BFQ%3D60%3BPV4%3D5.7e-06%2C1.8e-15%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold395 SAMTools SNP 297627 297627 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 297856 297856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold395 SAMTools SNP 300171 300171 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold395 SAMTools SNP 300183 300183 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold395 SAMTools SNP 300353 300353 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold395 SAMTools SNP 317632 317632 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.08%3BPV4%3D1%2C5.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C29:32 scaffold395 SAMTools SNP 319435 319435 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold395 SAMTools SNP 319810 319810 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold395 SAMTools SNP 319852 319852 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold395 SAMTools SNP 320852 320852 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold395 SAMTools SNP 323721 323721 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C21%2C0:39 scaffold395 SAMTools SNP 323724 323724 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C63:66 scaffold395 SAMTools SNP 324343 324343 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.28%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C11:14 scaffold395 SAMTools SNP 324769 324769 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold395 SAMTools SNP 324771 324771 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold395 SAMTools SNP 324814 324814 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C139:99 scaffold395 SAMTools SNP 329407 329407 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold395 SAMTools SNP 329423 329423 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.052%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold395 SAMTools SNP 329430 329430 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C180:99 scaffold395 SAMTools SNP 333760 333760 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.25%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold395 SAMTools SNP 333778 333778 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.015%2C5.5e-05%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold395 SAMTools SNP 334985 334985 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold395 SAMTools SNP 334986 334986 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold395 SAMTools SNP 335108 335108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C32%3BMQ%3D49%3BFQ%3D-82%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold39500 SAMTools SNP 56382 56382 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39500 SAMTools SNP 56433 56433 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39500 SAMTools SNP 57009 57009 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold39500 SAMTools SNP 57032 57032 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39500 SAMTools SNP 66674 66674 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold39500 SAMTools SNP 67552 67552 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C45%2C0:87 scaffold39508 SAMTools SNP 53605 53605 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39508 SAMTools SNP 66636 66636 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39514 SAMTools SNP 2089 2089 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39514 SAMTools SNP 2092 2092 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39514 SAMTools SNP 2129 2129 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.42%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C232:99 scaffold39514 SAMTools SNP 8393 8393 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39514 SAMTools SNP 8725 8725 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold39514 SAMTools SNP 8809 8809 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold39514 SAMTools SNP 9122 9122 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold39514 SAMTools SNP 14903 14903 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold39514 SAMTools SNP 16769 16769 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold39514 SAMTools SNP 31072 31072 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39514 SAMTools SNP 31669 31669 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39514 SAMTools SNP 31762 31762 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold39514 SAMTools SNP 56189 56189 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold39522 SAMTools SNP 398 398 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39522 SAMTools SNP 3181 3181 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39522 SAMTools SNP 3189 3189 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39522 SAMTools SNP 4969 4969 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39522 SAMTools SNP 5371 5371 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39522 SAMTools SNP 8568 8568 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.023%2C3.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold39522 SAMTools SNP 9184 9184 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C11%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0077%2C3.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold39522 SAMTools SNP 9195 9195 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.061%2C1.5e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold39522 SAMTools SNP 9212 9212 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.5%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold39522 SAMTools SNP 9650 9650 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.48%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold39522 SAMTools SNP 19782 19782 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold39522 SAMTools SNP 19911 19911 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.28%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold39522 SAMTools SNP 19932 19932 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.069%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold39522 SAMTools SNP 21296 21296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold39522 SAMTools SNP 21472 21472 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold39522 SAMTools SNP 21784 21784 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39522 SAMTools SNP 21796 21796 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39522 SAMTools SNP 22357 22357 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C7%2C0%3BMQ%3D40%3BFQ%3D67%3BPV4%3D0.29%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold39522 SAMTools SNP 22434 22434 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C3%3BMQ%3D42%3BFQ%3D20.1%3BPV4%3D0.087%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold39522 SAMTools SNP 22490 22490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39522 SAMTools SNP 22691 22691 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39522 SAMTools SNP 22700 22700 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39522 SAMTools SNP 25428 25428 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 25717 25717 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 25759 25759 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 26214 26214 33.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold39522 SAMTools SNP 27351 27351 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold39522 SAMTools SNP 27375 27375 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold39522 SAMTools SNP 30026 30026 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.021%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold39522 SAMTools SNP 31064 31064 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C21%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold39522 SAMTools SNP 32346 32346 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold39522 SAMTools SNP 32432 32432 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold39522 SAMTools SNP 33867 33867 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 44936 44936 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C27%2C0:51 scaffold39522 SAMTools SNP 45048 45048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C0.46%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold39522 SAMTools SNP 45077 45077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold39522 SAMTools SNP 45594 45594 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.4%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C132:99 scaffold39522 SAMTools SNP 45619 45619 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.1%2C0.00057%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold39522 SAMTools SNP 45814 45814 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 45880 45880 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.1%2C0.0088%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold39522 SAMTools SNP 46199 46199 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39522 SAMTools SNP 48132 48132 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold39522 SAMTools SNP 48311 48311 68.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold39522 SAMTools SNP 48467 48467 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C39%2C0:75 scaffold39522 SAMTools SNP 51472 51472 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39522 SAMTools SNP 51763 51763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold39522 SAMTools SNP 51997 51997 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 52051 52051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39522 SAMTools SNP 52249 52249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39522 SAMTools SNP 52261 52261 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.33%2C0.0029%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold39522 SAMTools SNP 52591 52591 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 52860 52860 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39522 SAMTools SNP 53365 53365 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.29%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C238:99 scaffold39522 SAMTools SNP 53371 53371 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold39522 SAMTools SNP 53684 53684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold39522 SAMTools SNP 53699 53699 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold39522 SAMTools SNP 53963 53963 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold39522 SAMTools SNP 53974 53974 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39522 SAMTools SNP 54514 54514 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold39522 SAMTools SNP 54535 54535 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39522 SAMTools SNP 57627 57627 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39522 SAMTools SNP 57704 57704 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold39522 SAMTools SNP 58199 58199 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39522 SAMTools SNP 58717 58717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39522 SAMTools SNP 58925 58925 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39522 SAMTools SNP 58964 58964 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39522 SAMTools SNP 59021 59021 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold39522 SAMTools SNP 59035 59035 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39522 SAMTools SNP 60704 60704 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C88%2C0%2C52%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold39522 SAMTools SNP 60766 60766 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.27%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C240:99 scaffold39522 SAMTools SNP 60816 60816 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C214:99 scaffold39522 SAMTools SNP 61426 61426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7329%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D292%2C130%2C283%2C6366%3BMQ%3D50%3BFQ%3D-207%3BPV4%3D1.9e-246%2C1.7e-07%2C0.4%2C1.8e-53;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C0:99 scaffold39522 SAMTools SNP 61584 61584 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7405%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C3%2C182%2C7197%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D9.8e-16%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39522 SAMTools SNP 61638 61638 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2484%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D909%2C289%2C967%2C306%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.96%2C0.006%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 62251 62251 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6011%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D790%2C2024%2C761%2C2186%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.057%2C0.042%2C1.3e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 62877 62877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2331%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D502%2C708%2C202%2C297%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39522 SAMTools SNP 64383 64383 40.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold39522 SAMTools SNP 66369 66369 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C12%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C206:72 scaffold39522 SAMTools SNP 66371 66371 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.07%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C229:33 scaffold39522 SAMTools SNP 66382 66382 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold39522 SAMTools SNP 66383 66383 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39524 SAMTools SNP 1058 1058 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39524 SAMTools SNP 1123 1123 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39524 SAMTools SNP 1447 1447 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C126:99 scaffold39524 SAMTools SNP 1477 1477 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C133:77 scaffold39524 SAMTools SNP 1537 1537 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39524 SAMTools SNP 2973 2973 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold39524 SAMTools SNP 3975 3975 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold39524 SAMTools SNP 5571 5571 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C69:30 scaffold39524 SAMTools SNP 5577 5577 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C2.6e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C177:49 scaffold39524 SAMTools SNP 5802 5802 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C16%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0036%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold39524 SAMTools SNP 6317 6317 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold39524 SAMTools SNP 6351 6351 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39524 SAMTools SNP 9023 9023 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold39524 SAMTools SNP 10535 10535 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C3%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 10543 10543 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C6%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 10969 10969 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C35%2C24%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 11900 11900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C93%2C17%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.26%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 11909 11909 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C96%2C36%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 12165 12165 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C39%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 12174 12174 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39524 SAMTools SNP 12183 12183 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C45%2C3%2C14%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.055%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold39524 SAMTools SNP 12307 12307 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C13%2C29%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 13024 13024 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C36%2C100%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 13896 13896 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C12%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C3e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 14064 14064 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39524 SAMTools SNP 14074 14074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39524 SAMTools SNP 14089 14089 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C180%2C0%2C102%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C4.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold39524 SAMTools SNP 16134 16134 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39524 SAMTools SNP 17510 17510 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C45%2C0:85 scaffold39524 SAMTools SNP 17719 17719 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold39524 SAMTools SNP 17908 17908 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold39524 SAMTools SNP 19429 19429 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C193%2C0:99 scaffold39524 SAMTools SNP 20264 20264 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold39524 SAMTools SNP 21001 21001 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 21763 21763 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 22158 22158 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C52%2C11%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C2.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 22757 22757 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C29%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 22771 22771 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C4e-11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 24735 24735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C29%2C39%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 25010 25010 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C38%2C59%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 25542 25542 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C86%2C6%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 25554 25554 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C56%2C6%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 25623 25623 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C33%2C13%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.14%2C1%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold39524 SAMTools SNP 26185 26185 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39524 SAMTools SNP 26215 26215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold39524 SAMTools SNP 26509 26509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39524 SAMTools SNP 26530 26530 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C43%2C1%2C15%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold39524 SAMTools SNP 26614 26614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C54%2C66%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 27290 27290 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39524 SAMTools SNP 27291 27291 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39524 SAMTools SNP 31914 31914 69.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold39524 SAMTools SNP 37115 37115 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C1%2C3%3BMQ%3D45%3BFQ%3D13.2%3BPV4%3D0.021%2C1%2C0.031%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold39524 SAMTools SNP 37157 37157 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C27%2C0:51 scaffold39524 SAMTools SNP 37258 37258 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39524 SAMTools SNP 37579 37579 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 37678 37678 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 38009 38009 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C16%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold39524 SAMTools SNP 40326 40326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C7%2C47%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 41988 41988 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C53%2C8%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C5.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 43652 43652 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.27%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39524 SAMTools SNP 46489 46489 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C16%2C27%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0058%2C4.7e-27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold39524 SAMTools SNP 50390 50390 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold39524 SAMTools SNP 53991 53991 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.16%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold39524 SAMTools SNP 54042 54042 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0169%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.36%2C0.38%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold39524 SAMTools SNP 67385 67385 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C15%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C9.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C245:46 scaffold39524 SAMTools SNP 70026 70026 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold39526 SAMTools SNP 8600 8600 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39526 SAMTools SNP 8608 8608 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39526 SAMTools SNP 8647 8647 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39526 SAMTools SNP 10044 10044 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D30%3BFQ%3D-41%3BPV4%3D1%2C1%2C0.092%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C14%2C0:25 scaffold39526 SAMTools SNP 10123 10123 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D42%3BFQ%3D5.47%3BPV4%3D1%2C0.12%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C107:30 scaffold39526 SAMTools SNP 10126 10126 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D32%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C20:23 scaffold39526 SAMTools SNP 10155 10155 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C0%3BMQ%3D42%3BFQ%3D43%3BPV4%3D0.031%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C220:73 scaffold39526 SAMTools SNP 10174 10174 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C14%3BMQ%3D38%3BFQ%3D32%3BPV4%3D0.059%2C1%2C0.064%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C59:62 scaffold39526 SAMTools SNP 12205 12205 68.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D26%3BFQ%3D-28%3BPV4%3D0.18%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C1%2C0:4 scaffold39526 SAMTools SNP 12247 12247 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D24%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold39526 SAMTools SNP 36714 36714 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39526 SAMTools SNP 37075 37075 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39526 SAMTools SNP 37093 37093 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold39526 SAMTools SNP 37257 37257 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold39526 SAMTools SNP 37475 37475 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C0.072%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39526 SAMTools SNP 38096 38096 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39526 SAMTools SNP 40174 40174 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C24%2C0:45 scaffold39526 SAMTools SNP 50484 50484 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold39536 SAMTools SNP 22486 22486 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 22506 22506 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 22599 22599 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 22617 22617 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 22836 22836 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold39536 SAMTools SNP 23327 23327 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 23790 23790 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold39536 SAMTools SNP 43683 43683 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39536 SAMTools SNP 44223 44223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39536 SAMTools SNP 45287 45287 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C24%2C0:45 scaffold39536 SAMTools SNP 45419 45419 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold39536 SAMTools SNP 45434 45434 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold39536 SAMTools SNP 45928 45928 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.31%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39536 SAMTools SNP 47792 47792 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold39536 SAMTools SNP 47807 47807 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.079%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39536 SAMTools SNP 48266 48266 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39536 SAMTools SNP 48476 48476 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.42%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold39536 SAMTools SNP 49477 49477 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold39536 SAMTools SNP 49480 49480 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold39536 SAMTools SNP 49534 49534 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39536 SAMTools SNP 49870 49870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39536 SAMTools SNP 49972 49972 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0003%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold39536 SAMTools SNP 50638 50638 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C3%2C3%3BMQ%3D41%3BFQ%3D21%3BPV4%3D0.32%2C0.45%2C0.18%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold39536 SAMTools SNP 50660 50660 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C8%2C9%3BMQ%3D34%3BFQ%3D78%3BPV4%3D0.011%2C6.1e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold39536 SAMTools SNP 50666 50666 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C1%2C8%3BMQ%3D31%3BFQ%3D29%3BPV4%3D1%2C0.35%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold39536 SAMTools SNP 52246 52246 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39536 SAMTools SNP 52264 52264 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold39536 SAMTools SNP 52300 52300 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C251:99 scaffold39536 SAMTools SNP 52695 52695 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C216:69 scaffold39536 SAMTools SNP 52736 52736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39536 SAMTools SNP 53214 53214 44.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold39536 SAMTools SNP 53295 53295 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39536 SAMTools SNP 53316 53316 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 53349 53349 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.14%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold39536 SAMTools SNP 53767 53767 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold39536 SAMTools SNP 53935 53935 50.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold39536 SAMTools SNP 54136 54136 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 54142 54142 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 55737 55737 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39536 SAMTools SNP 55765 55765 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 55768 55768 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 56132 56132 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39536 SAMTools SNP 56181 56181 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39536 SAMTools SNP 56202 56202 43.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold39536 SAMTools SNP 56283 56283 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 56328 56328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 57049 57049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 57412 57412 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 57471 57471 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 57868 57868 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39536 SAMTools SNP 57970 57970 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold39536 SAMTools SNP 57988 57988 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold39536 SAMTools SNP 58048 58048 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold39536 SAMTools SNP 58057 58057 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39536 SAMTools SNP 58473 58473 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39536 SAMTools SNP 59002 59002 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39536 SAMTools SNP 59008 59008 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39536 SAMTools SNP 59279 59279 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold39536 SAMTools SNP 59527 59527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39536 SAMTools SNP 60026 60026 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C24%2C0:45 scaffold39536 SAMTools SNP 60052 60052 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39536 SAMTools SNP 60875 60875 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39536 SAMTools SNP 61279 61279 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold39536 SAMTools SNP 61318 61318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 61338 61338 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold39536 SAMTools SNP 61402 61402 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold39536 SAMTools SNP 61700 61700 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold39536 SAMTools SNP 61739 61739 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.083%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C117:99 scaffold39536 SAMTools SNP 62318 62318 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39536 SAMTools SNP 62351 62351 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39536 SAMTools SNP 62420 62420 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39536 SAMTools SNP 62920 62920 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold39536 SAMTools SNP 63025 63025 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold39536 SAMTools SNP 63037 63037 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold39536 SAMTools SNP 63043 63043 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold39536 SAMTools SNP 63536 63536 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39536 SAMTools SNP 63563 63563 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44.9%3BPV4%3D1%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C88:75 scaffold39536 SAMTools SNP 63695 63695 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39536 SAMTools SNP 63707 63707 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39536 SAMTools SNP 65296 65296 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold39536 SAMTools SNP 65932 65932 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39536 SAMTools SNP 66249 66249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39536 SAMTools SNP 66270 66270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39536 SAMTools SNP 66339 66339 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold39536 SAMTools SNP 66342 66342 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold39536 SAMTools SNP 66823 66823 67.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C155%2C199%2C0%2C187:33 scaffold39536 SAMTools SNP 67059 67059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39536 SAMTools SNP 68146 68146 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold39536 SAMTools SNP 68185 68185 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39536 SAMTools SNP 69136 69136 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39536 SAMTools SNP 70129 70129 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39570 SAMTools SNP 18544 18544 4.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold39570 SAMTools SNP 18585 18585 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold39570 SAMTools SNP 18714 18714 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39570 SAMTools SNP 18723 18723 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39570 SAMTools SNP 19066 19066 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39570 SAMTools SNP 19101 19101 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39570 SAMTools SNP 58725 58725 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39570 SAMTools SNP 60314 60314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold39570 SAMTools SNP 60347 60347 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39570 SAMTools SNP 60893 60893 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C56:40 scaffold39570 SAMTools SNP 61128 61128 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold39570 SAMTools SNP 61167 61167 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold39570 SAMTools SNP 61176 61176 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39570 SAMTools SNP 61659 61659 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C9:39 scaffold39570 SAMTools SNP 61668 61668 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold39570 SAMTools SNP 61791 61791 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C76:79 scaffold39570 SAMTools SNP 62116 62116 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.45%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C119:99 scaffold39570 SAMTools SNP 62188 62188 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39570 SAMTools SNP 69756 69756 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold39570 SAMTools SNP 70189 70189 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39572 SAMTools SNP 206 206 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 362 362 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 367 367 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 8638 8638 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold39572 SAMTools SNP 12652 12652 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C24%2C0:44 scaffold39572 SAMTools SNP 38481 38481 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold39572 SAMTools SNP 38614 38614 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold39572 SAMTools SNP 38913 38913 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C28%2C26%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C3.5e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold39572 SAMTools SNP 38947 38947 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C21%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C3.6e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C219:61 scaffold39572 SAMTools SNP 39180 39180 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C117:36 scaffold39572 SAMTools SNP 39444 39444 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.055%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C109:99 scaffold39572 SAMTools SNP 39465 39465 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold39572 SAMTools SNP 40216 40216 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39572 SAMTools SNP 40415 40415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 42849 42849 49.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold39572 SAMTools SNP 42869 42869 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold39572 SAMTools SNP 42988 42988 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.044%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold39572 SAMTools SNP 44388 44388 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39572 SAMTools SNP 44444 44444 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39572 SAMTools SNP 44528 44528 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C139:55 scaffold39572 SAMTools SNP 44652 44652 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C69%2C0:99 scaffold39572 SAMTools SNP 45633 45633 7.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold39572 SAMTools SNP 53352 53352 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D29%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C107:51 scaffold39572 SAMTools SNP 53362 53362 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D38%3BFQ%3D-31%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C4%2C0:7 scaffold39572 SAMTools SNP 53631 53631 9.63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D21%3BFQ%3D-28%3BPV4%3D1%2C0.25%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold39572 SAMTools SNP 57857 57857 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C206:63 scaffold39572 SAMTools SNP 59999 59999 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.38%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold39572 SAMTools SNP 60008 60008 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold39572 SAMTools SNP 60243 60243 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 60252 60252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 60402 60402 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold39572 SAMTools SNP 60419 60419 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold39572 SAMTools SNP 60441 60441 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.036%2C0.068%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold39572 SAMTools SNP 60447 60447 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.25%2C0.32%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold39572 SAMTools SNP 60939 60939 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold39572 SAMTools SNP 62552 62552 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 62558 62558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 62612 62612 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 66531 66531 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold39572 SAMTools SNP 66851 66851 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39572 SAMTools SNP 66927 66927 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold39572 SAMTools SNP 67155 67155 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.4e-07%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold39572 SAMTools SNP 67167 67167 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.24%2C0.013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C232:99 scaffold39572 SAMTools SNP 68690 68690 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C244:99 scaffold39572 SAMTools SNP 70923 70923 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C250:66 scaffold39572 SAMTools SNP 71040 71040 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C9%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C1.2e-05%2C0.34%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C57:60 scaffold39572 SAMTools SNP 71082 71082 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold39572 SAMTools SNP 71413 71413 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold39574 SAMTools SNP 13013 13013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39574 SAMTools SNP 13127 13127 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold39574 SAMTools SNP 13158 13158 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C12%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold39574 SAMTools SNP 13343 13343 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold39574 SAMTools SNP 38932 38932 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C27%2C0:46 scaffold39574 SAMTools SNP 39552 39552 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.43%2C2.9e-05%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold39574 SAMTools SNP 39558 39558 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.1%2C0.45%2C1%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C224:56 scaffold39574 SAMTools SNP 40429 40429 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold39574 SAMTools SNP 40431 40431 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold39574 SAMTools SNP 40519 40519 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1.9e-29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold39574 SAMTools SNP 40612 40612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39574 SAMTools SNP 40670 40670 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C54%2C13%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39574 SAMTools SNP 40690 40690 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39574 SAMTools SNP 41222 41222 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C8%2C20%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.6%2C6.5e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold39574 SAMTools SNP 41477 41477 50.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold39574 SAMTools SNP 42296 42296 128 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C48%2C0%2C147%2C22%2C144:93 scaffold39574 SAMTools SNP 42778 42778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold39574 SAMTools SNP 42791 42791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C25%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold39574 SAMTools SNP 44318 44318 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39574 SAMTools SNP 50608 50608 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C2%2C44%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.19%2C1%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39574 SAMTools SNP 55596 55596 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39574 SAMTools SNP 59398 59398 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39574 SAMTools SNP 59404 59404 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold39574 SAMTools SNP 62732 62732 42.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold39574 SAMTools SNP 63756 63756 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39574 SAMTools SNP 67348 67348 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39574 SAMTools SNP 67621 67621 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold39574 SAMTools SNP 67691 67691 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold39574 SAMTools SNP 68072 68072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39574 SAMTools SNP 69377 69377 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C8%3BMQ%3D46%3BFQ%3D35%3BPV4%3D0.16%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C126:65 scaffold39574 SAMTools SNP 71709 71709 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C4%3BMQ%3D43%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold39574 SAMTools SNP 72095 72095 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C3%3BMQ%3D48%3BFQ%3D184%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C211:99 scaffold39574 SAMTools SNP 72128 72128 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C1%3BMQ%3D32%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C110:67 scaffold39574 SAMTools SNP 72381 72381 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D33%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C42%2C0:81 scaffold39580 SAMTools SNP 19501 19501 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.011%2C8.8e-05%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold39580 SAMTools SNP 42542 42542 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold39582 SAMTools SNP 78 78 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold39582 SAMTools SNP 3500 3500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C21%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39582 SAMTools SNP 4865 4865 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C39%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39582 SAMTools SNP 5188 5188 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39582 SAMTools SNP 5776 5776 97.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C15%2C0:27 scaffold39582 SAMTools SNP 5831 5831 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C119:99 scaffold39582 SAMTools SNP 6653 6653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold39582 SAMTools SNP 8340 8340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C20%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold39582 SAMTools SNP 8853 8853 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold39582 SAMTools SNP 12315 12315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39582 SAMTools SNP 12979 12979 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39582 SAMTools SNP 16987 16987 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39582 SAMTools SNP 17872 17872 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D31%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C48%2C0:54 scaffold39582 SAMTools SNP 19908 19908 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold39582 SAMTools SNP 21311 21311 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.53%2C0.44%2C0.032%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39582 SAMTools SNP 27216 27216 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39592 SAMTools SNP 220 220 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D28%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C107:37 scaffold39592 SAMTools SNP 3909 3909 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold39592 SAMTools SNP 4966 4966 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold39592 SAMTools SNP 5614 5614 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39592 SAMTools SNP 8036 8036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.17%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold39592 SAMTools SNP 9968 9968 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold39592 SAMTools SNP 11009 11009 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.18%2C9e-08%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold39592 SAMTools SNP 11020 11020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39592 SAMTools SNP 13000 13000 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold39592 SAMTools SNP 13301 13301 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39592 SAMTools SNP 13670 13670 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.24%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold39592 SAMTools SNP 13700 13700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39592 SAMTools SNP 14105 14105 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold39592 SAMTools SNP 14130 14130 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39592 SAMTools SNP 14326 14326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39592 SAMTools SNP 14379 14379 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.0022%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C220:39 scaffold39592 SAMTools SNP 14845 14845 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold39592 SAMTools SNP 15222 15222 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39592 SAMTools SNP 16632 16632 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D5.9e-05%2C1.2e-08%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39592 SAMTools SNP 17389 17389 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C2%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold39592 SAMTools SNP 18211 18211 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold39592 SAMTools SNP 18355 18355 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39592 SAMTools SNP 18668 18668 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39592 SAMTools SNP 22668 22668 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C199:78 scaffold39592 SAMTools SNP 22927 22927 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.24%2C6.5e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C128:86 scaffold39592 SAMTools SNP 24502 24502 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39592 SAMTools SNP 24920 24920 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.045%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold39592 SAMTools SNP 24941 24941 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold39592 SAMTools SNP 25704 25704 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.65%2C0.35%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold39592 SAMTools SNP 26025 26025 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C20%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C120%2C0:99 scaffold39592 SAMTools SNP 26526 26526 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C45%2C0:87 scaffold39592 SAMTools SNP 26607 26607 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.29%2C7.7e-05%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold39592 SAMTools SNP 26965 26965 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C45%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold39592 SAMTools SNP 27019 27019 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C24%2C0:45 scaffold39592 SAMTools SNP 28302 28302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold39592 SAMTools SNP 29041 29041 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39592 SAMTools SNP 29759 29759 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39592 SAMTools SNP 36170 36170 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold39592 SAMTools SNP 65400 65400 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold39592 SAMTools SNP 65495 65495 31.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold39592 SAMTools SNP 67836 67836 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39592 SAMTools SNP 67882 67882 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39592 SAMTools SNP 67988 67988 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold39592 SAMTools SNP 67992 67992 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.0084%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C107:99 scaffold39592 SAMTools SNP 68990 68990 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold39592 SAMTools SNP 69207 69207 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold39592 SAMTools SNP 70468 70468 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39592 SAMTools SNP 70672 70672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39594 SAMTools SNP 1496 1496 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 1535 1535 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 1578 1578 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 1642 1642 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 6906 6906 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39594 SAMTools SNP 6972 6972 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold39594 SAMTools SNP 7350 7350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 17940 17940 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C4.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold39594 SAMTools SNP 18387 18387 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C221:99 scaffold39594 SAMTools SNP 18762 18762 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C71:70 scaffold39594 SAMTools SNP 18887 18887 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C36%2C0:69 scaffold39594 SAMTools SNP 24853 24853 23.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold39594 SAMTools SNP 25609 25609 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39594 SAMTools SNP 36837 36837 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 39680 39680 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C184:66 scaffold39594 SAMTools SNP 39710 39710 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.098%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C202:99 scaffold39594 SAMTools SNP 39861 39861 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C91:41 scaffold39594 SAMTools SNP 41077 41077 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 62167 62167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39594 SAMTools SNP 72127 72127 31.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold39594 SAMTools SNP 72232 72232 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold39594 SAMTools SNP 72851 72851 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39594 SAMTools SNP 73269 73269 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39598 SAMTools SNP 35377 35377 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39598 SAMTools SNP 35538 35538 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39598 SAMTools SNP 42221 42221 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold396 SAMTools SNP 6977 6977 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 7061 7061 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 7074 7074 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 14663 14663 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 15328 15328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 15361 15361 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold396 SAMTools SNP 16548 16548 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold396 SAMTools SNP 16590 16590 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold396 SAMTools SNP 17212 17212 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C9.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C74:46 scaffold396 SAMTools SNP 17326 17326 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.066%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C245:99 scaffold396 SAMTools SNP 17838 17838 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold396 SAMTools SNP 18280 18280 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold396 SAMTools SNP 22480 22480 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold396 SAMTools SNP 24411 24411 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C81:36 scaffold396 SAMTools SNP 25189 25189 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 47570 47570 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold396 SAMTools SNP 47949 47949 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 48454 48454 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C35%2C8%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.071%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold396 SAMTools SNP 48464 48464 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C40%2C5%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.44%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold396 SAMTools SNP 48734 48734 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C228:99 scaffold396 SAMTools SNP 57469 57469 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold396 SAMTools SNP 57583 57583 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold396 SAMTools SNP 57600 57600 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold396 SAMTools SNP 57629 57629 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold396 SAMTools SNP 59293 59293 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C23%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 59298 59298 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C58%2C32%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 59320 59320 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.015%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 59572 59572 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold396 SAMTools SNP 59581 59581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold396 SAMTools SNP 60845 60845 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold396 SAMTools SNP 61109 61109 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 61792 61792 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 61856 61856 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.25%2C0.16%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold396 SAMTools SNP 61865 61865 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold396 SAMTools SNP 61960 61960 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.28%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold396 SAMTools SNP 62004 62004 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 62064 62064 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C13%2C0%2C20%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1.2e-10%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold396 SAMTools SNP 62355 62355 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C58%2C10%3BMQ%3D50%3BFQ%3D-202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold396 SAMTools SNP 62576 62576 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold396 SAMTools SNP 62581 62581 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold396 SAMTools SNP 64532 64532 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold396 SAMTools SNP 68697 68697 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold396 SAMTools SNP 68869 68869 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.56%2C8.3e-19%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C254:46 scaffold396 SAMTools SNP 79023 79023 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C41:44 scaffold396 SAMTools SNP 101416 101416 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C63%2C0:99 scaffold396 SAMTools SNP 112388 112388 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold396 SAMTools SNP 112410 112410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C1%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 113532 113532 157 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C52%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C234%2C65%2C185%2C0%2C163:99 scaffold396 SAMTools SNP 113564 113564 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C65%2C4%2C6%3BMQ%3D49%3BFQ%3D43%3BPV4%3D0.24%2C0.056%2C9.8e-06%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold396 SAMTools SNP 113604 113604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C19%2C6%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 113891 113891 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C71%2C6%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 114214 114214 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C63%2C17%2C15%3BMQ%3D46%3BFQ%3D214%3BPV4%3D3.6e-05%2C1%2C3e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold396 SAMTools SNP 114548 114548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold396 SAMTools SNP 116253 116253 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 116272 116272 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold396 SAMTools SNP 117502 117502 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold396 SAMTools SNP 118700 118700 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold396 SAMTools SNP 119177 119177 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold396 SAMTools SNP 119280 119280 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold396 SAMTools SNP 120416 120416 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.027%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold396 SAMTools SNP 121117 121117 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C182:74 scaffold396 SAMTools SNP 121849 121849 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C180:31 scaffold396 SAMTools SNP 121866 121866 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold396 SAMTools SNP 122432 122432 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C112:99 scaffold396 SAMTools SNP 122458 122458 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C87:90 scaffold396 SAMTools SNP 122988 122988 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold396 SAMTools SNP 122998 122998 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold396 SAMTools SNP 123523 123523 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.13%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold396 SAMTools SNP 123526 123526 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.29%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold396 SAMTools SNP 123875 123875 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold396 SAMTools SNP 124411 124411 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold396 SAMTools SNP 137535 137535 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 138069 138069 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 138107 138107 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 138563 138563 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 138582 138582 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold396 SAMTools SNP 172039 172039 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.78%3BPV4%3D1%2C0.001%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C57:34 scaffold396 SAMTools SNP 172654 172654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C32%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold396 SAMTools SNP 172691 172691 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold396 SAMTools SNP 172999 172999 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 173029 173029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C55%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold396 SAMTools SNP 173439 173439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold396 SAMTools SNP 174121 174121 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold396 SAMTools SNP 174266 174266 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 185154 185154 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold396 SAMTools SNP 198212 198212 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold396 SAMTools SNP 227330 227330 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold396 SAMTools SNP 237774 237774 17.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold396 SAMTools SNP 241543 241543 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold396 SAMTools SNP 241738 241738 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C116:57 scaffold396 SAMTools SNP 243875 243875 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.42%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold396 SAMTools SNP 244380 244380 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold396 SAMTools SNP 245680 245680 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C24:27 scaffold396 SAMTools SNP 245767 245767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 245803 245803 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold396 SAMTools SNP 246009 246009 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D0.13%2C0.03%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C124:99 scaffold396 SAMTools SNP 246098 246098 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold396 SAMTools SNP 246240 246240 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C189:36 scaffold396 SAMTools SNP 246282 246282 15.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold396 SAMTools SNP 250243 250243 43.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold396 SAMTools SNP 250342 250342 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold396 SAMTools SNP 251910 251910 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.42%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold396 SAMTools SNP 251978 251978 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C9%2C24%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.7%2C3.2e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C251:99 scaffold396 SAMTools SNP 252562 252562 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold396 SAMTools SNP 252625 252625 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold396 SAMTools SNP 252673 252673 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.037%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold396 SAMTools SNP 253770 253770 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.34%2C0.037%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold396 SAMTools SNP 257859 257859 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 257912 257912 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C130:42 scaffold396 SAMTools SNP 257915 257915 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.061%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C154:62 scaffold396 SAMTools SNP 261734 261734 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.059%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold396 SAMTools SNP 262915 262915 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold396 SAMTools SNP 263182 263182 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C46%2C79%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1.7e-06%2C1.4e-227%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold396 SAMTools SNP 263233 263233 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C79%2C11%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 263275 263275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C88%2C20%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 263610 263610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 263618 263618 57.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold396 SAMTools SNP 266228 266228 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 266267 266267 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 266498 266498 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold396 SAMTools SNP 266576 266576 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold396 SAMTools SNP 266585 266585 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold396 SAMTools SNP 267954 267954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold396 SAMTools SNP 268002 268002 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C4.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 268252 268252 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 268294 268294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C46%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold396 SAMTools SNP 268303 268303 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold396 SAMTools SNP 268309 268309 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold396 SAMTools SNP 268330 268330 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 268561 268561 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C155:99 scaffold396 SAMTools SNP 268563 268563 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C18%2C0:33 scaffold396 SAMTools SNP 268581 268581 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold396 SAMTools SNP 271348 271348 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C19%3BMQ%3D48%3BFQ%3D140%3BPV4%3D0.37%2C5.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C167:99 scaffold396 SAMTools SNP 271399 271399 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D41%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold396 SAMTools SNP 271417 271417 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C7%2C0%3BMQ%3D44%3BFQ%3D87%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold396 SAMTools SNP 274588 274588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C7%3BMQ%3D46%3BFQ%3D112%3BPV4%3D0.14%2C0.28%2C0.5%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold396 SAMTools SNP 274606 274606 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold396 SAMTools SNP 275017 275017 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C7%3BMQ%3D49%3BFQ%3D125%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold396 SAMTools SNP 275892 275892 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C9%3BMQ%3D43%3BFQ%3D126%3BPV4%3D0.075%2C0.047%2C0.004%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C231:99 scaffold396 SAMTools SNP 278676 278676 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.8e-36%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C241:54 scaffold396 SAMTools SNP 278789 278789 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C5%2C40%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.73%2C2.7e-49%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold396 SAMTools SNP 284124 284124 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold396 SAMTools SNP 285186 285186 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C100:78 scaffold396 SAMTools SNP 296531 296531 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 296877 296877 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold396 SAMTools SNP 318312 318312 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C29:32 scaffold396 SAMTools SNP 318980 318980 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold396 SAMTools SNP 320281 320281 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold396 SAMTools SNP 322075 322075 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 322096 322096 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold396 SAMTools SNP 325173 325173 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold396 SAMTools SNP 325221 325221 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold396 SAMTools SNP 327801 327801 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.015%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold396 SAMTools SNP 327843 327843 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.0081%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold396 SAMTools SNP 328197 328197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold396 SAMTools SNP 328251 328251 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.089%2C0.15%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C208:99 scaffold396 SAMTools SNP 329242 329242 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold396 SAMTools SNP 329256 329256 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold396 SAMTools SNP 330235 330235 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold396 SAMTools SNP 330866 330866 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold396 SAMTools SNP 331177 331177 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 331231 331231 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold396 SAMTools SNP 332767 332767 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 335515 335515 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold396 SAMTools SNP 337302 337302 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold396 SAMTools SNP 349017 349017 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold396 SAMTools SNP 349123 349123 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold396 SAMTools SNP 349897 349897 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 364479 364479 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold396 SAMTools SNP 370923 370923 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold396 SAMTools SNP 370951 370951 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 370967 370967 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 376701 376701 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 384759 384759 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 386810 386810 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold396 SAMTools SNP 386855 386855 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold396 SAMTools SNP 386897 386897 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold396 SAMTools SNP 386912 386912 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold396 SAMTools SNP 387895 387895 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold396 SAMTools SNP 387928 387928 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold396 SAMTools SNP 388609 388609 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 388671 388671 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C87:42 scaffold396 SAMTools SNP 388855 388855 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold396 SAMTools SNP 392233 392233 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 392284 392284 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold396 SAMTools SNP 392290 392290 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold396 SAMTools SNP 392991 392991 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.22%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C71:74 scaffold396 SAMTools SNP 394559 394559 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.32%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold396 SAMTools SNP 401990 401990 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C63%2C0:99 scaffold396 SAMTools SNP 403766 403766 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.61%2C1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold396 SAMTools SNP 403856 403856 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.6e-13%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C179:99 scaffold396 SAMTools SNP 404221 404221 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold396 SAMTools SNP 404820 404820 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold396 SAMTools SNP 406044 406044 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold396 SAMTools SNP 416936 416936 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold396 SAMTools SNP 416958 416958 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 416969 416969 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 417017 417017 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold396 SAMTools SNP 417993 417993 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 418020 418020 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C24%2C0:45 scaffold396 SAMTools SNP 418257 418257 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 418435 418435 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 430534 430534 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 430903 430903 18 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold396 SAMTools SNP 432115 432115 43.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold396 SAMTools SNP 435582 435582 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold396 SAMTools SNP 435672 435672 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold396 SAMTools SNP 438574 438574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold396 SAMTools SNP 438589 438589 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold396 SAMTools SNP 438609 438609 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold396 SAMTools SNP 438796 438796 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C154:99 scaffold396 SAMTools SNP 440643 440643 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C47%2C15%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 441194 441194 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 441233 441233 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold396 SAMTools SNP 441807 441807 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.035%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C182:42 scaffold396 SAMTools SNP 443352 443352 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold396 SAMTools SNP 444392 444392 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold396 SAMTools SNP 444493 444493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold396 SAMTools SNP 444912 444912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold396 SAMTools SNP 445340 445340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C232:99 scaffold396 SAMTools SNP 445866 445866 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C17%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C172%2C0:99 scaffold396 SAMTools SNP 446452 446452 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold396 SAMTools SNP 447303 447303 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold396 SAMTools SNP 447686 447686 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.29%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold396 SAMTools SNP 449288 449288 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold396 SAMTools SNP 453322 453322 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C18%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.65%2C7.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold396 SAMTools SNP 456738 456738 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold396 SAMTools SNP 456744 456744 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold396 SAMTools SNP 456987 456987 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold396 SAMTools SNP 457017 457017 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold396 SAMTools SNP 457428 457428 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold396 SAMTools SNP 459253 459253 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.49%2C3.8e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C96:76 scaffold396 SAMTools SNP 460476 460476 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C181:99 scaffold396 SAMTools SNP 461749 461749 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C15%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold396 SAMTools SNP 462483 462483 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42.9%3BPV4%3D1%2C0.00021%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C88:73 scaffold396 SAMTools SNP 464865 464865 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold396 SAMTools SNP 465548 465548 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold396 SAMTools SNP 465649 465649 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.15%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 466275 466275 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C42%2C0:81 scaffold396 SAMTools SNP 480837 480837 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold396 SAMTools SNP 481108 481108 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C30%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold396 SAMTools SNP 481462 481462 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C46%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold396 SAMTools SNP 485356 485356 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.53%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold396 SAMTools SNP 485391 485391 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold396 SAMTools SNP 485811 485811 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold396 SAMTools SNP 487610 487610 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.33%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold396 SAMTools SNP 487625 487625 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.25%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C131:99 scaffold396 SAMTools SNP 488772 488772 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 489151 489151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C15%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold396 SAMTools SNP 489166 489166 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C22%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.79%2C7.6e-24%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold396 SAMTools SNP 489385 489385 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C154%2C74%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C4.9e-153%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 489436 489436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C162%2C8%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 490343 490343 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold396 SAMTools SNP 510747 510747 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold396 SAMTools SNP 511566 511566 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold396 SAMTools SNP 512059 512059 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold396 SAMTools SNP 512261 512261 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold396 SAMTools SNP 512264 512264 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold396 SAMTools SNP 512297 512297 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold396 SAMTools SNP 512312 512312 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold396 SAMTools SNP 514575 514575 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C32:35 scaffold396 SAMTools SNP 514620 514620 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C169:99 scaffold396 SAMTools SNP 514861 514861 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold396 SAMTools SNP 515154 515154 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold396 SAMTools SNP 515178 515178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold396 SAMTools SNP 518605 518605 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C42%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D6.6e-12%2C1.7e-32%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold396 SAMTools SNP 519271 519271 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C22%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 519291 519291 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C23%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold396 SAMTools SNP 519673 519673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C44%2C111%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 520266 520266 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C74%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 520811 520811 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C38%2C35%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 520820 520820 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C39%2C55%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.1e-08%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 521152 521152 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C151%2C6%2C66%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1.5e-05%2C0.38%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold396 SAMTools SNP 521240 521240 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C58%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 521859 521859 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C6%2C89%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.21%2C4.4e-100%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold396 SAMTools SNP 522219 522219 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C98%2C22%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 522279 522279 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C30%2C23%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 523090 523090 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D974%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D326%2C14%2C627%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C3.4e-47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 523145 523145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D973%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C76%2C676%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 524930 524930 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold396 SAMTools SNP 525020 525020 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.48%2C8e-20%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold396 SAMTools SNP 526995 526995 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C210:54 scaffold396 SAMTools SNP 528081 528081 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold396 SAMTools SNP 528090 528090 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C33%2C0:63 scaffold396 SAMTools SNP 528589 528589 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold396 SAMTools SNP 528593 528593 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold396 SAMTools SNP 528602 528602 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D20%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.29%2C0.29%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold396 SAMTools SNP 528896 528896 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold396 SAMTools SNP 528950 528950 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold396 SAMTools SNP 529416 529416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C10%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold396 SAMTools SNP 529641 529641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold396 SAMTools SNP 529647 529647 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.26%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold396 SAMTools SNP 529983 529983 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold396 SAMTools SNP 529995 529995 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C15%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.03%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold396 SAMTools SNP 530022 530022 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.15%2C0.037%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold396 SAMTools SNP 530370 530370 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.15%2C4.4e-05%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold396 SAMTools SNP 530392 530392 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold396 SAMTools SNP 530414 530414 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C17%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.59%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold396 SAMTools SNP 530547 530547 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C2%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.56%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold396 SAMTools SNP 531136 531136 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold396 SAMTools SNP 531157 531157 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39600 SAMTools SNP 14987 14987 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39600 SAMTools SNP 15690 15690 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39600 SAMTools SNP 15739 15739 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39600 SAMTools SNP 15896 15896 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39600 SAMTools SNP 15899 15899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39600 SAMTools SNP 16898 16898 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39600 SAMTools SNP 17278 17278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39600 SAMTools SNP 18614 18614 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C17%2C49%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.00029%2C5.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold39600 SAMTools SNP 19491 19491 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39600 SAMTools SNP 21534 21534 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39600 SAMTools SNP 25710 25710 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold39600 SAMTools SNP 26243 26243 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold39600 SAMTools SNP 32576 32576 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39600 SAMTools SNP 68167 68167 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold39620 SAMTools SNP 9854 9854 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 9969 9969 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 9970 9970 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 36060 36060 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39620 SAMTools SNP 36692 36692 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39620 SAMTools SNP 36765 36765 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold39620 SAMTools SNP 45732 45732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 45851 45851 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 47967 47967 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39620 SAMTools SNP 47988 47988 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39620 SAMTools SNP 48025 48025 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 49331 49331 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold39620 SAMTools SNP 49344 49344 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39620 SAMTools SNP 49926 49926 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold39620 SAMTools SNP 49948 49948 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39620 SAMTools SNP 49953 49953 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39620 SAMTools SNP 50897 50897 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39620 SAMTools SNP 71508 71508 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C51%2C0:99 scaffold39634 SAMTools SNP 1344 1344 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 1405 1405 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 1409 1409 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 3912 3912 39.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold39634 SAMTools SNP 4153 4153 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39634 SAMTools SNP 7369 7369 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 15790 15790 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39634 SAMTools SNP 16092 16092 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C7.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold39634 SAMTools SNP 16381 16381 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.049%2C0.31%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold39634 SAMTools SNP 16816 16816 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.004%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C236:99 scaffold39634 SAMTools SNP 17140 17140 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39634 SAMTools SNP 17753 17753 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C17%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C162:99 scaffold39634 SAMTools SNP 17804 17804 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold39634 SAMTools SNP 17955 17955 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold39634 SAMTools SNP 17970 17970 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39634 SAMTools SNP 18505 18505 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold39634 SAMTools SNP 18772 18772 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39634 SAMTools SNP 19186 19186 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C241:99 scaffold39634 SAMTools SNP 19207 19207 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39634 SAMTools SNP 19698 19698 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C24%2C0:45 scaffold39634 SAMTools SNP 19719 19719 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold39634 SAMTools SNP 19734 19734 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.0098%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C218:99 scaffold39634 SAMTools SNP 20505 20505 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold39634 SAMTools SNP 21033 21033 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39634 SAMTools SNP 21391 21391 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39634 SAMTools SNP 22223 22223 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.76%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C30:33 scaffold39634 SAMTools SNP 22225 22225 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold39634 SAMTools SNP 22241 22241 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39634 SAMTools SNP 22445 22445 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.4%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C118:99 scaffold39634 SAMTools SNP 22447 22447 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C0.078%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold39634 SAMTools SNP 22456 22456 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold39634 SAMTools SNP 22578 22578 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39634 SAMTools SNP 22608 22608 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold39634 SAMTools SNP 23098 23098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39634 SAMTools SNP 24485 24485 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39634 SAMTools SNP 24609 24609 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold39634 SAMTools SNP 25108 25108 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39634 SAMTools SNP 26374 26374 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39634 SAMTools SNP 26404 26404 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold39634 SAMTools SNP 26458 26458 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39634 SAMTools SNP 27937 27937 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39634 SAMTools SNP 27955 27955 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold39634 SAMTools SNP 28723 28723 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold39634 SAMTools SNP 29021 29021 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.47%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold39634 SAMTools SNP 29317 29317 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold39634 SAMTools SNP 30097 30097 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.028%2C6.7e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C191:34 scaffold39634 SAMTools SNP 31214 31214 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C224:72 scaffold39634 SAMTools SNP 39317 39317 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39634 SAMTools SNP 39916 39916 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39634 SAMTools SNP 39949 39949 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C34%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39634 SAMTools SNP 39965 39965 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C26%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39634 SAMTools SNP 40221 40221 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold39634 SAMTools SNP 40240 40240 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C0%2C10%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0013%2C2.4e-07%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold39634 SAMTools SNP 40592 40592 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold39634 SAMTools SNP 40803 40803 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold39634 SAMTools SNP 41250 41250 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C7%3BMQ%3D35%3BFQ%3D138%3BPV4%3D0.46%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C170:99 scaffold39634 SAMTools SNP 42022 42022 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C9%3BMQ%3D24%3BFQ%3D6.2%3BPV4%3D0.11%2C1%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C67:31 scaffold39634 SAMTools SNP 42064 42064 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C2%3BMQ%3D39%3BFQ%3D76%3BPV4%3D1%2C0.5%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C195:99 scaffold39634 SAMTools SNP 42814 42814 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C10%2C1%3BMQ%3D49%3BFQ%3D181%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold39634 SAMTools SNP 44260 44260 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C22%2C13%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.3e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39634 SAMTools SNP 49057 49057 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 50159 50159 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.6%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold39634 SAMTools SNP 50195 50195 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 51265 51265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39634 SAMTools SNP 51354 51354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C38%2C30%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39634 SAMTools SNP 67792 67792 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 67829 67829 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39634 SAMTools SNP 69515 69515 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39640 SAMTools SNP 48319 48319 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C15%2C0:27 scaffold39640 SAMTools SNP 48640 48640 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold39640 SAMTools SNP 48659 48659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39640 SAMTools SNP 49003 49003 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold39642 SAMTools SNP 12299 12299 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39642 SAMTools SNP 17779 17779 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39652 SAMTools SNP 106 106 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39652 SAMTools SNP 107 107 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39652 SAMTools SNP 195 195 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39652 SAMTools SNP 41619 41619 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D3%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C75%2C0:57 scaffold39688 SAMTools SNP 275 275 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold39688 SAMTools SNP 389 389 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold39688 SAMTools SNP 3369 3369 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D65.2%3BPV4%3D1%2C0.018%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C93:95 scaffold39688 SAMTools SNP 8407 8407 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold39688 SAMTools SNP 9581 9581 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39688 SAMTools SNP 9641 9641 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39688 SAMTools SNP 10062 10062 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39688 SAMTools SNP 11068 11068 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39688 SAMTools SNP 11679 11679 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39688 SAMTools SNP 16860 16860 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39688 SAMTools SNP 17763 17763 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold39688 SAMTools SNP 18923 18923 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold39688 SAMTools SNP 18953 18953 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C41:44 scaffold39688 SAMTools SNP 31725 31725 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C45%2C0:87 scaffold39688 SAMTools SNP 31799 31799 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.6e-07%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C136:31 scaffold39688 SAMTools SNP 36620 36620 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold39688 SAMTools SNP 52376 52376 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold39688 SAMTools SNP 53420 53420 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39688 SAMTools SNP 53447 53447 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C18:21 scaffold39688 SAMTools SNP 53536 53536 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold39688 SAMTools SNP 54044 54044 137 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C36%2C6%2C159%2C0%2C153:57 scaffold39688 SAMTools SNP 54113 54113 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C42%2C0:81 scaffold39688 SAMTools SNP 54449 54449 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C73%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C247%2C0:99 scaffold39688 SAMTools SNP 54596 54596 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C7.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C71:55 scaffold39688 SAMTools SNP 54626 54626 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.8e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C32:35 scaffold39688 SAMTools SNP 54781 54781 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.24%2C2.2e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C221:37 scaffold39688 SAMTools SNP 55168 55168 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C39%2C0:70 scaffold39688 SAMTools SNP 57122 57122 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold39688 SAMTools SNP 59959 59959 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold39688 SAMTools SNP 59971 59971 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold39688 SAMTools SNP 60178 60178 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold39688 SAMTools SNP 60991 60991 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39688 SAMTools SNP 61080 61080 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold39688 SAMTools SNP 62416 62416 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold39688 SAMTools SNP 62444 62444 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39688 SAMTools SNP 63695 63695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39688 SAMTools SNP 63710 63710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39688 SAMTools SNP 63773 63773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39688 SAMTools SNP 66537 66537 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39688 SAMTools SNP 68713 68713 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39694 SAMTools SNP 2438 2438 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39694 SAMTools SNP 8427 8427 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold39694 SAMTools SNP 11381 11381 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39694 SAMTools SNP 12728 12728 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold39694 SAMTools SNP 12779 12779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold39694 SAMTools SNP 12815 12815 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D11%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C69%2C0:68 scaffold39694 SAMTools SNP 13133 13133 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D13%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C90%2C0:99 scaffold39694 SAMTools SNP 13181 13181 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C11%3BMQ%3D35%3BFQ%3D4.77%3BPV4%3D0.26%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C30:33 scaffold39694 SAMTools SNP 13971 13971 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C10%3BMQ%3D43%3BFQ%3D130%3BPV4%3D1%2C0.097%2C0.18%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold39694 SAMTools SNP 15427 15427 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.14%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C129:99 scaffold39694 SAMTools SNP 15445 15445 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D47%3BFQ%3D75%3BPV4%3D1%2C0.085%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C156:99 scaffold39694 SAMTools SNP 15454 15454 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39694 SAMTools SNP 17700 17700 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39694 SAMTools SNP 17736 17736 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39694 SAMTools SNP 34597 34597 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold39694 SAMTools SNP 34735 34735 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D47%3BFQ%3D81%3BPV4%3D1%2C1%2C0.18%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C134:99 scaffold39694 SAMTools SNP 35102 35102 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39694 SAMTools SNP 35156 35156 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39694 SAMTools SNP 36696 36696 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39694 SAMTools SNP 36699 36699 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold39694 SAMTools SNP 37794 37794 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39694 SAMTools SNP 37795 37795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39694 SAMTools SNP 38060 38060 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39694 SAMTools SNP 38221 38221 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold39694 SAMTools SNP 40769 40769 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold39694 SAMTools SNP 76064 76064 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C65%2C74%2C52%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.39%2C1.7e-226%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold39696 SAMTools SNP 18379 18379 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39696 SAMTools SNP 18520 18520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39696 SAMTools SNP 50381 50381 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold39696 SAMTools SNP 65762 65762 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold39696 SAMTools SNP 74647 74647 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold397 SAMTools SNP 29431 29431 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold397 SAMTools SNP 29613 29613 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold397 SAMTools SNP 29615 29615 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold397 SAMTools SNP 51104 51104 13.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D15%3BFQ%3D-39%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold397 SAMTools SNP 51219 51219 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold397 SAMTools SNP 55092 55092 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold397 SAMTools SNP 55150 55150 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.0063%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C220:39 scaffold397 SAMTools SNP 56856 56856 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold397 SAMTools SNP 56948 56948 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39712 SAMTools SNP 216 216 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39712 SAMTools SNP 2638 2638 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39712 SAMTools SNP 2673 2673 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39712 SAMTools SNP 2803 2803 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold39712 SAMTools SNP 2811 2811 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold39712 SAMTools SNP 3365 3365 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.46%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold39712 SAMTools SNP 30110 30110 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39712 SAMTools SNP 30381 30381 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39712 SAMTools SNP 30749 30749 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold39712 SAMTools SNP 30770 30770 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39712 SAMTools SNP 30802 30802 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.009%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39712 SAMTools SNP 30887 30887 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.025%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold39712 SAMTools SNP 31291 31291 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold39712 SAMTools SNP 31319 31319 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold39712 SAMTools SNP 31355 31355 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C239:99 scaffold39712 SAMTools SNP 31817 31817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold39712 SAMTools SNP 32475 32475 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C185:99 scaffold39712 SAMTools SNP 35230 35230 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39712 SAMTools SNP 35921 35921 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39712 SAMTools SNP 36159 36159 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold39712 SAMTools SNP 36168 36168 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39712 SAMTools SNP 36201 36201 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C21%2C0:39 scaffold39712 SAMTools SNP 36222 36222 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39712 SAMTools SNP 36936 36936 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C48%2C0:93 scaffold39712 SAMTools SNP 36978 36978 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C36%2C0:69 scaffold39712 SAMTools SNP 37417 37417 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39712 SAMTools SNP 37453 37453 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39712 SAMTools SNP 37481 37481 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39712 SAMTools SNP 38247 38247 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39712 SAMTools SNP 40818 40818 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39712 SAMTools SNP 41160 41160 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39712 SAMTools SNP 41660 41660 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold39712 SAMTools SNP 41705 41705 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold39712 SAMTools SNP 41801 41801 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39712 SAMTools SNP 41835 41835 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.085%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold39712 SAMTools SNP 44838 44838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold39716 SAMTools SNP 12339 12339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.15%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold39716 SAMTools SNP 12974 12974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold39716 SAMTools SNP 12995 12995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold39716 SAMTools SNP 13623 13623 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold39716 SAMTools SNP 13638 13638 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39716 SAMTools SNP 15401 15401 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold39716 SAMTools SNP 15467 15467 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.27%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold39716 SAMTools SNP 18234 18234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold39716 SAMTools SNP 18819 18819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39716 SAMTools SNP 19949 19949 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C32:35 scaffold39716 SAMTools SNP 30756 30756 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39716 SAMTools SNP 30821 30821 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold39716 SAMTools SNP 31469 31469 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39716 SAMTools SNP 33562 33562 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39716 SAMTools SNP 33573 33573 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.5%2C0.12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C177:62 scaffold39716 SAMTools SNP 41561 41561 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold39716 SAMTools SNP 42043 42043 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold39716 SAMTools SNP 42076 42076 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C149:99 scaffold39716 SAMTools SNP 49281 49281 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39716 SAMTools SNP 49299 49299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39716 SAMTools SNP 49386 49386 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39716 SAMTools SNP 49392 49392 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold39716 SAMTools SNP 49886 49886 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39716 SAMTools SNP 50226 50226 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39716 SAMTools SNP 50312 50312 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39716 SAMTools SNP 50850 50850 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39716 SAMTools SNP 50871 50871 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39716 SAMTools SNP 54809 54809 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold39716 SAMTools SNP 54878 54878 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold39716 SAMTools SNP 55956 55956 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold39716 SAMTools SNP 55980 55980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39716 SAMTools SNP 56001 56001 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.52%2C0.34%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold39716 SAMTools SNP 56630 56630 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.45%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold39716 SAMTools SNP 57170 57170 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C35%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.049%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold39716 SAMTools SNP 57687 57687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39716 SAMTools SNP 57711 57711 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39716 SAMTools SNP 58050 58050 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.067%2C0.00026%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold39716 SAMTools SNP 58057 58057 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39716 SAMTools SNP 58257 58257 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.091%2C0.46%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold39716 SAMTools SNP 59334 59334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C35%3BMQ%3D48%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold39716 SAMTools SNP 59427 59427 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C29%2C3%2C0%3BMQ%3D45%3BFQ%3D6.2%3BPV4%3D0.00073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold39716 SAMTools SNP 59758 59758 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D45%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold39716 SAMTools SNP 59998 59998 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39716 SAMTools SNP 60091 60091 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold39716 SAMTools SNP 60800 60800 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39716 SAMTools SNP 61370 61370 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39716 SAMTools SNP 62169 62169 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C36%2C0:69 scaffold39716 SAMTools SNP 62193 62193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39716 SAMTools SNP 62497 62497 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D4.9e-05%2C0.0024%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C234:85 scaffold39716 SAMTools SNP 63407 63407 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.052%2C0.011%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold39716 SAMTools SNP 63413 63413 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.051%2C8.8e-05%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold39716 SAMTools SNP 63443 63443 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold39716 SAMTools SNP 65018 65018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39716 SAMTools SNP 65026 65026 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.087%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold39716 SAMTools SNP 68277 68277 59.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold39716 SAMTools SNP 69851 69851 18.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold39716 SAMTools SNP 71013 71013 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39716 SAMTools SNP 71058 71058 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold39716 SAMTools SNP 71601 71601 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39716 SAMTools SNP 71670 71670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold39716 SAMTools SNP 71867 71867 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0059%2C0.23%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold39716 SAMTools SNP 71879 71879 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39716 SAMTools SNP 71987 71987 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39716 SAMTools SNP 71992 71992 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39716 SAMTools SNP 72362 72362 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold39720 SAMTools SNP 2917 2917 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39720 SAMTools SNP 3021 3021 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39720 SAMTools SNP 7336 7336 31.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold39720 SAMTools SNP 8581 8581 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold39720 SAMTools SNP 8742 8742 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold39720 SAMTools SNP 10295 10295 45.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold39720 SAMTools SNP 21137 21137 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39720 SAMTools SNP 22465 22465 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold39720 SAMTools SNP 24754 24754 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold39720 SAMTools SNP 24796 24796 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold39720 SAMTools SNP 24797 24797 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39720 SAMTools SNP 29757 29757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39720 SAMTools SNP 30848 30848 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.3%2C0.34%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold39720 SAMTools SNP 31678 31678 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C13%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold39720 SAMTools SNP 32359 32359 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C21%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold39720 SAMTools SNP 33689 33689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold39720 SAMTools SNP 33934 33934 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold39720 SAMTools SNP 34155 34155 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.4e-07%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39720 SAMTools SNP 36652 36652 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C232:99 scaffold39720 SAMTools SNP 37525 37525 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C33%2C94%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39720 SAMTools SNP 39290 39290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C176%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39720 SAMTools SNP 39629 39629 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.077%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold39720 SAMTools SNP 39898 39898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold39720 SAMTools SNP 39901 39901 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.22%2C0.47%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold39720 SAMTools SNP 39919 39919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold39720 SAMTools SNP 40278 40278 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C5%2C45%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39720 SAMTools SNP 40314 40314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.025%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39720 SAMTools SNP 40323 40323 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C8%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold39720 SAMTools SNP 40677 40677 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold39720 SAMTools SNP 40698 40698 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold39720 SAMTools SNP 40740 40740 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold39720 SAMTools SNP 41048 41048 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C49:52 scaffold39720 SAMTools SNP 41894 41894 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39720 SAMTools SNP 43218 43218 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39720 SAMTools SNP 47359 47359 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C2%2C21%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold39720 SAMTools SNP 47386 47386 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C0%2C10%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold39720 SAMTools SNP 56072 56072 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold39720 SAMTools SNP 56082 56082 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold39720 SAMTools SNP 57179 57179 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.42%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold39720 SAMTools SNP 57193 57193 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C33%2C0:63 scaffold39720 SAMTools SNP 57701 57701 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39720 SAMTools SNP 57719 57719 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39720 SAMTools SNP 58317 58317 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39724 SAMTools SNP 14022 14022 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39724 SAMTools SNP 26914 26914 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39724 SAMTools SNP 27026 27026 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39724 SAMTools SNP 30140 30140 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39724 SAMTools SNP 30259 30259 10.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold39724 SAMTools SNP 37826 37826 92.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold39724 SAMTools SNP 38327 38327 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold39724 SAMTools SNP 38343 38343 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39724 SAMTools SNP 38832 38832 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold39724 SAMTools SNP 38865 38865 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.019%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold39724 SAMTools SNP 38871 38871 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold39724 SAMTools SNP 38909 38909 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C0.21%2C0.14%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold39724 SAMTools SNP 38970 38970 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.21%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold39724 SAMTools SNP 39451 39451 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C107:99 scaffold39724 SAMTools SNP 39893 39893 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39724 SAMTools SNP 63353 63353 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39724 SAMTools SNP 63354 63354 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39724 SAMTools SNP 63367 63367 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39724 SAMTools SNP 64261 64261 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39724 SAMTools SNP 64356 64356 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39724 SAMTools SNP 64364 64364 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold39724 SAMTools SNP 64836 64836 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold39724 SAMTools SNP 65129 65129 92.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold39724 SAMTools SNP 65434 65434 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold39724 SAMTools SNP 68996 68996 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39724 SAMTools SNP 72026 72026 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D42%3BFQ%3D27%3BPV4%3D0.029%2C0.017%2C0.41%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C109:57 scaffold39724 SAMTools SNP 72044 72044 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D43%3BFQ%3D45%3BPV4%3D0.2%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C162:75 scaffold39730 SAMTools SNP 55 55 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39730 SAMTools SNP 5116 5116 25.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold39730 SAMTools SNP 5119 5119 3.41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39730 SAMTools SNP 5367 5367 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C20%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D3.2e-05%2C5.2e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C180:99 scaffold39730 SAMTools SNP 5768 5768 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold39730 SAMTools SNP 9702 9702 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39730 SAMTools SNP 9717 9717 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold39730 SAMTools SNP 9905 9905 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold39730 SAMTools SNP 9941 9941 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39730 SAMTools SNP 10775 10775 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C21%2C0:39 scaffold39730 SAMTools SNP 11771 11771 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold39730 SAMTools SNP 11961 11961 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C160:53 scaffold39730 SAMTools SNP 11984 11984 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold39730 SAMTools SNP 13108 13108 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39730 SAMTools SNP 13144 13144 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 15084 15084 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 15096 15096 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 17926 17926 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39730 SAMTools SNP 19187 19187 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39730 SAMTools SNP 19214 19214 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.071%2C0.078%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C235:99 scaffold39730 SAMTools SNP 20655 20655 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C239:99 scaffold39730 SAMTools SNP 21019 21019 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39730 SAMTools SNP 21684 21684 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C5e-14%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold39730 SAMTools SNP 21843 21843 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C63%2C0:99 scaffold39730 SAMTools SNP 22194 22194 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold39730 SAMTools SNP 22968 22968 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold39730 SAMTools SNP 24156 24156 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold39730 SAMTools SNP 24260 24260 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39730 SAMTools SNP 25219 25219 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39730 SAMTools SNP 25935 25935 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0163%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C182:30 scaffold39730 SAMTools SNP 26025 26025 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C0.45%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C233:99 scaffold39730 SAMTools SNP 28208 28208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39730 SAMTools SNP 28657 28657 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39730 SAMTools SNP 28678 28678 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39730 SAMTools SNP 29151 29151 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39730 SAMTools SNP 30169 30169 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.026%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold39730 SAMTools SNP 32772 32772 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold39730 SAMTools SNP 38096 38096 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39730 SAMTools SNP 38167 38167 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39730 SAMTools SNP 38178 38178 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C77:41 scaffold39730 SAMTools SNP 38205 38205 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39730 SAMTools SNP 46236 46236 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.63%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold39730 SAMTools SNP 46638 46638 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D70.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C98:99 scaffold39730 SAMTools SNP 46653 46653 71.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold39730 SAMTools SNP 46783 46783 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39730 SAMTools SNP 46790 46790 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39730 SAMTools SNP 46794 46794 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39730 SAMTools SNP 48053 48053 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C0.4%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39730 SAMTools SNP 48066 48066 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0048%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold39730 SAMTools SNP 49025 49025 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39730 SAMTools SNP 49031 49031 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39730 SAMTools SNP 49033 49033 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39730 SAMTools SNP 49686 49686 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 49724 49724 143 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C79%2C190%2C0%2C184:27 scaffold39730 SAMTools SNP 49919 49919 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold39730 SAMTools SNP 50133 50133 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold39730 SAMTools SNP 51077 51077 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39730 SAMTools SNP 51107 51107 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C0.063%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold39730 SAMTools SNP 51143 51143 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold39730 SAMTools SNP 51357 51357 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39730 SAMTools SNP 51375 51375 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.39%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold39730 SAMTools SNP 51387 51387 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C16%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0011%2C2.6e-12%2C1%2C6.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold39730 SAMTools SNP 51389 51389 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.029%2C1.1e-07%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold39730 SAMTools SNP 53835 53835 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39730 SAMTools SNP 53875 53875 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 53889 53889 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 55179 55179 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold39730 SAMTools SNP 55433 55433 189 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold39730 SAMTools SNP 55442 55442 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39730 SAMTools SNP 55869 55869 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39730 SAMTools SNP 55895 55895 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.013%2C0.38%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C228:52 scaffold39730 SAMTools SNP 56013 56013 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold39730 SAMTools SNP 56058 56058 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39730 SAMTools SNP 56246 56246 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.19%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold39730 SAMTools SNP 56270 56270 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.27%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C109:99 scaffold39730 SAMTools SNP 57101 57101 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39730 SAMTools SNP 57190 57190 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 57254 57254 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C21%2C0:39 scaffold39730 SAMTools SNP 57935 57935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39730 SAMTools SNP 57983 57983 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D46.8%3BPV4%3D0.4%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C74:77 scaffold39730 SAMTools SNP 57998 57998 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold39730 SAMTools SNP 58019 58019 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold39730 SAMTools SNP 59305 59305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold39730 SAMTools SNP 59524 59524 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C3%2C15%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold39730 SAMTools SNP 60435 60435 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold39730 SAMTools SNP 60898 60898 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39730 SAMTools SNP 60996 60996 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C12%2C6%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.52%2C7.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold39730 SAMTools SNP 61005 61005 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold39730 SAMTools SNP 61522 61522 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39730 SAMTools SNP 61908 61908 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold39730 SAMTools SNP 62251 62251 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C51:54 scaffold39730 SAMTools SNP 63566 63566 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold39730 SAMTools SNP 64125 64125 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C134:99 scaffold39730 SAMTools SNP 64135 64135 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C66:52 scaffold39730 SAMTools SNP 64137 64137 41.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C30%2C24%2C72%2C0%2C69:10 scaffold39730 SAMTools SNP 64654 64654 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold39730 SAMTools SNP 64708 64708 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39730 SAMTools SNP 64786 64786 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C42%2C0:81 scaffold39730 SAMTools SNP 65326 65326 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 65359 65359 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold39730 SAMTools SNP 65786 65786 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C27%2C0:51 scaffold39730 SAMTools SNP 65933 65933 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold39730 SAMTools SNP 67735 67735 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 67752 67752 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39730 SAMTools SNP 68670 68670 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 68691 68691 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39730 SAMTools SNP 69468 69468 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold39730 SAMTools SNP 69520 69520 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39730 SAMTools SNP 70547 70547 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39730 SAMTools SNP 70550 70550 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39730 SAMTools SNP 70910 70910 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold39730 SAMTools SNP 70937 70937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39730 SAMTools SNP 72653 72653 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39730 SAMTools SNP 72668 72668 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39730 SAMTools SNP 73082 73082 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold39730 SAMTools SNP 73094 73094 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.25%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold39730 SAMTools SNP 73778 73778 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold39730 SAMTools SNP 73838 73838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39730 SAMTools SNP 73856 73856 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C16%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold39730 SAMTools SNP 75547 75547 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39730 SAMTools SNP 76148 76148 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39730 SAMTools SNP 76508 76508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C21%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold39730 SAMTools SNP 76514 76514 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.039%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold39732 SAMTools SNP 31499 31499 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C108%2C0:99 scaffold39732 SAMTools SNP 31562 31562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39732 SAMTools SNP 31577 31577 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C33%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold39732 SAMTools SNP 34671 34671 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C216%2C19%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39732 SAMTools SNP 36229 36229 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C61%2C23%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39732 SAMTools SNP 38333 38333 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C61%3BMQ%3D49%3BFQ%3D180%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold39732 SAMTools SNP 38342 38342 21 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C201%2C255%2C0%2C247:72 scaffold39732 SAMTools SNP 38364 38364 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39732 SAMTools SNP 38380 38380 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39732 SAMTools SNP 38440 38440 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39732 SAMTools SNP 39564 39564 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39732 SAMTools SNP 39917 39917 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39732 SAMTools SNP 39942 39942 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C82%2C0%2C44%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold39732 SAMTools SNP 40013 40013 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39732 SAMTools SNP 40019 40019 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39732 SAMTools SNP 40322 40322 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39732 SAMTools SNP 40341 40341 90.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0302%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.021%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C14:17 scaffold39732 SAMTools SNP 41329 41329 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold39732 SAMTools SNP 41346 41346 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold39732 SAMTools SNP 42227 42227 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold39732 SAMTools SNP 43451 43451 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold39732 SAMTools SNP 50846 50846 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold39732 SAMTools SNP 50872 50872 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39732 SAMTools SNP 50945 50945 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39732 SAMTools SNP 50984 50984 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39732 SAMTools SNP 51343 51343 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold39732 SAMTools SNP 53829 53829 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold39732 SAMTools SNP 54160 54160 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39732 SAMTools SNP 55621 55621 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold39732 SAMTools SNP 55725 55725 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold39732 SAMTools SNP 61811 61811 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold39732 SAMTools SNP 62058 62058 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.061%2C0.00094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C243:99 scaffold39732 SAMTools SNP 62073 62073 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold39732 SAMTools SNP 63763 63763 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold39732 SAMTools SNP 64319 64319 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold39732 SAMTools SNP 64471 64471 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C16%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.00056%2C6.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold39732 SAMTools SNP 64497 64497 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C4%2C3%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.69%2C0.41%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold39732 SAMTools SNP 64807 64807 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C7%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold39732 SAMTools SNP 64851 64851 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C6%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.5%2C5.5e-05%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold39732 SAMTools SNP 65297 65297 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39732 SAMTools SNP 65309 65309 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39732 SAMTools SNP 65529 65529 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold39732 SAMTools SNP 65609 65609 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C120:40 scaffold39732 SAMTools SNP 65654 65654 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold39732 SAMTools SNP 67865 67865 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold39732 SAMTools SNP 68038 68038 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold39732 SAMTools SNP 68063 68063 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.073%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold39732 SAMTools SNP 68311 68311 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold39732 SAMTools SNP 68341 68341 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39732 SAMTools SNP 68347 68347 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C18%2C0:33 scaffold39732 SAMTools SNP 69193 69193 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39732 SAMTools SNP 69548 69548 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39732 SAMTools SNP 69772 69772 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.26%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold39732 SAMTools SNP 69823 69823 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold39732 SAMTools SNP 69834 69834 41.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold39732 SAMTools SNP 70089 70089 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.007%2C0.37%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold39732 SAMTools SNP 70140 70140 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold39732 SAMTools SNP 70187 70187 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.37%2C0.003%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C119:64 scaffold39732 SAMTools SNP 70443 70443 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold39732 SAMTools SNP 72879 72879 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39732 SAMTools SNP 73463 73463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold39732 SAMTools SNP 73474 73474 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold39732 SAMTools SNP 74437 74437 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold39732 SAMTools SNP 74952 74952 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39740 SAMTools SNP 624 624 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold39740 SAMTools SNP 630 630 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39740 SAMTools SNP 694 694 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold39740 SAMTools SNP 853 853 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold39740 SAMTools SNP 901 901 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold39740 SAMTools SNP 943 943 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C31%2C32%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0083%2C9.6e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold39740 SAMTools SNP 1072 1072 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C37%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C4.4e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39740 SAMTools SNP 1216 1216 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C9.3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold39740 SAMTools SNP 1399 1399 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C43%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39740 SAMTools SNP 1405 1405 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C43%2C1%2C30%3BMQ%3D50%3BFQ%3D122%3BPV4%3D2.9e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold39740 SAMTools SNP 1480 1480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39740 SAMTools SNP 2118 2118 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold39740 SAMTools SNP 7381 7381 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold39740 SAMTools SNP 7415 7415 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold39740 SAMTools SNP 7612 7612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39740 SAMTools SNP 9408 9408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C162%2C29%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39740 SAMTools SNP 9449 9449 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C13%2C27%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.1%2C0.0021%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold39740 SAMTools SNP 9758 9758 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C19%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.6%2C3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold39740 SAMTools SNP 15045 15045 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C244:99 scaffold39740 SAMTools SNP 15755 15755 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.017%2C8.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold39740 SAMTools SNP 16076 16076 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C210:99 scaffold39740 SAMTools SNP 17261 17261 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39740 SAMTools SNP 17285 17285 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39740 SAMTools SNP 18184 18184 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39740 SAMTools SNP 18187 18187 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39740 SAMTools SNP 18190 18190 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39740 SAMTools SNP 18549 18549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold39740 SAMTools SNP 18615 18615 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C210:53 scaffold39740 SAMTools SNP 18627 18627 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold39740 SAMTools SNP 19149 19149 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39740 SAMTools SNP 19164 19164 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold39740 SAMTools SNP 19600 19600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39740 SAMTools SNP 19639 19639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39740 SAMTools SNP 20128 20128 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39740 SAMTools SNP 20152 20152 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.54%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold39740 SAMTools SNP 20381 20381 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C56%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold39740 SAMTools SNP 20402 20402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold39740 SAMTools SNP 20664 20664 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39740 SAMTools SNP 21121 21121 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold39740 SAMTools SNP 22361 22361 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.024%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39740 SAMTools SNP 23099 23099 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00055%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39740 SAMTools SNP 23112 23112 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C0%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold39740 SAMTools SNP 40375 40375 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39740 SAMTools SNP 55700 55700 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold39740 SAMTools SNP 55737 55737 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold39740 SAMTools SNP 57037 57037 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C3.4e-07%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C236:63 scaffold39740 SAMTools SNP 57326 57326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39740 SAMTools SNP 60539 60539 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold39740 SAMTools SNP 65979 65979 24.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold39740 SAMTools SNP 66975 66975 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold39740 SAMTools SNP 71798 71798 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C45:48 scaffold39740 SAMTools SNP 72345 72345 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold39740 SAMTools SNP 73557 73557 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C2%3BMQ%3D42%3BFQ%3D96%3BPV4%3D0.3%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold39740 SAMTools SNP 75312 75312 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.12%2C0.0094%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold39740 SAMTools SNP 75348 75348 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold39740 SAMTools SNP 75664 75664 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold39740 SAMTools SNP 75691 75691 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39740 SAMTools SNP 75889 75889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39744 SAMTools SNP 4608 4608 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39744 SAMTools SNP 5114 5114 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold39744 SAMTools SNP 5156 5156 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold39744 SAMTools SNP 5163 5163 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold39744 SAMTools SNP 5292 5292 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C0.32%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold39744 SAMTools SNP 5301 5301 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C8:11 scaffold39744 SAMTools SNP 5329 5329 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.3%2C0.0041%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold39744 SAMTools SNP 5452 5452 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C30%2C7%2C38%3BMQ%3D50%3BFQ%3D205%3BPV4%3D8.2e-15%2C0.16%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold39744 SAMTools SNP 5510 5510 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C136%2C3%2C202%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 5655 5655 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C258%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39744 SAMTools SNP 6231 6231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold39744 SAMTools SNP 6381 6381 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.032%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold39744 SAMTools SNP 6472 6472 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C29%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0022%2C1%2C1%2C9.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold39744 SAMTools SNP 6672 6672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C16%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 6817 6817 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C16%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 6874 6874 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C15%2C12%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.026%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C198:99 scaffold39744 SAMTools SNP 6982 6982 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39744 SAMTools SNP 7308 7308 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39744 SAMTools SNP 7808 7808 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.071%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold39744 SAMTools SNP 10885 10885 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39744 SAMTools SNP 10912 10912 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold39744 SAMTools SNP 11455 11455 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.031%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold39744 SAMTools SNP 11462 11462 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0068%2C0.00063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold39744 SAMTools SNP 12635 12635 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 18808 18808 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39744 SAMTools SNP 18844 18844 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold39744 SAMTools SNP 18877 18877 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.48%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold39744 SAMTools SNP 19085 19085 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C218:99 scaffold39744 SAMTools SNP 19094 19094 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold39744 SAMTools SNP 19106 19106 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39744 SAMTools SNP 19382 19382 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold39744 SAMTools SNP 19683 19683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39744 SAMTools SNP 19725 19725 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.059%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C96:99 scaffold39744 SAMTools SNP 19845 19845 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold39744 SAMTools SNP 20214 20214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39744 SAMTools SNP 20631 20631 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold39744 SAMTools SNP 20820 20820 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39744 SAMTools SNP 31162 31162 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39744 SAMTools SNP 31164 31164 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39744 SAMTools SNP 31543 31543 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold39744 SAMTools SNP 37820 37820 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold39744 SAMTools SNP 39053 39053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C23%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 39085 39085 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold39744 SAMTools SNP 43267 43267 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold39744 SAMTools SNP 43268 43268 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0034%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold39744 SAMTools SNP 43500 43500 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39744 SAMTools SNP 43885 43885 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39744 SAMTools SNP 44330 44330 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39744 SAMTools SNP 45387 45387 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold39744 SAMTools SNP 45412 45412 92.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C18%2C0:33 scaffold39744 SAMTools SNP 46991 46991 64.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C6:9 scaffold39744 SAMTools SNP 47003 47003 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.14%2C4.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold39744 SAMTools SNP 47498 47498 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39744 SAMTools SNP 47531 47531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39744 SAMTools SNP 49964 49964 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold39744 SAMTools SNP 50012 50012 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold39744 SAMTools SNP 50026 50026 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold39744 SAMTools SNP 50132 50132 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold39744 SAMTools SNP 50167 50167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 50629 50629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 51739 51739 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.019%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C234:54 scaffold39744 SAMTools SNP 51763 51763 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39744 SAMTools SNP 52578 52578 203 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C19%2C252%2C0%2C249:39 scaffold39744 SAMTools SNP 52590 52590 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39744 SAMTools SNP 52656 52656 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39744 SAMTools SNP 52817 52817 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39744 SAMTools SNP 52871 52871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold39744 SAMTools SNP 53118 53118 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.02%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold39744 SAMTools SNP 57442 57442 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C37%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.038%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold39744 SAMTools SNP 62096 62096 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold39744 SAMTools SNP 62818 62818 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C48%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 62884 62884 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39744 SAMTools SNP 62894 62894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold39744 SAMTools SNP 66446 66446 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C46%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold39744 SAMTools SNP 66921 66921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold39744 SAMTools SNP 67339 67339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39744 SAMTools SNP 67370 67370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold39744 SAMTools SNP 68445 68445 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold39744 SAMTools SNP 68470 68470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39744 SAMTools SNP 68485 68485 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C75%2C0:99 scaffold39744 SAMTools SNP 69038 69038 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C2e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold39744 SAMTools SNP 77049 77049 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39754 SAMTools SNP 3252 3252 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C60:63 scaffold39754 SAMTools SNP 3750 3750 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C218:99 scaffold39754 SAMTools SNP 4918 4918 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold39754 SAMTools SNP 4938 4938 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.042%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold39754 SAMTools SNP 9467 9467 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39754 SAMTools SNP 9479 9479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39754 SAMTools SNP 11098 11098 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C236:99 scaffold39754 SAMTools SNP 22268 22268 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C20%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C2.3e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold39754 SAMTools SNP 23259 23259 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold39754 SAMTools SNP 23410 23410 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.2e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C104:53 scaffold39754 SAMTools SNP 23478 23478 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C38:41 scaffold39754 SAMTools SNP 25039 25039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39754 SAMTools SNP 25487 25487 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold39754 SAMTools SNP 26398 26398 80.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold39754 SAMTools SNP 26432 26432 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.25%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39754 SAMTools SNP 26939 26939 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39754 SAMTools SNP 26947 26947 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.045%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold39754 SAMTools SNP 27648 27648 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold39754 SAMTools SNP 27669 27669 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold39754 SAMTools SNP 28663 28663 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39754 SAMTools SNP 28774 28774 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.29%2C0.00043%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold39754 SAMTools SNP 29335 29335 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold39754 SAMTools SNP 30101 30101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C2%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold39754 SAMTools SNP 31279 31279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C29%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 32805 32805 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C179:99 scaffold39754 SAMTools SNP 32896 32896 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C21%2C0:39 scaffold39754 SAMTools SNP 32914 32914 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39754 SAMTools SNP 33416 33416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold39754 SAMTools SNP 33613 33613 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39754 SAMTools SNP 34673 34673 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39754 SAMTools SNP 35243 35243 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.091%2C0.0017%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C234:99 scaffold39754 SAMTools SNP 36079 36079 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold39754 SAMTools SNP 36602 36602 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.0098%2C1%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold39754 SAMTools SNP 36616 36616 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39754 SAMTools SNP 36656 36656 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.21%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold39754 SAMTools SNP 36887 36887 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C17%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold39754 SAMTools SNP 38185 38185 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.53%2C0.056%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold39754 SAMTools SNP 38226 38226 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 38687 38687 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold39754 SAMTools SNP 39586 39586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39754 SAMTools SNP 39631 39631 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.077%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold39754 SAMTools SNP 39700 39700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 39886 39886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39754 SAMTools SNP 39916 39916 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.61%2C0.012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold39754 SAMTools SNP 40202 40202 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold39754 SAMTools SNP 40220 40220 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.043%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold39754 SAMTools SNP 40772 40772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C23%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 42077 42077 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C247:99 scaffold39754 SAMTools SNP 42104 42104 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C22%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.023%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C178:99 scaffold39754 SAMTools SNP 42363 42363 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold39754 SAMTools SNP 43914 43914 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold39754 SAMTools SNP 43938 43938 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold39754 SAMTools SNP 43950 43950 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold39754 SAMTools SNP 44243 44243 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C152:99 scaffold39754 SAMTools SNP 44382 44382 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39754 SAMTools SNP 44429 44429 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39754 SAMTools SNP 45828 45828 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold39754 SAMTools SNP 45913 45913 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39754 SAMTools SNP 45979 45979 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 46151 46151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C12%2C11%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold39754 SAMTools SNP 47914 47914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39754 SAMTools SNP 47930 47930 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold39754 SAMTools SNP 48221 48221 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39754 SAMTools SNP 48789 48789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold39754 SAMTools SNP 51292 51292 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C38:41 scaffold39754 SAMTools SNP 51439 51439 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C107:99 scaffold39754 SAMTools SNP 51972 51972 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.087%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39754 SAMTools SNP 53345 53345 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold39754 SAMTools SNP 53377 53377 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold39754 SAMTools SNP 53615 53615 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39754 SAMTools SNP 53990 53990 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold39754 SAMTools SNP 56530 56530 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold39754 SAMTools SNP 56553 56553 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C69:72 scaffold39754 SAMTools SNP 56653 56653 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39754 SAMTools SNP 56672 56672 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.43%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C237:99 scaffold39754 SAMTools SNP 56727 56727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.15%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39754 SAMTools SNP 57328 57328 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold39754 SAMTools SNP 57391 57391 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold39754 SAMTools SNP 57403 57403 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold39754 SAMTools SNP 57636 57636 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold39754 SAMTools SNP 58571 58571 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold39754 SAMTools SNP 58637 58637 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C162:99 scaffold39754 SAMTools SNP 59357 59357 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39754 SAMTools SNP 59763 59763 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold39754 SAMTools SNP 60235 60235 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold39754 SAMTools SNP 60662 60662 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.5%2C3.8e-05%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C223:64 scaffold39754 SAMTools SNP 60695 60695 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold39754 SAMTools SNP 61685 61685 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.24%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold39754 SAMTools SNP 61724 61724 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold39754 SAMTools SNP 62386 62386 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C198:99 scaffold39754 SAMTools SNP 63412 63412 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold39754 SAMTools SNP 63437 63437 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39754 SAMTools SNP 65049 65049 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold39754 SAMTools SNP 67758 67758 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold39754 SAMTools SNP 67807 67807 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold39754 SAMTools SNP 67835 67835 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.0012%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C172:86 scaffold39754 SAMTools SNP 69152 69152 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.47%2C0.21%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C214:99 scaffold39754 SAMTools SNP 69169 69169 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold39758 SAMTools SNP 1920 1920 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39758 SAMTools SNP 5737 5737 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold39758 SAMTools SNP 15632 15632 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39758 SAMTools SNP 21597 21597 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold39758 SAMTools SNP 31650 31650 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C61%2C47%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-09%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39758 SAMTools SNP 31755 31755 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C49%2C20%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00097%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold39758 SAMTools SNP 31758 31758 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C49%2C20%2C3%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold39758 SAMTools SNP 45975 45975 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold39758 SAMTools SNP 63816 63816 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C6%2C7%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.19%2C3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold39758 SAMTools SNP 66576 66576 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0016%2C7.9e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold39758 SAMTools SNP 67486 67486 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold39758 SAMTools SNP 74709 74709 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7489%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C2128%2C408%3BMQ%3D30%3BFQ%3D-282%3BPV4%3D1%2C1.8e-64%2C0.01%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C255%2C0:99 scaffold39778 SAMTools SNP 8566 8566 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39778 SAMTools SNP 8616 8616 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 9189 9189 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 12795 12795 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 12800 12800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 18031 18031 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.57%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C187:55 scaffold39778 SAMTools SNP 23125 23125 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.49%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold39778 SAMTools SNP 23188 23188 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold39778 SAMTools SNP 23213 23213 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39778 SAMTools SNP 23218 23218 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39778 SAMTools SNP 23652 23652 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 24894 24894 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold39778 SAMTools SNP 25363 25363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39778 SAMTools SNP 25402 25402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 25850 25850 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 25856 25856 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold39778 SAMTools SNP 27378 27378 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C11%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.67%2C5.5e-37%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold39778 SAMTools SNP 27439 27439 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C54%2C0:99 scaffold39778 SAMTools SNP 27563 27563 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.64%2C2.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold39778 SAMTools SNP 27927 27927 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold39778 SAMTools SNP 28772 28772 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C21%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C243:34 scaffold39778 SAMTools SNP 33659 33659 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold39778 SAMTools SNP 34405 34405 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C11%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D5.8e-05%2C8.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold39778 SAMTools SNP 40791 40791 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 40803 40803 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 41049 41049 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C18%2C1%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-24%2C1%2C1%2C2.3e-63;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 41278 41278 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C5.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C172:56 scaffold39778 SAMTools SNP 44384 44384 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.35%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold39778 SAMTools SNP 44416 44416 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold39778 SAMTools SNP 44766 44766 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold39778 SAMTools SNP 47746 47746 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.088%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold39778 SAMTools SNP 47796 47796 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold39778 SAMTools SNP 49042 49042 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold39778 SAMTools SNP 49208 49208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold39778 SAMTools SNP 49233 49233 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold39778 SAMTools SNP 49665 49665 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold39778 SAMTools SNP 50067 50067 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D761%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C311%2C74%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1.8e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 50154 50154 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D658%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C12%2C19%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.28%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold39778 SAMTools SNP 50639 50639 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39778 SAMTools SNP 50806 50806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39778 SAMTools SNP 50813 50813 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C48%2C18%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.0054%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold39778 SAMTools SNP 51713 51713 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C55%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 51749 51749 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold39778 SAMTools SNP 51778 51778 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C27%2C0:51 scaffold39778 SAMTools SNP 51865 51865 55.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold39778 SAMTools SNP 52323 52323 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold39778 SAMTools SNP 56738 56738 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C38:41 scaffold39778 SAMTools SNP 56841 56841 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C29:32 scaffold39778 SAMTools SNP 57380 57380 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C15%2C0:27 scaffold39778 SAMTools SNP 57680 57680 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold39778 SAMTools SNP 58012 58012 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39778 SAMTools SNP 58161 58161 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39778 SAMTools SNP 58178 58178 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold39778 SAMTools SNP 58446 58446 57.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold39778 SAMTools SNP 58557 58557 55.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold39778 SAMTools SNP 58777 58777 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.21%2C0.5%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold39778 SAMTools SNP 58795 58795 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold39778 SAMTools SNP 59401 59401 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39778 SAMTools SNP 59416 59416 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C2:87 scaffold39778 SAMTools SNP 59461 59461 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.33%2C0.096%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold39778 SAMTools SNP 61314 61314 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39778 SAMTools SNP 64515 64515 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39778 SAMTools SNP 64584 64584 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39778 SAMTools SNP 66057 66057 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39778 SAMTools SNP 70316 70316 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C50%2C0%2C34%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.00015%2C1%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold39778 SAMTools SNP 70657 70657 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C0%2C41%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.064%2C1%2C0.13%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold39778 SAMTools SNP 70701 70701 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C240:99 scaffold39778 SAMTools SNP 70725 70725 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39778 SAMTools SNP 72010 72010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D687%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C439%2C248%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39778 SAMTools SNP 72858 72858 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1400%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C752%2C240%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39778 SAMTools SNP 72886 72886 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D872%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.034%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold39778 SAMTools SNP 72922 72922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D858%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39778 SAMTools SNP 73873 73873 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C121%2C47%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C3.6e-19%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39778 SAMTools SNP 77596 77596 64 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C60%2C0%2C87%2C37%2C84:99 scaffold39790 SAMTools SNP 1972 1972 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold39790 SAMTools SNP 2301 2301 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold39790 SAMTools SNP 16427 16427 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold39790 SAMTools SNP 17319 17319 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D4.77%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold39790 SAMTools SNP 17421 17421 8.87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C15%2C0:19 scaffold398 SAMTools SNP 41447 41447 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold398 SAMTools SNP 41982 41982 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold398 SAMTools SNP 41996 41996 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold398 SAMTools SNP 42210 42210 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold398 SAMTools SNP 42414 42414 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold398 SAMTools SNP 42685 42685 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold398 SAMTools SNP 42965 42965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold398 SAMTools SNP 43830 43830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold398 SAMTools SNP 44870 44870 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold398 SAMTools SNP 45121 45121 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold398 SAMTools SNP 45122 45122 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold398 SAMTools SNP 45142 45142 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold398 SAMTools SNP 45219 45219 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold398 SAMTools SNP 45442 45442 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.14%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold398 SAMTools SNP 45449 45449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold398 SAMTools SNP 45462 45462 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold398 SAMTools SNP 45486 45486 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold398 SAMTools SNP 46186 46186 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C16%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.0017%2C0.077%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold398 SAMTools SNP 46225 46225 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C19%3BMQ%3D45%3BFQ%3D155%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C182:99 scaffold398 SAMTools SNP 46403 46403 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C0%2C1%3BMQ%3D18%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold398 SAMTools SNP 47423 47423 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold398 SAMTools SNP 47823 47823 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold398 SAMTools SNP 47919 47919 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold398 SAMTools SNP 49136 49136 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold398 SAMTools SNP 77572 77572 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold398 SAMTools SNP 77623 77623 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold398 SAMTools SNP 78629 78629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold398 SAMTools SNP 78676 78676 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold398 SAMTools SNP 78737 78737 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold398 SAMTools SNP 78750 78750 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold398 SAMTools SNP 83134 83134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold398 SAMTools SNP 83236 83236 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold398 SAMTools SNP 83343 83343 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C17%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.0076%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold398 SAMTools SNP 83672 83672 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold398 SAMTools SNP 84136 84136 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold398 SAMTools SNP 84343 84343 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C13%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.068%2C0.0013%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold398 SAMTools SNP 84373 84373 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.054%2C0.014%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold398 SAMTools SNP 84376 84376 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.066%2C0.45%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold398 SAMTools SNP 85596 85596 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.56%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold398 SAMTools SNP 85608 85608 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold398 SAMTools SNP 87890 87890 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C27%2C0:51 scaffold398 SAMTools SNP 94187 94187 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold398 SAMTools SNP 95199 95199 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.19%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C215:77 scaffold39800 SAMTools SNP 5793 5793 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39800 SAMTools SNP 7511 7511 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39800 SAMTools SNP 7807 7807 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold39800 SAMTools SNP 54058 54058 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C108:99 scaffold39800 SAMTools SNP 54120 54120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 54147 54147 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C48%2C37%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39800 SAMTools SNP 55698 55698 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C120%2C21%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C4.5e-07%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39800 SAMTools SNP 55752 55752 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C64%2C0%2C33%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold39800 SAMTools SNP 58116 58116 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold39800 SAMTools SNP 58118 58118 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39800 SAMTools SNP 58136 58136 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 58740 58740 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C358%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 59741 59741 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39800 SAMTools SNP 59744 59744 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39800 SAMTools SNP 59753 59753 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold39800 SAMTools SNP 59783 59783 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C252%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 60064 60064 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C152%2C339%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C0.28%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 61261 61261 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C109%2C390%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39800 SAMTools SNP 61270 61270 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C341%2C14%2C46%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.61%2C0.0013%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold39800 SAMTools SNP 64185 64185 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C231:37 scaffold39804 SAMTools SNP 11818 11818 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold39804 SAMTools SNP 13374 13374 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 13395 13395 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 16193 16193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 20521 20521 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold39804 SAMTools SNP 35112 35112 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C166:99 scaffold39804 SAMTools SNP 35175 35175 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C4.9e-11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C210:99 scaffold39804 SAMTools SNP 35220 35220 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C6.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C218:43 scaffold39804 SAMTools SNP 35565 35565 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold39804 SAMTools SNP 36622 36622 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39804 SAMTools SNP 37487 37487 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39804 SAMTools SNP 37513 37513 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold39804 SAMTools SNP 45309 45309 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C94:52 scaffold39804 SAMTools SNP 46585 46585 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39804 SAMTools SNP 46883 46883 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39804 SAMTools SNP 47340 47340 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold39804 SAMTools SNP 47361 47361 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 48552 48552 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 49701 49701 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39804 SAMTools SNP 59244 59244 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39804 SAMTools SNP 59262 59262 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39804 SAMTools SNP 59525 59525 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold39804 SAMTools SNP 59546 59546 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39804 SAMTools SNP 60534 60534 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C7%2C63%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.35%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39804 SAMTools SNP 62203 62203 51.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold39804 SAMTools SNP 62552 62552 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C129:41 scaffold39804 SAMTools SNP 63622 63622 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold39804 SAMTools SNP 63740 63740 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C22%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D9.9e-05%2C1.7e-10%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold39804 SAMTools SNP 64302 64302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold39804 SAMTools SNP 64353 64353 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39804 SAMTools SNP 65602 65602 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C193:65 scaffold39804 SAMTools SNP 65641 65641 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0031%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold39804 SAMTools SNP 66388 66388 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39804 SAMTools SNP 66397 66397 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39804 SAMTools SNP 66463 66463 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold39804 SAMTools SNP 66481 66481 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C134:99 scaffold39804 SAMTools SNP 66484 66484 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C241:99 scaffold39804 SAMTools SNP 66514 66514 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C242:99 scaffold39804 SAMTools SNP 67312 67312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 706 706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 710 710 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 864 864 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 886 886 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 19062 19062 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39858 SAMTools SNP 19086 19086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39878 SAMTools SNP 1857 1857 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C3%2C7%3BMQ%3D34%3BFQ%3D102%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C195:99 scaffold39878 SAMTools SNP 1914 1914 7.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D3%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C66%2C0:54 scaffold39878 SAMTools SNP 1920 1920 4.12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D3%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C57%2C0:39 scaffold39878 SAMTools SNP 2457 2457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C14%2C40%2C2%3BMQ%3D36%3BFQ%3D-63%3BPV4%3D1.3e-09%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39878 SAMTools SNP 4501 4501 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C237:88 scaffold39878 SAMTools SNP 8211 8211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C96%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 8223 8223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C90%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 9228 9228 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C0%2C13%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.56%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold39878 SAMTools SNP 9700 9700 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C0.2%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold39878 SAMTools SNP 9703 9703 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39878 SAMTools SNP 12445 12445 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 12523 12523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C19%3BMQ%3D49%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold39878 SAMTools SNP 12589 12589 63.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold39878 SAMTools SNP 12646 12646 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39878 SAMTools SNP 12651 12651 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39878 SAMTools SNP 14276 14276 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C16%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.48%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 19608 19608 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold39878 SAMTools SNP 20988 20988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C35%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 21012 21012 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39878 SAMTools SNP 27410 27410 9.97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold39878 SAMTools SNP 27559 27559 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold39878 SAMTools SNP 47097 47097 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39878 SAMTools SNP 47137 47137 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold39878 SAMTools SNP 47156 47156 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold39878 SAMTools SNP 47335 47335 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39878 SAMTools SNP 63171 63171 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold39880 SAMTools SNP 2942 2942 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39880 SAMTools SNP 3756 3756 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39880 SAMTools SNP 3795 3795 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39880 SAMTools SNP 5869 5869 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold39880 SAMTools SNP 5943 5943 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39880 SAMTools SNP 6783 6783 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39880 SAMTools SNP 6819 6819 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C8%3BMQ%3D49%3BFQ%3D139%3BPV4%3D0.53%2C1%2C0.081%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold39880 SAMTools SNP 6849 6849 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C196:72 scaffold39880 SAMTools SNP 6855 6855 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.28%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold39880 SAMTools SNP 6873 6873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.024%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold39880 SAMTools SNP 7582 7582 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.064%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold39880 SAMTools SNP 7634 7634 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00011%2C0.13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold39880 SAMTools SNP 8705 8705 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39880 SAMTools SNP 8786 8786 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C10%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.21%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold39880 SAMTools SNP 8789 8789 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C3%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.7%2C7.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold39880 SAMTools SNP 9360 9360 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C9%2C0%3BMQ%3D43%3BFQ%3D105%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold39880 SAMTools SNP 9369 9369 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C36%2C3%3BMQ%3D43%3BFQ%3D-68%3BPV4%3D1%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold39880 SAMTools SNP 9468 9468 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C2%2C14%3BMQ%3D40%3BFQ%3D182%3BPV4%3D0.7%2C0.47%2C0.25%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold39880 SAMTools SNP 10227 10227 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C3%2C59%3BMQ%3D42%3BFQ%3D-43%3BPV4%3D0.23%2C1%2C0.098%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold39880 SAMTools SNP 10326 10326 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39880 SAMTools SNP 11445 11445 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39880 SAMTools SNP 11539 11539 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold39880 SAMTools SNP 11567 11567 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold39880 SAMTools SNP 12244 12244 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold39880 SAMTools SNP 12402 12402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold39880 SAMTools SNP 13183 13183 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold39880 SAMTools SNP 38536 38536 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39884 SAMTools SNP 4214 4214 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-3.28%3BPV4%3D1%2C3.2e-10%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C29:28 scaffold39884 SAMTools SNP 4421 4421 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C39%2C0:75 scaffold39884 SAMTools SNP 5221 5221 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39884 SAMTools SNP 5623 5623 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold39884 SAMTools SNP 5730 5730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39884 SAMTools SNP 5754 5754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.035%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold39884 SAMTools SNP 5989 5989 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold39884 SAMTools SNP 7254 7254 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39884 SAMTools SNP 7501 7501 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold39884 SAMTools SNP 7527 7527 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C12%2C41%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 7768 7768 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C44%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.037%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 7981 7981 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold39884 SAMTools SNP 7999 7999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 8151 8151 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.017%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold39884 SAMTools SNP 8198 8198 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.14%2C6e-16%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C208:60 scaffold39884 SAMTools SNP 11687 11687 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C81%2C0:99 scaffold39884 SAMTools SNP 12879 12879 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.17%2C4.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C207:89 scaffold39884 SAMTools SNP 13565 13565 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold39884 SAMTools SNP 14131 14131 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold39884 SAMTools SNP 14137 14137 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold39884 SAMTools SNP 14159 14159 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold39884 SAMTools SNP 14316 14316 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D49%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold39884 SAMTools SNP 15679 15679 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold39884 SAMTools SNP 15690 15690 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39884 SAMTools SNP 16933 16933 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 17514 17514 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold39884 SAMTools SNP 17926 17926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39884 SAMTools SNP 17947 17947 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.42%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold39884 SAMTools SNP 18163 18163 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 18794 18794 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39884 SAMTools SNP 18836 18836 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39884 SAMTools SNP 18850 18850 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold39884 SAMTools SNP 19229 19229 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C249:99 scaffold39884 SAMTools SNP 19231 19231 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0094%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold39884 SAMTools SNP 19364 19364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39884 SAMTools SNP 19391 19391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold39884 SAMTools SNP 20107 20107 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C238:99 scaffold39884 SAMTools SNP 20355 20355 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.14%2C0.13%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C140:69 scaffold39884 SAMTools SNP 20372 20372 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold39884 SAMTools SNP 20389 20389 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold39884 SAMTools SNP 20590 20590 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.024%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C146:99 scaffold39884 SAMTools SNP 21193 21193 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold39884 SAMTools SNP 21235 21235 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold39884 SAMTools SNP 21727 21727 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 38029 38029 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39884 SAMTools SNP 63587 63587 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39884 SAMTools SNP 76383 76383 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C30%2C0:57 scaffold39884 SAMTools SNP 76617 76617 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C22%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39884 SAMTools SNP 76922 76922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold39894 SAMTools SNP 5280 5280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 5338 5338 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 5378 5378 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39894 SAMTools SNP 37626 37626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39894 SAMTools SNP 37653 37653 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.037%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39894 SAMTools SNP 38247 38247 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C13%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.042%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold39894 SAMTools SNP 38253 38253 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C13%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.13%2C0.053%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold39894 SAMTools SNP 38271 38271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39894 SAMTools SNP 38319 38319 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C49%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39894 SAMTools SNP 40751 40751 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold39894 SAMTools SNP 43131 43131 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C50%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39894 SAMTools SNP 44595 44595 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 44604 44604 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39894 SAMTools SNP 44767 44767 55.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold39894 SAMTools SNP 44820 44820 64.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold39894 SAMTools SNP 44847 44847 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39894 SAMTools SNP 46469 46469 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 47143 47143 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 47293 47293 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold39894 SAMTools SNP 47747 47747 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39894 SAMTools SNP 47799 47799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold39894 SAMTools SNP 48219 48219 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold39894 SAMTools SNP 48293 48293 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold39894 SAMTools SNP 48574 48574 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold39894 SAMTools SNP 48643 48643 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold39894 SAMTools SNP 49313 49313 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 49349 49349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold39894 SAMTools SNP 50123 50123 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold39894 SAMTools SNP 50159 50159 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold39894 SAMTools SNP 51282 51282 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39894 SAMTools SNP 51318 51318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 51324 51324 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 51342 51342 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.027%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold39894 SAMTools SNP 53165 53165 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 53174 53174 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 53304 53304 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold39894 SAMTools SNP 53351 53351 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold39894 SAMTools SNP 53743 53743 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold39894 SAMTools SNP 53983 53983 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 57347 57347 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39894 SAMTools SNP 61564 61564 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold39894 SAMTools SNP 62094 62094 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold39894 SAMTools SNP 62103 62103 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold39894 SAMTools SNP 62578 62578 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold39894 SAMTools SNP 63040 63040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 63058 63058 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 63480 63480 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 63875 63875 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold39894 SAMTools SNP 64464 64464 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold39894 SAMTools SNP 64506 64506 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 65849 65849 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 65866 65866 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 65885 65885 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39894 SAMTools SNP 66647 66647 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold39894 SAMTools SNP 66673 66673 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold39894 SAMTools SNP 66754 66754 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold39894 SAMTools SNP 67129 67129 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold39894 SAMTools SNP 67138 67138 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold39894 SAMTools SNP 67161 67161 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C68:71 scaffold39894 SAMTools SNP 67186 67186 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold39894 SAMTools SNP 67975 67975 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold39894 SAMTools SNP 68011 68011 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold39894 SAMTools SNP 68038 68038 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C151%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.026%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39894 SAMTools SNP 68053 68053 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C172%2C1%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39894 SAMTools SNP 69357 69357 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold39894 SAMTools SNP 69362 69362 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C73:76 scaffold39894 SAMTools SNP 70086 70086 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold39894 SAMTools SNP 70088 70088 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C36:39 scaffold39894 SAMTools SNP 71349 71349 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 72340 72340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 72391 72391 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39894 SAMTools SNP 72809 72809 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold39894 SAMTools SNP 72865 72865 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 72871 72871 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39894 SAMTools SNP 74452 74452 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39894 SAMTools SNP 74469 74469 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 75247 75247 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39894 SAMTools SNP 75253 75253 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39894 SAMTools SNP 75280 75280 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39894 SAMTools SNP 75331 75331 18 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold39894 SAMTools SNP 75386 75386 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0064%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold39894 SAMTools SNP 76238 76238 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.21%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold399 SAMTools SNP 1170 1170 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 1744 1744 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold399 SAMTools SNP 1794 1794 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C142:99 scaffold399 SAMTools SNP 3088 3088 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold399 SAMTools SNP 6525 6525 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C6%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold399 SAMTools SNP 6994 6994 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C9%2C19%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold399 SAMTools SNP 7011 7011 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold399 SAMTools SNP 7053 7053 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C23%3BMQ%3D49%3BFQ%3D142%3BPV4%3D0.028%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold399 SAMTools SNP 8666 8666 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold399 SAMTools SNP 8707 8707 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold399 SAMTools SNP 8727 8727 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold399 SAMTools SNP 10768 10768 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 10790 10790 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 11179 11179 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold399 SAMTools SNP 11181 11181 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold399 SAMTools SNP 12706 12706 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.044%2C0.023%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold399 SAMTools SNP 13787 13787 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold399 SAMTools SNP 14505 14505 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.43%2C0.13%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold399 SAMTools SNP 14539 14539 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold399 SAMTools SNP 14711 14711 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C0.17%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold399 SAMTools SNP 14716 14716 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold399 SAMTools SNP 14719 14719 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.36%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold399 SAMTools SNP 15737 15737 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold399 SAMTools SNP 15774 15774 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C32%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D4.5e-10%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C233:99 scaffold399 SAMTools SNP 16275 16275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C18%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold399 SAMTools SNP 16290 16290 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold399 SAMTools SNP 17393 17393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C51%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold399 SAMTools SNP 17439 17439 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.62%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold399 SAMTools SNP 22435 22435 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0048%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold399 SAMTools SNP 22897 22897 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold399 SAMTools SNP 23008 23008 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.65%2C0.41%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold399 SAMTools SNP 23397 23397 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 23755 23755 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C11%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.032%2C3.2e-25%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold399 SAMTools SNP 23813 23813 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C30%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0061%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold399 SAMTools SNP 24517 24517 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold399 SAMTools SNP 29730 29730 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 30091 30091 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C8%2C20%2C8%3BMQ%3D45%3BFQ%3D153%3BPV4%3D0.07%2C1%2C0.04%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold399 SAMTools SNP 30152 30152 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C72%2C4%2C37%3BMQ%3D47%3BFQ%3D204%3BPV4%3D0.0035%2C1%2C0.0042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold399 SAMTools SNP 33444 33444 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C63%2C1%2C24%3BMQ%3D50%3BFQ%3D56%3BPV4%3D3.5e-06%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold399 SAMTools SNP 34125 34125 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold399 SAMTools SNP 36571 36571 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold399 SAMTools SNP 38113 38113 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold399 SAMTools SNP 41323 41323 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 41731 41731 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D4.2e-06%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold399 SAMTools SNP 41749 41749 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0031%2C0.0076%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold399 SAMTools SNP 41758 41758 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0081%2C0.079%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold399 SAMTools SNP 41781 41781 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold399 SAMTools SNP 42543 42543 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold399 SAMTools SNP 43025 43025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold399 SAMTools SNP 43049 43049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold399 SAMTools SNP 43271 43271 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C16%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1.7e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 43346 43346 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold399 SAMTools SNP 43368 43368 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C0%2C17%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.006%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold399 SAMTools SNP 44091 44091 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C18%2C21%3BMQ%3D48%3BFQ%3D177%3BPV4%3D0.0004%2C0.41%2C0.088%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold399 SAMTools SNP 44124 44124 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C17%2C13%3BMQ%3D47%3BFQ%3D165%3BPV4%3D0.023%2C0.23%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold399 SAMTools SNP 59326 59326 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold399 SAMTools SNP 62858 62858 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold399 SAMTools SNP 62948 62948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C52%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold399 SAMTools SNP 62993 62993 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold399 SAMTools SNP 63178 63178 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold399 SAMTools SNP 63211 63211 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 63236 63236 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold399 SAMTools SNP 63430 63430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold399 SAMTools SNP 63928 63928 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold399 SAMTools SNP 63991 63991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.44%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold399 SAMTools SNP 64151 64151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 64569 64569 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 64599 64599 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 65823 65823 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.61%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold399 SAMTools SNP 65856 65856 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold399 SAMTools SNP 65886 65886 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C0.047%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C119:99 scaffold399 SAMTools SNP 65898 65898 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.52%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold399 SAMTools SNP 65932 65932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C8%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold399 SAMTools SNP 66886 66886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold399 SAMTools SNP 66919 66919 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C15%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D8e-05%2C1%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold399 SAMTools SNP 66953 66953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold399 SAMTools SNP 67327 67327 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C29%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.023%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold399 SAMTools SNP 67366 67366 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold399 SAMTools SNP 67830 67830 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C239:99 scaffold399 SAMTools SNP 67833 67833 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C229:99 scaffold399 SAMTools SNP 75184 75184 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 77183 77183 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C5%2C0:9 scaffold399 SAMTools SNP 82766 82766 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.12%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold399 SAMTools SNP 82799 82799 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 82826 82826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 83259 83259 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold399 SAMTools SNP 83298 83298 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold399 SAMTools SNP 83705 83705 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold399 SAMTools SNP 84738 84738 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold399 SAMTools SNP 85169 85169 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold399 SAMTools SNP 85254 85254 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold399 SAMTools SNP 87754 87754 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 89696 89696 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold399 SAMTools SNP 89717 89717 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold399 SAMTools SNP 90278 90278 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold399 SAMTools SNP 90296 90296 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold399 SAMTools SNP 90672 90672 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 94548 94548 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.019%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold399 SAMTools SNP 94623 94623 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.051%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold399 SAMTools SNP 95030 95030 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.082%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold399 SAMTools SNP 95060 95060 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold399 SAMTools SNP 95075 95075 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.16%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold399 SAMTools SNP 95083 95083 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.055%2C7.3e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C251:42 scaffold399 SAMTools SNP 95085 95085 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C248:70 scaffold399 SAMTools SNP 95833 95833 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 96276 96276 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 98596 98596 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold399 SAMTools SNP 98797 98797 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 98828 98828 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold399 SAMTools SNP 98836 98836 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold399 SAMTools SNP 103218 103218 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold399 SAMTools SNP 103752 103752 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold399 SAMTools SNP 103770 103770 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 104567 104567 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 105439 105439 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 107461 107461 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold399 SAMTools SNP 114225 114225 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold399 SAMTools SNP 114240 114240 138 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C32%2C164%2C0%2C161:27 scaffold399 SAMTools SNP 114548 114548 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold399 SAMTools SNP 114822 114822 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold399 SAMTools SNP 114846 114846 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold399 SAMTools SNP 115954 115954 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 115956 115956 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 116180 116180 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 116263 116263 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 117489 117489 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold399 SAMTools SNP 118352 118352 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C26:29 scaffold399 SAMTools SNP 118436 118436 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C202:99 scaffold399 SAMTools SNP 118629 118629 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.2%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C196:74 scaffold399 SAMTools SNP 119797 119797 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold399 SAMTools SNP 120863 120863 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 120875 120875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 121317 121317 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold399 SAMTools SNP 121366 121366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold399 SAMTools SNP 122160 122160 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold399 SAMTools SNP 122175 122175 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold399 SAMTools SNP 123315 123315 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold399 SAMTools SNP 123317 123317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.066%2C0.26%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold399 SAMTools SNP 123330 123330 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold399 SAMTools SNP 123678 123678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C30%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold399 SAMTools SNP 123774 123774 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C81%2C0:99 scaffold399 SAMTools SNP 124520 124520 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 124551 124551 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold399 SAMTools SNP 125418 125418 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold399 SAMTools SNP 126356 126356 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold399 SAMTools SNP 170867 170867 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold399 SAMTools SNP 171182 171182 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold399 SAMTools SNP 197039 197039 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold399 SAMTools SNP 197040 197040 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold399 SAMTools SNP 211270 211270 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold399 SAMTools SNP 215239 215239 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C18:21 scaffold399 SAMTools SNP 215341 215341 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold399 SAMTools SNP 217708 217708 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold399 SAMTools SNP 219635 219635 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold399 SAMTools SNP 219908 219908 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C170:95 scaffold399 SAMTools SNP 222243 222243 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C30%2C9%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.49%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold399 SAMTools SNP 222247 222247 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C14%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C135:99 scaffold399 SAMTools SNP 223419 223419 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C59%2C15%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 223446 223446 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C68%2C12%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 226337 226337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold399 SAMTools SNP 228403 228403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C1%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold399 SAMTools SNP 228409 228409 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C22%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold399 SAMTools SNP 228423 228423 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold39900 SAMTools SNP 44143 44143 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39900 SAMTools SNP 44195 44195 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold39900 SAMTools SNP 45934 45934 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39900 SAMTools SNP 75534 75534 46.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold39946 SAMTools SNP 4309 4309 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39946 SAMTools SNP 5062 5062 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39946 SAMTools SNP 5450 5450 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold39946 SAMTools SNP 10786 10786 16.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold39946 SAMTools SNP 46101 46101 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold39946 SAMTools SNP 53449 53449 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39946 SAMTools SNP 53663 53663 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39946 SAMTools SNP 56683 56683 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold39946 SAMTools SNP 56695 56695 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold39946 SAMTools SNP 64869 64869 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold39946 SAMTools SNP 75199 75199 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold39946 SAMTools SNP 75231 75231 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.029%2C0.41%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold39946 SAMTools SNP 76218 76218 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C32%2C11%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.62%2C4.9e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold39946 SAMTools SNP 76398 76398 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C102%2C0:99 scaffold39946 SAMTools SNP 80875 80875 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C25%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold39946 SAMTools SNP 80893 80893 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39946 SAMTools SNP 81297 81297 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C3%2C0:6 scaffold39946 SAMTools SNP 81328 81328 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C3%2C0:6 scaffold39958 SAMTools SNP 19116 19116 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39958 SAMTools SNP 19134 19134 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39958 SAMTools SNP 19261 19261 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39958 SAMTools SNP 19278 19278 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39958 SAMTools SNP 20052 20052 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold39958 SAMTools SNP 43635 43635 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39958 SAMTools SNP 50425 50425 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39958 SAMTools SNP 51643 51643 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00026%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C100:77 scaffold39958 SAMTools SNP 51670 51670 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold39958 SAMTools SNP 66116 66116 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold39958 SAMTools SNP 74254 74254 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39958 SAMTools SNP 75509 75509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39958 SAMTools SNP 75512 75512 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.14%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold39958 SAMTools SNP 75979 75979 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39958 SAMTools SNP 76127 76127 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold39958 SAMTools SNP 76136 76136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39958 SAMTools SNP 76176 76176 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C57%2C0:99 scaffold39960 SAMTools SNP 1968 1968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39960 SAMTools SNP 1983 1983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39960 SAMTools SNP 3221 3221 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold39960 SAMTools SNP 12650 12650 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold39960 SAMTools SNP 12726 12726 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39960 SAMTools SNP 12741 12741 54.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold39960 SAMTools SNP 31076 31076 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39960 SAMTools SNP 31347 31347 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold39960 SAMTools SNP 31350 31350 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold39960 SAMTools SNP 31443 31443 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold39960 SAMTools SNP 32551 32551 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold39960 SAMTools SNP 38690 38690 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C202%2C3%2C141%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.74%2C2.6e-162%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold39960 SAMTools SNP 38699 38699 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C136%2C6%2C105%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.19%2C1.2e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold39960 SAMTools SNP 39461 39461 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C42%2C0%2C91%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.32%2C2.1e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C249:65 scaffold39960 SAMTools SNP 39880 39880 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C233:99 scaffold39960 SAMTools SNP 42763 42763 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold39960 SAMTools SNP 43921 43921 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold39960 SAMTools SNP 44431 44431 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C35:38 scaffold39960 SAMTools SNP 44990 44990 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C224:99 scaffold39960 SAMTools SNP 46931 46931 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D99.6%3BPV4%3D0.56%2C0.00016%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C128:99 scaffold39960 SAMTools SNP 47593 47593 164 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C15%2C0:27 scaffold39960 SAMTools SNP 54306 54306 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.45%2C1.5e-14%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C177:52 scaffold39960 SAMTools SNP 54395 54395 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C153:99 scaffold39960 SAMTools SNP 55317 55317 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold39960 SAMTools SNP 55871 55871 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold39960 SAMTools SNP 55889 55889 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.049%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold39960 SAMTools SNP 55913 55913 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.25%2C0.11%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C237:99 scaffold39960 SAMTools SNP 55946 55946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39960 SAMTools SNP 58109 58109 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold39960 SAMTools SNP 60033 60033 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold39960 SAMTools SNP 63191 63191 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold39960 SAMTools SNP 63209 63209 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold39960 SAMTools SNP 63317 63317 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39966 SAMTools SNP 126 126 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39966 SAMTools SNP 137 137 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold39966 SAMTools SNP 1653 1653 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.064%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold39966 SAMTools SNP 3672 3672 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C168:84 scaffold39966 SAMTools SNP 3938 3938 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold39966 SAMTools SNP 37616 37616 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39966 SAMTools SNP 37620 37620 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39966 SAMTools SNP 56788 56788 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold39966 SAMTools SNP 71272 71272 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39966 SAMTools SNP 72990 72990 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39966 SAMTools SNP 73019 73019 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39972 SAMTools SNP 264 264 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39972 SAMTools SNP 7342 7342 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold39972 SAMTools SNP 8939 8939 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold39972 SAMTools SNP 77767 77767 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39974 SAMTools SNP 69384 69384 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold39976 SAMTools SNP 13785 13785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39976 SAMTools SNP 13975 13975 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39976 SAMTools SNP 14004 14004 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39976 SAMTools SNP 20995 20995 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold39976 SAMTools SNP 21059 21059 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold39976 SAMTools SNP 70030 70030 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold39976 SAMTools SNP 73544 73544 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39976 SAMTools SNP 73548 73548 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39976 SAMTools SNP 77265 77265 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold39976 SAMTools SNP 77282 77282 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39984 SAMTools SNP 6201 6201 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39984 SAMTools SNP 6263 6263 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39984 SAMTools SNP 48902 48902 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39986 SAMTools SNP 6045 6045 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39986 SAMTools SNP 6082 6082 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39986 SAMTools SNP 16184 16184 48.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold39986 SAMTools SNP 37312 37312 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold39986 SAMTools SNP 38590 38590 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.46%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C197:99 scaffold39986 SAMTools SNP 43619 43619 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold39986 SAMTools SNP 44136 44136 47.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold39986 SAMTools SNP 44258 44258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold39986 SAMTools SNP 50896 50896 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39986 SAMTools SNP 53174 53174 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C10%3BMQ%3D47%3BFQ%3D187%3BPV4%3D1%2C7e-10%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold39986 SAMTools SNP 53991 53991 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39986 SAMTools SNP 53997 53997 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold39986 SAMTools SNP 54026 54026 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold39986 SAMTools SNP 54028 54028 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold39986 SAMTools SNP 57555 57555 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39986 SAMTools SNP 60789 60789 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C70%2C0%2C49%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C7.9e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold39986 SAMTools SNP 72808 72808 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39986 SAMTools SNP 72809 72809 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold39986 SAMTools SNP 73089 73089 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold39986 SAMTools SNP 73162 73162 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold39986 SAMTools SNP 73335 73335 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold39986 SAMTools SNP 75687 75687 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold39986 SAMTools SNP 75724 75724 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold39990 SAMTools SNP 19044 19044 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C20%2C37%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1.2e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold39990 SAMTools SNP 19340 19340 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold39990 SAMTools SNP 19359 19359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39990 SAMTools SNP 19999 19999 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold39990 SAMTools SNP 20035 20035 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C0.17%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold39990 SAMTools SNP 20433 20433 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold39990 SAMTools SNP 20673 20673 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold39990 SAMTools SNP 20687 20687 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold39990 SAMTools SNP 20856 20856 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold39990 SAMTools SNP 20895 20895 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold39990 SAMTools SNP 21029 21029 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold39990 SAMTools SNP 22170 22170 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold39990 SAMTools SNP 22299 22299 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold39990 SAMTools SNP 22375 22375 6.95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold39990 SAMTools SNP 22460 22460 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.067%2C3.8e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold39990 SAMTools SNP 22683 22683 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold39990 SAMTools SNP 30711 30711 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39990 SAMTools SNP 30713 30713 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C225:85 scaffold39990 SAMTools SNP 31592 31592 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C944%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 31637 31637 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C175%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 31992 31992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold39990 SAMTools SNP 32049 32049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D943%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C943%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 32067 32067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D943%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C942%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 35340 35340 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold39990 SAMTools SNP 45110 45110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 45118 45118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold39990 SAMTools SNP 45488 45488 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39990 SAMTools SNP 47032 47032 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C86%2C16%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1.3e-15%2C8.6e-20%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold39990 SAMTools SNP 51927 51927 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold39990 SAMTools SNP 51942 51942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold39990 SAMTools SNP 54419 54419 42.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold39990 SAMTools SNP 55646 55646 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold39990 SAMTools SNP 55947 55947 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C11%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.75%2C1.1e-41%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold39990 SAMTools SNP 57162 57162 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold39990 SAMTools SNP 57371 57371 15.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold39990 SAMTools SNP 57485 57485 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C51%2C0:99 scaffold39990 SAMTools SNP 73209 73209 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold39990 SAMTools SNP 76918 76918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C31%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold39990 SAMTools SNP 76975 76975 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold39990 SAMTools SNP 77014 77014 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C53%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C205%2C0:99 scaffold39990 SAMTools SNP 77165 77165 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39990 SAMTools SNP 77191 77191 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold39998 SAMTools SNP 1976 1976 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39998 SAMTools SNP 3280 3280 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold39998 SAMTools SNP 3994 3994 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold39998 SAMTools SNP 4221 4221 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold39998 SAMTools SNP 25487 25487 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold39998 SAMTools SNP 45544 45544 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold39998 SAMTools SNP 67088 67088 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold39998 SAMTools SNP 79088 79088 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold39998 SAMTools SNP 79707 79707 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold4 SAMTools SNP 138 138 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 255 255 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 1227 1227 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 11600 11600 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C18%2C2%3BMQ%3D33%3BFQ%3D135%3BPV4%3D0.34%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C162:99 scaffold4 SAMTools SNP 12020 12020 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D14%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C117%2C0:99 scaffold4 SAMTools SNP 15944 15944 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 15962 15962 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 17624 17624 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C80:64 scaffold4 SAMTools SNP 17816 17816 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold4 SAMTools SNP 18407 18407 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C18:21 scaffold4 SAMTools SNP 18769 18769 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.47%2C4.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C74:50 scaffold4 SAMTools SNP 19580 19580 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold4 SAMTools SNP 21417 21417 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold4 SAMTools SNP 27542 27542 148 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D786%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C410%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0%2C171%2C255%2C168:99 scaffold4 SAMTools SNP 28156 28156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C97%2C81%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 28966 28966 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3127%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C1480%2C127%2C118%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1.8e-47%2C0.00012%2C1%2C5.5e-55;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold4 SAMTools SNP 43356 43356 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 60428 60428 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C238:99 scaffold4 SAMTools SNP 61265 61265 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C102%2C103%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 61857 61857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C109%2C16%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 62053 62053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D244%2C12%2C112%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 65153 65153 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold4 SAMTools SNP 68036 68036 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold4 SAMTools SNP 68074 68074 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold4 SAMTools SNP 68576 68576 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold4 SAMTools SNP 68613 68613 137 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C30%2C12%2C161%2C0%2C158:33 scaffold4 SAMTools SNP 68617 68617 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C54:57 scaffold4 SAMTools SNP 68901 68901 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C127:99 scaffold4 SAMTools SNP 69345 69345 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold4 SAMTools SNP 70071 70071 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.18%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold4 SAMTools SNP 70338 70338 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold4 SAMTools SNP 70756 70756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold4 SAMTools SNP 71011 71011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold4 SAMTools SNP 71031 71031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold4 SAMTools SNP 71379 71379 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold4 SAMTools SNP 71385 71385 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold4 SAMTools SNP 71830 71830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C19%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold4 SAMTools SNP 72712 72712 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.38%2C0.27%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold4 SAMTools SNP 73167 73167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 73804 73804 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C2%2C14%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.041%2C1.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold4 SAMTools SNP 73822 73822 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold4 SAMTools SNP 73840 73840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C22%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.53%2C0.021%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold4 SAMTools SNP 74094 74094 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.075%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold4 SAMTools SNP 74163 74163 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold4 SAMTools SNP 74906 74906 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold4 SAMTools SNP 74945 74945 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold4 SAMTools SNP 74996 74996 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C21%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.042%2C0.26%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold4 SAMTools SNP 75629 75629 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold4 SAMTools SNP 77607 77607 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold4 SAMTools SNP 77613 77613 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold4 SAMTools SNP 77778 77778 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold4 SAMTools SNP 77785 77785 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold4 SAMTools SNP 78661 78661 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold4 SAMTools SNP 78724 78724 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold4 SAMTools SNP 78766 78766 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold4 SAMTools SNP 79297 79297 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold4 SAMTools SNP 79369 79369 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 79954 79954 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold4 SAMTools SNP 79964 79964 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold4 SAMTools SNP 86489 86489 15.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold4 SAMTools SNP 86810 86810 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold4 SAMTools SNP 87252 87252 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold4 SAMTools SNP 87984 87984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 91326 91326 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold4 SAMTools SNP 100974 100974 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold4 SAMTools SNP 101136 101136 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C67%2C0%3BMQ%3D49%3BFQ%3D-182%3BPV4%3D0.015%2C0.25%2C0.42%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold4 SAMTools SNP 101225 101225 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C24%2C0:45 scaffold4 SAMTools SNP 102086 102086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7107%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1681%2C2009%2C1280%2C1662%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 107095 107095 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1049%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C176%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0024%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C255%2C0:99 scaffold4 SAMTools SNP 107100 107100 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1043%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold4 SAMTools SNP 112729 112729 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.37%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold4 SAMTools SNP 124747 124747 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold4 SAMTools SNP 124771 124771 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold4 SAMTools SNP 125859 125859 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 126506 126506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold4 SAMTools SNP 126815 126815 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold4 SAMTools SNP 126903 126903 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C33%2C0:63 scaffold4 SAMTools SNP 127942 127942 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold4 SAMTools SNP 127954 127954 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold4 SAMTools SNP 128071 128071 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold4 SAMTools SNP 128095 128095 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold4 SAMTools SNP 128765 128765 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.035%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold4 SAMTools SNP 131164 131164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 131214 131214 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold4 SAMTools SNP 139211 139211 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold4 SAMTools SNP 140347 140347 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold4 SAMTools SNP 140369 140369 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold4 SAMTools SNP 141090 141090 26.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold4 SAMTools SNP 155270 155270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold4 SAMTools SNP 155568 155568 40.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold4 SAMTools SNP 155612 155612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 155631 155631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 155920 155920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 155969 155969 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 156165 156165 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 156209 156209 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold4 SAMTools SNP 156215 156215 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C147%2C120:51 scaffold4 SAMTools SNP 156387 156387 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.27%2C1%2C1%2C6.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold4 SAMTools SNP 156410 156410 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C28%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.12%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold4 SAMTools SNP 156757 156757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold4 SAMTools SNP 170112 170112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C201%2C3%2C185%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 217812 217812 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 265420 265420 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold4 SAMTools SNP 273465 273465 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 319671 319671 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold4 SAMTools SNP 327336 327336 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold4 SAMTools SNP 334084 334084 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.3%2C1.4e-10%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold4 SAMTools SNP 334992 334992 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C16%2C0:29 scaffold4 SAMTools SNP 339054 339054 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold4 SAMTools SNP 340641 340641 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold4 SAMTools SNP 340740 340740 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold4 SAMTools SNP 341082 341082 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold4 SAMTools SNP 359024 359024 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold4 SAMTools SNP 370897 370897 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 370925 370925 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 377042 377042 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C56%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C172%2C0:99 scaffold4 SAMTools SNP 378588 378588 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold4 SAMTools SNP 378618 378618 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold4 SAMTools SNP 378630 378630 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold4 SAMTools SNP 378645 378645 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold4 SAMTools SNP 378651 378651 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold4 SAMTools SNP 380600 380600 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 380784 380784 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.33%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold4 SAMTools SNP 381489 381489 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C44%2C6%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D2.8e-05%2C1%2C1%2C3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold4 SAMTools SNP 381522 381522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold4 SAMTools SNP 381565 381565 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold4 SAMTools SNP 381566 381566 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold4 SAMTools SNP 381882 381882 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold4 SAMTools SNP 381887 381887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold4 SAMTools SNP 381957 381957 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold4 SAMTools SNP 382334 382334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold4 SAMTools SNP 382367 382367 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 384234 384234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 384730 384730 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 385660 385660 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.041%2C5.1e-26%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold4 SAMTools SNP 385820 385820 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C57%2C0:99 scaffold4 SAMTools SNP 387303 387303 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold4 SAMTools SNP 387469 387469 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold4 SAMTools SNP 387834 387834 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold4 SAMTools SNP 388509 388509 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold4 SAMTools SNP 388654 388654 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.073%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C41:44 scaffold4 SAMTools SNP 392028 392028 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 392808 392808 68.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold4 SAMTools SNP 394326 394326 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold4 SAMTools SNP 394373 394373 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold4 SAMTools SNP 394567 394567 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold4 SAMTools SNP 397825 397825 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C66%2C0:99 scaffold4 SAMTools SNP 398354 398354 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C7.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C34:37 scaffold4 SAMTools SNP 398945 398945 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C192%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold4 SAMTools SNP 398956 398956 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C194%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C255%2C0:99 scaffold4 SAMTools SNP 399183 399183 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C7%2C29%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 399618 399618 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C47%2C29%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 400170 400170 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold4 SAMTools SNP 401047 401047 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C1%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 401083 401083 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.071%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C227:99 scaffold4 SAMTools SNP 401152 401152 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold4 SAMTools SNP 401301 401301 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.071%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold4 SAMTools SNP 402391 402391 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 402523 402523 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold4 SAMTools SNP 402613 402613 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C7%2C27%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.19%2C4.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold4 SAMTools SNP 402694 402694 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C59%2C16%2C13%3BMQ%3D50%3BFQ%3D22%3BPV4%3D8.7e-05%2C1.6e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold4 SAMTools SNP 402835 402835 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold4 SAMTools SNP 403082 403082 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C38%2C0%2C21%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.027%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold4 SAMTools SNP 403087 403087 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 403099 403099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C21%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 404308 404308 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold4 SAMTools SNP 405422 405422 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 409909 409909 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.098%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C221:99 scaffold4 SAMTools SNP 413235 413235 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C35:38 scaffold4 SAMTools SNP 423156 423156 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold4 SAMTools SNP 423392 423392 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 427579 427579 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 432994 432994 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold4 SAMTools SNP 434560 434560 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 434911 434911 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 441139 441139 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold4 SAMTools SNP 441172 441172 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold4 SAMTools SNP 441333 441333 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold4 SAMTools SNP 450926 450926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 450995 450995 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold4 SAMTools SNP 451682 451682 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.4%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C127:65 scaffold4 SAMTools SNP 451960 451960 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold4 SAMTools SNP 452238 452238 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 452273 452273 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold4 SAMTools SNP 452303 452303 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold4 SAMTools SNP 452778 452778 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold4 SAMTools SNP 452962 452962 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 452963 452963 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold4 SAMTools SNP 453024 453024 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold4 SAMTools SNP 453159 453159 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D31%3BFQ%3D14.2%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold4 SAMTools SNP 453191 453191 9.93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold4 SAMTools SNP 465630 465630 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C30%2C0:57 scaffold4 SAMTools SNP 465665 465665 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C65:68 scaffold4 SAMTools SNP 466913 466913 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C53:56 scaffold4 SAMTools SNP 466941 466941 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C5.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold4 SAMTools SNP 466952 466952 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.23%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold4 SAMTools SNP 466962 466962 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C5%3BMQ%3D49%3BFQ%3D89%3BPV4%3D0.22%2C1%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C241:99 scaffold4 SAMTools SNP 467199 467199 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C23%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold4 SAMTools SNP 467234 467234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold4 SAMTools SNP 467268 467268 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C109:31 scaffold4 SAMTools SNP 467270 467270 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D0.4%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C77:44 scaffold4 SAMTools SNP 467452 467452 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C197:31 scaffold4 SAMTools SNP 467454 467454 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C145:77 scaffold4 SAMTools SNP 467457 467457 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C168:28 scaffold4 SAMTools SNP 471921 471921 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 480340 480340 97.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C15%2C0:27 scaffold4 SAMTools SNP 481812 481812 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold4 SAMTools SNP 481853 481853 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold4 SAMTools SNP 482777 482777 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold4 SAMTools SNP 483048 483048 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold4 SAMTools SNP 483088 483088 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold4 SAMTools SNP 483127 483127 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold4 SAMTools SNP 483141 483141 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C37:40 scaffold4 SAMTools SNP 483334 483334 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.4%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C112:51 scaffold4 SAMTools SNP 527714 527714 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold4 SAMTools SNP 541587 541587 8.22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold4 SAMTools SNP 558055 558055 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold4 SAMTools SNP 568753 568753 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.023%2C8.6e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold4 SAMTools SNP 571546 571546 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C195:99 scaffold4 SAMTools SNP 571702 571702 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold4 SAMTools SNP 571727 571727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold4 SAMTools SNP 572059 572059 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.55%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold4 SAMTools SNP 572144 572144 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C75%2C0:99 scaffold4 SAMTools SNP 572232 572232 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C613%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold4 SAMTools SNP 578979 578979 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.25%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C76:60 scaffold4 SAMTools SNP 580010 580010 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C17%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.49%2C5.1e-16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C226:99 scaffold4 SAMTools SNP 580697 580697 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold4 SAMTools SNP 580835 580835 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C33%2C0:62 scaffold4 SAMTools SNP 582172 582172 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold4 SAMTools SNP 582296 582296 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C225:30 scaffold4 SAMTools SNP 582335 582335 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold4 SAMTools SNP 582574 582574 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold4 SAMTools SNP 582606 582606 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold4 SAMTools SNP 585480 585480 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold4 SAMTools SNP 588202 588202 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C13%2C60%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.01%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold4 SAMTools SNP 588229 588229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 588235 588235 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 588292 588292 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 590070 590070 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C74%2C17%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 599421 599421 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1.3e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C110:92 scaffold4 SAMTools SNP 599437 599437 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold4 SAMTools SNP 600073 600073 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold4 SAMTools SNP 600280 600280 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold4 SAMTools SNP 601456 601456 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold4 SAMTools SNP 601492 601492 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold4 SAMTools SNP 606915 606915 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold4 SAMTools SNP 607159 607159 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C12%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold4 SAMTools SNP 607290 607290 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold4 SAMTools SNP 607331 607331 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.039%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold4 SAMTools SNP 608311 608311 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C3%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0051%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold4 SAMTools SNP 613801 613801 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold4 SAMTools SNP 646225 646225 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold4 SAMTools SNP 646251 646251 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold4 SAMTools SNP 651902 651902 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold4 SAMTools SNP 667854 667854 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D33%3BFQ%3D42%3BPV4%3D0.52%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C76:72 scaffold40 SAMTools SNP 27850 27850 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40 SAMTools SNP 28425 28425 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D37%3BFQ%3D39%3BPV4%3D1%2C0.28%2C0.097%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C66:69 scaffold40 SAMTools SNP 28895 28895 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D42%3BFQ%3D52%3BPV4%3D0.29%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C109:82 scaffold40 SAMTools SNP 28923 28923 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold40 SAMTools SNP 40140 40140 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 40973 40973 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 41467 41467 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 41476 41476 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 60045 60045 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40 SAMTools SNP 62923 62923 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C33%2C0:63 scaffold40 SAMTools SNP 62931 62931 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.52%2C1.8e-10%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C218:41 scaffold40 SAMTools SNP 63261 63261 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C6%3BMQ%3D49%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold40 SAMTools SNP 63309 63309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40 SAMTools SNP 63336 63336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40 SAMTools SNP 128624 128624 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0.024%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold40 SAMTools SNP 129266 129266 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40 SAMTools SNP 129284 129284 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 133811 133811 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 148600 148600 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40 SAMTools SNP 149246 149246 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40 SAMTools SNP 149354 149354 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40 SAMTools SNP 149399 149399 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40 SAMTools SNP 149813 149813 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40 SAMTools SNP 150509 150509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40 SAMTools SNP 150539 150539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40 SAMTools SNP 150584 150584 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D21.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C49:52 scaffold40 SAMTools SNP 150585 150585 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C104:36 scaffold40 SAMTools SNP 151234 151234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40 SAMTools SNP 151263 151263 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold40 SAMTools SNP 151291 151291 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold40 SAMTools SNP 151320 151320 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40 SAMTools SNP 151702 151702 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold40 SAMTools SNP 151846 151846 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold40 SAMTools SNP 152878 152878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40 SAMTools SNP 152901 152901 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40 SAMTools SNP 152914 152914 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold40 SAMTools SNP 152964 152964 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.55%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold40 SAMTools SNP 154938 154938 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold40 SAMTools SNP 155016 155016 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 155084 155084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40 SAMTools SNP 155949 155949 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.54%2C0.29%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold40 SAMTools SNP 156296 156296 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C227:99 scaffold40 SAMTools SNP 274537 274537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 274890 274890 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.31%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C243:99 scaffold40 SAMTools SNP 274894 274894 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C214:99 scaffold40 SAMTools SNP 274915 274915 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.036%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold40 SAMTools SNP 274922 274922 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.089%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold40 SAMTools SNP 274930 274930 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold40 SAMTools SNP 275583 275583 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40 SAMTools SNP 276067 276067 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40 SAMTools SNP 276088 276088 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.9%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C51:50 scaffold40 SAMTools SNP 276094 276094 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40 SAMTools SNP 276111 276111 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C27%2C0:50 scaffold40 SAMTools SNP 307244 307244 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold40 SAMTools SNP 321467 321467 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold40 SAMTools SNP 328315 328315 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C196:60 scaffold40 SAMTools SNP 331149 331149 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C7.3e-29%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold40 SAMTools SNP 331220 331220 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40 SAMTools SNP 340104 340104 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40 SAMTools SNP 404521 404521 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 19771 19771 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 27505 27505 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold400 SAMTools SNP 29302 29302 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold400 SAMTools SNP 32889 32889 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold400 SAMTools SNP 35164 35164 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.54%2C0.3%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold400 SAMTools SNP 36313 36313 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold400 SAMTools SNP 36828 36828 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold400 SAMTools SNP 37508 37508 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 37998 37998 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold400 SAMTools SNP 38037 38037 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 38049 38049 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 39354 39354 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold400 SAMTools SNP 39907 39907 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold400 SAMTools SNP 43149 43149 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold400 SAMTools SNP 43190 43190 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold400 SAMTools SNP 44717 44717 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold400 SAMTools SNP 44789 44789 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 49997 49997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C18%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 50027 50027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold400 SAMTools SNP 54964 54964 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold400 SAMTools SNP 55444 55444 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold400 SAMTools SNP 55865 55865 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold400 SAMTools SNP 55871 55871 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.53%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold400 SAMTools SNP 55874 55874 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.27%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold400 SAMTools SNP 55894 55894 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 56340 56340 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 58520 58520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold400 SAMTools SNP 58589 58589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold400 SAMTools SNP 59250 59250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold400 SAMTools SNP 59265 59265 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold400 SAMTools SNP 59271 59271 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold400 SAMTools SNP 59568 59568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold400 SAMTools SNP 59571 59571 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold400 SAMTools SNP 59625 59625 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold400 SAMTools SNP 60513 60513 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 63426 63426 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold400 SAMTools SNP 64293 64293 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold400 SAMTools SNP 65048 65048 69.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold400 SAMTools SNP 72011 72011 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.3e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C99:99 scaffold400 SAMTools SNP 73367 73367 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C12%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 74555 74555 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 75217 75217 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold400 SAMTools SNP 75259 75259 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold400 SAMTools SNP 75508 75508 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C4%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.17%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold400 SAMTools SNP 76273 76273 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C8%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0029%2C4.1e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold400 SAMTools SNP 83176 83176 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.038%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C212:49 scaffold400 SAMTools SNP 83203 83203 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.11%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C186:67 scaffold400 SAMTools SNP 83212 83212 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.0077%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold400 SAMTools SNP 83243 83243 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.047%2C0.024%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold400 SAMTools SNP 83418 83418 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 83721 83721 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold400 SAMTools SNP 83795 83795 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold400 SAMTools SNP 83943 83943 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C229:99 scaffold400 SAMTools SNP 85043 85043 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C255%2C0:99 scaffold400 SAMTools SNP 85100 85100 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold400 SAMTools SNP 85110 85110 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C51%2C2%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold400 SAMTools SNP 85633 85633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold400 SAMTools SNP 86929 86929 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C53%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.49%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold400 SAMTools SNP 92769 92769 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold400 SAMTools SNP 92879 92879 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold400 SAMTools SNP 96164 96164 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 143744 143744 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold400 SAMTools SNP 147982 147982 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold400 SAMTools SNP 147987 147987 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 148143 148143 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 148334 148334 23.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold400 SAMTools SNP 148456 148456 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold400 SAMTools SNP 149405 149405 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C0%3BMQ%3D48%3BFQ%3D-58%3BPV4%3D0.071%2C3.5e-14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C31%2C0:59 scaffold400 SAMTools SNP 149673 149673 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 149689 149689 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 150338 150338 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold400 SAMTools SNP 150428 150428 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold400 SAMTools SNP 150448 150448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C16%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold400 SAMTools SNP 150488 150488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold400 SAMTools SNP 159863 159863 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.4%2C1.6e-07%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold400 SAMTools SNP 161598 161598 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold400 SAMTools SNP 161641 161641 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold400 SAMTools SNP 162339 162339 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold400 SAMTools SNP 162903 162903 15.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C37%2C28%2C44%2C0%2C41:14 scaffold400 SAMTools SNP 163380 163380 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C51%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C169%2C0:99 scaffold400 SAMTools SNP 169407 169407 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold400 SAMTools SNP 169456 169456 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.00063%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold400 SAMTools SNP 169629 169629 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold400 SAMTools SNP 170598 170598 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold400 SAMTools SNP 172888 172888 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold400 SAMTools SNP 172920 172920 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold400 SAMTools SNP 179126 179126 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold400 SAMTools SNP 181020 181020 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D3.3e-07%2C3.3e-14%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold400 SAMTools SNP 192465 192465 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold400 SAMTools SNP 193440 193440 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 195708 195708 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold400 SAMTools SNP 201804 201804 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 202433 202433 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold400 SAMTools SNP 202609 202609 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold400 SAMTools SNP 203555 203555 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold400 SAMTools SNP 204139 204139 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold400 SAMTools SNP 204306 204306 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 204885 204885 52.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold400 SAMTools SNP 205028 205028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold400 SAMTools SNP 205424 205424 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold400 SAMTools SNP 209302 209302 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 210797 210797 19.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C5%2C0:9 scaffold400 SAMTools SNP 233512 233512 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 233697 233697 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold400 SAMTools SNP 252205 252205 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.19%2C1.9e-14%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C28%2C0:53 scaffold400 SAMTools SNP 252806 252806 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C20%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.016%2C1.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold400 SAMTools SNP 253016 253016 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold400 SAMTools SNP 253186 253186 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.64%2C3.2e-11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold400 SAMTools SNP 253301 253301 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C11%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1.2e-28%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold400 SAMTools SNP 254353 254353 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C195:28 scaffold400 SAMTools SNP 264560 264560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold400 SAMTools SNP 264583 264583 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold400 SAMTools SNP 264652 264652 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 1218 1218 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold40002 SAMTools SNP 1233 1233 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C54%2C0:99 scaffold40002 SAMTools SNP 2417 2417 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40002 SAMTools SNP 2592 2592 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40002 SAMTools SNP 2857 2857 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C3%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C226%2C0:99 scaffold40002 SAMTools SNP 3277 3277 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold40002 SAMTools SNP 3403 3403 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold40002 SAMTools SNP 3531 3531 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C197:47 scaffold40002 SAMTools SNP 8668 8668 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 8906 8906 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold40002 SAMTools SNP 8917 8917 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40002 SAMTools SNP 12034 12034 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C24%2C0:45 scaffold40002 SAMTools SNP 12050 12050 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C216:31 scaffold40002 SAMTools SNP 12052 12052 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold40002 SAMTools SNP 13220 13220 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40002 SAMTools SNP 13510 13510 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold40002 SAMTools SNP 36543 36543 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D90.5%3BPV4%3D1%2C2.5e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C121:99 scaffold40002 SAMTools SNP 36579 36579 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C163:47 scaffold40002 SAMTools SNP 47617 47617 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 47880 47880 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40002 SAMTools SNP 48990 48990 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.43%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold40002 SAMTools SNP 51917 51917 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40002 SAMTools SNP 51918 51918 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 55575 55575 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 56040 56040 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40002 SAMTools SNP 58799 58799 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold40002 SAMTools SNP 58852 58852 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C109:28 scaffold40002 SAMTools SNP 59080 59080 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 59520 59520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 61048 61048 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold40002 SAMTools SNP 61102 61102 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.3%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold40002 SAMTools SNP 61138 61138 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C150:65 scaffold40002 SAMTools SNP 61270 61270 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40002 SAMTools SNP 62152 62152 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40002 SAMTools SNP 62800 62800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 65628 65628 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.1e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold40002 SAMTools SNP 65739 65739 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C2%2C53%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.5%2C6.3e-63%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold40002 SAMTools SNP 66150 66150 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C7%2C17%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.47%2C4.3e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold40002 SAMTools SNP 72831 72831 25.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold40002 SAMTools SNP 72834 72834 13.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold40002 SAMTools SNP 72843 72843 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40002 SAMTools SNP 72856 72856 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40002 SAMTools SNP 73232 73232 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40002 SAMTools SNP 73436 73436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40002 SAMTools SNP 73688 73688 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40002 SAMTools SNP 74172 74172 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.8e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40002 SAMTools SNP 74398 74398 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold40002 SAMTools SNP 75019 75019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40002 SAMTools SNP 75262 75262 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40002 SAMTools SNP 75289 75289 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold40002 SAMTools SNP 75504 75504 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 75517 75517 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40002 SAMTools SNP 76585 76585 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.71%2C3.5e-14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold40002 SAMTools SNP 76777 76777 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C58%2C2%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.045%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40002 SAMTools SNP 77886 77886 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C0%2C34%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold40002 SAMTools SNP 78213 78213 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C228:99 scaffold40002 SAMTools SNP 78219 78219 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C216:99 scaffold40002 SAMTools SNP 82026 82026 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.033%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40002 SAMTools SNP 82095 82095 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40002 SAMTools SNP 82338 82338 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40002 SAMTools SNP 82339 82339 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 403 403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 1477 1477 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 12852 12852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 31325 31325 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40006 SAMTools SNP 32265 32265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40006 SAMTools SNP 33488 33488 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 33740 33740 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C60%2C0:99 scaffold40006 SAMTools SNP 34218 34218 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold40006 SAMTools SNP 34645 34645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40006 SAMTools SNP 36894 36894 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40006 SAMTools SNP 36948 36948 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold40006 SAMTools SNP 47712 47712 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40006 SAMTools SNP 48590 48590 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.029%2C4.8e-07%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C134:84 scaffold40006 SAMTools SNP 50907 50907 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.022%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C88:62 scaffold40006 SAMTools SNP 51518 51518 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold40006 SAMTools SNP 71483 71483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D679%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C43%3BMQ%3D50%3BFQ%3D-235%3BPV4%3D0.49%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold40006 SAMTools SNP 79491 79491 35.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold40006 SAMTools SNP 80239 80239 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C36%2C0:69 scaffold40006 SAMTools SNP 80413 80413 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C112%2C0%2C25%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.13%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold40006 SAMTools SNP 80424 80424 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C112%2C0%2C25%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C0.35%2C1%2C5.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold40006 SAMTools SNP 80677 80677 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C10%2C112%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold40006 SAMTools SNP 81960 81960 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold40016 SAMTools SNP 1014 1014 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40016 SAMTools SNP 1038 1038 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold40016 SAMTools SNP 2514 2514 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold40016 SAMTools SNP 5130 5130 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40016 SAMTools SNP 7857 7857 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40016 SAMTools SNP 7906 7906 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40016 SAMTools SNP 24738 24738 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold40016 SAMTools SNP 24955 24955 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C0.03%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold40016 SAMTools SNP 26498 26498 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40016 SAMTools SNP 27968 27968 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40016 SAMTools SNP 28002 28002 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.055%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C198:99 scaffold40016 SAMTools SNP 28121 28121 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.065%2C0.23%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C232:99 scaffold40016 SAMTools SNP 28482 28482 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C10%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.11%2C0.21%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold40016 SAMTools SNP 29074 29074 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.59%2C0.052%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C237:99 scaffold40016 SAMTools SNP 29094 29094 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40016 SAMTools SNP 29146 29146 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold40016 SAMTools SNP 30503 30503 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40016 SAMTools SNP 30526 30526 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold40016 SAMTools SNP 30548 30548 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40016 SAMTools SNP 31329 31329 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold40016 SAMTools SNP 31355 31355 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40016 SAMTools SNP 32689 32689 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40016 SAMTools SNP 34061 34061 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold40016 SAMTools SNP 67919 67919 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold40016 SAMTools SNP 67970 67970 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold40016 SAMTools SNP 68528 68528 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40026 SAMTools SNP 9456 9456 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold40026 SAMTools SNP 13098 13098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 13140 13140 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 14097 14097 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40026 SAMTools SNP 14580 14580 103 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C34%2C25%2C132%2C0%2C129:16 scaffold40026 SAMTools SNP 14982 14982 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 16364 16364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C241%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40026 SAMTools SNP 17686 17686 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D754%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D385%2C102%2C168%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.027%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40026 SAMTools SNP 17692 17692 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D792%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C113%2C380%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-14%2C0.44%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40026 SAMTools SNP 18044 18044 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1654%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D713%2C446%2C127%2C96%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.2%2C0.014%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold40026 SAMTools SNP 18335 18335 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1202%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C845%2C1%2C353%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold40026 SAMTools SNP 18344 18344 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1141%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C1125%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40026 SAMTools SNP 25184 25184 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40026 SAMTools SNP 26086 26086 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 26101 26101 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40026 SAMTools SNP 28730 28730 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 28747 28747 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40026 SAMTools SNP 53474 53474 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C79:33 scaffold40026 SAMTools SNP 53752 53752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40026 SAMTools SNP 54889 54889 103 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C51%2C0:99 scaffold40026 SAMTools SNP 55842 55842 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40026 SAMTools SNP 55862 55862 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold40026 SAMTools SNP 78290 78290 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C75%2C0:99 scaffold40026 SAMTools SNP 78816 78816 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C15%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40026 SAMTools SNP 79851 79851 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.1e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40026 SAMTools SNP 80685 80685 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C17%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C2e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40030 SAMTools SNP 2277 2277 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.00097%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C163:92 scaffold40030 SAMTools SNP 2719 2719 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold40030 SAMTools SNP 3922 3922 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40030 SAMTools SNP 4984 4984 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold40030 SAMTools SNP 5292 5292 32.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold40030 SAMTools SNP 5293 5293 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold40030 SAMTools SNP 5305 5305 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C140:99 scaffold40030 SAMTools SNP 5848 5848 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold40030 SAMTools SNP 6136 6136 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold40030 SAMTools SNP 6466 6466 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold40030 SAMTools SNP 6627 6627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40030 SAMTools SNP 7366 7366 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.046%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40030 SAMTools SNP 7548 7548 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40030 SAMTools SNP 7817 7817 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40030 SAMTools SNP 8083 8083 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40030 SAMTools SNP 8089 8089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40030 SAMTools SNP 10902 10902 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C54%2C0:99 scaffold40030 SAMTools SNP 11226 11226 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C120%2C0:99 scaffold40030 SAMTools SNP 11792 11792 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.28%2C6.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C209:74 scaffold40030 SAMTools SNP 11906 11906 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold40030 SAMTools SNP 59682 59682 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40030 SAMTools SNP 64238 64238 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40030 SAMTools SNP 65143 65143 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold40030 SAMTools SNP 76199 76199 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40038 SAMTools SNP 699 699 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0028%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C180:46 scaffold40038 SAMTools SNP 705 705 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C8.2e-12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C114:96 scaffold40038 SAMTools SNP 4793 4793 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C48%2C0:93 scaffold40038 SAMTools SNP 5701 5701 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold40038 SAMTools SNP 5707 5707 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold40038 SAMTools SNP 7585 7585 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40038 SAMTools SNP 8161 8161 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40038 SAMTools SNP 8278 8278 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40038 SAMTools SNP 10893 10893 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold40038 SAMTools SNP 11043 11043 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-10%2C7.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 12265 12265 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold40038 SAMTools SNP 13324 13324 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.66%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold40038 SAMTools SNP 13453 13453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 13849 13849 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C13%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0029%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 14037 14037 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 14078 14078 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40038 SAMTools SNP 14160 14160 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40038 SAMTools SNP 14187 14187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40038 SAMTools SNP 15538 15538 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C38:41 scaffold40038 SAMTools SNP 16102 16102 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40038 SAMTools SNP 16105 16105 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40038 SAMTools SNP 16372 16372 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold40038 SAMTools SNP 18730 18730 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.092%2C8.7e-23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold40038 SAMTools SNP 18757 18757 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C11%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.14%2C3.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold40038 SAMTools SNP 19819 19819 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C132%2C0:99 scaffold40038 SAMTools SNP 19951 19951 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0015%2C4.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold40038 SAMTools SNP 20257 20257 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C75:78 scaffold40038 SAMTools SNP 20258 20258 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D56.8%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C85:87 scaffold40038 SAMTools SNP 20471 20471 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40038 SAMTools SNP 20529 20529 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40038 SAMTools SNP 20716 20716 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40038 SAMTools SNP 21093 21093 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold40038 SAMTools SNP 21113 21113 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 21492 21492 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold40038 SAMTools SNP 23340 23340 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C150%2C108:81 scaffold40038 SAMTools SNP 23345 23345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40038 SAMTools SNP 24605 24605 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40038 SAMTools SNP 25009 25009 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold40038 SAMTools SNP 25055 25055 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C27%2C0:51 scaffold40038 SAMTools SNP 25118 25118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40038 SAMTools SNP 25226 25226 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0043%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C157:42 scaffold40038 SAMTools SNP 25543 25543 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold40038 SAMTools SNP 25564 25564 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40038 SAMTools SNP 27173 27173 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold40038 SAMTools SNP 27312 27312 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold40038 SAMTools SNP 28119 28119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40038 SAMTools SNP 29222 29222 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40038 SAMTools SNP 29841 29841 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D36.9%3BPV4%3D0.17%2C5.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C66:67 scaffold40038 SAMTools SNP 29901 29901 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C60:63 scaffold40038 SAMTools SNP 31888 31888 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40038 SAMTools SNP 31915 31915 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40038 SAMTools SNP 34672 34672 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold40038 SAMTools SNP 35007 35007 23.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold40038 SAMTools SNP 35638 35638 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40038 SAMTools SNP 35806 35806 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40038 SAMTools SNP 35821 35821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40038 SAMTools SNP 38049 38049 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C74:77 scaffold40038 SAMTools SNP 39980 39980 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40038 SAMTools SNP 40471 40471 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold40038 SAMTools SNP 55944 55944 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C124:33 scaffold40038 SAMTools SNP 56366 56366 34.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold40038 SAMTools SNP 60532 60532 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold40038 SAMTools SNP 69280 69280 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40038 SAMTools SNP 69322 69322 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40038 SAMTools SNP 69327 69327 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40038 SAMTools SNP 75002 75002 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold40038 SAMTools SNP 80825 80825 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40038 SAMTools SNP 80858 80858 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40038 SAMTools SNP 81036 81036 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40050 SAMTools SNP 5730 5730 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold40050 SAMTools SNP 5833 5833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40050 SAMTools SNP 18131 18131 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40050 SAMTools SNP 25957 25957 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40050 SAMTools SNP 45636 45636 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40050 SAMTools SNP 45637 45637 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40050 SAMTools SNP 46845 46845 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40050 SAMTools SNP 46850 46850 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40050 SAMTools SNP 47528 47528 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40050 SAMTools SNP 48106 48106 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40050 SAMTools SNP 48441 48441 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40050 SAMTools SNP 48471 48471 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold40050 SAMTools SNP 49154 49154 14.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold40050 SAMTools SNP 53767 53767 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40050 SAMTools SNP 56965 56965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40050 SAMTools SNP 57000 57000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40050 SAMTools SNP 60643 60643 24.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold40050 SAMTools SNP 61526 61526 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40050 SAMTools SNP 61538 61538 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40054 SAMTools SNP 2200 2200 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 3438 3438 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 5575 5575 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold40054 SAMTools SNP 6218 6218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40054 SAMTools SNP 6875 6875 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40054 SAMTools SNP 8443 8443 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40054 SAMTools SNP 8729 8729 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40054 SAMTools SNP 10161 10161 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40054 SAMTools SNP 13010 13010 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40054 SAMTools SNP 13082 13082 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40054 SAMTools SNP 13626 13626 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40054 SAMTools SNP 13714 13714 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C21:24 scaffold40054 SAMTools SNP 15581 15581 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 18162 18162 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 18865 18865 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40054 SAMTools SNP 18894 18894 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40054 SAMTools SNP 21581 21581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 23111 23111 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 23271 23271 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40054 SAMTools SNP 23337 23337 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C200:41 scaffold40054 SAMTools SNP 23448 23448 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C0.065%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C110:99 scaffold40054 SAMTools SNP 23472 23472 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0128%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40054 SAMTools SNP 51388 51388 12.2 . . REF=N;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C9%2C41%2C0%2C38:14 scaffold40054 SAMTools SNP 51578 51578 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C51%2C0:72 scaffold40068 SAMTools SNP 654 654 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40068 SAMTools SNP 759 759 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40068 SAMTools SNP 808 808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40068 SAMTools SNP 9334 9334 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40068 SAMTools SNP 72361 72361 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40068 SAMTools SNP 72864 72864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40068 SAMTools SNP 72896 72896 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold40068 SAMTools SNP 72908 72908 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold40068 SAMTools SNP 73204 73204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C21%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.027%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold40068 SAMTools SNP 73620 73620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.31%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold40068 SAMTools SNP 73658 73658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold40068 SAMTools SNP 73973 73973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40068 SAMTools SNP 73983 73983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40068 SAMTools SNP 74213 74213 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40068 SAMTools SNP 74484 74484 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40068 SAMTools SNP 76825 76825 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40068 SAMTools SNP 76846 76846 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C3%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.36%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40068 SAMTools SNP 78635 78635 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C55%2C0%2C36%3BMQ%3D44%3BFQ%3D194%3BPV4%3D0.048%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold40068 SAMTools SNP 78798 78798 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C6%3BMQ%3D45%3BFQ%3D80%3BPV4%3D0.12%2C1%2C0.14%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold40068 SAMTools SNP 78825 78825 51 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C49%2C40%2C87%2C0%2C78:16 scaffold40068 SAMTools SNP 78855 78855 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C27%2C0:51 scaffold40068 SAMTools SNP 79159 79159 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D46%3BFQ%3D17.1%3BPV4%3D0.46%2C0.0025%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold40068 SAMTools SNP 79184 79184 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C34:37 scaffold40068 SAMTools SNP 79221 79221 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D42%3BFQ%3D4.13%3BPV4%3D1%2C0.092%2C0.29%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C29:32 scaffold40068 SAMTools SNP 79640 79640 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold40072 SAMTools SNP 656 656 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40072 SAMTools SNP 760 760 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C25%2C0%3BMQ%3D48%3BFQ%3D194%3BPV4%3D0.074%2C0.012%2C0.32%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold40072 SAMTools SNP 6860 6860 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40072 SAMTools SNP 6920 6920 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold40072 SAMTools SNP 8442 8442 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold40072 SAMTools SNP 8520 8520 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40072 SAMTools SNP 12277 12277 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40072 SAMTools SNP 12331 12331 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40072 SAMTools SNP 12348 12348 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.13%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold40072 SAMTools SNP 15746 15746 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.25%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold40072 SAMTools SNP 29738 29738 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold40072 SAMTools SNP 29761 29761 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold40072 SAMTools SNP 29854 29854 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C11%2C61%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C8.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 30383 30383 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40072 SAMTools SNP 30449 30449 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.026%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold40072 SAMTools SNP 31279 31279 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40072 SAMTools SNP 31631 31631 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1.2e-17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C193:99 scaffold40072 SAMTools SNP 31958 31958 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold40072 SAMTools SNP 32065 32065 24.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold40072 SAMTools SNP 32837 32837 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C1%3BMQ%3D48%3BFQ%3D52%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C79:82 scaffold40072 SAMTools SNP 33219 33219 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40072 SAMTools SNP 33240 33240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C4%3BMQ%3D48%3BFQ%3D121%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold40072 SAMTools SNP 33408 33408 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C210:99 scaffold40072 SAMTools SNP 34837 34837 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.47%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold40072 SAMTools SNP 37010 37010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40072 SAMTools SNP 38089 38089 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold40072 SAMTools SNP 38125 38125 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold40072 SAMTools SNP 38272 38272 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold40072 SAMTools SNP 38371 38371 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold40072 SAMTools SNP 38389 38389 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.3%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold40072 SAMTools SNP 40033 40033 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 40472 40472 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.013%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold40072 SAMTools SNP 40842 40842 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold40072 SAMTools SNP 41370 41370 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold40072 SAMTools SNP 41415 41415 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold40072 SAMTools SNP 43879 43879 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40072 SAMTools SNP 43933 43933 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold40072 SAMTools SNP 44826 44826 164 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C60:63 scaffold40072 SAMTools SNP 48092 48092 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40072 SAMTools SNP 49383 49383 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40072 SAMTools SNP 49394 49394 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40072 SAMTools SNP 59814 59814 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C12%2C55%3BMQ%3D50%3BFQ%3D-59%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C32%2C0:61 scaffold40072 SAMTools SNP 59835 59835 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40072 SAMTools SNP 60233 60233 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C107%2C0%2C19%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold40072 SAMTools SNP 62242 62242 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40072 SAMTools SNP 62254 62254 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold40072 SAMTools SNP 62954 62954 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold40072 SAMTools SNP 62996 62996 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C46%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold40072 SAMTools SNP 64309 64309 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C1%2C104%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-07%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 64324 64324 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C39%2C71%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D4.2e-07%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold40072 SAMTools SNP 64521 64521 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C97%2C9%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C7.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 64536 64536 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C73%2C38%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-07%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 64584 64584 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C102%2C8%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 64738 64738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40072 SAMTools SNP 64768 64768 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C33%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 64986 64986 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C47%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold40072 SAMTools SNP 65007 65007 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C32%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 65592 65592 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C26%2C29%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 65698 65698 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C63%2C24%2C35%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.1e-89%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold40072 SAMTools SNP 65712 65712 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C60%2C2%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00072%2C0.019%2C1%2C1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 65855 65855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C91%2C0%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C0.028%2C1%2C4.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40072 SAMTools SNP 65934 65934 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C30%2C0%2C12%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0002%2C1%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40072 SAMTools SNP 75700 75700 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40076 SAMTools SNP 609 609 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold40076 SAMTools SNP 1281 1281 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40076 SAMTools SNP 13445 13445 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40076 SAMTools SNP 13460 13460 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold40076 SAMTools SNP 13478 13478 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40076 SAMTools SNP 14384 14384 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40076 SAMTools SNP 14421 14421 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40076 SAMTools SNP 20801 20801 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40076 SAMTools SNP 50058 50058 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold40076 SAMTools SNP 50149 50149 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C202:87 scaffold40076 SAMTools SNP 55193 55193 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C253:66 scaffold40076 SAMTools SNP 55244 55244 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40076 SAMTools SNP 62483 62483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40080 SAMTools SNP 4564 4564 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40080 SAMTools SNP 7807 7807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40080 SAMTools SNP 7819 7819 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40080 SAMTools SNP 23516 23516 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40080 SAMTools SNP 23546 23546 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C6.3e-05%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold40080 SAMTools SNP 25743 25743 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40080 SAMTools SNP 53985 53985 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold40080 SAMTools SNP 54486 54486 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40080 SAMTools SNP 54512 54512 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0244%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40084 SAMTools SNP 3030 3030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold40084 SAMTools SNP 3488 3488 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C5%2C90%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold40084 SAMTools SNP 4067 4067 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C67%2C0%2C19%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40084 SAMTools SNP 4110 4110 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C57%2C0%2C13%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.2%2C1%2C1%2C6.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40084 SAMTools SNP 4125 4125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C311%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40084 SAMTools SNP 4809 4809 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C193%2C27%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-08%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 4848 4848 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C27%2C73%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 5038 5038 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C21%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 5173 5173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40084 SAMTools SNP 5594 5594 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C398%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40084 SAMTools SNP 7137 7137 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C27%2C0:51 scaffold40084 SAMTools SNP 8043 8043 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40084 SAMTools SNP 8800 8800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40084 SAMTools SNP 9308 9308 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40084 SAMTools SNP 9315 9315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40084 SAMTools SNP 11885 11885 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40084 SAMTools SNP 11906 11906 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40084 SAMTools SNP 12292 12292 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40084 SAMTools SNP 12761 12761 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold40084 SAMTools SNP 12794 12794 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.003%2C3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C127:48 scaffold40084 SAMTools SNP 12869 12869 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40084 SAMTools SNP 12881 12881 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40084 SAMTools SNP 13629 13629 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold40084 SAMTools SNP 13659 13659 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold40084 SAMTools SNP 13710 13710 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40084 SAMTools SNP 13719 13719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40084 SAMTools SNP 14409 14409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 14621 14621 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40084 SAMTools SNP 17744 17744 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40084 SAMTools SNP 18425 18425 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 22784 22784 55.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold40084 SAMTools SNP 25813 25813 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40084 SAMTools SNP 33011 33011 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 33023 33023 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 38044 38044 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C237:69 scaffold40084 SAMTools SNP 38059 38059 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold40084 SAMTools SNP 38140 38140 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C78%2C0:99 scaffold40084 SAMTools SNP 38148 38148 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40084 SAMTools SNP 38230 38230 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C3%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold40084 SAMTools SNP 40025 40025 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40084 SAMTools SNP 42735 42735 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold40084 SAMTools SNP 42957 42957 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40084 SAMTools SNP 42987 42987 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 44403 44403 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 44411 44411 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 44568 44568 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C232:99 scaffold40084 SAMTools SNP 44577 44577 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold40084 SAMTools SNP 44791 44791 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40084 SAMTools SNP 44959 44959 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40084 SAMTools SNP 45326 45326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40084 SAMTools SNP 45574 45574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C17%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold40084 SAMTools SNP 45679 45679 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 45978 45978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40084 SAMTools SNP 46176 46176 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.13%2C0.031%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C145:99 scaffold40084 SAMTools SNP 46209 46209 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C181:99 scaffold40084 SAMTools SNP 46239 46239 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold40084 SAMTools SNP 46412 46412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold40084 SAMTools SNP 46481 46481 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40084 SAMTools SNP 46811 46811 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40084 SAMTools SNP 46822 46822 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.059%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold40084 SAMTools SNP 46904 46904 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C110:62 scaffold40084 SAMTools SNP 46943 46943 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40084 SAMTools SNP 47140 47140 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40084 SAMTools SNP 47426 47426 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 47457 47457 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 47828 47828 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40084 SAMTools SNP 48209 48209 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D93.7%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C121:99 scaffold40084 SAMTools SNP 48278 48278 94.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold40084 SAMTools SNP 48296 48296 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40084 SAMTools SNP 48445 48445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 48515 48515 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D3.6e-06%2C2.2e-13%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold40084 SAMTools SNP 49111 49111 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40084 SAMTools SNP 49117 49117 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 50973 50973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40084 SAMTools SNP 51479 51479 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.008%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40084 SAMTools SNP 51937 51937 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40084 SAMTools SNP 53025 53025 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.17%2C5.6e-06%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold40084 SAMTools SNP 53084 53084 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.54%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold40084 SAMTools SNP 53471 53471 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C26%2C5%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold40084 SAMTools SNP 54561 54561 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 55059 55059 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.039%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold40084 SAMTools SNP 55317 55317 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D57.8%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C98:88 scaffold40084 SAMTools SNP 55773 55773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40084 SAMTools SNP 55785 55785 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40084 SAMTools SNP 55863 55863 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold40084 SAMTools SNP 55920 55920 47.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold40084 SAMTools SNP 55986 55986 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold40084 SAMTools SNP 56285 56285 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40084 SAMTools SNP 56334 56334 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold40084 SAMTools SNP 56664 56664 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.077%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C162:39 scaffold40084 SAMTools SNP 56673 56673 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C0.00065%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40084 SAMTools SNP 57022 57022 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold40084 SAMTools SNP 57061 57061 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40084 SAMTools SNP 57640 57640 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold40084 SAMTools SNP 58496 58496 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold40084 SAMTools SNP 58559 58559 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold40084 SAMTools SNP 58733 58733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40084 SAMTools SNP 58778 58778 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold40084 SAMTools SNP 58802 58802 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40084 SAMTools SNP 59145 59145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40084 SAMTools SNP 59229 59229 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40084 SAMTools SNP 59892 59892 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40084 SAMTools SNP 59913 59913 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40084 SAMTools SNP 59922 59922 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 60024 60024 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 60042 60042 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 60208 60208 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 60211 60211 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40084 SAMTools SNP 61135 61135 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40084 SAMTools SNP 61162 61162 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold40084 SAMTools SNP 61279 61279 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40084 SAMTools SNP 61720 61720 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40084 SAMTools SNP 61805 61805 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C66%2C0:99 scaffold40084 SAMTools SNP 61906 61906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40084 SAMTools SNP 62190 62190 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold40084 SAMTools SNP 62237 62237 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.064%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40084 SAMTools SNP 62597 62597 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40084 SAMTools SNP 64129 64129 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold40084 SAMTools SNP 65058 65058 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40084 SAMTools SNP 65127 65127 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40084 SAMTools SNP 65305 65305 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40084 SAMTools SNP 67644 67644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40084 SAMTools SNP 69056 69056 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40084 SAMTools SNP 69659 69659 196 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C248%2C0%2C245:39 scaffold40084 SAMTools SNP 69851 69851 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold40084 SAMTools SNP 70031 70031 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold40084 SAMTools SNP 70082 70082 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold40084 SAMTools SNP 70395 70395 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C239:99 scaffold40084 SAMTools SNP 70400 70400 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold40084 SAMTools SNP 70403 70403 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C0.16%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40084 SAMTools SNP 71052 71052 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.25%2C0.36%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C237:99 scaffold40084 SAMTools SNP 71061 71061 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold40084 SAMTools SNP 71187 71187 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold40084 SAMTools SNP 71555 71555 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40084 SAMTools SNP 71636 71636 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.63%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C204:75 scaffold40084 SAMTools SNP 71705 71705 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.42%2C0.052%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C174:99 scaffold40084 SAMTools SNP 71714 71714 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.43%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C194:99 scaffold40084 SAMTools SNP 71919 71919 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40084 SAMTools SNP 72816 72816 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40084 SAMTools SNP 72987 72987 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C21%2C0:39 scaffold40084 SAMTools SNP 73050 73050 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40084 SAMTools SNP 73462 73462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40084 SAMTools SNP 75751 75751 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold40084 SAMTools SNP 76355 76355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40084 SAMTools SNP 76457 76457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 77006 77006 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 77177 77177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40084 SAMTools SNP 77198 77198 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C25%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 77463 77463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C2%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.16%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 77792 77792 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.46%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C236:99 scaffold40084 SAMTools SNP 77804 77804 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40084 SAMTools SNP 77831 77831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40084 SAMTools SNP 77870 77870 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40084 SAMTools SNP 78278 78278 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold40084 SAMTools SNP 78279 78279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold40084 SAMTools SNP 80637 80637 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40084 SAMTools SNP 82758 82758 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C78%2C0:99 scaffold40088 SAMTools SNP 44287 44287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold40088 SAMTools SNP 51396 51396 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C46%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold40088 SAMTools SNP 51680 51680 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C44%2C10%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold40088 SAMTools SNP 52053 52053 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40088 SAMTools SNP 54698 54698 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40088 SAMTools SNP 54716 54716 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40088 SAMTools SNP 54761 54761 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40088 SAMTools SNP 54779 54779 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40088 SAMTools SNP 55339 55339 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40088 SAMTools SNP 55387 55387 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.14%2C0.0011%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C108:73 scaffold40088 SAMTools SNP 55420 55420 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C107:99 scaffold40088 SAMTools SNP 55477 55477 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold40088 SAMTools SNP 55489 55489 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold40088 SAMTools SNP 56118 56118 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C29:32 scaffold40088 SAMTools SNP 56631 56631 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40088 SAMTools SNP 56644 56644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40088 SAMTools SNP 57173 57173 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold40088 SAMTools SNP 57197 57197 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40088 SAMTools SNP 57221 57221 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold40088 SAMTools SNP 57654 57654 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40088 SAMTools SNP 57663 57663 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40088 SAMTools SNP 57715 57715 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.011%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C209:99 scaffold40088 SAMTools SNP 57720 57720 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0014%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold40088 SAMTools SNP 58076 58076 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C9%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold40088 SAMTools SNP 59353 59353 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C83%2C1%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40088 SAMTools SNP 59400 59400 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C66%2C0%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C5.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40088 SAMTools SNP 59427 59427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40088 SAMTools SNP 59445 59445 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D7.9e-06%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C183:99 scaffold40088 SAMTools SNP 59472 59472 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40088 SAMTools SNP 60170 60170 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40088 SAMTools SNP 60200 60200 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40088 SAMTools SNP 60308 60308 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40088 SAMTools SNP 60344 60344 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold40088 SAMTools SNP 61050 61050 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C30%2C0:57 scaffold40088 SAMTools SNP 61104 61104 60.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold40088 SAMTools SNP 61197 61197 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.18%2C1%2C8.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold40088 SAMTools SNP 61203 61203 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40088 SAMTools SNP 61548 61548 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40088 SAMTools SNP 62469 62469 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold40088 SAMTools SNP 67384 67384 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40088 SAMTools SNP 67733 67733 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40088 SAMTools SNP 67747 67747 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40088 SAMTools SNP 67986 67986 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40088 SAMTools SNP 67992 67992 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40088 SAMTools SNP 68036 68036 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40088 SAMTools SNP 68825 68825 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C29%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C54:57 scaffold40094 SAMTools SNP 1421 1421 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 1564 1564 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 4944 4944 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold40094 SAMTools SNP 10780 10780 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold40094 SAMTools SNP 13572 13572 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C18%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.022%2C4.2e-27%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C149:77 scaffold40094 SAMTools SNP 16539 16539 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40094 SAMTools SNP 16600 16600 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40094 SAMTools SNP 16605 16605 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40094 SAMTools SNP 25564 25564 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C18%2C0:33 scaffold40094 SAMTools SNP 28138 28138 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold40094 SAMTools SNP 28279 28279 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold40094 SAMTools SNP 29694 29694 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40094 SAMTools SNP 29712 29712 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40094 SAMTools SNP 29763 29763 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40094 SAMTools SNP 32814 32814 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 35235 35235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 35270 35270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 35836 35836 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40094 SAMTools SNP 40652 40652 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold40094 SAMTools SNP 41916 41916 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C19%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.24%2C4.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C238:99 scaffold40094 SAMTools SNP 42127 42127 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold40094 SAMTools SNP 42652 42652 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold40094 SAMTools SNP 45897 45897 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D40%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C60%2C0:99 scaffold40094 SAMTools SNP 45957 45957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C0%2C62%2C1%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 46114 46114 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 46546 46546 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C25%2C55%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.035%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 46563 46563 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C45%2C15%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 47212 47212 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D46%3BFQ%3D39%3BPV4%3D0.43%2C0.2%2C0.14%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C136:69 scaffold40094 SAMTools SNP 48473 48473 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40094 SAMTools SNP 49864 49864 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40094 SAMTools SNP 49867 49867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40094 SAMTools SNP 49882 49882 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40094 SAMTools SNP 49915 49915 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.62%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold40094 SAMTools SNP 51661 51661 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40094 SAMTools SNP 51724 51724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C56%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold40094 SAMTools SNP 52098 52098 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.59%2C0.11%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40094 SAMTools SNP 52263 52263 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C14%2C13%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.13%2C2.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold40094 SAMTools SNP 55608 55608 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.48%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold40094 SAMTools SNP 55621 55621 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold40094 SAMTools SNP 55729 55729 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold40094 SAMTools SNP 56929 56929 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 56980 56980 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40094 SAMTools SNP 57746 57746 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.00097%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C229:83 scaffold40094 SAMTools SNP 61001 61001 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.005%2C1e-05%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C164:99 scaffold40094 SAMTools SNP 61021 61021 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40094 SAMTools SNP 61024 61024 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold40094 SAMTools SNP 61051 61051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.008%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 62601 62601 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40094 SAMTools SNP 62616 62616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40094 SAMTools SNP 63455 63455 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold40094 SAMTools SNP 63979 63979 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40094 SAMTools SNP 64362 64362 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold40094 SAMTools SNP 64762 64762 19.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold40094 SAMTools SNP 65268 65268 39.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold40094 SAMTools SNP 65335 65335 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold40094 SAMTools SNP 65485 65485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40094 SAMTools SNP 65527 65527 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C184:65 scaffold40094 SAMTools SNP 66617 66617 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40094 SAMTools SNP 67620 67620 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D48%3BFQ%3D47%3BPV4%3D0.49%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C210:77 scaffold40094 SAMTools SNP 67707 67707 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C36%2C0:69 scaffold40094 SAMTools SNP 69104 69104 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C11%2C17%3BMQ%3D43%3BFQ%3D187%3BPV4%3D0.77%2C0.19%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold40094 SAMTools SNP 71916 71916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold40094 SAMTools SNP 74252 74252 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.42%3BPV4%3D1%2C0.0025%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C35:38 scaffold40094 SAMTools SNP 81875 81875 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold401 SAMTools SNP 10363 10363 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold401 SAMTools SNP 13526 13526 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.15%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C157:42 scaffold401 SAMTools SNP 13538 13538 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C120:34 scaffold401 SAMTools SNP 13581 13581 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.048%2C8.5e-06%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C206:28 scaffold401 SAMTools SNP 19093 19093 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C226:99 scaffold401 SAMTools SNP 27607 27607 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold401 SAMTools SNP 45032 45032 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold401 SAMTools SNP 52794 52794 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold401 SAMTools SNP 53655 53655 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1184%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C249%2C315%2C140%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-10%2C5.3e-54%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold401 SAMTools SNP 56483 56483 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold401 SAMTools SNP 65469 65469 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold401 SAMTools SNP 65497 65497 34.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold401 SAMTools SNP 70272 70272 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold401 SAMTools SNP 70896 70896 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold401 SAMTools SNP 71221 71221 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold401 SAMTools SNP 71392 71392 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C240:55 scaffold401 SAMTools SNP 125173 125173 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C175:69 scaffold401 SAMTools SNP 125596 125596 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C3.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold401 SAMTools SNP 137256 137256 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold401 SAMTools SNP 144690 144690 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold401 SAMTools SNP 150447 150447 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold401 SAMTools SNP 151516 151516 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C118:78 scaffold401 SAMTools SNP 151527 151527 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.001%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C115:51 scaffold401 SAMTools SNP 152039 152039 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40100 SAMTools SNP 40156 40156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40100 SAMTools SNP 40427 40427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C47%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40100 SAMTools SNP 40463 40463 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C9%2C67%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40100 SAMTools SNP 41779 41779 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40100 SAMTools SNP 41803 41803 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.16%2C0.056%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold40100 SAMTools SNP 41982 41982 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C12%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.057%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold40100 SAMTools SNP 42015 42015 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold40100 SAMTools SNP 42500 42500 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C0%2C12%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold40100 SAMTools SNP 42520 42520 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C12%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C240:99 scaffold40100 SAMTools SNP 42942 42942 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40100 SAMTools SNP 42953 42953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 42957 42957 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 43330 43330 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.01%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold40100 SAMTools SNP 56987 56987 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 57158 57158 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 62384 62384 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 63241 63241 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold40100 SAMTools SNP 63428 63428 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.6%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold40100 SAMTools SNP 64438 64438 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C148%2C0:99 scaffold40100 SAMTools SNP 64478 64478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C8%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold40100 SAMTools SNP 65005 65005 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C31%2C18%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40100 SAMTools SNP 66386 66386 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold40100 SAMTools SNP 66398 66398 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C50%2C0%2C37%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.27%2C1.2e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold40100 SAMTools SNP 68748 68748 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C84%2C0:99 scaffold40100 SAMTools SNP 70420 70420 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C75%2C0:99 scaffold40100 SAMTools SNP 71313 71313 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C13%2C0%3BMQ%3D49%3BFQ%3D140%3BPV4%3D0.096%2C4.9e-15%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold40100 SAMTools SNP 73844 73844 6.97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D3%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C63%2C0:51 scaffold40100 SAMTools SNP 77128 77128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 77129 77129 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40100 SAMTools SNP 77170 77170 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40100 SAMTools SNP 79097 79097 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold40100 SAMTools SNP 79352 79352 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40100 SAMTools SNP 79388 79388 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold40100 SAMTools SNP 80230 80230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40100 SAMTools SNP 80257 80257 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40100 SAMTools SNP 82463 82463 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40100 SAMTools SNP 83773 83773 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C8%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold40100 SAMTools SNP 83794 83794 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40104 SAMTools SNP 64225 64225 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40104 SAMTools SNP 69557 69557 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold40104 SAMTools SNP 80671 80671 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold40106 SAMTools SNP 967 967 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40106 SAMTools SNP 1033 1033 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40106 SAMTools SNP 1279 1279 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40106 SAMTools SNP 1297 1297 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold40106 SAMTools SNP 14195 14195 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40106 SAMTools SNP 15796 15796 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40106 SAMTools SNP 22080 22080 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40106 SAMTools SNP 22783 22783 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold40106 SAMTools SNP 25552 25552 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C60%2C0:99 scaffold40106 SAMTools SNP 25647 25647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 26109 26109 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C24%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 28195 28195 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C25%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 28216 28216 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C199:79 scaffold40106 SAMTools SNP 28246 28246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40106 SAMTools SNP 28297 28297 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00064%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 28832 28832 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold40106 SAMTools SNP 29937 29937 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 31349 31349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 32596 32596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C28%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 34604 34604 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold40106 SAMTools SNP 37853 37853 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40106 SAMTools SNP 38068 38068 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C78%2C12%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.003%2C1%2C1.5e-59;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 38513 38513 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C132%2C1%2C71%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.024%2C1%2C1%2C5.1e-54;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold40106 SAMTools SNP 38532 38532 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40106 SAMTools SNP 38558 38558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold40106 SAMTools SNP 38563 38563 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C13%2C10%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.43%2C1%2C1%2C6.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold40106 SAMTools SNP 38617 38617 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.00011%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 38629 38629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-05%2C0.014%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 39865 39865 212 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C31%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.016%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C229:99 scaffold40106 SAMTools SNP 39886 39886 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C205:28 scaffold40106 SAMTools SNP 40147 40147 33.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold40106 SAMTools SNP 43315 43315 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C6.6e-13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold40106 SAMTools SNP 43715 43715 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C45%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 46470 46470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40106 SAMTools SNP 48862 48862 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold40106 SAMTools SNP 48911 48911 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold40106 SAMTools SNP 50066 50066 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold40106 SAMTools SNP 50392 50392 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40106 SAMTools SNP 51390 51390 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40106 SAMTools SNP 51677 51677 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40106 SAMTools SNP 52018 52018 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40106 SAMTools SNP 52024 52024 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40106 SAMTools SNP 53048 53048 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold40106 SAMTools SNP 53124 53124 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C4.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold40106 SAMTools SNP 53142 53142 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40106 SAMTools SNP 53502 53502 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40106 SAMTools SNP 53505 53505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40106 SAMTools SNP 53604 53604 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C6%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.48%2C0.026%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold40106 SAMTools SNP 54313 54313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40106 SAMTools SNP 55204 55204 6.95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold40106 SAMTools SNP 64282 64282 30.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold40106 SAMTools SNP 64401 64401 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold40106 SAMTools SNP 69374 69374 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.0021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold40106 SAMTools SNP 69656 69656 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40106 SAMTools SNP 69683 69683 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40106 SAMTools SNP 70543 70543 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40106 SAMTools SNP 70545 70545 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40106 SAMTools SNP 80045 80045 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40106 SAMTools SNP 80592 80592 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40106 SAMTools SNP 84000 84000 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40106 SAMTools SNP 84043 84043 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40114 SAMTools SNP 10542 10542 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold40114 SAMTools SNP 10564 10564 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 11234 11234 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40114 SAMTools SNP 20824 20824 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40114 SAMTools SNP 21260 21260 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 21263 21263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 21314 21314 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold40114 SAMTools SNP 21399 21399 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40114 SAMTools SNP 24386 24386 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold40114 SAMTools SNP 24455 24455 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40114 SAMTools SNP 24479 24479 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold40114 SAMTools SNP 25710 25710 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C41%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 26004 26004 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C35%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold40114 SAMTools SNP 26213 26213 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 26303 26303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40114 SAMTools SNP 28273 28273 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40114 SAMTools SNP 30697 30697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C40%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40114 SAMTools SNP 30895 30895 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold40114 SAMTools SNP 31359 31359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.36%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 31398 31398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C11%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40114 SAMTools SNP 32738 32738 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C21%2C46%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40114 SAMTools SNP 32912 32912 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.3%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40114 SAMTools SNP 32918 32918 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold40114 SAMTools SNP 34396 34396 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C205:99 scaffold40114 SAMTools SNP 34398 34398 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C254:48 scaffold40114 SAMTools SNP 40218 40218 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40114 SAMTools SNP 41010 41010 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold40114 SAMTools SNP 44126 44126 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.32%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C113:30 scaffold40114 SAMTools SNP 44383 44383 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40114 SAMTools SNP 44396 44396 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40114 SAMTools SNP 45663 45663 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40114 SAMTools SNP 45664 45664 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40114 SAMTools SNP 46181 46181 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40114 SAMTools SNP 49261 49261 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40114 SAMTools SNP 49292 49292 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40114 SAMTools SNP 49933 49933 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40114 SAMTools SNP 50102 50102 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold40114 SAMTools SNP 50358 50358 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40114 SAMTools SNP 50463 50463 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold40114 SAMTools SNP 50636 50636 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold40114 SAMTools SNP 51825 51825 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold40114 SAMTools SNP 51865 51865 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40114 SAMTools SNP 52311 52311 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D0.25%2C0.00066%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold40114 SAMTools SNP 57622 57622 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold40114 SAMTools SNP 77743 77743 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40114 SAMTools SNP 77761 77761 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D327%2C0%2C106%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold40114 SAMTools SNP 80725 80725 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1585%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D372%2C861%2C60%2C292%3BMQ%3D50%3BFQ%3D136%3BPV4%3D6.4e-07%2C2.7e-22%2C1%2C7.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold40114 SAMTools SNP 85044 85044 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1360%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C865%2C1%2C318%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1.4e-20%2C1.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold40114 SAMTools SNP 85151 85151 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40120 SAMTools SNP 18093 18093 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40120 SAMTools SNP 27460 27460 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40120 SAMTools SNP 27658 27658 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold40120 SAMTools SNP 33120 33120 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold40120 SAMTools SNP 53466 53466 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D27%3BFQ%3D23.9%3BPV4%3D0.16%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C68:54 scaffold40120 SAMTools SNP 53481 53481 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C0%3BMQ%3D37%3BFQ%3D40%3BPV4%3D0.11%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C179:70 scaffold40120 SAMTools SNP 53526 53526 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C8%2C26%2C2%3BMQ%3D48%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold40134 SAMTools SNP 19370 19370 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C32:35 scaffold40134 SAMTools SNP 19382 19382 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold40134 SAMTools SNP 19471 19471 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C27%2C0:51 scaffold40134 SAMTools SNP 19775 19775 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00021%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C74:55 scaffold40134 SAMTools SNP 23222 23222 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C42%2C0:81 scaffold40134 SAMTools SNP 31634 31634 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold40134 SAMTools SNP 39148 39148 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40134 SAMTools SNP 39622 39622 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40134 SAMTools SNP 43131 43131 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold40134 SAMTools SNP 56125 56125 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40134 SAMTools SNP 56321 56321 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40134 SAMTools SNP 56977 56977 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold40134 SAMTools SNP 56980 56980 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold40134 SAMTools SNP 62990 62990 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C251:66 scaffold40134 SAMTools SNP 63023 63023 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.068%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold40134 SAMTools SNP 64945 64945 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold40134 SAMTools SNP 64957 64957 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold40134 SAMTools SNP 64985 64985 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C152:99 scaffold40134 SAMTools SNP 64996 64996 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40134 SAMTools SNP 66725 66725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold40134 SAMTools SNP 67679 67679 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold40134 SAMTools SNP 68349 68349 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold40140 SAMTools SNP 5740 5740 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C7.5e-05%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C14:17 scaffold40140 SAMTools SNP 78546 78546 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40140 SAMTools SNP 81123 81123 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold40140 SAMTools SNP 82175 82175 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C5%2C0%3BMQ%3D46%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40140 SAMTools SNP 82465 82465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C13%3BMQ%3D48%3BFQ%3D-76%3BPV4%3D0.42%2C0.31%2C0.4%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold40140 SAMTools SNP 82492 82492 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C0%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.091%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40140 SAMTools SNP 82497 82497 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.39%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40140 SAMTools SNP 82621 82621 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40140 SAMTools SNP 83484 83484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C0.002%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40140 SAMTools SNP 83772 83772 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C20%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.34%2C0.18%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40140 SAMTools SNP 83818 83818 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold40140 SAMTools SNP 84705 84705 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C80:76 scaffold40150 SAMTools SNP 21891 21891 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40150 SAMTools SNP 22032 22032 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40150 SAMTools SNP 27097 27097 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40150 SAMTools SNP 27296 27296 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40150 SAMTools SNP 28837 28837 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold40150 SAMTools SNP 29495 29495 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40150 SAMTools SNP 29758 29758 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold40150 SAMTools SNP 29793 29793 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40150 SAMTools SNP 29807 29807 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40150 SAMTools SNP 30276 30276 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40150 SAMTools SNP 30474 30474 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40150 SAMTools SNP 30926 30926 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40150 SAMTools SNP 30952 30952 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold40150 SAMTools SNP 31453 31453 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold40150 SAMTools SNP 31525 31525 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.68%2C2.1e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold40150 SAMTools SNP 31951 31951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40150 SAMTools SNP 31971 31971 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40150 SAMTools SNP 32194 32194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold40150 SAMTools SNP 32208 32208 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C3%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold40150 SAMTools SNP 32237 32237 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C7.9e-08%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40150 SAMTools SNP 32330 32330 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C17%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.4e-36%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold40150 SAMTools SNP 32552 32552 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold40150 SAMTools SNP 33194 33194 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C8.3e-23%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold40150 SAMTools SNP 33293 33293 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40150 SAMTools SNP 33674 33674 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C18%2C0:33 scaffold40150 SAMTools SNP 33916 33916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40150 SAMTools SNP 34867 34867 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40150 SAMTools SNP 37063 37063 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40150 SAMTools SNP 37231 37231 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40150 SAMTools SNP 37253 37253 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40150 SAMTools SNP 37262 37262 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40150 SAMTools SNP 37431 37431 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40150 SAMTools SNP 37760 37760 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40150 SAMTools SNP 37868 37868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40150 SAMTools SNP 38144 38144 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold40150 SAMTools SNP 38292 38292 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.49%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold40150 SAMTools SNP 38310 38310 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.49%2C0.11%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold40150 SAMTools SNP 38814 38814 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40150 SAMTools SNP 39658 39658 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C156:60 scaffold40150 SAMTools SNP 43112 43112 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C80:79 scaffold40150 SAMTools SNP 43264 43264 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C30%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold40150 SAMTools SNP 44586 44586 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C2%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40150 SAMTools SNP 44604 44604 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.37%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold40150 SAMTools SNP 46388 46388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40150 SAMTools SNP 46462 46462 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold40150 SAMTools SNP 47057 47057 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40150 SAMTools SNP 47085 47085 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40150 SAMTools SNP 47942 47942 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold40150 SAMTools SNP 48020 48020 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.22%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C112:99 scaffold40150 SAMTools SNP 49099 49099 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.51%2C0.024%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40150 SAMTools SNP 49383 49383 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40150 SAMTools SNP 61310 61310 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C33%2C0:63 scaffold40150 SAMTools SNP 61601 61601 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C28%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C253:99 scaffold40150 SAMTools SNP 66410 66410 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C20%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C251:99 scaffold40150 SAMTools SNP 75392 75392 17.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold40150 SAMTools SNP 76555 76555 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold40150 SAMTools SNP 81495 81495 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40150 SAMTools SNP 81890 81890 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40150 SAMTools SNP 81897 81897 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold40150 SAMTools SNP 84748 84748 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40154 SAMTools SNP 706 706 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40154 SAMTools SNP 2063 2063 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C0%2C12%2C0%3BMQ%3D47%3BFQ%3D9.53%3BPV4%3D1%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C216:37 scaffold40154 SAMTools SNP 14230 14230 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold40154 SAMTools SNP 15265 15265 4.75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold40154 SAMTools SNP 15876 15876 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C157:49 scaffold40154 SAMTools SNP 16120 16120 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C132%2C0:99 scaffold40154 SAMTools SNP 31036 31036 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40154 SAMTools SNP 54380 54380 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C22%3BMQ%3D42%3BFQ%3D28.5%3BPV4%3D1%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C56:58 scaffold40154 SAMTools SNP 82392 82392 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40154 SAMTools SNP 82443 82443 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold40156 SAMTools SNP 41963 41963 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40156 SAMTools SNP 43151 43151 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40156 SAMTools SNP 51048 51048 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold40156 SAMTools SNP 53055 53055 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1118%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D339%2C272%2C179%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40156 SAMTools SNP 53064 53064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D960%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D248%2C280%2C98%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40156 SAMTools SNP 55123 55123 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D623%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D260%2C56%2C249%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.92%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40156 SAMTools SNP 55177 55177 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D771%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C248%2C513%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40156 SAMTools SNP 56343 56343 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C232%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40156 SAMTools SNP 56724 56724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C45%2C14%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40156 SAMTools SNP 57568 57568 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C53%3BMQ%3D49%3BFQ%3D127%3BPV4%3D0.39%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C154:99 scaffold40156 SAMTools SNP 57589 57589 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold40156 SAMTools SNP 58675 58675 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C65%2C4%3BMQ%3D48%3BFQ%3D165%3BPV4%3D1%2C0.041%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold40156 SAMTools SNP 59904 59904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40156 SAMTools SNP 61348 61348 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40156 SAMTools SNP 64846 64846 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40156 SAMTools SNP 65613 65613 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40156 SAMTools SNP 67075 67075 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40156 SAMTools SNP 67151 67151 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C57%2C0:93 scaffold40156 SAMTools SNP 67449 67449 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold40156 SAMTools SNP 67749 67749 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C50%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D2.6e-10%2C2.9e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold40156 SAMTools SNP 67788 67788 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C6%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.13%2C1.4e-11%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold40156 SAMTools SNP 67870 67870 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C49%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0053%2C7.6e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40156 SAMTools SNP 68478 68478 44.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold40156 SAMTools SNP 68647 68647 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C4.5e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C85:28 scaffold40162 SAMTools SNP 2781 2781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 2899 2899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 26561 26561 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40162 SAMTools SNP 26596 26596 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 28219 28219 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40162 SAMTools SNP 28282 28282 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 28974 28974 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40162 SAMTools SNP 32218 32218 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold40162 SAMTools SNP 32224 32224 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40162 SAMTools SNP 32240 32240 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C86:41 scaffold40162 SAMTools SNP 32243 32243 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C35:38 scaffold40162 SAMTools SNP 32287 32287 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40162 SAMTools SNP 32329 32329 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 36025 36025 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40162 SAMTools SNP 37973 37973 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.21%2C0.21%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold40162 SAMTools SNP 38010 38010 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40162 SAMTools SNP 38039 38039 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40162 SAMTools SNP 40330 40330 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 41566 41566 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40162 SAMTools SNP 46134 46134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40162 SAMTools SNP 46496 46496 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40162 SAMTools SNP 47237 47237 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40162 SAMTools SNP 70024 70024 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold40162 SAMTools SNP 70041 70041 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40162 SAMTools SNP 77881 77881 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold40162 SAMTools SNP 79228 79228 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40164 SAMTools SNP 29566 29566 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold40164 SAMTools SNP 34964 34964 7.08 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C18%2C0:21 scaffold40164 SAMTools SNP 63405 63405 7.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold40164 SAMTools SNP 63780 63780 27.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold40164 SAMTools SNP 63835 63835 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D25%3BFQ%3D5.49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold40172 SAMTools SNP 24395 24395 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold40172 SAMTools SNP 24428 24428 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold40172 SAMTools SNP 24845 24845 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40172 SAMTools SNP 26803 26803 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40172 SAMTools SNP 27037 27037 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C153:36 scaffold40172 SAMTools SNP 27070 27070 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40172 SAMTools SNP 27073 27073 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40172 SAMTools SNP 27079 27079 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.23%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold40172 SAMTools SNP 27124 27124 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C203:99 scaffold40172 SAMTools SNP 27262 27262 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold40172 SAMTools SNP 27263 27263 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold40172 SAMTools SNP 27321 27321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40172 SAMTools SNP 27468 27468 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold40172 SAMTools SNP 27469 27469 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.28%2C0.39%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold40172 SAMTools SNP 28361 28361 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40172 SAMTools SNP 28388 28388 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40172 SAMTools SNP 28610 28610 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40172 SAMTools SNP 28829 28829 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40172 SAMTools SNP 28856 28856 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold40172 SAMTools SNP 28925 28925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40172 SAMTools SNP 29578 29578 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40172 SAMTools SNP 29788 29788 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40172 SAMTools SNP 30478 30478 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40172 SAMTools SNP 30514 30514 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold40172 SAMTools SNP 30556 30556 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.5%2C0.052%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold40172 SAMTools SNP 30960 30960 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold40172 SAMTools SNP 31169 31169 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40172 SAMTools SNP 31193 31193 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40172 SAMTools SNP 31301 31301 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40172 SAMTools SNP 31768 31768 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold40172 SAMTools SNP 32294 32294 28.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold40172 SAMTools SNP 32486 32486 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40172 SAMTools SNP 32822 32822 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold40172 SAMTools SNP 32840 32840 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold40172 SAMTools SNP 33374 33374 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40172 SAMTools SNP 33533 33533 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40172 SAMTools SNP 33553 33553 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40172 SAMTools SNP 33862 33862 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40172 SAMTools SNP 34164 34164 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40172 SAMTools SNP 34193 34193 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40172 SAMTools SNP 35038 35038 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40172 SAMTools SNP 35070 35070 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40172 SAMTools SNP 53023 53023 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40178 SAMTools SNP 25446 25446 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C100:47 scaffold40178 SAMTools SNP 25471 25471 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C82:57 scaffold40178 SAMTools SNP 34885 34885 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40178 SAMTools SNP 35102 35102 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold40178 SAMTools SNP 35167 35167 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C42%2C0:81 scaffold40178 SAMTools SNP 38979 38979 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C2%3BMQ%3D44%3BFQ%3D101%3BPV4%3D1%2C0.2%2C0.32%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C151:99 scaffold40178 SAMTools SNP 39188 39188 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40178 SAMTools SNP 39225 39225 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold40178 SAMTools SNP 40145 40145 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C185:99 scaffold40178 SAMTools SNP 40535 40535 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold40178 SAMTools SNP 40582 40582 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40178 SAMTools SNP 42944 42944 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold40178 SAMTools SNP 42992 42992 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold40178 SAMTools SNP 43251 43251 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold40178 SAMTools SNP 43329 43329 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40178 SAMTools SNP 43507 43507 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold40178 SAMTools SNP 43540 43540 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40178 SAMTools SNP 43848 43848 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40178 SAMTools SNP 43866 43866 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40178 SAMTools SNP 44244 44244 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40178 SAMTools SNP 44256 44256 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40178 SAMTools SNP 50395 50395 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold40178 SAMTools SNP 50434 50434 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40178 SAMTools SNP 83725 83725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40178 SAMTools SNP 83727 83727 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold40178 SAMTools SNP 84419 84419 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold40178 SAMTools SNP 85262 85262 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40182 SAMTools SNP 6874 6874 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40182 SAMTools SNP 7047 7047 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C7%2C37%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.72%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold40182 SAMTools SNP 7053 7053 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C9%2C32%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold40182 SAMTools SNP 7179 7179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C214%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40182 SAMTools SNP 7201 7201 67.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold40182 SAMTools SNP 7279 7279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C147%2C108%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1.5e-138%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 8294 8294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C23%2C21%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-06%2C1%2C1%2C6.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 8298 8298 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C15%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 8369 8369 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C88%2C68%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 9226 9226 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D555%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D286%2C93%2C126%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C7.5e-49%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 9247 9247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40182 SAMTools SNP 9977 9977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D264%2C22%2C220%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 10956 10956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C20%2C48%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 11510 11510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C27%2C55%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 11999 11999 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40182 SAMTools SNP 12580 12580 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1469%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D225%2C487%2C257%2C479%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.18%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold40182 SAMTools SNP 12927 12927 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40182 SAMTools SNP 13070 13070 30.5 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C47%2C35%2C58%2C0%2C55:21 scaffold40182 SAMTools SNP 14489 14489 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C22%2C162%2C13%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.15%2C4.1e-146%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold40182 SAMTools SNP 26772 26772 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold40182 SAMTools SNP 28935 28935 51.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold40182 SAMTools SNP 29080 29080 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C30%2C0:57 scaffold40182 SAMTools SNP 39328 39328 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.21%2C4.8e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C254:71 scaffold40182 SAMTools SNP 42260 42260 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D0.2%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold40182 SAMTools SNP 42305 42305 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold40182 SAMTools SNP 50145 50145 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40182 SAMTools SNP 53478 53478 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C21%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0067%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold40182 SAMTools SNP 54512 54512 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold40182 SAMTools SNP 55028 55028 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold40182 SAMTools SNP 56618 56618 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C182:34 scaffold40182 SAMTools SNP 57355 57355 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40182 SAMTools SNP 58259 58259 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C255%2C0:99 scaffold40182 SAMTools SNP 58500 58500 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40182 SAMTools SNP 58733 58733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40182 SAMTools SNP 58773 58773 218 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C36%2C0%2C230%2C4%2C227:69 scaffold40182 SAMTools SNP 58815 58815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40182 SAMTools SNP 58836 58836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40182 SAMTools SNP 59089 59089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C15%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40182 SAMTools SNP 59125 59125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40182 SAMTools SNP 59254 59254 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40182 SAMTools SNP 59837 59837 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40182 SAMTools SNP 60010 60010 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40182 SAMTools SNP 60028 60028 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40182 SAMTools SNP 60064 60064 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40182 SAMTools SNP 60100 60100 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40182 SAMTools SNP 61314 61314 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C8%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00099%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40182 SAMTools SNP 67064 67064 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C72%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold40182 SAMTools SNP 67500 67500 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.7e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40182 SAMTools SNP 67516 67516 62.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold40182 SAMTools SNP 67534 67534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40182 SAMTools SNP 67576 67576 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C49%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C157%2C0:99 scaffold40184 SAMTools SNP 1716 1716 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 4586 4586 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold40184 SAMTools SNP 40519 40519 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold40184 SAMTools SNP 44067 44067 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40184 SAMTools SNP 44583 44583 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40184 SAMTools SNP 45152 45152 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C122:40 scaffold40184 SAMTools SNP 45297 45297 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40184 SAMTools SNP 46399 46399 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40184 SAMTools SNP 46416 46416 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40184 SAMTools SNP 47036 47036 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40184 SAMTools SNP 47681 47681 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold40184 SAMTools SNP 48000 48000 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40184 SAMTools SNP 50107 50107 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.018%2C0.0019%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C242:53 scaffold40184 SAMTools SNP 50174 50174 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.15%3BPV4%3D0.33%2C5.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C32:35 scaffold40184 SAMTools SNP 50237 50237 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40184 SAMTools SNP 52592 52592 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 52607 52607 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 54894 54894 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.47%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C245:39 scaffold40184 SAMTools SNP 54937 54937 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold40184 SAMTools SNP 55096 55096 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40184 SAMTools SNP 57212 57212 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C36%2C0:69 scaffold40184 SAMTools SNP 57419 57419 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold40184 SAMTools SNP 59871 59871 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold40184 SAMTools SNP 62959 62959 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold40184 SAMTools SNP 67724 67724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40184 SAMTools SNP 67986 67986 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold40184 SAMTools SNP 68025 68025 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold40184 SAMTools SNP 69688 69688 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40184 SAMTools SNP 69712 69712 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 70277 70277 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40184 SAMTools SNP 70359 70359 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40184 SAMTools SNP 70414 70414 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40184 SAMTools SNP 71719 71719 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 74270 74270 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40184 SAMTools SNP 76645 76645 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40184 SAMTools SNP 76655 76655 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40184 SAMTools SNP 79701 79701 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold40184 SAMTools SNP 83308 83308 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40186 SAMTools SNP 1590 1590 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40186 SAMTools SNP 1702 1702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40186 SAMTools SNP 1763 1763 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold40186 SAMTools SNP 1802 1802 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold40186 SAMTools SNP 4887 4887 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40186 SAMTools SNP 8715 8715 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40186 SAMTools SNP 8896 8896 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C0.2%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C177:99 scaffold40186 SAMTools SNP 12116 12116 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold40186 SAMTools SNP 18337 18337 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C190:80 scaffold40186 SAMTools SNP 19290 19290 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C0.055%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold40186 SAMTools SNP 19292 19292 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40186 SAMTools SNP 19305 19305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40186 SAMTools SNP 22340 22340 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold40186 SAMTools SNP 36110 36110 67.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C0:39 scaffold40186 SAMTools SNP 36179 36179 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold40186 SAMTools SNP 58780 58780 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40186 SAMTools SNP 59628 59628 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40186 SAMTools SNP 61317 61317 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold40186 SAMTools SNP 67903 67903 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C7.9e-13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C203:65 scaffold40186 SAMTools SNP 68566 68566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40186 SAMTools SNP 68632 68632 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C0.048%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C198:99 scaffold40186 SAMTools SNP 68674 68674 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold40186 SAMTools SNP 68680 68680 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.27%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold40186 SAMTools SNP 70460 70460 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40186 SAMTools SNP 70517 70517 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C66:69 scaffold40186 SAMTools SNP 72180 72180 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40194 SAMTools SNP 715 715 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40194 SAMTools SNP 730 730 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C18%2C0:33 scaffold40194 SAMTools SNP 785 785 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40194 SAMTools SNP 2412 2412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C8%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold40194 SAMTools SNP 3294 3294 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold40194 SAMTools SNP 3309 3309 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold40194 SAMTools SNP 3324 3324 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold40194 SAMTools SNP 3414 3414 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40194 SAMTools SNP 11228 11228 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.53%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold40194 SAMTools SNP 11240 11240 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold40194 SAMTools SNP 11366 11366 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold40194 SAMTools SNP 11733 11733 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold40194 SAMTools SNP 11865 11865 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C132:99 scaffold40194 SAMTools SNP 12122 12122 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D102%3BPV4%3D0.3%2C1%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C235:99 scaffold40194 SAMTools SNP 12185 12185 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C12%3BMQ%3D47%3BFQ%3D-12.3%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold40194 SAMTools SNP 13667 13667 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D37%3BFQ%3D-50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C23%2C0:43 scaffold40194 SAMTools SNP 13700 13700 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40194 SAMTools SNP 13960 13960 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40194 SAMTools SNP 14920 14920 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40194 SAMTools SNP 17475 17475 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40194 SAMTools SNP 17531 17531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold40194 SAMTools SNP 17991 17991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40194 SAMTools SNP 18063 18063 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C176%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.064%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40194 SAMTools SNP 18431 18431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C204%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.35%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40194 SAMTools SNP 24225 24225 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40194 SAMTools SNP 24613 24613 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold40194 SAMTools SNP 25935 25935 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40194 SAMTools SNP 26399 26399 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold40194 SAMTools SNP 26469 26469 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40194 SAMTools SNP 26478 26478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40194 SAMTools SNP 26520 26520 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40194 SAMTools SNP 27249 27249 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40194 SAMTools SNP 27261 27261 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40194 SAMTools SNP 27297 27297 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40194 SAMTools SNP 27797 27797 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40194 SAMTools SNP 46076 46076 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold40196 SAMTools SNP 300 300 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40196 SAMTools SNP 82245 82245 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold402 SAMTools SNP 37030 37030 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 37039 37039 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 37506 37506 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold402 SAMTools SNP 67664 67664 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold402 SAMTools SNP 67734 67734 27.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold402 SAMTools SNP 103496 103496 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 147710 147710 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold402 SAMTools SNP 154237 154237 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold402 SAMTools SNP 154341 154341 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 154417 154417 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.36%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold402 SAMTools SNP 154557 154557 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold402 SAMTools SNP 154560 154560 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold402 SAMTools SNP 154906 154906 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold402 SAMTools SNP 155206 155206 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold402 SAMTools SNP 155365 155365 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold402 SAMTools SNP 155493 155493 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold402 SAMTools SNP 155767 155767 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold402 SAMTools SNP 156139 156139 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold402 SAMTools SNP 157731 157731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 158252 158252 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C15%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold402 SAMTools SNP 158603 158603 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.36%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold402 SAMTools SNP 159467 159467 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold402 SAMTools SNP 160312 160312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold402 SAMTools SNP 160324 160324 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold402 SAMTools SNP 172033 172033 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold402 SAMTools SNP 179375 179375 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold402 SAMTools SNP 181900 181900 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold402 SAMTools SNP 184544 184544 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold402 SAMTools SNP 220100 220100 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold402 SAMTools SNP 220205 220205 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 226898 226898 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold402 SAMTools SNP 282619 282619 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold402 SAMTools SNP 292819 292819 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold402 SAMTools SNP 297884 297884 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold402 SAMTools SNP 299906 299906 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold402 SAMTools SNP 301480 301480 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.019%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold402 SAMTools SNP 301922 301922 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.13%2C0.19%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold402 SAMTools SNP 302149 302149 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold402 SAMTools SNP 303722 303722 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.033%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold402 SAMTools SNP 304146 304146 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold402 SAMTools SNP 304184 304184 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold402 SAMTools SNP 308441 308441 16.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold402 SAMTools SNP 309827 309827 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold402 SAMTools SNP 310588 310588 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C228:99 scaffold402 SAMTools SNP 311272 311272 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C150:99 scaffold402 SAMTools SNP 311736 311736 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold402 SAMTools SNP 312631 312631 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.29%2C1.7e-06%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C236:99 scaffold402 SAMTools SNP 313175 313175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C76%3BMQ%3D50%3BFQ%3D-256%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold402 SAMTools SNP 313504 313504 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.18%2C8.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold402 SAMTools SNP 344156 344156 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold402 SAMTools SNP 344168 344168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold402 SAMTools SNP 346975 346975 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.058%2C0.018%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold402 SAMTools SNP 347692 347692 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold402 SAMTools SNP 348050 348050 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold402 SAMTools SNP 348072 348072 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.09%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold402 SAMTools SNP 351211 351211 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C15%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.00082%2C1.6e-10%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold402 SAMTools SNP 351934 351934 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold402 SAMTools SNP 351935 351935 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold402 SAMTools SNP 354522 354522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.0075%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 354563 354563 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.09%2C3.1e-08%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold402 SAMTools SNP 369205 369205 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C0%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.051%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold402 SAMTools SNP 369437 369437 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold402 SAMTools SNP 376993 376993 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.082%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold402 SAMTools SNP 378134 378134 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 378759 378759 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold402 SAMTools SNP 380911 380911 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C19%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold402 SAMTools SNP 381294 381294 39.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold402 SAMTools SNP 398759 398759 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold402 SAMTools SNP 401560 401560 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C2%2C39%2C0%3BMQ%3D31%3BFQ%3D79%3BPV4%3D1%2C6.3e-07%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C169:99 scaffold402 SAMTools SNP 406642 406642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C58%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold402 SAMTools SNP 407322 407322 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold402 SAMTools SNP 409776 409776 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold402 SAMTools SNP 420468 420468 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C62%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 429271 429271 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold402 SAMTools SNP 431460 431460 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold402 SAMTools SNP 436568 436568 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C52%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C202%2C0:99 scaffold402 SAMTools SNP 446643 446643 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C0%2C15%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.54%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold402 SAMTools SNP 453783 453783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold402 SAMTools SNP 453807 453807 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.64%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold402 SAMTools SNP 453813 453813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold402 SAMTools SNP 454347 454347 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C25%2C43%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D0.15%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold402 SAMTools SNP 454703 454703 33.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold402 SAMTools SNP 460007 460007 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold402 SAMTools SNP 460572 460572 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C57%2C0:99 scaffold402 SAMTools SNP 461384 461384 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C63%2C0%2C66%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D2.6e-05%2C2e-34%2C0.14%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold402 SAMTools SNP 462115 462115 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C36%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold402 SAMTools SNP 463022 463022 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold402 SAMTools SNP 465697 465697 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C217%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C255%2C0:99 scaffold402 SAMTools SNP 465746 465746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold402 SAMTools SNP 466055 466055 117 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C178%2C0%2C151%2C161%2C148:99 scaffold402 SAMTools SNP 466114 466114 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold402 SAMTools SNP 467282 467282 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C7.8e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C43%2C0:83 scaffold402 SAMTools SNP 500116 500116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold402 SAMTools SNP 511905 511905 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold402 SAMTools SNP 512517 512517 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C79:42 scaffold402 SAMTools SNP 513117 513117 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.069%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C222:67 scaffold402 SAMTools SNP 514602 514602 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C8.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C157:43 scaffold402 SAMTools SNP 516840 516840 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold402 SAMTools SNP 519027 519027 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.006%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C197:31 scaffold402 SAMTools SNP 519282 519282 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.13%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold402 SAMTools SNP 519351 519351 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.4%2C0.0094%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C123:70 scaffold402 SAMTools SNP 526624 526624 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D45%3BFQ%3D-43%3BPV4%3D0.18%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C16%2C0:29 scaffold402 SAMTools SNP 528354 528354 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold402 SAMTools SNP 528485 528485 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold402 SAMTools SNP 528771 528771 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.49%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold402 SAMTools SNP 529296 529296 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold402 SAMTools SNP 529539 529539 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold402 SAMTools SNP 559344 559344 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold402 SAMTools SNP 559377 559377 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold402 SAMTools SNP 559880 559880 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold402 SAMTools SNP 559905 559905 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold402 SAMTools SNP 561674 561674 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold402 SAMTools SNP 561678 561678 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.2%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C66:69 scaffold402 SAMTools SNP 563887 563887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.27%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold402 SAMTools SNP 564245 564245 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C0.21%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold402 SAMTools SNP 564271 564271 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0065%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold402 SAMTools SNP 564422 564422 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0221%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.49%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold402 SAMTools SNP 565723 565723 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold402 SAMTools SNP 565775 565775 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold402 SAMTools SNP 565993 565993 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C18%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.57%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold402 SAMTools SNP 566720 566720 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold402 SAMTools SNP 567324 567324 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold402 SAMTools SNP 570729 570729 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold402 SAMTools SNP 570938 570938 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C0%2C89%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 570953 570953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold402 SAMTools SNP 575911 575911 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C0%3BMQ%3D45%3BFQ%3D85%3BPV4%3D0.51%2C6.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C211:99 scaffold402 SAMTools SNP 578439 578439 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.014%2C7.8e-07%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold402 SAMTools SNP 582230 582230 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C3.3e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold402 SAMTools SNP 582269 582269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C21%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold402 SAMTools SNP 582560 582560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C33%2C34%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 584437 584437 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold402 SAMTools SNP 584503 584503 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold402 SAMTools SNP 586196 586196 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C59%2C24%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold402 SAMTools SNP 587283 587283 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold402 SAMTools SNP 590033 590033 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C185:85 scaffold402 SAMTools SNP 590417 590417 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C55%2C0%2C7%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.58%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold402 SAMTools SNP 590428 590428 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C0%2C8%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.59%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold402 SAMTools SNP 590863 590863 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.054%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold402 SAMTools SNP 590876 590876 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C217:99 scaffold402 SAMTools SNP 594958 594958 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40208 SAMTools SNP 37705 37705 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold40208 SAMTools SNP 56191 56191 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40208 SAMTools SNP 56215 56215 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40208 SAMTools SNP 62227 62227 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40208 SAMTools SNP 62804 62804 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C5%2C0:9 scaffold40208 SAMTools SNP 69433 69433 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40216 SAMTools SNP 542 542 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40216 SAMTools SNP 578 578 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C37:38 scaffold40216 SAMTools SNP 666 666 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C0.4%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold40216 SAMTools SNP 1088 1088 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40216 SAMTools SNP 1100 1100 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40216 SAMTools SNP 1716 1716 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40216 SAMTools SNP 1728 1728 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40216 SAMTools SNP 42070 42070 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40224 SAMTools SNP 11873 11873 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40224 SAMTools SNP 20612 20612 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold40224 SAMTools SNP 31323 31323 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40224 SAMTools SNP 42098 42098 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C255%2C0:99 scaffold40224 SAMTools SNP 42818 42818 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.53%2C0.076%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold40224 SAMTools SNP 42874 42874 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold40224 SAMTools SNP 44467 44467 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D313%2C39%2C109%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D3.4e-05%2C1%2C1%2C1.5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold40224 SAMTools SNP 44521 44521 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C270%2C159%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 46438 46438 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C20%2C9%2C12%3BMQ%3D50%3BFQ%3D132%3BPV4%3D5.8e-05%2C0.44%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold40224 SAMTools SNP 46696 46696 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C119%2C0%2C42%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0015%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold40224 SAMTools SNP 46703 46703 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C118%2C0%2C42%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold40224 SAMTools SNP 47015 47015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40224 SAMTools SNP 47932 47932 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.00034%2C1.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold40224 SAMTools SNP 47959 47959 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.067%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold40224 SAMTools SNP 47988 47988 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1451%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D797%2C2%2C642%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 48211 48211 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1378%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D599%2C19%2C755%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0007%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 48238 48238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C134%2C3%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-09%2C1%2C1%2C1.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 48250 48250 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1070%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C465%2C4%2C567%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-08%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 48922 48922 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C33%2C4%2C12%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold40224 SAMTools SNP 49003 49003 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.42%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold40224 SAMTools SNP 49334 49334 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C35%2C12%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.09%2C8.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold40224 SAMTools SNP 49433 49433 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C41%2C41%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C1%2C0.14%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 50012 50012 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C44%2C137%2C34%3BMQ%3D49%3BFQ%3D225%3BPV4%3D9.9e-05%2C1%2C0.31%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 51464 51464 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40224 SAMTools SNP 53259 53259 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40224 SAMTools SNP 55279 55279 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C3%2C99%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 55413 55413 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C5%2C138%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 55488 55488 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C101%2C62%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.7e-05%2C2.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 61360 61360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D605%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C196%2C406%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40224 SAMTools SNP 61372 61372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C223%2C110%2C272%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 62950 62950 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C140%2C7%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C5.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40224 SAMTools SNP 63887 63887 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40224 SAMTools SNP 63902 63902 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40224 SAMTools SNP 63903 63903 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold40224 SAMTools SNP 64733 64733 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C21%2C0:39 scaffold40226 SAMTools SNP 3285 3285 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold40226 SAMTools SNP 3890 3890 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C131:99 scaffold40226 SAMTools SNP 3893 3893 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold40226 SAMTools SNP 4731 4731 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 5768 5768 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold40226 SAMTools SNP 5777 5777 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C65:68 scaffold40226 SAMTools SNP 5809 5809 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40226 SAMTools SNP 5810 5810 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.25%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C71:74 scaffold40226 SAMTools SNP 5813 5813 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C181:74 scaffold40226 SAMTools SNP 6221 6221 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold40226 SAMTools SNP 6248 6248 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C13%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.24%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold40226 SAMTools SNP 6269 6269 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold40226 SAMTools SNP 6305 6305 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold40226 SAMTools SNP 6652 6652 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold40226 SAMTools SNP 7027 7027 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40226 SAMTools SNP 7069 7069 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold40226 SAMTools SNP 7298 7298 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.012%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C201:42 scaffold40226 SAMTools SNP 8950 8950 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 8994 8994 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 9851 9851 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40226 SAMTools SNP 9909 9909 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40226 SAMTools SNP 11066 11066 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40226 SAMTools SNP 21262 21262 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D31.5%3BPV4%3D0.4%2C0.095%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C68:61 scaffold40226 SAMTools SNP 34619 34619 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold40226 SAMTools SNP 35576 35576 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 35609 35609 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold40226 SAMTools SNP 35687 35687 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold40226 SAMTools SNP 35744 35744 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40226 SAMTools SNP 37663 37663 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40226 SAMTools SNP 38563 38563 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40226 SAMTools SNP 38585 38585 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40226 SAMTools SNP 38589 38589 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40226 SAMTools SNP 38662 38662 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40226 SAMTools SNP 39094 39094 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40226 SAMTools SNP 39719 39719 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 39745 39745 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold40226 SAMTools SNP 41858 41858 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40226 SAMTools SNP 41866 41866 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold40226 SAMTools SNP 44811 44811 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40226 SAMTools SNP 45668 45668 194 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C8:11 scaffold40226 SAMTools SNP 57077 57077 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C121:99 scaffold40230 SAMTools SNP 958 958 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40230 SAMTools SNP 1002 1002 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40230 SAMTools SNP 1925 1925 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40230 SAMTools SNP 11597 11597 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C3%2C36%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.027%2C2.9e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold40230 SAMTools SNP 11972 11972 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C244:99 scaffold40230 SAMTools SNP 12708 12708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.5e-26%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40230 SAMTools SNP 13205 13205 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C1%2C29%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.49%2C3e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C251:75 scaffold40230 SAMTools SNP 16511 16511 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C223:99 scaffold40230 SAMTools SNP 16527 16527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40230 SAMTools SNP 16539 16539 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold40230 SAMTools SNP 16598 16598 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C8%3BMQ%3D40%3BFQ%3D98%3BPV4%3D0.23%2C1%2C0.0013%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C190:99 scaffold40230 SAMTools SNP 16931 16931 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold40230 SAMTools SNP 19313 19313 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40230 SAMTools SNP 19464 19464 98.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold40230 SAMTools SNP 19491 19491 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40230 SAMTools SNP 19712 19712 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40230 SAMTools SNP 19763 19763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40230 SAMTools SNP 21363 21363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C18%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.65%2C0.16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold40230 SAMTools SNP 22056 22056 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C31%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C156:99 scaffold40230 SAMTools SNP 22095 22095 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold40230 SAMTools SNP 27562 27562 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold40230 SAMTools SNP 29633 29633 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40230 SAMTools SNP 29634 29634 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.048%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40230 SAMTools SNP 31593 31593 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold40230 SAMTools SNP 35224 35224 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C6%2C11%3BMQ%3D41%3BFQ%3D215%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold40230 SAMTools SNP 35245 35245 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C13%2C3%2C11%3BMQ%3D37%3BFQ%3D111%3BPV4%3D0.0004%2C0.12%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold40230 SAMTools SNP 35288 35288 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D42%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40230 SAMTools SNP 38453 38453 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C46%3BMQ%3D1%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C175%2C0:99 scaffold40230 SAMTools SNP 39330 39330 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C231%3BMQ%3D8%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C255%2C0:99 scaffold40230 SAMTools SNP 40027 40027 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C27%2C0:37 scaffold40230 SAMTools SNP 42192 42192 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D1%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C96%2C0:75 scaffold40230 SAMTools SNP 43069 43069 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C219%3BMQ%3D4%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C255%2C0:99 scaffold40230 SAMTools SNP 43684 43684 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C26%2C0%3BMQ%3D29%3BFQ%3D11.3%3BPV4%3D1%2C4.8e-50%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C155:40 scaffold40230 SAMTools SNP 43745 43745 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C22%3BMQ%3D3%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C99%2C0:66 scaffold40230 SAMTools SNP 49041 49041 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C27%2C0:51 scaffold40230 SAMTools SNP 49234 49234 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40230 SAMTools SNP 49248 49248 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40230 SAMTools SNP 49541 49541 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40230 SAMTools SNP 49556 49556 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 50447 50447 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40230 SAMTools SNP 50523 50523 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40230 SAMTools SNP 50727 50727 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold40230 SAMTools SNP 50785 50785 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.42%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold40230 SAMTools SNP 50795 50795 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.58%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40230 SAMTools SNP 54473 54473 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold40230 SAMTools SNP 54542 54542 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40230 SAMTools SNP 54543 54543 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40230 SAMTools SNP 54707 54707 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold40230 SAMTools SNP 54834 54834 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C38:41 scaffold40230 SAMTools SNP 54955 54955 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40230 SAMTools SNP 55295 55295 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D0.18%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C50:40 scaffold40230 SAMTools SNP 55313 55313 49.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.071%2C3.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C8:11 scaffold40230 SAMTools SNP 55478 55478 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40230 SAMTools SNP 55481 55481 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40230 SAMTools SNP 55764 55764 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.47%2C0.049%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C149:28 scaffold40230 SAMTools SNP 55881 55881 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40230 SAMTools SNP 56449 56449 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold40230 SAMTools SNP 56494 56494 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40230 SAMTools SNP 59173 59173 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold40230 SAMTools SNP 59218 59218 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40230 SAMTools SNP 78095 78095 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40230 SAMTools SNP 78219 78219 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold40230 SAMTools SNP 78377 78377 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C23%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C218:99 scaffold40230 SAMTools SNP 78392 78392 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40230 SAMTools SNP 78397 78397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40230 SAMTools SNP 78521 78521 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 79075 79075 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 81176 81176 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 81614 81614 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 81767 81767 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.29%2C0.13%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold40230 SAMTools SNP 81839 81839 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40230 SAMTools SNP 82003 82003 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold40230 SAMTools SNP 82081 82081 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40230 SAMTools SNP 82178 82178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40230 SAMTools SNP 82785 82785 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 11802 11802 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40234 SAMTools SNP 11872 11872 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40234 SAMTools SNP 11884 11884 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 15644 15644 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 19986 19986 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold40234 SAMTools SNP 23695 23695 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40234 SAMTools SNP 24040 24040 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold40234 SAMTools SNP 24089 24089 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold40234 SAMTools SNP 25874 25874 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C13%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold40234 SAMTools SNP 25948 25948 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold40234 SAMTools SNP 25998 25998 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40234 SAMTools SNP 26898 26898 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40234 SAMTools SNP 26932 26932 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold40234 SAMTools SNP 27268 27268 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold40234 SAMTools SNP 27839 27839 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold40234 SAMTools SNP 27929 27929 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold40234 SAMTools SNP 28178 28178 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40234 SAMTools SNP 28192 28192 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40234 SAMTools SNP 29842 29842 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40234 SAMTools SNP 29983 29983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 30010 30010 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold40234 SAMTools SNP 30017 30017 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold40234 SAMTools SNP 30452 30452 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.47%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold40234 SAMTools SNP 30491 30491 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold40234 SAMTools SNP 30500 30500 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40234 SAMTools SNP 30554 30554 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 30555 30555 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 30942 30942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C40%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold40234 SAMTools SNP 31686 31686 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D39%3BFQ%3D67%3BPV4%3D1%2C8.3e-07%2C0.018%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C121:97 scaffold40234 SAMTools SNP 36738 36738 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 36750 36750 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.21%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 37207 37207 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold40234 SAMTools SNP 37213 37213 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.49%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold40234 SAMTools SNP 37223 37223 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.3%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C190:99 scaffold40234 SAMTools SNP 37243 37243 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold40234 SAMTools SNP 38038 38038 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 39061 39061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C41%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40234 SAMTools SNP 39085 39085 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C17%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.032%2C0.48%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold40234 SAMTools SNP 40100 40100 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40234 SAMTools SNP 40131 40131 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40234 SAMTools SNP 40169 40169 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40234 SAMTools SNP 40608 40608 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold40234 SAMTools SNP 40611 40611 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40234 SAMTools SNP 41235 41235 33.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold40234 SAMTools SNP 44565 44565 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold40234 SAMTools SNP 44712 44712 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold40234 SAMTools SNP 44951 44951 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.099%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40234 SAMTools SNP 44970 44970 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0146%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40234 SAMTools SNP 45402 45402 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40234 SAMTools SNP 52583 52583 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold40234 SAMTools SNP 54274 54274 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C50%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 54346 54346 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C2%2C71%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.12%2C1.3e-70%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold40234 SAMTools SNP 54806 54806 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 54823 54823 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 54845 54845 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.32%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 56282 56282 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C32%2C44%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40234 SAMTools SNP 62645 62645 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C14%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold40234 SAMTools SNP 63538 63538 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C19%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.08%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold40234 SAMTools SNP 63578 63578 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C17%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold40234 SAMTools SNP 64106 64106 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 64150 64150 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40234 SAMTools SNP 65218 65218 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold40234 SAMTools SNP 65288 65288 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C122:77 scaffold40234 SAMTools SNP 65308 65308 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C130:74 scaffold40246 SAMTools SNP 7403 7403 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 7478 7478 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 7507 7507 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 7514 7514 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 30213 30213 62.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C6%2C0:10 scaffold40246 SAMTools SNP 36798 36798 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C85%2C41%2C103%3BMQ%3D36%3BFQ%3D225%3BPV4%3D0.69%2C0.12%2C0.14%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40246 SAMTools SNP 37459 37459 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D30%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C93%2C0:99 scaffold40246 SAMTools SNP 37767 37767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C155%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40246 SAMTools SNP 45113 45113 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D22%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C90%2C0:99 scaffold40246 SAMTools SNP 45421 45421 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C93%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C255%2C0:57 scaffold40246 SAMTools SNP 46192 46192 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold40246 SAMTools SNP 46194 46194 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40246 SAMTools SNP 48178 48178 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C33%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C115:76 scaffold40246 SAMTools SNP 48249 48249 47.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold40246 SAMTools SNP 48551 48551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C52%2C58%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40246 SAMTools SNP 48689 48689 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 48723 48723 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 49390 49390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C115%2C153%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40246 SAMTools SNP 49576 49576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C70%2C38%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40246 SAMTools SNP 50205 50205 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C255%2C0:99 scaffold40246 SAMTools SNP 52878 52878 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold40246 SAMTools SNP 60308 60308 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold40246 SAMTools SNP 69602 69602 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40246 SAMTools SNP 69670 69670 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 70568 70568 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40246 SAMTools SNP 70857 70857 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40246 SAMTools SNP 82373 82373 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40246 SAMTools SNP 82541 82541 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold40254 SAMTools SNP 747 747 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 797 797 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 989 989 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40254 SAMTools SNP 992 992 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40254 SAMTools SNP 1915 1915 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40254 SAMTools SNP 1928 1928 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40254 SAMTools SNP 2823 2823 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40254 SAMTools SNP 2841 2841 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40254 SAMTools SNP 11348 11348 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 11570 11570 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40254 SAMTools SNP 11597 11597 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold40254 SAMTools SNP 11705 11705 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold40254 SAMTools SNP 12670 12670 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold40254 SAMTools SNP 12880 12880 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold40254 SAMTools SNP 14651 14651 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40254 SAMTools SNP 14760 14760 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 28058 28058 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C7%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C132%2C0:99 scaffold40254 SAMTools SNP 28154 28154 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold40254 SAMTools SNP 28191 28191 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.23%2C2.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold40254 SAMTools SNP 28264 28264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 28444 28444 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C5.2e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C243:85 scaffold40254 SAMTools SNP 33275 33275 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold40254 SAMTools SNP 33300 33300 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40254 SAMTools SNP 40432 40432 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40254 SAMTools SNP 40728 40728 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0026%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold40254 SAMTools SNP 41248 41248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C4.3e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40254 SAMTools SNP 41532 41532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C42%2C8%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40254 SAMTools SNP 42319 42319 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C75%2C0%2C47%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1.3e-07%2C1e-14%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold40254 SAMTools SNP 42582 42582 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C237%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40254 SAMTools SNP 42780 42780 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C43%2C34%2C11%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00026%2C4.5e-83%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold40254 SAMTools SNP 43708 43708 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C5.2e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold40254 SAMTools SNP 59396 59396 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40254 SAMTools SNP 59430 59430 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40254 SAMTools SNP 60422 60422 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40254 SAMTools SNP 60425 60425 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40254 SAMTools SNP 69743 69743 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 71613 71613 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40254 SAMTools SNP 74702 74702 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 74714 74714 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 74815 74815 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40254 SAMTools SNP 80262 80262 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 80283 80283 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40254 SAMTools SNP 81324 81324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 84224 84224 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 87397 87397 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40254 SAMTools SNP 88288 88288 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C78:43 scaffold40264 SAMTools SNP 1186 1186 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C111:77 scaffold40264 SAMTools SNP 1246 1246 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D43%3BFQ%3D7.8%3BPV4%3D1%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C72:34 scaffold40264 SAMTools SNP 2572 2572 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40264 SAMTools SNP 41474 41474 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40264 SAMTools SNP 41589 41589 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold40264 SAMTools SNP 41676 41676 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40264 SAMTools SNP 43384 43384 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40264 SAMTools SNP 46846 46846 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40264 SAMTools SNP 47020 47020 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40264 SAMTools SNP 47315 47315 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40264 SAMTools SNP 56163 56163 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.075%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold40264 SAMTools SNP 56795 56795 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40264 SAMTools SNP 56796 56796 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40264 SAMTools SNP 59297 59297 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C24%2C76%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D9.9e-05%2C1%2C1%2C1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold40264 SAMTools SNP 59356 59356 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D431%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D177%2C55%2C157%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40264 SAMTools SNP 59494 59494 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C102%2C13%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C7.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40264 SAMTools SNP 62895 62895 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.036%2C0.027%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold40264 SAMTools SNP 63238 63238 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.22%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold40264 SAMTools SNP 63624 63624 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C1%3BMQ%3D49%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C215:99 scaffold40264 SAMTools SNP 63634 63634 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40264 SAMTools SNP 63801 63801 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40264 SAMTools SNP 64465 64465 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40264 SAMTools SNP 64492 64492 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40264 SAMTools SNP 64911 64911 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40264 SAMTools SNP 64932 64932 61.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold40264 SAMTools SNP 65298 65298 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40264 SAMTools SNP 66684 66684 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40264 SAMTools SNP 66956 66956 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.64%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold40264 SAMTools SNP 77300 77300 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40264 SAMTools SNP 84569 84569 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40264 SAMTools SNP 84613 84613 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40264 SAMTools SNP 84914 84914 35.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold40264 SAMTools SNP 85811 85811 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40264 SAMTools SNP 86597 86597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40270 SAMTools SNP 17632 17632 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40270 SAMTools SNP 28940 28940 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D26%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold40270 SAMTools SNP 32551 32551 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C15%2C0:27 scaffold40270 SAMTools SNP 32667 32667 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40270 SAMTools SNP 33076 33076 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold40270 SAMTools SNP 33085 33085 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40270 SAMTools SNP 34344 34344 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40270 SAMTools SNP 35050 35050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40270 SAMTools SNP 37466 37466 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40270 SAMTools SNP 38440 38440 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40270 SAMTools SNP 41299 41299 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40270 SAMTools SNP 44368 44368 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.22%2C4.9e-09%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold40270 SAMTools SNP 44732 44732 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold40270 SAMTools SNP 44735 44735 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40270 SAMTools SNP 44904 44904 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40270 SAMTools SNP 46329 46329 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold40270 SAMTools SNP 46486 46486 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C195:99 scaffold40270 SAMTools SNP 77683 77683 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40270 SAMTools SNP 77699 77699 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40270 SAMTools SNP 77710 77710 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.037%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40270 SAMTools SNP 78290 78290 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40270 SAMTools SNP 78493 78493 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 4148 4148 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold40282 SAMTools SNP 7259 7259 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40282 SAMTools SNP 7288 7288 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 7934 7934 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 7985 7985 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 9415 9415 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40282 SAMTools SNP 9440 9440 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40282 SAMTools SNP 10467 10467 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C252:66 scaffold40282 SAMTools SNP 10566 10566 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40282 SAMTools SNP 13544 13544 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40282 SAMTools SNP 15877 15877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40282 SAMTools SNP 16006 16006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold40282 SAMTools SNP 16680 16680 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold40282 SAMTools SNP 16706 16706 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold40282 SAMTools SNP 16727 16727 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.081%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C247:59 scaffold40282 SAMTools SNP 17348 17348 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold40282 SAMTools SNP 17824 17824 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40282 SAMTools SNP 18469 18469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40282 SAMTools SNP 18481 18481 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40282 SAMTools SNP 26219 26219 30.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold40282 SAMTools SNP 33510 33510 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40282 SAMTools SNP 33822 33822 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40282 SAMTools SNP 33862 33862 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40282 SAMTools SNP 37524 37524 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold40282 SAMTools SNP 37571 37571 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40282 SAMTools SNP 37698 37698 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold40282 SAMTools SNP 38005 38005 83.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C15%2C0:27 scaffold40282 SAMTools SNP 58512 58512 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 58528 58528 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C9%2C0:16 scaffold40282 SAMTools SNP 60433 60433 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40282 SAMTools SNP 60573 60573 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40282 SAMTools SNP 62210 62210 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40282 SAMTools SNP 62306 62306 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40282 SAMTools SNP 62535 62535 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40282 SAMTools SNP 65606 65606 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40282 SAMTools SNP 65682 65682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40282 SAMTools SNP 65848 65848 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40282 SAMTools SNP 65914 65914 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 65928 65928 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold40282 SAMTools SNP 67045 67045 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40282 SAMTools SNP 67171 67171 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40282 SAMTools SNP 68117 68117 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 68396 68396 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00019%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C136:80 scaffold40282 SAMTools SNP 68633 68633 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold40282 SAMTools SNP 68660 68660 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40282 SAMTools SNP 68926 68926 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold40282 SAMTools SNP 69026 69026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40282 SAMTools SNP 69029 69029 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40282 SAMTools SNP 69242 69242 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C30%2C0:57 scaffold40282 SAMTools SNP 69307 69307 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40282 SAMTools SNP 69589 69589 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold40282 SAMTools SNP 69673 69673 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold40282 SAMTools SNP 69798 69798 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40282 SAMTools SNP 70592 70592 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 70793 70793 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40282 SAMTools SNP 70833 70833 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40282 SAMTools SNP 70925 70925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold40282 SAMTools SNP 71081 71081 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40282 SAMTools SNP 71201 71201 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40282 SAMTools SNP 71351 71351 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40290 SAMTools SNP 5792 5792 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40290 SAMTools SNP 7039 7039 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40290 SAMTools SNP 52786 52786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40290 SAMTools SNP 53056 53056 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40290 SAMTools SNP 53079 53079 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40290 SAMTools SNP 53132 53132 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold40290 SAMTools SNP 53318 53318 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40290 SAMTools SNP 55253 55253 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C18%2C0:33 scaffold40290 SAMTools SNP 57521 57521 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40290 SAMTools SNP 58127 58127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40290 SAMTools SNP 62423 62423 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40290 SAMTools SNP 63087 63087 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40290 SAMTools SNP 63088 63088 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40290 SAMTools SNP 63686 63686 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.045%2C7e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40290 SAMTools SNP 64780 64780 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C116:99 scaffold40290 SAMTools SNP 65964 65964 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C26%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.8e-38%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C180:28 scaffold40346 SAMTools SNP 1289 1289 84.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold40346 SAMTools SNP 13327 13327 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40346 SAMTools SNP 13345 13345 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40346 SAMTools SNP 24253 24253 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold40346 SAMTools SNP 24962 24962 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C33%2C0:63 scaffold40346 SAMTools SNP 29492 29492 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.22%2C0.0054%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold40366 SAMTools SNP 37274 37274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40366 SAMTools SNP 37279 37279 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C251:99 scaffold40366 SAMTools SNP 42704 42704 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40368 SAMTools SNP 7250 7250 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40368 SAMTools SNP 7649 7649 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40368 SAMTools SNP 20170 20170 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold40368 SAMTools SNP 20589 20589 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40368 SAMTools SNP 20628 20628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40380 SAMTools SNP 2630 2630 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.013%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C248:53 scaffold40380 SAMTools SNP 2671 2671 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold40380 SAMTools SNP 3830 3830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold40380 SAMTools SNP 3834 3834 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.031%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold40380 SAMTools SNP 3923 3923 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.22%2C0.035%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C191:44 scaffold40380 SAMTools SNP 6726 6726 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold40380 SAMTools SNP 8192 8192 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40380 SAMTools SNP 8213 8213 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.029%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold40380 SAMTools SNP 8245 8245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40380 SAMTools SNP 8818 8818 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40380 SAMTools SNP 8824 8824 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40380 SAMTools SNP 9370 9370 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C74:77 scaffold40380 SAMTools SNP 10034 10034 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold40380 SAMTools SNP 10036 10036 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 10039 10039 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C0.49%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold40380 SAMTools SNP 10077 10077 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold40380 SAMTools SNP 10230 10230 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40380 SAMTools SNP 23874 23874 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40380 SAMTools SNP 38529 38529 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40380 SAMTools SNP 43730 43730 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C68:71 scaffold40380 SAMTools SNP 45608 45608 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D29.9%3BPV4%3D0.22%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C73:60 scaffold40380 SAMTools SNP 46741 46741 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold40380 SAMTools SNP 47320 47320 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold40380 SAMTools SNP 49920 49920 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40380 SAMTools SNP 49959 49959 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40380 SAMTools SNP 50755 50755 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40380 SAMTools SNP 55615 55615 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D903%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C664%2C25%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C0.0056%2C1%2C4.3e-55;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 55636 55636 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1437%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D555%2C639%2C36%2C180%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1.9e-17%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold40380 SAMTools SNP 58018 58018 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40380 SAMTools SNP 58137 58137 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold40380 SAMTools SNP 75829 75829 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold40380 SAMTools SNP 75879 75879 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C63%2C0:99 scaffold40380 SAMTools SNP 77593 77593 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold40380 SAMTools SNP 84875 84875 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C161%2C22%2C128%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.21%2C1%2C0.12%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 84887 84887 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C63%2C41%2C87%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.36%2C0.19%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 84900 84900 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C20%2C16%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.48%2C0.49%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 84918 84918 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40380 SAMTools SNP 84921 84921 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40380 SAMTools SNP 86020 86020 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C41%2C13%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 86043 86043 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C32%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-06%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 86103 86103 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C93%2C8%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D5.7e-05%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold40380 SAMTools SNP 86147 86147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C13%2C27%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-13%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 87583 87583 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40380 SAMTools SNP 87589 87589 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold40380 SAMTools SNP 87601 87601 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C30%2C3%2C10%3BMQ%3D48%3BFQ%3D158%3BPV4%3D0.066%2C0.00047%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold40380 SAMTools SNP 87772 87772 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C48%2C91%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C0.056%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40380 SAMTools SNP 89001 89001 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C194%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40388 SAMTools SNP 3121 3121 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 3182 3182 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold40388 SAMTools SNP 3244 3244 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 3664 3664 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C30%2C0:57 scaffold40388 SAMTools SNP 3736 3736 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold40388 SAMTools SNP 5364 5364 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 11543 11543 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold40388 SAMTools SNP 13407 13407 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C19%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 13434 13434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 15807 15807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C10%2C40%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 15843 15843 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C51%2C6%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 15852 15852 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40388 SAMTools SNP 19160 19160 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C123%2C0:99 scaffold40388 SAMTools SNP 19175 19175 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C59%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold40388 SAMTools SNP 19865 19865 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 27036 27036 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold40388 SAMTools SNP 40283 40283 54.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold40388 SAMTools SNP 44923 44923 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40388 SAMTools SNP 45137 45137 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D5.46%3BPV4%3D0.067%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C60:30 scaffold40388 SAMTools SNP 54234 54234 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C99:99 scaffold40388 SAMTools SNP 66001 66001 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 66276 66276 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold40388 SAMTools SNP 67761 67761 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40388 SAMTools SNP 67764 67764 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold40388 SAMTools SNP 68420 68420 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40388 SAMTools SNP 68451 68451 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40388 SAMTools SNP 68481 68481 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40388 SAMTools SNP 69018 69018 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C21%2C0:39 scaffold40388 SAMTools SNP 69042 69042 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C189:99 scaffold40388 SAMTools SNP 69075 69075 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold40388 SAMTools SNP 69711 69711 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40388 SAMTools SNP 70054 70054 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold40388 SAMTools SNP 70083 70083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40388 SAMTools SNP 70985 70985 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold40388 SAMTools SNP 71525 71525 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40388 SAMTools SNP 71603 71603 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C0.49%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold40388 SAMTools SNP 72174 72174 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40388 SAMTools SNP 72183 72183 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40388 SAMTools SNP 72218 72218 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold40388 SAMTools SNP 72235 72235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C11%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold40388 SAMTools SNP 72553 72553 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40388 SAMTools SNP 72583 72583 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold40388 SAMTools SNP 72586 72586 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40388 SAMTools SNP 72592 72592 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold40388 SAMTools SNP 74719 74719 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40388 SAMTools SNP 75272 75272 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40388 SAMTools SNP 75711 75711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40388 SAMTools SNP 75736 75736 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.16%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold40388 SAMTools SNP 75793 75793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40388 SAMTools SNP 76324 76324 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold40388 SAMTools SNP 76361 76361 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold40388 SAMTools SNP 76394 76394 51.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold40388 SAMTools SNP 78985 78985 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40388 SAMTools SNP 78997 78997 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.12%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold40388 SAMTools SNP 82477 82477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40388 SAMTools SNP 82497 82497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 83348 83348 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40388 SAMTools SNP 85014 85014 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C6:9 scaffold40388 SAMTools SNP 85033 85033 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C30%2C0:57 scaffold40388 SAMTools SNP 85333 85333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40388 SAMTools SNP 85347 85347 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.01%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold40388 SAMTools SNP 85358 85358 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C16%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.0061%2C0.28%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold40388 SAMTools SNP 85616 85616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.35%2C0.12%2C0.18%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40388 SAMTools SNP 86783 86783 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C27%2C0:51 scaffold40388 SAMTools SNP 87252 87252 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C6%3BMQ%3D33%3BFQ%3D86%3BPV4%3D0.71%2C1%2C0.25%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C220:99 scaffold40388 SAMTools SNP 88288 88288 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C6%3BMQ%3D49%3BFQ%3D75%3BPV4%3D0.00038%2C8.6e-06%2C0.082%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40390 SAMTools SNP 1436 1436 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40390 SAMTools SNP 1540 1540 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40390 SAMTools SNP 1637 1637 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40390 SAMTools SNP 1768 1768 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40390 SAMTools SNP 1795 1795 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40390 SAMTools SNP 1818 1818 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40390 SAMTools SNP 2294 2294 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40390 SAMTools SNP 2324 2324 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40390 SAMTools SNP 20138 20138 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.15%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold40390 SAMTools SNP 20844 20844 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold40390 SAMTools SNP 20883 20883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40390 SAMTools SNP 33787 33787 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40390 SAMTools SNP 36283 36283 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40390 SAMTools SNP 36290 36290 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40390 SAMTools SNP 37199 37199 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.047%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40390 SAMTools SNP 37797 37797 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold40390 SAMTools SNP 38978 38978 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40390 SAMTools SNP 38994 38994 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40390 SAMTools SNP 39581 39581 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold40390 SAMTools SNP 39598 39598 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40390 SAMTools SNP 39637 39637 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40390 SAMTools SNP 40413 40413 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold40390 SAMTools SNP 40831 40831 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40390 SAMTools SNP 41121 41121 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold40390 SAMTools SNP 50124 50124 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.11%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C217:99 scaffold40390 SAMTools SNP 50163 50163 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C190:99 scaffold40390 SAMTools SNP 56499 56499 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold40390 SAMTools SNP 56520 56520 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.3%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold40390 SAMTools SNP 57535 57535 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C44%2C69%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1.1e-09%2C9.4e-18%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold40390 SAMTools SNP 57640 57640 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C71%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 57836 57836 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C12%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.2%2C0.13%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold40390 SAMTools SNP 57893 57893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C35%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 58122 58122 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C6%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C8.6e-05%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold40390 SAMTools SNP 58143 58143 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C13%2C59%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0045%2C1e-53%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold40390 SAMTools SNP 58239 58239 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C45%2C29%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 58695 58695 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold40390 SAMTools SNP 67712 67712 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.49%2C0.0097%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold40390 SAMTools SNP 68266 68266 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold40390 SAMTools SNP 68298 68298 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold40390 SAMTools SNP 68303 68303 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40390 SAMTools SNP 76750 76750 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C194%2C194%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C4.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C255%2C0:99 scaffold40390 SAMTools SNP 77240 77240 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40390 SAMTools SNP 77700 77700 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C141%2C34%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40390 SAMTools SNP 78336 78336 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C260%2C0%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 78381 78381 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C350%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40390 SAMTools SNP 78681 78681 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C58%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold40390 SAMTools SNP 78708 78708 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.057%2C1e-26%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40390 SAMTools SNP 78732 78732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold40390 SAMTools SNP 79439 79439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40390 SAMTools SNP 79846 79846 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40390 SAMTools SNP 79876 79876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C46%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold40390 SAMTools SNP 80020 80020 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C2%2C12%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.012%2C0.007%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold40390 SAMTools SNP 80023 80023 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C25%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40390 SAMTools SNP 80311 80311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-07%2C0.16%2C1%2C5.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 80404 80404 13.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold40390 SAMTools SNP 80591 80591 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold40390 SAMTools SNP 80606 80606 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold40390 SAMTools SNP 80809 80809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 80826 80826 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0016%2C8.8e-06%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold40390 SAMTools SNP 81027 81027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C18%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold40390 SAMTools SNP 81216 81216 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40390 SAMTools SNP 81234 81234 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C0%2C51%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold40390 SAMTools SNP 81258 81258 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C34%2C0%2C14%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.0013%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold40390 SAMTools SNP 81375 81375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C33%2C26%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40390 SAMTools SNP 81589 81589 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold40390 SAMTools SNP 81744 81744 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40390 SAMTools SNP 81926 81926 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40390 SAMTools SNP 81932 81932 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40390 SAMTools SNP 82472 82472 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C0.16%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40390 SAMTools SNP 82802 82802 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C11%2C3%3BMQ%3D43%3BFQ%3D219%3BPV4%3D0.52%2C0.07%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold40390 SAMTools SNP 82811 82811 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C20%3BMQ%3D37%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold40390 SAMTools SNP 86960 86960 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold40390 SAMTools SNP 88357 88357 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold40390 SAMTools SNP 89171 89171 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40390 SAMTools SNP 89194 89194 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D48%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold40390 SAMTools SNP 89517 89517 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C0%3BMQ%3D37%3BFQ%3D81%3BPV4%3D0.12%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C164:99 scaffold40390 SAMTools SNP 89532 89532 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C5%3BMQ%3D39%3BFQ%3D120%3BPV4%3D1%2C0.39%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C147:99 scaffold40390 SAMTools SNP 89822 89822 81.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D27%3BFQ%3D-33%3BPV4%3D0.2%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C6%2C0:10 scaffold40396 SAMTools SNP 16375 16375 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40396 SAMTools SNP 17135 17135 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40396 SAMTools SNP 17316 17316 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40396 SAMTools SNP 17341 17341 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40396 SAMTools SNP 17591 17591 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold40396 SAMTools SNP 18057 18057 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40396 SAMTools SNP 18083 18083 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40396 SAMTools SNP 18084 18084 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40396 SAMTools SNP 27106 27106 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40396 SAMTools SNP 27120 27120 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40396 SAMTools SNP 27634 27634 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 75 75 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 160 160 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 164 164 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold404 SAMTools SNP 275 275 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 445 445 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.51%2C2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold404 SAMTools SNP 15103 15103 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C0%2C26%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.25%2C0.032%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold404 SAMTools SNP 15695 15695 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.53%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold404 SAMTools SNP 15731 15731 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold404 SAMTools SNP 15740 15740 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold404 SAMTools SNP 15768 15768 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold404 SAMTools SNP 15994 15994 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.058%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold404 SAMTools SNP 16471 16471 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold404 SAMTools SNP 17309 17309 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C80:75 scaffold404 SAMTools SNP 17318 17318 82.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold404 SAMTools SNP 17331 17331 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold404 SAMTools SNP 17725 17725 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C73:76 scaffold404 SAMTools SNP 17755 17755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.13%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold404 SAMTools SNP 18679 18679 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.46%2C1%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C208:31 scaffold404 SAMTools SNP 18838 18838 150 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C80%2C62%2C185%2C0%2C176:33 scaffold404 SAMTools SNP 18853 18853 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold404 SAMTools SNP 19430 19430 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D37%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C33%2C0:63 scaffold404 SAMTools SNP 19741 19741 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C45%2C0:87 scaffold404 SAMTools SNP 19793 19793 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C180:41 scaffold404 SAMTools SNP 91501 91501 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold404 SAMTools SNP 91522 91522 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.53%2C0.00049%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold404 SAMTools SNP 91595 91595 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C19%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold404 SAMTools SNP 91596 91596 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C19%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold404 SAMTools SNP 93400 93400 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold404 SAMTools SNP 93482 93482 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C29:32 scaffold404 SAMTools SNP 95256 95256 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold404 SAMTools SNP 95283 95283 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold404 SAMTools SNP 98273 98273 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 98274 98274 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 99759 99759 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 100998 100998 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C40%2C42:5 scaffold404 SAMTools SNP 100999 100999 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold404 SAMTools SNP 101006 101006 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.26%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold404 SAMTools SNP 101082 101082 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold404 SAMTools SNP 101597 101597 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold404 SAMTools SNP 102304 102304 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold404 SAMTools SNP 102348 102348 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 106138 106138 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold404 SAMTools SNP 106153 106153 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold404 SAMTools SNP 107147 107147 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold404 SAMTools SNP 107470 107470 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold404 SAMTools SNP 107476 107476 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C190:99 scaffold404 SAMTools SNP 107495 107495 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold404 SAMTools SNP 107725 107725 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D154%3BPV4%3D2e-06%2C1.5e-17%2C1%2C2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C181:99 scaffold404 SAMTools SNP 108506 108506 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold404 SAMTools SNP 109819 109819 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold404 SAMTools SNP 112322 112322 70.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold404 SAMTools SNP 113165 113165 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold404 SAMTools SNP 118954 118954 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold404 SAMTools SNP 119489 119489 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D56.9%3BPV4%3D0.5%2C1e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C102:87 scaffold404 SAMTools SNP 125890 125890 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold404 SAMTools SNP 126851 126851 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold404 SAMTools SNP 128131 128131 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C245:99 scaffold404 SAMTools SNP 128142 128142 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C238:99 scaffold404 SAMTools SNP 128965 128965 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C0%2C9%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.092%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold404 SAMTools SNP 128980 128980 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C1%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.013%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold404 SAMTools SNP 131409 131409 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold404 SAMTools SNP 131815 131815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold404 SAMTools SNP 132410 132410 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold404 SAMTools SNP 132863 132863 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.34%2C5.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold404 SAMTools SNP 132962 132962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold404 SAMTools SNP 133239 133239 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold404 SAMTools SNP 133681 133681 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold404 SAMTools SNP 133710 133710 173 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold404 SAMTools SNP 135189 135189 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C39%2C41%2C51%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1.2e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold404 SAMTools SNP 135522 135522 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold404 SAMTools SNP 135889 135889 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C63%2C0:99 scaffold404 SAMTools SNP 176569 176569 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold404 SAMTools SNP 227975 227975 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 228547 228547 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 228649 228649 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 229003 229003 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 235458 235458 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 235467 235467 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold404 SAMTools SNP 243893 243893 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold404 SAMTools SNP 271329 271329 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold404 SAMTools SNP 276546 276546 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold404 SAMTools SNP 276558 276558 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.021%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C138:64 scaffold404 SAMTools SNP 276570 276570 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.11%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C208:52 scaffold404 SAMTools SNP 276573 276573 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.11%2C0.065%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C208:50 scaffold404 SAMTools SNP 277931 277931 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold404 SAMTools SNP 277949 277949 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold404 SAMTools SNP 311467 311467 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold404 SAMTools SNP 325192 325192 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C32:35 scaffold404 SAMTools SNP 339810 339810 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 341354 341354 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.45%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C44:47 scaffold404 SAMTools SNP 341637 341637 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold404 SAMTools SNP 344789 344789 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold404 SAMTools SNP 345176 345176 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold404 SAMTools SNP 348867 348867 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C63%2C0:99 scaffold404 SAMTools SNP 349072 349072 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold404 SAMTools SNP 349270 349270 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C12%2C0:21 scaffold404 SAMTools SNP 349504 349504 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold404 SAMTools SNP 359111 359111 49.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold40404 SAMTools SNP 4184 4184 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40404 SAMTools SNP 4320 4320 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40404 SAMTools SNP 14561 14561 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold40404 SAMTools SNP 23801 23801 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold40404 SAMTools SNP 38992 38992 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40404 SAMTools SNP 42841 42841 3.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold40404 SAMTools SNP 44059 44059 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold40404 SAMTools SNP 44776 44776 62.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C15%2C9%2C93%2C0%2C90:10 scaffold40404 SAMTools SNP 45000 45000 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C81%2C0:99 scaffold40404 SAMTools SNP 45016 45016 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold40404 SAMTools SNP 46144 46144 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.41%2C1.8e-13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40404 SAMTools SNP 46194 46194 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C29%2C10%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1.1e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold40404 SAMTools SNP 59670 59670 17.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold40404 SAMTools SNP 62410 62410 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40404 SAMTools SNP 62835 62835 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40404 SAMTools SNP 62953 62953 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C66%2C0:99 scaffold40404 SAMTools SNP 63178 63178 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C14:17 scaffold40404 SAMTools SNP 66390 66390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40404 SAMTools SNP 66459 66459 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40404 SAMTools SNP 66510 66510 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40404 SAMTools SNP 66523 66523 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40404 SAMTools SNP 66934 66934 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40404 SAMTools SNP 67649 67649 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40404 SAMTools SNP 79008 79008 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold40406 SAMTools SNP 14931 14931 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40406 SAMTools SNP 14947 14947 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40406 SAMTools SNP 15188 15188 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40406 SAMTools SNP 41294 41294 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold40406 SAMTools SNP 41384 41384 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold40406 SAMTools SNP 43447 43447 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40406 SAMTools SNP 80620 80620 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40406 SAMTools SNP 82338 82338 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40406 SAMTools SNP 82368 82368 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40412 SAMTools SNP 2889 2889 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40412 SAMTools SNP 5344 5344 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold40412 SAMTools SNP 11836 11836 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40412 SAMTools SNP 15489 15489 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40412 SAMTools SNP 15490 15490 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40412 SAMTools SNP 43785 43785 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40412 SAMTools SNP 50810 50810 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold40412 SAMTools SNP 58674 58674 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold40412 SAMTools SNP 58746 58746 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40412 SAMTools SNP 75428 75428 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40412 SAMTools SNP 80727 80727 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.49%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold40412 SAMTools SNP 80752 80752 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C231:99 scaffold40412 SAMTools SNP 81407 81407 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold40412 SAMTools SNP 83318 83318 58.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold40412 SAMTools SNP 83842 83842 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40412 SAMTools SNP 85928 85928 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 55 55 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40420 SAMTools SNP 79 79 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40420 SAMTools SNP 3050 3050 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40420 SAMTools SNP 3053 3053 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40420 SAMTools SNP 3664 3664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C64%2C14%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 3868 3868 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C16%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 4439 4439 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C20%2C77%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 4497 4497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C97%2C3%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.46%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 4980 4980 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C25%2C53%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 5313 5313 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D96%3BPV4%3D5e-08%2C1%2C1%2C2.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold40420 SAMTools SNP 5322 5322 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C53%2C0%2C39%3BMQ%3D50%3BFQ%3D137%3BPV4%3D5.5e-10%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold40420 SAMTools SNP 5709 5709 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C55%2C17%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00024%2C1%2C1%2C3.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold40420 SAMTools SNP 5739 5739 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C59%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 6068 6068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C27%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-05%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 6108 6108 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-06%2C1.9e-06%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 6774 6774 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 7077 7077 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.5%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 7395 7395 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.42%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold40420 SAMTools SNP 7407 7407 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.28%2C1%2C6.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C243:99 scaffold40420 SAMTools SNP 7455 7455 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold40420 SAMTools SNP 7795 7795 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C1%2C13%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold40420 SAMTools SNP 7840 7840 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40420 SAMTools SNP 8542 8542 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40420 SAMTools SNP 8544 8544 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40420 SAMTools SNP 8708 8708 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.0031%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold40420 SAMTools SNP 8748 8748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C11%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold40420 SAMTools SNP 10030 10030 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C2%2C21%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40420 SAMTools SNP 10069 10069 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40420 SAMTools SNP 10325 10325 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C45%2C0%2C37%3BMQ%3D50%3BFQ%3D170%3BPV4%3D2.6e-06%2C7.6e-05%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold40420 SAMTools SNP 10359 10359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C99%2C29%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C2e-41%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40420 SAMTools SNP 23810 23810 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40420 SAMTools SNP 23813 23813 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40420 SAMTools SNP 23885 23885 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40420 SAMTools SNP 25853 25853 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40420 SAMTools SNP 29589 29589 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40420 SAMTools SNP 29997 29997 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40420 SAMTools SNP 30206 30206 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold40420 SAMTools SNP 30235 30235 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.12%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold40420 SAMTools SNP 30501 30501 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40420 SAMTools SNP 30522 30522 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.036%2C0.019%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C170:39 scaffold40420 SAMTools SNP 30548 30548 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold40420 SAMTools SNP 30559 30559 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40420 SAMTools SNP 30600 30600 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold40420 SAMTools SNP 30852 30852 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold40420 SAMTools SNP 31068 31068 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40420 SAMTools SNP 34467 34467 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C24%2C0:45 scaffold40420 SAMTools SNP 36186 36186 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40420 SAMTools SNP 36193 36193 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold40420 SAMTools SNP 36207 36207 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold40420 SAMTools SNP 37873 37873 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40420 SAMTools SNP 37885 37885 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold40420 SAMTools SNP 38716 38716 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C246:99 scaffold40420 SAMTools SNP 38751 38751 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold40420 SAMTools SNP 39013 39013 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold40420 SAMTools SNP 40305 40305 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold40420 SAMTools SNP 40335 40335 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold40420 SAMTools SNP 40831 40831 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold40420 SAMTools SNP 42548 42548 4.11 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold40420 SAMTools SNP 43186 43186 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40420 SAMTools SNP 47980 47980 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.051%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold40420 SAMTools SNP 49434 49434 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold40420 SAMTools SNP 53712 53712 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.56%2C0.0006%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold40420 SAMTools SNP 53713 53713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold40420 SAMTools SNP 54591 54591 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40420 SAMTools SNP 55052 55052 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40420 SAMTools SNP 55073 55073 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold40420 SAMTools SNP 55279 55279 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold40420 SAMTools SNP 88793 88793 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold40420 SAMTools SNP 88912 88912 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold40420 SAMTools SNP 89524 89524 89.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold40424 SAMTools SNP 26302 26302 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40424 SAMTools SNP 26337 26337 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40424 SAMTools SNP 26439 26439 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold40424 SAMTools SNP 26897 26897 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.43%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C107:64 scaffold40424 SAMTools SNP 27512 27512 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C193:31 scaffold40424 SAMTools SNP 27539 27539 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.49%2C0.028%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C121:69 scaffold40424 SAMTools SNP 30511 30511 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40424 SAMTools SNP 36967 36967 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40424 SAMTools SNP 37247 37247 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40424 SAMTools SNP 37248 37248 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold40424 SAMTools SNP 38561 38561 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold40424 SAMTools SNP 38855 38855 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40424 SAMTools SNP 44468 44468 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40424 SAMTools SNP 44477 44477 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40424 SAMTools SNP 44482 44482 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40424 SAMTools SNP 45236 45236 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C24%2C0:45 scaffold40424 SAMTools SNP 47883 47883 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40438 SAMTools SNP 54261 54261 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold40438 SAMTools SNP 80740 80740 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.07%2C0.0077%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40438 SAMTools SNP 80751 80751 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.061%2C0.00025%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C248:69 scaffold40440 SAMTools SNP 16477 16477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 17137 17137 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40440 SAMTools SNP 17388 17388 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold40440 SAMTools SNP 17624 17624 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 17642 17642 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40440 SAMTools SNP 17902 17902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40440 SAMTools SNP 18186 18186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40440 SAMTools SNP 18416 18416 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold40440 SAMTools SNP 18473 18473 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold40440 SAMTools SNP 18497 18497 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold40440 SAMTools SNP 18505 18505 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.22%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold40440 SAMTools SNP 18700 18700 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40440 SAMTools SNP 18838 18838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold40440 SAMTools SNP 19345 19345 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0081%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C193:42 scaffold40440 SAMTools SNP 20301 20301 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40440 SAMTools SNP 23753 23753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold40440 SAMTools SNP 23813 23813 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40440 SAMTools SNP 24162 24162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40440 SAMTools SNP 24532 24532 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40440 SAMTools SNP 24544 24544 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40440 SAMTools SNP 24792 24792 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 24798 24798 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 25219 25219 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold40440 SAMTools SNP 25222 25222 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold40440 SAMTools SNP 25264 25264 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40440 SAMTools SNP 27663 27663 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.37%2C1%2C6.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold40440 SAMTools SNP 27716 27716 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C80%2C1%3BMQ%3D48%3BFQ%3D172%3BPV4%3D0.0024%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C199:99 scaffold40440 SAMTools SNP 28041 28041 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C89%2C1%2C17%3BMQ%3D48%3BFQ%3D59%3BPV4%3D0.17%2C8.1e-07%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C200:89 scaffold40440 SAMTools SNP 28104 28104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40440 SAMTools SNP 28502 28502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40440 SAMTools SNP 28514 28514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40440 SAMTools SNP 29547 29547 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold40440 SAMTools SNP 30185 30185 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold40440 SAMTools SNP 30218 30218 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C127:99 scaffold40440 SAMTools SNP 30883 30883 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold40440 SAMTools SNP 31133 31133 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40440 SAMTools SNP 31232 31232 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.018%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C237:99 scaffold40440 SAMTools SNP 31367 31367 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C238:99 scaffold40440 SAMTools SNP 31421 31421 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40440 SAMTools SNP 31970 31970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C12%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40440 SAMTools SNP 38862 38862 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40440 SAMTools SNP 48617 48617 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 56838 56838 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40440 SAMTools SNP 56867 56867 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold40440 SAMTools SNP 56939 56939 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40440 SAMTools SNP 57319 57319 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40440 SAMTools SNP 58704 58704 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold40440 SAMTools SNP 81178 81178 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 81187 81187 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 81645 81645 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40440 SAMTools SNP 82672 82672 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40440 SAMTools SNP 82701 82701 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40440 SAMTools SNP 83486 83486 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40440 SAMTools SNP 84821 84821 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 90670 90670 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 90724 90724 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40440 SAMTools SNP 91123 91123 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40442 SAMTools SNP 2280 2280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40442 SAMTools SNP 2385 2385 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40442 SAMTools SNP 4033 4033 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C75%2C0:99 scaffold40442 SAMTools SNP 4265 4265 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C30%2C0:57 scaffold40442 SAMTools SNP 4603 4603 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold40442 SAMTools SNP 4615 4615 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold40442 SAMTools SNP 5166 5166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 5667 5667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold40442 SAMTools SNP 5691 5691 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D45%3BFQ%3D102%3BPV4%3D1%2C0.3%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C129:99 scaffold40442 SAMTools SNP 5908 5908 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D46%3BFQ%3D68%3BPV4%3D1%2C0.41%2C0.28%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C198:98 scaffold40442 SAMTools SNP 11050 11050 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold40442 SAMTools SNP 11239 11239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C12%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold40442 SAMTools SNP 11723 11723 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold40442 SAMTools SNP 12168 12168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40442 SAMTools SNP 12181 12181 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40442 SAMTools SNP 14635 14635 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold40442 SAMTools SNP 14808 14808 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold40442 SAMTools SNP 19181 19181 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 19312 19312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40442 SAMTools SNP 20037 20037 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 20077 20077 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.033%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 20340 20340 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C12%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold40442 SAMTools SNP 21195 21195 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.051%2C5.2e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold40442 SAMTools SNP 21460 21460 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40442 SAMTools SNP 22141 22141 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40442 SAMTools SNP 22159 22159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40442 SAMTools SNP 23545 23545 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C0.35%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C217:99 scaffold40442 SAMTools SNP 23587 23587 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold40442 SAMTools SNP 26596 26596 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40442 SAMTools SNP 27476 27476 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.47%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C198:99 scaffold40442 SAMTools SNP 27974 27974 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40442 SAMTools SNP 28121 28121 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold40442 SAMTools SNP 28178 28178 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold40442 SAMTools SNP 28247 28247 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.44%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C193:49 scaffold40442 SAMTools SNP 43134 43134 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C12%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C2.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 43155 43155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C39%2C46%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 43614 43614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C44%2C66%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 43641 43641 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C8%2C81%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 43968 43968 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C18%2C55%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.018%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 44086 44086 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 44431 44431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold40442 SAMTools SNP 44631 44631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.22%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 44716 44716 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C13%2C26%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0079%2C3.5e-13%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40442 SAMTools SNP 44797 44797 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C103%2C0%2C37%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold40442 SAMTools SNP 44949 44949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40442 SAMTools SNP 44967 44967 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold40442 SAMTools SNP 45075 45075 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold40442 SAMTools SNP 45358 45358 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 45523 45523 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold40442 SAMTools SNP 45640 45640 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.14%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C218:99 scaffold40442 SAMTools SNP 45646 45646 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold40442 SAMTools SNP 45652 45652 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.51%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold40442 SAMTools SNP 45825 45825 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold40442 SAMTools SNP 45852 45852 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40442 SAMTools SNP 46138 46138 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold40442 SAMTools SNP 46422 46422 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 46665 46665 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C58%2C285%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.00092%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 46722 46722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C187%2C60%2C241%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 46953 46953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40442 SAMTools SNP 46998 46998 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C85%2C112%2C65%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.14%2C1.4e-255%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold40442 SAMTools SNP 47182 47182 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D212%2C74%2C65%2C63%3BMQ%3D50%3BFQ%3D71%3BPV4%3D5.2e-06%2C1.4e-80%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold40442 SAMTools SNP 47402 47402 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C188%2C9%2C57%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.35%2C0.023%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold40442 SAMTools SNP 47474 47474 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C64%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-10%2C3.5e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 47558 47558 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.22%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold40442 SAMTools SNP 47714 47714 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0013%2C1.5e-17%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold40442 SAMTools SNP 47887 47887 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C6%2C138%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 48305 48305 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C306%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40442 SAMTools SNP 51710 51710 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold40442 SAMTools SNP 52925 52925 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C240:99 scaffold40442 SAMTools SNP 52943 52943 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold40442 SAMTools SNP 54163 54163 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold40442 SAMTools SNP 54361 54361 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 55461 55461 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.23%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold40442 SAMTools SNP 55715 55715 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40442 SAMTools SNP 55780 55780 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0034%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C229:99 scaffold40442 SAMTools SNP 57847 57847 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0065%2C0.26%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold40442 SAMTools SNP 57885 57885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40442 SAMTools SNP 60928 60928 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold40442 SAMTools SNP 60982 60982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40442 SAMTools SNP 61229 61229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40442 SAMTools SNP 61469 61469 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40442 SAMTools SNP 61470 61470 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40442 SAMTools SNP 61761 61761 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D0.085%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold40442 SAMTools SNP 61975 61975 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C58%2C21%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40442 SAMTools SNP 62401 62401 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40442 SAMTools SNP 62869 62869 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold40442 SAMTools SNP 63486 63486 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C69%2C0:99 scaffold40442 SAMTools SNP 77253 77253 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40442 SAMTools SNP 77272 77272 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40442 SAMTools SNP 77302 77302 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 1752 1752 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 1765 1765 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 14147 14147 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40454 SAMTools SNP 14175 14175 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40454 SAMTools SNP 37296 37296 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40454 SAMTools SNP 40601 40601 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40454 SAMTools SNP 40615 40615 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40454 SAMTools SNP 40862 40862 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40454 SAMTools SNP 43672 43672 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 43760 43760 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 43954 43954 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40454 SAMTools SNP 44187 44187 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40454 SAMTools SNP 44330 44330 18 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold40454 SAMTools SNP 48597 48597 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40454 SAMTools SNP 49154 49154 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40456 SAMTools SNP 886 886 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.062%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold40456 SAMTools SNP 12918 12918 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.3e-37%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C203:51 scaffold40456 SAMTools SNP 13680 13680 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.035%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C183:99 scaffold40456 SAMTools SNP 13690 13690 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C239:99 scaffold40456 SAMTools SNP 18672 18672 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40456 SAMTools SNP 29990 29990 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40456 SAMTools SNP 35157 35157 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40456 SAMTools SNP 35178 35178 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40456 SAMTools SNP 35195 35195 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40456 SAMTools SNP 35275 35275 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40456 SAMTools SNP 37886 37886 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40456 SAMTools SNP 39040 39040 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40456 SAMTools SNP 39078 39078 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40456 SAMTools SNP 39574 39574 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold40456 SAMTools SNP 39595 39595 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold40456 SAMTools SNP 42104 42104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40456 SAMTools SNP 42115 42115 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.02%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C236:99 scaffold40456 SAMTools SNP 42136 42136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40456 SAMTools SNP 42331 42331 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40456 SAMTools SNP 42908 42908 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C26%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C239:99 scaffold40456 SAMTools SNP 43631 43631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C47%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold40456 SAMTools SNP 43688 43688 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold40456 SAMTools SNP 43730 43730 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40456 SAMTools SNP 43745 43745 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold40456 SAMTools SNP 44639 44639 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold40456 SAMTools SNP 46537 46537 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40456 SAMTools SNP 46594 46594 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.17%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C154:84 scaffold40456 SAMTools SNP 47156 47156 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40456 SAMTools SNP 47600 47600 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold40456 SAMTools SNP 53441 53441 95.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold40456 SAMTools SNP 54647 54647 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40456 SAMTools SNP 63763 63763 29.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold40456 SAMTools SNP 64510 64510 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold40456 SAMTools SNP 66917 66917 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40456 SAMTools SNP 71330 71330 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C182%2C11%2C57%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0032%2C4.8e-14%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40456 SAMTools SNP 71925 71925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D653%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C147%2C130%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40456 SAMTools SNP 73343 73343 12 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C16%2C10%2C41%2C0%2C38:9 scaffold40456 SAMTools SNP 73372 73372 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40456 SAMTools SNP 73444 73444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C61%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold40456 SAMTools SNP 73981 73981 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C24%2C0:45 scaffold40456 SAMTools SNP 74140 74140 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40456 SAMTools SNP 74575 74575 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.085%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold40456 SAMTools SNP 75004 75004 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold40456 SAMTools SNP 76254 76254 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold40456 SAMTools SNP 76260 76260 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40456 SAMTools SNP 78081 78081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C6%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold40456 SAMTools SNP 78129 78129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D885%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C850%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40456 SAMTools SNP 80183 80183 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1435%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C606%2C65%2C587%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40456 SAMTools SNP 80626 80626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C218%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40456 SAMTools SNP 80631 80631 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C32%2C84%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40456 SAMTools SNP 81351 81351 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C70%2C4%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40476 SAMTools SNP 4086 4086 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C0%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C5.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold40476 SAMTools SNP 4240 4240 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold40476 SAMTools SNP 6367 6367 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40476 SAMTools SNP 6379 6379 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C33%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold40476 SAMTools SNP 7117 7117 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold40476 SAMTools SNP 8765 8765 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold40476 SAMTools SNP 8823 8823 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40476 SAMTools SNP 9131 9131 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D40%3BFQ%3D4.13%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C29:32 scaffold40476 SAMTools SNP 10489 10489 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C54%2C0:99 scaffold40476 SAMTools SNP 10577 10577 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0146%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D0.091%2C2.6e-09%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40476 SAMTools SNP 54628 54628 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40476 SAMTools SNP 87745 87745 16.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold40492 SAMTools SNP 1070 1070 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40492 SAMTools SNP 6240 6240 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold40492 SAMTools SNP 7789 7789 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.23%2C1%2C9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40492 SAMTools SNP 9459 9459 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold40492 SAMTools SNP 25873 25873 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 6712 6712 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 6740 6740 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 6784 6784 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40512 SAMTools SNP 6825 6825 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 24965 24965 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 25141 25141 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 26731 26731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 26770 26770 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold40512 SAMTools SNP 32940 32940 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40512 SAMTools SNP 33267 33267 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.42%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C73:76 scaffold40512 SAMTools SNP 33445 33445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold40512 SAMTools SNP 33484 33484 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40512 SAMTools SNP 34314 34314 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40512 SAMTools SNP 34385 34385 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40512 SAMTools SNP 37746 37746 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold40512 SAMTools SNP 37782 37782 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold40512 SAMTools SNP 38057 38057 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40512 SAMTools SNP 40074 40074 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40512 SAMTools SNP 40080 40080 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40512 SAMTools SNP 40170 40170 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40512 SAMTools SNP 40177 40177 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40512 SAMTools SNP 54066 54066 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C108%2C0:99 scaffold40514 SAMTools SNP 27939 27939 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40514 SAMTools SNP 28296 28296 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40514 SAMTools SNP 33548 33548 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 34018 34018 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 34164 34164 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C4%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold40514 SAMTools SNP 34173 34173 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C0.19%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C246:99 scaffold40514 SAMTools SNP 34239 34239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40514 SAMTools SNP 35124 35124 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40514 SAMTools SNP 35157 35157 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C4%2C2%3BMQ%3D49%3BFQ%3D104%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold40514 SAMTools SNP 35208 35208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold40514 SAMTools SNP 36500 36500 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D48%3BFQ%3D67%3BPV4%3D1%2C1%2C0.26%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C94:97 scaffold40514 SAMTools SNP 36863 36863 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40514 SAMTools SNP 36878 36878 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40514 SAMTools SNP 36957 36957 59.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold40514 SAMTools SNP 36958 36958 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold40514 SAMTools SNP 40938 40938 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C24%2C0:45 scaffold40514 SAMTools SNP 40955 40955 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold40514 SAMTools SNP 43941 43941 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40514 SAMTools SNP 43953 43953 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40514 SAMTools SNP 44046 44046 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40514 SAMTools SNP 44691 44691 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C36%2C0:69 scaffold40514 SAMTools SNP 44761 44761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold40514 SAMTools SNP 52748 52748 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold40514 SAMTools SNP 52819 52819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40514 SAMTools SNP 54374 54374 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold40514 SAMTools SNP 54462 54462 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.033%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold40514 SAMTools SNP 54512 54512 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40514 SAMTools SNP 56071 56071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40514 SAMTools SNP 56098 56098 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold40514 SAMTools SNP 56143 56143 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0097%2C0.033%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold40514 SAMTools SNP 56472 56472 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 56479 56479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 56778 56778 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C1%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-08%2C0.3%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 56847 56847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 56856 56856 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold40514 SAMTools SNP 57084 57084 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.016%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold40514 SAMTools SNP 57357 57357 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold40514 SAMTools SNP 57362 57362 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D75.2%3BPV4%3D0.4%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C110:99 scaffold40514 SAMTools SNP 57368 57368 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold40514 SAMTools SNP 58095 58095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C7%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold40514 SAMTools SNP 58157 58157 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40514 SAMTools SNP 58185 58185 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C29%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold40514 SAMTools SNP 59017 59017 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C3.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold40514 SAMTools SNP 59080 59080 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.01%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40514 SAMTools SNP 60063 60063 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C13%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold40514 SAMTools SNP 60081 60081 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C183:99 scaffold40514 SAMTools SNP 60138 60138 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold40514 SAMTools SNP 60501 60501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C46%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 61248 61248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C20%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-06%2C0.001%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 61252 61252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C20%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-06%2C0.032%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 61257 61257 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C45%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40514 SAMTools SNP 67092 67092 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold40526 SAMTools SNP 786 786 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40526 SAMTools SNP 24668 24668 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.4%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold40526 SAMTools SNP 30378 30378 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold40526 SAMTools SNP 74950 74950 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold40526 SAMTools SNP 78711 78711 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold40526 SAMTools SNP 79824 79824 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C11%3BMQ%3D40%3BFQ%3D-50%3BPV4%3D0.27%2C1.3e-12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C23%2C0:43 scaffold40526 SAMTools SNP 87668 87668 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C75%2C56%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40526 SAMTools SNP 91436 91436 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40534 SAMTools SNP 276 276 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 1391 1391 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C3.3e-15%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold40534 SAMTools SNP 2153 2153 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold40534 SAMTools SNP 2420 2420 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold40534 SAMTools SNP 2492 2492 9.49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold40534 SAMTools SNP 6861 6861 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold40534 SAMTools SNP 7203 7203 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40534 SAMTools SNP 7209 7209 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold40534 SAMTools SNP 8348 8348 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40534 SAMTools SNP 10469 10469 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold40534 SAMTools SNP 10846 10846 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C7.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40534 SAMTools SNP 12356 12356 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40534 SAMTools SNP 12359 12359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold40534 SAMTools SNP 12386 12386 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold40534 SAMTools SNP 12395 12395 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40534 SAMTools SNP 12640 12640 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C236:99 scaffold40534 SAMTools SNP 12738 12738 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 15289 15289 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold40534 SAMTools SNP 17026 17026 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 17092 17092 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40534 SAMTools SNP 23416 23416 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold40534 SAMTools SNP 32590 32590 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40534 SAMTools SNP 33877 33877 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C69:40 scaffold40534 SAMTools SNP 34205 34205 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.24%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C233:87 scaffold40534 SAMTools SNP 42639 42639 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 42675 42675 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40534 SAMTools SNP 43098 43098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 47980 47980 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40534 SAMTools SNP 53160 53160 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40534 SAMTools SNP 55104 55104 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold40534 SAMTools SNP 55965 55965 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40534 SAMTools SNP 57594 57594 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold40534 SAMTools SNP 60323 60323 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold40534 SAMTools SNP 62458 62458 12.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C5%2C0:8 scaffold40534 SAMTools SNP 72323 72323 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C3%2C16%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.084%2C1.8e-38%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C248:51 scaffold40534 SAMTools SNP 75667 75667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40534 SAMTools SNP 77935 77935 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C15%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C3.9e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold40534 SAMTools SNP 78709 78709 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C54%2C0:99 scaffold40534 SAMTools SNP 78859 78859 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C7%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.52%2C3.9e-34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40534 SAMTools SNP 80482 80482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40534 SAMTools SNP 82415 82415 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C17%3BMQ%3D49%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C246:99 scaffold40534 SAMTools SNP 86339 86339 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold40534 SAMTools SNP 86362 86362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40534 SAMTools SNP 86405 86405 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40534 SAMTools SNP 89920 89920 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C45%2C0:87 scaffold40534 SAMTools SNP 90850 90850 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40548 SAMTools SNP 6427 6427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 11662 11662 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 12609 12609 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40548 SAMTools SNP 12621 12621 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold40548 SAMTools SNP 12808 12808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 12823 12823 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40548 SAMTools SNP 12850 12850 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40548 SAMTools SNP 15561 15561 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40548 SAMTools SNP 19545 19545 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C36%2C0:68 scaffold40548 SAMTools SNP 20495 20495 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 21785 21785 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C235:99 scaffold40548 SAMTools SNP 22313 22313 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C0.29%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 22331 22331 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C32%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold40548 SAMTools SNP 22415 22415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold40548 SAMTools SNP 22652 22652 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold40548 SAMTools SNP 25496 25496 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40548 SAMTools SNP 25535 25535 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold40548 SAMTools SNP 25817 25817 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.031%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 26412 26412 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40548 SAMTools SNP 26482 26482 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.24%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40548 SAMTools SNP 26952 26952 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.026%2C0.00052%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold40548 SAMTools SNP 27384 27384 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C1%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.8e-06%2C1%2C2.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold40548 SAMTools SNP 27695 27695 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C13%2C42%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.68%2C0.22%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold40548 SAMTools SNP 27704 27704 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C1%2C9%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.44%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold40548 SAMTools SNP 27730 27730 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C13%2C16%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.064%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold40548 SAMTools SNP 28945 28945 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40548 SAMTools SNP 28978 28978 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold40548 SAMTools SNP 29301 29301 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40548 SAMTools SNP 29438 29438 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 60773 60773 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold40548 SAMTools SNP 62002 62002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 63977 63977 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold40548 SAMTools SNP 68314 68314 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C82%2C77%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 70032 70032 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C55%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold40548 SAMTools SNP 71448 71448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C91%2C1%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 71469 71469 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40548 SAMTools SNP 71529 71529 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C92:28 scaffold40548 SAMTools SNP 74554 74554 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.6e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C138:37 scaffold40548 SAMTools SNP 74596 74596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40548 SAMTools SNP 74605 74605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40548 SAMTools SNP 75100 75100 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40548 SAMTools SNP 75204 75204 47.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold40548 SAMTools SNP 75454 75454 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40548 SAMTools SNP 75460 75460 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40548 SAMTools SNP 76626 76626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40548 SAMTools SNP 77241 77241 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.11%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold40548 SAMTools SNP 77343 77343 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold40548 SAMTools SNP 77363 77363 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40548 SAMTools SNP 77664 77664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40548 SAMTools SNP 78162 78162 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40548 SAMTools SNP 78310 78310 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40548 SAMTools SNP 78541 78541 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40548 SAMTools SNP 78681 78681 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold40548 SAMTools SNP 79171 79171 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40548 SAMTools SNP 79416 79416 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40548 SAMTools SNP 79941 79941 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.2%2C0.43%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold40548 SAMTools SNP 82911 82911 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.0051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold40548 SAMTools SNP 82929 82929 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold40548 SAMTools SNP 85989 85989 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C224%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40548 SAMTools SNP 86809 86809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C342%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40548 SAMTools SNP 86901 86901 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C80%2C26%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-08%2C0.00044%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 88154 88154 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40548 SAMTools SNP 88169 88169 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40548 SAMTools SNP 88223 88223 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40548 SAMTools SNP 88991 88991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C40%2C14%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-06%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 89015 89015 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C23%2C35%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-05%2C6.5e-05%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 89057 89057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 89069 89069 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C39%2C17%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1.7e-11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 89072 89072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C26%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40548 SAMTools SNP 89717 89717 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C52%2C2%2C20%3BMQ%3D49%3BFQ%3D103%3BPV4%3D0.0026%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold40548 SAMTools SNP 91029 91029 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C87%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40548 SAMTools SNP 91681 91681 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C188%2C50%2C189%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.91%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40556 SAMTools SNP 9452 9452 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 9504 9504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 9597 9597 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold40556 SAMTools SNP 9611 9611 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold40556 SAMTools SNP 10076 10076 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 10642 10642 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold40556 SAMTools SNP 10707 10707 10.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold40556 SAMTools SNP 16075 16075 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 25141 25141 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40556 SAMTools SNP 25928 25928 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 25931 25931 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40556 SAMTools SNP 25985 25985 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40556 SAMTools SNP 30518 30518 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold40556 SAMTools SNP 38425 38425 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C13%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C154%2C0:99 scaffold40556 SAMTools SNP 38570 38570 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold40556 SAMTools SNP 38819 38819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C36%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold40556 SAMTools SNP 39026 39026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C110%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40556 SAMTools SNP 39103 39103 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0429%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C62%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D8.5e-05%2C1%2C1%2C2.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold40556 SAMTools SNP 41472 41472 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40560 SAMTools SNP 46052 46052 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40560 SAMTools SNP 46340 46340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40560 SAMTools SNP 69142 69142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C200%2C75%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C7.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40560 SAMTools SNP 69892 69892 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold40560 SAMTools SNP 69903 69903 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C107%2C66%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40560 SAMTools SNP 70958 70958 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C278%2C222%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40560 SAMTools SNP 70976 70976 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C260%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40560 SAMTools SNP 71664 71664 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C219%2C1%2C105%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold40564 SAMTools SNP 12731 12731 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40564 SAMTools SNP 22814 22814 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40564 SAMTools SNP 22832 22832 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40564 SAMTools SNP 23436 23436 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 24808 24808 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 24837 24837 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 26812 26812 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 26818 26818 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 26921 26921 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold40564 SAMTools SNP 28588 28588 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold40564 SAMTools SNP 28698 28698 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold40564 SAMTools SNP 34464 34464 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.61%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold40564 SAMTools SNP 34768 34768 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.34%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold40564 SAMTools SNP 34798 34798 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.015%2C2.1e-08%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold40564 SAMTools SNP 35880 35880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40564 SAMTools SNP 35893 35893 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40564 SAMTools SNP 36298 36298 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold40564 SAMTools SNP 36316 36316 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40564 SAMTools SNP 37062 37062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40564 SAMTools SNP 37081 37081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40564 SAMTools SNP 37394 37394 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold40564 SAMTools SNP 37705 37705 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40564 SAMTools SNP 37726 37726 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40564 SAMTools SNP 37747 37747 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40564 SAMTools SNP 38378 38378 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40564 SAMTools SNP 38541 38541 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40564 SAMTools SNP 38564 38564 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C67:43 scaffold40564 SAMTools SNP 38592 38592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40564 SAMTools SNP 38835 38835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40564 SAMTools SNP 38880 38880 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.5%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold40564 SAMTools SNP 39315 39315 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold40564 SAMTools SNP 39342 39342 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 41525 41525 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40564 SAMTools SNP 42409 42409 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40564 SAMTools SNP 42969 42969 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40564 SAMTools SNP 42999 42999 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40564 SAMTools SNP 48586 48586 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C33%2C0:63 scaffold40564 SAMTools SNP 54459 54459 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40564 SAMTools SNP 71829 71829 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D42%3BFQ%3D77.8%3BPV4%3D1%2C1%2C0.056%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C119:99 scaffold40564 SAMTools SNP 71840 71840 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C0.02%2C0.089%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold40564 SAMTools SNP 71862 71862 39.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C8%2C0:14 scaffold40564 SAMTools SNP 71939 71939 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D38%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C41:44 scaffold40564 SAMTools SNP 72170 72170 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold40564 SAMTools SNP 72208 72208 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40564 SAMTools SNP 72293 72293 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 72315 72315 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 73499 73499 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold40564 SAMTools SNP 73502 73502 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.34%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold40564 SAMTools SNP 73512 73512 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C0.34%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C35:38 scaffold40564 SAMTools SNP 75867 75867 3.27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C12%2C0:9 scaffold40564 SAMTools SNP 75911 75911 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold40564 SAMTools SNP 75913 75913 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold40564 SAMTools SNP 76612 76612 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 76643 76643 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 76812 76812 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40564 SAMTools SNP 77295 77295 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40584 SAMTools SNP 344 344 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40584 SAMTools SNP 455 455 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40584 SAMTools SNP 510 510 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40584 SAMTools SNP 31438 31438 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold40584 SAMTools SNP 48646 48646 17.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold40586 SAMTools SNP 9929 9929 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40586 SAMTools SNP 12662 12662 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.099%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40586 SAMTools SNP 14242 14242 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold40586 SAMTools SNP 21183 21183 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold40586 SAMTools SNP 21223 21223 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold40586 SAMTools SNP 26873 26873 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40586 SAMTools SNP 32166 32166 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold40586 SAMTools SNP 32181 32181 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold40586 SAMTools SNP 33210 33210 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.27%2C0.33%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold40586 SAMTools SNP 53912 53912 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40586 SAMTools SNP 53961 53961 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40598 SAMTools SNP 11255 11255 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.23%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold40598 SAMTools SNP 46449 46449 68 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold40598 SAMTools SNP 46450 46450 75 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold40598 SAMTools SNP 82514 82514 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.28%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold406 SAMTools SNP 9884 9884 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 9940 9940 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 10031 10031 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold406 SAMTools SNP 40780 40780 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold406 SAMTools SNP 120500 120500 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold406 SAMTools SNP 120527 120527 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 140454 140454 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 140455 140455 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 142105 142105 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold406 SAMTools SNP 197129 197129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 197168 197168 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 274250 274250 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C0%2C8%3BMQ%3D48%3BFQ%3D143%3BPV4%3D0.0019%2C1%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold406 SAMTools SNP 274316 274316 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C17%3BMQ%3D48%3BFQ%3D173%3BPV4%3D1%2C0.082%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C200:99 scaffold406 SAMTools SNP 342147 342147 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C3.2e-06%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C69:72 scaffold406 SAMTools SNP 343286 343286 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold406 SAMTools SNP 343305 343305 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold406 SAMTools SNP 345899 345899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 346178 346178 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C8.2e-11%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C218:99 scaffold406 SAMTools SNP 346254 346254 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.8e-20%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C218:43 scaffold406 SAMTools SNP 346434 346434 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 346485 346485 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold406 SAMTools SNP 346499 346499 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold406 SAMTools SNP 347127 347127 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold406 SAMTools SNP 349004 349004 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 349497 349497 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold406 SAMTools SNP 349953 349953 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 351919 351919 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold406 SAMTools SNP 360314 360314 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 361304 361304 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 361578 361578 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold406 SAMTools SNP 361598 361598 142 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold406 SAMTools SNP 362861 362861 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 363516 363516 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 363532 363532 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 376926 376926 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 398959 398959 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.3%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C245:99 scaffold406 SAMTools SNP 399751 399751 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 399789 399789 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 400603 400603 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C69:72 scaffold406 SAMTools SNP 404349 404349 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 418377 418377 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold406 SAMTools SNP 418395 418395 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold406 SAMTools SNP 420522 420522 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold406 SAMTools SNP 426314 426314 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.5%2C0.044%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C222:92 scaffold406 SAMTools SNP 426320 426320 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.028%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold406 SAMTools SNP 426322 426322 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.47%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C250:99 scaffold406 SAMTools SNP 426616 426616 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C21%2C0:39 scaffold406 SAMTools SNP 427166 427166 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold406 SAMTools SNP 427349 427349 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C57%2C0:99 scaffold406 SAMTools SNP 427433 427433 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C51%2C0:99 scaffold406 SAMTools SNP 428031 428031 65.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold406 SAMTools SNP 428049 428049 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold406 SAMTools SNP 429102 429102 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 429280 429280 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 429392 429392 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold406 SAMTools SNP 430517 430517 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold406 SAMTools SNP 430525 430525 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold406 SAMTools SNP 430531 430531 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.13%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold406 SAMTools SNP 431255 431255 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold406 SAMTools SNP 431743 431743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C22%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 431779 431779 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C14%2C3%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.012%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold406 SAMTools SNP 431782 431782 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.00098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold406 SAMTools SNP 432232 432232 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold406 SAMTools SNP 432571 432571 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.55%2C0.00014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold406 SAMTools SNP 432574 432574 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold406 SAMTools SNP 433231 433231 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold406 SAMTools SNP 433530 433530 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C67%2C4%3BMQ%3D46%3BFQ%3D223%3BPV4%3D0.12%2C0.067%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold406 SAMTools SNP 433593 433593 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C121%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold406 SAMTools SNP 433933 433933 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C61%2C43%2C68%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.78%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 433993 433993 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C16%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 434631 434631 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.067%2C4.6e-07%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold406 SAMTools SNP 434637 434637 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.63%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold406 SAMTools SNP 434927 434927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 434971 434971 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold406 SAMTools SNP 435094 435094 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 435663 435663 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D25%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.55%2C0.073%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold406 SAMTools SNP 440085 440085 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold406 SAMTools SNP 459767 459767 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold406 SAMTools SNP 460925 460925 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold406 SAMTools SNP 462100 462100 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.4%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C107:59 scaffold406 SAMTools SNP 463326 463326 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold406 SAMTools SNP 463643 463643 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 465488 465488 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold406 SAMTools SNP 466040 466040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C2%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 466067 466067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold406 SAMTools SNP 468105 468105 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C156:47 scaffold406 SAMTools SNP 475922 475922 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C69%2C0:99 scaffold406 SAMTools SNP 476644 476644 48.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold406 SAMTools SNP 476776 476776 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.014%2C2.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold406 SAMTools SNP 477055 477055 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C60%2C0:99 scaffold406 SAMTools SNP 477288 477288 85.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C7:10 scaffold406 SAMTools SNP 477358 477358 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.27%2C0.00068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold406 SAMTools SNP 477376 477376 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C24%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold406 SAMTools SNP 500533 500533 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 507636 507636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C9%2C2%3BMQ%3D47%3BFQ%3D181%3BPV4%3D0.32%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold406 SAMTools SNP 509648 509648 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C4%3BMQ%3D46%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold406 SAMTools SNP 515328 515328 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 517458 517458 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold406 SAMTools SNP 519099 519099 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 519248 519248 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 519706 519706 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 525587 525587 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.017%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C158:81 scaffold406 SAMTools SNP 525990 525990 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold406 SAMTools SNP 529383 529383 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C0.011%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold406 SAMTools SNP 529673 529673 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0021%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold406 SAMTools SNP 531260 531260 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold406 SAMTools SNP 531536 531536 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 538432 538432 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C16%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C7e-35%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold406 SAMTools SNP 538603 538603 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 539385 539385 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C13%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold406 SAMTools SNP 539431 539431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold406 SAMTools SNP 539503 539503 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.11%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C238:99 scaffold406 SAMTools SNP 539744 539744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 539779 539779 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0034%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 539800 539800 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C15%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C229:99 scaffold406 SAMTools SNP 540989 540989 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C36%2C0:69 scaffold406 SAMTools SNP 551105 551105 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 551112 551112 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold406 SAMTools SNP 554716 554716 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold406 SAMTools SNP 581029 581029 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold406 SAMTools SNP 608798 608798 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold406 SAMTools SNP 608822 608822 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 640527 640527 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.07%2C1.1e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold406 SAMTools SNP 641659 641659 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold406 SAMTools SNP 658551 658551 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold406 SAMTools SNP 672443 672443 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold406 SAMTools SNP 674763 674763 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold406 SAMTools SNP 674796 674796 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.53%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold406 SAMTools SNP 674801 674801 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold406 SAMTools SNP 674975 674975 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold406 SAMTools SNP 675695 675695 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold406 SAMTools SNP 675701 675701 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold406 SAMTools SNP 675711 675711 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold406 SAMTools SNP 675820 675820 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold406 SAMTools SNP 676008 676008 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold406 SAMTools SNP 696587 696587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold406 SAMTools SNP 696619 696619 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold406 SAMTools SNP 696635 696635 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C33%2C0:63 scaffold406 SAMTools SNP 696694 696694 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 697994 697994 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold406 SAMTools SNP 697996 697996 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold406 SAMTools SNP 698129 698129 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0002%2C0.44%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold406 SAMTools SNP 700868 700868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.15%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold406 SAMTools SNP 700900 700900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C0.025%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold406 SAMTools SNP 700914 700914 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.28%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold406 SAMTools SNP 701231 701231 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 701710 701710 19 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold406 SAMTools SNP 701800 701800 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 704566 704566 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold406 SAMTools SNP 737532 737532 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 739371 739371 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold406 SAMTools SNP 739393 739393 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold406 SAMTools SNP 765427 765427 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C33%2C0:63 scaffold406 SAMTools SNP 765488 765488 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 766610 766610 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold406 SAMTools SNP 769184 769184 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 769192 769192 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold406 SAMTools SNP 778254 778254 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold406 SAMTools SNP 778437 778437 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold406 SAMTools SNP 780429 780429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C69%2C61%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0095%2C2.5e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 781933 781933 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C45%2C3%2C15%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.034%2C0.003%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold406 SAMTools SNP 783469 783469 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C239:99 scaffold406 SAMTools SNP 783473 783473 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C239:99 scaffold406 SAMTools SNP 784222 784222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 784223 784223 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.61%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold406 SAMTools SNP 784573 784573 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C24%2C42%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 786124 786124 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 786479 786479 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 789361 789361 17.1 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold406 SAMTools SNP 789381 789381 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C11%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.43%2C0.0067%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold406 SAMTools SNP 792135 792135 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C93%2C2%2C23%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.44%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold406 SAMTools SNP 792434 792434 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 792444 792444 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.32%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold406 SAMTools SNP 793242 793242 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold406 SAMTools SNP 793284 793284 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold406 SAMTools SNP 793308 793308 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold406 SAMTools SNP 793618 793618 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.21%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold406 SAMTools SNP 793619 793619 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold406 SAMTools SNP 793643 793643 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold406 SAMTools SNP 793691 793691 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold406 SAMTools SNP 795191 795191 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C4%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 795273 795273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C55%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold406 SAMTools SNP 795450 795450 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C2%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 795513 795513 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold406 SAMTools SNP 795755 795755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold406 SAMTools SNP 795758 795758 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold406 SAMTools SNP 795791 795791 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D0.33%2C0.00033%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C32:35 scaffold406 SAMTools SNP 797737 797737 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold406 SAMTools SNP 799129 799129 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 799460 799460 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C5.4e-23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 803922 803922 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold406 SAMTools SNP 804340 804340 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold406 SAMTools SNP 804963 804963 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold406 SAMTools SNP 804991 804991 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold406 SAMTools SNP 805279 805279 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold406 SAMTools SNP 805288 805288 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold406 SAMTools SNP 805772 805772 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold406 SAMTools SNP 805847 805847 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C4.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold406 SAMTools SNP 806331 806331 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold406 SAMTools SNP 809185 809185 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C69%2C0:99 scaffold406 SAMTools SNP 811298 811298 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.2%2C5.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C129:76 scaffold406 SAMTools SNP 811455 811455 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C123%2C0:99 scaffold406 SAMTools SNP 811525 811525 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C233:99 scaffold406 SAMTools SNP 813856 813856 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold406 SAMTools SNP 813930 813930 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold406 SAMTools SNP 813954 813954 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold406 SAMTools SNP 814294 814294 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold406 SAMTools SNP 814540 814540 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold406 SAMTools SNP 814573 814573 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.13%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold406 SAMTools SNP 814710 814710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold406 SAMTools SNP 814740 814740 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 814758 814758 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.061%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold406 SAMTools SNP 814770 814770 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold406 SAMTools SNP 825959 825959 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold406 SAMTools SNP 826365 826365 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold406 SAMTools SNP 826833 826833 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C1%2C32%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.00014%2C0.47%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 827409 827409 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C24%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.017%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold406 SAMTools SNP 828075 828075 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold406 SAMTools SNP 828398 828398 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C24%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold406 SAMTools SNP 830141 830141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 830226 830226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold406 SAMTools SNP 830695 830695 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold406 SAMTools SNP 830703 830703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold406 SAMTools SNP 830727 830727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold406 SAMTools SNP 831208 831208 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C1%2C14%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.013%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold406 SAMTools SNP 831361 831361 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C28%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 831421 831421 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C31%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold406 SAMTools SNP 831439 831439 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C26%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C0.14%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold406 SAMTools SNP 831451 831451 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C30%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.048%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold406 SAMTools SNP 831657 831657 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.093%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold406 SAMTools SNP 831663 831663 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C27%2C0:51 scaffold406 SAMTools SNP 831705 831705 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold406 SAMTools SNP 832073 832073 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold406 SAMTools SNP 832088 832088 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C240:99 scaffold406 SAMTools SNP 832097 832097 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C223:99 scaffold406 SAMTools SNP 832942 832942 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 832987 832987 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold406 SAMTools SNP 833470 833470 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold406 SAMTools SNP 833525 833525 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 834071 834071 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C214:99 scaffold406 SAMTools SNP 834080 834080 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C0:75 scaffold406 SAMTools SNP 835222 835222 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold406 SAMTools SNP 835227 835227 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.092%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold406 SAMTools SNP 835241 835241 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C184:65 scaffold406 SAMTools SNP 835373 835373 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold406 SAMTools SNP 836300 836300 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold406 SAMTools SNP 836714 836714 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C217:99 scaffold406 SAMTools SNP 836738 836738 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold406 SAMTools SNP 837817 837817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0027%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 838270 838270 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C25%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 838294 838294 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 848198 848198 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold406 SAMTools SNP 848220 848220 66.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold406 SAMTools SNP 848262 848262 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold406 SAMTools SNP 849367 849367 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D46%3BFQ%3D57.9%3BPV4%3D1%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C85:88 scaffold406 SAMTools SNP 849409 849409 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold406 SAMTools SNP 849505 849505 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold406 SAMTools SNP 849520 849520 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold406 SAMTools SNP 849774 849774 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 849792 849792 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 856719 856719 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C39%2C0:72 scaffold406 SAMTools SNP 857223 857223 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold406 SAMTools SNP 857263 857263 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold406 SAMTools SNP 857971 857971 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.47%2C2e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C194:99 scaffold406 SAMTools SNP 858012 858012 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C66%2C0:99 scaffold406 SAMTools SNP 859410 859410 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C0%2C19%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0028%2C0.00041%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold406 SAMTools SNP 859489 859489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C14%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 859614 859614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 859624 859624 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold406 SAMTools SNP 860292 860292 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold406 SAMTools SNP 860542 860542 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C51%2C21%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold406 SAMTools SNP 860591 860591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold406 SAMTools SNP 864733 864733 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold406 SAMTools SNP 864802 864802 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.64%2C0.5%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold406 SAMTools SNP 865129 865129 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.093%2C0.14%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold406 SAMTools SNP 865130 865130 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold406 SAMTools SNP 865187 865187 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold406 SAMTools SNP 865404 865404 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C28%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.48%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold406 SAMTools SNP 866318 866318 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C23%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold406 SAMTools SNP 866400 866400 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 866401 866401 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold406 SAMTools SNP 868302 868302 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold406 SAMTools SNP 868303 868303 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40606 SAMTools SNP 10133 10133 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold40606 SAMTools SNP 10140 10140 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40606 SAMTools SNP 10193 10193 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold40606 SAMTools SNP 10448 10448 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40606 SAMTools SNP 11004 11004 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40606 SAMTools SNP 11600 11600 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40606 SAMTools SNP 11877 11877 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40606 SAMTools SNP 12010 12010 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold40606 SAMTools SNP 12015 12015 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40606 SAMTools SNP 12866 12866 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C110:43 scaffold40606 SAMTools SNP 12872 12872 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C27%2C0:51 scaffold40606 SAMTools SNP 14064 14064 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40606 SAMTools SNP 14514 14514 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold40606 SAMTools SNP 15552 15552 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C155:99 scaffold40606 SAMTools SNP 15568 15568 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40606 SAMTools SNP 16803 16803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40606 SAMTools SNP 17469 17469 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40606 SAMTools SNP 17514 17514 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40606 SAMTools SNP 17779 17779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40606 SAMTools SNP 17797 17797 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold40606 SAMTools SNP 17845 17845 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.25%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold40606 SAMTools SNP 19006 19006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40606 SAMTools SNP 19060 19060 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold40606 SAMTools SNP 19821 19821 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold40606 SAMTools SNP 19905 19905 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40606 SAMTools SNP 19911 19911 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.17%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold40606 SAMTools SNP 22861 22861 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40606 SAMTools SNP 23165 23165 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40606 SAMTools SNP 34676 34676 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40606 SAMTools SNP 50808 50808 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold40606 SAMTools SNP 54426 54426 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold40606 SAMTools SNP 54663 54663 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40606 SAMTools SNP 54683 54683 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40606 SAMTools SNP 58535 58535 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40606 SAMTools SNP 58667 58667 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C1%2C115%2C0%3BMQ%3D48%3BFQ%3D160%3BPV4%3D1%2C2.6e-22%2C0.003%2C5.7e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold40606 SAMTools SNP 59794 59794 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C0%2C25%3BMQ%3D47%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C216:99 scaffold40606 SAMTools SNP 59795 59795 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D48%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C202:59 scaffold40610 SAMTools SNP 751 751 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40610 SAMTools SNP 888 888 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 5825 5825 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40612 SAMTools SNP 6790 6790 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40612 SAMTools SNP 7559 7559 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.49%2C0.12%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C219:99 scaffold40612 SAMTools SNP 8034 8034 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C166:83 scaffold40612 SAMTools SNP 8141 8141 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold40612 SAMTools SNP 8156 8156 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40612 SAMTools SNP 8688 8688 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold40612 SAMTools SNP 8695 8695 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold40612 SAMTools SNP 10076 10076 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 10079 10079 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 10507 10507 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 10531 10531 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold40612 SAMTools SNP 10555 10555 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40612 SAMTools SNP 10583 10583 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold40612 SAMTools SNP 11114 11114 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40612 SAMTools SNP 11141 11141 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold40612 SAMTools SNP 11473 11473 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold40612 SAMTools SNP 11525 11525 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold40612 SAMTools SNP 11562 11562 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.014%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold40612 SAMTools SNP 11707 11707 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40612 SAMTools SNP 12318 12318 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40612 SAMTools SNP 12378 12378 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40612 SAMTools SNP 12736 12736 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold40612 SAMTools SNP 12748 12748 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40612 SAMTools SNP 13157 13157 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40612 SAMTools SNP 13831 13831 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold40612 SAMTools SNP 13867 13867 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.41%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C155:99 scaffold40612 SAMTools SNP 13894 13894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40612 SAMTools SNP 13918 13918 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold40612 SAMTools SNP 14808 14808 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 15760 15760 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 15852 15852 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40612 SAMTools SNP 15916 15916 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C178:99 scaffold40612 SAMTools SNP 18226 18226 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40612 SAMTools SNP 32218 32218 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C207:56 scaffold40612 SAMTools SNP 42781 42781 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C15%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 47435 47435 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C12%2C42%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.11%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold40612 SAMTools SNP 48015 48015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C19%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 48456 48456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.4%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 48483 48483 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.037%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold40612 SAMTools SNP 51954 51954 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.4%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold40612 SAMTools SNP 54999 54999 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold40612 SAMTools SNP 55036 55036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 55092 55092 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 55242 55242 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 55258 55258 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.096%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 55270 55270 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C116:99 scaffold40612 SAMTools SNP 55273 55273 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C5.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C176:72 scaffold40612 SAMTools SNP 55605 55605 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40612 SAMTools SNP 55616 55616 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40612 SAMTools SNP 56235 56235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40612 SAMTools SNP 56943 56943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold40612 SAMTools SNP 57786 57786 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40612 SAMTools SNP 57936 57936 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold40612 SAMTools SNP 57975 57975 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold40612 SAMTools SNP 57987 57987 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold40612 SAMTools SNP 58189 58189 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold40612 SAMTools SNP 58245 58245 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold40612 SAMTools SNP 58531 58531 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40612 SAMTools SNP 58884 58884 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40612 SAMTools SNP 58896 58896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40612 SAMTools SNP 60110 60110 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 60115 60115 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40612 SAMTools SNP 60209 60209 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40612 SAMTools SNP 60642 60642 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40612 SAMTools SNP 60651 60651 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40612 SAMTools SNP 60820 60820 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40612 SAMTools SNP 60844 60844 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40612 SAMTools SNP 62639 62639 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C1%2C47%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold40612 SAMTools SNP 62702 62702 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C210:99 scaffold40612 SAMTools SNP 76877 76877 21.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold40612 SAMTools SNP 77642 77642 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C19%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.79%2C5.8e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold40612 SAMTools SNP 78061 78061 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold40612 SAMTools SNP 83107 83107 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C6.5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40612 SAMTools SNP 85885 85885 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C106:99 scaffold40612 SAMTools SNP 86492 86492 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold40612 SAMTools SNP 86498 86498 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40612 SAMTools SNP 91767 91767 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0048%2C0.28%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C30:33 scaffold40612 SAMTools SNP 91771 91771 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40612 SAMTools SNP 91930 91930 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40612 SAMTools SNP 91951 91951 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40612 SAMTools SNP 94071 94071 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold40614 SAMTools SNP 1078 1078 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40614 SAMTools SNP 21468 21468 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C27:30 scaffold40614 SAMTools SNP 21492 21492 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40614 SAMTools SNP 23028 23028 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D41%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C78:34 scaffold40614 SAMTools SNP 23573 23573 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold40614 SAMTools SNP 29832 29832 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold40614 SAMTools SNP 41685 41685 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 56067 56067 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 65215 65215 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 81817 81817 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold40614 SAMTools SNP 82454 82454 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold40614 SAMTools SNP 82517 82517 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C149:99 scaffold40614 SAMTools SNP 83233 83233 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold40614 SAMTools SNP 84918 84918 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold40614 SAMTools SNP 85196 85196 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold40614 SAMTools SNP 86342 86342 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 86364 86364 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 89382 89382 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40614 SAMTools SNP 89623 89623 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40614 SAMTools SNP 89658 89658 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40614 SAMTools SNP 90102 90102 52.8 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C72%2C66%2C86%2C0%2C80:10 scaffold40614 SAMTools SNP 92389 92389 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40624 SAMTools SNP 155 155 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40624 SAMTools SNP 229 229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40624 SAMTools SNP 232 232 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40624 SAMTools SNP 92089 92089 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40624 SAMTools SNP 92601 92601 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 557 557 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 582 582 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40634 SAMTools SNP 603 603 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold40634 SAMTools SNP 983 983 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40634 SAMTools SNP 9162 9162 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.58%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C244:43 scaffold40634 SAMTools SNP 11115 11115 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C236:60 scaffold40634 SAMTools SNP 19417 19417 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40634 SAMTools SNP 19456 19456 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 40343 40343 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1155%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C14%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C38:41 scaffold40634 SAMTools SNP 40661 40661 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C92%2C2%2C13%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.19%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold40634 SAMTools SNP 40686 40686 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C86%2C1%2C14%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold40634 SAMTools SNP 40979 40979 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold40634 SAMTools SNP 40994 40994 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.029%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C102:99 scaffold40634 SAMTools SNP 41343 41343 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C7%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C148%2C0:99 scaffold40634 SAMTools SNP 41518 41518 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C36%2C27%2C27%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.00022%2C2.1e-61%2C1%2C3.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold40634 SAMTools SNP 41611 41611 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C133%2C112%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-23%2C1.9e-155%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40634 SAMTools SNP 41974 41974 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold40634 SAMTools SNP 42405 42405 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0073%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C16:19 scaffold40634 SAMTools SNP 42651 42651 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C75%2C0:99 scaffold40634 SAMTools SNP 42694 42694 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C81%2C0:99 scaffold40634 SAMTools SNP 43121 43121 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold40634 SAMTools SNP 43198 43198 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1203%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold40634 SAMTools SNP 43291 43291 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D945%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C892%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 43370 43370 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold40634 SAMTools SNP 43555 43555 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C163%2C43%2C36%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D7.8e-11%2C4.3e-156%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold40634 SAMTools SNP 43604 43604 164 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C260%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C255%2C0:99 scaffold40634 SAMTools SNP 43775 43775 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D835%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold40634 SAMTools SNP 43877 43877 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C88%2C19%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40634 SAMTools SNP 44042 44042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C221%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 44108 44108 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 44141 44141 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 44197 44197 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 45072 45072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 45423 45423 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C251%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40634 SAMTools SNP 46209 46209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40634 SAMTools SNP 46226 46226 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold40634 SAMTools SNP 48348 48348 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C6%2C60%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.035%2C3.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C254:99 scaffold40634 SAMTools SNP 48369 48369 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C255%2C0:99 scaffold40634 SAMTools SNP 48422 48422 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold40634 SAMTools SNP 48425 48425 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C93:39 scaffold40634 SAMTools SNP 48938 48938 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C5.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold40634 SAMTools SNP 48939 48939 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C3.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold40634 SAMTools SNP 48954 48954 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D5.4e-05%2C1.2e-16%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C228:71 scaffold40634 SAMTools SNP 50132 50132 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.16%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40634 SAMTools SNP 50417 50417 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold40634 SAMTools SNP 62556 62556 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold40634 SAMTools SNP 64412 64412 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40634 SAMTools SNP 75499 75499 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40634 SAMTools SNP 76390 76390 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40634 SAMTools SNP 76432 76432 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40634 SAMTools SNP 77491 77491 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 77497 77497 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 83263 83263 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40634 SAMTools SNP 84410 84410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 86291 86291 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold40634 SAMTools SNP 90552 90552 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40634 SAMTools SNP 94140 94140 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40634 SAMTools SNP 94155 94155 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40638 SAMTools SNP 3943 3943 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D10%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C169%2C0:99 scaffold40638 SAMTools SNP 3955 3955 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C12%2C10%3BMQ%3D21%3BFQ%3D38%3BPV4%3D0.19%2C0.022%2C0.28%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C154:68 scaffold40638 SAMTools SNP 4325 4325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C15%3BMQ%3D42%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold40638 SAMTools SNP 4373 4373 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C37%3BMQ%3D48%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold40638 SAMTools SNP 4400 4400 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C2%2C36%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.097%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40638 SAMTools SNP 4884 4884 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C32%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold40638 SAMTools SNP 5877 5877 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold40638 SAMTools SNP 8458 8458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40638 SAMTools SNP 8509 8509 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C64%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold40638 SAMTools SNP 8884 8884 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold40638 SAMTools SNP 21395 21395 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40638 SAMTools SNP 22588 22588 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold40638 SAMTools SNP 23128 23128 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40638 SAMTools SNP 23133 23133 88 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold40638 SAMTools SNP 23728 23728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40638 SAMTools SNP 23740 23740 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40638 SAMTools SNP 23755 23755 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40638 SAMTools SNP 24389 24389 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold40638 SAMTools SNP 24419 24419 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40638 SAMTools SNP 24434 24434 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold40638 SAMTools SNP 25315 25315 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold40638 SAMTools SNP 25325 25325 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40638 SAMTools SNP 41713 41713 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40638 SAMTools SNP 42117 42117 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40638 SAMTools SNP 42120 42120 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40638 SAMTools SNP 59293 59293 49.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold40644 SAMTools SNP 83 83 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40644 SAMTools SNP 47727 47727 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40644 SAMTools SNP 49914 49914 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40644 SAMTools SNP 52931 52931 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0022%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C158:49 scaffold40644 SAMTools SNP 53077 53077 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold40644 SAMTools SNP 59448 59448 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold40644 SAMTools SNP 59462 59462 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold40644 SAMTools SNP 59674 59674 53.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C9%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C3.1e-12%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C11:14 scaffold40644 SAMTools SNP 64564 64564 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40644 SAMTools SNP 95707 95707 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold40658 SAMTools SNP 3400 3400 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40658 SAMTools SNP 3450 3450 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40658 SAMTools SNP 3560 3560 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40658 SAMTools SNP 3582 3582 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40658 SAMTools SNP 3774 3774 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C18%2C0:33 scaffold40658 SAMTools SNP 3777 3777 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C18%2C0:33 scaffold40658 SAMTools SNP 4750 4750 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold40658 SAMTools SNP 4931 4931 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C4%2C0%3BMQ%3D48%3BFQ%3D12.3%3BPV4%3D0.57%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40658 SAMTools SNP 4991 4991 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C5%2C0%3BMQ%3D47%3BFQ%3D46%3BPV4%3D0.0019%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold40658 SAMTools SNP 5571 5571 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C14%2C71%2C3%3BMQ%3D48%3BFQ%3D212%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold40658 SAMTools SNP 6832 6832 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C154%2C0%2C64%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0005%2C3.2e-28%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold40658 SAMTools SNP 7119 7119 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C45%2C6%2C17%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.00089%2C2.8e-09%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold40658 SAMTools SNP 12227 12227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 12998 12998 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.5%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold40658 SAMTools SNP 13017 13017 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold40658 SAMTools SNP 13250 13250 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold40658 SAMTools SNP 17231 17231 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40658 SAMTools SNP 17279 17279 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40658 SAMTools SNP 17291 17291 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40658 SAMTools SNP 17790 17790 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40658 SAMTools SNP 17804 17804 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold40658 SAMTools SNP 18504 18504 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold40658 SAMTools SNP 18832 18832 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40658 SAMTools SNP 24620 24620 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D48%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold40658 SAMTools SNP 24740 24740 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40658 SAMTools SNP 30057 30057 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C48%2C28%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1.3e-12%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold40658 SAMTools SNP 31782 31782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.33%2C0.11%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 35229 35229 224 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C37%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C237:99 scaffold40658 SAMTools SNP 44949 44949 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold40658 SAMTools SNP 44962 44962 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40658 SAMTools SNP 47466 47466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold40658 SAMTools SNP 48483 48483 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40658 SAMTools SNP 48504 48504 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40658 SAMTools SNP 48938 48938 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C63%2C0:99 scaffold40658 SAMTools SNP 51551 51551 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0076%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C160:34 scaffold40658 SAMTools SNP 52765 52765 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40658 SAMTools SNP 55105 55105 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold40658 SAMTools SNP 55452 55452 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.001%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C29:32 scaffold40658 SAMTools SNP 66665 66665 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.069%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold40658 SAMTools SNP 66965 66965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40658 SAMTools SNP 67067 67067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C16%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold40658 SAMTools SNP 67800 67800 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C21%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 68864 68864 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C65%2C24%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.061%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 69941 69941 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 69963 69963 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 70022 70022 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C17%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.74%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold40658 SAMTools SNP 70061 70061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D589%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C558%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40658 SAMTools SNP 70297 70297 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C560%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40658 SAMTools SNP 70387 70387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold40658 SAMTools SNP 71053 71053 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold40658 SAMTools SNP 71954 71954 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold40658 SAMTools SNP 71965 71965 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40658 SAMTools SNP 72146 72146 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40658 SAMTools SNP 72589 72589 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold40658 SAMTools SNP 75639 75639 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40658 SAMTools SNP 75684 75684 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold40658 SAMTools SNP 76018 76018 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C0.035%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold40658 SAMTools SNP 76044 76044 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold40658 SAMTools SNP 76065 76065 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold40658 SAMTools SNP 76200 76200 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40658 SAMTools SNP 76392 76392 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40658 SAMTools SNP 77526 77526 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold40658 SAMTools SNP 77603 77603 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C4%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.0014%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C220:99 scaffold40658 SAMTools SNP 77693 77693 95.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C18%2C0:33 scaffold40658 SAMTools SNP 78070 78070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40658 SAMTools SNP 78111 78111 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold40658 SAMTools SNP 78163 78163 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C54%2C0:99 scaffold40658 SAMTools SNP 78654 78654 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold40658 SAMTools SNP 78973 78973 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.067%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C138:37 scaffold40658 SAMTools SNP 79162 79162 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold40658 SAMTools SNP 79186 79186 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0049%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C228:99 scaffold40658 SAMTools SNP 79630 79630 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.61%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold40658 SAMTools SNP 80053 80053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40658 SAMTools SNP 80120 80120 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold40658 SAMTools SNP 80261 80261 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.13%2C8.9e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold40658 SAMTools SNP 80322 80322 55.8 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold40658 SAMTools SNP 82040 82040 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold40658 SAMTools SNP 83328 83328 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C33%2C0:63 scaffold40658 SAMTools SNP 83810 83810 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40658 SAMTools SNP 84078 84078 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold40658 SAMTools SNP 84317 84317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C7%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold40658 SAMTools SNP 86731 86731 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold40658 SAMTools SNP 86757 86757 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40658 SAMTools SNP 86772 86772 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold40658 SAMTools SNP 89123 89123 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40658 SAMTools SNP 89715 89715 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold40658 SAMTools SNP 89732 89732 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C19%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold40658 SAMTools SNP 90895 90895 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C39%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold40658 SAMTools SNP 91612 91612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C196%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40658 SAMTools SNP 91650 91650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40658 SAMTools SNP 91699 91699 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C193%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40658 SAMTools SNP 91756 91756 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40664 SAMTools SNP 834 834 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold40664 SAMTools SNP 3588 3588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C9%2C15%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 4039 4039 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C48%3BMQ%3D47%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold40664 SAMTools SNP 4072 4072 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D44%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold40664 SAMTools SNP 6467 6467 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D47%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C111%2C0:99 scaffold40664 SAMTools SNP 6825 6825 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C28:31 scaffold40664 SAMTools SNP 6828 6828 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40664 SAMTools SNP 6843 6843 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40664 SAMTools SNP 6864 6864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40664 SAMTools SNP 7536 7536 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C5%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold40664 SAMTools SNP 8095 8095 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C30%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold40664 SAMTools SNP 8518 8518 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C59%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold40664 SAMTools SNP 8692 8692 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold40664 SAMTools SNP 8707 8707 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold40664 SAMTools SNP 9201 9201 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40664 SAMTools SNP 9207 9207 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40664 SAMTools SNP 11371 11371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C20%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold40664 SAMTools SNP 11377 11377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold40664 SAMTools SNP 14248 14248 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40664 SAMTools SNP 14393 14393 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C27%2C0:51 scaffold40664 SAMTools SNP 14434 14434 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C27%2C0:51 scaffold40664 SAMTools SNP 15035 15035 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C45%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold40664 SAMTools SNP 18311 18311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold40664 SAMTools SNP 18464 18464 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold40664 SAMTools SNP 22739 22739 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C67%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.083%2C3.8e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40664 SAMTools SNP 22870 22870 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C53%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C160%2C0:99 scaffold40664 SAMTools SNP 24450 24450 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40664 SAMTools SNP 26119 26119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C34%2C13%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 26197 26197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40664 SAMTools SNP 28921 28921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40664 SAMTools SNP 38681 38681 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C38%2C35%2C47%2C0%2C44:6 scaffold40664 SAMTools SNP 38726 38726 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40664 SAMTools SNP 39077 39077 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold40664 SAMTools SNP 47468 47468 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C65%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 49391 49391 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C31%2C45%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 53468 53468 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.08%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold40664 SAMTools SNP 53811 53811 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 60626 60626 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C57%2C0%2C16%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.01%2C5.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold40664 SAMTools SNP 60709 60709 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 61253 61253 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C39%2C0%2C20%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.31%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold40664 SAMTools SNP 61322 61322 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C19%3BMQ%3D50%3BFQ%3D-132%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold40664 SAMTools SNP 61342 61342 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C50%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold40664 SAMTools SNP 61449 61449 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C48:51 scaffold40664 SAMTools SNP 62153 62153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40664 SAMTools SNP 62350 62350 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40664 SAMTools SNP 62459 62459 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold40664 SAMTools SNP 62482 62482 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C138%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.04%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 63013 63013 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C7%2C187%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 63506 63506 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C23%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 63621 63621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C11%2C151%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.26%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 65516 65516 17.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold40664 SAMTools SNP 65600 65600 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D463%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C193%2C56%2C91%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 65629 65629 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C53%2C51%2C76%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.35%2C5e-17%2C0.00075%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40664 SAMTools SNP 66239 66239 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C1%2C156%3BMQ%3D50%3BFQ%3D-262%3BPV4%3D1%2C6e-61%2C1%2C7.4e-08;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C235%2C0:66 scaffold40664 SAMTools SNP 68368 68368 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C15%2C0:27 scaffold40664 SAMTools SNP 71008 71008 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold40664 SAMTools SNP 71039 71039 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40664 SAMTools SNP 72668 72668 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40664 SAMTools SNP 72703 72703 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40664 SAMTools SNP 73427 73427 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40664 SAMTools SNP 88175 88175 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40664 SAMTools SNP 88196 88196 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40680 SAMTools SNP 35 35 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40680 SAMTools SNP 54 54 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C159:99 scaffold40680 SAMTools SNP 109 109 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D49%3BFQ%3D37%3BPV4%3D1%2C0.0012%2C0.046%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C240:67 scaffold40680 SAMTools SNP 2657 2657 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D39%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C45%2C0:87 scaffold40680 SAMTools SNP 3583 3583 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold40680 SAMTools SNP 5395 5395 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40680 SAMTools SNP 35150 35150 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40680 SAMTools SNP 36199 36199 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold40680 SAMTools SNP 36295 36295 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold40680 SAMTools SNP 40659 40659 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold40680 SAMTools SNP 66234 66234 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold40680 SAMTools SNP 66625 66625 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40680 SAMTools SNP 67269 67269 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C27%2C0:51 scaffold40680 SAMTools SNP 67543 67543 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40680 SAMTools SNP 67569 67569 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40690 SAMTools SNP 69123 69123 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40690 SAMTools SNP 90777 90777 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40690 SAMTools SNP 90799 90799 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40690 SAMTools SNP 94575 94575 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40702 SAMTools SNP 423 423 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40702 SAMTools SNP 54348 54348 25.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold40702 SAMTools SNP 57932 57932 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold40702 SAMTools SNP 58428 58428 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold40702 SAMTools SNP 62973 62973 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C106:99 scaffold40702 SAMTools SNP 86872 86872 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40740 SAMTools SNP 1941 1941 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D3%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C129%2C0:90 scaffold40740 SAMTools SNP 2760 2760 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C20%2C0%3BMQ%3D49%3BFQ%3D158%3BPV4%3D0.0073%2C1%2C0.0097%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold40740 SAMTools SNP 3768 3768 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C12%2C15%2C0%3BMQ%3D49%3BFQ%3D36%3BPV4%3D0.11%2C4.6e-06%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold40740 SAMTools SNP 3827 3827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C36%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.014%2C0.096%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 4377 4377 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C4%2C10%3BMQ%3D49%3BFQ%3D156%3BPV4%3D0.33%2C0.12%2C0.069%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold40740 SAMTools SNP 4394 4394 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 4435 4435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 4989 4989 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C16%2C12%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold40740 SAMTools SNP 5050 5050 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C37%2C39%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C9.4e-27%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 6416 6416 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C45%2C0%2C14%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00029%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold40740 SAMTools SNP 6548 6548 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C41%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold40740 SAMTools SNP 6846 6846 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C43%2C11%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold40740 SAMTools SNP 7125 7125 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 8781 8781 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C21%2C5%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.39%2C1%2C1%2C6.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold40740 SAMTools SNP 8994 8994 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.6e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 9941 9941 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C35%2C3%2C44%3BMQ%3D50%3BFQ%3D169%3BPV4%3D3.1e-10%2C7.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold40740 SAMTools SNP 9951 9951 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C36%2C0%2C15%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1.5e-06%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold40740 SAMTools SNP 10482 10482 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold40740 SAMTools SNP 10488 10488 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C62%2C4%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.017%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold40740 SAMTools SNP 12018 12018 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C11%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold40740 SAMTools SNP 12038 12038 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 12265 12265 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C52%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold40740 SAMTools SNP 12328 12328 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40740 SAMTools SNP 12748 12748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.71%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 12809 12809 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C6%3BMQ%3D49%3BFQ%3D208%3BPV4%3D0.023%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold40740 SAMTools SNP 13445 13445 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.24%2C2.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C213:81 scaffold40740 SAMTools SNP 13491 13491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40740 SAMTools SNP 14229 14229 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C2%2C2%3BMQ%3D49%3BFQ%3D67%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold40740 SAMTools SNP 14266 14266 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C26%2C7%3BMQ%3D49%3BFQ%3D193%3BPV4%3D0.66%2C0.48%2C0.3%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold40740 SAMTools SNP 14267 14267 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C6%2C3%3BMQ%3D49%3BFQ%3D193%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold40740 SAMTools SNP 14290 14290 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 14634 14634 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40740 SAMTools SNP 14656 14656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C30%2C20%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 14707 14707 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C56%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 15046 15046 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 15059 15059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 15525 15525 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C5%2C40%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.28%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 16799 16799 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 17594 17594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C13%2C38%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 17642 17642 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold40740 SAMTools SNP 17669 17669 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0076%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40740 SAMTools SNP 17750 17750 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40740 SAMTools SNP 17753 17753 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold40740 SAMTools SNP 23630 23630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold40740 SAMTools SNP 23687 23687 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00099%2C0.38%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold40740 SAMTools SNP 23765 23765 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C138:99 scaffold40740 SAMTools SNP 35518 35518 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C10%2C16%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.36%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold40740 SAMTools SNP 35521 35521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C1%2C40%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 35824 35824 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C40%2C45%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 35847 35847 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C93%2C4%2C23%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.15%2C0.011%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold40740 SAMTools SNP 36033 36033 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C118%2C115%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 36120 36120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C70%2C53%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 36147 36147 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C138%2C51%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 36333 36333 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C21%2C4%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-24%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 36778 36778 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C107%2C12%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D2.5e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold40740 SAMTools SNP 36832 36832 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C124%2C36%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1.6e-16%2C0.35%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold40740 SAMTools SNP 37023 37023 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C56%2C170%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 37243 37243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C101%2C6%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 38111 38111 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C76%2C4%2C17%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.054%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold40740 SAMTools SNP 38855 38855 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C63%2C9%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C0.25%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold40740 SAMTools SNP 39013 39013 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C45%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-05%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 39040 39040 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C53%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 39348 39348 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C50%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold40740 SAMTools SNP 39693 39693 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C7%2C33%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 41684 41684 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C10%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0099%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold40740 SAMTools SNP 41702 41702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C55%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold40740 SAMTools SNP 45577 45577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C144:99 scaffold40740 SAMTools SNP 45588 45588 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold40740 SAMTools SNP 45724 45724 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C42%2C0:81 scaffold40740 SAMTools SNP 47832 47832 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C54%2C0:99 scaffold40740 SAMTools SNP 47841 47841 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold40740 SAMTools SNP 48189 48189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40740 SAMTools SNP 48240 48240 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40740 SAMTools SNP 51119 51119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40740 SAMTools SNP 51271 51271 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.16%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold40740 SAMTools SNP 51284 51284 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40740 SAMTools SNP 51486 51486 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.3%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold40740 SAMTools SNP 51890 51890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C12%2C43%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 52831 52831 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.00099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 52868 52868 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.00018%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold40740 SAMTools SNP 53399 53399 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold40740 SAMTools SNP 53653 53653 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold40740 SAMTools SNP 54115 54115 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold40740 SAMTools SNP 54184 54184 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0238%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold40740 SAMTools SNP 58937 58937 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C238:99 scaffold40740 SAMTools SNP 58949 58949 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C240:99 scaffold40740 SAMTools SNP 58977 58977 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.076%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C229:99 scaffold40740 SAMTools SNP 59069 59069 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 60006 60006 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C72%2C0:99 scaffold40740 SAMTools SNP 64237 64237 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C76%2C157%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 64276 64276 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C191%2C37%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40740 SAMTools SNP 65281 65281 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C53%2C24%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 65644 65644 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40740 SAMTools SNP 65808 65808 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 66053 66053 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C0.00037%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C74:46 scaffold40740 SAMTools SNP 67158 67158 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40740 SAMTools SNP 67221 67221 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C38:41 scaffold40740 SAMTools SNP 71277 71277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold40740 SAMTools SNP 71297 71297 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40740 SAMTools SNP 87393 87393 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40740 SAMTools SNP 88368 88368 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40740 SAMTools SNP 88427 88427 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold40740 SAMTools SNP 88715 88715 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.093%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold40740 SAMTools SNP 88721 88721 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C1%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold40740 SAMTools SNP 88938 88938 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 88941 88941 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 89013 89013 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C1%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold40740 SAMTools SNP 89166 89166 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold40740 SAMTools SNP 89759 89759 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 90071 90071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold40740 SAMTools SNP 90104 90104 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 90755 90755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C5%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.17%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 90767 90767 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C5%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 91160 91160 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C68%2C8%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 91485 91485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 91665 91665 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40740 SAMTools SNP 91681 91681 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C59%2C13%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 91905 91905 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.053%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold40740 SAMTools SNP 95493 95493 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.53%2C1%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold40740 SAMTools SNP 95499 95499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40740 SAMTools SNP 95523 95523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40740 SAMTools SNP 96274 96274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 96310 96310 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40740 SAMTools SNP 96498 96498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C20%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40744 SAMTools SNP 356 356 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40744 SAMTools SNP 390 390 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40744 SAMTools SNP 8065 8065 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C124:95 scaffold40744 SAMTools SNP 28173 28173 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold40744 SAMTools SNP 36032 36032 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40744 SAMTools SNP 37693 37693 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold40744 SAMTools SNP 38155 38155 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40744 SAMTools SNP 47290 47290 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40744 SAMTools SNP 47299 47299 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C29:32 scaffold40744 SAMTools SNP 50124 50124 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D23.5%3BPV4%3D1%2C2.3e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C60:53 scaffold40744 SAMTools SNP 88578 88578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40744 SAMTools SNP 88785 88785 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40786 SAMTools SNP 39068 39068 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40786 SAMTools SNP 40597 40597 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40786 SAMTools SNP 40655 40655 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold40786 SAMTools SNP 90976 90976 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40794 SAMTools SNP 33920 33920 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold40794 SAMTools SNP 34146 34146 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold40794 SAMTools SNP 97150 97150 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold408 SAMTools SNP 3005 3005 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold408 SAMTools SNP 3068 3068 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold408 SAMTools SNP 3212 3212 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold408 SAMTools SNP 11321 11321 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 12802 12802 28.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold408 SAMTools SNP 13092 13092 86.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold408 SAMTools SNP 13326 13326 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 14139 14139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 15334 15334 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C70%3BMQ%3D49%3BFQ%3D79%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C106:99 scaffold408 SAMTools SNP 15737 15737 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 15791 15791 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D4.1e-05%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold408 SAMTools SNP 15817 15817 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.8e-15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C213:61 scaffold408 SAMTools SNP 15836 15836 66.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C15:18 scaffold408 SAMTools SNP 16585 16585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C9%2C36%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C0.2%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 18233 18233 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.13%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold408 SAMTools SNP 18272 18272 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 20409 20409 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 20432 20432 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold408 SAMTools SNP 20437 20437 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold408 SAMTools SNP 20442 20442 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold408 SAMTools SNP 21374 21374 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold408 SAMTools SNP 22201 22201 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 22336 22336 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 22451 22451 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 22692 22692 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 22716 22716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C23%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold408 SAMTools SNP 22789 22789 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 22915 22915 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C242%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 24809 24809 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C96%2C26%2C4%3BMQ%3D49%3BFQ%3D135%3BPV4%3D1.8e-08%2C1%2C1%2C5.7e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold408 SAMTools SNP 25906 25906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.00035%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 25932 25932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 26117 26117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D868%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C735%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 28751 28751 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C57%2C0:99 scaffold408 SAMTools SNP 29073 29073 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C66%2C0:94 scaffold408 SAMTools SNP 30479 30479 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold408 SAMTools SNP 30713 30713 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold408 SAMTools SNP 30752 30752 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold408 SAMTools SNP 36892 36892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold408 SAMTools SNP 36940 36940 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold408 SAMTools SNP 36949 36949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold408 SAMTools SNP 37515 37515 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.44%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold408 SAMTools SNP 39791 39791 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 39859 39859 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C4%2C46%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 40479 40479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C7%2C46%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 40559 40559 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C47%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 40570 40570 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C43%2C27%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 40997 40997 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.39%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 40999 40999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 41006 41006 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C9%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold408 SAMTools SNP 41145 41145 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C1%2C19%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D4.4e-05%2C4.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold408 SAMTools SNP 42035 42035 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C5%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.016%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold408 SAMTools SNP 42303 42303 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C24%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D9.4e-07%2C1e-13%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold408 SAMTools SNP 42315 42315 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C24%2C17%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.00023%2C1.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold408 SAMTools SNP 42777 42777 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C58%2C7%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 42847 42847 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold408 SAMTools SNP 43457 43457 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 44934 44934 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 53785 53785 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold408 SAMTools SNP 54252 54252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold408 SAMTools SNP 94216 94216 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold408 SAMTools SNP 94296 94296 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold408 SAMTools SNP 95134 95134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold408 SAMTools SNP 95181 95181 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 99725 99725 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold408 SAMTools SNP 100813 100813 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C42%2C0:81 scaffold408 SAMTools SNP 103161 103161 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 140392 140392 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C152:28 scaffold408 SAMTools SNP 145946 145946 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C24:27 scaffold408 SAMTools SNP 146081 146081 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold408 SAMTools SNP 146153 146153 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 153123 153123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C42%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold408 SAMTools SNP 153132 153132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C31%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold408 SAMTools SNP 153985 153985 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold408 SAMTools SNP 154002 154002 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold408 SAMTools SNP 154035 154035 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 154107 154107 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold408 SAMTools SNP 154122 154122 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold408 SAMTools SNP 155646 155646 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 155700 155700 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold408 SAMTools SNP 156286 156286 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold408 SAMTools SNP 156798 156798 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold408 SAMTools SNP 157007 157007 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold408 SAMTools SNP 157144 157144 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold408 SAMTools SNP 158619 158619 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 159062 159062 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold408 SAMTools SNP 159332 159332 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 159353 159353 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 160040 160040 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.11%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold408 SAMTools SNP 160750 160750 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C9.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold408 SAMTools SNP 161276 161276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 161285 161285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 161321 161321 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold408 SAMTools SNP 161610 161610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C17%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 163500 163500 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C39%2C0:65 scaffold408 SAMTools SNP 166042 166042 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold408 SAMTools SNP 166083 166083 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C32:35 scaffold408 SAMTools SNP 166292 166292 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C175%2C0:99 scaffold408 SAMTools SNP 166458 166458 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C13%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C6.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C55%2C0:99 scaffold408 SAMTools SNP 166934 166934 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-05%2C4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 167221 167221 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold408 SAMTools SNP 168340 168340 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 168480 168480 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 168510 168510 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 168644 168644 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 173131 173131 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C7%2C27%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1.5e-50%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold408 SAMTools SNP 173218 173218 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold408 SAMTools SNP 173220 173220 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold408 SAMTools SNP 174781 174781 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0081%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold408 SAMTools SNP 174813 174813 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold408 SAMTools SNP 174825 174825 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C159:99 scaffold408 SAMTools SNP 174840 174840 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.089%2C0.044%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold408 SAMTools SNP 175579 175579 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold408 SAMTools SNP 175824 175824 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 179084 179084 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 179260 179260 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold408 SAMTools SNP 179346 179346 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 179679 179679 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 180568 180568 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 180623 180623 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold408 SAMTools SNP 180856 180856 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 181358 181358 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold408 SAMTools SNP 204335 204335 73.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold408 SAMTools SNP 204371 204371 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C29%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.005%2C2.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold408 SAMTools SNP 205210 205210 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C75%2C0:99 scaffold408 SAMTools SNP 258944 258944 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold408 SAMTools SNP 294547 294547 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C210:96 scaffold408 SAMTools SNP 295188 295188 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold408 SAMTools SNP 295199 295199 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold408 SAMTools SNP 295202 295202 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold408 SAMTools SNP 295216 295216 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold408 SAMTools SNP 295942 295942 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold408 SAMTools SNP 296794 296794 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold408 SAMTools SNP 296995 296995 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C7%2C8%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.52%2C5.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold408 SAMTools SNP 297205 297205 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C82:44 scaffold408 SAMTools SNP 297743 297743 9.08 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold408 SAMTools SNP 306204 306204 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold408 SAMTools SNP 383736 383736 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 388032 388032 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold408 SAMTools SNP 398052 398052 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 403234 403234 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 403692 403692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold408 SAMTools SNP 403716 403716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 403960 403960 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold408 SAMTools SNP 403963 403963 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold408 SAMTools SNP 404086 404086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 404596 404596 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 405659 405659 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.6%2C0.0044%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C190:99 scaffold408 SAMTools SNP 405693 405693 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 412067 412067 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 412121 412121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold408 SAMTools SNP 412160 412160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold408 SAMTools SNP 412584 412584 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold408 SAMTools SNP 414359 414359 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C33%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C249:99 scaffold408 SAMTools SNP 414384 414384 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.085%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold408 SAMTools SNP 414743 414743 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C2.4e-05%2C1%2C5.5e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C222:99 scaffold408 SAMTools SNP 415180 415180 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C60%2C23%2C49%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.11%2C8.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 416708 416708 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C4%2C32%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.094%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 416729 416729 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C10%2C4%3BMQ%3D48%3BFQ%3D188%3BPV4%3D1%2C0.0012%2C0.063%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold408 SAMTools SNP 418935 418935 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C40%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 419506 419506 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.25%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 419533 419533 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C40%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold408 SAMTools SNP 420712 420712 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold408 SAMTools SNP 421308 421308 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold408 SAMTools SNP 422120 422120 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C69:72 scaffold408 SAMTools SNP 422200 422200 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold408 SAMTools SNP 422208 422208 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.44%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C193:99 scaffold408 SAMTools SNP 422436 422436 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold408 SAMTools SNP 422791 422791 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold408 SAMTools SNP 422836 422836 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold408 SAMTools SNP 422959 422959 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold408 SAMTools SNP 422968 422968 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold408 SAMTools SNP 423477 423477 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold408 SAMTools SNP 424379 424379 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold408 SAMTools SNP 424415 424415 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold408 SAMTools SNP 424746 424746 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C0.082%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold408 SAMTools SNP 425586 425586 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold408 SAMTools SNP 426054 426054 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold408 SAMTools SNP 426088 426088 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.058%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold408 SAMTools SNP 429663 429663 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold408 SAMTools SNP 429782 429782 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold408 SAMTools SNP 429985 429985 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold408 SAMTools SNP 430141 430141 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C8%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.11%2C2.9e-26%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C245:56 scaffold408 SAMTools SNP 438206 438206 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold408 SAMTools SNP 438727 438727 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold408 SAMTools SNP 438760 438760 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold408 SAMTools SNP 439546 439546 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 439901 439901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 440339 440339 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold408 SAMTools SNP 441118 441118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold408 SAMTools SNP 441155 441155 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold408 SAMTools SNP 445810 445810 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.49%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold408 SAMTools SNP 445818 445818 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.00033%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold408 SAMTools SNP 445872 445872 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.14%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold408 SAMTools SNP 445915 445915 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C75%2C0:99 scaffold408 SAMTools SNP 446260 446260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold408 SAMTools SNP 446261 446261 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold408 SAMTools SNP 446344 446344 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C217:99 scaffold408 SAMTools SNP 446874 446874 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold408 SAMTools SNP 446929 446929 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold408 SAMTools SNP 447980 447980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold408 SAMTools SNP 448015 448015 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold408 SAMTools SNP 450355 450355 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold408 SAMTools SNP 450384 450384 98.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C15%2C0:27 scaffold408 SAMTools SNP 451452 451452 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C83%2C6%2C14%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.59%2C0.34%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold408 SAMTools SNP 451837 451837 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C22%2C3%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.42%2C0.37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold408 SAMTools SNP 451864 451864 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C36%2C7%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold408 SAMTools SNP 452296 452296 55.8 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold408 SAMTools SNP 452299 452299 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C153:77 scaffold408 SAMTools SNP 452827 452827 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold408 SAMTools SNP 453538 453538 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold408 SAMTools SNP 454741 454741 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.8e-07%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold408 SAMTools SNP 455385 455385 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C52%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold408 SAMTools SNP 455400 455400 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold408 SAMTools SNP 456094 456094 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C76:79 scaffold408 SAMTools SNP 456146 456146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold408 SAMTools SNP 456326 456326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold408 SAMTools SNP 457695 457695 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 461150 461150 28.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold408 SAMTools SNP 461567 461567 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C32:35 scaffold408 SAMTools SNP 465884 465884 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C42%2C0:81 scaffold408 SAMTools SNP 480400 480400 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.47%3BPV4%3D0.4%2C8.4e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C35:38 scaffold408 SAMTools SNP 482074 482074 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold408 SAMTools SNP 482343 482343 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 482352 482352 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 487590 487590 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold408 SAMTools SNP 487796 487796 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 491838 491838 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold408 SAMTools SNP 491973 491973 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.061%2C0.0028%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold408 SAMTools SNP 491994 491994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold408 SAMTools SNP 493197 493197 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold408 SAMTools SNP 493221 493221 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold408 SAMTools SNP 493236 493236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold408 SAMTools SNP 493411 493411 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 493752 493752 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 493860 493860 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold408 SAMTools SNP 494341 494341 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 495032 495032 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold408 SAMTools SNP 495089 495089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold408 SAMTools SNP 495597 495597 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold408 SAMTools SNP 495634 495634 150 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C51%2C0%2C174%2C11%2C165:99 scaffold408 SAMTools SNP 496805 496805 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold408 SAMTools SNP 497787 497787 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C18%2C0:33 scaffold408 SAMTools SNP 497827 497827 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C18%2C0:33 scaffold408 SAMTools SNP 499043 499043 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 504338 504338 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C187:99 scaffold408 SAMTools SNP 505078 505078 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold408 SAMTools SNP 505924 505924 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.024%2C1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold408 SAMTools SNP 507751 507751 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 508088 508088 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold408 SAMTools SNP 508159 508159 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold408 SAMTools SNP 508386 508386 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 522980 522980 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold408 SAMTools SNP 523112 523112 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold408 SAMTools SNP 523168 523168 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold408 SAMTools SNP 525155 525155 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 529198 529198 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 544573 544573 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 545346 545346 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold408 SAMTools SNP 545816 545816 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold408 SAMTools SNP 546290 546290 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C237:99 scaffold408 SAMTools SNP 547149 547149 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C50%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 547170 547170 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C11%2C35%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.066%2C0.19%2C1%2C3.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold408 SAMTools SNP 548075 548075 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C53%2C2%2C18%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.34%2C0.19%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold408 SAMTools SNP 548077 548077 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 548682 548682 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 548684 548684 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 548837 548837 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C33%2C0:63 scaffold408 SAMTools SNP 549136 549136 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0017%2C2.3e-15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold408 SAMTools SNP 549311 549311 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C78%2C0:99 scaffold408 SAMTools SNP 549340 549340 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C69%2C0:99 scaffold408 SAMTools SNP 550855 550855 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold408 SAMTools SNP 562583 562583 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold408 SAMTools SNP 562597 562597 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold408 SAMTools SNP 563810 563810 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0096%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold408 SAMTools SNP 563815 563815 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold408 SAMTools SNP 563901 563901 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold408 SAMTools SNP 569722 569722 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold408 SAMTools SNP 569963 569963 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.11%2C0.34%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold408 SAMTools SNP 570082 570082 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 570575 570575 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C41%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 570578 570578 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C5%2C36%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 570594 570594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C5%2C47%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 573883 573883 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold408 SAMTools SNP 574614 574614 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 577402 577402 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold408 SAMTools SNP 577586 577586 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold408 SAMTools SNP 577642 577642 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold408 SAMTools SNP 578200 578200 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 582262 582262 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold408 SAMTools SNP 582325 582325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 582453 582453 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold408 SAMTools SNP 583912 583912 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold408 SAMTools SNP 589175 589175 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C50%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold408 SAMTools SNP 595425 595425 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C167:31 scaffold408 SAMTools SNP 595591 595591 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold408 SAMTools SNP 596077 596077 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold408 SAMTools SNP 596550 596550 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold408 SAMTools SNP 596595 596595 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold408 SAMTools SNP 596789 596789 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C7%2C22%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold408 SAMTools SNP 596805 596805 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C7%2C22%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold408 SAMTools SNP 596918 596918 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C42%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.43%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 599369 599369 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold408 SAMTools SNP 601176 601176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 601296 601296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold408 SAMTools SNP 601311 601311 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold408 SAMTools SNP 601481 601481 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.39%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 601643 601643 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C41%2C1%2C13%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold408 SAMTools SNP 601670 601670 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C28%2C2%2C12%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.00024%2C0.089%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold408 SAMTools SNP 602103 602103 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold408 SAMTools SNP 602868 602868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold408 SAMTools SNP 602880 602880 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.3e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold408 SAMTools SNP 602907 602907 222 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0%2C253%2C4%2C250:51 scaffold408 SAMTools SNP 603235 603235 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold408 SAMTools SNP 603324 603324 94.1 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0%2C117%2C2%2C114:39 scaffold408 SAMTools SNP 605242 605242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.013%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 605715 605715 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold408 SAMTools SNP 607677 607677 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.0028%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 608089 608089 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 608120 608120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 624424 624424 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold408 SAMTools SNP 625424 625424 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold408 SAMTools SNP 625802 625802 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold408 SAMTools SNP 627394 627394 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C13%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.56%2C5.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C203:99 scaffold408 SAMTools SNP 627659 627659 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 630106 630106 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold408 SAMTools SNP 630634 630634 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C172:99 scaffold408 SAMTools SNP 632421 632421 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C149:99 scaffold408 SAMTools SNP 633009 633009 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold408 SAMTools SNP 636544 636544 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold408 SAMTools SNP 637831 637831 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold408 SAMTools SNP 648458 648458 36.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold408 SAMTools SNP 650893 650893 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold408 SAMTools SNP 650911 650911 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold408 SAMTools SNP 652250 652250 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C3%2C0:6 scaffold408 SAMTools SNP 652257 652257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold408 SAMTools SNP 652865 652865 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0027%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold408 SAMTools SNP 652870 652870 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C0.022%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold408 SAMTools SNP 652914 652914 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C5.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold408 SAMTools SNP 652982 652982 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D1%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C76:79 scaffold408 SAMTools SNP 652988 652988 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold408 SAMTools SNP 653498 653498 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold408 SAMTools SNP 654651 654651 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 654690 654690 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold408 SAMTools SNP 655923 655923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 656307 656307 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold408 SAMTools SNP 656652 656652 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold408 SAMTools SNP 656663 656663 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold408 SAMTools SNP 656692 656692 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold408 SAMTools SNP 656970 656970 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold408 SAMTools SNP 657021 657021 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold408 SAMTools SNP 658746 658746 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 658905 658905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 658928 658928 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.51%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold408 SAMTools SNP 670278 670278 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold408 SAMTools SNP 672720 672720 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 672762 672762 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.62%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C227:99 scaffold408 SAMTools SNP 682905 682905 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold408 SAMTools SNP 775106 775106 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold408 SAMTools SNP 775141 775141 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold408 SAMTools SNP 775222 775222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold408 SAMTools SNP 776759 776759 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 777149 777149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C36%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D9.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold408 SAMTools SNP 777209 777209 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.021%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold408 SAMTools SNP 777257 777257 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C18%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold408 SAMTools SNP 777296 777296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold408 SAMTools SNP 777785 777785 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold408 SAMTools SNP 777812 777812 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold408 SAMTools SNP 777842 777842 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold408 SAMTools SNP 778445 778445 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 778470 778470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.17%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 778518 778518 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 779414 779414 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold408 SAMTools SNP 779486 779486 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.07%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C186:99 scaffold408 SAMTools SNP 781012 781012 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold408 SAMTools SNP 781030 781030 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.19%2C0.19%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold408 SAMTools SNP 781105 781105 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C24%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.5%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold408 SAMTools SNP 781971 781971 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C18%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold408 SAMTools SNP 782431 782431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C2%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold408 SAMTools SNP 782647 782647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C7%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold408 SAMTools SNP 782674 782674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold408 SAMTools SNP 782695 782695 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C3%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.35%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold408 SAMTools SNP 783968 783968 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold408 SAMTools SNP 784969 784969 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.2%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold408 SAMTools SNP 784972 784972 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.45%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold408 SAMTools SNP 786294 786294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold408 SAMTools SNP 787983 787983 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.62%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold408 SAMTools SNP 788045 788045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold408 SAMTools SNP 788298 788298 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold408 SAMTools SNP 788307 788307 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C0.011%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold408 SAMTools SNP 788585 788585 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold408 SAMTools SNP 788588 788588 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold408 SAMTools SNP 788667 788667 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 788924 788924 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold408 SAMTools SNP 788994 788994 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold408 SAMTools SNP 789464 789464 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold408 SAMTools SNP 789529 789529 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.6%2C0.034%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold408 SAMTools SNP 789551 789551 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold408 SAMTools SNP 789900 789900 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold408 SAMTools SNP 790206 790206 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold408 SAMTools SNP 792191 792191 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.067%2C0.0024%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C227:87 scaffold408 SAMTools SNP 801605 801605 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.98%3BPV4%3D1%2C0.00051%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold408 SAMTools SNP 801944 801944 45.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold408 SAMTools SNP 801980 801980 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.7e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C71:39 scaffold408 SAMTools SNP 805744 805744 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C101%2C12%2C66%3BMQ%3D14%3BFQ%3D37%3BPV4%3D0.0013%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C64:67 scaffold408 SAMTools SNP 812963 812963 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 812967 812967 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 813019 813019 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold408 SAMTools SNP 814111 814111 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold408 SAMTools SNP 817184 817184 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40808 SAMTools SNP 30640 30640 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C39%2C0:75 scaffold40808 SAMTools SNP 30711 30711 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold40808 SAMTools SNP 31262 31262 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold40808 SAMTools SNP 85546 85546 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40808 SAMTools SNP 93561 93561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40820 SAMTools SNP 484 484 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40820 SAMTools SNP 3157 3157 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40820 SAMTools SNP 3731 3731 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C230:99 scaffold40820 SAMTools SNP 4944 4944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C63%2C19%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C0.054%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 4971 4971 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C72%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C0.089%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 9097 9097 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 10002 10002 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold40820 SAMTools SNP 10065 10065 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 10097 10097 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold40820 SAMTools SNP 10296 10296 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold40820 SAMTools SNP 10692 10692 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40820 SAMTools SNP 10836 10836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C39%2C46%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 10986 10986 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C29%2C19%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 12006 12006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C59%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 12059 12059 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.25%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold40820 SAMTools SNP 12114 12114 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 12150 12150 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 13494 13494 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold40820 SAMTools SNP 13497 13497 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold40820 SAMTools SNP 13528 13528 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40820 SAMTools SNP 13651 13651 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold40820 SAMTools SNP 15431 15431 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C44%3BMQ%3D49%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C157%2C0:99 scaffold40820 SAMTools SNP 16820 16820 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C132%2C0:99 scaffold40820 SAMTools SNP 16870 16870 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold40820 SAMTools SNP 18098 18098 88.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold40820 SAMTools SNP 18716 18716 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40820 SAMTools SNP 18782 18782 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40820 SAMTools SNP 18827 18827 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40820 SAMTools SNP 19091 19091 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C42%2C0:67 scaffold40820 SAMTools SNP 20483 20483 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold40820 SAMTools SNP 21793 21793 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C250:99 scaffold40820 SAMTools SNP 26974 26974 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.43%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold40820 SAMTools SNP 27294 27294 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold40820 SAMTools SNP 27322 27322 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold40820 SAMTools SNP 27681 27681 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40820 SAMTools SNP 28490 28490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40820 SAMTools SNP 28565 28565 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40820 SAMTools SNP 28580 28580 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.13%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold40820 SAMTools SNP 28598 28598 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40820 SAMTools SNP 29890 29890 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C48%2C0:93 scaffold40820 SAMTools SNP 31627 31627 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0019%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40820 SAMTools SNP 34215 34215 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3462%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1063%2C1673%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.52%2C1%2C0.36%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 34392 34392 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2873%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C1866%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 34450 34450 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1359%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D368%2C554%2C90%2C142%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold40820 SAMTools SNP 34465 34465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D996%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C168%2C610%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 34680 34680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2512%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C49%2C39%3BMQ%3D50%3BFQ%3D-262%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold40820 SAMTools SNP 34731 34731 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2035%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C47%2C274%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 34758 34758 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1951%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C102%2C1727%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 35070 35070 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C155%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C3.9e-11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 35073 35073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold40820 SAMTools SNP 35091 35091 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C7%2C141%3BMQ%3D49%3BFQ%3D-271%3BPV4%3D1%2C0.11%2C0.31%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold40820 SAMTools SNP 35424 35424 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1819%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1170%2C65%2C582%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1.9e-10%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold40820 SAMTools SNP 36836 36836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C35%2C193%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.4e-15%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 37034 37034 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C325%2C10%3BMQ%3D50%3BFQ%3D32%3BPV4%3D3.8e-31%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold40820 SAMTools SNP 37037 37037 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C179%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-38%2C1%2C1%2C3.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 41016 41016 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold40820 SAMTools SNP 41610 41610 22.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C24%2C0:41 scaffold40820 SAMTools SNP 41695 41695 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold40820 SAMTools SNP 41838 41838 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40820 SAMTools SNP 42302 42302 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold40820 SAMTools SNP 42391 42391 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold40820 SAMTools SNP 43645 43645 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold40820 SAMTools SNP 43992 43992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.044%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 47039 47039 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.66%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold40820 SAMTools SNP 47050 47050 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold40820 SAMTools SNP 48055 48055 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 48122 48122 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40820 SAMTools SNP 48598 48598 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.077%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 49111 49111 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C11%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.59%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold40820 SAMTools SNP 49335 49335 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C19%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold40820 SAMTools SNP 49686 49686 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C27%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.65%2C2.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold40820 SAMTools SNP 49719 49719 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C81%2C0:99 scaffold40820 SAMTools SNP 50595 50595 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 58030 58030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C47%2C16%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 58063 58063 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C21%2C69%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.28%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 62892 62892 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C22%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C178:99 scaffold40820 SAMTools SNP 63200 63200 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold40820 SAMTools SNP 64837 64837 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C85:57 scaffold40820 SAMTools SNP 65155 65155 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C6.2e-22%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C237:99 scaffold40820 SAMTools SNP 66578 66578 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C18%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 67077 67077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C46%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 67840 67840 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C46%2C38%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.24%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 68644 68644 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C54%2C148%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1.5e-10%2C2.3e-95%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold40820 SAMTools SNP 69200 69200 3.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold40820 SAMTools SNP 69976 69976 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C21%2C0:39 scaffold40820 SAMTools SNP 75919 75919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold40820 SAMTools SNP 76015 76015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 76357 76357 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold40820 SAMTools SNP 76396 76396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold40820 SAMTools SNP 76795 76795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40820 SAMTools SNP 76804 76804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40820 SAMTools SNP 77100 77100 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C190%2C0:99 scaffold40820 SAMTools SNP 78960 78960 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold40820 SAMTools SNP 79961 79961 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C253:51 scaffold40820 SAMTools SNP 80069 80069 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40820 SAMTools SNP 80235 80235 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40820 SAMTools SNP 80238 80238 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40820 SAMTools SNP 80413 80413 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40820 SAMTools SNP 80417 80417 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40820 SAMTools SNP 81235 81235 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C69%2C0:99 scaffold40820 SAMTools SNP 81306 81306 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold40820 SAMTools SNP 82550 82550 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold40820 SAMTools SNP 82815 82815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C78%2C4%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 82863 82863 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C5%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold40820 SAMTools SNP 83130 83130 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C9%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.71%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold40820 SAMTools SNP 83142 83142 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C9%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold40820 SAMTools SNP 83277 83277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C91%2C11%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 84388 84388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C25%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40820 SAMTools SNP 84706 84706 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40820 SAMTools SNP 85486 85486 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D40%3BFQ%3D42%3BPV4%3D1%2C0.017%2C0.0011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C184:72 scaffold40820 SAMTools SNP 85516 85516 21.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold40822 SAMTools SNP 596 596 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40822 SAMTools SNP 727 727 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40822 SAMTools SNP 14337 14337 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40822 SAMTools SNP 23887 23887 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40822 SAMTools SNP 28788 28788 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold40828 SAMTools SNP 4813 4813 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 4928 4928 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 5577 5577 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold40828 SAMTools SNP 6189 6189 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold40828 SAMTools SNP 6434 6434 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C72%2C0:97 scaffold40828 SAMTools SNP 48921 48921 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40828 SAMTools SNP 50036 50036 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40828 SAMTools SNP 50429 50429 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40828 SAMTools SNP 50457 50457 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40828 SAMTools SNP 53579 53579 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 59665 59665 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 59729 59729 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 60967 60967 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 61469 61469 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40828 SAMTools SNP 61524 61524 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 61928 61928 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40828 SAMTools SNP 61959 61959 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold40828 SAMTools SNP 61989 61989 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40828 SAMTools SNP 62729 62729 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40828 SAMTools SNP 62780 62780 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40828 SAMTools SNP 63019 63019 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40828 SAMTools SNP 64010 64010 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 2226 2226 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40832 SAMTools SNP 2278 2278 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold40832 SAMTools SNP 3179 3179 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C7%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold40832 SAMTools SNP 3549 3549 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40832 SAMTools SNP 3613 3613 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold40832 SAMTools SNP 3657 3657 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40832 SAMTools SNP 3706 3706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 4698 4698 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold40832 SAMTools SNP 5149 5149 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C49%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold40832 SAMTools SNP 5171 5171 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold40832 SAMTools SNP 5188 5188 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00055%2C1%2C1%2C9.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold40832 SAMTools SNP 5344 5344 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0014%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold40832 SAMTools SNP 5353 5353 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C182:99 scaffold40832 SAMTools SNP 5381 5381 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40832 SAMTools SNP 5413 5413 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40832 SAMTools SNP 5420 5420 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold40832 SAMTools SNP 5987 5987 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40832 SAMTools SNP 6195 6195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40832 SAMTools SNP 6219 6219 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold40832 SAMTools SNP 6264 6264 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40832 SAMTools SNP 6434 6434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40832 SAMTools SNP 6656 6656 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40832 SAMTools SNP 7049 7049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 7075 7075 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40832 SAMTools SNP 7085 7085 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40832 SAMTools SNP 7599 7599 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 9542 9542 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold40832 SAMTools SNP 9655 9655 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold40832 SAMTools SNP 10671 10671 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold40832 SAMTools SNP 10680 10680 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold40832 SAMTools SNP 14996 14996 54.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold40832 SAMTools SNP 15318 15318 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 15319 15319 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 23855 23855 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40832 SAMTools SNP 29813 29813 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40832 SAMTools SNP 32037 32037 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 32284 32284 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C5%2C12%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.54%2C0.35%2C0.15%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 32915 32915 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold40832 SAMTools SNP 32966 32966 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40832 SAMTools SNP 32970 32970 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40832 SAMTools SNP 33147 33147 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40832 SAMTools SNP 33149 33149 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40832 SAMTools SNP 33656 33656 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 35143 35143 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40832 SAMTools SNP 35340 35340 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40832 SAMTools SNP 35356 35356 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40832 SAMTools SNP 35360 35360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40832 SAMTools SNP 35829 35829 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40832 SAMTools SNP 35856 35856 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.017%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold40832 SAMTools SNP 36549 36549 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 36567 36567 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.087%2C0.41%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold40832 SAMTools SNP 36591 36591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.049%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold40832 SAMTools SNP 36829 36829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C6%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold40832 SAMTools SNP 38548 38548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 38557 38557 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 40014 40014 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold40832 SAMTools SNP 40223 40223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold40832 SAMTools SNP 43596 43596 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D6.88%3BPV4%3D1%2C4e-19%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C33:36 scaffold40832 SAMTools SNP 43817 43817 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C78%2C0:99 scaffold40832 SAMTools SNP 45004 45004 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold40832 SAMTools SNP 45039 45039 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40832 SAMTools SNP 45390 45390 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40832 SAMTools SNP 47466 47466 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40832 SAMTools SNP 47485 47485 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40832 SAMTools SNP 50456 50456 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold40832 SAMTools SNP 53598 53598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40832 SAMTools SNP 53615 53615 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40832 SAMTools SNP 55292 55292 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold40832 SAMTools SNP 59243 59243 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40832 SAMTools SNP 60030 60030 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold40832 SAMTools SNP 60165 60165 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold40832 SAMTools SNP 60893 60893 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40832 SAMTools SNP 61587 61587 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 62705 62705 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C100:33 scaffold40832 SAMTools SNP 63476 63476 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 63515 63515 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40832 SAMTools SNP 64368 64368 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40832 SAMTools SNP 64403 64403 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40832 SAMTools SNP 66466 66466 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40832 SAMTools SNP 76024 76024 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C2.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C225:46 scaffold40832 SAMTools SNP 84628 84628 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40832 SAMTools SNP 84996 84996 29.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold40832 SAMTools SNP 88730 88730 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold40836 SAMTools SNP 10334 10334 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40836 SAMTools SNP 10335 10335 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40836 SAMTools SNP 14276 14276 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40836 SAMTools SNP 19826 19826 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40836 SAMTools SNP 28107 28107 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40836 SAMTools SNP 41186 41186 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40836 SAMTools SNP 41204 41204 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold40836 SAMTools SNP 41412 41412 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D75.8%3BPV4%3D1%2C0.13%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C104:99 scaffold40836 SAMTools SNP 41439 41439 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold40836 SAMTools SNP 41860 41860 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold40836 SAMTools SNP 42181 42181 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold40836 SAMTools SNP 42967 42967 57.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold40836 SAMTools SNP 43811 43811 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold40836 SAMTools SNP 43975 43975 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.16%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C141:48 scaffold40836 SAMTools SNP 44264 44264 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C201:72 scaffold40836 SAMTools SNP 44268 44268 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold40836 SAMTools SNP 44379 44379 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C24%2C0:45 scaffold40836 SAMTools SNP 44560 44560 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D46%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40836 SAMTools SNP 44609 44609 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D47%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40836 SAMTools SNP 44618 44618 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D47%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40836 SAMTools SNP 52828 52828 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40836 SAMTools SNP 52859 52859 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold40836 SAMTools SNP 53111 53111 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold40836 SAMTools SNP 58256 58256 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D57.8%3BPV4%3D0.2%2C5.6e-13%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C99:88 scaffold40836 SAMTools SNP 60224 60224 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold40836 SAMTools SNP 64267 64267 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold40836 SAMTools SNP 68302 68302 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40836 SAMTools SNP 75082 75082 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C16%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.064%2C0.5%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold40836 SAMTools SNP 75103 75103 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C169:99 scaffold40836 SAMTools SNP 75124 75124 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40836 SAMTools SNP 76491 76491 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C17%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C238:99 scaffold40836 SAMTools SNP 77384 77384 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C11%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.21%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold40836 SAMTools SNP 77643 77643 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.027%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold40836 SAMTools SNP 77665 77665 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40836 SAMTools SNP 78199 78199 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C233:36 scaffold40836 SAMTools SNP 78725 78725 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold40836 SAMTools SNP 79230 79230 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D47%3BFQ%3D50%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C177:80 scaffold40836 SAMTools SNP 79983 79983 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.14%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C251:99 scaffold40836 SAMTools SNP 80166 80166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40836 SAMTools SNP 91093 91093 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40836 SAMTools SNP 91117 91117 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold40836 SAMTools SNP 92114 92114 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40836 SAMTools SNP 93804 93804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C39%2C24%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1.9e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40836 SAMTools SNP 94901 94901 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C17%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.28%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold40836 SAMTools SNP 96191 96191 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold40836 SAMTools SNP 96245 96245 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40856 SAMTools SNP 1388 1388 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40856 SAMTools SNP 1543 1543 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold40856 SAMTools SNP 29321 29321 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40856 SAMTools SNP 29359 29359 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold40856 SAMTools SNP 33468 33468 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40856 SAMTools SNP 33473 33473 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40856 SAMTools SNP 33488 33488 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40856 SAMTools SNP 34169 34169 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C5%2C76%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40856 SAMTools SNP 34750 34750 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40856 SAMTools SNP 43000 43000 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C3%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold40856 SAMTools SNP 44610 44610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C198%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40856 SAMTools SNP 45280 45280 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C12%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold40856 SAMTools SNP 48956 48956 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold40856 SAMTools SNP 53475 53475 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40856 SAMTools SNP 76685 76685 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C0:6 scaffold40856 SAMTools SNP 82862 82862 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold40856 SAMTools SNP 82909 82909 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold40856 SAMTools SNP 85609 85609 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40856 SAMTools SNP 85651 85651 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C16:19 scaffold40856 SAMTools SNP 87233 87233 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40856 SAMTools SNP 87260 87260 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold40856 SAMTools SNP 87860 87860 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 795 795 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 2325 2325 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40868 SAMTools SNP 15947 15947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 33440 33440 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40868 SAMTools SNP 35851 35851 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold40868 SAMTools SNP 36169 36169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 36248 36248 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40868 SAMTools SNP 38091 38091 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold40868 SAMTools SNP 38118 38118 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C152:99 scaffold40868 SAMTools SNP 46842 46842 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40868 SAMTools SNP 50070 50070 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold40868 SAMTools SNP 75290 75290 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40868 SAMTools SNP 76346 76346 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 76887 76887 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40868 SAMTools SNP 76917 76917 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40868 SAMTools SNP 76935 76935 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40868 SAMTools SNP 78115 78115 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40868 SAMTools SNP 78486 78486 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40868 SAMTools SNP 78709 78709 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40868 SAMTools SNP 78909 78909 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40868 SAMTools SNP 98923 98923 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold40874 SAMTools SNP 6457 6457 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 6494 6494 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 6578 6578 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 7034 7034 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40874 SAMTools SNP 7105 7105 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold40874 SAMTools SNP 23795 23795 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40874 SAMTools SNP 23798 23798 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40874 SAMTools SNP 23841 23841 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40874 SAMTools SNP 26346 26346 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C96%2C45%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C4.9e-97%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40874 SAMTools SNP 26367 26367 82.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C15%2C0:27 scaffold40874 SAMTools SNP 29147 29147 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C30%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.47%2C3.7e-57%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold40874 SAMTools SNP 29192 29192 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.025%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold40874 SAMTools SNP 29758 29758 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40874 SAMTools SNP 29786 29786 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold40874 SAMTools SNP 29822 29822 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.28%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold40874 SAMTools SNP 30406 30406 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.55%2C0.018%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40874 SAMTools SNP 30469 30469 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.019%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold40874 SAMTools SNP 30499 30499 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40874 SAMTools SNP 37577 37577 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40874 SAMTools SNP 37913 37913 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold40874 SAMTools SNP 38203 38203 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40874 SAMTools SNP 39066 39066 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 39097 39097 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 39434 39434 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40874 SAMTools SNP 39686 39686 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold40874 SAMTools SNP 40137 40137 138 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C47%2C35%2C165%2C0%2C162:21 scaffold40874 SAMTools SNP 40534 40534 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C173:99 scaffold40874 SAMTools SNP 40641 40641 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C221:99 scaffold40874 SAMTools SNP 40934 40934 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40874 SAMTools SNP 41451 41451 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40874 SAMTools SNP 41471 41471 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40874 SAMTools SNP 41512 41512 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 42428 42428 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.31%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold40874 SAMTools SNP 42447 42447 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40874 SAMTools SNP 43783 43783 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 47821 47821 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 47887 47887 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 50691 50691 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 52887 52887 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40874 SAMTools SNP 53307 53307 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40874 SAMTools SNP 53329 53329 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40874 SAMTools SNP 53952 53952 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 54027 54027 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 54612 54612 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold40874 SAMTools SNP 54673 54673 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C85:34 scaffold40874 SAMTools SNP 56254 56254 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40874 SAMTools SNP 57625 57625 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold40874 SAMTools SNP 57961 57961 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 58231 58231 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0126%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40874 SAMTools SNP 60618 60618 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00028%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40874 SAMTools SNP 60633 60633 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40874 SAMTools SNP 60657 60657 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 69479 69479 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 69487 69487 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 69635 69635 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold40874 SAMTools SNP 70925 70925 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40874 SAMTools SNP 71058 71058 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40874 SAMTools SNP 71470 71470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 72314 72314 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 76661 76661 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold40874 SAMTools SNP 76707 76707 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.25%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C86:49 scaffold40874 SAMTools SNP 78214 78214 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40874 SAMTools SNP 78415 78415 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.3%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold40874 SAMTools SNP 78421 78421 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40874 SAMTools SNP 78857 78857 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 79260 79260 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40874 SAMTools SNP 79561 79561 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C241:99 scaffold40874 SAMTools SNP 81925 81925 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40874 SAMTools SNP 82309 82309 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40874 SAMTools SNP 82436 82436 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40874 SAMTools SNP 87022 87022 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold40874 SAMTools SNP 87025 87025 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold40874 SAMTools SNP 88049 88049 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.17%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C191:99 scaffold40874 SAMTools SNP 88931 88931 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold40874 SAMTools SNP 88949 88949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40874 SAMTools SNP 89192 89192 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.24%2C0.16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C252:99 scaffold40874 SAMTools SNP 89515 89515 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold40874 SAMTools SNP 90130 90130 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold40874 SAMTools SNP 90392 90392 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold40874 SAMTools SNP 95019 95019 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold40874 SAMTools SNP 95073 95073 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.53%2C9.6e-09%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold40874 SAMTools SNP 95076 95076 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.53%2C7.3e-10%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40874 SAMTools SNP 95091 95091 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.27%2C7.8e-23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C200:99 scaffold40874 SAMTools SNP 95554 95554 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold40874 SAMTools SNP 95595 95595 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40874 SAMTools SNP 95607 95607 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 95730 95730 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 96252 96252 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold40874 SAMTools SNP 97080 97080 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.45%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C160:99 scaffold40874 SAMTools SNP 97360 97360 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.44%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C204:99 scaffold40874 SAMTools SNP 97634 97634 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.12%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold40874 SAMTools SNP 97665 97665 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40874 SAMTools SNP 97688 97688 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 98343 98343 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40874 SAMTools SNP 98907 98907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40874 SAMTools SNP 98921 98921 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40894 SAMTools SNP 17378 17378 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40894 SAMTools SNP 20462 20462 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold40894 SAMTools SNP 20468 20468 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold40894 SAMTools SNP 20584 20584 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D38%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C48%2C0:93 scaffold40894 SAMTools SNP 21498 21498 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40894 SAMTools SNP 21501 21501 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40894 SAMTools SNP 21803 21803 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D48%3BFQ%3D86%3BPV4%3D1%2C1%2C0.1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C240:99 scaffold40894 SAMTools SNP 32012 32012 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40894 SAMTools SNP 35096 35096 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40894 SAMTools SNP 40740 40740 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40894 SAMTools SNP 41596 41596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40894 SAMTools SNP 41638 41638 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold40894 SAMTools SNP 43174 43174 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40894 SAMTools SNP 43416 43416 189 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold40894 SAMTools SNP 43468 43468 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold40894 SAMTools SNP 50107 50107 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40894 SAMTools SNP 50110 50110 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D83.9%3BPV4%3D0.44%2C0.08%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C128:99 scaffold40894 SAMTools SNP 54147 54147 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold40894 SAMTools SNP 56531 56531 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40894 SAMTools SNP 58180 58180 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold40894 SAMTools SNP 58772 58772 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C8%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0067%2C0.42%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold40894 SAMTools SNP 60667 60667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C31%2C13%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40894 SAMTools SNP 61601 61601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40894 SAMTools SNP 61655 61655 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40894 SAMTools SNP 61862 61862 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40894 SAMTools SNP 62110 62110 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold40894 SAMTools SNP 62151 62151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold40894 SAMTools SNP 65173 65173 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C23%2C17%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold40894 SAMTools SNP 65188 65188 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C16%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold40894 SAMTools SNP 65428 65428 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C87%2C0:99 scaffold40894 SAMTools SNP 65556 65556 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C33%2C0:63 scaffold40894 SAMTools SNP 66378 66378 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold40894 SAMTools SNP 70189 70189 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold40894 SAMTools SNP 71117 71117 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40894 SAMTools SNP 71910 71910 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40894 SAMTools SNP 72069 72069 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold40894 SAMTools SNP 73019 73019 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C30:33 scaffold40894 SAMTools SNP 73043 73043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold40894 SAMTools SNP 73554 73554 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40894 SAMTools SNP 74182 74182 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.43%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C163:28 scaffold40894 SAMTools SNP 74829 74829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40894 SAMTools SNP 82059 82059 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C255%2C0:99 scaffold40894 SAMTools SNP 91374 91374 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.43%2C1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C160:99 scaffold40894 SAMTools SNP 91575 91575 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C36%2C0:69 scaffold40894 SAMTools SNP 91788 91788 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.1e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C218:43 scaffold40894 SAMTools SNP 91845 91845 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C9.7e-26%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C234:46 scaffold40894 SAMTools SNP 92675 92675 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.43%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C185:62 scaffold40894 SAMTools SNP 94202 94202 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C8.8e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C158:69 scaffold40894 SAMTools SNP 95023 95023 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold409 SAMTools SNP 1007 1007 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold409 SAMTools SNP 1775 1775 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold409 SAMTools SNP 1903 1903 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold409 SAMTools SNP 60405 60405 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold409 SAMTools SNP 65970 65970 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold409 SAMTools SNP 69126 69126 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C255%2C0:99 scaffold409 SAMTools SNP 69153 69153 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold409 SAMTools SNP 69179 69179 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C1%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C0.31%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold409 SAMTools SNP 70788 70788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold409 SAMTools SNP 71632 71632 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold409 SAMTools SNP 71638 71638 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold409 SAMTools SNP 74946 74946 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.27%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C201:99 scaffold409 SAMTools SNP 75045 75045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C14%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold409 SAMTools SNP 76141 76141 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold409 SAMTools SNP 76174 76174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold409 SAMTools SNP 76415 76415 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold409 SAMTools SNP 76425 76425 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold409 SAMTools SNP 77209 77209 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold409 SAMTools SNP 84923 84923 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold409 SAMTools SNP 90131 90131 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold409 SAMTools SNP 90162 90162 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold409 SAMTools SNP 90597 90597 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C29:32 scaffold409 SAMTools SNP 90621 90621 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold409 SAMTools SNP 90623 90623 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold409 SAMTools SNP 93166 93166 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40910 SAMTools SNP 842 842 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40910 SAMTools SNP 866 866 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40910 SAMTools SNP 2870 2870 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40910 SAMTools SNP 4975 4975 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40910 SAMTools SNP 5032 5032 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold40910 SAMTools SNP 5762 5762 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold40910 SAMTools SNP 8068 8068 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40910 SAMTools SNP 9376 9376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40910 SAMTools SNP 9377 9377 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40910 SAMTools SNP 16335 16335 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold40910 SAMTools SNP 23225 23225 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40910 SAMTools SNP 24814 24814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40910 SAMTools SNP 24839 24839 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold40910 SAMTools SNP 25594 25594 120 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C84%2C0%2C148%2C65%2C145:99 scaffold40910 SAMTools SNP 26417 26417 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold40910 SAMTools SNP 26631 26631 45.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold40910 SAMTools SNP 26861 26861 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C19%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.31%2C6.8e-46%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold40910 SAMTools SNP 36352 36352 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40910 SAMTools SNP 36373 36373 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold40910 SAMTools SNP 36786 36786 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold40910 SAMTools SNP 36946 36946 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold40910 SAMTools SNP 37323 37323 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40910 SAMTools SNP 37347 37347 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40910 SAMTools SNP 37368 37368 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40910 SAMTools SNP 37691 37691 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40910 SAMTools SNP 38443 38443 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C177:48 scaffold40910 SAMTools SNP 38720 38720 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 38822 38822 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold40910 SAMTools SNP 40209 40209 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C54%2C1%2C17%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.011%2C1%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold40910 SAMTools SNP 40452 40452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C54%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold40910 SAMTools SNP 40491 40491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold40910 SAMTools SNP 40578 40578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C32%2C54%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-07%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 40579 40579 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C3%2C40%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-06%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 41341 41341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40910 SAMTools SNP 42005 42005 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C116%2C23%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 42408 42408 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40910 SAMTools SNP 43709 43709 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40910 SAMTools SNP 45959 45959 8.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold40910 SAMTools SNP 46192 46192 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C54%2C0:77 scaffold40910 SAMTools SNP 49105 49105 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C254:99 scaffold40910 SAMTools SNP 49730 49730 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C153:99 scaffold40910 SAMTools SNP 50602 50602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40910 SAMTools SNP 51138 51138 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.04%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C71:74 scaffold40910 SAMTools SNP 51154 51154 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C158:74 scaffold40910 SAMTools SNP 51160 51160 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C152:74 scaffold40910 SAMTools SNP 51178 51178 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40910 SAMTools SNP 51772 51772 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold40910 SAMTools SNP 51789 51789 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40910 SAMTools SNP 51817 51817 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40910 SAMTools SNP 52248 52248 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold40910 SAMTools SNP 52623 52623 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40910 SAMTools SNP 52653 52653 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40910 SAMTools SNP 54102 54102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40910 SAMTools SNP 54424 54424 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40910 SAMTools SNP 54460 54460 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold40910 SAMTools SNP 54499 54499 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold40910 SAMTools SNP 54727 54727 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40910 SAMTools SNP 54828 54828 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C196:99 scaffold40910 SAMTools SNP 55836 55836 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C193:57 scaffold40910 SAMTools SNP 55875 55875 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.034%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold40910 SAMTools SNP 55894 55894 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold40910 SAMTools SNP 55927 55927 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold40910 SAMTools SNP 56111 56111 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40910 SAMTools SNP 58652 58652 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold40910 SAMTools SNP 61619 61619 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold40910 SAMTools SNP 61637 61637 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40910 SAMTools SNP 62269 62269 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40910 SAMTools SNP 62350 62350 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C32:35 scaffold40910 SAMTools SNP 62386 62386 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40910 SAMTools SNP 63672 63672 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.044%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold40910 SAMTools SNP 63675 63675 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.044%2C0.017%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold40910 SAMTools SNP 65425 65425 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40910 SAMTools SNP 65437 65437 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40910 SAMTools SNP 65460 65460 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40910 SAMTools SNP 65473 65473 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40910 SAMTools SNP 66493 66493 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C21:24 scaffold40910 SAMTools SNP 66496 66496 38.8 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C55%2C49%2C72%2C0%2C66:10 scaffold40910 SAMTools SNP 70042 70042 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C3.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C230:67 scaffold40910 SAMTools SNP 70332 70332 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40910 SAMTools SNP 72111 72111 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold40910 SAMTools SNP 72162 72162 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold40910 SAMTools SNP 72180 72180 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold40910 SAMTools SNP 73026 73026 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold40910 SAMTools SNP 73340 73340 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.66%2C0.3%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold40910 SAMTools SNP 74942 74942 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40910 SAMTools SNP 74962 74962 196 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26%2C248%2C0%2C245:39 scaffold40910 SAMTools SNP 76599 76599 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40910 SAMTools SNP 77263 77263 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C21:24 scaffold40910 SAMTools SNP 77968 77968 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.5%2C0.052%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C185:52 scaffold40910 SAMTools SNP 78737 78737 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold40910 SAMTools SNP 78749 78749 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40910 SAMTools SNP 79075 79075 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40910 SAMTools SNP 79985 79985 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40910 SAMTools SNP 80986 80986 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40910 SAMTools SNP 85439 85439 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold40910 SAMTools SNP 86286 86286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40910 SAMTools SNP 86335 86335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold40910 SAMTools SNP 87143 87143 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold40910 SAMTools SNP 87161 87161 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C115%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40910 SAMTools SNP 87218 87218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D640%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D249%2C55%2C327%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 87616 87616 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C304%2C18%2C268%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40910 SAMTools SNP 93573 93573 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold40910 SAMTools SNP 93881 93881 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold40910 SAMTools SNP 94348 94348 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold40910 SAMTools SNP 95677 95677 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.25%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold40910 SAMTools SNP 95698 95698 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.15%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold40910 SAMTools SNP 96561 96561 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold40910 SAMTools SNP 96621 96621 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40910 SAMTools SNP 97736 97736 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold40910 SAMTools SNP 99478 99478 44.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold40910 SAMTools SNP 99492 99492 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C25%2C49%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.13%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 1574 1574 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.43%2C0.00097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold40916 SAMTools SNP 1706 1706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 2162 2162 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C21%2C0:39 scaffold40916 SAMTools SNP 2862 2862 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold40916 SAMTools SNP 7971 7971 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold40916 SAMTools SNP 8146 8146 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40916 SAMTools SNP 8423 8423 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold40916 SAMTools SNP 8566 8566 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1.7e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C26:29 scaffold40916 SAMTools SNP 9131 9131 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold40916 SAMTools SNP 9228 9228 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold40916 SAMTools SNP 9919 9919 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C39%2C0:74 scaffold40916 SAMTools SNP 11786 11786 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 11816 11816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 12551 12551 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40916 SAMTools SNP 12572 12572 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 12589 12589 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40916 SAMTools SNP 12618 12618 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold40916 SAMTools SNP 12657 12657 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40916 SAMTools SNP 13621 13621 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold40916 SAMTools SNP 13684 13684 34.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold40916 SAMTools SNP 14200 14200 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C3.5e-08%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C82:85 scaffold40916 SAMTools SNP 18794 18794 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C8.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold40916 SAMTools SNP 19446 19446 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.7%2C6.7e-16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold40916 SAMTools SNP 20433 20433 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C117%2C0:99 scaffold40916 SAMTools SNP 22280 22280 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C96%2C0:99 scaffold40916 SAMTools SNP 23408 23408 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C237:99 scaffold40916 SAMTools SNP 23420 23420 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold40916 SAMTools SNP 24706 24706 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 24720 24720 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 24927 24927 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold40916 SAMTools SNP 29292 29292 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C21%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.0095%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold40916 SAMTools SNP 32002 32002 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C18%2C0:33 scaffold40916 SAMTools SNP 32970 32970 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.036%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold40916 SAMTools SNP 33042 33042 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold40916 SAMTools SNP 33398 33398 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold40916 SAMTools SNP 33494 33494 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C177:99 scaffold40916 SAMTools SNP 33498 33498 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.54%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold40916 SAMTools SNP 33667 33667 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold40916 SAMTools SNP 33676 33676 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold40916 SAMTools SNP 34222 34222 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold40916 SAMTools SNP 34387 34387 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40916 SAMTools SNP 34427 34427 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold40916 SAMTools SNP 34448 34448 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.015%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40916 SAMTools SNP 35269 35269 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold40916 SAMTools SNP 35980 35980 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold40916 SAMTools SNP 37495 37495 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold40916 SAMTools SNP 37527 37527 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.085%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C205:99 scaffold40916 SAMTools SNP 37529 37529 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.0094%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C202:99 scaffold40916 SAMTools SNP 37579 37579 204 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.41%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C231:99 scaffold40916 SAMTools SNP 43487 43487 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.22%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold40916 SAMTools SNP 44132 44132 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 45297 45297 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40916 SAMTools SNP 45698 45698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40916 SAMTools SNP 45737 45737 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40916 SAMTools SNP 46232 46232 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40916 SAMTools SNP 46480 46480 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C226:99 scaffold40916 SAMTools SNP 48158 48158 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40916 SAMTools SNP 48911 48911 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.19%2C2.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C226:43 scaffold40916 SAMTools SNP 48977 48977 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold40916 SAMTools SNP 49010 49010 57.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold40916 SAMTools SNP 49148 49148 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C51%2C0:99 scaffold40916 SAMTools SNP 49199 49199 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C5.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40916 SAMTools SNP 49409 49409 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold40916 SAMTools SNP 49649 49649 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.058%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold40916 SAMTools SNP 49716 49716 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 50049 50049 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C241:99 scaffold40916 SAMTools SNP 50088 50088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 50520 50520 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40916 SAMTools SNP 50541 50541 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold40916 SAMTools SNP 50550 50550 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold40916 SAMTools SNP 50558 50558 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40916 SAMTools SNP 50565 50565 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.43%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold40916 SAMTools SNP 50592 50592 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.3%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold40916 SAMTools SNP 50595 50595 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.3%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold40916 SAMTools SNP 51131 51131 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.41%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold40916 SAMTools SNP 51146 51146 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold40916 SAMTools SNP 51176 51176 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold40916 SAMTools SNP 52206 52206 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold40916 SAMTools SNP 52267 52267 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold40916 SAMTools SNP 52312 52312 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40916 SAMTools SNP 57111 57111 92.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D848%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C21%2C0:39 scaffold40916 SAMTools SNP 58004 58004 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C217%2C67%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.075%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 60363 60363 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40916 SAMTools SNP 60394 60394 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40916 SAMTools SNP 60442 60442 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40916 SAMTools SNP 60652 60652 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40916 SAMTools SNP 60730 60730 42.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold40916 SAMTools SNP 61012 61012 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 61015 61015 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 61726 61726 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold40916 SAMTools SNP 62470 62470 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.28%2C2.6e-10%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C211:98 scaffold40916 SAMTools SNP 62530 62530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold40916 SAMTools SNP 62557 62557 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40916 SAMTools SNP 62820 62820 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40916 SAMTools SNP 64511 64511 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold40916 SAMTools SNP 64664 64664 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold40916 SAMTools SNP 64745 64745 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40916 SAMTools SNP 65577 65577 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40916 SAMTools SNP 65843 65843 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.27%2C5.9e-09%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold40916 SAMTools SNP 67167 67167 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold40916 SAMTools SNP 67179 67179 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold40916 SAMTools SNP 67755 67755 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C189:99 scaffold40916 SAMTools SNP 68954 68954 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold40916 SAMTools SNP 69009 69009 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40916 SAMTools SNP 69276 69276 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold40916 SAMTools SNP 70117 70117 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold40916 SAMTools SNP 70149 70149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40916 SAMTools SNP 70819 70819 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold40916 SAMTools SNP 71566 71566 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C5.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold40916 SAMTools SNP 71971 71971 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40916 SAMTools SNP 72141 72141 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40916 SAMTools SNP 73740 73740 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40916 SAMTools SNP 73975 73975 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.49%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold40916 SAMTools SNP 74611 74611 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.00078%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold40916 SAMTools SNP 75128 75128 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40916 SAMTools SNP 76226 76226 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C45%2C0:87 scaffold40916 SAMTools SNP 76269 76269 54.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold40916 SAMTools SNP 76449 76449 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.00033%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold40916 SAMTools SNP 76456 76456 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.18%2C0.45%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold40916 SAMTools SNP 76684 76684 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold40916 SAMTools SNP 77202 77202 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40916 SAMTools SNP 77721 77721 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40916 SAMTools SNP 77757 77757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold40916 SAMTools SNP 77785 77785 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold40916 SAMTools SNP 78068 78068 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C44%2C1%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold40916 SAMTools SNP 78113 78113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold40916 SAMTools SNP 78834 78834 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40916 SAMTools SNP 79227 79227 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold40916 SAMTools SNP 79251 79251 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold40916 SAMTools SNP 79280 79280 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40916 SAMTools SNP 80905 80905 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.52%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40916 SAMTools SNP 80949 80949 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 82017 82017 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 82104 82104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 82435 82435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C43%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold40916 SAMTools SNP 82939 82939 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C32%2C16%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.18%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 83540 83540 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C33%2C18%2C13%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.38%2C1.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold40916 SAMTools SNP 84285 84285 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 84837 84837 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D25%2C16%2C4%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.28%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold40916 SAMTools SNP 85938 85938 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold40916 SAMTools SNP 86819 86819 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40916 SAMTools SNP 88784 88784 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40916 SAMTools SNP 88808 88808 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40916 SAMTools SNP 89144 89144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold40916 SAMTools SNP 90096 90096 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold40916 SAMTools SNP 91431 91431 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.38%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold40916 SAMTools SNP 91461 91461 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.37%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C245:99 scaffold40916 SAMTools SNP 91482 91482 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C12%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold40916 SAMTools SNP 91739 91739 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00085%2C0.078%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold40916 SAMTools SNP 91774 91774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C22%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold40916 SAMTools SNP 91933 91933 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.013%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold40916 SAMTools SNP 91951 91951 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40916 SAMTools SNP 91957 91957 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40916 SAMTools SNP 94778 94778 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold40916 SAMTools SNP 95436 95436 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C12%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1.9e-05%2C7.7e-11%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40916 SAMTools SNP 96061 96061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40916 SAMTools SNP 96063 96063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold40916 SAMTools SNP 96163 96163 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C30%2C0:57 scaffold40916 SAMTools SNP 96205 96205 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C45%2C0:87 scaffold40916 SAMTools SNP 99013 99013 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold40928 SAMTools SNP 768 768 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40928 SAMTools SNP 11486 11486 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold40928 SAMTools SNP 17955 17955 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold40928 SAMTools SNP 54180 54180 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold40928 SAMTools SNP 67498 67498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40938 SAMTools SNP 14584 14584 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40938 SAMTools SNP 14586 14586 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40938 SAMTools SNP 14674 14674 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40938 SAMTools SNP 37623 37623 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold40938 SAMTools SNP 38201 38201 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold40938 SAMTools SNP 61183 61183 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.13%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C152:99 scaffold40938 SAMTools SNP 63174 63174 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold40938 SAMTools SNP 64521 64521 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40938 SAMTools SNP 67167 67167 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold40938 SAMTools SNP 67428 67428 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold40938 SAMTools SNP 77204 77204 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold40938 SAMTools SNP 78978 78978 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C2%3BMQ%3D39%3BFQ%3D139%3BPV4%3D0.66%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C244:99 scaffold40938 SAMTools SNP 79032 79032 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C8%2C3%3BMQ%3D26%3BFQ%3D11.3%3BPV4%3D0.16%2C0.17%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C235:40 scaffold40938 SAMTools SNP 83770 83770 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold40938 SAMTools SNP 83897 83897 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40938 SAMTools SNP 86316 86316 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C216:99 scaffold40938 SAMTools SNP 87890 87890 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40938 SAMTools SNP 87972 87972 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C214:99 scaffold40938 SAMTools SNP 91701 91701 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0024%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40938 SAMTools SNP 91702 91702 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold40938 SAMTools SNP 91708 91708 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40938 SAMTools SNP 92954 92954 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold40938 SAMTools SNP 94922 94922 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D31.8%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C71:62 scaffold40938 SAMTools SNP 95172 95172 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold40938 SAMTools SNP 95239 95239 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40938 SAMTools SNP 96697 96697 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.19%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold40938 SAMTools SNP 97269 97269 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40938 SAMTools SNP 97328 97328 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold40938 SAMTools SNP 97610 97610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold40938 SAMTools SNP 99754 99754 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.34%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold40938 SAMTools SNP 102898 102898 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C158:96 scaffold40938 SAMTools SNP 102910 102910 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40948 SAMTools SNP 1303 1303 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40948 SAMTools SNP 1379 1379 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40948 SAMTools SNP 4070 4070 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C117%2C0:99 scaffold40948 SAMTools SNP 5120 5120 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C0%2C71%3BMQ%3D50%3BFQ%3D162%3BPV4%3D6.9e-14%2C2.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold40948 SAMTools SNP 13551 13551 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold40948 SAMTools SNP 14990 14990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C19%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold40948 SAMTools SNP 15099 15099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40948 SAMTools SNP 20952 20952 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40948 SAMTools SNP 22238 22238 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C11%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C0.18%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40948 SAMTools SNP 23175 23175 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40948 SAMTools SNP 23194 23194 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40948 SAMTools SNP 23805 23805 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold40948 SAMTools SNP 23844 23844 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C246:99 scaffold40948 SAMTools SNP 23895 23895 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold40948 SAMTools SNP 24633 24633 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C172:99 scaffold40948 SAMTools SNP 24717 24717 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C45%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.3%2C0.0016%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold40948 SAMTools SNP 25127 25127 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C9%2C34%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.33%2C4.1e-05%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold40948 SAMTools SNP 26005 26005 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C33%2C0:63 scaffold40948 SAMTools SNP 26658 26658 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C180:75 scaffold40948 SAMTools SNP 26811 26811 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.076%2C1e-12%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C129:62 scaffold40948 SAMTools SNP 27555 27555 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.046%2C5.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold40948 SAMTools SNP 27758 27758 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold40948 SAMTools SNP 27774 27774 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40948 SAMTools SNP 28199 28199 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold40948 SAMTools SNP 28214 28214 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40948 SAMTools SNP 28286 28286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold40948 SAMTools SNP 28331 28331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C3%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold40948 SAMTools SNP 28627 28627 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C87%2C0:99 scaffold40948 SAMTools SNP 29819 29819 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C69%2C0:99 scaffold40948 SAMTools SNP 29905 29905 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C36%2C0:69 scaffold40948 SAMTools SNP 30011 30011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold40948 SAMTools SNP 30791 30791 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C7%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00022%2C0.072%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold40948 SAMTools SNP 31635 31635 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40948 SAMTools SNP 31653 31653 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40948 SAMTools SNP 31655 31655 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40948 SAMTools SNP 31698 31698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold40948 SAMTools SNP 31982 31982 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.15%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C223:52 scaffold40948 SAMTools SNP 31987 31987 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.064%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold40948 SAMTools SNP 33418 33418 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C103:33 scaffold40948 SAMTools SNP 38943 38943 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40948 SAMTools SNP 39619 39619 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold40948 SAMTools SNP 40271 40271 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40948 SAMTools SNP 40797 40797 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0015%2C6.9e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold40948 SAMTools SNP 50609 50609 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold40948 SAMTools SNP 50708 50708 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40948 SAMTools SNP 50717 50717 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold40948 SAMTools SNP 51413 51413 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C10%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.27%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold40948 SAMTools SNP 51656 51656 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40948 SAMTools SNP 70274 70274 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold40948 SAMTools SNP 70588 70588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C19%2C73%3BMQ%3D50%3BFQ%3D-215%3BPV4%3D0.048%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C188%2C0:99 scaffold40948 SAMTools SNP 71079 71079 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40948 SAMTools SNP 71127 71127 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold40948 SAMTools SNP 78419 78419 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C72%2C4%2C58%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.39%2C3.4e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold40948 SAMTools SNP 78938 78938 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C12%2C25%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.11%2C2.9e-45%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold40948 SAMTools SNP 79226 79226 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C30%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.028%2C5.8e-22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold40948 SAMTools SNP 81588 81588 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D7.4e-07%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C208:71 scaffold40948 SAMTools SNP 81868 81868 28.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold40950 SAMTools SNP 2432 2432 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40950 SAMTools SNP 2940 2940 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold40950 SAMTools SNP 35163 35163 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C60%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C202%2C0:99 scaffold40950 SAMTools SNP 44454 44454 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C17:20 scaffold40950 SAMTools SNP 45036 45036 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40950 SAMTools SNP 45080 45080 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40950 SAMTools SNP 45492 45492 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C159:76 scaffold40950 SAMTools SNP 45561 45561 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold40950 SAMTools SNP 45563 45563 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold40950 SAMTools SNP 45567 45567 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold40950 SAMTools SNP 45569 45569 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40950 SAMTools SNP 45934 45934 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40950 SAMTools SNP 46825 46825 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40950 SAMTools SNP 47269 47269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 47348 47348 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40950 SAMTools SNP 49761 49761 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold40950 SAMTools SNP 49792 49792 58.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold40950 SAMTools SNP 50386 50386 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold40950 SAMTools SNP 51646 51646 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40950 SAMTools SNP 53543 53543 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C59%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold40950 SAMTools SNP 53555 53555 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold40950 SAMTools SNP 53621 53621 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.16%2C4.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C238:99 scaffold40950 SAMTools SNP 54078 54078 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold40950 SAMTools SNP 54101 54101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40950 SAMTools SNP 54599 54599 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold40950 SAMTools SNP 54647 54647 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40950 SAMTools SNP 55458 55458 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold40950 SAMTools SNP 55832 55832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C6.5e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40950 SAMTools SNP 55942 55942 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 55943 55943 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 56326 56326 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.44%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold40950 SAMTools SNP 56770 56770 84.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold40950 SAMTools SNP 58533 58533 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 59386 59386 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 59872 59872 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40950 SAMTools SNP 59908 59908 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold40950 SAMTools SNP 60508 60508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40950 SAMTools SNP 61994 61994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40950 SAMTools SNP 62024 62024 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold40950 SAMTools SNP 62146 62146 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40950 SAMTools SNP 62160 62160 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40950 SAMTools SNP 62162 62162 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.26%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold40950 SAMTools SNP 62680 62680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold40950 SAMTools SNP 82534 82534 47.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold40950 SAMTools SNP 84410 84410 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40950 SAMTools SNP 98422 98422 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40950 SAMTools SNP 99426 99426 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40950 SAMTools SNP 102980 102980 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40950 SAMTools SNP 103222 103222 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40950 SAMTools SNP 103266 103266 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40950 SAMTools SNP 103291 103291 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40950 SAMTools SNP 103472 103472 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold40950 SAMTools SNP 103509 103509 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold40950 SAMTools SNP 103885 103885 29.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold40952 SAMTools SNP 33116 33116 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 33135 33135 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 33187 33187 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40952 SAMTools SNP 33219 33219 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40952 SAMTools SNP 41201 41201 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 41342 41342 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40952 SAMTools SNP 43682 43682 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40952 SAMTools SNP 43736 43736 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40952 SAMTools SNP 49962 49962 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 50855 50855 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40952 SAMTools SNP 55423 55423 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold40952 SAMTools SNP 56218 56218 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0153%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40952 SAMTools SNP 56426 56426 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold40952 SAMTools SNP 56442 56442 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 56552 56552 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 56697 56697 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40952 SAMTools SNP 56960 56960 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold40952 SAMTools SNP 57336 57336 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 57337 57337 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40952 SAMTools SNP 58094 58094 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold40952 SAMTools SNP 58104 58104 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold40952 SAMTools SNP 58186 58186 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C127:64 scaffold40952 SAMTools SNP 58439 58439 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40960 SAMTools SNP 313 313 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 378 378 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 453 453 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 5646 5646 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 5848 5848 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 6074 6074 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40960 SAMTools SNP 6145 6145 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40960 SAMTools SNP 6365 6365 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.46%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C200:36 scaffold40960 SAMTools SNP 8906 8906 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold40960 SAMTools SNP 8959 8959 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold40960 SAMTools SNP 11814 11814 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 11844 11844 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold40960 SAMTools SNP 11856 11856 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 13920 13920 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C8%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0013%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold40960 SAMTools SNP 14510 14510 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 14599 14599 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold40960 SAMTools SNP 15353 15353 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C37%2C20%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 15942 15942 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C8%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 16302 16302 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C44%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 17167 17167 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 18949 18949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C15%2C45%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-09%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 18979 18979 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C295%2C43%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40960 SAMTools SNP 19213 19213 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold40960 SAMTools SNP 19281 19281 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C26%2C57%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.12%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 22934 22934 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C2.5e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C249:99 scaffold40960 SAMTools SNP 25578 25578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40960 SAMTools SNP 26341 26341 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40960 SAMTools SNP 26396 26396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C37%2C34%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 27612 27612 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C96%2C0:99 scaffold40960 SAMTools SNP 28015 28015 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.2e-08%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C176:84 scaffold40960 SAMTools SNP 28207 28207 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C30%2C0:57 scaffold40960 SAMTools SNP 28244 28244 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C1%2C15%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C1.2e-44%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold40960 SAMTools SNP 28330 28330 72.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold40960 SAMTools SNP 29247 29247 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold40960 SAMTools SNP 29282 29282 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40960 SAMTools SNP 32640 32640 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C11%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0024%2C4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold40960 SAMTools SNP 33256 33256 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C114%2C0:99 scaffold40960 SAMTools SNP 33335 33335 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold40960 SAMTools SNP 34739 34739 20.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold40960 SAMTools SNP 37173 37173 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40960 SAMTools SNP 37231 37231 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold40960 SAMTools SNP 41691 41691 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.099%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C193:39 scaffold40960 SAMTools SNP 41692 41692 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.02%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C142:84 scaffold40960 SAMTools SNP 41973 41973 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C14%3BMQ%3D48%3BFQ%3D119%3BPV4%3D5.1e-07%2C6.3e-11%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold40960 SAMTools SNP 42381 42381 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C22%2C42%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D3e-05%2C1%2C1%2C5.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold40960 SAMTools SNP 42397 42397 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D311%2C24%2C223%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-06%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 42404 42404 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D557%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D310%2C24%2C223%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D4.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold40960 SAMTools SNP 42909 42909 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 43270 43270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 44324 44324 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C53%2C25%3BMQ%3D50%3BFQ%3D-215%3BPV4%3D1%2C0.26%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C188%2C0:99 scaffold40960 SAMTools SNP 44344 44344 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C42%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.12%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 45751 45751 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C41%2C27%2C30%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.86%2C7.4e-09%2C0.21%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 45829 45829 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C55%2C54%2C52%3BMQ%3D49%3BFQ%3D203%3BPV4%3D0.33%2C1e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold40960 SAMTools SNP 46068 46068 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C42%2C33%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 46537 46537 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 46549 46549 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C2%2C36%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 46951 46951 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C40%2C61%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.18%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 47307 47307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40960 SAMTools SNP 48320 48320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C27%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C6.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 48535 48535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold40960 SAMTools SNP 48616 48616 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C49%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C223%2C0:99 scaffold40960 SAMTools SNP 48626 48626 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C40%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold40960 SAMTools SNP 48797 48797 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C57%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C178%2C0:99 scaffold40960 SAMTools SNP 49368 49368 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40960 SAMTools SNP 49670 49670 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C17%2C60%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D9.1e-05%2C1.8e-43%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold40960 SAMTools SNP 50224 50224 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C77%2C14%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 50549 50549 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C44%2C24%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D5.3e-07%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold40960 SAMTools SNP 50556 50556 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C45%2C39%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1.7e-10%2C4.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold40960 SAMTools SNP 50670 50670 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C24%2C10%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold40960 SAMTools SNP 50877 50877 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C59%2C20%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 51172 51172 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold40960 SAMTools SNP 51577 51577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C93%2C49%2C256%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-07%2C4.1e-193%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 51982 51982 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C172:62 scaffold40960 SAMTools SNP 52180 52180 22.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C24%2C0:41 scaffold40960 SAMTools SNP 53743 53743 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40960 SAMTools SNP 54340 54340 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.28%2C0.0069%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold40960 SAMTools SNP 54346 54346 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold40960 SAMTools SNP 55709 55709 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C11%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C5.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold40960 SAMTools SNP 59163 59163 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.021%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C198:99 scaffold40960 SAMTools SNP 59226 59226 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C38:41 scaffold40960 SAMTools SNP 59232 59232 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold40960 SAMTools SNP 59672 59672 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C235:99 scaffold40960 SAMTools SNP 60469 60469 124 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C98%2C248%2C0%2C239:69 scaffold40960 SAMTools SNP 60514 60514 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.2%2C0.078%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold40960 SAMTools SNP 61052 61052 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.038%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold40960 SAMTools SNP 61069 61069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40960 SAMTools SNP 61398 61398 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40960 SAMTools SNP 62851 62851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 64728 64728 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 64767 64767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 66591 66591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 67063 67063 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold40960 SAMTools SNP 67077 67077 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40960 SAMTools SNP 67507 67507 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.48%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C245:99 scaffold40960 SAMTools SNP 67519 67519 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.38%2C2.1e-05%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold40960 SAMTools SNP 67573 67573 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C42%2C0:81 scaffold40960 SAMTools SNP 67624 67624 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C27%2C0:51 scaffold40960 SAMTools SNP 67636 67636 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.033%2C0.41%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold40960 SAMTools SNP 68895 68895 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold40960 SAMTools SNP 68925 68925 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold40960 SAMTools SNP 69545 69545 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 69937 69937 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 69976 69976 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold40960 SAMTools SNP 70006 70006 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.4%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C174:99 scaffold40960 SAMTools SNP 70490 70490 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold40960 SAMTools SNP 70682 70682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40960 SAMTools SNP 70772 70772 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40960 SAMTools SNP 71212 71212 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 71287 71287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C16%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold40960 SAMTools SNP 71783 71783 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C247:99 scaffold40960 SAMTools SNP 71804 71804 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C240:99 scaffold40960 SAMTools SNP 71834 71834 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C209:99 scaffold40960 SAMTools SNP 72331 72331 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold40960 SAMTools SNP 72436 72436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40960 SAMTools SNP 72748 72748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold40960 SAMTools SNP 73174 73174 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold40960 SAMTools SNP 74021 74021 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40960 SAMTools SNP 74113 74113 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold40960 SAMTools SNP 74345 74345 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C126%2C0:99 scaffold40960 SAMTools SNP 75094 75094 36.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold40960 SAMTools SNP 76701 76701 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold40960 SAMTools SNP 77789 77789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C3%2C11%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.081%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold40960 SAMTools SNP 78314 78314 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0026%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold40960 SAMTools SNP 79240 79240 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold40960 SAMTools SNP 79471 79471 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.29%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold40960 SAMTools SNP 79998 79998 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold40960 SAMTools SNP 82622 82622 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold40960 SAMTools SNP 82714 82714 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold40960 SAMTools SNP 83409 83409 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold40960 SAMTools SNP 84104 84104 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 84294 84294 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold40960 SAMTools SNP 84646 84646 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40960 SAMTools SNP 84650 84650 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold40960 SAMTools SNP 85113 85113 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40960 SAMTools SNP 91078 91078 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.0038%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold40960 SAMTools SNP 91831 91831 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.74%2C5.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold40960 SAMTools SNP 91891 91891 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C12%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.029%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold40960 SAMTools SNP 92060 92060 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C1%2C13%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold40960 SAMTools SNP 92109 92109 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold40960 SAMTools SNP 92130 92130 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.53%2C0.052%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold40960 SAMTools SNP 92133 92133 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.032%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold40960 SAMTools SNP 92157 92157 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C246:41 scaffold40960 SAMTools SNP 93711 93711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold40960 SAMTools SNP 93887 93887 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold40960 SAMTools SNP 95139 95139 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold40960 SAMTools SNP 95172 95172 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C227:99 scaffold40960 SAMTools SNP 95214 95214 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold40960 SAMTools SNP 96924 96924 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold40960 SAMTools SNP 96951 96951 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold40974 SAMTools SNP 35525 35525 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40974 SAMTools SNP 35532 35532 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40974 SAMTools SNP 35961 35961 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold40974 SAMTools SNP 38243 38243 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold40980 SAMTools SNP 150 150 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold40980 SAMTools SNP 631 631 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40980 SAMTools SNP 2002 2002 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold40980 SAMTools SNP 3945 3945 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40980 SAMTools SNP 7975 7975 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold40980 SAMTools SNP 8672 8672 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold40980 SAMTools SNP 8706 8706 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C18%2C0:33 scaffold40980 SAMTools SNP 8746 8746 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold40980 SAMTools SNP 8773 8773 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold40980 SAMTools SNP 9230 9230 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C8.5e-17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold40980 SAMTools SNP 9285 9285 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold40980 SAMTools SNP 9335 9335 212 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold40980 SAMTools SNP 9631 9631 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold40980 SAMTools SNP 9633 9633 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold40980 SAMTools SNP 9724 9724 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold40980 SAMTools SNP 19519 19519 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold40980 SAMTools SNP 19892 19892 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold40980 SAMTools SNP 20295 20295 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold40980 SAMTools SNP 21160 21160 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40980 SAMTools SNP 21189 21189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold40980 SAMTools SNP 21223 21223 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold40980 SAMTools SNP 22234 22234 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold40980 SAMTools SNP 22265 22265 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold40980 SAMTools SNP 22276 22276 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold40980 SAMTools SNP 22288 22288 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C186:99 scaffold40980 SAMTools SNP 23446 23446 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40980 SAMTools SNP 23504 23504 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40980 SAMTools SNP 29343 29343 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold40980 SAMTools SNP 29385 29385 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C48%2C0:93 scaffold40980 SAMTools SNP 29469 29469 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.4%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C91:94 scaffold40980 SAMTools SNP 30220 30220 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40980 SAMTools SNP 30711 30711 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold40980 SAMTools SNP 32056 32056 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold40980 SAMTools SNP 50536 50536 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold40980 SAMTools SNP 51699 51699 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40980 SAMTools SNP 51718 51718 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40980 SAMTools SNP 51984 51984 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold40980 SAMTools SNP 52872 52872 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40.9%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C86:71 scaffold40980 SAMTools SNP 54441 54441 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.65%2C9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold40980 SAMTools SNP 54474 54474 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold40980 SAMTools SNP 54531 54531 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold40980 SAMTools SNP 55280 55280 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold40980 SAMTools SNP 57236 57236 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold40980 SAMTools SNP 79205 79205 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40980 SAMTools SNP 81021 81021 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold40980 SAMTools SNP 81062 81062 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold40980 SAMTools SNP 81069 81069 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold40980 SAMTools SNP 94833 94833 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40982 SAMTools SNP 1014 1014 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40982 SAMTools SNP 1036 1036 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold40982 SAMTools SNP 1086 1086 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40982 SAMTools SNP 3704 3704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40982 SAMTools SNP 7165 7165 36.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold40982 SAMTools SNP 28474 28474 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold40982 SAMTools SNP 62179 62179 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C130:37 scaffold40982 SAMTools SNP 64828 64828 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold40982 SAMTools SNP 97240 97240 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D37%2C9%2C21%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.15%2C2.4e-35%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold40982 SAMTools SNP 97656 97656 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C35%2C24%2C27%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.37%2C3e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold40982 SAMTools SNP 98121 98121 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold40982 SAMTools SNP 98142 98142 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold40982 SAMTools SNP 100193 100193 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold40982 SAMTools SNP 100682 100682 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C13%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.32%2C6.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold40982 SAMTools SNP 100855 100855 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0071%2C2.1e-08%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold40988 SAMTools SNP 3138 3138 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C169%2C0:99 scaffold40988 SAMTools SNP 84814 84814 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold40988 SAMTools SNP 84834 84834 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold40994 SAMTools SNP 12368 12368 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40994 SAMTools SNP 12369 12369 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40994 SAMTools SNP 12492 12492 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40994 SAMTools SNP 12521 12521 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold40994 SAMTools SNP 44345 44345 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C27%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C37%2C0:42 scaffold40994 SAMTools SNP 50091 50091 19.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold410 SAMTools SNP 15937 15937 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold410 SAMTools SNP 16077 16077 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold410 SAMTools SNP 17973 17973 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.17%2C2.5e-10%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold410 SAMTools SNP 17988 17988 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.61%2C0.041%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold410 SAMTools SNP 18545 18545 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold410 SAMTools SNP 19208 19208 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C24%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.21%2C0.098%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold410 SAMTools SNP 19261 19261 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold410 SAMTools SNP 19277 19277 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.095%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C177:99 scaffold410 SAMTools SNP 19959 19959 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold410 SAMTools SNP 19974 19974 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 20756 20756 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D35%3BFQ%3D9.42%3BPV4%3D1%2C0.31%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold410 SAMTools SNP 20788 20788 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold410 SAMTools SNP 20813 20813 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 81362 81362 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold410 SAMTools SNP 107979 107979 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 138424 138424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D470%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C220%2C48%2C164%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 138521 138521 7.59 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C36%2C30%2C37%2C0%2C34:7 scaffold410 SAMTools SNP 145890 145890 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 146154 146154 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold410 SAMTools SNP 146177 146177 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold410 SAMTools SNP 154914 154914 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold410 SAMTools SNP 155314 155314 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold410 SAMTools SNP 155456 155456 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.23%2C0.00035%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C253:55 scaffold410 SAMTools SNP 156570 156570 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold410 SAMTools SNP 157964 157964 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C108%2C0:99 scaffold410 SAMTools SNP 158052 158052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 158079 158079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 158106 158106 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C58%2C2%2C26%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.5%2C2.3e-09%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold410 SAMTools SNP 158794 158794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 158854 158854 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C50%2C108%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 159944 159944 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 159971 159971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 160670 160670 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold410 SAMTools SNP 160718 160718 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C75%2C26%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 160803 160803 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 162203 162203 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C18%2C176%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-05%2C0.45%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 162230 162230 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C8%2C117%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.45%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 162707 162707 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C46%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 163097 163097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 163567 163567 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 163597 163597 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold410 SAMTools SNP 163661 163661 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C61%2C19%3BMQ%3D50%3BFQ%3D-221%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C194%2C0:99 scaffold410 SAMTools SNP 165007 165007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C224%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 165253 165253 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C66%2C6%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 165604 165604 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C74%2C65%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00044%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 165872 165872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C190%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 166303 166303 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C170%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 166539 166539 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C0%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 166648 166648 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold410 SAMTools SNP 166690 166690 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold410 SAMTools SNP 166905 166905 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold410 SAMTools SNP 166920 166920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold410 SAMTools SNP 167504 167504 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold410 SAMTools SNP 167831 167831 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold410 SAMTools SNP 167886 167886 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold410 SAMTools SNP 168215 168215 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold410 SAMTools SNP 168227 168227 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold410 SAMTools SNP 168628 168628 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold410 SAMTools SNP 168670 168670 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold410 SAMTools SNP 170274 170274 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold410 SAMTools SNP 170277 170277 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold410 SAMTools SNP 181269 181269 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 181313 181313 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold410 SAMTools SNP 184750 184750 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold410 SAMTools SNP 184828 184828 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold410 SAMTools SNP 184843 184843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 185238 185238 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C128:99 scaffold410 SAMTools SNP 185250 185250 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold410 SAMTools SNP 185265 185265 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.28%2C0.00093%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold410 SAMTools SNP 186145 186145 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C70%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 186185 186185 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C37%2C13%2C14%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.35%2C6.1e-22%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold410 SAMTools SNP 187077 187077 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold410 SAMTools SNP 187086 187086 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold410 SAMTools SNP 187089 187089 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold410 SAMTools SNP 197286 197286 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold410 SAMTools SNP 197287 197287 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold410 SAMTools SNP 202332 202332 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold410 SAMTools SNP 202344 202344 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.2%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold410 SAMTools SNP 202379 202379 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold410 SAMTools SNP 202710 202710 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C236:97 scaffold410 SAMTools SNP 202725 202725 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold410 SAMTools SNP 203603 203603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C0.065%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 203687 203687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold410 SAMTools SNP 204751 204751 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.43%2C0.3%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold410 SAMTools SNP 204820 204820 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold410 SAMTools SNP 204842 204842 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold410 SAMTools SNP 205330 205330 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold410 SAMTools SNP 205363 205363 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C179:99 scaffold410 SAMTools SNP 205784 205784 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold410 SAMTools SNP 205789 205789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold410 SAMTools SNP 205792 205792 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 206069 206069 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C18%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold410 SAMTools SNP 206084 206084 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold410 SAMTools SNP 206189 206189 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.00029%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold410 SAMTools SNP 206225 206225 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C29:32 scaffold410 SAMTools SNP 206502 206502 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold410 SAMTools SNP 206957 206957 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 206984 206984 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 207077 207077 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 207089 207089 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.22%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold410 SAMTools SNP 207629 207629 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold410 SAMTools SNP 207692 207692 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.085%2C0.088%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold410 SAMTools SNP 209665 209665 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold410 SAMTools SNP 211837 211837 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold410 SAMTools SNP 213018 213018 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold410 SAMTools SNP 213054 213054 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold410 SAMTools SNP 213376 213376 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.53%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold410 SAMTools SNP 213444 213444 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.00095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 213465 213465 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold410 SAMTools SNP 218110 218110 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 218588 218588 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold410 SAMTools SNP 219906 219906 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.21%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold410 SAMTools SNP 220484 220484 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold410 SAMTools SNP 220499 220499 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.21%2C0.037%2C1%2C4.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C223:89 scaffold410 SAMTools SNP 220532 220532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold410 SAMTools SNP 220589 220589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold410 SAMTools SNP 222320 222320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C42%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 222606 222606 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C43%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold410 SAMTools SNP 222656 222656 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.2%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold410 SAMTools SNP 222665 222665 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.68%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold410 SAMTools SNP 222698 222698 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold410 SAMTools SNP 222710 222710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold410 SAMTools SNP 223217 223217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 223220 223220 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.13%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 223769 223769 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold410 SAMTools SNP 223778 223778 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.083%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 223787 223787 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 227291 227291 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C7.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C23:26 scaffold410 SAMTools SNP 230291 230291 15.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C18%2C0:28 scaffold410 SAMTools SNP 230312 230312 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C75%2C0:99 scaffold410 SAMTools SNP 230349 230349 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C239:85 scaffold410 SAMTools SNP 233210 233210 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C89%2C0%2C37%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.19%2C0.39%2C1%2C5.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold410 SAMTools SNP 233237 233237 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C95%2C0%2C48%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.031%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold410 SAMTools SNP 234109 234109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold410 SAMTools SNP 234112 234112 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold410 SAMTools SNP 234157 234157 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold410 SAMTools SNP 234160 234160 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold410 SAMTools SNP 234772 234772 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold410 SAMTools SNP 235605 235605 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold410 SAMTools SNP 235623 235623 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 239229 239229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 239280 239280 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C242:99 scaffold410 SAMTools SNP 239306 239306 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.36%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C248:99 scaffold410 SAMTools SNP 239726 239726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold410 SAMTools SNP 239789 239789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C15%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.41%2C0.38%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold410 SAMTools SNP 240065 240065 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold410 SAMTools SNP 240087 240087 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold410 SAMTools SNP 240104 240104 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 240116 240116 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold410 SAMTools SNP 240847 240847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold410 SAMTools SNP 241092 241092 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold410 SAMTools SNP 243855 243855 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C179%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 243987 243987 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 244546 244546 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold410 SAMTools SNP 244633 244633 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 244929 244929 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C20%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C0.49%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 244935 244935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C16%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold410 SAMTools SNP 246896 246896 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C38%2C5%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 247447 247447 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C1%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold410 SAMTools SNP 247591 247591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold410 SAMTools SNP 247603 247603 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold410 SAMTools SNP 247957 247957 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold410 SAMTools SNP 247984 247984 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.34%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold410 SAMTools SNP 248567 248567 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold410 SAMTools SNP 252207 252207 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 252260 252260 52.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold410 SAMTools SNP 252527 252527 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold410 SAMTools SNP 253327 253327 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C27%2C0:51 scaffold410 SAMTools SNP 255621 255621 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold410 SAMTools SNP 256584 256584 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold410 SAMTools SNP 259460 259460 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D161%2C323%2C40%2C70%3BMQ%3D40%3BFQ%3D6.2%3BPV4%3D0.58%2C1%2C0.42%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C150:31 scaffold410 SAMTools SNP 281597 281597 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.21%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold410 SAMTools SNP 281632 281632 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold410 SAMTools SNP 287267 287267 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C207:99 scaffold410 SAMTools SNP 288408 288408 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold410 SAMTools SNP 288445 288445 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold410 SAMTools SNP 288508 288508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold410 SAMTools SNP 288529 288529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold410 SAMTools SNP 289134 289134 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold410 SAMTools SNP 289286 289286 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold410 SAMTools SNP 289321 289321 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold410 SAMTools SNP 289910 289910 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C2%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold410 SAMTools SNP 289997 289997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C73%3BMQ%3D50%3BFQ%3D-200%3BPV4%3D1%2C0.27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C0:99 scaffold410 SAMTools SNP 290846 290846 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 295267 295267 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 295306 295306 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold410 SAMTools SNP 295312 295312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold410 SAMTools SNP 296200 296200 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C21%2C59%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.4e-18%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 296212 296212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C37%2C29%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.065%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 296689 296689 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C26%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 296712 296712 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C18%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 297539 297539 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C16%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold410 SAMTools SNP 307371 307371 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold410 SAMTools SNP 313316 313316 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold410 SAMTools SNP 313324 313324 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold410 SAMTools SNP 314764 314764 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold410 SAMTools SNP 315109 315109 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold410 SAMTools SNP 315512 315512 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 316007 316007 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold410 SAMTools SNP 316031 316031 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold410 SAMTools SNP 316083 316083 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold410 SAMTools SNP 318978 318978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold410 SAMTools SNP 319001 319001 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.18%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold410 SAMTools SNP 323240 323240 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C12%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.15%2C1%2C0.005%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 323303 323303 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C10%3BMQ%3D48%3BFQ%3D108%3BPV4%3D0.61%2C0.0017%2C0.046%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold410 SAMTools SNP 323306 323306 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D44%3BFQ%3D81%3BPV4%3D1%2C0.094%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C246:99 scaffold410 SAMTools SNP 326718 326718 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C12%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.13%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold410 SAMTools SNP 328096 328096 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold410 SAMTools SNP 328122 328122 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold410 SAMTools SNP 328141 328141 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold410 SAMTools SNP 328664 328664 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold410 SAMTools SNP 329479 329479 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 329520 329520 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold410 SAMTools SNP 329644 329644 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 329654 329654 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 332920 332920 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold410 SAMTools SNP 332934 332934 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C21%2C0:39 scaffold410 SAMTools SNP 333454 333454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold410 SAMTools SNP 333518 333518 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold410 SAMTools SNP 333761 333761 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0166%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C179:30 scaffold410 SAMTools SNP 336147 336147 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C36%2C0:69 scaffold410 SAMTools SNP 336501 336501 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C57%2C0:99 scaffold410 SAMTools SNP 336573 336573 51.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold410 SAMTools SNP 360496 360496 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C31%2C13%2C12%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C4.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold410 SAMTools SNP 360514 360514 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C4.5e-09%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 360568 360568 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C110%2C20%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 362319 362319 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C45%2C54%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0046%2C1.5e-07%2C0.0091%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 362942 362942 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold410 SAMTools SNP 363798 363798 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold410 SAMTools SNP 368809 368809 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C96%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 368854 368854 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C8%2C14%3BMQ%3D42%3BFQ%3D159%3BPV4%3D0.22%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C251:99 scaffold410 SAMTools SNP 369212 369212 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C8%3BMQ%3D8%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C123%2C0:63 scaffold410 SAMTools SNP 373034 373034 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C47%2C1%2C16%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C1e-07%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold410 SAMTools SNP 376441 376441 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold410 SAMTools SNP 376478 376478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold410 SAMTools SNP 382225 382225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C21%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 382760 382760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 382783 382783 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C13%2C77%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 383035 383035 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D316%2C28%2C131%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 384104 384104 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C28%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold410 SAMTools SNP 384425 384425 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C29%2C5%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.22%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold410 SAMTools SNP 384743 384743 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 384779 384779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 384839 384839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C54%2C74%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 391462 391462 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold410 SAMTools SNP 391469 391469 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 393496 393496 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold410 SAMTools SNP 397233 397233 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold410 SAMTools SNP 397919 397919 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.35%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold410 SAMTools SNP 398732 398732 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold410 SAMTools SNP 399685 399685 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.17%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C233:34 scaffold410 SAMTools SNP 399955 399955 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold410 SAMTools SNP 400191 400191 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold410 SAMTools SNP 400528 400528 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.2%2C0.099%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold410 SAMTools SNP 401086 401086 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.066%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 401266 401266 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold410 SAMTools SNP 403844 403844 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold410 SAMTools SNP 404089 404089 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C178:99 scaffold410 SAMTools SNP 404161 404161 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.52%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C182:99 scaffold410 SAMTools SNP 406087 406087 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.2%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold410 SAMTools SNP 406366 406366 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold410 SAMTools SNP 406465 406465 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C111%2C0:99 scaffold410 SAMTools SNP 406661 406661 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold410 SAMTools SNP 407171 407171 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold410 SAMTools SNP 407395 407395 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 407417 407417 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold410 SAMTools SNP 408052 408052 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 410560 410560 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 412499 412499 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C15%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.028%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C153:61 scaffold410 SAMTools SNP 412686 412686 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 413491 413491 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.66%2C1.3e-20%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold410 SAMTools SNP 413538 413538 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.11%2C1.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold410 SAMTools SNP 413741 413741 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 413912 413912 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold410 SAMTools SNP 413932 413932 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold410 SAMTools SNP 414516 414516 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold410 SAMTools SNP 414668 414668 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold410 SAMTools SNP 414683 414683 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold410 SAMTools SNP 415894 415894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.098%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 415948 415948 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold410 SAMTools SNP 415966 415966 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C9%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.096%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C229:99 scaffold410 SAMTools SNP 416166 416166 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold410 SAMTools SNP 416174 416174 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 416599 416599 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold410 SAMTools SNP 416604 416604 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold410 SAMTools SNP 416832 416832 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold410 SAMTools SNP 416847 416847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold410 SAMTools SNP 417400 417400 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold410 SAMTools SNP 417467 417467 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold410 SAMTools SNP 417681 417681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 417761 417761 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 417773 417773 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold410 SAMTools SNP 419115 419115 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold410 SAMTools SNP 419202 419202 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.099%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold410 SAMTools SNP 420756 420756 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold410 SAMTools SNP 421904 421904 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold410 SAMTools SNP 421906 421906 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold410 SAMTools SNP 425001 425001 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.2%2C3.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold410 SAMTools SNP 425560 425560 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C96%2C0:99 scaffold410 SAMTools SNP 448399 448399 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold410 SAMTools SNP 459172 459172 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 463565 463565 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold410 SAMTools SNP 474178 474178 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 474196 474196 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 535503 535503 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold410 SAMTools SNP 535594 535594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C9%2C17%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.077%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold410 SAMTools SNP 535789 535789 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold410 SAMTools SNP 535794 535794 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold410 SAMTools SNP 536414 536414 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 541911 541911 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 541941 541941 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold410 SAMTools SNP 544215 544215 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.26%2C7.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold410 SAMTools SNP 544254 544254 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C20%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0038%2C1%2C1%2C7.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold410 SAMTools SNP 544780 544780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C13%2C34%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 544792 544792 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C19%2C20%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 546575 546575 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold410 SAMTools SNP 548361 548361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold410 SAMTools SNP 548641 548641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold410 SAMTools SNP 549427 549427 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold410 SAMTools SNP 551640 551640 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold410 SAMTools SNP 551670 551670 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold410 SAMTools SNP 551991 551991 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 551997 551997 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 552014 552014 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold410 SAMTools SNP 552563 552563 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold410 SAMTools SNP 552753 552753 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.25%2C2.4e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold410 SAMTools SNP 553592 553592 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C24%3BMQ%3D50%3BFQ%3D175%3BPV4%3D4.8e-05%2C0.0027%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold410 SAMTools SNP 554011 554011 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C59%2C2%2C12%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold410 SAMTools SNP 554023 554023 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C60%2C1%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold410 SAMTools SNP 554029 554029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C5%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-11%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold410 SAMTools SNP 556852 556852 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C33%2C0:63 scaffold410 SAMTools SNP 556927 556927 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C13%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1e-05%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold410 SAMTools SNP 556933 556933 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0036%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C245:99 scaffold410 SAMTools SNP 557748 557748 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold410 SAMTools SNP 594090 594090 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 594095 594095 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 594583 594583 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 594631 594631 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold410 SAMTools SNP 595001 595001 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold410 SAMTools SNP 595110 595110 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold410 SAMTools SNP 598237 598237 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold410 SAMTools SNP 598264 598264 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold410 SAMTools SNP 599469 599469 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold410 SAMTools SNP 599677 599677 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.045%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C233:34 scaffold410 SAMTools SNP 603747 603747 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 605082 605082 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold410 SAMTools SNP 605604 605604 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold410 SAMTools SNP 635459 635459 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold410 SAMTools SNP 636747 636747 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 636761 636761 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold410 SAMTools SNP 637521 637521 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold410 SAMTools SNP 638265 638265 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold410 SAMTools SNP 638334 638334 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41008 SAMTools SNP 14874 14874 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41008 SAMTools SNP 50377 50377 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C184:46 scaffold41008 SAMTools SNP 50535 50535 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold41008 SAMTools SNP 67609 67609 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41014 SAMTools SNP 2165 2165 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41014 SAMTools SNP 69254 69254 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41014 SAMTools SNP 77444 77444 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41014 SAMTools SNP 77494 77494 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41014 SAMTools SNP 77680 77680 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41014 SAMTools SNP 77718 77718 19.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold41022 SAMTools SNP 1658 1658 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 24456 24456 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold41022 SAMTools SNP 24510 24510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41022 SAMTools SNP 25312 25312 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41022 SAMTools SNP 25330 25330 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41022 SAMTools SNP 29614 29614 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41022 SAMTools SNP 29641 29641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41022 SAMTools SNP 29680 29680 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41022 SAMTools SNP 29692 29692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41022 SAMTools SNP 31820 31820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41022 SAMTools SNP 31826 31826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41022 SAMTools SNP 31892 31892 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41022 SAMTools SNP 33248 33248 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.31%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41022 SAMTools SNP 33281 33281 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.013%2C1.7e-11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C194:99 scaffold41022 SAMTools SNP 33305 33305 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C1.1e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold41022 SAMTools SNP 33338 33338 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 33361 33361 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41022 SAMTools SNP 36344 36344 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41022 SAMTools SNP 36362 36362 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold41022 SAMTools SNP 36831 36831 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41022 SAMTools SNP 36834 36834 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41022 SAMTools SNP 36873 36873 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41022 SAMTools SNP 37156 37156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41022 SAMTools SNP 37171 37171 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C149:99 scaffold41022 SAMTools SNP 37618 37618 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold41022 SAMTools SNP 37627 37627 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold41022 SAMTools SNP 37771 37771 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C47%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41022 SAMTools SNP 38591 38591 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41022 SAMTools SNP 39169 39169 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 39187 39187 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 39226 39226 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 39241 39241 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41022 SAMTools SNP 39807 39807 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.48%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold41022 SAMTools SNP 41706 41706 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C8:11 scaffold41022 SAMTools SNP 42224 42224 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D8.58%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C35:38 scaffold41022 SAMTools SNP 104629 104629 27.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold41034 SAMTools SNP 1341 1341 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 1410 1410 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 38421 38421 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41034 SAMTools SNP 39204 39204 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41034 SAMTools SNP 39234 39234 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41034 SAMTools SNP 39248 39248 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold41034 SAMTools SNP 50159 50159 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41034 SAMTools SNP 62223 62223 12.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold41034 SAMTools SNP 62845 62845 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41034 SAMTools SNP 65957 65957 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C227:62 scaffold41034 SAMTools SNP 67016 67016 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C26%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold41034 SAMTools SNP 67160 67160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 67870 67870 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41034 SAMTools SNP 68199 68199 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41034 SAMTools SNP 68660 68660 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.63%2C0.057%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold41034 SAMTools SNP 68766 68766 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold41034 SAMTools SNP 68801 68801 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41034 SAMTools SNP 69049 69049 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.029%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold41034 SAMTools SNP 69544 69544 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 69572 69572 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41034 SAMTools SNP 69685 69685 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold41034 SAMTools SNP 69846 69846 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C240:99 scaffold41034 SAMTools SNP 69897 69897 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold41034 SAMTools SNP 70219 70219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41034 SAMTools SNP 70234 70234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41034 SAMTools SNP 70588 70588 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41034 SAMTools SNP 71289 71289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41034 SAMTools SNP 71323 71323 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41034 SAMTools SNP 71593 71593 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41034 SAMTools SNP 71626 71626 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 71722 71722 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold41034 SAMTools SNP 71746 71746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41034 SAMTools SNP 72790 72790 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D23.1%3BPV4%3D1%2C1.6e-08%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C57:53 scaffold41034 SAMTools SNP 73109 73109 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41034 SAMTools SNP 73261 73261 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41034 SAMTools SNP 73889 73889 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold41034 SAMTools SNP 73927 73927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00053%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 74189 74189 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 74207 74207 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41034 SAMTools SNP 74546 74546 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 74600 74600 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.037%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C247:99 scaffold41034 SAMTools SNP 74609 74609 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold41034 SAMTools SNP 74615 74615 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0037%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C166:62 scaffold41034 SAMTools SNP 74633 74633 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C5.4e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C157:97 scaffold41034 SAMTools SNP 74732 74732 3.02 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C30%2C27%2C30%2C0%2C27:4 scaffold41034 SAMTools SNP 75495 75495 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41034 SAMTools SNP 75546 75546 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold41034 SAMTools SNP 76356 76356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41034 SAMTools SNP 76402 76402 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41034 SAMTools SNP 76615 76615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41034 SAMTools SNP 76729 76729 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41034 SAMTools SNP 76738 76738 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41034 SAMTools SNP 77480 77480 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 77498 77498 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C1%2C15%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C9.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold41034 SAMTools SNP 77765 77765 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold41034 SAMTools SNP 78052 78052 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41034 SAMTools SNP 78061 78061 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C27%2C0:51 scaffold41034 SAMTools SNP 78441 78441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C32%2C20%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.048%2C1%2C0.085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 78546 78546 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C27%2C0:51 scaffold41034 SAMTools SNP 78945 78945 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D28%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C66%2C0:99 scaffold41034 SAMTools SNP 78971 78971 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C5%3BMQ%3D35%3BFQ%3D39%3BPV4%3D0.55%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C152:69 scaffold41034 SAMTools SNP 80825 80825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D35%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41034 SAMTools SNP 80927 80927 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C2%2C3%3BMQ%3D48%3BFQ%3D104%3BPV4%3D0.17%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold41034 SAMTools SNP 81367 81367 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.00071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold41034 SAMTools SNP 82086 82086 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41034 SAMTools SNP 82269 82269 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0123%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D38%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C242:28 scaffold41034 SAMTools SNP 82746 82746 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.13%2C1.3e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41034 SAMTools SNP 82884 82884 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.36%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold41034 SAMTools SNP 82893 82893 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold41034 SAMTools SNP 83280 83280 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41034 SAMTools SNP 83382 83382 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C57%2C2%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.0093%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41034 SAMTools SNP 83574 83574 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41034 SAMTools SNP 83718 83718 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C13%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D2.7e-06%2C9.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold41034 SAMTools SNP 83979 83979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41034 SAMTools SNP 84021 84021 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C33%2C0:63 scaffold41034 SAMTools SNP 84341 84341 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41034 SAMTools SNP 84690 84690 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41034 SAMTools SNP 84837 84837 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C66:69 scaffold41034 SAMTools SNP 84840 84840 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41034 SAMTools SNP 84861 84861 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 85377 85377 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold41034 SAMTools SNP 85434 85434 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41034 SAMTools SNP 85500 85500 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.035%2C1%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold41034 SAMTools SNP 85515 85515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0009%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 85548 85548 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.13%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 85840 85840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41034 SAMTools SNP 86334 86334 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.12%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold41034 SAMTools SNP 86535 86535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41034 SAMTools SNP 86998 86998 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C178:99 scaffold41034 SAMTools SNP 87090 87090 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C9%2C0%3BMQ%3D49%3BFQ%3D116%3BPV4%3D0.0043%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold41034 SAMTools SNP 87353 87353 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41034 SAMTools SNP 87588 87588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41034 SAMTools SNP 87985 87985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 88129 88129 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 88460 88460 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 88493 88493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41034 SAMTools SNP 88589 88589 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41034 SAMTools SNP 88993 88993 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41034 SAMTools SNP 89083 89083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41034 SAMTools SNP 89128 89128 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41034 SAMTools SNP 89170 89170 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41034 SAMTools SNP 89488 89488 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C3%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1.5e-23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 89530 89530 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C33%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.39%2C2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41034 SAMTools SNP 89680 89680 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41034 SAMTools SNP 89683 89683 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 89887 89887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 90767 90767 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C20%2C23%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 90782 90782 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C20%2C90%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C5.9e-42%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 90869 90869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C99%2C4%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 90878 90878 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C99%2C4%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 91437 91437 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold41034 SAMTools SNP 92461 92461 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.13%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold41034 SAMTools SNP 92467 92467 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.26%2C0.073%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold41034 SAMTools SNP 92476 92476 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C0.37%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold41034 SAMTools SNP 92733 92733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41034 SAMTools SNP 92754 92754 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41034 SAMTools SNP 93261 93261 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold41034 SAMTools SNP 93477 93477 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41034 SAMTools SNP 93524 93524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41034 SAMTools SNP 93682 93682 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41034 SAMTools SNP 93805 93805 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41034 SAMTools SNP 93841 93841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41034 SAMTools SNP 94189 94189 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold41034 SAMTools SNP 94346 94346 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold41034 SAMTools SNP 94475 94475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C15%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold41034 SAMTools SNP 94693 94693 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 94988 94988 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C25%2C20%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 95027 95027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 95159 95159 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.006%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41034 SAMTools SNP 95183 95183 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.3%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41034 SAMTools SNP 95222 95222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.23%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 95800 95800 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C21%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold41034 SAMTools SNP 95948 95948 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C19%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.00035%2C0.021%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold41034 SAMTools SNP 96102 96102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41034 SAMTools SNP 96215 96215 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.16%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold41034 SAMTools SNP 96419 96419 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C44%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 96490 96490 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.17%2C0.0032%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41034 SAMTools SNP 96491 96491 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.31%2C0.005%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold41034 SAMTools SNP 96506 96506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C72%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold41034 SAMTools SNP 96536 96536 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C0%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 96818 96818 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41034 SAMTools SNP 96862 96862 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold41034 SAMTools SNP 96878 96878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41034 SAMTools SNP 97168 97168 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41034 SAMTools SNP 97309 97309 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.067%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold41034 SAMTools SNP 97545 97545 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41034 SAMTools SNP 97587 97587 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C215:99 scaffold41034 SAMTools SNP 97599 97599 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C240:99 scaffold41034 SAMTools SNP 97820 97820 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41034 SAMTools SNP 98252 98252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 98258 98258 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 98264 98264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 98285 98285 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.17%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41034 SAMTools SNP 98333 98333 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold41034 SAMTools SNP 98569 98569 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold41034 SAMTools SNP 98592 98592 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41034 SAMTools SNP 98670 98670 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41034 SAMTools SNP 98671 98671 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold41034 SAMTools SNP 98876 98876 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41034 SAMTools SNP 99011 99011 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C47%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-06%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 101052 101052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C45%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D2.6e-18%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold41034 SAMTools SNP 101060 101060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C38%2C0:73 scaffold41034 SAMTools SNP 101081 101081 30.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold41034 SAMTools SNP 101133 101133 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41034 SAMTools SNP 101476 101476 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C34%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0016%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold41034 SAMTools SNP 101563 101563 102 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C121%2C145%2C0%2C136:21 scaffold41034 SAMTools SNP 101584 101584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C52%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41034 SAMTools SNP 101941 101941 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41034 SAMTools SNP 101965 101965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C20%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 102287 102287 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.011%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold41034 SAMTools SNP 102308 102308 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 102721 102721 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41034 SAMTools SNP 102775 102775 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C34%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1.5e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold41034 SAMTools SNP 103404 103404 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.026%2C0.0015%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold41034 SAMTools SNP 103411 103411 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C3.9e-08%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold41034 SAMTools SNP 107076 107076 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold41054 SAMTools SNP 8744 8744 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold41054 SAMTools SNP 8785 8785 20.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41064 SAMTools SNP 2325 2325 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41064 SAMTools SNP 5759 5759 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.2%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold41064 SAMTools SNP 7465 7465 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold41064 SAMTools SNP 8567 8567 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.58%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold41064 SAMTools SNP 8590 8590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41064 SAMTools SNP 8633 8633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41064 SAMTools SNP 10285 10285 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41064 SAMTools SNP 12611 12611 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 12617 12617 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 12659 12659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 12665 12665 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 12671 12671 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41064 SAMTools SNP 12689 12689 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41064 SAMTools SNP 14473 14473 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41064 SAMTools SNP 15795 15795 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C251:99 scaffold41064 SAMTools SNP 16415 16415 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41064 SAMTools SNP 17459 17459 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41064 SAMTools SNP 21496 21496 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold41064 SAMTools SNP 21508 21508 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41064 SAMTools SNP 21877 21877 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41064 SAMTools SNP 25448 25448 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold41064 SAMTools SNP 25449 25449 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold41064 SAMTools SNP 25473 25473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41064 SAMTools SNP 25533 25533 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold41064 SAMTools SNP 25540 25540 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C7.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C96:58 scaffold41064 SAMTools SNP 25600 25600 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41064 SAMTools SNP 26264 26264 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41064 SAMTools SNP 26278 26278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41064 SAMTools SNP 27088 27088 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41064 SAMTools SNP 27353 27353 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold41064 SAMTools SNP 27818 27818 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41064 SAMTools SNP 27822 27822 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41064 SAMTools SNP 27834 27834 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold41064 SAMTools SNP 27865 27865 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold41064 SAMTools SNP 28038 28038 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41064 SAMTools SNP 28412 28412 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41064 SAMTools SNP 28469 28469 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41064 SAMTools SNP 29336 29336 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.062%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold41064 SAMTools SNP 29343 29343 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold41064 SAMTools SNP 29656 29656 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41064 SAMTools SNP 31295 31295 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 31337 31337 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41064 SAMTools SNP 32078 32078 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 32132 32132 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 36055 36055 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.43%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C193:99 scaffold41064 SAMTools SNP 36484 36484 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.041%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41064 SAMTools SNP 36523 36523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41064 SAMTools SNP 38267 38267 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold41064 SAMTools SNP 38621 38621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C39%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold41064 SAMTools SNP 39015 39015 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41064 SAMTools SNP 39668 39668 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C4%3BMQ%3D43%3BFQ%3D69%3BPV4%3D0.38%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold41064 SAMTools SNP 40399 40399 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold41064 SAMTools SNP 40400 40400 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C38:41 scaffold41064 SAMTools SNP 40564 40564 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41064 SAMTools SNP 40772 40772 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41064 SAMTools SNP 42295 42295 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41064 SAMTools SNP 43985 43985 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-86%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C59%2C0:99 scaffold41064 SAMTools SNP 44166 44166 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold41064 SAMTools SNP 44167 44167 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-9.51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C18:21 scaffold41064 SAMTools SNP 44795 44795 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold41064 SAMTools SNP 45083 45083 8.22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold41064 SAMTools SNP 45232 45232 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold41064 SAMTools SNP 47665 47665 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold41064 SAMTools SNP 48570 48570 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41064 SAMTools SNP 49671 49671 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C0%3BMQ%3D48%3BFQ%3D94%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C253:99 scaffold41064 SAMTools SNP 49721 49721 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C1%3BMQ%3D48%3BFQ%3D129%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C249:99 scaffold41064 SAMTools SNP 49756 49756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41064 SAMTools SNP 51980 51980 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold41064 SAMTools SNP 59913 59913 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 62371 62371 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C299%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41064 SAMTools SNP 62438 62438 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41064 SAMTools SNP 62442 62442 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold41064 SAMTools SNP 63060 63060 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C123%2C53%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41064 SAMTools SNP 63390 63390 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C38%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41064 SAMTools SNP 66266 66266 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C169%2C0:99 scaffold41064 SAMTools SNP 66407 66407 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C76%2C40%2C54%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.25%2C3.9e-118%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold41064 SAMTools SNP 66821 66821 42.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold41064 SAMTools SNP 66969 66969 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C5%2C15%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.75%2C2.4e-45%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41064 SAMTools SNP 67311 67311 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C0:57 scaffold41064 SAMTools SNP 67822 67822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold41064 SAMTools SNP 68070 68070 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C31%2C21%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.13%2C4.9e-64%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold41064 SAMTools SNP 68613 68613 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C78%2C0:99 scaffold41064 SAMTools SNP 70348 70348 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41064 SAMTools SNP 70366 70366 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41064 SAMTools SNP 71569 71569 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 71602 71602 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41064 SAMTools SNP 72787 72787 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 73625 73625 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41064 SAMTools SNP 74051 74051 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41064 SAMTools SNP 74065 74065 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41064 SAMTools SNP 74261 74261 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold41064 SAMTools SNP 74309 74309 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.019%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold41064 SAMTools SNP 74512 74512 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41064 SAMTools SNP 74519 74519 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41064 SAMTools SNP 74770 74770 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41064 SAMTools SNP 89460 89460 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41082 SAMTools SNP 28339 28339 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C54%2C18%3BMQ%3D46%3BFQ%3D74%3BPV4%3D0.0032%2C4.5e-46%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C242:99 scaffold41082 SAMTools SNP 28468 28468 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C0%3BMQ%3D41%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41082 SAMTools SNP 31289 31289 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41082 SAMTools SNP 36266 36266 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C179:31 scaffold41082 SAMTools SNP 36299 36299 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41082 SAMTools SNP 37095 37095 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41082 SAMTools SNP 37842 37842 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41082 SAMTools SNP 38931 38931 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41082 SAMTools SNP 39254 39254 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold41082 SAMTools SNP 40178 40178 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41082 SAMTools SNP 44368 44368 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.7e-10%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C134:47 scaffold41082 SAMTools SNP 57793 57793 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41082 SAMTools SNP 87209 87209 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold41082 SAMTools SNP 87272 87272 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41082 SAMTools SNP 87800 87800 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold41082 SAMTools SNP 87880 87880 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.35%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C180:73 scaffold41082 SAMTools SNP 87886 87886 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C213:72 scaffold41082 SAMTools SNP 91071 91071 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold41082 SAMTools SNP 91778 91778 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.61%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41082 SAMTools SNP 91805 91805 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41082 SAMTools SNP 91880 91880 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.64%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C207:99 scaffold41082 SAMTools SNP 91892 91892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold41082 SAMTools SNP 100071 100071 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C51%2C0%2C9%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.58%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold41082 SAMTools SNP 100161 100161 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold41082 SAMTools SNP 100539 100539 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.5%2C0.0097%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold41082 SAMTools SNP 100921 100921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41082 SAMTools SNP 100941 100941 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41082 SAMTools SNP 101659 101659 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41082 SAMTools SNP 101733 101733 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41082 SAMTools SNP 102900 102900 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41082 SAMTools SNP 103861 103861 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41082 SAMTools SNP 103877 103877 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41082 SAMTools SNP 103894 103894 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41082 SAMTools SNP 105231 105231 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41082 SAMTools SNP 105243 105243 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold41082 SAMTools SNP 106529 106529 65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C228:98 scaffold41082 SAMTools SNP 106925 106925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41086 SAMTools SNP 18811 18811 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41086 SAMTools SNP 32457 32457 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41086 SAMTools SNP 32464 32464 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41086 SAMTools SNP 32640 32640 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C29%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.25%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41086 SAMTools SNP 32658 32658 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold41086 SAMTools SNP 32670 32670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41086 SAMTools SNP 32682 32682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold41086 SAMTools SNP 32688 32688 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C21%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.15%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold41086 SAMTools SNP 33143 33143 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D221%2C34%2C10%2C26%3BMQ%3D50%3BFQ%3D38%3BPV4%3D5.1e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41086 SAMTools SNP 33231 33231 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C250%2C1%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41086 SAMTools SNP 33234 33234 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C178%2C8%2C258%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41086 SAMTools SNP 33917 33917 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41086 SAMTools SNP 33918 33918 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41086 SAMTools SNP 34325 34325 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C8%2C2%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold41086 SAMTools SNP 34375 34375 18 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold41086 SAMTools SNP 34975 34975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C7%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold41086 SAMTools SNP 35001 35001 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41086 SAMTools SNP 35022 35022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41086 SAMTools SNP 35055 35055 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C5%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.25%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold41086 SAMTools SNP 35585 35585 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold41086 SAMTools SNP 35830 35830 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C81%2C101%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.00092%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41086 SAMTools SNP 36339 36339 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C60%2C10%2C19%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.013%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold41086 SAMTools SNP 38038 38038 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C54%2C56%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C8.2e-10%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41086 SAMTools SNP 38439 38439 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C180%2C15%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41086 SAMTools SNP 39882 39882 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41086 SAMTools SNP 40438 40438 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41086 SAMTools SNP 53262 53262 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C20%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1.7e-14%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold41086 SAMTools SNP 54551 54551 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41086 SAMTools SNP 54614 54614 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.21%2C4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold41086 SAMTools SNP 54983 54983 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C149:59 scaffold41086 SAMTools SNP 55843 55843 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold41086 SAMTools SNP 57248 57248 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C0.39%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C141:99 scaffold41086 SAMTools SNP 57260 57260 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C0.25%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C85:88 scaffold41086 SAMTools SNP 57851 57851 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41086 SAMTools SNP 57860 57860 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41086 SAMTools SNP 57941 57941 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41086 SAMTools SNP 58783 58783 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41086 SAMTools SNP 58834 58834 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41086 SAMTools SNP 59208 59208 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41086 SAMTools SNP 59335 59335 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41086 SAMTools SNP 59867 59867 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41086 SAMTools SNP 61067 61067 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41086 SAMTools SNP 62729 62729 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41086 SAMTools SNP 63087 63087 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41086 SAMTools SNP 63283 63283 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41086 SAMTools SNP 63339 63339 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold41086 SAMTools SNP 64209 64209 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41086 SAMTools SNP 64221 64221 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41086 SAMTools SNP 64593 64593 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41086 SAMTools SNP 64963 64963 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41086 SAMTools SNP 102977 102977 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41090 SAMTools SNP 56760 56760 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41090 SAMTools SNP 56815 56815 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41090 SAMTools SNP 69749 69749 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold41090 SAMTools SNP 100509 100509 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D44%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C230:54 scaffold41090 SAMTools SNP 102078 102078 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.048%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C225:42 scaffold41090 SAMTools SNP 102736 102736 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D49%3BFQ%3D92%3BPV4%3D1%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C194:99 scaffold41090 SAMTools SNP 105490 105490 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold41136 SAMTools SNP 18593 18593 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.62%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold41136 SAMTools SNP 18665 18665 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C190:99 scaffold41136 SAMTools SNP 21243 21243 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C43%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41136 SAMTools SNP 25589 25589 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.32%2C0.48%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41136 SAMTools SNP 48741 48741 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C23%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41136 SAMTools SNP 53668 53668 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C22%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41136 SAMTools SNP 61949 61949 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold41136 SAMTools SNP 62001 62001 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold41136 SAMTools SNP 62204 62204 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold41136 SAMTools SNP 64267 64267 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.52%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41136 SAMTools SNP 65710 65710 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.57%2C5.9e-11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C225:36 scaffold41136 SAMTools SNP 67455 67455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41136 SAMTools SNP 73366 73366 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C179:99 scaffold41136 SAMTools SNP 92246 92246 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.021%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold41136 SAMTools SNP 92591 92591 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold41136 SAMTools SNP 93528 93528 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C102:80 scaffold41136 SAMTools SNP 93682 93682 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.24%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold41136 SAMTools SNP 94328 94328 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.2e-09%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold41136 SAMTools SNP 94398 94398 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41136 SAMTools SNP 94574 94574 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41136 SAMTools SNP 95262 95262 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold41136 SAMTools SNP 96454 96454 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold41136 SAMTools SNP 102394 102394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41136 SAMTools SNP 102900 102900 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41136 SAMTools SNP 102903 102903 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41136 SAMTools SNP 104960 104960 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C0.00011%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C148:99 scaffold41136 SAMTools SNP 105076 105076 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C2e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold41162 SAMTools SNP 5407 5407 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41162 SAMTools SNP 6285 6285 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41162 SAMTools SNP 6418 6418 33.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold41162 SAMTools SNP 6462 6462 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41162 SAMTools SNP 58399 58399 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 5109 5109 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 5177 5177 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41164 SAMTools SNP 5294 5294 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold41164 SAMTools SNP 11813 11813 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold41164 SAMTools SNP 11825 11825 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold41164 SAMTools SNP 12636 12636 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41164 SAMTools SNP 12687 12687 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C135:99 scaffold41164 SAMTools SNP 12702 12702 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.4%2C0.083%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C174:99 scaffold41164 SAMTools SNP 14080 14080 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41164 SAMTools SNP 14105 14105 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00041%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41164 SAMTools SNP 14954 14954 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41164 SAMTools SNP 14960 14960 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C35:38 scaffold41164 SAMTools SNP 21063 21063 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41164 SAMTools SNP 22528 22528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41164 SAMTools SNP 22566 22566 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.47%2C0.06%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C183:79 scaffold41164 SAMTools SNP 23345 23345 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41164 SAMTools SNP 23475 23475 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 23950 23950 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 26140 26140 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold41164 SAMTools SNP 26233 26233 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold41164 SAMTools SNP 26395 26395 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.32%2C7.2e-25%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold41164 SAMTools SNP 26497 26497 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C12%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.27%2C5.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold41164 SAMTools SNP 26755 26755 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41164 SAMTools SNP 27349 27349 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C21%2C11%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C7.5e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C105:99 scaffold41164 SAMTools SNP 27502 27502 62.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold41164 SAMTools SNP 28301 28301 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold41164 SAMTools SNP 28522 28522 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41164 SAMTools SNP 28612 28612 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.62%2C1.3e-22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41164 SAMTools SNP 28681 28681 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.45%2C0.051%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C87:90 scaffold41164 SAMTools SNP 28789 28789 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C21%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.24%2C1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold41164 SAMTools SNP 28831 28831 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C18%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.77%2C5.2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41164 SAMTools SNP 30541 30541 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C227:39 scaffold41164 SAMTools SNP 31147 31147 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C2.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold41164 SAMTools SNP 31702 31702 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C42%2C0:81 scaffold41164 SAMTools SNP 31920 31920 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C7.1e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41164 SAMTools SNP 32291 32291 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C27%2C0:51 scaffold41164 SAMTools SNP 32977 32977 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41164 SAMTools SNP 33010 33010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41164 SAMTools SNP 33559 33559 222 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0%2C252%2C37%2C249:99 scaffold41164 SAMTools SNP 33699 33699 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C7%2C13%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold41164 SAMTools SNP 41493 41493 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C10%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C238%2C0:99 scaffold41164 SAMTools SNP 43667 43667 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C97%2C35%2C32%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0022%2C3.3e-38%2C0.25%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold41164 SAMTools SNP 44418 44418 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C120%2C109%2C30%3BMQ%3D44%3BFQ%3D225%3BPV4%3D7.4e-14%2C1%2C5.9e-41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41164 SAMTools SNP 44988 44988 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C203%2C19%2C32%3BMQ%3D44%3BFQ%3D76%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold41164 SAMTools SNP 45015 45015 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C176%2C22%2C31%3BMQ%3D45%3BFQ%3D216%3BPV4%3D0.01%2C1%2C1%2C7.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold41164 SAMTools SNP 45060 45060 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41164 SAMTools SNP 45084 45084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C72%2C3%2C43%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.74%2C6.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41164 SAMTools SNP 45125 45125 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C236:99 scaffold41164 SAMTools SNP 45481 45481 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold41164 SAMTools SNP 45536 45536 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.048%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41164 SAMTools SNP 45580 45580 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41164 SAMTools SNP 45614 45614 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C173:99 scaffold41164 SAMTools SNP 51002 51002 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8005%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3315%2C0%2C4678%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.093%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41164 SAMTools SNP 51050 51050 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1963%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C722%2C154%2C883%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00045%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41164 SAMTools SNP 52341 52341 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C57%2C0:83 scaffold41164 SAMTools SNP 54318 54318 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2013%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D719%2C430%2C357%2C326%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C2e-11%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41164 SAMTools SNP 54341 54341 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2897%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C122%2C154%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41164 SAMTools SNP 68105 68105 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41164 SAMTools SNP 71162 71162 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41164 SAMTools SNP 71279 71279 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold41164 SAMTools SNP 71292 71292 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41164 SAMTools SNP 72302 72302 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold41164 SAMTools SNP 72386 72386 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41164 SAMTools SNP 72392 72392 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C3.2e-05%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C138:62 scaffold41164 SAMTools SNP 83816 83816 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41164 SAMTools SNP 83870 83870 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41164 SAMTools SNP 84784 84784 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 85621 85621 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41164 SAMTools SNP 85637 85637 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41164 SAMTools SNP 85692 85692 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold41164 SAMTools SNP 96129 96129 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41164 SAMTools SNP 99859 99859 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41174 SAMTools SNP 1396 1396 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41174 SAMTools SNP 79094 79094 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.59%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold41174 SAMTools SNP 90378 90378 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41174 SAMTools SNP 104590 104590 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 24479 24479 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 24540 24540 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold412 SAMTools SNP 25558 25558 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold412 SAMTools SNP 46893 46893 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold412 SAMTools SNP 49555 49555 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold412 SAMTools SNP 68604 68604 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 68809 68809 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 72200 72200 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 72228 72228 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 76349 76349 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 77160 77160 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold412 SAMTools SNP 88849 88849 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold412 SAMTools SNP 88992 88992 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold412 SAMTools SNP 89000 89000 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold412 SAMTools SNP 89046 89046 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold412 SAMTools SNP 93419 93419 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 104912 104912 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold412 SAMTools SNP 122877 122877 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold412 SAMTools SNP 122905 122905 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold412 SAMTools SNP 127054 127054 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 132648 132648 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold412 SAMTools SNP 151649 151649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold412 SAMTools SNP 152956 152956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold412 SAMTools SNP 152957 152957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold412 SAMTools SNP 155094 155094 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C37%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold412 SAMTools SNP 156061 156061 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 160711 160711 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold412 SAMTools SNP 160714 160714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold412 SAMTools SNP 163554 163554 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold412 SAMTools SNP 166788 166788 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold412 SAMTools SNP 168871 168871 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C123%2C0:99 scaffold412 SAMTools SNP 169019 169019 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C63%2C0:99 scaffold412 SAMTools SNP 192268 192268 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 192326 192326 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold412 SAMTools SNP 192747 192747 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold412 SAMTools SNP 193032 193032 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold412 SAMTools SNP 201560 201560 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold412 SAMTools SNP 202597 202597 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 203680 203680 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 205194 205194 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold412 SAMTools SNP 206236 206236 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 227142 227142 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C31%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.23%2C2.7e-32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold412 SAMTools SNP 227541 227541 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C1%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.65%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold412 SAMTools SNP 227589 227589 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.69%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold412 SAMTools SNP 227940 227940 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.28%2C2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold412 SAMTools SNP 228881 228881 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C23%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.23%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold412 SAMTools SNP 228893 228893 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold412 SAMTools SNP 228929 228929 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C27%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold412 SAMTools SNP 230809 230809 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.14%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold412 SAMTools SNP 233560 233560 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C46%2C41%2C23%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.047%2C3.4e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold412 SAMTools SNP 233785 233785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C230%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold412 SAMTools SNP 234231 234231 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C197%2C3%2C39%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.067%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold412 SAMTools SNP 234272 234272 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold412 SAMTools SNP 234283 234283 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold412 SAMTools SNP 234739 234739 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D10%2C26%2C35%2C266%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.016%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold412 SAMTools SNP 235041 235041 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C274%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold412 SAMTools SNP 235089 235089 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.22%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold412 SAMTools SNP 237603 237603 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C54%2C0:99 scaffold412 SAMTools SNP 240159 240159 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold412 SAMTools SNP 240323 240323 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C29%2C37%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 240572 240572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold412 SAMTools SNP 241417 241417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C27%2C51%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.36%2C1.5e-05%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 243614 243614 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D870%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D407%2C0%2C441%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 245626 245626 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 249195 249195 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 249723 249723 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.037%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold412 SAMTools SNP 250431 250431 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold412 SAMTools SNP 250868 250868 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold412 SAMTools SNP 250895 250895 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.12%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold412 SAMTools SNP 252068 252068 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.029%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C195:99 scaffold412 SAMTools SNP 252107 252107 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold412 SAMTools SNP 252110 252110 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold412 SAMTools SNP 255578 255578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C19%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 256149 256149 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C8%2C6%2C0%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D0.31%2C0.0033%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold412 SAMTools SNP 256167 256167 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C2%2C9%3BMQ%3D49%3BFQ%3D132%3BPV4%3D0.00055%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold412 SAMTools SNP 256176 256176 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C6%2C2%3BMQ%3D49%3BFQ%3D55%3BPV4%3D0.028%2C2.3e-06%2C0.053%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold412 SAMTools SNP 256191 256191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 256689 256689 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C75%2C61%2C57%3BMQ%3D49%3BFQ%3D224%3BPV4%3D8.6e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold412 SAMTools SNP 257297 257297 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C3%2C12%3BMQ%3D38%3BFQ%3D-41%3BPV4%3D0.0007%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold412 SAMTools SNP 257309 257309 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C3%2C4%3BMQ%3D30%3BFQ%3D-32%3BPV4%3D0.07%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C5%2C0:9 scaffold412 SAMTools SNP 261200 261200 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold412 SAMTools SNP 261221 261221 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold412 SAMTools SNP 261564 261564 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold412 SAMTools SNP 261585 261585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold412 SAMTools SNP 261857 261857 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 261881 261881 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold412 SAMTools SNP 261903 261903 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 262070 262070 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold412 SAMTools SNP 262109 262109 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold412 SAMTools SNP 262615 262615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold412 SAMTools SNP 262809 262809 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C22%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold412 SAMTools SNP 262824 262824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.041%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 263018 263018 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold412 SAMTools SNP 266289 266289 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 269323 269323 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold412 SAMTools SNP 269614 269614 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 269635 269635 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 270461 270461 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold412 SAMTools SNP 270500 270500 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.36%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold412 SAMTools SNP 270758 270758 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C219:99 scaffold412 SAMTools SNP 271015 271015 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 271033 271033 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 271054 271054 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 271639 271639 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold412 SAMTools SNP 272275 272275 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.06%2C6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold412 SAMTools SNP 272380 272380 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold412 SAMTools SNP 272756 272756 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold412 SAMTools SNP 273037 273037 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C253:99 scaffold412 SAMTools SNP 273092 273092 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold412 SAMTools SNP 274822 274822 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold412 SAMTools SNP 274846 274846 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold412 SAMTools SNP 274915 274915 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C12%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold412 SAMTools SNP 275220 275220 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 276317 276317 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 277010 277010 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.059%2C5.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C1%2C0:4 scaffold412 SAMTools SNP 277106 277106 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold412 SAMTools SNP 277115 277115 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.17%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C237:99 scaffold412 SAMTools SNP 282462 282462 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1248%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold412 SAMTools SNP 282513 282513 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1507%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C163%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.7e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C255%2C0:99 scaffold412 SAMTools SNP 283647 283647 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C215:99 scaffold412 SAMTools SNP 283683 283683 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.45%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold412 SAMTools SNP 286692 286692 65.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold412 SAMTools SNP 286787 286787 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold412 SAMTools SNP 287608 287608 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.24%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C234:85 scaffold412 SAMTools SNP 289273 289273 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold412 SAMTools SNP 290478 290478 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold412 SAMTools SNP 328174 328174 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 333785 333785 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.3%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C99:99 scaffold412 SAMTools SNP 337044 337044 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 338994 338994 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold412 SAMTools SNP 339063 339063 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 346164 346164 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold412 SAMTools SNP 346471 346471 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.027%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold412 SAMTools SNP 347274 347274 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold412 SAMTools SNP 347545 347545 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold412 SAMTools SNP 347580 347580 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C230:40 scaffold412 SAMTools SNP 347591 347591 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold412 SAMTools SNP 347656 347656 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold412 SAMTools SNP 357223 357223 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold412 SAMTools SNP 357240 357240 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold412 SAMTools SNP 357241 357241 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 359568 359568 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold412 SAMTools SNP 359571 359571 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C180:99 scaffold412 SAMTools SNP 360003 360003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold412 SAMTools SNP 360023 360023 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 360081 360081 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.66%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold412 SAMTools SNP 360397 360397 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 360888 360888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold412 SAMTools SNP 361760 361760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C30%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold412 SAMTools SNP 361780 361780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold412 SAMTools SNP 362019 362019 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D46%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C201:67 scaffold412 SAMTools SNP 362055 362055 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D40%3BFQ%3D49%3BPV4%3D1%2C1%2C0.27%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C108:79 scaffold412 SAMTools SNP 362058 362058 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C0.36%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C78:40 scaffold412 SAMTools SNP 364112 364112 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold412 SAMTools SNP 375188 375188 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 397925 397925 5.47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-7.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C21:26 scaffold412 SAMTools SNP 429236 429236 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C24%3BMQ%3D47%3BFQ%3D-52%3BPV4%3D1%2C1e-05%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C25%2C0:47 scaffold412 SAMTools SNP 433021 433021 19.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold412 SAMTools SNP 433313 433313 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00065%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C205:46 scaffold412 SAMTools SNP 433720 433720 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold412 SAMTools SNP 433761 433761 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold412 SAMTools SNP 436274 436274 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold412 SAMTools SNP 436296 436296 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.16%2C0.14%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold412 SAMTools SNP 436551 436551 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold412 SAMTools SNP 438899 438899 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold412 SAMTools SNP 459211 459211 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C39%2C0:75 scaffold412 SAMTools SNP 459218 459218 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C39%2C0:75 scaffold412 SAMTools SNP 459362 459362 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 460491 460491 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold412 SAMTools SNP 460975 460975 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold412 SAMTools SNP 461005 461005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-12%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 461020 461020 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold412 SAMTools SNP 461083 461083 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold412 SAMTools SNP 462464 462464 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.54%2C0.016%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold412 SAMTools SNP 462592 462592 45.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold412 SAMTools SNP 468905 468905 88.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C21%2C0:39 scaffold412 SAMTools SNP 469844 469844 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold412 SAMTools SNP 469910 469910 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C27%2C0:51 scaffold412 SAMTools SNP 470660 470660 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C9.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold412 SAMTools SNP 470693 470693 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C54%2C0:99 scaffold412 SAMTools SNP 470855 470855 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold412 SAMTools SNP 470987 470987 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold412 SAMTools SNP 471082 471082 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.14%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C157:96 scaffold412 SAMTools SNP 475711 475711 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold412 SAMTools SNP 476113 476113 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold412 SAMTools SNP 476137 476137 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C38:41 scaffold412 SAMTools SNP 476822 476822 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C26:29 scaffold412 SAMTools SNP 477203 477203 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold412 SAMTools SNP 477271 477271 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold412 SAMTools SNP 477390 477390 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold412 SAMTools SNP 477410 477410 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold412 SAMTools SNP 479061 479061 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold412 SAMTools SNP 487144 487144 94.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold412 SAMTools SNP 488738 488738 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold412 SAMTools SNP 493678 493678 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold412 SAMTools SNP 495563 495563 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D4.77%3BPV4%3D0.17%2C0.00027%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold412 SAMTools SNP 495616 495616 5.47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5015%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D45%3BFQ%3D-6.39%3BPV4%3D1%2C0.033%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C22:27 scaffold41206 SAMTools SNP 13572 13572 33.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold41206 SAMTools SNP 16985 16985 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41206 SAMTools SNP 17003 17003 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41206 SAMTools SNP 28316 28316 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41206 SAMTools SNP 28322 28322 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41206 SAMTools SNP 40824 40824 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold41206 SAMTools SNP 40828 40828 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold41206 SAMTools SNP 41512 41512 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41206 SAMTools SNP 42018 42018 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.4e-29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold41206 SAMTools SNP 43183 43183 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41206 SAMTools SNP 43702 43702 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold41206 SAMTools SNP 53687 53687 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41206 SAMTools SNP 62492 62492 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold41206 SAMTools SNP 99078 99078 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.32%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C62:65 scaffold41206 SAMTools SNP 99082 99082 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold41206 SAMTools SNP 99105 99105 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C62:65 scaffold41206 SAMTools SNP 103859 103859 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C232:99 scaffold41206 SAMTools SNP 105554 105554 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.67%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold41206 SAMTools SNP 107172 107172 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41210 SAMTools SNP 1328 1328 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.074%2C1.4e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C47:50 scaffold41210 SAMTools SNP 1382 1382 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41210 SAMTools SNP 1716 1716 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41210 SAMTools SNP 1767 1767 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.37%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C107:66 scaffold41210 SAMTools SNP 1770 1770 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.31%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold41210 SAMTools SNP 1847 1847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41210 SAMTools SNP 2578 2578 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41210 SAMTools SNP 3272 3272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C15%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold41210 SAMTools SNP 3314 3314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41210 SAMTools SNP 3942 3942 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41210 SAMTools SNP 3990 3990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41210 SAMTools SNP 7949 7949 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41210 SAMTools SNP 8286 8286 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 15312 15312 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41210 SAMTools SNP 16622 16622 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C3%2C16%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.35%2C2.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold41210 SAMTools SNP 17095 17095 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C87%2C45%3BMQ%3D50%3BFQ%3D98%3BPV4%3D6e-06%2C4.2e-143%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C168:99 scaffold41210 SAMTools SNP 17236 17236 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C255%2C0:99 scaffold41210 SAMTools SNP 17802 17802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C30%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41210 SAMTools SNP 18696 18696 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold41210 SAMTools SNP 24440 24440 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.063%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold41210 SAMTools SNP 24507 24507 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41210 SAMTools SNP 24834 24834 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41210 SAMTools SNP 25116 25116 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C90%2C0:99 scaffold41210 SAMTools SNP 25473 25473 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C8%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.33%2C0.22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold41210 SAMTools SNP 25858 25858 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C22%3BMQ%3D49%3BFQ%3D63%3BPV4%3D0.0022%2C0.14%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold41210 SAMTools SNP 25949 25949 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C8.1e-06%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C139:81 scaffold41210 SAMTools SNP 25961 25961 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41210 SAMTools SNP 27057 27057 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C0.33%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold41210 SAMTools SNP 27441 27441 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41210 SAMTools SNP 29687 29687 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41210 SAMTools SNP 29688 29688 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41210 SAMTools SNP 29728 29728 8.22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold41210 SAMTools SNP 30907 30907 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41210 SAMTools SNP 30932 30932 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold41210 SAMTools SNP 31465 31465 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41210 SAMTools SNP 31480 31480 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41210 SAMTools SNP 31779 31779 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.37%2C0.0029%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold41210 SAMTools SNP 31791 31791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41210 SAMTools SNP 32160 32160 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C4%2C38%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.29%2C2.8e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold41210 SAMTools SNP 32205 32205 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold41210 SAMTools SNP 32538 32538 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C242:99 scaffold41210 SAMTools SNP 33045 33045 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.13%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C254:99 scaffold41210 SAMTools SNP 33088 33088 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold41210 SAMTools SNP 33106 33106 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C79%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.45%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold41210 SAMTools SNP 34409 34409 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C22%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.61%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold41210 SAMTools SNP 36381 36381 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 36682 36682 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C226:61 scaffold41210 SAMTools SNP 37212 37212 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 49203 49203 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold41210 SAMTools SNP 49405 49405 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold41210 SAMTools SNP 49551 49551 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.61%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41210 SAMTools SNP 59917 59917 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 60059 60059 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41210 SAMTools SNP 60079 60079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold41210 SAMTools SNP 61045 61045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C10%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41210 SAMTools SNP 62236 62236 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C10%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41210 SAMTools SNP 62257 62257 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold41210 SAMTools SNP 62263 62263 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C11%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.36%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold41210 SAMTools SNP 65372 65372 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41210 SAMTools SNP 65399 65399 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41210 SAMTools SNP 65603 65603 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41210 SAMTools SNP 65622 65622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold41210 SAMTools SNP 66432 66432 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C55%2C0%2C50%3BMQ%3D50%3BFQ%3D208%3BPV4%3D6.4e-07%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold41210 SAMTools SNP 66459 66459 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41210 SAMTools SNP 66926 66926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-06%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41210 SAMTools SNP 66938 66938 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C7%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-07%2C1%2C1%2C4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41210 SAMTools SNP 66941 66941 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-08%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41210 SAMTools SNP 67971 67971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41210 SAMTools SNP 71897 71897 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41210 SAMTools SNP 72663 72663 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold41210 SAMTools SNP 74750 74750 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C63:66 scaffold41210 SAMTools SNP 78027 78027 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 78161 78161 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C236:99 scaffold41210 SAMTools SNP 79368 79368 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41210 SAMTools SNP 87895 87895 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 87928 87928 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41210 SAMTools SNP 88219 88219 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 88239 88239 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41210 SAMTools SNP 88421 88421 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold41210 SAMTools SNP 88458 88458 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41210 SAMTools SNP 89004 89004 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C183:99 scaffold41210 SAMTools SNP 89023 89023 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.018%2C0.15%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C158:82 scaffold41210 SAMTools SNP 89422 89422 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold41210 SAMTools SNP 89443 89443 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold41210 SAMTools SNP 89453 89453 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41212 SAMTools SNP 109 109 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41212 SAMTools SNP 7531 7531 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.4%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold41212 SAMTools SNP 15190 15190 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold41212 SAMTools SNP 16162 16162 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.47%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C109:28 scaffold41212 SAMTools SNP 16511 16511 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C3%2C25%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.6%2C1%2C1%2C3.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold41212 SAMTools SNP 17366 17366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41212 SAMTools SNP 19197 19197 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.036%2C0.31%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41212 SAMTools SNP 22337 22337 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C28%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.38%2C0.32%2C0.25%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41212 SAMTools SNP 22385 22385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C8%3BMQ%3D49%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold41212 SAMTools SNP 22509 22509 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C27%2C0:51 scaffold41212 SAMTools SNP 22613 22613 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41212 SAMTools SNP 54376 54376 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold41212 SAMTools SNP 61684 61684 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.072%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold41212 SAMTools SNP 61835 61835 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C60%2C0:99 scaffold41212 SAMTools SNP 77357 77357 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41212 SAMTools SNP 102408 102408 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41212 SAMTools SNP 102768 102768 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41214 SAMTools SNP 12821 12821 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold41214 SAMTools SNP 12842 12842 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41214 SAMTools SNP 22808 22808 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41214 SAMTools SNP 33560 33560 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41214 SAMTools SNP 79103 79103 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold41220 SAMTools SNP 8884 8884 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 8923 8923 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 17285 17285 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41220 SAMTools SNP 17294 17294 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41220 SAMTools SNP 17786 17786 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41220 SAMTools SNP 18599 18599 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41220 SAMTools SNP 19444 19444 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41220 SAMTools SNP 19465 19465 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 19486 19486 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold41220 SAMTools SNP 21089 21089 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C8%2C10%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41220 SAMTools SNP 21175 21175 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C23%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.37%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41220 SAMTools SNP 21965 21965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C36%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41220 SAMTools SNP 22519 22519 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C193:99 scaffold41220 SAMTools SNP 22555 22555 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.42%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C175:99 scaffold41220 SAMTools SNP 22736 22736 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41220 SAMTools SNP 22832 22832 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold41220 SAMTools SNP 22856 22856 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41220 SAMTools SNP 23218 23218 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41220 SAMTools SNP 23232 23232 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C0.025%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold41220 SAMTools SNP 23521 23521 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41220 SAMTools SNP 23551 23551 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41220 SAMTools SNP 23572 23572 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41220 SAMTools SNP 23831 23831 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41220 SAMTools SNP 24598 24598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41220 SAMTools SNP 26043 26043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41220 SAMTools SNP 26061 26061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41220 SAMTools SNP 27007 27007 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 27016 27016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 31839 31839 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 47730 47730 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 48156 48156 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C227:99 scaffold41220 SAMTools SNP 48159 48159 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C209:88 scaffold41220 SAMTools SNP 48585 48585 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41220 SAMTools SNP 48603 48603 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41220 SAMTools SNP 74696 74696 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 74910 74910 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 87378 87378 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41220 SAMTools SNP 89581 89581 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D45%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C42%2C0:81 scaffold41220 SAMTools SNP 89605 89605 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D46%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41220 SAMTools SNP 89623 89623 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C2%2C5%3BMQ%3D47%3BFQ%3D16.1%3BPV4%3D0.00026%2C1.2e-06%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C12%2C235:46 scaffold41220 SAMTools SNP 90185 90185 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C6%2C3%3BMQ%3D48%3BFQ%3D215%3BPV4%3D0.1%2C0.45%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41220 SAMTools SNP 94030 94030 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold41220 SAMTools SNP 94066 94066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41220 SAMTools SNP 94322 94322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41220 SAMTools SNP 96591 96591 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.061%2C0.014%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold41220 SAMTools SNP 98199 98199 21.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold41220 SAMTools SNP 112285 112285 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41228 SAMTools SNP 4295 4295 7.03 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C21%2C0:24 scaffold41228 SAMTools SNP 44590 44590 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C41%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold41228 SAMTools SNP 44654 44654 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41228 SAMTools SNP 45559 45559 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41228 SAMTools SNP 47404 47404 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41228 SAMTools SNP 48861 48861 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41228 SAMTools SNP 62237 62237 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41228 SAMTools SNP 62548 62548 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41228 SAMTools SNP 63528 63528 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41228 SAMTools SNP 68231 68231 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C21%2C0:39 scaffold41228 SAMTools SNP 68668 68668 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C48%2C0:93 scaffold41228 SAMTools SNP 69134 69134 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold41228 SAMTools SNP 71512 71512 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41228 SAMTools SNP 71516 71516 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41228 SAMTools SNP 71549 71549 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41228 SAMTools SNP 72341 72341 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41228 SAMTools SNP 72587 72587 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41228 SAMTools SNP 72911 72911 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41228 SAMTools SNP 72959 72959 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41228 SAMTools SNP 73343 73343 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41228 SAMTools SNP 92368 92368 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41228 SAMTools SNP 92412 92412 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41228 SAMTools SNP 92413 92413 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41228 SAMTools SNP 94170 94170 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41228 SAMTools SNP 94173 94173 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41228 SAMTools SNP 94176 94176 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.093%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C174:42 scaffold41228 SAMTools SNP 94690 94690 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41228 SAMTools SNP 94742 94742 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold41228 SAMTools SNP 95443 95443 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41228 SAMTools SNP 95467 95467 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C139:99 scaffold41228 SAMTools SNP 95946 95946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41228 SAMTools SNP 96051 96051 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.25%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold41228 SAMTools SNP 96193 96193 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41228 SAMTools SNP 96394 96394 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41228 SAMTools SNP 96411 96411 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C1.6e-06%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold41228 SAMTools SNP 96706 96706 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41228 SAMTools SNP 96720 96720 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41228 SAMTools SNP 97161 97161 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.014%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41228 SAMTools SNP 98257 98257 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C69:34 scaffold41228 SAMTools SNP 98668 98668 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.54%2C0.048%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41228 SAMTools SNP 98674 98674 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41228 SAMTools SNP 101385 101385 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41228 SAMTools SNP 102906 102906 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold41228 SAMTools SNP 103032 103032 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C12%2C0:21 scaffold41228 SAMTools SNP 103044 103044 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41228 SAMTools SNP 103423 103423 223 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.35%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold41228 SAMTools SNP 103850 103850 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold41228 SAMTools SNP 103900 103900 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C0%2C11%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.011%2C1e-13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41228 SAMTools SNP 103936 103936 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold41228 SAMTools SNP 103978 103978 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41228 SAMTools SNP 104000 104000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41228 SAMTools SNP 105136 105136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C11%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold41228 SAMTools SNP 105160 105160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C9%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold41228 SAMTools SNP 105181 105181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C73%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C0.32%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41228 SAMTools SNP 105190 105190 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C0%2C70%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-06%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41228 SAMTools SNP 105487 105487 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C45%2C85%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-13%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41228 SAMTools SNP 107995 107995 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D34%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41228 SAMTools SNP 109409 109409 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C0%3BMQ%3D35%3BFQ%3D43%3BPV4%3D0.21%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C170:73 scaffold41228 SAMTools SNP 109446 109446 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold41228 SAMTools SNP 109491 109491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41228 SAMTools SNP 112515 112515 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold41242 SAMTools SNP 44767 44767 39.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold41242 SAMTools SNP 55891 55891 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41242 SAMTools SNP 64770 64770 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41242 SAMTools SNP 64811 64811 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41242 SAMTools SNP 68286 68286 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold41242 SAMTools SNP 74378 74378 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41242 SAMTools SNP 75110 75110 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.042%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold41242 SAMTools SNP 75159 75159 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.5%2C0.084%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold41242 SAMTools SNP 79542 79542 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41242 SAMTools SNP 81256 81256 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41242 SAMTools SNP 81434 81434 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold41242 SAMTools SNP 90143 90143 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41242 SAMTools SNP 92571 92571 25.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold41242 SAMTools SNP 92658 92658 44.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold41242 SAMTools SNP 92906 92906 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C232%2C0:99 scaffold41242 SAMTools SNP 108153 108153 12 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold41248 SAMTools SNP 12501 12501 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41248 SAMTools SNP 13800 13800 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C42%2C0:81 scaffold41248 SAMTools SNP 13875 13875 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C222:48 scaffold41248 SAMTools SNP 15135 15135 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold41248 SAMTools SNP 19472 19472 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D338%2C40%2C116%2C15%3BMQ%3D46%3BFQ%3D204%3BPV4%3D0.75%2C2.3e-126%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold41248 SAMTools SNP 19631 19631 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C65%2C28%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.7%2C3.7e-114%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold41248 SAMTools SNP 20599 20599 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41248 SAMTools SNP 20601 20601 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41248 SAMTools SNP 20614 20614 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41296 SAMTools SNP 101 101 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41296 SAMTools SNP 5496 5496 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold41296 SAMTools SNP 5685 5685 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold41296 SAMTools SNP 6035 6035 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C30%2C0:56 scaffold41296 SAMTools SNP 6083 6083 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.57%2C9.4e-11%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C225:33 scaffold41296 SAMTools SNP 7528 7528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41296 SAMTools SNP 11757 11757 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold41296 SAMTools SNP 21128 21128 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41296 SAMTools SNP 21148 21148 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C81:28 scaffold41296 SAMTools SNP 21160 21160 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.27%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold41296 SAMTools SNP 26512 26512 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41296 SAMTools SNP 28560 28560 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41296 SAMTools SNP 30826 30826 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold41296 SAMTools SNP 30827 30827 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C10%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold41296 SAMTools SNP 30847 30847 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold41296 SAMTools SNP 33503 33503 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41296 SAMTools SNP 36207 36207 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 36229 36229 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C0%2C24%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.55%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold41296 SAMTools SNP 37685 37685 17.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold41296 SAMTools SNP 37745 37745 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C51%2C0:86 scaffold41296 SAMTools SNP 37871 37871 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41296 SAMTools SNP 37963 37963 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C27%2C0:51 scaffold41296 SAMTools SNP 38373 38373 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold41296 SAMTools SNP 38593 38593 29.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold41296 SAMTools SNP 39628 39628 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.1e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C51:54 scaffold41296 SAMTools SNP 39915 39915 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C18%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.016%2C1.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold41296 SAMTools SNP 48776 48776 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41296 SAMTools SNP 50249 50249 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41296 SAMTools SNP 50274 50274 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C4%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.65%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold41296 SAMTools SNP 51191 51191 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41296 SAMTools SNP 51730 51730 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41296 SAMTools SNP 51808 51808 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D4.13%3BPV4%3D1%2C1%2C0.36%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C29:32 scaffold41296 SAMTools SNP 51832 51832 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C21%2C0:39 scaffold41296 SAMTools SNP 58368 58368 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41296 SAMTools SNP 60492 60492 73.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold41296 SAMTools SNP 60675 60675 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41296 SAMTools SNP 60680 60680 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C81%2C0:99 scaffold41296 SAMTools SNP 61181 61181 201 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C1%2C20%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold41296 SAMTools SNP 61404 61404 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.49%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41296 SAMTools SNP 61409 61409 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C199:99 scaffold41296 SAMTools SNP 61447 61447 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41296 SAMTools SNP 64885 64885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C3%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41296 SAMTools SNP 65265 65265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C28%2C19%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 66037 66037 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41296 SAMTools SNP 66061 66061 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold41296 SAMTools SNP 66151 66151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold41296 SAMTools SNP 66889 66889 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C240:99 scaffold41296 SAMTools SNP 66915 66915 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41296 SAMTools SNP 66934 66934 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 69715 69715 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.64%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold41296 SAMTools SNP 69727 69727 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.31%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41296 SAMTools SNP 70927 70927 36.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold41296 SAMTools SNP 71001 71001 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41296 SAMTools SNP 71801 71801 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41296 SAMTools SNP 72655 72655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 75117 75117 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.38%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 75121 75121 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C4%2C30%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0022%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 75542 75542 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C7%2C21%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.013%2C0.17%2C0.021%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41296 SAMTools SNP 76829 76829 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41296 SAMTools SNP 76839 76839 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold41296 SAMTools SNP 79601 79601 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41296 SAMTools SNP 80269 80269 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41296 SAMTools SNP 80292 80292 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold41296 SAMTools SNP 86524 86524 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41296 SAMTools SNP 89781 89781 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.53%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold41296 SAMTools SNP 93200 93200 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41296 SAMTools SNP 98453 98453 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41296 SAMTools SNP 98483 98483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41296 SAMTools SNP 98726 98726 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C5%2C28%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.15%2C1.2e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41296 SAMTools SNP 99403 99403 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C8%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold41296 SAMTools SNP 99566 99566 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C93%2C0:99 scaffold41296 SAMTools SNP 99728 99728 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C30%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.7e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41296 SAMTools SNP 99956 99956 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C29%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.79%2C7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold41296 SAMTools SNP 100538 100538 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C114%2C0:99 scaffold41296 SAMTools SNP 101833 101833 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1.9e-07%2C3.1e-11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41296 SAMTools SNP 105603 105603 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C202%2C0:99 scaffold41296 SAMTools SNP 105697 105697 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C23%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.089%2C7.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold41296 SAMTools SNP 109250 109250 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41296 SAMTools SNP 109319 109319 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C32%2C27%2C13%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold413 SAMTools SNP 9794 9794 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.11%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C241:99 scaffold413 SAMTools SNP 10045 10045 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C117:77 scaffold413 SAMTools SNP 10057 10057 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 10083 10083 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C26%3BMQ%3D50%3BFQ%3D15.9%3BPV4%3D1%2C3.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C44:46 scaffold413 SAMTools SNP 10252 10252 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 10255 10255 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 10784 10784 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C134:36 scaffold413 SAMTools SNP 10802 10802 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold413 SAMTools SNP 13771 13771 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C2%2C17%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold413 SAMTools SNP 15531 15531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C22%3BMQ%3D50%3BFQ%3D-142%3BPV4%3D0.43%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C115%2C0:99 scaffold413 SAMTools SNP 16091 16091 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold413 SAMTools SNP 16109 16109 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C9%3BMQ%3D49%3BFQ%3D164%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold413 SAMTools SNP 16516 16516 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold413 SAMTools SNP 16540 16540 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-39%3BPV4%3D1%2C0.0039%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold413 SAMTools SNP 16594 16594 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D48%3BFQ%3D47%3BPV4%3D1%2C1%2C0.13%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold413 SAMTools SNP 16630 16630 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C21%2C0%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.12%2C0.49%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold413 SAMTools SNP 17293 17293 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C8%2C14%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C0.016%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold413 SAMTools SNP 17419 17419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C43%2C17%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.082%2C0.062%2C0.27%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold413 SAMTools SNP 17452 17452 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C40%2C18%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 17958 17958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C32%2C99%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 18538 18538 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C9%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.0029%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 18565 18565 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C66%2C0%2C35%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold413 SAMTools SNP 18579 18579 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C51%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C0.29%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold413 SAMTools SNP 18622 18622 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0330%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C208:28 scaffold413 SAMTools SNP 18796 18796 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C192:66 scaffold413 SAMTools SNP 18817 18817 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold413 SAMTools SNP 18874 18874 14.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold413 SAMTools SNP 18928 18928 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold413 SAMTools SNP 19660 19660 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold413 SAMTools SNP 19832 19832 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 20252 20252 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C16%3BMQ%3D48%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold413 SAMTools SNP 20360 20360 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C1%2C8%3BMQ%3D49%3BFQ%3D115%3BPV4%3D0.52%2C0.0046%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold413 SAMTools SNP 20598 20598 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.18%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold413 SAMTools SNP 20772 20772 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 24086 24086 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C108:77 scaffold413 SAMTools SNP 24094 24094 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C234:99 scaffold413 SAMTools SNP 24477 24477 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C16%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.29%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold413 SAMTools SNP 24881 24881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 24962 24962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 25543 25543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C42%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold413 SAMTools SNP 25555 25555 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C46%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold413 SAMTools SNP 27471 27471 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold413 SAMTools SNP 27849 27849 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C2%2C19%3BMQ%3D48%3BFQ%3D189%3BPV4%3D0.26%2C0.021%2C0.24%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C254:99 scaffold413 SAMTools SNP 27879 27879 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C7%3BMQ%3D49%3BFQ%3D110%3BPV4%3D0.56%2C0.47%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold413 SAMTools SNP 28092 28092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 28736 28736 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C38:41 scaffold413 SAMTools SNP 29220 29220 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 29231 29231 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 29260 29260 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold413 SAMTools SNP 29682 29682 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold413 SAMTools SNP 29781 29781 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C3%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold413 SAMTools SNP 30127 30127 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C26%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 30199 30199 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C5e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 30247 30247 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D0.3%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C26:19 scaffold413 SAMTools SNP 30672 30672 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.13%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold413 SAMTools SNP 30741 30741 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold413 SAMTools SNP 31180 31180 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 31900 31900 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C23%3BMQ%3D43%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold413 SAMTools SNP 31944 31944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C16%2C6%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.017%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold413 SAMTools SNP 32001 32001 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C14%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold413 SAMTools SNP 32036 32036 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold413 SAMTools SNP 32561 32561 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C82:85 scaffold413 SAMTools SNP 33031 33031 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold413 SAMTools SNP 33047 33047 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C151:99 scaffold413 SAMTools SNP 33755 33755 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C5.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C61:64 scaffold413 SAMTools SNP 51827 51827 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold413 SAMTools SNP 77043 77043 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold413 SAMTools SNP 78219 78219 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold413 SAMTools SNP 78511 78511 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C12%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold413 SAMTools SNP 84358 84358 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 84365 84365 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 85588 85588 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.39%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C69:30 scaffold413 SAMTools SNP 86488 86488 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold413 SAMTools SNP 86850 86850 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold413 SAMTools SNP 86976 86976 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold413 SAMTools SNP 90785 90785 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C15%2C0:27 scaffold413 SAMTools SNP 90792 90792 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold413 SAMTools SNP 90828 90828 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 90846 90846 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold413 SAMTools SNP 92648 92648 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold413 SAMTools SNP 92912 92912 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 96460 96460 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 109484 109484 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold413 SAMTools SNP 112569 112569 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold413 SAMTools SNP 112797 112797 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold413 SAMTools SNP 115969 115969 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold413 SAMTools SNP 117087 117087 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold413 SAMTools SNP 117143 117143 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold413 SAMTools SNP 144187 144187 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C30%2C0:57 scaffold413 SAMTools SNP 151013 151013 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 151061 151061 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 151845 151845 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold413 SAMTools SNP 151878 151878 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold413 SAMTools SNP 151939 151939 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold413 SAMTools SNP 152859 152859 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold413 SAMTools SNP 152920 152920 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 228581 228581 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold413 SAMTools SNP 230834 230834 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold413 SAMTools SNP 287227 287227 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 338226 338226 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold413 SAMTools SNP 400008 400008 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold413 SAMTools SNP 444473 444473 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold413 SAMTools SNP 445177 445177 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold413 SAMTools SNP 451853 451853 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 457429 457429 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold413 SAMTools SNP 457434 457434 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold413 SAMTools SNP 460670 460670 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold413 SAMTools SNP 461121 461121 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 461132 461132 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 461208 461208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold413 SAMTools SNP 461222 461222 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold413 SAMTools SNP 461573 461573 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold413 SAMTools SNP 461948 461948 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.47%2C1.5e-10%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C166:56 scaffold413 SAMTools SNP 462059 462059 134 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C138%2C0%2C157%2C112%2C154:99 scaffold413 SAMTools SNP 463347 463347 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C30%2C0:57 scaffold413 SAMTools SNP 463376 463376 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.021%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold413 SAMTools SNP 463602 463602 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 463606 463606 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 463930 463930 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.41%2C0.076%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold413 SAMTools SNP 464748 464748 141 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C30%2C9%2C162%2C0%2C159:39 scaffold413 SAMTools SNP 465419 465419 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold413 SAMTools SNP 465812 465812 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 465826 465826 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 466475 466475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 466496 466496 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 466831 466831 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.49%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold413 SAMTools SNP 468864 468864 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold413 SAMTools SNP 468876 468876 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold413 SAMTools SNP 471222 471222 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 474493 474493 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold413 SAMTools SNP 478004 478004 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold413 SAMTools SNP 479985 479985 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold413 SAMTools SNP 479986 479986 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.01%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C27:30 scaffold413 SAMTools SNP 496689 496689 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold413 SAMTools SNP 496698 496698 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold413 SAMTools SNP 496700 496700 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 500535 500535 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold413 SAMTools SNP 503394 503394 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.4%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold413 SAMTools SNP 503415 503415 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold413 SAMTools SNP 506322 506322 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.2%2C0.035%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold413 SAMTools SNP 506608 506608 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold413 SAMTools SNP 506617 506617 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 506713 506713 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 509405 509405 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C110:41 scaffold413 SAMTools SNP 510801 510801 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold413 SAMTools SNP 510829 510829 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold413 SAMTools SNP 511415 511415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 511429 511429 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 520307 520307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C73%2C37%2C106%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 521345 521345 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C227%2C190%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 521354 521354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D504%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C128%2C102%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 531310 531310 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C123%2C71%2C101%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.00015%2C3.7e-252%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold413 SAMTools SNP 531557 531557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C224%2C190%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 532034 532034 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1148%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C24%2C0:45 scaffold413 SAMTools SNP 532085 532085 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.98%3BPV4%3D1%2C0.0062%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold413 SAMTools SNP 532388 532388 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C447%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C255%2C0:99 scaffold413 SAMTools SNP 535178 535178 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold413 SAMTools SNP 535423 535423 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold413 SAMTools SNP 535777 535777 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold413 SAMTools SNP 554343 554343 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold413 SAMTools SNP 554555 554555 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C27%2C0:51 scaffold413 SAMTools SNP 554792 554792 23.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold413 SAMTools SNP 555003 555003 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C66%2C0:97 scaffold413 SAMTools SNP 555281 555281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold413 SAMTools SNP 555425 555425 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C30%2C0:57 scaffold413 SAMTools SNP 555491 555491 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C45%2C0:87 scaffold413 SAMTools SNP 557914 557914 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C60%2C0:96 scaffold413 SAMTools SNP 559413 559413 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C31%3BMQ%3D48%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold413 SAMTools SNP 561360 561360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C64%2C32%3BMQ%3D39%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 562636 562636 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C5%2C3%3BMQ%3D44%3BFQ%3D48%3BPV4%3D0.37%2C0.21%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold413 SAMTools SNP 562642 562642 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C8%2C0%2C13%3BMQ%3D47%3BFQ%3D94%3BPV4%3D2.9e-09%2C7.8e-06%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold413 SAMTools SNP 562716 562716 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C38:41 scaffold413 SAMTools SNP 563693 563693 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C19%2C17%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.66%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 566639 566639 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold413 SAMTools SNP 568755 568755 84.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C18%2C0:33 scaffold413 SAMTools SNP 571996 571996 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 573643 573643 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold413 SAMTools SNP 573707 573707 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C250:99 scaffold413 SAMTools SNP 574860 574860 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C5%2C222%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0054%2C1%2C1%2C2.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold413 SAMTools SNP 575226 575226 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C80%2C14%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 575912 575912 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C56%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 575973 575973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D210%2C44%2C146%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 577766 577766 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C82%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.074%2C0.11%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 585182 585182 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C26%2C10%2C9%3BMQ%3D47%3BFQ%3D128%3BPV4%3D0.8%2C8.1e-09%2C0.0093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold413 SAMTools SNP 589726 589726 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold413 SAMTools SNP 591330 591330 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold413 SAMTools SNP 595371 595371 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold413 SAMTools SNP 595380 595380 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold413 SAMTools SNP 596051 596051 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold413 SAMTools SNP 598998 598998 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold413 SAMTools SNP 599033 599033 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold413 SAMTools SNP 599049 599049 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C133:77 scaffold413 SAMTools SNP 601089 601089 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold413 SAMTools SNP 601971 601971 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 602043 602043 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C10%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.42%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold413 SAMTools SNP 603292 603292 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C10%2C5%3BMQ%3D40%3BFQ%3D160%3BPV4%3D1%2C1%2C0.38%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold413 SAMTools SNP 603307 603307 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C5%3BMQ%3D37%3BFQ%3D194%3BPV4%3D1%2C0.28%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold413 SAMTools SNP 603603 603603 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C10%2C4%3BMQ%3D20%3BFQ%3D32%3BPV4%3D0.67%2C0.19%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C59:62 scaffold413 SAMTools SNP 604614 604614 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C4%2C0%3BMQ%3D48%3BFQ%3D11.3%3BPV4%3D1%2C0.03%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C211:40 scaffold413 SAMTools SNP 604623 604623 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C21%2C0:39 scaffold413 SAMTools SNP 605238 605238 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C8%3BMQ%3D43%3BFQ%3D138%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C165:99 scaffold413 SAMTools SNP 605280 605280 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold413 SAMTools SNP 605694 605694 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 608091 608091 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold413 SAMTools SNP 609677 609677 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C3%2C0:6 scaffold413 SAMTools SNP 609678 609678 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold413 SAMTools SNP 609689 609689 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D37%3BFQ%3D27%3BPV4%3D0.077%2C0.39%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C180:57 scaffold413 SAMTools SNP 610151 610151 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold413 SAMTools SNP 610270 610270 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold413 SAMTools SNP 610315 610315 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold413 SAMTools SNP 611824 611824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C16%3BMQ%3D30%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold413 SAMTools SNP 611842 611842 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D37%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold413 SAMTools SNP 612029 612029 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C5%2C2%3BMQ%3D45%3BFQ%3D41%3BPV4%3D0.68%2C0.081%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold413 SAMTools SNP 612765 612765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C47%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold413 SAMTools SNP 613264 613264 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 613614 613614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2902%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1399%2C22%2C1456%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.47%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 614716 614716 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7870%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1508%2C2354%2C373%2C199%3BMQ%3D50%3BFQ%3D50%3BPV4%3D7.6e-32%2C2.5e-32%2C1%2C1e-76;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold413 SAMTools SNP 622233 622233 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold413 SAMTools SNP 622579 622579 4.11 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold413 SAMTools SNP 623109 623109 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C30%2C0:57 scaffold413 SAMTools SNP 623983 623983 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold413 SAMTools SNP 625963 625963 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold413 SAMTools SNP 627011 627011 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold413 SAMTools SNP 628605 628605 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C148:99 scaffold413 SAMTools SNP 630666 630666 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.32%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold413 SAMTools SNP 631859 631859 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.55%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold413 SAMTools SNP 631868 631868 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold413 SAMTools SNP 632244 632244 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold413 SAMTools SNP 634046 634046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold413 SAMTools SNP 634105 634105 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.55%2C4e-07%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold413 SAMTools SNP 635389 635389 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C134:99 scaffold413 SAMTools SNP 635442 635442 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0076%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C168:43 scaffold413 SAMTools SNP 635536 635536 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold413 SAMTools SNP 635910 635910 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold413 SAMTools SNP 636161 636161 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold413 SAMTools SNP 636259 636259 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold413 SAMTools SNP 636283 636283 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold413 SAMTools SNP 640479 640479 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C223:99 scaffold413 SAMTools SNP 640632 640632 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold413 SAMTools SNP 640842 640842 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.096%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold413 SAMTools SNP 642247 642247 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 644555 644555 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold413 SAMTools SNP 644588 644588 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.47%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C175:99 scaffold413 SAMTools SNP 650227 650227 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold413 SAMTools SNP 663362 663362 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 696277 696277 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C41:40 scaffold413 SAMTools SNP 696403 696403 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C5%2C29%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 697517 697517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 697589 697589 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold413 SAMTools SNP 698015 698015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C24%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 698089 698089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C5%3BMQ%3D50%3BFQ%3D-47%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold413 SAMTools SNP 698108 698108 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C16%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold413 SAMTools SNP 698138 698138 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C31%2C4%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-12%2C0.00048%2C1%2C2.4e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 698468 698468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 698546 698546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold413 SAMTools SNP 699550 699550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C6%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 699650 699650 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C45%2C0:87 scaffold413 SAMTools SNP 699709 699709 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold413 SAMTools SNP 702223 702223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D39%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold413 SAMTools SNP 702624 702624 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C9%2C0%3BMQ%3D45%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold413 SAMTools SNP 702684 702684 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C13%3BMQ%3D44%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold413 SAMTools SNP 702690 702690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C13%2C8%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 702711 702711 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C4%2C10%3BMQ%3D45%3BFQ%3D214%3BPV4%3D0.22%2C1%2C0.18%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold413 SAMTools SNP 703120 703120 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C19%2C20%3BMQ%3D45%3BFQ%3D146%3BPV4%3D0.00078%2C1%2C0.25%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold413 SAMTools SNP 703180 703180 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D31%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C78%2C0:99 scaffold413 SAMTools SNP 705078 705078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C18%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D2.2e-07%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold413 SAMTools SNP 714983 714983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold413 SAMTools SNP 723027 723027 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold413 SAMTools SNP 723485 723485 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold413 SAMTools SNP 724116 724116 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold413 SAMTools SNP 724125 724125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold413 SAMTools SNP 724905 724905 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold413 SAMTools SNP 731182 731182 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold413 SAMTools SNP 733096 733096 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.03%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C29:32 scaffold413 SAMTools SNP 733147 733147 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold413 SAMTools SNP 733163 733163 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold413 SAMTools SNP 733652 733652 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0089%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C134:37 scaffold413 SAMTools SNP 733657 733657 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0022%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C131:28 scaffold413 SAMTools SNP 733863 733863 68.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold413 SAMTools SNP 738023 738023 189 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C30%2C0:57 scaffold413 SAMTools SNP 747775 747775 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold413 SAMTools SNP 757509 757509 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold413 SAMTools SNP 757818 757818 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold413 SAMTools SNP 768905 768905 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold413 SAMTools SNP 770424 770424 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold413 SAMTools SNP 770520 770520 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D4%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C29:32 scaffold413 SAMTools SNP 770608 770608 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C22%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.014%2C4.6e-09%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold413 SAMTools SNP 770610 770610 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.16%2C0.00017%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold41304 SAMTools SNP 37075 37075 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 38932 38932 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold41304 SAMTools SNP 43624 43624 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 43893 43893 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41304 SAMTools SNP 56650 56650 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.46%2C0.00026%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C181:43 scaffold41304 SAMTools SNP 56859 56859 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C231:63 scaffold41304 SAMTools SNP 57460 57460 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C4%2C22%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.12%2C2.8e-08%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41304 SAMTools SNP 57468 57468 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C1%2C6%3BMQ%3D47%3BFQ%3D67%3BPV4%3D1%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold41304 SAMTools SNP 57497 57497 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C22%3BMQ%3D47%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold41304 SAMTools SNP 57502 57502 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C12%3BMQ%3D47%3BFQ%3D121%3BPV4%3D1%2C0.23%2C0.0084%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold41304 SAMTools SNP 57921 57921 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold41304 SAMTools SNP 57995 57995 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C146:62 scaffold41304 SAMTools SNP 58029 58029 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C0%3BMQ%3D40%3BFQ%3D34%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C230:64 scaffold41304 SAMTools SNP 58614 58614 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold41304 SAMTools SNP 59203 59203 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.19%3BPV4%3D1%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C38:37 scaffold41304 SAMTools SNP 60171 60171 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C54%2C0:96 scaffold41304 SAMTools SNP 68718 68718 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold41304 SAMTools SNP 69034 69034 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D47%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C132:99 scaffold41304 SAMTools SNP 69062 69062 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.55%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold41304 SAMTools SNP 69075 69075 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold41304 SAMTools SNP 69323 69323 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41304 SAMTools SNP 69629 69629 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41304 SAMTools SNP 69891 69891 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41304 SAMTools SNP 69913 69913 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold41304 SAMTools SNP 69930 69930 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C156:60 scaffold41304 SAMTools SNP 70476 70476 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold41304 SAMTools SNP 70638 70638 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold41304 SAMTools SNP 70698 70698 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41304 SAMTools SNP 70916 70916 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 70952 70952 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41304 SAMTools SNP 71609 71609 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C0.17%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C77:78 scaffold41304 SAMTools SNP 72326 72326 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold41304 SAMTools SNP 72439 72439 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 72449 72449 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C19%3BMQ%3D46%3BFQ%3D190%3BPV4%3D1%2C0.24%2C0.019%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold41304 SAMTools SNP 73086 73086 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold41304 SAMTools SNP 73214 73214 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D48%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C212:99 scaffold41304 SAMTools SNP 73262 73262 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C16%2C0%3BMQ%3D49%3BFQ%3D157%3BPV4%3D0.38%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C192:99 scaffold41304 SAMTools SNP 73315 73315 74.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1.2e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C13%2C0:23 scaffold41304 SAMTools SNP 73334 73334 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C18%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.39%2C7.3e-07%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C169:99 scaffold41304 SAMTools SNP 73732 73732 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41304 SAMTools SNP 73870 73870 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold41304 SAMTools SNP 73871 73871 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold41304 SAMTools SNP 76194 76194 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41304 SAMTools SNP 76235 76235 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 78913 78913 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D47%3BFQ%3D20.1%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41304 SAMTools SNP 79088 79088 35.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold41304 SAMTools SNP 79293 79293 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold41304 SAMTools SNP 79320 79320 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold41304 SAMTools SNP 79328 79328 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold41304 SAMTools SNP 79610 79610 40.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold41304 SAMTools SNP 79803 79803 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C82:85 scaffold41304 SAMTools SNP 80089 80089 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C26:29 scaffold41304 SAMTools SNP 80602 80602 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41304 SAMTools SNP 80679 80679 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41304 SAMTools SNP 81415 81415 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D48%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold41304 SAMTools SNP 81421 81421 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41304 SAMTools SNP 82690 82690 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41304 SAMTools SNP 82718 82718 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41304 SAMTools SNP 82731 82731 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41304 SAMTools SNP 83240 83240 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C0%3BMQ%3D48%3BFQ%3D118%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41304 SAMTools SNP 83248 83248 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41304 SAMTools SNP 83265 83265 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C204:99 scaffold41304 SAMTools SNP 83270 83270 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold41304 SAMTools SNP 83337 83337 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C15%3BMQ%3D44%3BFQ%3D69%3BPV4%3D0.092%2C2.9e-12%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C195:99 scaffold41304 SAMTools SNP 83793 83793 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D45%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold41304 SAMTools SNP 83832 83832 4.39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5553%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C7:13 scaffold41304 SAMTools SNP 84888 84888 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C6%3BMQ%3D49%3BFQ%3D52%3BPV4%3D1%2C7.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C226:82 scaffold41304 SAMTools SNP 85833 85833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 92556 92556 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41304 SAMTools SNP 92613 92613 52.8 . . REF=T;ALT=C,G,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C46%2C40%2C83%2C0%2C80%2C83%2C0%2C39%2C80:10 scaffold41304 SAMTools SNP 93574 93574 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C131:69 scaffold41304 SAMTools SNP 93768 93768 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C0.00039%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold41304 SAMTools SNP 94019 94019 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D33%3BFQ%3D7.8%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C85:34 scaffold41304 SAMTools SNP 94320 94320 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41304 SAMTools SNP 94342 94342 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold41304 SAMTools SNP 94788 94788 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41304 SAMTools SNP 95528 95528 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D44%3BFQ%3D4.77%3BPV4%3D1%2C1%2C0.29%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C221:28 scaffold41304 SAMTools SNP 95537 95537 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41304 SAMTools SNP 95551 95551 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41304 SAMTools SNP 95768 95768 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold41304 SAMTools SNP 96029 96029 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C118:30 scaffold41304 SAMTools SNP 104037 104037 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C133:36 scaffold41304 SAMTools SNP 104293 104293 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold41304 SAMTools SNP 105476 105476 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41304 SAMTools SNP 105508 105508 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41312 SAMTools SNP 8202 8202 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold41312 SAMTools SNP 8220 8220 78.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold41312 SAMTools SNP 8345 8345 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41312 SAMTools SNP 8586 8586 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold41312 SAMTools SNP 42258 42258 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41312 SAMTools SNP 43571 43571 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41312 SAMTools SNP 82547 82547 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold41312 SAMTools SNP 82608 82608 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41312 SAMTools SNP 82859 82859 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41312 SAMTools SNP 82899 82899 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41312 SAMTools SNP 82910 82910 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold41312 SAMTools SNP 88991 88991 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41312 SAMTools SNP 94134 94134 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41312 SAMTools SNP 95675 95675 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold41312 SAMTools SNP 95789 95789 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41312 SAMTools SNP 97038 97038 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41312 SAMTools SNP 97039 97039 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41312 SAMTools SNP 97063 97063 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41312 SAMTools SNP 97216 97216 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41312 SAMTools SNP 97544 97544 16.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold41312 SAMTools SNP 97774 97774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41312 SAMTools SNP 97813 97813 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41312 SAMTools SNP 98800 98800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41312 SAMTools SNP 103437 103437 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41312 SAMTools SNP 104483 104483 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41312 SAMTools SNP 105034 105034 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41312 SAMTools SNP 105041 105041 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41312 SAMTools SNP 106564 106564 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C54%2C0%2C15%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold41312 SAMTools SNP 106597 106597 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C51%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C166:99 scaffold41312 SAMTools SNP 106621 106621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41312 SAMTools SNP 106666 106666 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41312 SAMTools SNP 106687 106687 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41312 SAMTools SNP 107461 107461 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C39%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold41312 SAMTools SNP 107903 107903 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C58%2C0%2C8%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.27%2C1%2C8.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold41312 SAMTools SNP 107935 107935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C38%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41312 SAMTools SNP 107950 107950 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41312 SAMTools SNP 107977 107977 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.21%2C1%2C1%2C2.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold41312 SAMTools SNP 108255 108255 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C1%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 108264 108264 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C100:99 scaffold41312 SAMTools SNP 108297 108297 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C2%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-11%2C0.054%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 108303 108303 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D50%3BPV4%3D2.6e-16%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold41312 SAMTools SNP 108842 108842 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C15%2C71%3BMQ%3D50%3BFQ%3D-171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41312 SAMTools SNP 109396 109396 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.038%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41312 SAMTools SNP 109414 109414 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41312 SAMTools SNP 109444 109444 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C99%2C14%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.061%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold41312 SAMTools SNP 109465 109465 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C4%2C138%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 110219 110219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C51%2C96%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-12%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 110269 110269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C148%2C3%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0012%2C1%2C4.2e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 110846 110846 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41312 SAMTools SNP 111084 111084 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C116%2C0%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41312 SAMTools SNP 111108 111108 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C7%2C101%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.048%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold41312 SAMTools SNP 111113 111113 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C105%2C0%2C29%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.34%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold41312 SAMTools SNP 111145 111145 69.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold41312 SAMTools SNP 111787 111787 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41312 SAMTools SNP 111804 111804 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41312 SAMTools SNP 112537 112537 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold41316 SAMTools SNP 80 80 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41316 SAMTools SNP 585 585 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41316 SAMTools SNP 615 615 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C62:65 scaffold41316 SAMTools SNP 984 984 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C2%3BMQ%3D49%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold41316 SAMTools SNP 2446 2446 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.43%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold41316 SAMTools SNP 3712 3712 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold41316 SAMTools SNP 4033 4033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 4052 4052 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C33%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.11%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold41316 SAMTools SNP 4091 4091 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00017%2C5.6e-05%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41316 SAMTools SNP 4392 4392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 4466 4466 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41316 SAMTools SNP 5740 5740 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41316 SAMTools SNP 5967 5967 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.49%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41316 SAMTools SNP 9119 9119 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C129:99 scaffold41316 SAMTools SNP 10433 10433 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C1%2C11%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.26%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C242:99 scaffold41316 SAMTools SNP 10833 10833 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41316 SAMTools SNP 11324 11324 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C128:63 scaffold41316 SAMTools SNP 11569 11569 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0012%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C229:44 scaffold41316 SAMTools SNP 11572 11572 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0241%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41316 SAMTools SNP 11590 11590 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold41316 SAMTools SNP 11823 11823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold41316 SAMTools SNP 11841 11841 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 12046 12046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C24%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41316 SAMTools SNP 13944 13944 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41316 SAMTools SNP 13945 13945 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41316 SAMTools SNP 14153 14153 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C232:99 scaffold41316 SAMTools SNP 14186 14186 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.021%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41316 SAMTools SNP 14240 14240 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold41316 SAMTools SNP 14774 14774 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C8%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold41316 SAMTools SNP 14801 14801 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.55%2C0.055%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41316 SAMTools SNP 14804 14804 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.051%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold41316 SAMTools SNP 14984 14984 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 15275 15275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C26%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 15302 15302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C47%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold41316 SAMTools SNP 15466 15466 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C36%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 15532 15532 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C45%2C3%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.68%2C0.46%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41316 SAMTools SNP 15559 15559 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.071%2C0.048%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold41316 SAMTools SNP 15562 15562 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.071%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold41316 SAMTools SNP 16178 16178 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C10%2C10%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.021%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold41316 SAMTools SNP 16256 16256 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C83%2C2%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.083%2C1%2C1%2C7.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold41316 SAMTools SNP 16274 16274 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C83%2C4%2C9%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.0093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold41316 SAMTools SNP 18081 18081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41316 SAMTools SNP 18488 18488 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C21%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0049%2C4.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold41316 SAMTools SNP 19501 19501 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C24%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 19761 19761 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 19819 19819 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41316 SAMTools SNP 20333 20333 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 20513 20513 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 20582 20582 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold41316 SAMTools SNP 20621 20621 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 20627 20627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.19%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 21690 21690 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold41316 SAMTools SNP 22195 22195 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 22238 22238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C7%2C28%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 22486 22486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C26%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C1%2C0.08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 25061 25061 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D48%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C102%2C0:99 scaffold41316 SAMTools SNP 25913 25913 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C24%2C0:45 scaffold41316 SAMTools SNP 25924 25924 73.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D0.11%2C0.018%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C5%2C0:9 scaffold41316 SAMTools SNP 25951 25951 54.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D29%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C5%2C0:9 scaffold41316 SAMTools SNP 26627 26627 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C11%2C0%3BMQ%3D35%3BFQ%3D108%3BPV4%3D0.076%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41316 SAMTools SNP 26633 26633 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C26%2C7%3BMQ%3D28%3BFQ%3D108%3BPV4%3D0.034%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold41316 SAMTools SNP 37929 37929 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41316 SAMTools SNP 38052 38052 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.13%2C2.5e-14%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41316 SAMTools SNP 40204 40204 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold41316 SAMTools SNP 40454 40454 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold41316 SAMTools SNP 44569 44569 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41316 SAMTools SNP 44575 44575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41316 SAMTools SNP 45070 45070 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.097%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 45318 45318 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41316 SAMTools SNP 45339 45339 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C3%2C11%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.32%2C5.3e-06%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold41316 SAMTools SNP 45354 45354 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold41316 SAMTools SNP 45878 45878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C67%3BMQ%3D50%3BFQ%3D-268%3BPV4%3D1%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold41316 SAMTools SNP 46160 46160 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41316 SAMTools SNP 46166 46166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41316 SAMTools SNP 46739 46739 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41316 SAMTools SNP 46796 46796 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41316 SAMTools SNP 46967 46967 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41316 SAMTools SNP 47428 47428 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41316 SAMTools SNP 47452 47452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41316 SAMTools SNP 47488 47488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41316 SAMTools SNP 47684 47684 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41316 SAMTools SNP 47705 47705 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41316 SAMTools SNP 48202 48202 186 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold41316 SAMTools SNP 48232 48232 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41316 SAMTools SNP 48443 48443 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.00018%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41316 SAMTools SNP 48575 48575 74.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold41316 SAMTools SNP 49546 49546 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41316 SAMTools SNP 49992 49992 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold41316 SAMTools SNP 50851 50851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C19%3BMQ%3D49%3BFQ%3D-149%3BPV4%3D0.43%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold41316 SAMTools SNP 51019 51019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C12%2C22%3BMQ%3D45%3BFQ%3D-87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41316 SAMTools SNP 51079 51079 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C5%2C3%3BMQ%3D43%3BFQ%3D67%3BPV4%3D0.043%2C1%2C0.031%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C233:97 scaffold41316 SAMTools SNP 51726 51726 146 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C16%3BMQ%3D37%3BFQ%3D-53%3BPV4%3D1%2C0.29%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C76%2C167%2C0%2C194:49 scaffold41316 SAMTools SNP 51762 51762 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C4%3BMQ%3D37%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C164:99 scaffold41316 SAMTools SNP 51788 51788 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41316 SAMTools SNP 51804 51804 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C1%3BMQ%3D48%3BFQ%3D10.4%3BPV4%3D1%2C0.17%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold41316 SAMTools SNP 51807 51807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C4%3BMQ%3D48%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold41316 SAMTools SNP 52988 52988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C23%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41316 SAMTools SNP 53235 53235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C58%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold41316 SAMTools SNP 53301 53301 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 53755 53755 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold41316 SAMTools SNP 53863 53863 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.082%2C0.12%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold41316 SAMTools SNP 54157 54157 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 54740 54740 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C23%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41316 SAMTools SNP 54815 54815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold41316 SAMTools SNP 54844 54844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C55%3BMQ%3D50%3BFQ%3D-171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41316 SAMTools SNP 55427 55427 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold41316 SAMTools SNP 55517 55517 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41316 SAMTools SNP 55520 55520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41316 SAMTools SNP 56001 56001 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C64%3BMQ%3D50%3BFQ%3D-209%3BPV4%3D1%2C0.3%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold41316 SAMTools SNP 56029 56029 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-05%2C0.00016%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41316 SAMTools SNP 56115 56115 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.017%2C7.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C248:53 scaffold41316 SAMTools SNP 56450 56450 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold41316 SAMTools SNP 56656 56656 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C238:51 scaffold41318 SAMTools SNP 5072 5072 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41344 SAMTools SNP 8001 8001 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41344 SAMTools SNP 81004 81004 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41344 SAMTools SNP 81621 81621 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41344 SAMTools SNP 82956 82956 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41344 SAMTools SNP 82974 82974 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41344 SAMTools SNP 107818 107818 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41344 SAMTools SNP 111221 111221 28.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold41346 SAMTools SNP 6336 6336 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41346 SAMTools SNP 6356 6356 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41346 SAMTools SNP 6419 6419 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41346 SAMTools SNP 15736 15736 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41346 SAMTools SNP 15765 15765 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold41346 SAMTools SNP 16298 16298 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41346 SAMTools SNP 16337 16337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41346 SAMTools SNP 16595 16595 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41346 SAMTools SNP 16601 16601 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41346 SAMTools SNP 16837 16837 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41346 SAMTools SNP 16869 16869 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41346 SAMTools SNP 16891 16891 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold41346 SAMTools SNP 39493 39493 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41346 SAMTools SNP 39522 39522 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41346 SAMTools SNP 59499 59499 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold41346 SAMTools SNP 87510 87510 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41346 SAMTools SNP 92822 92822 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41346 SAMTools SNP 93104 93104 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41346 SAMTools SNP 93428 93428 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41346 SAMTools SNP 93443 93443 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41346 SAMTools SNP 94289 94289 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C242:99 scaffold41346 SAMTools SNP 94310 94310 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C204:71 scaffold41346 SAMTools SNP 94738 94738 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41346 SAMTools SNP 96819 96819 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold41346 SAMTools SNP 97220 97220 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold41346 SAMTools SNP 97229 97229 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.061%2C0.1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold41346 SAMTools SNP 97275 97275 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.032%2C0.12%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C171:99 scaffold41346 SAMTools SNP 97778 97778 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold41346 SAMTools SNP 97945 97945 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.32%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold41346 SAMTools SNP 98909 98909 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41346 SAMTools SNP 103750 103750 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold41346 SAMTools SNP 103781 103781 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41346 SAMTools SNP 103847 103847 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41346 SAMTools SNP 106034 106034 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold41356 SAMTools SNP 19498 19498 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41356 SAMTools SNP 19501 19501 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41356 SAMTools SNP 33878 33878 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41356 SAMTools SNP 34682 34682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41356 SAMTools SNP 86384 86384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41356 SAMTools SNP 103763 103763 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41356 SAMTools SNP 104638 104638 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41356 SAMTools SNP 114862 114862 33.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C13:16 scaffold41356 SAMTools SNP 114964 114964 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 740 740 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold41358 SAMTools SNP 25978 25978 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C5%2C9%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.41%2C2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold41358 SAMTools SNP 26229 26229 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C18%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C2.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C251:99 scaffold41358 SAMTools SNP 26247 26247 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C232:99 scaffold41358 SAMTools SNP 27999 27999 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold41358 SAMTools SNP 34073 34073 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 39303 39303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41358 SAMTools SNP 39831 39831 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C21%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold41358 SAMTools SNP 39870 39870 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41358 SAMTools SNP 40092 40092 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C2%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.17%2C0.021%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold41358 SAMTools SNP 40112 40112 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C28%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C232:99 scaffold41358 SAMTools SNP 40172 40172 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C242:99 scaffold41358 SAMTools SNP 40377 40377 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 40617 40617 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold41358 SAMTools SNP 41000 41000 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold41358 SAMTools SNP 41015 41015 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.37%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C228:99 scaffold41358 SAMTools SNP 41033 41033 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold41358 SAMTools SNP 41045 41045 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41358 SAMTools SNP 41051 41051 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41358 SAMTools SNP 41474 41474 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 41482 41482 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 47701 47701 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41358 SAMTools SNP 48098 48098 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C39%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 48218 48218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C2%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 48542 48542 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold41358 SAMTools SNP 48548 48548 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 48563 48563 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold41358 SAMTools SNP 49694 49694 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C4%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.73%2C0.0049%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold41358 SAMTools SNP 51193 51193 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold41358 SAMTools SNP 52196 52196 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C23%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.49%2C4.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold41358 SAMTools SNP 54892 54892 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 55422 55422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C33%3BMQ%3D50%3BFQ%3D-179%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C0:99 scaffold41358 SAMTools SNP 55757 55757 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C24%2C8%2C9%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold41358 SAMTools SNP 56454 56454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41358 SAMTools SNP 56471 56471 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 56529 56529 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41358 SAMTools SNP 57986 57986 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C16%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.28%2C0.001%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41358 SAMTools SNP 60247 60247 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C188%2C15%2C181%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 60298 60298 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C184%2C14%2C181%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 60330 60330 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C38%2C0%2C17%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.00087%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold41358 SAMTools SNP 60605 60605 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41358 SAMTools SNP 60877 60877 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.23%2C0.053%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold41358 SAMTools SNP 60898 60898 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C13%2C20%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold41358 SAMTools SNP 60910 60910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C0.24%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 60916 60916 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C23%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 60933 60933 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C34%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 61411 61411 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C18%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 61414 61414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 61981 61981 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41358 SAMTools SNP 62042 62042 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C50%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 62305 62305 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C38%2C53%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 62368 62368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41358 SAMTools SNP 64763 64763 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C28%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold41358 SAMTools SNP 65297 65297 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41358 SAMTools SNP 65508 65508 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold41358 SAMTools SNP 65559 65559 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold41358 SAMTools SNP 65958 65958 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 66491 66491 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C1%2C14%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold41358 SAMTools SNP 66515 66515 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C1%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold41358 SAMTools SNP 66584 66584 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C5%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0045%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41358 SAMTools SNP 66602 66602 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold41358 SAMTools SNP 66608 66608 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C142:99 scaffold41358 SAMTools SNP 66931 66931 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.069%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold41358 SAMTools SNP 67142 67142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41358 SAMTools SNP 67166 67166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41358 SAMTools SNP 67423 67423 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold41358 SAMTools SNP 67558 67558 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 67780 67780 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41358 SAMTools SNP 67828 67828 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41358 SAMTools SNP 68470 68470 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41358 SAMTools SNP 68536 68536 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41358 SAMTools SNP 69633 69633 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C33%2C0:51 scaffold41358 SAMTools SNP 69860 69860 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold41358 SAMTools SNP 71021 71021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41358 SAMTools SNP 71045 71045 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41358 SAMTools SNP 71129 71129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold41358 SAMTools SNP 71422 71422 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 71728 71728 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C14%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C76:79 scaffold41358 SAMTools SNP 71781 71781 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41358 SAMTools SNP 72074 72074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C64%2C14%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.35%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold41358 SAMTools SNP 72684 72684 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold41358 SAMTools SNP 72720 72720 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41358 SAMTools SNP 73429 73429 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41358 SAMTools SNP 73527 73527 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C12%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold41358 SAMTools SNP 73976 73976 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41358 SAMTools SNP 74181 74181 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 74734 74734 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41358 SAMTools SNP 74750 74750 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C75%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold41358 SAMTools SNP 74806 74806 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C25%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold41358 SAMTools SNP 74993 74993 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C19%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold41358 SAMTools SNP 75556 75556 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C15%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41358 SAMTools SNP 75565 75565 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41358 SAMTools SNP 75628 75628 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C25%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold41358 SAMTools SNP 76275 76275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold41358 SAMTools SNP 77103 77103 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41358 SAMTools SNP 77145 77145 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold41358 SAMTools SNP 77746 77746 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41358 SAMTools SNP 79889 79889 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C112:77 scaffold41358 SAMTools SNP 79898 79898 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C18%2C0:33 scaffold41358 SAMTools SNP 80349 80349 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41358 SAMTools SNP 80394 80394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C27%3BMQ%3D49%3BFQ%3D38%3BPV4%3D0.0053%2C0.081%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold41358 SAMTools SNP 80409 80409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C30%3BMQ%3D49%3BFQ%3D54%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold41358 SAMTools SNP 80429 80429 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C5%2C1%3BMQ%3D49%3BFQ%3D52%3BPV4%3D0.00092%2C0.44%2C0.0069%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41358 SAMTools SNP 81687 81687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41358 SAMTools SNP 81727 81727 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C245:99 scaffold41358 SAMTools SNP 81741 81741 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 82454 82454 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.64%2C0.0032%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold41358 SAMTools SNP 82967 82967 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 83003 83003 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 83127 83127 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 83190 83190 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41358 SAMTools SNP 83332 83332 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C245:99 scaffold41358 SAMTools SNP 84762 84762 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41358 SAMTools SNP 84771 84771 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 84831 84831 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C47%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41358 SAMTools SNP 85135 85135 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C47%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41358 SAMTools SNP 85231 85231 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41358 SAMTools SNP 85243 85243 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41358 SAMTools SNP 85534 85534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41358 SAMTools SNP 85573 85573 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41358 SAMTools SNP 86000 86000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41358 SAMTools SNP 86034 86034 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.59%2C0.47%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41358 SAMTools SNP 86211 86211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41358 SAMTools SNP 86619 86619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41358 SAMTools SNP 86643 86643 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41358 SAMTools SNP 86666 86666 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41358 SAMTools SNP 86668 86668 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.49%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41358 SAMTools SNP 91871 91871 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C1%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold41358 SAMTools SNP 91934 91934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.075%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 93842 93842 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41358 SAMTools SNP 94486 94486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C23%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41358 SAMTools SNP 95191 95191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C29%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.15%2C0.22%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41358 SAMTools SNP 104391 104391 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41358 SAMTools SNP 104509 104509 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold41358 SAMTools SNP 105397 105397 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold41372 SAMTools SNP 55060 55060 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold41372 SAMTools SNP 56149 56149 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41380 SAMTools SNP 16176 16176 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 16233 16233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 16241 16241 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 16770 16770 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41380 SAMTools SNP 31793 31793 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41380 SAMTools SNP 31814 31814 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41380 SAMTools SNP 37958 37958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41380 SAMTools SNP 39615 39615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41380 SAMTools SNP 40958 40958 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C21%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41380 SAMTools SNP 41196 41196 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold41380 SAMTools SNP 41201 41201 175 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C228:99 scaffold41380 SAMTools SNP 41709 41709 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold41380 SAMTools SNP 41752 41752 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.38%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold41380 SAMTools SNP 41775 41775 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 42977 42977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 45340 45340 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold41380 SAMTools SNP 45630 45630 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41380 SAMTools SNP 47711 47711 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41380 SAMTools SNP 48391 48391 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41380 SAMTools SNP 49176 49176 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C7%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold41380 SAMTools SNP 50318 50318 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41380 SAMTools SNP 56341 56341 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.28%2C0.2%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold41380 SAMTools SNP 56342 56342 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41380 SAMTools SNP 64145 64145 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold41380 SAMTools SNP 65166 65166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 69082 69082 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41380 SAMTools SNP 69103 69103 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold41380 SAMTools SNP 71216 71216 48.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold41380 SAMTools SNP 71282 71282 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41380 SAMTools SNP 72526 72526 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C216:99 scaffold41380 SAMTools SNP 72562 72562 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1.1e-05%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold41380 SAMTools SNP 77123 77123 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41380 SAMTools SNP 78150 78150 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.17%2C0.3%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C136:99 scaffold41380 SAMTools SNP 78153 78153 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.17%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold41380 SAMTools SNP 81533 81533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.41%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold41380 SAMTools SNP 82634 82634 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41380 SAMTools SNP 82649 82649 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold41380 SAMTools SNP 82670 82670 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.14%2C0.16%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C136:94 scaffold41380 SAMTools SNP 83637 83637 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C195:99 scaffold41380 SAMTools SNP 83640 83640 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C197:99 scaffold41380 SAMTools SNP 85055 85055 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41380 SAMTools SNP 85129 85129 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41380 SAMTools SNP 85139 85139 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.33%2C0.2%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold41380 SAMTools SNP 86201 86201 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.044%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41380 SAMTools SNP 86234 86234 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold41380 SAMTools SNP 87590 87590 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold41380 SAMTools SNP 87606 87606 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.067%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold41380 SAMTools SNP 90225 90225 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 90273 90273 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41380 SAMTools SNP 90413 90413 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41380 SAMTools SNP 91050 91050 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold41380 SAMTools SNP 92454 92454 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41380 SAMTools SNP 92540 92540 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold41380 SAMTools SNP 94276 94276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41380 SAMTools SNP 94288 94288 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C251:99 scaffold41380 SAMTools SNP 94302 94302 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41380 SAMTools SNP 96475 96475 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.095%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41380 SAMTools SNP 96479 96479 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41380 SAMTools SNP 98472 98472 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.55%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41380 SAMTools SNP 100364 100364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41380 SAMTools SNP 100420 100420 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold41380 SAMTools SNP 102019 102019 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.19%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold41380 SAMTools SNP 102391 102391 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41380 SAMTools SNP 103354 103354 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 103357 103357 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 103573 103573 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold41380 SAMTools SNP 103589 103589 31.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold41380 SAMTools SNP 103872 103872 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41380 SAMTools SNP 106619 106619 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C24%2C0:45 scaffold41380 SAMTools SNP 110316 110316 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold41380 SAMTools SNP 112524 112524 35.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold41388 SAMTools SNP 1023 1023 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41388 SAMTools SNP 1024 1024 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41388 SAMTools SNP 1078 1078 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41388 SAMTools SNP 10585 10585 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41388 SAMTools SNP 10628 10628 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.29%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold41388 SAMTools SNP 11060 11060 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41388 SAMTools SNP 11067 11067 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41388 SAMTools SNP 17379 17379 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold41388 SAMTools SNP 35020 35020 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C45%2C0:78 scaffold41388 SAMTools SNP 58595 58595 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold41390 SAMTools SNP 7883 7883 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41390 SAMTools SNP 7940 7940 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.012%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41390 SAMTools SNP 16423 16423 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41390 SAMTools SNP 20771 20771 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41390 SAMTools SNP 22502 22502 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41390 SAMTools SNP 29776 29776 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C34%2C42%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41390 SAMTools SNP 30732 30732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C118%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41390 SAMTools SNP 33713 33713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C147%2C82%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41390 SAMTools SNP 35615 35615 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C42%2C19%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41390 SAMTools SNP 36347 36347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C77%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41390 SAMTools SNP 36395 36395 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.39%2C0.0044%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold41390 SAMTools SNP 36503 36503 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold41390 SAMTools SNP 37318 37318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41390 SAMTools SNP 37333 37333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold41390 SAMTools SNP 37936 37936 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C117%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41390 SAMTools SNP 37948 37948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41390 SAMTools SNP 38029 38029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C7%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold41390 SAMTools SNP 40481 40481 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C64%3BMQ%3D50%3BFQ%3D-223%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41390 SAMTools SNP 42858 42858 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C3%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41390 SAMTools SNP 42911 42911 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41390 SAMTools SNP 42921 42921 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41390 SAMTools SNP 43483 43483 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41390 SAMTools SNP 43644 43644 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41390 SAMTools SNP 43696 43696 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41390 SAMTools SNP 43699 43699 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41390 SAMTools SNP 43702 43702 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold41390 SAMTools SNP 49554 49554 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41390 SAMTools SNP 50230 50230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold41390 SAMTools SNP 50244 50244 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41390 SAMTools SNP 50316 50316 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C26:29 scaffold41390 SAMTools SNP 103394 103394 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41390 SAMTools SNP 103551 103551 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C12%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold41400 SAMTools SNP 38568 38568 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 38613 38613 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 38691 38691 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 49038 49038 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 56730 56730 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold41400 SAMTools SNP 56766 56766 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41400 SAMTools SNP 57880 57880 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold41400 SAMTools SNP 57904 57904 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold41400 SAMTools SNP 59127 59127 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.17%2C0.037%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C156:99 scaffold41400 SAMTools SNP 60335 60335 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41400 SAMTools SNP 60392 60392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41400 SAMTools SNP 61736 61736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41400 SAMTools SNP 64849 64849 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C184:72 scaffold41400 SAMTools SNP 66256 66256 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41400 SAMTools SNP 66321 66321 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0099%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C210:59 scaffold41400 SAMTools SNP 66351 66351 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.048%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C204:99 scaffold41400 SAMTools SNP 67944 67944 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41400 SAMTools SNP 68039 68039 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0091%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold41400 SAMTools SNP 75672 75672 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41400 SAMTools SNP 75676 75676 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41400 SAMTools SNP 75781 75781 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.56%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C140:84 scaffold41400 SAMTools SNP 75850 75850 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold41400 SAMTools SNP 76107 76107 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41400 SAMTools SNP 76128 76128 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold41400 SAMTools SNP 81871 81871 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.5%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold41400 SAMTools SNP 83336 83336 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold41400 SAMTools SNP 83963 83963 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold41400 SAMTools SNP 84263 84263 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 84368 84368 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C3%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.06%2C0.0064%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold41400 SAMTools SNP 84389 84389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41400 SAMTools SNP 89063 89063 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41400 SAMTools SNP 102456 102456 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.31%2C9.4e-14%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C245:79 scaffold41400 SAMTools SNP 104173 104173 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41400 SAMTools SNP 104209 104209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41400 SAMTools SNP 104837 104837 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41400 SAMTools SNP 110570 110570 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41400 SAMTools SNP 110588 110588 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41416 SAMTools SNP 51771 51771 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.43%2C0.048%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C198:60 scaffold41416 SAMTools SNP 56120 56120 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold41416 SAMTools SNP 60775 60775 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold41416 SAMTools SNP 63801 63801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 65535 65535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C39%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 65597 65597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C63%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold41416 SAMTools SNP 65825 65825 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C12%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 67561 67561 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C87%2C20%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 67979 67979 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C20%2C32%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 68057 68057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C21%2C72%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 68796 68796 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold41416 SAMTools SNP 68832 68832 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C23%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold41416 SAMTools SNP 69122 69122 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C55%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold41416 SAMTools SNP 69140 69140 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41416 SAMTools SNP 69941 69941 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C125%2C19%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41416 SAMTools SNP 69947 69947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C100%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41416 SAMTools SNP 70043 70043 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41416 SAMTools SNP 70316 70316 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41416 SAMTools SNP 70388 70388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C1%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 70598 70598 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C73:76 scaffold41416 SAMTools SNP 70600 70600 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41416 SAMTools SNP 70675 70675 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0083%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C189:40 scaffold41416 SAMTools SNP 70943 70943 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C86%2C11%2C74%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0023%2C3.4e-125%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41416 SAMTools SNP 77831 77831 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41416 SAMTools SNP 80313 80313 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41416 SAMTools SNP 80713 80713 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold41416 SAMTools SNP 81061 81061 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41416 SAMTools SNP 81426 81426 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 81444 81444 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 81519 81519 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41416 SAMTools SNP 81545 81545 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41416 SAMTools SNP 82775 82775 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold41416 SAMTools SNP 83932 83932 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold41416 SAMTools SNP 83966 83966 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41416 SAMTools SNP 85373 85373 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 88170 88170 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41416 SAMTools SNP 88232 88232 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41416 SAMTools SNP 88418 88418 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41416 SAMTools SNP 88427 88427 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41416 SAMTools SNP 88453 88453 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.46%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold41416 SAMTools SNP 88808 88808 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold41416 SAMTools SNP 89763 89763 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41416 SAMTools SNP 89796 89796 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41416 SAMTools SNP 92671 92671 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C28%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.28%2C0.0029%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold41416 SAMTools SNP 92699 92699 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold41416 SAMTools SNP 93079 93079 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold41416 SAMTools SNP 94509 94509 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 96499 96499 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C9%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C231:99 scaffold41416 SAMTools SNP 102921 102921 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41416 SAMTools SNP 104905 104905 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 105335 105335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41416 SAMTools SNP 105849 105849 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C129:99 scaffold41416 SAMTools SNP 105863 105863 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold41416 SAMTools SNP 105884 105884 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C130:60 scaffold41416 SAMTools SNP 106333 106333 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold41416 SAMTools SNP 106509 106509 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.0034%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41416 SAMTools SNP 107123 107123 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 107155 107155 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 107435 107435 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C36%2C0:69 scaffold41416 SAMTools SNP 109587 109587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C52%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold41416 SAMTools SNP 109625 109625 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41416 SAMTools SNP 109779 109779 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C151:60 scaffold41416 SAMTools SNP 109790 109790 51.8 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C42%2C36%2C86%2C0%2C77:10 scaffold41416 SAMTools SNP 109835 109835 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold41436 SAMTools SNP 218 218 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41436 SAMTools SNP 221 221 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41436 SAMTools SNP 1711 1711 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41436 SAMTools SNP 1722 1722 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41436 SAMTools SNP 2964 2964 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold41436 SAMTools SNP 2976 2976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C76%2C1%3BMQ%3D50%3BFQ%3D-212%3BPV4%3D0.026%2C0.38%2C1%2C1.3e-17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C0:99 scaffold41436 SAMTools SNP 9169 9169 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41436 SAMTools SNP 21220 21220 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C48%2C0:93 scaffold41436 SAMTools SNP 21462 21462 76.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold41436 SAMTools SNP 22006 22006 34.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold41436 SAMTools SNP 22882 22882 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C206:65 scaffold41436 SAMTools SNP 24067 24067 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold41436 SAMTools SNP 24304 24304 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41436 SAMTools SNP 24646 24646 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41436 SAMTools SNP 24654 24654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C212:99 scaffold41436 SAMTools SNP 24973 24973 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C239:99 scaffold41436 SAMTools SNP 40262 40262 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41436 SAMTools SNP 41492 41492 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0128%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41436 SAMTools SNP 41812 41812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold41436 SAMTools SNP 41843 41843 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.001%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41436 SAMTools SNP 42166 42166 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold41436 SAMTools SNP 42180 42180 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41436 SAMTools SNP 42219 42219 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41436 SAMTools SNP 42473 42473 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41436 SAMTools SNP 42482 42482 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41436 SAMTools SNP 45514 45514 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41436 SAMTools SNP 45516 45516 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41436 SAMTools SNP 60864 60864 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41436 SAMTools SNP 62217 62217 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41436 SAMTools SNP 62292 62292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41436 SAMTools SNP 80299 80299 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41436 SAMTools SNP 80342 80342 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41436 SAMTools SNP 81637 81637 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold41436 SAMTools SNP 81667 81667 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41436 SAMTools SNP 81693 81693 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41442 SAMTools SNP 395 395 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41442 SAMTools SNP 521 521 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41442 SAMTools SNP 3994 3994 178 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C14:17 scaffold41442 SAMTools SNP 4049 4049 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold41442 SAMTools SNP 5409 5409 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41442 SAMTools SNP 48519 48519 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold41448 SAMTools SNP 826 826 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41448 SAMTools SNP 1627 1627 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41448 SAMTools SNP 4353 4353 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold41448 SAMTools SNP 9487 9487 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41448 SAMTools SNP 9488 9488 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41448 SAMTools SNP 10016 10016 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold41448 SAMTools SNP 25631 25631 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41448 SAMTools SNP 29635 29635 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D3.93%3BPV4%3D1%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C29:32 scaffold41448 SAMTools SNP 36896 36896 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C2.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C224:75 scaffold41448 SAMTools SNP 36935 36935 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.23%2C0.21%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold41448 SAMTools SNP 43421 43421 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41448 SAMTools SNP 43682 43682 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41448 SAMTools SNP 50104 50104 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold41448 SAMTools SNP 62366 62366 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41448 SAMTools SNP 62438 62438 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold41448 SAMTools SNP 70209 70209 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41448 SAMTools SNP 79738 79738 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41448 SAMTools SNP 89743 89743 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41448 SAMTools SNP 96545 96545 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C192:74 scaffold41448 SAMTools SNP 96909 96909 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C218:92 scaffold41448 SAMTools SNP 103300 103300 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41448 SAMTools SNP 103816 103816 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.36%2C2.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41448 SAMTools SNP 104083 104083 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold41452 SAMTools SNP 1470 1470 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41452 SAMTools SNP 9004 9004 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C29:32 scaffold41452 SAMTools SNP 9491 9491 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41452 SAMTools SNP 10661 10661 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41452 SAMTools SNP 11289 11289 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41452 SAMTools SNP 11302 11302 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41452 SAMTools SNP 22534 22534 43.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold41452 SAMTools SNP 24005 24005 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41452 SAMTools SNP 24019 24019 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.067%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C65:68 scaffold41452 SAMTools SNP 24895 24895 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41452 SAMTools SNP 25732 25732 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41452 SAMTools SNP 25884 25884 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41452 SAMTools SNP 26670 26670 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41452 SAMTools SNP 34246 34246 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.32%2C0.016%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold41452 SAMTools SNP 34312 34312 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.46%2C8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold41452 SAMTools SNP 34731 34731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41452 SAMTools SNP 34779 34779 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold41452 SAMTools SNP 34906 34906 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold41452 SAMTools SNP 34935 34935 187 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold41452 SAMTools SNP 49219 49219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41452 SAMTools SNP 49354 49354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41452 SAMTools SNP 56482 56482 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6.6e-20%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C245:51 scaffold41452 SAMTools SNP 76138 76138 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41452 SAMTools SNP 76769 76769 28.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold41466 SAMTools SNP 60386 60386 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold41466 SAMTools SNP 103245 103245 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41470 SAMTools SNP 3067 3067 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41470 SAMTools SNP 102063 102063 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41470 SAMTools SNP 117541 117541 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41472 SAMTools SNP 2276 2276 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41472 SAMTools SNP 2886 2886 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41472 SAMTools SNP 3494 3494 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold41472 SAMTools SNP 9606 9606 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold41472 SAMTools SNP 44919 44919 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41472 SAMTools SNP 61808 61808 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41472 SAMTools SNP 69754 69754 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41472 SAMTools SNP 69985 69985 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1.8e-33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41472 SAMTools SNP 70042 70042 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41472 SAMTools SNP 70073 70073 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C81%2C0:99 scaffold41472 SAMTools SNP 70170 70170 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5e-09%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold41472 SAMTools SNP 74973 74973 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold41472 SAMTools SNP 92083 92083 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.46%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C184:99 scaffold41472 SAMTools SNP 92502 92502 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41472 SAMTools SNP 92965 92965 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.0079%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold41472 SAMTools SNP 96693 96693 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41472 SAMTools SNP 96777 96777 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41472 SAMTools SNP 96897 96897 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1e-14%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C214:46 scaffold41472 SAMTools SNP 97344 97344 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold41472 SAMTools SNP 97928 97928 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.47%2C0.00081%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C166:28 scaffold41472 SAMTools SNP 98100 98100 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41472 SAMTools SNP 100919 100919 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.55%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41472 SAMTools SNP 101273 101273 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41472 SAMTools SNP 101654 101654 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41472 SAMTools SNP 102696 102696 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.47%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold41472 SAMTools SNP 102738 102738 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C187:99 scaffold41472 SAMTools SNP 102777 102777 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41472 SAMTools SNP 103231 103231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41472 SAMTools SNP 103629 103629 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold41472 SAMTools SNP 103662 103662 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold41472 SAMTools SNP 103892 103892 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41480 SAMTools SNP 11538 11538 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41480 SAMTools SNP 11573 11573 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 12555 12555 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41480 SAMTools SNP 12621 12621 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 13190 13190 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0079%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C232:34 scaffold41480 SAMTools SNP 13843 13843 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C240:99 scaffold41480 SAMTools SNP 13867 13867 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41480 SAMTools SNP 14374 14374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41480 SAMTools SNP 14387 14387 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold41480 SAMTools SNP 15240 15240 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41480 SAMTools SNP 15246 15246 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41480 SAMTools SNP 15769 15769 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41480 SAMTools SNP 15810 15810 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold41480 SAMTools SNP 15861 15861 153 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C69%2C236%2C0%2C230:33 scaffold41480 SAMTools SNP 16922 16922 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41480 SAMTools SNP 18001 18001 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 19495 19495 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold41480 SAMTools SNP 19546 19546 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold41480 SAMTools SNP 19564 19564 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41480 SAMTools SNP 20453 20453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41480 SAMTools SNP 20475 20475 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41480 SAMTools SNP 20483 20483 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 21132 21132 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 21138 21138 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41480 SAMTools SNP 21189 21189 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D48%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C224:99 scaffold41480 SAMTools SNP 21835 21835 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41480 SAMTools SNP 23899 23899 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41480 SAMTools SNP 24118 24118 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41480 SAMTools SNP 25255 25255 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41480 SAMTools SNP 30611 30611 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D78.8%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C107:99 scaffold41480 SAMTools SNP 30725 30725 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold41480 SAMTools SNP 30769 30769 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.002%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41480 SAMTools SNP 31335 31335 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41480 SAMTools SNP 31353 31353 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41480 SAMTools SNP 31392 31392 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 32216 32216 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41480 SAMTools SNP 32228 32228 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41480 SAMTools SNP 32267 32267 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41480 SAMTools SNP 32614 32614 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 32652 32652 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41480 SAMTools SNP 34090 34090 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold41480 SAMTools SNP 34799 34799 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41480 SAMTools SNP 35419 35419 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.35%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41480 SAMTools SNP 35425 35425 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.35%2C0.0075%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold41480 SAMTools SNP 35946 35946 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold41480 SAMTools SNP 36920 36920 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41480 SAMTools SNP 36921 36921 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41480 SAMTools SNP 50689 50689 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.032%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41480 SAMTools SNP 55757 55757 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 58418 58418 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41480 SAMTools SNP 60502 60502 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.098%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41480 SAMTools SNP 60504 60504 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41480 SAMTools SNP 60571 60571 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.085%2C6.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41480 SAMTools SNP 62005 62005 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41480 SAMTools SNP 63582 63582 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold41480 SAMTools SNP 64423 64423 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41480 SAMTools SNP 64425 64425 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 67964 67964 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41480 SAMTools SNP 68476 68476 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41480 SAMTools SNP 68542 68542 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 68611 68611 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C0.2%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold41480 SAMTools SNP 69257 69257 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold41480 SAMTools SNP 69314 69314 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold41480 SAMTools SNP 69326 69326 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.15%2C0.14%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold41480 SAMTools SNP 69342 69342 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0015%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41480 SAMTools SNP 69980 69980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold41480 SAMTools SNP 70166 70166 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41480 SAMTools SNP 70214 70214 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C77:80 scaffold41480 SAMTools SNP 70232 70232 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold41480 SAMTools SNP 70292 70292 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold41480 SAMTools SNP 71938 71938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41480 SAMTools SNP 71944 71944 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41480 SAMTools SNP 72689 72689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41480 SAMTools SNP 72704 72704 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41480 SAMTools SNP 72746 72746 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 72758 72758 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 73147 73147 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41480 SAMTools SNP 73153 73153 49.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold41480 SAMTools SNP 73174 73174 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 73659 73659 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 73712 73712 42.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold41480 SAMTools SNP 73966 73966 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C51%2C0:99 scaffold41480 SAMTools SNP 80631 80631 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 80638 80638 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41480 SAMTools SNP 82424 82424 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41480 SAMTools SNP 83472 83472 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41480 SAMTools SNP 83511 83511 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41480 SAMTools SNP 88330 88330 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold41480 SAMTools SNP 88636 88636 18 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold41480 SAMTools SNP 88656 88656 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold41480 SAMTools SNP 88701 88701 27.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold41480 SAMTools SNP 90418 90418 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41480 SAMTools SNP 91285 91285 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C252:99 scaffold41480 SAMTools SNP 100450 100450 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D6.66%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C43:33 scaffold41480 SAMTools SNP 108836 108836 38.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold415 SAMTools SNP 28725 28725 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41502 SAMTools SNP 1329 1329 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 1457 1457 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 4821 4821 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.092%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold41502 SAMTools SNP 4824 4824 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C28%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold41502 SAMTools SNP 5728 5728 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41502 SAMTools SNP 5928 5928 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41502 SAMTools SNP 6407 6407 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41502 SAMTools SNP 6530 6530 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C39%2C33%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 6532 6532 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C31%2C24%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 7856 7856 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold41502 SAMTools SNP 7862 7862 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 8445 8445 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C18%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 8700 8700 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C60%2C1%2C16%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.22%2C1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C228:28 scaffold41502 SAMTools SNP 8892 8892 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold41502 SAMTools SNP 9271 9271 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D231%2C53%2C227%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 9490 9490 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C315%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41502 SAMTools SNP 9677 9677 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold41502 SAMTools SNP 9962 9962 82.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C18%2C0:33 scaffold41502 SAMTools SNP 10103 10103 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C58%2C22%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 11346 11346 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41502 SAMTools SNP 11935 11935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41502 SAMTools SNP 11947 11947 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D696%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41502 SAMTools SNP 13326 13326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41502 SAMTools SNP 13327 13327 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41502 SAMTools SNP 13437 13437 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D17%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C78%2C0:99 scaffold41502 SAMTools SNP 15248 15248 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C44%2C43%2C35%3BMQ%3D45%3BFQ%3D73%3BPV4%3D1.1e-08%2C3.9e-06%2C0.00074%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold41502 SAMTools SNP 23761 23761 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold41502 SAMTools SNP 23832 23832 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41502 SAMTools SNP 29730 29730 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41502 SAMTools SNP 29930 29930 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41502 SAMTools SNP 36713 36713 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold41502 SAMTools SNP 36720 36720 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41502 SAMTools SNP 36722 36722 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41502 SAMTools SNP 39992 39992 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41502 SAMTools SNP 40916 40916 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41502 SAMTools SNP 43665 43665 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 43899 43899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 45088 45088 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41502 SAMTools SNP 45306 45306 138 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold41502 SAMTools SNP 45327 45327 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41502 SAMTools SNP 45976 45976 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41502 SAMTools SNP 45997 45997 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41502 SAMTools SNP 46321 46321 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41502 SAMTools SNP 46736 46736 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 47286 47286 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41502 SAMTools SNP 47390 47390 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.35%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C63:66 scaffold41502 SAMTools SNP 47744 47744 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41502 SAMTools SNP 47961 47961 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41502 SAMTools SNP 47982 47982 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 47983 47983 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41502 SAMTools SNP 49009 49009 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C15%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C76:79 scaffold41502 SAMTools SNP 49024 49024 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41502 SAMTools SNP 49073 49073 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold41502 SAMTools SNP 55201 55201 81.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold41502 SAMTools SNP 56793 56793 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold41502 SAMTools SNP 67545 67545 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41502 SAMTools SNP 67571 67571 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41502 SAMTools SNP 69204 69204 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41502 SAMTools SNP 76013 76013 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 79070 79070 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41502 SAMTools SNP 79117 79117 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41502 SAMTools SNP 101075 101075 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C6.4e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold41502 SAMTools SNP 101584 101584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.19%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 102836 102836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41502 SAMTools SNP 103044 103044 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41502 SAMTools SNP 103974 103974 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold41502 SAMTools SNP 103977 103977 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold41502 SAMTools SNP 105258 105258 80.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold41502 SAMTools SNP 105342 105342 7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C24%2C0:27 scaffold41502 SAMTools SNP 106714 106714 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C129:99 scaffold41502 SAMTools SNP 106796 106796 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C14%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C3.9e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C247:41 scaffold41502 SAMTools SNP 107361 107361 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold41502 SAMTools SNP 113419 113419 37.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold41502 SAMTools SNP 115891 115891 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41502 SAMTools SNP 115900 115900 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C45%2C0:87 scaffold41502 SAMTools SNP 116339 116339 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41502 SAMTools SNP 116378 116378 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41502 SAMTools SNP 116414 116414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41502 SAMTools SNP 116850 116850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41502 SAMTools SNP 118893 118893 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C1%2C46%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.6e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41502 SAMTools SNP 119085 119085 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold41502 SAMTools SNP 119438 119438 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold41502 SAMTools SNP 119901 119901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41502 SAMTools SNP 120116 120116 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41502 SAMTools SNP 120133 120133 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41522 SAMTools SNP 1360 1360 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41522 SAMTools SNP 1391 1391 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold41522 SAMTools SNP 1546 1546 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 4774 4774 26.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold41522 SAMTools SNP 5438 5438 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41522 SAMTools SNP 6592 6592 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 8876 8876 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41522 SAMTools SNP 12097 12097 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold41522 SAMTools SNP 12178 12178 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C5.9e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C158:37 scaffold41522 SAMTools SNP 13452 13452 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold41522 SAMTools SNP 19347 19347 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C69%2C0:99 scaffold41522 SAMTools SNP 19698 19698 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41522 SAMTools SNP 20903 20903 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41522 SAMTools SNP 20921 20921 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 20963 20963 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 21518 21518 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold41522 SAMTools SNP 21522 21522 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41522 SAMTools SNP 23115 23115 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41522 SAMTools SNP 23656 23656 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41522 SAMTools SNP 23659 23659 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41522 SAMTools SNP 23674 23674 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41522 SAMTools SNP 24334 24334 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41522 SAMTools SNP 24647 24647 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41522 SAMTools SNP 24690 24690 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41522 SAMTools SNP 24774 24774 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold41522 SAMTools SNP 24804 24804 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C15%2C0:27 scaffold41522 SAMTools SNP 25242 25242 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41522 SAMTools SNP 25323 25323 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41522 SAMTools SNP 25326 25326 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41522 SAMTools SNP 25776 25776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41522 SAMTools SNP 25788 25788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41522 SAMTools SNP 26467 26467 41.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold41522 SAMTools SNP 26582 26582 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41522 SAMTools SNP 26620 26620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41522 SAMTools SNP 29456 29456 26.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold41522 SAMTools SNP 29529 29529 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.088%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C221:99 scaffold41522 SAMTools SNP 31795 31795 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41522 SAMTools SNP 33441 33441 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41522 SAMTools SNP 45231 45231 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 45251 45251 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 50886 50886 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41522 SAMTools SNP 68580 68580 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41522 SAMTools SNP 68619 68619 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.27%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C222:96 scaffold41522 SAMTools SNP 68852 68852 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold41522 SAMTools SNP 69820 69820 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold41522 SAMTools SNP 73029 73029 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.18%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C66:69 scaffold41522 SAMTools SNP 73131 73131 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold41522 SAMTools SNP 85273 85273 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41522 SAMTools SNP 89615 89615 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41522 SAMTools SNP 89630 89630 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold41522 SAMTools SNP 89687 89687 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41522 SAMTools SNP 89708 89708 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold41522 SAMTools SNP 91679 91679 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold41522 SAMTools SNP 92815 92815 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D48%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41522 SAMTools SNP 93360 93360 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C0.45%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41522 SAMTools SNP 96053 96053 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C20%2C0%3BMQ%3D44%3BFQ%3D200%3BPV4%3D0.39%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C228:99 scaffold41522 SAMTools SNP 96131 96131 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41522 SAMTools SNP 96182 96182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41522 SAMTools SNP 103069 103069 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41522 SAMTools SNP 113923 113923 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41522 SAMTools SNP 113953 113953 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold41522 SAMTools SNP 114612 114612 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41522 SAMTools SNP 117525 117525 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41522 SAMTools SNP 117922 117922 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41522 SAMTools SNP 117971 117971 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 118006 118006 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41522 SAMTools SNP 118601 118601 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C15%2C0:27 scaffold41522 SAMTools SNP 118616 118616 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41522 SAMTools SNP 119790 119790 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C164:99 scaffold41522 SAMTools SNP 119799 119799 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41530 SAMTools SNP 133 133 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C47%2C1%3BMQ%3D30%3BFQ%3D33%3BPV4%3D1%2C0.43%2C0.00012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C60:63 scaffold41530 SAMTools SNP 1201 1201 34 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold41530 SAMTools SNP 1279 1279 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C93%2C0:99 scaffold41530 SAMTools SNP 11616 11616 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.007%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold41530 SAMTools SNP 11700 11700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41530 SAMTools SNP 11910 11910 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3e-09%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C178:33 scaffold41530 SAMTools SNP 12439 12439 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41530 SAMTools SNP 12654 12654 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41530 SAMTools SNP 13023 13023 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C102%2C0:99 scaffold41530 SAMTools SNP 13544 13544 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C1%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold41530 SAMTools SNP 13553 13553 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41530 SAMTools SNP 13622 13622 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41530 SAMTools SNP 13634 13634 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0048%2C0.14%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold41530 SAMTools SNP 13640 13640 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0023%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C160:99 scaffold41530 SAMTools SNP 14974 14974 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold41530 SAMTools SNP 15001 15001 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold41530 SAMTools SNP 15004 15004 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41530 SAMTools SNP 15133 15133 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41530 SAMTools SNP 15607 15607 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41530 SAMTools SNP 15673 15673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41530 SAMTools SNP 16117 16117 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.62%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold41530 SAMTools SNP 16159 16159 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.17%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41530 SAMTools SNP 16216 16216 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 16870 16870 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C24%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 17255 17255 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold41530 SAMTools SNP 19207 19207 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41530 SAMTools SNP 28190 28190 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 31719 31719 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.1e-09%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C219:28 scaffold41530 SAMTools SNP 31820 31820 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41530 SAMTools SNP 31839 31839 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41530 SAMTools SNP 35825 35825 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D44.9%3BPV4%3D0.47%2C0.07%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C74:75 scaffold41530 SAMTools SNP 35894 35894 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41530 SAMTools SNP 37085 37085 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41530 SAMTools SNP 38454 38454 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C212:99 scaffold41530 SAMTools SNP 39841 39841 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C61%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 40609 40609 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold41530 SAMTools SNP 40621 40621 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.13%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 40666 40666 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41530 SAMTools SNP 41469 41469 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.0012%2C1%2C7.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41530 SAMTools SNP 41475 41475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41530 SAMTools SNP 41523 41523 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C119%2C14%2C7%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00097%2C9.9e-10%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41530 SAMTools SNP 41544 41544 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C119%2C17%2C10%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0018%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41530 SAMTools SNP 44697 44697 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41530 SAMTools SNP 48430 48430 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C10%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.4%2C7.3e-10%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold41530 SAMTools SNP 48777 48777 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.56%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41530 SAMTools SNP 48800 48800 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold41530 SAMTools SNP 75105 75105 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C20%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.038%2C0.23%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold41530 SAMTools SNP 75114 75114 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.042%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41530 SAMTools SNP 75132 75132 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.028%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold41530 SAMTools SNP 75155 75155 87 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.56%2C0.1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold41530 SAMTools SNP 79086 79086 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41530 SAMTools SNP 79129 79129 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41530 SAMTools SNP 93661 93661 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold41530 SAMTools SNP 101700 101700 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41530 SAMTools SNP 101767 101767 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41530 SAMTools SNP 101804 101804 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold41530 SAMTools SNP 105938 105938 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41530 SAMTools SNP 105969 105969 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.24%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C172:99 scaffold41530 SAMTools SNP 107237 107237 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C148:99 scaffold41530 SAMTools SNP 107301 107301 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41530 SAMTools SNP 107434 107434 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41530 SAMTools SNP 109780 109780 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41530 SAMTools SNP 111280 111280 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41530 SAMTools SNP 113536 113536 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.4%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41534 SAMTools SNP 4273 4273 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 5162 5162 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41534 SAMTools SNP 5192 5192 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41534 SAMTools SNP 5613 5613 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41534 SAMTools SNP 5667 5667 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 5679 5679 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 8275 8275 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41534 SAMTools SNP 8296 8296 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold41534 SAMTools SNP 8468 8468 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 8471 8471 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 8730 8730 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41534 SAMTools SNP 10196 10196 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 11470 11470 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold41534 SAMTools SNP 11527 11527 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 11530 11530 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 11536 11536 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 11560 11560 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41534 SAMTools SNP 12562 12562 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 13035 13035 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41534 SAMTools SNP 13047 13047 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41534 SAMTools SNP 13167 13167 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41534 SAMTools SNP 13638 13638 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41534 SAMTools SNP 14887 14887 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41534 SAMTools SNP 15264 15264 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41534 SAMTools SNP 15793 15793 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41534 SAMTools SNP 15801 15801 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41534 SAMTools SNP 16593 16593 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 17714 17714 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41534 SAMTools SNP 18401 18401 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold41534 SAMTools SNP 18820 18820 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41534 SAMTools SNP 18844 18844 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41534 SAMTools SNP 21565 21565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41534 SAMTools SNP 22064 22064 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold41534 SAMTools SNP 22411 22411 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C131:36 scaffold41534 SAMTools SNP 22456 22456 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C20%2C12%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.031%2C6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C57:60 scaffold41534 SAMTools SNP 22540 22540 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold41534 SAMTools SNP 23319 23319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 23687 23687 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 24504 24504 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 24513 24513 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 25312 25312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 25351 25351 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 26264 26264 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C149:77 scaffold41534 SAMTools SNP 26285 26285 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold41534 SAMTools SNP 29782 29782 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold41534 SAMTools SNP 32159 32159 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41534 SAMTools SNP 32778 32778 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold41534 SAMTools SNP 32808 32808 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41534 SAMTools SNP 32829 32829 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41534 SAMTools SNP 34427 34427 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41534 SAMTools SNP 34447 34447 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold41534 SAMTools SNP 36214 36214 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0015%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold41534 SAMTools SNP 36216 36216 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C129:63 scaffold41534 SAMTools SNP 36658 36658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 37000 37000 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 37075 37075 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41534 SAMTools SNP 37739 37739 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold41534 SAMTools SNP 38582 38582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41534 SAMTools SNP 38648 38648 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C39%2C0:75 scaffold41534 SAMTools SNP 41879 41879 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41534 SAMTools SNP 41888 41888 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41534 SAMTools SNP 43177 43177 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 43957 43957 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41534 SAMTools SNP 44016 44016 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 44043 44043 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41534 SAMTools SNP 52282 52282 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41534 SAMTools SNP 53843 53843 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41534 SAMTools SNP 55798 55798 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41534 SAMTools SNP 56487 56487 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold41534 SAMTools SNP 56517 56517 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41534 SAMTools SNP 57236 57236 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41534 SAMTools SNP 57241 57241 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41534 SAMTools SNP 61450 61450 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold41534 SAMTools SNP 61471 61471 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold41534 SAMTools SNP 61626 61626 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C7:10 scaffold41534 SAMTools SNP 61639 61639 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold41534 SAMTools SNP 61896 61896 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41534 SAMTools SNP 62680 62680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41534 SAMTools SNP 63174 63174 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41534 SAMTools SNP 63189 63189 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C5%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.5%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold41534 SAMTools SNP 63246 63246 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C2%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C3.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41534 SAMTools SNP 63273 63273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41534 SAMTools SNP 63870 63870 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41534 SAMTools SNP 63946 63946 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold41534 SAMTools SNP 63952 63952 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41534 SAMTools SNP 71534 71534 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold41534 SAMTools SNP 98617 98617 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41540 SAMTools SNP 7864 7864 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41540 SAMTools SNP 9821 9821 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41540 SAMTools SNP 9828 9828 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41540 SAMTools SNP 9936 9936 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41540 SAMTools SNP 9973 9973 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41540 SAMTools SNP 10331 10331 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41540 SAMTools SNP 10384 10384 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41540 SAMTools SNP 10443 10443 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41540 SAMTools SNP 15218 15218 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41540 SAMTools SNP 15230 15230 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41540 SAMTools SNP 15268 15268 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41540 SAMTools SNP 15272 15272 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41540 SAMTools SNP 29127 29127 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold41540 SAMTools SNP 30099 30099 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41540 SAMTools SNP 46067 46067 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D4.42%3BPV4%3D1%2C2.1e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C32:32 scaffold41540 SAMTools SNP 46269 46269 31.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold41540 SAMTools SNP 46864 46864 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.03%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C231:99 scaffold41540 SAMTools SNP 47220 47220 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C10%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C114%2C0:99 scaffold41540 SAMTools SNP 47529 47529 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C40%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C135%2C0:99 scaffold41540 SAMTools SNP 48219 48219 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C11%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00064%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41540 SAMTools SNP 49272 49272 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.61%2C2.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold41540 SAMTools SNP 49398 49398 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C72%2C0:99 scaffold41540 SAMTools SNP 49455 49455 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C18%2C0:33 scaffold41540 SAMTools SNP 49807 49807 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold41540 SAMTools SNP 58523 58523 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41540 SAMTools SNP 59575 59575 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41540 SAMTools SNP 60723 60723 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41540 SAMTools SNP 60735 60735 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41540 SAMTools SNP 61321 61321 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41540 SAMTools SNP 61363 61363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C1%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold41540 SAMTools SNP 61487 61487 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41540 SAMTools SNP 62130 62130 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41540 SAMTools SNP 66119 66119 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0374%3BAF1%3D0.5007%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-5.43%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C24:27 scaffold41540 SAMTools SNP 66615 66615 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41540 SAMTools SNP 66751 66751 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C66%2C0:99 scaffold41540 SAMTools SNP 69431 69431 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C75%2C0:99 scaffold41540 SAMTools SNP 71248 71248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C22%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D2.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold41540 SAMTools SNP 72626 72626 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C21%2C2%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.14%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C130:99 scaffold41540 SAMTools SNP 72701 72701 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.023%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C204:70 scaffold41540 SAMTools SNP 73775 73775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41540 SAMTools SNP 73817 73817 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C38%2C14%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D0.0083%2C0.31%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold41540 SAMTools SNP 74725 74725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C38%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold41540 SAMTools SNP 74746 74746 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold41540 SAMTools SNP 109037 109037 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold41540 SAMTools SNP 110598 110598 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C121%2C10%2C31%3BMQ%3D41%3BFQ%3D224%3BPV4%3D3.7e-06%2C0.032%2C0.45%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold41540 SAMTools SNP 110641 110641 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C24%2C0:45 scaffold41540 SAMTools SNP 110788 110788 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C9%2C76%2C0%3BMQ%3D43%3BFQ%3D206%3BPV4%3D0.012%2C0.4%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold41540 SAMTools SNP 112302 112302 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D693%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C164%2C82%2C417%3BMQ%3D39%3BFQ%3D55%3BPV4%3D3.9e-10%2C1%2C0.098%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C82:85 scaffold41540 SAMTools SNP 112465 112465 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C0.27%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C32:35 scaffold41540 SAMTools SNP 112483 112483 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D45%3BFQ%3D-21%3BPV4%3D0.18%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C6:9 scaffold41540 SAMTools SNP 112691 112691 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D12%2C5%2C15%2C0%3BMQ%3D23%3BFQ%3D4.13%3BPV4%3D0.046%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C29:32 scaffold41540 SAMTools SNP 113394 113394 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold41540 SAMTools SNP 114540 114540 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41540 SAMTools SNP 114645 114645 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold41540 SAMTools SNP 114694 114694 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.55%2C0.15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold41540 SAMTools SNP 115262 115262 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C42%2C0%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41540 SAMTools SNP 115277 115277 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C39%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold41540 SAMTools SNP 115316 115316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41540 SAMTools SNP 115373 115373 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.54%2C1.5e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold41540 SAMTools SNP 116603 116603 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C169:99 scaffold41540 SAMTools SNP 116629 116629 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41540 SAMTools SNP 116683 116683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41540 SAMTools SNP 117103 117103 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold41540 SAMTools SNP 118543 118543 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41546 SAMTools SNP 1381 1381 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 4486 4486 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 5298 5298 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold41546 SAMTools SNP 54136 54136 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41546 SAMTools SNP 54142 54142 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41546 SAMTools SNP 54417 54417 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C20%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.57%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41546 SAMTools SNP 54685 54685 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.28%2C0.42%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41546 SAMTools SNP 54706 54706 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41546 SAMTools SNP 55169 55169 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold41546 SAMTools SNP 55187 55187 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41546 SAMTools SNP 55238 55238 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 55314 55314 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41546 SAMTools SNP 55577 55577 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41546 SAMTools SNP 57198 57198 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41546 SAMTools SNP 64190 64190 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold41546 SAMTools SNP 74166 74166 57.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold41546 SAMTools SNP 81520 81520 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold41546 SAMTools SNP 81526 81526 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.26%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold41546 SAMTools SNP 81665 81665 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 82249 82249 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C106:99 scaffold41546 SAMTools SNP 82252 82252 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41546 SAMTools SNP 83807 83807 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold41546 SAMTools SNP 83866 83866 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C38:41 scaffold41546 SAMTools SNP 86411 86411 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41546 SAMTools SNP 86457 86457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41546 SAMTools SNP 89952 89952 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41546 SAMTools SNP 90357 90357 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold41546 SAMTools SNP 95947 95947 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 95974 95974 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41546 SAMTools SNP 96540 96540 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41546 SAMTools SNP 96548 96548 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41546 SAMTools SNP 117183 117183 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41546 SAMTools SNP 117299 117299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C57%2C0%3BMQ%3D49%3BFQ%3D-152%3BPV4%3D1%2C1%2C0.41%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold41546 SAMTools SNP 119762 119762 22 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D27%2C11%2C4%2C0%3BMQ%3D15%3BFQ%3D-109%3BPV4%3D0.56%2C0.29%2C1%2C2.2e-26;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C142%2C60%2C142%2C0%2C60:97 scaffold41546 SAMTools SNP 119946 119946 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C45%2C15%3BMQ%3D22%3BFQ%3D109%3BPV4%3D0.65%2C0.16%2C0.013%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C189:99 scaffold41546 SAMTools SNP 119999 119999 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C205:99 scaffold41546 SAMTools SNP 120365 120365 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C10%2C25%3BMQ%3D26%3BFQ%3D188%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C218:99 scaffold41550 SAMTools SNP 978 978 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41550 SAMTools SNP 8087 8087 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41550 SAMTools SNP 14705 14705 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41550 SAMTools SNP 14726 14726 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41550 SAMTools SNP 49960 49960 147 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C51%2C0%2C176%2C35%2C173:99 scaffold41550 SAMTools SNP 63821 63821 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41550 SAMTools SNP 77888 77888 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41550 SAMTools SNP 77903 77903 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41550 SAMTools SNP 78248 78248 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41550 SAMTools SNP 84387 84387 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0284%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold41550 SAMTools SNP 90045 90045 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41550 SAMTools SNP 97127 97127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41550 SAMTools SNP 97491 97491 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold41550 SAMTools SNP 114862 114862 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41560 SAMTools SNP 384 384 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41560 SAMTools SNP 10059 10059 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold41560 SAMTools SNP 10269 10269 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold41560 SAMTools SNP 65618 65618 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C60%2C0:99 scaffold41560 SAMTools SNP 65626 65626 154 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C48%2C0:93 scaffold41560 SAMTools SNP 82815 82815 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41560 SAMTools SNP 82822 82822 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41560 SAMTools SNP 92203 92203 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41560 SAMTools SNP 113068 113068 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C63%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41560 SAMTools SNP 113224 113224 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.43%2C1.7e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41560 SAMTools SNP 113588 113588 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41560 SAMTools SNP 113814 113814 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.12%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold41560 SAMTools SNP 113818 113818 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41560 SAMTools SNP 113858 113858 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.29%2C0.3%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C249:99 scaffold41560 SAMTools SNP 114034 114034 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C0.021%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41560 SAMTools SNP 115046 115046 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41560 SAMTools SNP 116619 116619 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41560 SAMTools SNP 117067 117067 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.017%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41560 SAMTools SNP 117985 117985 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41560 SAMTools SNP 117992 117992 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41560 SAMTools SNP 118127 118127 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41568 SAMTools SNP 15296 15296 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold41568 SAMTools SNP 15618 15618 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.16%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold41568 SAMTools SNP 15619 15619 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41568 SAMTools SNP 16687 16687 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C66%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41568 SAMTools SNP 17252 17252 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41568 SAMTools SNP 76474 76474 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41572 SAMTools SNP 380 380 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold41572 SAMTools SNP 14500 14500 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C7%2C10%2C0%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D0.084%2C3.4e-20%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41572 SAMTools SNP 14747 14747 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D47%3BFQ%3D38%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C211:68 scaffold41572 SAMTools SNP 14763 14763 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D47%3BFQ%3D93%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C207:99 scaffold41572 SAMTools SNP 14766 14766 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D46%3BFQ%3D24%3BPV4%3D1%2C0.26%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C209:54 scaffold41572 SAMTools SNP 14772 14772 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D47%3BFQ%3D89%3BPV4%3D1%2C2.7e-06%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold41572 SAMTools SNP 14796 14796 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D47%3BFQ%3D40%3BPV4%3D0.2%2C0.094%2C0.066%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C254:70 scaffold41572 SAMTools SNP 33012 33012 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0037%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C165:99 scaffold41572 SAMTools SNP 33057 33057 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C241:69 scaffold41572 SAMTools SNP 33063 33063 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41572 SAMTools SNP 33066 33066 58.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold41572 SAMTools SNP 33108 33108 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41572 SAMTools SNP 33809 33809 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41572 SAMTools SNP 41656 41656 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41572 SAMTools SNP 41684 41684 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41572 SAMTools SNP 41720 41720 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41572 SAMTools SNP 41747 41747 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41572 SAMTools SNP 42133 42133 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41572 SAMTools SNP 42688 42688 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41572 SAMTools SNP 43124 43124 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41572 SAMTools SNP 43184 43184 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold41572 SAMTools SNP 43193 43193 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41572 SAMTools SNP 43751 43751 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41572 SAMTools SNP 43752 43752 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C33:36 scaffold41572 SAMTools SNP 43848 43848 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.28%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C34:37 scaffold41572 SAMTools SNP 43878 43878 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold41572 SAMTools SNP 44172 44172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41572 SAMTools SNP 44690 44690 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold41572 SAMTools SNP 44694 44694 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold41572 SAMTools SNP 44733 44733 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold41572 SAMTools SNP 44844 44844 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold41572 SAMTools SNP 45041 45041 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.37%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C217:99 scaffold41572 SAMTools SNP 45085 45085 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C3:69 scaffold41572 SAMTools SNP 45091 45091 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C149:99 scaffold41572 SAMTools SNP 45115 45115 206 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C147:99 scaffold41572 SAMTools SNP 46976 46976 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.49%2C0.42%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41572 SAMTools SNP 47035 47035 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold41572 SAMTools SNP 47039 47039 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold41572 SAMTools SNP 51927 51927 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41572 SAMTools SNP 55441 55441 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41572 SAMTools SNP 65724 65724 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41572 SAMTools SNP 66870 66870 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41572 SAMTools SNP 67584 67584 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0:57 scaffold41572 SAMTools SNP 67602 67602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41572 SAMTools SNP 67983 67983 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C105%2C0:99 scaffold41572 SAMTools SNP 68076 68076 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C42%2C0:81 scaffold41572 SAMTools SNP 70271 70271 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C45%2C0:87 scaffold41572 SAMTools SNP 70308 70308 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41572 SAMTools SNP 70362 70362 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41572 SAMTools SNP 70371 70371 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.49%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41572 SAMTools SNP 70726 70726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 70789 70789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 72444 72444 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 72843 72843 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C10%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.014%2C3.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold41572 SAMTools SNP 73380 73380 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.55%2C2.9e-12%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold41572 SAMTools SNP 73497 73497 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41572 SAMTools SNP 73539 73539 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41572 SAMTools SNP 73544 73544 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41572 SAMTools SNP 73546 73546 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C232:98 scaffold41572 SAMTools SNP 74133 74133 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C249:99 scaffold41572 SAMTools SNP 74146 74146 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41572 SAMTools SNP 74988 74988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 75575 75575 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 76019 76019 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41572 SAMTools SNP 76020 76020 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold41572 SAMTools SNP 76090 76090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold41572 SAMTools SNP 76341 76341 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C13%2C10%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.01%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold41572 SAMTools SNP 76611 76611 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.28%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41572 SAMTools SNP 76634 76634 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41572 SAMTools SNP 76976 76976 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.026%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold41572 SAMTools SNP 77021 77021 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.00011%2C0.18%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold41572 SAMTools SNP 77028 77028 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 77257 77257 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 77633 77633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41572 SAMTools SNP 77651 77651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41572 SAMTools SNP 81322 81322 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 81604 81604 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41572 SAMTools SNP 81613 81613 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 81921 81921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41572 SAMTools SNP 81954 81954 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41572 SAMTools SNP 82968 82968 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C27%2C0:51 scaffold41572 SAMTools SNP 83130 83130 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold41572 SAMTools SNP 84856 84856 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 85785 85785 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold41572 SAMTools SNP 85797 85797 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41572 SAMTools SNP 86316 86316 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41572 SAMTools SNP 86322 86322 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41572 SAMTools SNP 86866 86866 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C244:99 scaffold41572 SAMTools SNP 86884 86884 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold41572 SAMTools SNP 86899 86899 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold41572 SAMTools SNP 86968 86968 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 88880 88880 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41572 SAMTools SNP 88886 88886 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41572 SAMTools SNP 88943 88943 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41572 SAMTools SNP 88952 88952 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41572 SAMTools SNP 89493 89493 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0133%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41572 SAMTools SNP 89557 89557 19.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold41572 SAMTools SNP 89597 89597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 89856 89856 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41572 SAMTools SNP 89887 89887 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 90796 90796 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D47%3BFQ%3D78%3BPV4%3D0.44%2C0.45%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C105:99 scaffold41572 SAMTools SNP 93708 93708 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold41572 SAMTools SNP 93732 93732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41572 SAMTools SNP 94826 94826 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.21%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41572 SAMTools SNP 95493 95493 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41572 SAMTools SNP 95997 95997 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41572 SAMTools SNP 96012 96012 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold41572 SAMTools SNP 96063 96063 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C183:99 scaffold41572 SAMTools SNP 96635 96635 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C2.7e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41572 SAMTools SNP 96728 96728 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.73%2C1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold41572 SAMTools SNP 96767 96767 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41572 SAMTools SNP 96779 96779 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.12%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41572 SAMTools SNP 97111 97111 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41572 SAMTools SNP 97147 97147 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold41572 SAMTools SNP 101725 101725 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C30%2C0:57 scaffold41572 SAMTools SNP 102153 102153 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41572 SAMTools SNP 103418 103418 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41572 SAMTools SNP 103430 103430 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41572 SAMTools SNP 103475 103475 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41572 SAMTools SNP 104072 104072 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold41572 SAMTools SNP 104289 104289 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 104367 104367 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C16%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.26%2C9.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold41572 SAMTools SNP 104400 104400 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41572 SAMTools SNP 104634 104634 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C45%2C0%2C11%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41572 SAMTools SNP 104681 104681 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C3%2C15%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C0.0031%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold41572 SAMTools SNP 105296 105296 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41572 SAMTools SNP 112233 112233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C52%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold41572 SAMTools SNP 112335 112335 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold41572 SAMTools SNP 112368 112368 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.033%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41572 SAMTools SNP 123384 123384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 82 82 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 83 83 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold41588 SAMTools SNP 217 217 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41588 SAMTools SNP 3476 3476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41588 SAMTools SNP 6728 6728 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41588 SAMTools SNP 6732 6732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41588 SAMTools SNP 7460 7460 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 7508 7508 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41588 SAMTools SNP 7544 7544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41588 SAMTools SNP 8107 8107 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41588 SAMTools SNP 8113 8113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41588 SAMTools SNP 8360 8360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C31%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41588 SAMTools SNP 10207 10207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C24%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 12327 12327 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C44%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41588 SAMTools SNP 12866 12866 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C30%2C0:48 scaffold41588 SAMTools SNP 13321 13321 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C8%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41588 SAMTools SNP 14117 14117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C20%2C51%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0015%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 14582 14582 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41588 SAMTools SNP 18790 18790 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41588 SAMTools SNP 19239 19239 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C22%2C44%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 19296 19296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C55%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1.4e-57%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 19717 19717 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C57%2C1%2C12%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.68%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold41588 SAMTools SNP 19947 19947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41588 SAMTools SNP 19962 19962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C10%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold41588 SAMTools SNP 20064 20064 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C37%3BMQ%3D50%3BFQ%3D-126%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41588 SAMTools SNP 20079 20079 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C66%3BMQ%3D50%3BFQ%3D-202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold41588 SAMTools SNP 20766 20766 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41588 SAMTools SNP 21092 21092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C27%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold41588 SAMTools SNP 21136 21136 57.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold41588 SAMTools SNP 21825 21825 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C65%2C35%2C56%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.16%2C1.3e-109%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41588 SAMTools SNP 22565 22565 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C75%2C0:99 scaffold41588 SAMTools SNP 27184 27184 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold41588 SAMTools SNP 27190 27190 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41588 SAMTools SNP 27301 27301 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.16%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold41588 SAMTools SNP 27719 27719 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 28315 28315 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 28572 28572 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41588 SAMTools SNP 29277 29277 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41588 SAMTools SNP 29295 29295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41588 SAMTools SNP 29558 29558 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C250:99 scaffold41588 SAMTools SNP 29574 29574 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.048%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C216:99 scaffold41588 SAMTools SNP 29901 29901 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C2%2C16%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold41588 SAMTools SNP 30398 30398 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41588 SAMTools SNP 30535 30535 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 30669 30669 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C38:41 scaffold41588 SAMTools SNP 31078 31078 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold41588 SAMTools SNP 31137 31137 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41588 SAMTools SNP 31144 31144 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C195:99 scaffold41588 SAMTools SNP 31669 31669 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C240:99 scaffold41588 SAMTools SNP 32214 32214 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold41588 SAMTools SNP 33838 33838 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41588 SAMTools SNP 33847 33847 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41588 SAMTools SNP 33877 33877 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold41588 SAMTools SNP 34031 34031 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.092%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41588 SAMTools SNP 34475 34475 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41588 SAMTools SNP 34502 34502 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold41588 SAMTools SNP 34550 34550 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold41588 SAMTools SNP 34768 34768 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41588 SAMTools SNP 35565 35565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41588 SAMTools SNP 35628 35628 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41588 SAMTools SNP 35703 35703 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41588 SAMTools SNP 36323 36323 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41.4%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C77:71 scaffold41588 SAMTools SNP 36702 36702 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 37642 37642 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41588 SAMTools SNP 37682 37682 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41588 SAMTools SNP 39905 39905 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 39923 39923 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 40311 40311 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D49%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41588 SAMTools SNP 40317 40317 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold41588 SAMTools SNP 40338 40338 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C3%2C4%3BMQ%3D49%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold41588 SAMTools SNP 40488 40488 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C4%2C5%3BMQ%3D49%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold41588 SAMTools SNP 40940 40940 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41588 SAMTools SNP 40949 40949 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.022%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41588 SAMTools SNP 40974 40974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41588 SAMTools SNP 40988 40988 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C12%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold41588 SAMTools SNP 41009 41009 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0021%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold41588 SAMTools SNP 41010 41010 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0021%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold41588 SAMTools SNP 41190 41190 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C14%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.014%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold41588 SAMTools SNP 42529 42529 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.33%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold41588 SAMTools SNP 42705 42705 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41588 SAMTools SNP 42768 42768 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 43132 43132 155 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C67%2C250%2C0%2C238:45 scaffold41588 SAMTools SNP 43490 43490 62.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold41588 SAMTools SNP 43495 43495 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D29%3BFQ%3D9.36%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C42:38 scaffold41588 SAMTools SNP 43926 43926 91.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold41588 SAMTools SNP 44128 44128 171 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D40%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C45%2C0%2C186%2C15%2C183:87 scaffold41588 SAMTools SNP 44185 44185 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold41588 SAMTools SNP 44231 44231 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41588 SAMTools SNP 44593 44593 154 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold41588 SAMTools SNP 44611 44611 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41588 SAMTools SNP 45807 45807 22.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold41588 SAMTools SNP 48606 48606 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0011%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C123:70 scaffold41588 SAMTools SNP 48744 48744 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 48759 48759 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 49195 49195 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41588 SAMTools SNP 49199 49199 138 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C32%2C164%2C0%2C161:27 scaffold41588 SAMTools SNP 49826 49826 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C242:99 scaffold41588 SAMTools SNP 49847 49847 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41588 SAMTools SNP 50456 50456 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41588 SAMTools SNP 51745 51745 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.3%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold41588 SAMTools SNP 51763 51763 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C73:76 scaffold41588 SAMTools SNP 52186 52186 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41588 SAMTools SNP 52201 52201 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41588 SAMTools SNP 56636 56636 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C9%2C4%3BMQ%3D47%3BFQ%3D172%3BPV4%3D0.32%2C0.051%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C199:99 scaffold41588 SAMTools SNP 56886 56886 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C36%2C0:69 scaffold41588 SAMTools SNP 56979 56979 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.36%2C2.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41588 SAMTools SNP 57264 57264 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C63%2C0:99 scaffold41588 SAMTools SNP 57332 57332 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41588 SAMTools SNP 57540 57540 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C8.1e-20%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold41588 SAMTools SNP 57951 57951 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41588 SAMTools SNP 58010 58010 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41588 SAMTools SNP 60893 60893 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 60990 60990 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41588 SAMTools SNP 65241 65241 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold41588 SAMTools SNP 66407 66407 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41588 SAMTools SNP 66760 66760 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C33%2C0:63 scaffold41588 SAMTools SNP 66785 66785 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold41588 SAMTools SNP 66913 66913 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41588 SAMTools SNP 67161 67161 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold41588 SAMTools SNP 67166 67166 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold41588 SAMTools SNP 67197 67197 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41588 SAMTools SNP 69045 69045 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold41588 SAMTools SNP 70505 70505 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41588 SAMTools SNP 78498 78498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C188%2C29%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41594 SAMTools SNP 5152 5152 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41594 SAMTools SNP 5194 5194 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41594 SAMTools SNP 5228 5228 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41594 SAMTools SNP 5266 5266 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41594 SAMTools SNP 6414 6414 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41594 SAMTools SNP 6450 6450 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41594 SAMTools SNP 9924 9924 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold41594 SAMTools SNP 10232 10232 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold41594 SAMTools SNP 10837 10837 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41594 SAMTools SNP 10860 10860 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C0.00012%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold41594 SAMTools SNP 11692 11692 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41594 SAMTools SNP 12067 12067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41594 SAMTools SNP 12447 12447 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold41594 SAMTools SNP 12711 12711 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C109:31 scaffold41594 SAMTools SNP 12722 12722 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C88:69 scaffold41594 SAMTools SNP 12723 12723 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C88:69 scaffold41594 SAMTools SNP 12775 12775 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41594 SAMTools SNP 12798 12798 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41594 SAMTools SNP 13004 13004 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41594 SAMTools SNP 13070 13070 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41594 SAMTools SNP 13618 13618 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold41594 SAMTools SNP 14407 14407 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41594 SAMTools SNP 14955 14955 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold41594 SAMTools SNP 16087 16087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41594 SAMTools SNP 16118 16118 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41594 SAMTools SNP 16369 16369 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41594 SAMTools SNP 16390 16390 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41594 SAMTools SNP 47472 47472 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold41598 SAMTools SNP 3009 3009 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold41598 SAMTools SNP 3075 3075 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C5.7e-06%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold41598 SAMTools SNP 3123 3123 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41598 SAMTools SNP 3139 3139 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C25%2C0%3BMQ%3D37%3BFQ%3D46%3BPV4%3D5.5e-12%2C1%2C3.5e-11%2C6.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C252:76 scaffold41598 SAMTools SNP 3604 3604 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C0%2C10%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.094%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold41598 SAMTools SNP 3634 3634 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41598 SAMTools SNP 4352 4352 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41598 SAMTools SNP 16859 16859 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41598 SAMTools SNP 19228 19228 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41598 SAMTools SNP 19232 19232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41598 SAMTools SNP 19563 19563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41598 SAMTools SNP 19645 19645 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 19646 19646 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold41598 SAMTools SNP 19662 19662 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C3%2C13%2C15%3BMQ%3D50%3BFQ%3D88%3BPV4%3D6e-13%2C2.9e-05%2C1%2C7.4e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C249:99 scaffold41598 SAMTools SNP 29509 29509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41598 SAMTools SNP 29512 29512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41598 SAMTools SNP 29662 29662 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41598 SAMTools SNP 29689 29689 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C77%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold41598 SAMTools SNP 30027 30027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold41598 SAMTools SNP 30092 30092 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold41598 SAMTools SNP 30585 30585 57.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold41598 SAMTools SNP 30960 30960 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41598 SAMTools SNP 30965 30965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41598 SAMTools SNP 31024 31024 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold41598 SAMTools SNP 31036 31036 132 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C29:32 scaffold41598 SAMTools SNP 31633 31633 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41598 SAMTools SNP 31634 31634 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41598 SAMTools SNP 31680 31680 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C35:38 scaffold41598 SAMTools SNP 31706 31706 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41598 SAMTools SNP 31912 31912 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41598 SAMTools SNP 32002 32002 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.29%2C0.072%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C160:44 scaffold41598 SAMTools SNP 32339 32339 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.43%2C0.013%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C117:99 scaffold41598 SAMTools SNP 32996 32996 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C23%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0031%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C139:99 scaffold41598 SAMTools SNP 33569 33569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C11%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 33615 33615 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C7%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0038%2C5.1e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold41598 SAMTools SNP 33635 33635 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C21%2C0:39 scaffold41598 SAMTools SNP 33698 33698 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C553%2C21%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41598 SAMTools SNP 33719 33719 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D660%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D378%2C19%2C247%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 34248 34248 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D846%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C231%2C67%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C9.5e-45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 34472 34472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C131%2C8%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 34561 34561 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C29%2C49%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C9.3e-15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 34577 34577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C25%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.05%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 34706 34706 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C51%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold41598 SAMTools SNP 34809 34809 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C75%2C0:99 scaffold41598 SAMTools SNP 34908 34908 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C22%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 35221 35221 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C65%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold41598 SAMTools SNP 35265 35265 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 35377 35377 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C63%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold41598 SAMTools SNP 35389 35389 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C100%2C3%2C9%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.08%2C0.19%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41598 SAMTools SNP 35543 35543 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41598 SAMTools SNP 35621 35621 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold41598 SAMTools SNP 36818 36818 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00085%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 37098 37098 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.15%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 37105 37105 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.023%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 37554 37554 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C25%2C59%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41598 SAMTools SNP 39999 39999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C16%2C34%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C3.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 40035 40035 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C12%2C28%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 40078 40078 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D575%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D301%2C35%2C189%2C49%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C4.5e-07%2C9.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 43437 43437 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 44865 44865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 45307 45307 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41598 SAMTools SNP 46328 46328 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41598 SAMTools SNP 46373 46373 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 46376 46376 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41598 SAMTools SNP 46388 46388 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41598 SAMTools SNP 46395 46395 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41598 SAMTools SNP 47253 47253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 47264 47264 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold41598 SAMTools SNP 47410 47410 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C200:69 scaffold41598 SAMTools SNP 47418 47418 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41598 SAMTools SNP 47421 47421 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41598 SAMTools SNP 47451 47451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41598 SAMTools SNP 48958 48958 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 48977 48977 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 49563 49563 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 49605 49605 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41598 SAMTools SNP 49618 49618 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41598 SAMTools SNP 50003 50003 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C33%2C0:63 scaffold41598 SAMTools SNP 50019 50019 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41598 SAMTools SNP 50561 50561 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold41598 SAMTools SNP 50585 50585 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41598 SAMTools SNP 51005 51005 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 52013 52013 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41598 SAMTools SNP 52046 52046 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41598 SAMTools SNP 52310 52310 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41598 SAMTools SNP 52759 52759 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41598 SAMTools SNP 52769 52769 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold41598 SAMTools SNP 53103 53103 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold41598 SAMTools SNP 53178 53178 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold41598 SAMTools SNP 53388 53388 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41598 SAMTools SNP 53510 53510 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41598 SAMTools SNP 54935 54935 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41598 SAMTools SNP 55019 55019 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41598 SAMTools SNP 55783 55783 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41598 SAMTools SNP 55818 55818 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold41598 SAMTools SNP 56339 56339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41598 SAMTools SNP 56348 56348 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C227:71 scaffold41598 SAMTools SNP 72939 72939 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41598 SAMTools SNP 104678 104678 9.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold41598 SAMTools SNP 119213 119213 42.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C2%2C11%3BMQ%3D16%3BFQ%3D-38%3BPV4%3D0.52%2C0.2%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C11%2C0:19 scaffold41598 SAMTools SNP 119274 119274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C7%2C13%3BMQ%3D29%3BFQ%3D-49%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold41598 SAMTools SNP 122478 122478 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C40%2C0%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.0012%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C49%2C0:95 scaffold41598 SAMTools SNP 122492 122492 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41598 SAMTools SNP 122579 122579 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C45%2C10%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold41598 SAMTools SNP 122583 122583 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C45%2C14%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D9.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41598 SAMTools SNP 123126 123126 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C27%2C38%3BMQ%3D50%3BFQ%3D143%3BPV4%3D4.2e-07%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold41598 SAMTools SNP 123135 123135 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C27%2C38%3BMQ%3D50%3BFQ%3D143%3BPV4%3D4.2e-07%2C0.16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold41598 SAMTools SNP 123847 123847 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C34%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C228:99 scaffold41598 SAMTools SNP 123891 123891 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C30%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C43%2C0:83 scaffold41598 SAMTools SNP 123918 123918 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold416 SAMTools SNP 24123 24123 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 24152 24152 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 24197 24197 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 44569 44569 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold416 SAMTools SNP 112739 112739 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C0.00061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold416 SAMTools SNP 119493 119493 23.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold416 SAMTools SNP 130206 130206 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold416 SAMTools SNP 154050 154050 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 169319 169319 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold416 SAMTools SNP 183413 183413 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold416 SAMTools SNP 184847 184847 59.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold416 SAMTools SNP 184887 184887 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold416 SAMTools SNP 185074 185074 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold416 SAMTools SNP 185131 185131 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.55%2C8.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C174:99 scaffold416 SAMTools SNP 186265 186265 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold416 SAMTools SNP 187261 187261 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D2%2C4%2C52%2C24%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.17%2C0.33%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold416 SAMTools SNP 187294 187294 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C39%2C0:75 scaffold416 SAMTools SNP 187330 187330 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 187897 187897 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D0.33%2C0.029%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold416 SAMTools SNP 187926 187926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 188060 188060 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold416 SAMTools SNP 188074 188074 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold416 SAMTools SNP 188510 188510 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold416 SAMTools SNP 188549 188549 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold416 SAMTools SNP 190036 190036 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 207446 207446 17.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0394%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C9:12 scaffold416 SAMTools SNP 214854 214854 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C18%2C119%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 214905 214905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C49%2C35%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 214923 214923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 215983 215983 58.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold416 SAMTools SNP 222181 222181 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C51%2C13%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C0.049%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 222193 222193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 225662 225662 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C110%2C87%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 226106 226106 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C64%2C0%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 227964 227964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C34%2C15%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D0.11%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold416 SAMTools SNP 228517 228517 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.048%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold416 SAMTools SNP 228556 228556 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.45%2C0.0021%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold416 SAMTools SNP 228912 228912 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C174%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 229165 229165 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C45%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C138%2C0:99 scaffold416 SAMTools SNP 229457 229457 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C57%2C0:99 scaffold416 SAMTools SNP 241972 241972 69.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold416 SAMTools SNP 242300 242300 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C108:99 scaffold416 SAMTools SNP 256642 256642 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold416 SAMTools SNP 256665 256665 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold416 SAMTools SNP 256694 256694 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold416 SAMTools SNP 257693 257693 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold416 SAMTools SNP 257694 257694 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold416 SAMTools SNP 302173 302173 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold416 SAMTools SNP 302174 302174 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold416 SAMTools SNP 302819 302819 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold416 SAMTools SNP 303225 303225 194 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold416 SAMTools SNP 303258 303258 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold416 SAMTools SNP 303273 303273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold416 SAMTools SNP 304301 304301 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 304659 304659 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 304692 304692 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 304804 304804 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C250:97 scaffold416 SAMTools SNP 305049 305049 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold416 SAMTools SNP 305058 305058 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 305604 305604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 308907 308907 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 309075 309075 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C7.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold416 SAMTools SNP 309147 309147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold416 SAMTools SNP 309189 309189 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 310984 310984 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C10%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.3%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C245:99 scaffold416 SAMTools SNP 312078 312078 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C48%2C0:93 scaffold416 SAMTools SNP 312135 312135 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.26%2C1.2e-21%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold416 SAMTools SNP 312573 312573 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 313777 313777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C384%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 314408 314408 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C5%2C62%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold416 SAMTools SNP 314504 314504 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C33%3BMQ%3D50%3BFQ%3D-96%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C69%2C0:99 scaffold416 SAMTools SNP 314746 314746 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold416 SAMTools SNP 314851 314851 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C42%2C9%2C32%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C2.2e-83%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold416 SAMTools SNP 315037 315037 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold416 SAMTools SNP 315509 315509 59.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold416 SAMTools SNP 320108 320108 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold416 SAMTools SNP 320123 320123 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold416 SAMTools SNP 320392 320392 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold416 SAMTools SNP 339703 339703 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold416 SAMTools SNP 339730 339730 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold416 SAMTools SNP 373102 373102 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold416 SAMTools SNP 402817 402817 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold416 SAMTools SNP 402823 402823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C49%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold416 SAMTools SNP 403042 403042 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C13%2C38%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.039%2C1%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold416 SAMTools SNP 403244 403244 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D951%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D421%2C3%2C145%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold416 SAMTools SNP 403404 403404 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D830%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C370%2C3%2C397%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C3.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 403580 403580 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C4%2C12%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold416 SAMTools SNP 403626 403626 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold416 SAMTools SNP 403632 403632 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold416 SAMTools SNP 403795 403795 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C455%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold416 SAMTools SNP 403822 403822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D892%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D512%2C6%2C373%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 404565 404565 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C62%2C35%2C10%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C8.6e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 404594 404594 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C63%2C48%2C15%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C0.00045%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold416 SAMTools SNP 404621 404621 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C53%2C17%2C18%3BMQ%3D42%3BFQ%3D187%3BPV4%3D0.55%2C1%2C0.0028%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold416 SAMTools SNP 405285 405285 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D19%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C66%2C0:99 scaffold41604 SAMTools SNP 320 320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41604 SAMTools SNP 7604 7604 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41616 SAMTools SNP 14403 14403 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41616 SAMTools SNP 14754 14754 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41616 SAMTools SNP 15046 15046 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41616 SAMTools SNP 37540 37540 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold41616 SAMTools SNP 47949 47949 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold41616 SAMTools SNP 49120 49120 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C3%3BMQ%3D46%3BFQ%3D12.3%3BPV4%3D1%2C9.6e-15%2C0.31%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold41616 SAMTools SNP 50111 50111 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41616 SAMTools SNP 63292 63292 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold41616 SAMTools SNP 63568 63568 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41616 SAMTools SNP 63779 63779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41616 SAMTools SNP 66924 66924 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41616 SAMTools SNP 80214 80214 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C146:42 scaffold41616 SAMTools SNP 80304 80304 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold41616 SAMTools SNP 80600 80600 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C172:31 scaffold41616 SAMTools SNP 83322 83322 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41616 SAMTools SNP 85885 85885 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C252:99 scaffold41616 SAMTools SNP 86142 86142 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41616 SAMTools SNP 86947 86947 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C21%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C8.3e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 93329 93329 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold41616 SAMTools SNP 113377 113377 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C15%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.004%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C147:99 scaffold41616 SAMTools SNP 113399 113399 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00075%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 113425 113425 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C34%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 115732 115732 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold41616 SAMTools SNP 115734 115734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C34%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold41616 SAMTools SNP 116104 116104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41616 SAMTools SNP 117054 117054 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41616 SAMTools SNP 117252 117252 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C245:69 scaffold41616 SAMTools SNP 117287 117287 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.014%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C149:99 scaffold41616 SAMTools SNP 117288 117288 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.014%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C124:99 scaffold41616 SAMTools SNP 117435 117435 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 117593 117593 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 117600 117600 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41616 SAMTools SNP 117656 117656 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41616 SAMTools SNP 117902 117902 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C27%2C0:51 scaffold41616 SAMTools SNP 117964 117964 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41616 SAMTools SNP 118016 118016 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold41616 SAMTools SNP 118221 118221 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41616 SAMTools SNP 118250 118250 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41616 SAMTools SNP 118256 118256 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41616 SAMTools SNP 118319 118319 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold41616 SAMTools SNP 119589 119589 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41616 SAMTools SNP 120679 120679 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41616 SAMTools SNP 121153 121153 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41616 SAMTools SNP 121381 121381 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41616 SAMTools SNP 121416 121416 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold41616 SAMTools SNP 121512 121512 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41616 SAMTools SNP 122102 122102 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41616 SAMTools SNP 122110 122110 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00065%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41616 SAMTools SNP 122120 122120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41616 SAMTools SNP 122252 122252 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41616 SAMTools SNP 122859 122859 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41616 SAMTools SNP 122985 122985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41616 SAMTools SNP 123014 123014 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C224:99 scaffold41616 SAMTools SNP 123304 123304 74.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold41628 SAMTools SNP 382 382 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 394 394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 7889 7889 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 8622 8622 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41628 SAMTools SNP 8632 8632 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41628 SAMTools SNP 9586 9586 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41628 SAMTools SNP 9609 9609 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.47%2C0.075%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41628 SAMTools SNP 9622 9622 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41628 SAMTools SNP 14216 14216 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1.8e-16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C33%2C0:63 scaffold41628 SAMTools SNP 14252 14252 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41628 SAMTools SNP 14282 14282 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41628 SAMTools SNP 14958 14958 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 15005 15005 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41628 SAMTools SNP 15195 15195 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41628 SAMTools SNP 19318 19318 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41628 SAMTools SNP 19738 19738 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41628 SAMTools SNP 19763 19763 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41628 SAMTools SNP 33956 33956 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41628 SAMTools SNP 34967 34967 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41628 SAMTools SNP 34992 34992 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D44%3BFQ%3D87.9%3BPV4%3D0.33%2C3.3e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C133:99 scaffold41628 SAMTools SNP 35825 35825 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41628 SAMTools SNP 35842 35842 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.32%2C0.21%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold41628 SAMTools SNP 35854 35854 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold41628 SAMTools SNP 37314 37314 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 38794 38794 70.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C12%2C0:21 scaffold41628 SAMTools SNP 39397 39397 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41628 SAMTools SNP 39425 39425 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 39503 39503 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41628 SAMTools SNP 39518 39518 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold41628 SAMTools SNP 39524 39524 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold41628 SAMTools SNP 40461 40461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.18%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold41628 SAMTools SNP 40491 40491 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold41628 SAMTools SNP 40500 40500 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold41628 SAMTools SNP 44181 44181 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41628 SAMTools SNP 59626 59626 31.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold41628 SAMTools SNP 59634 59634 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.04%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41628 SAMTools SNP 61194 61194 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41628 SAMTools SNP 61217 61217 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C144:99 scaffold41628 SAMTools SNP 61232 61232 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41628 SAMTools SNP 61253 61253 42.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold41628 SAMTools SNP 63330 63330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold41628 SAMTools SNP 64145 64145 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.12%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold41628 SAMTools SNP 64146 64146 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.018%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C203:91 scaffold41628 SAMTools SNP 64170 64170 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41628 SAMTools SNP 66517 66517 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41628 SAMTools SNP 66542 66542 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41628 SAMTools SNP 66551 66551 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold41628 SAMTools SNP 66589 66589 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold41628 SAMTools SNP 66600 66600 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41628 SAMTools SNP 76280 76280 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 77137 77137 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41628 SAMTools SNP 99336 99336 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41628 SAMTools SNP 101858 101858 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold41628 SAMTools SNP 112581 112581 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41628 SAMTools SNP 112598 112598 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41628 SAMTools SNP 121588 121588 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41628 SAMTools SNP 121700 121700 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41628 SAMTools SNP 122192 122192 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41636 SAMTools SNP 10455 10455 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41636 SAMTools SNP 10524 10524 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41636 SAMTools SNP 10552 10552 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41648 SAMTools SNP 10931 10931 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41648 SAMTools SNP 10972 10972 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 14013 14013 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold41650 SAMTools SNP 15779 15779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41650 SAMTools SNP 16904 16904 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C5%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.031%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 17972 17972 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold41650 SAMTools SNP 18015 18015 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold41650 SAMTools SNP 18569 18569 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41650 SAMTools SNP 19505 19505 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C175:99 scaffold41650 SAMTools SNP 19601 19601 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold41650 SAMTools SNP 19657 19657 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41650 SAMTools SNP 20835 20835 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 21308 21308 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41650 SAMTools SNP 22565 22565 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41650 SAMTools SNP 22940 22940 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.023%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold41650 SAMTools SNP 22959 22959 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.38%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold41650 SAMTools SNP 22962 22962 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.033%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41650 SAMTools SNP 22986 22986 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.35%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 24510 24510 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C25%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C1%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 24621 24621 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41650 SAMTools SNP 24841 24841 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold41650 SAMTools SNP 25125 25125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41650 SAMTools SNP 25184 25184 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.36%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41650 SAMTools SNP 25494 25494 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 25685 25685 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 25739 25739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41650 SAMTools SNP 27853 27853 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.46%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C217:43 scaffold41650 SAMTools SNP 29132 29132 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C242:99 scaffold41650 SAMTools SNP 31509 31509 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold41650 SAMTools SNP 38829 38829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41650 SAMTools SNP 39738 39738 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.037%2C0.00071%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold41650 SAMTools SNP 39818 39818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.0041%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 42980 42980 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 42986 42986 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 42991 42991 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41650 SAMTools SNP 47190 47190 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.034%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41650 SAMTools SNP 47852 47852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41650 SAMTools SNP 48588 48588 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold41650 SAMTools SNP 48603 48603 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41650 SAMTools SNP 48642 48642 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold41650 SAMTools SNP 49320 49320 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41650 SAMTools SNP 49326 49326 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41650 SAMTools SNP 49582 49582 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 49810 49810 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C30%2C0:57 scaffold41650 SAMTools SNP 50299 50299 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41650 SAMTools SNP 50620 50620 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C49%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold41650 SAMTools SNP 50781 50781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C31%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold41650 SAMTools SNP 51206 51206 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41650 SAMTools SNP 51368 51368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41650 SAMTools SNP 51874 51874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41650 SAMTools SNP 51943 51943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 52459 52459 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 52468 52468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41650 SAMTools SNP 52477 52477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41650 SAMTools SNP 52785 52785 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41650 SAMTools SNP 52919 52919 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41650 SAMTools SNP 54175 54175 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41650 SAMTools SNP 54310 54310 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold41650 SAMTools SNP 54313 54313 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold41650 SAMTools SNP 54930 54930 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41650 SAMTools SNP 58398 58398 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C20:23 scaffold41650 SAMTools SNP 58428 58428 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41650 SAMTools SNP 58434 58434 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 59150 59150 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 59153 59153 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 59207 59207 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41650 SAMTools SNP 59698 59698 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41650 SAMTools SNP 59725 59725 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 59866 59866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41650 SAMTools SNP 60000 60000 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C8:75 scaffold41650 SAMTools SNP 60207 60207 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C33%2C0:63 scaffold41650 SAMTools SNP 61062 61062 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 61478 61478 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 61526 61526 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 62848 62848 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 63311 63311 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 63446 63446 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41650 SAMTools SNP 64124 64124 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 64172 64172 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41650 SAMTools SNP 64822 64822 76.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold41650 SAMTools SNP 64960 64960 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41650 SAMTools SNP 67151 67151 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C57%2C0:99 scaffold41650 SAMTools SNP 67553 67553 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41650 SAMTools SNP 68185 68185 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.057%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold41650 SAMTools SNP 68275 68275 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C30%2C0:57 scaffold41650 SAMTools SNP 68497 68497 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C250:94 scaffold41650 SAMTools SNP 68719 68719 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41650 SAMTools SNP 68722 68722 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold41650 SAMTools SNP 69487 69487 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 70079 70079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.32%2C1.4e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold41650 SAMTools SNP 70130 70130 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C239:48 scaffold41650 SAMTools SNP 70157 70157 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C33%2C0:63 scaffold41650 SAMTools SNP 70570 70570 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold41650 SAMTools SNP 70585 70585 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold41650 SAMTools SNP 70841 70841 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41650 SAMTools SNP 71947 71947 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold41650 SAMTools SNP 71957 71957 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.049%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41650 SAMTools SNP 73098 73098 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.023%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41650 SAMTools SNP 73128 73128 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41650 SAMTools SNP 73559 73559 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold41650 SAMTools SNP 73600 73600 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41650 SAMTools SNP 74475 74475 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 76544 76544 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C228:99 scaffold41650 SAMTools SNP 76706 76706 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold41650 SAMTools SNP 77204 77204 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.013%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41650 SAMTools SNP 77445 77445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.065%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 77562 77562 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C2.4e-09%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold41650 SAMTools SNP 78042 78042 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.0012%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C249:99 scaffold41650 SAMTools SNP 78075 78075 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold41650 SAMTools SNP 80864 80864 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.29%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold41650 SAMTools SNP 81123 81123 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold41650 SAMTools SNP 82556 82556 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold41650 SAMTools SNP 82890 82890 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold41650 SAMTools SNP 82963 82963 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41650 SAMTools SNP 83004 83004 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold41650 SAMTools SNP 84111 84111 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.071%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C160:99 scaffold41650 SAMTools SNP 84746 84746 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.35%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41650 SAMTools SNP 84982 84982 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.28%2C8.4e-07%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold41650 SAMTools SNP 86012 86012 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C160:99 scaffold41650 SAMTools SNP 86357 86357 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.006%2C5.9e-07%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold41650 SAMTools SNP 86640 86640 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.044%2C0.029%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C243:66 scaffold41650 SAMTools SNP 86673 86673 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D0.33%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C65:68 scaffold41650 SAMTools SNP 87083 87083 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41650 SAMTools SNP 90347 90347 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C48%2C0:93 scaffold41650 SAMTools SNP 90878 90878 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C76%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 91101 91101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41650 SAMTools SNP 91330 91330 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C22%2C38%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 91365 91365 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41650 SAMTools SNP 92626 92626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C50%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold41650 SAMTools SNP 93051 93051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41650 SAMTools SNP 93078 93078 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41650 SAMTools SNP 93096 93096 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.077%2C0.19%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold41650 SAMTools SNP 93120 93120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C9%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41650 SAMTools SNP 93514 93514 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.67%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41650 SAMTools SNP 93551 93551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 93611 93611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C36%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold41650 SAMTools SNP 93615 93615 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C5%2C7%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.47%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41650 SAMTools SNP 94851 94851 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 96820 96820 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41650 SAMTools SNP 96847 96847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41650 SAMTools SNP 96853 96853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41650 SAMTools SNP 97514 97514 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41650 SAMTools SNP 98762 98762 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41650 SAMTools SNP 99608 99608 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 105153 105153 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold41650 SAMTools SNP 105240 105240 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41650 SAMTools SNP 105436 105436 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41650 SAMTools SNP 105481 105481 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 105562 105562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41650 SAMTools SNP 105580 105580 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41650 SAMTools SNP 107953 107953 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41650 SAMTools SNP 107968 107968 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41650 SAMTools SNP 113052 113052 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 113775 113775 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41650 SAMTools SNP 114905 114905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 114917 114917 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41650 SAMTools SNP 114933 114933 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41650 SAMTools SNP 115092 115092 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41650 SAMTools SNP 115805 115805 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41650 SAMTools SNP 115829 115829 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41650 SAMTools SNP 116048 116048 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold41650 SAMTools SNP 116569 116569 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41650 SAMTools SNP 116766 116766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41650 SAMTools SNP 116932 116932 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.25%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41650 SAMTools SNP 117202 117202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold41650 SAMTools SNP 117476 117476 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.55%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold41650 SAMTools SNP 117623 117623 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41650 SAMTools SNP 117734 117734 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0097%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C244:44 scaffold41650 SAMTools SNP 122617 122617 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold41650 SAMTools SNP 122959 122959 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.16%2C0.087%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold41650 SAMTools SNP 123524 123524 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41652 SAMTools SNP 3877 3877 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41652 SAMTools SNP 3881 3881 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41652 SAMTools SNP 10008 10008 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41652 SAMTools SNP 10062 10062 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41652 SAMTools SNP 10508 10508 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41652 SAMTools SNP 10831 10831 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41652 SAMTools SNP 10843 10843 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold41652 SAMTools SNP 11546 11546 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C223:99 scaffold41652 SAMTools SNP 12107 12107 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41652 SAMTools SNP 12299 12299 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold41652 SAMTools SNP 12488 12488 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41652 SAMTools SNP 13482 13482 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold41652 SAMTools SNP 13530 13530 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold41652 SAMTools SNP 13536 13536 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold41652 SAMTools SNP 17769 17769 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41652 SAMTools SNP 18748 18748 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41652 SAMTools SNP 18783 18783 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C8%2C15%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.018%2C1.4e-27%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41652 SAMTools SNP 18867 18867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41652 SAMTools SNP 18927 18927 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C230:99 scaffold41652 SAMTools SNP 18930 18930 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C19%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C155:99 scaffold41652 SAMTools SNP 19239 19239 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41652 SAMTools SNP 21625 21625 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41652 SAMTools SNP 21631 21631 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41652 SAMTools SNP 22419 22419 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C184:95 scaffold41652 SAMTools SNP 22460 22460 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41652 SAMTools SNP 22474 22474 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41652 SAMTools SNP 22524 22524 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold41652 SAMTools SNP 28471 28471 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C18%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold41652 SAMTools SNP 29778 29778 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C26%2C127%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 30576 30576 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 30806 30806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C4%2C60%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 32093 32093 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C14%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold41652 SAMTools SNP 32102 32102 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C15%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold41652 SAMTools SNP 32431 32431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 32958 32958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 33162 33162 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C8%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.75%2C1.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold41652 SAMTools SNP 33210 33210 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C34%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold41652 SAMTools SNP 33363 33363 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C255%2C0:99 scaffold41652 SAMTools SNP 33483 33483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C51%2C5%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-06%2C2.2e-78%2C1%2C4.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 33678 33678 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 33816 33816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C7%2C19%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 33879 33879 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 34270 34270 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C16%2C19%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.65%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold41652 SAMTools SNP 34543 34543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 34546 34546 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C12%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0014%2C5.5e-09%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold41652 SAMTools SNP 34591 34591 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C21%2C114%2C21%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.74%2C3.3e-163%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold41652 SAMTools SNP 34837 34837 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C15%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold41652 SAMTools SNP 35383 35383 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 35729 35729 224 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold41652 SAMTools SNP 35798 35798 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold41652 SAMTools SNP 36183 36183 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C33%2C0:63 scaffold41652 SAMTools SNP 36585 36585 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C14%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C2.7e-33%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 36627 36627 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C5%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold41652 SAMTools SNP 37349 37349 73.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold41652 SAMTools SNP 37403 37403 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C149:99 scaffold41652 SAMTools SNP 37564 37564 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41652 SAMTools SNP 37834 37834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C340%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 37960 37960 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C35%2C59%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 38300 38300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D716%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C553%2C32%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41652 SAMTools SNP 38387 38387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C340%2C34%2C242%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C7.3e-241%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 38752 38752 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C14%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C5.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold41652 SAMTools SNP 38893 38893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C7%2C86%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 39490 39490 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold41652 SAMTools SNP 39667 39667 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C132%2C96%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 40142 40142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41652 SAMTools SNP 40740 40740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C52%2C30%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C4.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 40812 40812 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C18%2C2%2C14%3BMQ%3D50%3BFQ%3D170%3BPV4%3D6.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold41652 SAMTools SNP 41351 41351 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C9%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 41366 41366 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C49%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 41588 41588 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C23%2C29%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.55%2C1.5e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold41652 SAMTools SNP 41915 41915 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 44864 44864 72.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D660%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold41652 SAMTools SNP 46337 46337 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C23%2C1%2C25%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1.2e-15%2C0.096%2C1%2C9.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41652 SAMTools SNP 47041 47041 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C82%2C39%2C16%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.012%2C6.8e-38%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold41652 SAMTools SNP 47218 47218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C75%2C99%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-18%2C5.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 48270 48270 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C38%2C69%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1.9e-16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 48639 48639 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C39%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.77%2C3.4e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold41652 SAMTools SNP 48780 48780 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C57%2C0:99 scaffold41652 SAMTools SNP 48831 48831 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C85%2C27%2C54%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.096%2C4.9e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41652 SAMTools SNP 55365 55365 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold41652 SAMTools SNP 55802 55802 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C199:99 scaffold41652 SAMTools SNP 55823 55823 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C57:60 scaffold41652 SAMTools SNP 55838 55838 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C0.02%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C152:99 scaffold41652 SAMTools SNP 56028 56028 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold41652 SAMTools SNP 56243 56243 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D20%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C74:50 scaffold41652 SAMTools SNP 56270 56270 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.6e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C54:57 scaffold41652 SAMTools SNP 56315 56315 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C75%2C0:99 scaffold41652 SAMTools SNP 56387 56387 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold41652 SAMTools SNP 56402 56402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41652 SAMTools SNP 59769 59769 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C15%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C105:99 scaffold41652 SAMTools SNP 62021 62021 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41652 SAMTools SNP 63964 63964 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C17%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold41652 SAMTools SNP 65489 65489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C68%2C2%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 65531 65531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41652 SAMTools SNP 67282 67282 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41652 SAMTools SNP 69547 69547 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C19%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0003%2C1.4e-07%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41652 SAMTools SNP 69576 69576 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C48%2C0:93 scaffold41652 SAMTools SNP 70528 70528 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C39%2C0:75 scaffold41652 SAMTools SNP 70986 70986 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C42%2C0:81 scaffold41652 SAMTools SNP 86948 86948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold41652 SAMTools SNP 88472 88472 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C218:99 scaffold41652 SAMTools SNP 88865 88865 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.64%2C0.27%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold41652 SAMTools SNP 88901 88901 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C41%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.52%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold41652 SAMTools SNP 89513 89513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 89843 89843 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.62%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41652 SAMTools SNP 89882 89882 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C12%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold41652 SAMTools SNP 91222 91222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 92553 92553 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.25%2C7.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41652 SAMTools SNP 92577 92577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1.3e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 92639 92639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C12%2C148%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 95120 95120 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1.7e-05%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C195:99 scaffold41652 SAMTools SNP 100906 100906 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C25%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 101019 101019 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C4%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0001%2C1%2C1%2C9.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C218:99 scaffold41652 SAMTools SNP 108392 108392 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.0051%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold41652 SAMTools SNP 108443 108443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41652 SAMTools SNP 109218 109218 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41652 SAMTools SNP 109337 109337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41652 SAMTools SNP 111692 111692 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D28.8%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C56:59 scaffold41652 SAMTools SNP 111779 111779 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.31%2C1.7e-29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41652 SAMTools SNP 112541 112541 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C0:57 scaffold41652 SAMTools SNP 114163 114163 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold41652 SAMTools SNP 117139 117139 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C14%2C37%2C11%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.82%2C4.2e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41652 SAMTools SNP 117217 117217 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C61%2C5%2C52%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1.5e-06%2C1e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold41652 SAMTools SNP 117570 117570 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C46%2C12%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D8.4e-05%2C0.05%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold41652 SAMTools SNP 117774 117774 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C47%2C24%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41656 SAMTools SNP 1828 1828 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D244%2C3%2C301%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-18%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41656 SAMTools SNP 1982 1982 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41656 SAMTools SNP 4730 4730 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1136%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D371%2C469%2C226%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-26%2C3.4e-10%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41656 SAMTools SNP 4731 4731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1131%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D221%2C57%2C371%2C469%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1.2e-25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold41656 SAMTools SNP 4770 4770 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C93%2C63%2C377%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-07%2C1%2C1%2C2.1e-72;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41656 SAMTools SNP 4779 4779 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C77%2C0%2C20%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.0067%2C0.16%2C1%2C2.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold41656 SAMTools SNP 5772 5772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C607%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41656 SAMTools SNP 6268 6268 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C87%2C0%2C13%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold41656 SAMTools SNP 26260 26260 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C95:54 scaffold41656 SAMTools SNP 27228 27228 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C68%2C0%2C66%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.5%2C7.9e-97%2C0.072%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold41656 SAMTools SNP 29554 29554 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41656 SAMTools SNP 29614 29614 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41656 SAMTools SNP 31215 31215 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41656 SAMTools SNP 31227 31227 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41656 SAMTools SNP 31249 31249 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41656 SAMTools SNP 33511 33511 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold41656 SAMTools SNP 33532 33532 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1.1e-05%2C0.27%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C82:39 scaffold41656 SAMTools SNP 33731 33731 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41656 SAMTools SNP 34139 34139 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41656 SAMTools SNP 50049 50049 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41656 SAMTools SNP 51081 51081 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41656 SAMTools SNP 51117 51117 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41656 SAMTools SNP 99017 99017 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C7%3BMQ%3D46%3BFQ%3D65%3BPV4%3D0.062%2C0.41%2C0.0087%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41656 SAMTools SNP 99045 99045 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C12%3BMQ%3D45%3BFQ%3D84%3BPV4%3D0.52%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold41656 SAMTools SNP 99361 99361 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D0.47%2C0.48%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41656 SAMTools SNP 99815 99815 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.46%2C9.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold41656 SAMTools SNP 99940 99940 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold41656 SAMTools SNP 100483 100483 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.1e-12%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41656 SAMTools SNP 100489 100489 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D26.4%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C62:56 scaffold41656 SAMTools SNP 104113 104113 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41656 SAMTools SNP 118204 118204 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41656 SAMTools SNP 118236 118236 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41660 SAMTools SNP 113 113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41660 SAMTools SNP 122 122 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.14%2C0.49%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41660 SAMTools SNP 272 272 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold41660 SAMTools SNP 619 619 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41660 SAMTools SNP 879 879 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C3%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold41660 SAMTools SNP 1106 1106 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41660 SAMTools SNP 1163 1163 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C9.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold41660 SAMTools SNP 1265 1265 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold41660 SAMTools SNP 3049 3049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41660 SAMTools SNP 7310 7310 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold41660 SAMTools SNP 7319 7319 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41660 SAMTools SNP 32835 32835 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41660 SAMTools SNP 37814 37814 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41660 SAMTools SNP 64293 64293 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41660 SAMTools SNP 65270 65270 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41660 SAMTools SNP 65330 65330 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41660 SAMTools SNP 65612 65612 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41660 SAMTools SNP 65633 65633 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41660 SAMTools SNP 71188 71188 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41660 SAMTools SNP 71459 71459 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41660 SAMTools SNP 71522 71522 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C0.014%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C107:88 scaffold41660 SAMTools SNP 71569 71569 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41660 SAMTools SNP 71852 71852 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41660 SAMTools SNP 71884 71884 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41660 SAMTools SNP 78912 78912 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41660 SAMTools SNP 84844 84844 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C66:42 scaffold41660 SAMTools SNP 85424 85424 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41660 SAMTools SNP 87218 87218 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.019%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41660 SAMTools SNP 103584 103584 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41660 SAMTools SNP 104340 104340 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41660 SAMTools SNP 105649 105649 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C242:99 scaffold41660 SAMTools SNP 105688 105688 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C21%2C9%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.22%2C3e-22%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold41660 SAMTools SNP 105752 105752 220 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C36%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C214:99 scaffold41660 SAMTools SNP 105763 105763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C9%2C70%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.2%2C0.031%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold41660 SAMTools SNP 106329 106329 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41660 SAMTools SNP 106359 106359 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41660 SAMTools SNP 107670 107670 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.24%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold41660 SAMTools SNP 108144 108144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41660 SAMTools SNP 108168 108168 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41660 SAMTools SNP 108212 108212 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold41660 SAMTools SNP 121369 121369 13.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C21%2C0:30 scaffold41664 SAMTools SNP 44 44 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41664 SAMTools SNP 62 62 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41664 SAMTools SNP 135 135 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41664 SAMTools SNP 40957 40957 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.43%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C97:50 scaffold41664 SAMTools SNP 74383 74383 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41664 SAMTools SNP 74655 74655 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold41664 SAMTools SNP 75054 75054 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold41664 SAMTools SNP 75283 75283 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C129:99 scaffold41664 SAMTools SNP 75316 75316 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C175:99 scaffold41664 SAMTools SNP 77882 77882 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C126:99 scaffold41664 SAMTools SNP 78368 78368 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold41664 SAMTools SNP 78377 78377 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41664 SAMTools SNP 79563 79563 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41664 SAMTools SNP 79569 79569 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41664 SAMTools SNP 79610 79610 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41664 SAMTools SNP 81991 81991 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41664 SAMTools SNP 83571 83571 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41664 SAMTools SNP 104983 104983 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41664 SAMTools SNP 110462 110462 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41666 SAMTools SNP 50 50 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 157 157 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 10735 10735 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold41666 SAMTools SNP 13363 13363 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41666 SAMTools SNP 13482 13482 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41666 SAMTools SNP 14366 14366 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41666 SAMTools SNP 37042 37042 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C23%2C0%2C10%3BMQ%3D48%3BFQ%3D61%3BPV4%3D0.00088%2C1%2C0.058%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41666 SAMTools SNP 37079 37079 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C70%2C20%2C106%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.29%2C0.055%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 41406 41406 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold41666 SAMTools SNP 41495 41495 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C5%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.49%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold41666 SAMTools SNP 48363 48363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C170%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41666 SAMTools SNP 48387 48387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41666 SAMTools SNP 54010 54010 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C69%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 54022 54022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C71%2C14%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.022%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 54642 54642 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.47%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 60410 60410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C178%2C69%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41666 SAMTools SNP 60462 60462 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 60848 60848 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold41666 SAMTools SNP 67153 67153 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold41666 SAMTools SNP 67165 67165 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41666 SAMTools SNP 67571 67571 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold41666 SAMTools SNP 70486 70486 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold41666 SAMTools SNP 72645 72645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C160%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41666 SAMTools SNP 79296 79296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C48%2C52%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C1e-14%2C0.13%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 83501 83501 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.062%2C0.022%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold41666 SAMTools SNP 85733 85733 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C66%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold41666 SAMTools SNP 85880 85880 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 85907 85907 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41666 SAMTools SNP 86109 86109 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 86120 86120 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 89673 89673 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C9%2C0%3BMQ%3D46%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41666 SAMTools SNP 89705 89705 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D44%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.33%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41666 SAMTools SNP 89719 89719 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C3%2C3%3BMQ%3D48%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41666 SAMTools SNP 91058 91058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 91690 91690 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 92135 92135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41666 SAMTools SNP 93965 93965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41666 SAMTools SNP 95110 95110 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C1%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41666 SAMTools SNP 95139 95139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41666 SAMTools SNP 95796 95796 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C24%2C0:45 scaffold41666 SAMTools SNP 96276 96276 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C7%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.45%2C3.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold41666 SAMTools SNP 97248 97248 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41666 SAMTools SNP 98121 98121 12.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold41666 SAMTools SNP 98240 98240 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.5%2C0.0049%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C208:43 scaffold41666 SAMTools SNP 109675 109675 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41666 SAMTools SNP 109717 109717 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41666 SAMTools SNP 110481 110481 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C8.8e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41666 SAMTools SNP 110647 110647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41666 SAMTools SNP 111056 111056 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41666 SAMTools SNP 111085 111085 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41666 SAMTools SNP 111553 111553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 111901 111901 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 112055 112055 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41666 SAMTools SNP 112187 112187 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41666 SAMTools SNP 114096 114096 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41666 SAMTools SNP 114137 114137 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41666 SAMTools SNP 114890 114890 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41666 SAMTools SNP 118772 118772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41666 SAMTools SNP 118781 118781 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C6:9 scaffold41684 SAMTools SNP 4554 4554 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 4573 4573 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 4690 4690 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 4707 4707 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 33917 33917 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41684 SAMTools SNP 34912 34912 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41684 SAMTools SNP 35584 35584 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold41684 SAMTools SNP 35604 35604 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41684 SAMTools SNP 45080 45080 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41684 SAMTools SNP 45362 45362 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C21%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.31%2C7.8e-06%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold41684 SAMTools SNP 49646 49646 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C245:99 scaffold41684 SAMTools SNP 49674 49674 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 58917 58917 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C178%2C0:99 scaffold41684 SAMTools SNP 84198 84198 45.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold41684 SAMTools SNP 84645 84645 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41684 SAMTools SNP 84657 84657 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41684 SAMTools SNP 85750 85750 32.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold41684 SAMTools SNP 87940 87940 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00021%2C4.2e-31%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C155:47 scaffold41684 SAMTools SNP 88638 88638 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41684 SAMTools SNP 91657 91657 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold417 SAMTools SNP 31212 31212 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold417 SAMTools SNP 33166 33166 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41700 SAMTools SNP 9834 9834 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold41700 SAMTools SNP 9909 9909 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold41700 SAMTools SNP 11678 11678 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41700 SAMTools SNP 19400 19400 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41700 SAMTools SNP 19655 19655 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41700 SAMTools SNP 20002 20002 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41700 SAMTools SNP 34936 34936 74.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C12%2C0:21 scaffold41700 SAMTools SNP 47425 47425 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold41700 SAMTools SNP 47436 47436 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41722 SAMTools SNP 1101 1101 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C69:72 scaffold41722 SAMTools SNP 2410 2410 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41722 SAMTools SNP 2416 2416 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41722 SAMTools SNP 5532 5532 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41722 SAMTools SNP 28452 28452 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41722 SAMTools SNP 30108 30108 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 30135 30135 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 30185 30185 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 30189 30189 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 30657 30657 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41722 SAMTools SNP 31232 31232 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41722 SAMTools SNP 31576 31576 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41722 SAMTools SNP 33747 33747 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 33750 33750 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 33807 33807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 33813 33813 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 34194 34194 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold41722 SAMTools SNP 34212 34212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold41722 SAMTools SNP 34576 34576 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold41722 SAMTools SNP 35400 35400 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.31%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold41722 SAMTools SNP 35481 35481 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.044%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C174:33 scaffold41722 SAMTools SNP 36161 36161 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold41722 SAMTools SNP 38730 38730 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold41722 SAMTools SNP 38760 38760 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold41722 SAMTools SNP 38943 38943 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.074%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold41722 SAMTools SNP 39163 39163 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C137:33 scaffold41722 SAMTools SNP 39417 39417 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold41722 SAMTools SNP 39481 39481 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41722 SAMTools SNP 39502 39502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41722 SAMTools SNP 39992 39992 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.00044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C26:29 scaffold41722 SAMTools SNP 40225 40225 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.03%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold41722 SAMTools SNP 40615 40615 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41722 SAMTools SNP 41339 41339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41722 SAMTools SNP 42723 42723 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.012%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C95:59 scaffold41722 SAMTools SNP 43259 43259 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold41722 SAMTools SNP 43728 43728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41722 SAMTools SNP 45352 45352 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C110:41 scaffold41722 SAMTools SNP 50431 50431 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D26%2C23%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.064%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41722 SAMTools SNP 50449 50449 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41722 SAMTools SNP 50772 50772 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41722 SAMTools SNP 50856 50856 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41722 SAMTools SNP 50883 50883 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41722 SAMTools SNP 51429 51429 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.54%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold41722 SAMTools SNP 51472 51472 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C20%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold41722 SAMTools SNP 51831 51831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C44%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold41722 SAMTools SNP 52054 52054 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold41722 SAMTools SNP 52473 52473 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C11%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold41722 SAMTools SNP 52476 52476 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C1%2C1%2C8.4e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold41722 SAMTools SNP 52521 52521 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41722 SAMTools SNP 52557 52557 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41722 SAMTools SNP 52578 52578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41722 SAMTools SNP 52847 52847 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41722 SAMTools SNP 53192 53192 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41722 SAMTools SNP 54265 54265 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41722 SAMTools SNP 54355 54355 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C27%2C0:51 scaffold41722 SAMTools SNP 69598 69598 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold41722 SAMTools SNP 69984 69984 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold41722 SAMTools SNP 69994 69994 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold41722 SAMTools SNP 69999 69999 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold41722 SAMTools SNP 82849 82849 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold41722 SAMTools SNP 82870 82870 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold41722 SAMTools SNP 82952 82952 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.52%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41722 SAMTools SNP 83390 83390 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold41722 SAMTools SNP 83744 83744 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41722 SAMTools SNP 83756 83756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41722 SAMTools SNP 84026 84026 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41722 SAMTools SNP 84050 84050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41722 SAMTools SNP 97197 97197 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 97625 97625 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 98700 98700 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold41722 SAMTools SNP 99536 99536 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold41722 SAMTools SNP 99610 99610 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold41722 SAMTools SNP 100894 100894 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41722 SAMTools SNP 100914 100914 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41722 SAMTools SNP 100947 100947 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41722 SAMTools SNP 101525 101525 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41722 SAMTools SNP 101540 101540 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41722 SAMTools SNP 103711 103711 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41722 SAMTools SNP 104078 104078 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41722 SAMTools SNP 104135 104135 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41722 SAMTools SNP 104823 104823 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.41%2C0.041%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold41722 SAMTools SNP 104869 104869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41722 SAMTools SNP 105328 105328 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41722 SAMTools SNP 105331 105331 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41722 SAMTools SNP 106217 106217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C0.044%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41722 SAMTools SNP 106301 106301 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C18%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41722 SAMTools SNP 112616 112616 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 112625 112625 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 117922 117922 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41722 SAMTools SNP 118759 118759 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold41722 SAMTools SNP 118942 118942 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0026%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold41722 SAMTools SNP 119081 119081 35.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold41722 SAMTools SNP 119497 119497 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C8%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0021%2C7.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold41722 SAMTools SNP 119506 119506 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.0043%2C4.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41722 SAMTools SNP 119941 119941 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C5.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C85:37 scaffold41722 SAMTools SNP 120109 120109 31.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold41722 SAMTools SNP 120373 120373 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold41722 SAMTools SNP 120406 120406 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C2%2C20%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.6%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold41722 SAMTools SNP 121947 121947 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C39%2C0:75 scaffold41722 SAMTools SNP 122133 122133 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C99%2C0:99 scaffold41722 SAMTools SNP 122594 122594 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C255%2C0:99 scaffold41730 SAMTools SNP 1188 1188 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41730 SAMTools SNP 2336 2336 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C50:53 scaffold41730 SAMTools SNP 2363 2363 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C27%2C0:51 scaffold41730 SAMTools SNP 2378 2378 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41730 SAMTools SNP 2459 2459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41730 SAMTools SNP 2893 2893 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41730 SAMTools SNP 2992 2992 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold41730 SAMTools SNP 3228 3228 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41730 SAMTools SNP 3282 3282 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.012%2C5.8e-08%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41730 SAMTools SNP 4546 4546 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C229:99 scaffold41730 SAMTools SNP 4567 4567 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.4e-05%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C218:72 scaffold41730 SAMTools SNP 5439 5439 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41730 SAMTools SNP 5502 5502 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 5523 5523 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41730 SAMTools SNP 5760 5760 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41730 SAMTools SNP 6398 6398 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 6413 6413 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 6473 6473 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41730 SAMTools SNP 6479 6479 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41730 SAMTools SNP 6506 6506 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41730 SAMTools SNP 7788 7788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41730 SAMTools SNP 7815 7815 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold41730 SAMTools SNP 7914 7914 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 8523 8523 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C77:61 scaffold41730 SAMTools SNP 8667 8667 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41730 SAMTools SNP 9296 9296 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold41730 SAMTools SNP 9413 9413 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold41730 SAMTools SNP 12175 12175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41730 SAMTools SNP 12189 12189 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41730 SAMTools SNP 13782 13782 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold41730 SAMTools SNP 13823 13823 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41730 SAMTools SNP 13840 13840 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 14740 14740 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 15076 15076 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C125:99 scaffold41730 SAMTools SNP 15574 15574 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold41730 SAMTools SNP 15682 15682 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41730 SAMTools SNP 16313 16313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.19%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold41730 SAMTools SNP 16319 16319 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold41730 SAMTools SNP 16328 16328 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41730 SAMTools SNP 23529 23529 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold41730 SAMTools SNP 24664 24664 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41730 SAMTools SNP 24670 24670 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 25112 25112 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41730 SAMTools SNP 25169 25169 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41730 SAMTools SNP 25603 25603 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 25620 25620 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41730 SAMTools SNP 25627 25627 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41730 SAMTools SNP 25629 25629 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41730 SAMTools SNP 25647 25647 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41730 SAMTools SNP 26238 26238 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41730 SAMTools SNP 27468 27468 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41730 SAMTools SNP 27537 27537 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 29895 29895 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 29922 29922 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 30411 30411 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold41730 SAMTools SNP 30473 30473 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 36201 36201 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold41730 SAMTools SNP 36225 36225 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold41730 SAMTools SNP 36426 36426 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C246:99 scaffold41730 SAMTools SNP 37353 37353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41730 SAMTools SNP 38442 38442 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41730 SAMTools SNP 48806 48806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C4%3BMQ%3D47%3BFQ%3D199%3BPV4%3D0.026%2C1%2C0.21%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold41730 SAMTools SNP 49075 49075 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.54%2C0.25%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold41730 SAMTools SNP 49081 49081 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 51164 51164 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41730 SAMTools SNP 51183 51183 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41730 SAMTools SNP 51221 51221 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41730 SAMTools SNP 51872 51872 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C66%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold41730 SAMTools SNP 52181 52181 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold41730 SAMTools SNP 54606 54606 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.14%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold41730 SAMTools SNP 54723 54723 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41730 SAMTools SNP 55006 55006 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41730 SAMTools SNP 55886 55886 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 55889 55889 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C24%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 55922 55922 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C33%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C7.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 55940 55940 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 56115 56115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C33%2C30%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 56190 56190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C38%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41730 SAMTools SNP 56310 56310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C57%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold41730 SAMTools SNP 56532 56532 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C19%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold41730 SAMTools SNP 58637 58637 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold41730 SAMTools SNP 60199 60199 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C25%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.34%2C3.3e-38%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C244:68 scaffold41730 SAMTools SNP 60510 60510 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.061%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C118:68 scaffold41730 SAMTools SNP 60529 60529 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D55.9%3BPV4%3D0.27%2C6e-15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C83:86 scaffold41730 SAMTools SNP 60631 60631 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.055%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C93:96 scaffold41730 SAMTools SNP 60691 60691 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C9.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C87:90 scaffold41730 SAMTools SNP 60982 60982 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C77:78 scaffold41730 SAMTools SNP 65725 65725 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 66590 66590 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41730 SAMTools SNP 67656 67656 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41730 SAMTools SNP 67675 67675 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold41730 SAMTools SNP 69111 69111 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C49%2C29%2C28%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.01%2C3e-73%2C0.14%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold41730 SAMTools SNP 69312 69312 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D636%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D255%2C95%2C244%2C36%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1.2e-05%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold41730 SAMTools SNP 69845 69845 35.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold41730 SAMTools SNP 77330 77330 38.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold41730 SAMTools SNP 77509 77509 25.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold41730 SAMTools SNP 91535 91535 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8.1e-09%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41730 SAMTools SNP 92340 92340 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold41730 SAMTools SNP 92972 92972 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.43%2C1.4e-05%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C121:54 scaffold41730 SAMTools SNP 93788 93788 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7756%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1496%2C2975%2C502%2C1258%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 110708 110708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C4%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.012%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41730 SAMTools SNP 113683 113683 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41730 SAMTools SNP 116177 116177 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold41730 SAMTools SNP 117657 117657 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41730 SAMTools SNP 118943 118943 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41730 SAMTools SNP 118988 118988 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold41730 SAMTools SNP 126736 126736 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold41732 SAMTools SNP 567 567 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41732 SAMTools SNP 838 838 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.44%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C141:36 scaffold41732 SAMTools SNP 4760 4760 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41732 SAMTools SNP 4769 4769 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C218:99 scaffold41732 SAMTools SNP 7598 7598 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C206:95 scaffold41732 SAMTools SNP 7670 7670 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold41732 SAMTools SNP 8282 8282 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41732 SAMTools SNP 8577 8577 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41732 SAMTools SNP 10735 10735 20.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold41732 SAMTools SNP 10841 10841 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41732 SAMTools SNP 11062 11062 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41732 SAMTools SNP 12541 12541 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 12785 12785 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold41732 SAMTools SNP 12922 12922 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.017%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41732 SAMTools SNP 15482 15482 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41732 SAMTools SNP 15654 15654 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41732 SAMTools SNP 15681 15681 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41732 SAMTools SNP 16194 16194 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41732 SAMTools SNP 16210 16210 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold41732 SAMTools SNP 17624 17624 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold41732 SAMTools SNP 17881 17881 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41732 SAMTools SNP 18086 18086 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C156:56 scaffold41732 SAMTools SNP 18314 18314 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00032%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C231:39 scaffold41732 SAMTools SNP 18588 18588 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.062%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C223:34 scaffold41732 SAMTools SNP 18590 18590 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.44%2C0.0017%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C191:99 scaffold41732 SAMTools SNP 19322 19322 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold41732 SAMTools SNP 21972 21972 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41732 SAMTools SNP 22205 22205 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold41732 SAMTools SNP 23796 23796 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold41732 SAMTools SNP 23802 23802 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold41732 SAMTools SNP 25092 25092 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold41732 SAMTools SNP 25171 25171 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41732 SAMTools SNP 26947 26947 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41732 SAMTools SNP 26966 26966 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 30977 30977 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C219:99 scaffold41732 SAMTools SNP 31028 31028 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.28%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold41732 SAMTools SNP 31037 31037 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C7%2C86%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41732 SAMTools SNP 31314 31314 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C47%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.13%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C241:99 scaffold41732 SAMTools SNP 31835 31835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C4%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41732 SAMTools SNP 31874 31874 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.083%2C0.027%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41732 SAMTools SNP 32125 32125 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.45%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41732 SAMTools SNP 33466 33466 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C1%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold41732 SAMTools SNP 34328 34328 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00023%2C2.3e-07%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C221:48 scaffold41732 SAMTools SNP 34511 34511 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C23%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.019%2C1%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41732 SAMTools SNP 35365 35365 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C47%2C3%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41732 SAMTools SNP 35449 35449 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C13%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold41732 SAMTools SNP 36402 36402 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C11%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.00012%2C1.4e-13%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41732 SAMTools SNP 37269 37269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41732 SAMTools SNP 37273 37273 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41732 SAMTools SNP 37566 37566 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold41732 SAMTools SNP 37662 37662 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold41732 SAMTools SNP 38103 38103 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.23%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C185:98 scaffold41732 SAMTools SNP 38480 38480 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41732 SAMTools SNP 38486 38486 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41732 SAMTools SNP 38997 38997 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C18%2C56%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41732 SAMTools SNP 39778 39778 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C95%2C0%2C17%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C253:70 scaffold41732 SAMTools SNP 44488 44488 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold41732 SAMTools SNP 45636 45636 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C63%2C0:99 scaffold41732 SAMTools SNP 45783 45783 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold41732 SAMTools SNP 46500 46500 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41732 SAMTools SNP 47211 47211 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41732 SAMTools SNP 47233 47233 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41732 SAMTools SNP 48805 48805 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41732 SAMTools SNP 48856 48856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41732 SAMTools SNP 49964 49964 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.13%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold41732 SAMTools SNP 50088 50088 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold41732 SAMTools SNP 50580 50580 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C172:63 scaffold41732 SAMTools SNP 50974 50974 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold41732 SAMTools SNP 51041 51041 26.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold41732 SAMTools SNP 51488 51488 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41732 SAMTools SNP 52716 52716 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41732 SAMTools SNP 55178 55178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41732 SAMTools SNP 55584 55584 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold41732 SAMTools SNP 55903 55903 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 55909 55909 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 68602 68602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 69096 69096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 77342 77342 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold41732 SAMTools SNP 77349 77349 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41732 SAMTools SNP 78102 78102 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold41732 SAMTools SNP 80470 80470 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41732 SAMTools SNP 88041 88041 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41732 SAMTools SNP 88054 88054 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41732 SAMTools SNP 88061 88061 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41732 SAMTools SNP 88071 88071 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold41732 SAMTools SNP 89347 89347 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C17:20 scaffold41732 SAMTools SNP 89910 89910 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41732 SAMTools SNP 89964 89964 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41732 SAMTools SNP 90162 90162 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41732 SAMTools SNP 90411 90411 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold41732 SAMTools SNP 90435 90435 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold41732 SAMTools SNP 90819 90819 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41732 SAMTools SNP 91222 91222 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41732 SAMTools SNP 92295 92295 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C176:99 scaffold41732 SAMTools SNP 93026 93026 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C148:99 scaffold41732 SAMTools SNP 93766 93766 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41732 SAMTools SNP 93776 93776 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41732 SAMTools SNP 93796 93796 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41732 SAMTools SNP 93801 93801 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41732 SAMTools SNP 93811 93811 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold41732 SAMTools SNP 93820 93820 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41732 SAMTools SNP 93868 93868 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C110:40 scaffold41732 SAMTools SNP 94074 94074 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41732 SAMTools SNP 94190 94190 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41732 SAMTools SNP 95396 95396 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41732 SAMTools SNP 95410 95410 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41732 SAMTools SNP 96611 96611 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C166:99 scaffold41732 SAMTools SNP 102376 102376 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41732 SAMTools SNP 109787 109787 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41732 SAMTools SNP 111317 111317 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0065%2C5.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C135:96 scaffold41732 SAMTools SNP 111448 111448 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C255%2C0:99 scaffold41732 SAMTools SNP 111670 111670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C38%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold41732 SAMTools SNP 111944 111944 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold41732 SAMTools SNP 112272 112272 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold41732 SAMTools SNP 112930 112930 204 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C20%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.15%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C62:65 scaffold41732 SAMTools SNP 112933 112933 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold41740 SAMTools SNP 636 636 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41740 SAMTools SNP 701 701 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41740 SAMTools SNP 1027 1027 16.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold41740 SAMTools SNP 1399 1399 41.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold41740 SAMTools SNP 6299 6299 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41740 SAMTools SNP 6300 6300 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41740 SAMTools SNP 6520 6520 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41740 SAMTools SNP 8775 8775 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold41740 SAMTools SNP 21457 21457 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C9%2C0:16 scaffold41740 SAMTools SNP 21565 21565 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41740 SAMTools SNP 21776 21776 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41740 SAMTools SNP 22835 22835 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41740 SAMTools SNP 60143 60143 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41740 SAMTools SNP 81667 81667 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C11%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.034%2C2.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold41740 SAMTools SNP 81784 81784 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.34%2C1.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41740 SAMTools SNP 81863 81863 22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C97:55 scaffold41740 SAMTools SNP 82025 82025 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41740 SAMTools SNP 84278 84278 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41740 SAMTools SNP 84284 84284 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41740 SAMTools SNP 84339 84339 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C69%2C0:99 scaffold41740 SAMTools SNP 87392 87392 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41740 SAMTools SNP 88183 88183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41740 SAMTools SNP 88212 88212 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41740 SAMTools SNP 89875 89875 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41740 SAMTools SNP 90115 90115 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C60%2C0:99 scaffold41740 SAMTools SNP 90136 90136 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C45%2C0:68 scaffold41740 SAMTools SNP 90427 90427 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C51%2C0:99 scaffold41740 SAMTools SNP 90488 90488 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C8.3e-06%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C245:36 scaffold41740 SAMTools SNP 90547 90547 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C90%2C0:99 scaffold41740 SAMTools SNP 90663 90663 45.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C21%2C0:39 scaffold41740 SAMTools SNP 90952 90952 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold41740 SAMTools SNP 91057 91057 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.66%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold41740 SAMTools SNP 91357 91357 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41744 SAMTools SNP 10359 10359 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41744 SAMTools SNP 10368 10368 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41744 SAMTools SNP 10929 10929 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold41744 SAMTools SNP 10953 10953 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0011%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0031%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold41744 SAMTools SNP 12086 12086 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 13944 13944 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41744 SAMTools SNP 14422 14422 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41744 SAMTools SNP 20751 20751 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41744 SAMTools SNP 21193 21193 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41744 SAMTools SNP 21864 21864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41744 SAMTools SNP 31101 31101 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 31125 31125 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41744 SAMTools SNP 32175 32175 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.24%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold41744 SAMTools SNP 32211 32211 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41744 SAMTools SNP 33187 33187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41744 SAMTools SNP 33955 33955 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C253:99 scaffold41744 SAMTools SNP 33974 33974 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41744 SAMTools SNP 69047 69047 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41744 SAMTools SNP 69112 69112 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41744 SAMTools SNP 77223 77223 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41744 SAMTools SNP 77233 77233 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41744 SAMTools SNP 81533 81533 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C9%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.022%2C1.4e-05%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold41744 SAMTools SNP 84796 84796 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C30%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.16%2C0.36%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41744 SAMTools SNP 89779 89779 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41744 SAMTools SNP 94070 94070 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 111995 111995 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 112009 112009 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 113144 113144 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41744 SAMTools SNP 115247 115247 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41744 SAMTools SNP 115248 115248 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41744 SAMTools SNP 115273 115273 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41744 SAMTools SNP 115289 115289 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.22%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold41744 SAMTools SNP 123858 123858 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold41744 SAMTools SNP 124265 124265 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41744 SAMTools SNP 125790 125790 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C5%3BMQ%3D21%3BFQ%3D5.47%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C31:34 scaffold41754 SAMTools SNP 12243 12243 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41754 SAMTools SNP 52953 52953 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold41754 SAMTools SNP 79754 79754 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold41754 SAMTools SNP 79766 79766 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold41754 SAMTools SNP 80188 80188 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.22%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold41754 SAMTools SNP 80198 80198 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.48%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold41754 SAMTools SNP 82701 82701 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41754 SAMTools SNP 84433 84433 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold41754 SAMTools SNP 84699 84699 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41754 SAMTools SNP 85113 85113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41754 SAMTools SNP 93239 93239 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41754 SAMTools SNP 95349 95349 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold41754 SAMTools SNP 101436 101436 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C248:39 scaffold41754 SAMTools SNP 102522 102522 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.35%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41754 SAMTools SNP 103091 103091 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41754 SAMTools SNP 103097 103097 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41754 SAMTools SNP 103118 103118 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41754 SAMTools SNP 103150 103150 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold41754 SAMTools SNP 103282 103282 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold41754 SAMTools SNP 103589 103589 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41762 SAMTools SNP 21156 21156 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold41762 SAMTools SNP 21336 21336 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41762 SAMTools SNP 21662 21662 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41762 SAMTools SNP 22695 22695 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41762 SAMTools SNP 22770 22770 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41762 SAMTools SNP 42571 42571 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41762 SAMTools SNP 42625 42625 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 19156 19156 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 19163 19163 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 24744 24744 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C90:28 scaffold41766 SAMTools SNP 25079 25079 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C51%2C0:99 scaffold41766 SAMTools SNP 25341 25341 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41766 SAMTools SNP 25357 25357 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41766 SAMTools SNP 27935 27935 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41766 SAMTools SNP 28657 28657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41766 SAMTools SNP 45682 45682 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 70711 70711 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41766 SAMTools SNP 72025 72025 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41766 SAMTools SNP 124576 124576 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41766 SAMTools SNP 124617 124617 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41766 SAMTools SNP 125348 125348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 126826 126826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41766 SAMTools SNP 130168 130168 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41772 SAMTools SNP 4855 4855 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.29%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold41772 SAMTools SNP 5105 5105 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41772 SAMTools SNP 5238 5238 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold41772 SAMTools SNP 5264 5264 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C238:99 scaffold41772 SAMTools SNP 6087 6087 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold41772 SAMTools SNP 6237 6237 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41772 SAMTools SNP 6594 6594 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41772 SAMTools SNP 6931 6931 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41772 SAMTools SNP 6941 6941 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41772 SAMTools SNP 7574 7574 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41772 SAMTools SNP 7635 7635 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41772 SAMTools SNP 7661 7661 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41772 SAMTools SNP 7942 7942 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41772 SAMTools SNP 8293 8293 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.071%2C0.057%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold41772 SAMTools SNP 8314 8314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41772 SAMTools SNP 8729 8729 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41772 SAMTools SNP 8732 8732 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41772 SAMTools SNP 8855 8855 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41772 SAMTools SNP 9308 9308 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold41772 SAMTools SNP 9373 9373 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold41772 SAMTools SNP 9989 9989 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold41772 SAMTools SNP 10091 10091 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.53%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold41772 SAMTools SNP 10321 10321 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41772 SAMTools SNP 10333 10333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41772 SAMTools SNP 71475 71475 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41772 SAMTools SNP 75648 75648 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.036%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C136:67 scaffold41772 SAMTools SNP 75708 75708 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold41772 SAMTools SNP 76178 76178 64 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold41772 SAMTools SNP 76549 76549 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41772 SAMTools SNP 76559 76559 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41776 SAMTools SNP 44420 44420 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold41776 SAMTools SNP 45458 45458 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold41776 SAMTools SNP 45516 45516 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold41786 SAMTools SNP 186 186 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41786 SAMTools SNP 4978 4978 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41786 SAMTools SNP 5003 5003 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41786 SAMTools SNP 82489 82489 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41786 SAMTools SNP 95486 95486 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41786 SAMTools SNP 96052 96052 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41786 SAMTools SNP 97264 97264 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold41786 SAMTools SNP 97580 97580 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C234:99 scaffold41786 SAMTools SNP 97643 97643 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold41786 SAMTools SNP 99188 99188 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41786 SAMTools SNP 99257 99257 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41786 SAMTools SNP 100061 100061 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold41786 SAMTools SNP 100085 100085 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.041%2C0.081%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold41786 SAMTools SNP 102724 102724 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.45%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41786 SAMTools SNP 102746 102746 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41786 SAMTools SNP 104485 104485 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41786 SAMTools SNP 104641 104641 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41786 SAMTools SNP 104979 104979 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41786 SAMTools SNP 125336 125336 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41786 SAMTools SNP 125351 125351 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41786 SAMTools SNP 125565 125565 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41786 SAMTools SNP 125622 125622 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41786 SAMTools SNP 125854 125854 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41786 SAMTools SNP 128201 128201 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41792 SAMTools SNP 1732 1732 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 1787 1787 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 1841 1841 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 1865 1865 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41792 SAMTools SNP 2558 2558 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41792 SAMTools SNP 2612 2612 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41792 SAMTools SNP 5432 5432 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C38%3BMQ%3D48%3BFQ%3D20.1%3BPV4%3D0.0053%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold41792 SAMTools SNP 5435 5435 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C38%3BMQ%3D48%3BFQ%3D41%3BPV4%3D0.00061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold41792 SAMTools SNP 5537 5537 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold41792 SAMTools SNP 12374 12374 77.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold41792 SAMTools SNP 12482 12482 66.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold41792 SAMTools SNP 12577 12577 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold41792 SAMTools SNP 12703 12703 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold41792 SAMTools SNP 12950 12950 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C40%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C208%2C0:99 scaffold41792 SAMTools SNP 15950 15950 41.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold41792 SAMTools SNP 25303 25303 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C3%3BMQ%3D43%3BFQ%3D71%3BPV4%3D0.57%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold41792 SAMTools SNP 25315 25315 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41792 SAMTools SNP 26288 26288 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C196:72 scaffold41792 SAMTools SNP 26316 26316 68.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold41792 SAMTools SNP 64381 64381 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C3%3BMQ%3D50%3BFQ%3D-124%3BPV4%3D0.085%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C97%2C0:99 scaffold41792 SAMTools SNP 64704 64704 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.083%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41792 SAMTools SNP 64707 64707 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.53%2C0.036%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41792 SAMTools SNP 64713 64713 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C31%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.22%2C0.00081%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41792 SAMTools SNP 73346 73346 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold41792 SAMTools SNP 73379 73379 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold41792 SAMTools SNP 73462 73462 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41792 SAMTools SNP 74355 74355 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41792 SAMTools SNP 74789 74789 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41792 SAMTools SNP 74830 74830 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41792 SAMTools SNP 75282 75282 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold41792 SAMTools SNP 75347 75347 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.12%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C174:99 scaffold41792 SAMTools SNP 82254 82254 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41792 SAMTools SNP 82264 82264 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41792 SAMTools SNP 89391 89391 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41792 SAMTools SNP 89400 89400 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41792 SAMTools SNP 92812 92812 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold41792 SAMTools SNP 93234 93234 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41792 SAMTools SNP 93237 93237 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41792 SAMTools SNP 94526 94526 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41792 SAMTools SNP 94532 94532 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41792 SAMTools SNP 96822 96822 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 96846 96846 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41792 SAMTools SNP 117186 117186 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 117214 117214 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41792 SAMTools SNP 129807 129807 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41794 SAMTools SNP 14036 14036 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41794 SAMTools SNP 14083 14083 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41794 SAMTools SNP 64801 64801 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41794 SAMTools SNP 68517 68517 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41794 SAMTools SNP 68622 68622 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41794 SAMTools SNP 69881 69881 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41794 SAMTools SNP 123353 123353 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D23%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C57%2C0:99 scaffold41798 SAMTools SNP 21124 21124 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41798 SAMTools SNP 21138 21138 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41798 SAMTools SNP 21180 21180 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41798 SAMTools SNP 21203 21203 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41798 SAMTools SNP 113524 113524 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41798 SAMTools SNP 113861 113861 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41798 SAMTools SNP 113885 113885 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41798 SAMTools SNP 114790 114790 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41798 SAMTools SNP 114942 114942 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold418 SAMTools SNP 1131 1131 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold418 SAMTools SNP 1389 1389 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold418 SAMTools SNP 1396 1396 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold418 SAMTools SNP 1409 1409 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 5086 5086 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C3%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C151%2C0:99 scaffold418 SAMTools SNP 5619 5619 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold418 SAMTools SNP 6279 6279 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 7574 7574 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold418 SAMTools SNP 7676 7676 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 8174 8174 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C80%2C1%2C25%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.12%2C1%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold418 SAMTools SNP 8192 8192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C58%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold418 SAMTools SNP 8253 8253 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0046%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold418 SAMTools SNP 8303 8303 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C1%2C121%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 9167 9167 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.24%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C156:99 scaffold418 SAMTools SNP 9265 9265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 9790 9790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 9810 9810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C48%2C62%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 10348 10348 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C64%2C5%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 10631 10631 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C34%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold418 SAMTools SNP 10782 10782 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 10953 10953 65.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold418 SAMTools SNP 11466 11466 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C345%2C3%2C316%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 11505 11505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C305%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 11559 11559 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C40%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 12028 12028 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C33%2C6%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0016%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold418 SAMTools SNP 12049 12049 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C41%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 12353 12353 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C24%2C41%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 12429 12429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold418 SAMTools SNP 12432 12432 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.43%2C0.38%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold418 SAMTools SNP 12480 12480 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C43%2C27%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-12%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 14101 14101 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C13%2C1%2C14%3BMQ%3D50%3BFQ%3D114%3BPV4%3D2e-08%2C1%2C1%2C4.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold418 SAMTools SNP 14781 14781 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C45%2C0:87 scaffold418 SAMTools SNP 16429 16429 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold418 SAMTools SNP 16450 16450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold418 SAMTools SNP 16468 16468 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold418 SAMTools SNP 16500 16500 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 16556 16556 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 22932 22932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 23830 23830 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 23837 23837 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C11%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.35%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 24938 24938 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C21%2C48%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 25355 25355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C46%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold418 SAMTools SNP 25374 25374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold418 SAMTools SNP 26781 26781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold418 SAMTools SNP 28866 28866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 28896 28896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 28962 28962 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 28983 28983 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C26%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.24%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 29535 29535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C33%2C11%3BMQ%3D50%3BFQ%3D223%3BPV4%3D3.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold418 SAMTools SNP 29616 29616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold418 SAMTools SNP 29622 29622 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C54%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C63:66 scaffold418 SAMTools SNP 31237 31237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold418 SAMTools SNP 32368 32368 27.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold418 SAMTools SNP 32430 32430 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold418 SAMTools SNP 33813 33813 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold418 SAMTools SNP 33833 33833 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C31%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold418 SAMTools SNP 34066 34066 222 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C239%2C10%2C235:99 scaffold418 SAMTools SNP 34152 34152 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C36%2C0:69 scaffold418 SAMTools SNP 34181 34181 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold418 SAMTools SNP 34195 34195 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold418 SAMTools SNP 34225 34225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 34658 34658 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 34929 34929 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold418 SAMTools SNP 34956 34956 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold418 SAMTools SNP 41765 41765 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 42962 42962 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 47573 47573 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold418 SAMTools SNP 47984 47984 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold418 SAMTools SNP 48404 48404 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 49285 49285 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold418 SAMTools SNP 49333 49333 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold418 SAMTools SNP 49377 49377 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold418 SAMTools SNP 49610 49610 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold418 SAMTools SNP 50263 50263 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold418 SAMTools SNP 50426 50426 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold418 SAMTools SNP 51718 51718 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold418 SAMTools SNP 52011 52011 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 52032 52032 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 52598 52598 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold418 SAMTools SNP 59016 59016 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold418 SAMTools SNP 59793 59793 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 59916 59916 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.00047%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold418 SAMTools SNP 62116 62116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 62179 62179 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold418 SAMTools SNP 62716 62716 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C9%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.67%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold418 SAMTools SNP 62741 62741 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold418 SAMTools SNP 62836 62836 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold418 SAMTools SNP 65212 65212 145 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C199:99 scaffold418 SAMTools SNP 70109 70109 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold418 SAMTools SNP 84818 84818 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold418 SAMTools SNP 85151 85151 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold418 SAMTools SNP 120337 120337 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold418 SAMTools SNP 145387 145387 97.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold418 SAMTools SNP 160952 160952 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C27%2C0:47 scaffold418 SAMTools SNP 162147 162147 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold418 SAMTools SNP 166391 166391 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0057%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold418 SAMTools SNP 167079 167079 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold418 SAMTools SNP 167124 167124 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.29%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold418 SAMTools SNP 167788 167788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 168309 168309 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 168638 168638 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C6%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold418 SAMTools SNP 168722 168722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C14%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 168945 168945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold418 SAMTools SNP 169559 169559 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.026%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold418 SAMTools SNP 169841 169841 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold418 SAMTools SNP 169856 169856 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold418 SAMTools SNP 171864 171864 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold418 SAMTools SNP 171867 171867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold418 SAMTools SNP 171912 171912 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.54%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C251:99 scaffold418 SAMTools SNP 174312 174312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 174456 174456 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C9%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0089%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold418 SAMTools SNP 174945 174945 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D5e-05%2C4e-12%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold418 SAMTools SNP 175219 175219 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 175372 175372 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.14%2C5.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold418 SAMTools SNP 175615 175615 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.19%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C186:37 scaffold418 SAMTools SNP 175687 175687 173 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold418 SAMTools SNP 176915 176915 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 176999 176999 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C99%2C0:99 scaffold418 SAMTools SNP 177029 177029 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold418 SAMTools SNP 178139 178139 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.4%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold418 SAMTools SNP 179979 179979 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C18%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 180669 180669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C7%2C54%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C2.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 180684 180684 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C9%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold418 SAMTools SNP 181217 181217 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C8%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold418 SAMTools SNP 181671 181671 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.036%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C247:86 scaffold418 SAMTools SNP 182839 182839 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold418 SAMTools SNP 182867 182867 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C136:74 scaffold418 SAMTools SNP 187407 187407 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C3%2C6%2C0%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D1%2C0.0038%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold418 SAMTools SNP 188390 188390 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C25%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C124:99 scaffold418 SAMTools SNP 188426 188426 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C20%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C0.2%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold418 SAMTools SNP 205913 205913 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold418 SAMTools SNP 205914 205914 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold418 SAMTools SNP 206060 206060 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C222:99 scaffold41806 SAMTools SNP 1189 1189 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41806 SAMTools SNP 1213 1213 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41806 SAMTools SNP 33031 33031 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C54%2C0:99 scaffold41806 SAMTools SNP 83755 83755 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold41806 SAMTools SNP 88263 88263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41806 SAMTools SNP 88373 88373 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C17%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold41806 SAMTools SNP 88422 88422 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C0%2C19%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.00078%2C2e-06%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41806 SAMTools SNP 88743 88743 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C37%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold41806 SAMTools SNP 89390 89390 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 89394 89394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 91312 91312 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41806 SAMTools SNP 92821 92821 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C9:12 scaffold41806 SAMTools SNP 92860 92860 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold41806 SAMTools SNP 92869 92869 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C160:57 scaffold41806 SAMTools SNP 92974 92974 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41806 SAMTools SNP 93012 93012 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41806 SAMTools SNP 96753 96753 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold41806 SAMTools SNP 98219 98219 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C15%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41806 SAMTools SNP 99019 99019 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41806 SAMTools SNP 99063 99063 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold41806 SAMTools SNP 99466 99466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C36%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.29%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold41806 SAMTools SNP 99494 99494 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold41806 SAMTools SNP 99809 99809 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 100497 100497 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold41806 SAMTools SNP 100580 100580 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C45%2C0:87 scaffold41806 SAMTools SNP 100656 100656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41806 SAMTools SNP 101017 101017 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold41806 SAMTools SNP 101019 101019 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41806 SAMTools SNP 101059 101059 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.43%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold41806 SAMTools SNP 101076 101076 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41806 SAMTools SNP 102264 102264 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41806 SAMTools SNP 105103 105103 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 105107 105107 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 108914 108914 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C117%2C0:99 scaffold41806 SAMTools SNP 109174 109174 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C6.1e-30%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C215:64 scaffold41806 SAMTools SNP 109371 109371 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C107:30 scaffold41806 SAMTools SNP 110446 110446 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D49%3BFQ%3D51%3BPV4%3D0.023%2C1%2C0.029%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41806 SAMTools SNP 110451 110451 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C10%2C0%3BMQ%3D47%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold41806 SAMTools SNP 111408 111408 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41806 SAMTools SNP 112735 112735 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C16%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41806 SAMTools SNP 112756 112756 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C24%2C16%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41806 SAMTools SNP 112795 112795 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold41806 SAMTools SNP 112831 112831 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C44%2C9%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D3.6e-05%2C1%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41806 SAMTools SNP 115231 115231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41806 SAMTools SNP 117819 117819 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold41806 SAMTools SNP 120328 120328 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41806 SAMTools SNP 122833 122833 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41806 SAMTools SNP 125291 125291 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41812 SAMTools SNP 50877 50877 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41812 SAMTools SNP 51542 51542 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41812 SAMTools SNP 51569 51569 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41812 SAMTools SNP 53125 53125 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41812 SAMTools SNP 53149 53149 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41812 SAMTools SNP 53197 53197 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold41812 SAMTools SNP 53212 53212 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41812 SAMTools SNP 53729 53729 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41812 SAMTools SNP 53798 53798 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold41812 SAMTools SNP 53809 53809 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.45%2C1.2e-05%2C1%2C7.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C213:61 scaffold41812 SAMTools SNP 53867 53867 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold41812 SAMTools SNP 53876 53876 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold41812 SAMTools SNP 54392 54392 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41812 SAMTools SNP 54422 54422 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold41812 SAMTools SNP 54431 54431 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41812 SAMTools SNP 54676 54676 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41812 SAMTools SNP 54688 54688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41812 SAMTools SNP 55190 55190 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C15%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.18%2C1.5e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41812 SAMTools SNP 56310 56310 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C2%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 56337 56337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41812 SAMTools SNP 56376 56376 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.55%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold41812 SAMTools SNP 57053 57053 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.19%2C0.38%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold41812 SAMTools SNP 57099 57099 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.067%2C0.00015%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C238:31 scaffold41812 SAMTools SNP 57194 57194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41812 SAMTools SNP 57897 57897 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41812 SAMTools SNP 57999 57999 186 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold41812 SAMTools SNP 58792 58792 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C24%2C0:45 scaffold41812 SAMTools SNP 58801 58801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41812 SAMTools SNP 59043 59043 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C25%2C12%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.05%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold41812 SAMTools SNP 59329 59329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C24%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold41812 SAMTools SNP 59398 59398 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41812 SAMTools SNP 59449 59449 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41812 SAMTools SNP 59716 59716 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41812 SAMTools SNP 59984 59984 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C0.17%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C229:99 scaffold41812 SAMTools SNP 59993 59993 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C230:99 scaffold41812 SAMTools SNP 60044 60044 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C4%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold41812 SAMTools SNP 60180 60180 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.31%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 60201 60201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 61484 61484 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C36%2C31%2C21%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 63221 63221 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C27%2C0:51 scaffold41812 SAMTools SNP 65066 65066 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold41812 SAMTools SNP 65121 65121 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C81%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 65220 65220 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D43%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C69%2C0:99 scaffold41812 SAMTools SNP 65238 65238 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C5%2C8%3BMQ%3D42%3BFQ%3D33%3BPV4%3D0.31%2C8.5e-30%2C0.46%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41812 SAMTools SNP 65268 65268 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C30%2C0:47 scaffold41812 SAMTools SNP 65292 65292 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D33%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C57%2C0:99 scaffold41812 SAMTools SNP 65685 65685 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41812 SAMTools SNP 65703 65703 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41812 SAMTools SNP 65724 65724 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.35%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41812 SAMTools SNP 65739 65739 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.35%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold41812 SAMTools SNP 66367 66367 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.33%2C0.075%2C0.08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C249:99 scaffold41812 SAMTools SNP 66391 66391 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C9%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 66415 66415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C43%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41812 SAMTools SNP 66732 66732 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C6%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.3%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 67131 67131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-59%3BPV4%3D0.44%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C32%2C0:61 scaffold41812 SAMTools SNP 67139 67139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 67332 67332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C12%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold41812 SAMTools SNP 67870 67870 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C41%2C4%2C11%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.16%2C0.03%2C1%2C4.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold41812 SAMTools SNP 67876 67876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D0.18%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold41812 SAMTools SNP 68026 68026 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C1%2C18%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.094%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold41812 SAMTools SNP 68455 68455 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C14%2C4%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.031%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41812 SAMTools SNP 68479 68479 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0095%2C7.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41812 SAMTools SNP 68563 68563 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C10%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold41812 SAMTools SNP 68992 68992 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C68%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-06%2C0.017%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 69034 69034 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C14%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.41%2C0.14%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 69419 69419 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C17%2C105%2C0%3BMQ%3D43%3BFQ%3D122%3BPV4%3D0.00092%2C1%2C0.35%2C3.7e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold41812 SAMTools SNP 69444 69444 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1229%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D499%2C11%2C701%2C8%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.17%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 69797 69797 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D721%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C414%2C3%2C297%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 69824 69824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1211%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1209%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 77138 77138 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D728%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold41812 SAMTools SNP 77328 77328 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold41812 SAMTools SNP 78149 78149 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D216%2C202%2C105%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00091%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 78156 78156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D767%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C297%2C356%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 78734 78734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C99%2C620%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 78749 78749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D651%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C66%2C578%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41812 SAMTools SNP 78812 78812 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0003%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C2:5 scaffold41812 SAMTools SNP 78815 78815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41812 SAMTools SNP 80668 80668 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C7%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 80671 80671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C72%2C8%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41812 SAMTools SNP 81882 81882 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41812 SAMTools SNP 81903 81903 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41812 SAMTools SNP 82429 82429 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41812 SAMTools SNP 82694 82694 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.083%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold41812 SAMTools SNP 82718 82718 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.14%2C0.19%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C188:71 scaffold41812 SAMTools SNP 86704 86704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41812 SAMTools SNP 86740 86740 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41812 SAMTools SNP 86959 86959 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41812 SAMTools SNP 86987 86987 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41812 SAMTools SNP 90128 90128 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41812 SAMTools SNP 90275 90275 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41812 SAMTools SNP 95163 95163 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold41812 SAMTools SNP 95189 95189 93.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold41812 SAMTools SNP 95528 95528 56 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C30%2C21%2C85%2C0%2C82:16 scaffold41812 SAMTools SNP 95585 95585 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41812 SAMTools SNP 98475 98475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41812 SAMTools SNP 98526 98526 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41812 SAMTools SNP 98974 98974 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41812 SAMTools SNP 104779 104779 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold41812 SAMTools SNP 108456 108456 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41812 SAMTools SNP 109092 109092 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold41812 SAMTools SNP 109143 109143 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C30%2C0:57 scaffold41812 SAMTools SNP 109218 109218 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41812 SAMTools SNP 109620 109620 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41812 SAMTools SNP 110986 110986 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41812 SAMTools SNP 111004 111004 43.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold41812 SAMTools SNP 111055 111055 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41812 SAMTools SNP 117921 117921 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41812 SAMTools SNP 118132 118132 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41812 SAMTools SNP 118364 118364 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41812 SAMTools SNP 118432 118432 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41812 SAMTools SNP 118448 118448 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41812 SAMTools SNP 118688 118688 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41812 SAMTools SNP 119228 119228 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C15%2C0:27 scaffold41812 SAMTools SNP 119285 119285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41812 SAMTools SNP 119793 119793 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold41812 SAMTools SNP 119825 119825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41812 SAMTools SNP 120044 120044 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41812 SAMTools SNP 120062 120062 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41812 SAMTools SNP 120535 120535 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.038%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold41812 SAMTools SNP 120956 120956 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold41812 SAMTools SNP 121028 121028 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.58%2C0.0012%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold41816 SAMTools SNP 7835 7835 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41816 SAMTools SNP 42287 42287 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold41816 SAMTools SNP 42297 42297 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold41816 SAMTools SNP 42643 42643 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41816 SAMTools SNP 43364 43364 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41816 SAMTools SNP 43441 43441 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41816 SAMTools SNP 43882 43882 114 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold41816 SAMTools SNP 44184 44184 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold41816 SAMTools SNP 44218 44218 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold41816 SAMTools SNP 44971 44971 52.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold41816 SAMTools SNP 84387 84387 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41816 SAMTools SNP 93349 93349 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41816 SAMTools SNP 94541 94541 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0099%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.025%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C174:30 scaffold41816 SAMTools SNP 94635 94635 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41816 SAMTools SNP 94667 94667 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41816 SAMTools SNP 96845 96845 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41816 SAMTools SNP 96875 96875 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41816 SAMTools SNP 104254 104254 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D10%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C78%2C0:99 scaffold41816 SAMTools SNP 104260 104260 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C30%2C0:54 scaffold41816 SAMTools SNP 104297 104297 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C7%2C0%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D0.58%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C237:44 scaffold41816 SAMTools SNP 104365 104365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C3%2C93%2C11%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.2%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41816 SAMTools SNP 104738 104738 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D43%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C30%2C0:57 scaffold41816 SAMTools SNP 105209 105209 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C13%2C15%3BMQ%3D31%3BFQ%3D160%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C196:99 scaffold41816 SAMTools SNP 105260 105260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C48%3BMQ%3D45%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold41816 SAMTools SNP 106659 106659 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C5%3BMQ%3D43%3BFQ%3D112%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold41816 SAMTools SNP 115810 115810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41816 SAMTools SNP 116175 116175 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.63%2C0.016%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold41816 SAMTools SNP 117910 117910 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C42%2C0:81 scaffold41816 SAMTools SNP 117936 117936 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41816 SAMTools SNP 118372 118372 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.079%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41816 SAMTools SNP 119200 119200 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.44%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C73:76 scaffold41816 SAMTools SNP 121374 121374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41816 SAMTools SNP 121669 121669 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold41816 SAMTools SNP 121693 121693 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41816 SAMTools SNP 121754 121754 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41816 SAMTools SNP 122262 122262 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.52%2C0.0013%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C251:55 scaffold41816 SAMTools SNP 122812 122812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C44%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold41816 SAMTools SNP 122823 122823 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41816 SAMTools SNP 124446 124446 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41816 SAMTools SNP 124455 124455 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41816 SAMTools SNP 124461 124461 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41824 SAMTools SNP 1825 1825 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 2714 2714 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 3776 3776 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold41824 SAMTools SNP 4047 4047 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold41824 SAMTools SNP 4209 4209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41824 SAMTools SNP 4240 4240 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41824 SAMTools SNP 4272 4272 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41824 SAMTools SNP 4299 4299 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold41824 SAMTools SNP 4855 4855 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41824 SAMTools SNP 4857 4857 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41824 SAMTools SNP 4938 4938 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41824 SAMTools SNP 5918 5918 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D7.28%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C34:37 scaffold41824 SAMTools SNP 6054 6054 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold41824 SAMTools SNP 6057 6057 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold41824 SAMTools SNP 6722 6722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 7194 7194 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold41824 SAMTools SNP 7674 7674 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41824 SAMTools SNP 9655 9655 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold41824 SAMTools SNP 9658 9658 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C32:29 scaffold41824 SAMTools SNP 10585 10585 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.0013%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold41824 SAMTools SNP 10591 10591 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold41824 SAMTools SNP 11042 11042 3.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold41824 SAMTools SNP 14232 14232 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.079%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C199:49 scaffold41824 SAMTools SNP 18893 18893 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.28%2C0.0018%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C211:99 scaffold41824 SAMTools SNP 18899 18899 53.8 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C68%2C62%2C86%2C0%2C80:10 scaffold41824 SAMTools SNP 19067 19067 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C9%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold41824 SAMTools SNP 19408 19408 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold41824 SAMTools SNP 19567 19567 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold41824 SAMTools SNP 19579 19579 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C14%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C249:99 scaffold41824 SAMTools SNP 19916 19916 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.12%2C0.44%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold41824 SAMTools SNP 19934 19934 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41824 SAMTools SNP 20009 20009 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41824 SAMTools SNP 20011 20011 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold41824 SAMTools SNP 20057 20057 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41824 SAMTools SNP 20482 20482 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41824 SAMTools SNP 20575 20575 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.6%2C0.09%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C149:99 scaffold41824 SAMTools SNP 21076 21076 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41824 SAMTools SNP 21094 21094 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41824 SAMTools SNP 21108 21108 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C0.26%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold41824 SAMTools SNP 21696 21696 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41824 SAMTools SNP 22553 22553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 22560 22560 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41824 SAMTools SNP 24396 24396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41824 SAMTools SNP 24408 24408 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold41824 SAMTools SNP 24504 24504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41824 SAMTools SNP 25533 25533 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.01%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C173:99 scaffold41824 SAMTools SNP 25584 25584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41824 SAMTools SNP 25883 25883 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41824 SAMTools SNP 26869 26869 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold41824 SAMTools SNP 29046 29046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 29092 29092 224 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.012%2C0.19%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold41824 SAMTools SNP 30853 30853 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.54%2C2.6e-05%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41824 SAMTools SNP 31216 31216 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41824 SAMTools SNP 31289 31289 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold41824 SAMTools SNP 31301 31301 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41824 SAMTools SNP 31319 31319 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41824 SAMTools SNP 31646 31646 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 32722 32722 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41824 SAMTools SNP 32746 32746 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41824 SAMTools SNP 33178 33178 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41824 SAMTools SNP 33180 33180 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41824 SAMTools SNP 39850 39850 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.45%2C0.41%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41824 SAMTools SNP 39864 39864 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold41824 SAMTools SNP 39961 39961 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.32%2C0.0007%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold41824 SAMTools SNP 45063 45063 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 60614 60614 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41824 SAMTools SNP 60641 60641 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41824 SAMTools SNP 60840 60840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D898%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C876%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41824 SAMTools SNP 61083 61083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41824 SAMTools SNP 61350 61350 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C48%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.28%2C1%2C4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 63300 63300 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C43%2C20%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.49%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 63788 63788 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C42%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.23%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 63812 63812 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41824 SAMTools SNP 63824 63824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C63%2C13%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 66632 66632 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C4%2C7%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.46%2C0.058%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold41824 SAMTools SNP 66638 66638 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C38%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold41824 SAMTools SNP 68077 68077 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C48%2C2%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold41824 SAMTools SNP 68131 68131 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41824 SAMTools SNP 69635 69635 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41824 SAMTools SNP 70170 70170 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold41824 SAMTools SNP 70199 70199 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41824 SAMTools SNP 77922 77922 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold41824 SAMTools SNP 78256 78256 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 97485 97485 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C36%2C0:69 scaffold41824 SAMTools SNP 97510 97510 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.06%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C151:97 scaffold41824 SAMTools SNP 100566 100566 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold41824 SAMTools SNP 100576 100576 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold41824 SAMTools SNP 108226 108226 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 123385 123385 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41824 SAMTools SNP 127545 127545 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41824 SAMTools SNP 130300 130300 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold41824 SAMTools SNP 130357 130357 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold41828 SAMTools SNP 2004 2004 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold41828 SAMTools SNP 23332 23332 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41828 SAMTools SNP 23898 23898 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.23%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold41828 SAMTools SNP 23920 23920 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.36%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold41828 SAMTools SNP 23929 23929 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold41828 SAMTools SNP 23950 23950 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41828 SAMTools SNP 25098 25098 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41828 SAMTools SNP 25544 25544 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41828 SAMTools SNP 28295 28295 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 28334 28334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41828 SAMTools SNP 28340 28340 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.015%2C0.084%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C219:99 scaffold41828 SAMTools SNP 29191 29191 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0023%2C0.27%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C194:99 scaffold41828 SAMTools SNP 29212 29212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41828 SAMTools SNP 31479 31479 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C236:62 scaffold41828 SAMTools SNP 31989 31989 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41828 SAMTools SNP 32010 32010 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C7.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C237:80 scaffold41828 SAMTools SNP 37748 37748 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C27%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C3.1e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C232:70 scaffold41828 SAMTools SNP 37988 37988 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.38%2C3.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C226:39 scaffold41828 SAMTools SNP 37999 37999 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.38%2C8.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C226:99 scaffold41828 SAMTools SNP 38049 38049 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C97:62 scaffold41828 SAMTools SNP 39777 39777 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C28%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.75%2C9.1e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold41828 SAMTools SNP 39837 39837 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C1%2C21%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.15%2C1.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold41828 SAMTools SNP 39987 39987 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0:99 scaffold41828 SAMTools SNP 40206 40206 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C102%2C0:99 scaffold41828 SAMTools SNP 40350 40350 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C108%2C0:99 scaffold41828 SAMTools SNP 40750 40750 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41828 SAMTools SNP 41098 41098 96.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C15%2C0:27 scaffold41828 SAMTools SNP 41103 41103 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C21:24 scaffold41828 SAMTools SNP 41107 41107 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41828 SAMTools SNP 41188 41188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold41828 SAMTools SNP 41527 41527 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C48%2C30%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 41624 41624 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C62%2C22%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C9.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 42089 42089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C11%2C99%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41828 SAMTools SNP 42422 42422 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.36%2C0.32%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold41828 SAMTools SNP 42923 42923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41828 SAMTools SNP 43620 43620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 46964 46964 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C47%2C13%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C9.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 47011 47011 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C30%2C30%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 47749 47749 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C4%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.069%2C1%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold41828 SAMTools SNP 47794 47794 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 48274 48274 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.61%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold41828 SAMTools SNP 49637 49637 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 49688 49688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41828 SAMTools SNP 49742 49742 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41828 SAMTools SNP 49766 49766 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41828 SAMTools SNP 49817 49817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C13%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.038%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 54583 54583 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C26%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 60631 60631 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.32%2C7.5e-21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C238:34 scaffold41828 SAMTools SNP 60957 60957 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.6%2C0.0018%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41828 SAMTools SNP 65888 65888 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold41828 SAMTools SNP 65935 65935 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold41828 SAMTools SNP 66175 66175 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41828 SAMTools SNP 68025 68025 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41828 SAMTools SNP 68056 68056 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41828 SAMTools SNP 68352 68352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41828 SAMTools SNP 68693 68693 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C69%2C0:99 scaffold41828 SAMTools SNP 68777 68777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41828 SAMTools SNP 69495 69495 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41828 SAMTools SNP 69977 69977 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41828 SAMTools SNP 70000 70000 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 70131 70131 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41828 SAMTools SNP 70166 70166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 70316 70316 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 70333 70333 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 75109 75109 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41828 SAMTools SNP 75146 75146 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C142:99 scaffold41828 SAMTools SNP 75155 75155 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold41828 SAMTools SNP 75510 75510 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold41828 SAMTools SNP 75778 75778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41828 SAMTools SNP 75802 75802 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41828 SAMTools SNP 76454 76454 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41828 SAMTools SNP 76466 76466 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41828 SAMTools SNP 76807 76807 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.35%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C221:99 scaffold41828 SAMTools SNP 76816 76816 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C199:99 scaffold41828 SAMTools SNP 77117 77117 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold41828 SAMTools SNP 77165 77165 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 78220 78220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41828 SAMTools SNP 78247 78247 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold41828 SAMTools SNP 78253 78253 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41828 SAMTools SNP 78274 78274 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C18%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C245:99 scaffold41828 SAMTools SNP 78683 78683 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold41828 SAMTools SNP 78930 78930 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 78931 78931 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 79002 79002 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 79729 79729 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 79765 79765 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 79780 79780 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 81029 81029 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 81046 81046 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 81343 81343 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C9%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold41828 SAMTools SNP 81671 81671 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C0.098%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold41828 SAMTools SNP 81686 81686 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold41828 SAMTools SNP 82282 82282 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41828 SAMTools SNP 82307 82307 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 82322 82322 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41828 SAMTools SNP 82358 82358 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41828 SAMTools SNP 83148 83148 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41828 SAMTools SNP 83179 83179 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.33%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C228:99 scaffold41828 SAMTools SNP 83507 83507 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.3%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold41828 SAMTools SNP 83534 83534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C12%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.53%2C0.39%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold41828 SAMTools SNP 83554 83554 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41828 SAMTools SNP 84279 84279 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41828 SAMTools SNP 84414 84414 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41828 SAMTools SNP 84420 84420 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41828 SAMTools SNP 84941 84941 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41828 SAMTools SNP 85006 85006 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41828 SAMTools SNP 85418 85418 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold41828 SAMTools SNP 85430 85430 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D86.9%3BPV4%3D0.23%2C0.03%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C116:99 scaffold41828 SAMTools SNP 85496 85496 23.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold41828 SAMTools SNP 85514 85514 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold41828 SAMTools SNP 85523 85523 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 86037 86037 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41828 SAMTools SNP 86540 86540 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41828 SAMTools SNP 86558 86558 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C21%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C59:62 scaffold41828 SAMTools SNP 86562 86562 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.00065%2C0.036%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold41828 SAMTools SNP 86621 86621 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D0.15%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C157:69 scaffold41828 SAMTools SNP 90097 90097 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold41828 SAMTools SNP 90415 90415 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41828 SAMTools SNP 90885 90885 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold41828 SAMTools SNP 90901 90901 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold41828 SAMTools SNP 93129 93129 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C6.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41828 SAMTools SNP 100129 100129 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41828 SAMTools SNP 100207 100207 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 100243 100243 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41828 SAMTools SNP 100245 100245 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41828 SAMTools SNP 110875 110875 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D48%3BFQ%3D120%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C186:99 scaffold41828 SAMTools SNP 110883 110883 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41828 SAMTools SNP 117316 117316 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41828 SAMTools SNP 117851 117851 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41828 SAMTools SNP 118352 118352 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41828 SAMTools SNP 118417 118417 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41828 SAMTools SNP 122662 122662 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0016%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold41828 SAMTools SNP 126821 126821 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold41828 SAMTools SNP 130502 130502 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41828 SAMTools SNP 130589 130589 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.048%2C8.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C71:53 scaffold41828 SAMTools SNP 131774 131774 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C75%2C1%2C16%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold41828 SAMTools SNP 132223 132223 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41828 SAMTools SNP 132224 132224 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41828 SAMTools SNP 132705 132705 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41828 SAMTools SNP 132762 132762 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41828 SAMTools SNP 132966 132966 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41828 SAMTools SNP 133110 133110 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41832 SAMTools SNP 1512 1512 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41832 SAMTools SNP 1669 1669 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold41832 SAMTools SNP 1776 1776 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C25%2C63%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.00095%2C1%2C1%2C9.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold41832 SAMTools SNP 2143 2143 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D805%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C793%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41832 SAMTools SNP 2427 2427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 2631 2631 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41832 SAMTools SNP 4141 4141 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41832 SAMTools SNP 4162 4162 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41832 SAMTools SNP 15950 15950 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold41832 SAMTools SNP 15982 15982 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.23%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold41832 SAMTools SNP 16431 16431 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 16783 16783 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 17142 17142 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.012%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 17149 17149 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C30%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D7.7e-05%2C1e-13%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41832 SAMTools SNP 17167 17167 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41832 SAMTools SNP 17179 17179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 18188 18188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41832 SAMTools SNP 21636 21636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41832 SAMTools SNP 25874 25874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D894%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C210%2C435%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 36456 36456 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold41832 SAMTools SNP 36537 36537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold41832 SAMTools SNP 36860 36860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41832 SAMTools SNP 36956 36956 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C9%2C20%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C6.6e-12%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold41832 SAMTools SNP 38835 38835 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C60%2C1%2C28%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.54%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold41832 SAMTools SNP 39003 39003 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C33%2C17%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.25%2C0.032%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold41832 SAMTools SNP 40690 40690 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C76%2C22%2C12%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.34%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold41832 SAMTools SNP 40693 40693 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C69%2C21%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41832 SAMTools SNP 44646 44646 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 44664 44664 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41832 SAMTools SNP 46164 46164 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 46185 46185 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 48373 48373 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41832 SAMTools SNP 48475 48475 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41832 SAMTools SNP 48849 48849 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41832 SAMTools SNP 48867 48867 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41832 SAMTools SNP 49305 49305 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 49712 49712 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41832 SAMTools SNP 50418 50418 12.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold41832 SAMTools SNP 50536 50536 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41832 SAMTools SNP 50544 50544 103 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold41832 SAMTools SNP 50788 50788 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41832 SAMTools SNP 51034 51034 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41832 SAMTools SNP 51412 51412 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.089%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold41832 SAMTools SNP 51904 51904 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 52229 52229 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold41832 SAMTools SNP 52788 52788 57.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold41832 SAMTools SNP 52812 52812 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41832 SAMTools SNP 53171 53171 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold41832 SAMTools SNP 55526 55526 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 55554 55554 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 56856 56856 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41832 SAMTools SNP 57006 57006 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41832 SAMTools SNP 57186 57186 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 61944 61944 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.012%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold41832 SAMTools SNP 61970 61970 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41832 SAMTools SNP 61998 61998 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold41832 SAMTools SNP 62834 62834 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41832 SAMTools SNP 63817 63817 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 63853 63853 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 65694 65694 16.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold41832 SAMTools SNP 67675 67675 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C12%3BMQ%3D28%3BFQ%3D26%3BPV4%3D1%2C1%2C0.1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C168:56 scaffold41832 SAMTools SNP 68008 68008 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C4%3BMQ%3D38%3BFQ%3D116%3BPV4%3D1%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C152:99 scaffold41832 SAMTools SNP 68625 68625 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold41832 SAMTools SNP 73627 73627 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41832 SAMTools SNP 75451 75451 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41832 SAMTools SNP 75519 75519 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 77142 77142 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41832 SAMTools SNP 77148 77148 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41832 SAMTools SNP 77298 77298 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 77766 77766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41832 SAMTools SNP 78058 78058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41832 SAMTools SNP 78097 78097 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C54%2C0:99 scaffold41832 SAMTools SNP 79782 79782 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C0.016%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold41832 SAMTools SNP 79811 79811 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41832 SAMTools SNP 79823 79823 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C101:36 scaffold41832 SAMTools SNP 83114 83114 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41832 SAMTools SNP 84098 84098 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold41832 SAMTools SNP 84149 84149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41832 SAMTools SNP 90009 90009 42.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold41832 SAMTools SNP 90128 90128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41832 SAMTools SNP 90358 90358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41832 SAMTools SNP 90379 90379 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41832 SAMTools SNP 90424 90424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C66%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0082%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 90702 90702 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C7%2C11%2C5%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.13%2C0.0085%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold41832 SAMTools SNP 90719 90719 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C20%2C16%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0033%2C1.9e-05%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41832 SAMTools SNP 90726 90726 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C32%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D9.5e-07%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold41832 SAMTools SNP 90861 90861 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.44%2C9.2e-19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C215:44 scaffold41832 SAMTools SNP 90893 90893 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41832 SAMTools SNP 90906 90906 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold41832 SAMTools SNP 90912 90912 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41832 SAMTools SNP 91178 91178 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold41832 SAMTools SNP 91193 91193 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C2%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.057%2C0.17%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C243:99 scaffold41832 SAMTools SNP 91214 91214 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41832 SAMTools SNP 91302 91302 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41832 SAMTools SNP 91521 91521 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41832 SAMTools SNP 91539 91539 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C121%2C73:93 scaffold41832 SAMTools SNP 91560 91560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 91590 91590 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41832 SAMTools SNP 91596 91596 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41832 SAMTools SNP 91858 91858 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C124%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41832 SAMTools SNP 92144 92144 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.31%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41832 SAMTools SNP 92147 92147 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41832 SAMTools SNP 92645 92645 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 92665 92665 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 92681 92681 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41832 SAMTools SNP 92682 92682 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41832 SAMTools SNP 92702 92702 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C36%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold41832 SAMTools SNP 93296 93296 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.00035%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold41832 SAMTools SNP 93297 93297 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.048%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C13%2C0:23 scaffold41832 SAMTools SNP 93417 93417 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C3.9e-15%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41832 SAMTools SNP 93549 93549 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C118:99 scaffold41832 SAMTools SNP 93561 93561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41832 SAMTools SNP 93576 93576 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.031%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41832 SAMTools SNP 93875 93875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41832 SAMTools SNP 94211 94211 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C17%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0072%2C0.0084%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold41832 SAMTools SNP 94214 94214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C4%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.13%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold41832 SAMTools SNP 94244 94244 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C45%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold41832 SAMTools SNP 94401 94401 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C43%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41832 SAMTools SNP 94440 94440 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41832 SAMTools SNP 94620 94620 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.36%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C8:11 scaffold41832 SAMTools SNP 94632 94632 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold41832 SAMTools SNP 94650 94650 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41832 SAMTools SNP 94686 94686 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold41832 SAMTools SNP 94707 94707 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold41832 SAMTools SNP 94922 94922 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold41832 SAMTools SNP 94925 94925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41832 SAMTools SNP 95347 95347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41832 SAMTools SNP 95350 95350 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41832 SAMTools SNP 95521 95521 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41832 SAMTools SNP 95818 95818 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C52%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold41832 SAMTools SNP 95920 95920 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41832 SAMTools SNP 95950 95950 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold41832 SAMTools SNP 97915 97915 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 99313 99313 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 99421 99421 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold41832 SAMTools SNP 99451 99451 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C243:99 scaffold41832 SAMTools SNP 99634 99634 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41832 SAMTools SNP 99651 99651 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41832 SAMTools SNP 99703 99703 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41832 SAMTools SNP 99835 99835 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold41832 SAMTools SNP 100018 100018 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41832 SAMTools SNP 100228 100228 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41832 SAMTools SNP 100359 100359 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41832 SAMTools SNP 100368 100368 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41832 SAMTools SNP 104179 104179 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41832 SAMTools SNP 104317 104317 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41832 SAMTools SNP 112256 112256 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold41832 SAMTools SNP 112283 112283 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold41832 SAMTools SNP 112795 112795 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41832 SAMTools SNP 112837 112837 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0032%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold41832 SAMTools SNP 112870 112870 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41832 SAMTools SNP 113263 113263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41832 SAMTools SNP 113350 113350 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41832 SAMTools SNP 113841 113841 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41832 SAMTools SNP 114324 114324 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold41832 SAMTools SNP 114368 114368 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41832 SAMTools SNP 117446 117446 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold41832 SAMTools SNP 117569 117569 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.64%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold41832 SAMTools SNP 121350 121350 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41832 SAMTools SNP 122231 122231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41832 SAMTools SNP 122254 122254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41832 SAMTools SNP 122524 122524 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41832 SAMTools SNP 122615 122615 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C51:54 scaffold41832 SAMTools SNP 123283 123283 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41832 SAMTools SNP 123316 123316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41832 SAMTools SNP 123581 123581 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold41832 SAMTools SNP 123940 123940 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C93%2C0:99 scaffold41832 SAMTools SNP 128124 128124 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41832 SAMTools SNP 133579 133579 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D43%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C180:99 scaffold41832 SAMTools SNP 134117 134117 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C11%2C0%3BMQ%3D49%3BFQ%3D163%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C249:99 scaffold41834 SAMTools SNP 1639 1639 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41834 SAMTools SNP 1640 1640 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41834 SAMTools SNP 113868 113868 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold41834 SAMTools SNP 118154 118154 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41834 SAMTools SNP 119423 119423 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold41834 SAMTools SNP 129645 129645 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold41852 SAMTools SNP 10201 10201 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C36%2C0:69 scaffold41852 SAMTools SNP 10415 10415 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold41852 SAMTools SNP 10448 10448 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold41852 SAMTools SNP 10973 10973 16.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold41852 SAMTools SNP 11029 11029 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41852 SAMTools SNP 11936 11936 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41852 SAMTools SNP 21060 21060 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold41852 SAMTools SNP 31155 31155 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold41852 SAMTools SNP 43410 43410 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 47208 47208 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41852 SAMTools SNP 54345 54345 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 54408 54408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 54417 54417 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 56810 56810 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41852 SAMTools SNP 57087 57087 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41852 SAMTools SNP 57123 57123 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 57150 57150 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41852 SAMTools SNP 58808 58808 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 58823 58823 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 60584 60584 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41852 SAMTools SNP 60622 60622 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.087%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41852 SAMTools SNP 60936 60936 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 65300 65300 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 73600 73600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41852 SAMTools SNP 73648 73648 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold41852 SAMTools SNP 74211 74211 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41852 SAMTools SNP 74225 74225 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41852 SAMTools SNP 75006 75006 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41852 SAMTools SNP 75039 75039 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41852 SAMTools SNP 75041 75041 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold41852 SAMTools SNP 75088 75088 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.028%2C1.9e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C191:34 scaffold41852 SAMTools SNP 75427 75427 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41852 SAMTools SNP 75862 75862 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 76151 76151 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.16%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41852 SAMTools SNP 76582 76582 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C17%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C4.8e-12%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41852 SAMTools SNP 76957 76957 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41852 SAMTools SNP 76976 76976 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41852 SAMTools SNP 77616 77616 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41852 SAMTools SNP 77715 77715 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.55%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold41852 SAMTools SNP 78454 78454 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold41852 SAMTools SNP 79102 79102 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.012%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C175:81 scaffold41852 SAMTools SNP 79150 79150 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41852 SAMTools SNP 92054 92054 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold41852 SAMTools SNP 92244 92244 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold41852 SAMTools SNP 92249 92249 18 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold41852 SAMTools SNP 98064 98064 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 99966 99966 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41852 SAMTools SNP 104830 104830 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41852 SAMTools SNP 106533 106533 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C42%2C0:81 scaffold41852 SAMTools SNP 108643 108643 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41852 SAMTools SNP 108649 108649 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41852 SAMTools SNP 113034 113034 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41852 SAMTools SNP 126539 126539 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.03%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold41858 SAMTools SNP 640 640 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 6025 6025 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 6110 6110 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41858 SAMTools SNP 6113 6113 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41858 SAMTools SNP 6445 6445 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41858 SAMTools SNP 6482 6482 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41858 SAMTools SNP 7374 7374 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41858 SAMTools SNP 10662 10662 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41858 SAMTools SNP 11165 11165 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.11%2C0.27%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C74:77 scaffold41858 SAMTools SNP 11238 11238 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 15100 15100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 15346 15346 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 15586 15586 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 16880 16880 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold41858 SAMTools SNP 16912 16912 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41858 SAMTools SNP 17038 17038 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold41858 SAMTools SNP 17646 17646 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold41858 SAMTools SNP 23468 23468 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold41858 SAMTools SNP 27022 27022 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41858 SAMTools SNP 28076 28076 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.55%2C0.00028%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41858 SAMTools SNP 31102 31102 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold41858 SAMTools SNP 31886 31886 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41858 SAMTools SNP 34241 34241 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0011%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.26%2C6e-10%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41858 SAMTools SNP 37502 37502 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold41858 SAMTools SNP 37971 37971 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold41858 SAMTools SNP 39975 39975 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold41858 SAMTools SNP 41739 41739 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C38%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.57%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41858 SAMTools SNP 42831 42831 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold41858 SAMTools SNP 42867 42867 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41858 SAMTools SNP 45955 45955 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 46118 46118 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41858 SAMTools SNP 46137 46137 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 47459 47459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 47470 47470 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 48796 48796 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C30%2C0:57 scaffold41858 SAMTools SNP 55851 55851 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold41858 SAMTools SNP 57402 57402 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C30%2C0:57 scaffold41858 SAMTools SNP 76146 76146 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C51%2C0:99 scaffold41858 SAMTools SNP 77187 77187 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41858 SAMTools SNP 77520 77520 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D44%2C2%2C36%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.9e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41858 SAMTools SNP 77829 77829 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.024%2C5.7e-31%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold41858 SAMTools SNP 77895 77895 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C184:67 scaffold41858 SAMTools SNP 78615 78615 12.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold41858 SAMTools SNP 79013 79013 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold41858 SAMTools SNP 79021 79021 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41858 SAMTools SNP 79152 79152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 84911 84911 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C0.02%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 85404 85404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C24%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.058%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold41858 SAMTools SNP 85714 85714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold41858 SAMTools SNP 85786 85786 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41858 SAMTools SNP 86307 86307 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold41858 SAMTools SNP 86316 86316 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41858 SAMTools SNP 87035 87035 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41858 SAMTools SNP 87056 87056 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41858 SAMTools SNP 87084 87084 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold41858 SAMTools SNP 87107 87107 46.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold41858 SAMTools SNP 87731 87731 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41858 SAMTools SNP 87761 87761 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41858 SAMTools SNP 88078 88078 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold41858 SAMTools SNP 88102 88102 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold41858 SAMTools SNP 88150 88150 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold41858 SAMTools SNP 88560 88560 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41858 SAMTools SNP 88646 88646 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 89000 89000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41858 SAMTools SNP 89602 89602 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41858 SAMTools SNP 90040 90040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 90407 90407 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41858 SAMTools SNP 90651 90651 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold41858 SAMTools SNP 94931 94931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41858 SAMTools SNP 95879 95879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 99039 99039 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41858 SAMTools SNP 99075 99075 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41858 SAMTools SNP 99414 99414 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold41858 SAMTools SNP 103182 103182 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold41858 SAMTools SNP 106195 106195 188 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C59%2C0%2C72%3BMQ%3D39%3BFQ%3D191%3BPV4%3D9.7e-08%2C2.7e-10%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold41858 SAMTools SNP 115777 115777 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41858 SAMTools SNP 115833 115833 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41858 SAMTools SNP 118757 118757 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold41858 SAMTools SNP 118762 118762 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.06%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold41858 SAMTools SNP 119504 119504 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C0.083%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold41858 SAMTools SNP 119531 119531 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.27%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C218:88 scaffold41858 SAMTools SNP 119548 119548 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41858 SAMTools SNP 119690 119690 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold41858 SAMTools SNP 120021 120021 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold41858 SAMTools SNP 120123 120123 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41858 SAMTools SNP 120794 120794 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.015%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold41858 SAMTools SNP 120808 120808 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold41858 SAMTools SNP 120878 120878 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.39%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold41858 SAMTools SNP 121783 121783 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D30%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C57%2C0:99 scaffold41858 SAMTools SNP 121884 121884 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C8%3BMQ%3D32%3BFQ%3D83%3BPV4%3D1%2C0.49%2C0.15%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C145:99 scaffold41858 SAMTools SNP 122781 122781 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold41858 SAMTools SNP 124027 124027 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C33%2C0:63 scaffold41858 SAMTools SNP 124176 124176 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.00045%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C138:67 scaffold41858 SAMTools SNP 124728 124728 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold41858 SAMTools SNP 124849 124849 18.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold41858 SAMTools SNP 124857 124857 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold41858 SAMTools SNP 126504 126504 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold41858 SAMTools SNP 127901 127901 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.00031%2C1.9e-14%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41858 SAMTools SNP 128053 128053 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C6%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.11%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41858 SAMTools SNP 128071 128071 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C2%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.64%2C0.14%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41858 SAMTools SNP 128505 128505 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 128529 128529 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.014%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold41858 SAMTools SNP 128535 128535 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.023%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold41858 SAMTools SNP 128565 128565 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.015%2C1%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold41858 SAMTools SNP 129452 129452 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 130238 130238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold41858 SAMTools SNP 130410 130410 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold41858 SAMTools SNP 130458 130458 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41858 SAMTools SNP 130473 130473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41858 SAMTools SNP 130496 130496 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.26%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold41858 SAMTools SNP 130736 130736 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41858 SAMTools SNP 130759 130759 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41858 SAMTools SNP 131141 131141 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.18%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 131222 131222 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 133420 133420 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C13%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41858 SAMTools SNP 133855 133855 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.022%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold41858 SAMTools SNP 134386 134386 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold41876 SAMTools SNP 2904 2904 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41876 SAMTools SNP 2906 2906 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41876 SAMTools SNP 51100 51100 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C159:99 scaffold41876 SAMTools SNP 56433 56433 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 56836 56836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 58188 58188 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41876 SAMTools SNP 60181 60181 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold41876 SAMTools SNP 60713 60713 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C9%2C12%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.067%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41876 SAMTools SNP 61036 61036 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C27%2C41%2C35%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C7.2e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold41876 SAMTools SNP 72844 72844 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.029%2C0.00045%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold41876 SAMTools SNP 72900 72900 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.63%2C0.38%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41876 SAMTools SNP 73531 73531 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C3%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 73764 73764 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 75934 75934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41876 SAMTools SNP 76141 76141 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 76317 76317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.025%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 76444 76444 96 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C20%2C27%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.67%2C6.2e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold41876 SAMTools SNP 76525 76525 3.98 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C15%2C9%2C32%2C0%2C29:5 scaffold41876 SAMTools SNP 77182 77182 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.57%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41876 SAMTools SNP 78010 78010 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41876 SAMTools SNP 78189 78189 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.55%2C0.0012%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold41876 SAMTools SNP 78198 78198 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.27%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold41876 SAMTools SNP 78354 78354 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41876 SAMTools SNP 78687 78687 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C128%2C0%2C64%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1.4e-09%2C2.4e-18%2C1%2C6.6e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold41876 SAMTools SNP 79140 79140 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C86%2C0%2C24%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00061%2C1%2C1%2C1.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41876 SAMTools SNP 79938 79938 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C61%2C59%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 84151 84151 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C54%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41876 SAMTools SNP 84510 84510 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41876 SAMTools SNP 86219 86219 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C16%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 86518 86518 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C194:51 scaffold41876 SAMTools SNP 86542 86542 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C30%2C0:57 scaffold41876 SAMTools SNP 86617 86617 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C38%2C22%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 87264 87264 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C20%2C22%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.54%2C0.28%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41876 SAMTools SNP 89007 89007 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C177:99 scaffold41876 SAMTools SNP 89210 89210 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C27%2C9%2C18%3BMQ%3D35%3BFQ%3D7.8%3BPV4%3D0.23%2C7.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41876 SAMTools SNP 89661 89661 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C255%2C0:99 scaffold41876 SAMTools SNP 96283 96283 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold41876 SAMTools SNP 96582 96582 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 98052 98052 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.031%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold41876 SAMTools SNP 98714 98714 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 98751 98751 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 99580 99580 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 99607 99607 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41876 SAMTools SNP 99611 99611 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41876 SAMTools SNP 99992 99992 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41876 SAMTools SNP 103247 103247 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold41876 SAMTools SNP 107617 107617 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold41876 SAMTools SNP 107650 107650 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold41876 SAMTools SNP 108084 108084 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold41876 SAMTools SNP 108211 108211 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41876 SAMTools SNP 110116 110116 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C115:80 scaffold41876 SAMTools SNP 110118 110118 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold41876 SAMTools SNP 112257 112257 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41876 SAMTools SNP 112301 112301 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold41876 SAMTools SNP 112325 112325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41876 SAMTools SNP 112836 112836 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C215:99 scaffold41876 SAMTools SNP 112869 112869 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold41876 SAMTools SNP 113235 113235 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold41876 SAMTools SNP 113291 113291 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold41876 SAMTools SNP 113880 113880 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold41876 SAMTools SNP 126100 126100 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41876 SAMTools SNP 126361 126361 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold41876 SAMTools SNP 126726 126726 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41876 SAMTools SNP 127260 127260 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold41876 SAMTools SNP 128329 128329 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 128384 128384 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41876 SAMTools SNP 128584 128584 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41876 SAMTools SNP 129342 129342 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41882 SAMTools SNP 266 266 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41882 SAMTools SNP 349 349 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C78:31 scaffold41882 SAMTools SNP 51468 51468 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41884 SAMTools SNP 1497 1497 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41884 SAMTools SNP 12570 12570 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C108%2C0:99 scaffold41884 SAMTools SNP 15440 15440 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C39%2C0%2C6%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41884 SAMTools SNP 15449 15449 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41884 SAMTools SNP 18316 18316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41884 SAMTools SNP 18336 18336 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41884 SAMTools SNP 19730 19730 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41884 SAMTools SNP 19765 19765 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41884 SAMTools SNP 25774 25774 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41884 SAMTools SNP 44458 44458 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41884 SAMTools SNP 44494 44494 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41884 SAMTools SNP 46306 46306 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold41884 SAMTools SNP 64839 64839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41884 SAMTools SNP 69069 69069 53.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold41884 SAMTools SNP 105849 105849 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41884 SAMTools SNP 106170 106170 226 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold41884 SAMTools SNP 110273 110273 32.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold41884 SAMTools SNP 117138 117138 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold41884 SAMTools SNP 117248 117248 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41890 SAMTools SNP 792 792 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41890 SAMTools SNP 957 957 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold41890 SAMTools SNP 1498 1498 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41890 SAMTools SNP 2169 2169 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C27%2C0:51 scaffold41890 SAMTools SNP 2177 2177 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41890 SAMTools SNP 2341 2341 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold41890 SAMTools SNP 3057 3057 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41890 SAMTools SNP 3059 3059 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41890 SAMTools SNP 3062 3062 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold41890 SAMTools SNP 3078 3078 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41890 SAMTools SNP 3083 3083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C4%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold41890 SAMTools SNP 4683 4683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 4853 4853 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 4891 4891 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C25%2C19%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C0.091%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 5230 5230 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C27%2C107%2C46%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.22%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 5256 5256 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 9889 9889 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C210%2C18%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 10035 10035 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C50%2C57%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 10260 10260 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C314%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 11164 11164 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D700%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C251%2C448%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 11366 11366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C265%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 12177 12177 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 12379 12379 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C30%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold41890 SAMTools SNP 12393 12393 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C42%2C15%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.00084%2C0.3%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold41890 SAMTools SNP 12424 12424 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C24%2C24%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0062%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold41890 SAMTools SNP 12681 12681 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C38%2C1%2C18%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold41890 SAMTools SNP 12839 12839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C17%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 12845 12845 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 13115 13115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C33%2C34%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 13712 13712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41890 SAMTools SNP 13731 13731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C39%2C19%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 13749 13749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C10%2C51%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.64%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 14429 14429 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C47%3BMQ%3D41%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41890 SAMTools SNP 14436 14436 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C17%2C15%3BMQ%3D39%3BFQ%3D205%3BPV4%3D0.19%2C0.049%2C0.079%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold41890 SAMTools SNP 14594 14594 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C17%2C20%3BMQ%3D23%3BFQ%3D111%3BPV4%3D0.37%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C138:99 scaffold41890 SAMTools SNP 15403 15403 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 15432 15432 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C20%2C0%3BMQ%3D35%3BFQ%3D64%3BPV4%3D1%2C1%2C0.099%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C231:94 scaffold41890 SAMTools SNP 16255 16255 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C1%3BMQ%3D26%3BFQ%3D-91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C64%2C0:99 scaffold41890 SAMTools SNP 16281 16281 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C15%2C16%3BMQ%3D26%3BFQ%3D152%3BPV4%3D0.016%2C0.29%2C0.068%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold41890 SAMTools SNP 16302 16302 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C49%2C18%2C64%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.0003%2C0.47%2C1%2C4.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 16337 16337 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D512%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C208%2C2%2C254%3BMQ%3D44%3BFQ%3D225%3BPV4%3D2.4e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 16367 16367 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 16379 16379 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 17029 17029 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C2%2C1%2C27%3BMQ%3D12%3BFQ%3D-61%3BPV4%3D9.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C34%2C0:64 scaffold41890 SAMTools SNP 17051 17051 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D14%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C84%2C0:99 scaffold41890 SAMTools SNP 17080 17080 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 17102 17102 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41890 SAMTools SNP 17954 17954 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D327%2C1%2C85%2C2%3BMQ%3D45%3BFQ%3D36%3BPV4%3D0.11%2C0.0096%2C2.9e-07%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C212:66 scaffold41890 SAMTools SNP 17974 17974 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C18%2C29%2C0%3BMQ%3D47%3BFQ%3D109%3BPV4%3D0.012%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold41890 SAMTools SNP 17975 17975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C19%2C84%2C0%3BMQ%3D47%3BFQ%3D225%3BPV4%3D2.8e-11%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 17986 17986 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D42%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41890 SAMTools SNP 18157 18157 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold41890 SAMTools SNP 18209 18209 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41890 SAMTools SNP 18390 18390 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C116%3BMQ%3D44%3BFQ%3D4.77%3BPV4%3D4.3e-10%2C1%2C1%2C2.4e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C30:33 scaffold41890 SAMTools SNP 18398 18398 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D14%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C36%2C0:50 scaffold41890 SAMTools SNP 18810 18810 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C178%2C17%2C106%3BMQ%3D25%3BFQ%3D219%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold41890 SAMTools SNP 21237 21237 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D630%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C85%2C247%2C75%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 21306 21306 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D607%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C221%2C42%2C248%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C0.45%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 23053 23053 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold41890 SAMTools SNP 23530 23530 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.005%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 23533 23533 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41890 SAMTools SNP 23587 23587 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C8%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C181%2C0:99 scaffold41890 SAMTools SNP 24010 24010 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C16%2C9%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41890 SAMTools SNP 24367 24367 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.4%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C77:44 scaffold41890 SAMTools SNP 24619 24619 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C75%2C0:99 scaffold41890 SAMTools SNP 25036 25036 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold41890 SAMTools SNP 25589 25589 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.17%2C0.00018%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C241:30 scaffold41890 SAMTools SNP 29865 29865 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold41890 SAMTools SNP 30009 30009 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C193:69 scaffold41890 SAMTools SNP 32054 32054 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 32144 32144 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C198:99 scaffold41890 SAMTools SNP 32159 32159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41890 SAMTools SNP 34249 34249 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0014%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41890 SAMTools SNP 34578 34578 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C168:28 scaffold41890 SAMTools SNP 34611 34611 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C15%2C0:27 scaffold41890 SAMTools SNP 34701 34701 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C92:95 scaffold41890 SAMTools SNP 36906 36906 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold41890 SAMTools SNP 39933 39933 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.36%2C5.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41890 SAMTools SNP 52625 52625 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.015%2C0.011%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold41890 SAMTools SNP 52698 52698 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41890 SAMTools SNP 53539 53539 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41890 SAMTools SNP 53608 53608 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41890 SAMTools SNP 54731 54731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 55749 55749 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41890 SAMTools SNP 55763 55763 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41890 SAMTools SNP 56267 56267 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41890 SAMTools SNP 57972 57972 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41890 SAMTools SNP 61471 61471 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold41890 SAMTools SNP 87847 87847 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41890 SAMTools SNP 104997 104997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 105303 105303 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 105335 105335 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41890 SAMTools SNP 116753 116753 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0045%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold41890 SAMTools SNP 119456 119456 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C27%2C0:51 scaffold41896 SAMTools SNP 283 283 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.072%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C32:35 scaffold41896 SAMTools SNP 5775 5775 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.6%2C0.21%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold41896 SAMTools SNP 5970 5970 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C20%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.27%2C0.42%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold41896 SAMTools SNP 6048 6048 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C21%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold41896 SAMTools SNP 7235 7235 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold41896 SAMTools SNP 7574 7574 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0076%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold41896 SAMTools SNP 20552 20552 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41896 SAMTools SNP 21364 21364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41896 SAMTools SNP 21385 21385 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold41896 SAMTools SNP 21424 21424 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold41896 SAMTools SNP 21999 21999 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold41896 SAMTools SNP 22588 22588 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold41896 SAMTools SNP 22613 22613 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.5%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C106:99 scaffold41896 SAMTools SNP 22798 22798 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.3%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C71:74 scaffold41896 SAMTools SNP 22831 22831 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41896 SAMTools SNP 23091 23091 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.12%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold41896 SAMTools SNP 24594 24594 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold41896 SAMTools SNP 24611 24611 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold41896 SAMTools SNP 24762 24762 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C229:34 scaffold41896 SAMTools SNP 24979 24979 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C18%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.026%2C1.7e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41896 SAMTools SNP 35485 35485 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.09%3BPV4%3D0.29%2C3.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C29:32 scaffold41896 SAMTools SNP 36318 36318 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold41896 SAMTools SNP 37005 37005 6.17 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold41896 SAMTools SNP 38114 38114 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41896 SAMTools SNP 38524 38524 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C21%2C0:39 scaffold41896 SAMTools SNP 38584 38584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41896 SAMTools SNP 38595 38595 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41896 SAMTools SNP 38937 38937 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 39104 39104 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C3%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.019%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold41896 SAMTools SNP 39540 39540 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41896 SAMTools SNP 39551 39551 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C28%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0054%2C0.26%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold41896 SAMTools SNP 39576 39576 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C1%2C10%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.35%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C245:99 scaffold41896 SAMTools SNP 39636 39636 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C17%2C8%3BMQ%3D50%3BFQ%3D35%3BPV4%3D5e-05%2C3.3e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41896 SAMTools SNP 39795 39795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41896 SAMTools SNP 39870 39870 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C6.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C171:99 scaffold41896 SAMTools SNP 40119 40119 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C4%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41896 SAMTools SNP 40145 40145 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C33%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.21%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold41896 SAMTools SNP 40154 40154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold41896 SAMTools SNP 40172 40172 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C216:99 scaffold41896 SAMTools SNP 40187 40187 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold41896 SAMTools SNP 40196 40196 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C27%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C253:99 scaffold41896 SAMTools SNP 40719 40719 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C206:99 scaffold41896 SAMTools SNP 40869 40869 40.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold41896 SAMTools SNP 40885 40885 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C72%2C0:99 scaffold41896 SAMTools SNP 41387 41387 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.58%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C231:99 scaffold41896 SAMTools SNP 41428 41428 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.048%2C5.5e-05%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C180:99 scaffold41896 SAMTools SNP 41512 41512 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.17%2C9.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41896 SAMTools SNP 41516 41516 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.13%2C9.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold41896 SAMTools SNP 42224 42224 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold41896 SAMTools SNP 42239 42239 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41896 SAMTools SNP 45789 45789 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C4%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.16%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41896 SAMTools SNP 45849 45849 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C58%2C2%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41896 SAMTools SNP 46990 46990 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41896 SAMTools SNP 47290 47290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41896 SAMTools SNP 53557 53557 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.0086%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41896 SAMTools SNP 54019 54019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41896 SAMTools SNP 54088 54088 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold41896 SAMTools SNP 54409 54409 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C24%2C19%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.82%2C7.7e-44%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold41896 SAMTools SNP 60316 60316 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41896 SAMTools SNP 60327 60327 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41896 SAMTools SNP 61463 61463 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41896 SAMTools SNP 62156 62156 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41896 SAMTools SNP 62162 62162 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41896 SAMTools SNP 62192 62192 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41896 SAMTools SNP 62445 62445 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41896 SAMTools SNP 62622 62622 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41896 SAMTools SNP 73761 73761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5820%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C3506%2C2287%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41896 SAMTools SNP 75415 75415 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7808%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C4655%2C3150%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.57%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41896 SAMTools SNP 80033 80033 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C251%2C0%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold41896 SAMTools SNP 80149 80149 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C134%2C0%2C44%3BMQ%3D48%3BFQ%3D77%3BPV4%3D0.042%2C0.093%2C1%2C2.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41896 SAMTools SNP 80155 80155 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C134%2C5%2C45%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C8.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 80515 80515 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C44%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 81607 81607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C23%2C158%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.071%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 81679 81679 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C176%2C181%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 89718 89718 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold41896 SAMTools SNP 90393 90393 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold41896 SAMTools SNP 90404 90404 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41896 SAMTools SNP 105220 105220 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41896 SAMTools SNP 105253 105253 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41896 SAMTools SNP 105410 105410 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41896 SAMTools SNP 106333 106333 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41896 SAMTools SNP 106712 106712 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41896 SAMTools SNP 106727 106727 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold41896 SAMTools SNP 107245 107245 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold41896 SAMTools SNP 107377 107377 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C46%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 107879 107879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.63%2C0.25%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold41896 SAMTools SNP 107917 107917 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C52%2C20%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D2.1e-11%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold41896 SAMTools SNP 107932 107932 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 108461 108461 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41896 SAMTools SNP 108575 108575 23.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold41896 SAMTools SNP 108620 108620 39.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold41896 SAMTools SNP 108840 108840 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold41896 SAMTools SNP 108877 108877 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold41896 SAMTools SNP 109382 109382 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41896 SAMTools SNP 109760 109760 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41896 SAMTools SNP 110442 110442 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41896 SAMTools SNP 111610 111610 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C50%2C22%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 111639 111639 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C106%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41896 SAMTools SNP 111669 111669 58.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold41896 SAMTools SNP 116682 116682 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C53%2C8%2C48%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.26%2C6e-128%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold41896 SAMTools SNP 122569 122569 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C129%2C0:99 scaffold41896 SAMTools SNP 125531 125531 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold41896 SAMTools SNP 128627 128627 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41896 SAMTools SNP 128669 128669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41896 SAMTools SNP 128771 128771 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C11%2C62%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D0.3%2C5.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C126%2C0:99 scaffold41896 SAMTools SNP 128977 128977 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C79%3BMQ%3D50%3BFQ%3D-218%3BPV4%3D1%2C1.9e-32%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C191%2C0:99 scaffold41898 SAMTools SNP 642 642 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41898 SAMTools SNP 3042 3042 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41898 SAMTools SNP 3222 3222 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41898 SAMTools SNP 25713 25713 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.035%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C234:99 scaffold41898 SAMTools SNP 25744 25744 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.044%2C0.32%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold41898 SAMTools SNP 25759 25759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41898 SAMTools SNP 26063 26063 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41898 SAMTools SNP 41031 41031 8.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C0.016%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold41898 SAMTools SNP 45180 45180 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C4%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41898 SAMTools SNP 45202 45202 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C4%2C6%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.008%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold41898 SAMTools SNP 46349 46349 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold41898 SAMTools SNP 46382 46382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41898 SAMTools SNP 46410 46410 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.3%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41898 SAMTools SNP 51144 51144 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41898 SAMTools SNP 51175 51175 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41898 SAMTools SNP 51200 51200 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41898 SAMTools SNP 51226 51226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41898 SAMTools SNP 75624 75624 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41898 SAMTools SNP 75643 75643 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41898 SAMTools SNP 77809 77809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41898 SAMTools SNP 77835 77835 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold41898 SAMTools SNP 77862 77862 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.14%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C153:99 scaffold41898 SAMTools SNP 86496 86496 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41898 SAMTools SNP 86541 86541 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41898 SAMTools SNP 99828 99828 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41898 SAMTools SNP 99841 99841 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41898 SAMTools SNP 119733 119733 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold41898 SAMTools SNP 119776 119776 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 33551 33551 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C6.3e-07%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold419 SAMTools SNP 41335 41335 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 41350 41350 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 41805 41805 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold419 SAMTools SNP 68051 68051 116 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C33%2C0%2C141%2C15%2C138:63 scaffold419 SAMTools SNP 68267 68267 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C1%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.083%2C3.2e-07%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C30%2C0:57 scaffold419 SAMTools SNP 68401 68401 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 68586 68586 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold419 SAMTools SNP 68604 68604 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold419 SAMTools SNP 68994 68994 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold419 SAMTools SNP 69115 69115 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 69660 69660 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 69676 69676 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 70542 70542 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold419 SAMTools SNP 70573 70573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold419 SAMTools SNP 70834 70834 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold419 SAMTools SNP 71154 71154 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 71187 71187 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold419 SAMTools SNP 73947 73947 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold419 SAMTools SNP 73962 73962 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 74397 74397 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold419 SAMTools SNP 75666 75666 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold419 SAMTools SNP 75805 75805 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold419 SAMTools SNP 76120 76120 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold419 SAMTools SNP 76761 76761 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold419 SAMTools SNP 76774 76774 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold419 SAMTools SNP 76813 76813 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold419 SAMTools SNP 80234 80234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold419 SAMTools SNP 80373 80373 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold419 SAMTools SNP 80828 80828 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold419 SAMTools SNP 80830 80830 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold419 SAMTools SNP 80935 80935 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold419 SAMTools SNP 81199 81199 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 91861 91861 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold419 SAMTools SNP 92270 92270 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C30%2C0:57 scaffold419 SAMTools SNP 94227 94227 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C87%2C0:99 scaffold419 SAMTools SNP 94788 94788 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold419 SAMTools SNP 94813 94813 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C30%2C0:57 scaffold419 SAMTools SNP 94946 94946 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold419 SAMTools SNP 95903 95903 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C69%2C0:99 scaffold419 SAMTools SNP 102414 102414 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C25:28 scaffold419 SAMTools SNP 104583 104583 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold419 SAMTools SNP 108085 108085 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold419 SAMTools SNP 108591 108591 34.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold419 SAMTools SNP 111850 111850 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold419 SAMTools SNP 113407 113407 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 113409 113409 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 113714 113714 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold419 SAMTools SNP 114154 114154 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold419 SAMTools SNP 114496 114496 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold419 SAMTools SNP 114526 114526 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold419 SAMTools SNP 115083 115083 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold419 SAMTools SNP 115101 115101 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold419 SAMTools SNP 115673 115673 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 116132 116132 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold419 SAMTools SNP 116370 116370 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold419 SAMTools SNP 116938 116938 51.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold419 SAMTools SNP 117058 117058 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold419 SAMTools SNP 118839 118839 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold419 SAMTools SNP 121977 121977 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold419 SAMTools SNP 122541 122541 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C18%2C0:33 scaffold419 SAMTools SNP 122613 122613 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 125372 125372 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 125485 125485 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 126187 126187 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 127144 127144 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.015%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold419 SAMTools SNP 127245 127245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold419 SAMTools SNP 128707 128707 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C24%2C0:45 scaffold419 SAMTools SNP 128737 128737 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold419 SAMTools SNP 129187 129187 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold419 SAMTools SNP 129907 129907 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold419 SAMTools SNP 129911 129911 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 130946 130946 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold419 SAMTools SNP 130985 130985 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C18%2C0:33 scaffold419 SAMTools SNP 131418 131418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 131521 131521 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold419 SAMTools SNP 132178 132178 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.39%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold419 SAMTools SNP 132942 132942 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold419 SAMTools SNP 132958 132958 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold419 SAMTools SNP 133720 133720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C56%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold419 SAMTools SNP 134193 134193 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold419 SAMTools SNP 135797 135797 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold419 SAMTools SNP 136320 136320 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold419 SAMTools SNP 136321 136321 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold419 SAMTools SNP 136793 136793 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C144%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.8e-29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold419 SAMTools SNP 136844 136844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 137266 137266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold419 SAMTools SNP 137493 137493 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold419 SAMTools SNP 137774 137774 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 137778 137778 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 138010 138010 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold419 SAMTools SNP 138017 138017 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.077%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold419 SAMTools SNP 141084 141084 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold419 SAMTools SNP 144039 144039 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C264%2C13%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 144055 144055 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 147325 147325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold419 SAMTools SNP 148559 148559 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 149989 149989 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold419 SAMTools SNP 150022 150022 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold419 SAMTools SNP 150645 150645 18.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold419 SAMTools SNP 152595 152595 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 155117 155117 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 155748 155748 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 158634 158634 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 158656 158656 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 159883 159883 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 161814 161814 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold419 SAMTools SNP 162166 162166 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold419 SAMTools SNP 162181 162181 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 162208 162208 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold419 SAMTools SNP 162480 162480 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 163135 163135 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 164771 164771 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold419 SAMTools SNP 164772 164772 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 165287 165287 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold419 SAMTools SNP 165311 165311 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold419 SAMTools SNP 165848 165848 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold419 SAMTools SNP 165936 165936 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 167716 167716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold419 SAMTools SNP 168498 168498 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold419 SAMTools SNP 168954 168954 92 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C72%2C0:99 scaffold419 SAMTools SNP 171219 171219 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold419 SAMTools SNP 177271 177271 66.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold419 SAMTools SNP 177741 177741 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 184594 184594 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 185124 185124 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 186326 186326 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 186332 186332 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 186414 186414 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 189453 189453 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C10%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00048%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold419 SAMTools SNP 189544 189544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold419 SAMTools SNP 191088 191088 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold419 SAMTools SNP 191167 191167 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold419 SAMTools SNP 191312 191312 63.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold419 SAMTools SNP 191405 191405 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 191456 191456 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold419 SAMTools SNP 192710 192710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C13%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold419 SAMTools SNP 192842 192842 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C45%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold419 SAMTools SNP 196943 196943 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold419 SAMTools SNP 197170 197170 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold419 SAMTools SNP 197364 197364 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 204679 204679 124 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C78%2C0:99 scaffold419 SAMTools SNP 205494 205494 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold419 SAMTools SNP 206230 206230 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold419 SAMTools SNP 206242 206242 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C229:37 scaffold419 SAMTools SNP 206598 206598 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 210451 210451 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C67%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold419 SAMTools SNP 212081 212081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 214019 214019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold419 SAMTools SNP 214040 214040 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 214082 214082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold419 SAMTools SNP 214819 214819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 214840 214840 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C2%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold419 SAMTools SNP 215314 215314 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold419 SAMTools SNP 215827 215827 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold419 SAMTools SNP 215842 215842 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold419 SAMTools SNP 217084 217084 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 217199 217199 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold419 SAMTools SNP 219558 219558 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold419 SAMTools SNP 219619 219619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold419 SAMTools SNP 223142 223142 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.42%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold419 SAMTools SNP 223144 223144 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold419 SAMTools SNP 224060 224060 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold419 SAMTools SNP 226580 226580 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C0.0032%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold419 SAMTools SNP 228452 228452 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold419 SAMTools SNP 228453 228453 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold419 SAMTools SNP 241405 241405 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold419 SAMTools SNP 241900 241900 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C36%2C0:69 scaffold419 SAMTools SNP 242278 242278 14.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold419 SAMTools SNP 242427 242427 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C42%2C0:81 scaffold419 SAMTools SNP 242590 242590 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C22%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C160%2C0:99 scaffold419 SAMTools SNP 247479 247479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 247492 247492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 251315 251315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold419 SAMTools SNP 251376 251376 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold419 SAMTools SNP 255111 255111 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C255%2C0:99 scaffold419 SAMTools SNP 255588 255588 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C130%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.13%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 255596 255596 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 255882 255882 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 255930 255930 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold419 SAMTools SNP 256491 256491 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C184%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 257549 257549 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold419 SAMTools SNP 258142 258142 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C99%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 258168 258168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C36%2C8%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C2e-11%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 258399 258399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D663%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C559%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 258486 258486 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D701%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C161%2C306%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 258689 258689 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C47%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.25%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 259430 259430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C183%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 259654 259654 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold419 SAMTools SNP 261370 261370 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C255%2C0:99 scaffold419 SAMTools SNP 262421 262421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C70%2C427%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C1%2C0.46%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 262501 262501 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C0.0056%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C6%2C0:10 scaffold419 SAMTools SNP 262589 262589 36.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0169%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C14:17 scaffold419 SAMTools SNP 269847 269847 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold419 SAMTools SNP 269927 269927 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold419 SAMTools SNP 270540 270540 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold419 SAMTools SNP 277372 277372 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold419 SAMTools SNP 293275 293275 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 293382 293382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 295858 295858 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold419 SAMTools SNP 295859 295859 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 301980 301980 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 302007 302007 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C58%2C0%2C12%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.59%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold419 SAMTools SNP 303800 303800 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.009%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C38:41 scaffold419 SAMTools SNP 304540 304540 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 305525 305525 11.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold419 SAMTools SNP 306881 306881 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold419 SAMTools SNP 306921 306921 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold419 SAMTools SNP 308497 308497 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold419 SAMTools SNP 308565 308565 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C33%2C0:63 scaffold419 SAMTools SNP 310319 310319 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold419 SAMTools SNP 316721 316721 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C64%2C69%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.49%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 320914 320914 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D109%3BPV4%3D3.8e-07%2C1.7e-10%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold419 SAMTools SNP 322455 322455 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold419 SAMTools SNP 326224 326224 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold419 SAMTools SNP 327351 327351 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold419 SAMTools SNP 327369 327369 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C41%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold419 SAMTools SNP 332759 332759 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C13%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold419 SAMTools SNP 333024 333024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 335016 335016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C26%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold419 SAMTools SNP 345105 345105 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 350432 350432 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C142%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 350458 350458 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C0%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.31%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold419 SAMTools SNP 353493 353493 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D8.3e-06%2C2.4e-12%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold419 SAMTools SNP 362678 362678 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold419 SAMTools SNP 369234 369234 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 386595 386595 6.98 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold419 SAMTools SNP 398612 398612 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 426821 426821 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold419 SAMTools SNP 441595 441595 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C64%2C0:99 scaffold419 SAMTools SNP 441596 441596 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.35%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C225:99 scaffold419 SAMTools SNP 443595 443595 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.16%2C0.13%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold419 SAMTools SNP 443601 443601 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.55%2C0.049%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold419 SAMTools SNP 443748 443748 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C71:74 scaffold419 SAMTools SNP 444484 444484 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold419 SAMTools SNP 444496 444496 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold419 SAMTools SNP 444529 444529 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C144:47 scaffold419 SAMTools SNP 445181 445181 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.077%2C4.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C243:77 scaffold419 SAMTools SNP 446267 446267 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.074%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold419 SAMTools SNP 446297 446297 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C249%2C165:99 scaffold419 SAMTools SNP 446318 446318 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.58%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold419 SAMTools SNP 446384 446384 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C32%2C25%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 446816 446816 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C53%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.069%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold419 SAMTools SNP 446834 446834 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 447292 447292 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C255%2C0:99 scaffold419 SAMTools SNP 447558 447558 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold419 SAMTools SNP 450920 450920 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold419 SAMTools SNP 450926 450926 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C132%2C0:99 scaffold419 SAMTools SNP 451995 451995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C41%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold419 SAMTools SNP 452045 452045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold419 SAMTools SNP 452096 452096 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold419 SAMTools SNP 453766 453766 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold419 SAMTools SNP 454104 454104 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold419 SAMTools SNP 455722 455722 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold419 SAMTools SNP 456785 456785 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 456794 456794 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C6%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.63%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold419 SAMTools SNP 457836 457836 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D33%3BFQ%3D6.2%3BPV4%3D0.21%2C0.48%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C209:31 scaffold419 SAMTools SNP 457962 457962 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D29%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C36%2C0:68 scaffold419 SAMTools SNP 458272 458272 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold419 SAMTools SNP 458305 458305 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold419 SAMTools SNP 460401 460401 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold419 SAMTools SNP 460425 460425 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 460446 460446 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 461008 461008 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold419 SAMTools SNP 461143 461143 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold419 SAMTools SNP 507887 507887 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold419 SAMTools SNP 520337 520337 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D634%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D387%2C69%2C171%2C7%3BMQ%3D50%3BFQ%3D208%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold419 SAMTools SNP 524806 524806 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C130%2C25%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C2.5e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 525140 525140 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C210:60 scaffold419 SAMTools SNP 527257 527257 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold419 SAMTools SNP 527270 527270 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C236:99 scaffold419 SAMTools SNP 527285 527285 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.13%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold419 SAMTools SNP 527392 527392 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold419 SAMTools SNP 529294 529294 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold419 SAMTools SNP 529488 529488 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold419 SAMTools SNP 529859 529859 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C10%2C29%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.31%2C1.2e-33%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold419 SAMTools SNP 530111 530111 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold419 SAMTools SNP 530220 530220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold419 SAMTools SNP 530361 530361 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C45%2C0:87 scaffold419 SAMTools SNP 530591 530591 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold419 SAMTools SNP 530702 530702 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold419 SAMTools SNP 531022 531022 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 531027 531027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 531096 531096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C16%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold419 SAMTools SNP 531145 531145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 531560 531560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C52%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold419 SAMTools SNP 531574 531574 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold419 SAMTools SNP 532364 532364 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C10%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.26%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold419 SAMTools SNP 532422 532422 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold419 SAMTools SNP 533523 533523 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C1%2C56%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold419 SAMTools SNP 533543 533543 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C0%2C27%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold419 SAMTools SNP 563950 563950 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C13%3BMQ%3D49%3BFQ%3D58%3BPV4%3D0.24%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C85:88 scaffold419 SAMTools SNP 570352 570352 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C4%2C1%3BMQ%3D47%3BFQ%3D71%3BPV4%3D0.0026%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold419 SAMTools SNP 570358 570358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D47%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold419 SAMTools SNP 614539 614539 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C37:33 scaffold419 SAMTools SNP 618975 618975 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D0.14%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C125:99 scaffold419 SAMTools SNP 618984 618984 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C0.24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C224:99 scaffold419 SAMTools SNP 620681 620681 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold419 SAMTools SNP 620946 620946 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold419 SAMTools SNP 626012 626012 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.7e-06%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C191:34 scaffold419 SAMTools SNP 677905 677905 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold419 SAMTools SNP 678870 678870 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 681604 681604 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold419 SAMTools SNP 681870 681870 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold419 SAMTools SNP 707943 707943 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 707964 707964 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 708226 708226 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold419 SAMTools SNP 708418 708418 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C31:34 scaffold419 SAMTools SNP 716576 716576 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C10%3BMQ%3D47%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold419 SAMTools SNP 716823 716823 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold419 SAMTools SNP 716826 716826 7.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold419 SAMTools SNP 719698 719698 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.47%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold419 SAMTools SNP 719715 719715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold419 SAMTools SNP 732360 732360 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold419 SAMTools SNP 736430 736430 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C3%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold419 SAMTools SNP 741292 741292 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C8%2C17%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.75%2C7.4e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold419 SAMTools SNP 741886 741886 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C58%2C6%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C8.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 741892 741892 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C46%2C13%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1.1e-19%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 742891 742891 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.027%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 742900 742900 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C0.0023%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold419 SAMTools SNP 742939 742939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold419 SAMTools SNP 742954 742954 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 743329 743329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C20%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold419 SAMTools SNP 743654 743654 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C3%2C105%2C43%3BMQ%3D50%3BFQ%3D-235%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold419 SAMTools SNP 743681 743681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 745178 745178 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C85%2C26%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 745994 745994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C89%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 746012 746012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C23%2C18%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 746343 746343 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C228%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 746448 746448 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold419 SAMTools SNP 746502 746502 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C160%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 746707 746707 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C123%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 746737 746737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C22%2C95%3BMQ%3D50%3BFQ%3D180%3BPV4%3D4.6e-18%2C4.4e-07%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold419 SAMTools SNP 746961 746961 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C54%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold419 SAMTools SNP 746998 746998 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 747071 747071 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C54%2C0:99 scaffold419 SAMTools SNP 747353 747353 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold419 SAMTools SNP 747358 747358 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold419 SAMTools SNP 747398 747398 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold419 SAMTools SNP 747525 747525 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold419 SAMTools SNP 747567 747567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold419 SAMTools SNP 747597 747597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C14%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold419 SAMTools SNP 747763 747763 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold419 SAMTools SNP 750745 750745 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold419 SAMTools SNP 750772 750772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 750790 750790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold419 SAMTools SNP 751100 751100 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C8%2C17%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.44%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold419 SAMTools SNP 751120 751120 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C8%2C17%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold419 SAMTools SNP 751190 751190 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C47%2C18%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.27%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold419 SAMTools SNP 751217 751217 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 752461 752461 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.34%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold419 SAMTools SNP 753461 753461 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold419 SAMTools SNP 753494 753494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 753509 753509 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C97:99 scaffold419 SAMTools SNP 753548 753548 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C31%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold419 SAMTools SNP 753569 753569 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C2%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.69%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold419 SAMTools SNP 753762 753762 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold419 SAMTools SNP 753783 753783 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 755189 755189 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold419 SAMTools SNP 756816 756816 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.1%2C0.0034%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold419 SAMTools SNP 756828 756828 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold419 SAMTools SNP 756843 756843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C15%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold419 SAMTools SNP 757149 757149 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D6.8e-08%2C1%2C1%2C3.9e-32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold419 SAMTools SNP 757173 757173 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D6.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold419 SAMTools SNP 757341 757341 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C45%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C0.44%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 757350 757350 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C13%2C21%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.12%2C4.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold419 SAMTools SNP 758732 758732 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold419 SAMTools SNP 758796 758796 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold419 SAMTools SNP 759245 759245 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.0065%2C0.097%2C5.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 759792 759792 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 759829 759829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C36%2C80%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 761242 761242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C55%2C12%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.39%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 761317 761317 18 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold419 SAMTools SNP 761332 761332 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold419 SAMTools SNP 761377 761377 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.0053%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold419 SAMTools SNP 761440 761440 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.4%2C0.16%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold419 SAMTools SNP 761650 761650 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C12%2C17%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold419 SAMTools SNP 761653 761653 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C11%2C17%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold419 SAMTools SNP 761784 761784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C146%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold419 SAMTools SNP 761820 761820 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C13%2C11%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold419 SAMTools SNP 761847 761847 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C63%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 761853 761853 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C24%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C9.4e-05%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 761865 761865 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C7%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-12%2C0.0055%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 762258 762258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0013%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold419 SAMTools SNP 763805 763805 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C16%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.064%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold419 SAMTools SNP 764213 764213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 764500 764500 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C6%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 764512 764512 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C68%2C2%2C19%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.65%2C0.024%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold419 SAMTools SNP 764611 764611 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C72%2C0:99 scaffold419 SAMTools SNP 764902 764902 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 764904 764904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold419 SAMTools SNP 765086 765086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C23%2C2%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.031%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 765106 765106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C79%2C14%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D1%2C0.25%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold419 SAMTools SNP 765373 765373 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 765704 765704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C10%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 766993 766993 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C27%2C0:51 scaffold419 SAMTools SNP 767611 767611 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold419 SAMTools SNP 768698 768698 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 771458 771458 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 771479 771479 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold419 SAMTools SNP 772365 772365 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold419 SAMTools SNP 784243 784243 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold419 SAMTools SNP 788831 788831 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold419 SAMTools SNP 805873 805873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C33%2C72%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 806050 806050 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D260%2C35%2C190%2C41%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.062%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold419 SAMTools SNP 806313 806313 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1877%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C1784%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 806556 806556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1659%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C12%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D1%2C0.0013%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold419 SAMTools SNP 806580 806580 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1142%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C58%2C0:99 scaffold419 SAMTools SNP 806607 806607 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1400%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C724%2C27%2C447%3BMQ%3D50%3BFQ%3D126%3BPV4%3D3.6e-08%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold419 SAMTools SNP 806749 806749 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1.7e-06%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold419 SAMTools SNP 807036 807036 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C249%2C24%2C93%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.68%2C2e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold419 SAMTools SNP 809006 809006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1794%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D598%2C378%2C447%2C298%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 809124 809124 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1968%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C650%2C115%2C582%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 810983 810983 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C31%2C97%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00059%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 811385 811385 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D614%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C239%2C72%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 813602 813602 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold419 SAMTools SNP 815092 815092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 815493 815493 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C84:43 scaffold419 SAMTools SNP 818037 818037 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold419 SAMTools SNP 826191 826191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C49%2C45%3BMQ%3D50%3BFQ%3D-185%3BPV4%3D0.25%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C158%2C0:99 scaffold419 SAMTools SNP 827419 827419 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C74%2C23%2C51%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.15%2C3.6e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold419 SAMTools SNP 827518 827518 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C26%2C23%2C31%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.067%2C3.8e-62%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold419 SAMTools SNP 827532 827532 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.00033%2C0.071%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold419 SAMTools SNP 827833 827833 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C0%2C16%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold419 SAMTools SNP 827983 827983 39.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold419 SAMTools SNP 946463 946463 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 951456 951456 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold419 SAMTools SNP 952046 952046 23.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold419 SAMTools SNP 952050 952050 93.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold419 SAMTools SNP 952088 952088 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold419 SAMTools SNP 952820 952820 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.065%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold419 SAMTools SNP 953686 953686 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold419 SAMTools SNP 953742 953742 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold419 SAMTools SNP 954980 954980 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C71:74 scaffold419 SAMTools SNP 955016 955016 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 955100 955100 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C115:99 scaffold419 SAMTools SNP 955123 955123 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold419 SAMTools SNP 956071 956071 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold419 SAMTools SNP 956387 956387 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold419 SAMTools SNP 956415 956415 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 956463 956463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold419 SAMTools SNP 958417 958417 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold419 SAMTools SNP 958949 958949 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold419 SAMTools SNP 958961 958961 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold419 SAMTools SNP 959261 959261 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold419 SAMTools SNP 959282 959282 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold419 SAMTools SNP 960349 960349 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C0%2C38%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.099%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold419 SAMTools SNP 960376 960376 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C21%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.55%2C0.1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold419 SAMTools SNP 960472 960472 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold419 SAMTools SNP 960505 960505 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold419 SAMTools SNP 962125 962125 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold419 SAMTools SNP 966493 966493 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 985114 985114 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 985143 985143 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold419 SAMTools SNP 985750 985750 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 986257 986257 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold419 SAMTools SNP 986832 986832 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold419 SAMTools SNP 986922 986922 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.035%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold419 SAMTools SNP 987246 987246 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold419 SAMTools SNP 987285 987285 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold419 SAMTools SNP 989421 989421 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 989436 989436 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold419 SAMTools SNP 989446 989446 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold419 SAMTools SNP 989475 989475 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold419 SAMTools SNP 992600 992600 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold419 SAMTools SNP 992779 992779 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C108%2C0:99 scaffold419 SAMTools SNP 997648 997648 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 997897 997897 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C104:99 scaffold419 SAMTools SNP 999354 999354 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 999690 999690 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold419 SAMTools SNP 1000920 1000920 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold419 SAMTools SNP 1002940 1002940 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C45%2C0:76 scaffold419 SAMTools SNP 1003158 1003158 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold419 SAMTools SNP 1004828 1004828 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1005184 1005184 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1006155 1006155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1008913 1008913 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C25%2C22%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.83%2C3.9e-59%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold419 SAMTools SNP 1009014 1009014 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold419 SAMTools SNP 1011921 1011921 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 1013629 1013629 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C75%2C0:99 scaffold419 SAMTools SNP 1023910 1023910 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold419 SAMTools SNP 1023950 1023950 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold419 SAMTools SNP 1027984 1027984 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C156:28 scaffold419 SAMTools SNP 1033407 1033407 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C221:99 scaffold419 SAMTools SNP 1033468 1033468 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.023%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1033840 1033840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold419 SAMTools SNP 1035234 1035234 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.17%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold419 SAMTools SNP 1035258 1035258 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.43%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold419 SAMTools SNP 1035263 1035263 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.04%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold419 SAMTools SNP 1035264 1035264 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold419 SAMTools SNP 1035901 1035901 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.48%2C0.0024%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold419 SAMTools SNP 1035936 1035936 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.18%2C0.037%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold419 SAMTools SNP 1036468 1036468 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold419 SAMTools SNP 1037101 1037101 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1037335 1037335 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.01%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold419 SAMTools SNP 1038482 1038482 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1038764 1038764 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold419 SAMTools SNP 1038767 1038767 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.23%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold419 SAMTools SNP 1039112 1039112 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold419 SAMTools SNP 1039196 1039196 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.28%2C1%2C4.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold419 SAMTools SNP 1039669 1039669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.091%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold419 SAMTools SNP 1039693 1039693 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C0.14%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold419 SAMTools SNP 1039903 1039903 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.37%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold419 SAMTools SNP 1039920 1039920 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold419 SAMTools SNP 1039938 1039938 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C152:99 scaffold419 SAMTools SNP 1073615 1073615 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1074621 1074621 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.02%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold419 SAMTools SNP 1076777 1076777 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C8%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0088%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold419 SAMTools SNP 1076888 1076888 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1076903 1076903 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold419 SAMTools SNP 1076960 1076960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold419 SAMTools SNP 1077397 1077397 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C2%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold419 SAMTools SNP 1077730 1077730 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1080466 1080466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold419 SAMTools SNP 1080843 1080843 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold419 SAMTools SNP 1081570 1081570 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D4%2C2%2C72%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.12%2C0.14%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold419 SAMTools SNP 1081589 1081589 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C51%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.17%2C0.12%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C44:47 scaffold419 SAMTools SNP 1081606 1081606 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold419 SAMTools SNP 1082084 1082084 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1082285 1082285 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1082390 1082390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold419 SAMTools SNP 1082414 1082414 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1082785 1082785 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold419 SAMTools SNP 1082797 1082797 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold419 SAMTools SNP 1084576 1084576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 1084592 1084592 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C6.5e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold419 SAMTools SNP 1084636 1084636 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C143:99 scaffold419 SAMTools SNP 1085552 1085552 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.082%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold419 SAMTools SNP 1085565 1085565 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold419 SAMTools SNP 1085595 1085595 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1085746 1085746 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1085794 1085794 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1085905 1085905 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1086583 1086583 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C22%2C12%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.012%2C0.00028%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold419 SAMTools SNP 1087581 1087581 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C45%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold419 SAMTools SNP 1087623 1087623 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold419 SAMTools SNP 1088032 1088032 120 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C102%2C185%2C0%2C176:33 scaffold419 SAMTools SNP 1088298 1088298 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1088335 1088335 17.1 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold419 SAMTools SNP 1131163 1131163 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1138081 1138081 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1138089 1138089 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1138860 1138860 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold419 SAMTools SNP 1139081 1139081 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold419 SAMTools SNP 1140069 1140069 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold419 SAMTools SNP 1140113 1140113 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 1152861 1152861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1154979 1154979 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.015%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C179:42 scaffold419 SAMTools SNP 1156012 1156012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold419 SAMTools SNP 1157983 1157983 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0063%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C201:99 scaffold419 SAMTools SNP 1158181 1158181 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 1158289 1158289 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold419 SAMTools SNP 1158859 1158859 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold419 SAMTools SNP 1159536 1159536 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 1162005 1162005 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 1162248 1162248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold419 SAMTools SNP 1162950 1162950 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C224:99 scaffold419 SAMTools SNP 1163139 1163139 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold419 SAMTools SNP 1163928 1163928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold419 SAMTools SNP 1164394 1164394 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold419 SAMTools SNP 1164846 1164846 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold419 SAMTools SNP 1165879 1165879 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold419 SAMTools SNP 1165919 1165919 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold419 SAMTools SNP 1169038 1169038 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold419 SAMTools SNP 1169072 1169072 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold419 SAMTools SNP 1169825 1169825 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.11%2C0.35%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold419 SAMTools SNP 1169828 1169828 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.21%2C0.24%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold419 SAMTools SNP 1170186 1170186 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold419 SAMTools SNP 1170658 1170658 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold419 SAMTools SNP 1171462 1171462 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold419 SAMTools SNP 1178364 1178364 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold419 SAMTools SNP 1178428 1178428 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold419 SAMTools SNP 1178892 1178892 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-07%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1179381 1179381 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1179392 1179392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1179862 1179862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold419 SAMTools SNP 1180050 1180050 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold419 SAMTools SNP 1180053 1180053 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold419 SAMTools SNP 1180069 1180069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold419 SAMTools SNP 1180117 1180117 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold419 SAMTools SNP 1180126 1180126 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold419 SAMTools SNP 1182803 1182803 81.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold419 SAMTools SNP 1186638 1186638 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold419 SAMTools SNP 1186652 1186652 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold419 SAMTools SNP 1189594 1189594 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.5%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold419 SAMTools SNP 1189649 1189649 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.67%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold419 SAMTools SNP 1190869 1190869 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold419 SAMTools SNP 1191557 1191557 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold419 SAMTools SNP 1191771 1191771 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1192090 1192090 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold419 SAMTools SNP 1192579 1192579 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold419 SAMTools SNP 1192735 1192735 40.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold419 SAMTools SNP 1194987 1194987 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1195002 1195002 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1197530 1197530 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C88%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1198345 1198345 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.51%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold419 SAMTools SNP 1198753 1198753 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C35:38 scaffold419 SAMTools SNP 1199059 1199059 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.2%2C0.39%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C28:31 scaffold419 SAMTools SNP 1202786 1202786 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold419 SAMTools SNP 1203961 1203961 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C24%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C160:99 scaffold419 SAMTools SNP 1220884 1220884 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.18%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold419 SAMTools SNP 1221476 1221476 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C237:99 scaffold419 SAMTools SNP 1224640 1224640 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.018%2C0.077%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold419 SAMTools SNP 1224653 1224653 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold419 SAMTools SNP 1224976 1224976 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold419 SAMTools SNP 1225785 1225785 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold419 SAMTools SNP 1226547 1226547 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C244:99 scaffold419 SAMTools SNP 1226555 1226555 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold419 SAMTools SNP 1226930 1226930 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.058%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold419 SAMTools SNP 1227815 1227815 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C31%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C6e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold419 SAMTools SNP 1233620 1233620 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold419 SAMTools SNP 1234153 1234153 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C17%2C46%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1246300 1246300 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold419 SAMTools SNP 1246712 1246712 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold419 SAMTools SNP 1246740 1246740 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.098%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold419 SAMTools SNP 1246778 1246778 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.61%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold419 SAMTools SNP 1247464 1247464 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold419 SAMTools SNP 1248231 1248231 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold419 SAMTools SNP 1253308 1253308 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold419 SAMTools SNP 1259452 1259452 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.67%2C2.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold419 SAMTools SNP 1261662 1261662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold419 SAMTools SNP 1262442 1262442 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C54%2C0:99 scaffold419 SAMTools SNP 1262492 1262492 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D2%2C3%2C37%2C1%3BMQ%3D45%3BFQ%3D-6.18%3BPV4%3D0.0031%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C22:25 scaffold419 SAMTools SNP 1262782 1262782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold419 SAMTools SNP 1262794 1262794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C64%3BMQ%3D48%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold419 SAMTools SNP 1262878 1262878 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C213:57 scaffold419 SAMTools SNP 1263758 1263758 95.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold419 SAMTools SNP 1264383 1264383 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C4%2C43%3BMQ%3D46%3BFQ%3D112%3BPV4%3D0.29%2C7.4e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C198:99 scaffold419 SAMTools SNP 1265890 1265890 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D3%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C129%2C0:78 scaffold419 SAMTools SNP 1294651 1294651 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold419 SAMTools SNP 1296547 1296547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C32%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D1%2C0.024%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold419 SAMTools SNP 1372694 1372694 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1373107 1373107 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold419 SAMTools SNP 1392203 1392203 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold419 SAMTools SNP 1392204 1392204 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold419 SAMTools SNP 1410342 1410342 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold419 SAMTools SNP 1410352 1410352 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold419 SAMTools SNP 1411042 1411042 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold419 SAMTools SNP 1413755 1413755 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold419 SAMTools SNP 1426169 1426169 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold419 SAMTools SNP 1427585 1427585 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1427801 1427801 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1452982 1452982 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold419 SAMTools SNP 1453001 1453001 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold419 SAMTools SNP 1486639 1486639 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold419 SAMTools SNP 1487883 1487883 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold419 SAMTools SNP 1487904 1487904 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1488684 1488684 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold419 SAMTools SNP 1488694 1488694 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold419 SAMTools SNP 1488759 1488759 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold419 SAMTools SNP 1492432 1492432 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold419 SAMTools SNP 1495157 1495157 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C158:89 scaffold419 SAMTools SNP 1495497 1495497 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold419 SAMTools SNP 1495521 1495521 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.41%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C240:99 scaffold419 SAMTools SNP 1496238 1496238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1496256 1496256 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.066%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold419 SAMTools SNP 1497254 1497254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold419 SAMTools SNP 1497576 1497576 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.0014%2C0.069%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold419 SAMTools SNP 1497866 1497866 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.048%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold419 SAMTools SNP 1498533 1498533 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.44%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C248:99 scaffold419 SAMTools SNP 1499846 1499846 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1500216 1500216 122 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C43%2C102%2C92%2C0%2C154:62 scaffold419 SAMTools SNP 1507692 1507692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold419 SAMTools SNP 1507756 1507756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold419 SAMTools SNP 1508037 1508037 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C311%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1508302 1508302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1508371 1508371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C80%2C176%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1509372 1509372 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D652%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C3%2C283%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-24%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1509423 1509423 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D340%2C166%2C53%2C184%3BMQ%3D50%3BFQ%3D126%3BPV4%3D6e-31%2C2.1e-287%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold419 SAMTools SNP 1509459 1509459 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D811%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D236%2C284%2C62%2C228%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-12%2C5.7e-172%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1509540 1509540 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C30%2C0:57 scaffold419 SAMTools SNP 1511232 1511232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D723%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C579%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1511283 1511283 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D758%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C391%2C51%2C220%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1511304 1511304 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D816%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C586%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1511537 1511537 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C76%2C41%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00078%2C3.1e-18%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1511603 1511603 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C185%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1512060 1512060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C315%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1512102 1512102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1512159 1512159 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold419 SAMTools SNP 1512186 1512186 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold419 SAMTools SNP 1512213 1512213 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C0%2C6%3BMQ%3D48%3BFQ%3D44%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold419 SAMTools SNP 1512617 1512617 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C7%2C14%3BMQ%3D44%3BFQ%3D-72%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold419 SAMTools SNP 1512650 1512650 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D33%3BFQ%3D-30%3BPV4%3D0.048%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C3%2C0:6 scaffold419 SAMTools SNP 1512731 1512731 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold419 SAMTools SNP 1512805 1512805 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C89%3BMQ%3D42%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1513412 1513412 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold419 SAMTools SNP 1515846 1515846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold419 SAMTools SNP 1516046 1516046 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1516047 1516047 28.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold419 SAMTools SNP 1516222 1516222 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C56%3BMQ%3D43%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C193%2C0:99 scaffold419 SAMTools SNP 1516527 1516527 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D16%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C117%2C0:99 scaffold419 SAMTools SNP 1516671 1516671 79 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C19%3BMQ%3D13%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C255%2C0%2C61%2C194%2C55:99 scaffold419 SAMTools SNP 1516701 1516701 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C43%3BMQ%3D36%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1517394 1517394 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D356%2C153%2C218%2C0%3BMQ%3D47%3BFQ%3D59%3BPV4%3D6.4e-28%2C1.7e-66%2C1%2C3.8e-41;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold419 SAMTools SNP 1517488 1517488 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D622%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C281%2C50%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D4e-34%2C1%2C1%2C6.2e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold419 SAMTools SNP 1517530 1517530 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C98%2C12%2C65%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1.6e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1518165 1518165 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C65%3BMQ%3D43%3BFQ%3D-176%3BPV4%3D1%2C0.34%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C0:99 scaffold419 SAMTools SNP 1518654 1518654 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C13%2C11%3BMQ%3D39%3BFQ%3D74%3BPV4%3D0.0089%2C1%2C1.1e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C249:99 scaffold419 SAMTools SNP 1528861 1528861 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C1%2C76%2C19%3BMQ%3D15%3BFQ%3D25%3BPV4%3D4.1e-07%2C4.4e-62%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C52:55 scaffold419 SAMTools SNP 1528875 1528875 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D126%2C3%2C4%2C14%3BMQ%3D18%3BFQ%3D-137%3BPV4%3D1.4e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C110%2C0:99 scaffold419 SAMTools SNP 1530689 1530689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C56%2C25%3BMQ%3D41%3BFQ%3D-208%3BPV4%3D0.32%2C1%2C0.077%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold419 SAMTools SNP 1531927 1531927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C4%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1531938 1531938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C147%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1531949 1531949 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C103%2C0%2C46%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C2.6e-21%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold419 SAMTools SNP 1541275 1541275 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D38%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C42%2C0:69 scaffold419 SAMTools SNP 1544016 1544016 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D796%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C425%2C30%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold419 SAMTools SNP 1548442 1548442 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1550568 1550568 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold419 SAMTools SNP 1550588 1550588 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold419 SAMTools SNP 1550632 1550632 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C276%2C1%2C194%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1550708 1550708 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1550837 1550837 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.47%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold419 SAMTools SNP 1551480 1551480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1553431 1553431 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold419 SAMTools SNP 1553935 1553935 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.033%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold419 SAMTools SNP 1553936 1553936 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold419 SAMTools SNP 1554003 1554003 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1554094 1554094 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1554123 1554123 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold419 SAMTools SNP 1554522 1554522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C11%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold419 SAMTools SNP 1557896 1557896 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C20%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold419 SAMTools SNP 1558065 1558065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold419 SAMTools SNP 1558825 1558825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold419 SAMTools SNP 1558855 1558855 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold419 SAMTools SNP 1560876 1560876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold419 SAMTools SNP 1560901 1560901 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0063%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold419 SAMTools SNP 1560915 1560915 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold419 SAMTools SNP 1562864 1562864 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1562869 1562869 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold419 SAMTools SNP 1562878 1562878 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold419 SAMTools SNP 1563094 1563094 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 1563175 1563175 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 1563178 1563178 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold419 SAMTools SNP 1563644 1563644 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold419 SAMTools SNP 1563881 1563881 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold419 SAMTools SNP 1563920 1563920 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1564442 1564442 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold419 SAMTools SNP 1564704 1564704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold419 SAMTools SNP 1564770 1564770 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold419 SAMTools SNP 1565001 1565001 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C7%2C1%3BMQ%3D47%3BFQ%3D100%3BPV4%3D1%2C0.093%2C0.06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold419 SAMTools SNP 1565109 1565109 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D46%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold419 SAMTools SNP 1565157 1565157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C19%3BMQ%3D42%3BFQ%3D-88%3BPV4%3D0.24%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold419 SAMTools SNP 1566291 1566291 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold419 SAMTools SNP 1567190 1567190 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.36%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C146:43 scaffold419 SAMTools SNP 1569890 1569890 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 1569920 1569920 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C245:99 scaffold419 SAMTools SNP 1570737 1570737 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C7%3BMQ%3D46%3BFQ%3D76%3BPV4%3D0.13%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold419 SAMTools SNP 1570939 1570939 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold419 SAMTools SNP 1570960 1570960 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold419 SAMTools SNP 1576007 1576007 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold419 SAMTools SNP 1576548 1576548 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold419 SAMTools SNP 1591274 1591274 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold419 SAMTools SNP 1591541 1591541 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C15%2C0:27 scaffold419 SAMTools SNP 1591550 1591550 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold419 SAMTools SNP 1591576 1591576 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0021%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C185:42 scaffold419 SAMTools SNP 1595974 1595974 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1596025 1596025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1596689 1596689 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1597031 1597031 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1597987 1597987 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold419 SAMTools SNP 1597999 1597999 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold419 SAMTools SNP 1598179 1598179 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C245:99 scaffold419 SAMTools SNP 1598374 1598374 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold419 SAMTools SNP 1598410 1598410 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1598413 1598413 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1600239 1600239 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold419 SAMTools SNP 1600315 1600315 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.009%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold419 SAMTools SNP 1600484 1600484 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold419 SAMTools SNP 1600499 1600499 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold419 SAMTools SNP 1600979 1600979 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold419 SAMTools SNP 1600997 1600997 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold419 SAMTools SNP 1601018 1601018 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1601051 1601051 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1601596 1601596 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 1601839 1601839 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1601893 1601893 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1602364 1602364 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1602454 1602454 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1602475 1602475 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 1603217 1603217 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold419 SAMTools SNP 1603223 1603223 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold419 SAMTools SNP 1603253 1603253 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold419 SAMTools SNP 1604957 1604957 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold419 SAMTools SNP 1604995 1604995 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold419 SAMTools SNP 1629068 1629068 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold419 SAMTools SNP 1629084 1629084 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 1630056 1630056 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 1630068 1630068 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 1630572 1630572 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold419 SAMTools SNP 1630724 1630724 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1631369 1631369 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 1631390 1631390 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 1631476 1631476 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold419 SAMTools SNP 1633214 1633214 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold419 SAMTools SNP 1633404 1633404 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold419 SAMTools SNP 1644721 1644721 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C46:49 scaffold419 SAMTools SNP 1644878 1644878 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D42%3BFQ%3D5.47%3BPV4%3D0.033%2C1%2C0.06%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold419 SAMTools SNP 1645501 1645501 21.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold419 SAMTools SNP 1646377 1646377 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1646433 1646433 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1647439 1647439 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1648091 1648091 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold419 SAMTools SNP 1648097 1648097 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold419 SAMTools SNP 1648121 1648121 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold419 SAMTools SNP 1660501 1660501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1661292 1661292 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold419 SAMTools SNP 1661325 1661325 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold419 SAMTools SNP 1661373 1661373 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold419 SAMTools SNP 1666631 1666631 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1666706 1666706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1667657 1667657 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold419 SAMTools SNP 1673894 1673894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold419 SAMTools SNP 1674632 1674632 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold419 SAMTools SNP 1675247 1675247 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1678356 1678356 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold419 SAMTools SNP 1678448 1678448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold419 SAMTools SNP 1679307 1679307 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1679321 1679321 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1679364 1679364 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1679382 1679382 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold419 SAMTools SNP 1688207 1688207 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold419 SAMTools SNP 1712351 1712351 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold419 SAMTools SNP 1712420 1712420 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold419 SAMTools SNP 1712453 1712453 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold419 SAMTools SNP 1714109 1714109 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold419 SAMTools SNP 1714163 1714163 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41900 SAMTools SNP 16341 16341 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41900 SAMTools SNP 31988 31988 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41900 SAMTools SNP 34145 34145 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41900 SAMTools SNP 34191 34191 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41900 SAMTools SNP 35601 35601 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41900 SAMTools SNP 36251 36251 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41900 SAMTools SNP 36276 36276 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41900 SAMTools SNP 36414 36414 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41900 SAMTools SNP 39279 39279 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold41900 SAMTools SNP 41188 41188 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41900 SAMTools SNP 41209 41209 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41900 SAMTools SNP 41537 41537 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C200:99 scaffold41900 SAMTools SNP 42390 42390 32 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold41900 SAMTools SNP 42391 42391 27 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold41900 SAMTools SNP 44078 44078 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41900 SAMTools SNP 44083 44083 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41900 SAMTools SNP 46022 46022 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41900 SAMTools SNP 46740 46740 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41900 SAMTools SNP 49610 49610 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41900 SAMTools SNP 98019 98019 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41900 SAMTools SNP 132433 132433 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41900 SAMTools SNP 132499 132499 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41900 SAMTools SNP 132836 132836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.29%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold41900 SAMTools SNP 132902 132902 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41900 SAMTools SNP 133375 133375 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold41900 SAMTools SNP 133911 133911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C13%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold41900 SAMTools SNP 134516 134516 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41900 SAMTools SNP 134571 134571 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C26:29 scaffold41900 SAMTools SNP 134838 134838 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.068%2C1%2C2.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold41900 SAMTools SNP 134845 134845 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold41900 SAMTools SNP 134888 134888 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41900 SAMTools SNP 134892 134892 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41900 SAMTools SNP 134908 134908 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41900 SAMTools SNP 135406 135406 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C4%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41900 SAMTools SNP 135431 135431 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C1%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41900 SAMTools SNP 136065 136065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C45%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41900 SAMTools SNP 136268 136268 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41900 SAMTools SNP 136926 136926 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold41900 SAMTools SNP 136948 136948 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold41900 SAMTools SNP 136986 136986 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41900 SAMTools SNP 136996 136996 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41902 SAMTools SNP 22562 22562 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold41902 SAMTools SNP 23014 23014 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C87%2C0:99 scaffold41902 SAMTools SNP 23100 23100 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C45%2C0:87 scaffold41902 SAMTools SNP 23370 23370 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C33%2C0:63 scaffold41902 SAMTools SNP 23931 23931 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.015%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41902 SAMTools SNP 25652 25652 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C20%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.14%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold41902 SAMTools SNP 25956 25956 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41902 SAMTools SNP 40192 40192 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41902 SAMTools SNP 40240 40240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 40746 40746 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41902 SAMTools SNP 41125 41125 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41902 SAMTools SNP 41421 41421 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.17%2C0.00033%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C247:34 scaffold41902 SAMTools SNP 41614 41614 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41902 SAMTools SNP 41735 41735 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold41902 SAMTools SNP 42183 42183 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 42200 42200 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 42252 42252 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold41902 SAMTools SNP 42474 42474 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41902 SAMTools SNP 42842 42842 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 42895 42895 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 43379 43379 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 43801 43801 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41902 SAMTools SNP 44251 44251 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold41902 SAMTools SNP 44278 44278 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold41902 SAMTools SNP 44739 44739 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 45221 45221 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41902 SAMTools SNP 45240 45240 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41902 SAMTools SNP 45662 45662 7.03 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C237%2C216%2C255%2C0%2C237:24 scaffold41902 SAMTools SNP 45685 45685 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41902 SAMTools SNP 45763 45763 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.55%2C2.2e-12%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41902 SAMTools SNP 45793 45793 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C0.028%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C151:67 scaffold41902 SAMTools SNP 45800 45800 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.43%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C161:99 scaffold41902 SAMTools SNP 46295 46295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 47285 47285 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.2%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold41902 SAMTools SNP 47296 47296 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.074%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold41902 SAMTools SNP 48682 48682 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 48706 48706 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41902 SAMTools SNP 48757 48757 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold41902 SAMTools SNP 50582 50582 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1.2e-28%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C217:99 scaffold41902 SAMTools SNP 52469 52469 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C23%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0028%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41902 SAMTools SNP 52688 52688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C152%2C60%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-28%2C1%2C1%2C2.6e-33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 52941 52941 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C67%2C34%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41902 SAMTools SNP 53119 53119 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C43%2C3%2C238%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D1%2C0.067%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41902 SAMTools SNP 53194 53194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41902 SAMTools SNP 56176 56176 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41902 SAMTools SNP 56220 56220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41902 SAMTools SNP 56243 56243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41902 SAMTools SNP 56718 56718 137 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C81%2C0%2C163%2C60%2C160:99 scaffold41902 SAMTools SNP 56764 56764 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C99%2C0:99 scaffold41902 SAMTools SNP 60153 60153 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41902 SAMTools SNP 60244 60244 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D53.8%3BPV4%3D0.33%2C0.018%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C82:84 scaffold41902 SAMTools SNP 64853 64853 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C213:99 scaffold41902 SAMTools SNP 73385 73385 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C27%2C0:51 scaffold41902 SAMTools SNP 99234 99234 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold41902 SAMTools SNP 99824 99824 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 99849 99849 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.083%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41902 SAMTools SNP 100307 100307 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41902 SAMTools SNP 100361 100361 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41902 SAMTools SNP 100368 100368 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41902 SAMTools SNP 100638 100638 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41902 SAMTools SNP 101339 101339 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C127:99 scaffold41902 SAMTools SNP 101635 101635 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41902 SAMTools SNP 101650 101650 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41902 SAMTools SNP 101740 101740 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41902 SAMTools SNP 102154 102154 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold41902 SAMTools SNP 102205 102205 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41902 SAMTools SNP 102814 102814 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41902 SAMTools SNP 119352 119352 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold41902 SAMTools SNP 120141 120141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 120186 120186 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41902 SAMTools SNP 125258 125258 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold41928 SAMTools SNP 5176 5176 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41928 SAMTools SNP 5198 5198 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41928 SAMTools SNP 5234 5234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41928 SAMTools SNP 5310 5310 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41928 SAMTools SNP 8288 8288 41.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold41928 SAMTools SNP 30043 30043 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41928 SAMTools SNP 47514 47514 7.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold41948 SAMTools SNP 903 903 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41948 SAMTools SNP 971 971 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41948 SAMTools SNP 1040 1040 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41948 SAMTools SNP 44661 44661 60.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold41948 SAMTools SNP 45039 45039 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C21%2C0:39 scaffold41948 SAMTools SNP 45285 45285 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C41%2C2%3BMQ%3D48%3BFQ%3D67%3BPV4%3D0.21%2C2.2e-71%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold41948 SAMTools SNP 45357 45357 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C2%2C16%3BMQ%3D47%3BFQ%3D32%3BPV4%3D0.69%2C3.2e-42%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41948 SAMTools SNP 45890 45890 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C4%2C95%2C0%3BMQ%3D49%3BFQ%3D41%3BPV4%3D0.12%2C9.6e-167%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold41948 SAMTools SNP 53585 53585 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C2%3BMQ%3D49%3BFQ%3D195%3BPV4%3D0.12%2C1%2C0.099%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold41948 SAMTools SNP 56224 56224 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41948 SAMTools SNP 56425 56425 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold41948 SAMTools SNP 56985 56985 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold41948 SAMTools SNP 58776 58776 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41948 SAMTools SNP 60515 60515 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C135%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41948 SAMTools SNP 63913 63913 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold41948 SAMTools SNP 65824 65824 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41948 SAMTools SNP 97845 97845 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41948 SAMTools SNP 118426 118426 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C35:37 scaffold41954 SAMTools SNP 4819 4819 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 4841 4841 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 4905 4905 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 4913 4913 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 5199 5199 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.042%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold41954 SAMTools SNP 6848 6848 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold41954 SAMTools SNP 7090 7090 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold41954 SAMTools SNP 8694 8694 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41954 SAMTools SNP 10371 10371 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41954 SAMTools SNP 11549 11549 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 28464 28464 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41954 SAMTools SNP 66613 66613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41954 SAMTools SNP 66631 66631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41954 SAMTools SNP 67602 67602 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C192%2C17%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C2.4e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 68084 68084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C34%2C38%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 68330 68330 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C36%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41954 SAMTools SNP 74459 74459 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold41954 SAMTools SNP 76222 76222 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold41954 SAMTools SNP 76352 76352 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C66%2C96%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.24%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 83262 83262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C31%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 83298 83298 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 83316 83316 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.27%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 83551 83551 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C25%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold41954 SAMTools SNP 83856 83856 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C30%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.29%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 84266 84266 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C30%2C0%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00037%2C2.2e-08%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41954 SAMTools SNP 85884 85884 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C22%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.36%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 85911 85911 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C22%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.27%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 86134 86134 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C21%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 86752 86752 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 89156 89156 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold41954 SAMTools SNP 94152 94152 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41954 SAMTools SNP 94157 94157 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 112622 112622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold41954 SAMTools SNP 115065 115065 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold41954 SAMTools SNP 115760 115760 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 117500 117500 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold41954 SAMTools SNP 119421 119421 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold41954 SAMTools SNP 119457 119457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 119549 119549 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41954 SAMTools SNP 121683 121683 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.35%2C3e-11%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold41954 SAMTools SNP 121769 121769 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C117:77 scaffold41954 SAMTools SNP 122373 122373 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C128:85 scaffold41954 SAMTools SNP 124717 124717 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C81%2C0:99 scaffold41954 SAMTools SNP 125843 125843 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.39%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 126216 126216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold41954 SAMTools SNP 126333 126333 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 126879 126879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41954 SAMTools SNP 126910 126910 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41954 SAMTools SNP 128798 128798 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold41954 SAMTools SNP 129010 129010 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41954 SAMTools SNP 129202 129202 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 1935 1935 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41968 SAMTools SNP 1975 1975 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41968 SAMTools SNP 2946 2946 85.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C9.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C17:20 scaffold41968 SAMTools SNP 3023 3023 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41968 SAMTools SNP 3060 3060 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold41968 SAMTools SNP 3350 3350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41968 SAMTools SNP 4150 4150 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 4174 4174 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0048%2C0.42%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C238:99 scaffold41968 SAMTools SNP 4706 4706 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41968 SAMTools SNP 4787 4787 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41968 SAMTools SNP 5108 5108 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 5132 5132 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 5159 5159 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 5509 5509 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 5534 5534 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 11487 11487 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41968 SAMTools SNP 11488 11488 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41968 SAMTools SNP 12417 12417 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 12444 12444 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 12480 12480 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 12489 12489 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41968 SAMTools SNP 13436 13436 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold41968 SAMTools SNP 14219 14219 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold41968 SAMTools SNP 14326 14326 78.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C3.8e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C17:20 scaffold41968 SAMTools SNP 14449 14449 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41968 SAMTools SNP 14792 14792 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold41968 SAMTools SNP 14807 14807 60.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold41968 SAMTools SNP 14834 14834 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41968 SAMTools SNP 15456 15456 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold41968 SAMTools SNP 15587 15587 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C26%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.096%2C7.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41968 SAMTools SNP 15626 15626 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 16734 16734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 16858 16858 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 17926 17926 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41968 SAMTools SNP 17943 17943 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41968 SAMTools SNP 18382 18382 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 18388 18388 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.079%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C193:99 scaffold41968 SAMTools SNP 18704 18704 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C158:99 scaffold41968 SAMTools SNP 19804 19804 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41968 SAMTools SNP 21680 21680 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold41968 SAMTools SNP 22094 22094 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold41968 SAMTools SNP 23497 23497 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C235:99 scaffold41968 SAMTools SNP 23766 23766 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.091%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41968 SAMTools SNP 25096 25096 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold41968 SAMTools SNP 25588 25588 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41968 SAMTools SNP 25944 25944 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold41968 SAMTools SNP 25950 25950 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41968 SAMTools SNP 26113 26113 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41968 SAMTools SNP 27117 27117 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 27147 27147 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 27159 27159 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 27216 27216 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.57%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C218:80 scaffold41968 SAMTools SNP 27497 27497 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.0098%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C187:99 scaffold41968 SAMTools SNP 27513 27513 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.51%2C0.0025%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold41968 SAMTools SNP 27520 27520 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.23%2C0.032%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold41968 SAMTools SNP 28196 28196 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.17%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold41968 SAMTools SNP 28743 28743 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 29259 29259 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C55%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold41968 SAMTools SNP 29322 29322 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 29325 29325 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold41968 SAMTools SNP 29363 29363 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold41968 SAMTools SNP 29791 29791 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41968 SAMTools SNP 30101 30101 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold41968 SAMTools SNP 31354 31354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41968 SAMTools SNP 31707 31707 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.039%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold41968 SAMTools SNP 31719 31719 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41968 SAMTools SNP 31743 31743 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.35%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold41968 SAMTools SNP 31851 31851 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41968 SAMTools SNP 32101 32101 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41968 SAMTools SNP 32148 32148 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41968 SAMTools SNP 32369 32369 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.2%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold41968 SAMTools SNP 32435 32435 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41968 SAMTools SNP 32460 32460 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold41968 SAMTools SNP 32465 32465 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold41968 SAMTools SNP 32474 32474 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold41968 SAMTools SNP 32697 32697 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold41968 SAMTools SNP 32709 32709 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold41968 SAMTools SNP 33353 33353 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.047%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C207:34 scaffold41968 SAMTools SNP 34277 34277 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.064%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C218:99 scaffold41968 SAMTools SNP 34539 34539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41968 SAMTools SNP 34569 34569 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C15%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0077%2C9.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold41968 SAMTools SNP 34628 34628 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41968 SAMTools SNP 37913 37913 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41968 SAMTools SNP 59157 59157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C10%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold41968 SAMTools SNP 59183 59183 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C15%2C18%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold41968 SAMTools SNP 59847 59847 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C13%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1.1e-06%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold41968 SAMTools SNP 60071 60071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-05%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 60117 60117 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41968 SAMTools SNP 60146 60146 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C0.00011%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41968 SAMTools SNP 61302 61302 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C90%2C0:99 scaffold41968 SAMTools SNP 62440 62440 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C138:60 scaffold41968 SAMTools SNP 62446 62446 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C74:77 scaffold41968 SAMTools SNP 63062 63062 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41968 SAMTools SNP 63095 63095 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold41968 SAMTools SNP 66010 66010 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 66031 66031 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 66112 66112 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 66142 66142 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41968 SAMTools SNP 66363 66363 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41968 SAMTools SNP 67148 67148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41968 SAMTools SNP 67154 67154 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41968 SAMTools SNP 67385 67385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold41968 SAMTools SNP 67620 67620 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41968 SAMTools SNP 67683 67683 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold41968 SAMTools SNP 68371 68371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C19%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold41968 SAMTools SNP 68374 68374 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C27%2C11%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold41968 SAMTools SNP 68752 68752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C30%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold41968 SAMTools SNP 68869 68869 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5e-07%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C228:46 scaffold41968 SAMTools SNP 68897 68897 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C30%2C0:57 scaffold41968 SAMTools SNP 68918 68918 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41968 SAMTools SNP 69913 69913 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C9%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.00082%2C0.15%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold41968 SAMTools SNP 69928 69928 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C6%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0089%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41968 SAMTools SNP 70717 70717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41968 SAMTools SNP 70721 70721 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C201:63 scaffold41968 SAMTools SNP 70739 70739 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C230:99 scaffold41968 SAMTools SNP 71353 71353 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41968 SAMTools SNP 72518 72518 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.036%2C2.5e-13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C192:99 scaffold41968 SAMTools SNP 76674 76674 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 80403 80403 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41968 SAMTools SNP 80909 80909 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold41968 SAMTools SNP 80930 80930 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold41968 SAMTools SNP 81095 81095 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold41968 SAMTools SNP 81114 81114 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41968 SAMTools SNP 85872 85872 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold41968 SAMTools SNP 85918 85918 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C8.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C237:99 scaffold41968 SAMTools SNP 85940 85940 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C60%2C0:99 scaffold41968 SAMTools SNP 86960 86960 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41968 SAMTools SNP 86963 86963 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41968 SAMTools SNP 88208 88208 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold41968 SAMTools SNP 88264 88264 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41968 SAMTools SNP 89776 89776 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41968 SAMTools SNP 89821 89821 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41968 SAMTools SNP 90163 90163 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.076%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold41968 SAMTools SNP 90182 90182 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41968 SAMTools SNP 90217 90217 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41968 SAMTools SNP 90351 90351 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41968 SAMTools SNP 90386 90386 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 90462 90462 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 90886 90886 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 91511 91511 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41968 SAMTools SNP 91538 91538 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41968 SAMTools SNP 91574 91574 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold41968 SAMTools SNP 92657 92657 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold41968 SAMTools SNP 92672 92672 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41968 SAMTools SNP 92986 92986 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold41968 SAMTools SNP 93880 93880 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold41968 SAMTools SNP 105734 105734 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41968 SAMTools SNP 105790 105790 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41968 SAMTools SNP 105961 105961 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41968 SAMTools SNP 107683 107683 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41968 SAMTools SNP 107704 107704 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 108214 108214 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41968 SAMTools SNP 113746 113746 179 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C54%2C0%2C212%2C41%2C209:99 scaffold41968 SAMTools SNP 113835 113835 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41968 SAMTools SNP 113839 113839 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41968 SAMTools SNP 116870 116870 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41968 SAMTools SNP 116901 116901 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold41968 SAMTools SNP 124002 124002 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41968 SAMTools SNP 125628 125628 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41968 SAMTools SNP 125672 125672 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41968 SAMTools SNP 133406 133406 7.39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold41968 SAMTools SNP 133501 133501 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41968 SAMTools SNP 134652 134652 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C206%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.34%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41968 SAMTools SNP 134675 134675 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C85%2C0%2C15%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C185:54 scaffold41968 SAMTools SNP 134679 134679 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.035%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C179:99 scaffold41968 SAMTools SNP 134689 134689 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 101 101 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 280 280 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 2497 2497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41970 SAMTools SNP 2533 2533 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C62%2C2%3BMQ%3D50%3BFQ%3D-190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold41970 SAMTools SNP 2587 2587 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold41970 SAMTools SNP 4090 4090 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C176:99 scaffold41970 SAMTools SNP 4824 4824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 4827 4827 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 7719 7719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C31%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41970 SAMTools SNP 7749 7749 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C5%2C9%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold41970 SAMTools SNP 8822 8822 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C9%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 9672 9672 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 11392 11392 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold41970 SAMTools SNP 27397 27397 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41970 SAMTools SNP 28445 28445 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold41970 SAMTools SNP 28478 28478 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold41970 SAMTools SNP 28579 28579 28.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold41970 SAMTools SNP 31255 31255 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41970 SAMTools SNP 31261 31261 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41970 SAMTools SNP 49903 49903 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold41970 SAMTools SNP 50887 50887 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41970 SAMTools SNP 52532 52532 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 53558 53558 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41970 SAMTools SNP 53570 53570 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 54003 54003 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 54046 54046 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C0.11%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 55099 55099 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41970 SAMTools SNP 55829 55829 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C54%2C0:99 scaffold41970 SAMTools SNP 56270 56270 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41970 SAMTools SNP 58288 58288 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41970 SAMTools SNP 59946 59946 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41970 SAMTools SNP 59957 59957 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 60017 60017 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 60026 60026 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 65510 65510 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold41970 SAMTools SNP 70045 70045 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold41970 SAMTools SNP 70846 70846 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41970 SAMTools SNP 70963 70963 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.14%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C132:66 scaffold41970 SAMTools SNP 71194 71194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41970 SAMTools SNP 73038 73038 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold41970 SAMTools SNP 74570 74570 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C120%2C0:99 scaffold41970 SAMTools SNP 74654 74654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41970 SAMTools SNP 75003 75003 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41970 SAMTools SNP 81868 81868 89.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold41970 SAMTools SNP 83552 83552 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 83576 83576 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41970 SAMTools SNP 84855 84855 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41970 SAMTools SNP 85331 85331 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41970 SAMTools SNP 85367 85367 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41970 SAMTools SNP 88040 88040 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41970 SAMTools SNP 88071 88071 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold41970 SAMTools SNP 88470 88470 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold41970 SAMTools SNP 88514 88514 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C62:65 scaffold41970 SAMTools SNP 88535 88535 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41970 SAMTools SNP 88969 88969 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41970 SAMTools SNP 89792 89792 23.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold41970 SAMTools SNP 90142 90142 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41970 SAMTools SNP 91670 91670 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 92127 92127 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41970 SAMTools SNP 92297 92297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 93079 93079 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41970 SAMTools SNP 94408 94408 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41970 SAMTools SNP 97149 97149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 97501 97501 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 97570 97570 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 99728 99728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 99784 99784 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold41970 SAMTools SNP 100707 100707 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41970 SAMTools SNP 100844 100844 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C207:99 scaffold41970 SAMTools SNP 101718 101718 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.29%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C228:63 scaffold41970 SAMTools SNP 107916 107916 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41970 SAMTools SNP 109892 109892 222 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0%2C240%2C13%2C237:99 scaffold41970 SAMTools SNP 110221 110221 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41970 SAMTools SNP 110999 110999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41970 SAMTools SNP 111259 111259 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 111305 111305 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41970 SAMTools SNP 111337 111337 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.072%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C245:99 scaffold41970 SAMTools SNP 111945 111945 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41970 SAMTools SNP 112255 112255 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C41%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41970 SAMTools SNP 113454 113454 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41970 SAMTools SNP 113483 113483 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold41970 SAMTools SNP 113501 113501 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold41970 SAMTools SNP 113795 113795 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold41970 SAMTools SNP 113845 113845 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41970 SAMTools SNP 114047 114047 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41970 SAMTools SNP 119341 119341 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41970 SAMTools SNP 119533 119533 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41970 SAMTools SNP 119548 119548 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41970 SAMTools SNP 119557 119557 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41970 SAMTools SNP 120426 120426 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold41970 SAMTools SNP 120857 120857 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.074%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold41970 SAMTools SNP 121130 121130 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.11%2C0.012%2C1%2C8.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41970 SAMTools SNP 121429 121429 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41970 SAMTools SNP 121433 121433 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41970 SAMTools SNP 123089 123089 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41970 SAMTools SNP 123097 123097 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold41970 SAMTools SNP 123535 123535 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold41970 SAMTools SNP 123714 123714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41970 SAMTools SNP 139399 139399 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C24%3BMQ%3D50%3BFQ%3D-59%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C32%2C0:61 scaffold41970 SAMTools SNP 139408 139408 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41972 SAMTools SNP 78 78 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold41972 SAMTools SNP 90 90 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold41972 SAMTools SNP 7033 7033 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold41972 SAMTools SNP 9395 9395 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41972 SAMTools SNP 9762 9762 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41972 SAMTools SNP 9868 9868 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C26:29 scaffold41972 SAMTools SNP 12601 12601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41972 SAMTools SNP 12622 12622 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41972 SAMTools SNP 13174 13174 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold41972 SAMTools SNP 14059 14059 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold41972 SAMTools SNP 14277 14277 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C186:99 scaffold41972 SAMTools SNP 14292 14292 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C238:99 scaffold41972 SAMTools SNP 14316 14316 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C235:71 scaffold41972 SAMTools SNP 14334 14334 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C140:81 scaffold41972 SAMTools SNP 14596 14596 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41972 SAMTools SNP 14620 14620 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C4%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41972 SAMTools SNP 16141 16141 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold41972 SAMTools SNP 25876 25876 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 25889 25889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 37089 37089 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0.0013%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold41972 SAMTools SNP 37190 37190 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.00077%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold41972 SAMTools SNP 48400 48400 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41972 SAMTools SNP 48421 48421 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41972 SAMTools SNP 48736 48736 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41972 SAMTools SNP 78773 78773 116 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C40%2C28%2C143%2C0%2C140:21 scaffold41972 SAMTools SNP 81817 81817 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold41972 SAMTools SNP 83901 83901 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C54%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.092%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold41972 SAMTools SNP 83908 83908 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold41972 SAMTools SNP 84895 84895 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41972 SAMTools SNP 84909 84909 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41972 SAMTools SNP 85426 85426 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 87326 87326 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold41972 SAMTools SNP 87331 87331 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41972 SAMTools SNP 88393 88393 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.7e-42%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C169:60 scaffold41972 SAMTools SNP 88591 88591 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold41972 SAMTools SNP 88694 88694 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold41972 SAMTools SNP 95086 95086 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.17%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold41972 SAMTools SNP 95110 95110 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41972 SAMTools SNP 95143 95143 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold41972 SAMTools SNP 95610 95610 19.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold41972 SAMTools SNP 95703 95703 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C30%2C0:50 scaffold41972 SAMTools SNP 96122 96122 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41972 SAMTools SNP 96259 96259 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41972 SAMTools SNP 96274 96274 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41972 SAMTools SNP 98073 98073 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.017%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41972 SAMTools SNP 98111 98111 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41972 SAMTools SNP 98625 98625 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41972 SAMTools SNP 98658 98658 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41972 SAMTools SNP 99845 99845 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 101504 101504 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41972 SAMTools SNP 106524 106524 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D46%3BFQ%3D4.13%3BPV4%3D1%2C0.42%2C0.36%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C29:32 scaffold41972 SAMTools SNP 106545 106545 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold41972 SAMTools SNP 107273 107273 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold41972 SAMTools SNP 108021 108021 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41972 SAMTools SNP 108888 108888 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41972 SAMTools SNP 108910 108910 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 112940 112940 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 112956 112956 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41972 SAMTools SNP 116999 116999 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 117018 117018 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 118999 118999 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41972 SAMTools SNP 119457 119457 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41972 SAMTools SNP 120851 120851 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold41972 SAMTools SNP 120913 120913 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41972 SAMTools SNP 121513 121513 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41972 SAMTools SNP 121783 121783 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold41972 SAMTools SNP 122351 122351 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41972 SAMTools SNP 122368 122368 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41972 SAMTools SNP 122431 122431 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41972 SAMTools SNP 122463 122463 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41972 SAMTools SNP 124135 124135 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41972 SAMTools SNP 138514 138514 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold41972 SAMTools SNP 138637 138637 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C60%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold41972 SAMTools SNP 139811 139811 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C120:33 scaffold41974 SAMTools SNP 2533 2533 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 5459 5459 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold41974 SAMTools SNP 8726 8726 4.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold41974 SAMTools SNP 10744 10744 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C66%2C0:99 scaffold41974 SAMTools SNP 10839 10839 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold41974 SAMTools SNP 10855 10855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41974 SAMTools SNP 11185 11185 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold41974 SAMTools SNP 11469 11469 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold41974 SAMTools SNP 11762 11762 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41974 SAMTools SNP 11853 11853 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41974 SAMTools SNP 11877 11877 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold41974 SAMTools SNP 21504 21504 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41974 SAMTools SNP 23216 23216 86.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold41974 SAMTools SNP 23364 23364 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C45%2C0:87 scaffold41974 SAMTools SNP 25159 25159 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold41974 SAMTools SNP 34754 34754 42.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold41974 SAMTools SNP 34964 34964 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold41974 SAMTools SNP 34992 34992 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41974 SAMTools SNP 34995 34995 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41974 SAMTools SNP 35193 35193 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 35833 35833 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 36852 36852 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41974 SAMTools SNP 37067 37067 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41974 SAMTools SNP 37769 37769 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41974 SAMTools SNP 40143 40143 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C36%2C0:69 scaffold41974 SAMTools SNP 40257 40257 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C47%2C8%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0018%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold41974 SAMTools SNP 40793 40793 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 41202 41202 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C40%2C13%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.022%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold41974 SAMTools SNP 41242 41242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41974 SAMTools SNP 41257 41257 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41974 SAMTools SNP 41320 41320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C11%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 42119 42119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 43254 43254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C32%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold41974 SAMTools SNP 43678 43678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C6%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41974 SAMTools SNP 43696 43696 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41974 SAMTools SNP 44794 44794 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C21%2C30%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.16%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 44875 44875 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C5%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D5.2e-05%2C1%2C1%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold41974 SAMTools SNP 44931 44931 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold41974 SAMTools SNP 45133 45133 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold41974 SAMTools SNP 45621 45621 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.00039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold41974 SAMTools SNP 45915 45915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C41%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold41974 SAMTools SNP 45972 45972 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41974 SAMTools SNP 46463 46463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C10%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D0.094%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41974 SAMTools SNP 46487 46487 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C24%2C9%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold41974 SAMTools SNP 46535 46535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41974 SAMTools SNP 48767 48767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 48817 48817 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41974 SAMTools SNP 48823 48823 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold41974 SAMTools SNP 49045 49045 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41974 SAMTools SNP 49108 49108 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold41974 SAMTools SNP 49111 49111 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41974 SAMTools SNP 51704 51704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 51867 51867 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C14%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41974 SAMTools SNP 52121 52121 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C22%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.49%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold41974 SAMTools SNP 52315 52315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold41974 SAMTools SNP 53882 53882 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41974 SAMTools SNP 56390 56390 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 56403 56403 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold41974 SAMTools SNP 56611 56611 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold41974 SAMTools SNP 57180 57180 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41974 SAMTools SNP 57301 57301 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 57355 57355 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold41974 SAMTools SNP 58771 58771 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C230:77 scaffold41974 SAMTools SNP 58804 58804 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.14%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold41974 SAMTools SNP 58810 58810 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold41974 SAMTools SNP 59520 59520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41974 SAMTools SNP 59601 59601 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold41974 SAMTools SNP 59643 59643 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41974 SAMTools SNP 59661 59661 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41974 SAMTools SNP 60256 60256 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C13%2C11%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00027%2C5.6e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41974 SAMTools SNP 60316 60316 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold41974 SAMTools SNP 61617 61617 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41974 SAMTools SNP 61645 61645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41974 SAMTools SNP 61833 61833 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 61851 61851 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold41974 SAMTools SNP 61860 61860 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41974 SAMTools SNP 62153 62153 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold41974 SAMTools SNP 62171 62171 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.27%2C0.068%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold41974 SAMTools SNP 62189 62189 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 62894 62894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 64028 64028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C16%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold41974 SAMTools SNP 65905 65905 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41974 SAMTools SNP 66642 66642 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C149:99 scaffold41974 SAMTools SNP 66674 66674 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C195:99 scaffold41974 SAMTools SNP 67475 67475 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C81%2C22%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C0.0075%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 67496 67496 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C90%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1.7e-05%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 70051 70051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C3.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 70072 70072 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C4%2C0%3BMQ%3D49%3BFQ%3D18.1%3BPV4%3D0.02%2C0.21%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41974 SAMTools SNP 70079 70079 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C0%2C3%3BMQ%3D49%3BFQ%3D23%3BPV4%3D0.23%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold41974 SAMTools SNP 70088 70088 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 70748 70748 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C0%3BMQ%3D49%3BFQ%3D111%3BPV4%3D0.0055%2C0.00079%2C0.12%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41974 SAMTools SNP 70751 70751 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C0%3BMQ%3D49%3BFQ%3D117%3BPV4%3D0.015%2C0.00018%2C0.09%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold41974 SAMTools SNP 70853 70853 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C6%2C0%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.064%2C7.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold41974 SAMTools SNP 71407 71407 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 71812 71812 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C4.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41974 SAMTools SNP 71821 71821 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C4%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.19%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold41974 SAMTools SNP 72130 72130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 72463 72463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C3%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41974 SAMTools SNP 72895 72895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D512%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C195%2C62%2C180%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C9.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 73785 73785 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold41974 SAMTools SNP 73786 73786 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold41974 SAMTools SNP 75416 75416 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C19%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41974 SAMTools SNP 75428 75428 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C43%2C22%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0042%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold41974 SAMTools SNP 75803 75803 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C180%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 76161 76161 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C91%2C12%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 76212 76212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 76512 76512 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 76726 76726 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C7.2e-05%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 76732 76732 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 76783 76783 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41974 SAMTools SNP 77197 77197 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.2%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold41974 SAMTools SNP 77204 77204 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41974 SAMTools SNP 77224 77224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.28%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 77693 77693 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C31%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 78214 78214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C31%2C15%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 78435 78435 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C14%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.043%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 78477 78477 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C51%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41974 SAMTools SNP 78525 78525 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold41974 SAMTools SNP 78861 78861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 79204 79204 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 80310 80310 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C30%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C145:99 scaffold41974 SAMTools SNP 80359 80359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41974 SAMTools SNP 80362 80362 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41974 SAMTools SNP 81292 81292 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41974 SAMTools SNP 81298 81298 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold41974 SAMTools SNP 81728 81728 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41974 SAMTools SNP 81757 81757 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C26:29 scaffold41974 SAMTools SNP 82243 82243 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 82267 82267 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41974 SAMTools SNP 82428 82428 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 82793 82793 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 84045 84045 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41974 SAMTools SNP 84173 84173 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41974 SAMTools SNP 84206 84206 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41974 SAMTools SNP 84237 84237 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 84238 84238 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41974 SAMTools SNP 84515 84515 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.16%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold41974 SAMTools SNP 84526 84526 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold41974 SAMTools SNP 84537 84537 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.42%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold41974 SAMTools SNP 84722 84722 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold41974 SAMTools SNP 84766 84766 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41974 SAMTools SNP 88722 88722 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41974 SAMTools SNP 88743 88743 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41974 SAMTools SNP 95287 95287 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C42%3BMQ%3D35%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C255%2C0:99 scaffold41974 SAMTools SNP 95362 95362 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C5%2C9%3BMQ%3D32%3BFQ%3D24%3BPV4%3D0.36%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C208:54 scaffold41974 SAMTools SNP 95371 95371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C9%2C15%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 99084 99084 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C12%2C40%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 105090 105090 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C68%3BMQ%3D7%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C255%2C0:99 scaffold41974 SAMTools SNP 105833 105833 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C86%3BMQ%3D1%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C255%2C0:99 scaffold41974 SAMTools SNP 108091 108091 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold41974 SAMTools SNP 108640 108640 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 108945 108945 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 108997 108997 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C1%2C16%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.11%2C7.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold41974 SAMTools SNP 110116 110116 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41974 SAMTools SNP 110149 110149 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C222:99 scaffold41974 SAMTools SNP 111648 111648 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41974 SAMTools SNP 111666 111666 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold41974 SAMTools SNP 111918 111918 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41974 SAMTools SNP 112230 112230 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold41974 SAMTools SNP 112260 112260 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41974 SAMTools SNP 112293 112293 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41974 SAMTools SNP 112568 112568 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41974 SAMTools SNP 112596 112596 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold41974 SAMTools SNP 112806 112806 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold41974 SAMTools SNP 112925 112925 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41974 SAMTools SNP 113197 113197 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold41974 SAMTools SNP 120662 120662 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 120667 120667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 122188 122188 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C53%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 122258 122258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C24%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C3.9e-22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 122914 122914 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C40%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41974 SAMTools SNP 122971 122971 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41974 SAMTools SNP 122982 122982 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41974 SAMTools SNP 123028 123028 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C26%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold41974 SAMTools SNP 123320 123320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 123338 123338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41974 SAMTools SNP 123362 123362 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C3%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold41974 SAMTools SNP 124226 124226 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0079%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 124262 124262 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.11%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold41974 SAMTools SNP 124328 124328 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C6%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold41974 SAMTools SNP 124358 124358 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C33%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold41974 SAMTools SNP 125082 125082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C242%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41974 SAMTools SNP 125704 125704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C13%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 126253 126253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.18%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 126268 126268 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C11%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.067%2C1%2C1%2C6.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold41974 SAMTools SNP 126301 126301 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 126537 126537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C23%2C145%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 126555 126555 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C18%2C135%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.00019%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 126603 126603 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C150%2C30%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 127218 127218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C1%2C36%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41974 SAMTools SNP 127242 127242 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C8%3BMQ%3D45%3BFQ%3D140%3BPV4%3D0.28%2C1%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C242:99 scaffold41974 SAMTools SNP 127287 127287 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold41982 SAMTools SNP 12092 12092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C21%2C40%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.28%2C0.013%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 12320 12320 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C4%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0098%2C0.033%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold41982 SAMTools SNP 13257 13257 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.61%2C0.35%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold41982 SAMTools SNP 13302 13302 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.19%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C157:98 scaffold41982 SAMTools SNP 13359 13359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold41982 SAMTools SNP 13364 13364 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold41982 SAMTools SNP 14079 14079 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold41982 SAMTools SNP 16365 16365 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 16577 16577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 16871 16871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold41982 SAMTools SNP 16886 16886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41982 SAMTools SNP 18408 18408 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 18412 18412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 18417 18417 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C14%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 19272 19272 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold41982 SAMTools SNP 21499 21499 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.044%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41982 SAMTools SNP 22883 22883 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold41982 SAMTools SNP 24187 24187 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 24223 24223 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41982 SAMTools SNP 24247 24247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C4%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 25895 25895 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41982 SAMTools SNP 25906 25906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41982 SAMTools SNP 26026 26026 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C40%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold41982 SAMTools SNP 26128 26128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41982 SAMTools SNP 26161 26161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C21%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold41982 SAMTools SNP 26880 26880 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C71%2C33%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold41982 SAMTools SNP 26918 26918 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C46%2C61%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1.5e-09%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold41982 SAMTools SNP 28563 28563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C66%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 28596 28596 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold41982 SAMTools SNP 29307 29307 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41982 SAMTools SNP 29342 29342 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41982 SAMTools SNP 29658 29658 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41982 SAMTools SNP 29673 29673 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41982 SAMTools SNP 30687 30687 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold41982 SAMTools SNP 30739 30739 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 68278 68278 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41982 SAMTools SNP 68723 68723 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41982 SAMTools SNP 68792 68792 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41982 SAMTools SNP 68807 68807 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 68818 68818 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41982 SAMTools SNP 69186 69186 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41982 SAMTools SNP 69282 69282 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold41982 SAMTools SNP 69806 69806 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold41982 SAMTools SNP 70200 70200 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41982 SAMTools SNP 70223 70223 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41982 SAMTools SNP 71875 71875 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.36%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C26:29 scaffold41982 SAMTools SNP 71926 71926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41982 SAMTools SNP 72152 72152 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41982 SAMTools SNP 73160 73160 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 75597 75597 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C228:99 scaffold41982 SAMTools SNP 76040 76040 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D47%3BFQ%3D53%3BPV4%3D1%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C195:83 scaffold41982 SAMTools SNP 76051 76051 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C6%2C2%3BMQ%3D49%3BFQ%3D183%3BPV4%3D1%2C1%2C0.074%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold41982 SAMTools SNP 77133 77133 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 79137 79137 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 79842 79842 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold41982 SAMTools SNP 79851 79851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41982 SAMTools SNP 79877 79877 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold41982 SAMTools SNP 80145 80145 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.33%2C0.22%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41982 SAMTools SNP 80713 80713 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C6%2C31%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold41982 SAMTools SNP 80740 80740 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C16%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold41982 SAMTools SNP 80766 80766 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C71%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 80775 80775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C71%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 88494 88494 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D757%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C78%2C637%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 93380 93380 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold41982 SAMTools SNP 94793 94793 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.49%2C2.1e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C127:90 scaffold41982 SAMTools SNP 95504 95504 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold41982 SAMTools SNP 95617 95617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D894%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C336%2C97%2C378%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 96227 96227 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D68%2C122%2C7%2C18%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.51%2C0.05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold41982 SAMTools SNP 102198 102198 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41982 SAMTools SNP 102455 102455 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41982 SAMTools SNP 102464 102464 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold41982 SAMTools SNP 102512 102512 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold41982 SAMTools SNP 103483 103483 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold41982 SAMTools SNP 103500 103500 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold41982 SAMTools SNP 103716 103716 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.32%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C244:99 scaffold41982 SAMTools SNP 103735 103735 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold41982 SAMTools SNP 103784 103784 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41982 SAMTools SNP 103849 103849 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C207:36 scaffold41982 SAMTools SNP 104906 104906 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold41982 SAMTools SNP 105044 105044 73 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C94%2C85%2C106%2C0%2C100:16 scaffold41982 SAMTools SNP 105060 105060 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41982 SAMTools SNP 105078 105078 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold41982 SAMTools SNP 105090 105090 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41982 SAMTools SNP 105632 105632 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 109813 109813 4.14 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0324%3BAF1%3D0.5024%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-8%3BPV4%3D1%2C0.0003%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C20:25 scaffold41982 SAMTools SNP 109854 109854 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D531%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C181%2C22%2C309%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C2.2e-190%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 110246 110246 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 111346 111346 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold41982 SAMTools SNP 112491 112491 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.35%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41982 SAMTools SNP 112515 112515 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41982 SAMTools SNP 112516 112516 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41982 SAMTools SNP 112612 112612 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C1.8e-06%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C35:28 scaffold41982 SAMTools SNP 112636 112636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 112707 112707 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C150%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.6e-76%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C255%2C0:99 scaffold41982 SAMTools SNP 114161 114161 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41982 SAMTools SNP 114565 114565 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C16%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D3.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold41982 SAMTools SNP 114585 114585 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C17%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1.5e-08%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold41982 SAMTools SNP 117467 117467 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 117504 117504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41982 SAMTools SNP 118338 118338 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 118383 118383 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C46%2C7%2C30%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.019%2C6.1e-51%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold41982 SAMTools SNP 118496 118496 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C15%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.088%2C4.5e-09%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C83:86 scaffold41982 SAMTools SNP 118879 118879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41982 SAMTools SNP 121240 121240 39.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold41982 SAMTools SNP 121315 121315 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C362%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C255%2C0:99 scaffold41982 SAMTools SNP 121347 121347 25.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold41982 SAMTools SNP 121797 121797 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D937%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C876%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 124234 124234 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41982 SAMTools SNP 124321 124321 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41982 SAMTools SNP 124335 124335 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C154%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41982 SAMTools SNP 124853 124853 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C8%2C47%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.13%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C67%2C0:99 scaffold41982 SAMTools SNP 125120 125120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1914%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C772%2C124%2C891%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.9e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41988 SAMTools SNP 3844 3844 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41988 SAMTools SNP 3886 3886 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold41988 SAMTools SNP 3932 3932 66.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold41988 SAMTools SNP 3976 3976 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold41988 SAMTools SNP 4270 4270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41988 SAMTools SNP 4318 4318 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold41988 SAMTools SNP 5675 5675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41988 SAMTools SNP 5704 5704 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.27%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C66:69 scaffold41988 SAMTools SNP 6390 6390 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold41988 SAMTools SNP 8618 8618 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41988 SAMTools SNP 8810 8810 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41988 SAMTools SNP 9127 9127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41988 SAMTools SNP 9174 9174 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold41988 SAMTools SNP 10553 10553 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41988 SAMTools SNP 10583 10583 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41988 SAMTools SNP 10589 10589 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41988 SAMTools SNP 10830 10830 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41988 SAMTools SNP 11241 11241 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41988 SAMTools SNP 14043 14043 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C220:78 scaffold41988 SAMTools SNP 14526 14526 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.63%2C5.4e-12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold41988 SAMTools SNP 20076 20076 43.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold41988 SAMTools SNP 24525 24525 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold41988 SAMTools SNP 26050 26050 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.48%2C8.1e-19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold41988 SAMTools SNP 43648 43648 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.17%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C156:43 scaffold41988 SAMTools SNP 43822 43822 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold41988 SAMTools SNP 45090 45090 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold41988 SAMTools SNP 48510 48510 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold41988 SAMTools SNP 49257 49257 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.22%2C5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C248:92 scaffold41988 SAMTools SNP 49284 49284 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C34%2C14%2C25%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.65%2C1.7e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold41988 SAMTools SNP 55546 55546 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41988 SAMTools SNP 55560 55560 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41988 SAMTools SNP 56429 56429 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41988 SAMTools SNP 56460 56460 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41988 SAMTools SNP 57347 57347 26.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold41988 SAMTools SNP 57606 57606 5.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold41988 SAMTools SNP 78636 78636 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41988 SAMTools SNP 88727 88727 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.2%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold41988 SAMTools SNP 90377 90377 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.011%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold41988 SAMTools SNP 115362 115362 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold41994 SAMTools SNP 405 405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 3723 3723 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.015%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold41994 SAMTools SNP 3729 3729 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.67%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold41994 SAMTools SNP 4843 4843 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41994 SAMTools SNP 5550 5550 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41994 SAMTools SNP 5567 5567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C5%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0048%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold41994 SAMTools SNP 5894 5894 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 5921 5921 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 5951 5951 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41994 SAMTools SNP 6108 6108 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41994 SAMTools SNP 6123 6123 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 6210 6210 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold41994 SAMTools SNP 6624 6624 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41994 SAMTools SNP 6650 6650 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold41994 SAMTools SNP 7047 7047 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold41994 SAMTools SNP 7132 7132 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold41994 SAMTools SNP 7143 7143 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold41994 SAMTools SNP 7507 7507 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41994 SAMTools SNP 7568 7568 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41994 SAMTools SNP 8325 8325 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold41994 SAMTools SNP 13146 13146 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold41994 SAMTools SNP 16711 16711 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold41994 SAMTools SNP 17586 17586 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C25%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.39%2C4.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold41994 SAMTools SNP 21613 21613 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41994 SAMTools SNP 21632 21632 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41994 SAMTools SNP 22217 22217 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D48%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold41994 SAMTools SNP 22682 22682 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold41994 SAMTools SNP 22694 22694 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.29%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C153:51 scaffold41994 SAMTools SNP 22748 22748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C21%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold41994 SAMTools SNP 23324 23324 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 23327 23327 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 24034 24034 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41994 SAMTools SNP 24334 24334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41994 SAMTools SNP 24337 24337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold41994 SAMTools SNP 24606 24606 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold41994 SAMTools SNP 24681 24681 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.6%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold41994 SAMTools SNP 25086 25086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41994 SAMTools SNP 25695 25695 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41994 SAMTools SNP 25713 25713 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold41994 SAMTools SNP 26347 26347 113 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold41994 SAMTools SNP 26413 26413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C1%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold41994 SAMTools SNP 26789 26789 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 27085 27085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold41994 SAMTools SNP 27149 27149 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0012%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold41994 SAMTools SNP 27293 27293 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0087%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C222:44 scaffold41994 SAMTools SNP 27383 27383 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 28679 28679 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold41994 SAMTools SNP 29448 29448 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41994 SAMTools SNP 29463 29463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 30797 30797 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.49%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C121:54 scaffold41994 SAMTools SNP 30965 30965 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 30977 30977 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.018%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold41994 SAMTools SNP 31554 31554 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold41994 SAMTools SNP 31632 31632 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.63%2C2.2e-09%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold41994 SAMTools SNP 31647 31647 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.12%2C0.025%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold41994 SAMTools SNP 31650 31650 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C0.068%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold41994 SAMTools SNP 32126 32126 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 32198 32198 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41994 SAMTools SNP 32204 32204 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C238:99 scaffold41994 SAMTools SNP 33198 33198 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 33827 33827 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41994 SAMTools SNP 34456 34456 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold41994 SAMTools SNP 35199 35199 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold41994 SAMTools SNP 35964 35964 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41994 SAMTools SNP 38090 38090 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.29%2C0.22%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold41994 SAMTools SNP 38162 38162 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold41994 SAMTools SNP 38171 38171 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold41994 SAMTools SNP 38831 38831 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold41994 SAMTools SNP 38876 38876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41994 SAMTools SNP 44898 44898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41994 SAMTools SNP 44919 44919 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold41994 SAMTools SNP 45772 45772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold41994 SAMTools SNP 48045 48045 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold41994 SAMTools SNP 48048 48048 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 48219 48219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41994 SAMTools SNP 48689 48689 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41994 SAMTools SNP 48747 48747 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41994 SAMTools SNP 48762 48762 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41994 SAMTools SNP 49230 49230 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold41994 SAMTools SNP 49250 49250 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41994 SAMTools SNP 49299 49299 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold41994 SAMTools SNP 49926 49926 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.095%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C158:58 scaffold41994 SAMTools SNP 49935 49935 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41994 SAMTools SNP 50404 50404 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold41994 SAMTools SNP 51584 51584 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold41994 SAMTools SNP 51641 51641 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold41994 SAMTools SNP 52926 52926 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.26%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold41994 SAMTools SNP 52941 52941 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold41994 SAMTools SNP 53368 53368 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold41994 SAMTools SNP 53371 53371 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.13%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41994 SAMTools SNP 54517 54517 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.049%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold41994 SAMTools SNP 60728 60728 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold41994 SAMTools SNP 67261 67261 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold41994 SAMTools SNP 69507 69507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 69524 69524 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C34%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold41994 SAMTools SNP 71013 71013 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C130:33 scaffold41994 SAMTools SNP 72700 72700 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C3%2C66%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.29%2C2e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold41994 SAMTools SNP 72760 72760 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C32%2C7%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.79%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold41994 SAMTools SNP 73107 73107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C66%2C10%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 73197 73197 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold41994 SAMTools SNP 73943 73943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41994 SAMTools SNP 74850 74850 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41994 SAMTools SNP 75583 75583 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41994 SAMTools SNP 75620 75620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C21%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold41994 SAMTools SNP 75667 75667 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.51%2C9.4e-05%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41994 SAMTools SNP 75678 75678 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41994 SAMTools SNP 75717 75717 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.075%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 76237 76237 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41994 SAMTools SNP 76723 76723 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C136%2C8%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 77208 77208 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C38%2C43%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D5.2e-09%2C2.4e-14%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold41994 SAMTools SNP 77986 77986 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C255%2C0:99 scaffold41994 SAMTools SNP 78721 78721 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold41994 SAMTools SNP 78730 78730 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.16%2C0.048%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold41994 SAMTools SNP 78772 78772 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C1%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.64%2C0.28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41994 SAMTools SNP 79725 79725 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 79787 79787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 79792 79792 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.64%2C0.24%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41994 SAMTools SNP 80070 80070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C35%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 80205 80205 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.00051%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold41994 SAMTools SNP 80616 80616 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C1%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold41994 SAMTools SNP 80749 80749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 80775 80775 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 81174 81174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C25%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41994 SAMTools SNP 81234 81234 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41994 SAMTools SNP 81836 81836 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41994 SAMTools SNP 82054 82054 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41994 SAMTools SNP 82090 82090 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 82470 82470 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C59%2C12%2C23%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.00019%2C0.34%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold41994 SAMTools SNP 82529 82529 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C13%2C118%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41994 SAMTools SNP 82858 82858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold41994 SAMTools SNP 82866 82866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C35%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold41994 SAMTools SNP 83141 83141 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41994 SAMTools SNP 83223 83223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41994 SAMTools SNP 83595 83595 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.6%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold41994 SAMTools SNP 83653 83653 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 83911 83911 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41994 SAMTools SNP 84409 84409 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D2.2e-05%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold41994 SAMTools SNP 84412 84412 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.66%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41994 SAMTools SNP 84642 84642 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C27%2C3%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold41994 SAMTools SNP 84649 84649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C23%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold41994 SAMTools SNP 84687 84687 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C9%2C19%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.44%2C1%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold41994 SAMTools SNP 84732 84732 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C29%2C22%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.00088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold41994 SAMTools SNP 85102 85102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C36%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold41994 SAMTools SNP 85309 85309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 85362 85362 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 85382 85382 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.51%2C0.3%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold41994 SAMTools SNP 85727 85727 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.0075%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 86036 86036 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold41994 SAMTools SNP 86099 86099 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C60%2C0:99 scaffold41994 SAMTools SNP 87092 87092 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold41994 SAMTools SNP 87328 87328 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C10%2C3%3BMQ%3D43%3BFQ%3D127%3BPV4%3D0.42%2C1%2C0.34%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold41994 SAMTools SNP 87374 87374 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C29%2C7%3BMQ%3D42%3BFQ%3D175%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C202:99 scaffold41994 SAMTools SNP 87375 87375 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C12%2C8%3BMQ%3D41%3BFQ%3D148%3BPV4%3D0.12%2C1%2C0.017%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C251:99 scaffold41994 SAMTools SNP 87738 87738 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C39%3BMQ%3D48%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41994 SAMTools SNP 87739 87739 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C4%2C12%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 88837 88837 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D46%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C225:99 scaffold41994 SAMTools SNP 88864 88864 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D47%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C231:99 scaffold41994 SAMTools SNP 89462 89462 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold41994 SAMTools SNP 89504 89504 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41994 SAMTools SNP 89937 89937 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.28%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold41994 SAMTools SNP 89980 89980 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41994 SAMTools SNP 90153 90153 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.36%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold41994 SAMTools SNP 90629 90629 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold41994 SAMTools SNP 90638 90638 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C12%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0033%2C0.24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold41994 SAMTools SNP 90647 90647 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C11%2C11%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.012%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold41994 SAMTools SNP 90969 90969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold41994 SAMTools SNP 91128 91128 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C25:28 scaffold41994 SAMTools SNP 91193 91193 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41994 SAMTools SNP 91531 91531 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.7e-08%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C158:40 scaffold41994 SAMTools SNP 91588 91588 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C21%2C0:39 scaffold41994 SAMTools SNP 91669 91669 111 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C54%2C0:99 scaffold41994 SAMTools SNP 92044 92044 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold41994 SAMTools SNP 92810 92810 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41994 SAMTools SNP 92827 92827 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41994 SAMTools SNP 93150 93150 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold41994 SAMTools SNP 93177 93177 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold41994 SAMTools SNP 93252 93252 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41994 SAMTools SNP 93279 93279 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.036%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold41994 SAMTools SNP 93575 93575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.042%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold41994 SAMTools SNP 93677 93677 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.021%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold41994 SAMTools SNP 94041 94041 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold41994 SAMTools SNP 97170 97170 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold41994 SAMTools SNP 99489 99489 53.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold41994 SAMTools SNP 101591 101591 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.14%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C146:50 scaffold41994 SAMTools SNP 102603 102603 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0044%2C7.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold41994 SAMTools SNP 102945 102945 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C18%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C8.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold41994 SAMTools SNP 103350 103350 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C7.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold41994 SAMTools SNP 103854 103854 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0013%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C123:31 scaffold41994 SAMTools SNP 105059 105059 76.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold41994 SAMTools SNP 106234 106234 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C93%2C0:99 scaffold41994 SAMTools SNP 107111 107111 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold41994 SAMTools SNP 107242 107242 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold41994 SAMTools SNP 107363 107363 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold41994 SAMTools SNP 107547 107547 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold41994 SAMTools SNP 107868 107868 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold41994 SAMTools SNP 107929 107929 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold41994 SAMTools SNP 108120 108120 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C102%2C0:99 scaffold41994 SAMTools SNP 108269 108269 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold41994 SAMTools SNP 109005 109005 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C107:44 scaffold41994 SAMTools SNP 109659 109659 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.23%2C7.8e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold41994 SAMTools SNP 113502 113502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 116977 116977 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 117002 117002 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41994 SAMTools SNP 117302 117302 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold41994 SAMTools SNP 117395 117395 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.034%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold41994 SAMTools SNP 117424 117424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold41994 SAMTools SNP 117580 117580 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold41994 SAMTools SNP 117657 117657 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold41994 SAMTools SNP 118541 118541 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold41994 SAMTools SNP 118736 118736 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C79:82 scaffold41994 SAMTools SNP 118838 118838 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold41994 SAMTools SNP 119027 119027 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold41994 SAMTools SNP 119299 119299 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold41994 SAMTools SNP 119350 119350 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41994 SAMTools SNP 121940 121940 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold41994 SAMTools SNP 122000 122000 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold41994 SAMTools SNP 122443 122443 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41994 SAMTools SNP 122445 122445 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41994 SAMTools SNP 122873 122873 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41994 SAMTools SNP 122877 122877 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41994 SAMTools SNP 123006 123006 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C21%2C0:39 scaffold41994 SAMTools SNP 123391 123391 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold41994 SAMTools SNP 123567 123567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 123583 123583 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 124048 124048 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 124135 124135 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0024%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 124150 124150 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 124344 124344 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.08%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41994 SAMTools SNP 124975 124975 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold41994 SAMTools SNP 125681 125681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold41994 SAMTools SNP 125684 125684 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.064%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold41994 SAMTools SNP 125973 125973 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold41994 SAMTools SNP 126455 126455 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C0%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00015%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold41994 SAMTools SNP 137394 137394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold41994 SAMTools SNP 138688 138688 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold41994 SAMTools SNP 138689 138689 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold41998 SAMTools SNP 2156 2156 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold41998 SAMTools SNP 2513 2513 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold41998 SAMTools SNP 2522 2522 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C239:99 scaffold41998 SAMTools SNP 2980 2980 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold41998 SAMTools SNP 3088 3088 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D39%3BFQ%3D4.77%3BPV4%3D0.4%2C0.0028%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C88:28 scaffold41998 SAMTools SNP 3124 3124 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D39%3BFQ%3D11.3%3BPV4%3D0.4%2C0.0013%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C77:40 scaffold41998 SAMTools SNP 3196 3196 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.79%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C24:27 scaffold41998 SAMTools SNP 3268 3268 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold41998 SAMTools SNP 3922 3922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C1%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold41998 SAMTools SNP 4135 4135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold41998 SAMTools SNP 4865 4865 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.025%2C1%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold41998 SAMTools SNP 4925 4925 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold41998 SAMTools SNP 5431 5431 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41998 SAMTools SNP 5870 5870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold41998 SAMTools SNP 5891 5891 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.44%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold41998 SAMTools SNP 5927 5927 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold41998 SAMTools SNP 6137 6137 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41998 SAMTools SNP 6141 6141 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41998 SAMTools SNP 6350 6350 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 6367 6367 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 7805 7805 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C27%2C0:51 scaffold41998 SAMTools SNP 7811 7811 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C67:70 scaffold41998 SAMTools SNP 8248 8248 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold41998 SAMTools SNP 8556 8556 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41998 SAMTools SNP 8632 8632 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C5%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold41998 SAMTools SNP 9295 9295 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C119:72 scaffold41998 SAMTools SNP 9481 9481 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.013%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C194:99 scaffold41998 SAMTools SNP 9522 9522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold41998 SAMTools SNP 9839 9839 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41998 SAMTools SNP 9870 9870 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 10049 10049 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41998 SAMTools SNP 10325 10325 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41998 SAMTools SNP 10966 10966 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41998 SAMTools SNP 10969 10969 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold41998 SAMTools SNP 11207 11207 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.49%2C1%2C5.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold41998 SAMTools SNP 11409 11409 85.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold41998 SAMTools SNP 11429 11429 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold41998 SAMTools SNP 11449 11449 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C39%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.33%2C0.0028%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold41998 SAMTools SNP 11621 11621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41998 SAMTools SNP 15082 15082 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold41998 SAMTools SNP 51847 51847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold41998 SAMTools SNP 53552 53552 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41998 SAMTools SNP 56034 56034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold41998 SAMTools SNP 57866 57866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold41998 SAMTools SNP 57926 57926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold41998 SAMTools SNP 58756 58756 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41998 SAMTools SNP 58876 58876 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.33%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold41998 SAMTools SNP 58903 58903 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C148:99 scaffold41998 SAMTools SNP 59420 59420 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C2%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold41998 SAMTools SNP 59748 59748 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.26%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold41998 SAMTools SNP 60993 60993 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold41998 SAMTools SNP 62639 62639 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold41998 SAMTools SNP 63281 63281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold41998 SAMTools SNP 63505 63505 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41998 SAMTools SNP 63766 63766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold41998 SAMTools SNP 65218 65218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C37%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold41998 SAMTools SNP 65341 65341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold41998 SAMTools SNP 65574 65574 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.069%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold41998 SAMTools SNP 65642 65642 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C84%2C0:99 scaffold41998 SAMTools SNP 65681 65681 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C99:99 scaffold41998 SAMTools SNP 66256 66256 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold41998 SAMTools SNP 66805 66805 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C7%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C214:91 scaffold41998 SAMTools SNP 69584 69584 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41998 SAMTools SNP 74052 74052 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold41998 SAMTools SNP 84586 84586 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C18%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0014%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold41998 SAMTools SNP 84637 84637 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold41998 SAMTools SNP 91146 91146 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold41998 SAMTools SNP 91896 91896 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold41998 SAMTools SNP 92087 92087 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 105793 105793 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold41998 SAMTools SNP 107662 107662 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41998 SAMTools SNP 107670 107670 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold41998 SAMTools SNP 108143 108143 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold41998 SAMTools SNP 108148 108148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold41998 SAMTools SNP 108735 108735 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold41998 SAMTools SNP 109175 109175 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C0.021%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold41998 SAMTools SNP 111655 111655 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C0.48%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold41998 SAMTools SNP 111680 111680 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C11%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.056%2C0.49%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold41998 SAMTools SNP 111707 111707 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.2%2C1.8e-06%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold41998 SAMTools SNP 112152 112152 55.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold41998 SAMTools SNP 112449 112449 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 112962 112962 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold41998 SAMTools SNP 122484 122484 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 122495 122495 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 123352 123352 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C192:99 scaffold41998 SAMTools SNP 123391 123391 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C177:99 scaffold41998 SAMTools SNP 123520 123520 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold41998 SAMTools SNP 123802 123802 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 123831 123831 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 123838 123838 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold41998 SAMTools SNP 123911 123911 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold41998 SAMTools SNP 126147 126147 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold41998 SAMTools SNP 126708 126708 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold41998 SAMTools SNP 138478 138478 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C60%2C0:99 scaffold41998 SAMTools SNP 138520 138520 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 138577 138577 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold41998 SAMTools SNP 139769 139769 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 139771 139771 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold41998 SAMTools SNP 140849 140849 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42 SAMTools SNP 79121 79121 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold42 SAMTools SNP 81466 81466 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold42 SAMTools SNP 82697 82697 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42 SAMTools SNP 125791 125791 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D1%2C0.03%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C182:41 scaffold42 SAMTools SNP 129390 129390 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42 SAMTools SNP 129659 129659 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.15%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42 SAMTools SNP 131996 131996 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 132007 132007 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 132390 132390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C194%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 132453 132453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C27%2C15%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 132715 132715 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C19%2C184%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 133330 133330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C115%2C1%2C228%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold42 SAMTools SNP 134098 134098 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42 SAMTools SNP 138551 138551 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold42 SAMTools SNP 139065 139065 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 139118 139118 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold42 SAMTools SNP 139323 139323 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42 SAMTools SNP 139335 139335 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42 SAMTools SNP 139342 139342 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42 SAMTools SNP 139361 139361 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42 SAMTools SNP 139988 139988 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42 SAMTools SNP 140313 140313 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42 SAMTools SNP 140334 140334 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.031%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold42 SAMTools SNP 140338 140338 17.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold42 SAMTools SNP 142399 142399 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold42 SAMTools SNP 142436 142436 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C0.017%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42 SAMTools SNP 144973 144973 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D30%3BFQ%3D10.4%3BPV4%3D0.061%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C37:40 scaffold42 SAMTools SNP 148331 148331 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42 SAMTools SNP 154382 154382 59.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold42 SAMTools SNP 154385 154385 47.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D29%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C1%2C0:4 scaffold42 SAMTools SNP 154681 154681 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C36%2C0:69 scaffold42 SAMTools SNP 156305 156305 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D5.02%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C39:30 scaffold42 SAMTools SNP 163799 163799 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 163841 163841 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42 SAMTools SNP 164399 164399 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42 SAMTools SNP 168192 168192 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D91.9%3BPV4%3D0.37%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C119:99 scaffold42 SAMTools SNP 168476 168476 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42 SAMTools SNP 168977 168977 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold42 SAMTools SNP 170158 170158 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D26%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C45%2C0:87 scaffold42 SAMTools SNP 172966 172966 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C33%2C0:63 scaffold42 SAMTools SNP 173005 173005 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42 SAMTools SNP 182618 182618 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold42 SAMTools SNP 184315 184315 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 184318 184318 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 188240 188240 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42 SAMTools SNP 198114 198114 52 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C72%2C0%2C82%2C56%2C79:99 scaffold42 SAMTools SNP 198289 198289 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C33%2C0:63 scaffold42 SAMTools SNP 199589 199589 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C90%2C0:99 scaffold42 SAMTools SNP 199711 199711 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42 SAMTools SNP 200521 200521 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42 SAMTools SNP 202251 202251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42 SAMTools SNP 203302 203302 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold42 SAMTools SNP 217591 217591 99.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold42 SAMTools SNP 233210 233210 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C36%2C0:69 scaffold42 SAMTools SNP 239526 239526 39.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold42 SAMTools SNP 243927 243927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42 SAMTools SNP 254514 254514 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42 SAMTools SNP 254762 254762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C32%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42 SAMTools SNP 255940 255940 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42 SAMTools SNP 256415 256415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42 SAMTools SNP 256422 256422 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42 SAMTools SNP 256873 256873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C12%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42 SAMTools SNP 256984 256984 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C66%2C0:99 scaffold42 SAMTools SNP 258286 258286 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.0017%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42 SAMTools SNP 258703 258703 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C33%2C0:63 scaffold42 SAMTools SNP 262519 262519 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42 SAMTools SNP 271843 271843 208 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C15%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C184%2C0%2C223%2C148%2C220:99 scaffold42 SAMTools SNP 272062 272062 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C108%2C0:99 scaffold42 SAMTools SNP 278657 278657 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D35%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C124:60 scaffold42 SAMTools SNP 282489 282489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D45%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42 SAMTools SNP 282956 282956 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42 SAMTools SNP 287730 287730 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D33%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C123%2C0:99 scaffold42 SAMTools SNP 287844 287844 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold42 SAMTools SNP 290434 290434 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold42 SAMTools SNP 296591 296591 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C154:66 scaffold42 SAMTools SNP 332485 332485 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 332502 332502 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 332682 332682 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42 SAMTools SNP 332707 332707 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42 SAMTools SNP 399564 399564 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold42 SAMTools SNP 400401 400401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C30%2C35%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 401617 401617 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 404266 404266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C21%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 404267 404267 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C21%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 404738 404738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42 SAMTools SNP 404825 404825 69.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold42 SAMTools SNP 404860 404860 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C205%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 405781 405781 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C27%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 406088 406088 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.055%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 407699 407699 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C37%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 407910 407910 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 407942 407942 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C244:99 scaffold42 SAMTools SNP 407943 407943 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42 SAMTools SNP 410384 410384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 410776 410776 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42 SAMTools SNP 411099 411099 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C255%2C0:99 scaffold42 SAMTools SNP 412021 412021 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C71%2C4%2C56%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.41%2C7.3e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42 SAMTools SNP 412075 412075 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C11%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.25%2C7.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42 SAMTools SNP 413053 413053 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D656%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C2.4e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C29:32 scaffold42 SAMTools SNP 416164 416164 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold42 SAMTools SNP 417583 417583 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 417951 417951 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 417957 417957 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C8%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42 SAMTools SNP 423488 423488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C352%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 428167 428167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C7%3BMQ%3D49%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42 SAMTools SNP 428703 428703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C97%3BMQ%3D42%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 428745 428745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C91%3BMQ%3D38%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 428807 428807 6.98 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42 SAMTools SNP 428954 428954 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold42 SAMTools SNP 429029 429029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C45%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 429485 429485 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C93%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C255%2C0:99 scaffold42 SAMTools SNP 429506 429506 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C85%3BMQ%3D1%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C255%2C0:99 scaffold42 SAMTools SNP 429590 429590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C97%2C45%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 429915 429915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 430146 430146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C196%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 430254 430254 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42 SAMTools SNP 430496 430496 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C15%2C52%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.027%2C1%2C1%2C3.6e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold42 SAMTools SNP 430793 430793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C319%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 430828 430828 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D519%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C367%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 437827 437827 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C72%2C0:99 scaffold42 SAMTools SNP 459236 459236 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C87%2C0:99 scaffold42 SAMTools SNP 460699 460699 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C8%2C18%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.57%2C3.4e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold42 SAMTools SNP 460737 460737 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C7%2C22%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.75%2C2.6e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42 SAMTools SNP 463735 463735 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C144%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C255%2C0:99 scaffold42 SAMTools SNP 464044 464044 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42 SAMTools SNP 464316 464316 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold42 SAMTools SNP 464358 464358 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.053%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C203:99 scaffold42 SAMTools SNP 468263 468263 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold42 SAMTools SNP 468834 468834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C25%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42 SAMTools SNP 469261 469261 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42 SAMTools SNP 470055 470055 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.019%2C1%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42 SAMTools SNP 471702 471702 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold42 SAMTools SNP 472092 472092 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42 SAMTools SNP 473180 473180 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C79:82 scaffold42 SAMTools SNP 473270 473270 106 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.014%2C0.23%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold42 SAMTools SNP 474609 474609 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42 SAMTools SNP 476505 476505 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42 SAMTools SNP 477107 477107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42 SAMTools SNP 480447 480447 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42 SAMTools SNP 489350 489350 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42 SAMTools SNP 490446 490446 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C221:99 scaffold42 SAMTools SNP 491485 491485 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42 SAMTools SNP 491725 491725 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.075%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C221:99 scaffold42 SAMTools SNP 491841 491841 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42 SAMTools SNP 491842 491842 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42 SAMTools SNP 492852 492852 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42 SAMTools SNP 492914 492914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42 SAMTools SNP 494040 494040 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42 SAMTools SNP 494100 494100 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42 SAMTools SNP 495262 495262 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42 SAMTools SNP 495301 495301 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42 SAMTools SNP 495811 495811 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42 SAMTools SNP 498617 498617 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold42 SAMTools SNP 499576 499576 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42 SAMTools SNP 499816 499816 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C221:99 scaffold42 SAMTools SNP 501613 501613 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42 SAMTools SNP 501803 501803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42 SAMTools SNP 502220 502220 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C1%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42 SAMTools SNP 503071 503071 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold42 SAMTools SNP 503216 503216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42 SAMTools SNP 503239 503239 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42 SAMTools SNP 504114 504114 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C25%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42 SAMTools SNP 506009 506009 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42 SAMTools SNP 506013 506013 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42 SAMTools SNP 506059 506059 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold42 SAMTools SNP 506348 506348 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42 SAMTools SNP 506415 506415 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 506857 506857 8.66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C22%3BMQ%3D50%3BFQ%3D-7.03%3BPV4%3D0.083%2C3.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C21:25 scaffold42 SAMTools SNP 511584 511584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.5%2C0.25%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold42 SAMTools SNP 512472 512472 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C0%2C21%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1.3e-07%2C4.2e-09%2C1%2C4.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42 SAMTools SNP 512589 512589 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00063%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42 SAMTools SNP 520395 520395 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold42 SAMTools SNP 558481 558481 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42 SAMTools SNP 560950 560950 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42022 SAMTools SNP 3493 3493 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42022 SAMTools SNP 3523 3523 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42022 SAMTools SNP 4305 4305 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42022 SAMTools SNP 4855 4855 96.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold42022 SAMTools SNP 4936 4936 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42022 SAMTools SNP 5184 5184 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42022 SAMTools SNP 5235 5235 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42022 SAMTools SNP 5265 5265 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C21%2C0:39 scaffold42022 SAMTools SNP 5716 5716 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C33%2C0:63 scaffold42022 SAMTools SNP 5761 5761 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D47%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42022 SAMTools SNP 5809 5809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C13%3BMQ%3D48%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42022 SAMTools SNP 6302 6302 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold42022 SAMTools SNP 9573 9573 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C45%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D3.9e-06%2C0.16%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold42022 SAMTools SNP 9588 9588 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42022 SAMTools SNP 10029 10029 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42022 SAMTools SNP 39909 39909 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.037%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42022 SAMTools SNP 39926 39926 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold42022 SAMTools SNP 63239 63239 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42022 SAMTools SNP 68881 68881 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D56.5%3BPV4%3D1%2C0.34%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C93:86 scaffold42022 SAMTools SNP 71062 71062 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold42022 SAMTools SNP 71133 71133 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42022 SAMTools SNP 71532 71532 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42022 SAMTools SNP 71571 71571 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42030 SAMTools SNP 479 479 4.45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C0%2C3%3BMQ%3D18%3BFQ%3D-39%3BPV4%3D0.0022%2C0.0013%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C12%2C0:11 scaffold42030 SAMTools SNP 30043 30043 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C54%2C2%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42030 SAMTools SNP 30881 30881 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42030 SAMTools SNP 31802 31802 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C63%2C0:99 scaffold42030 SAMTools SNP 32547 32547 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42030 SAMTools SNP 32890 32890 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42030 SAMTools SNP 34204 34204 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C16%2C475%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42030 SAMTools SNP 39503 39503 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C26%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold42030 SAMTools SNP 40123 40123 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C67%2C104%2C77%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.74%2C2e-224%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42030 SAMTools SNP 40189 40189 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C83%2C17%2C117%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.081%2C2.1e-174%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold42030 SAMTools SNP 42206 42206 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42030 SAMTools SNP 58363 58363 3.07 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D21%2C76%2C0%2C35%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D0.001%2C1%2C1%2C9.3e-20;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C136%2C131%2C197%2C0%2C142:3 scaffold42030 SAMTools SNP 81772 81772 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42030 SAMTools SNP 83493 83493 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42030 SAMTools SNP 84908 84908 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42030 SAMTools SNP 84923 84923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42030 SAMTools SNP 88927 88927 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42030 SAMTools SNP 88977 88977 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42030 SAMTools SNP 91501 91501 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold42030 SAMTools SNP 91517 91517 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42030 SAMTools SNP 91519 91519 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold42030 SAMTools SNP 91785 91785 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00014%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold42030 SAMTools SNP 91792 91792 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C22%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold42030 SAMTools SNP 92429 92429 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42030 SAMTools SNP 96229 96229 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C46%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold42030 SAMTools SNP 96245 96245 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C46%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.24%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold42030 SAMTools SNP 96264 96264 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42032 SAMTools SNP 21459 21459 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C152:99 scaffold42032 SAMTools SNP 21519 21519 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C255%2C0:99 scaffold42032 SAMTools SNP 21613 21613 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C63%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C3.3e-75%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42032 SAMTools SNP 22350 22350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 22422 22422 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42032 SAMTools SNP 22819 22819 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42032 SAMTools SNP 24195 24195 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42032 SAMTools SNP 24228 24228 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42032 SAMTools SNP 24237 24237 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42032 SAMTools SNP 24273 24273 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42032 SAMTools SNP 24327 24327 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 24728 24728 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42032 SAMTools SNP 24734 24734 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 24752 24752 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 24757 24757 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C254:99 scaffold42032 SAMTools SNP 24821 24821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42032 SAMTools SNP 27676 27676 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C75%2C3%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42032 SAMTools SNP 27688 27688 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C60%2C3%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42032 SAMTools SNP 28351 28351 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C42%2C0:80 scaffold42032 SAMTools SNP 39585 39585 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 39615 39615 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42032 SAMTools SNP 40558 40558 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42032 SAMTools SNP 40574 40574 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 44741 44741 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42032 SAMTools SNP 45864 45864 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.047%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold42032 SAMTools SNP 47105 47105 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold42032 SAMTools SNP 47177 47177 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42032 SAMTools SNP 48894 48894 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42032 SAMTools SNP 49138 49138 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42032 SAMTools SNP 49809 49809 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42032 SAMTools SNP 49829 49829 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42032 SAMTools SNP 50370 50370 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42032 SAMTools SNP 50372 50372 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42032 SAMTools SNP 50383 50383 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42032 SAMTools SNP 50389 50389 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42032 SAMTools SNP 50392 50392 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42032 SAMTools SNP 50442 50442 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42032 SAMTools SNP 52910 52910 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42032 SAMTools SNP 52931 52931 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42032 SAMTools SNP 52970 52970 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C30%2C0:57 scaffold42032 SAMTools SNP 53498 53498 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42032 SAMTools SNP 55084 55084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42032 SAMTools SNP 56033 56033 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.39%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold42032 SAMTools SNP 56045 56045 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42032 SAMTools SNP 56063 56063 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42032 SAMTools SNP 59443 59443 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42032 SAMTools SNP 59484 59484 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 60951 60951 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold42032 SAMTools SNP 61400 61400 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 62282 62282 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42032 SAMTools SNP 64288 64288 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42032 SAMTools SNP 65620 65620 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42032 SAMTools SNP 65640 65640 87.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C15%2C0:27 scaffold42032 SAMTools SNP 65863 65863 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42032 SAMTools SNP 66360 66360 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold42032 SAMTools SNP 67866 67866 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42032 SAMTools SNP 69366 69366 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42032 SAMTools SNP 74198 74198 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C6%3BMQ%3D49%3BFQ%3D205%3BPV4%3D0.16%2C0.067%2C0.2%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold42032 SAMTools SNP 74282 74282 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C0.25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold42032 SAMTools SNP 74324 74324 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D48%3BFQ%3D25%3BPV4%3D1%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42032 SAMTools SNP 74345 74345 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D48%3BFQ%3D25%3BPV4%3D1%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42032 SAMTools SNP 78227 78227 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42032 SAMTools SNP 78230 78230 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42032 SAMTools SNP 79569 79569 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42032 SAMTools SNP 80200 80200 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42032 SAMTools SNP 80215 80215 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42032 SAMTools SNP 82567 82567 6.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold42032 SAMTools SNP 82651 82651 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42032 SAMTools SNP 83278 83278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42032 SAMTools SNP 83347 83347 37.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C7:10 scaffold42032 SAMTools SNP 83416 83416 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.3%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold42032 SAMTools SNP 84033 84033 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42032 SAMTools SNP 84368 84368 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42032 SAMTools SNP 84434 84434 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42032 SAMTools SNP 84455 84455 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42032 SAMTools SNP 84941 84941 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.33%2C0.06%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42032 SAMTools SNP 85403 85403 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold42032 SAMTools SNP 85561 85561 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D59.9%3BPV4%3D1%2C0.0009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C102:90 scaffold42032 SAMTools SNP 88125 88125 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold42032 SAMTools SNP 88264 88264 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C24%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42032 SAMTools SNP 88288 88288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.32%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold42032 SAMTools SNP 89373 89373 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42032 SAMTools SNP 89403 89403 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C93%2C0:99 scaffold42032 SAMTools SNP 89409 89409 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42032 SAMTools SNP 89520 89520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C1%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold42032 SAMTools SNP 89538 89538 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C3%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold42032 SAMTools SNP 95517 95517 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42032 SAMTools SNP 95527 95527 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42032 SAMTools SNP 99033 99033 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C46%2C151%2C19%3BMQ%3D50%3BFQ%3D114%3BPV4%3D3.1e-13%2C6e-147%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42032 SAMTools SNP 99375 99375 31.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C8.6e-09%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C11:14 scaffold42032 SAMTools SNP 99384 99384 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42032 SAMTools SNP 99390 99390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C54%2C4%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42032 SAMTools SNP 99765 99765 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D719%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C227%2C128%2C238%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42032 SAMTools SNP 99814 99814 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C177%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42032 SAMTools SNP 99832 99832 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C18%2C25%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C17%2C0:31 scaffold42032 SAMTools SNP 99952 99952 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1815%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D862%2C176%2C618%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42032 SAMTools SNP 100452 100452 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3118%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C824%2C1439%2C375%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-202%2C1%2C1%2C1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42032 SAMTools SNP 100482 100482 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3151%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D228%2C852%2C1446%2C414%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-204%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42032 SAMTools SNP 138953 138953 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42032 SAMTools SNP 139019 139019 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42032 SAMTools SNP 139993 139993 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42040 SAMTools SNP 1055 1055 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold42040 SAMTools SNP 1779 1779 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C2%2C14%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C6.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42040 SAMTools SNP 1811 1811 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42040 SAMTools SNP 2388 2388 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42040 SAMTools SNP 2472 2472 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C1%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.65%2C7.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42040 SAMTools SNP 2994 2994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42040 SAMTools SNP 5157 5157 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42040 SAMTools SNP 6245 6245 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D18%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C75%2C0:99 scaffold42040 SAMTools SNP 6266 6266 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D18%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C72%2C0:99 scaffold42040 SAMTools SNP 8017 8017 7.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42040 SAMTools SNP 13357 13357 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C30%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42040 SAMTools SNP 13378 13378 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42040 SAMTools SNP 14667 14667 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.21%2C0.1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42040 SAMTools SNP 14681 14681 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C2%2C38%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42040 SAMTools SNP 14738 14738 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C1%2C41%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold42040 SAMTools SNP 15097 15097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C84%2C20%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 15895 15895 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C40%2C18%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 16413 16413 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C18%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C242:99 scaffold42040 SAMTools SNP 16425 16425 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C18%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C242:99 scaffold42040 SAMTools SNP 22763 22763 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 23177 23177 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C22%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 24403 24403 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.28%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42040 SAMTools SNP 25138 25138 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C3%2C18%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.015%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold42040 SAMTools SNP 25176 25176 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 25414 25414 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C7%2C31%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.17%2C2e-59%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C188:89 scaffold42040 SAMTools SNP 25456 25456 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42040 SAMTools SNP 26711 26711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42040 SAMTools SNP 27119 27119 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42040 SAMTools SNP 28346 28346 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42040 SAMTools SNP 28886 28886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D237%2C8%2C235%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 29418 29418 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 29574 29574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C63%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 29595 29595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C62%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1.3e-05%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 29870 29870 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C42%2C0:81 scaffold42040 SAMTools SNP 29922 29922 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold42040 SAMTools SNP 30815 30815 49.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold42040 SAMTools SNP 30824 30824 31.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold42040 SAMTools SNP 32965 32965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42040 SAMTools SNP 33025 33025 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42040 SAMTools SNP 33049 33049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42040 SAMTools SNP 36214 36214 34.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold42040 SAMTools SNP 36928 36928 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C13%2C0%3BMQ%3D24%3BFQ%3D47%3BPV4%3D0.15%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C164:77 scaffold42040 SAMTools SNP 37421 37421 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold42040 SAMTools SNP 37493 37493 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C25%2C1%3BMQ%3D46%3BFQ%3D22%3BPV4%3D0.25%2C0.25%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C49:52 scaffold42040 SAMTools SNP 38108 38108 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42040 SAMTools SNP 39042 39042 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42040 SAMTools SNP 39056 39056 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold42040 SAMTools SNP 39128 39128 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold42040 SAMTools SNP 39492 39492 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D47%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42040 SAMTools SNP 39565 39565 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D42%3BFQ%3D77%3BPV4%3D0.2%2C0.17%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C107:99 scaffold42040 SAMTools SNP 39747 39747 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42040 SAMTools SNP 40466 40466 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D19%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C87%2C0:99 scaffold42040 SAMTools SNP 40496 40496 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D29%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C45%2C0:87 scaffold42040 SAMTools SNP 40922 40922 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold42040 SAMTools SNP 41033 41033 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.5%2C5.8e-08%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C245:36 scaffold42040 SAMTools SNP 41078 41078 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C113:99 scaffold42040 SAMTools SNP 41289 41289 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C251:99 scaffold42040 SAMTools SNP 41319 41319 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.083%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold42040 SAMTools SNP 41430 41430 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.63%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold42040 SAMTools SNP 41475 41475 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42040 SAMTools SNP 42259 42259 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42040 SAMTools SNP 42286 42286 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C8%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.25%2C0.0013%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42040 SAMTools SNP 42373 42373 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold42040 SAMTools SNP 42600 42600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42040 SAMTools SNP 42630 42630 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold42040 SAMTools SNP 42633 42633 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.024%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold42040 SAMTools SNP 43362 43362 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.4e-26%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C207:49 scaffold42040 SAMTools SNP 47029 47029 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C22%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 47035 47035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C34%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold42040 SAMTools SNP 47107 47107 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C6%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42040 SAMTools SNP 47725 47725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C42%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 48581 48581 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C16%2C44%2C13%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C2.1e-83%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold42040 SAMTools SNP 70857 70857 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42040 SAMTools SNP 72192 72192 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C21%2C0:39 scaffold42040 SAMTools SNP 72490 72490 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C4.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42040 SAMTools SNP 72729 72729 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.48%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold42040 SAMTools SNP 73227 73227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C16%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold42040 SAMTools SNP 73964 73964 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42040 SAMTools SNP 82207 82207 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 82468 82468 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C43%3BMQ%3D49%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42040 SAMTools SNP 82860 82860 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 84896 84896 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.008%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold42040 SAMTools SNP 85209 85209 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold42040 SAMTools SNP 85230 85230 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42040 SAMTools SNP 85729 85729 59.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold42040 SAMTools SNP 86846 86846 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.04%2C0.28%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C240:99 scaffold42040 SAMTools SNP 87198 87198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.27%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 87245 87245 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C38%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.48%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold42040 SAMTools SNP 87478 87478 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C189:69 scaffold42040 SAMTools SNP 92662 92662 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C10%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C202%2C0:99 scaffold42040 SAMTools SNP 93693 93693 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0242%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold42040 SAMTools SNP 93845 93845 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.02%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42040 SAMTools SNP 93887 93887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C24%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold42040 SAMTools SNP 94041 94041 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42040 SAMTools SNP 94205 94205 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42040 SAMTools SNP 94289 94289 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42040 SAMTools SNP 94433 94433 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42040 SAMTools SNP 94517 94517 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C16%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.74%2C1%2C0.0001%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42040 SAMTools SNP 95727 95727 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C204:99 scaffold42040 SAMTools SNP 95758 95758 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.015%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C180:99 scaffold42040 SAMTools SNP 96105 96105 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C86%2C46%3BMQ%3D32%3BFQ%3D-282%3BPV4%3D0.55%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42040 SAMTools SNP 96170 96170 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C79%2C41%3BMQ%3D28%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42040 SAMTools SNP 96184 96184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C48%3BMQ%3D30%3BFQ%3D-170%3BPV4%3D1%2C0.4%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold42040 SAMTools SNP 102224 102224 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42040 SAMTools SNP 102231 102231 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42040 SAMTools SNP 103952 103952 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D43%3BFQ%3D21%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C235:51 scaffold42040 SAMTools SNP 104160 104160 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42040 SAMTools SNP 104164 104164 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42040 SAMTools SNP 104326 104326 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D44%3BFQ%3D-5.45%3BPV4%3D0.44%2C0.21%2C0.31%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C23:26 scaffold42040 SAMTools SNP 104381 104381 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold42040 SAMTools SNP 128856 128856 16.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42046 SAMTools SNP 655 655 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42046 SAMTools SNP 692 692 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42046 SAMTools SNP 759 759 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold42046 SAMTools SNP 771 771 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.32%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C223:99 scaffold42046 SAMTools SNP 1343 1343 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42046 SAMTools SNP 3862 3862 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.59%2C2.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42046 SAMTools SNP 4621 4621 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C3.1e-10%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42046 SAMTools SNP 4790 4790 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C213:60 scaffold42046 SAMTools SNP 6222 6222 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42046 SAMTools SNP 7956 7956 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C178%2C0%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 7997 7997 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42046 SAMTools SNP 12119 12119 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42046 SAMTools SNP 20167 20167 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42046 SAMTools SNP 34006 34006 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C266%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42046 SAMTools SNP 35500 35500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D680%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C197%2C93%2C167%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.3%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 35798 35798 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.081%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42046 SAMTools SNP 36894 36894 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42046 SAMTools SNP 37171 37171 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42046 SAMTools SNP 37196 37196 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42046 SAMTools SNP 40862 40862 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C218:99 scaffold42046 SAMTools SNP 41046 41046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42046 SAMTools SNP 45929 45929 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42046 SAMTools SNP 46285 46285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42046 SAMTools SNP 47011 47011 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42046 SAMTools SNP 48271 48271 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold42046 SAMTools SNP 48836 48836 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C110:64 scaffold42046 SAMTools SNP 48928 48928 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.58%2C5.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C143:99 scaffold42046 SAMTools SNP 49370 49370 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42046 SAMTools SNP 49713 49713 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42046 SAMTools SNP 51590 51590 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 53160 53160 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C67%2C28%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 53975 53975 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42046 SAMTools SNP 54172 54172 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42046 SAMTools SNP 55189 55189 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42046 SAMTools SNP 57725 57725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C12%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42046 SAMTools SNP 57809 57809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C11%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 60083 60083 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42046 SAMTools SNP 60128 60128 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C11%2C73%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C4.6e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 63767 63767 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.017%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 63776 63776 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42046 SAMTools SNP 63800 63800 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0029%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold42046 SAMTools SNP 64248 64248 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 64290 64290 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.33%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold42046 SAMTools SNP 64302 64302 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C236%2C209:37 scaffold42046 SAMTools SNP 66091 66091 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 66121 66121 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 66151 66151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 66833 66833 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 66871 66871 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42046 SAMTools SNP 70104 70104 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C9%2C15%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C1.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42046 SAMTools SNP 70145 70145 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C10%2C15%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.61%2C2.3e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold42046 SAMTools SNP 70194 70194 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold42046 SAMTools SNP 70217 70217 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.56%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42046 SAMTools SNP 70427 70427 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C233:99 scaffold42046 SAMTools SNP 70508 70508 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C11:14 scaffold42046 SAMTools SNP 70520 70520 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42046 SAMTools SNP 72489 72489 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.018%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42046 SAMTools SNP 72976 72976 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42046 SAMTools SNP 73035 73035 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 73465 73465 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 73507 73507 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold42046 SAMTools SNP 73528 73528 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42046 SAMTools SNP 73618 73618 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.058%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 73914 73914 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42046 SAMTools SNP 76810 76810 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.22%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 77058 77058 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C17%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold42046 SAMTools SNP 79694 79694 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C17%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C250:99 scaffold42046 SAMTools SNP 82462 82462 3.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42046 SAMTools SNP 82558 82558 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C42%2C0:81 scaffold42046 SAMTools SNP 83239 83239 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42046 SAMTools SNP 84023 84023 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42046 SAMTools SNP 92258 92258 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42046 SAMTools SNP 92814 92814 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold42046 SAMTools SNP 92892 92892 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C27%2C0:51 scaffold42046 SAMTools SNP 92897 92897 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C182:89 scaffold42046 SAMTools SNP 93470 93470 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold42046 SAMTools SNP 93507 93507 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42046 SAMTools SNP 94529 94529 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42046 SAMTools SNP 94563 94563 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42046 SAMTools SNP 94936 94936 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42046 SAMTools SNP 94950 94950 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42046 SAMTools SNP 95020 95020 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42046 SAMTools SNP 95407 95407 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold42046 SAMTools SNP 95464 95464 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold42046 SAMTools SNP 95967 95967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold42046 SAMTools SNP 95980 95980 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold42046 SAMTools SNP 95997 95997 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold42046 SAMTools SNP 96168 96168 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42046 SAMTools SNP 96180 96180 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold42046 SAMTools SNP 96182 96182 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C8.5e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42046 SAMTools SNP 96437 96437 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42046 SAMTools SNP 96524 96524 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.46%2C0.42%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold42046 SAMTools SNP 97357 97357 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42046 SAMTools SNP 97561 97561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42046 SAMTools SNP 97876 97876 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42046 SAMTools SNP 97910 97910 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C24%2C0:45 scaffold42046 SAMTools SNP 97915 97915 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold42046 SAMTools SNP 98066 98066 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold42046 SAMTools SNP 98225 98225 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42046 SAMTools SNP 98539 98539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42046 SAMTools SNP 99225 99225 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C231:69 scaffold42046 SAMTools SNP 100881 100881 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42046 SAMTools SNP 101944 101944 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42046 SAMTools SNP 103312 103312 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42046 SAMTools SNP 103362 103362 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 104122 104122 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.17%2C0.0062%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42046 SAMTools SNP 105341 105341 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42046 SAMTools SNP 105371 105371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42046 SAMTools SNP 115543 115543 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42046 SAMTools SNP 116625 116625 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.3e-09%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C112:81 scaffold42046 SAMTools SNP 118645 118645 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42046 SAMTools SNP 118666 118666 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42046 SAMTools SNP 127094 127094 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D14%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C84%2C0:99 scaffold42046 SAMTools SNP 129686 129686 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C6%3BMQ%3D47%3BFQ%3D120%3BPV4%3D0.47%2C1%2C0.074%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C195:99 scaffold42046 SAMTools SNP 133481 133481 23.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold42046 SAMTools SNP 137704 137704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42046 SAMTools SNP 137741 137741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42048 SAMTools SNP 2470 2470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 5281 5281 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold42048 SAMTools SNP 5913 5913 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C45%2C0:87 scaffold42048 SAMTools SNP 7090 7090 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 7116 7116 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42048 SAMTools SNP 7120 7120 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42048 SAMTools SNP 7704 7704 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C191:99 scaffold42048 SAMTools SNP 7737 7737 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42048 SAMTools SNP 7779 7779 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42048 SAMTools SNP 8534 8534 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42048 SAMTools SNP 10349 10349 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C59%2C3%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.13%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42048 SAMTools SNP 10414 10414 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C21%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42048 SAMTools SNP 13913 13913 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42048 SAMTools SNP 13960 13960 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.041%2C0.016%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42048 SAMTools SNP 13972 13972 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42048 SAMTools SNP 13993 13993 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C13%2C14%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold42048 SAMTools SNP 14507 14507 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.008%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42048 SAMTools SNP 14521 14521 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0037%2C0.07%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold42048 SAMTools SNP 14807 14807 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C47%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42048 SAMTools SNP 14822 14822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C18%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42048 SAMTools SNP 15752 15752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C20%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42048 SAMTools SNP 15770 15770 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C6%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.16%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold42048 SAMTools SNP 15838 15838 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-163%3BPV4%3D0.2%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C136%2C0:99 scaffold42048 SAMTools SNP 20515 20515 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C10%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.026%2C0.022%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold42048 SAMTools SNP 20659 20659 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.061%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold42048 SAMTools SNP 20662 20662 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold42048 SAMTools SNP 20665 20665 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold42048 SAMTools SNP 21058 21058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C67%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.57%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold42048 SAMTools SNP 21871 21871 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold42048 SAMTools SNP 21874 21874 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C67%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold42048 SAMTools SNP 22069 22069 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C66%2C3%2C21%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.4%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold42048 SAMTools SNP 22100 22100 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C57%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold42048 SAMTools SNP 22138 22138 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42048 SAMTools SNP 22158 22158 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold42048 SAMTools SNP 22161 22161 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42048 SAMTools SNP 23082 23082 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42048 SAMTools SNP 31195 31195 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.62%2C3.2e-19%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42048 SAMTools SNP 31336 31336 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C129:91 scaffold42048 SAMTools SNP 31447 31447 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.5e-05%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C85:88 scaffold42048 SAMTools SNP 32168 32168 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.54%2C0.038%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42048 SAMTools SNP 32391 32391 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold42048 SAMTools SNP 32924 32924 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42048 SAMTools SNP 32949 32949 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42048 SAMTools SNP 32958 32958 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42048 SAMTools SNP 35221 35221 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold42048 SAMTools SNP 35248 35248 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42048 SAMTools SNP 44371 44371 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42048 SAMTools SNP 44438 44438 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42048 SAMTools SNP 44987 44987 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D48%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C194:96 scaffold42048 SAMTools SNP 45044 45044 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42048 SAMTools SNP 45089 45089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C12%3BMQ%3D49%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42048 SAMTools SNP 45404 45404 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42048 SAMTools SNP 45870 45870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42048 SAMTools SNP 45891 45891 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C2%3BMQ%3D46%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold42048 SAMTools SNP 46493 46493 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D41%3BFQ%3D53.8%3BPV4%3D1%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C82:84 scaffold42048 SAMTools SNP 47468 47468 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C1%3BMQ%3D48%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold42048 SAMTools SNP 49309 49309 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42048 SAMTools SNP 49359 49359 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42048 SAMTools SNP 50393 50393 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42048 SAMTools SNP 50411 50411 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42048 SAMTools SNP 51070 51070 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 52409 52409 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42048 SAMTools SNP 52949 52949 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42048 SAMTools SNP 53282 53282 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold42048 SAMTools SNP 53950 53950 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.43%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C107:99 scaffold42048 SAMTools SNP 53971 53971 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42048 SAMTools SNP 55196 55196 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42048 SAMTools SNP 55667 55667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42048 SAMTools SNP 55673 55673 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42048 SAMTools SNP 56011 56011 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42048 SAMTools SNP 56030 56030 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42048 SAMTools SNP 56665 56665 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C164:99 scaffold42048 SAMTools SNP 56713 56713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42048 SAMTools SNP 56785 56785 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.24%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C127:99 scaffold42048 SAMTools SNP 57977 57977 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.12%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42048 SAMTools SNP 57981 57981 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42048 SAMTools SNP 58385 58385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42048 SAMTools SNP 58405 58405 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C14%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.23%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold42048 SAMTools SNP 58609 58609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42048 SAMTools SNP 60438 60438 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C10%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.34%2C0.38%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold42048 SAMTools SNP 60465 60465 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42048 SAMTools SNP 60498 60498 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold42048 SAMTools SNP 61362 61362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C22%3BMQ%3D49%3BFQ%3D-73%3BPV4%3D0.33%2C1%2C0.43%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold42048 SAMTools SNP 62144 62144 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D40%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42048 SAMTools SNP 63345 63345 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C0%3BMQ%3D42%3BFQ%3D52%3BPV4%3D0.051%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42048 SAMTools SNP 63462 63462 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D39%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C39%2C0:75 scaffold42048 SAMTools SNP 65087 65087 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42048 SAMTools SNP 65734 65734 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42048 SAMTools SNP 65797 65797 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold42048 SAMTools SNP 66267 66267 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42048 SAMTools SNP 66342 66342 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D47%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C9:12 scaffold42048 SAMTools SNP 89864 89864 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 90927 90927 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 90957 90957 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 93324 93324 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42048 SAMTools SNP 94130 94130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42048 SAMTools SNP 94200 94200 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.2%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C242:99 scaffold42048 SAMTools SNP 94339 94339 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.13%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42048 SAMTools SNP 94363 94363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42048 SAMTools SNP 94468 94468 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.043%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42048 SAMTools SNP 94498 94498 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.026%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42048 SAMTools SNP 98509 98509 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C174:99 scaffold42048 SAMTools SNP 98524 98524 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.4%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C164:99 scaffold42048 SAMTools SNP 98539 98539 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.054%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold42048 SAMTools SNP 98614 98614 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42048 SAMTools SNP 98626 98626 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C39%2C0:75 scaffold42048 SAMTools SNP 102642 102642 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold42048 SAMTools SNP 103804 103804 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42048 SAMTools SNP 114472 114472 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.1%3BPV4%3D1%2C7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C29:32 scaffold42048 SAMTools SNP 116878 116878 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C66:43 scaffold42048 SAMTools SNP 116886 116886 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold42048 SAMTools SNP 116937 116937 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C29:32 scaffold42048 SAMTools SNP 117792 117792 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold42048 SAMTools SNP 118570 118570 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42048 SAMTools SNP 120483 120483 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42048 SAMTools SNP 120555 120555 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42048 SAMTools SNP 124846 124846 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42048 SAMTools SNP 124850 124850 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42048 SAMTools SNP 125296 125296 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42048 SAMTools SNP 126374 126374 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42048 SAMTools SNP 127582 127582 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 129075 129075 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42048 SAMTools SNP 129265 129265 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42048 SAMTools SNP 129268 129268 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42048 SAMTools SNP 129576 129576 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 129586 129586 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C26:29 scaffold42048 SAMTools SNP 130174 130174 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.21%2C0.0058%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42048 SAMTools SNP 134974 134974 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42048 SAMTools SNP 135540 135540 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42048 SAMTools SNP 139923 139923 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42048 SAMTools SNP 141393 141393 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42060 SAMTools SNP 1192 1192 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42060 SAMTools SNP 8676 8676 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0064%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42060 SAMTools SNP 11176 11176 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42060 SAMTools SNP 11708 11708 99.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold42060 SAMTools SNP 11738 11738 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold42060 SAMTools SNP 12640 12640 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42060 SAMTools SNP 12689 12689 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42060 SAMTools SNP 15490 15490 224 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C238:99 scaffold42060 SAMTools SNP 15495 15495 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C254:99 scaffold42060 SAMTools SNP 15534 15534 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C30%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold42060 SAMTools SNP 26999 26999 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C3%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.7%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold42060 SAMTools SNP 27119 27119 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold42060 SAMTools SNP 27338 27338 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold42060 SAMTools SNP 27389 27389 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.0015%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C151:99 scaffold42060 SAMTools SNP 27416 27416 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42060 SAMTools SNP 27458 27458 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.2%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold42060 SAMTools SNP 29801 29801 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42060 SAMTools SNP 29824 29824 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold42060 SAMTools SNP 30463 30463 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C24%2C0:45 scaffold42060 SAMTools SNP 30511 30511 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold42060 SAMTools SNP 30574 30574 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.33%2C8.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C197:46 scaffold42060 SAMTools SNP 30658 30658 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C19%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.25%2C3.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42060 SAMTools SNP 30727 30727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C6%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C3.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42060 SAMTools SNP 35714 35714 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C87%2C0:99 scaffold42060 SAMTools SNP 35750 35750 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold42060 SAMTools SNP 35883 35883 67 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C205%2C0%2C80%2C166%2C77:99 scaffold42060 SAMTools SNP 35894 35894 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C255%2C0:99 scaffold42060 SAMTools SNP 35978 35978 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C54%2C0:99 scaffold42060 SAMTools SNP 35993 35993 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C77%2C6%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.6e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42060 SAMTools SNP 37158 37158 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold42060 SAMTools SNP 37203 37203 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42060 SAMTools SNP 37314 37314 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42060 SAMTools SNP 37335 37335 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42060 SAMTools SNP 78069 78069 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold42060 SAMTools SNP 79498 79498 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42060 SAMTools SNP 83467 83467 24.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold42060 SAMTools SNP 83713 83713 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42060 SAMTools SNP 83731 83731 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42060 SAMTools SNP 84910 84910 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C126%2C0:99 scaffold42060 SAMTools SNP 84964 84964 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C108%2C0:99 scaffold42060 SAMTools SNP 85556 85556 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42060 SAMTools SNP 86158 86158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42060 SAMTools SNP 86179 86179 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42060 SAMTools SNP 86203 86203 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C14%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold42060 SAMTools SNP 87655 87655 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42060 SAMTools SNP 87667 87667 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42060 SAMTools SNP 88014 88014 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42060 SAMTools SNP 88032 88032 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42060 SAMTools SNP 100568 100568 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.33%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42060 SAMTools SNP 100583 100583 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.17%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42060 SAMTools SNP 101454 101454 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42060 SAMTools SNP 101464 101464 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42060 SAMTools SNP 134402 134402 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C188:79 scaffold42060 SAMTools SNP 134421 134421 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C176:52 scaffold42060 SAMTools SNP 135343 135343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42060 SAMTools SNP 135346 135346 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C19%2C11%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold42060 SAMTools SNP 135415 135415 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42062 SAMTools SNP 1502 1502 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42062 SAMTools SNP 4502 4502 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42062 SAMTools SNP 4675 4675 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42062 SAMTools SNP 4906 4906 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42062 SAMTools SNP 5385 5385 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C27%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C4.2e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C164:99 scaffold42062 SAMTools SNP 17133 17133 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.25%2C4.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42062 SAMTools SNP 17246 17246 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.36%2C2.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42062 SAMTools SNP 17889 17889 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C36%2C50%2C11%3BMQ%3D50%3BFQ%3D144%3BPV4%3D4.7e-05%2C6.1e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42062 SAMTools SNP 18174 18174 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C4%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.37%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42062 SAMTools SNP 18389 18389 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42062 SAMTools SNP 20452 20452 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42062 SAMTools SNP 21518 21518 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold42062 SAMTools SNP 21554 21554 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C210:99 scaffold42062 SAMTools SNP 29965 29965 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold42062 SAMTools SNP 30218 30218 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42062 SAMTools SNP 30319 30319 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C30%2C0:57 scaffold42062 SAMTools SNP 38026 38026 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42062 SAMTools SNP 38427 38427 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42062 SAMTools SNP 39434 39434 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold42062 SAMTools SNP 39704 39704 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C46%2C71%2C26%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.028%2C5.9e-159%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42062 SAMTools SNP 39959 39959 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42062 SAMTools SNP 39995 39995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C37%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42062 SAMTools SNP 41792 41792 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold42062 SAMTools SNP 41873 41873 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42062 SAMTools SNP 41882 41882 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42062 SAMTools SNP 43909 43909 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42062 SAMTools SNP 44278 44278 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C210%2C11%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42062 SAMTools SNP 65716 65716 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42062 SAMTools SNP 67392 67392 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42062 SAMTools SNP 67437 67437 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42062 SAMTools SNP 67515 67515 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42062 SAMTools SNP 67737 67737 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42062 SAMTools SNP 68022 68022 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42062 SAMTools SNP 68035 68035 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42062 SAMTools SNP 68311 68311 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00013%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C161:30 scaffold42062 SAMTools SNP 70590 70590 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42062 SAMTools SNP 70765 70765 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42062 SAMTools SNP 76019 76019 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.015%2C3.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C152:99 scaffold42062 SAMTools SNP 76912 76912 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42062 SAMTools SNP 76972 76972 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42062 SAMTools SNP 78881 78881 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42062 SAMTools SNP 78893 78893 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42062 SAMTools SNP 78989 78989 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42062 SAMTools SNP 81305 81305 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.39%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold42062 SAMTools SNP 81784 81784 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42062 SAMTools SNP 82804 82804 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold42062 SAMTools SNP 82831 82831 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42062 SAMTools SNP 104840 104840 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42062 SAMTools SNP 106304 106304 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42070 SAMTools SNP 7338 7338 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C243:99 scaffold42070 SAMTools SNP 10408 10408 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42070 SAMTools SNP 11069 11069 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42070 SAMTools SNP 11115 11115 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42070 SAMTools SNP 23476 23476 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42070 SAMTools SNP 23741 23741 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C12%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42070 SAMTools SNP 23742 23742 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C47%2C10%3BMQ%3D50%3BFQ%3D-125%3BPV4%3D0.039%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C98%2C0:99 scaffold42070 SAMTools SNP 23898 23898 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D4.9e-06%2C7.6e-26%2C1%2C4.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold42070 SAMTools SNP 23960 23960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42070 SAMTools SNP 24963 24963 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C6%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0094%2C7.8e-06%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42070 SAMTools SNP 24969 24969 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C6%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.016%2C0.00014%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42070 SAMTools SNP 30788 30788 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42070 SAMTools SNP 30811 30811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold42070 SAMTools SNP 33033 33033 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42070 SAMTools SNP 33703 33703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42070 SAMTools SNP 33724 33724 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold42070 SAMTools SNP 34234 34234 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C48%2C0:93 scaffold42070 SAMTools SNP 45500 45500 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42070 SAMTools SNP 45519 45519 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42070 SAMTools SNP 47868 47868 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42070 SAMTools SNP 47888 47888 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42070 SAMTools SNP 84372 84372 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.02%2C6.6e-12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42070 SAMTools SNP 84582 84582 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C5%2C11%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.72%2C1.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42070 SAMTools SNP 101356 101356 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42070 SAMTools SNP 103324 103324 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42070 SAMTools SNP 103422 103422 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C27%2C0:44 scaffold42070 SAMTools SNP 106473 106473 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42070 SAMTools SNP 123541 123541 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42070 SAMTools SNP 129336 129336 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42070 SAMTools SNP 130043 130043 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42070 SAMTools SNP 130045 130045 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42070 SAMTools SNP 130381 130381 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42070 SAMTools SNP 134520 134520 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42070 SAMTools SNP 134532 134532 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42076 SAMTools SNP 32408 32408 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42076 SAMTools SNP 34070 34070 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42076 SAMTools SNP 88942 88942 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C54%2C0:99 scaffold42076 SAMTools SNP 89584 89584 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold42076 SAMTools SNP 89604 89604 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42076 SAMTools SNP 92807 92807 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C183:99 scaffold42076 SAMTools SNP 92876 92876 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42076 SAMTools SNP 92892 92892 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42086 SAMTools SNP 6778 6778 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42086 SAMTools SNP 6848 6848 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42086 SAMTools SNP 6953 6953 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42086 SAMTools SNP 6962 6962 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42086 SAMTools SNP 84094 84094 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C0.00054%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42090 SAMTools SNP 5274 5274 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold42090 SAMTools SNP 6544 6544 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold42090 SAMTools SNP 7464 7464 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42090 SAMTools SNP 7551 7551 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 7853 7853 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42090 SAMTools SNP 8607 8607 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42090 SAMTools SNP 8696 8696 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42090 SAMTools SNP 8713 8713 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42090 SAMTools SNP 9829 9829 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42090 SAMTools SNP 9874 9874 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold42090 SAMTools SNP 10027 10027 58.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold42090 SAMTools SNP 11630 11630 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42090 SAMTools SNP 11754 11754 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42090 SAMTools SNP 15367 15367 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42090 SAMTools SNP 15409 15409 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C70%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 15650 15650 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C28%2C9%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42090 SAMTools SNP 15671 15671 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C63%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 15698 15698 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42090 SAMTools SNP 17790 17790 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.088%2C0.38%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42090 SAMTools SNP 17819 17819 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42090 SAMTools SNP 18110 18110 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42090 SAMTools SNP 18875 18875 14.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold42090 SAMTools SNP 20063 20063 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42090 SAMTools SNP 20119 20119 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C45%2C0:87 scaffold42090 SAMTools SNP 20127 20127 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 20962 20962 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 21459 21459 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42090 SAMTools SNP 21717 21717 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42090 SAMTools SNP 21837 21837 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-6.23%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C22:26 scaffold42090 SAMTools SNP 23303 23303 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 23585 23585 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42090 SAMTools SNP 23801 23801 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 24837 24837 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 24869 24869 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42090 SAMTools SNP 25558 25558 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42090 SAMTools SNP 26079 26079 7.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold42090 SAMTools SNP 27341 27341 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 28247 28247 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 28403 28403 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42090 SAMTools SNP 28741 28741 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 28756 28756 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42090 SAMTools SNP 28793 28793 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C54:63 scaffold42090 SAMTools SNP 28818 28818 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42090 SAMTools SNP 30121 30121 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42090 SAMTools SNP 30487 30487 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42090 SAMTools SNP 30545 30545 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42090 SAMTools SNP 35667 35667 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.36%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold42090 SAMTools SNP 35768 35768 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C12%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold42090 SAMTools SNP 35962 35962 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42090 SAMTools SNP 36092 36092 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold42090 SAMTools SNP 36602 36602 26.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold42090 SAMTools SNP 40493 40493 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C60%2C0:99 scaffold42090 SAMTools SNP 42441 42441 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C33%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.011%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 42487 42487 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C35%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 42921 42921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C56%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 43250 43250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C22%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 44278 44278 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0022%2C5.9e-06%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42090 SAMTools SNP 46078 46078 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42090 SAMTools SNP 46578 46578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 46620 46620 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.29%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 46638 46638 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.016%2C0.046%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42090 SAMTools SNP 46779 46779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42090 SAMTools SNP 47315 47315 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C1%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.66%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42090 SAMTools SNP 48546 48546 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C23%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 48846 48846 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C0%2C12%3BMQ%3D50%3BFQ%3D106%3BPV4%3D2.9e-05%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42090 SAMTools SNP 48865 48865 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C1%2C12%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold42090 SAMTools SNP 49525 49525 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C148%2C16%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0083%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 51068 51068 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C12%2C31%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.78%2C4.9e-52%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold42090 SAMTools SNP 51674 51674 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42090 SAMTools SNP 52001 52001 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.4%2C0.042%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C238:99 scaffold42090 SAMTools SNP 52570 52570 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C43%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold42090 SAMTools SNP 52584 52584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C46%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42090 SAMTools SNP 53736 53736 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42090 SAMTools SNP 54296 54296 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 54790 54790 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C24%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C253:99 scaffold42090 SAMTools SNP 55073 55073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42090 SAMTools SNP 55182 55182 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.00057%2C2.7e-11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C210:73 scaffold42090 SAMTools SNP 55217 55217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C66%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold42090 SAMTools SNP 55620 55620 224 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C35%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C243:99 scaffold42090 SAMTools SNP 56067 56067 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold42090 SAMTools SNP 56076 56076 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0088%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold42090 SAMTools SNP 56579 56579 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42090 SAMTools SNP 57133 57133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42090 SAMTools SNP 57152 57152 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.00037%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold42090 SAMTools SNP 57198 57198 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42090 SAMTools SNP 57371 57371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42090 SAMTools SNP 57419 57419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.085%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 57711 57711 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold42090 SAMTools SNP 57717 57717 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.17%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C158:99 scaffold42090 SAMTools SNP 57723 57723 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.52%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C152:91 scaffold42090 SAMTools SNP 57801 57801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42090 SAMTools SNP 58145 58145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 58803 58803 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C22%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C253:99 scaffold42090 SAMTools SNP 60966 60966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 61023 61023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 61944 61944 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C34%3BMQ%3D50%3BFQ%3D-211%3BPV4%3D0.45%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42090 SAMTools SNP 62052 62052 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C19%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C248:99 scaffold42090 SAMTools SNP 62829 62829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42090 SAMTools SNP 62835 62835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42090 SAMTools SNP 62892 62892 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42090 SAMTools SNP 63380 63380 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42090 SAMTools SNP 64453 64453 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C16%2C11%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.092%2C1.2e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42090 SAMTools SNP 65611 65611 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 65615 65615 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 66044 66044 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold42090 SAMTools SNP 66239 66239 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C108%2C0:99 scaffold42090 SAMTools SNP 67055 67055 14.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold42090 SAMTools SNP 67667 67667 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C6%2C14%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.17%2C2.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold42090 SAMTools SNP 67970 67970 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.39%2C4.8e-11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C34%2C0:65 scaffold42090 SAMTools SNP 68165 68165 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold42090 SAMTools SNP 68339 68339 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C50%2C5%2C28%3BMQ%3D36%3BFQ%3D225%3BPV4%3D0.15%2C4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 68858 68858 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C51%2C0:99 scaffold42090 SAMTools SNP 69050 69050 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C99%2C0:99 scaffold42090 SAMTools SNP 69290 69290 18.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold42090 SAMTools SNP 70717 70717 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C180:99 scaffold42090 SAMTools SNP 72262 72262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42090 SAMTools SNP 72352 72352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42090 SAMTools SNP 73233 73233 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42090 SAMTools SNP 73245 73245 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42090 SAMTools SNP 73332 73332 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42090 SAMTools SNP 73631 73631 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42090 SAMTools SNP 73721 73721 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42090 SAMTools SNP 73772 73772 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42090 SAMTools SNP 73799 73799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42090 SAMTools SNP 74016 74016 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.12%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42090 SAMTools SNP 74533 74533 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 75012 75012 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42090 SAMTools SNP 75456 75456 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42090 SAMTools SNP 75477 75477 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold42090 SAMTools SNP 75597 75597 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C0.067%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C169:99 scaffold42090 SAMTools SNP 75603 75603 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C248:99 scaffold42090 SAMTools SNP 75926 75926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42090 SAMTools SNP 76101 76101 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold42090 SAMTools SNP 76197 76197 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42090 SAMTools SNP 76686 76686 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42090 SAMTools SNP 76770 76770 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42090 SAMTools SNP 77071 77071 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.0041%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42090 SAMTools SNP 77082 77082 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42090 SAMTools SNP 79230 79230 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold42090 SAMTools SNP 80938 80938 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold42090 SAMTools SNP 81115 81115 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42090 SAMTools SNP 81158 81158 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42090 SAMTools SNP 82019 82019 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42090 SAMTools SNP 82094 82094 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42090 SAMTools SNP 82134 82134 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42090 SAMTools SNP 83302 83302 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42090 SAMTools SNP 83641 83641 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C82:61 scaffold42090 SAMTools SNP 83674 83674 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42090 SAMTools SNP 84399 84399 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C146:87 scaffold42090 SAMTools SNP 84453 84453 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C42%2C0:81 scaffold42090 SAMTools SNP 84621 84621 41.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold42090 SAMTools SNP 84922 84922 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42090 SAMTools SNP 85042 85042 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42090 SAMTools SNP 85228 85228 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.002%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C85:34 scaffold42090 SAMTools SNP 105923 105923 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold42096 SAMTools SNP 16708 16708 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42096 SAMTools SNP 18181 18181 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.22%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42096 SAMTools SNP 28288 28288 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42096 SAMTools SNP 29603 29603 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.6e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C104:62 scaffold42096 SAMTools SNP 29916 29916 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.46%2C9.1e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C229:99 scaffold42096 SAMTools SNP 29985 29985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42096 SAMTools SNP 30887 30887 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.36%2C3.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42096 SAMTools SNP 34417 34417 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42096 SAMTools SNP 34831 34831 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42096 SAMTools SNP 57649 57649 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42096 SAMTools SNP 60100 60100 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42096 SAMTools SNP 60208 60208 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold42096 SAMTools SNP 60284 60284 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42096 SAMTools SNP 71264 71264 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42096 SAMTools SNP 71269 71269 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42096 SAMTools SNP 71474 71474 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42096 SAMTools SNP 75796 75796 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42096 SAMTools SNP 75869 75869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42096 SAMTools SNP 81092 81092 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold42096 SAMTools SNP 81241 81241 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42096 SAMTools SNP 81430 81430 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 81917 81917 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.00087%2C0.00025%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C235:97 scaffold42096 SAMTools SNP 85915 85915 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 85930 85930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-06%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 86391 86391 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 86419 86419 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42096 SAMTools SNP 87998 87998 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42096 SAMTools SNP 88085 88085 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.8e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42096 SAMTools SNP 88509 88509 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42096 SAMTools SNP 89069 89069 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42096 SAMTools SNP 89093 89093 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42096 SAMTools SNP 89666 89666 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42096 SAMTools SNP 91385 91385 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42096 SAMTools SNP 92219 92219 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42096 SAMTools SNP 93495 93495 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42096 SAMTools SNP 93507 93507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42096 SAMTools SNP 93910 93910 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C1%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.011%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold42096 SAMTools SNP 93922 93922 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.15%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold42096 SAMTools SNP 93943 93943 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold42096 SAMTools SNP 94343 94343 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42096 SAMTools SNP 94388 94388 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42096 SAMTools SNP 94557 94557 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 94593 94593 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C43%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold42096 SAMTools SNP 94623 94623 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 95063 95063 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C38%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42096 SAMTools SNP 95271 95271 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42096 SAMTools SNP 95301 95301 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold42096 SAMTools SNP 95355 95355 85 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C48%2C0%2C107%2C25%2C104:93 scaffold42096 SAMTools SNP 96109 96109 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 96246 96246 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42096 SAMTools SNP 96275 96275 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00038%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42096 SAMTools SNP 96298 96298 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.092%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42096 SAMTools SNP 96450 96450 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42096 SAMTools SNP 96827 96827 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42096 SAMTools SNP 113615 113615 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42096 SAMTools SNP 113873 113873 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42096 SAMTools SNP 114014 114014 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42096 SAMTools SNP 114434 114434 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42096 SAMTools SNP 114912 114912 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42096 SAMTools SNP 114913 114913 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42096 SAMTools SNP 116133 116133 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42096 SAMTools SNP 116220 116220 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42096 SAMTools SNP 116226 116226 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42096 SAMTools SNP 117089 117089 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42096 SAMTools SNP 117176 117176 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42096 SAMTools SNP 117182 117182 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42096 SAMTools SNP 117442 117442 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42096 SAMTools SNP 118739 118739 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42096 SAMTools SNP 128858 128858 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold42096 SAMTools SNP 129347 129347 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42096 SAMTools SNP 130488 130488 89.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C18%2C0:33 scaffold42096 SAMTools SNP 132084 132084 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42096 SAMTools SNP 133304 133304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42096 SAMTools SNP 133701 133701 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42096 SAMTools SNP 134134 134134 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42096 SAMTools SNP 134740 134740 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42096 SAMTools SNP 135177 135177 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42096 SAMTools SNP 135604 135604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C11%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42096 SAMTools SNP 136966 136966 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C36%2C0:69 scaffold42096 SAMTools SNP 137362 137362 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C51%2C0:99 scaffold42096 SAMTools SNP 137731 137731 23.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold42096 SAMTools SNP 138077 138077 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42096 SAMTools SNP 138087 138087 49.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold42096 SAMTools SNP 138216 138216 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42096 SAMTools SNP 141878 141878 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42096 SAMTools SNP 142899 142899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42096 SAMTools SNP 143707 143707 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold42096 SAMTools SNP 145443 145443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42096 SAMTools SNP 146587 146587 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold421 SAMTools SNP 12248 12248 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold421 SAMTools SNP 45804 45804 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold421 SAMTools SNP 61096 61096 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold421 SAMTools SNP 61587 61587 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold421 SAMTools SNP 61607 61607 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.44%2C1%2C5.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold421 SAMTools SNP 61827 61827 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold421 SAMTools SNP 61860 61860 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold421 SAMTools SNP 61962 61962 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold421 SAMTools SNP 62034 62034 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 65846 65846 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold421 SAMTools SNP 65848 65848 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold421 SAMTools SNP 65942 65942 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C4%3BMQ%3D48%3BFQ%3D177%3BPV4%3D0.062%2C0.006%2C0.14%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C207:99 scaffold421 SAMTools SNP 88042 88042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold421 SAMTools SNP 88122 88122 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold421 SAMTools SNP 88165 88165 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold421 SAMTools SNP 88529 88529 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold421 SAMTools SNP 88550 88550 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold421 SAMTools SNP 89333 89333 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold421 SAMTools SNP 90064 90064 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C6:9 scaffold421 SAMTools SNP 90563 90563 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold421 SAMTools SNP 91903 91903 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold421 SAMTools SNP 92891 92891 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold421 SAMTools SNP 92942 92942 34.1 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C188%2C217%2C0%2C202:33 scaffold421 SAMTools SNP 92975 92975 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C154:99 scaffold421 SAMTools SNP 93585 93585 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold421 SAMTools SNP 93892 93892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold421 SAMTools SNP 94203 94203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold421 SAMTools SNP 95606 95606 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold421 SAMTools SNP 95648 95648 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold421 SAMTools SNP 96769 96769 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold421 SAMTools SNP 97609 97609 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold421 SAMTools SNP 98437 98437 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold421 SAMTools SNP 98438 98438 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.027%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold421 SAMTools SNP 99362 99362 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold421 SAMTools SNP 99368 99368 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold421 SAMTools SNP 99374 99374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold421 SAMTools SNP 99457 99457 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold421 SAMTools SNP 100728 100728 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold421 SAMTools SNP 100740 100740 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold421 SAMTools SNP 101414 101414 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold421 SAMTools SNP 101415 101415 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C40%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold421 SAMTools SNP 102622 102622 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold421 SAMTools SNP 103357 103357 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold421 SAMTools SNP 109949 109949 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold421 SAMTools SNP 113591 113591 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold421 SAMTools SNP 113614 113614 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold421 SAMTools SNP 113659 113659 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold421 SAMTools SNP 116253 116253 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold421 SAMTools SNP 169776 169776 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold421 SAMTools SNP 171715 171715 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold421 SAMTools SNP 173533 173533 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold421 SAMTools SNP 173566 173566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold421 SAMTools SNP 174128 174128 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold421 SAMTools SNP 174422 174422 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold421 SAMTools SNP 176605 176605 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold421 SAMTools SNP 176615 176615 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold421 SAMTools SNP 177374 177374 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold421 SAMTools SNP 177384 177384 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold421 SAMTools SNP 177489 177489 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold421 SAMTools SNP 178866 178866 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold421 SAMTools SNP 180562 180562 20.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold421 SAMTools SNP 188416 188416 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold421 SAMTools SNP 188556 188556 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D589%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C588%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold421 SAMTools SNP 198644 198644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D797%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C493%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold421 SAMTools SNP 198671 198671 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D586%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C167%2C44%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.073%2C1%2C5.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold421 SAMTools SNP 198973 198973 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C45%2C12%2C24%3BMQ%3D50%3BFQ%3D64%3BPV4%3D6.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold421 SAMTools SNP 199671 199671 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C248%2C159%2C14%3BMQ%3D50%3BFQ%3D188%3BPV4%3D3.9e-35%2C1%2C1%2C1.3e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold421 SAMTools SNP 211342 211342 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold421 SAMTools SNP 211378 211378 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 211396 211396 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold421 SAMTools SNP 212979 212979 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold421 SAMTools SNP 213018 213018 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold421 SAMTools SNP 220959 220959 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold421 SAMTools SNP 221510 221510 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 221567 221567 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 222684 222684 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 222708 222708 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 222732 222732 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold421 SAMTools SNP 223498 223498 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold421 SAMTools SNP 223506 223506 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold421 SAMTools SNP 223793 223793 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C35:38 scaffold421 SAMTools SNP 225000 225000 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 228904 228904 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold421 SAMTools SNP 230544 230544 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C75%2C0:99 scaffold421 SAMTools SNP 231221 231221 25.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold421 SAMTools SNP 231741 231741 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C7.5e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C29:32 scaffold421 SAMTools SNP 232268 232268 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold421 SAMTools SNP 232481 232481 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.072%2C3.9e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold421 SAMTools SNP 233924 233924 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C32%2C33%2C1%3BMQ%3D39%3BFQ%3D111%3BPV4%3D0.00037%2C1e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C199:99 scaffold421 SAMTools SNP 234244 234244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C63%2C54%2C35%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.22%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold421 SAMTools SNP 237550 237550 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C87%2C1%2C64%3BMQ%3D38%3BFQ%3D196%3BPV4%3D0.43%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C242:99 scaffold421 SAMTools SNP 238898 238898 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C30%2C0:57 scaffold421 SAMTools SNP 238904 238904 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D46%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold421 SAMTools SNP 242270 242270 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold421 SAMTools SNP 242504 242504 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.036%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C142:99 scaffold421 SAMTools SNP 245328 245328 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 245629 245629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold421 SAMTools SNP 247957 247957 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold421 SAMTools SNP 248092 248092 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold421 SAMTools SNP 250132 250132 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C30%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold421 SAMTools SNP 250144 250144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold421 SAMTools SNP 251341 251341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C58%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold421 SAMTools SNP 251401 251401 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold421 SAMTools SNP 254850 254850 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C73%2C0%2C15%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C215:99 scaffold421 SAMTools SNP 264879 264879 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold421 SAMTools SNP 266164 266164 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold421 SAMTools SNP 266187 266187 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold421 SAMTools SNP 267689 267689 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold421 SAMTools SNP 268018 268018 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.073%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold421 SAMTools SNP 268078 268078 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 268760 268760 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold421 SAMTools SNP 269093 269093 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.027%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold421 SAMTools SNP 269736 269736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.48%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold421 SAMTools SNP 269796 269796 55.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold421 SAMTools SNP 269804 269804 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold421 SAMTools SNP 269808 269808 49.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold421 SAMTools SNP 287431 287431 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 289668 289668 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold421 SAMTools SNP 292475 292475 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold421 SAMTools SNP 308052 308052 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold42112 SAMTools SNP 565 565 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00013%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C225:28 scaffold42112 SAMTools SNP 588 588 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold42112 SAMTools SNP 2990 2990 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42112 SAMTools SNP 3082 3082 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42112 SAMTools SNP 3212 3212 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 4046 4046 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42112 SAMTools SNP 4187 4187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42112 SAMTools SNP 6027 6027 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42112 SAMTools SNP 6078 6078 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold42112 SAMTools SNP 9073 9073 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.46%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C197:99 scaffold42112 SAMTools SNP 9169 9169 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42112 SAMTools SNP 11839 11839 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42112 SAMTools SNP 11905 11905 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C32:35 scaffold42112 SAMTools SNP 13611 13611 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42112 SAMTools SNP 14134 14134 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42112 SAMTools SNP 14155 14155 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.4%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C74:50 scaffold42112 SAMTools SNP 14463 14463 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C54:57 scaffold42112 SAMTools SNP 14475 14475 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.055%2C0.11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42112 SAMTools SNP 14484 14484 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.095%2C0.0033%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold42112 SAMTools SNP 14497 14497 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42112 SAMTools SNP 15834 15834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42112 SAMTools SNP 16117 16117 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42112 SAMTools SNP 16132 16132 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold42112 SAMTools SNP 17213 17213 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42112 SAMTools SNP 17216 17216 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42112 SAMTools SNP 18168 18168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.073%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold42112 SAMTools SNP 18240 18240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 18713 18713 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42112 SAMTools SNP 18788 18788 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42112 SAMTools SNP 19256 19256 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42112 SAMTools SNP 19286 19286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.083%2C0.17%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold42112 SAMTools SNP 29418 29418 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42112 SAMTools SNP 29607 29607 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42112 SAMTools SNP 30652 30652 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.7e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C66:36 scaffold42112 SAMTools SNP 36257 36257 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42112 SAMTools SNP 38062 38062 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42112 SAMTools SNP 38834 38834 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42112 SAMTools SNP 39462 39462 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42112 SAMTools SNP 39908 39908 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42112 SAMTools SNP 50689 50689 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold42112 SAMTools SNP 51963 51963 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold42112 SAMTools SNP 54726 54726 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00017%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42112 SAMTools SNP 57667 57667 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold42112 SAMTools SNP 57680 57680 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C0.21%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold42112 SAMTools SNP 57686 57686 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D48%3BFQ%3D16.1%3BPV4%3D1%2C1.5e-05%2C0.025%2C7.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42112 SAMTools SNP 57711 57711 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D48%3BFQ%3D37%3BPV4%3D0.49%2C0.073%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42112 SAMTools SNP 66591 66591 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold42112 SAMTools SNP 69355 69355 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C225%2C3%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-06%2C1%2C0.093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 69382 69382 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C152%2C0%2C82%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1.9e-05%2C1%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold42112 SAMTools SNP 69400 69400 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 69415 69415 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.2%2C0.11%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 74916 74916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1.7e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 74930 74930 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 74949 74949 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 74973 74973 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42112 SAMTools SNP 75000 75000 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C16%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C248:99 scaffold42112 SAMTools SNP 76433 76433 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C229:99 scaffold42112 SAMTools SNP 78039 78039 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42112 SAMTools SNP 78449 78449 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42112 SAMTools SNP 84835 84835 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42112 SAMTools SNP 85328 85328 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42112 SAMTools SNP 86167 86167 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 87329 87329 88.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C15%2C0:27 scaffold42112 SAMTools SNP 87341 87341 70.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C15%2C0:27 scaffold42112 SAMTools SNP 89116 89116 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.06%2C0.0097%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42112 SAMTools SNP 89126 89126 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42112 SAMTools SNP 89146 89146 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42112 SAMTools SNP 89429 89429 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42112 SAMTools SNP 92070 92070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42112 SAMTools SNP 92121 92121 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.67%2C0.49%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold42112 SAMTools SNP 92272 92272 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 92338 92338 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold42112 SAMTools SNP 92821 92821 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C104:47 scaffold42112 SAMTools SNP 92848 92848 28.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold42112 SAMTools SNP 92893 92893 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold42112 SAMTools SNP 92998 92998 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C79:82 scaffold42112 SAMTools SNP 93273 93273 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold42112 SAMTools SNP 93369 93369 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42112 SAMTools SNP 93396 93396 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.53%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42112 SAMTools SNP 93921 93921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C13%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold42112 SAMTools SNP 93951 93951 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C151:99 scaffold42112 SAMTools SNP 96422 96422 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42112 SAMTools SNP 97250 97250 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42112 SAMTools SNP 99333 99333 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.028%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42112 SAMTools SNP 99578 99578 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C10%2C8%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.18%2C3.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42112 SAMTools SNP 99593 99593 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.0021%2C0.023%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42112 SAMTools SNP 99776 99776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 100311 100311 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42112 SAMTools SNP 101098 101098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C49%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42112 SAMTools SNP 101759 101759 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 101795 101795 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42112 SAMTools SNP 104958 104958 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42112 SAMTools SNP 105039 105039 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 109427 109427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C59%2C37%2C105%3BMQ%3D50%3BFQ%3D194%3BPV4%3D7.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold42112 SAMTools SNP 109748 109748 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42112 SAMTools SNP 109757 109757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42112 SAMTools SNP 109772 109772 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C0%2C12%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.32%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42112 SAMTools SNP 109781 109781 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42112 SAMTools SNP 109823 109823 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C12%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D4.3e-06%2C0.036%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42112 SAMTools SNP 110118 110118 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D9.5e-05%2C2.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42112 SAMTools SNP 110317 110317 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 110387 110387 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 111460 111460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C0.26%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold42112 SAMTools SNP 111475 111475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold42112 SAMTools SNP 111544 111544 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.00032%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C223:99 scaffold42112 SAMTools SNP 114226 114226 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 114829 114829 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42112 SAMTools SNP 114856 114856 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42112 SAMTools SNP 115297 115297 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 115327 115327 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 125676 125676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D223%2C0%2C164%2C0%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42112 SAMTools SNP 125781 125781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C364%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C2.2e-15%2C0.41%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42112 SAMTools SNP 125907 125907 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D37%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C0.19%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C11:14 scaffold42112 SAMTools SNP 125930 125930 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D25%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C60%2C0:99 scaffold42112 SAMTools SNP 129629 129629 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C38%2C3%3BMQ%3D30%3BFQ%3D-98%3BPV4%3D7.8e-06%2C2.9e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C71%2C0:99 scaffold42112 SAMTools SNP 129632 129632 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C6%2C36%2C3%3BMQ%3D30%3BFQ%3D-69%3BPV4%3D5.9e-05%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C42%2C0:81 scaffold42112 SAMTools SNP 132000 132000 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.5e-38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C245:71 scaffold42112 SAMTools SNP 134219 134219 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42112 SAMTools SNP 134276 134276 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 13591 13591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 13612 13612 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42124 SAMTools SNP 13749 13749 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42124 SAMTools SNP 22762 22762 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42124 SAMTools SNP 36283 36283 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold42124 SAMTools SNP 36295 36295 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.4%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C129:99 scaffold42124 SAMTools SNP 39891 39891 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42124 SAMTools SNP 39908 39908 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.066%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C151:46 scaffold42124 SAMTools SNP 39921 39921 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold42124 SAMTools SNP 40428 40428 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42124 SAMTools SNP 40446 40446 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4.6e-05%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C235:46 scaffold42124 SAMTools SNP 44350 44350 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42124 SAMTools SNP 45097 45097 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42124 SAMTools SNP 50400 50400 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.28%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold42124 SAMTools SNP 51364 51364 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42124 SAMTools SNP 52103 52103 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 60954 60954 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42124 SAMTools SNP 63359 63359 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C27%2C0:51 scaffold42124 SAMTools SNP 63725 63725 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C154%2C0:99 scaffold42124 SAMTools SNP 63831 63831 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C96%2C0:99 scaffold42124 SAMTools SNP 63911 63911 32.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold42124 SAMTools SNP 64308 64308 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C99%2C0:99 scaffold42124 SAMTools SNP 64670 64670 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold42124 SAMTools SNP 64743 64743 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold42124 SAMTools SNP 64786 64786 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold42124 SAMTools SNP 65047 65047 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C15%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C9.4e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold42124 SAMTools SNP 65243 65243 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C72%2C0:99 scaffold42124 SAMTools SNP 65771 65771 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold42124 SAMTools SNP 67772 67772 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C246:99 scaffold42124 SAMTools SNP 68091 68091 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold42124 SAMTools SNP 68291 68291 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42124 SAMTools SNP 68514 68514 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C15%2C0:27 scaffold42124 SAMTools SNP 68549 68549 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42124 SAMTools SNP 69051 69051 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42124 SAMTools SNP 69052 69052 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42124 SAMTools SNP 83858 83858 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1409%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C838%2C23%2C515%3BMQ%3D39%3BFQ%3D27%3BPV4%3D0.67%2C0.017%2C0%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42124 SAMTools SNP 85136 85136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C3%2C70%2C283%3BMQ%3D36%3BFQ%3D-282%3BPV4%3D6.9e-06%2C0.0017%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42124 SAMTools SNP 86071 86071 9.51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D2%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C114%2C0:60 scaffold42124 SAMTools SNP 99208 99208 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D32%3BFQ%3D43.6%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C81:74 scaffold42124 SAMTools SNP 99240 99240 28.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D20%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold42124 SAMTools SNP 100250 100250 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D40%2C31%2C10%2C32%3BMQ%3D20%3BFQ%3D4.77%3BPV4%3D0.00087%2C1%2C0.0025%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C218:28 scaffold42124 SAMTools SNP 100772 100772 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D33%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C69%2C0:99 scaffold42124 SAMTools SNP 103926 103926 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C4%2C156%2C128%3BMQ%3D1%3BFQ%3D-282%3BPV4%3D1%2C6.1e-128%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C255%2C0:36 scaffold42124 SAMTools SNP 105590 105590 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C371%2C165%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42124 SAMTools SNP 106142 106142 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C4%2C126%2C131%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.68%2C0.34%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42124 SAMTools SNP 115351 115351 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 116767 116767 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42124 SAMTools SNP 117416 117416 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42124 SAMTools SNP 117422 117422 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42124 SAMTools SNP 123948 123948 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C233:66 scaffold42124 SAMTools SNP 128970 128970 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 131072 131072 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.3%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42124 SAMTools SNP 132416 132416 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C50%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold42124 SAMTools SNP 132428 132428 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C50%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold42124 SAMTools SNP 132782 132782 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold42124 SAMTools SNP 132803 132803 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C13%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42124 SAMTools SNP 133172 133172 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C16%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.3%2C1e-17%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42124 SAMTools SNP 133181 133181 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.032%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42124 SAMTools SNP 135584 135584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42124 SAMTools SNP 135608 135608 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C32%2C31%3BMQ%3D50%3BFQ%3D-47%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold42124 SAMTools SNP 136582 136582 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 136583 136583 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42124 SAMTools SNP 136858 136858 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C36%2C0:69 scaffold42124 SAMTools SNP 138296 138296 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C175:56 scaffold42124 SAMTools SNP 141144 141144 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C13%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00012%2C1%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold42124 SAMTools SNP 141204 141204 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.2e-32%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42124 SAMTools SNP 142079 142079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 9582 9582 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42128 SAMTools SNP 9621 9621 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold42128 SAMTools SNP 10719 10719 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold42128 SAMTools SNP 35463 35463 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42128 SAMTools SNP 35465 35465 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42128 SAMTools SNP 35694 35694 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42128 SAMTools SNP 38310 38310 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42128 SAMTools SNP 38340 38340 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42128 SAMTools SNP 38554 38554 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 41270 41270 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 42731 42731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 42746 42746 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C32%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-05%2C0.49%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 42755 42755 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C17%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 42933 42933 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C3%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold42128 SAMTools SNP 42966 42966 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 44293 44293 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.35%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 44326 44326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00055%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 44392 44392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00081%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 44576 44576 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.27%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold42128 SAMTools SNP 46177 46177 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C7%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C2.2e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 46484 46484 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C72%2C0:99 scaffold42128 SAMTools SNP 46529 46529 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold42128 SAMTools SNP 48613 48613 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C31%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42128 SAMTools SNP 48751 48751 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 49188 49188 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 49659 49659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C35%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42128 SAMTools SNP 51476 51476 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C73:76 scaffold42128 SAMTools SNP 51813 51813 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D66%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D3.8e-07%2C1%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42128 SAMTools SNP 51854 51854 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 52084 52084 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C31%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-07%2C1%2C1%2C6.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 52147 52147 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.0019%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42128 SAMTools SNP 52231 52231 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C55%2C2%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.15%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42128 SAMTools SNP 52626 52626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C38%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42128 SAMTools SNP 52917 52917 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D178%3BPV4%3D3.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold42128 SAMTools SNP 55695 55695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42128 SAMTools SNP 55701 55701 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42128 SAMTools SNP 56020 56020 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C13%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.31%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold42128 SAMTools SNP 56645 56645 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42128 SAMTools SNP 56666 56666 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42128 SAMTools SNP 56723 56723 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold42128 SAMTools SNP 57913 57913 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0077%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42128 SAMTools SNP 58317 58317 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C147:69 scaffold42128 SAMTools SNP 59275 59275 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C30%2C0:57 scaffold42128 SAMTools SNP 75091 75091 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C18%2C0:33 scaffold42128 SAMTools SNP 75962 75962 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C27%2C0:51 scaffold42128 SAMTools SNP 76034 76034 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.67%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold42128 SAMTools SNP 76058 76058 37.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold42128 SAMTools SNP 76068 76068 33.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold42128 SAMTools SNP 76319 76319 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.27%2C0.15%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42128 SAMTools SNP 76388 76388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C21%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 76521 76521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 77968 77968 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C184:99 scaffold42128 SAMTools SNP 78121 78121 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C42%2C0:81 scaffold42128 SAMTools SNP 78288 78288 67.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold42128 SAMTools SNP 79288 79288 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42128 SAMTools SNP 79352 79352 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42128 SAMTools SNP 79450 79450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C20%2C51%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 80439 80439 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42128 SAMTools SNP 80496 80496 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42128 SAMTools SNP 80503 80503 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C52%2C13%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D4.4e-05%2C1%2C1%2C8.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42128 SAMTools SNP 80766 80766 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C9%2C69%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 80929 80929 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C29%2C32%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 81202 81202 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42128 SAMTools SNP 81313 81313 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42128 SAMTools SNP 81319 81319 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold42128 SAMTools SNP 81328 81328 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.11%2C0.14%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold42128 SAMTools SNP 81349 81349 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-05%2C0.4%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 82626 82626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 82731 82731 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42128 SAMTools SNP 82867 82867 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42128 SAMTools SNP 82885 82885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 82894 82894 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 83834 83834 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42128 SAMTools SNP 83875 83875 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 90063 90063 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C223:80 scaffold42128 SAMTools SNP 90114 90114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42128 SAMTools SNP 104795 104795 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42128 SAMTools SNP 106692 106692 100 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C80%2C71%2C133%2C0%2C127:16 scaffold42128 SAMTools SNP 107907 107907 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.7e-19%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C113:30 scaffold42128 SAMTools SNP 108564 108564 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold42128 SAMTools SNP 108901 108901 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold42128 SAMTools SNP 112237 112237 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42128 SAMTools SNP 116509 116509 8.22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold42128 SAMTools SNP 116655 116655 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C105%2C0:99 scaffold42128 SAMTools SNP 117240 117240 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42128 SAMTools SNP 117243 117243 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.00083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42128 SAMTools SNP 117944 117944 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42128 SAMTools SNP 117945 117945 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42128 SAMTools SNP 118133 118133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42128 SAMTools SNP 118511 118511 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42128 SAMTools SNP 128492 128492 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C88:69 scaffold42128 SAMTools SNP 130130 130130 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42128 SAMTools SNP 130143 130143 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42128 SAMTools SNP 130386 130386 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold42128 SAMTools SNP 130434 130434 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42128 SAMTools SNP 130688 130688 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42128 SAMTools SNP 133647 133647 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.062%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C29:32 scaffold42128 SAMTools SNP 134090 134090 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42128 SAMTools SNP 134146 134146 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold42128 SAMTools SNP 134381 134381 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42128 SAMTools SNP 134516 134516 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C63%2C0:99 scaffold42128 SAMTools SNP 134544 134544 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C33%2C0:63 scaffold42128 SAMTools SNP 134552 134552 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42128 SAMTools SNP 134608 134608 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold42128 SAMTools SNP 138880 138880 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42128 SAMTools SNP 139475 139475 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42128 SAMTools SNP 139493 139493 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42128 SAMTools SNP 139538 139538 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42128 SAMTools SNP 139738 139738 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42128 SAMTools SNP 139775 139775 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.05%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold42128 SAMTools SNP 140648 140648 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42128 SAMTools SNP 143603 143603 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C72%2C0:99 scaffold42128 SAMTools SNP 143662 143662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.38%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold42128 SAMTools SNP 144333 144333 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42128 SAMTools SNP 144367 144367 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold42128 SAMTools SNP 144373 144373 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold42128 SAMTools SNP 145492 145492 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42128 SAMTools SNP 145541 145541 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C76%2C23%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.011%2C2.8e-136%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42128 SAMTools SNP 145629 145629 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold42128 SAMTools SNP 145894 145894 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold42130 SAMTools SNP 202 202 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42130 SAMTools SNP 926 926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C60%2C46%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 1138 1138 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 4671 4671 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.18%2C3.8e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C67:46 scaffold42130 SAMTools SNP 7603 7603 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42130 SAMTools SNP 7708 7708 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold42130 SAMTools SNP 8844 8844 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C84:43 scaffold42130 SAMTools SNP 13505 13505 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.045%2C2.4e-05%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42130 SAMTools SNP 13507 13507 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.038%2C0.00058%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42130 SAMTools SNP 30214 30214 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42130 SAMTools SNP 30218 30218 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42130 SAMTools SNP 30326 30326 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold42130 SAMTools SNP 36479 36479 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C212:99 scaffold42130 SAMTools SNP 40076 40076 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42130 SAMTools SNP 47107 47107 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C187:99 scaffold42130 SAMTools SNP 56747 56747 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.4%2C5.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold42130 SAMTools SNP 57053 57053 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C90%2C0:99 scaffold42130 SAMTools SNP 57102 57102 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C51%2C0:99 scaffold42130 SAMTools SNP 67617 67617 65.1 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C3%2C89%2C0%2C86:33 scaffold42130 SAMTools SNP 69171 69171 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C4%2C23%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.056%2C9.7e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42130 SAMTools SNP 69306 69306 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C3%2C20%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.012%2C1.1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42130 SAMTools SNP 69386 69386 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C66%2C0:99 scaffold42130 SAMTools SNP 71155 71155 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.28%2C0.0027%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42130 SAMTools SNP 71578 71578 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42130 SAMTools SNP 71618 71618 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold42130 SAMTools SNP 90097 90097 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.032%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold42130 SAMTools SNP 90420 90420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42130 SAMTools SNP 90450 90450 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold42130 SAMTools SNP 91015 91015 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C185:42 scaffold42130 SAMTools SNP 94840 94840 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42130 SAMTools SNP 97207 97207 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42130 SAMTools SNP 97706 97706 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C72%2C9%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 97945 97945 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 97987 97987 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 98435 98435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 98733 98733 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C17%2C80%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.042%2C1e-118%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42130 SAMTools SNP 99530 99530 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42130 SAMTools SNP 99567 99567 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42130 SAMTools SNP 99592 99592 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold42130 SAMTools SNP 102578 102578 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 102988 102988 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C32%2C24%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D6.9e-05%2C1%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42130 SAMTools SNP 103017 103017 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D562%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D340%2C11%2C196%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C4.6e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 103043 103043 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D419%2C12%2C286%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.034%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 103391 103391 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C12%2C95%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 104726 104726 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C63%2C0:83 scaffold42130 SAMTools SNP 104736 104736 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C87%2C0:99 scaffold42130 SAMTools SNP 104850 104850 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C193:99 scaffold42130 SAMTools SNP 104864 104864 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C1%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-05%2C1%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 105708 105708 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C102%2C2%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C0.0038%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42130 SAMTools SNP 105735 105735 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C2%2C89%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.002%2C1%2C1%2C5.4e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold42130 SAMTools SNP 106135 106135 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C8%2C104%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.3%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 106649 106649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 107077 107077 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C182%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42130 SAMTools SNP 107340 107340 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C55%2C243%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C5.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 107679 107679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C107%2C16%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42130 SAMTools SNP 108319 108319 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C8%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.14%2C5.5e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold42130 SAMTools SNP 108349 108349 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C18%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0041%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold42130 SAMTools SNP 109072 109072 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C15%2C86%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C7.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 109947 109947 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.18%2C0.39%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold42130 SAMTools SNP 110488 110488 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42130 SAMTools SNP 110504 110504 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C0.24%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42130 SAMTools SNP 110909 110909 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42130 SAMTools SNP 110915 110915 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42130 SAMTools SNP 111603 111603 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C0.29%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold42130 SAMTools SNP 111645 111645 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold42130 SAMTools SNP 113243 113243 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42130 SAMTools SNP 113246 113246 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42130 SAMTools SNP 119095 119095 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42130 SAMTools SNP 119104 119104 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42130 SAMTools SNP 123489 123489 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.4%2C0.3%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C209:99 scaffold42130 SAMTools SNP 126744 126744 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C15%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.39%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42130 SAMTools SNP 128282 128282 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold42130 SAMTools SNP 130220 130220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42130 SAMTools SNP 130711 130711 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C228:37 scaffold42130 SAMTools SNP 130738 130738 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42130 SAMTools SNP 132784 132784 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 653 653 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.56%2C0.0035%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42144 SAMTools SNP 1540 1540 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D44%3BFQ%3D81%3BPV4%3D0.12%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42144 SAMTools SNP 1561 1561 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold42144 SAMTools SNP 8856 8856 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42144 SAMTools SNP 50823 50823 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold42144 SAMTools SNP 86613 86613 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 86968 86968 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 87512 87512 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C149:99 scaffold42144 SAMTools SNP 87623 87623 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42144 SAMTools SNP 87647 87647 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42144 SAMTools SNP 103671 103671 17.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold42144 SAMTools SNP 103847 103847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42144 SAMTools SNP 113662 113662 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold42144 SAMTools SNP 114571 114571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D48%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42144 SAMTools SNP 115012 115012 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42144 SAMTools SNP 115671 115671 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42144 SAMTools SNP 115701 115701 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 115810 115810 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42144 SAMTools SNP 115811 115811 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.093%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C196:64 scaffold42144 SAMTools SNP 116262 116262 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold42144 SAMTools SNP 116776 116776 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D113%3BPV4%3D2e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C140:99 scaffold42144 SAMTools SNP 116781 116781 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42144 SAMTools SNP 117403 117403 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C3%2C16%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1.3e-05%2C0.094%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C238:76 scaffold42144 SAMTools SNP 118773 118773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C2%2C28%2C2%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold42144 SAMTools SNP 126282 126282 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C39%2C0:75 scaffold42144 SAMTools SNP 126355 126355 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold42144 SAMTools SNP 132429 132429 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold42144 SAMTools SNP 132785 132785 88 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold42144 SAMTools SNP 133488 133488 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42144 SAMTools SNP 134743 134743 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42144 SAMTools SNP 134809 134809 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 134830 134830 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 135338 135338 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 135767 135767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42144 SAMTools SNP 136151 136151 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42144 SAMTools SNP 136850 136850 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold42144 SAMTools SNP 137397 137397 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42144 SAMTools SNP 137412 137412 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42144 SAMTools SNP 138512 138512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42144 SAMTools SNP 138562 138562 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42144 SAMTools SNP 138565 138565 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42144 SAMTools SNP 139659 139659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 139669 139669 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 139710 139710 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42144 SAMTools SNP 139770 139770 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42144 SAMTools SNP 140113 140113 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42144 SAMTools SNP 140143 140143 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold42144 SAMTools SNP 140155 140155 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42144 SAMTools SNP 140963 140963 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42144 SAMTools SNP 140972 140972 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42144 SAMTools SNP 140973 140973 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42144 SAMTools SNP 140987 140987 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42144 SAMTools SNP 141676 141676 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 141699 141699 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42144 SAMTools SNP 142069 142069 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold42144 SAMTools SNP 142288 142288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold42144 SAMTools SNP 142999 142999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42144 SAMTools SNP 146195 146195 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C3%2C25%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.25%2C9.4e-45%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C239:50 scaffold42144 SAMTools SNP 146225 146225 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C138%2C0:99 scaffold42158 SAMTools SNP 1376 1376 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold42158 SAMTools SNP 13257 13257 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42158 SAMTools SNP 13718 13718 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42158 SAMTools SNP 20925 20925 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42158 SAMTools SNP 20955 20955 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42158 SAMTools SNP 26684 26684 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42158 SAMTools SNP 30087 30087 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C19%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.11%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold42158 SAMTools SNP 34757 34757 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C233:99 scaffold42158 SAMTools SNP 36099 36099 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold42158 SAMTools SNP 36190 36190 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42158 SAMTools SNP 37704 37704 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D9.3e-08%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold42158 SAMTools SNP 37736 37736 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C44:47 scaffold42158 SAMTools SNP 37867 37867 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42158 SAMTools SNP 37878 37878 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C14%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0042%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold42158 SAMTools SNP 37899 37899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C4%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42158 SAMTools SNP 39084 39084 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C251:99 scaffold42158 SAMTools SNP 39137 39137 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42158 SAMTools SNP 39254 39254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42158 SAMTools SNP 39759 39759 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42158 SAMTools SNP 39813 39813 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42158 SAMTools SNP 40117 40117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C7%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42158 SAMTools SNP 40143 40143 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42158 SAMTools SNP 42050 42050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C16%2C138%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-07%2C0.019%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42158 SAMTools SNP 43499 43499 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42158 SAMTools SNP 44767 44767 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C65%2C0%2C22%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.037%2C1%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42158 SAMTools SNP 44803 44803 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.021%2C0.00013%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42158 SAMTools SNP 44825 44825 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0057%2C1.3e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42158 SAMTools SNP 44950 44950 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.062%2C2e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42158 SAMTools SNP 44996 44996 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C5%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42158 SAMTools SNP 45009 45009 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.7%2C0.00042%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold42158 SAMTools SNP 45310 45310 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C9%2C22%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.69%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42158 SAMTools SNP 45626 45626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42158 SAMTools SNP 46327 46327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42158 SAMTools SNP 47069 47069 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.28%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold42158 SAMTools SNP 47335 47335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42158 SAMTools SNP 47357 47357 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42158 SAMTools SNP 51816 51816 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42158 SAMTools SNP 52456 52456 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42158 SAMTools SNP 52465 52465 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D48%3BFQ%3D87%3BPV4%3D0.58%2C1%2C0.1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C243:99 scaffold42158 SAMTools SNP 52478 52478 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C4%3BMQ%3D46%3BFQ%3D5.47%3BPV4%3D0.55%2C0.0018%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42158 SAMTools SNP 52486 52486 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C9%3BMQ%3D47%3BFQ%3D209%3BPV4%3D0.69%2C1%2C0.081%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold42158 SAMTools SNP 53601 53601 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C33%2C0:63 scaffold42158 SAMTools SNP 53613 53613 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D40%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C75:78 scaffold42158 SAMTools SNP 53622 53622 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D34%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C0.074%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C150:36 scaffold42158 SAMTools SNP 55435 55435 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C1%3BMQ%3D48%3BFQ%3D125%3BPV4%3D0.015%2C0.22%2C0.19%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C152:99 scaffold42158 SAMTools SNP 58645 58645 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C4%3BMQ%3D49%3BFQ%3D10.4%3BPV4%3D7.9e-05%2C1e-10%2C0.0092%2C7.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C236:39 scaffold42158 SAMTools SNP 58658 58658 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold42158 SAMTools SNP 64778 64778 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C13%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.4%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C246:99 scaffold42158 SAMTools SNP 67680 67680 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42158 SAMTools SNP 74492 74492 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C20%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.031%2C1%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42158 SAMTools SNP 74498 74498 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold42158 SAMTools SNP 76626 76626 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42158 SAMTools SNP 77398 77398 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42158 SAMTools SNP 82206 82206 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold42158 SAMTools SNP 83330 83330 3.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold42158 SAMTools SNP 126480 126480 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42158 SAMTools SNP 133243 133243 17.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold42158 SAMTools SNP 133961 133961 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42158 SAMTools SNP 134107 134107 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold42158 SAMTools SNP 138962 138962 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C1%2C18%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.3%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C248:99 scaffold42158 SAMTools SNP 138982 138982 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.47%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold42158 SAMTools SNP 138983 138983 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42164 SAMTools SNP 233 233 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42164 SAMTools SNP 819 819 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C277%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 1317 1317 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C65%2C197%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 1351 1351 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42164 SAMTools SNP 6375 6375 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42164 SAMTools SNP 6760 6760 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42164 SAMTools SNP 6769 6769 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42164 SAMTools SNP 6838 6838 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C255%2C0:99 scaffold42164 SAMTools SNP 6992 6992 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 7114 7114 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C114%2C20%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 7574 7574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C50%2C19%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 7650 7650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 8320 8320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold42164 SAMTools SNP 8324 8324 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42164 SAMTools SNP 8335 8335 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C62%2C3%2C21%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.046%2C1%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold42164 SAMTools SNP 8712 8712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C91%2C45%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 8730 8730 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D456%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D247%2C55%2C42%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 8774 8774 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C15%2C183%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D4.9e-07%2C4.3e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42164 SAMTools SNP 8781 8781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C8%2C86%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-22%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 9178 9178 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 9220 9220 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 9256 9256 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold42164 SAMTools SNP 9295 9295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 9567 9567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C1%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold42164 SAMTools SNP 9989 9989 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C18%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C185:99 scaffold42164 SAMTools SNP 10091 10091 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D25.7%3BPV4%3D0.0015%2C3.6e-05%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C53:56 scaffold42164 SAMTools SNP 10106 10106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42164 SAMTools SNP 10401 10401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C2%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold42164 SAMTools SNP 10461 10461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 10590 10590 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C15%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold42164 SAMTools SNP 10611 10611 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 10751 10751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 10805 10805 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 10844 10844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 11284 11284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D446%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C124%2C97%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-17%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 11299 11299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C56%2C139%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 11437 11437 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C27%2C204%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 11488 11488 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C145%2C68%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 11922 11922 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C154%2C6%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 11982 11982 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C92%2C0%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 14187 14187 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C238:99 scaffold42164 SAMTools SNP 14869 14869 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 14872 14872 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 15287 15287 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 15665 15665 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42164 SAMTools SNP 18103 18103 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold42164 SAMTools SNP 19790 19790 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold42164 SAMTools SNP 24299 24299 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42164 SAMTools SNP 24437 24437 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42164 SAMTools SNP 24722 24722 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42164 SAMTools SNP 37452 37452 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42164 SAMTools SNP 37627 37627 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 38821 38821 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D201%2C228%2C71%2C164%3BMQ%3D48%3BFQ%3D225%3BPV4%3D3.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 40152 40152 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D738%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C657%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 40170 40170 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 40177 40177 18 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42164 SAMTools SNP 42714 42714 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 42724 42724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C67%2C84%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D4.3e-30%2C0.11%2C1%2C2.5e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 42725 42725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C66%2C83%2C0%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.9e-31%2C3e-06%2C1%2C6.9e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 42953 42953 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.012%2C0.013%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C166:62 scaffold42164 SAMTools SNP 42954 42954 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C11:14 scaffold42164 SAMTools SNP 47262 47262 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42164 SAMTools SNP 47424 47424 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C216:99 scaffold42164 SAMTools SNP 47439 47439 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42164 SAMTools SNP 47514 47514 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42164 SAMTools SNP 52722 52722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42164 SAMTools SNP 52791 52791 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold42164 SAMTools SNP 52928 52928 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold42164 SAMTools SNP 53576 53576 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42164 SAMTools SNP 53645 53645 64.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C6%2C0:10 scaffold42164 SAMTools SNP 54565 54565 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 55879 55879 14.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold42164 SAMTools SNP 59765 59765 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold42164 SAMTools SNP 61423 61423 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 62022 62022 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold42164 SAMTools SNP 62448 62448 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.54%2C3.7e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C211:80 scaffold42164 SAMTools SNP 63251 63251 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42164 SAMTools SNP 67371 67371 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C45%2C0:87 scaffold42164 SAMTools SNP 67419 67419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C2%2C141%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 67758 67758 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C85%2C8%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 68446 68446 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 68506 68506 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 69084 69084 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42164 SAMTools SNP 69865 69865 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C17%2C6%2C16%3BMQ%3D50%3BFQ%3D155%3BPV4%3D3.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42164 SAMTools SNP 93971 93971 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42164 SAMTools SNP 95188 95188 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42164 SAMTools SNP 95209 95209 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42164 SAMTools SNP 98384 98384 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42164 SAMTools SNP 101502 101502 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.0069%2C3.1e-06%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42164 SAMTools SNP 102582 102582 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C43%2C35%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-11%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 102736 102736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C6%2C65%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 102766 102766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C6%2C55%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 103402 103402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42164 SAMTools SNP 103414 103414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42164 SAMTools SNP 104329 104329 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42164 SAMTools SNP 104330 104330 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42164 SAMTools SNP 104531 104531 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C0%2C51%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 104546 104546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C2%2C51%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 105033 105033 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42164 SAMTools SNP 105051 105051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42164 SAMTools SNP 105511 105511 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42164 SAMTools SNP 105544 105544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00015%2C1.3e-27%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold42164 SAMTools SNP 105664 105664 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C96%2C0%2C15%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42164 SAMTools SNP 105673 105673 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C94%2C0%2C15%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42164 SAMTools SNP 105818 105818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42164 SAMTools SNP 105839 105839 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42164 SAMTools SNP 106117 106117 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-145;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C36:99 scaffold42164 SAMTools SNP 106189 106189 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C27%2C0:51 scaffold42164 SAMTools SNP 106582 106582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C35%2C109%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C4.3e-27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 106830 106830 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 106860 106860 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C56%2C3%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-06%2C1%2C1%2C2.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 106893 106893 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C16%2C24%2C8%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42164 SAMTools SNP 107134 107134 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C32%2C36%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 107212 107212 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C128%2C5%2C35%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.31%2C4.3e-31%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42164 SAMTools SNP 107587 107587 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C33%2C19%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D7.9e-05%2C1%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42164 SAMTools SNP 107773 107773 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C13%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.47%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 107794 107794 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C25%2C30%2C2%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.069%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold42164 SAMTools SNP 107806 107806 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C1%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42164 SAMTools SNP 107818 107818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 107821 107821 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C4%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 108457 108457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 108529 108529 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C4%2C6%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42164 SAMTools SNP 108565 108565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C14%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 108811 108811 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C39%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42164 SAMTools SNP 108826 108826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42164 SAMTools SNP 108844 108844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42164 SAMTools SNP 109254 109254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42164 SAMTools SNP 109269 109269 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42164 SAMTools SNP 109314 109314 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.23%2C1%2C1%2C2.1e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42164 SAMTools SNP 109368 109368 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C33%2C86%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 109531 109531 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C42%2C32%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 109786 109786 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C89%2C70%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 110085 110085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 110138 110138 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C63%2C7%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 110169 110169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42164 SAMTools SNP 110684 110684 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C11%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0098%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 110693 110693 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C0%2C17%3BMQ%3D49%3BFQ%3D106%3BPV4%3D0.0015%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42164 SAMTools SNP 110710 110710 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C38%2C10%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C0.41%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42164 SAMTools SNP 110966 110966 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C6%3BMQ%3D43%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42164 SAMTools SNP 111087 111087 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D43%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42164 SAMTools SNP 120838 120838 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 134578 134578 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42164 SAMTools SNP 134645 134645 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 135296 135296 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 135535 135535 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42164 SAMTools SNP 136620 136620 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42164 SAMTools SNP 136632 136632 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42164 SAMTools SNP 143112 143112 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C21%2C0:39 scaffold42164 SAMTools SNP 143178 143178 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.1%2C7.9e-13%2C0.07%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42166 SAMTools SNP 6133 6133 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 6212 6212 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 78637 78637 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C199:51 scaffold42166 SAMTools SNP 78645 78645 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C204:71 scaffold42166 SAMTools SNP 79901 79901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C98%2C51%3BMQ%3D50%3BFQ%3D-218%3BPV4%3D0.00029%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C191%2C0:99 scaffold42166 SAMTools SNP 79916 79916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C9%2C93%2C50%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D0.00087%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42166 SAMTools SNP 79985 79985 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42166 SAMTools SNP 80176 80176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C72%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42166 SAMTools SNP 80188 80188 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold42166 SAMTools SNP 80245 80245 182 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C32%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C2%2C0:5 scaffold42166 SAMTools SNP 80649 80649 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C197:66 scaffold42166 SAMTools SNP 80682 80682 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42166 SAMTools SNP 85392 85392 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C60%2C0:99 scaffold42166 SAMTools SNP 85399 85399 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C35%2C0%2C11%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.18%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42166 SAMTools SNP 86253 86253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C45%2C3%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-08%2C8.2e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 86286 86286 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C114%2C23%2C45%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1.1e-09%2C3e-128%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42166 SAMTools SNP 86762 86762 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C5%2C133%2C13%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.32%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 88052 88052 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C163%2C23%2C62%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.079%2C1%2C0.023%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 88103 88103 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C146%2C147%2C62%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 88195 88195 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42166 SAMTools SNP 88306 88306 6.17 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold42166 SAMTools SNP 91244 91244 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42166 SAMTools SNP 94414 94414 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold42166 SAMTools SNP 97725 97725 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C150%2C1%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 97743 97743 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C133%2C0%2C73%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42166 SAMTools SNP 97872 97872 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C36%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 98414 98414 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C7%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42166 SAMTools SNP 103750 103750 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42166 SAMTools SNP 103755 103755 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 113794 113794 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42166 SAMTools SNP 114041 114041 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42166 SAMTools SNP 114411 114411 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 116244 116244 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.45%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C201:67 scaffold42166 SAMTools SNP 116247 116247 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.4%2C6.6e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C124:75 scaffold42166 SAMTools SNP 116955 116955 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42166 SAMTools SNP 117015 117015 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 118507 118507 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 119176 119176 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold42166 SAMTools SNP 119185 119185 50.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C9%2C78%2C0%2C75:21 scaffold42166 SAMTools SNP 119200 119200 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 119466 119466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42166 SAMTools SNP 119476 119476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42166 SAMTools SNP 120238 120238 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42166 SAMTools SNP 120283 120283 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42166 SAMTools SNP 120307 120307 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.53%2C0.48%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42166 SAMTools SNP 122022 122022 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C33%2C0:63 scaffold42166 SAMTools SNP 122036 122036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.047%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold42166 SAMTools SNP 122072 122072 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold42166 SAMTools SNP 122099 122099 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42166 SAMTools SNP 122117 122117 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42166 SAMTools SNP 122724 122724 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42166 SAMTools SNP 122745 122745 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42166 SAMTools SNP 123260 123260 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42166 SAMTools SNP 123329 123329 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 135979 135979 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold42166 SAMTools SNP 139054 139054 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42166 SAMTools SNP 139057 139057 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42172 SAMTools SNP 53087 53087 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold42172 SAMTools SNP 53189 53189 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42172 SAMTools SNP 63223 63223 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C207:42 scaffold42172 SAMTools SNP 64334 64334 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold42172 SAMTools SNP 64784 64784 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C39%2C0:75 scaffold42172 SAMTools SNP 64790 64790 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C126%2C0:99 scaffold42172 SAMTools SNP 64877 64877 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold42172 SAMTools SNP 65110 65110 25 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C20%2C11%2C54%2C0%2C51:15 scaffold42172 SAMTools SNP 68634 68634 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42172 SAMTools SNP 68644 68644 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold42172 SAMTools SNP 68651 68651 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold42172 SAMTools SNP 68766 68766 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0:63 scaffold42172 SAMTools SNP 70681 70681 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42172 SAMTools SNP 71178 71178 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42172 SAMTools SNP 117719 117719 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42172 SAMTools SNP 119163 119163 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42172 SAMTools SNP 119286 119286 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42172 SAMTools SNP 131834 131834 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 1574 1574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 1671 1671 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 1759 1759 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42184 SAMTools SNP 1865 1865 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C42%2C0:81 scaffold42184 SAMTools SNP 2656 2656 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42184 SAMTools SNP 3029 3029 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C32%2C9%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.011%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42184 SAMTools SNP 3504 3504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C93%2C13%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42184 SAMTools SNP 3922 3922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42184 SAMTools SNP 3971 3971 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C42%2C84%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42184 SAMTools SNP 4390 4390 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42184 SAMTools SNP 5787 5787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C11%2C103%2C19%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D1.4e-08%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42184 SAMTools SNP 6228 6228 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42184 SAMTools SNP 7256 7256 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C206%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C255%2C0:99 scaffold42184 SAMTools SNP 7567 7567 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.24%2C4.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold42184 SAMTools SNP 8979 8979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42184 SAMTools SNP 11587 11587 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42184 SAMTools SNP 11596 11596 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42184 SAMTools SNP 11598 11598 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42184 SAMTools SNP 11671 11671 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold42184 SAMTools SNP 24279 24279 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42184 SAMTools SNP 28137 28137 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42184 SAMTools SNP 29470 29470 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42184 SAMTools SNP 29480 29480 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42184 SAMTools SNP 29678 29678 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 31605 31605 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42184 SAMTools SNP 31984 31984 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C11%2C36%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42184 SAMTools SNP 32170 32170 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C27%2C48%3BMQ%3D50%3BFQ%3D101%3BPV4%3D2e-05%2C4.8e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold42184 SAMTools SNP 35447 35447 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 35710 35710 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.34%2C1.9e-07%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42184 SAMTools SNP 36755 36755 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42184 SAMTools SNP 36964 36964 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42184 SAMTools SNP 39017 39017 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold42184 SAMTools SNP 39781 39781 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C27%2C0:51 scaffold42184 SAMTools SNP 40262 40262 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42184 SAMTools SNP 40825 40825 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42184 SAMTools SNP 41249 41249 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C23%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.34%2C9.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C237:94 scaffold42184 SAMTools SNP 42119 42119 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42184 SAMTools SNP 42669 42669 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42184 SAMTools SNP 43605 43605 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold42184 SAMTools SNP 43627 43627 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42184 SAMTools SNP 46750 46750 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C160:41 scaffold42184 SAMTools SNP 46789 46789 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42184 SAMTools SNP 47128 47128 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C110:48 scaffold42184 SAMTools SNP 47477 47477 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C48%2C0:93 scaffold42184 SAMTools SNP 47543 47543 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C7.4e-29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42184 SAMTools SNP 47693 47693 33.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold42184 SAMTools SNP 47837 47837 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42184 SAMTools SNP 48011 48011 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C3.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold42184 SAMTools SNP 48185 48185 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold42184 SAMTools SNP 48283 48283 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C54:57 scaffold42184 SAMTools SNP 48284 48284 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C103:57 scaffold42184 SAMTools SNP 48478 48478 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C45%2C0:87 scaffold42184 SAMTools SNP 48713 48713 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C121:53 scaffold42184 SAMTools SNP 49061 49061 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42184 SAMTools SNP 64164 64164 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42184 SAMTools SNP 69104 69104 207 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C233:99 scaffold42184 SAMTools SNP 71179 71179 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D51%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.1e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C209:31 scaffold42184 SAMTools SNP 71207 71207 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C223:99 scaffold42184 SAMTools SNP 71258 71258 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C6%2C30%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.23%2C4.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold42184 SAMTools SNP 71268 71268 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C1%2C23%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.64%2C2.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42184 SAMTools SNP 71282 71282 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C5%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.3e-15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42184 SAMTools SNP 72690 72690 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C10%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42184 SAMTools SNP 74319 74319 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42184 SAMTools SNP 74358 74358 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold42184 SAMTools SNP 74463 74463 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C3:81 scaffold42184 SAMTools SNP 75328 75328 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C0.47%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42184 SAMTools SNP 75491 75491 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42184 SAMTools SNP 75965 75965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42184 SAMTools SNP 76058 76058 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C72%2C0:99 scaffold42184 SAMTools SNP 76151 76151 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold42184 SAMTools SNP 76181 76181 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.061%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42184 SAMTools SNP 77279 77279 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42184 SAMTools SNP 77297 77297 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42184 SAMTools SNP 80469 80469 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42184 SAMTools SNP 80476 80476 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold42184 SAMTools SNP 81309 81309 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42184 SAMTools SNP 81313 81313 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42184 SAMTools SNP 81374 81374 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42190 SAMTools SNP 6381 6381 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 6412 6412 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 18310 18310 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 41017 41017 19.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold42190 SAMTools SNP 44604 44604 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 45575 45575 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 45651 45651 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42190 SAMTools SNP 45722 45722 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold42190 SAMTools SNP 46832 46832 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42190 SAMTools SNP 46871 46871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42190 SAMTools SNP 58593 58593 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold42190 SAMTools SNP 59302 59302 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C222:52 scaffold42190 SAMTools SNP 59601 59601 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C46:30 scaffold42190 SAMTools SNP 60688 60688 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold42190 SAMTools SNP 62626 62626 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C16%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42190 SAMTools SNP 63665 63665 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1e-05%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42190 SAMTools SNP 63740 63740 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.26%2C8.1e-10%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C254:59 scaffold42190 SAMTools SNP 63850 63850 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C20%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00076%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold42190 SAMTools SNP 64002 64002 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00072%2C1.6e-28%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42190 SAMTools SNP 64088 64088 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.19%2C0.00016%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C241:99 scaffold42190 SAMTools SNP 64206 64206 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C5.3e-12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42190 SAMTools SNP 66909 66909 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 67221 67221 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42190 SAMTools SNP 67230 67230 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.2%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C179:99 scaffold42190 SAMTools SNP 67291 67291 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C26%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0074%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C56:59 scaffold42190 SAMTools SNP 67302 67302 98 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-109;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C124%2C253%2C0%2C235:99 scaffold42190 SAMTools SNP 67305 67305 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.013%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C236:99 scaffold42190 SAMTools SNP 67771 67771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42190 SAMTools SNP 68089 68089 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42190 SAMTools SNP 68538 68538 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42190 SAMTools SNP 68574 68574 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42190 SAMTools SNP 69098 69098 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42190 SAMTools SNP 69391 69391 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.00046%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C25:28 scaffold42190 SAMTools SNP 69626 69626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42190 SAMTools SNP 70421 70421 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C42%2C0:80 scaffold42190 SAMTools SNP 70619 70619 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42190 SAMTools SNP 70882 70882 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C14:17 scaffold42190 SAMTools SNP 70916 70916 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C81%2C0:99 scaffold42190 SAMTools SNP 70997 70997 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C11%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold42190 SAMTools SNP 71003 71003 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42190 SAMTools SNP 71553 71553 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C12%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.055%2C4.6e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42190 SAMTools SNP 72832 72832 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C32%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.053%2C2.6e-13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42190 SAMTools SNP 75525 75525 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42190 SAMTools SNP 75583 75583 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42190 SAMTools SNP 75709 75709 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.2%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold42190 SAMTools SNP 76857 76857 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.27%2C1.8e-19%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42190 SAMTools SNP 78614 78614 19 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold42190 SAMTools SNP 79030 79030 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C29%2C7%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.09%2C2.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold42190 SAMTools SNP 79264 79264 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42190 SAMTools SNP 79658 79658 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C7%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0073%2C0.2%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold42190 SAMTools SNP 81583 81583 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42190 SAMTools SNP 82011 82011 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42190 SAMTools SNP 83724 83724 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42190 SAMTools SNP 83735 83735 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 83786 83786 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 84121 84121 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42190 SAMTools SNP 84363 84363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42190 SAMTools SNP 84373 84373 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C166:99 scaffold42190 SAMTools SNP 84436 84436 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42190 SAMTools SNP 84454 84454 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.4%2C3e-05%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C85:52 scaffold42190 SAMTools SNP 84465 84465 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42190 SAMTools SNP 85019 85019 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42190 SAMTools SNP 85079 85079 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C18%2C0:33 scaffold42190 SAMTools SNP 85130 85130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42190 SAMTools SNP 85146 85146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42190 SAMTools SNP 86025 86025 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C236%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42190 SAMTools SNP 90383 90383 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C209%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42190 SAMTools SNP 90398 90398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C195%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42190 SAMTools SNP 90521 90521 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42190 SAMTools SNP 90749 90749 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C39%2C0:72 scaffold42190 SAMTools SNP 90983 90983 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold42190 SAMTools SNP 92136 92136 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 93450 93450 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 107985 107985 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 108983 108983 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 109773 109773 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 109897 109897 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 112886 112886 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D58.7%3BPV4%3D1%2C0.11%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C98:89 scaffold42190 SAMTools SNP 113408 113408 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42190 SAMTools SNP 113677 113677 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 114071 114071 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 114485 114485 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42190 SAMTools SNP 115032 115032 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42190 SAMTools SNP 115084 115084 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42190 SAMTools SNP 115130 115130 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 116055 116055 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42190 SAMTools SNP 117070 117070 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold42190 SAMTools SNP 117944 117944 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42190 SAMTools SNP 118777 118777 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 118802 118802 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42190 SAMTools SNP 118915 118915 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 119479 119479 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold42190 SAMTools SNP 119509 119509 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42190 SAMTools SNP 119554 119554 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold42190 SAMTools SNP 119566 119566 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42190 SAMTools SNP 119840 119840 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42190 SAMTools SNP 120053 120053 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42190 SAMTools SNP 120071 120071 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42190 SAMTools SNP 120267 120267 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold42190 SAMTools SNP 120303 120303 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42190 SAMTools SNP 120336 120336 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42190 SAMTools SNP 122029 122029 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold42190 SAMTools SNP 122045 122045 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 122288 122288 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42190 SAMTools SNP 124166 124166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 127275 127275 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.011%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C86:49 scaffold42190 SAMTools SNP 128129 128129 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 128186 128186 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42190 SAMTools SNP 139938 139938 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42198 SAMTools SNP 1132 1132 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42198 SAMTools SNP 2184 2184 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold42198 SAMTools SNP 5807 5807 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.25%2C2.9e-33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42198 SAMTools SNP 5897 5897 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 6820 6820 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 6826 6826 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 10847 10847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 11416 11416 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 11431 11431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42198 SAMTools SNP 11443 11443 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.43%2C0.48%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42198 SAMTools SNP 11461 11461 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C0.049%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42198 SAMTools SNP 14026 14026 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C0.4%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C143:99 scaffold42198 SAMTools SNP 14832 14832 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C4%2C10%3BMQ%3D45%3BFQ%3D217%3BPV4%3D1%2C0.13%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42198 SAMTools SNP 14868 14868 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C47%2C5%2C16%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.21%2C0.48%2C0.064%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 15325 15325 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C40%2C1%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.23%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold42198 SAMTools SNP 15340 15340 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C22%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42198 SAMTools SNP 15370 15370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C30%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42198 SAMTools SNP 17028 17028 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C39%2C14%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 17067 17067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C7%2C30%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.36%2C0.057%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 17742 17742 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42198 SAMTools SNP 20185 20185 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42198 SAMTools SNP 20285 20285 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42198 SAMTools SNP 22559 22559 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42198 SAMTools SNP 23600 23600 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold42198 SAMTools SNP 25908 25908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42198 SAMTools SNP 29118 29118 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42198 SAMTools SNP 29124 29124 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42198 SAMTools SNP 29172 29172 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42198 SAMTools SNP 30760 30760 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42198 SAMTools SNP 30772 30772 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C5:8 scaffold42198 SAMTools SNP 30773 30773 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold42198 SAMTools SNP 47553 47553 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42198 SAMTools SNP 48072 48072 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C10%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C12:15 scaffold42198 SAMTools SNP 48132 48132 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42198 SAMTools SNP 48137 48137 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42198 SAMTools SNP 138568 138568 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C7%3BMQ%3D41%3BFQ%3D28%3BPV4%3D1%2C7.6e-13%2C0.35%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C90:58 scaffold42198 SAMTools SNP 144518 144518 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold42198 SAMTools SNP 145420 145420 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.21%2C2.9e-14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C101:53 scaffold42198 SAMTools SNP 146886 146886 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42198 SAMTools SNP 147003 147003 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C4.1e-28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C210:58 scaffold422 SAMTools SNP 1642 1642 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 1729 1729 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold422 SAMTools SNP 18123 18123 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 18585 18585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold422 SAMTools SNP 21074 21074 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold422 SAMTools SNP 29803 29803 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold422 SAMTools SNP 30188 30188 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold422 SAMTools SNP 30561 30561 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold422 SAMTools SNP 31451 31451 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C114%2C0:99 scaffold422 SAMTools SNP 31723 31723 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C36%2C0:69 scaffold422 SAMTools SNP 32512 32512 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold422 SAMTools SNP 52589 52589 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0086%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C209:54 scaffold422 SAMTools SNP 85046 85046 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.019%2C2.4e-10%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold422 SAMTools SNP 96439 96439 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold422 SAMTools SNP 104505 104505 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.25%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold422 SAMTools SNP 104999 104999 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 109181 109181 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold422 SAMTools SNP 112444 112444 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold422 SAMTools SNP 112626 112626 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C201:99 scaffold422 SAMTools SNP 114469 114469 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold422 SAMTools SNP 120147 120147 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 124610 124610 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold422 SAMTools SNP 124743 124743 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold422 SAMTools SNP 133521 133521 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold422 SAMTools SNP 133548 133548 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.0041%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold422 SAMTools SNP 137422 137422 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0018%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold422 SAMTools SNP 137508 137508 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 140101 140101 34.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold422 SAMTools SNP 140132 140132 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold422 SAMTools SNP 147532 147532 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold422 SAMTools SNP 151207 151207 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 160217 160217 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold422 SAMTools SNP 160292 160292 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold422 SAMTools SNP 160454 160454 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold422 SAMTools SNP 160946 160946 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold422 SAMTools SNP 161347 161347 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold422 SAMTools SNP 161390 161390 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold422 SAMTools SNP 161918 161918 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 161928 161928 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 162733 162733 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold422 SAMTools SNP 162760 162760 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.022%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold422 SAMTools SNP 164279 164279 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 164458 164458 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold422 SAMTools SNP 164463 164463 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold422 SAMTools SNP 166073 166073 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C40:42 scaffold422 SAMTools SNP 166169 166169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 166196 166196 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 177521 177521 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold422 SAMTools SNP 178326 178326 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold422 SAMTools SNP 178380 178380 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold422 SAMTools SNP 180072 180072 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 180094 180094 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold422 SAMTools SNP 180413 180413 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold422 SAMTools SNP 193602 193602 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold422 SAMTools SNP 193794 193794 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold422 SAMTools SNP 194231 194231 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C233:42 scaffold422 SAMTools SNP 194403 194403 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold422 SAMTools SNP 194430 194430 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold422 SAMTools SNP 194559 194559 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold422 SAMTools SNP 194568 194568 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold422 SAMTools SNP 206165 206165 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C51:54 scaffold422 SAMTools SNP 206531 206531 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C88:64 scaffold422 SAMTools SNP 209969 209969 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 211596 211596 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 214281 214281 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.29%2C0.26%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold422 SAMTools SNP 215713 215713 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.067%2C0.061%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C190:99 scaffold422 SAMTools SNP 215770 215770 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0039%2C0.062%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold422 SAMTools SNP 218976 218976 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold422 SAMTools SNP 218982 218982 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C61:64 scaffold422 SAMTools SNP 219048 219048 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.5%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C29:32 scaffold422 SAMTools SNP 221171 221171 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold422 SAMTools SNP 221182 221182 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold422 SAMTools SNP 221201 221201 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold422 SAMTools SNP 221294 221294 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold422 SAMTools SNP 221867 221867 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 221886 221886 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 222209 222209 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold422 SAMTools SNP 241465 241465 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 241491 241491 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 243011 243011 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C5%2C15%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.58%2C1%2C1%2C3.1e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold422 SAMTools SNP 243029 243029 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C34%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.48%2C2.9e-37%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold422 SAMTools SNP 243125 243125 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C137:94 scaffold422 SAMTools SNP 261326 261326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 261377 261377 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C1%2C43%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.00076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 264449 264449 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C28%2C59%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 264467 264467 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C46%2C17%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 264476 264476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C53%2C16%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 266650 266650 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C81%2C20%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 266671 266671 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold422 SAMTools SNP 266756 266756 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C15%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.58%2C5e-36%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold422 SAMTools SNP 266869 266869 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C20%2C38%2C25%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0065%2C8.8e-107%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold422 SAMTools SNP 266881 266881 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold422 SAMTools SNP 267082 267082 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold422 SAMTools SNP 267088 267088 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold422 SAMTools SNP 267091 267091 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold422 SAMTools SNP 267270 267270 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C234:99 scaffold422 SAMTools SNP 270021 270021 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold422 SAMTools SNP 272170 272170 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold422 SAMTools SNP 272491 272491 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C59%2C43%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 274011 274011 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 274367 274367 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 274482 274482 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C16%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C42%2C0:81 scaffold422 SAMTools SNP 274565 274565 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.53%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C247:99 scaffold422 SAMTools SNP 276871 276871 61.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold422 SAMTools SNP 277487 277487 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.55%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold422 SAMTools SNP 277849 277849 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold422 SAMTools SNP 277918 277918 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold422 SAMTools SNP 278074 278074 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold422 SAMTools SNP 279859 279859 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 279873 279873 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 285651 285651 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C42%2C29%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C3.7e-128%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 285792 285792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C68%2C13%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold422 SAMTools SNP 286572 286572 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.37%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold422 SAMTools SNP 286579 286579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold422 SAMTools SNP 288419 288419 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C0%2C32%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.32%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold422 SAMTools SNP 288446 288446 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold422 SAMTools SNP 290035 290035 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C36%2C0:69 scaffold422 SAMTools SNP 290152 290152 56.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold422 SAMTools SNP 290389 290389 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C60%2C0:99 scaffold422 SAMTools SNP 290905 290905 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D24%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C108%2C0:99 scaffold422 SAMTools SNP 294264 294264 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 294286 294286 73.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold422 SAMTools SNP 300365 300365 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C24%2C0:45 scaffold422 SAMTools SNP 308359 308359 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold422 SAMTools SNP 311469 311469 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold422 SAMTools SNP 311527 311527 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold422 SAMTools SNP 336972 336972 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold422 SAMTools SNP 336998 336998 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold422 SAMTools SNP 345226 345226 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold422 SAMTools SNP 345242 345242 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold422 SAMTools SNP 345268 345268 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold422 SAMTools SNP 345758 345758 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold422 SAMTools SNP 472217 472217 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 472257 472257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 485454 485454 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold422 SAMTools SNP 486467 486467 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold422 SAMTools SNP 550606 550606 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C153:28 scaffold42208 SAMTools SNP 5853 5853 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0175%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C0%3BMQ%3D23%3BFQ%3D-4.76%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C24:27 scaffold42208 SAMTools SNP 5865 5865 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0227%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C12%2C3%2C0%3BMQ%3D26%3BFQ%3D-3.53%3BPV4%3D0.0022%2C0.45%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C26:29 scaffold42208 SAMTools SNP 6385 6385 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C10%3BMQ%3D28%3BFQ%3D5.47%3BPV4%3D0.0035%2C1%2C0.00029%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold42208 SAMTools SNP 6435 6435 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42208 SAMTools SNP 6942 6942 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42208 SAMTools SNP 7623 7623 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C33%2C0:63 scaffold42208 SAMTools SNP 7752 7752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42208 SAMTools SNP 54698 54698 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42208 SAMTools SNP 68086 68086 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42208 SAMTools SNP 102708 102708 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42208 SAMTools SNP 104489 104489 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42208 SAMTools SNP 104520 104520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42208 SAMTools SNP 127056 127056 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold42208 SAMTools SNP 127127 127127 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold42208 SAMTools SNP 127209 127209 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold42208 SAMTools SNP 128564 128564 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42210 SAMTools SNP 341 341 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 474 474 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 33560 33560 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.022%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C172:42 scaffold42210 SAMTools SNP 33942 33942 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 62051 62051 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C228:99 scaffold42210 SAMTools SNP 62070 62070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42210 SAMTools SNP 62348 62348 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C99%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-08%2C1%2C1%2C2.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42210 SAMTools SNP 63532 63532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C8%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42210 SAMTools SNP 64356 64356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42210 SAMTools SNP 64451 64451 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 64459 64459 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42210 SAMTools SNP 105591 105591 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C85:88 scaffold42210 SAMTools SNP 105653 105653 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 105878 105878 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42210 SAMTools SNP 105927 105927 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C113:88 scaffold42210 SAMTools SNP 107206 107206 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold42210 SAMTools SNP 107267 107267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42210 SAMTools SNP 108101 108101 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42210 SAMTools SNP 108145 108145 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42210 SAMTools SNP 108218 108218 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold42210 SAMTools SNP 108899 108899 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C236:65 scaffold42210 SAMTools SNP 108915 108915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42210 SAMTools SNP 108951 108951 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C150:99 scaffold42210 SAMTools SNP 108952 108952 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C253:99 scaffold42210 SAMTools SNP 110725 110725 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.052%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42210 SAMTools SNP 129405 129405 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42210 SAMTools SNP 129416 129416 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42214 SAMTools SNP 24686 24686 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42214 SAMTools SNP 24820 24820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42214 SAMTools SNP 29371 29371 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42214 SAMTools SNP 41598 41598 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42214 SAMTools SNP 41617 41617 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42214 SAMTools SNP 42714 42714 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold42214 SAMTools SNP 43048 43048 23.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold42214 SAMTools SNP 43887 43887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 43932 43932 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold42214 SAMTools SNP 44491 44491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42214 SAMTools SNP 45355 45355 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42214 SAMTools SNP 45358 45358 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42214 SAMTools SNP 45475 45475 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42214 SAMTools SNP 46875 46875 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 50509 50509 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 50521 50521 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 50665 50665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 51042 51042 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C8%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 51154 51154 22.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold42214 SAMTools SNP 51217 51217 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42214 SAMTools SNP 51434 51434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 51805 51805 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold42214 SAMTools SNP 51932 51932 33.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold42214 SAMTools SNP 51950 51950 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C1%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.41%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42214 SAMTools SNP 51975 51975 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C57%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42214 SAMTools SNP 52855 52855 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42214 SAMTools SNP 53218 53218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42214 SAMTools SNP 53524 53524 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold42214 SAMTools SNP 53570 53570 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold42214 SAMTools SNP 53653 53653 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42214 SAMTools SNP 55614 55614 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42214 SAMTools SNP 55727 55727 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42214 SAMTools SNP 56056 56056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42214 SAMTools SNP 56113 56113 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold42214 SAMTools SNP 56140 56140 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42214 SAMTools SNP 57624 57624 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42214 SAMTools SNP 57627 57627 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42214 SAMTools SNP 57878 57878 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42214 SAMTools SNP 62939 62939 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold42214 SAMTools SNP 62968 62968 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.03%2C0.2%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42214 SAMTools SNP 64387 64387 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.39%2C2.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42214 SAMTools SNP 64441 64441 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C9%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.062%2C6.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42214 SAMTools SNP 65224 65224 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42214 SAMTools SNP 66338 66338 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C89%2C3%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 72565 72565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42214 SAMTools SNP 72581 72581 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C2:5 scaffold42214 SAMTools SNP 73453 73453 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold42214 SAMTools SNP 73811 73811 57.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold42214 SAMTools SNP 74187 74187 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42214 SAMTools SNP 74313 74313 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold42214 SAMTools SNP 74892 74892 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold42214 SAMTools SNP 75172 75172 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C8.1e-09%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C23:26 scaffold42214 SAMTools SNP 75693 75693 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.24%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C243:46 scaffold42214 SAMTools SNP 77284 77284 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold42214 SAMTools SNP 77519 77519 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42214 SAMTools SNP 77763 77763 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42214 SAMTools SNP 83249 83249 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42214 SAMTools SNP 83557 83557 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C158%2C21%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42214 SAMTools SNP 83714 83714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C258%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42214 SAMTools SNP 83738 83738 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C132%2C275%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42214 SAMTools SNP 83937 83937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42214 SAMTools SNP 84009 84009 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D646%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C415%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42214 SAMTools SNP 84185 84185 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42214 SAMTools SNP 84620 84620 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C196:40 scaffold42214 SAMTools SNP 84818 84818 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold42214 SAMTools SNP 85026 85026 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold42214 SAMTools SNP 92429 92429 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold42214 SAMTools SNP 92894 92894 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold42214 SAMTools SNP 93454 93454 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold42214 SAMTools SNP 93929 93929 38.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42214 SAMTools SNP 96202 96202 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42214 SAMTools SNP 96524 96524 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42214 SAMTools SNP 98284 98284 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42214 SAMTools SNP 99290 99290 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.5e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C239:47 scaffold42214 SAMTools SNP 99444 99444 134 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold42214 SAMTools SNP 100716 100716 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C34%2C2%3BMQ%3D49%3BFQ%3D221%3BPV4%3D1%2C0.042%2C0.044%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42214 SAMTools SNP 100759 100759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C34%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 103361 103361 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold42214 SAMTools SNP 109137 109137 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold42214 SAMTools SNP 110413 110413 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42214 SAMTools SNP 112304 112304 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42214 SAMTools SNP 112306 112306 38.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42214 SAMTools SNP 112922 112922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42214 SAMTools SNP 112946 112946 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.018%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42214 SAMTools SNP 113204 113204 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.071%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold42214 SAMTools SNP 113251 113251 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0081%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold42214 SAMTools SNP 113302 113302 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 114321 114321 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.54%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42214 SAMTools SNP 114323 114323 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0134%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.022%2C8.5e-08%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42214 SAMTools SNP 114387 114387 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42214 SAMTools SNP 114648 114648 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42214 SAMTools SNP 123914 123914 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C12%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.00061%2C1%2C1%2C6.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold42214 SAMTools SNP 124973 124973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C5.4e-37%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42214 SAMTools SNP 125077 125077 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C22%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C2.7e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42214 SAMTools SNP 125205 125205 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C50%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C163%2C0:99 scaffold42214 SAMTools SNP 125326 125326 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42214 SAMTools SNP 133215 133215 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42214 SAMTools SNP 133230 133230 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.15%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42214 SAMTools SNP 133254 133254 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold42226 SAMTools SNP 12234 12234 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C20%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.46%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C13%2C0:23 scaffold42226 SAMTools SNP 12258 12258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42226 SAMTools SNP 12665 12665 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold42226 SAMTools SNP 13621 13621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42226 SAMTools SNP 13627 13627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42226 SAMTools SNP 13675 13675 62.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold42226 SAMTools SNP 13715 13715 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42226 SAMTools SNP 14589 14589 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42226 SAMTools SNP 14655 14655 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42226 SAMTools SNP 14990 14990 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42226 SAMTools SNP 22926 22926 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42226 SAMTools SNP 22956 22956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C3%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42226 SAMTools SNP 23850 23850 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 23964 23964 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 23970 23970 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 25115 25115 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.4%2C0.0028%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold42226 SAMTools SNP 25435 25435 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42226 SAMTools SNP 25943 25943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42226 SAMTools SNP 25964 25964 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 26347 26347 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C99:99 scaffold42226 SAMTools SNP 26354 26354 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C222:99 scaffold42226 SAMTools SNP 26432 26432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42226 SAMTools SNP 27542 27542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42226 SAMTools SNP 27575 27575 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42226 SAMTools SNP 28345 28345 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C72%2C0:99 scaffold42226 SAMTools SNP 28402 28402 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42226 SAMTools SNP 31578 31578 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.4e-10%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42226 SAMTools SNP 33332 33332 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C9%3BMQ%3D44%3BFQ%3D212%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold42226 SAMTools SNP 33676 33676 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C185:76 scaffold42226 SAMTools SNP 33721 33721 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 33764 33764 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42226 SAMTools SNP 34208 34208 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 34629 34629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 34734 34734 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C21%2C0:39 scaffold42226 SAMTools SNP 38366 38366 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 38425 38425 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42226 SAMTools SNP 38525 38525 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42226 SAMTools SNP 41374 41374 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42226 SAMTools SNP 41405 41405 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42226 SAMTools SNP 41793 41793 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42226 SAMTools SNP 42250 42250 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C65%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold42226 SAMTools SNP 42883 42883 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C52%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42226 SAMTools SNP 44062 44062 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42226 SAMTools SNP 44116 44116 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold42226 SAMTools SNP 44449 44449 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42226 SAMTools SNP 44457 44457 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold42226 SAMTools SNP 46781 46781 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42226 SAMTools SNP 46829 46829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42226 SAMTools SNP 46856 46856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold42226 SAMTools SNP 47506 47506 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold42226 SAMTools SNP 47561 47561 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.23%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold42226 SAMTools SNP 50130 50130 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 50235 50235 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42226 SAMTools SNP 50238 50238 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42226 SAMTools SNP 51029 51029 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42226 SAMTools SNP 51081 51081 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 51996 51996 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C8%2C48%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 52077 52077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42226 SAMTools SNP 52463 52463 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold42226 SAMTools SNP 52991 52991 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C33%2C0:63 scaffold42226 SAMTools SNP 53000 53000 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C132:99 scaffold42226 SAMTools SNP 58145 58145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C7e-06%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 58817 58817 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42226 SAMTools SNP 60232 60232 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1.5e-08%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 64387 64387 36.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold42226 SAMTools SNP 64481 64481 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42226 SAMTools SNP 64497 64497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42226 SAMTools SNP 67247 67247 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C24%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42226 SAMTools SNP 67265 67265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 67319 67319 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 67783 67783 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 67819 67819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 70835 70835 10.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D31%3BFQ%3D-42%3BPV4%3D1%2C2e-09%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold42226 SAMTools SNP 74443 74443 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C0%3BMQ%3D45%3BFQ%3D144%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42226 SAMTools SNP 74449 74449 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C0%3BMQ%3D45%3BFQ%3D144%3BPV4%3D0.0052%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42226 SAMTools SNP 76949 76949 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42226 SAMTools SNP 76962 76962 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold42226 SAMTools SNP 76976 76976 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold42226 SAMTools SNP 77268 77268 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42226 SAMTools SNP 78686 78686 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-08%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 78737 78737 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 79666 79666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.055%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 79759 79759 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C20%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C7.2e-18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 80328 80328 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C27%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold42226 SAMTools SNP 80350 80350 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C16%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 80623 80623 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C32%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42226 SAMTools SNP 80662 80662 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42226 SAMTools SNP 82351 82351 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42226 SAMTools SNP 83243 83243 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42226 SAMTools SNP 83267 83267 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42226 SAMTools SNP 84323 84323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C33%2C40%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 84324 84324 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C28%2C41%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 85047 85047 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42226 SAMTools SNP 93606 93606 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42226 SAMTools SNP 98093 98093 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 98117 98117 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 100133 100133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42226 SAMTools SNP 100616 100616 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42226 SAMTools SNP 100763 100763 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42226 SAMTools SNP 104722 104722 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D37%3BFQ%3D43%3BPV4%3D1%2C1%2C0.34%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C70:73 scaffold42226 SAMTools SNP 104740 104740 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C30%2C0:57 scaffold42226 SAMTools SNP 104792 104792 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D24%3BFQ%3D3.67%3BPV4%3D0.22%2C0.39%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C29:32 scaffold42226 SAMTools SNP 105358 105358 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42226 SAMTools SNP 106803 106803 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42226 SAMTools SNP 118754 118754 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 777 777 7.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C10%2C7%2C37%2C0%2C34:4 scaffold42236 SAMTools SNP 4035 4035 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C71:48 scaffold42236 SAMTools SNP 4102 4102 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.49%2C0.039%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C157:86 scaffold42236 SAMTools SNP 4454 4454 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42236 SAMTools SNP 15765 15765 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42236 SAMTools SNP 16360 16360 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C69:34 scaffold42236 SAMTools SNP 17276 17276 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42236 SAMTools SNP 17532 17532 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42236 SAMTools SNP 17544 17544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42236 SAMTools SNP 18134 18134 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42236 SAMTools SNP 18258 18258 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold42236 SAMTools SNP 18268 18268 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.046%2C7.2e-10%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42236 SAMTools SNP 18784 18784 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42236 SAMTools SNP 18790 18790 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42236 SAMTools SNP 19217 19217 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42236 SAMTools SNP 21196 21196 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold42236 SAMTools SNP 21309 21309 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.86%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C34:28 scaffold42236 SAMTools SNP 21638 21638 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42236 SAMTools SNP 21774 21774 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C27%2C0:51 scaffold42236 SAMTools SNP 22743 22743 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42236 SAMTools SNP 23608 23608 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42236 SAMTools SNP 23666 23666 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold42236 SAMTools SNP 24229 24229 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42236 SAMTools SNP 24330 24330 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold42236 SAMTools SNP 24334 24334 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold42236 SAMTools SNP 24715 24715 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold42236 SAMTools SNP 25076 25076 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42236 SAMTools SNP 25640 25640 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C44:47 scaffold42236 SAMTools SNP 25984 25984 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42236 SAMTools SNP 26032 26032 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 27369 27369 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C134:99 scaffold42236 SAMTools SNP 27393 27393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42236 SAMTools SNP 27396 27396 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold42236 SAMTools SNP 27474 27474 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42236 SAMTools SNP 28200 28200 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42236 SAMTools SNP 30455 30455 7.18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C15%2C0:18 scaffold42236 SAMTools SNP 32808 32808 90 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C45%2C0:87 scaffold42236 SAMTools SNP 34744 34744 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C30%2C19%3BMQ%3D50%3BFQ%3D193%3BPV4%3D3.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold42236 SAMTools SNP 34756 34756 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C0%2C20%3BMQ%3D50%3BFQ%3D177%3BPV4%3D8.2e-08%2C0.45%2C1%2C6.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold42236 SAMTools SNP 34777 34777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42236 SAMTools SNP 35211 35211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C28%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold42236 SAMTools SNP 36493 36493 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42236 SAMTools SNP 36529 36529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.7e-08%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 36565 36565 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C2.9e-41%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 36607 36607 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.00022%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42236 SAMTools SNP 36621 36621 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold42236 SAMTools SNP 36882 36882 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 37157 37157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C17%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42236 SAMTools SNP 37185 37185 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 37627 37627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 44852 44852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42236 SAMTools SNP 45648 45648 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D0.17%2C0.22%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42236 SAMTools SNP 49092 49092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 49193 49193 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C193%2C0:99 scaffold42236 SAMTools SNP 50420 50420 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42236 SAMTools SNP 55910 55910 75.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold42236 SAMTools SNP 70908 70908 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42236 SAMTools SNP 70978 70978 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 72280 72280 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 72307 72307 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 72451 72451 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 73107 73107 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 73114 73114 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 73422 73422 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42236 SAMTools SNP 73458 73458 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42236 SAMTools SNP 73902 73902 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42236 SAMTools SNP 73918 73918 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42236 SAMTools SNP 75488 75488 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 76223 76223 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 76283 76283 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42236 SAMTools SNP 76857 76857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42236 SAMTools SNP 76944 76944 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42236 SAMTools SNP 77880 77880 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold42236 SAMTools SNP 78236 78236 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42236 SAMTools SNP 78281 78281 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42236 SAMTools SNP 78299 78299 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42236 SAMTools SNP 78560 78560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold42236 SAMTools SNP 79571 79571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42236 SAMTools SNP 80169 80169 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold42236 SAMTools SNP 80733 80733 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42236 SAMTools SNP 80736 80736 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42236 SAMTools SNP 80805 80805 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C9%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42236 SAMTools SNP 80853 80853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42236 SAMTools SNP 81193 81193 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C66%2C28%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D2e-08%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold42236 SAMTools SNP 81640 81640 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42236 SAMTools SNP 82834 82834 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C250:99 scaffold42236 SAMTools SNP 82848 82848 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42236 SAMTools SNP 83194 83194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42236 SAMTools SNP 84389 84389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 84920 84920 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0034%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42236 SAMTools SNP 85752 85752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42236 SAMTools SNP 86142 86142 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold42236 SAMTools SNP 86151 86151 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42236 SAMTools SNP 88666 88666 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C233:99 scaffold42236 SAMTools SNP 88692 88692 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold42236 SAMTools SNP 104354 104354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42236 SAMTools SNP 104641 104641 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C242:99 scaffold42236 SAMTools SNP 105249 105249 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.082%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42236 SAMTools SNP 105294 105294 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold42236 SAMTools SNP 105295 105295 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.37%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold42236 SAMTools SNP 105511 105511 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42236 SAMTools SNP 105544 105544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold42236 SAMTools SNP 105562 105562 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42236 SAMTools SNP 105894 105894 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42236 SAMTools SNP 106696 106696 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42236 SAMTools SNP 107081 107081 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C87%2C0:99 scaffold42236 SAMTools SNP 107513 107513 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 108323 108323 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42236 SAMTools SNP 108463 108463 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.54%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42236 SAMTools SNP 108770 108770 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42236 SAMTools SNP 108786 108786 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C12%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.3%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold42236 SAMTools SNP 108804 108804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42236 SAMTools SNP 109256 109256 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42236 SAMTools SNP 109259 109259 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42236 SAMTools SNP 109717 109717 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.42%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42236 SAMTools SNP 109757 109757 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42236 SAMTools SNP 109928 109928 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C4%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold42236 SAMTools SNP 112133 112133 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C22%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C249:99 scaffold42236 SAMTools SNP 112155 112155 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.2%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C221:94 scaffold42236 SAMTools SNP 112438 112438 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42236 SAMTools SNP 112546 112546 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold42236 SAMTools SNP 115004 115004 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C44%2C2%2C12%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.49%2C0.02%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42236 SAMTools SNP 115008 115008 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C0%2C17%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.017%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold42236 SAMTools SNP 115538 115538 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C2%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 118294 118294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42236 SAMTools SNP 118315 118315 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold42236 SAMTools SNP 118649 118649 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42236 SAMTools SNP 118695 118695 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 118913 118913 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold42236 SAMTools SNP 118973 118973 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold42236 SAMTools SNP 119093 119093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D0.36%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold42236 SAMTools SNP 119383 119383 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42236 SAMTools SNP 119407 119407 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42236 SAMTools SNP 119419 119419 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42236 SAMTools SNP 119434 119434 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C59:62 scaffold42236 SAMTools SNP 119927 119927 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42236 SAMTools SNP 120023 120023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42236 SAMTools SNP 120053 120053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 120435 120435 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 120462 120462 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C10%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.15%2C0.0019%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42236 SAMTools SNP 120498 120498 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.068%2C0.48%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42236 SAMTools SNP 120504 120504 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.011%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold42236 SAMTools SNP 120865 120865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42236 SAMTools SNP 120907 120907 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold42236 SAMTools SNP 120922 120922 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 120961 120961 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42236 SAMTools SNP 121356 121356 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C231:99 scaffold42236 SAMTools SNP 121362 121362 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C207:99 scaffold42236 SAMTools SNP 122497 122497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42236 SAMTools SNP 122539 122539 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42236 SAMTools SNP 126363 126363 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42236 SAMTools SNP 126439 126439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42236 SAMTools SNP 126658 126658 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold42236 SAMTools SNP 126748 126748 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold42236 SAMTools SNP 127060 127060 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42236 SAMTools SNP 127063 127063 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42236 SAMTools SNP 127069 127069 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold42236 SAMTools SNP 127096 127096 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42236 SAMTools SNP 127105 127105 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.11%2C0.073%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42236 SAMTools SNP 127449 127449 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42236 SAMTools SNP 127476 127476 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42236 SAMTools SNP 127896 127896 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42236 SAMTools SNP 129016 129016 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42236 SAMTools SNP 129031 129031 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42236 SAMTools SNP 129477 129477 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C47%2C0:91 scaffold42236 SAMTools SNP 129498 129498 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42236 SAMTools SNP 129565 129565 226 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D2%2C2%2C11%2C46%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C4:7 scaffold42236 SAMTools SNP 129737 129737 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C34%2C6%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.21%2C0.42%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold42236 SAMTools SNP 129988 129988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42236 SAMTools SNP 130123 130123 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold42236 SAMTools SNP 130129 130129 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C22%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0078%2C4.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42236 SAMTools SNP 130276 130276 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C56%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D4.7e-07%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold42236 SAMTools SNP 130303 130303 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C44%2C22%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0022%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold42236 SAMTools SNP 131377 131377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42236 SAMTools SNP 131670 131670 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold42236 SAMTools SNP 132027 132027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42236 SAMTools SNP 132045 132045 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42236 SAMTools SNP 132144 132144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold42236 SAMTools SNP 132159 132159 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C39%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.46%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 132347 132347 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42236 SAMTools SNP 132428 132428 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C60%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 132578 132578 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42236 SAMTools SNP 132605 132605 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold42236 SAMTools SNP 132880 132880 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 133437 133437 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42236 SAMTools SNP 133464 133464 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42236 SAMTools SNP 133660 133660 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C18%2C0:33 scaffold42236 SAMTools SNP 133711 133711 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42236 SAMTools SNP 133714 133714 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42236 SAMTools SNP 134265 134265 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42236 SAMTools SNP 134306 134306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42236 SAMTools SNP 134599 134599 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42236 SAMTools SNP 134608 134608 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42236 SAMTools SNP 134880 134880 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C86%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 134896 134896 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C66%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42236 SAMTools SNP 134937 134937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42236 SAMTools SNP 134943 134943 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C93%2C0%2C37%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42236 SAMTools SNP 135330 135330 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C94%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold42236 SAMTools SNP 135369 135369 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42236 SAMTools SNP 135374 135374 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42236 SAMTools SNP 135492 135492 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42236 SAMTools SNP 135834 135834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42236 SAMTools SNP 135894 135894 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C2.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold42236 SAMTools SNP 135903 135903 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C33%2C0:63 scaffold42236 SAMTools SNP 135918 135918 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.00025%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold42236 SAMTools SNP 136239 136239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42236 SAMTools SNP 136270 136270 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold42236 SAMTools SNP 136654 136654 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C66%2C0:99 scaffold42236 SAMTools SNP 137801 137801 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42236 SAMTools SNP 138118 138118 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42236 SAMTools SNP 138166 138166 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 138419 138419 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 138438 138438 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 139265 139265 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42236 SAMTools SNP 140554 140554 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C27%2C0:51 scaffold42236 SAMTools SNP 140635 140635 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold42236 SAMTools SNP 140971 140971 31.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C14:17 scaffold42236 SAMTools SNP 141019 141019 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C26:29 scaffold42236 SAMTools SNP 141022 141022 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C7%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.42%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold42236 SAMTools SNP 142028 142028 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold42236 SAMTools SNP 144021 144021 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42236 SAMTools SNP 144376 144376 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42236 SAMTools SNP 144823 144823 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold42236 SAMTools SNP 145850 145850 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42236 SAMTools SNP 145929 145929 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.41%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42236 SAMTools SNP 145955 145955 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42236 SAMTools SNP 146351 146351 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C197:99 scaffold42236 SAMTools SNP 147015 147015 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold42236 SAMTools SNP 147047 147047 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42236 SAMTools SNP 150010 150010 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42236 SAMTools SNP 150067 150067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold42236 SAMTools SNP 150348 150348 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C0.067%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42236 SAMTools SNP 150387 150387 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold42236 SAMTools SNP 150823 150823 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42236 SAMTools SNP 150883 150883 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42236 SAMTools SNP 150895 150895 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold42246 SAMTools SNP 328 328 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold42246 SAMTools SNP 676 676 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold42246 SAMTools SNP 1058 1058 40.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold42246 SAMTools SNP 9346 9346 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42246 SAMTools SNP 9457 9457 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42246 SAMTools SNP 9586 9586 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 11397 11397 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold42246 SAMTools SNP 12015 12015 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42246 SAMTools SNP 13894 13894 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold42246 SAMTools SNP 13906 13906 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42246 SAMTools SNP 14128 14128 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold42246 SAMTools SNP 15493 15493 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold42246 SAMTools SNP 15664 15664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold42246 SAMTools SNP 19086 19086 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C236:99 scaffold42246 SAMTools SNP 19122 19122 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold42246 SAMTools SNP 20735 20735 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 20738 20738 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 20922 20922 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42246 SAMTools SNP 20933 20933 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.28%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42246 SAMTools SNP 21377 21377 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42246 SAMTools SNP 21563 21563 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42246 SAMTools SNP 21907 21907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42246 SAMTools SNP 22320 22320 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C16%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42246 SAMTools SNP 22376 22376 199 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold42246 SAMTools SNP 22848 22848 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42246 SAMTools SNP 22858 22858 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42246 SAMTools SNP 25761 25761 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42246 SAMTools SNP 25809 25809 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42246 SAMTools SNP 25830 25830 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold42246 SAMTools SNP 26007 26007 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.05%2C1.4e-11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C242:99 scaffold42246 SAMTools SNP 26155 26155 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 26601 26601 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42246 SAMTools SNP 26779 26779 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42246 SAMTools SNP 27228 27228 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C236:99 scaffold42246 SAMTools SNP 28491 28491 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C2%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42246 SAMTools SNP 28520 28520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42246 SAMTools SNP 28640 28640 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C186:28 scaffold42246 SAMTools SNP 29279 29279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42246 SAMTools SNP 29351 29351 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42246 SAMTools SNP 29755 29755 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42246 SAMTools SNP 29764 29764 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42246 SAMTools SNP 29884 29884 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.024%2C0.41%2C1%2C7.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold42246 SAMTools SNP 29902 29902 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.045%2C0.4%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold42246 SAMTools SNP 30242 30242 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold42246 SAMTools SNP 30422 30422 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold42246 SAMTools SNP 30985 30985 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42246 SAMTools SNP 31009 31009 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 31583 31583 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42246 SAMTools SNP 32228 32228 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42246 SAMTools SNP 32252 32252 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42246 SAMTools SNP 32634 32634 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42246 SAMTools SNP 32670 32670 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42246 SAMTools SNP 32676 32676 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42246 SAMTools SNP 32772 32772 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42246 SAMTools SNP 32781 32781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42246 SAMTools SNP 33494 33494 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C3%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.089%2C6.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42246 SAMTools SNP 33542 33542 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold42246 SAMTools SNP 33557 33557 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.29%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C185:99 scaffold42246 SAMTools SNP 33934 33934 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C21%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42246 SAMTools SNP 34318 34318 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C2%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42246 SAMTools SNP 34913 34913 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C27%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 34937 34937 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C4%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 35708 35708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C54%2C8%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 35756 35756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42246 SAMTools SNP 36284 36284 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.3%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C237:99 scaffold42246 SAMTools SNP 37618 37618 54.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold42246 SAMTools SNP 39853 39853 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C169%2C0:99 scaffold42246 SAMTools SNP 39921 39921 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C51%2C0:97 scaffold42246 SAMTools SNP 40146 40146 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C46%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C166%2C0:99 scaffold42246 SAMTools SNP 42689 42689 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42246 SAMTools SNP 42799 42799 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C53%2C131%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1e-20%2C1.2e-123%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C180:85 scaffold42246 SAMTools SNP 42872 42872 45.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold42246 SAMTools SNP 43581 43581 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C70%2C35%2C49%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.89%2C1.1e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold42246 SAMTools SNP 44579 44579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C95%2C37%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 45052 45052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C67%2C35%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C0.28%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 45840 45840 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D90%2C87%2C0%2C42%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1.1e-11%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42246 SAMTools SNP 46191 46191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C38%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.052%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 46634 46634 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C43%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42246 SAMTools SNP 47746 47746 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C54%2C8%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D3e-10%2C2.1e-14%2C1%2C6.1e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C206:33 scaffold42246 SAMTools SNP 47880 47880 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42246 SAMTools SNP 53991 53991 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 56022 56022 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42246 SAMTools SNP 56850 56850 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42246 SAMTools SNP 62243 62243 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 62536 62536 173 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C47%2C26%2C194%2C0%2C191:39 scaffold42246 SAMTools SNP 62582 62582 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42246 SAMTools SNP 62817 62817 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42246 SAMTools SNP 62832 62832 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42246 SAMTools SNP 63007 63007 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42246 SAMTools SNP 63030 63030 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42246 SAMTools SNP 63048 63048 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0084%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold42246 SAMTools SNP 63050 63050 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C126:76 scaffold42246 SAMTools SNP 63851 63851 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C2%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold42246 SAMTools SNP 63902 63902 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 64014 64014 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C78%2C0:99 scaffold42246 SAMTools SNP 64041 64041 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42246 SAMTools SNP 72113 72113 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42246 SAMTools SNP 72254 72254 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42246 SAMTools SNP 72567 72567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42246 SAMTools SNP 72627 72627 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42246 SAMTools SNP 87009 87009 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.43%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C171:44 scaffold42246 SAMTools SNP 88317 88317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42246 SAMTools SNP 88352 88352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42246 SAMTools SNP 103826 103826 35.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold42246 SAMTools SNP 116931 116931 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 118194 118194 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42246 SAMTools SNP 140979 140979 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C14%2C26%3BMQ%3D44%3BFQ%3D56%3BPV4%3D0.38%2C6e-41%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42252 SAMTools SNP 27963 27963 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42252 SAMTools SNP 50336 50336 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold42252 SAMTools SNP 50357 50357 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold42252 SAMTools SNP 51216 51216 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold42252 SAMTools SNP 52307 52307 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C113:37 scaffold42252 SAMTools SNP 54520 54520 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42252 SAMTools SNP 54922 54922 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.14%2C6.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42252 SAMTools SNP 55105 55105 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C3.4e-10%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42252 SAMTools SNP 55402 55402 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42252 SAMTools SNP 73112 73112 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42252 SAMTools SNP 73124 73124 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42252 SAMTools SNP 76943 76943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42252 SAMTools SNP 76987 76987 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C25%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C244:99 scaffold42252 SAMTools SNP 84306 84306 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C31%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C248:99 scaffold42252 SAMTools SNP 85286 85286 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42252 SAMTools SNP 85301 85301 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42252 SAMTools SNP 86155 86155 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42252 SAMTools SNP 87873 87873 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold42252 SAMTools SNP 88905 88905 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.13%2C5.5e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C237:79 scaffold42252 SAMTools SNP 91396 91396 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C12%2C0:21 scaffold42252 SAMTools SNP 92034 92034 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold42252 SAMTools SNP 92388 92388 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C2.2e-05%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C77:58 scaffold42252 SAMTools SNP 92413 92413 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold42252 SAMTools SNP 92436 92436 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold42252 SAMTools SNP 96382 96382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42252 SAMTools SNP 107307 107307 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42252 SAMTools SNP 109174 109174 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C69%2C1%2C58%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0022%2C0.042%2C1%2C1e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42252 SAMTools SNP 109176 109176 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C131%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42252 SAMTools SNP 110346 110346 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42252 SAMTools SNP 110517 110517 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold42252 SAMTools SNP 110535 110535 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42252 SAMTools SNP 110541 110541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42252 SAMTools SNP 112393 112393 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42252 SAMTools SNP 114281 114281 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C45%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.011%2C0.42%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold42252 SAMTools SNP 114296 114296 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.00061%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42252 SAMTools SNP 117987 117987 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold42252 SAMTools SNP 118246 118246 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C244%2C0:99 scaffold42252 SAMTools SNP 120223 120223 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42252 SAMTools SNP 120231 120231 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42252 SAMTools SNP 120242 120242 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42252 SAMTools SNP 122388 122388 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42252 SAMTools SNP 132312 132312 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42252 SAMTools SNP 139735 139735 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.12%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42252 SAMTools SNP 140326 140326 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42252 SAMTools SNP 140402 140402 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.19%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42252 SAMTools SNP 141253 141253 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.45%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C106:99 scaffold42252 SAMTools SNP 141633 141633 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D49%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42252 SAMTools SNP 141670 141670 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C8%2C0%3BMQ%3D49%3BFQ%3D96%3BPV4%3D1%2C0.025%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C230:99 scaffold42252 SAMTools SNP 142008 142008 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C216:99 scaffold42252 SAMTools SNP 143081 143081 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0007%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42252 SAMTools SNP 143516 143516 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42252 SAMTools SNP 144530 144530 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold42252 SAMTools SNP 144608 144608 167 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C12%2C191%2C0%2C188:33 scaffold42252 SAMTools SNP 146559 146559 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.3e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C162:49 scaffold42252 SAMTools SNP 152245 152245 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C51%2C0:99 scaffold42252 SAMTools SNP 153074 153074 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 13195 13195 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 22970 22970 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42262 SAMTools SNP 23000 23000 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42262 SAMTools SNP 23027 23027 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42262 SAMTools SNP 23057 23057 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42262 SAMTools SNP 23319 23319 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42262 SAMTools SNP 23695 23695 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42262 SAMTools SNP 26376 26376 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 26541 26541 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42262 SAMTools SNP 33187 33187 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C0.15%2C1%2C2.7e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C230:68 scaffold42262 SAMTools SNP 34423 34423 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42262 SAMTools SNP 36104 36104 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42262 SAMTools SNP 36820 36820 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42262 SAMTools SNP 36840 36840 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42262 SAMTools SNP 37092 37092 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42262 SAMTools SNP 37117 37117 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42262 SAMTools SNP 37153 37153 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C134:99 scaffold42262 SAMTools SNP 37571 37571 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold42262 SAMTools SNP 38114 38114 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C124:99 scaffold42262 SAMTools SNP 41307 41307 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42262 SAMTools SNP 47530 47530 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C4%2C47%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 47951 47951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C19%2C45%2C38%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 48005 48005 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C15%2C30%2C30%3BMQ%3D42%3BFQ%3D117%3BPV4%3D2.1e-05%2C1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold42262 SAMTools SNP 48110 48110 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold42262 SAMTools SNP 52782 52782 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 56629 56629 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42262 SAMTools SNP 56866 56866 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42262 SAMTools SNP 56868 56868 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 63514 63514 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C1%3BMQ%3D45%3BFQ%3D-47%3BPV4%3D0.2%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C20%2C0:37 scaffold42262 SAMTools SNP 63535 63535 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42262 SAMTools SNP 63683 63683 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C33:36 scaffold42262 SAMTools SNP 66244 66244 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold42262 SAMTools SNP 66252 66252 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold42262 SAMTools SNP 66273 66273 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42262 SAMTools SNP 71609 71609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42262 SAMTools SNP 79044 79044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 79212 79212 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42262 SAMTools SNP 79291 79291 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.44%2C0.12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C139:96 scaffold42262 SAMTools SNP 79816 79816 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C231:99 scaffold42262 SAMTools SNP 80128 80128 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold42262 SAMTools SNP 81838 81838 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42262 SAMTools SNP 81891 81891 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42262 SAMTools SNP 82891 82891 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 82924 82924 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C37:40 scaffold42262 SAMTools SNP 82999 82999 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold42262 SAMTools SNP 83222 83222 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold42262 SAMTools SNP 83594 83594 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C54%2C0:99 scaffold42262 SAMTools SNP 84061 84061 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42262 SAMTools SNP 84490 84490 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C0.23%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42262 SAMTools SNP 84709 84709 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42262 SAMTools SNP 85055 85055 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42262 SAMTools SNP 85118 85118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 85445 85445 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 86914 86914 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 86949 86949 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.16%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42262 SAMTools SNP 87130 87130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42262 SAMTools SNP 87183 87183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold42262 SAMTools SNP 87656 87656 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D2%2C1%2C24%2C13%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.14%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold42262 SAMTools SNP 88023 88023 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold42262 SAMTools SNP 88059 88059 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42262 SAMTools SNP 88086 88086 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42262 SAMTools SNP 93658 93658 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 93681 93681 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 95781 95781 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold42262 SAMTools SNP 99917 99917 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold42262 SAMTools SNP 114411 114411 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42262 SAMTools SNP 114455 114455 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold42262 SAMTools SNP 115674 115674 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42262 SAMTools SNP 118896 118896 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42262 SAMTools SNP 119091 119091 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C33%2C0:63 scaffold42262 SAMTools SNP 121569 121569 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.045%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42262 SAMTools SNP 122767 122767 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C27%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 122803 122803 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 123048 123048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 123467 123467 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42262 SAMTools SNP 123778 123778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42262 SAMTools SNP 125443 125443 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42262 SAMTools SNP 125455 125455 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42262 SAMTools SNP 125629 125629 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42262 SAMTools SNP 126065 126065 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C215:99 scaffold42262 SAMTools SNP 126149 126149 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C6%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C4.2e-11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42262 SAMTools SNP 126230 126230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42262 SAMTools SNP 126254 126254 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.42%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 126691 126691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42262 SAMTools SNP 127670 127670 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42262 SAMTools SNP 128046 128046 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42262 SAMTools SNP 128357 128357 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42262 SAMTools SNP 128563 128563 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42262 SAMTools SNP 128564 128564 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42262 SAMTools SNP 128609 128609 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C216:99 scaffold42262 SAMTools SNP 128621 128621 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold42262 SAMTools SNP 130148 130148 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42262 SAMTools SNP 130216 130216 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold42262 SAMTools SNP 131061 131061 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42262 SAMTools SNP 131139 131139 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42262 SAMTools SNP 131162 131162 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42262 SAMTools SNP 131407 131407 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42262 SAMTools SNP 131446 131446 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold42262 SAMTools SNP 131821 131821 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42262 SAMTools SNP 132249 132249 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.4e-11%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold42262 SAMTools SNP 132252 132252 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.24%2C1.7e-08%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42262 SAMTools SNP 132528 132528 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42262 SAMTools SNP 132779 132779 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 133327 133327 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C42%2C0:81 scaffold42262 SAMTools SNP 133696 133696 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42262 SAMTools SNP 133849 133849 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.19%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42262 SAMTools SNP 134121 134121 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold42262 SAMTools SNP 134148 134148 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42262 SAMTools SNP 134290 134290 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 135255 135255 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42262 SAMTools SNP 135308 135308 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C15%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.53%2C4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold42262 SAMTools SNP 136421 136421 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 136469 136469 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.54%2C0.23%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold42262 SAMTools SNP 137221 137221 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.35%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42262 SAMTools SNP 137526 137526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42262 SAMTools SNP 137775 137775 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.23%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C121:99 scaffold42262 SAMTools SNP 139506 139506 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 139641 139641 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C16%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D6.2e-08%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42262 SAMTools SNP 139863 139863 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C18%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.004%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold42262 SAMTools SNP 140082 140082 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 140337 140337 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold42262 SAMTools SNP 140377 140377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C24%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold42262 SAMTools SNP 140502 140502 76.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C12%2C0:21 scaffold42262 SAMTools SNP 141368 141368 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C15%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C135%2C0:99 scaffold42262 SAMTools SNP 142027 142027 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C19%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.28%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold42262 SAMTools SNP 142153 142153 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42262 SAMTools SNP 142548 142548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 143124 143124 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42262 SAMTools SNP 143598 143598 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.014%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42262 SAMTools SNP 143625 143625 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D7.3e-06%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold42262 SAMTools SNP 143931 143931 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C9.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C96:52 scaffold42262 SAMTools SNP 144203 144203 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42262 SAMTools SNP 144494 144494 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C4%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 144525 144525 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42262 SAMTools SNP 144630 144630 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42262 SAMTools SNP 144777 144777 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42262 SAMTools SNP 144852 144852 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C27%2C0:51 scaffold42262 SAMTools SNP 144954 144954 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.4%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42262 SAMTools SNP 145364 145364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42262 SAMTools SNP 145597 145597 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42262 SAMTools SNP 145606 145606 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42262 SAMTools SNP 145615 145615 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42262 SAMTools SNP 145741 145741 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C33%2C0:63 scaffold42262 SAMTools SNP 146190 146190 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C28%2C47%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 146638 146638 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C80%2C0%2C53%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42262 SAMTools SNP 146660 146660 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C17%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold42262 SAMTools SNP 147433 147433 157 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C21%2C0:39 scaffold42262 SAMTools SNP 147455 147455 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.38%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold42262 SAMTools SNP 147961 147961 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C17%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42262 SAMTools SNP 148074 148074 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C18%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.048%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold42262 SAMTools SNP 148131 148131 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C29%2C27%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.056%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42262 SAMTools SNP 148326 148326 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C7%2C12%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.41%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42262 SAMTools SNP 148509 148509 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42262 SAMTools SNP 148581 148581 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0095%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42264 SAMTools SNP 761 761 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42264 SAMTools SNP 798 798 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42264 SAMTools SNP 3351 3351 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C22%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.44%2C1.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42264 SAMTools SNP 3465 3465 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42264 SAMTools SNP 3905 3905 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42264 SAMTools SNP 3984 3984 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold42264 SAMTools SNP 5050 5050 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42264 SAMTools SNP 5777 5777 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42264 SAMTools SNP 6783 6783 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42264 SAMTools SNP 7469 7469 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42264 SAMTools SNP 7550 7550 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42264 SAMTools SNP 7988 7988 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C21%2C0:39 scaffold42264 SAMTools SNP 7996 7996 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42264 SAMTools SNP 8267 8267 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42264 SAMTools SNP 8990 8990 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.32%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold42264 SAMTools SNP 11322 11322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42264 SAMTools SNP 12783 12783 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3182%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1631%2C38%2C1498%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C2.8e-20%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42264 SAMTools SNP 12796 12796 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3187%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1501%2C15%2C1632%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.0043%2C0.17%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42264 SAMTools SNP 12952 12952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2357%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2304%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42264 SAMTools SNP 13015 13015 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3102%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42264 SAMTools SNP 13457 13457 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C241:99 scaffold42264 SAMTools SNP 13458 13458 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42264 SAMTools SNP 15829 15829 120 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C57%2C0%2C119%2C10%2C116:99 scaffold42268 SAMTools SNP 195 195 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42268 SAMTools SNP 236 236 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C36%2C0:69 scaffold42268 SAMTools SNP 299 299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold42268 SAMTools SNP 1443 1443 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42268 SAMTools SNP 1520 1520 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.074%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42268 SAMTools SNP 1577 1577 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C11%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00047%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42268 SAMTools SNP 2173 2173 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42268 SAMTools SNP 2185 2185 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C46%2C1%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42268 SAMTools SNP 8741 8741 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.27%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold42268 SAMTools SNP 8843 8843 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C36%2C0:60 scaffold42268 SAMTools SNP 21181 21181 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C14:17 scaffold42268 SAMTools SNP 21196 21196 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42268 SAMTools SNP 21712 21712 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0:33 scaffold42268 SAMTools SNP 22022 22022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42268 SAMTools SNP 22301 22301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42268 SAMTools SNP 22337 22337 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold42268 SAMTools SNP 29485 29485 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42268 SAMTools SNP 31850 31850 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42268 SAMTools SNP 31885 31885 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42268 SAMTools SNP 32539 32539 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42268 SAMTools SNP 32982 32982 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42268 SAMTools SNP 32996 32996 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42268 SAMTools SNP 35095 35095 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42268 SAMTools SNP 40606 40606 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42268 SAMTools SNP 42427 42427 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42268 SAMTools SNP 42474 42474 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42268 SAMTools SNP 42484 42484 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C43:38 scaffold42268 SAMTools SNP 47825 47825 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42268 SAMTools SNP 51106 51106 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42268 SAMTools SNP 51408 51408 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42268 SAMTools SNP 51426 51426 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42268 SAMTools SNP 51810 51810 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42268 SAMTools SNP 57020 57020 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42268 SAMTools SNP 60066 60066 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C84%2C0%3BMQ%3D50%3BFQ%3D-186%3BPV4%3D0.023%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C159%2C0:99 scaffold42268 SAMTools SNP 86518 86518 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold42268 SAMTools SNP 90108 90108 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.025%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold42272 SAMTools SNP 1210 1210 21.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold42272 SAMTools SNP 1225 1225 21.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold42272 SAMTools SNP 6521 6521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 6530 6530 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 7143 7143 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 7317 7317 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42272 SAMTools SNP 7338 7338 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 7745 7745 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold42272 SAMTools SNP 7803 7803 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42272 SAMTools SNP 7817 7817 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42272 SAMTools SNP 15530 15530 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 15834 15834 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42272 SAMTools SNP 15835 15835 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42272 SAMTools SNP 15929 15929 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold42272 SAMTools SNP 15955 15955 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42272 SAMTools SNP 16151 16151 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 16262 16262 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42272 SAMTools SNP 17083 17083 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42272 SAMTools SNP 17440 17440 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 18052 18052 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42272 SAMTools SNP 20780 20780 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42272 SAMTools SNP 23519 23519 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42272 SAMTools SNP 23532 23532 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42272 SAMTools SNP 23966 23966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42272 SAMTools SNP 24024 24024 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42272 SAMTools SNP 24159 24159 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C255%2C0:99 scaffold42272 SAMTools SNP 24243 24243 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C13%2C54%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 24710 24710 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42272 SAMTools SNP 24773 24773 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42272 SAMTools SNP 25820 25820 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold42272 SAMTools SNP 28579 28579 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42272 SAMTools SNP 29683 29683 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42272 SAMTools SNP 29926 29926 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold42272 SAMTools SNP 32730 32730 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42272 SAMTools SNP 32731 32731 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42272 SAMTools SNP 34004 34004 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C5.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold42272 SAMTools SNP 34285 34285 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42272 SAMTools SNP 34331 34331 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold42272 SAMTools SNP 35265 35265 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 35285 35285 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 35789 35789 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold42272 SAMTools SNP 35830 35830 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42272 SAMTools SNP 35848 35848 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42272 SAMTools SNP 37173 37173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C55%2C3%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 38692 38692 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.27%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42272 SAMTools SNP 38775 38775 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C213:99 scaffold42272 SAMTools SNP 38842 38842 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold42272 SAMTools SNP 42020 42020 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42272 SAMTools SNP 42029 42029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42272 SAMTools SNP 43317 43317 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 44917 44917 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 44976 44976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42272 SAMTools SNP 45039 45039 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C34%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42272 SAMTools SNP 45392 45392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 45437 45437 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C30%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42272 SAMTools SNP 45491 45491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 45755 45755 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42272 SAMTools SNP 45875 45875 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42272 SAMTools SNP 45911 45911 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42272 SAMTools SNP 47712 47712 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42272 SAMTools SNP 47752 47752 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42272 SAMTools SNP 52653 52653 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.68%2C0.021%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42272 SAMTools SNP 53150 53150 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C47%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.4%2C7.5e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42272 SAMTools SNP 97491 97491 3.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold42272 SAMTools SNP 99533 99533 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42272 SAMTools SNP 101757 101757 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.56%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42272 SAMTools SNP 102805 102805 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.038%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42272 SAMTools SNP 103416 103416 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold42272 SAMTools SNP 103429 103429 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.48%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42272 SAMTools SNP 103437 103437 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold42272 SAMTools SNP 104157 104157 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 105490 105490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42272 SAMTools SNP 105536 105536 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42272 SAMTools SNP 108272 108272 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C113%2C28%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 108442 108442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C26%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 108457 108457 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C25%2C79%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.088%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 108650 108650 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42272 SAMTools SNP 109184 109184 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C18%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.32%2C6.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42272 SAMTools SNP 109256 109256 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 110634 110634 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C45%2C50%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 111934 111934 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42272 SAMTools SNP 111957 111957 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C5%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42272 SAMTools SNP 112196 112196 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D210%3BPV4%3D8.2e-06%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold42272 SAMTools SNP 112223 112223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C19%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42272 SAMTools SNP 112558 112558 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 112636 112636 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.51%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C169:99 scaffold42272 SAMTools SNP 114527 114527 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42272 SAMTools SNP 114593 114593 66.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold42272 SAMTools SNP 114614 114614 51.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold42272 SAMTools SNP 114686 114686 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C107%2C64%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 117454 117454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C75%3BMQ%3D50%3BFQ%3D-241%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold42272 SAMTools SNP 117836 117836 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C32%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold42272 SAMTools SNP 117839 117839 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C13%2C7%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.67%2C3.1e-12%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42272 SAMTools SNP 117851 117851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C17%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42272 SAMTools SNP 118464 118464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42272 SAMTools SNP 118482 118482 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C76%2C18%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D4.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42272 SAMTools SNP 118506 118506 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D306%2C6%2C176%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42272 SAMTools SNP 119432 119432 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C74:77 scaffold42272 SAMTools SNP 122799 122799 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold42272 SAMTools SNP 124655 124655 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C208:99 scaffold42272 SAMTools SNP 124741 124741 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C7%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.31%2C4.9e-12%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42272 SAMTools SNP 124813 124813 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold42272 SAMTools SNP 124825 124825 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold42272 SAMTools SNP 125274 125274 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42272 SAMTools SNP 126084 126084 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42272 SAMTools SNP 126269 126269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42272 SAMTools SNP 126647 126647 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42272 SAMTools SNP 127137 127137 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42272 SAMTools SNP 130138 130138 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.5%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C202:99 scaffold42272 SAMTools SNP 130429 130429 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42272 SAMTools SNP 130433 130433 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42272 SAMTools SNP 130458 130458 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42272 SAMTools SNP 130789 130789 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42272 SAMTools SNP 130889 130889 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42272 SAMTools SNP 131135 131135 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42272 SAMTools SNP 131153 131153 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42272 SAMTools SNP 131469 131469 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42272 SAMTools SNP 134577 134577 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold42272 SAMTools SNP 134607 134607 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.31%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold42272 SAMTools SNP 139071 139071 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold42272 SAMTools SNP 154839 154839 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D44%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42272 SAMTools SNP 154902 154902 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42274 SAMTools SNP 1277 1277 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42274 SAMTools SNP 1787 1787 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42274 SAMTools SNP 6671 6671 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42274 SAMTools SNP 8618 8618 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C14%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.6e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C244:33 scaffold42274 SAMTools SNP 8644 8644 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42274 SAMTools SNP 8650 8650 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.00095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold42274 SAMTools SNP 10948 10948 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42274 SAMTools SNP 10990 10990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42274 SAMTools SNP 11501 11501 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold42274 SAMTools SNP 11603 11603 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42274 SAMTools SNP 11971 11971 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C248:60 scaffold42274 SAMTools SNP 12546 12546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42274 SAMTools SNP 17047 17047 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C88%2C140%2C77%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.49%2C2.2e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42274 SAMTools SNP 17991 17991 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C120%2C50%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42274 SAMTools SNP 18091 18091 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C104%2C7%2C23%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.82%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42274 SAMTools SNP 18097 18097 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C105%2C5%2C24%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.63%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold42274 SAMTools SNP 19191 19191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C34%2C59%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42274 SAMTools SNP 20685 20685 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42274 SAMTools SNP 20735 20735 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.049%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42274 SAMTools SNP 20746 20746 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold42274 SAMTools SNP 21029 21029 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C241:99 scaffold42274 SAMTools SNP 21083 21083 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42274 SAMTools SNP 21316 21316 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42274 SAMTools SNP 21343 21343 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold42274 SAMTools SNP 21678 21678 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D35%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00057%2C0.19%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42274 SAMTools SNP 22207 22207 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42274 SAMTools SNP 22240 22240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42274 SAMTools SNP 22602 22602 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C22%3BMQ%3D50%3BFQ%3D217%3BPV4%3D6.1e-05%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42274 SAMTools SNP 22851 22851 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.24%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42274 SAMTools SNP 23123 23123 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.093%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42274 SAMTools SNP 23142 23142 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42274 SAMTools SNP 23478 23478 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.5%2C6.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42274 SAMTools SNP 23486 23486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42274 SAMTools SNP 23540 23540 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42274 SAMTools SNP 23754 23754 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.00051%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42274 SAMTools SNP 23810 23810 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42274 SAMTools SNP 24312 24312 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C31%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D2.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold42274 SAMTools SNP 24321 24321 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0035%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42274 SAMTools SNP 24399 24399 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C29%2C15%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42274 SAMTools SNP 24695 24695 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C14%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.00068%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold42274 SAMTools SNP 24738 24738 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C9%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.32%2C1%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42274 SAMTools SNP 26538 26538 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42274 SAMTools SNP 26588 26588 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42274 SAMTools SNP 28417 28417 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C6%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.028%2C0.13%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold42274 SAMTools SNP 28426 28426 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42274 SAMTools SNP 28472 28472 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C51%2C0:99 scaffold42274 SAMTools SNP 30578 30578 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold42274 SAMTools SNP 58758 58758 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42274 SAMTools SNP 58769 58769 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42274 SAMTools SNP 59553 59553 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42274 SAMTools SNP 70540 70540 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42274 SAMTools SNP 70620 70620 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42274 SAMTools SNP 71692 71692 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42274 SAMTools SNP 86110 86110 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42274 SAMTools SNP 118515 118515 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42274 SAMTools SNP 118521 118521 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42274 SAMTools SNP 118535 118535 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.14%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42274 SAMTools SNP 119510 119510 9.08 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold42274 SAMTools SNP 123334 123334 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42274 SAMTools SNP 123382 123382 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C26%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.022%2C1%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42274 SAMTools SNP 123405 123405 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.5%2C0.00087%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42274 SAMTools SNP 123854 123854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.2%2C0.41%2C1%2C2.6e-41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold42274 SAMTools SNP 123864 123864 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42274 SAMTools SNP 123981 123981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C46%2C18%3BMQ%3D50%3BFQ%3D134%3BPV4%3D3.5e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold42274 SAMTools SNP 125036 125036 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42274 SAMTools SNP 134881 134881 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C25%2C27%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.56%2C4.3e-53%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42274 SAMTools SNP 134957 134957 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C18%2C9%2C23%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.003%2C7e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold42302 SAMTools SNP 3950 3950 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 4960 4960 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42302 SAMTools SNP 5100 5100 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42302 SAMTools SNP 9899 9899 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42302 SAMTools SNP 11761 11761 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42302 SAMTools SNP 12278 12278 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 12352 12352 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42302 SAMTools SNP 12356 12356 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42302 SAMTools SNP 26001 26001 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C8%3BMQ%3D47%3BFQ%3D148%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold42302 SAMTools SNP 26034 26034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 27530 27530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42302 SAMTools SNP 27663 27663 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 27772 27772 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42302 SAMTools SNP 34450 34450 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold42302 SAMTools SNP 34630 34630 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42302 SAMTools SNP 35912 35912 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.6%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42302 SAMTools SNP 37098 37098 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42302 SAMTools SNP 37133 37133 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.014%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42302 SAMTools SNP 37615 37615 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 40453 40453 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 40485 40485 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42302 SAMTools SNP 44431 44431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42302 SAMTools SNP 44554 44554 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold42302 SAMTools SNP 44614 44614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42302 SAMTools SNP 44851 44851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 44857 44857 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C6%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 44929 44929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C10%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42302 SAMTools SNP 45043 45043 26.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold42302 SAMTools SNP 45427 45427 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42302 SAMTools SNP 46378 46378 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0028%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 46384 46384 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 46537 46537 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42302 SAMTools SNP 48984 48984 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C242:99 scaffold42302 SAMTools SNP 51558 51558 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold42302 SAMTools SNP 51567 51567 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C42%2C0:81 scaffold42302 SAMTools SNP 51679 51679 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42302 SAMTools SNP 52210 52210 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42302 SAMTools SNP 53236 53236 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0073%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42302 SAMTools SNP 53261 53261 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42302 SAMTools SNP 59938 59938 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42302 SAMTools SNP 60185 60185 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 62569 62569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C43%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.44%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 62602 62602 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C14%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 63036 63036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C30%2C95%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 63780 63780 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C15%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C3.1e-07%2C1%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42302 SAMTools SNP 63810 63810 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C4%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.67%2C0.055%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42302 SAMTools SNP 63977 63977 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C19%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D2.8e-08%2C4.4e-21%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42302 SAMTools SNP 65186 65186 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42302 SAMTools SNP 66100 66100 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42302 SAMTools SNP 66265 66265 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C48%2C0:93 scaffold42302 SAMTools SNP 66373 66373 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C33%2C0:63 scaffold42302 SAMTools SNP 74406 74406 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.64%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42302 SAMTools SNP 83453 83453 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 85669 85669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.063%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 85681 85681 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 85885 85885 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42302 SAMTools SNP 85909 85909 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C10%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold42302 SAMTools SNP 87585 87585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C58%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.15%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 87612 87612 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D3e-05%2C1%2C1%2C2.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold42302 SAMTools SNP 87690 87690 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42302 SAMTools SNP 88699 88699 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C21%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 89150 89150 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 89207 89207 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C0%2C15%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0015%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold42302 SAMTools SNP 89303 89303 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42302 SAMTools SNP 89665 89665 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.53%2C0.05%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42302 SAMTools SNP 89721 89721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.033%2C0.3%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold42302 SAMTools SNP 90273 90273 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C10%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C9.2e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42302 SAMTools SNP 90501 90501 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42302 SAMTools SNP 91537 91537 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C17%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C8.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C169:59 scaffold42302 SAMTools SNP 92197 92197 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42302 SAMTools SNP 92644 92644 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C87:31 scaffold42302 SAMTools SNP 94929 94929 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C2.1e-11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 95687 95687 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42302 SAMTools SNP 96316 96316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42302 SAMTools SNP 98163 98163 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42302 SAMTools SNP 100741 100741 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0014%2C2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C210:90 scaffold42302 SAMTools SNP 101174 101174 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C38%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42302 SAMTools SNP 103413 103413 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D3.2e-05%2C0.00017%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42302 SAMTools SNP 124748 124748 28.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold42302 SAMTools SNP 130632 130632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C77%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42302 SAMTools SNP 139644 139644 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42302 SAMTools SNP 139745 139745 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42302 SAMTools SNP 140300 140300 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42302 SAMTools SNP 140463 140463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42302 SAMTools SNP 140466 140466 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold42302 SAMTools SNP 140892 140892 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42302 SAMTools SNP 141060 141060 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42302 SAMTools SNP 141090 141090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42302 SAMTools SNP 141141 141141 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42302 SAMTools SNP 141251 141251 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold42302 SAMTools SNP 141360 141360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42302 SAMTools SNP 141636 141636 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42302 SAMTools SNP 141666 141666 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C242:99 scaffold42302 SAMTools SNP 142228 142228 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42302 SAMTools SNP 142658 142658 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 142660 142660 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 142940 142940 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42302 SAMTools SNP 142969 142969 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42302 SAMTools SNP 143305 143305 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42302 SAMTools SNP 143839 143839 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 143860 143860 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42302 SAMTools SNP 143899 143899 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42302 SAMTools SNP 143926 143926 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42302 SAMTools SNP 144116 144116 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.16%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C93:96 scaffold42302 SAMTools SNP 144160 144160 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42302 SAMTools SNP 144196 144196 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42302 SAMTools SNP 144826 144826 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42302 SAMTools SNP 144844 144844 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42302 SAMTools SNP 144859 144859 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42302 SAMTools SNP 144865 144865 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42302 SAMTools SNP 145593 145593 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold42302 SAMTools SNP 145637 145637 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D62.8%3BPV4%3D0.49%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C96:93 scaffold42302 SAMTools SNP 145694 145694 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.9e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C99:51 scaffold42302 SAMTools SNP 145718 145718 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42302 SAMTools SNP 145743 145743 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42302 SAMTools SNP 146141 146141 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C110:66 scaffold42302 SAMTools SNP 146508 146508 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold42302 SAMTools SNP 146517 146517 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42302 SAMTools SNP 146854 146854 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C22%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.46%2C2.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42302 SAMTools SNP 147086 147086 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C39%2C0:75 scaffold42306 SAMTools SNP 41152 41152 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42306 SAMTools SNP 57891 57891 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42306 SAMTools SNP 61923 61923 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42306 SAMTools SNP 62554 62554 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42306 SAMTools SNP 64338 64338 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.59%2C0.02%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42306 SAMTools SNP 64417 64417 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C8.6e-18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42306 SAMTools SNP 80177 80177 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold42306 SAMTools SNP 80249 80249 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold42306 SAMTools SNP 80334 80334 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold42306 SAMTools SNP 80427 80427 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42306 SAMTools SNP 82162 82162 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold42306 SAMTools SNP 82177 82177 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold42306 SAMTools SNP 82342 82342 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42306 SAMTools SNP 82361 82361 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42306 SAMTools SNP 82538 82538 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42306 SAMTools SNP 91389 91389 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42306 SAMTools SNP 91491 91491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C23%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42306 SAMTools SNP 91510 91510 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold42306 SAMTools SNP 91540 91540 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C64%2C0%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42306 SAMTools SNP 93243 93243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C6%2C25%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.071%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold42306 SAMTools SNP 94204 94204 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C5%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.67%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold42306 SAMTools SNP 96547 96547 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C11%2C31%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.17%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold42306 SAMTools SNP 97330 97330 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C52%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42306 SAMTools SNP 97403 97403 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C67%2C47%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42306 SAMTools SNP 101086 101086 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.29%2C1%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42306 SAMTools SNP 106700 106700 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42306 SAMTools SNP 106763 106763 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold42306 SAMTools SNP 130282 130282 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42306 SAMTools SNP 130290 130290 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42306 SAMTools SNP 134398 134398 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.14%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C210:91 scaffold42326 SAMTools SNP 37902 37902 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42326 SAMTools SNP 39368 39368 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C48%2C0:93 scaffold42326 SAMTools SNP 46180 46180 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.06%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42326 SAMTools SNP 46908 46908 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C37%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold42326 SAMTools SNP 46941 46941 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42326 SAMTools SNP 47088 47088 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42326 SAMTools SNP 51886 51886 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42326 SAMTools SNP 52618 52618 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42326 SAMTools SNP 52657 52657 55.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold42326 SAMTools SNP 53630 53630 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42326 SAMTools SNP 55381 55381 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42326 SAMTools SNP 55422 55422 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42326 SAMTools SNP 60263 60263 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42326 SAMTools SNP 66222 66222 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C18%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C138%2C0:99 scaffold42326 SAMTools SNP 66369 66369 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C9%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42326 SAMTools SNP 67268 67268 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C0%2C23%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold42326 SAMTools SNP 69021 69021 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C12%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C245:99 scaffold42326 SAMTools SNP 69069 69069 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42326 SAMTools SNP 89323 89323 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42326 SAMTools SNP 90661 90661 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42326 SAMTools SNP 92027 92027 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42326 SAMTools SNP 92169 92169 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42326 SAMTools SNP 112103 112103 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42326 SAMTools SNP 141735 141735 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42328 SAMTools SNP 123 123 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42328 SAMTools SNP 588 588 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C45%2C0:87 scaffold42328 SAMTools SNP 1026 1026 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.61%2C0.00081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42328 SAMTools SNP 1179 1179 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42328 SAMTools SNP 1209 1209 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.22%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold42328 SAMTools SNP 1923 1923 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42328 SAMTools SNP 1938 1938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42328 SAMTools SNP 2662 2662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42328 SAMTools SNP 2689 2689 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C42%2C32%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 2974 2974 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C36%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 2992 2992 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.4%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 3001 3001 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 3564 3564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C23%2C15%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 3601 3601 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C13%2C0%3BMQ%3D43%3BFQ%3D144%3BPV4%3D0.044%2C0.056%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42328 SAMTools SNP 3634 3634 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C0%2C16%3BMQ%3D36%3BFQ%3D131%3BPV4%3D0.045%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold42328 SAMTools SNP 3652 3652 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C0%2C20%3BMQ%3D39%3BFQ%3D153%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42328 SAMTools SNP 5486 5486 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.05%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42328 SAMTools SNP 15300 15300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42328 SAMTools SNP 15305 15305 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold42328 SAMTools SNP 15376 15376 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold42328 SAMTools SNP 15378 15378 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold42328 SAMTools SNP 29517 29517 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C155:99 scaffold42328 SAMTools SNP 29691 29691 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.61%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42328 SAMTools SNP 29727 29727 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.33%2C0.014%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42328 SAMTools SNP 29730 29730 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C21%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.031%2C0.0021%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42328 SAMTools SNP 31232 31232 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42328 SAMTools SNP 31877 31877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C3%2C46%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.27%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold42328 SAMTools SNP 31914 31914 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 38797 38797 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold42328 SAMTools SNP 39256 39256 29.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold42328 SAMTools SNP 39676 39676 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42328 SAMTools SNP 40332 40332 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold42328 SAMTools SNP 42360 42360 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 42426 42426 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C19:22 scaffold42328 SAMTools SNP 42773 42773 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42328 SAMTools SNP 43181 43181 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 43187 43187 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 44389 44389 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 44593 44593 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 45596 45596 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42328 SAMTools SNP 45602 45602 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42328 SAMTools SNP 52464 52464 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C69%2C0:99 scaffold42328 SAMTools SNP 54565 54565 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42328 SAMTools SNP 55503 55503 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42328 SAMTools SNP 55674 55674 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 56344 56344 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 56350 56350 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 76447 76447 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold42328 SAMTools SNP 76468 76468 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold42328 SAMTools SNP 84870 84870 113 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C238:99 scaffold42328 SAMTools SNP 84873 84873 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C239:99 scaffold42328 SAMTools SNP 94499 94499 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C0%3BMQ%3D49%3BFQ%3D164%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C244:99 scaffold42328 SAMTools SNP 94567 94567 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C11%3BMQ%3D49%3BFQ%3D71%3BPV4%3D1%2C2.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42328 SAMTools SNP 94865 94865 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C1%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.0025%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C254:99 scaffold42328 SAMTools SNP 94880 94880 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C251:99 scaffold42328 SAMTools SNP 94912 94912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42328 SAMTools SNP 95000 95000 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42328 SAMTools SNP 95290 95290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42328 SAMTools SNP 95329 95329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42328 SAMTools SNP 96139 96139 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.2%2C3.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42328 SAMTools SNP 96205 96205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42328 SAMTools SNP 98302 98302 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42328 SAMTools SNP 98968 98968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42328 SAMTools SNP 99501 99501 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C252:99 scaffold42328 SAMTools SNP 99529 99529 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 100295 100295 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42328 SAMTools SNP 100355 100355 54.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold42328 SAMTools SNP 101563 101563 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D30%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C57%2C0:99 scaffold42328 SAMTools SNP 101566 101566 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D27%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C51%2C0:99 scaffold42328 SAMTools SNP 102178 102178 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C7%3BMQ%3D45%3BFQ%3D132%3BPV4%3D0.011%2C1%2C0.078%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C159:99 scaffold42328 SAMTools SNP 103823 103823 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42328 SAMTools SNP 104216 104216 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C232:73 scaffold42328 SAMTools SNP 106373 106373 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C15:18 scaffold42328 SAMTools SNP 106376 106376 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C37:35 scaffold42328 SAMTools SNP 107980 107980 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D25%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C29:32 scaffold42328 SAMTools SNP 108920 108920 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C42%2C0:81 scaffold42328 SAMTools SNP 109501 109501 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C0%2C21%3BMQ%3D50%3BFQ%3D23%3BPV4%3D5.3e-05%2C4.3e-18%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42328 SAMTools SNP 109704 109704 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C8%2C11%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.74%2C1.9e-19%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42328 SAMTools SNP 109848 109848 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C11%2C13%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42328 SAMTools SNP 109877 109877 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C13%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C196%2C0:99 scaffold42328 SAMTools SNP 110067 110067 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C27%2C16%2C21%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.15%2C6.5e-09%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42328 SAMTools SNP 112517 112517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C50%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold42328 SAMTools SNP 112553 112553 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C32%2C13%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 114048 114048 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold42328 SAMTools SNP 114225 114225 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C28%2C11%3BMQ%3D45%3BFQ%3D32%3BPV4%3D0.016%2C3.8e-48%2C0.38%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42328 SAMTools SNP 114246 114246 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.15%2C1.2e-07%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C206:89 scaffold42328 SAMTools SNP 115402 115402 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42328 SAMTools SNP 126267 126267 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42328 SAMTools SNP 131153 131153 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C75%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1.4e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold42328 SAMTools SNP 131359 131359 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42328 SAMTools SNP 137027 137027 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 137054 137054 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C195:99 scaffold42328 SAMTools SNP 137339 137339 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.2%2C0.0043%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C215:97 scaffold42328 SAMTools SNP 137680 137680 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0014%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C192:28 scaffold42328 SAMTools SNP 137684 137684 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C18%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.38%2C7.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C171:78 scaffold42328 SAMTools SNP 137792 137792 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C226:37 scaffold42328 SAMTools SNP 137844 137844 31.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold42328 SAMTools SNP 138854 138854 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.019%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42328 SAMTools SNP 141125 141125 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42328 SAMTools SNP 141219 141219 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C9.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C124:94 scaffold42328 SAMTools SNP 141834 141834 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold42328 SAMTools SNP 141848 141848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42328 SAMTools SNP 142272 142272 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42328 SAMTools SNP 142287 142287 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.15%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold42328 SAMTools SNP 143157 143157 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42328 SAMTools SNP 143187 143187 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42328 SAMTools SNP 144309 144309 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.54%2C0.038%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42328 SAMTools SNP 145609 145609 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42328 SAMTools SNP 145754 145754 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C127:54 scaffold42328 SAMTools SNP 145978 145978 81.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C12%2C0:21 scaffold42328 SAMTools SNP 146807 146807 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C57%2C0:99 scaffold42328 SAMTools SNP 147343 147343 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C42%2C0:81 scaffold42328 SAMTools SNP 147413 147413 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold42348 SAMTools SNP 17320 17320 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42348 SAMTools SNP 75398 75398 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42348 SAMTools SNP 75843 75843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42348 SAMTools SNP 76447 76447 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C113:99 scaffold42348 SAMTools SNP 76473 76473 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42348 SAMTools SNP 76597 76597 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42348 SAMTools SNP 76630 76630 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C17%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0084%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold42348 SAMTools SNP 76700 76700 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42348 SAMTools SNP 77013 77013 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42348 SAMTools SNP 77016 77016 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42348 SAMTools SNP 77260 77260 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42348 SAMTools SNP 77282 77282 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold42348 SAMTools SNP 78478 78478 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C30%2C0:57 scaffold42348 SAMTools SNP 81989 81989 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42348 SAMTools SNP 82177 82177 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42348 SAMTools SNP 99174 99174 8.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold42348 SAMTools SNP 116049 116049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42348 SAMTools SNP 116127 116127 17.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold42348 SAMTools SNP 116219 116219 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42348 SAMTools SNP 120766 120766 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5038%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2831%2C8%2C2180%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 120784 120784 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5460%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C5%2C5398%2C40%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D6.4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42348 SAMTools SNP 121960 121960 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6134%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C3%2C57%2C218%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.042%2C1%2C0.44%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42348 SAMTools SNP 121999 121999 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4563%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C64%2C1238%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.43%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42348 SAMTools SNP 122153 122153 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2149%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C982%2C147%2C845%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C0.049%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 122219 122219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D921%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C277%2C149%2C303%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 122773 122773 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D915%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D256%2C390%2C23%2C244%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-23%2C1%2C1%2C9.5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 122788 122788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2954%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2512%2C195%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42348 SAMTools SNP 122809 122809 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3355%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2193%2C74%2C1076%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D7.1e-06%2C1%2C1%2C8.4e-116;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42348 SAMTools SNP 123074 123074 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3974%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D698%2C1697%2C866%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-233%2C1%2C1%2C2.2e-152;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 123101 123101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5068%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D800%2C2231%2C545%2C880%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-15%2C1%2C1%2C1.5e-100;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 124058 124058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1659%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C795%2C17%2C351%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 124571 124571 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5557%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1195%2C1127%2C979%2C1715%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-27%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 124694 124694 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2297%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42348 SAMTools SNP 125045 125045 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D960%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C652%2C0%2C308%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold42348 SAMTools SNP 127390 127390 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42348 SAMTools SNP 127428 127428 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.084%2C0.0015%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold42348 SAMTools SNP 127681 127681 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C123:99 scaffold42348 SAMTools SNP 127712 127712 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42348 SAMTools SNP 128140 128140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42348 SAMTools SNP 128435 128435 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C162:99 scaffold42348 SAMTools SNP 128451 128451 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42348 SAMTools SNP 128453 128453 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.24%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C194:34 scaffold42348 SAMTools SNP 128564 128564 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold42348 SAMTools SNP 128612 128612 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42348 SAMTools SNP 129894 129894 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.0057%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C243:99 scaffold42348 SAMTools SNP 130421 130421 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42348 SAMTools SNP 131273 131273 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold42348 SAMTools SNP 131294 131294 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold42348 SAMTools SNP 131772 131772 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.22%2C0.00051%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42348 SAMTools SNP 132958 132958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold42348 SAMTools SNP 133009 133009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold42348 SAMTools SNP 133063 133063 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42348 SAMTools SNP 133531 133531 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.12%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold42348 SAMTools SNP 133576 133576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42348 SAMTools SNP 134117 134117 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42348 SAMTools SNP 134198 134198 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42348 SAMTools SNP 134217 134217 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42348 SAMTools SNP 154396 154396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 6140 6140 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42364 SAMTools SNP 29941 29941 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D30%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C42%2C0:76 scaffold42364 SAMTools SNP 35585 35585 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 37945 37945 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C18%2C0:33 scaffold42364 SAMTools SNP 38722 38722 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 42068 42068 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42364 SAMTools SNP 42807 42807 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold42364 SAMTools SNP 43043 43043 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold42364 SAMTools SNP 43689 43689 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.24%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold42364 SAMTools SNP 43695 43695 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C1%2C4%3BMQ%3D49%3BFQ%3D59%3BPV4%3D1%2C0.4%2C0.015%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42364 SAMTools SNP 44656 44656 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.59%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42364 SAMTools SNP 44940 44940 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold42364 SAMTools SNP 45417 45417 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.11%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42364 SAMTools SNP 45607 45607 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold42364 SAMTools SNP 47542 47542 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D43%2C6%2C23%2C0%3BMQ%3D24%3BFQ%3D-24%3BPV4%3D0.17%2C5.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C3:6 scaffold42364 SAMTools SNP 48162 48162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C20%2C17%3BMQ%3D33%3BFQ%3D148%3BPV4%3D0.0041%2C0.47%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold42364 SAMTools SNP 48192 48192 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C28%2C41%3BMQ%3D36%3BFQ%3D181%3BPV4%3D0.68%2C0.064%2C8e-06%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold42364 SAMTools SNP 48216 48216 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C8%2C29%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 48225 48225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C26%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D4.7e-06%2C0.00031%2C0.027%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 49341 49341 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C7%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 49443 49443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.32%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 49800 49800 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C37%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 50576 50576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C29%2C27%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 50609 50609 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C51%3BMQ%3D46%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold42364 SAMTools SNP 50621 50621 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C6%2C16%3BMQ%3D44%3BFQ%3D190%3BPV4%3D0.43%2C0.25%2C0.085%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold42364 SAMTools SNP 51072 51072 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C18%3BMQ%3D39%3BFQ%3D147%3BPV4%3D0.00034%2C8.1e-07%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold42364 SAMTools SNP 51081 51081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D43%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42364 SAMTools SNP 51380 51380 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C2%3BMQ%3D42%3BFQ%3D106%3BPV4%3D0.36%2C1%2C0.39%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42364 SAMTools SNP 51383 51383 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C8%3BMQ%3D42%3BFQ%3D108%3BPV4%3D0.63%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold42364 SAMTools SNP 51812 51812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D40%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42364 SAMTools SNP 51839 51839 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C3%3BMQ%3D42%3BFQ%3D47%3BPV4%3D0.35%2C0.14%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42364 SAMTools SNP 53705 53705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42364 SAMTools SNP 53765 53765 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42364 SAMTools SNP 54127 54127 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C18%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D2.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold42364 SAMTools SNP 54173 54173 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.077%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold42364 SAMTools SNP 54198 54198 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C4.6e-07%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42364 SAMTools SNP 54233 54233 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.12%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold42364 SAMTools SNP 54239 54239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42364 SAMTools SNP 54599 54599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C32%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 54662 54662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 55582 55582 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42364 SAMTools SNP 55603 55603 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42364 SAMTools SNP 55642 55642 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42364 SAMTools SNP 55943 55943 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42364 SAMTools SNP 55970 55970 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42364 SAMTools SNP 56086 56086 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42364 SAMTools SNP 56165 56165 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42364 SAMTools SNP 56177 56177 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C21%2C0:39 scaffold42364 SAMTools SNP 56569 56569 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 57650 57650 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.01%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42364 SAMTools SNP 58364 58364 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42364 SAMTools SNP 58466 58466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42364 SAMTools SNP 58505 58505 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C45%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 59146 59146 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C11%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 60405 60405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C12%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42364 SAMTools SNP 60854 60854 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42364 SAMTools SNP 60956 60956 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold42364 SAMTools SNP 60959 60959 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold42364 SAMTools SNP 61425 61425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C13%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.6%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold42364 SAMTools SNP 61440 61440 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.063%2C1%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42364 SAMTools SNP 61467 61467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.017%2C0.028%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold42364 SAMTools SNP 61503 61503 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42364 SAMTools SNP 61893 61893 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C15%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 62345 62345 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C15%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 63370 63370 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C12%2C41%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42364 SAMTools SNP 63388 63388 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C14%2C37%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold42364 SAMTools SNP 63475 63475 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C149%2C0%2C40%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C240:79 scaffold42364 SAMTools SNP 63674 63674 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42364 SAMTools SNP 63707 63707 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C60%2C0:99 scaffold42364 SAMTools SNP 63767 63767 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42364 SAMTools SNP 64137 64137 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C8%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0011%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42364 SAMTools SNP 64623 64623 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C88%2C10%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 64631 64631 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C86%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 72018 72018 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42364 SAMTools SNP 72564 72564 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42364 SAMTools SNP 79891 79891 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C0.16%2C0.14%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C127:41 scaffold42364 SAMTools SNP 79900 79900 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold42364 SAMTools SNP 81153 81153 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 82695 82695 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C76:56 scaffold42364 SAMTools SNP 82697 82697 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C98:28 scaffold42364 SAMTools SNP 82782 82782 51.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold42364 SAMTools SNP 84492 84492 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42364 SAMTools SNP 84555 84555 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold42364 SAMTools SNP 91082 91082 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 91099 91099 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42364 SAMTools SNP 92069 92069 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42364 SAMTools SNP 102589 102589 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold42364 SAMTools SNP 125634 125634 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42364 SAMTools SNP 125667 125667 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold42364 SAMTools SNP 125710 125710 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42364 SAMTools SNP 128296 128296 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 129452 129452 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.62%2C5e-12%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C213:75 scaffold42364 SAMTools SNP 129488 129488 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C5.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold42364 SAMTools SNP 130579 130579 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.42%2C1.9e-19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C221:79 scaffold42364 SAMTools SNP 131290 131290 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C42%2C0:81 scaffold42364 SAMTools SNP 133733 133733 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C66%2C0:99 scaffold42364 SAMTools SNP 133771 133771 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C42%2C0:76 scaffold42364 SAMTools SNP 134121 134121 71.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C15%2C0:27 scaffold42364 SAMTools SNP 135012 135012 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C39%2C0%2C17%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold42364 SAMTools SNP 135030 135030 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold42364 SAMTools SNP 135892 135892 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42364 SAMTools SNP 135919 135919 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 136588 136588 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 136592 136592 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 137601 137601 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42364 SAMTools SNP 138353 138353 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-68;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C214:46 scaffold42364 SAMTools SNP 138407 138407 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold42364 SAMTools SNP 139262 139262 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42364 SAMTools SNP 140206 140206 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 140209 140209 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42364 SAMTools SNP 140816 140816 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C9%2C4%3BMQ%3D35%3BFQ%3D168%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C198:99 scaffold42364 SAMTools SNP 142617 142617 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42364 SAMTools SNP 143533 143533 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42364 SAMTools SNP 147343 147343 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.034%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42364 SAMTools SNP 148172 148172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42364 SAMTools SNP 148384 148384 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D30.9%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C60:61 scaffold42364 SAMTools SNP 148632 148632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42364 SAMTools SNP 148697 148697 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C15%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42366 SAMTools SNP 15976 15976 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold42366 SAMTools SNP 16009 16009 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42366 SAMTools SNP 16133 16133 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42366 SAMTools SNP 30754 30754 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42366 SAMTools SNP 54072 54072 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42366 SAMTools SNP 56041 56041 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42366 SAMTools SNP 56043 56043 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42366 SAMTools SNP 61150 61150 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42366 SAMTools SNP 71405 71405 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.27%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold42366 SAMTools SNP 72917 72917 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.47%2C1.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C228:78 scaffold42366 SAMTools SNP 73064 73064 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C36%2C0:69 scaffold42366 SAMTools SNP 73127 73127 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C27%2C0:51 scaffold42366 SAMTools SNP 73274 73274 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold42366 SAMTools SNP 73319 73319 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 73334 73334 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold42366 SAMTools SNP 73343 73343 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold42366 SAMTools SNP 74421 74421 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C214:99 scaffold42366 SAMTools SNP 74693 74693 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42366 SAMTools SNP 74815 74815 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C132:42 scaffold42366 SAMTools SNP 74926 74926 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.41%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C202:99 scaffold42366 SAMTools SNP 74934 74934 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.41%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C206:99 scaffold42366 SAMTools SNP 76110 76110 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C3.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C223:48 scaffold42366 SAMTools SNP 89220 89220 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.041%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C191:99 scaffold42366 SAMTools SNP 89225 89225 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold42366 SAMTools SNP 93910 93910 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42366 SAMTools SNP 94024 94024 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42366 SAMTools SNP 94038 94038 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold42366 SAMTools SNP 94196 94196 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42366 SAMTools SNP 95213 95213 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold42366 SAMTools SNP 95362 95362 65.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold42366 SAMTools SNP 95508 95508 20.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42366 SAMTools SNP 100970 100970 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D43%3BFQ%3D15%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C42:45 scaffold42366 SAMTools SNP 101531 101531 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C143:36 scaffold42366 SAMTools SNP 101553 101553 33.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold42366 SAMTools SNP 101616 101616 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42366 SAMTools SNP 102111 102111 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 116408 116408 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42366 SAMTools SNP 116894 116894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 117400 117400 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold42366 SAMTools SNP 118271 118271 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1.1e-16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C245:99 scaffold42366 SAMTools SNP 119911 119911 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42366 SAMTools SNP 122444 122444 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 122452 122452 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 122847 122847 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42366 SAMTools SNP 123843 123843 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C6:9 scaffold42366 SAMTools SNP 127379 127379 47.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold42366 SAMTools SNP 128215 128215 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42366 SAMTools SNP 128224 128224 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42366 SAMTools SNP 128723 128723 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42366 SAMTools SNP 128729 128729 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42366 SAMTools SNP 130067 130067 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold42366 SAMTools SNP 130068 130068 61.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C10:13 scaffold42366 SAMTools SNP 130329 130329 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold42366 SAMTools SNP 130380 130380 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42366 SAMTools SNP 132262 132262 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 132798 132798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 132808 132808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 134037 134037 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold42366 SAMTools SNP 134097 134097 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42366 SAMTools SNP 134319 134319 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C44%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42366 SAMTools SNP 134349 134349 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C16%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42366 SAMTools SNP 134556 134556 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.32%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42366 SAMTools SNP 137057 137057 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.098%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C190:99 scaffold42366 SAMTools SNP 137069 137069 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C221:72 scaffold42366 SAMTools SNP 140306 140306 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42366 SAMTools SNP 140345 140345 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.22%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42366 SAMTools SNP 140384 140384 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C198:42 scaffold42366 SAMTools SNP 140399 140399 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C251:76 scaffold42366 SAMTools SNP 140588 140588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42366 SAMTools SNP 140659 140659 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C6%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42366 SAMTools SNP 142283 142283 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42366 SAMTools SNP 146117 146117 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D44%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C183:76 scaffold42366 SAMTools SNP 151057 151057 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42366 SAMTools SNP 151114 151114 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 151364 151364 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42366 SAMTools SNP 151624 151624 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42366 SAMTools SNP 151874 151874 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42366 SAMTools SNP 151906 151906 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42366 SAMTools SNP 152351 152351 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.44%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C192:99 scaffold42366 SAMTools SNP 153401 153401 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42366 SAMTools SNP 153445 153445 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42366 SAMTools SNP 153446 153446 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42366 SAMTools SNP 153499 153499 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42366 SAMTools SNP 153511 153511 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42366 SAMTools SNP 153520 153520 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold42366 SAMTools SNP 154065 154065 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42366 SAMTools SNP 154376 154376 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42366 SAMTools SNP 154592 154592 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42366 SAMTools SNP 154595 154595 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold42366 SAMTools SNP 154610 154610 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold42366 SAMTools SNP 155167 155167 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42366 SAMTools SNP 155399 155399 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42366 SAMTools SNP 157000 157000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42366 SAMTools SNP 157098 157098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.15%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C32:35 scaffold42372 SAMTools SNP 30007 30007 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C37:38 scaffold42372 SAMTools SNP 33052 33052 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C93:63 scaffold42372 SAMTools SNP 57353 57353 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42372 SAMTools SNP 60706 60706 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42372 SAMTools SNP 70088 70088 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 82229 82229 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C33%2C0:61 scaffold42380 SAMTools SNP 86174 86174 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C121:99 scaffold42380 SAMTools SNP 90461 90461 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42380 SAMTools SNP 90468 90468 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold42380 SAMTools SNP 90479 90479 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42380 SAMTools SNP 90821 90821 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 94946 94946 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42380 SAMTools SNP 95760 95760 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42380 SAMTools SNP 96024 96024 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D0.054%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold42380 SAMTools SNP 96083 96083 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42380 SAMTools SNP 96113 96113 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 96352 96352 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold42380 SAMTools SNP 96366 96366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42380 SAMTools SNP 98059 98059 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.09%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42380 SAMTools SNP 98297 98297 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42380 SAMTools SNP 98348 98348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C13%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold42380 SAMTools SNP 99055 99055 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42380 SAMTools SNP 99088 99088 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C48:51 scaffold42380 SAMTools SNP 99109 99109 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.15%2C0.36%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42380 SAMTools SNP 100043 100043 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42380 SAMTools SNP 100314 100314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42380 SAMTools SNP 100392 100392 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C17%2C11%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.3%2C1.3e-56%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42380 SAMTools SNP 100446 100446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42380 SAMTools SNP 100825 100825 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.031%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42380 SAMTools SNP 100843 100843 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42380 SAMTools SNP 100870 100870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42380 SAMTools SNP 101529 101529 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.082%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold42380 SAMTools SNP 102626 102626 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42380 SAMTools SNP 102636 102636 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 104399 104399 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.094%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold42380 SAMTools SNP 104423 104423 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42380 SAMTools SNP 104426 104426 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42380 SAMTools SNP 105050 105050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42380 SAMTools SNP 105559 105559 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C183:99 scaffold42380 SAMTools SNP 105571 105571 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42380 SAMTools SNP 105628 105628 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C14%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.28%2C1.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42380 SAMTools SNP 106272 106272 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 107290 107290 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold42380 SAMTools SNP 107580 107580 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold42380 SAMTools SNP 107589 107589 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold42380 SAMTools SNP 107616 107616 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold42380 SAMTools SNP 107691 107691 47.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C2e-11%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C2:5 scaffold42380 SAMTools SNP 107793 107793 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42380 SAMTools SNP 107805 107805 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42380 SAMTools SNP 108249 108249 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C144:99 scaffold42380 SAMTools SNP 108264 108264 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold42380 SAMTools SNP 108697 108697 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold42380 SAMTools SNP 108712 108712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C2%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42380 SAMTools SNP 109048 109048 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C52%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold42380 SAMTools SNP 109071 109071 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42380 SAMTools SNP 109694 109694 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42380 SAMTools SNP 110290 110290 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C42%2C0:81 scaffold42380 SAMTools SNP 110374 110374 36.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold42380 SAMTools SNP 112632 112632 39.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold42380 SAMTools SNP 113813 113813 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold42380 SAMTools SNP 120486 120486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42380 SAMTools SNP 120679 120679 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.51%2C4.2e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42380 SAMTools SNP 120796 120796 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C30%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.8e-22%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C218:99 scaffold42380 SAMTools SNP 121446 121446 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold42380 SAMTools SNP 125495 125495 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C69:28 scaffold42380 SAMTools SNP 127473 127473 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C25%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.059%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42380 SAMTools SNP 128327 128327 164 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C0%2C49%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1.7e-07%2C5.5e-14%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42380 SAMTools SNP 130989 130989 39.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold42380 SAMTools SNP 131766 131766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42380 SAMTools SNP 131772 131772 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42380 SAMTools SNP 132225 132225 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C4%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42380 SAMTools SNP 132829 132829 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42380 SAMTools SNP 149347 149347 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C0.0013%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42380 SAMTools SNP 151403 151403 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.28%2C0.06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold42380 SAMTools SNP 151428 151428 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D3.6e-06%2C1.2e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42380 SAMTools SNP 151643 151643 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42390 SAMTools SNP 6337 6337 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold42390 SAMTools SNP 6899 6899 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C48%2C0:93 scaffold42390 SAMTools SNP 7801 7801 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42390 SAMTools SNP 7842 7842 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42390 SAMTools SNP 8185 8185 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42390 SAMTools SNP 8906 8906 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C20%2C2%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.21%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold42390 SAMTools SNP 8961 8961 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.044%2C7.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C142:99 scaffold42390 SAMTools SNP 9107 9107 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C35:38 scaffold42390 SAMTools SNP 9677 9677 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42390 SAMTools SNP 9909 9909 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold42390 SAMTools SNP 10365 10365 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42390 SAMTools SNP 10813 10813 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold42390 SAMTools SNP 13433 13433 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42390 SAMTools SNP 13596 13596 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42390 SAMTools SNP 13825 13825 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C72%2C0:99 scaffold42390 SAMTools SNP 13974 13974 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C33%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C214%2C0:99 scaffold42390 SAMTools SNP 14676 14676 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C21%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42390 SAMTools SNP 14844 14844 74.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C2e-13%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C4%2C0:7 scaffold42390 SAMTools SNP 15460 15460 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C49%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold42390 SAMTools SNP 20490 20490 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 20521 20521 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 26296 26296 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42390 SAMTools SNP 27119 27119 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42390 SAMTools SNP 58359 58359 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42390 SAMTools SNP 61171 61171 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42390 SAMTools SNP 62276 62276 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold42390 SAMTools SNP 67723 67723 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 78432 78432 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C63%2C0:99 scaffold42390 SAMTools SNP 78680 78680 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold42390 SAMTools SNP 80666 80666 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42390 SAMTools SNP 80697 80697 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 80801 80801 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 81118 81118 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D36%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C161:92 scaffold42390 SAMTools SNP 81196 81196 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C16%3BMQ%3D38%3BFQ%3D46%3BPV4%3D0.001%2C1%2C0.06%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C73:76 scaffold42390 SAMTools SNP 81223 81223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D39%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42390 SAMTools SNP 131836 131836 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.7e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42390 SAMTools SNP 131866 131866 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42390 SAMTools SNP 133921 133921 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42390 SAMTools SNP 133965 133965 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold42390 SAMTools SNP 134004 134004 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42390 SAMTools SNP 134038 134038 20.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold42390 SAMTools SNP 136134 136134 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42390 SAMTools SNP 136167 136167 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42390 SAMTools SNP 136224 136224 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42390 SAMTools SNP 138777 138777 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.019%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C191:59 scaffold42390 SAMTools SNP 138790 138790 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42390 SAMTools SNP 138982 138982 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold42390 SAMTools SNP 139010 139010 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42390 SAMTools SNP 139065 139065 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C173:99 scaffold42390 SAMTools SNP 140327 140327 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0039%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42390 SAMTools SNP 140633 140633 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C144%2C0:99 scaffold42390 SAMTools SNP 140703 140703 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C114%2C0:99 scaffold42390 SAMTools SNP 140759 140759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C12%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42390 SAMTools SNP 144622 144622 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0008%2C0.11%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42390 SAMTools SNP 144625 144625 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.36%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42390 SAMTools SNP 144703 144703 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42390 SAMTools SNP 144816 144816 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42390 SAMTools SNP 150177 150177 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.19%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42390 SAMTools SNP 153879 153879 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.44%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C156:51 scaffold42392 SAMTools SNP 39412 39412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42392 SAMTools SNP 42852 42852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42392 SAMTools SNP 75354 75354 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42392 SAMTools SNP 77422 77422 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.066%2C1%2C8.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold42392 SAMTools SNP 77434 77434 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42392 SAMTools SNP 77443 77443 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42392 SAMTools SNP 77446 77446 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.33%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C80:64 scaffold42392 SAMTools SNP 77518 77518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42392 SAMTools SNP 79022 79022 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold42392 SAMTools SNP 79048 79048 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42392 SAMTools SNP 79061 79061 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42392 SAMTools SNP 79075 79075 53.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold42392 SAMTools SNP 79103 79103 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold42392 SAMTools SNP 80040 80040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold42392 SAMTools SNP 82505 82505 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42392 SAMTools SNP 82582 82582 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42392 SAMTools SNP 82608 82608 166 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C30%2C0:57 scaffold42392 SAMTools SNP 82618 82618 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42392 SAMTools SNP 82621 82621 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold42392 SAMTools SNP 82624 82624 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold42392 SAMTools SNP 91871 91871 84.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold42392 SAMTools SNP 94979 94979 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42392 SAMTools SNP 95042 95042 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0054%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42392 SAMTools SNP 95143 95143 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42392 SAMTools SNP 95909 95909 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C26%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.071%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C243:99 scaffold42392 SAMTools SNP 95927 95927 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C26%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.071%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C228:99 scaffold42392 SAMTools SNP 100272 100272 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42392 SAMTools SNP 100302 100302 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42392 SAMTools SNP 101357 101357 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42392 SAMTools SNP 101378 101378 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.027%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C197:39 scaffold42392 SAMTools SNP 101408 101408 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42392 SAMTools SNP 105764 105764 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42392 SAMTools SNP 106053 106053 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42392 SAMTools SNP 106468 106468 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42392 SAMTools SNP 106483 106483 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42392 SAMTools SNP 107230 107230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42392 SAMTools SNP 107858 107858 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C215:99 scaffold42392 SAMTools SNP 108202 108202 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42392 SAMTools SNP 109000 109000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42392 SAMTools SNP 109083 109083 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold424 SAMTools SNP 4658 4658 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold424 SAMTools SNP 4705 4705 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold424 SAMTools SNP 5754 5754 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold424 SAMTools SNP 7017 7017 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold424 SAMTools SNP 7035 7035 37.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold424 SAMTools SNP 16773 16773 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold424 SAMTools SNP 19198 19198 189 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold424 SAMTools SNP 21328 21328 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.31%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold424 SAMTools SNP 21641 21641 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.25%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C228:99 scaffold424 SAMTools SNP 22840 22840 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.2%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold424 SAMTools SNP 22853 22853 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.54%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold424 SAMTools SNP 23768 23768 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold424 SAMTools SNP 25734 25734 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold424 SAMTools SNP 28256 28256 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C8%2C13%3BMQ%3D48%3BFQ%3D42%3BPV4%3D0.26%2C2.4e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold424 SAMTools SNP 28306 28306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C30%2C12%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold424 SAMTools SNP 32802 32802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C92%2C11%2C38%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.83%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold424 SAMTools SNP 50620 50620 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold424 SAMTools SNP 51987 51987 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D47%3BFQ%3D33%3BPV4%3D1%2C0.054%2C0.15%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C128:63 scaffold424 SAMTools SNP 51990 51990 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold424 SAMTools SNP 52309 52309 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold424 SAMTools SNP 52553 52553 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold424 SAMTools SNP 52828 52828 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold424 SAMTools SNP 53561 53561 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C8%2C0:14 scaffold424 SAMTools SNP 53882 53882 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold424 SAMTools SNP 53899 53899 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 54269 54269 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold424 SAMTools SNP 54337 54337 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 54347 54347 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold424 SAMTools SNP 54631 54631 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 60404 60404 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold424 SAMTools SNP 60883 60883 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold424 SAMTools SNP 87295 87295 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 87356 87356 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 123859 123859 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold424 SAMTools SNP 124466 124466 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold424 SAMTools SNP 125091 125091 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.42%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold424 SAMTools SNP 125114 125114 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold424 SAMTools SNP 160853 160853 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold424 SAMTools SNP 221081 221081 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.56%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C247:99 scaffold424 SAMTools SNP 221284 221284 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold424 SAMTools SNP 221300 221300 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold424 SAMTools SNP 221865 221865 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.15%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold424 SAMTools SNP 221875 221875 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold424 SAMTools SNP 221886 221886 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold424 SAMTools SNP 221898 221898 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold424 SAMTools SNP 222313 222313 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 222325 222325 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold424 SAMTools SNP 225123 225123 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold424 SAMTools SNP 225366 225366 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold424 SAMTools SNP 225536 225536 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold424 SAMTools SNP 225597 225597 151 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C71%2C204%2C0%2C198:29 scaffold424 SAMTools SNP 225612 225612 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold424 SAMTools SNP 226652 226652 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold424 SAMTools SNP 226664 226664 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.12%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold424 SAMTools SNP 227279 227279 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C33%2C0:63 scaffold424 SAMTools SNP 241648 241648 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold424 SAMTools SNP 241809 241809 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold424 SAMTools SNP 243006 243006 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold424 SAMTools SNP 246528 246528 62.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold424 SAMTools SNP 246550 246550 57.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold424 SAMTools SNP 246589 246589 62.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold424 SAMTools SNP 246667 246667 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold424 SAMTools SNP 246837 246837 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 246975 246975 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold424 SAMTools SNP 276608 276608 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold424 SAMTools SNP 296702 296702 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C66%2C0:99 scaffold424 SAMTools SNP 296774 296774 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold424 SAMTools SNP 297072 297072 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold424 SAMTools SNP 297633 297633 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 297660 297660 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold424 SAMTools SNP 297692 297692 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold424 SAMTools SNP 298862 298862 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold424 SAMTools SNP 298913 298913 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold424 SAMTools SNP 299058 299058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold424 SAMTools SNP 299109 299109 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold424 SAMTools SNP 299592 299592 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold424 SAMTools SNP 299693 299693 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.6e-09%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C119:36 scaffold424 SAMTools SNP 301685 301685 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold424 SAMTools SNP 302330 302330 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.035%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold424 SAMTools SNP 305016 305016 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.44%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C166:42 scaffold424 SAMTools SNP 305049 305049 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold424 SAMTools SNP 312452 312452 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 325390 325390 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold424 SAMTools SNP 326758 326758 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold424 SAMTools SNP 331494 331494 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold424 SAMTools SNP 331921 331921 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold424 SAMTools SNP 332846 332846 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold424 SAMTools SNP 333051 333051 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold424 SAMTools SNP 336444 336444 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 337162 337162 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold424 SAMTools SNP 347095 347095 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold424 SAMTools SNP 347641 347641 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42402 SAMTools SNP 34381 34381 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42402 SAMTools SNP 35301 35301 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42402 SAMTools SNP 36937 36937 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42402 SAMTools SNP 39423 39423 21.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1.5e-07%2C1%2C8.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C18:21 scaffold42402 SAMTools SNP 40784 40784 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42402 SAMTools SNP 43720 43720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C6%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42402 SAMTools SNP 43762 43762 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 47413 47413 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold42402 SAMTools SNP 47509 47509 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 52108 52108 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42402 SAMTools SNP 52139 52139 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42402 SAMTools SNP 53051 53051 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C244%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 53134 53134 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42402 SAMTools SNP 53269 53269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C77%2C82%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C4.5e-99%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 53647 53647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C162%2C53%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C7.2e-222%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 53828 53828 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C45%2C0%2C68%3BMQ%3D50%3BFQ%3D92%3BPV4%3D4.2e-23%2C2.6e-37%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42402 SAMTools SNP 53836 53836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 54444 54444 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C37%2C39%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 55265 55265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C28%2C146%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 55674 55674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C32%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 56838 56838 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 56898 56898 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 57514 57514 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C63%2C24%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-07%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 57541 57541 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C90%2C108%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-05%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 57693 57693 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C172%2C18%2C54%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold42402 SAMTools SNP 57708 57708 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C193%2C18%2C55%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42402 SAMTools SNP 57810 57810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C19%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold42402 SAMTools SNP 61163 61163 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C16%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 61595 61595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 64422 64422 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D643%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C318%2C20%2C271%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold42402 SAMTools SNP 64913 64913 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C34%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 65210 65210 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D863%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C471%2C11%2C339%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.13%2C8.8e-213%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold42402 SAMTools SNP 67400 67400 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C72%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 67933 67933 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C16%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 67972 67972 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42402 SAMTools SNP 67989 67989 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C40%2C1%2C27%3BMQ%3D50%3BFQ%3D53%3BPV4%3D7.7e-06%2C2.5e-29%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold42402 SAMTools SNP 69045 69045 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42402 SAMTools SNP 69147 69147 94.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C18%2C0:33 scaffold42402 SAMTools SNP 69153 69153 98.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold42402 SAMTools SNP 69628 69628 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42402 SAMTools SNP 75347 75347 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold42402 SAMTools SNP 75368 75368 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold42402 SAMTools SNP 75392 75392 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold42402 SAMTools SNP 75409 75409 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42402 SAMTools SNP 75423 75423 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C85:88 scaffold42402 SAMTools SNP 75704 75704 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42402 SAMTools SNP 76549 76549 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.024%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold42402 SAMTools SNP 77044 77044 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0143%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.016%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C197:30 scaffold42402 SAMTools SNP 77078 77078 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold42402 SAMTools SNP 77376 77376 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42402 SAMTools SNP 79284 79284 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42402 SAMTools SNP 84631 84631 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C248:99 scaffold42402 SAMTools SNP 86442 86442 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42402 SAMTools SNP 87394 87394 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold42402 SAMTools SNP 90468 90468 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42402 SAMTools SNP 92265 92265 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42402 SAMTools SNP 94478 94478 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C0.037%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42402 SAMTools SNP 95862 95862 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold42402 SAMTools SNP 96337 96337 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.55%2C2.7e-08%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C232:99 scaffold42402 SAMTools SNP 96730 96730 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 96745 96745 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42402 SAMTools SNP 97985 97985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42402 SAMTools SNP 98027 98027 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C14%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.2e-14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 98675 98675 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42402 SAMTools SNP 99916 99916 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 99949 99949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 99970 99970 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.09%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42402 SAMTools SNP 100000 100000 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C15%2C0:27 scaffold42402 SAMTools SNP 100009 100009 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42402 SAMTools SNP 101246 101246 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42402 SAMTools SNP 101276 101276 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold42402 SAMTools SNP 101321 101321 66.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C12%2C0:21 scaffold42402 SAMTools SNP 101444 101444 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42402 SAMTools SNP 101525 101525 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D48%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C209:99 scaffold42402 SAMTools SNP 102305 102305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D29%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42402 SAMTools SNP 102340 102340 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D27%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42402 SAMTools SNP 102374 102374 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C10%2C16%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.25%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 102629 102629 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C66%2C0:99 scaffold42402 SAMTools SNP 102635 102635 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.01%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C16%2C0:29 scaffold42402 SAMTools SNP 102743 102743 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42402 SAMTools SNP 102749 102749 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.13%2C0.032%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold42402 SAMTools SNP 103202 103202 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42402 SAMTools SNP 103218 103218 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42402 SAMTools SNP 103340 103340 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.07%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C225:99 scaffold42402 SAMTools SNP 103703 103703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C39%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42402 SAMTools SNP 103848 103848 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 104289 104289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42402 SAMTools SNP 104749 104749 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42402 SAMTools SNP 104788 104788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42402 SAMTools SNP 104818 104818 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C27%3BMQ%3D50%3BFQ%3D221%3BPV4%3D3.1e-05%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42402 SAMTools SNP 104872 104872 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00077%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 105233 105233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42402 SAMTools SNP 105245 105245 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42402 SAMTools SNP 105299 105299 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.19%2C8.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold42402 SAMTools SNP 105332 105332 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.12%2C2.9e-06%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42402 SAMTools SNP 105368 105368 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42402 SAMTools SNP 105380 105380 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.1%2C0.03%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold42402 SAMTools SNP 105709 105709 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 105977 105977 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 106011 106011 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00017%2C0.0013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42402 SAMTools SNP 106046 106046 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C0%2C13%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.026%2C0.00023%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold42402 SAMTools SNP 106179 106179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C43%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42402 SAMTools SNP 106685 106685 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.0055%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C118:93 scaffold42402 SAMTools SNP 111442 111442 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold42402 SAMTools SNP 119221 119221 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42402 SAMTools SNP 124756 124756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42402 SAMTools SNP 125133 125133 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.53%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42402 SAMTools SNP 125147 125147 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42402 SAMTools SNP 125453 125453 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C8%2C28%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.54%2C2.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42402 SAMTools SNP 125832 125832 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 125925 125925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42402 SAMTools SNP 126988 126988 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D5.4e-05%2C3.4e-09%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold42402 SAMTools SNP 128550 128550 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D91.9%3BPV4%3D0.14%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C119:99 scaffold42402 SAMTools SNP 133529 133529 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42402 SAMTools SNP 133532 133532 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42402 SAMTools SNP 133660 133660 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42402 SAMTools SNP 134598 134598 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42402 SAMTools SNP 134640 134640 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42402 SAMTools SNP 135062 135062 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42402 SAMTools SNP 135088 135088 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42402 SAMTools SNP 135274 135274 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.2%2C3.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C254:77 scaffold42402 SAMTools SNP 135332 135332 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42402 SAMTools SNP 135825 135825 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold42402 SAMTools SNP 136339 136339 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42402 SAMTools SNP 144361 144361 28.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42408 SAMTools SNP 4729 4729 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C218:69 scaffold42408 SAMTools SNP 4749 4749 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.26%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold42408 SAMTools SNP 5185 5185 168 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C54%2C228%2C0%2C222:63 scaffold42408 SAMTools SNP 5188 5188 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C223:99 scaffold42408 SAMTools SNP 5209 5209 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold42408 SAMTools SNP 5715 5715 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.27%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42408 SAMTools SNP 6712 6712 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.38%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold42408 SAMTools SNP 6736 6736 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C171:79 scaffold42408 SAMTools SNP 6843 6843 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42408 SAMTools SNP 6877 6877 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42408 SAMTools SNP 6880 6880 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42408 SAMTools SNP 7466 7466 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.1e-16%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C155:60 scaffold42408 SAMTools SNP 9109 9109 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold42408 SAMTools SNP 9154 9154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42408 SAMTools SNP 10878 10878 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold42408 SAMTools SNP 12870 12870 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42408 SAMTools SNP 13286 13286 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42408 SAMTools SNP 13384 13384 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42408 SAMTools SNP 16938 16938 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42408 SAMTools SNP 17082 17082 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D0.25%2C8.4e-05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold42408 SAMTools SNP 17494 17494 18 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42408 SAMTools SNP 24747 24747 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold42408 SAMTools SNP 29487 29487 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C51:54 scaffold42408 SAMTools SNP 29611 29611 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold42408 SAMTools SNP 30234 30234 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42408 SAMTools SNP 30777 30777 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42408 SAMTools SNP 31023 31023 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42408 SAMTools SNP 31038 31038 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42408 SAMTools SNP 31146 31146 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C149:99 scaffold42408 SAMTools SNP 31221 31221 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold42408 SAMTools SNP 31601 31601 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C161:99 scaffold42408 SAMTools SNP 69714 69714 42.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold42408 SAMTools SNP 72437 72437 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold42408 SAMTools SNP 88113 88113 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold42408 SAMTools SNP 101452 101452 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42408 SAMTools SNP 101507 101507 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42408 SAMTools SNP 108225 108225 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42408 SAMTools SNP 111125 111125 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42408 SAMTools SNP 114645 114645 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold42408 SAMTools SNP 114693 114693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42408 SAMTools SNP 114908 114908 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42408 SAMTools SNP 138729 138729 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold42408 SAMTools SNP 152514 152514 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42408 SAMTools SNP 155712 155712 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold42408 SAMTools SNP 156328 156328 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold42422 SAMTools SNP 389 389 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42422 SAMTools SNP 413 413 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 2922 2922 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42422 SAMTools SNP 3183 3183 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.51%2C6.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42422 SAMTools SNP 8308 8308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 10216 10216 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42422 SAMTools SNP 12740 12740 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C92%2C2%2C14%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.36%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42422 SAMTools SNP 16436 16436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C87%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.33%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 16466 16466 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C1%2C10%3BMQ%3D50%3BFQ%3D170%3BPV4%3D3.6e-07%2C0.23%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42422 SAMTools SNP 16567 16567 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.00036%2C2.8e-10%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42422 SAMTools SNP 16638 16638 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 18890 18890 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D203%2C151%2C47%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0001%2C1%2C1%2C4.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42422 SAMTools SNP 18905 18905 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C152%2C227%2C133%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1.8e-286%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 18977 18977 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42422 SAMTools SNP 19383 19383 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C9%2C82%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 19398 19398 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C20%2C100%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 19704 19704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C76%2C25%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 20025 20025 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 20058 20058 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C2%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 20151 20151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42422 SAMTools SNP 20430 20430 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C207%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 20478 20478 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 20547 20547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C225%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 20568 20568 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C115%2C41%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C0.17%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 20777 20777 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C35%2C39%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1.5e-12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 20798 20798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C43%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42422 SAMTools SNP 21585 21585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C26%2C70%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 21612 21612 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 23098 23098 95.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold42422 SAMTools SNP 24110 24110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D609%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C182%2C351%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.55%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 24369 24369 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C132%2C59%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 24393 24393 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C123%2C24%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.00059%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 25819 25819 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C6%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold42422 SAMTools SNP 25939 25939 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C39%2C0:64 scaffold42422 SAMTools SNP 26574 26574 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C4%2C48%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.02%2C6.3e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold42422 SAMTools SNP 27598 27598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 28256 28256 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C207%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 29017 29017 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.3e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42422 SAMTools SNP 29674 29674 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C48%2C0:93 scaffold42422 SAMTools SNP 30578 30578 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C36%2C0:69 scaffold42422 SAMTools SNP 35282 35282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42422 SAMTools SNP 35928 35928 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.089%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold42422 SAMTools SNP 35929 35929 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold42422 SAMTools SNP 36655 36655 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C15%2C0:27 scaffold42422 SAMTools SNP 37012 37012 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42422 SAMTools SNP 37024 37024 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.47%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42422 SAMTools SNP 37347 37347 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42422 SAMTools SNP 37650 37650 69.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D42%3BFQ%3D-39%3BPV4%3D0.43%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold42422 SAMTools SNP 37692 37692 40.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold42422 SAMTools SNP 38642 38642 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42422 SAMTools SNP 38894 38894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 38951 38951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42422 SAMTools SNP 39258 39258 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D25%3BFQ%3D5.49%3BPV4%3D0.25%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold42422 SAMTools SNP 39263 39263 7.83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D6%2C0%2C16%2C1%3BMQ%3D21%3BFQ%3D-10.4%3BPV4%3D1%2C1.7e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C17:21 scaffold42422 SAMTools SNP 39595 39595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C23%3BMQ%3D28%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold42422 SAMTools SNP 39766 39766 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C10%3BMQ%3D35%3BFQ%3D138%3BPV4%3D0.44%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C206:99 scaffold42422 SAMTools SNP 39837 39837 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C10%3BMQ%3D20%3BFQ%3D-52%3BPV4%3D1%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C25%2C0:23 scaffold42422 SAMTools SNP 40303 40303 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C6%2C0:10 scaffold42422 SAMTools SNP 40342 40342 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D38%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C139:99 scaffold42422 SAMTools SNP 40507 40507 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 40696 40696 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C6%3BMQ%3D37%3BFQ%3D32%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C59:62 scaffold42422 SAMTools SNP 40736 40736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C21%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.017%2C0.25%2C0.074%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 45313 45313 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C5%2C0%3BMQ%3D39%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C218:99 scaffold42422 SAMTools SNP 45604 45604 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C1%3BMQ%3D45%3BFQ%3D28%3BPV4%3D0.48%2C0.099%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42422 SAMTools SNP 45682 45682 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42422 SAMTools SNP 45969 45969 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C21%2C0:39 scaffold42422 SAMTools SNP 46003 46003 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 46027 46027 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 46188 46188 57 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D27%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C47%2C20%2C73%2C0%2C70:51 scaffold42422 SAMTools SNP 46237 46237 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold42422 SAMTools SNP 46269 46269 52.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold42422 SAMTools SNP 46542 46542 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42422 SAMTools SNP 47086 47086 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C7%3BMQ%3D39%3BFQ%3D114%3BPV4%3D0.22%2C0.11%2C0.021%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C178:99 scaffold42422 SAMTools SNP 47119 47119 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D32%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C96:60 scaffold42422 SAMTools SNP 47126 47126 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D27%3BFQ%3D9.53%3BPV4%3D1%2C0.27%2C0.06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C67:37 scaffold42422 SAMTools SNP 47526 47526 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C1%3BMQ%3D46%3BFQ%3D120%3BPV4%3D0.32%2C0.00014%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold42422 SAMTools SNP 47527 47527 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C7%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.068%2C1%2C0.0058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42422 SAMTools SNP 47572 47572 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C18%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C5.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C251:99 scaffold42422 SAMTools SNP 47633 47633 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42422 SAMTools SNP 47780 47780 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 49507 49507 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C56:55 scaffold42422 SAMTools SNP 51233 51233 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42422 SAMTools SNP 51239 51239 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42422 SAMTools SNP 51424 51424 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 52906 52906 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 53158 53158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 54742 54742 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 55663 55663 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0099%2C4.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C159:99 scaffold42422 SAMTools SNP 56344 56344 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 56377 56377 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 56695 56695 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 56752 56752 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 58971 58971 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 59494 59494 222 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0%2C232%2C1%2C229:93 scaffold42422 SAMTools SNP 59530 59530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42422 SAMTools SNP 60822 60822 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42422 SAMTools SNP 61248 61248 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42422 SAMTools SNP 61295 61295 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42422 SAMTools SNP 61565 61565 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42422 SAMTools SNP 61595 61595 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42422 SAMTools SNP 61625 61625 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42422 SAMTools SNP 62102 62102 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold42422 SAMTools SNP 62365 62365 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42422 SAMTools SNP 62515 62515 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42422 SAMTools SNP 62898 62898 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 63205 63205 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 63229 63229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 63912 63912 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42422 SAMTools SNP 63943 63943 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42422 SAMTools SNP 64406 64406 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 64409 64409 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42422 SAMTools SNP 65278 65278 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 68823 68823 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C102%2C0:99 scaffold42422 SAMTools SNP 73919 73919 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42422 SAMTools SNP 74168 74168 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C255%2C0:99 scaffold42422 SAMTools SNP 74522 74522 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C85%2C17%2C70%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.85%2C1.3e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42422 SAMTools SNP 74704 74704 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C12%2C17%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.81%2C3.7e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold42422 SAMTools SNP 75065 75065 64.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C7.6e-12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C10%2C0:17 scaffold42422 SAMTools SNP 75182 75182 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C10%2C0:17 scaffold42422 SAMTools SNP 75833 75833 98.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold42422 SAMTools SNP 76247 76247 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C8.6e-08%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C42:45 scaffold42422 SAMTools SNP 76474 76474 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 78607 78607 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 78859 78859 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C42%2C0:81 scaffold42422 SAMTools SNP 79150 79150 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42422 SAMTools SNP 79165 79165 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42422 SAMTools SNP 80262 80262 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C15%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.28%2C5.2e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42422 SAMTools SNP 80430 80430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 81378 81378 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C7%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.32%2C1.8e-25%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42422 SAMTools SNP 84521 84521 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 84557 84557 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42422 SAMTools SNP 85046 85046 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42422 SAMTools SNP 85055 85055 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold42422 SAMTools SNP 85493 85493 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C77:80 scaffold42422 SAMTools SNP 85695 85695 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C7.5e-12%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C178:99 scaffold42422 SAMTools SNP 86240 86240 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold42422 SAMTools SNP 86420 86420 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C7%2C12%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.76%2C9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42422 SAMTools SNP 86979 86979 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42422 SAMTools SNP 87271 87271 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold42422 SAMTools SNP 87298 87298 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42422 SAMTools SNP 87819 87819 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C13%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42422 SAMTools SNP 88391 88391 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0128%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42422 SAMTools SNP 88565 88565 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42422 SAMTools SNP 88616 88616 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42422 SAMTools SNP 88649 88649 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42422 SAMTools SNP 89744 89744 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42422 SAMTools SNP 89912 89912 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42422 SAMTools SNP 90276 90276 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42422 SAMTools SNP 90336 90336 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 90348 90348 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 90357 90357 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 92280 92280 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00077%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C178:47 scaffold42422 SAMTools SNP 92312 92312 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C76:79 scaffold42422 SAMTools SNP 95255 95255 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42422 SAMTools SNP 95274 95274 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42422 SAMTools SNP 95298 95298 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42422 SAMTools SNP 95301 95301 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42422 SAMTools SNP 96140 96140 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42422 SAMTools SNP 96158 96158 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold42422 SAMTools SNP 96881 96881 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold42422 SAMTools SNP 98278 98278 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42422 SAMTools SNP 98284 98284 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold42422 SAMTools SNP 98341 98341 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42422 SAMTools SNP 98877 98877 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold42422 SAMTools SNP 98886 98886 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42422 SAMTools SNP 103445 103445 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C156:99 scaffold42422 SAMTools SNP 103478 103478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42422 SAMTools SNP 103550 103550 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 103553 103553 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42422 SAMTools SNP 104019 104019 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42422 SAMTools SNP 104027 104027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C6%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold42422 SAMTools SNP 104078 104078 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42422 SAMTools SNP 104241 104241 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 106653 106653 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42422 SAMTools SNP 106716 106716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42422 SAMTools SNP 107102 107102 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold42422 SAMTools SNP 107465 107465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42422 SAMTools SNP 107498 107498 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42422 SAMTools SNP 109111 109111 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42422 SAMTools SNP 114818 114818 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D45%3BFQ%3D-4.75%3BPV4%3D1%2C8.8e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C24:27 scaffold42422 SAMTools SNP 114858 114858 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D42%3BFQ%3D-39%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold42422 SAMTools SNP 114867 114867 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C163:36 scaffold42422 SAMTools SNP 115370 115370 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D1%2C1%2C0.039%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C208:31 scaffold42422 SAMTools SNP 115388 115388 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold42422 SAMTools SNP 115394 115394 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42422 SAMTools SNP 116544 116544 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold42422 SAMTools SNP 116545 116545 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42422 SAMTools SNP 117445 117445 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold42422 SAMTools SNP 117449 117449 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42422 SAMTools SNP 118087 118087 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold42422 SAMTools SNP 118769 118769 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42422 SAMTools SNP 118796 118796 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42422 SAMTools SNP 118824 118824 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42422 SAMTools SNP 119008 119008 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42422 SAMTools SNP 119417 119417 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42422 SAMTools SNP 121341 121341 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42422 SAMTools SNP 123158 123158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42422 SAMTools SNP 123281 123281 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C2%2C65%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.52%2C6.9e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C237:99 scaffold42422 SAMTools SNP 132046 132046 43.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold42422 SAMTools SNP 132393 132393 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold42422 SAMTools SNP 132830 132830 11.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold42422 SAMTools SNP 144018 144018 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0014%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C88:41 scaffold42422 SAMTools SNP 144028 144028 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C0.16%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C121:99 scaffold42422 SAMTools SNP 144029 144029 96 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C0.23%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C121:99 scaffold42422 SAMTools SNP 144736 144736 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold42422 SAMTools SNP 144746 144746 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold42422 SAMTools SNP 144762 144762 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42422 SAMTools SNP 154841 154841 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42422 SAMTools SNP 160171 160171 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42440 SAMTools SNP 544 544 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 637 637 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 665 665 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 1585 1585 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42440 SAMTools SNP 67465 67465 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42440 SAMTools SNP 70244 70244 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D41%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C5%2C0:9 scaffold42440 SAMTools SNP 70536 70536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 70585 70585 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D41%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C5%2C0:9 scaffold42440 SAMTools SNP 77256 77256 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42440 SAMTools SNP 77260 77260 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42440 SAMTools SNP 102754 102754 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42440 SAMTools SNP 102865 102865 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.13%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C66:31 scaffold42440 SAMTools SNP 104399 104399 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 104411 104411 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42440 SAMTools SNP 104934 104934 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.092%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold42440 SAMTools SNP 104956 104956 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C158:63 scaffold42440 SAMTools SNP 104999 104999 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0018%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold42440 SAMTools SNP 109581 109581 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold42440 SAMTools SNP 109592 109592 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42440 SAMTools SNP 109598 109598 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C136:36 scaffold42440 SAMTools SNP 109683 109683 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0077%2C2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42440 SAMTools SNP 110421 110421 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C142:31 scaffold42440 SAMTools SNP 111377 111377 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42440 SAMTools SNP 111391 111391 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42440 SAMTools SNP 112451 112451 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.51%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42440 SAMTools SNP 112477 112477 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C225:47 scaffold42440 SAMTools SNP 113065 113065 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42440 SAMTools SNP 139889 139889 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42440 SAMTools SNP 140184 140184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42440 SAMTools SNP 148672 148672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42440 SAMTools SNP 148804 148804 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42440 SAMTools SNP 156586 156586 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42440 SAMTools SNP 156617 156617 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42440 SAMTools SNP 158708 158708 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42440 SAMTools SNP 159133 159133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42440 SAMTools SNP 159158 159158 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C45%2C0:87 scaffold42440 SAMTools SNP 159317 159317 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold42446 SAMTools SNP 1695 1695 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 1817 1817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 1818 1818 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 1957 1957 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42446 SAMTools SNP 2343 2343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42446 SAMTools SNP 2346 2346 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42446 SAMTools SNP 2361 2361 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C42%2C0:81 scaffold42446 SAMTools SNP 2826 2826 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C7%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.014%2C2.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42446 SAMTools SNP 2847 2847 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42446 SAMTools SNP 2883 2883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.16%2C0.25%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold42446 SAMTools SNP 3040 3040 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42446 SAMTools SNP 3500 3500 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold42446 SAMTools SNP 3568 3568 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 3579 3579 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 4338 4338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C17%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42446 SAMTools SNP 4389 4389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42446 SAMTools SNP 4479 4479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42446 SAMTools SNP 4521 4521 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.16%2C0.027%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42446 SAMTools SNP 4529 4529 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42446 SAMTools SNP 5071 5071 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 5308 5308 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42446 SAMTools SNP 5772 5772 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C224:65 scaffold42446 SAMTools SNP 5809 5809 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42446 SAMTools SNP 6841 6841 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42446 SAMTools SNP 6922 6922 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C66:69 scaffold42446 SAMTools SNP 8371 8371 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42446 SAMTools SNP 8380 8380 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.58%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42446 SAMTools SNP 8935 8935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C28%2C34%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 9340 9340 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C34%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 9346 9346 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42446 SAMTools SNP 9592 9592 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C23%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 10753 10753 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C22%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 10801 10801 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C5%2C14%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.17%2C3.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42446 SAMTools SNP 10867 10867 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42446 SAMTools SNP 10903 10903 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 12945 12945 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold42446 SAMTools SNP 13162 13162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 13243 13243 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C6%2C2%3BMQ%3D35%3BFQ%3D24%3BPV4%3D0.24%2C1%2C0.064%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C253:54 scaffold42446 SAMTools SNP 17536 17536 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D26%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42446 SAMTools SNP 17572 17572 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C14%3BMQ%3D36%3BFQ%3D107%3BPV4%3D0.058%2C1%2C0.085%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C134:99 scaffold42446 SAMTools SNP 17605 17605 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold42446 SAMTools SNP 17848 17848 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42446 SAMTools SNP 17869 17869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42446 SAMTools SNP 17923 17923 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C5%2C43%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold42446 SAMTools SNP 17968 17968 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42446 SAMTools SNP 18399 18399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42446 SAMTools SNP 18447 18447 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C123%2C36%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 18765 18765 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0017%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 19153 19153 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.48%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42446 SAMTools SNP 22579 22579 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42446 SAMTools SNP 23631 23631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42446 SAMTools SNP 29625 29625 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C158%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42446 SAMTools SNP 32320 32320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C73%2C41%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0024%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42446 SAMTools SNP 34587 34587 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.11%2C1%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42446 SAMTools SNP 34783 34783 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.066%2C0.0008%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold42446 SAMTools SNP 34788 34788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42446 SAMTools SNP 75323 75323 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C145:99 scaffold42446 SAMTools SNP 77746 77746 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42446 SAMTools SNP 78462 78462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42446 SAMTools SNP 79155 79155 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42446 SAMTools SNP 79263 79263 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42446 SAMTools SNP 79611 79611 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42446 SAMTools SNP 79689 79689 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 79713 79713 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 81199 81199 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 81208 81208 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42446 SAMTools SNP 82752 82752 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42446 SAMTools SNP 84526 84526 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42446 SAMTools SNP 86301 86301 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold42446 SAMTools SNP 86404 86404 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42446 SAMTools SNP 86637 86637 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 88202 88202 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold42446 SAMTools SNP 88210 88210 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold42446 SAMTools SNP 88782 88782 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42446 SAMTools SNP 89278 89278 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold42446 SAMTools SNP 90062 90062 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42446 SAMTools SNP 90601 90601 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 90770 90770 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold42446 SAMTools SNP 91127 91127 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 91875 91875 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42446 SAMTools SNP 91886 91886 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42446 SAMTools SNP 94753 94753 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42446 SAMTools SNP 97708 97708 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold42446 SAMTools SNP 100658 100658 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C190:99 scaffold42446 SAMTools SNP 102145 102145 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0067%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42446 SAMTools SNP 102775 102775 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42446 SAMTools SNP 103390 103390 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold42446 SAMTools SNP 104728 104728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42446 SAMTools SNP 109390 109390 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42446 SAMTools SNP 113532 113532 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42446 SAMTools SNP 113769 113769 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42446 SAMTools SNP 114767 114767 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.11%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C158:92 scaffold42446 SAMTools SNP 115521 115521 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42446 SAMTools SNP 115526 115526 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42446 SAMTools SNP 115540 115540 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42446 SAMTools SNP 117146 117146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42446 SAMTools SNP 117266 117266 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.8%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C77:80 scaffold42446 SAMTools SNP 117287 117287 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.053%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold42446 SAMTools SNP 117571 117571 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42446 SAMTools SNP 118095 118095 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold42446 SAMTools SNP 118834 118834 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0077%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42446 SAMTools SNP 118924 118924 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C234:99 scaffold42446 SAMTools SNP 119422 119422 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42446 SAMTools SNP 119801 119801 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C164:74 scaffold42446 SAMTools SNP 120461 120461 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42446 SAMTools SNP 120463 120463 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42446 SAMTools SNP 121928 121928 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42446 SAMTools SNP 121976 121976 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42446 SAMTools SNP 124392 124392 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold42446 SAMTools SNP 125749 125749 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42446 SAMTools SNP 125908 125908 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C12%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold42446 SAMTools SNP 125947 125947 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C32%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold42448 SAMTools SNP 5670 5670 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42448 SAMTools SNP 7012 7012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C18%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42448 SAMTools SNP 7408 7408 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 8006 8006 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 8048 8048 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C569%2C243%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 8446 8446 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42448 SAMTools SNP 8743 8743 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C405%2C19%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 8750 8750 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C402%2C45%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 9456 9456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D509%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D271%2C93%2C109%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 9462 9462 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D518%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D275%2C94%2C109%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 9928 9928 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C87%2C92%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1e-11%2C0.47%2C1%2C1.2e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42448 SAMTools SNP 10055 10055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C100%2C95%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-13%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 10569 10569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C187%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 10633 10633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C53%2C194%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 10825 10825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42448 SAMTools SNP 10874 10874 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C56%2C2%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 11072 11072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 11318 11318 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42448 SAMTools SNP 14624 14624 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C240:99 scaffold42448 SAMTools SNP 14639 14639 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C239:99 scaffold42448 SAMTools SNP 15732 15732 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42448 SAMTools SNP 15744 15744 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42448 SAMTools SNP 59269 59269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42448 SAMTools SNP 62330 62330 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42448 SAMTools SNP 62623 62623 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C0%2C12%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.023%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold42448 SAMTools SNP 62679 62679 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 62898 62898 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C36%2C0:69 scaffold42448 SAMTools SNP 63025 63025 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42448 SAMTools SNP 63484 63484 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42448 SAMTools SNP 63511 63511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42448 SAMTools SNP 63560 63560 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42448 SAMTools SNP 64041 64041 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42448 SAMTools SNP 64077 64077 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42448 SAMTools SNP 64766 64766 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C30%2C0:57 scaffold42448 SAMTools SNP 65034 65034 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42448 SAMTools SNP 65057 65057 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42448 SAMTools SNP 65521 65521 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42448 SAMTools SNP 65616 65616 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42448 SAMTools SNP 70241 70241 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold42448 SAMTools SNP 71821 71821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C69%2C0%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 71855 71855 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C17%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C162:99 scaffold42448 SAMTools SNP 72062 72062 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C57%2C0:99 scaffold42448 SAMTools SNP 72140 72140 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.27%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold42448 SAMTools SNP 72487 72487 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.45%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42448 SAMTools SNP 73355 73355 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42448 SAMTools SNP 107640 107640 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42448 SAMTools SNP 114801 114801 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42448 SAMTools SNP 114834 114834 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42448 SAMTools SNP 115424 115424 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0026%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42448 SAMTools SNP 115497 115497 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C71:68 scaffold42448 SAMTools SNP 118078 118078 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C39%2C0:74 scaffold42448 SAMTools SNP 121448 121448 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C0.049%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C145:99 scaffold42448 SAMTools SNP 137564 137564 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42448 SAMTools SNP 137839 137839 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.36%2C0.24%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold42448 SAMTools SNP 137849 137849 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C0.081%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42448 SAMTools SNP 137886 137886 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.24%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold42448 SAMTools SNP 138213 138213 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C24%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C3.3e-15%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C240:99 scaffold42448 SAMTools SNP 138283 138283 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.0035%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold42448 SAMTools SNP 141372 141372 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.024%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42448 SAMTools SNP 142330 142330 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C5%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42448 SAMTools SNP 144917 144917 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C41%2C9%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D9.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42448 SAMTools SNP 144918 144918 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C0%2C15%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00046%2C1.4e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42448 SAMTools SNP 145417 145417 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold42448 SAMTools SNP 145436 145436 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42448 SAMTools SNP 145501 145501 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C8%2C2%2C9%3BMQ%3D50%3BFQ%3D76%3BPV4%3D7.5e-06%2C0.00048%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42448 SAMTools SNP 145549 145549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C25%2C15%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 146019 146019 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C60%2C14%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 147092 147092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 147190 147190 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.31%2C0.41%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold42448 SAMTools SNP 149132 149132 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold42448 SAMTools SNP 151403 151403 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42448 SAMTools SNP 159632 159632 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 159968 159968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C56%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 159997 159997 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C56%2C18%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 160186 160186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C51%2C10%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 160220 160220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C35%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-06%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42448 SAMTools SNP 160666 160666 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C76%2C5%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.16%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42448 SAMTools SNP 161321 161321 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C27%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.024%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold42448 SAMTools SNP 161359 161359 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42450 SAMTools SNP 144 144 52.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C1%2C0:4 scaffold42450 SAMTools SNP 272 272 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold42450 SAMTools SNP 298 298 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42450 SAMTools SNP 1533 1533 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42450 SAMTools SNP 1586 1586 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C19%2C0%3BMQ%3D46%3BFQ%3D205%3BPV4%3D1%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42450 SAMTools SNP 1637 1637 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C38%3BMQ%3D45%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42450 SAMTools SNP 1742 1742 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C3%2C18%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.22%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 3098 3098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42450 SAMTools SNP 3126 3126 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C16%2C20%3BMQ%3D50%3BFQ%3D216%3BPV4%3D2.8e-07%2C0.1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42450 SAMTools SNP 3141 3141 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C21%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold42450 SAMTools SNP 3170 3170 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C23%2C30%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.008%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42450 SAMTools SNP 3466 3466 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C258%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 4663 4663 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C40%2C109%2C124%3BMQ%3D48%3BFQ%3D225%3BPV4%3D7.5e-08%2C1%2C0.037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 6901 6901 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42450 SAMTools SNP 6993 6993 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42450 SAMTools SNP 7072 7072 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C11%2C8%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.049%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42450 SAMTools SNP 7824 7824 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C57%2C1%2C10%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold42450 SAMTools SNP 8107 8107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 8124 8124 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 8368 8368 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C483%2C216%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 8646 8646 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D932%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C814%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 8663 8663 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C408%2C3%2C181%3BMQ%3D48%3BFQ%3D133%3BPV4%3D9.4e-06%2C1%2C0.029%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42450 SAMTools SNP 9229 9229 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1740%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D850%2C59%2C765%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 9605 9605 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D760%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C248%2C143%2C168%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C4.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 10111 10111 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C44%2C152%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 11140 11140 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D163%2C40%2C183%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 11594 11594 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C45%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold42450 SAMTools SNP 11604 11604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C46%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold42450 SAMTools SNP 11896 11896 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D654%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C221%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 11908 11908 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C263%2C35%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 13832 13832 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C32:35 scaffold42450 SAMTools SNP 13917 13917 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C72%2C56%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.1e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 14123 14123 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold42450 SAMTools SNP 22588 22588 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.2e-37%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C208:36 scaffold42450 SAMTools SNP 22702 22702 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C37%2C51%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-06%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 23767 23767 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 23809 23809 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C11%2C9%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.19%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42450 SAMTools SNP 24024 24024 9.31 . . REF=N;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C42%2C36%2C42%2C0%2C36:8 scaffold42450 SAMTools SNP 24025 24025 27 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold42450 SAMTools SNP 26368 26368 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C5%2C82%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 29174 29174 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C5%2C5%2C20%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1.7e-18%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42450 SAMTools SNP 30308 30308 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.002%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42450 SAMTools SNP 30497 30497 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C284%2C27%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 30862 30862 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C54%2C9%2C78%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C3.7e-91%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42450 SAMTools SNP 32735 32735 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C42%2C0:81 scaffold42450 SAMTools SNP 34150 34150 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 34156 34156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 36895 36895 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42450 SAMTools SNP 37010 37010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 37699 37699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42450 SAMTools SNP 37749 37749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 39748 39748 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C52%2C2%2C10%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.72%2C0.018%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold42450 SAMTools SNP 40798 40798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C11%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42450 SAMTools SNP 40813 40813 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42450 SAMTools SNP 43265 43265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C21%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42450 SAMTools SNP 43980 43980 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C18%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.00025%2C1%2C1%2C5.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42450 SAMTools SNP 45114 45114 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42450 SAMTools SNP 45437 45437 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.54%2C1.7e-05%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42450 SAMTools SNP 46124 46124 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C110:45 scaffold42450 SAMTools SNP 46136 46136 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42450 SAMTools SNP 46647 46647 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42450 SAMTools SNP 46707 46707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C5%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42450 SAMTools SNP 47316 47316 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 47588 47588 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C10%2C16%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold42450 SAMTools SNP 47651 47651 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42450 SAMTools SNP 47825 47825 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C6%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.23%2C0.032%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42450 SAMTools SNP 48121 48121 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42450 SAMTools SNP 49021 49021 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42450 SAMTools SNP 74520 74520 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C30%2C0:57 scaffold42450 SAMTools SNP 75167 75167 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C36%2C10%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.71%2C2.5e-44%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C234:99 scaffold42450 SAMTools SNP 75207 75207 205 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.02%2C0.37%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42450 SAMTools SNP 75382 75382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42450 SAMTools SNP 75430 75430 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.31%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold42450 SAMTools SNP 75484 75484 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42450 SAMTools SNP 75608 75608 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42450 SAMTools SNP 75621 75621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold42450 SAMTools SNP 75663 75663 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold42450 SAMTools SNP 75899 75899 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42450 SAMTools SNP 76019 76019 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42450 SAMTools SNP 78521 78521 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.017%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold42450 SAMTools SNP 78529 78529 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0034%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold42450 SAMTools SNP 79458 79458 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42450 SAMTools SNP 85353 85353 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42450 SAMTools SNP 85364 85364 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42466 SAMTools SNP 29 29 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 176 176 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 950 950 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42466 SAMTools SNP 1208 1208 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 1783 1783 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C0.15%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold42466 SAMTools SNP 2075 2075 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.055%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42466 SAMTools SNP 2951 2951 80.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold42466 SAMTools SNP 3505 3505 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold42466 SAMTools SNP 3523 3523 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42466 SAMTools SNP 3943 3943 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold42466 SAMTools SNP 5805 5805 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42466 SAMTools SNP 7204 7204 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C132:46 scaffold42466 SAMTools SNP 7241 7241 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42466 SAMTools SNP 7595 7595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42466 SAMTools SNP 7667 7667 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42466 SAMTools SNP 8792 8792 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C4.4e-06%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42466 SAMTools SNP 8861 8861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42466 SAMTools SNP 9219 9219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold42466 SAMTools SNP 9225 9225 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42466 SAMTools SNP 9502 9502 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold42466 SAMTools SNP 10665 10665 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0079%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C130:61 scaffold42466 SAMTools SNP 14449 14449 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42466 SAMTools SNP 14467 14467 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold42466 SAMTools SNP 14480 14480 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold42466 SAMTools SNP 15105 15105 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold42466 SAMTools SNP 15315 15315 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C0.44%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold42466 SAMTools SNP 15680 15680 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C107:99 scaffold42466 SAMTools SNP 15738 15738 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42466 SAMTools SNP 15776 15776 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42466 SAMTools SNP 16199 16199 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold42466 SAMTools SNP 16211 16211 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold42466 SAMTools SNP 16796 16796 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold42466 SAMTools SNP 17530 17530 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold42466 SAMTools SNP 17538 17538 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold42466 SAMTools SNP 17746 17746 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold42466 SAMTools SNP 17781 17781 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42466 SAMTools SNP 17812 17812 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42466 SAMTools SNP 17862 17862 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42466 SAMTools SNP 18125 18125 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 18589 18589 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42466 SAMTools SNP 18903 18903 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42466 SAMTools SNP 19227 19227 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold42466 SAMTools SNP 19703 19703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.38%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold42466 SAMTools SNP 19717 19717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42466 SAMTools SNP 21129 21129 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42466 SAMTools SNP 24063 24063 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C73%3BMQ%3D50%3BFQ%3D-159%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C132%2C0:99 scaffold42466 SAMTools SNP 24176 24176 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42466 SAMTools SNP 24450 24450 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C216:99 scaffold42466 SAMTools SNP 26724 26724 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42466 SAMTools SNP 26909 26909 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42466 SAMTools SNP 30974 30974 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42466 SAMTools SNP 31781 31781 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.38%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 34993 34993 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.12%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42466 SAMTools SNP 35050 35050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C12%2C100%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.013%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 36568 36568 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C185%2C6%2C53%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.085%2C7.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42466 SAMTools SNP 36628 36628 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.66%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42466 SAMTools SNP 39675 39675 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C65%2C93%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 39938 39938 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42466 SAMTools SNP 40305 40305 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C19%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.053%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42466 SAMTools SNP 40502 40502 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C0.0062%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold42466 SAMTools SNP 41036 41036 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42466 SAMTools SNP 41290 41290 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42466 SAMTools SNP 41352 41352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42466 SAMTools SNP 41380 41380 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42466 SAMTools SNP 41656 41656 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42466 SAMTools SNP 41863 41863 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 42835 42835 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42466 SAMTools SNP 42865 42865 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42466 SAMTools SNP 43195 43195 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C21%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold42466 SAMTools SNP 43213 43213 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C24%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold42466 SAMTools SNP 50036 50036 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.23%2C1.1e-09%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42466 SAMTools SNP 50387 50387 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold42466 SAMTools SNP 52102 52102 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.6%2C3.9e-21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42466 SAMTools SNP 52402 52402 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42466 SAMTools SNP 53244 53244 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C48%2C0:93 scaffold42466 SAMTools SNP 53324 53324 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C11%2C10%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C4.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42466 SAMTools SNP 63044 63044 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42466 SAMTools SNP 71235 71235 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C12%2C10%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.053%2C0.15%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold42466 SAMTools SNP 72270 72270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 73017 73017 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 73113 73113 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.36%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold42466 SAMTools SNP 73128 73128 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42466 SAMTools SNP 86743 86743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 89477 89477 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.22%2C0.36%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold42466 SAMTools SNP 91680 91680 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C30%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 92247 92247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 94767 94767 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold42466 SAMTools SNP 95216 95216 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C16%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 97217 97217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C40%2C17%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C0.22%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 98154 98154 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C6%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.29%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 98161 98161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42466 SAMTools SNP 101663 101663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42466 SAMTools SNP 104028 104028 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C99%2C1%2C20%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42466 SAMTools SNP 104581 104581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 104588 104588 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 104620 104620 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42466 SAMTools SNP 104663 104663 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C249:94 scaffold42466 SAMTools SNP 106391 106391 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C4.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C184:33 scaffold42466 SAMTools SNP 109811 109811 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.3%2C0.082%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42466 SAMTools SNP 109814 109814 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42466 SAMTools SNP 109874 109874 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 111546 111546 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42466 SAMTools SNP 112565 112565 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.11%2C1.6e-09%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42466 SAMTools SNP 119424 119424 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 119897 119897 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C0%2C15%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0026%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold42466 SAMTools SNP 119942 119942 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42466 SAMTools SNP 119963 119963 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.6%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42466 SAMTools SNP 119984 119984 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42466 SAMTools SNP 119987 119987 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42466 SAMTools SNP 121899 121899 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 121956 121956 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42466 SAMTools SNP 123184 123184 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42466 SAMTools SNP 125222 125222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C2%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 125351 125351 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42466 SAMTools SNP 128153 128153 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 128401 128401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C28%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 129494 129494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C54%2C23%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 129612 129612 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C53%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C160%2C0:99 scaffold42466 SAMTools SNP 130267 130267 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C90%2C0:99 scaffold42466 SAMTools SNP 130340 130340 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D1%2C6.5e-07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C121:99 scaffold42466 SAMTools SNP 130536 130536 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C213:99 scaffold42466 SAMTools SNP 130577 130577 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold42466 SAMTools SNP 130893 130893 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.015%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold42466 SAMTools SNP 130899 130899 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.52%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42466 SAMTools SNP 130995 130995 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42466 SAMTools SNP 132067 132067 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42466 SAMTools SNP 132122 132122 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42466 SAMTools SNP 138529 138529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 138555 138555 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C38%2C18%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D8.3e-08%2C2.8e-11%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42466 SAMTools SNP 138972 138972 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 138986 138986 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C13%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold42466 SAMTools SNP 139855 139855 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42466 SAMTools SNP 140869 140869 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C32%2C8%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5e-05%2C1%2C6.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42466 SAMTools SNP 140983 140983 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C77%2C96%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 141670 141670 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C80%2C97%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 141677 141677 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C36%2C180%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 141749 141749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C174%2C5%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42466 SAMTools SNP 143224 143224 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C137%2C14%2C49%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0014%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold42466 SAMTools SNP 144556 144556 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C74:36 scaffold42466 SAMTools SNP 146022 146022 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C24%2C63%2C21%3BMQ%3D47%3BFQ%3D107%3BPV4%3D0.49%2C9.5e-140%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42466 SAMTools SNP 148566 148566 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold42466 SAMTools SNP 154466 154466 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold42466 SAMTools SNP 154473 154473 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold42466 SAMTools SNP 156333 156333 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42466 SAMTools SNP 156425 156425 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.44%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42466 SAMTools SNP 156426 156426 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.44%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42466 SAMTools SNP 156430 156430 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42466 SAMTools SNP 159583 159583 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold42466 SAMTools SNP 162201 162201 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold42466 SAMTools SNP 163805 163805 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42466 SAMTools SNP 163835 163835 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.11%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42466 SAMTools SNP 163860 163860 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0023%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42466 SAMTools SNP 164494 164494 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42466 SAMTools SNP 164516 164516 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold42466 SAMTools SNP 164797 164797 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold42466 SAMTools SNP 164806 164806 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42466 SAMTools SNP 164821 164821 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold42466 SAMTools SNP 164848 164848 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C182:99 scaffold42466 SAMTools SNP 165303 165303 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42466 SAMTools SNP 165321 165321 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42466 SAMTools SNP 165327 165327 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42466 SAMTools SNP 165654 165654 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42486 SAMTools SNP 3058 3058 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 3408 3408 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold42486 SAMTools SNP 3984 3984 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold42486 SAMTools SNP 4083 4083 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C112:77 scaffold42486 SAMTools SNP 5560 5560 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42486 SAMTools SNP 12429 12429 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold42486 SAMTools SNP 12810 12810 71.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold42486 SAMTools SNP 12894 12894 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C36%2C0:69 scaffold42486 SAMTools SNP 13499 13499 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C5.2e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C54:57 scaffold42486 SAMTools SNP 13676 13676 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42486 SAMTools SNP 13754 13754 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42486 SAMTools SNP 14602 14602 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold42486 SAMTools SNP 14641 14641 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C239:99 scaffold42486 SAMTools SNP 15216 15216 45.1 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C195%2C177%2C225%2C0%2C210:33 scaffold42486 SAMTools SNP 15306 15306 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42486 SAMTools SNP 15315 15315 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42486 SAMTools SNP 15756 15756 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.17%2C0.14%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C223:93 scaffold42486 SAMTools SNP 16876 16876 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42486 SAMTools SNP 17427 17427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 17890 17890 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 17989 17989 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold42486 SAMTools SNP 18046 18046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 18060 18060 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 21601 21601 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.47%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42486 SAMTools SNP 21613 21613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42486 SAMTools SNP 21664 21664 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 24609 24609 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42486 SAMTools SNP 24675 24675 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C36%2C0:69 scaffold42486 SAMTools SNP 28963 28963 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C1%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold42486 SAMTools SNP 29822 29822 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42486 SAMTools SNP 29837 29837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42486 SAMTools SNP 30572 30572 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42486 SAMTools SNP 30593 30593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42486 SAMTools SNP 31304 31304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C28%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 31686 31686 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C40%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold42486 SAMTools SNP 31821 31821 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42486 SAMTools SNP 32694 32694 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 32707 32707 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42486 SAMTools SNP 32976 32976 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42486 SAMTools SNP 32988 32988 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42486 SAMTools SNP 32991 32991 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42486 SAMTools SNP 33273 33273 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42486 SAMTools SNP 33285 33285 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42486 SAMTools SNP 34368 34368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42486 SAMTools SNP 34409 34409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.014%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold42486 SAMTools SNP 34419 34419 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C16%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0003%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42486 SAMTools SNP 36052 36052 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C7%2C9%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.073%2C3.9e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42486 SAMTools SNP 36145 36145 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold42486 SAMTools SNP 36656 36656 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42486 SAMTools SNP 36725 36725 50.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold42486 SAMTools SNP 37036 37036 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 37093 37093 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 37105 37105 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 37675 37675 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 47971 47971 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42486 SAMTools SNP 47991 47991 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42486 SAMTools SNP 48332 48332 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42486 SAMTools SNP 48407 48407 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C2%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.015%2C0.073%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C231:88 scaffold42486 SAMTools SNP 48413 48413 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C2%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.023%2C0.011%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C229:87 scaffold42486 SAMTools SNP 48847 48847 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.011%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold42486 SAMTools SNP 49010 49010 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold42486 SAMTools SNP 51108 51108 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C6.1e-88%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C227:36 scaffold42486 SAMTools SNP 51279 51279 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold42486 SAMTools SNP 51281 51281 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C134:36 scaffold42486 SAMTools SNP 51288 51288 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C1%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 51303 51303 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C25%2C3%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.0041%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42486 SAMTools SNP 51336 51336 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C69%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 52556 52556 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C50%2C39%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 52589 52589 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 52601 52601 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 52610 52610 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C37%2C0%2C11%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.33%2C1.2e-06%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold42486 SAMTools SNP 53140 53140 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold42486 SAMTools SNP 53284 53284 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C31%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold42486 SAMTools SNP 55651 55651 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 55690 55690 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42486 SAMTools SNP 56036 56036 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42486 SAMTools SNP 58477 58477 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C71:48 scaffold42486 SAMTools SNP 58627 58627 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C247%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 58642 58642 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D856%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C765%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 58980 58980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D912%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C477%2C26%2C235%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 59261 59261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D607%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C342%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 59657 59657 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C77%2C60%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 59684 59684 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C83%2C25%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.067%2C1%2C1%2C6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold42486 SAMTools SNP 59939 59939 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C118%2C56%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.6e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 59993 59993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1054%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C633%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 60011 60011 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1037%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D397%2C162%2C268%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 60256 60256 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D981%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C279%2C548%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 60651 60651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C453%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 60669 60669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C251%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 61107 61107 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C8.9e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C221:63 scaffold42486 SAMTools SNP 61445 61445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42486 SAMTools SNP 61454 61454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42486 SAMTools SNP 62089 62089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C70%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold42486 SAMTools SNP 62105 62105 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C57%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42486 SAMTools SNP 62275 62275 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 62311 62311 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42486 SAMTools SNP 62386 62386 94.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C15%2C0:27 scaffold42486 SAMTools SNP 62389 62389 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C18%2C0:33 scaffold42486 SAMTools SNP 62740 62740 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.27%2C2.2e-05%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42486 SAMTools SNP 63113 63113 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 63152 63152 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 63182 63182 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 63609 63609 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42486 SAMTools SNP 63612 63612 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 63699 63699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42486 SAMTools SNP 63744 63744 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42486 SAMTools SNP 64193 64193 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42486 SAMTools SNP 64229 64229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42486 SAMTools SNP 64736 64736 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold42486 SAMTools SNP 65267 65267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C42%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold42486 SAMTools SNP 65324 65324 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 65354 65354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42486 SAMTools SNP 65396 65396 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 65755 65755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 65762 65762 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C218:79 scaffold42486 SAMTools SNP 65779 65779 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42486 SAMTools SNP 65809 65809 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42486 SAMTools SNP 66119 66119 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold42486 SAMTools SNP 66161 66161 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.077%2C0.03%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42486 SAMTools SNP 66496 66496 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42486 SAMTools SNP 66502 66502 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42486 SAMTools SNP 67539 67539 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 67551 67551 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 67758 67758 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42486 SAMTools SNP 67803 67803 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42486 SAMTools SNP 68130 68130 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42486 SAMTools SNP 68202 68202 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42486 SAMTools SNP 68214 68214 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42486 SAMTools SNP 68627 68627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42486 SAMTools SNP 68648 68648 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42486 SAMTools SNP 69152 69152 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42486 SAMTools SNP 69417 69417 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.49%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42486 SAMTools SNP 69454 69454 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.39%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 69837 69837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42486 SAMTools SNP 70052 70052 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 70076 70076 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C232:99 scaffold42486 SAMTools SNP 70100 70100 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.16%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 71634 71634 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42486 SAMTools SNP 71661 71661 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 72128 72128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42486 SAMTools SNP 72194 72194 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.45%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42486 SAMTools SNP 72726 72726 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C13%2C12%2C2%3BMQ%3D49%3BFQ%3D170%3BPV4%3D0.72%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42486 SAMTools SNP 72750 72750 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C11%2C12%2C2%3BMQ%3D49%3BFQ%3D175%3BPV4%3D0.72%2C1%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42486 SAMTools SNP 72802 72802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42486 SAMTools SNP 72804 72804 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C30%3BMQ%3D48%3BFQ%3D83%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold42486 SAMTools SNP 73359 73359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42486 SAMTools SNP 73368 73368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 73644 73644 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C68%2C63%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-05%2C0.46%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 74182 74182 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 74488 74488 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C16%2C7%2C0%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D4.1e-06%2C2.5e-16%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C236:37 scaffold42486 SAMTools SNP 74513 74513 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C45%2C0:87 scaffold42486 SAMTools SNP 74539 74539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C32%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D6.1e-07%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C153:99 scaffold42486 SAMTools SNP 74959 74959 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C0.19%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold42486 SAMTools SNP 74965 74965 222 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0%2C255%2C64%2C254:99 scaffold42486 SAMTools SNP 75085 75085 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42486 SAMTools SNP 75498 75498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42486 SAMTools SNP 75506 75506 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42486 SAMTools SNP 75605 75605 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42486 SAMTools SNP 75629 75629 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.016%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold42486 SAMTools SNP 76450 76450 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 76472 76472 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42486 SAMTools SNP 77012 77012 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C29%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42486 SAMTools SNP 77093 77093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42486 SAMTools SNP 77453 77453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D123%3BPV4%3D4.3e-05%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold42486 SAMTools SNP 77459 77459 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D9.3e-05%2C2.6e-05%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42486 SAMTools SNP 77501 77501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C24%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42486 SAMTools SNP 77531 77531 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D113%3BPV4%3D4.9e-06%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42486 SAMTools SNP 77847 77847 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C4%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42486 SAMTools SNP 77865 77865 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42486 SAMTools SNP 77898 77898 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42486 SAMTools SNP 77961 77961 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C30%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C155:99 scaffold42486 SAMTools SNP 78104 78104 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C232:99 scaffold42486 SAMTools SNP 78149 78149 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42486 SAMTools SNP 79802 79802 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.024%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42486 SAMTools SNP 79805 79805 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.087%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42486 SAMTools SNP 79847 79847 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1.4e-10%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 80357 80357 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-12%2C0.00058%2C1%2C1.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 80510 80510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C8%2C40%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 80531 80531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C10%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 80933 80933 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C13%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.47%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C229:99 scaffold42486 SAMTools SNP 80972 80972 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C225:99 scaffold42486 SAMTools SNP 81408 81408 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42486 SAMTools SNP 81450 81450 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42486 SAMTools SNP 81468 81468 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42486 SAMTools SNP 82212 82212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42486 SAMTools SNP 82512 82512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42486 SAMTools SNP 82587 82587 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C85:63 scaffold42486 SAMTools SNP 83344 83344 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 83384 83384 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold42486 SAMTools SNP 83705 83705 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 83750 83750 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42486 SAMTools SNP 83789 83789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42486 SAMTools SNP 84200 84200 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C7%2C68%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 84557 84557 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C134%2C1%2C62%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.027%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold42486 SAMTools SNP 84625 84625 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 84983 84983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 85007 85007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 85395 85395 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 85549 85549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C91%2C3%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 85648 85648 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C4%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42486 SAMTools SNP 85675 85675 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42486 SAMTools SNP 85916 85916 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42486 SAMTools SNP 85934 85934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42486 SAMTools SNP 86535 86535 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42486 SAMTools SNP 86861 86861 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C46%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42486 SAMTools SNP 86877 86877 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 87334 87334 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.28%2C0.48%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42486 SAMTools SNP 87337 87337 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0250%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.46%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42486 SAMTools SNP 87382 87382 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C25:28 scaffold42486 SAMTools SNP 87403 87403 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1.2e-05%2C0.083%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C226:99 scaffold42486 SAMTools SNP 87412 87412 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42486 SAMTools SNP 87851 87851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C6%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold42486 SAMTools SNP 88291 88291 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C57%2C26%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D0.32%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold42486 SAMTools SNP 88825 88825 12.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold42486 SAMTools SNP 91933 91933 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold42486 SAMTools SNP 92066 92066 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold42486 SAMTools SNP 92169 92169 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C80%2C0%3BMQ%3D49%3BFQ%3D108%3BPV4%3D1%2C4.3e-48%2C0.078%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C241:99 scaffold42486 SAMTools SNP 92224 92224 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C17%2C47%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C0.45%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 92256 92256 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C37%2C55%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 92572 92572 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C149%2C19%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C0.021%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 92748 92748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C99%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.27%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 92824 92824 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C31%2C9%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold42486 SAMTools SNP 93958 93958 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C34%2C20%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1.3e-10%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold42486 SAMTools SNP 94002 94002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42486 SAMTools SNP 94006 94006 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C111%2C0:99 scaffold42486 SAMTools SNP 94309 94309 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C255%2C0:99 scaffold42486 SAMTools SNP 94965 94965 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C41%2C37%2C61%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.43%2C1.2e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42486 SAMTools SNP 95220 95220 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C44%2C51%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00025%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 97999 97999 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C73%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C255%2C0:96 scaffold42486 SAMTools SNP 100781 100781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 100800 100800 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 104276 104276 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C31%2C40%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.42%2C1.9e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42486 SAMTools SNP 104474 104474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C50%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42486 SAMTools SNP 108504 108504 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C56%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 112659 112659 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C227:66 scaffold42486 SAMTools SNP 112660 112660 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42486 SAMTools SNP 112717 112717 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold42486 SAMTools SNP 112900 112900 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold42486 SAMTools SNP 115816 115816 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C133%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.077%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 115894 115894 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C61%2C7%2C28%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.047%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 118573 118573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 120167 120167 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42486 SAMTools SNP 120168 120168 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42486 SAMTools SNP 122363 122363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42486 SAMTools SNP 123496 123496 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C59%2C72%2C57%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.4%2C9.5e-166%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42486 SAMTools SNP 123878 123878 188 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C54%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C196%2C0%2C213%2C170%2C210:99 scaffold42486 SAMTools SNP 124837 124837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C293%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42486 SAMTools SNP 127639 127639 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C8.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold42486 SAMTools SNP 130578 130578 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C14%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D6.7e-09%2C1.7e-09%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42486 SAMTools SNP 130915 130915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C224%2C6%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-07%2C3.6e-152%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 130958 130958 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C119%2C6%2C98%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.00094%2C1.2e-166%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42486 SAMTools SNP 131047 131047 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C43%2C45%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D2.5e-10%2C4.4e-96%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42486 SAMTools SNP 131401 131401 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C8.3e-30%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42486 SAMTools SNP 132034 132034 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C62%2C35%2C18%3BMQ%3D50%3BFQ%3D114%3BPV4%3D5.9e-05%2C7.2e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42486 SAMTools SNP 141741 141741 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42486 SAMTools SNP 145214 145214 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42486 SAMTools SNP 145256 145256 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42486 SAMTools SNP 151243 151243 31.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold42486 SAMTools SNP 151301 151301 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42486 SAMTools SNP 151680 151680 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42490 SAMTools SNP 9850 9850 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42490 SAMTools SNP 9941 9941 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42490 SAMTools SNP 81870 81870 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42490 SAMTools SNP 82236 82236 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.47%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold42490 SAMTools SNP 82255 82255 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold42490 SAMTools SNP 83427 83427 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42490 SAMTools SNP 83433 83433 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42490 SAMTools SNP 83459 83459 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42490 SAMTools SNP 83499 83499 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.39%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C17:20 scaffold42490 SAMTools SNP 83501 83501 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C228:99 scaffold42490 SAMTools SNP 83520 83520 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C241:99 scaffold42490 SAMTools SNP 83872 83872 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C20%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold42490 SAMTools SNP 83881 83881 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold42490 SAMTools SNP 83888 83888 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42490 SAMTools SNP 84048 84048 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42490 SAMTools SNP 85609 85609 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42490 SAMTools SNP 86006 86006 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold42490 SAMTools SNP 86117 86117 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42490 SAMTools SNP 86494 86494 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0014%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C209:99 scaffold42490 SAMTools SNP 89849 89849 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold42490 SAMTools SNP 90503 90503 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold42490 SAMTools SNP 90944 90944 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold42490 SAMTools SNP 91320 91320 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.29%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold42490 SAMTools SNP 91390 91390 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 92366 92366 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 92697 92697 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 92706 92706 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.00016%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 92709 92709 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 92770 92770 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold42490 SAMTools SNP 93370 93370 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D23%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42490 SAMTools SNP 93672 93672 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold42490 SAMTools SNP 124434 124434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C5%2C9%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 124448 124448 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C7%2C11%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 139481 139481 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C38%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 143805 143805 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0028%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold42490 SAMTools SNP 148911 148911 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42490 SAMTools SNP 149970 149970 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42490 SAMTools SNP 150396 150396 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42490 SAMTools SNP 150720 150720 15.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D1%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C5%2C0:8 scaffold42490 SAMTools SNP 151330 151330 64.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold42490 SAMTools SNP 151367 151367 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D33%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C109:34 scaffold42490 SAMTools SNP 152459 152459 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold42490 SAMTools SNP 152468 152468 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold42490 SAMTools SNP 154680 154680 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C4%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold42490 SAMTools SNP 155323 155323 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C37%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 155497 155497 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42490 SAMTools SNP 155680 155680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold42490 SAMTools SNP 155701 155701 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold42490 SAMTools SNP 156809 156809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42490 SAMTools SNP 157061 157061 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42490 SAMTools SNP 157824 157824 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C2%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42490 SAMTools SNP 157873 157873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C36%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42490 SAMTools SNP 168026 168026 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C160:28 scaffold425 SAMTools SNP 3685 3685 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 4074 4074 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 4149 4149 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 4159 4159 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold425 SAMTools SNP 4200 4200 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 7059 7059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.52%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold425 SAMTools SNP 7223 7223 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 7226 7226 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 8016 8016 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C202:69 scaffold425 SAMTools SNP 8048 8048 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C157:72 scaffold425 SAMTools SNP 8560 8560 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C216:66 scaffold425 SAMTools SNP 11983 11983 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 12892 12892 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 13470 13470 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold425 SAMTools SNP 13481 13481 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold425 SAMTools SNP 64019 64019 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C45%2C0:87 scaffold425 SAMTools SNP 64073 64073 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C126%2C0:99 scaffold425 SAMTools SNP 64499 64499 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 64507 64507 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 64531 64531 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold425 SAMTools SNP 64538 64538 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold425 SAMTools SNP 65505 65505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C58%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 132785 132785 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold425 SAMTools SNP 132815 132815 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.091%2C7.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold425 SAMTools SNP 132976 132976 43.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold425 SAMTools SNP 133032 133032 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C41:44 scaffold425 SAMTools SNP 143796 143796 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 143804 143804 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 163670 163670 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold425 SAMTools SNP 163698 163698 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold425 SAMTools SNP 180121 180121 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold425 SAMTools SNP 217435 217435 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D44%3BFQ%3D39%3BPV4%3D0.17%2C7.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C160:69 scaffold425 SAMTools SNP 233502 233502 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.44%2C1%2C2.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C121:99 scaffold425 SAMTools SNP 233515 233515 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C121:99 scaffold425 SAMTools SNP 241436 241436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 241448 241448 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 322537 322537 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C2e-32%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C230:99 scaffold425 SAMTools SNP 322871 322871 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C86:34 scaffold425 SAMTools SNP 323289 323289 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C27%2C0:47 scaffold425 SAMTools SNP 323566 323566 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold425 SAMTools SNP 323763 323763 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold425 SAMTools SNP 328399 328399 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold425 SAMTools SNP 328724 328724 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C200:49 scaffold425 SAMTools SNP 339485 339485 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold425 SAMTools SNP 371360 371360 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold425 SAMTools SNP 371602 371602 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold425 SAMTools SNP 371620 371620 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold425 SAMTools SNP 462152 462152 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold425 SAMTools SNP 525108 525108 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold425 SAMTools SNP 525118 525118 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C126:80 scaffold425 SAMTools SNP 652127 652127 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold425 SAMTools SNP 700482 700482 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 700785 700785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 711607 711607 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold425 SAMTools SNP 711917 711917 34.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold425 SAMTools SNP 737545 737545 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C19%3BMQ%3D43%3BFQ%3D-11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C16:19 scaffold425 SAMTools SNP 737996 737996 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 740975 740975 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.24%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C112:99 scaffold425 SAMTools SNP 741417 741417 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold425 SAMTools SNP 741506 741506 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.031%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C219:90 scaffold425 SAMTools SNP 741983 741983 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold425 SAMTools SNP 742004 742004 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold425 SAMTools SNP 744042 744042 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold425 SAMTools SNP 744432 744432 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 744482 744482 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.11%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold425 SAMTools SNP 744531 744531 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold425 SAMTools SNP 744534 744534 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.52%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold425 SAMTools SNP 744602 744602 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 745384 745384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 745408 745408 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold425 SAMTools SNP 745529 745529 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.07%2C0.068%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold425 SAMTools SNP 745544 745544 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold425 SAMTools SNP 747429 747429 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold425 SAMTools SNP 747441 747441 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold425 SAMTools SNP 748569 748569 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold425 SAMTools SNP 749300 749300 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 750426 750426 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 750429 750429 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 751231 751231 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold425 SAMTools SNP 751716 751716 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold425 SAMTools SNP 751779 751779 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold425 SAMTools SNP 752286 752286 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold425 SAMTools SNP 752311 752311 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C7%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold425 SAMTools SNP 752895 752895 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 753395 753395 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C42%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold425 SAMTools SNP 756149 756149 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold425 SAMTools SNP 756216 756216 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold425 SAMTools SNP 761212 761212 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C41%2C0%2C8%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold425 SAMTools SNP 765692 765692 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C55%2C2%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.023%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C248:77 scaffold425 SAMTools SNP 765779 765779 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold425 SAMTools SNP 765792 765792 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C4%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold425 SAMTools SNP 766520 766520 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C0.14%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 766751 766751 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C25%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 767034 767034 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C49%2C7%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.39%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold425 SAMTools SNP 778464 778464 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold425 SAMTools SNP 778500 778500 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold425 SAMTools SNP 779101 779101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold425 SAMTools SNP 779153 779153 16.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold425 SAMTools SNP 786004 786004 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold425 SAMTools SNP 786198 786198 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.086%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold425 SAMTools SNP 786218 786218 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold425 SAMTools SNP 786610 786610 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold425 SAMTools SNP 787483 787483 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1534%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D563%2C130%2C699%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1.8e-27%2C1%2C5.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 787501 787501 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1436%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D321%2C469%2C88%2C425%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-20%2C0.12%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 789568 789568 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1164%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C498%2C29%2C565%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00069%2C1%2C1%2C3.8e-69;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 790016 790016 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C74%2C36%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.31%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 790630 790630 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C60%2C85%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 791028 791028 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D643%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C305%2C25%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 791303 791303 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C136%2C143%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.93%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 791688 791688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C25%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold425 SAMTools SNP 791706 791706 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C64%2C8%2C13%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold425 SAMTools SNP 793091 793091 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D635%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C532%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 793121 793121 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D556%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C50%2C269%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.5e-13%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 794487 794487 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 796838 796838 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.29%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold425 SAMTools SNP 798353 798353 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D0.25%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C26%2C0:49 scaffold425 SAMTools SNP 798401 798401 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold425 SAMTools SNP 801794 801794 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold425 SAMTools SNP 801797 801797 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold425 SAMTools SNP 802235 802235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold425 SAMTools SNP 803241 803241 35.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold425 SAMTools SNP 803893 803893 56.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold425 SAMTools SNP 804024 804024 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C188:40 scaffold425 SAMTools SNP 804900 804900 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold425 SAMTools SNP 805301 805301 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold425 SAMTools SNP 810290 810290 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.65%2C5.2e-08%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold425 SAMTools SNP 810751 810751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 812364 812364 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold425 SAMTools SNP 812443 812443 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold425 SAMTools SNP 825739 825739 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold425 SAMTools SNP 825879 825879 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold425 SAMTools SNP 826055 826055 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C10%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C160%2C0:99 scaffold425 SAMTools SNP 827709 827709 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold425 SAMTools SNP 827841 827841 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.13%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold425 SAMTools SNP 828291 828291 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 828424 828424 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.037%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C240:99 scaffold425 SAMTools SNP 828444 828444 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold425 SAMTools SNP 828457 828457 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold425 SAMTools SNP 829001 829001 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold425 SAMTools SNP 829266 829266 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C13%3BMQ%3D41%3BFQ%3D-52%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C25%2C0:47 scaffold425 SAMTools SNP 832977 832977 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C0%2C8%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold425 SAMTools SNP 833214 833214 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.27%2C2.4e-19%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold425 SAMTools SNP 838409 838409 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D39%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C163:93 scaffold425 SAMTools SNP 838544 838544 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D35%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C54%2C0:99 scaffold425 SAMTools SNP 851514 851514 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold425 SAMTools SNP 856300 856300 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold425 SAMTools SNP 856311 856311 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold425 SAMTools SNP 859024 859024 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.028%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold425 SAMTools SNP 859326 859326 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D95.3%3BPV4%3D0.038%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C127:99 scaffold425 SAMTools SNP 859693 859693 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.015%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C233:44 scaffold425 SAMTools SNP 859956 859956 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold425 SAMTools SNP 860030 860030 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold425 SAMTools SNP 860201 860201 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold425 SAMTools SNP 860210 860210 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold425 SAMTools SNP 860214 860214 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold425 SAMTools SNP 860351 860351 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold425 SAMTools SNP 860924 860924 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold425 SAMTools SNP 861235 861235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 861358 861358 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C22%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.7e-20%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C150:71 scaffold425 SAMTools SNP 866378 866378 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold425 SAMTools SNP 866441 866441 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold425 SAMTools SNP 866446 866446 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold425 SAMTools SNP 867212 867212 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C6%2C9%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.022%2C9.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold425 SAMTools SNP 867225 867225 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C11%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.55%2C1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold425 SAMTools SNP 867286 867286 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C27%2C11%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.65%2C2.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold425 SAMTools SNP 868126 868126 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C85%2C7%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D2.4e-06%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold425 SAMTools SNP 868321 868321 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C32%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold425 SAMTools SNP 868375 868375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.62%2C0.22%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold425 SAMTools SNP 869995 869995 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 874998 874998 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C6.9e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold425 SAMTools SNP 875681 875681 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1.1e-06%2C3.8e-07%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold425 SAMTools SNP 876134 876134 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold425 SAMTools SNP 877275 877275 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.69%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold425 SAMTools SNP 878078 878078 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C5%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0059%2C0.0059%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold425 SAMTools SNP 879153 879153 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C24%2C123%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.045%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 880354 880354 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C46%2C13%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C4.2e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 890980 890980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C19%2C149%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 894776 894776 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold425 SAMTools SNP 898131 898131 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold425 SAMTools SNP 899068 899068 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C40%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C196:99 scaffold425 SAMTools SNP 900352 900352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold425 SAMTools SNP 900378 900378 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold425 SAMTools SNP 900547 900547 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.44%2C0.035%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold425 SAMTools SNP 901633 901633 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold425 SAMTools SNP 901647 901647 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D46%3BFQ%3D48%3BPV4%3D0.14%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C75:78 scaffold425 SAMTools SNP 901709 901709 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D35%3BFQ%3D32.8%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C60:63 scaffold425 SAMTools SNP 903781 903781 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold425 SAMTools SNP 906015 906015 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C190:72 scaffold425 SAMTools SNP 909179 909179 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00053%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold425 SAMTools SNP 909351 909351 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold425 SAMTools SNP 909761 909761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold425 SAMTools SNP 910183 910183 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 911013 911013 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 911034 911034 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C19%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.0012%2C0.016%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold425 SAMTools SNP 911457 911457 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0084%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 911488 911488 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold425 SAMTools SNP 911779 911779 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.29%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold425 SAMTools SNP 912139 912139 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.0051%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C217:99 scaffold425 SAMTools SNP 912184 912184 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C0.047%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold425 SAMTools SNP 912502 912502 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold425 SAMTools SNP 912975 912975 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C3%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.0093%2C0.091%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold425 SAMTools SNP 913560 913560 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.62%2C0.4%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold425 SAMTools SNP 913596 913596 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.46%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold425 SAMTools SNP 914102 914102 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.21%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold425 SAMTools SNP 914928 914928 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.21%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold425 SAMTools SNP 916725 916725 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 917923 917923 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C8%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D2.1e-06%2C2.7e-18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold425 SAMTools SNP 922052 922052 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold425 SAMTools SNP 922242 922242 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C39%2C0%2C27%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.00021%2C8.2e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold425 SAMTools SNP 922634 922634 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C207:54 scaffold425 SAMTools SNP 922825 922825 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C63%2C54%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.042%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 924279 924279 35.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold425 SAMTools SNP 925503 925503 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold425 SAMTools SNP 925619 925619 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold425 SAMTools SNP 926676 926676 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.044%2C9.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold425 SAMTools SNP 927108 927108 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold425 SAMTools SNP 927113 927113 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold425 SAMTools SNP 930116 930116 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold425 SAMTools SNP 930131 930131 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold425 SAMTools SNP 931029 931029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold425 SAMTools SNP 931062 931062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold425 SAMTools SNP 933855 933855 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold425 SAMTools SNP 933879 933879 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold425 SAMTools SNP 933934 933934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold425 SAMTools SNP 934726 934726 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C3.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C129:56 scaffold425 SAMTools SNP 939090 939090 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold425 SAMTools SNP 939138 939138 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C7%2C14%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C2.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold425 SAMTools SNP 939620 939620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C13%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 941325 941325 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 942095 942095 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold425 SAMTools SNP 942102 942102 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold425 SAMTools SNP 942137 942137 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 951065 951065 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold425 SAMTools SNP 951302 951302 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold425 SAMTools SNP 952118 952118 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold425 SAMTools SNP 956790 956790 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 956799 956799 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 958931 958931 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold425 SAMTools SNP 959064 959064 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold425 SAMTools SNP 959331 959331 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 959923 959923 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold425 SAMTools SNP 960051 960051 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold425 SAMTools SNP 960350 960350 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold425 SAMTools SNP 960562 960562 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 960568 960568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold425 SAMTools SNP 960780 960780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold425 SAMTools SNP 963925 963925 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold425 SAMTools SNP 964090 964090 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold425 SAMTools SNP 964295 964295 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0109%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold425 SAMTools SNP 964443 964443 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 968953 968953 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 973030 973030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C14%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold425 SAMTools SNP 973526 973526 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D819%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.43%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C30:33 scaffold425 SAMTools SNP 973787 973787 119 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D575%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C33%2C0%2C143%2C14%2C140:63 scaffold425 SAMTools SNP 975365 975365 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold425 SAMTools SNP 975431 975431 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.035%2C0.0016%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold425 SAMTools SNP 976440 976440 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold425 SAMTools SNP 976686 976686 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold425 SAMTools SNP 976720 976720 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold425 SAMTools SNP 976873 976873 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold425 SAMTools SNP 977045 977045 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold425 SAMTools SNP 977138 977138 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold425 SAMTools SNP 977169 977169 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold425 SAMTools SNP 977521 977521 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 977601 977601 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold425 SAMTools SNP 977631 977631 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold425 SAMTools SNP 978255 978255 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold425 SAMTools SNP 978402 978402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold425 SAMTools SNP 979481 979481 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold425 SAMTools SNP 979771 979771 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold425 SAMTools SNP 979829 979829 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold425 SAMTools SNP 979844 979844 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C181:99 scaffold425 SAMTools SNP 980076 980076 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold425 SAMTools SNP 980498 980498 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold425 SAMTools SNP 980604 980604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold425 SAMTools SNP 980937 980937 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold425 SAMTools SNP 981507 981507 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold425 SAMTools SNP 983885 983885 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 983921 983921 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold425 SAMTools SNP 984023 984023 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold425 SAMTools SNP 987261 987261 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C74:77 scaffold425 SAMTools SNP 987683 987683 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D87.6%3BPV4%3D0.23%2C0.00026%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C116:99 scaffold425 SAMTools SNP 987948 987948 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold425 SAMTools SNP 988004 988004 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C0.16%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C112:31 scaffold425 SAMTools SNP 988478 988478 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 989917 989917 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold425 SAMTools SNP 990287 990287 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold425 SAMTools SNP 991023 991023 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold425 SAMTools SNP 991079 991079 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold425 SAMTools SNP 991095 991095 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold425 SAMTools SNP 991476 991476 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold425 SAMTools SNP 991508 991508 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold425 SAMTools SNP 991629 991629 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 993495 993495 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 993902 993902 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C26:29 scaffold425 SAMTools SNP 993986 993986 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C36%2C0:69 scaffold425 SAMTools SNP 994103 994103 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold425 SAMTools SNP 995326 995326 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C35:38 scaffold425 SAMTools SNP 995628 995628 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold425 SAMTools SNP 996168 996168 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold425 SAMTools SNP 996180 996180 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold425 SAMTools SNP 996296 996296 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold425 SAMTools SNP 996726 996726 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold425 SAMTools SNP 1009463 1009463 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C12%2C7%2C2%3BMQ%3D49%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold425 SAMTools SNP 1011215 1011215 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C11%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.67%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold425 SAMTools SNP 1012285 1012285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C53%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1012298 1012298 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C71%2C5%2C23%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.017%2C0.00098%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold425 SAMTools SNP 1012711 1012711 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.16%2C0.018%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold425 SAMTools SNP 1013446 1013446 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C91%2C46%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1013648 1013648 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C11%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C3.7e-12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1013851 1013851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C48%2C23%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1014129 1014129 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C57%2C15%2C27%3BMQ%3D50%3BFQ%3D207%3BPV4%3D8.6e-05%2C1%2C1%2C2.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold425 SAMTools SNP 1014526 1014526 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1014596 1014596 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C56%2C43%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.00087%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1015493 1015493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold425 SAMTools SNP 1016536 1016536 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1016545 1016545 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1016560 1016560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.018%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1016980 1016980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1016986 1016986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold425 SAMTools SNP 1018151 1018151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C20%2C55%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1018611 1018611 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1019920 1019920 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.089%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold425 SAMTools SNP 1020226 1020226 99.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold425 SAMTools SNP 1020256 1020256 123 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C54%2C0%2C143%2C28%2C140:99 scaffold425 SAMTools SNP 1020274 1020274 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C57%2C0:99 scaffold425 SAMTools SNP 1020547 1020547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold425 SAMTools SNP 1020610 1020610 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.082%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1020927 1020927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C9.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1021492 1021492 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C36%2C16%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D8.1e-06%2C2.3e-12%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold425 SAMTools SNP 1022055 1022055 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C36%2C21%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.022%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold425 SAMTools SNP 1023893 1023893 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C4.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1024705 1024705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C78%2C6%3BMQ%3D50%3BFQ%3D-233%3BPV4%3D1%2C0.48%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C0:99 scaffold425 SAMTools SNP 1024735 1024735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold425 SAMTools SNP 1025147 1025147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C36%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.44%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1025531 1025531 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C63%2C30%3BMQ%3D50%3BFQ%3D-250%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold425 SAMTools SNP 1026904 1026904 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C53%2C26%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C9.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1026916 1026916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1029471 1029471 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C26%2C29%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1029543 1029543 59.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold425 SAMTools SNP 1034614 1034614 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C36%2C0:64 scaffold425 SAMTools SNP 1034779 1034779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C42%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold425 SAMTools SNP 1035254 1035254 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold425 SAMTools SNP 1035367 1035367 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C9.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C74:37 scaffold425 SAMTools SNP 1036719 1036719 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold425 SAMTools SNP 1036755 1036755 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C36%2C0:69 scaffold425 SAMTools SNP 1037588 1037588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1037633 1037633 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C209%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold425 SAMTools SNP 1038543 1038543 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C255%2C0:99 scaffold425 SAMTools SNP 1046731 1046731 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C0%3BMQ%3D46%3BFQ%3D46%3BPV4%3D0.087%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold425 SAMTools SNP 1046743 1046743 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D45%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold425 SAMTools SNP 1046765 1046765 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold425 SAMTools SNP 1048731 1048731 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C60%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold425 SAMTools SNP 1049112 1049112 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold425 SAMTools SNP 1049136 1049136 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold425 SAMTools SNP 1049148 1049148 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold425 SAMTools SNP 1049150 1049150 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold425 SAMTools SNP 1049544 1049544 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold425 SAMTools SNP 1049990 1049990 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold425 SAMTools SNP 1052708 1052708 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D0.2%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold425 SAMTools SNP 1053159 1053159 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C241:99 scaffold425 SAMTools SNP 1053281 1053281 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold425 SAMTools SNP 1070595 1070595 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold425 SAMTools SNP 1072674 1072674 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold425 SAMTools SNP 1072691 1072691 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold425 SAMTools SNP 1073051 1073051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C6%2C34%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold425 SAMTools SNP 1073259 1073259 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.006%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold425 SAMTools SNP 1074990 1074990 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold42508 SAMTools SNP 2597 2597 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 2655 2655 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42508 SAMTools SNP 3133 3133 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42508 SAMTools SNP 3205 3205 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.62%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C38:34 scaffold42508 SAMTools SNP 3382 3382 54.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold42508 SAMTools SNP 3856 3856 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.71%2C1.5e-20%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42508 SAMTools SNP 4003 4003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C21%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42508 SAMTools SNP 4054 4054 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C2%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42508 SAMTools SNP 4259 4259 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42508 SAMTools SNP 4328 4328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold42508 SAMTools SNP 4373 4373 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.27%2C0.16%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold42508 SAMTools SNP 4708 4708 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42508 SAMTools SNP 4931 4931 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42508 SAMTools SNP 5581 5581 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42508 SAMTools SNP 6132 6132 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42508 SAMTools SNP 6330 6330 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42508 SAMTools SNP 6389 6389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42508 SAMTools SNP 6527 6527 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C197:99 scaffold42508 SAMTools SNP 6593 6593 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42508 SAMTools SNP 6641 6641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42508 SAMTools SNP 6821 6821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 6825 6825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42508 SAMTools SNP 7807 7807 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.47%2C7.8e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42508 SAMTools SNP 8603 8603 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 8942 8942 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0114%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C223:28 scaffold42508 SAMTools SNP 9055 9055 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C42%2C0:81 scaffold42508 SAMTools SNP 9274 9274 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42508 SAMTools SNP 9376 9376 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold42508 SAMTools SNP 9578 9578 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C221:99 scaffold42508 SAMTools SNP 9791 9791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42508 SAMTools SNP 9803 9803 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42508 SAMTools SNP 9822 9822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42508 SAMTools SNP 10253 10253 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C29%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 11221 11221 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D41%3BFQ%3D71%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C190:99 scaffold42508 SAMTools SNP 14053 14053 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42508 SAMTools SNP 14055 14055 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold42508 SAMTools SNP 14702 14702 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42508 SAMTools SNP 14738 14738 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold42508 SAMTools SNP 14785 14785 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42508 SAMTools SNP 15116 15116 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42508 SAMTools SNP 15335 15335 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.062%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C124:99 scaffold42508 SAMTools SNP 18356 18356 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C0.013%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42508 SAMTools SNP 18358 18358 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.57%2C0.013%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold42508 SAMTools SNP 18376 18376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold42508 SAMTools SNP 18409 18409 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 18654 18654 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C2.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold42508 SAMTools SNP 19571 19571 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 19702 19702 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 20112 20112 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 20202 20202 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42508 SAMTools SNP 21321 21321 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C177:63 scaffold42508 SAMTools SNP 22015 22015 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C27%2C0:51 scaffold42508 SAMTools SNP 22039 22039 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C33%2C0:63 scaffold42508 SAMTools SNP 22304 22304 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold42508 SAMTools SNP 23158 23158 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00011%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C77:80 scaffold42508 SAMTools SNP 23866 23866 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold42508 SAMTools SNP 24151 24151 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42508 SAMTools SNP 24186 24186 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D88.7%3BPV4%3D0.33%2C0.059%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C116:99 scaffold42508 SAMTools SNP 25102 25102 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42508 SAMTools SNP 43548 43548 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.42%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 43581 43581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 43821 43821 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold42508 SAMTools SNP 53272 53272 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 53290 53290 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.45%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42508 SAMTools SNP 53316 53316 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.25%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C99:99 scaffold42508 SAMTools SNP 53753 53753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 53791 53791 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 54376 54376 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold42508 SAMTools SNP 54404 54404 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42508 SAMTools SNP 54733 54733 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.22%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42508 SAMTools SNP 54807 54807 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C245:99 scaffold42508 SAMTools SNP 56116 56116 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold42508 SAMTools SNP 56690 56690 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42508 SAMTools SNP 57708 57708 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C0.45%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold42508 SAMTools SNP 62963 62963 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold42508 SAMTools SNP 63047 63047 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold42508 SAMTools SNP 63303 63303 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42508 SAMTools SNP 66449 66449 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42508 SAMTools SNP 68091 68091 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold42508 SAMTools SNP 68915 68915 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42508 SAMTools SNP 68945 68945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42508 SAMTools SNP 72779 72779 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C235:99 scaffold42508 SAMTools SNP 73069 73069 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold42508 SAMTools SNP 75540 75540 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42508 SAMTools SNP 75587 75587 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42508 SAMTools SNP 76054 76054 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 89474 89474 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C27%2C0:51 scaffold42508 SAMTools SNP 89929 89929 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C18%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 90339 90339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0057%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42508 SAMTools SNP 93105 93105 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C51%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42508 SAMTools SNP 93247 93247 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42508 SAMTools SNP 93462 93462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42508 SAMTools SNP 95730 95730 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42508 SAMTools SNP 95840 95840 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C20%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42508 SAMTools SNP 96139 96139 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42508 SAMTools SNP 103200 103200 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42508 SAMTools SNP 104572 104572 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 107428 107428 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42508 SAMTools SNP 107446 107446 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42508 SAMTools SNP 108306 108306 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42508 SAMTools SNP 108339 108339 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42508 SAMTools SNP 108357 108357 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42508 SAMTools SNP 108359 108359 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42508 SAMTools SNP 108674 108674 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42508 SAMTools SNP 109249 109249 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.44%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C148:99 scaffold42508 SAMTools SNP 110691 110691 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold42508 SAMTools SNP 112018 112018 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42508 SAMTools SNP 112420 112420 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42508 SAMTools SNP 112525 112525 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42508 SAMTools SNP 116499 116499 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42508 SAMTools SNP 123665 123665 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42508 SAMTools SNP 123704 123704 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42508 SAMTools SNP 132512 132512 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.23%2C4.2e-08%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C130:99 scaffold42508 SAMTools SNP 132761 132761 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold42508 SAMTools SNP 132905 132905 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 133141 133141 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00018%2C0.38%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42508 SAMTools SNP 133153 133153 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.27%2C0.0035%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42508 SAMTools SNP 133171 133171 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C25%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.025%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42508 SAMTools SNP 133198 133198 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C3%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.01%2C0.4%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C240:99 scaffold42508 SAMTools SNP 133203 133203 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C3%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.01%2C0.44%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C240:99 scaffold42508 SAMTools SNP 133440 133440 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42508 SAMTools SNP 133470 133470 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold42508 SAMTools SNP 133615 133615 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold42508 SAMTools SNP 133633 133633 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42508 SAMTools SNP 133756 133756 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold42508 SAMTools SNP 136148 136148 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 136166 136166 65.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C12%2C0:21 scaffold42508 SAMTools SNP 136232 136232 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold42508 SAMTools SNP 136256 136256 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 136274 136274 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 137045 137045 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 137341 137341 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 137346 137346 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 137530 137530 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 137593 137593 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42508 SAMTools SNP 138012 138012 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42508 SAMTools SNP 138099 138099 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.27%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold42508 SAMTools SNP 138508 138508 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold42508 SAMTools SNP 138571 138571 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42508 SAMTools SNP 138595 138595 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42508 SAMTools SNP 138601 138601 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42508 SAMTools SNP 138622 138622 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.47%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C43:46 scaffold42508 SAMTools SNP 139233 139233 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C230:77 scaffold42508 SAMTools SNP 139398 139398 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C237:94 scaffold42508 SAMTools SNP 139615 139615 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0009%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C185:39 scaffold42508 SAMTools SNP 139961 139961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42508 SAMTools SNP 140300 140300 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold42508 SAMTools SNP 140339 140339 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C32:35 scaffold42508 SAMTools SNP 140874 140874 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.56%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C164:99 scaffold42508 SAMTools SNP 140977 140977 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C75%2C0:99 scaffold42508 SAMTools SNP 141076 141076 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C13%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C8.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42508 SAMTools SNP 141328 141328 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold42508 SAMTools SNP 141383 141383 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C104:44 scaffold42508 SAMTools SNP 141525 141525 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.44%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C192:99 scaffold42508 SAMTools SNP 141556 141556 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42508 SAMTools SNP 141914 141914 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold42508 SAMTools SNP 142913 142913 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42508 SAMTools SNP 143624 143624 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42508 SAMTools SNP 143651 143651 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42508 SAMTools SNP 146339 146339 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.63%2C6.6e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42508 SAMTools SNP 146414 146414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42508 SAMTools SNP 147001 147001 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C11%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.48%2C3.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42508 SAMTools SNP 169412 169412 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42508 SAMTools SNP 169435 169435 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold42516 SAMTools SNP 2599 2599 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 4036 4036 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C25%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C237:99 scaffold42516 SAMTools SNP 4069 4069 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C78%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold42516 SAMTools SNP 4454 4454 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C0%2C16%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C230:99 scaffold42516 SAMTools SNP 4487 4487 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42516 SAMTools SNP 4532 4532 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 4810 4810 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42516 SAMTools SNP 4814 4814 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42516 SAMTools SNP 4870 4870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold42516 SAMTools SNP 4891 4891 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C32%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold42516 SAMTools SNP 5326 5326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C17%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 5464 5464 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C20%2C8%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.13%2C1.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42516 SAMTools SNP 5476 5476 211 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C30%2C0%2C243%2C18%2C240:57 scaffold42516 SAMTools SNP 5837 5837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C14%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42516 SAMTools SNP 6213 6213 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C7%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 6581 6581 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.06%2C0.00086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C210:99 scaffold42516 SAMTools SNP 10211 10211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 10230 10230 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42516 SAMTools SNP 10231 10231 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C184:99 scaffold42516 SAMTools SNP 10294 10294 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.057%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42516 SAMTools SNP 17210 17210 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42516 SAMTools SNP 17854 17854 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42516 SAMTools SNP 22367 22367 20.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C17%3BMQ%3D15%3BFQ%3D-19%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C8:11 scaffold42516 SAMTools SNP 28611 28611 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C48%2C0:93 scaffold42516 SAMTools SNP 37830 37830 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7942%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C4%2C3288%2C2187%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42516 SAMTools SNP 39884 39884 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold42516 SAMTools SNP 40156 40156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4093%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1022%2C1161%2C636%2C594%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 40336 40336 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7686%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C1671%2C30%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42516 SAMTools SNP 40527 40527 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 40529 40529 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 41262 41262 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold42516 SAMTools SNP 41283 41283 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42516 SAMTools SNP 41371 41371 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 41396 41396 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 44280 44280 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold42516 SAMTools SNP 45163 45163 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 45903 45903 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C18%2C63%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 47109 47109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42516 SAMTools SNP 47767 47767 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C61%2C9%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 48792 48792 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42516 SAMTools SNP 48819 48819 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 49209 49209 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 49699 49699 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.27%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42516 SAMTools SNP 50050 50050 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 50062 50062 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.086%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold42516 SAMTools SNP 50191 50191 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42516 SAMTools SNP 50840 50840 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42516 SAMTools SNP 51322 51322 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C17%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 52687 52687 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C31%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42516 SAMTools SNP 52779 52779 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold42516 SAMTools SNP 54598 54598 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42516 SAMTools SNP 55069 55069 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold42516 SAMTools SNP 58756 58756 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold42516 SAMTools SNP 58775 58775 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42516 SAMTools SNP 58870 58870 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C24%2C0:45 scaffold42516 SAMTools SNP 58932 58932 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D34.7%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C62:65 scaffold42516 SAMTools SNP 59520 59520 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42516 SAMTools SNP 59540 59540 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42516 SAMTools SNP 59546 59546 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42516 SAMTools SNP 59628 59628 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42516 SAMTools SNP 60760 60760 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold42516 SAMTools SNP 66284 66284 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C21%2C0:39 scaffold42516 SAMTools SNP 66498 66498 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold42516 SAMTools SNP 66519 66519 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C12:15 scaffold42516 SAMTools SNP 66591 66591 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold42516 SAMTools SNP 67059 67059 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C4.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C190:94 scaffold42516 SAMTools SNP 67161 67161 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C169%2C0:99 scaffold42516 SAMTools SNP 67293 67293 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C25%3BMQ%3D48%3BFQ%3D-68%3BPV4%3D1%2C1%2C0.39%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold42516 SAMTools SNP 68651 68651 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold42516 SAMTools SNP 71475 71475 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold42516 SAMTools SNP 71496 71496 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42516 SAMTools SNP 74773 74773 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42516 SAMTools SNP 74781 74781 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C230:30 scaffold42516 SAMTools SNP 84918 84918 50.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold42516 SAMTools SNP 85528 85528 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42516 SAMTools SNP 85852 85852 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 87260 87260 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42516 SAMTools SNP 87819 87819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42516 SAMTools SNP 87838 87838 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42516 SAMTools SNP 88547 88547 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C137:69 scaffold42516 SAMTools SNP 88568 88568 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42516 SAMTools SNP 88581 88581 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 89691 89691 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold42516 SAMTools SNP 89696 89696 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42516 SAMTools SNP 90874 90874 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 91119 91119 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 91890 91890 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42516 SAMTools SNP 92226 92226 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42516 SAMTools SNP 92238 92238 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 92268 92268 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold42516 SAMTools SNP 92427 92427 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42516 SAMTools SNP 92432 92432 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D0.33%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C76:78 scaffold42516 SAMTools SNP 92443 92443 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42516 SAMTools SNP 92823 92823 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 93338 93338 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0133%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42516 SAMTools SNP 93395 93395 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.14%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold42516 SAMTools SNP 93398 93398 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold42516 SAMTools SNP 95863 95863 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42516 SAMTools SNP 95878 95878 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 95932 95932 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C21%2C0:39 scaffold42516 SAMTools SNP 102485 102485 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 102650 102650 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42516 SAMTools SNP 103038 103038 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42516 SAMTools SNP 105888 105888 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 106886 106886 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 108444 108444 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.57%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C188:40 scaffold42516 SAMTools SNP 109058 109058 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42516 SAMTools SNP 109486 109486 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42516 SAMTools SNP 109492 109492 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42516 SAMTools SNP 109889 109889 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42516 SAMTools SNP 117636 117636 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42516 SAMTools SNP 143099 143099 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C24%2C0:45 scaffold42516 SAMTools SNP 152582 152582 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold42516 SAMTools SNP 152585 152585 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold42516 SAMTools SNP 156042 156042 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42516 SAMTools SNP 157085 157085 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold42516 SAMTools SNP 157244 157244 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.4%2C6.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C74:52 scaffold42518 SAMTools SNP 6746 6746 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 6788 6788 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 6878 6878 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 20826 20826 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C133:99 scaffold42518 SAMTools SNP 21003 21003 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold42518 SAMTools SNP 21026 21026 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold42518 SAMTools SNP 21644 21644 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold42518 SAMTools SNP 21649 21649 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold42518 SAMTools SNP 22963 22963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42518 SAMTools SNP 23711 23711 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold42518 SAMTools SNP 23720 23720 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold42518 SAMTools SNP 24915 24915 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42518 SAMTools SNP 24939 24939 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold42518 SAMTools SNP 24995 24995 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold42518 SAMTools SNP 25447 25447 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42518 SAMTools SNP 25923 25923 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42518 SAMTools SNP 26080 26080 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C143:99 scaffold42518 SAMTools SNP 26105 26105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold42518 SAMTools SNP 27498 27498 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42518 SAMTools SNP 27503 27503 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42518 SAMTools SNP 27526 27526 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C101:99 scaffold42518 SAMTools SNP 28442 28442 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C18%2C0:33 scaffold42518 SAMTools SNP 30056 30056 38.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold42518 SAMTools SNP 34924 34924 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.45%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42518 SAMTools SNP 35706 35706 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.041%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42518 SAMTools SNP 36124 36124 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42518 SAMTools SNP 36150 36150 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42518 SAMTools SNP 37471 37471 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C19%2C12%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-10%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 37502 37502 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C24%2C29%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-05%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 37827 37827 199 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C79%2C24%2C64%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.45%2C3.5e-77%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold42518 SAMTools SNP 37959 37959 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C1%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C2.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 40512 40512 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C56%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 40765 40765 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C13%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D2.3e-08%2C1%2C1%2C1.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42518 SAMTools SNP 40993 40993 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 41021 41021 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.3%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C191:99 scaffold42518 SAMTools SNP 41597 41597 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C62%2C7%2C6%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.037%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold42518 SAMTools SNP 41610 41610 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 41791 41791 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.03%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold42518 SAMTools SNP 42149 42149 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0065%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42518 SAMTools SNP 42518 42518 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0022%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42518 SAMTools SNP 42894 42894 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42518 SAMTools SNP 42917 42917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42518 SAMTools SNP 43434 43434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 43461 43461 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 43931 43931 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 43936 43936 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.25%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 44130 44130 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C28%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 44143 44143 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.2%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold42518 SAMTools SNP 44149 44149 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42518 SAMTools SNP 44522 44522 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.56%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42518 SAMTools SNP 44591 44591 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C23%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 44912 44912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C37%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 44927 44927 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C4%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.3%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 45345 45345 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C62%2C5%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 45362 45362 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C104%2C5%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 45832 45832 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.23%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 45857 45857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 46422 46422 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C5.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 47854 47854 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C12%2C52%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 49354 49354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C36%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42518 SAMTools SNP 49611 49611 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42518 SAMTools SNP 49859 49859 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42518 SAMTools SNP 49933 49933 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.16%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42518 SAMTools SNP 50642 50642 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42518 SAMTools SNP 50656 50656 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 54157 54157 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold42518 SAMTools SNP 61924 61924 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42518 SAMTools SNP 61926 61926 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42518 SAMTools SNP 62592 62592 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42518 SAMTools SNP 63869 63869 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 64915 64915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 64948 64948 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42518 SAMTools SNP 65024 65024 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold42518 SAMTools SNP 65035 65035 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42518 SAMTools SNP 65051 65051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42518 SAMTools SNP 65849 65849 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42518 SAMTools SNP 65975 65975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42518 SAMTools SNP 66263 66263 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.00094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C230:33 scaffold42518 SAMTools SNP 66308 66308 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.038%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42518 SAMTools SNP 66325 66325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42518 SAMTools SNP 66658 66658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42518 SAMTools SNP 66724 66724 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C18%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold42518 SAMTools SNP 66754 66754 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C9%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42518 SAMTools SNP 67762 67762 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C22%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42518 SAMTools SNP 68074 68074 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.13%2C0.012%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42518 SAMTools SNP 68828 68828 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42518 SAMTools SNP 68968 68968 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.01%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42518 SAMTools SNP 69015 69015 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.1%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42518 SAMTools SNP 72067 72067 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C9.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold42518 SAMTools SNP 72201 72201 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42518 SAMTools SNP 76557 76557 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C0%2C20%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.002%2C0.00025%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42518 SAMTools SNP 87167 87167 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42518 SAMTools SNP 90110 90110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42518 SAMTools SNP 91526 91526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42518 SAMTools SNP 93784 93784 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42518 SAMTools SNP 95196 95196 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold42518 SAMTools SNP 96144 96144 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold42518 SAMTools SNP 96166 96166 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42518 SAMTools SNP 99835 99835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C25%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold42518 SAMTools SNP 101016 101016 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C10%2C14%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold42518 SAMTools SNP 101067 101067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 101783 101783 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C11%2C49%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C5.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 102915 102915 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C111%2C0:99 scaffold42518 SAMTools SNP 103639 103639 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42518 SAMTools SNP 103811 103811 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42518 SAMTools SNP 105573 105573 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C51%2C0:99 scaffold42518 SAMTools SNP 105711 105711 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C16%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.9e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42518 SAMTools SNP 105717 105717 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C117%2C0:99 scaffold42518 SAMTools SNP 105965 105965 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold42518 SAMTools SNP 110842 110842 58.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold42518 SAMTools SNP 110851 110851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42518 SAMTools SNP 110869 110869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42518 SAMTools SNP 111318 111318 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1183%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C525%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42518 SAMTools SNP 112200 112200 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 112237 112237 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 112820 112820 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 112970 112970 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42518 SAMTools SNP 113017 113017 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42518 SAMTools SNP 115666 115666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42518 SAMTools SNP 115676 115676 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.27%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42518 SAMTools SNP 119202 119202 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.1%2C0.0028%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C77:54 scaffold42518 SAMTools SNP 119366 119366 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold42518 SAMTools SNP 119427 119427 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.015%2C5.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C171:48 scaffold42518 SAMTools SNP 119533 119533 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C54%2C0:99 scaffold42518 SAMTools SNP 119801 119801 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1.5e-25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 119856 119856 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C29%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C229%2C0:99 scaffold42518 SAMTools SNP 120639 120639 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C43%2C10%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00047%2C0.28%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold42518 SAMTools SNP 126486 126486 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0:63 scaffold42518 SAMTools SNP 128266 128266 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42518 SAMTools SNP 128351 128351 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold42518 SAMTools SNP 129755 129755 57.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0414%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.33%2C0.0033%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C15:18 scaffold42518 SAMTools SNP 130052 130052 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C66%2C0:99 scaffold42518 SAMTools SNP 130619 130619 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42518 SAMTools SNP 130643 130643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42518 SAMTools SNP 130703 130703 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42518 SAMTools SNP 131241 131241 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42518 SAMTools SNP 131647 131647 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.022%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold42518 SAMTools SNP 131731 131731 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42518 SAMTools SNP 131752 131752 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C23%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.12%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42518 SAMTools SNP 131977 131977 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 132151 132151 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C56%2C1%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-05%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 132293 132293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 132523 132523 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C26:29 scaffold42518 SAMTools SNP 132996 132996 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42518 SAMTools SNP 133059 133059 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42518 SAMTools SNP 133251 133251 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42518 SAMTools SNP 133284 133284 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42518 SAMTools SNP 133293 133293 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold42518 SAMTools SNP 133649 133649 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C35%2C13%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.18%2C6.1e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42518 SAMTools SNP 133713 133713 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C54%2C32%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0001%2C1.1e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42518 SAMTools SNP 133927 133927 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42518 SAMTools SNP 133965 133965 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 134414 134414 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C0.092%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 134429 134429 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 134438 134438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.00082%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 134902 134902 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C69%2C0:99 scaffold42518 SAMTools SNP 134989 134989 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42518 SAMTools SNP 135377 135377 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42518 SAMTools SNP 135654 135654 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.33%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42518 SAMTools SNP 135681 135681 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.028%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold42518 SAMTools SNP 135690 135690 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 135696 135696 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42518 SAMTools SNP 136449 136449 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C75%2C0:99 scaffold42518 SAMTools SNP 136527 136527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C9%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D2.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold42518 SAMTools SNP 137053 137053 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42518 SAMTools SNP 137070 137070 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42518 SAMTools SNP 137358 137358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42518 SAMTools SNP 137373 137373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42518 SAMTools SNP 137514 137514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42518 SAMTools SNP 137811 137811 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42518 SAMTools SNP 137850 137850 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42518 SAMTools SNP 137898 137898 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold42518 SAMTools SNP 137910 137910 11.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold42518 SAMTools SNP 138865 138865 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold42518 SAMTools SNP 140652 140652 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42518 SAMTools SNP 141665 141665 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 141683 141683 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 141713 141713 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42518 SAMTools SNP 143122 143122 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42518 SAMTools SNP 143486 143486 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.18%2C0.01%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C252:59 scaffold42518 SAMTools SNP 143503 143503 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42518 SAMTools SNP 144001 144001 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42518 SAMTools SNP 144024 144024 49.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold42518 SAMTools SNP 145740 145740 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42518 SAMTools SNP 145774 145774 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42518 SAMTools SNP 146196 146196 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42518 SAMTools SNP 146217 146217 55.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C26%2C20%2C86%2C0%2C83:10 scaffold42518 SAMTools SNP 147569 147569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.46%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold42518 SAMTools SNP 147733 147733 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C217:53 scaffold42518 SAMTools SNP 147977 147977 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C146:99 scaffold42518 SAMTools SNP 148588 148588 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42518 SAMTools SNP 149116 149116 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold42518 SAMTools SNP 151175 151175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42518 SAMTools SNP 151374 151374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42518 SAMTools SNP 153087 153087 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.26%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold42518 SAMTools SNP 154043 154043 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.15%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C205:61 scaffold42518 SAMTools SNP 154920 154920 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C25%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C126%2C0:99 scaffold42518 SAMTools SNP 154950 154950 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42518 SAMTools SNP 155222 155222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42518 SAMTools SNP 155239 155239 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C16%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D3.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42518 SAMTools SNP 155369 155369 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.031%2C6e-19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C247:73 scaffold42518 SAMTools SNP 155741 155741 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C30%2C0:50 scaffold42518 SAMTools SNP 156044 156044 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42524 SAMTools SNP 504 504 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 510 510 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42524 SAMTools SNP 1250 1250 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.13%2C8.5e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42524 SAMTools SNP 1304 1304 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42524 SAMTools SNP 1682 1682 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42524 SAMTools SNP 1697 1697 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold42524 SAMTools SNP 1709 1709 92.5 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C30%2C18%2C120%2C0%2C117:21 scaffold42524 SAMTools SNP 2406 2406 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 2421 2421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 3227 3227 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42524 SAMTools SNP 3592 3592 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42524 SAMTools SNP 3649 3649 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 3664 3664 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 3898 3898 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 3959 3959 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42524 SAMTools SNP 4325 4325 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C108:36 scaffold42524 SAMTools SNP 4337 4337 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C32:35 scaffold42524 SAMTools SNP 4599 4599 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42524 SAMTools SNP 4632 4632 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 4647 4647 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42524 SAMTools SNP 5206 5206 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 6990 6990 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold42524 SAMTools SNP 7065 7065 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42524 SAMTools SNP 7077 7077 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C73:76 scaffold42524 SAMTools SNP 7585 7585 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold42524 SAMTools SNP 8013 8013 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42524 SAMTools SNP 8680 8680 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 10847 10847 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42524 SAMTools SNP 13563 13563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 13590 13590 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42524 SAMTools SNP 13952 13952 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42524 SAMTools SNP 14509 14509 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 14542 14542 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42524 SAMTools SNP 17108 17108 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.64%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42524 SAMTools SNP 17647 17647 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C19%2C21%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C3.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C33:36 scaffold42524 SAMTools SNP 18236 18236 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold42524 SAMTools SNP 18272 18272 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00012%2C2.1e-20%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42524 SAMTools SNP 18341 18341 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.011%2C6.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42524 SAMTools SNP 18714 18714 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42524 SAMTools SNP 18896 18896 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42524 SAMTools SNP 18900 18900 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42524 SAMTools SNP 19321 19321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42524 SAMTools SNP 19327 19327 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42524 SAMTools SNP 20000 20000 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42524 SAMTools SNP 20292 20292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C18%2C61%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42524 SAMTools SNP 21680 21680 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42524 SAMTools SNP 21709 21709 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C13%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.00052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42524 SAMTools SNP 42519 42519 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42524 SAMTools SNP 42533 42533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42524 SAMTools SNP 42565 42565 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold42524 SAMTools SNP 43595 43595 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42524 SAMTools SNP 43616 43616 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42524 SAMTools SNP 44174 44174 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 44739 44739 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42524 SAMTools SNP 44749 44749 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold42524 SAMTools SNP 45247 45247 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42524 SAMTools SNP 46043 46043 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold42524 SAMTools SNP 46419 46419 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 46862 46862 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 54595 54595 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42524 SAMTools SNP 54703 54703 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 54715 54715 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42524 SAMTools SNP 55390 55390 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C242:99 scaffold42524 SAMTools SNP 55399 55399 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold42524 SAMTools SNP 56182 56182 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C160:63 scaffold42524 SAMTools SNP 56493 56493 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold42524 SAMTools SNP 56600 56600 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42524 SAMTools SNP 56740 56740 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42524 SAMTools SNP 56873 56873 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42524 SAMTools SNP 56909 56909 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42524 SAMTools SNP 57164 57164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.041%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold42524 SAMTools SNP 57182 57182 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.024%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold42524 SAMTools SNP 57330 57330 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42524 SAMTools SNP 57384 57384 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.49%2C2.4e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C153:39 scaffold42524 SAMTools SNP 57919 57919 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold42524 SAMTools SNP 57937 57937 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C237:87 scaffold42524 SAMTools SNP 58045 58045 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42524 SAMTools SNP 58057 58057 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 58590 58590 75.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold42524 SAMTools SNP 58599 58599 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 59028 59028 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42524 SAMTools SNP 59056 59056 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42524 SAMTools SNP 59087 59087 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 59122 59122 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 59277 59277 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 59652 59652 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42524 SAMTools SNP 59676 59676 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 59778 59778 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 59795 59795 34.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold42524 SAMTools SNP 60117 60117 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C73:75 scaffold42524 SAMTools SNP 60138 60138 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42524 SAMTools SNP 60661 60661 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42524 SAMTools SNP 60673 60673 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D26.8%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C67:57 scaffold42524 SAMTools SNP 60766 60766 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold42524 SAMTools SNP 61140 61140 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42524 SAMTools SNP 61191 61191 56.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold42524 SAMTools SNP 61447 61447 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold42524 SAMTools SNP 61480 61480 91.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold42524 SAMTools SNP 63900 63900 87.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C15%2C0:27 scaffold42524 SAMTools SNP 75039 75039 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 76175 76175 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42524 SAMTools SNP 76865 76865 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42524 SAMTools SNP 76976 76976 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold42524 SAMTools SNP 77538 77538 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.27%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42524 SAMTools SNP 77562 77562 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42524 SAMTools SNP 77577 77577 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42524 SAMTools SNP 78129 78129 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42524 SAMTools SNP 78336 78336 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42524 SAMTools SNP 79495 79495 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 82649 82649 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42524 SAMTools SNP 83844 83844 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 91943 91943 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 96985 96985 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 97096 97096 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42524 SAMTools SNP 100624 100624 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42524 SAMTools SNP 100651 100651 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C236:83 scaffold42524 SAMTools SNP 102370 102370 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42524 SAMTools SNP 103004 103004 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.31%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold42524 SAMTools SNP 145266 145266 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.11%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C36:34 scaffold42528 SAMTools SNP 28542 28542 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42528 SAMTools SNP 28781 28781 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42528 SAMTools SNP 29558 29558 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42528 SAMTools SNP 44775 44775 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C2%2C19%2C1%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D1%2C2.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42528 SAMTools SNP 56691 56691 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42528 SAMTools SNP 56717 56717 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42528 SAMTools SNP 58958 58958 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42528 SAMTools SNP 59294 59294 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold42528 SAMTools SNP 93501 93501 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C12%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.43%2C3.1e-37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42528 SAMTools SNP 93739 93739 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C9%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.018%2C6.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold42528 SAMTools SNP 93762 93762 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42528 SAMTools SNP 94784 94784 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00039%2C0.12%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42528 SAMTools SNP 94814 94814 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.31%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold42528 SAMTools SNP 95585 95585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 96720 96720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 96729 96729 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.36%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42528 SAMTools SNP 96759 96759 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42528 SAMTools SNP 97380 97380 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42528 SAMTools SNP 97401 97401 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42528 SAMTools SNP 97408 97408 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42528 SAMTools SNP 98108 98108 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 98323 98323 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 98326 98326 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 98401 98401 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C251:99 scaffold42528 SAMTools SNP 98600 98600 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 98633 98633 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C28%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.24%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold42528 SAMTools SNP 98678 98678 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C10%2C43%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.038%2C2.8e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42528 SAMTools SNP 98690 98690 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C56%2C10%2C49%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.029%2C1.2e-45%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42528 SAMTools SNP 100022 100022 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.14%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold42528 SAMTools SNP 100026 100026 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42528 SAMTools SNP 100052 100052 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42528 SAMTools SNP 100427 100427 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42528 SAMTools SNP 100493 100493 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42528 SAMTools SNP 102623 102623 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42528 SAMTools SNP 105153 105153 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold42528 SAMTools SNP 106384 106384 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C12%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 106682 106682 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C5%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 106997 106997 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C37%2C15%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.46%2C1%2C1%2C3.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold42528 SAMTools SNP 107018 107018 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 107294 107294 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C45%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D1%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C47%2C0:91 scaffold42528 SAMTools SNP 107333 107333 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C31%2C9%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00016%2C1%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42528 SAMTools SNP 107775 107775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 111180 111180 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C165%2C7%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.4e-06%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 111343 111343 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C53%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42528 SAMTools SNP 111423 111423 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 111436 111436 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 112218 112218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C30%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.46%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 112270 112270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 112441 112441 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C2%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.31%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold42528 SAMTools SNP 112471 112471 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C49%2C2%2C11%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.33%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold42528 SAMTools SNP 113581 113581 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C13%2C29%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.39%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold42528 SAMTools SNP 115020 115020 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C54%2C13%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold42528 SAMTools SNP 115053 115053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 115083 115083 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C53%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1.5e-11%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C216:99 scaffold42528 SAMTools SNP 115544 115544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 115586 115586 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42528 SAMTools SNP 115604 115604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42528 SAMTools SNP 115634 115634 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D194%3BPV4%3D8.7e-07%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold42528 SAMTools SNP 115990 115990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C21%2C10%3BMQ%3D50%3BFQ%3D199%3BPV4%3D7.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold42528 SAMTools SNP 116788 116788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C15%2C22%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold42528 SAMTools SNP 116815 116815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C26%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.00067%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C130:99 scaffold42528 SAMTools SNP 116817 116817 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C63%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D3.1e-10%2C1%2C1%2C6.5e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold42528 SAMTools SNP 117303 117303 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42528 SAMTools SNP 117345 117345 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 118826 118826 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C696%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 119011 119011 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 119027 119027 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 119060 119060 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 121697 121697 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C149%2C0%2C87%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold42528 SAMTools SNP 121707 121707 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C114%2C0%2C48%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42528 SAMTools SNP 121741 121741 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold42528 SAMTools SNP 122265 122265 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold42528 SAMTools SNP 122434 122434 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42528 SAMTools SNP 124187 124187 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0035%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42528 SAMTools SNP 129798 129798 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42528 SAMTools SNP 129850 129850 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C15%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold42528 SAMTools SNP 136233 136233 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42528 SAMTools SNP 136279 136279 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42528 SAMTools SNP 137744 137744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C34%2C37%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C0.0076%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 137861 137861 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold42528 SAMTools SNP 137877 137877 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42528 SAMTools SNP 137932 137932 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C17%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 138432 138432 145 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C7%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.7%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold42528 SAMTools SNP 138570 138570 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C57%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.023%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 139060 139060 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C11%2C27%2C3%3BMQ%3D49%3BFQ%3D189%3BPV4%3D1%2C2e-13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42528 SAMTools SNP 139521 139521 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold42528 SAMTools SNP 141977 141977 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 141989 141989 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 142073 142073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C50%2C223%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 142926 142926 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C77%2C14%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.7e-05%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 143106 143106 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C1%2C14%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.053%2C6.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42528 SAMTools SNP 143133 143133 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C8%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42528 SAMTools SNP 143142 143142 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C17%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold42528 SAMTools SNP 143570 143570 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C15%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D7.4e-06%2C4.6e-15%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42528 SAMTools SNP 143771 143771 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C22%2C33%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D5.5e-06%2C0.051%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42528 SAMTools SNP 144361 144361 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C87%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 144394 144394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.15%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 144491 144491 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D6.4e-05%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42528 SAMTools SNP 145058 145058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C0.29%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 145506 145506 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D257%2C2%2C247%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.0048%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 145515 145515 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C13%2C208%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 146447 146447 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C206:74 scaffold42528 SAMTools SNP 146489 146489 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42528 SAMTools SNP 146885 146885 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C228:36 scaffold42528 SAMTools SNP 146897 146897 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42528 SAMTools SNP 148488 148488 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42528 SAMTools SNP 149975 149975 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C88%2C32%2C64%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.28%2C2e-145%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42528 SAMTools SNP 157808 157808 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C0%2C151%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C0.16%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 157821 157821 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold42528 SAMTools SNP 158386 158386 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C133%2C53%2C140%3BMQ%3D49%3BFQ%3D225%3BPV4%3D7.4e-05%2C1%2C8.3e-05%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 158396 158396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C133%2C55%2C140%3BMQ%3D49%3BFQ%3D225%3BPV4%3D8.3e-05%2C0.034%2C8.2e-05%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 158623 158623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C23%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold42528 SAMTools SNP 158675 158675 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C80%2C2%2C10%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42528 SAMTools SNP 159116 159116 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42528 SAMTools SNP 159437 159437 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C66%2C0:94 scaffold42528 SAMTools SNP 160137 160137 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.012%2C1.1e-08%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C176:28 scaffold42528 SAMTools SNP 161692 161692 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C3%2C100%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 161880 161880 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C63%2C127%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 161996 161996 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C196%2C61%2C162%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 162169 162169 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C304%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42528 SAMTools SNP 162312 162312 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42528 SAMTools SNP 162417 162417 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C76%2C44%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-06%2C0.064%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 162498 162498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42528 SAMTools SNP 165332 165332 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C30%2C0:55 scaffold42528 SAMTools SNP 169356 169356 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42530 SAMTools SNP 3946 3946 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42530 SAMTools SNP 3961 3961 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42530 SAMTools SNP 11384 11384 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C42%2C0:81 scaffold42530 SAMTools SNP 11930 11930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 11994 11994 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42530 SAMTools SNP 14222 14222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C25%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold42530 SAMTools SNP 14634 14634 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C40%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 15186 15186 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C13%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.35%2C1.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42530 SAMTools SNP 15617 15617 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C5%2C25%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.47%2C2.4e-40%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42530 SAMTools SNP 16050 16050 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C54%2C0:99 scaffold42530 SAMTools SNP 16065 16065 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.26%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42530 SAMTools SNP 16152 16152 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold42530 SAMTools SNP 16389 16389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C2.4e-41%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 16590 16590 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.53%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold42530 SAMTools SNP 16640 16640 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold42530 SAMTools SNP 16653 16653 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.23%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C101:51 scaffold42530 SAMTools SNP 16733 16733 13.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold42530 SAMTools SNP 16752 16752 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C5%2C31%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.66%2C8.4e-35%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42530 SAMTools SNP 16983 16983 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C21%2C89%2C16%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.14%2C1.3e-198%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold42530 SAMTools SNP 18640 18640 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.37%2C0.24%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42530 SAMTools SNP 19192 19192 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 20000 20000 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C12%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C226%2C0:99 scaffold42530 SAMTools SNP 20071 20071 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C5e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 20887 20887 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0037%2C6.8e-06%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42530 SAMTools SNP 20994 20994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42530 SAMTools SNP 21203 21203 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C66%2C0:99 scaffold42530 SAMTools SNP 21450 21450 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C51%2C6%2C47%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.098%2C2.1e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42530 SAMTools SNP 21581 21581 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 21991 21991 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.00046%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C125:72 scaffold42530 SAMTools SNP 28859 28859 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C38:41 scaffold42530 SAMTools SNP 43093 43093 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42530 SAMTools SNP 45325 45325 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.58%2C4.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C220:68 scaffold42530 SAMTools SNP 46599 46599 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42530 SAMTools SNP 49939 49939 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42530 SAMTools SNP 53581 53581 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42530 SAMTools SNP 53603 53603 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold42530 SAMTools SNP 53757 53757 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42530 SAMTools SNP 55966 55966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42530 SAMTools SNP 123112 123112 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42530 SAMTools SNP 123149 123149 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42530 SAMTools SNP 127933 127933 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42530 SAMTools SNP 128283 128283 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42530 SAMTools SNP 129881 129881 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C16%2C5%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 130307 130307 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-06%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 133938 133938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42530 SAMTools SNP 134229 134229 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42530 SAMTools SNP 135473 135473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42530 SAMTools SNP 141821 141821 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold42530 SAMTools SNP 143124 143124 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C21%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.041%2C5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42530 SAMTools SNP 143618 143618 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.42%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C188:98 scaffold42530 SAMTools SNP 143660 143660 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42530 SAMTools SNP 143912 143912 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C235:99 scaffold42530 SAMTools SNP 143949 143949 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42530 SAMTools SNP 144033 144033 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C159:99 scaffold42530 SAMTools SNP 144533 144533 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42530 SAMTools SNP 147441 147441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42530 SAMTools SNP 149482 149482 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.51%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C242:99 scaffold42530 SAMTools SNP 150851 150851 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42530 SAMTools SNP 155970 155970 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1.3e-32%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C234:99 scaffold42530 SAMTools SNP 156024 156024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42530 SAMTools SNP 156675 156675 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold42530 SAMTools SNP 157128 157128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42530 SAMTools SNP 157882 157882 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C36%2C0:69 scaffold42530 SAMTools SNP 162455 162455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42530 SAMTools SNP 162465 162465 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42530 SAMTools SNP 164103 164103 17.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C3e-12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C14:17 scaffold42530 SAMTools SNP 164131 164131 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0126%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42530 SAMTools SNP 164830 164830 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42530 SAMTools SNP 164896 164896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C12%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.6%2C0.099%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold42530 SAMTools SNP 165429 165429 36.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold42540 SAMTools SNP 455 455 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D18%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C141%2C0:36 scaffold42540 SAMTools SNP 13261 13261 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42540 SAMTools SNP 13309 13309 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42540 SAMTools SNP 13369 13369 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C73:76 scaffold42540 SAMTools SNP 13876 13876 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold42540 SAMTools SNP 13890 13890 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42540 SAMTools SNP 15941 15941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold42540 SAMTools SNP 16013 16013 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C110:88 scaffold42540 SAMTools SNP 16624 16624 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.31%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold42540 SAMTools SNP 16829 16829 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42540 SAMTools SNP 17911 17911 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42540 SAMTools SNP 21570 21570 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 21616 21616 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.4%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C77:73 scaffold42540 SAMTools SNP 22141 22141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 22180 22180 89.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C15%2C0:27 scaffold42540 SAMTools SNP 23019 23019 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 23881 23881 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C183:99 scaffold42540 SAMTools SNP 26106 26106 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C0%2C31%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.025%2C9.4e-17%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold42540 SAMTools SNP 28036 28036 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42540 SAMTools SNP 28458 28458 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C74:58 scaffold42540 SAMTools SNP 29303 29303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42540 SAMTools SNP 29593 29593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42540 SAMTools SNP 31602 31602 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42540 SAMTools SNP 31861 31861 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42540 SAMTools SNP 37400 37400 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42540 SAMTools SNP 46516 46516 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42540 SAMTools SNP 46755 46755 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.56%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C183:99 scaffold42540 SAMTools SNP 47204 47204 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.24%2C0.29%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C199:99 scaffold42540 SAMTools SNP 47228 47228 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C112:99 scaffold42540 SAMTools SNP 48179 48179 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.015%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C152:99 scaffold42540 SAMTools SNP 48191 48191 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.2%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C107:99 scaffold42540 SAMTools SNP 48260 48260 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42540 SAMTools SNP 48263 48263 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold42540 SAMTools SNP 48276 48276 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C5.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42540 SAMTools SNP 49104 49104 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42540 SAMTools SNP 49196 49196 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.5e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C32:35 scaffold42540 SAMTools SNP 50576 50576 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 51438 51438 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold42540 SAMTools SNP 51709 51709 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 51743 51743 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42540 SAMTools SNP 52655 52655 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.22%2C0.38%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold42540 SAMTools SNP 54336 54336 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42540 SAMTools SNP 54359 54359 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42540 SAMTools SNP 56614 56614 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C54%2C11%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D2e-09%2C4e-39%2C1%2C6.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42540 SAMTools SNP 56635 56635 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.11%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 56998 56998 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 57061 57061 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C6%2C25%2C7%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.013%2C8.9e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42540 SAMTools SNP 57277 57277 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C98%2C0%2C28%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42540 SAMTools SNP 57334 57334 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C64%2C3%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.16%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42540 SAMTools SNP 57338 57338 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.039%2C0.022%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42540 SAMTools SNP 57340 57340 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.16%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42540 SAMTools SNP 58673 58673 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C97%2C30%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 58855 58855 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C70%2C43%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 59313 59313 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C46%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 59334 59334 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C34%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 59724 59724 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C255%2C0:99 scaffold42540 SAMTools SNP 61365 61365 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42540 SAMTools SNP 62362 62362 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold42540 SAMTools SNP 64194 64194 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42540 SAMTools SNP 65065 65065 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42540 SAMTools SNP 65087 65087 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold42540 SAMTools SNP 65540 65540 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42540 SAMTools SNP 65558 65558 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C9%2C0:16 scaffold42540 SAMTools SNP 65582 65582 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold42540 SAMTools SNP 65822 65822 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.6e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold42540 SAMTools SNP 65971 65971 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 69233 69233 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 69662 69662 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42540 SAMTools SNP 69669 69669 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C69:72 scaffold42540 SAMTools SNP 69935 69935 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold42540 SAMTools SNP 72962 72962 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold42540 SAMTools SNP 73204 73204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 73225 73225 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42540 SAMTools SNP 73354 73354 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 73837 73837 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.14%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C136:95 scaffold42540 SAMTools SNP 73861 73861 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 73892 73892 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42540 SAMTools SNP 74226 74226 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.039%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold42540 SAMTools SNP 74232 74232 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.035%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold42540 SAMTools SNP 75011 75011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C28%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42540 SAMTools SNP 78992 78992 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42540 SAMTools SNP 79010 79010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42540 SAMTools SNP 80217 80217 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C0%2C18%3BMQ%3D50%3BFQ%3D172%3BPV4%3D6.6e-05%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42540 SAMTools SNP 80370 80370 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C18%2C17%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.58%2C1.8e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42540 SAMTools SNP 82835 82835 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C29:32 scaffold42540 SAMTools SNP 84990 84990 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42540 SAMTools SNP 87725 87725 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42540 SAMTools SNP 88412 88412 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 88610 88610 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42540 SAMTools SNP 88821 88821 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42540 SAMTools SNP 90406 90406 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold42540 SAMTools SNP 92128 92128 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C148:74 scaffold42540 SAMTools SNP 95327 95327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42540 SAMTools SNP 95403 95403 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C4%2C12%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.14%2C6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C200:99 scaffold42540 SAMTools SNP 95457 95457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 95671 95671 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 97335 97335 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42540 SAMTools SNP 98438 98438 41.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0%2C65%2C3%2C62:39 scaffold42540 SAMTools SNP 100907 100907 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C33%2C0:63 scaffold42540 SAMTools SNP 101397 101397 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1.2e-05%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C104:99 scaffold42540 SAMTools SNP 107894 107894 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 108189 108189 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42540 SAMTools SNP 109035 109035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42540 SAMTools SNP 109119 109119 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C15%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C248:99 scaffold42540 SAMTools SNP 109596 109596 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C231:37 scaffold42540 SAMTools SNP 109597 109597 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0037%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold42540 SAMTools SNP 109600 109600 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold42540 SAMTools SNP 109611 109611 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold42540 SAMTools SNP 112406 112406 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42540 SAMTools SNP 114676 114676 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C153:77 scaffold42540 SAMTools SNP 114736 114736 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C163:99 scaffold42540 SAMTools SNP 115157 115157 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.07%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42540 SAMTools SNP 115744 115744 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold42540 SAMTools SNP 116074 116074 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C115:99 scaffold42540 SAMTools SNP 116119 116119 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold42540 SAMTools SNP 116122 116122 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold42540 SAMTools SNP 118117 118117 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42540 SAMTools SNP 120112 120112 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42540 SAMTools SNP 122662 122662 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42540 SAMTools SNP 123946 123946 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42540 SAMTools SNP 124028 124028 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42540 SAMTools SNP 128239 128239 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42540 SAMTools SNP 128254 128254 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42540 SAMTools SNP 128278 128278 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42540 SAMTools SNP 128403 128403 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold42540 SAMTools SNP 128435 128435 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.22%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold42540 SAMTools SNP 128595 128595 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold42540 SAMTools SNP 128655 128655 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42540 SAMTools SNP 128788 128788 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42540 SAMTools SNP 129192 129192 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42540 SAMTools SNP 129324 129324 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.058%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42540 SAMTools SNP 129364 129364 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42540 SAMTools SNP 130041 130041 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42540 SAMTools SNP 132515 132515 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold42540 SAMTools SNP 132882 132882 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold42540 SAMTools SNP 134441 134441 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C244:99 scaffold42540 SAMTools SNP 136532 136532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C76%2C9%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 136574 136574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42540 SAMTools SNP 137663 137663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42540 SAMTools SNP 138191 138191 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C18%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold42540 SAMTools SNP 139054 139054 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42540 SAMTools SNP 170939 170939 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D396%2C173%2C0%2C7%3BMQ%3D6%3BFQ%3D-282%3BPV4%3D0.00027%2C1%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C255%2C0:63 scaffold42540 SAMTools SNP 171378 171378 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C31%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C255%2C0:99 scaffold42540 SAMTools SNP 171698 171698 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1082%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1008%2C46%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42540 SAMTools SNP 171719 171719 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1107%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D466%2C55%2C546%2C29%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42540 SAMTools SNP 171973 171973 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C301%2C4%2C260%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.56%2C2.8e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 13072 13072 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42556 SAMTools SNP 13105 13105 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42556 SAMTools SNP 24069 24069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 24177 24177 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 25283 25283 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.56%2C3.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C245:84 scaffold42556 SAMTools SNP 50381 50381 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 50969 50969 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42556 SAMTools SNP 51005 51005 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42556 SAMTools SNP 51368 51368 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42556 SAMTools SNP 51812 51812 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42556 SAMTools SNP 73377 73377 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 76728 76728 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42556 SAMTools SNP 76781 76781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 77920 77920 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 78880 78880 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42556 SAMTools SNP 78922 78922 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42556 SAMTools SNP 79951 79951 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42556 SAMTools SNP 80077 80077 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.042%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42556 SAMTools SNP 80408 80408 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold42556 SAMTools SNP 81219 81219 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42556 SAMTools SNP 87159 87159 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42556 SAMTools SNP 87163 87163 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42556 SAMTools SNP 87277 87277 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C38:41 scaffold42556 SAMTools SNP 87286 87286 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold42556 SAMTools SNP 88435 88435 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42556 SAMTools SNP 91104 91104 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42556 SAMTools SNP 91472 91472 3.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42556 SAMTools SNP 92412 92412 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42556 SAMTools SNP 93460 93460 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C99%2C0:99 scaffold42556 SAMTools SNP 94215 94215 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C52%2C12%2C10%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42556 SAMTools SNP 94230 94230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42556 SAMTools SNP 96349 96349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42556 SAMTools SNP 97297 97297 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C17%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C246:99 scaffold42556 SAMTools SNP 97942 97942 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold42556 SAMTools SNP 98862 98862 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C63%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C241%2C0:99 scaffold42556 SAMTools SNP 99199 99199 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.55%2C5.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold42556 SAMTools SNP 99217 99217 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold42556 SAMTools SNP 99405 99405 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold42556 SAMTools SNP 120733 120733 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold42556 SAMTools SNP 125064 125064 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42556 SAMTools SNP 125175 125175 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold42556 SAMTools SNP 126287 126287 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D3%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C96%2C0:75 scaffold42556 SAMTools SNP 128866 128866 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42556 SAMTools SNP 128918 128918 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C25%2C52%2C32%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 130881 130881 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C95%2C24%2C64%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 131965 131965 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 131968 131968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 139163 139163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C15%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 140520 140520 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C280%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42556 SAMTools SNP 141544 141544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C11%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 141802 141802 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42556 SAMTools SNP 141853 141853 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C38%2C35%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 142153 142153 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C39%2C43%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42556 SAMTools SNP 142309 142309 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C12%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42556 SAMTools SNP 142655 142655 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C39%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42556 SAMTools SNP 143645 143645 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.21%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42556 SAMTools SNP 145593 145593 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C11%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.72%2C4e-32%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42556 SAMTools SNP 152716 152716 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42556 SAMTools SNP 153187 153187 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42556 SAMTools SNP 153313 153313 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42556 SAMTools SNP 153474 153474 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42556 SAMTools SNP 153967 153967 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42556 SAMTools SNP 153988 153988 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42556 SAMTools SNP 154015 154015 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.62%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold42556 SAMTools SNP 154511 154511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42556 SAMTools SNP 154531 154531 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold42556 SAMTools SNP 154679 154679 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold42556 SAMTools SNP 154849 154849 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42556 SAMTools SNP 155037 155037 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42556 SAMTools SNP 157532 157532 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42556 SAMTools SNP 158602 158602 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42556 SAMTools SNP 159981 159981 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42556 SAMTools SNP 160012 160012 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold42556 SAMTools SNP 160024 160024 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42556 SAMTools SNP 160254 160254 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C1%2C17%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.21%2C0.31%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold42556 SAMTools SNP 160275 160275 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C5%2C19%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42556 SAMTools SNP 160704 160704 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C45%2C0:87 scaffold42556 SAMTools SNP 161150 161150 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0002%2C0.28%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold42556 SAMTools SNP 161261 161261 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42556 SAMTools SNP 161272 161272 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42556 SAMTools SNP 161589 161589 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42556 SAMTools SNP 161909 161909 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold42556 SAMTools SNP 162239 162239 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold42556 SAMTools SNP 163136 163136 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C63%2C0:99 scaffold42556 SAMTools SNP 164095 164095 40.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold42556 SAMTools SNP 166370 166370 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C99:99 scaffold42556 SAMTools SNP 166408 166408 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold42556 SAMTools SNP 166770 166770 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C198:99 scaffold42556 SAMTools SNP 167043 167043 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold42556 SAMTools SNP 167212 167212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42556 SAMTools SNP 167296 167296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42556 SAMTools SNP 168016 168016 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold42556 SAMTools SNP 168043 168043 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C197:99 scaffold42556 SAMTools SNP 168059 168059 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold42556 SAMTools SNP 168139 168139 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C245:96 scaffold42556 SAMTools SNP 168303 168303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42556 SAMTools SNP 168965 168965 194 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0088%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C134:99 scaffold42556 SAMTools SNP 169183 169183 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42556 SAMTools SNP 169186 169186 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold42556 SAMTools SNP 169219 169219 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42556 SAMTools SNP 169636 169636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42556 SAMTools SNP 169684 169684 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42556 SAMTools SNP 169958 169958 45.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C195%2C177%2C233%2C0%2C218:33 scaffold42556 SAMTools SNP 170244 170244 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42556 SAMTools SNP 170777 170777 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42558 SAMTools SNP 487 487 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 562 562 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold42558 SAMTools SNP 18200 18200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42558 SAMTools SNP 19932 19932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42558 SAMTools SNP 20776 20776 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42558 SAMTools SNP 21023 21023 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42558 SAMTools SNP 22398 22398 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold42558 SAMTools SNP 22867 22867 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C16%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 23395 23395 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 23419 23419 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.025%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42558 SAMTools SNP 23428 23428 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C3%2C15%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0014%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42558 SAMTools SNP 23503 23503 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42558 SAMTools SNP 23691 23691 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0037%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42558 SAMTools SNP 23710 23710 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 23892 23892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 24385 24385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C5%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 24887 24887 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C66%2C0:99 scaffold42558 SAMTools SNP 24929 24929 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold42558 SAMTools SNP 25196 25196 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42558 SAMTools SNP 25235 25235 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 25635 25635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.48%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 25901 25901 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0017%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42558 SAMTools SNP 26501 26501 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.48%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42558 SAMTools SNP 26567 26567 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold42558 SAMTools SNP 26600 26600 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42558 SAMTools SNP 27346 27346 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42558 SAMTools SNP 27375 27375 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42558 SAMTools SNP 27822 27822 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C34%2C12%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0013%2C0.2%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold42558 SAMTools SNP 27825 27825 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C40%2C9%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.062%2C0.0031%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold42558 SAMTools SNP 27864 27864 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C28%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42558 SAMTools SNP 27891 27891 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C61%2C16%2C21%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.03%2C4.7e-31%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold42558 SAMTools SNP 28683 28683 113 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C5%2C13%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.49%2C7.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42558 SAMTools SNP 31247 31247 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold42558 SAMTools SNP 31268 31268 49.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold42558 SAMTools SNP 31687 31687 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C18:21 scaffold42558 SAMTools SNP 31713 31713 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42558 SAMTools SNP 37863 37863 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42558 SAMTools SNP 37884 37884 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 39709 39709 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 39712 39712 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 47441 47441 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C58%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42558 SAMTools SNP 48352 48352 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 48690 48690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 48777 48777 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C9%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 48801 48801 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C10%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 51245 51245 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42558 SAMTools SNP 51290 51290 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C6%3BMQ%3D49%3BFQ%3D76%3BPV4%3D0.071%2C1%2C0.018%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42558 SAMTools SNP 51566 51566 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C2.1e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C102:99 scaffold42558 SAMTools SNP 51596 51596 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42558 SAMTools SNP 51614 51614 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42558 SAMTools SNP 53838 53838 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42558 SAMTools SNP 53842 53842 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42558 SAMTools SNP 53891 53891 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42558 SAMTools SNP 60046 60046 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold42558 SAMTools SNP 66224 66224 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42558 SAMTools SNP 66232 66232 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42558 SAMTools SNP 66562 66562 157 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C47%2C29%2C180%2C0%2C177:33 scaffold42558 SAMTools SNP 66574 66574 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42558 SAMTools SNP 66580 66580 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.017%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold42558 SAMTools SNP 67307 67307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42558 SAMTools SNP 67755 67755 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C60%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold42558 SAMTools SNP 67896 67896 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold42558 SAMTools SNP 74688 74688 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold42558 SAMTools SNP 100750 100750 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 100857 100857 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42558 SAMTools SNP 100880 100880 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C21:24 scaffold42558 SAMTools SNP 108376 108376 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 108686 108686 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold42558 SAMTools SNP 108741 108741 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.32%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42558 SAMTools SNP 108771 108771 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42558 SAMTools SNP 110778 110778 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.039%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold42558 SAMTools SNP 110784 110784 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42558 SAMTools SNP 112222 112222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold42558 SAMTools SNP 112740 112740 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold42558 SAMTools SNP 112780 112780 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.47%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42558 SAMTools SNP 112798 112798 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.0048%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C106:99 scaffold42558 SAMTools SNP 112804 112804 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42558 SAMTools SNP 114359 114359 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42558 SAMTools SNP 114362 114362 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold42558 SAMTools SNP 114404 114404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold42558 SAMTools SNP 114422 114422 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.43%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42558 SAMTools SNP 114804 114804 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.13%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42558 SAMTools SNP 114812 114812 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold42558 SAMTools SNP 116004 116004 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42558 SAMTools SNP 118306 118306 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.33%2C0.0011%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C138:63 scaffold42558 SAMTools SNP 118466 118466 5.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold42558 SAMTools SNP 131051 131051 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 145014 145014 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 146473 146473 59.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42558 SAMTools SNP 148469 148469 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C144%2C0:99 scaffold42558 SAMTools SNP 156576 156576 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold42558 SAMTools SNP 156594 156594 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold42558 SAMTools SNP 164403 164403 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C215:99 scaffold42558 SAMTools SNP 164543 164543 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold42558 SAMTools SNP 164771 164771 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold42558 SAMTools SNP 164841 164841 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.068%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold42558 SAMTools SNP 165329 165329 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42558 SAMTools SNP 165813 165813 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.031%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold42558 SAMTools SNP 165900 165900 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42558 SAMTools SNP 171229 171229 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C24%2C0:45 scaffold42558 SAMTools SNP 171312 171312 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.36%2C1.2e-14%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C210:28 scaffold42558 SAMTools SNP 173052 173052 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42566 SAMTools SNP 7381 7381 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42566 SAMTools SNP 54643 54643 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42566 SAMTools SNP 54658 54658 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42566 SAMTools SNP 54684 54684 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold42566 SAMTools SNP 54736 54736 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold42566 SAMTools SNP 79331 79331 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42566 SAMTools SNP 86601 86601 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42568 SAMTools SNP 22 22 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42568 SAMTools SNP 43 43 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 130 130 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 5711 5711 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0058%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42568 SAMTools SNP 18038 18038 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C27%2C0:51 scaffold42568 SAMTools SNP 18190 18190 13.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold42568 SAMTools SNP 21704 21704 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C36%2C0:69 scaffold42568 SAMTools SNP 21716 21716 55.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold42568 SAMTools SNP 21819 21819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.16%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 22939 22939 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 22956 22956 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 22985 22985 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C27%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 23206 23206 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.16%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 23624 23624 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42568 SAMTools SNP 25528 25528 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42568 SAMTools SNP 25668 25668 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.021%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold42568 SAMTools SNP 25702 25702 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42568 SAMTools SNP 25741 25741 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold42568 SAMTools SNP 26361 26361 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold42568 SAMTools SNP 27666 27666 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42568 SAMTools SNP 27690 27690 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42568 SAMTools SNP 27788 27788 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42568 SAMTools SNP 29064 29064 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C190:99 scaffold42568 SAMTools SNP 29557 29557 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold42568 SAMTools SNP 31034 31034 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42568 SAMTools SNP 31486 31486 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.055%2C0.025%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42568 SAMTools SNP 32378 32378 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42568 SAMTools SNP 32423 32423 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.018%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold42568 SAMTools SNP 32956 32956 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42568 SAMTools SNP 33362 33362 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.077%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold42568 SAMTools SNP 33482 33482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C47%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold42568 SAMTools SNP 34716 34716 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42568 SAMTools SNP 37595 37595 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C8%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0034%2C2e-05%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold42568 SAMTools SNP 37598 37598 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0019%2C5.6e-12%2C1%2C9.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42568 SAMTools SNP 37616 37616 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C6%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.7%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold42568 SAMTools SNP 38064 38064 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C8%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0031%2C0.083%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold42568 SAMTools SNP 38582 38582 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.009%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C137:99 scaffold42568 SAMTools SNP 38657 38657 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.01%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C68:71 scaffold42568 SAMTools SNP 38678 38678 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C21%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold42568 SAMTools SNP 44174 44174 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold42568 SAMTools SNP 44445 44445 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C33%2C0:63 scaffold42568 SAMTools SNP 52460 52460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42568 SAMTools SNP 59111 59111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42568 SAMTools SNP 59195 59195 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42568 SAMTools SNP 59471 59471 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42568 SAMTools SNP 59528 59528 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42568 SAMTools SNP 59561 59561 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42568 SAMTools SNP 61268 61268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42568 SAMTools SNP 61741 61741 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 62235 62235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42568 SAMTools SNP 62785 62785 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42568 SAMTools SNP 63421 63421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C64%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold42568 SAMTools SNP 64083 64083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold42568 SAMTools SNP 68785 68785 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C4.2e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold42568 SAMTools SNP 68797 68797 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C27%2C0:50 scaffold42568 SAMTools SNP 68884 68884 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold42568 SAMTools SNP 68887 68887 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold42568 SAMTools SNP 70522 70522 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42568 SAMTools SNP 70528 70528 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42568 SAMTools SNP 70645 70645 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.036%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C170:46 scaffold42568 SAMTools SNP 71129 71129 186 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42568 SAMTools SNP 71266 71266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42568 SAMTools SNP 71276 71276 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42568 SAMTools SNP 71741 71741 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.42%2C1%2C2.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C239:99 scaffold42568 SAMTools SNP 71770 71770 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C6.3e-05%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C211:68 scaffold42568 SAMTools SNP 72476 72476 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42568 SAMTools SNP 76685 76685 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 76720 76720 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.35%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C242:99 scaffold42568 SAMTools SNP 76779 76779 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold42568 SAMTools SNP 77153 77153 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C17%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.00015%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42568 SAMTools SNP 77313 77313 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold42568 SAMTools SNP 77462 77462 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42568 SAMTools SNP 77613 77613 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42568 SAMTools SNP 77657 77657 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 77670 77670 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.024%2C0.079%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42568 SAMTools SNP 78244 78244 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C216:36 scaffold42568 SAMTools SNP 79373 79373 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold42568 SAMTools SNP 79447 79447 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.2%2C0.071%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold42568 SAMTools SNP 79951 79951 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold42568 SAMTools SNP 82498 82498 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold42568 SAMTools SNP 84476 84476 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 84782 84782 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42568 SAMTools SNP 84812 84812 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 84830 84830 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 84836 84836 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 84992 84992 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 86313 86313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C55%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold42568 SAMTools SNP 96129 96129 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C33%2C0:63 scaffold42568 SAMTools SNP 96212 96212 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42568 SAMTools SNP 100328 100328 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42568 SAMTools SNP 100719 100719 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C27%2C0:51 scaffold42568 SAMTools SNP 100991 100991 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold42568 SAMTools SNP 101306 101306 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42568 SAMTools SNP 103447 103447 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C0%3BMQ%3D47%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold42568 SAMTools SNP 103624 103624 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42568 SAMTools SNP 108058 108058 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold42568 SAMTools SNP 109419 109419 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42568 SAMTools SNP 110009 110009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C24%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42568 SAMTools SNP 110151 110151 72.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold42568 SAMTools SNP 110813 110813 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42568 SAMTools SNP 110950 110950 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42568 SAMTools SNP 110986 110986 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.087%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold42568 SAMTools SNP 112017 112017 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42568 SAMTools SNP 112122 112122 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42568 SAMTools SNP 112143 112143 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.077%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42568 SAMTools SNP 112749 112749 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold42568 SAMTools SNP 114639 114639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42568 SAMTools SNP 114890 114890 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.00061%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C173:53 scaffold42568 SAMTools SNP 114966 114966 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42568 SAMTools SNP 115850 115850 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42568 SAMTools SNP 138503 138503 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C0%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D0.042%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42568 SAMTools SNP 138873 138873 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C195:84 scaffold42568 SAMTools SNP 138958 138958 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C26%2C10%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.79%2C2e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42568 SAMTools SNP 139098 139098 38.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold42568 SAMTools SNP 171188 171188 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold42568 SAMTools SNP 171348 171348 48.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold42568 SAMTools SNP 172173 172173 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C9%2C16%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.6%2C1.2e-34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42568 SAMTools SNP 173359 173359 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D154%3BPV4%3D2.4e-05%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold42568 SAMTools SNP 173487 173487 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00063%2C0.068%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42570 SAMTools SNP 2749 2749 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42570 SAMTools SNP 2756 2756 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42570 SAMTools SNP 8549 8549 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42570 SAMTools SNP 14071 14071 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42570 SAMTools SNP 14353 14353 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 43238 43238 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 43276 43276 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 49195 49195 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold42570 SAMTools SNP 49526 49526 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-84%3BPV4%3D0.47%2C0.0031%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C57%2C0:99 scaffold42570 SAMTools SNP 50116 50116 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold42570 SAMTools SNP 51309 51309 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C36%2C0:69 scaffold42570 SAMTools SNP 52374 52374 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42570 SAMTools SNP 52710 52710 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C7%3BMQ%3D49%3BFQ%3D180%3BPV4%3D0.66%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold42570 SAMTools SNP 54205 54205 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.025%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C38:41 scaffold42570 SAMTools SNP 55916 55916 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C5%2C20%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.37%2C8.4e-30%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42570 SAMTools SNP 56171 56171 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C8%2C10%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C9.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold42570 SAMTools SNP 56735 56735 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C8.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C193:43 scaffold42570 SAMTools SNP 56909 56909 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.45%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold42570 SAMTools SNP 57514 57514 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C104:99 scaffold42570 SAMTools SNP 57939 57939 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 57982 57982 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 58026 58026 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42570 SAMTools SNP 105881 105881 63.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold42570 SAMTools SNP 114009 114009 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 114281 114281 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42570 SAMTools SNP 114318 114318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42570 SAMTools SNP 114573 114573 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C57%2C0:99 scaffold42570 SAMTools SNP 115199 115199 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42570 SAMTools SNP 115338 115338 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42570 SAMTools SNP 115398 115398 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold42570 SAMTools SNP 116225 116225 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 116232 116232 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42570 SAMTools SNP 120925 120925 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42570 SAMTools SNP 125377 125377 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 125540 125540 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42570 SAMTools SNP 130623 130623 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42570 SAMTools SNP 130881 130881 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42570 SAMTools SNP 132290 132290 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.053%2C3.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42570 SAMTools SNP 133149 133149 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42570 SAMTools SNP 133221 133221 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42570 SAMTools SNP 133233 133233 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold42570 SAMTools SNP 133777 133777 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42570 SAMTools SNP 133862 133862 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42570 SAMTools SNP 133941 133941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42570 SAMTools SNP 134234 134234 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42570 SAMTools SNP 134254 134254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42570 SAMTools SNP 136363 136363 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.067%2C7.5e-10%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C190:84 scaffold42570 SAMTools SNP 136372 136372 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold42570 SAMTools SNP 136375 136375 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.37%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold42570 SAMTools SNP 136588 136588 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42570 SAMTools SNP 136592 136592 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0015%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold42570 SAMTools SNP 136615 136615 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42570 SAMTools SNP 136631 136631 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42570 SAMTools SNP 136789 136789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42570 SAMTools SNP 136838 136838 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold42570 SAMTools SNP 136878 136878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42570 SAMTools SNP 137232 137232 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.13%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42570 SAMTools SNP 138150 138150 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.64%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold42570 SAMTools SNP 138616 138616 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C0.16%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold42570 SAMTools SNP 139127 139127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42570 SAMTools SNP 139169 139169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42570 SAMTools SNP 139179 139179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42570 SAMTools SNP 139210 139210 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42570 SAMTools SNP 139581 139581 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42570 SAMTools SNP 139625 139625 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 144295 144295 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42570 SAMTools SNP 145160 145160 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold42570 SAMTools SNP 145166 145166 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold42570 SAMTools SNP 145295 145295 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42570 SAMTools SNP 147035 147035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42570 SAMTools SNP 147060 147060 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42570 SAMTools SNP 147671 147671 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42570 SAMTools SNP 147686 147686 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.24%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C200:99 scaffold42570 SAMTools SNP 148350 148350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C21%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42570 SAMTools SNP 148378 148378 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.083%2C0.00078%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold42570 SAMTools SNP 148387 148387 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42570 SAMTools SNP 148643 148643 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42570 SAMTools SNP 149203 149203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42570 SAMTools SNP 149698 149698 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42570 SAMTools SNP 150671 150671 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42570 SAMTools SNP 150742 150742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42570 SAMTools SNP 150749 150749 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42570 SAMTools SNP 151102 151102 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 151135 151135 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C24%2C0:45 scaffold42570 SAMTools SNP 167167 167167 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42570 SAMTools SNP 167186 167186 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42570 SAMTools SNP 169835 169835 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42570 SAMTools SNP 171966 171966 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42584 SAMTools SNP 2889 2889 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 2929 2929 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 3054 3054 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 3079 3079 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 14803 14803 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold42584 SAMTools SNP 14833 14833 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C41:44 scaffold42584 SAMTools SNP 15643 15643 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42584 SAMTools SNP 17196 17196 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C71:56 scaffold42584 SAMTools SNP 21073 21073 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42584 SAMTools SNP 27009 27009 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C29%2C21%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.45%2C7.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C116:99 scaffold42584 SAMTools SNP 27076 27076 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.66%2C9.9e-12%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42584 SAMTools SNP 32422 32422 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 33467 33467 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold42584 SAMTools SNP 38429 38429 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.062%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42584 SAMTools SNP 39875 39875 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C51%2C0:99 scaffold42584 SAMTools SNP 39949 39949 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C22%2C16%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.49%2C2.6e-35%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C241:99 scaffold42584 SAMTools SNP 40376 40376 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C9.3e-12%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C180:99 scaffold42584 SAMTools SNP 40478 40478 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold42584 SAMTools SNP 45283 45283 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C66:36 scaffold42584 SAMTools SNP 45785 45785 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42584 SAMTools SNP 46436 46436 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42584 SAMTools SNP 46576 46576 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42584 SAMTools SNP 49426 49426 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42584 SAMTools SNP 49816 49816 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C20:23 scaffold42584 SAMTools SNP 51661 51661 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42584 SAMTools SNP 51686 51686 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42584 SAMTools SNP 51901 51901 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C212:99 scaffold42584 SAMTools SNP 52762 52762 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42584 SAMTools SNP 56482 56482 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold42584 SAMTools SNP 56527 56527 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42584 SAMTools SNP 57122 57122 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42584 SAMTools SNP 57156 57156 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42584 SAMTools SNP 57858 57858 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42584 SAMTools SNP 57864 57864 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42584 SAMTools SNP 57939 57939 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 58253 58253 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 58789 58789 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 59265 59265 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42584 SAMTools SNP 59488 59488 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 59602 59602 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 59632 59632 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42584 SAMTools SNP 62532 62532 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold42584 SAMTools SNP 62557 62557 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold42584 SAMTools SNP 62575 62575 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42584 SAMTools SNP 62869 62869 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42584 SAMTools SNP 62915 62915 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C28%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.66%2C0.0067%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold42584 SAMTools SNP 63624 63624 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42584 SAMTools SNP 64154 64154 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.029%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42584 SAMTools SNP 64711 64711 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C244:99 scaffold42584 SAMTools SNP 64734 64734 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C205:99 scaffold42584 SAMTools SNP 64744 64744 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C240:99 scaffold42584 SAMTools SNP 64756 64756 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold42584 SAMTools SNP 65201 65201 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42584 SAMTools SNP 65212 65212 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42584 SAMTools SNP 65839 65839 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42584 SAMTools SNP 65864 65864 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold42584 SAMTools SNP 65967 65967 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42584 SAMTools SNP 66399 66399 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42584 SAMTools SNP 66412 66412 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42584 SAMTools SNP 67444 67444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42584 SAMTools SNP 67480 67480 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold42584 SAMTools SNP 67564 67564 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.015%2C0.29%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42584 SAMTools SNP 67609 67609 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold42584 SAMTools SNP 68046 68046 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42584 SAMTools SNP 68189 68189 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold42584 SAMTools SNP 68243 68243 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42584 SAMTools SNP 68252 68252 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42584 SAMTools SNP 68256 68256 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42584 SAMTools SNP 68297 68297 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold42584 SAMTools SNP 68626 68626 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42584 SAMTools SNP 68656 68656 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42584 SAMTools SNP 68674 68674 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold42584 SAMTools SNP 69089 69089 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42584 SAMTools SNP 77459 77459 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C34%2C0:65 scaffold42584 SAMTools SNP 78701 78701 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C18%2C0:33 scaffold42592 SAMTools SNP 4826 4826 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42592 SAMTools SNP 4957 4957 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42592 SAMTools SNP 12125 12125 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold42592 SAMTools SNP 13089 13089 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.0003%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C230:89 scaffold42592 SAMTools SNP 13877 13877 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42592 SAMTools SNP 17102 17102 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42592 SAMTools SNP 17153 17153 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D35.6%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C73:66 scaffold42592 SAMTools SNP 17729 17729 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.76%3BPV4%3D1%2C0.27%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C30:33 scaffold42592 SAMTools SNP 17769 17769 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42592 SAMTools SNP 21016 21016 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C217:56 scaffold42592 SAMTools SNP 24528 24528 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C0%2C8%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.32%2C2.8e-11%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42592 SAMTools SNP 35050 35050 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42592 SAMTools SNP 35490 35490 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold42592 SAMTools SNP 35491 35491 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.44%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42592 SAMTools SNP 36937 36937 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42592 SAMTools SNP 38080 38080 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold42592 SAMTools SNP 38095 38095 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42592 SAMTools SNP 38104 38104 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold42592 SAMTools SNP 38785 38785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42592 SAMTools SNP 43216 43216 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold42592 SAMTools SNP 44749 44749 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold42592 SAMTools SNP 51703 51703 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42592 SAMTools SNP 52129 52129 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42592 SAMTools SNP 52132 52132 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42592 SAMTools SNP 64706 64706 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42592 SAMTools SNP 65528 65528 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D383%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D176%2C37%2C73%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C0.068%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42592 SAMTools SNP 66766 66766 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C57%2C27%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42592 SAMTools SNP 69824 69824 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C233:99 scaffold42592 SAMTools SNP 94946 94946 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42592 SAMTools SNP 94966 94966 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42592 SAMTools SNP 95738 95738 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42592 SAMTools SNP 95825 95825 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42592 SAMTools SNP 96076 96076 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42592 SAMTools SNP 136899 136899 14.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold42592 SAMTools SNP 143674 143674 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42592 SAMTools SNP 143688 143688 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42592 SAMTools SNP 162251 162251 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold42592 SAMTools SNP 162300 162300 32.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold42592 SAMTools SNP 162465 162465 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C69:31 scaffold42592 SAMTools SNP 163174 163174 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42592 SAMTools SNP 163326 163326 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42592 SAMTools SNP 172478 172478 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42592 SAMTools SNP 172503 172503 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42596 SAMTools SNP 896 896 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold42596 SAMTools SNP 1507 1507 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42596 SAMTools SNP 2525 2525 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42596 SAMTools SNP 3573 3573 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42596 SAMTools SNP 4286 4286 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42596 SAMTools SNP 7740 7740 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42596 SAMTools SNP 24743 24743 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D48%3BFQ%3D-10.4%3BPV4%3D1%2C2.3e-07%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C17:20 scaffold42596 SAMTools SNP 26325 26325 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42596 SAMTools SNP 28067 28067 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold42596 SAMTools SNP 28072 28072 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.47%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold42596 SAMTools SNP 31478 31478 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold42596 SAMTools SNP 34220 34220 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42596 SAMTools SNP 58968 58968 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold42596 SAMTools SNP 124102 124102 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C42%2C32%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42596 SAMTools SNP 125359 125359 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C35%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.0034%2C8.9e-44%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42596 SAMTools SNP 127781 127781 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold42596 SAMTools SNP 130667 130667 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C22%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C184%2C0:99 scaffold42596 SAMTools SNP 130712 130712 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C13%2C9%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.23%2C8.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold42596 SAMTools SNP 131556 131556 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42596 SAMTools SNP 132575 132575 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C4%2C16%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.49%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42596 SAMTools SNP 133303 133303 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.58%2C0.036%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42596 SAMTools SNP 133342 133342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42596 SAMTools SNP 133779 133779 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42596 SAMTools SNP 134454 134454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C4%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold42596 SAMTools SNP 134486 134486 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42596 SAMTools SNP 134505 134505 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C63%2C0:99 scaffold42596 SAMTools SNP 134562 134562 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42596 SAMTools SNP 136977 136977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42596 SAMTools SNP 137016 137016 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42596 SAMTools SNP 149956 149956 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42596 SAMTools SNP 149963 149963 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C15%2C0:27 scaffold42596 SAMTools SNP 150058 150058 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.49%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold42596 SAMTools SNP 150070 150070 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42596 SAMTools SNP 154892 154892 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C225:28 scaffold42598 SAMTools SNP 482 482 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42598 SAMTools SNP 18867 18867 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C37:30 scaffold42598 SAMTools SNP 28050 28050 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42598 SAMTools SNP 28144 28144 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42598 SAMTools SNP 28717 28717 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold42598 SAMTools SNP 28718 28718 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold42598 SAMTools SNP 28754 28754 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42598 SAMTools SNP 30031 30031 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42598 SAMTools SNP 30058 30058 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42598 SAMTools SNP 30094 30094 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42598 SAMTools SNP 30440 30440 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42598 SAMTools SNP 30537 30537 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42598 SAMTools SNP 30788 30788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 31842 31842 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 31854 31854 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 96225 96225 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42598 SAMTools SNP 97142 97142 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.9e-06%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42598 SAMTools SNP 97238 97238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42598 SAMTools SNP 98085 98085 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42598 SAMTools SNP 98671 98671 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C55%2C39%3BMQ%3D50%3BFQ%3D-280%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold42598 SAMTools SNP 126748 126748 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42598 SAMTools SNP 127145 127145 113 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C72%2C57%2C144%2C0%2C138:27 scaffold42598 SAMTools SNP 131244 131244 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 131972 131972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42598 SAMTools SNP 141371 141371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C37%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42598 SAMTools SNP 141392 141392 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C36%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42598 SAMTools SNP 142490 142490 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42598 SAMTools SNP 142738 142738 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C201:48 scaffold42598 SAMTools SNP 143504 143504 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42598 SAMTools SNP 143509 143509 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42598 SAMTools SNP 144018 144018 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42598 SAMTools SNP 144332 144332 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold42598 SAMTools SNP 144357 144357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42598 SAMTools SNP 144429 144429 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42598 SAMTools SNP 144786 144786 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42598 SAMTools SNP 145772 145772 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42598 SAMTools SNP 145817 145817 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.071%2C0.33%2C1%2C7.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold42598 SAMTools SNP 145827 145827 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 146057 146057 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42598 SAMTools SNP 146090 146090 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42598 SAMTools SNP 146309 146309 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 146322 146322 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 146373 146373 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold42598 SAMTools SNP 146379 146379 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C209:99 scaffold42598 SAMTools SNP 146393 146393 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C210:99 scaffold42598 SAMTools SNP 146760 146760 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 146763 146763 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 149614 149614 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42598 SAMTools SNP 149689 149689 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42598 SAMTools SNP 149710 149710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42598 SAMTools SNP 151320 151320 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42598 SAMTools SNP 151414 151414 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42598 SAMTools SNP 152837 152837 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42598 SAMTools SNP 153030 153030 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold42598 SAMTools SNP 153632 153632 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42598 SAMTools SNP 153637 153637 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 153772 153772 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42598 SAMTools SNP 155199 155199 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold42598 SAMTools SNP 155214 155214 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold42598 SAMTools SNP 155708 155708 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42598 SAMTools SNP 155716 155716 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold42598 SAMTools SNP 155765 155765 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.26%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42598 SAMTools SNP 155992 155992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C8%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold42598 SAMTools SNP 156028 156028 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.21%2C0.022%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C252:83 scaffold42598 SAMTools SNP 156052 156052 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42598 SAMTools SNP 156067 156067 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold42598 SAMTools SNP 156287 156287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42598 SAMTools SNP 156304 156304 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42598 SAMTools SNP 156313 156313 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.24%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42598 SAMTools SNP 156370 156370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42598 SAMTools SNP 156379 156379 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold42598 SAMTools SNP 156398 156398 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42598 SAMTools SNP 156905 156905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42598 SAMTools SNP 156955 156955 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42598 SAMTools SNP 156991 156991 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42598 SAMTools SNP 157251 157251 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42598 SAMTools SNP 157285 157285 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42598 SAMTools SNP 157338 157338 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42598 SAMTools SNP 157683 157683 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42598 SAMTools SNP 157728 157728 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42598 SAMTools SNP 157782 157782 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C0.27%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C32:35 scaffold42598 SAMTools SNP 158204 158204 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C39:42 scaffold42598 SAMTools SNP 158213 158213 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C117:31 scaffold42598 SAMTools SNP 158375 158375 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold42598 SAMTools SNP 158381 158381 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold42598 SAMTools SNP 158393 158393 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.032%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold42598 SAMTools SNP 158409 158409 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42598 SAMTools SNP 158414 158414 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42598 SAMTools SNP 159618 159618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42598 SAMTools SNP 159696 159696 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C1%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold42598 SAMTools SNP 160334 160334 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C221:86 scaffold42598 SAMTools SNP 169674 169674 18 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42598 SAMTools SNP 171696 171696 68.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C11%2C4%3BMQ%3D43%3BFQ%3D-48%3BPV4%3D0.12%2C8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold42598 SAMTools SNP 172348 172348 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold42598 SAMTools SNP 173274 173274 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold426 SAMTools SNP 16841 16841 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold426 SAMTools SNP 16848 16848 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold426 SAMTools SNP 72079 72079 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold426 SAMTools SNP 72362 72362 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold426 SAMTools SNP 72389 72389 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 74582 74582 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 75366 75366 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold426 SAMTools SNP 75505 75505 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 75656 75656 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold426 SAMTools SNP 75822 75822 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold426 SAMTools SNP 78293 78293 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold426 SAMTools SNP 78589 78589 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold426 SAMTools SNP 79962 79962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C14%3BMQ%3D49%3BFQ%3D98%3BPV4%3D0.0049%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold426 SAMTools SNP 80008 80008 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold426 SAMTools SNP 80010 80010 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold426 SAMTools SNP 80167 80167 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold426 SAMTools SNP 80190 80190 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold426 SAMTools SNP 80482 80482 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold426 SAMTools SNP 81448 81448 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 81493 81493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold426 SAMTools SNP 81701 81701 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 82415 82415 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 82460 82460 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 83192 83192 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold426 SAMTools SNP 83211 83211 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold426 SAMTools SNP 83951 83951 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold426 SAMTools SNP 84108 84108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold426 SAMTools SNP 84376 84376 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold426 SAMTools SNP 86139 86139 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold426 SAMTools SNP 86472 86472 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold426 SAMTools SNP 86589 86589 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold426 SAMTools SNP 87037 87037 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold426 SAMTools SNP 136668 136668 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold426 SAMTools SNP 144216 144216 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C33%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.19%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold426 SAMTools SNP 144333 144333 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C4%2C24%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.71%2C2.1e-36%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold426 SAMTools SNP 144369 144369 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.24%2C0.42%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold426 SAMTools SNP 144393 144393 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42604 SAMTools SNP 31244 31244 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42604 SAMTools SNP 31323 31323 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42604 SAMTools SNP 31347 31347 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold42604 SAMTools SNP 35804 35804 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42604 SAMTools SNP 41758 41758 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C31%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C59:62 scaffold42604 SAMTools SNP 44004 44004 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42604 SAMTools SNP 44029 44029 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42604 SAMTools SNP 44483 44483 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.051%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold42604 SAMTools SNP 44501 44501 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42604 SAMTools SNP 45087 45087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.12%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42604 SAMTools SNP 45135 45135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold42604 SAMTools SNP 45461 45461 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.52%2C0.0011%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold42604 SAMTools SNP 45494 45494 189 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C12%2C213%2C0%2C210:33 scaffold42604 SAMTools SNP 45539 45539 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42604 SAMTools SNP 45720 45720 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42604 SAMTools SNP 45738 45738 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 45744 45744 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 49358 49358 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42604 SAMTools SNP 49400 49400 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42604 SAMTools SNP 49954 49954 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 50513 50513 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42604 SAMTools SNP 50543 50543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42604 SAMTools SNP 51050 51050 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42604 SAMTools SNP 51116 51116 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 51125 51125 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 56953 56953 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42604 SAMTools SNP 58783 58783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42604 SAMTools SNP 59363 59363 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42604 SAMTools SNP 59700 59700 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold42604 SAMTools SNP 59781 59781 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42604 SAMTools SNP 59787 59787 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.31%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42604 SAMTools SNP 60429 60429 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold42604 SAMTools SNP 60506 60506 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42604 SAMTools SNP 61379 61379 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.22%2C0.011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42604 SAMTools SNP 61384 61384 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.011%2C0.0014%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42604 SAMTools SNP 61399 61399 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42604 SAMTools SNP 61479 61479 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C33%2C0:63 scaffold42604 SAMTools SNP 61500 61500 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42604 SAMTools SNP 62731 62731 176 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.29%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C121:99 scaffold42604 SAMTools SNP 62785 62785 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42604 SAMTools SNP 63270 63270 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42604 SAMTools SNP 63330 63330 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold42604 SAMTools SNP 63715 63715 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42604 SAMTools SNP 64151 64151 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42604 SAMTools SNP 64169 64169 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold42604 SAMTools SNP 64175 64175 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold42604 SAMTools SNP 64680 64680 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C0.0049%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C177:62 scaffold42604 SAMTools SNP 65959 65959 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42604 SAMTools SNP 66010 66010 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42604 SAMTools SNP 66419 66419 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42604 SAMTools SNP 82891 82891 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold42604 SAMTools SNP 82930 82930 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold42604 SAMTools SNP 84354 84354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C7%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42604 SAMTools SNP 94782 94782 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C132%2C0:99 scaffold42604 SAMTools SNP 95462 95462 14.9 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C24%2C47%2C0%2C41:10 scaffold42604 SAMTools SNP 95510 95510 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C36%2C0:69 scaffold42604 SAMTools SNP 105113 105113 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42604 SAMTools SNP 111991 111991 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42604 SAMTools SNP 112887 112887 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42604 SAMTools SNP 112948 112948 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42604 SAMTools SNP 131331 131331 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold42604 SAMTools SNP 151292 151292 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42604 SAMTools SNP 154139 154139 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42604 SAMTools SNP 154143 154143 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42618 SAMTools SNP 39671 39671 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold42618 SAMTools SNP 43243 43243 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42618 SAMTools SNP 45289 45289 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.8e-06%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C66:69 scaffold42618 SAMTools SNP 73918 73918 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42618 SAMTools SNP 101681 101681 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42618 SAMTools SNP 101705 101705 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42618 SAMTools SNP 102089 102089 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42618 SAMTools SNP 103463 103463 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42618 SAMTools SNP 149736 149736 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42618 SAMTools SNP 149790 149790 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42618 SAMTools SNP 150263 150263 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42618 SAMTools SNP 150269 150269 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42618 SAMTools SNP 151122 151122 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42618 SAMTools SNP 151151 151151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42618 SAMTools SNP 151658 151658 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42618 SAMTools SNP 151674 151674 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42618 SAMTools SNP 151685 151685 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42618 SAMTools SNP 151705 151705 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42618 SAMTools SNP 152663 152663 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42618 SAMTools SNP 152672 152672 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.095%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C157:99 scaffold42618 SAMTools SNP 152763 152763 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold42618 SAMTools SNP 152790 152790 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold42618 SAMTools SNP 153056 153056 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42618 SAMTools SNP 155954 155954 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold42618 SAMTools SNP 156056 156056 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C169:99 scaffold42618 SAMTools SNP 156277 156277 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42618 SAMTools SNP 156472 156472 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D76.8%3BPV4%3D1%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C110:99 scaffold42618 SAMTools SNP 157453 157453 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C4%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42618 SAMTools SNP 157474 157474 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold42618 SAMTools SNP 164091 164091 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42618 SAMTools SNP 164254 164254 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C27%2C0:51 scaffold42618 SAMTools SNP 165537 165537 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold42618 SAMTools SNP 165572 165572 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold42618 SAMTools SNP 166072 166072 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C36%2C0:69 scaffold42618 SAMTools SNP 169253 169253 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42618 SAMTools SNP 169256 169256 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42618 SAMTools SNP 169421 169421 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42618 SAMTools SNP 169439 169439 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold42618 SAMTools SNP 169783 169783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42618 SAMTools SNP 172192 172192 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.013%2C1%2C1%2C6.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold42618 SAMTools SNP 172732 172732 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42634 SAMTools SNP 4647 4647 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42634 SAMTools SNP 4657 4657 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42634 SAMTools SNP 6356 6356 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold42634 SAMTools SNP 6740 6740 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.2e-07%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C223:28 scaffold42634 SAMTools SNP 7211 7211 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42634 SAMTools SNP 7949 7949 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42634 SAMTools SNP 7950 7950 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42634 SAMTools SNP 17812 17812 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42634 SAMTools SNP 18453 18453 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 18714 18714 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0.33%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42634 SAMTools SNP 19047 19047 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42634 SAMTools SNP 20138 20138 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 20177 20177 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 20427 20427 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42634 SAMTools SNP 20457 20457 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42634 SAMTools SNP 27829 27829 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold42634 SAMTools SNP 28861 28861 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C0%2C15%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.015%2C1%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold42634 SAMTools SNP 33788 33788 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.088%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C220:99 scaffold42634 SAMTools SNP 33803 33803 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42634 SAMTools SNP 33809 33809 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42634 SAMTools SNP 33821 33821 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42634 SAMTools SNP 34285 34285 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42634 SAMTools SNP 34330 34330 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C111:99 scaffold42634 SAMTools SNP 34387 34387 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold42634 SAMTools SNP 34393 34393 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C135:99 scaffold42634 SAMTools SNP 34399 34399 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold42634 SAMTools SNP 35305 35305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42634 SAMTools SNP 35602 35602 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.23%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 37149 37149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42634 SAMTools SNP 37158 37158 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold42634 SAMTools SNP 37364 37364 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.6%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold42634 SAMTools SNP 38655 38655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold42634 SAMTools SNP 38697 38697 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.52%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C180:99 scaffold42634 SAMTools SNP 38700 38700 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C173:99 scaffold42634 SAMTools SNP 38715 38715 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.52%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C221:99 scaffold42634 SAMTools SNP 40844 40844 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42634 SAMTools SNP 41672 41672 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C180:99 scaffold42634 SAMTools SNP 41675 41675 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.058%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42634 SAMTools SNP 41678 41678 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42634 SAMTools SNP 41997 41997 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42634 SAMTools SNP 42788 42788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 42821 42821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 42878 42878 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold42634 SAMTools SNP 42884 42884 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold42634 SAMTools SNP 43412 43412 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D77.9%3BPV4%3D1%2C0.22%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C107:99 scaffold42634 SAMTools SNP 43424 43424 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D1%2C1%2C0.0064%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C235:43 scaffold42634 SAMTools SNP 43466 43466 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C3%2C4%3BMQ%3D49%3BFQ%3D84%3BPV4%3D0.00028%2C0.00021%2C0.011%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C227:99 scaffold42634 SAMTools SNP 43542 43542 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C30%2C17%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.21%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 45709 45709 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C76%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold42634 SAMTools SNP 50747 50747 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42634 SAMTools SNP 50939 50939 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42634 SAMTools SNP 50953 50953 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D94.2%3BPV4%3D0.27%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C129:99 scaffold42634 SAMTools SNP 52688 52688 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.043%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C241:48 scaffold42634 SAMTools SNP 52697 52697 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.16%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C233:55 scaffold42634 SAMTools SNP 52761 52761 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold42634 SAMTools SNP 54694 54694 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 55176 55176 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42634 SAMTools SNP 55179 55179 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42634 SAMTools SNP 59095 59095 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C6%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold42634 SAMTools SNP 59914 59914 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.027%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold42634 SAMTools SNP 59929 59929 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C7%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.015%2C0.013%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42634 SAMTools SNP 59947 59947 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.09%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42634 SAMTools SNP 60252 60252 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C6%2C92%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 60441 60441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C96%2C10%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.26%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 60462 60462 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C94%2C4%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 60507 60507 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C245:63 scaffold42634 SAMTools SNP 60561 60561 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.088%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold42634 SAMTools SNP 60912 60912 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold42634 SAMTools SNP 60924 60924 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.016%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold42634 SAMTools SNP 60990 60990 93.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C21%2C0:39 scaffold42634 SAMTools SNP 61249 61249 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 61300 61300 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42634 SAMTools SNP 66483 66483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42634 SAMTools SNP 66540 66540 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-10%2C0.099%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 66934 66934 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C22%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C246:99 scaffold42634 SAMTools SNP 67002 67002 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42634 SAMTools SNP 67576 67576 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42634 SAMTools SNP 67591 67591 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.14%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold42634 SAMTools SNP 67615 67615 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42634 SAMTools SNP 67796 67796 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42634 SAMTools SNP 68339 68339 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C9%2C21%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.01%2C2.3e-25%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42634 SAMTools SNP 68840 68840 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 69276 69276 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42634 SAMTools SNP 69345 69345 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C57%2C0:99 scaffold42634 SAMTools SNP 69418 69418 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42634 SAMTools SNP 69429 69429 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 69438 69438 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C1%2C78%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 70425 70425 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42634 SAMTools SNP 70466 70466 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C167%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42634 SAMTools SNP 70479 70479 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42634 SAMTools SNP 71294 71294 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C11%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 71937 71937 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C53%2C5%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42634 SAMTools SNP 72889 72889 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.7%2C1.1e-14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42634 SAMTools SNP 72928 72928 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C22%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C2.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold42634 SAMTools SNP 77710 77710 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.28%3BPV4%3D1%2C0.021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C31:32 scaffold42634 SAMTools SNP 78063 78063 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42634 SAMTools SNP 78312 78312 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold42634 SAMTools SNP 79280 79280 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold42634 SAMTools SNP 91028 91028 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.47%2C1.1e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C74:40 scaffold42634 SAMTools SNP 91167 91167 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold42634 SAMTools SNP 101018 101018 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42634 SAMTools SNP 124200 124200 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold42634 SAMTools SNP 126315 126315 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C78%2C0:99 scaffold42640 SAMTools SNP 15890 15890 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42640 SAMTools SNP 15968 15968 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold42640 SAMTools SNP 16017 16017 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42640 SAMTools SNP 17324 17324 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42640 SAMTools SNP 17360 17360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.081%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42640 SAMTools SNP 19636 19636 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.035%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold42640 SAMTools SNP 19669 19669 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C4%2C19%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.12%2C0.13%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold42640 SAMTools SNP 20987 20987 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold42640 SAMTools SNP 21213 21213 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 21884 21884 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42640 SAMTools SNP 22184 22184 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42640 SAMTools SNP 22190 22190 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42640 SAMTools SNP 22244 22244 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 22245 22245 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42640 SAMTools SNP 22731 22731 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42640 SAMTools SNP 22740 22740 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42640 SAMTools SNP 22788 22788 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42640 SAMTools SNP 23902 23902 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 25534 25534 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42640 SAMTools SNP 25543 25543 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42640 SAMTools SNP 26654 26654 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42640 SAMTools SNP 26856 26856 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 28767 28767 10.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold42640 SAMTools SNP 29493 29493 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42640 SAMTools SNP 36146 36146 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold42640 SAMTools SNP 56700 56700 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 57481 57481 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42640 SAMTools SNP 57490 57490 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42640 SAMTools SNP 57502 57502 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold42640 SAMTools SNP 57607 57607 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D45%3BFQ%3D4.48%3BPV4%3D1%2C0.13%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C35:30 scaffold42640 SAMTools SNP 57984 57984 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 61608 61608 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42640 SAMTools SNP 62343 62343 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42640 SAMTools SNP 67812 67812 8.22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold42640 SAMTools SNP 67831 67831 49.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold42640 SAMTools SNP 67975 67975 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.29%2C8.7e-07%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C79:48 scaffold42640 SAMTools SNP 68320 68320 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold42640 SAMTools SNP 68646 68646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 69179 69179 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 69280 69280 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42640 SAMTools SNP 69312 69312 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C226:61 scaffold42640 SAMTools SNP 69331 69331 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.073%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C70:73 scaffold42640 SAMTools SNP 72217 72217 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42640 SAMTools SNP 72252 72252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42640 SAMTools SNP 72331 72331 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42640 SAMTools SNP 72392 72392 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42640 SAMTools SNP 148112 148112 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42640 SAMTools SNP 150232 150232 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42640 SAMTools SNP 156357 156357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42640 SAMTools SNP 156534 156534 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0003%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C247:55 scaffold42640 SAMTools SNP 170256 170256 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42640 SAMTools SNP 170286 170286 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C101:99 scaffold42640 SAMTools SNP 172360 172360 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold42640 SAMTools SNP 172383 172383 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C33%2C0:63 scaffold42640 SAMTools SNP 173377 173377 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D20%3BFQ%3D-4.87%3BPV4%3D0.5%2C0.14%2C0.18%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C24:28 scaffold42640 SAMTools SNP 173391 173391 4.85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D16%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C1%2C0:4 scaffold42640 SAMTools SNP 174091 174091 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D33%3BFQ%3D13.2%3BPV4%3D0.46%2C1%2C0.0056%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C102:42 scaffold42640 SAMTools SNP 174112 174112 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D37%3BFQ%3D12.3%3BPV4%3D0.44%2C1%2C0.0048%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C132:41 scaffold42640 SAMTools SNP 176589 176589 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold42648 SAMTools SNP 1936 1936 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 1978 1978 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42648 SAMTools SNP 2032 2032 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 2466 2466 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold42648 SAMTools SNP 2469 2469 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42648 SAMTools SNP 2512 2512 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42648 SAMTools SNP 2765 2765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42648 SAMTools SNP 3071 3071 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42648 SAMTools SNP 3157 3157 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C38:41 scaffold42648 SAMTools SNP 3216 3216 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C0.0052%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C171:99 scaffold42648 SAMTools SNP 3876 3876 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.096%2C0.19%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold42648 SAMTools SNP 3900 3900 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42648 SAMTools SNP 3966 3966 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42648 SAMTools SNP 4394 4394 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C16%2C6%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.31%2C1.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold42648 SAMTools SNP 4445 4445 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 4481 4481 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 4992 4992 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.61%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold42648 SAMTools SNP 5235 5235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold42648 SAMTools SNP 5259 5259 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42648 SAMTools SNP 5262 5262 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C207:99 scaffold42648 SAMTools SNP 5301 5301 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.55%2C0.027%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold42648 SAMTools SNP 6567 6567 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42648 SAMTools SNP 7072 7072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 7123 7123 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 7130 7130 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42648 SAMTools SNP 7637 7637 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C34%2C23%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 8080 8080 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.059%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 8209 8209 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42648 SAMTools SNP 8731 8731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 8854 8854 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42648 SAMTools SNP 8881 8881 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.64%2C3e-19%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42648 SAMTools SNP 9390 9390 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0146%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42648 SAMTools SNP 11269 11269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C41%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.18%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42648 SAMTools SNP 13485 13485 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42648 SAMTools SNP 19118 19118 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42648 SAMTools SNP 19131 19131 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42648 SAMTools SNP 27570 27570 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold42648 SAMTools SNP 31445 31445 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42648 SAMTools SNP 31967 31967 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42648 SAMTools SNP 32220 32220 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42648 SAMTools SNP 32227 32227 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42648 SAMTools SNP 35326 35326 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 35566 35566 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C154:80 scaffold42648 SAMTools SNP 35813 35813 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42648 SAMTools SNP 35865 35865 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42648 SAMTools SNP 36167 36167 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42648 SAMTools SNP 36177 36177 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 36233 36233 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold42648 SAMTools SNP 36445 36445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold42648 SAMTools SNP 36460 36460 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42648 SAMTools SNP 37607 37607 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D25.9%3BPV4%3D0.11%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C69:56 scaffold42648 SAMTools SNP 43747 43747 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C29:32 scaffold42648 SAMTools SNP 43774 43774 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold42648 SAMTools SNP 45031 45031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold42648 SAMTools SNP 45072 45072 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42648 SAMTools SNP 50044 50044 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.46%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C32:35 scaffold42648 SAMTools SNP 50101 50101 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold42648 SAMTools SNP 68519 68519 30.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold42648 SAMTools SNP 86902 86902 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42648 SAMTools SNP 86929 86929 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42648 SAMTools SNP 87346 87346 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold42648 SAMTools SNP 87418 87418 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42648 SAMTools SNP 87826 87826 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold42648 SAMTools SNP 87856 87856 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C35%2C1%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.1%2C3.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C31%2C0:55 scaffold42648 SAMTools SNP 87968 87968 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42648 SAMTools SNP 88118 88118 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C50%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42648 SAMTools SNP 88224 88224 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C107:99 scaffold42648 SAMTools SNP 88260 88260 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C1%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold42648 SAMTools SNP 88505 88505 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C0%2C7%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42648 SAMTools SNP 88946 88946 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C75%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C123:99 scaffold42648 SAMTools SNP 88958 88958 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C76%3BMQ%3D50%3BFQ%3D-218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C191%2C0:99 scaffold42648 SAMTools SNP 93229 93229 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C4%2C23%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42648 SAMTools SNP 93971 93971 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42648 SAMTools SNP 93997 93997 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C127%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42648 SAMTools SNP 96349 96349 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0180%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold42648 SAMTools SNP 100634 100634 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C24%2C0:45 scaffold42648 SAMTools SNP 107641 107641 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 107741 107741 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42648 SAMTools SNP 107928 107928 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 107942 107942 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold42648 SAMTools SNP 110909 110909 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42648 SAMTools SNP 111629 111629 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42648 SAMTools SNP 111953 111953 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold42648 SAMTools SNP 112951 112951 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C66%2C0:99 scaffold42648 SAMTools SNP 122418 122418 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42648 SAMTools SNP 122629 122629 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42648 SAMTools SNP 133336 133336 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold42648 SAMTools SNP 134530 134530 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold42648 SAMTools SNP 134873 134873 11.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold42648 SAMTools SNP 138887 138887 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42648 SAMTools SNP 167077 167077 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold42648 SAMTools SNP 170514 170514 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42648 SAMTools SNP 170955 170955 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42648 SAMTools SNP 175994 175994 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42648 SAMTools SNP 176148 176148 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42656 SAMTools SNP 82610 82610 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42656 SAMTools SNP 83886 83886 37.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold42656 SAMTools SNP 84331 84331 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold42656 SAMTools SNP 88506 88506 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42656 SAMTools SNP 96756 96756 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold42656 SAMTools SNP 97642 97642 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C7%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.77%2C3.9e-48%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42656 SAMTools SNP 97687 97687 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C47%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C253%2C0:99 scaffold42656 SAMTools SNP 97738 97738 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C12%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.55%2C1.4e-32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42656 SAMTools SNP 98642 98642 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold42656 SAMTools SNP 98681 98681 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C3%2C53%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.00062%2C3.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold42656 SAMTools SNP 103509 103509 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42656 SAMTools SNP 107704 107704 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C1%2C34%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1.2e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42656 SAMTools SNP 107907 107907 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C9%2C13%2C48%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1.9e-16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42656 SAMTools SNP 107919 107919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C21%2C9%2C49%3BMQ%3D41%3BFQ%3D225%3BPV4%3D3.2e-11%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42656 SAMTools SNP 108009 108009 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C99%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42656 SAMTools SNP 108812 108812 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D26%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold42656 SAMTools SNP 108893 108893 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold42656 SAMTools SNP 108899 108899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42656 SAMTools SNP 110216 110216 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D504%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C24%2C331%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D3e-22%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42656 SAMTools SNP 112938 112938 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold42656 SAMTools SNP 113014 113014 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42656 SAMTools SNP 113548 113548 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C200:99 scaffold42656 SAMTools SNP 113700 113700 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42656 SAMTools SNP 114096 114096 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C22%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.62%2C1.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold42656 SAMTools SNP 114253 114253 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C36%2C0:62 scaffold42656 SAMTools SNP 116217 116217 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42656 SAMTools SNP 116322 116322 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42656 SAMTools SNP 119360 119360 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42656 SAMTools SNP 125908 125908 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42656 SAMTools SNP 166462 166462 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold42656 SAMTools SNP 166971 166971 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold42656 SAMTools SNP 168658 168658 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42656 SAMTools SNP 179780 179780 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C11%2C0%3BMQ%3D46%3BFQ%3D-47%3BPV4%3D0.013%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C20%2C0:37 scaffold42662 SAMTools SNP 748 748 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42662 SAMTools SNP 1535 1535 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C5%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.38%2C0.47%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42662 SAMTools SNP 1537 1537 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C16%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.014%2C1%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold42662 SAMTools SNP 3664 3664 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.58%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42662 SAMTools SNP 4047 4047 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.0001%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 4089 4089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42662 SAMTools SNP 4158 4158 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold42662 SAMTools SNP 4354 4354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.12%2C0.036%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold42662 SAMTools SNP 4363 4363 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold42662 SAMTools SNP 4438 4438 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1.5e-24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 4803 4803 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 4812 4812 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42662 SAMTools SNP 4827 4827 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D192%3BPV4%3D2.6e-05%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold42662 SAMTools SNP 5159 5159 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00082%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold42662 SAMTools SNP 5207 5207 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42662 SAMTools SNP 5644 5644 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42662 SAMTools SNP 5668 5668 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42662 SAMTools SNP 5707 5707 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.051%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold42662 SAMTools SNP 5709 5709 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.55%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42662 SAMTools SNP 5900 5900 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42662 SAMTools SNP 6445 6445 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42662 SAMTools SNP 7094 7094 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold42662 SAMTools SNP 7398 7398 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 7411 7411 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42662 SAMTools SNP 18017 18017 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42662 SAMTools SNP 18032 18032 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C28%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 18294 18294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42662 SAMTools SNP 18649 18649 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42662 SAMTools SNP 18691 18691 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42662 SAMTools SNP 18700 18700 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42662 SAMTools SNP 19042 19042 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42662 SAMTools SNP 19053 19053 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C98:80 scaffold42662 SAMTools SNP 19280 19280 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 19303 19303 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42662 SAMTools SNP 19315 19315 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42662 SAMTools SNP 21116 21116 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C39%2C0:75 scaffold42662 SAMTools SNP 21330 21330 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42662 SAMTools SNP 21441 21441 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42662 SAMTools SNP 21786 21786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42662 SAMTools SNP 22015 22015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42662 SAMTools SNP 22145 22145 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C64%2C2%2C25%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.72%2C0.0066%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold42662 SAMTools SNP 22171 22171 154 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C77%2C0%2C30%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C252:99 scaffold42662 SAMTools SNP 28162 28162 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.05%2C0.29%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42662 SAMTools SNP 28173 28173 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.14%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 30549 30549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42662 SAMTools SNP 30659 30659 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42662 SAMTools SNP 30661 30661 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42662 SAMTools SNP 31089 31089 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C11%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.043%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42662 SAMTools SNP 31541 31541 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C0%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42662 SAMTools SNP 31542 31542 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C36%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42662 SAMTools SNP 31557 31557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42662 SAMTools SNP 31828 31828 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42662 SAMTools SNP 32033 32033 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.054%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold42662 SAMTools SNP 33222 33222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 33530 33530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42662 SAMTools SNP 34118 34118 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.084%2C7.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42662 SAMTools SNP 35804 35804 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0044%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 35819 35819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 36081 36081 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42662 SAMTools SNP 36547 36547 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C248:99 scaffold42662 SAMTools SNP 38793 38793 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42662 SAMTools SNP 41856 41856 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C114%2C0:99 scaffold42662 SAMTools SNP 41922 41922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42662 SAMTools SNP 44173 44173 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C11%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.002%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42662 SAMTools SNP 44243 44243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C7%2C62%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 44394 44394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C55%2C33%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 44518 44518 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C85%2C1%2C24%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.3%2C1.5e-09%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42662 SAMTools SNP 47056 47056 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42662 SAMTools SNP 53888 53888 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C10%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 53990 53990 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C214:80 scaffold42662 SAMTools SNP 54472 54472 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42662 SAMTools SNP 54675 54675 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold42662 SAMTools SNP 54914 54914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42662 SAMTools SNP 55097 55097 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42662 SAMTools SNP 55102 55102 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0013%2C8.3e-10%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42662 SAMTools SNP 55448 55448 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42662 SAMTools SNP 56039 56039 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D0.2%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold42662 SAMTools SNP 56079 56079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C31%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C83%2C0:99 scaffold42662 SAMTools SNP 56683 56683 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.26%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold42662 SAMTools SNP 57346 57346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.017%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 58913 58913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold42662 SAMTools SNP 59061 59061 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C6%2C51%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.32%2C8.4e-91%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold42662 SAMTools SNP 59303 59303 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C36%2C0:69 scaffold42662 SAMTools SNP 59701 59701 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42662 SAMTools SNP 68754 68754 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42662 SAMTools SNP 69030 69030 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C87%2C32%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1.4e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 69123 69123 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42662 SAMTools SNP 69141 69141 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C30%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-07%2C0.00032%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 69891 69891 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold42662 SAMTools SNP 69900 69900 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42662 SAMTools SNP 69940 69940 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42662 SAMTools SNP 70269 70269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 70840 70840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C24%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold42662 SAMTools SNP 73412 73412 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C22%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C4.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 73487 73487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 73493 73493 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 77816 77816 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C38%2C12%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 78203 78203 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.14%2C0.097%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold42662 SAMTools SNP 78281 78281 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C0.16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 80023 80023 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C13%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1.4e-07%2C2.1e-11%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42662 SAMTools SNP 83030 83030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C8%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 83060 83060 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C7%2C47%2C8%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.26%2C4.9e-50%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold42662 SAMTools SNP 83114 83114 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C30%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42662 SAMTools SNP 83953 83953 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C195:46 scaffold42662 SAMTools SNP 83978 83978 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C205:63 scaffold42662 SAMTools SNP 84076 84076 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold42662 SAMTools SNP 84139 84139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold42662 SAMTools SNP 84907 84907 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C2%2C5%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42662 SAMTools SNP 84919 84919 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C2%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold42662 SAMTools SNP 86393 86393 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C4%3BMQ%3D43%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42662 SAMTools SNP 92651 92651 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42662 SAMTools SNP 94860 94860 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C126:99 scaffold42662 SAMTools SNP 96973 96973 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.082%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42662 SAMTools SNP 99014 99014 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42662 SAMTools SNP 99954 99954 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C27%2C0:51 scaffold42662 SAMTools SNP 104552 104552 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold42662 SAMTools SNP 104576 104576 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42662 SAMTools SNP 107505 107505 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42662 SAMTools SNP 107511 107511 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42662 SAMTools SNP 163385 163385 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42662 SAMTools SNP 163536 163536 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42662 SAMTools SNP 180877 180877 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C2.7e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C193:42 scaffold42662 SAMTools SNP 181061 181061 56.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold42674 SAMTools SNP 969 969 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 2061 2061 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 8408 8408 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.24%2C0.19%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42674 SAMTools SNP 8551 8551 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.29%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold42674 SAMTools SNP 19946 19946 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C21%2C0:39 scaffold42674 SAMTools SNP 39881 39881 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold42674 SAMTools SNP 42223 42223 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42674 SAMTools SNP 42308 42308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42674 SAMTools SNP 42347 42347 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42674 SAMTools SNP 42943 42943 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold42674 SAMTools SNP 44303 44303 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C59%2C14%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0013%2C3.8e-28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42674 SAMTools SNP 44330 44330 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C65%2C3%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.097%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42674 SAMTools SNP 44679 44679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C43%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42674 SAMTools SNP 44710 44710 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.072%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42674 SAMTools SNP 44730 44730 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C0%2C37%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1.7e-07%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42674 SAMTools SNP 45068 45068 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42674 SAMTools SNP 45339 45339 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.42%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42674 SAMTools SNP 45358 45358 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42674 SAMTools SNP 45496 45496 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold42674 SAMTools SNP 45821 45821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42674 SAMTools SNP 46041 46041 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42674 SAMTools SNP 46052 46052 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.082%2C0.002%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42674 SAMTools SNP 46056 46056 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.017%2C0.00019%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42674 SAMTools SNP 46307 46307 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C16%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.66%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold42674 SAMTools SNP 46603 46603 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C15%2C16%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.011%2C9.5e-55%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold42674 SAMTools SNP 46636 46636 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C3%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.1%2C2.6e-29%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42674 SAMTools SNP 46771 46771 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold42674 SAMTools SNP 50049 50049 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42674 SAMTools SNP 50185 50185 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold42674 SAMTools SNP 50209 50209 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42674 SAMTools SNP 50523 50523 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.11%2C4e-07%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42674 SAMTools SNP 50703 50703 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C2%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42674 SAMTools SNP 50727 50727 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42674 SAMTools SNP 50760 50760 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C14%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.00046%2C0.0016%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42674 SAMTools SNP 50897 50897 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold42674 SAMTools SNP 53489 53489 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold42674 SAMTools SNP 53935 53935 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D73.8%3BPV4%3D1%2C0.3%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C107:99 scaffold42674 SAMTools SNP 54803 54803 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C93:96 scaffold42674 SAMTools SNP 54805 54805 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.059%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold42674 SAMTools SNP 54824 54824 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C148:99 scaffold42674 SAMTools SNP 54875 54875 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold42674 SAMTools SNP 56329 56329 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42674 SAMTools SNP 56380 56380 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42674 SAMTools SNP 56394 56394 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0026%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold42674 SAMTools SNP 56820 56820 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42674 SAMTools SNP 57596 57596 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.0081%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42674 SAMTools SNP 57599 57599 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42674 SAMTools SNP 97347 97347 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42674 SAMTools SNP 98388 98388 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 98402 98402 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42674 SAMTools SNP 107988 107988 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.37%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold42674 SAMTools SNP 109346 109346 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42674 SAMTools SNP 113979 113979 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 116485 116485 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 118916 118916 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42674 SAMTools SNP 120905 120905 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42674 SAMTools SNP 120949 120949 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42674 SAMTools SNP 121002 121002 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42674 SAMTools SNP 121353 121353 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold42674 SAMTools SNP 126289 126289 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C18:21 scaffold42674 SAMTools SNP 126483 126483 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.061%2C1.6e-07%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C127:63 scaffold42674 SAMTools SNP 127417 127417 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C156:99 scaffold42674 SAMTools SNP 127585 127585 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C213:99 scaffold42674 SAMTools SNP 132433 132433 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C42%2C0:81 scaffold42674 SAMTools SNP 132593 132593 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42674 SAMTools SNP 133387 133387 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42674 SAMTools SNP 133652 133652 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42674 SAMTools SNP 134491 134491 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42674 SAMTools SNP 134518 134518 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 135039 135039 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42674 SAMTools SNP 137851 137851 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C241:99 scaffold42674 SAMTools SNP 138320 138320 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42674 SAMTools SNP 138342 138342 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42674 SAMTools SNP 138408 138408 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42674 SAMTools SNP 138426 138426 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold42674 SAMTools SNP 170402 170402 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 14208 14208 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 14229 14229 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 14280 14280 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42684 SAMTools SNP 14300 14300 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42684 SAMTools SNP 17682 17682 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 17738 17738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C10%2C44%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 23888 23888 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold42684 SAMTools SNP 23951 23951 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold42684 SAMTools SNP 28656 28656 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold42684 SAMTools SNP 28708 28708 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 28855 28855 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 50231 50231 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C69%2C0:98 scaffold42684 SAMTools SNP 50635 50635 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 50645 50645 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42684 SAMTools SNP 50820 50820 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold42684 SAMTools SNP 50832 50832 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 50868 50868 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C50:53 scaffold42684 SAMTools SNP 51201 51201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42684 SAMTools SNP 51216 51216 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C134:99 scaffold42684 SAMTools SNP 51396 51396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42684 SAMTools SNP 51405 51405 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42684 SAMTools SNP 51534 51534 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D2.8e-05%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold42684 SAMTools SNP 51560 51560 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D3.2e-07%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C244:99 scaffold42684 SAMTools SNP 51567 51567 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D4.5e-07%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C172:99 scaffold42684 SAMTools SNP 51874 51874 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C22%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42684 SAMTools SNP 52251 52251 45.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold42684 SAMTools SNP 52532 52532 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C124:99 scaffold42684 SAMTools SNP 54799 54799 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C22%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold42684 SAMTools SNP 54820 54820 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C19%2C32%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.4e-09%2C0.16%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold42684 SAMTools SNP 55494 55494 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C38%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42684 SAMTools SNP 55522 55522 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C34%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C5.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 55598 55598 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42684 SAMTools SNP 55623 55623 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C36%2C2%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.089%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42684 SAMTools SNP 55792 55792 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C2%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.00023%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42684 SAMTools SNP 55794 55794 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C50%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D9.9e-05%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold42684 SAMTools SNP 56302 56302 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C51%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0018%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42684 SAMTools SNP 56344 56344 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C49%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold42684 SAMTools SNP 56350 56350 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C47%2C1%2C6%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.49%2C0.081%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42684 SAMTools SNP 56362 56362 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42684 SAMTools SNP 56488 56488 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42684 SAMTools SNP 56501 56501 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold42684 SAMTools SNP 56775 56775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 56947 56947 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 57019 57019 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.45%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold42684 SAMTools SNP 57058 57058 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C238:99 scaffold42684 SAMTools SNP 57736 57736 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42684 SAMTools SNP 57778 57778 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42684 SAMTools SNP 57811 57811 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42684 SAMTools SNP 57829 57829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42684 SAMTools SNP 58311 58311 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42684 SAMTools SNP 58338 58338 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42684 SAMTools SNP 58404 58404 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42684 SAMTools SNP 58419 58419 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C21%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.077%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C152:99 scaffold42684 SAMTools SNP 58777 58777 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42684 SAMTools SNP 58819 58819 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C240:99 scaffold42684 SAMTools SNP 59208 59208 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42684 SAMTools SNP 59217 59217 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42684 SAMTools SNP 59352 59352 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 59363 59363 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42684 SAMTools SNP 59981 59981 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C17%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C8.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C232:69 scaffold42684 SAMTools SNP 62227 62227 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 62267 62267 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold42684 SAMTools SNP 62286 62286 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42684 SAMTools SNP 62524 62524 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C41%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.44%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold42684 SAMTools SNP 62677 62677 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 62725 62725 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C238:99 scaffold42684 SAMTools SNP 63092 63092 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C195:54 scaffold42684 SAMTools SNP 63181 63181 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold42684 SAMTools SNP 63251 63251 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C181:28 scaffold42684 SAMTools SNP 64374 64374 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold42684 SAMTools SNP 64381 64381 65.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold42684 SAMTools SNP 64975 64975 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C21%2C0:39 scaffold42684 SAMTools SNP 64979 64979 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C21%2C0:39 scaffold42684 SAMTools SNP 65223 65223 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 65857 65857 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold42684 SAMTools SNP 65914 65914 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.012%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C176:80 scaffold42684 SAMTools SNP 65977 65977 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 66000 66000 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 75561 75561 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42684 SAMTools SNP 75575 75575 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42684 SAMTools SNP 75596 75596 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42684 SAMTools SNP 75620 75620 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C96:99 scaffold42684 SAMTools SNP 75653 75653 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold42684 SAMTools SNP 75812 75812 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42684 SAMTools SNP 75935 75935 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.011%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C150:99 scaffold42684 SAMTools SNP 77617 77617 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42684 SAMTools SNP 77673 77673 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42684 SAMTools SNP 78326 78326 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 78687 78687 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42684 SAMTools SNP 78695 78695 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42684 SAMTools SNP 79411 79411 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 79428 79428 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42684 SAMTools SNP 79797 79797 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42684 SAMTools SNP 80771 80771 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 81504 81504 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C246:99 scaffold42684 SAMTools SNP 81550 81550 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold42684 SAMTools SNP 81563 81563 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.45%2C0.2%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C164:99 scaffold42684 SAMTools SNP 81576 81576 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold42684 SAMTools SNP 81600 81600 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C250:99 scaffold42684 SAMTools SNP 81970 81970 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C69:72 scaffold42684 SAMTools SNP 81988 81988 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42684 SAMTools SNP 82408 82408 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 82426 82426 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 82480 82480 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42684 SAMTools SNP 82510 82510 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42684 SAMTools SNP 82768 82768 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42684 SAMTools SNP 82793 82793 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 82811 82811 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42684 SAMTools SNP 82835 82835 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 83314 83314 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 83644 83644 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 83847 83847 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42684 SAMTools SNP 83886 83886 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 85569 85569 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42684 SAMTools SNP 85712 85712 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 85716 85716 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 85790 85790 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42684 SAMTools SNP 85898 85898 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42684 SAMTools SNP 85961 85961 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold42684 SAMTools SNP 89605 89605 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C0.31%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold42684 SAMTools SNP 89645 89645 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42684 SAMTools SNP 89704 89704 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42684 SAMTools SNP 89743 89743 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42684 SAMTools SNP 89980 89980 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42684 SAMTools SNP 90109 90109 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42684 SAMTools SNP 90343 90343 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.4%2C0.066%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C110:90 scaffold42684 SAMTools SNP 90806 90806 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold42684 SAMTools SNP 90834 90834 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D10.9%3BPV4%3D0.25%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold42684 SAMTools SNP 91202 91202 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42684 SAMTools SNP 92157 92157 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold42684 SAMTools SNP 92273 92273 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42684 SAMTools SNP 92476 92476 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42684 SAMTools SNP 92509 92509 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42684 SAMTools SNP 96548 96548 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 96787 96787 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold42684 SAMTools SNP 96826 96826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 101598 101598 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 102536 102536 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 103072 103072 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 103279 103279 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 103364 103364 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 113889 113889 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C5%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold42684 SAMTools SNP 113892 113892 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.32%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42684 SAMTools SNP 114066 114066 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42684 SAMTools SNP 117339 117339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C118%2C41%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 118899 118899 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C101%2C70%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 119281 119281 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C98%2C32%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 119534 119534 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C0%2C35%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.7e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42684 SAMTools SNP 120280 120280 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold42684 SAMTools SNP 123394 123394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42684 SAMTools SNP 123686 123686 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42684 SAMTools SNP 123747 123747 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42684 SAMTools SNP 131793 131793 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0032%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C238:48 scaffold42684 SAMTools SNP 132338 132338 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42684 SAMTools SNP 139453 139453 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42684 SAMTools SNP 139774 139774 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42684 SAMTools SNP 139807 139807 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C227:99 scaffold42684 SAMTools SNP 139828 139828 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42684 SAMTools SNP 143930 143930 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42684 SAMTools SNP 143933 143933 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42684 SAMTools SNP 143996 143996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42684 SAMTools SNP 149238 149238 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C218:99 scaffold42684 SAMTools SNP 149277 149277 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C0.27%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold42684 SAMTools SNP 149281 149281 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold42684 SAMTools SNP 149995 149995 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42684 SAMTools SNP 150533 150533 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42684 SAMTools SNP 150549 150549 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C69:34 scaffold42684 SAMTools SNP 151364 151364 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42684 SAMTools SNP 151895 151895 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 151900 151900 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42684 SAMTools SNP 152102 152102 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42684 SAMTools SNP 153539 153539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold42684 SAMTools SNP 153568 153568 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C21%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.00046%2C0.43%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold42684 SAMTools SNP 156053 156053 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42684 SAMTools SNP 165853 165853 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C149:39 scaffold42684 SAMTools SNP 169999 169999 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold42684 SAMTools SNP 170024 170024 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold42684 SAMTools SNP 170074 170074 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42684 SAMTools SNP 170079 170079 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42684 SAMTools SNP 177062 177062 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold42684 SAMTools SNP 178972 178972 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42684 SAMTools SNP 182119 182119 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.0057%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C127:39 scaffold427 SAMTools SNP 4122 4122 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold427 SAMTools SNP 4213 4213 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold427 SAMTools SNP 4229 4229 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold427 SAMTools SNP 6594 6594 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold427 SAMTools SNP 7200 7200 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold427 SAMTools SNP 12614 12614 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C44%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.043%2C1.1e-44%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C72:43 scaffold427 SAMTools SNP 16564 16564 30.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold427 SAMTools SNP 18265 18265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold427 SAMTools SNP 23671 23671 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold427 SAMTools SNP 23707 23707 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C242:99 scaffold427 SAMTools SNP 26285 26285 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold427 SAMTools SNP 26316 26316 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C0.11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold427 SAMTools SNP 27315 27315 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold427 SAMTools SNP 42181 42181 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D9.45%3BPV4%3D0.011%2C7.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C53:37 scaffold427 SAMTools SNP 43165 43165 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.43%2C3.5e-25%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold427 SAMTools SNP 46291 46291 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C45%2C0:87 scaffold427 SAMTools SNP 46312 46312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold427 SAMTools SNP 46425 46425 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C0%2C18%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.02%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold427 SAMTools SNP 50137 50137 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 50167 50167 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C5%2C8%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.55%2C7.5e-06%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold427 SAMTools SNP 50679 50679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 50703 50703 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C20%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C3.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 51486 51486 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C36%2C0:69 scaffold427 SAMTools SNP 51541 51541 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C18%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.01%2C2.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold427 SAMTools SNP 51690 51690 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold427 SAMTools SNP 51806 51806 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C36%2C0:69 scaffold427 SAMTools SNP 53433 53433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C6%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.29%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 54055 54055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold427 SAMTools SNP 54079 54079 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.33%2C0.22%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold427 SAMTools SNP 54082 54082 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold427 SAMTools SNP 54109 54109 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold427 SAMTools SNP 54890 54890 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold427 SAMTools SNP 54913 54913 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D65.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C93:96 scaffold427 SAMTools SNP 54954 54954 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold427 SAMTools SNP 82589 82589 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold427 SAMTools SNP 82610 82610 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold427 SAMTools SNP 90877 90877 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold427 SAMTools SNP 91314 91314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold427 SAMTools SNP 91440 91440 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold427 SAMTools SNP 91923 91923 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold427 SAMTools SNP 91930 91930 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold427 SAMTools SNP 92110 92110 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold427 SAMTools SNP 92535 92535 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 94558 94558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C36%2C39%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 94730 94730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold427 SAMTools SNP 94833 94833 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C9%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold427 SAMTools SNP 94987 94987 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold427 SAMTools SNP 94996 94996 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold427 SAMTools SNP 95011 95011 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold427 SAMTools SNP 95431 95431 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold427 SAMTools SNP 95433 95433 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold427 SAMTools SNP 95508 95508 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold427 SAMTools SNP 95787 95787 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold427 SAMTools SNP 96022 96022 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold427 SAMTools SNP 96055 96055 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C120%2C0:99 scaffold427 SAMTools SNP 150273 150273 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C112:34 scaffold427 SAMTools SNP 156639 156639 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C223%2C0:99 scaffold427 SAMTools SNP 156690 156690 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C199%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C255%2C0:99 scaffold427 SAMTools SNP 156701 156701 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C216%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold427 SAMTools SNP 156912 156912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1787%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D53%2C0%2C1591%2C114%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.046%2C1e-232%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold427 SAMTools SNP 157224 157224 14.3 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C31%2C13%2C37%2C0%2C34:28 scaffold427 SAMTools SNP 157324 157324 32.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold427 SAMTools SNP 157489 157489 22.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold42704 SAMTools SNP 257 257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42704 SAMTools SNP 305 305 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42704 SAMTools SNP 17304 17304 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42704 SAMTools SNP 17880 17880 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42704 SAMTools SNP 24234 24234 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42704 SAMTools SNP 24271 24271 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold42704 SAMTools SNP 25524 25524 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C227:99 scaffold42704 SAMTools SNP 25552 25552 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42704 SAMTools SNP 26630 26630 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.067%2C0.1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C138:49 scaffold42704 SAMTools SNP 30872 30872 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42704 SAMTools SNP 30903 30903 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42704 SAMTools SNP 33691 33691 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold42704 SAMTools SNP 176843 176843 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42704 SAMTools SNP 176897 176897 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42704 SAMTools SNP 177373 177373 6.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D26%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C66%2C0:51 scaffold42726 SAMTools SNP 1363 1363 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42726 SAMTools SNP 1393 1393 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42726 SAMTools SNP 1775 1775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42726 SAMTools SNP 1819 1819 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42726 SAMTools SNP 14302 14302 5.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold42726 SAMTools SNP 17754 17754 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold42726 SAMTools SNP 19607 19607 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42726 SAMTools SNP 20607 20607 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold42726 SAMTools SNP 21941 21941 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C175%2C0:99 scaffold42726 SAMTools SNP 22107 22107 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C117%2C0:99 scaffold42726 SAMTools SNP 22593 22593 8.44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42726 SAMTools SNP 24435 24435 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42726 SAMTools SNP 24443 24443 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42726 SAMTools SNP 24965 24965 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42726 SAMTools SNP 24969 24969 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42726 SAMTools SNP 25014 25014 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42726 SAMTools SNP 25036 25036 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold42726 SAMTools SNP 25480 25480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 25512 25512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 26272 26272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C27%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold42726 SAMTools SNP 27451 27451 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42726 SAMTools SNP 27475 27475 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42726 SAMTools SNP 27972 27972 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42726 SAMTools SNP 29347 29347 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42726 SAMTools SNP 29388 29388 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.41%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C216:87 scaffold42726 SAMTools SNP 31275 31275 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0:99 scaffold42726 SAMTools SNP 31736 31736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 32132 32132 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C53%2C12%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D2.5e-08%2C1.9e-23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42726 SAMTools SNP 32272 32272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C26%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42726 SAMTools SNP 32511 32511 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42726 SAMTools SNP 32530 32530 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42726 SAMTools SNP 106274 106274 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42726 SAMTools SNP 129966 129966 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42726 SAMTools SNP 134985 134985 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42726 SAMTools SNP 147837 147837 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold42726 SAMTools SNP 147944 147944 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 147975 147975 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 148662 148662 24.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D688%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold42726 SAMTools SNP 148692 148692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C223%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42726 SAMTools SNP 148911 148911 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42726 SAMTools SNP 152029 152029 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42726 SAMTools SNP 152158 152158 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C40%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold42726 SAMTools SNP 152161 152161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42726 SAMTools SNP 167706 167706 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42726 SAMTools SNP 172552 172552 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold42726 SAMTools SNP 178676 178676 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42726 SAMTools SNP 178697 178697 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42726 SAMTools SNP 179163 179163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C26%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42726 SAMTools SNP 179202 179202 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C10%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C1.6e-06%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42726 SAMTools SNP 179697 179697 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42726 SAMTools SNP 179981 179981 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42726 SAMTools SNP 179990 179990 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.38%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C97:60 scaffold42726 SAMTools SNP 180019 180019 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold42726 SAMTools SNP 180218 180218 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold42726 SAMTools SNP 180680 180680 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold42726 SAMTools SNP 180688 180688 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42726 SAMTools SNP 181093 181093 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.16%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold42726 SAMTools SNP 181421 181421 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.0033%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C145:99 scaffold42726 SAMTools SNP 181831 181831 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42726 SAMTools SNP 181906 181906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42726 SAMTools SNP 182389 182389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42726 SAMTools SNP 182422 182422 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42726 SAMTools SNP 182565 182565 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42726 SAMTools SNP 182833 182833 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 7002 7002 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D46%3BFQ%3D-39%3BPV4%3D0.14%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold42740 SAMTools SNP 34568 34568 17.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold42740 SAMTools SNP 34593 34593 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42740 SAMTools SNP 43172 43172 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42740 SAMTools SNP 43405 43405 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42740 SAMTools SNP 43481 43481 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42740 SAMTools SNP 43997 43997 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 44080 44080 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 44498 44498 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 44654 44654 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 45867 45867 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold42740 SAMTools SNP 46119 46119 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42740 SAMTools SNP 46533 46533 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42740 SAMTools SNP 53185 53185 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42740 SAMTools SNP 53200 53200 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42740 SAMTools SNP 53282 53282 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42740 SAMTools SNP 64433 64433 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 65480 65480 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42740 SAMTools SNP 65481 65481 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42740 SAMTools SNP 65756 65756 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42740 SAMTools SNP 71848 71848 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42740 SAMTools SNP 79362 79362 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42740 SAMTools SNP 79387 79387 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42740 SAMTools SNP 82862 82862 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42740 SAMTools SNP 83243 83243 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42740 SAMTools SNP 83291 83291 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42740 SAMTools SNP 83318 83318 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42740 SAMTools SNP 85171 85171 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 85187 85187 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 87826 87826 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42740 SAMTools SNP 87844 87844 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42740 SAMTools SNP 88509 88509 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42740 SAMTools SNP 88606 88606 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 88634 88634 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 89178 89178 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 89183 89183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 93245 93245 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 99311 99311 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 101950 101950 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42740 SAMTools SNP 102077 102077 7.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42740 SAMTools SNP 103815 103815 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 114008 114008 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2e-05%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42740 SAMTools SNP 114529 114529 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42740 SAMTools SNP 115226 115226 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42740 SAMTools SNP 115244 115244 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42740 SAMTools SNP 115659 115659 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.1%2C1e-06%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold42740 SAMTools SNP 121165 121165 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold42740 SAMTools SNP 121209 121209 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C235:71 scaffold42740 SAMTools SNP 121240 121240 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.007%2C0.46%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42740 SAMTools SNP 121276 121276 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold42740 SAMTools SNP 123551 123551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold42740 SAMTools SNP 123564 123564 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42740 SAMTools SNP 123590 123590 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C27%2C0:51 scaffold42740 SAMTools SNP 123689 123689 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42740 SAMTools SNP 123698 123698 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42740 SAMTools SNP 125735 125735 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.083%2C0.022%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42740 SAMTools SNP 127046 127046 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42740 SAMTools SNP 128659 128659 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C254:99 scaffold42740 SAMTools SNP 130418 130418 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42740 SAMTools SNP 130499 130499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C2%2C33%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42740 SAMTools SNP 131542 131542 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42740 SAMTools SNP 139001 139001 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.33%2C0.00088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C138:33 scaffold42740 SAMTools SNP 139305 139305 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42740 SAMTools SNP 173899 173899 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold42740 SAMTools SNP 173950 173950 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42740 SAMTools SNP 178800 178800 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C20:23 scaffold42740 SAMTools SNP 178901 178901 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42740 SAMTools SNP 179321 179321 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.59%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold42740 SAMTools SNP 181632 181632 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold42754 SAMTools SNP 52770 52770 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42754 SAMTools SNP 52794 52794 21.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold42754 SAMTools SNP 74328 74328 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42754 SAMTools SNP 75608 75608 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42754 SAMTools SNP 75635 75635 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42754 SAMTools SNP 77908 77908 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold42754 SAMTools SNP 85722 85722 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42754 SAMTools SNP 86286 86286 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C210:28 scaffold42754 SAMTools SNP 87143 87143 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42754 SAMTools SNP 123377 123377 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42754 SAMTools SNP 124079 124079 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C98:77 scaffold42754 SAMTools SNP 124084 124084 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold42754 SAMTools SNP 124525 124525 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42754 SAMTools SNP 124785 124785 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold42754 SAMTools SNP 129632 129632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42754 SAMTools SNP 130628 130628 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C36%2C0:69 scaffold42754 SAMTools SNP 133984 133984 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42754 SAMTools SNP 134014 134014 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42754 SAMTools SNP 135488 135488 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 136750 136750 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.26%2C0.17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold42754 SAMTools SNP 137945 137945 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C6%2C52%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.038%2C4.3e-22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold42754 SAMTools SNP 138785 138785 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 139693 139693 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C99%2C0:99 scaffold42754 SAMTools SNP 139785 139785 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.072%2C3.9e-32%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42754 SAMTools SNP 139990 139990 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C11%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.35%2C9.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42754 SAMTools SNP 140313 140313 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C12%2C19%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C2.4e-32%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold42754 SAMTools SNP 140509 140509 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D3.8e-09%2C8.2e-25%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42754 SAMTools SNP 140809 140809 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C84%2C0:99 scaffold42754 SAMTools SNP 141119 141119 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C44%2C40%2C29%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.068%2C6.5e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold42754 SAMTools SNP 141432 141432 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.22%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold42754 SAMTools SNP 142531 142531 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.061%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold42754 SAMTools SNP 142620 142620 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold42754 SAMTools SNP 142914 142914 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C2%2C9%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42754 SAMTools SNP 143186 143186 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C49%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold42754 SAMTools SNP 143240 143240 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C4%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.3%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold42754 SAMTools SNP 143300 143300 26.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold42754 SAMTools SNP 143450 143450 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42754 SAMTools SNP 143477 143477 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 143829 143829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00019%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 145293 145293 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42754 SAMTools SNP 145510 145510 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42754 SAMTools SNP 146664 146664 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42754 SAMTools SNP 150497 150497 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.62%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42754 SAMTools SNP 150934 150934 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.42%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42754 SAMTools SNP 150937 150937 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.00047%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42754 SAMTools SNP 153281 153281 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42754 SAMTools SNP 154829 154829 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 154892 154892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 155478 155478 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.61%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42754 SAMTools SNP 155509 155509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 156139 156139 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42754 SAMTools SNP 156289 156289 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42754 SAMTools SNP 156754 156754 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42754 SAMTools SNP 156826 156826 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.0021%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42754 SAMTools SNP 156958 156958 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.26%2C6.7e-18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42754 SAMTools SNP 157120 157120 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.17%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold42754 SAMTools SNP 159995 159995 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold42754 SAMTools SNP 160053 160053 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.096%2C0.008%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42754 SAMTools SNP 160070 160070 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.46%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42754 SAMTools SNP 160073 160073 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42754 SAMTools SNP 160694 160694 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42754 SAMTools SNP 160733 160733 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.041%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42754 SAMTools SNP 160799 160799 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold42754 SAMTools SNP 160913 160913 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold42754 SAMTools SNP 160937 160937 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0053%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold42754 SAMTools SNP 162650 162650 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold42754 SAMTools SNP 179809 179809 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold42754 SAMTools SNP 179818 179818 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42754 SAMTools SNP 180184 180184 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42754 SAMTools SNP 182803 182803 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42754 SAMTools SNP 183142 183142 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C234:99 scaffold42760 SAMTools SNP 410 410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 412 412 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 1066 1066 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C235:99 scaffold42760 SAMTools SNP 2156 2156 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42760 SAMTools SNP 2163 2163 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C71:68 scaffold42760 SAMTools SNP 2214 2214 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C121:74 scaffold42760 SAMTools SNP 2265 2265 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold42760 SAMTools SNP 2809 2809 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold42760 SAMTools SNP 2839 2839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold42760 SAMTools SNP 3154 3154 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.28%2C0.012%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold42760 SAMTools SNP 3393 3393 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.13%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42760 SAMTools SNP 4032 4032 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42760 SAMTools SNP 4842 4842 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 5626 5626 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C162:99 scaffold42760 SAMTools SNP 5950 5950 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 5982 5982 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 6012 6012 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold42760 SAMTools SNP 6054 6054 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42760 SAMTools SNP 6349 6349 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 6460 6460 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42760 SAMTools SNP 6997 6997 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42760 SAMTools SNP 7102 7102 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C8%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.47%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold42760 SAMTools SNP 9132 9132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42760 SAMTools SNP 13158 13158 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42760 SAMTools SNP 13635 13635 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42760 SAMTools SNP 14386 14386 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42760 SAMTools SNP 22173 22173 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42760 SAMTools SNP 24545 24545 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42760 SAMTools SNP 30405 30405 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 30432 30432 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 30647 30647 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.17%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold42760 SAMTools SNP 43670 43670 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C158:33 scaffold42760 SAMTools SNP 43753 43753 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C140:30 scaffold42760 SAMTools SNP 46671 46671 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42760 SAMTools SNP 47229 47229 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold42760 SAMTools SNP 47261 47261 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.087%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42760 SAMTools SNP 47293 47293 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C5%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold42760 SAMTools SNP 47786 47786 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C36%3BMQ%3D49%3BFQ%3D222%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42760 SAMTools SNP 48262 48262 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 49461 49461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 51984 51984 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C9%2C12%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.7e-29%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42760 SAMTools SNP 56157 56157 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42760 SAMTools SNP 56171 56171 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42760 SAMTools SNP 60631 60631 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42760 SAMTools SNP 63683 63683 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42760 SAMTools SNP 64257 64257 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42760 SAMTools SNP 64613 64613 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42760 SAMTools SNP 64637 64637 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold42760 SAMTools SNP 64933 64933 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold42760 SAMTools SNP 65358 65358 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42760 SAMTools SNP 65765 65765 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42760 SAMTools SNP 69038 69038 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold42760 SAMTools SNP 77811 77811 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold42760 SAMTools SNP 77843 77843 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42760 SAMTools SNP 79407 79407 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D48.7%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C76:79 scaffold42760 SAMTools SNP 79724 79724 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold42760 SAMTools SNP 80852 80852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 80945 80945 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.35%2C0.032%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold42760 SAMTools SNP 81532 81532 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D39%2C1%2C0%2C4%3BMQ%3D21%3BFQ%3D6.96%3BPV4%3D3.7e-05%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C54:33 scaffold42760 SAMTools SNP 82460 82460 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42760 SAMTools SNP 88057 88057 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.17%2C1%2C1.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42760 SAMTools SNP 88113 88113 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D275%2C4%2C274%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 88434 88434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C9%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C83%2C0:99 scaffold42760 SAMTools SNP 88830 88830 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C67%2C243%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.5%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42760 SAMTools SNP 88857 88857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42760 SAMTools SNP 89980 89980 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C29%2C0%2C13%3BMQ%3D45%3BFQ%3D56%3BPV4%3D8.4e-05%2C0.043%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold42760 SAMTools SNP 90186 90186 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42760 SAMTools SNP 91724 91724 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42760 SAMTools SNP 94092 94092 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42760 SAMTools SNP 94726 94726 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C12%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold42760 SAMTools SNP 95281 95281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42760 SAMTools SNP 95284 95284 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.34%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42760 SAMTools SNP 95311 95311 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold42760 SAMTools SNP 95419 95419 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold42760 SAMTools SNP 95506 95506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42760 SAMTools SNP 95902 95902 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42760 SAMTools SNP 95956 95956 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C8%2C4%2C3%3BMQ%3D49%3BFQ%3D36%3BPV4%3D0.13%2C0.077%2C0.053%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42760 SAMTools SNP 96380 96380 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 96629 96629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 104244 104244 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C10%2C40%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.024%2C0.025%2C0.054%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 104264 104264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C1%2C51%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.36%2C0.23%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 104497 104497 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C83%2C3%2C47%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.15%2C0.052%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 106919 106919 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C14%2C22%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.13%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42760 SAMTools SNP 108421 108421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C7%2C313%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 108487 108487 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C119%2C3%2C160%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 108881 108881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D671%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C221%2C39%2C327%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-07%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 109726 109726 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold42760 SAMTools SNP 110847 110847 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C158%2C2%2C157%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 110901 110901 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D221%2C35%2C67%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-06%2C1.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42760 SAMTools SNP 110928 110928 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D225%2C20%2C62%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42760 SAMTools SNP 115887 115887 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C90:93 scaffold42760 SAMTools SNP 115906 115906 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.098%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold42760 SAMTools SNP 117602 117602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 117662 117662 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C107:49 scaffold42760 SAMTools SNP 118117 118117 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C63%2C0:99 scaffold42760 SAMTools SNP 118131 118131 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.58%2C5.7e-06%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42760 SAMTools SNP 118198 118198 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42760 SAMTools SNP 118534 118534 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C221:78 scaffold42760 SAMTools SNP 120944 120944 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold42760 SAMTools SNP 121451 121451 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold42760 SAMTools SNP 121649 121649 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold42760 SAMTools SNP 121750 121750 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42760 SAMTools SNP 121762 121762 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C248:60 scaffold42760 SAMTools SNP 126298 126298 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold42760 SAMTools SNP 126391 126391 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold42760 SAMTools SNP 127903 127903 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.55%2C0.02%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42760 SAMTools SNP 133500 133500 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42760 SAMTools SNP 133518 133518 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 134262 134262 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42760 SAMTools SNP 152061 152061 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 152967 152967 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C36%2C0:69 scaffold42760 SAMTools SNP 167300 167300 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42760 SAMTools SNP 167918 167918 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42762 SAMTools SNP 36280 36280 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold42762 SAMTools SNP 60123 60123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42762 SAMTools SNP 82314 82314 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42762 SAMTools SNP 82338 82338 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42762 SAMTools SNP 115483 115483 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42762 SAMTools SNP 115486 115486 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42762 SAMTools SNP 127603 127603 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C129:47 scaffold42762 SAMTools SNP 130133 130133 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C9%3BMQ%3D48%3BFQ%3D38%3BPV4%3D0.011%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C169:68 scaffold42762 SAMTools SNP 130936 130936 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42762 SAMTools SNP 131077 131077 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C184:99 scaffold42762 SAMTools SNP 131089 131089 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold42762 SAMTools SNP 131726 131726 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold42762 SAMTools SNP 137384 137384 213 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold42762 SAMTools SNP 148226 148226 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42762 SAMTools SNP 148235 148235 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42762 SAMTools SNP 161684 161684 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42762 SAMTools SNP 161692 161692 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42762 SAMTools SNP 175732 175732 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42766 SAMTools SNP 13796 13796 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0238%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold42766 SAMTools SNP 15421 15421 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C26%2C10%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.21%2C1e-54%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42766 SAMTools SNP 15448 15448 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C7%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C169%2C0:99 scaffold42766 SAMTools SNP 15504 15504 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C69%2C0:99 scaffold42766 SAMTools SNP 15544 15544 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C5%2C21%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.56%2C1.7e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42766 SAMTools SNP 15704 15704 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C248:33 scaffold42766 SAMTools SNP 15754 15754 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C102%2C0:99 scaffold42766 SAMTools SNP 16000 16000 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C12%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00024%2C2.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold42766 SAMTools SNP 16045 16045 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C30%2C0:57 scaffold42766 SAMTools SNP 23565 23565 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C15%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C181:61 scaffold42766 SAMTools SNP 24679 24679 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.24%2C1.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42766 SAMTools SNP 24820 24820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D862%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C359%2C72%2C323%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 24934 24934 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C214:68 scaffold42766 SAMTools SNP 24992 24992 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1010%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C347%2C144%2C372%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 25231 25231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C93%2C1%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 26359 26359 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42766 SAMTools SNP 26737 26737 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C62%2C58%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 27037 27037 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C90%2C5%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C2e-100%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 27748 27748 51.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold42766 SAMTools SNP 37970 37970 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42766 SAMTools SNP 96302 96302 41.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold42766 SAMTools SNP 115693 115693 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42766 SAMTools SNP 115998 115998 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42766 SAMTools SNP 116006 116006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42766 SAMTools SNP 116805 116805 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C26%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold42766 SAMTools SNP 116842 116842 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C4%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42766 SAMTools SNP 116874 116874 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.014%2C9.4e-19%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C229:99 scaffold42766 SAMTools SNP 117379 117379 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 117420 117420 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold42766 SAMTools SNP 117429 117429 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42766 SAMTools SNP 118836 118836 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold42766 SAMTools SNP 118847 118847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42766 SAMTools SNP 118923 118923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42766 SAMTools SNP 119801 119801 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42766 SAMTools SNP 119867 119867 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42766 SAMTools SNP 119886 119886 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C25%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C8.2e-06%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold42766 SAMTools SNP 119909 119909 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42766 SAMTools SNP 121698 121698 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42766 SAMTools SNP 121926 121926 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold42766 SAMTools SNP 122031 122031 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold42766 SAMTools SNP 123145 123145 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold42766 SAMTools SNP 136927 136927 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42766 SAMTools SNP 137519 137519 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42766 SAMTools SNP 137766 137766 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42766 SAMTools SNP 137811 137811 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42766 SAMTools SNP 138430 138430 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42766 SAMTools SNP 139174 139174 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C254:99 scaffold42766 SAMTools SNP 139443 139443 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.11%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42766 SAMTools SNP 139471 139471 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.053%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42766 SAMTools SNP 140893 140893 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold42766 SAMTools SNP 140957 140957 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C225:57 scaffold42766 SAMTools SNP 141352 141352 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42766 SAMTools SNP 141760 141760 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold42766 SAMTools SNP 141810 141810 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold42766 SAMTools SNP 143694 143694 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42766 SAMTools SNP 144444 144444 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42766 SAMTools SNP 144462 144462 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42766 SAMTools SNP 145636 145636 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0025%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C77:56 scaffold42766 SAMTools SNP 146197 146197 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C19%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.1%2C4.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42766 SAMTools SNP 146401 146401 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C42%2C0:77 scaffold42766 SAMTools SNP 146995 146995 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold42766 SAMTools SNP 181116 181116 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C21%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold42766 SAMTools SNP 181140 181140 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C18%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold42766 SAMTools SNP 181272 181272 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C44%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C226%2C0:99 scaffold42766 SAMTools SNP 181755 181755 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D3%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C5.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C15:18 scaffold42766 SAMTools SNP 182820 182820 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C255%2C0:99 scaffold42770 SAMTools SNP 85776 85776 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42770 SAMTools SNP 94086 94086 16.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold42770 SAMTools SNP 96305 96305 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42770 SAMTools SNP 97630 97630 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold42770 SAMTools SNP 98392 98392 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42770 SAMTools SNP 105055 105055 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42770 SAMTools SNP 114486 114486 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42770 SAMTools SNP 114495 114495 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42770 SAMTools SNP 114780 114780 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42770 SAMTools SNP 115149 115149 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42770 SAMTools SNP 138772 138772 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42770 SAMTools SNP 138935 138935 87.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C15%2C0:27 scaffold42770 SAMTools SNP 164741 164741 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold42770 SAMTools SNP 164750 164750 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42770 SAMTools SNP 164969 164969 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.1e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C210:42 scaffold42770 SAMTools SNP 165017 165017 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.021%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C248:46 scaffold42770 SAMTools SNP 166717 166717 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42770 SAMTools SNP 166725 166725 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42770 SAMTools SNP 171615 171615 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C182:49 scaffold42770 SAMTools SNP 172310 172310 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C33%2C0:63 scaffold42770 SAMTools SNP 173297 173297 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C42%2C0:81 scaffold42770 SAMTools SNP 174277 174277 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold42770 SAMTools SNP 175879 175879 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.038%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42770 SAMTools SNP 175886 175886 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.12%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42770 SAMTools SNP 176279 176279 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.61%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold42770 SAMTools SNP 176867 176867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42770 SAMTools SNP 177081 177081 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42770 SAMTools SNP 177892 177892 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C0%2C35%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold42770 SAMTools SNP 178679 178679 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.31%2C2.7e-07%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42770 SAMTools SNP 178763 178763 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42770 SAMTools SNP 178997 178997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42770 SAMTools SNP 179033 179033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42770 SAMTools SNP 179258 179258 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.042%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42770 SAMTools SNP 179299 179299 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C24%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.41%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold42770 SAMTools SNP 180137 180137 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold42770 SAMTools SNP 180164 180164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42770 SAMTools SNP 180251 180251 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C223:99 scaffold42770 SAMTools SNP 182866 182866 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0058%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold42770 SAMTools SNP 183718 183718 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42770 SAMTools SNP 183721 183721 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42770 SAMTools SNP 183960 183960 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42770 SAMTools SNP 183972 183972 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.031%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold42770 SAMTools SNP 185565 185565 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42770 SAMTools SNP 185568 185568 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42770 SAMTools SNP 185604 185604 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold42770 SAMTools SNP 185872 185872 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C0.02%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42770 SAMTools SNP 185911 185911 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C9%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00057%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold42770 SAMTools SNP 186263 186263 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold42770 SAMTools SNP 186708 186708 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.0061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold42770 SAMTools SNP 186717 186717 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42770 SAMTools SNP 187835 187835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42770 SAMTools SNP 187871 187871 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold42776 SAMTools SNP 769 769 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0027%2C0.098%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C194:48 scaffold42776 SAMTools SNP 783 783 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C191:99 scaffold42776 SAMTools SNP 854 854 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.1%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42776 SAMTools SNP 1450 1450 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1.1e-98%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold42776 SAMTools SNP 1512 1512 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C40%2C6%2C48%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.19%2C2.8e-74%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold42776 SAMTools SNP 1724 1724 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42776 SAMTools SNP 2187 2187 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C75%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C226%2C0:99 scaffold42776 SAMTools SNP 3442 3442 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42776 SAMTools SNP 4770 4770 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 5723 5723 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C74:77 scaffold42776 SAMTools SNP 7419 7419 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42776 SAMTools SNP 18982 18982 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 18997 18997 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 19737 19737 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42776 SAMTools SNP 20937 20937 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42776 SAMTools SNP 21826 21826 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42776 SAMTools SNP 21834 21834 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42776 SAMTools SNP 22262 22262 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 22310 22310 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42776 SAMTools SNP 22977 22977 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42776 SAMTools SNP 23024 23024 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 23348 23348 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 29629 29629 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42776 SAMTools SNP 32008 32008 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.23%2C1%2C7.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold42776 SAMTools SNP 33518 33518 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.52%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42776 SAMTools SNP 33527 33527 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.52%2C1.3e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold42776 SAMTools SNP 33587 33587 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42776 SAMTools SNP 34098 34098 29 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0%2C57%2C10%2C54:44 scaffold42776 SAMTools SNP 34434 34434 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42776 SAMTools SNP 34453 34453 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold42776 SAMTools SNP 34740 34740 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42776 SAMTools SNP 35362 35362 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42776 SAMTools SNP 50660 50660 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42776 SAMTools SNP 50824 50824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold42776 SAMTools SNP 52930 52930 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42776 SAMTools SNP 53271 53271 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42776 SAMTools SNP 53565 53565 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C19%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.39%2C3e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C228:71 scaffold42776 SAMTools SNP 53764 53764 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.00011%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold42776 SAMTools SNP 54118 54118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 54933 54933 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 54980 54980 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42776 SAMTools SNP 58355 58355 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42776 SAMTools SNP 58380 58380 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold42776 SAMTools SNP 62739 62739 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.62%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42776 SAMTools SNP 63019 63019 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 63232 63232 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 63644 63644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42776 SAMTools SNP 63701 63701 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.1e-11%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42776 SAMTools SNP 63753 63753 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42776 SAMTools SNP 63855 63855 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42776 SAMTools SNP 65332 65332 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42776 SAMTools SNP 65532 65532 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42776 SAMTools SNP 67369 67369 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42776 SAMTools SNP 68650 68650 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42776 SAMTools SNP 73365 73365 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C134:41 scaffold42776 SAMTools SNP 74148 74148 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold42776 SAMTools SNP 74184 74184 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.56%2C0.011%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42776 SAMTools SNP 74301 74301 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 74325 74325 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C24%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold42776 SAMTools SNP 74978 74978 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold42776 SAMTools SNP 75158 75158 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C7%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.023%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold42776 SAMTools SNP 76873 76873 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C156:99 scaffold42776 SAMTools SNP 76898 76898 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42776 SAMTools SNP 90046 90046 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold42776 SAMTools SNP 90158 90158 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C34%2C12%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.00019%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold42776 SAMTools SNP 90204 90204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C5%2C55%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.5%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 91030 91030 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C73%2C32%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 94233 94233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C42%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42776 SAMTools SNP 94287 94287 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42776 SAMTools SNP 94987 94987 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C7.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C184:70 scaffold42776 SAMTools SNP 100669 100669 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 103652 103652 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 105404 105404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 105407 105407 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 109849 109849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C43%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42776 SAMTools SNP 110768 110768 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C64%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold42776 SAMTools SNP 111489 111489 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C64%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold42776 SAMTools SNP 112693 112693 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 112696 112696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C12%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.32%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 114152 114152 57.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold42776 SAMTools SNP 116776 116776 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.16%2C5.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42776 SAMTools SNP 120184 120184 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C67%2C0%2C53%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.021%2C0.36%2C1%2C1e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold42776 SAMTools SNP 120223 120223 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42776 SAMTools SNP 120262 120262 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold42776 SAMTools SNP 120268 120268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42776 SAMTools SNP 121690 121690 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold42776 SAMTools SNP 121788 121788 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold42776 SAMTools SNP 122212 122212 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42776 SAMTools SNP 123335 123335 96 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C7.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C215:99 scaffold42776 SAMTools SNP 127003 127003 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold42776 SAMTools SNP 127502 127502 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.00089%2C3.4e-08%2C1%2C6.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42776 SAMTools SNP 128417 128417 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.022%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42776 SAMTools SNP 134976 134976 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold42776 SAMTools SNP 143240 143240 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42776 SAMTools SNP 143268 143268 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C0.05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42776 SAMTools SNP 155267 155267 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42776 SAMTools SNP 155275 155275 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold42776 SAMTools SNP 156935 156935 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42776 SAMTools SNP 156950 156950 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C153:65 scaffold42776 SAMTools SNP 156981 156981 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0109%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold42776 SAMTools SNP 157130 157130 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C36%2C0:69 scaffold42776 SAMTools SNP 164702 164702 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42776 SAMTools SNP 175620 175620 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.028%2C0.00018%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C231:81 scaffold42776 SAMTools SNP 176312 176312 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C84%2C0:99 scaffold42776 SAMTools SNP 176439 176439 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C6%2C21%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.44%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold42784 SAMTools SNP 1032 1032 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42784 SAMTools SNP 1104 1104 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold42784 SAMTools SNP 2382 2382 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.28%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold42784 SAMTools SNP 2397 2397 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42784 SAMTools SNP 2430 2430 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42784 SAMTools SNP 2439 2439 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold42784 SAMTools SNP 2508 2508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42784 SAMTools SNP 3000 3000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42784 SAMTools SNP 4807 4807 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.37%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold42784 SAMTools SNP 4846 4846 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42784 SAMTools SNP 5011 5011 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C162:99 scaffold42784 SAMTools SNP 5041 5041 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42784 SAMTools SNP 5674 5674 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold42784 SAMTools SNP 5731 5731 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.49%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C252:36 scaffold42784 SAMTools SNP 7080 7080 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C123%2C0:99 scaffold42784 SAMTools SNP 13361 13361 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 19289 19289 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C19:22 scaffold42784 SAMTools SNP 21544 21544 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C20%2C26%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 24062 24062 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 30487 30487 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C13%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 30670 30670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42784 SAMTools SNP 38345 38345 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42784 SAMTools SNP 38708 38708 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42784 SAMTools SNP 38725 38725 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold42784 SAMTools SNP 39088 39088 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.18%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C218:99 scaffold42784 SAMTools SNP 39320 39320 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42784 SAMTools SNP 39509 39509 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C35:38 scaffold42784 SAMTools SNP 39680 39680 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C6.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C77:37 scaffold42784 SAMTools SNP 40040 40040 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7.4e-20%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42784 SAMTools SNP 40758 40758 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42784 SAMTools SNP 40934 40934 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold42784 SAMTools SNP 41583 41583 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 46774 46774 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold42784 SAMTools SNP 54292 54292 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42784 SAMTools SNP 54296 54296 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42784 SAMTools SNP 58849 58849 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42784 SAMTools SNP 58932 58932 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 58948 58948 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42784 SAMTools SNP 61653 61653 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D46%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42784 SAMTools SNP 61659 61659 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C22%2C0%3BMQ%3D45%3BFQ%3D186%3BPV4%3D1%2C0.062%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold42784 SAMTools SNP 72086 72086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C117%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42784 SAMTools SNP 72164 72164 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C35%3BMQ%3D49%3BFQ%3D168%3BPV4%3D1%2C9.4e-53%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold42784 SAMTools SNP 73154 73154 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold42784 SAMTools SNP 73190 73190 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold42784 SAMTools SNP 74683 74683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D41%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42784 SAMTools SNP 74950 74950 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold42784 SAMTools SNP 75654 75654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C232%2C13%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C2.1e-82%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 75669 75669 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C17%3BMQ%3D46%3BFQ%3D-61%3BPV4%3D1%2C0.35%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold42784 SAMTools SNP 75769 75769 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold42784 SAMTools SNP 77339 77339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C35%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold42784 SAMTools SNP 77352 77352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.11%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold42784 SAMTools SNP 78995 78995 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C166%2C2%2C209%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 80119 80119 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42784 SAMTools SNP 80184 80184 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C26%2C27%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-07%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 80812 80812 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C91%2C139%3BMQ%3D45%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42784 SAMTools SNP 80821 80821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C61%2C25%2C16%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 80842 80842 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C43%2C41%2C51%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.88%2C1.2e-11%2C0.00011%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 80899 80899 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C67%2C27%2C14%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 81658 81658 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D878%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D573%2C41%2C261%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00027%2C2.6e-07%2C0.015%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42784 SAMTools SNP 81663 81663 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D888%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D579%2C48%2C255%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-07%2C1.4e-29%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 81701 81701 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D805%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C534%2C0%2C211%3BMQ%3D50%3BFQ%3D104%3BPV4%3D5.1e-05%2C0.00014%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold42784 SAMTools SNP 81720 81720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D867%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C275%2C12%2C490%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 82207 82207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C115%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-19%2C0.38%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 82627 82627 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C6%2C190%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1.1e-05%2C0.085%2C1%2C5.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold42784 SAMTools SNP 83725 83725 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C254%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42784 SAMTools SNP 83747 83747 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C0%2C149%3BMQ%3D50%3BFQ%3D-199%3BPV4%3D1%2C0.076%2C1%2C5.1e-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C172%2C0:99 scaffold42784 SAMTools SNP 83751 83751 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C27%2C0:51 scaffold42784 SAMTools SNP 88036 88036 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 88432 88432 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42784 SAMTools SNP 88676 88676 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42784 SAMTools SNP 88689 88689 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold42784 SAMTools SNP 89141 89141 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold42784 SAMTools SNP 89776 89776 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42784 SAMTools SNP 90184 90184 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold42784 SAMTools SNP 90229 90229 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold42784 SAMTools SNP 90409 90409 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42784 SAMTools SNP 90440 90440 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42784 SAMTools SNP 90794 90794 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42784 SAMTools SNP 90801 90801 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C92:95 scaffold42784 SAMTools SNP 90849 90849 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.069%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C147:46 scaffold42784 SAMTools SNP 91225 91225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 91666 91666 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C45%2C0:87 scaffold42784 SAMTools SNP 91696 91696 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42784 SAMTools SNP 91705 91705 178 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold42784 SAMTools SNP 92033 92033 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C3%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.14%2C0.0012%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold42784 SAMTools SNP 92042 92042 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C4%2C16%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C7.2e-13%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold42784 SAMTools SNP 92499 92499 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42784 SAMTools SNP 92511 92511 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42784 SAMTools SNP 92646 92646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 96169 96169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42784 SAMTools SNP 96209 96209 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42784 SAMTools SNP 96430 96430 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42784 SAMTools SNP 96468 96468 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold42784 SAMTools SNP 96703 96703 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42784 SAMTools SNP 96723 96723 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42784 SAMTools SNP 96899 96899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 96929 96929 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42784 SAMTools SNP 97168 97168 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42784 SAMTools SNP 97274 97274 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C0.18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold42784 SAMTools SNP 97285 97285 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.52%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C206:99 scaffold42784 SAMTools SNP 97728 97728 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold42784 SAMTools SNP 97734 97734 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 97829 97829 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 98079 98079 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42784 SAMTools SNP 98095 98095 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42784 SAMTools SNP 98202 98202 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold42784 SAMTools SNP 98529 98529 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42784 SAMTools SNP 98570 98570 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42784 SAMTools SNP 98582 98582 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 98606 98606 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.082%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42784 SAMTools SNP 98744 98744 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42784 SAMTools SNP 99519 99519 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.02%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42784 SAMTools SNP 100728 100728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 106731 106731 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 107327 107327 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C35%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 107369 107369 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C7.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 107756 107756 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold42784 SAMTools SNP 107762 107762 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold42784 SAMTools SNP 107780 107780 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42784 SAMTools SNP 108324 108324 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42784 SAMTools SNP 108358 108358 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42784 SAMTools SNP 108524 108524 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.31%2C9.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C210:48 scaffold42784 SAMTools SNP 108538 108538 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.33%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C129:99 scaffold42784 SAMTools SNP 114063 114063 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42784 SAMTools SNP 120834 120834 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.013%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42784 SAMTools SNP 129146 129146 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C231:61 scaffold42784 SAMTools SNP 129568 129568 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42784 SAMTools SNP 129893 129893 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 134208 134208 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42784 SAMTools SNP 134228 134228 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 136001 136001 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 136993 136993 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 144457 144457 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C207:99 scaffold42784 SAMTools SNP 144493 144493 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold42784 SAMTools SNP 146578 146578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42784 SAMTools SNP 147403 147403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 149859 149859 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C224:47 scaffold42784 SAMTools SNP 157978 157978 33.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold42784 SAMTools SNP 158042 158042 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 158557 158557 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold42784 SAMTools SNP 160232 160232 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold42784 SAMTools SNP 160253 160253 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold42784 SAMTools SNP 160254 160254 173 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C209:99 scaffold42784 SAMTools SNP 160577 160577 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42784 SAMTools SNP 160603 160603 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42784 SAMTools SNP 160639 160639 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold42784 SAMTools SNP 160774 160774 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42784 SAMTools SNP 160846 160846 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42784 SAMTools SNP 161018 161018 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold42784 SAMTools SNP 161072 161072 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold42784 SAMTools SNP 161081 161081 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold42784 SAMTools SNP 162743 162743 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42784 SAMTools SNP 162756 162756 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42784 SAMTools SNP 163146 163146 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42784 SAMTools SNP 163168 163168 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42784 SAMTools SNP 163395 163395 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C201:99 scaffold42784 SAMTools SNP 163447 163447 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42784 SAMTools SNP 164565 164565 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold42784 SAMTools SNP 164583 164583 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.35%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold42784 SAMTools SNP 165175 165175 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42784 SAMTools SNP 165640 165640 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42784 SAMTools SNP 165666 165666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42784 SAMTools SNP 165731 165731 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C45%2C0:87 scaffold42784 SAMTools SNP 167623 167623 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C57%2C0:99 scaffold42784 SAMTools SNP 167629 167629 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C93%2C0:99 scaffold42784 SAMTools SNP 167751 167751 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.081%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C173:71 scaffold42784 SAMTools SNP 168244 168244 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42784 SAMTools SNP 168259 168259 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42784 SAMTools SNP 168730 168730 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.55%2C0.019%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42784 SAMTools SNP 171012 171012 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42784 SAMTools SNP 171206 171206 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold42784 SAMTools SNP 171711 171711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42784 SAMTools SNP 173082 173082 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.087%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold42784 SAMTools SNP 173112 173112 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.043%2C0.011%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C250:99 scaffold42784 SAMTools SNP 173496 173496 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42784 SAMTools SNP 174298 174298 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold42784 SAMTools SNP 174334 174334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42784 SAMTools SNP 174596 174596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42784 SAMTools SNP 175522 175522 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42784 SAMTools SNP 175748 175748 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42784 SAMTools SNP 179568 179568 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42784 SAMTools SNP 179577 179577 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42788 SAMTools SNP 4137 4137 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 4308 4308 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 4320 4320 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 30680 30680 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 30710 30710 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42788 SAMTools SNP 30890 30890 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42788 SAMTools SNP 30911 30911 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42788 SAMTools SNP 31827 31827 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold42788 SAMTools SNP 32211 32211 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 32270 32270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 32644 32644 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42788 SAMTools SNP 32817 32817 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.16%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42788 SAMTools SNP 33090 33090 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42788 SAMTools SNP 33350 33350 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C0%2C37%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold42788 SAMTools SNP 34349 34349 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold42788 SAMTools SNP 34959 34959 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C29%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.18%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold42788 SAMTools SNP 36713 36713 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.031%2C0.25%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42788 SAMTools SNP 36723 36723 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42788 SAMTools SNP 37804 37804 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 37845 37845 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42788 SAMTools SNP 38064 38064 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C20%2C28%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.019%2C2.9e-29%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold42788 SAMTools SNP 40837 40837 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C120%2C6%2C26%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold42788 SAMTools SNP 41075 41075 98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C101%2C6%2C13%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold42788 SAMTools SNP 41120 41120 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C28%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C16:19 scaffold42788 SAMTools SNP 41871 41871 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C37%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42788 SAMTools SNP 42095 42095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42788 SAMTools SNP 43703 43703 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold42788 SAMTools SNP 43731 43731 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold42788 SAMTools SNP 43772 43772 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C26:29 scaffold42788 SAMTools SNP 43783 43783 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-06%2C1%2C1%2C2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 43844 43844 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C15%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold42788 SAMTools SNP 44372 44372 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C8%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.12%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42788 SAMTools SNP 44751 44751 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C1%2C21%2C8%3BMQ%3D50%3BFQ%3D171%3BPV4%3D2.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C217:99 scaffold42788 SAMTools SNP 45199 45199 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C103%2C19%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 45970 45970 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.017%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42788 SAMTools SNP 46786 46786 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C2%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.015%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold42788 SAMTools SNP 48823 48823 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C1%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42788 SAMTools SNP 49102 49102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C146%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42788 SAMTools SNP 49252 49252 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C18%2C7%2C13%3BMQ%3D50%3BFQ%3D89%3BPV4%3D9e-07%2C1%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold42788 SAMTools SNP 72977 72977 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 100707 100707 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42788 SAMTools SNP 100767 100767 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42788 SAMTools SNP 105677 105677 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 107467 107467 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 113282 113282 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 113297 113297 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold42788 SAMTools SNP 113327 113327 7.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D0.2%2C0.008%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold42788 SAMTools SNP 113336 113336 7.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D0.2%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold42788 SAMTools SNP 114092 114092 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 114128 114128 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42788 SAMTools SNP 114288 114288 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 114514 114514 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42788 SAMTools SNP 114553 114553 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 114583 114583 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42788 SAMTools SNP 132043 132043 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold42788 SAMTools SNP 148956 148956 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42788 SAMTools SNP 149080 149080 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42788 SAMTools SNP 149083 149083 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42788 SAMTools SNP 149936 149936 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D40%3BFQ%3D48%3BPV4%3D1%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C107:78 scaffold42788 SAMTools SNP 149973 149973 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D40%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold42788 SAMTools SNP 150725 150725 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold42788 SAMTools SNP 150798 150798 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42788 SAMTools SNP 151281 151281 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 152241 152241 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C0%3BMQ%3D28%3BFQ%3D6.99%3BPV4%3D0.014%2C1%2C0.0094%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C95:33 scaffold42788 SAMTools SNP 152494 152494 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.23%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold42788 SAMTools SNP 152773 152773 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold42788 SAMTools SNP 152969 152969 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42788 SAMTools SNP 153049 153049 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42788 SAMTools SNP 153749 153749 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42788 SAMTools SNP 158696 158696 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42788 SAMTools SNP 158791 158791 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42788 SAMTools SNP 158803 158803 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42788 SAMTools SNP 158986 158986 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42788 SAMTools SNP 159041 159041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42788 SAMTools SNP 159213 159213 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42788 SAMTools SNP 159870 159870 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42788 SAMTools SNP 159872 159872 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 9028 9028 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42790 SAMTools SNP 25015 25015 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 25038 25038 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42790 SAMTools SNP 25112 25112 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 25142 25142 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 28469 28469 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold42790 SAMTools SNP 28542 28542 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42790 SAMTools SNP 28596 28596 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42790 SAMTools SNP 29203 29203 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42790 SAMTools SNP 29275 29275 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42790 SAMTools SNP 29293 29293 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42790 SAMTools SNP 31980 31980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42790 SAMTools SNP 31995 31995 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold42790 SAMTools SNP 36601 36601 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C33%2C0:63 scaffold42790 SAMTools SNP 38404 38404 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold42790 SAMTools SNP 41442 41442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C73%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42790 SAMTools SNP 42542 42542 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C3%2C47%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.55%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold42790 SAMTools SNP 42560 42560 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.32%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42790 SAMTools SNP 42578 42578 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C150%2C0%2C56%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.58%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42790 SAMTools SNP 43647 43647 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C135%2C0%2C50%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold42790 SAMTools SNP 43654 43654 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C226:47 scaffold42790 SAMTools SNP 48246 48246 90.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C12%2C0:21 scaffold42790 SAMTools SNP 49979 49979 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42790 SAMTools SNP 50614 50614 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42790 SAMTools SNP 50686 50686 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42790 SAMTools SNP 51161 51161 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42790 SAMTools SNP 52321 52321 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42790 SAMTools SNP 53170 53170 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42790 SAMTools SNP 53599 53599 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 54499 54499 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 55294 55294 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 58591 58591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 58885 58885 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 60337 60337 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42790 SAMTools SNP 60385 60385 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 61230 61230 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold42790 SAMTools SNP 61694 61694 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 63154 63154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 63163 63163 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 66480 66480 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42790 SAMTools SNP 66795 66795 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 69289 69289 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 69635 69635 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42790 SAMTools SNP 70354 70354 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold42790 SAMTools SNP 73304 73304 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 77219 77219 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42790 SAMTools SNP 77251 77251 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42790 SAMTools SNP 77252 77252 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42790 SAMTools SNP 78488 78488 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42790 SAMTools SNP 78509 78509 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 82080 82080 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 82306 82306 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 87818 87818 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42790 SAMTools SNP 89334 89334 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42790 SAMTools SNP 89358 89358 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42790 SAMTools SNP 90009 90009 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42790 SAMTools SNP 93681 93681 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42790 SAMTools SNP 94111 94111 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42790 SAMTools SNP 94155 94155 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42790 SAMTools SNP 94793 94793 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.095%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42790 SAMTools SNP 96282 96282 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42790 SAMTools SNP 96351 96351 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42790 SAMTools SNP 97061 97061 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42794 SAMTools SNP 8246 8246 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42794 SAMTools SNP 13088 13088 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42794 SAMTools SNP 13419 13419 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42794 SAMTools SNP 32182 32182 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42794 SAMTools SNP 33427 33427 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold42794 SAMTools SNP 33638 33638 57 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold42794 SAMTools SNP 33722 33722 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 34302 34302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold42794 SAMTools SNP 34449 34449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42794 SAMTools SNP 35501 35501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42794 SAMTools SNP 36122 36122 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold42794 SAMTools SNP 37282 37282 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42794 SAMTools SNP 40427 40427 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42794 SAMTools SNP 47348 47348 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42794 SAMTools SNP 47367 47367 198 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold42794 SAMTools SNP 48351 48351 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.51%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C161:51 scaffold42794 SAMTools SNP 48652 48652 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.049%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold42794 SAMTools SNP 49314 49314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42794 SAMTools SNP 49872 49872 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.033%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold42794 SAMTools SNP 49879 49879 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold42794 SAMTools SNP 51269 51269 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42794 SAMTools SNP 51658 51658 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C42:45 scaffold42794 SAMTools SNP 52009 52009 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.11%2C0.00022%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42794 SAMTools SNP 52287 52287 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.56%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42794 SAMTools SNP 52714 52714 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold42794 SAMTools SNP 56879 56879 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42794 SAMTools SNP 56911 56911 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42794 SAMTools SNP 60251 60251 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42794 SAMTools SNP 65483 65483 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.35%2C7.9e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42794 SAMTools SNP 65774 65774 115 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C87%2C0%2C141%2C54%2C135:99 scaffold42794 SAMTools SNP 67602 67602 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.16%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold42794 SAMTools SNP 67603 67603 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.16%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold42794 SAMTools SNP 68802 68802 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C15%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.32%2C0.068%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C197:99 scaffold42794 SAMTools SNP 68853 68853 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42794 SAMTools SNP 68857 68857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold42794 SAMTools SNP 68859 68859 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42794 SAMTools SNP 69492 69492 50.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold42794 SAMTools SNP 70166 70166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42794 SAMTools SNP 71409 71409 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42794 SAMTools SNP 71515 71515 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.23%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold42794 SAMTools SNP 104092 104092 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C203:31 scaffold42794 SAMTools SNP 104098 104098 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.3%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C95:98 scaffold42794 SAMTools SNP 112892 112892 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42794 SAMTools SNP 113013 113013 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42794 SAMTools SNP 125651 125651 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42794 SAMTools SNP 127406 127406 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold42794 SAMTools SNP 138142 138142 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C136%2C22%2C149%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 138170 138170 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C105%2C21%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 138229 138229 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C29%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42794 SAMTools SNP 138241 138241 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C27%2C26%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 139500 139500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42794 SAMTools SNP 140127 140127 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C52%2C28%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 140294 140294 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C101%2C19%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 140360 140360 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C35%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 141149 141149 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold42794 SAMTools SNP 141183 141183 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.038%2C4e-27%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42794 SAMTools SNP 141899 141899 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold42794 SAMTools SNP 148926 148926 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C213:99 scaffold42794 SAMTools SNP 148928 148928 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C224:85 scaffold42794 SAMTools SNP 149283 149283 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C221:99 scaffold42794 SAMTools SNP 149547 149547 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold42794 SAMTools SNP 149563 149563 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold42794 SAMTools SNP 150370 150370 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42794 SAMTools SNP 150453 150453 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42794 SAMTools SNP 155051 155051 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.16%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42794 SAMTools SNP 155713 155713 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.25%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42794 SAMTools SNP 155778 155778 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42794 SAMTools SNP 155818 155818 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42794 SAMTools SNP 156175 156175 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42794 SAMTools SNP 157873 157873 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42794 SAMTools SNP 158412 158412 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold42794 SAMTools SNP 159117 159117 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42794 SAMTools SNP 160025 160025 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold42794 SAMTools SNP 160958 160958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42794 SAMTools SNP 161524 161524 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42794 SAMTools SNP 171700 171700 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C40%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.49%2C6.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold42794 SAMTools SNP 173041 173041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C25%2C93%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 173260 173260 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C171%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42794 SAMTools SNP 174551 174551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C240%2C13%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 174751 174751 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C29%2C2%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C0.16%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42794 SAMTools SNP 174792 174792 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42794 SAMTools SNP 174850 174850 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C29%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42794 SAMTools SNP 176815 176815 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C149%2C19%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42794 SAMTools SNP 176823 176823 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C20%2C69%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00024%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold42794 SAMTools SNP 176851 176851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C3%2C111%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42794 SAMTools SNP 178274 178274 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C19%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C17%2C0:31 scaffold42804 SAMTools SNP 52246 52246 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42804 SAMTools SNP 52295 52295 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42804 SAMTools SNP 76556 76556 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C80:49 scaffold42804 SAMTools SNP 164835 164835 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42804 SAMTools SNP 164960 164960 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold42804 SAMTools SNP 164978 164978 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42804 SAMTools SNP 165474 165474 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42804 SAMTools SNP 165513 165513 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42804 SAMTools SNP 165530 165530 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42804 SAMTools SNP 165791 165791 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold42804 SAMTools SNP 166220 166220 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42804 SAMTools SNP 166280 166280 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42804 SAMTools SNP 166626 166626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42804 SAMTools SNP 167882 167882 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42804 SAMTools SNP 167980 167980 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42836 SAMTools SNP 2000 2000 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42836 SAMTools SNP 10544 10544 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C99%2C0:99 scaffold42836 SAMTools SNP 10716 10716 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold42836 SAMTools SNP 10860 10860 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.21%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C170:99 scaffold42836 SAMTools SNP 13152 13152 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42836 SAMTools SNP 13170 13170 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 13317 13317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C12%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42836 SAMTools SNP 13540 13540 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.61%2C0.052%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold42836 SAMTools SNP 13555 13555 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C5%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0035%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42836 SAMTools SNP 13573 13573 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.034%2C0.019%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold42836 SAMTools SNP 13738 13738 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C3%2C13%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.7%2C1.5e-24%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42836 SAMTools SNP 13741 13741 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.13%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42836 SAMTools SNP 15184 15184 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C43%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold42836 SAMTools SNP 34445 34445 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D47%3BFQ%3D32%3BPV4%3D0.23%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42836 SAMTools SNP 35489 35489 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold42836 SAMTools SNP 47242 47242 6.34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D0.2%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C8%2C0:9 scaffold42836 SAMTools SNP 47339 47339 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold42836 SAMTools SNP 47766 47766 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42836 SAMTools SNP 47821 47821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold42836 SAMTools SNP 48541 48541 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D46%3BFQ%3D78.3%3BPV4%3D1%2C0.42%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C107:99 scaffold42836 SAMTools SNP 49943 49943 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold42836 SAMTools SNP 49963 49963 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C77:80 scaffold42836 SAMTools SNP 52877 52877 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42836 SAMTools SNP 53356 53356 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold42836 SAMTools SNP 53367 53367 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold42836 SAMTools SNP 53382 53382 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold42836 SAMTools SNP 53500 53500 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.048%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold42836 SAMTools SNP 53566 53566 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold42836 SAMTools SNP 53783 53783 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42836 SAMTools SNP 63087 63087 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42836 SAMTools SNP 63120 63120 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold42836 SAMTools SNP 63806 63806 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42836 SAMTools SNP 63830 63830 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42836 SAMTools SNP 65788 65788 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42836 SAMTools SNP 65989 65989 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42836 SAMTools SNP 66171 66171 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42836 SAMTools SNP 84157 84157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42836 SAMTools SNP 86759 86759 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C152:99 scaffold42836 SAMTools SNP 102938 102938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C31%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 103064 103064 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C52%2C105%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.4e-07%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 103721 103721 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C111%2C36%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.00012%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 103743 103743 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C92%2C26%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 104536 104536 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C55%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold42836 SAMTools SNP 104711 104711 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C27%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C253:99 scaffold42836 SAMTools SNP 104968 104968 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42836 SAMTools SNP 106134 106134 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C28%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold42836 SAMTools SNP 107507 107507 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C46%2C29%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 108278 108278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C103%2C28%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C0.48%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 108714 108714 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C53%2C15%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D3.8e-07%2C1.4e-10%2C1%2C4.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42836 SAMTools SNP 110554 110554 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C41%2C51%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 111586 111586 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C4%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 111951 111951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C9%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 111984 111984 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C12%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold42836 SAMTools SNP 112959 112959 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42836 SAMTools SNP 112971 112971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42836 SAMTools SNP 113437 113437 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold42836 SAMTools SNP 113611 113611 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 115025 115025 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.1%2C0.00065%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42836 SAMTools SNP 115034 115034 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.23%2C0.0021%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold42836 SAMTools SNP 115094 115094 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42836 SAMTools SNP 115813 115813 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C83%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 115814 115814 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C94%2C4%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 116442 116442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C61%2C29%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 116485 116485 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.042%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 116854 116854 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 117722 117722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C46%2C6%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 118182 118182 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 118523 118523 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 119328 119328 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C206%2C106%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-17%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 119424 119424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C111%2C219%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 120099 120099 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C158%2C29%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00069%2C1%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 120846 120846 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D781%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C339%2C81%2C238%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1.5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 120890 120890 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D778%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D200%2C216%2C168%2C194%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 132279 132279 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42836 SAMTools SNP 134211 134211 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42836 SAMTools SNP 134258 134258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C34%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold42836 SAMTools SNP 134262 134262 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C5%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.015%2C0.018%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42836 SAMTools SNP 134573 134573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C10%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.7%2C0.3%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold42836 SAMTools SNP 134637 134637 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 135550 135550 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42836 SAMTools SNP 135574 135574 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.53%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold42836 SAMTools SNP 136366 136366 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold42836 SAMTools SNP 136863 136863 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C0.42%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42836 SAMTools SNP 136920 136920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 137619 137619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.094%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 138541 138541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C12%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.52%2C0.48%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold42836 SAMTools SNP 138592 138592 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C42%2C0:81 scaffold42836 SAMTools SNP 138747 138747 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42836 SAMTools SNP 139359 139359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42836 SAMTools SNP 139374 139374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42836 SAMTools SNP 139965 139965 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold42836 SAMTools SNP 140010 140010 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42836 SAMTools SNP 143657 143657 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D372%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C52%2C92%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 143675 143675 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C214%2C95%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 147618 147618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 147654 147654 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C59%2C7%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-06%2C3.1e-10%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 149418 149418 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.57%2C0.2%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold42836 SAMTools SNP 150382 150382 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.082%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42836 SAMTools SNP 150465 150465 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42836 SAMTools SNP 151002 151002 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42836 SAMTools SNP 151014 151014 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C15%2C0:27 scaffold42836 SAMTools SNP 151922 151922 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42836 SAMTools SNP 153301 153301 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 153691 153691 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C42%2C32%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 153733 153733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C66%2C10%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 154187 154187 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C36%3BMQ%3D50%3BFQ%3D-172%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold42836 SAMTools SNP 154574 154574 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 155600 155600 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C19%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D9.4e-07%2C3.7e-15%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold42836 SAMTools SNP 155648 155648 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 155664 155664 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C54%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold42836 SAMTools SNP 155910 155910 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C51%2C7%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.00025%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold42836 SAMTools SNP 155928 155928 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C13%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0021%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold42836 SAMTools SNP 156096 156096 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C31%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 156667 156667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42836 SAMTools SNP 156685 156685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42836 SAMTools SNP 156751 156751 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C16%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42836 SAMTools SNP 156757 156757 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.05%2C0.0047%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold42836 SAMTools SNP 156766 156766 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.017%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42836 SAMTools SNP 157333 157333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C28%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold42836 SAMTools SNP 157345 157345 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 161455 161455 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42836 SAMTools SNP 161464 161464 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42836 SAMTools SNP 161473 161473 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42836 SAMTools SNP 161478 161478 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold42836 SAMTools SNP 163182 163182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C18%2C25%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.47%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 166554 166554 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 169839 169839 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C15%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.047%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42836 SAMTools SNP 169857 169857 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42836 SAMTools SNP 169929 169929 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C25%2C46%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D8.8e-06%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold42836 SAMTools SNP 170362 170362 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C34%2C35%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D2.1e-05%2C1.4e-17%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold42836 SAMTools SNP 170992 170992 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42836 SAMTools SNP 172268 172268 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42836 SAMTools SNP 172274 172274 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42836 SAMTools SNP 174175 174175 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42836 SAMTools SNP 174232 174232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42836 SAMTools SNP 174679 174679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C6%2C112%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 176081 176081 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C11%2C126%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 176111 176111 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 176183 176183 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 176509 176509 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C228%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 177061 177061 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C8%2C81%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.018%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 177067 177067 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 177070 177070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C8%2C73%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 177199 177199 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C239%2C8%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0076%2C0.063%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 177384 177384 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C93%2C2%2C30%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.001%2C1%2C1%2C3.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42836 SAMTools SNP 177425 177425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C20%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C6.7e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 177434 177434 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42836 SAMTools SNP 177865 177865 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold42836 SAMTools SNP 183940 183940 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C13%2C99%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1.3e-24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42836 SAMTools SNP 187336 187336 222 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C239%2C10%2C235:99 scaffold42836 SAMTools SNP 187390 187390 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C202%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42836 SAMTools SNP 188612 188612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C1%2C76%3BMQ%3D49%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold42836 SAMTools SNP 188645 188645 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42836 SAMTools SNP 191966 191966 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D45%3BFQ%3D42%3BPV4%3D0.4%2C0.049%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C88:72 scaffold42840 SAMTools SNP 1203 1203 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42840 SAMTools SNP 5735 5735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 5754 5754 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 6945 6945 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92.3%3BPV4%3D1%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C124:99 scaffold42840 SAMTools SNP 7139 7139 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42840 SAMTools SNP 7688 7688 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold42840 SAMTools SNP 7856 7856 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.028%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42840 SAMTools SNP 7991 7991 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.003%2C2e-10%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C248:61 scaffold42840 SAMTools SNP 10838 10838 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold42840 SAMTools SNP 11804 11804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42840 SAMTools SNP 12258 12258 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42840 SAMTools SNP 29212 29212 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42840 SAMTools SNP 31082 31082 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42840 SAMTools SNP 45378 45378 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42840 SAMTools SNP 47866 47866 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold42840 SAMTools SNP 50393 50393 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42840 SAMTools SNP 50411 50411 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42840 SAMTools SNP 51999 51999 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold42840 SAMTools SNP 57567 57567 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold42840 SAMTools SNP 57663 57663 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42840 SAMTools SNP 57665 57665 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42840 SAMTools SNP 58382 58382 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42840 SAMTools SNP 67017 67017 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 67336 67336 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 93851 93851 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 93859 93859 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42840 SAMTools SNP 101219 101219 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42840 SAMTools SNP 101543 101543 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42840 SAMTools SNP 101621 101621 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 122003 122003 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold42840 SAMTools SNP 134580 134580 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D41%3BFQ%3D46%3BPV4%3D0.47%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C80:76 scaffold42840 SAMTools SNP 134712 134712 64.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C24%2C0%3BMQ%3D39%3BFQ%3D-44%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C17%2C0:31 scaffold42840 SAMTools SNP 134844 134844 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42840 SAMTools SNP 134871 134871 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold42840 SAMTools SNP 135183 135183 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42840 SAMTools SNP 135399 135399 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42840 SAMTools SNP 135420 135420 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold42840 SAMTools SNP 135681 135681 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C54%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C187%2C0:99 scaffold42840 SAMTools SNP 136168 136168 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C27%2C0:51 scaffold42840 SAMTools SNP 136362 136362 19.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold42840 SAMTools SNP 136657 136657 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold42840 SAMTools SNP 136692 136692 39.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold42840 SAMTools SNP 137026 137026 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C36%2C0:69 scaffold42840 SAMTools SNP 137060 137060 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C5.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C60:63 scaffold42840 SAMTools SNP 137704 137704 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.06%2C4.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C131:71 scaffold42840 SAMTools SNP 137761 137761 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.17%2C0.00014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C244:42 scaffold42840 SAMTools SNP 138057 138057 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold42840 SAMTools SNP 138115 138115 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42840 SAMTools SNP 138137 138137 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42840 SAMTools SNP 138150 138150 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42840 SAMTools SNP 141783 141783 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0015%2C4.2e-05%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C231:37 scaffold42840 SAMTools SNP 142028 142028 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C19%2C4%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.68%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42840 SAMTools SNP 142039 142039 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42840 SAMTools SNP 143867 143867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42840 SAMTools SNP 143873 143873 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.25%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold42840 SAMTools SNP 144437 144437 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C28%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C120%2C0:99 scaffold42840 SAMTools SNP 144551 144551 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C30%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C149:99 scaffold42840 SAMTools SNP 144561 144561 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C30%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C149:99 scaffold42840 SAMTools SNP 144580 144580 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.025%2C0.33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42840 SAMTools SNP 144703 144703 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42840 SAMTools SNP 144748 144748 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42840 SAMTools SNP 144885 144885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42840 SAMTools SNP 144924 144924 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C75:78 scaffold42840 SAMTools SNP 145985 145985 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.64%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42840 SAMTools SNP 146197 146197 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.018%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42840 SAMTools SNP 146514 146514 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C33%2C0:63 scaffold42840 SAMTools SNP 146968 146968 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.33%2C0.062%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C131:99 scaffold42840 SAMTools SNP 147481 147481 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C76:79 scaffold42840 SAMTools SNP 148861 148861 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C19%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.56%2C1.3e-20%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C236:99 scaffold42840 SAMTools SNP 149010 149010 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.47%2C2.2e-09%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold42840 SAMTools SNP 149337 149337 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.35%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C245:99 scaffold42840 SAMTools SNP 150710 150710 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 150883 150883 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 151114 151114 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.26%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold42840 SAMTools SNP 151467 151467 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold42840 SAMTools SNP 154391 154391 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42840 SAMTools SNP 156457 156457 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42840 SAMTools SNP 156476 156476 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42840 SAMTools SNP 165430 165430 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C160:54 scaffold42840 SAMTools SNP 165471 165471 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold42840 SAMTools SNP 165526 165526 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C27%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.074%2C1%2C1%2C3.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold42840 SAMTools SNP 166264 166264 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C3%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42840 SAMTools SNP 167055 167055 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42840 SAMTools SNP 167091 167091 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42840 SAMTools SNP 168144 168144 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42840 SAMTools SNP 168852 168852 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C2.2e-16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C25%2C0:47 scaffold42840 SAMTools SNP 169751 169751 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C6.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C140:66 scaffold42840 SAMTools SNP 169761 169761 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42840 SAMTools SNP 169803 169803 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C15%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.54%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold42840 SAMTools SNP 170521 170521 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold42840 SAMTools SNP 170600 170600 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold42840 SAMTools SNP 170603 170603 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold42840 SAMTools SNP 170615 170615 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold42840 SAMTools SNP 171896 171896 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold42840 SAMTools SNP 172212 172212 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42840 SAMTools SNP 172562 172562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42840 SAMTools SNP 172581 172581 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42840 SAMTools SNP 173300 173300 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42840 SAMTools SNP 173708 173708 89.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C5%2C0:9 scaffold42840 SAMTools SNP 173923 173923 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42840 SAMTools SNP 173975 173975 55.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold42840 SAMTools SNP 174115 174115 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4%3BPV4%3D0.43%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C29:32 scaffold42840 SAMTools SNP 174427 174427 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C149:85 scaffold42840 SAMTools SNP 176255 176255 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42840 SAMTools SNP 176480 176480 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42840 SAMTools SNP 177192 177192 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C5%3BMQ%3D49%3BFQ%3D6.98%3BPV4%3D0.11%2C3e-14%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C33:36 scaffold42840 SAMTools SNP 178662 178662 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold42840 SAMTools SNP 178802 178802 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42840 SAMTools SNP 179067 179067 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42840 SAMTools SNP 179084 179084 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42840 SAMTools SNP 179484 179484 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 179620 179620 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42840 SAMTools SNP 179667 179667 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 180322 180322 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42840 SAMTools SNP 180828 180828 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C144:30 scaffold42840 SAMTools SNP 180906 180906 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42840 SAMTools SNP 182047 182047 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42840 SAMTools SNP 182091 182091 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 182571 182571 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42840 SAMTools SNP 182609 182609 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42850 SAMTools SNP 11154 11154 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 12671 12671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2288%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C798%2C162%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C0.4%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 12710 12710 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3339%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C1654%2C90%2C1480%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.065%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold42850 SAMTools SNP 12815 12815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1086%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 15409 15409 20.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold42850 SAMTools SNP 15795 15795 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C11%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.77%2C9.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold42850 SAMTools SNP 17176 17176 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C45%2C0:87 scaffold42850 SAMTools SNP 20626 20626 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42850 SAMTools SNP 20644 20644 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.35%2C0.00013%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42850 SAMTools SNP 21483 21483 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C109%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 21742 21742 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C9%2C1%3BMQ%3D43%3BFQ%3D51%3BPV4%3D0.25%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold42850 SAMTools SNP 22215 22215 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C9%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.79%2C1%2C3.1e-06%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 24112 24112 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C37%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C0.00073%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 35580 35580 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C54:57 scaffold42850 SAMTools SNP 35584 35584 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold42850 SAMTools SNP 35634 35634 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.43%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold42850 SAMTools SNP 36042 36042 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.015%2C0.14%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C198:99 scaffold42850 SAMTools SNP 36047 36047 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C146:99 scaffold42850 SAMTools SNP 37078 37078 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C0.088%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42850 SAMTools SNP 37100 37100 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42850 SAMTools SNP 37529 37529 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42850 SAMTools SNP 39109 39109 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.15%2C0.21%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold42850 SAMTools SNP 44579 44579 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0072%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold42850 SAMTools SNP 44582 44582 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.036%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C252:99 scaffold42850 SAMTools SNP 44588 44588 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 48835 48835 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 49441 49441 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42850 SAMTools SNP 50549 50549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C410%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 53602 53602 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C10%2C67%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 53805 53805 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C50%2C53%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.33%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 53853 53853 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C35%2C88%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 57419 57419 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 57609 57609 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C150%2C47%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1.2e-14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold42850 SAMTools SNP 60312 60312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42850 SAMTools SNP 61331 61331 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C16%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.43%2C0.11%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold42850 SAMTools SNP 61522 61522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C13%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42850 SAMTools SNP 61774 61774 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.3%2C0.012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold42850 SAMTools SNP 61791 61791 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold42850 SAMTools SNP 61846 61846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold42850 SAMTools SNP 61991 61991 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold42850 SAMTools SNP 62201 62201 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42850 SAMTools SNP 62270 62270 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42850 SAMTools SNP 67811 67811 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42850 SAMTools SNP 69869 69869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 70294 70294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C3%2C14%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.033%2C0.49%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold42850 SAMTools SNP 70342 70342 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.039%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold42850 SAMTools SNP 73556 73556 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42850 SAMTools SNP 74133 74133 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C10%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.72%2C1.2e-23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42850 SAMTools SNP 75012 75012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C27%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold42850 SAMTools SNP 75051 75051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 76563 76563 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C33%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42850 SAMTools SNP 81267 81267 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C0:75 scaffold42850 SAMTools SNP 86154 86154 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold42850 SAMTools SNP 89050 89050 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42850 SAMTools SNP 89159 89159 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42850 SAMTools SNP 89179 89179 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.56%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C208:99 scaffold42850 SAMTools SNP 90270 90270 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold42850 SAMTools SNP 92564 92564 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42850 SAMTools SNP 93666 93666 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C204%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0049%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 93684 93684 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D270%2C1%2C133%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold42850 SAMTools SNP 99193 99193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.028%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 108331 108331 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 108581 108581 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C35%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 110058 110058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C332%2C4%2C207%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.1e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 110463 110463 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C84%2C2%2C41%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.34%2C9.2e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold42850 SAMTools SNP 112051 112051 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 113662 113662 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42850 SAMTools SNP 119812 119812 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 120804 120804 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42850 SAMTools SNP 120840 120840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 121333 121333 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.062%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 121767 121767 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.37%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 124182 124182 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C17%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold42850 SAMTools SNP 124391 124391 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42850 SAMTools SNP 124439 124439 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C12%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42850 SAMTools SNP 124478 124478 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 125570 125570 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42850 SAMTools SNP 125866 125866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42850 SAMTools SNP 126269 126269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 126904 126904 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 129479 129479 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 129669 129669 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 135342 135342 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42850 SAMTools SNP 142269 142269 34.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold42850 SAMTools SNP 150690 150690 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C13%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D6.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold42850 SAMTools SNP 152976 152976 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 153296 153296 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C3%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold42850 SAMTools SNP 153314 153314 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C1%2C7%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.49%2C1e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42850 SAMTools SNP 153610 153610 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C34%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 154039 154039 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C9%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.45%2C5.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42850 SAMTools SNP 154195 154195 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C25%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42850 SAMTools SNP 155059 155059 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42850 SAMTools SNP 156097 156097 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 157025 157025 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C8%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.4%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 157466 157466 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C0%2C10%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.33%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42850 SAMTools SNP 157471 157471 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42850 SAMTools SNP 161234 161234 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C10%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.51%2C1.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42850 SAMTools SNP 161383 161383 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold42850 SAMTools SNP 165414 165414 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D48%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.58%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold42850 SAMTools SNP 165677 165677 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.11%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 165938 165938 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.29%2C0.36%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold42850 SAMTools SNP 166167 166167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 168931 168931 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C41%2C23%2C8%3BMQ%3D35%3BFQ%3D121%3BPV4%3D0.01%2C0.018%2C0.015%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold42850 SAMTools SNP 170279 170279 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C38%2C12%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.21%2C0.026%2C0.3%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 171354 171354 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42850 SAMTools SNP 174346 174346 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42850 SAMTools SNP 177056 177056 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 177060 177060 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42850 SAMTools SNP 177340 177340 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold42850 SAMTools SNP 177709 177709 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D697%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D234%2C3%2C456%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.24%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 178877 178877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7988%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D829%2C2945%2C800%2C3146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 180502 180502 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42850 SAMTools SNP 180609 180609 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold42850 SAMTools SNP 180617 180617 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold42850 SAMTools SNP 182282 182282 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42850 SAMTools SNP 182496 182496 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42850 SAMTools SNP 182914 182914 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42850 SAMTools SNP 182967 182967 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 183590 183590 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C44%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42850 SAMTools SNP 183838 183838 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42850 SAMTools SNP 183842 183842 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold42850 SAMTools SNP 186728 186728 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42850 SAMTools SNP 186754 186754 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C2%2C16%2C9%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold42850 SAMTools SNP 186793 186793 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold42866 SAMTools SNP 3018 3018 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42866 SAMTools SNP 3052 3052 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42866 SAMTools SNP 3686 3686 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42866 SAMTools SNP 59026 59026 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 61854 61854 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42866 SAMTools SNP 61876 61876 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42866 SAMTools SNP 62164 62164 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold42866 SAMTools SNP 121841 121841 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 122280 122280 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42866 SAMTools SNP 123079 123079 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42866 SAMTools SNP 131421 131421 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold42866 SAMTools SNP 133255 133255 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C90:30 scaffold42866 SAMTools SNP 133308 133308 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42866 SAMTools SNP 133331 133331 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42866 SAMTools SNP 133664 133664 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold42866 SAMTools SNP 143576 143576 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42866 SAMTools SNP 143606 143606 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold42866 SAMTools SNP 144031 144031 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold42866 SAMTools SNP 144499 144499 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 144550 144550 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold42866 SAMTools SNP 150673 150673 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42866 SAMTools SNP 150676 150676 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42866 SAMTools SNP 150700 150700 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 150701 150701 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42866 SAMTools SNP 151171 151171 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 152700 152700 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42866 SAMTools SNP 153784 153784 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold42866 SAMTools SNP 153794 153794 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.3%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C102:99 scaffold42866 SAMTools SNP 154555 154555 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold42866 SAMTools SNP 154569 154569 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold42866 SAMTools SNP 154710 154710 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42866 SAMTools SNP 154779 154779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42866 SAMTools SNP 155295 155295 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold42866 SAMTools SNP 155674 155674 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C4%3BMQ%3D45%3BFQ%3D46%3BPV4%3D1%2C0.00028%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C174:76 scaffold42866 SAMTools SNP 155719 155719 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C0%3BMQ%3D48%3BFQ%3D37%3BPV4%3D0.034%2C4.6e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold42866 SAMTools SNP 156332 156332 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42880 SAMTools SNP 10931 10931 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42880 SAMTools SNP 13401 13401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42880 SAMTools SNP 16179 16179 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42880 SAMTools SNP 16181 16181 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42880 SAMTools SNP 21862 21862 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42880 SAMTools SNP 40034 40034 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42880 SAMTools SNP 41111 41111 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42880 SAMTools SNP 41586 41586 16.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold42880 SAMTools SNP 115228 115228 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C21:24 scaffold42880 SAMTools SNP 186681 186681 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold42880 SAMTools SNP 186890 186890 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C77:49 scaffold42880 SAMTools SNP 187683 187683 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold42890 SAMTools SNP 12605 12605 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42890 SAMTools SNP 12641 12641 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold42890 SAMTools SNP 17263 17263 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42890 SAMTools SNP 18144 18144 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold42890 SAMTools SNP 18281 18281 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42890 SAMTools SNP 24390 24390 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.44%2C1e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C156:64 scaffold42890 SAMTools SNP 30557 30557 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42890 SAMTools SNP 32444 32444 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold42890 SAMTools SNP 43215 43215 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold42890 SAMTools SNP 43338 43338 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00075%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42890 SAMTools SNP 89350 89350 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42890 SAMTools SNP 89541 89541 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 90797 90797 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 94221 94221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42890 SAMTools SNP 100629 100629 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42890 SAMTools SNP 100635 100635 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold42890 SAMTools SNP 100824 100824 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.55%2C0.042%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C253:89 scaffold42890 SAMTools SNP 100865 100865 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42890 SAMTools SNP 101532 101532 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0061%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42890 SAMTools SNP 101721 101721 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.42%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C194:99 scaffold42890 SAMTools SNP 103798 103798 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C249:99 scaffold42890 SAMTools SNP 103810 103810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold42890 SAMTools SNP 104045 104045 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C43%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold42890 SAMTools SNP 105834 105834 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C57%2C0:89 scaffold42890 SAMTools SNP 106013 106013 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold42890 SAMTools SNP 106539 106539 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C193:37 scaffold42890 SAMTools SNP 106547 106547 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.52%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C152:52 scaffold42890 SAMTools SNP 107504 107504 22.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold42890 SAMTools SNP 108431 108431 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold42890 SAMTools SNP 109345 109345 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42890 SAMTools SNP 109999 109999 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C99:99 scaffold42890 SAMTools SNP 110044 110044 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold42890 SAMTools SNP 110570 110570 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42890 SAMTools SNP 111098 111098 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42890 SAMTools SNP 111278 111278 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C234:63 scaffold42890 SAMTools SNP 112693 112693 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42890 SAMTools SNP 112709 112709 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.47%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42890 SAMTools SNP 113161 113161 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42890 SAMTools SNP 113164 113164 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42890 SAMTools SNP 114942 114942 52.8 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C72%2C66%2C86%2C0%2C80:10 scaffold42890 SAMTools SNP 115169 115169 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42890 SAMTools SNP 115633 115633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 115638 115638 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 116722 116722 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 116752 116752 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 120222 120222 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42890 SAMTools SNP 122278 122278 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42890 SAMTools SNP 122300 122300 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42890 SAMTools SNP 122358 122358 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold42890 SAMTools SNP 122389 122389 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 122405 122405 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42890 SAMTools SNP 122423 122423 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold42890 SAMTools SNP 122441 122441 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold42892 SAMTools SNP 3573 3573 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3636 3636 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42892 SAMTools SNP 3669 3669 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3768 3768 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3769 3769 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3920 3920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3933 3933 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 3976 3976 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C39%2C0:75 scaffold42892 SAMTools SNP 4192 4192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42892 SAMTools SNP 4420 4420 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold42892 SAMTools SNP 4460 4460 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42892 SAMTools SNP 4868 4868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold42892 SAMTools SNP 6101 6101 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 6108 6108 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 9216 9216 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold42892 SAMTools SNP 9228 9228 82 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0%2C105%2C5%2C102:45 scaffold42892 SAMTools SNP 10056 10056 15.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold42892 SAMTools SNP 26401 26401 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42892 SAMTools SNP 43599 43599 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42892 SAMTools SNP 55547 55547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42892 SAMTools SNP 55568 55568 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42892 SAMTools SNP 57073 57073 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.11%2C1%2C2.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C54:57 scaffold42892 SAMTools SNP 60342 60342 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42892 SAMTools SNP 61516 61516 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42892 SAMTools SNP 66486 66486 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1637%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C63%2C0:99 scaffold42892 SAMTools SNP 66663 66663 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D954%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C9.2e-06%2C1%2C3.8e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C255%2C0:99 scaffold42892 SAMTools SNP 67566 67566 97.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D886%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C0:3 scaffold42892 SAMTools SNP 67778 67778 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D989%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C48%2C0:93 scaffold42892 SAMTools SNP 67893 67893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D695%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C37%2C355%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42892 SAMTools SNP 67968 67968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C251%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42892 SAMTools SNP 69705 69705 31.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold42892 SAMTools SNP 70043 70043 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C144%2C0:99 scaffold42892 SAMTools SNP 70640 70640 6.19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D29%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C36%2C0:38 scaffold42892 SAMTools SNP 70720 70720 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42892 SAMTools SNP 85315 85315 58.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold42892 SAMTools SNP 85852 85852 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold42892 SAMTools SNP 86251 86251 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold42892 SAMTools SNP 86425 86425 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.19%2C0.0087%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C209:49 scaffold42892 SAMTools SNP 94380 94380 46.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold42892 SAMTools SNP 126409 126409 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42892 SAMTools SNP 126706 126706 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold42892 SAMTools SNP 127115 127115 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold42892 SAMTools SNP 127159 127159 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold42892 SAMTools SNP 127435 127435 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold42892 SAMTools SNP 127882 127882 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42892 SAMTools SNP 128812 128812 18.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold42892 SAMTools SNP 142260 142260 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 147694 147694 55.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold42892 SAMTools SNP 150798 150798 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42892 SAMTools SNP 153186 153186 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold42892 SAMTools SNP 155680 155680 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold42892 SAMTools SNP 156061 156061 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold42892 SAMTools SNP 156131 156131 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold42892 SAMTools SNP 156325 156325 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold42892 SAMTools SNP 161631 161631 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 162712 162712 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42892 SAMTools SNP 171686 171686 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C66%2C0:99 scaffold42892 SAMTools SNP 172784 172784 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42892 SAMTools SNP 172797 172797 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.3%2C0.00023%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42892 SAMTools SNP 172817 172817 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold42892 SAMTools SNP 177676 177676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42892 SAMTools SNP 177746 177746 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42892 SAMTools SNP 177803 177803 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C33%2C0:63 scaffold42892 SAMTools SNP 178150 178150 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C33%2C0:63 scaffold42892 SAMTools SNP 178468 178468 14.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold42892 SAMTools SNP 178789 178789 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42892 SAMTools SNP 179038 179038 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C30%2C0:57 scaffold42892 SAMTools SNP 179722 179722 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42892 SAMTools SNP 180130 180130 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C21%2C0:39 scaffold42892 SAMTools SNP 180368 180368 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold42892 SAMTools SNP 181740 181740 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold42892 SAMTools SNP 190150 190150 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42894 SAMTools SNP 13728 13728 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42894 SAMTools SNP 13826 13826 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42894 SAMTools SNP 14909 14909 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold42894 SAMTools SNP 14976 14976 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.14%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold42894 SAMTools SNP 16669 16669 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42894 SAMTools SNP 17795 17795 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42894 SAMTools SNP 19067 19067 78.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold42894 SAMTools SNP 25056 25056 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C37%2C39%2C23%3BMQ%3D36%3BFQ%3D217%3BPV4%3D0.00035%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42894 SAMTools SNP 25119 25119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C9%3BMQ%3D49%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold42894 SAMTools SNP 25369 25369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.0087%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 28436 28436 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold42894 SAMTools SNP 38541 38541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 38563 38563 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42894 SAMTools SNP 39734 39734 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C89%2C31%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 40250 40250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C46%2C27%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 40271 40271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C45%2C5%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.42%2C1%2C1%2C4.1e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold42894 SAMTools SNP 40279 40279 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C6%2C33%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.074%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold42894 SAMTools SNP 40280 40280 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C0%2C24%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42894 SAMTools SNP 41795 41795 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C33%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 41819 41819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42894 SAMTools SNP 42411 42411 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 42758 42758 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C26%2C16%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0002%2C4.6e-06%2C1%2C9.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold42894 SAMTools SNP 43074 43074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 43092 43092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42894 SAMTools SNP 43774 43774 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C7%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 43882 43882 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C46%2C6%2C51%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1.3e-21%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42894 SAMTools SNP 44221 44221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C311%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42894 SAMTools SNP 44259 44259 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.34%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42894 SAMTools SNP 44284 44284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42894 SAMTools SNP 44561 44561 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.0079%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 44566 44566 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 45042 45042 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42894 SAMTools SNP 47448 47448 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42894 SAMTools SNP 47457 47457 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42894 SAMTools SNP 56342 56342 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42894 SAMTools SNP 56836 56836 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42894 SAMTools SNP 57237 57237 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C3%3BMQ%3D21%3BFQ%3D-3.53%3BPV4%3D1%2C0.019%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C26:29 scaffold42894 SAMTools SNP 57672 57672 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42894 SAMTools SNP 58689 58689 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42894 SAMTools SNP 61656 61656 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42894 SAMTools SNP 61671 61671 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42894 SAMTools SNP 61920 61920 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42894 SAMTools SNP 62043 62043 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42894 SAMTools SNP 62299 62299 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42894 SAMTools SNP 62329 62329 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42894 SAMTools SNP 62903 62903 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C223:43 scaffold42894 SAMTools SNP 62906 62906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42894 SAMTools SNP 63294 63294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold42894 SAMTools SNP 63344 63344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42894 SAMTools SNP 63373 63373 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42894 SAMTools SNP 63929 63929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42894 SAMTools SNP 63983 63983 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold42894 SAMTools SNP 65062 65062 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold42894 SAMTools SNP 65720 65720 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C171:42 scaffold42894 SAMTools SNP 66129 66129 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.25%2C0.0098%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold42894 SAMTools SNP 66452 66452 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold42894 SAMTools SNP 66966 66966 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C189:99 scaffold42894 SAMTools SNP 66972 66972 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42894 SAMTools SNP 67350 67350 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42894 SAMTools SNP 68027 68027 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42894 SAMTools SNP 69443 69443 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C1.2e-10%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C17:20 scaffold42894 SAMTools SNP 70796 70796 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold42894 SAMTools SNP 70799 70799 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold42894 SAMTools SNP 72061 72061 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold42894 SAMTools SNP 72176 72176 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.00035%2C1%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold42894 SAMTools SNP 72196 72196 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 72561 72561 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.12%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 72591 72591 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold42894 SAMTools SNP 72609 72609 46.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold42894 SAMTools SNP 72687 72687 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42894 SAMTools SNP 76632 76632 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold42894 SAMTools SNP 77904 77904 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold42894 SAMTools SNP 77907 77907 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 77919 77919 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C22%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 78166 78166 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 79286 79286 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42894 SAMTools SNP 79319 79319 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C28%2C40%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D0.64%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold42894 SAMTools SNP 80350 80350 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42894 SAMTools SNP 83041 83041 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42894 SAMTools SNP 83191 83191 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C240:99 scaffold42894 SAMTools SNP 84063 84063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42894 SAMTools SNP 84101 84101 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C21%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold42894 SAMTools SNP 85000 85000 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C5%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold42894 SAMTools SNP 86234 86234 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C254:92 scaffold42894 SAMTools SNP 86621 86621 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.081%2C2.9e-06%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42894 SAMTools SNP 86668 86668 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42894 SAMTools SNP 86686 86686 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42894 SAMTools SNP 87500 87500 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C18%2C17%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.3%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold42894 SAMTools SNP 87521 87521 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42894 SAMTools SNP 87770 87770 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C84%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold42894 SAMTools SNP 87773 87773 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D81%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C246:30 scaffold42894 SAMTools SNP 87809 87809 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42894 SAMTools SNP 87869 87869 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C32%2C2%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold42894 SAMTools SNP 88384 88384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C48%2C20%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 88450 88450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 88799 88799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42894 SAMTools SNP 91839 91839 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42894 SAMTools SNP 91887 91887 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42894 SAMTools SNP 93383 93383 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 93386 93386 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42894 SAMTools SNP 95434 95434 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C8%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0001%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold42894 SAMTools SNP 95492 95492 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C96%2C0:99 scaffold42894 SAMTools SNP 95660 95660 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold42894 SAMTools SNP 111300 111300 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42894 SAMTools SNP 111328 111328 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42894 SAMTools SNP 111612 111612 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.001%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold42894 SAMTools SNP 177326 177326 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42894 SAMTools SNP 177344 177344 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42896 SAMTools SNP 2210 2210 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42896 SAMTools SNP 10296 10296 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42896 SAMTools SNP 10369 10369 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42896 SAMTools SNP 10412 10412 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42896 SAMTools SNP 69795 69795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42896 SAMTools SNP 70560 70560 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42896 SAMTools SNP 167639 167639 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42896 SAMTools SNP 178406 178406 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42904 SAMTools SNP 32799 32799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42904 SAMTools SNP 38112 38112 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold42904 SAMTools SNP 38304 38304 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 38388 38388 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42904 SAMTools SNP 38697 38697 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold42904 SAMTools SNP 42035 42035 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold42904 SAMTools SNP 42599 42599 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 48163 48163 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42904 SAMTools SNP 52657 52657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42904 SAMTools SNP 53346 53346 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42904 SAMTools SNP 53352 53352 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 53403 53403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 53894 53894 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42904 SAMTools SNP 54405 54405 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42904 SAMTools SNP 55155 55155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42904 SAMTools SNP 55563 55563 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42904 SAMTools SNP 55617 55617 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42904 SAMTools SNP 55809 55809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold42904 SAMTools SNP 56107 56107 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C28%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold42904 SAMTools SNP 56448 56448 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold42904 SAMTools SNP 59471 59471 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42904 SAMTools SNP 63398 63398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold42904 SAMTools SNP 67565 67565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42904 SAMTools SNP 67929 67929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42904 SAMTools SNP 69748 69748 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42904 SAMTools SNP 70334 70334 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42904 SAMTools SNP 70336 70336 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42904 SAMTools SNP 70359 70359 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42904 SAMTools SNP 70448 70448 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C14%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C246:99 scaffold42904 SAMTools SNP 70449 70449 52.8 . . REF=T;ALT=A,G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C46%2C40%2C83%2C0%2C80%2C83%2C0%2C39%2C80:10 scaffold42904 SAMTools SNP 72169 72169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6409%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C141%2C606%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.44%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42904 SAMTools SNP 73282 73282 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold42904 SAMTools SNP 76112 76112 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C14%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C239:99 scaffold42904 SAMTools SNP 76113 76113 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42904 SAMTools SNP 76791 76791 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C93%2C0:99 scaffold42904 SAMTools SNP 89369 89369 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42904 SAMTools SNP 89438 89438 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42904 SAMTools SNP 89673 89673 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42904 SAMTools SNP 90320 90320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42904 SAMTools SNP 90467 90467 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold42904 SAMTools SNP 90515 90515 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42904 SAMTools SNP 91273 91273 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C51%2C0:99 scaffold42904 SAMTools SNP 92006 92006 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C255%2C0:99 scaffold42904 SAMTools SNP 92267 92267 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C8%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C169%2C0:99 scaffold42904 SAMTools SNP 93096 93096 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C51%2C0:99 scaffold42904 SAMTools SNP 93232 93232 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C78%2C0:99 scaffold42904 SAMTools SNP 93429 93429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42904 SAMTools SNP 93596 93596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42904 SAMTools SNP 93917 93917 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C84%2C0:99 scaffold42904 SAMTools SNP 93993 93993 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42904 SAMTools SNP 94492 94492 73.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold42904 SAMTools SNP 94563 94563 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold42904 SAMTools SNP 94731 94731 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C75%2C0:99 scaffold42904 SAMTools SNP 95675 95675 7.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42904 SAMTools SNP 95953 95953 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 96126 96126 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42904 SAMTools SNP 96328 96328 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42904 SAMTools SNP 96919 96919 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.011%2C0.00056%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42904 SAMTools SNP 97211 97211 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42904 SAMTools SNP 97676 97676 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold42904 SAMTools SNP 97883 97883 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C33%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42904 SAMTools SNP 98381 98381 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42904 SAMTools SNP 105618 105618 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold42904 SAMTools SNP 106281 106281 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42904 SAMTools SNP 107339 107339 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42904 SAMTools SNP 107738 107738 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold42904 SAMTools SNP 109116 109116 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold42904 SAMTools SNP 110239 110239 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42904 SAMTools SNP 111017 111017 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C27%2C0:51 scaffold42904 SAMTools SNP 111041 111041 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42904 SAMTools SNP 112489 112489 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C21%2C0:39 scaffold42904 SAMTools SNP 112516 112516 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.029%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C144:41 scaffold42904 SAMTools SNP 112518 112518 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.03%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C212:34 scaffold42904 SAMTools SNP 113541 113541 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42904 SAMTools SNP 114331 114331 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42904 SAMTools SNP 114450 114450 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42904 SAMTools SNP 117018 117018 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42904 SAMTools SNP 117258 117258 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold42904 SAMTools SNP 117304 117304 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold42904 SAMTools SNP 121217 121217 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42904 SAMTools SNP 129254 129254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C17%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42904 SAMTools SNP 131188 131188 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42904 SAMTools SNP 131222 131222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold42904 SAMTools SNP 131281 131281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42904 SAMTools SNP 133420 133420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42904 SAMTools SNP 137558 137558 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42904 SAMTools SNP 137961 137961 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42904 SAMTools SNP 137973 137973 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42904 SAMTools SNP 138525 138525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42904 SAMTools SNP 138914 138914 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C8%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold42904 SAMTools SNP 138917 138917 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C36%2C7%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold42904 SAMTools SNP 138937 138937 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D9.1e-05%2C0.0014%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold42904 SAMTools SNP 138939 138939 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00018%2C0.009%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold42904 SAMTools SNP 139500 139500 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42904 SAMTools SNP 140624 140624 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C48%2C0:93 scaffold42904 SAMTools SNP 141681 141681 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold42904 SAMTools SNP 155804 155804 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.078%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42904 SAMTools SNP 161773 161773 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42904 SAMTools SNP 163835 163835 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42904 SAMTools SNP 164617 164617 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42904 SAMTools SNP 165512 165512 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42904 SAMTools SNP 166298 166298 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42904 SAMTools SNP 166319 166319 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 166334 166334 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 171932 171932 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold42904 SAMTools SNP 172392 172392 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42904 SAMTools SNP 172620 172620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42904 SAMTools SNP 174126 174126 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42904 SAMTools SNP 174862 174862 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42904 SAMTools SNP 175143 175143 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42904 SAMTools SNP 176713 176713 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42904 SAMTools SNP 178820 178820 22.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold42904 SAMTools SNP 178905 178905 94.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0:39 scaffold42904 SAMTools SNP 178950 178950 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold42904 SAMTools SNP 191232 191232 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42904 SAMTools SNP 192986 192986 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42904 SAMTools SNP 198876 198876 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42904 SAMTools SNP 198877 198877 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42918 SAMTools SNP 1345 1345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 1352 1352 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 1923 1923 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 1924 1924 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 12343 12343 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 12344 12344 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 14741 14741 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42918 SAMTools SNP 14752 14752 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42918 SAMTools SNP 25307 25307 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42918 SAMTools SNP 32124 32124 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 32127 32127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 54592 54592 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C20%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.63%2C3e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold42918 SAMTools SNP 56856 56856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42918 SAMTools SNP 59107 59107 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42918 SAMTools SNP 63277 63277 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.56%2C0.00029%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42918 SAMTools SNP 63704 63704 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C28%2C40%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42918 SAMTools SNP 63797 63797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C17%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C7.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42918 SAMTools SNP 63881 63881 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42918 SAMTools SNP 63893 63893 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42918 SAMTools SNP 64373 64373 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D50%2C33%2C14%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.002%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42918 SAMTools SNP 65854 65854 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C0%2C32%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.29%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold42918 SAMTools SNP 67154 67154 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42918 SAMTools SNP 67276 67276 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42918 SAMTools SNP 68039 68039 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42918 SAMTools SNP 68061 68061 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42918 SAMTools SNP 68657 68657 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold42918 SAMTools SNP 70369 70369 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold42918 SAMTools SNP 70895 70895 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.3%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C153:99 scaffold42918 SAMTools SNP 70979 70979 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42918 SAMTools SNP 73173 73173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold42918 SAMTools SNP 74978 74978 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.26%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold42918 SAMTools SNP 77260 77260 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold42918 SAMTools SNP 84230 84230 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42918 SAMTools SNP 127385 127385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42918 SAMTools SNP 147894 147894 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42918 SAMTools SNP 155151 155151 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold42918 SAMTools SNP 155789 155789 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 157463 157463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 157642 157642 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 161781 161781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 164236 164236 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold42918 SAMTools SNP 166273 166273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42918 SAMTools SNP 167249 167249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C1%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42918 SAMTools SNP 172014 172014 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42918 SAMTools SNP 201591 201591 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42918 SAMTools SNP 201601 201601 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42922 SAMTools SNP 3371 3371 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 3477 3477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 19361 19361 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 19400 19400 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 19916 19916 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 19928 19928 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42922 SAMTools SNP 21779 21779 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 24241 24241 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42922 SAMTools SNP 24257 24257 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 24855 24855 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold42922 SAMTools SNP 25535 25535 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42922 SAMTools SNP 25804 25804 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold42922 SAMTools SNP 26307 26307 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42922 SAMTools SNP 32355 32355 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold42922 SAMTools SNP 32379 32379 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C137:99 scaffold42922 SAMTools SNP 33867 33867 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold42922 SAMTools SNP 33896 33896 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.092%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42922 SAMTools SNP 33918 33918 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C5%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.66%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42922 SAMTools SNP 33945 33945 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 34906 34906 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 34958 34958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 34991 34991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold42922 SAMTools SNP 35204 35204 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold42922 SAMTools SNP 35207 35207 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold42922 SAMTools SNP 36444 36444 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C15%2C4%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.13%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold42922 SAMTools SNP 36453 36453 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.27%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42922 SAMTools SNP 36510 36510 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C12%2C14%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.4%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold42922 SAMTools SNP 37723 37723 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C6%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42922 SAMTools SNP 37741 37741 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C8%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.28%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42922 SAMTools SNP 38685 38685 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 38995 38995 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 40798 40798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42922 SAMTools SNP 40801 40801 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C36%2C0:69 scaffold42922 SAMTools SNP 40834 40834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 41938 41938 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42922 SAMTools SNP 41967 41967 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 43024 43024 53.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold42922 SAMTools SNP 44914 44914 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7091%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1445%2C3120%2C1088%2C1112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 45391 45391 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C4%2C34%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.05%2C8.2e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42922 SAMTools SNP 45464 45464 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C36%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C73%2C0:92 scaffold42922 SAMTools SNP 45984 45984 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42922 SAMTools SNP 46306 46306 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C27%2C0:51 scaffold42922 SAMTools SNP 48609 48609 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C13%2C20%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold42922 SAMTools SNP 48612 48612 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C9%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.017%2C0.025%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42922 SAMTools SNP 48648 48648 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C3%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold42922 SAMTools SNP 48949 48949 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.028%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C194:42 scaffold42922 SAMTools SNP 49301 49301 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 49304 49304 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 49815 49815 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 49817 49817 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold42922 SAMTools SNP 49873 49873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 50058 50058 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 50127 50127 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 50133 50133 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 50146 50146 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42922 SAMTools SNP 50640 50640 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42922 SAMTools SNP 50897 50897 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold42922 SAMTools SNP 50915 50915 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42922 SAMTools SNP 50942 50942 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.004%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42922 SAMTools SNP 51109 51109 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C236:99 scaffold42922 SAMTools SNP 51125 51125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42922 SAMTools SNP 51576 51576 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42922 SAMTools SNP 51594 51594 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42922 SAMTools SNP 51654 51654 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold42922 SAMTools SNP 52320 52320 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold42922 SAMTools SNP 53838 53838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42922 SAMTools SNP 53886 53886 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42922 SAMTools SNP 54061 54061 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.12%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C201:99 scaffold42922 SAMTools SNP 54233 54233 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold42922 SAMTools SNP 55170 55170 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold42922 SAMTools SNP 55279 55279 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.075%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C253:99 scaffold42922 SAMTools SNP 55288 55288 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42922 SAMTools SNP 55605 55605 67.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold42922 SAMTools SNP 56948 56948 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold42922 SAMTools SNP 57790 57790 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold42922 SAMTools SNP 57916 57916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold42922 SAMTools SNP 57934 57934 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 58045 58045 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.23%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold42922 SAMTools SNP 58683 58683 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42922 SAMTools SNP 58708 58708 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42922 SAMTools SNP 58902 58902 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42922 SAMTools SNP 58908 58908 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.007%2C2.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C182:87 scaffold42922 SAMTools SNP 89021 89021 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold42922 SAMTools SNP 89154 89154 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.026%2C0.0081%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42922 SAMTools SNP 115853 115853 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42922 SAMTools SNP 115920 115920 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C56:59 scaffold42922 SAMTools SNP 116593 116593 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold42922 SAMTools SNP 117598 117598 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.6e-40%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold42922 SAMTools SNP 118250 118250 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.59%2C2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42922 SAMTools SNP 118329 118329 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C9%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C8.1e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 118370 118370 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C60%2C14%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.18%2C2.5e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42922 SAMTools SNP 118437 118437 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C62%2C0%2C16%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.2%2C8.9e-06%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold42922 SAMTools SNP 118487 118487 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C53%2C2%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42922 SAMTools SNP 119364 119364 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.043%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C54:57 scaffold42922 SAMTools SNP 119732 119732 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C6.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold42922 SAMTools SNP 119899 119899 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 120341 120341 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C5%2C10%3BMQ%3D48%3BFQ%3D85%3BPV4%3D0.044%2C2.6e-29%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C225:99 scaffold42922 SAMTools SNP 121669 121669 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 121717 121717 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42922 SAMTools SNP 122176 122176 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.018%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C134:46 scaffold42922 SAMTools SNP 122178 122178 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold42922 SAMTools SNP 122181 122181 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold42922 SAMTools SNP 122184 122184 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 122214 122214 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42922 SAMTools SNP 122232 122232 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold42922 SAMTools SNP 122569 122569 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 122572 122572 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 122677 122677 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42922 SAMTools SNP 123131 123131 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.51%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold42922 SAMTools SNP 123192 123192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42922 SAMTools SNP 123198 123198 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C106:99 scaffold42922 SAMTools SNP 123252 123252 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42922 SAMTools SNP 123255 123255 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold42922 SAMTools SNP 123707 123707 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C12%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.24%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold42922 SAMTools SNP 123736 123736 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C10%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.22%2C0.044%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold42922 SAMTools SNP 123764 123764 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42922 SAMTools SNP 123779 123779 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.39%2C1%2C1.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42922 SAMTools SNP 124354 124354 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 124357 124357 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42922 SAMTools SNP 124773 124773 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 124776 124776 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 125113 125113 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42922 SAMTools SNP 125120 125120 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42922 SAMTools SNP 125126 125126 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C144:70 scaffold42922 SAMTools SNP 126476 126476 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.073%2C0.2%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold42922 SAMTools SNP 126497 126497 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C22%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.67%2C0.5%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold42922 SAMTools SNP 126553 126553 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold42922 SAMTools SNP 126831 126831 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C22%2C18%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C90:93 scaffold42922 SAMTools SNP 127373 127373 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold42922 SAMTools SNP 128299 128299 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold42922 SAMTools SNP 141021 141021 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C1%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 141058 141058 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C41%2C0%2C35%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.0012%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42922 SAMTools SNP 141702 141702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42922 SAMTools SNP 141707 141707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42922 SAMTools SNP 142467 142467 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C10%2C41%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.4%2C0.26%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 142494 142494 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C54%2C4%2C47%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.11%2C0.00036%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 143084 143084 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.00011%2C0.22%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold42922 SAMTools SNP 143111 143111 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D49%3BFQ%3D158%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C185:99 scaffold42922 SAMTools SNP 143114 143114 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D49%3BFQ%3D111%3BPV4%3D1%2C0.00071%2C0.082%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C228:99 scaffold42922 SAMTools SNP 143120 143120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42922 SAMTools SNP 143343 143343 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 143361 143361 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42922 SAMTools SNP 152436 152436 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 152451 152451 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42922 SAMTools SNP 155314 155314 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D49%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C231:99 scaffold42922 SAMTools SNP 158509 158509 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold42922 SAMTools SNP 159009 159009 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C126%2C7%2C130%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.12%2C2.5e-239%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold42922 SAMTools SNP 159047 159047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C5.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 159616 159616 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold42922 SAMTools SNP 159760 159760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C237%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42922 SAMTools SNP 160879 160879 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C1%3BMQ%3D43%3BFQ%3D124%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold42922 SAMTools SNP 163193 163193 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold42922 SAMTools SNP 163247 163247 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00073%2C0.023%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold42922 SAMTools SNP 163265 163265 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.011%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold42922 SAMTools SNP 163963 163963 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C24%2C21%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0029%2C9.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold42922 SAMTools SNP 164060 164060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42922 SAMTools SNP 164712 164712 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D777%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C298%2C37%2C284%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C1.9e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 164718 164718 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D732%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C319%2C0%2C169%3BMQ%3D50%3BFQ%3D152%3BPV4%3D8.6e-09%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42922 SAMTools SNP 165400 165400 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold42922 SAMTools SNP 165945 165945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-05%2C0.057%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 165957 165957 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C19%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42922 SAMTools SNP 169517 169517 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42922 SAMTools SNP 170055 170055 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42922 SAMTools SNP 171372 171372 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C25%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.16%2C2.6e-44%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold42922 SAMTools SNP 171499 171499 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C141%2C0:99 scaffold42922 SAMTools SNP 181171 181171 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D48%3BFQ%3D69%3BPV4%3D1%2C2.2e-09%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C96:99 scaffold42924 SAMTools SNP 6533 6533 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 6567 6567 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 6630 6630 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 6633 6633 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 23554 23554 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.42%3BPV4%3D1%2C0.0014%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C49:30 scaffold42924 SAMTools SNP 42244 42244 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 42518 42518 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42924 SAMTools SNP 42933 42933 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42924 SAMTools SNP 43084 43084 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold42924 SAMTools SNP 43107 43107 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold42924 SAMTools SNP 43585 43585 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold42924 SAMTools SNP 43587 43587 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold42924 SAMTools SNP 43624 43624 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42924 SAMTools SNP 44126 44126 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42924 SAMTools SNP 44184 44184 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 46817 46817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 46868 46868 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42924 SAMTools SNP 47172 47172 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 47393 47393 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42924 SAMTools SNP 47557 47557 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42924 SAMTools SNP 55299 55299 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold42924 SAMTools SNP 55310 55310 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D48%3BFQ%3D24%3BPV4%3D0.47%2C0.38%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42924 SAMTools SNP 57465 57465 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C66%2C0:99 scaffold42924 SAMTools SNP 57616 57616 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C15%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.41%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold42924 SAMTools SNP 57918 57918 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold42924 SAMTools SNP 58235 58235 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold42924 SAMTools SNP 58716 58716 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42924 SAMTools SNP 58719 58719 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42924 SAMTools SNP 58761 58761 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42924 SAMTools SNP 59251 59251 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0263%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold42924 SAMTools SNP 59303 59303 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42924 SAMTools SNP 59382 59382 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C23%2C6%3BMQ%3D50%3BFQ%3D52.5%3BPV4%3D0.052%2C2.3e-12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C82:82 scaffold42924 SAMTools SNP 60623 60623 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42924 SAMTools SNP 60646 60646 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42924 SAMTools SNP 60674 60674 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 60679 60679 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 63918 63918 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold42924 SAMTools SNP 64741 64741 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42924 SAMTools SNP 64752 64752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42924 SAMTools SNP 66861 66861 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C234:99 scaffold42924 SAMTools SNP 67857 67857 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42924 SAMTools SNP 68175 68175 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C9%2C9%2C0%3BMQ%3D47%3BFQ%3D53%3BPV4%3D0.59%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold42924 SAMTools SNP 68465 68465 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C57%3BMQ%3D48%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold42924 SAMTools SNP 68801 68801 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C39%2C6%3BMQ%3D42%3BFQ%3D-58%3BPV4%3D1%2C0.27%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold42924 SAMTools SNP 69220 69220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D39%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42924 SAMTools SNP 69225 69225 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-5.47%3BPV4%3D0.33%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold42924 SAMTools SNP 69327 69327 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D20%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C93%2C0:99 scaffold42924 SAMTools SNP 70046 70046 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42924 SAMTools SNP 70444 70444 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 84843 84843 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 88411 88411 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 88425 88425 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 89924 89924 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42924 SAMTools SNP 101622 101622 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 125834 125834 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 125873 125873 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 125913 125913 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 125931 125931 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 127269 127269 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42924 SAMTools SNP 127275 127275 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.026%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold42924 SAMTools SNP 128210 128210 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42924 SAMTools SNP 128415 128415 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42924 SAMTools SNP 129584 129584 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42924 SAMTools SNP 129620 129620 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42924 SAMTools SNP 129911 129911 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42924 SAMTools SNP 129932 129932 85 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold42924 SAMTools SNP 130588 130588 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 131165 131165 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42924 SAMTools SNP 131252 131252 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42924 SAMTools SNP 131279 131279 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold42924 SAMTools SNP 131724 131724 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 132131 132131 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42924 SAMTools SNP 134793 134793 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42924 SAMTools SNP 134801 134801 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42924 SAMTools SNP 134813 134813 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42924 SAMTools SNP 135301 135301 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42924 SAMTools SNP 135325 135325 84.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold42924 SAMTools SNP 135709 135709 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold42924 SAMTools SNP 135742 135742 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold42924 SAMTools SNP 135757 135757 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42924 SAMTools SNP 135760 135760 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold42924 SAMTools SNP 136214 136214 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42924 SAMTools SNP 136680 136680 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42924 SAMTools SNP 151589 151589 37.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C15:18 scaffold42924 SAMTools SNP 162681 162681 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42924 SAMTools SNP 162889 162889 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42930 SAMTools SNP 10973 10973 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42930 SAMTools SNP 12726 12726 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C3.5e-05%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C154:99 scaffold42930 SAMTools SNP 16144 16144 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42930 SAMTools SNP 17945 17945 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C5e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold42930 SAMTools SNP 18619 18619 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold42930 SAMTools SNP 31436 31436 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.31%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42930 SAMTools SNP 33487 33487 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42930 SAMTools SNP 34080 34080 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42930 SAMTools SNP 34116 34116 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42930 SAMTools SNP 36672 36672 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42930 SAMTools SNP 36723 36723 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.6%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42930 SAMTools SNP 36824 36824 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0033%2C0.00022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold42930 SAMTools SNP 43921 43921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42930 SAMTools SNP 45015 45015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42930 SAMTools SNP 92719 92719 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42930 SAMTools SNP 95881 95881 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42930 SAMTools SNP 96337 96337 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C127:72 scaffold42930 SAMTools SNP 97018 97018 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C2%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C214%2C0:99 scaffold42930 SAMTools SNP 97161 97161 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C34%2C4%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.23%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold42930 SAMTools SNP 97557 97557 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C12%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.49%2C9.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C205:85 scaffold42930 SAMTools SNP 97604 97604 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C139:28 scaffold42930 SAMTools SNP 99716 99716 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold42930 SAMTools SNP 102968 102968 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42930 SAMTools SNP 163021 163021 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42930 SAMTools SNP 199936 199936 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0051%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold42946 SAMTools SNP 176 176 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold42946 SAMTools SNP 457 457 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 1333 1333 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42946 SAMTools SNP 1614 1614 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 3433 3433 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 3721 3721 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 18186 18186 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 26075 26075 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42946 SAMTools SNP 26300 26300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 26311 26311 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold42946 SAMTools SNP 56496 56496 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 56937 56937 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 57175 57175 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold42946 SAMTools SNP 57222 57222 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42946 SAMTools SNP 57234 57234 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 57927 57927 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 57965 57965 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.055%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold42946 SAMTools SNP 58080 58080 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C1%2C11%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold42946 SAMTools SNP 58098 58098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 58134 58134 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C17%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.026%2C0.17%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold42946 SAMTools SNP 58182 58182 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C33%2C0:63 scaffold42946 SAMTools SNP 58212 58212 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42946 SAMTools SNP 58406 58406 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C238:99 scaffold42946 SAMTools SNP 58541 58541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42946 SAMTools SNP 58729 58729 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C230:99 scaffold42946 SAMTools SNP 58795 58795 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C113:88 scaffold42946 SAMTools SNP 59097 59097 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold42946 SAMTools SNP 59436 59436 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.093%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 59607 59607 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C144:87 scaffold42946 SAMTools SNP 59706 59706 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.13%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold42946 SAMTools SNP 60022 60022 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C141:57 scaffold42946 SAMTools SNP 60043 60043 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.43%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C140:84 scaffold42946 SAMTools SNP 60478 60478 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C250:99 scaffold42946 SAMTools SNP 60491 60491 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42946 SAMTools SNP 60544 60544 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42946 SAMTools SNP 60886 60886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 61045 61045 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold42946 SAMTools SNP 61060 61060 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C137:99 scaffold42946 SAMTools SNP 61856 61856 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42946 SAMTools SNP 61871 61871 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42946 SAMTools SNP 61874 61874 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42946 SAMTools SNP 62482 62482 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold42946 SAMTools SNP 63192 63192 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42946 SAMTools SNP 65625 65625 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42946 SAMTools SNP 67334 67334 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 67378 67378 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold42946 SAMTools SNP 69667 69667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42946 SAMTools SNP 69687 69687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42946 SAMTools SNP 69889 69889 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C28%2C22%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.081%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 70164 70164 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.49%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 71423 71423 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C38%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 71460 71460 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 71477 71477 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C37%2C4%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.74%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold42946 SAMTools SNP 71619 71619 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C1%2C5%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold42946 SAMTools SNP 72025 72025 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 72047 72047 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 72292 72292 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42946 SAMTools SNP 72961 72961 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C107%2C17%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 73298 73298 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold42946 SAMTools SNP 73375 73375 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C32%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold42946 SAMTools SNP 73774 73774 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C3%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold42946 SAMTools SNP 74074 74074 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.44%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42946 SAMTools SNP 74117 74117 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold42946 SAMTools SNP 74136 74136 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42946 SAMTools SNP 74679 74679 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42946 SAMTools SNP 74681 74681 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42946 SAMTools SNP 83781 83781 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42946 SAMTools SNP 83822 83822 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold42946 SAMTools SNP 84026 84026 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42946 SAMTools SNP 84592 84592 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold42946 SAMTools SNP 84593 84593 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0010%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold42946 SAMTools SNP 86265 86265 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 86279 86279 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 87837 87837 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold42946 SAMTools SNP 88103 88103 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42946 SAMTools SNP 88611 88611 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42946 SAMTools SNP 88634 88634 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42946 SAMTools SNP 88713 88713 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42946 SAMTools SNP 88839 88839 138 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C32%2C164%2C0%2C161:27 scaffold42946 SAMTools SNP 89090 89090 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C0.082%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold42946 SAMTools SNP 89098 89098 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C199:63 scaffold42946 SAMTools SNP 89225 89225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 105321 105321 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42946 SAMTools SNP 106755 106755 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold42946 SAMTools SNP 114813 114813 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold42946 SAMTools SNP 120948 120948 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 120978 120978 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42946 SAMTools SNP 121865 121865 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42946 SAMTools SNP 122736 122736 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold42946 SAMTools SNP 122748 122748 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42946 SAMTools SNP 122983 122983 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42946 SAMTools SNP 123637 123637 49.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold42946 SAMTools SNP 131451 131451 25.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold42946 SAMTools SNP 132198 132198 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold42946 SAMTools SNP 132741 132741 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold42946 SAMTools SNP 147265 147265 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42946 SAMTools SNP 147359 147359 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42946 SAMTools SNP 153260 153260 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold42946 SAMTools SNP 154065 154065 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold42946 SAMTools SNP 155432 155432 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0052%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold42946 SAMTools SNP 155462 155462 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42946 SAMTools SNP 155647 155647 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.46%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C182:86 scaffold42946 SAMTools SNP 162983 162983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42946 SAMTools SNP 163052 163052 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C116%2C40%2C140%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 163388 163388 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C70%2C20%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-05%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42946 SAMTools SNP 163565 163565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42946 SAMTools SNP 163924 163924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold42946 SAMTools SNP 164121 164121 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C60%2C4%2C27%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.0048%2C1%2C1%2C4e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold42946 SAMTools SNP 166149 166149 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42946 SAMTools SNP 166155 166155 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold42946 SAMTools SNP 166965 166965 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C100:51 scaffold42946 SAMTools SNP 169360 169360 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42946 SAMTools SNP 186796 186796 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 186822 186822 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 186873 186873 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42946 SAMTools SNP 186888 186888 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42946 SAMTools SNP 187123 187123 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D0.43%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C120:99 scaffold42946 SAMTools SNP 187188 187188 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold42946 SAMTools SNP 187402 187402 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold42946 SAMTools SNP 187966 187966 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42946 SAMTools SNP 194514 194514 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42946 SAMTools SNP 194519 194519 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42946 SAMTools SNP 194706 194706 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42946 SAMTools SNP 194816 194816 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.001%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C73:76 scaffold42946 SAMTools SNP 195139 195139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42946 SAMTools SNP 196623 196623 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42946 SAMTools SNP 202275 202275 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C0.34%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold42948 SAMTools SNP 3537 3537 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42948 SAMTools SNP 5308 5308 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold42948 SAMTools SNP 5543 5543 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42948 SAMTools SNP 14146 14146 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42948 SAMTools SNP 14894 14894 32.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold42948 SAMTools SNP 15008 15008 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C18%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0058%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42948 SAMTools SNP 15829 15829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42948 SAMTools SNP 15844 15844 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42948 SAMTools SNP 15859 15859 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42948 SAMTools SNP 15966 15966 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42948 SAMTools SNP 15973 15973 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C60%2C0:99 scaffold42948 SAMTools SNP 16039 16039 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42948 SAMTools SNP 16448 16448 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42948 SAMTools SNP 16628 16628 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold42948 SAMTools SNP 17991 17991 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42948 SAMTools SNP 18671 18671 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.63%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold42948 SAMTools SNP 18852 18852 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.1e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C74:55 scaffold42948 SAMTools SNP 19501 19501 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold42948 SAMTools SNP 19854 19854 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42948 SAMTools SNP 27504 27504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42948 SAMTools SNP 30666 30666 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold42948 SAMTools SNP 35482 35482 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold42948 SAMTools SNP 35741 35741 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42948 SAMTools SNP 35742 35742 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42948 SAMTools SNP 36669 36669 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0:45 scaffold42948 SAMTools SNP 36684 36684 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold42948 SAMTools SNP 37074 37074 45.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold42948 SAMTools SNP 37188 37188 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C18%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold42948 SAMTools SNP 37320 37320 82.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold42948 SAMTools SNP 37557 37557 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C75:30 scaffold42948 SAMTools SNP 43195 43195 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold42948 SAMTools SNP 43361 43361 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold42948 SAMTools SNP 44836 44836 95.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold42948 SAMTools SNP 44965 44965 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold42948 SAMTools SNP 45409 45409 96.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold42948 SAMTools SNP 46034 46034 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C3.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C23:26 scaffold42948 SAMTools SNP 50422 50422 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold42948 SAMTools SNP 64707 64707 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold42948 SAMTools SNP 65399 65399 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.059%2C0.049%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold42948 SAMTools SNP 65471 65471 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold42948 SAMTools SNP 66735 66735 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42948 SAMTools SNP 74832 74832 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42948 SAMTools SNP 75217 75217 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C1%2C24%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.39%2C3.3e-27%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold42948 SAMTools SNP 75319 75319 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold42948 SAMTools SNP 75379 75379 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42948 SAMTools SNP 75436 75436 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C5%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.25%2C8.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold42948 SAMTools SNP 75640 75640 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C81%2C0:99 scaffold42948 SAMTools SNP 76129 76129 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C69%2C0:99 scaffold42948 SAMTools SNP 76300 76300 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42948 SAMTools SNP 82037 82037 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42948 SAMTools SNP 83506 83506 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42948 SAMTools SNP 114985 114985 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42948 SAMTools SNP 114994 114994 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42948 SAMTools SNP 115250 115250 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42948 SAMTools SNP 142564 142564 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D26.9%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C71:57 scaffold42948 SAMTools SNP 142637 142637 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold42948 SAMTools SNP 142699 142699 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42948 SAMTools SNP 145329 145329 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42948 SAMTools SNP 145790 145790 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold42948 SAMTools SNP 161071 161071 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C254:34 scaffold42948 SAMTools SNP 173957 173957 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold42948 SAMTools SNP 173979 173979 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.024%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold42948 SAMTools SNP 174001 174001 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42948 SAMTools SNP 174017 174017 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C0.34%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold42948 SAMTools SNP 174505 174505 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold42948 SAMTools SNP 174548 174548 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42948 SAMTools SNP 186233 186233 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C15%2C19%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold42948 SAMTools SNP 189643 189643 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C11%2C17%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C0.25%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42948 SAMTools SNP 189865 189865 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C24%2C4%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.38%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold42948 SAMTools SNP 189933 189933 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.35%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold42960 SAMTools SNP 326 326 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 9442 9442 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 18135 18135 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 18188 18188 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 18672 18672 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 34372 34372 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42960 SAMTools SNP 34392 34392 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold42960 SAMTools SNP 34410 34410 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold42960 SAMTools SNP 34800 34800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 39225 39225 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42960 SAMTools SNP 39786 39786 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42960 SAMTools SNP 39794 39794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 39879 39879 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42960 SAMTools SNP 40492 40492 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42960 SAMTools SNP 40531 40531 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42960 SAMTools SNP 40929 40929 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold42960 SAMTools SNP 40954 40954 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42960 SAMTools SNP 42678 42678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42960 SAMTools SNP 43166 43166 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 43169 43169 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold42960 SAMTools SNP 43771 43771 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold42960 SAMTools SNP 44234 44234 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 44550 44550 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 44577 44577 64.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C6%2C0:10 scaffold42960 SAMTools SNP 44969 44969 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42960 SAMTools SNP 45029 45029 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold42960 SAMTools SNP 45525 45525 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.36%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold42960 SAMTools SNP 45604 45604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42960 SAMTools SNP 45613 45613 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold42960 SAMTools SNP 46183 46183 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold42960 SAMTools SNP 47870 47870 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold42960 SAMTools SNP 51284 51284 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold42960 SAMTools SNP 52192 52192 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold42960 SAMTools SNP 55572 55572 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 59881 59881 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold42960 SAMTools SNP 59926 59926 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C237:99 scaffold42960 SAMTools SNP 62455 62455 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 62470 62470 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 63188 63188 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 64427 64427 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold42960 SAMTools SNP 64439 64439 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.037%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42960 SAMTools SNP 64508 64508 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42960 SAMTools SNP 64759 64759 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 64780 64780 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 64789 64789 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42960 SAMTools SNP 65286 65286 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42960 SAMTools SNP 65322 65322 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C15%2C0:27 scaffold42960 SAMTools SNP 66442 66442 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42960 SAMTools SNP 66508 66508 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C141:99 scaffold42960 SAMTools SNP 134173 134173 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42960 SAMTools SNP 134445 134445 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42960 SAMTools SNP 145771 145771 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C198:70 scaffold42960 SAMTools SNP 145966 145966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42960 SAMTools SNP 149729 149729 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42960 SAMTools SNP 149735 149735 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42960 SAMTools SNP 150503 150503 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42960 SAMTools SNP 151470 151470 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42960 SAMTools SNP 152126 152126 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold42960 SAMTools SNP 152156 152156 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold42960 SAMTools SNP 152223 152223 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold42960 SAMTools SNP 152737 152737 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold42960 SAMTools SNP 153162 153162 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold42960 SAMTools SNP 153274 153274 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C176:72 scaffold42960 SAMTools SNP 154331 154331 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold42960 SAMTools SNP 154337 154337 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold42960 SAMTools SNP 154349 154349 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42960 SAMTools SNP 157834 157834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold42960 SAMTools SNP 157888 157888 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold42960 SAMTools SNP 166430 166430 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C48%2C0:93 scaffold42960 SAMTools SNP 178060 178060 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42960 SAMTools SNP 199783 199783 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42974 SAMTools SNP 4079 4079 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42974 SAMTools SNP 7630 7630 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C2%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42974 SAMTools SNP 8192 8192 88.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.41%2C1.5e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C1%2C0:4 scaffold42974 SAMTools SNP 8235 8235 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold42974 SAMTools SNP 8259 8259 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42974 SAMTools SNP 9831 9831 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42974 SAMTools SNP 16900 16900 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42974 SAMTools SNP 18096 18096 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold42974 SAMTools SNP 18140 18140 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C200:99 scaffold42974 SAMTools SNP 24220 24220 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42974 SAMTools SNP 29721 29721 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42974 SAMTools SNP 32438 32438 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42974 SAMTools SNP 38312 38312 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42974 SAMTools SNP 38329 38329 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42974 SAMTools SNP 39363 39363 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.079%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold42974 SAMTools SNP 39715 39715 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.062%2C0.001%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold42974 SAMTools SNP 39727 39727 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0099%2C9.5e-06%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold42974 SAMTools SNP 39728 39728 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D147%3BPV4%3D7.1e-06%2C0.001%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold42974 SAMTools SNP 40013 40013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42974 SAMTools SNP 40248 40248 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00042%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold42974 SAMTools SNP 40251 40251 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00042%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold42974 SAMTools SNP 40266 40266 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42974 SAMTools SNP 40844 40844 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42974 SAMTools SNP 40883 40883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C16%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold42974 SAMTools SNP 41442 41442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C16%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold42974 SAMTools SNP 41881 41881 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold42974 SAMTools SNP 42105 42105 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold42974 SAMTools SNP 42162 42162 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold42974 SAMTools SNP 42513 42513 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42974 SAMTools SNP 42862 42862 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42974 SAMTools SNP 42892 42892 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold42974 SAMTools SNP 42925 42925 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42974 SAMTools SNP 43147 43147 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42974 SAMTools SNP 44958 44958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C19%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42974 SAMTools SNP 45850 45850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42974 SAMTools SNP 47380 47380 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold42974 SAMTools SNP 47431 47431 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42974 SAMTools SNP 80271 80271 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C87%2C9%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 80672 80672 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 80868 80868 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C20%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 81424 81424 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42974 SAMTools SNP 81999 81999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold42974 SAMTools SNP 82020 82020 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 82722 82722 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C39%2C0:75 scaffold42974 SAMTools SNP 82745 82745 81 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C33%2C0%2C101%2C10%2C98:63 scaffold42974 SAMTools SNP 82886 82886 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C88%2C25%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.43%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 83106 83106 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C33%2C31%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C8e-36%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 84114 84114 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42974 SAMTools SNP 84295 84295 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C58%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C187%2C0:99 scaffold42974 SAMTools SNP 97300 97300 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.24%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C186:43 scaffold42974 SAMTools SNP 97838 97838 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C7.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 98109 98109 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C129%2C0:99 scaffold42974 SAMTools SNP 98217 98217 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold42974 SAMTools SNP 98237 98237 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C1%2C17%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.67%2C4.1e-26%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold42974 SAMTools SNP 98879 98879 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.064%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42974 SAMTools SNP 98882 98882 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.019%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42974 SAMTools SNP 98960 98960 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C7%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.67%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold42974 SAMTools SNP 99503 99503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42974 SAMTools SNP 99623 99623 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.024%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold42974 SAMTools SNP 104794 104794 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C63%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C250%2C0:99 scaffold42974 SAMTools SNP 105004 105004 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C55%2C7%2C56%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1.1e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold42974 SAMTools SNP 105703 105703 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.35%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42974 SAMTools SNP 106271 106271 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C162:99 scaffold42974 SAMTools SNP 106274 106274 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42974 SAMTools SNP 106937 106937 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold42974 SAMTools SNP 113363 113363 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold42974 SAMTools SNP 114350 114350 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42974 SAMTools SNP 115558 115558 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C9.8e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C134:37 scaffold42974 SAMTools SNP 118120 118120 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42974 SAMTools SNP 130000 130000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold42974 SAMTools SNP 130060 130060 49.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold42974 SAMTools SNP 130162 130162 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C64%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C229%2C0:99 scaffold42974 SAMTools SNP 130522 130522 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C22%2C7%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.44%2C4.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold42974 SAMTools SNP 130594 130594 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C18%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.53%2C3.5e-50%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold42974 SAMTools SNP 130873 130873 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C45%2C0:87 scaffold42974 SAMTools SNP 131178 131178 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42974 SAMTools SNP 131425 131425 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C18%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.004%2C4.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold42974 SAMTools SNP 131566 131566 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C10%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.023%2C2e-28%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42974 SAMTools SNP 131651 131651 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C18%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D4e-05%2C5.9e-15%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold42974 SAMTools SNP 132073 132073 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.21%2C4.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold42974 SAMTools SNP 132145 132145 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold42974 SAMTools SNP 132148 132148 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.43%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C184:33 scaffold42974 SAMTools SNP 132181 132181 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.56%2C1.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C213:40 scaffold42974 SAMTools SNP 132256 132256 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.19%2C3.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold42974 SAMTools SNP 132613 132613 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C51%2C0%2C43%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.25%2C9.6e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold42974 SAMTools SNP 132631 132631 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C2%2C36%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C7.8e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42974 SAMTools SNP 132682 132682 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C21%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.41%2C2.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold42974 SAMTools SNP 132769 132769 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.8e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C134:39 scaffold42974 SAMTools SNP 133826 133826 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.001%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold42974 SAMTools SNP 156095 156095 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold42974 SAMTools SNP 156203 156203 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.00053%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42974 SAMTools SNP 167305 167305 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold42974 SAMTools SNP 167894 167894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42974 SAMTools SNP 168615 168615 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold42974 SAMTools SNP 174252 174252 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C204:99 scaffold42974 SAMTools SNP 174282 174282 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.49%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42974 SAMTools SNP 177334 177334 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold42974 SAMTools SNP 178394 178394 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42974 SAMTools SNP 179356 179356 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42974 SAMTools SNP 179380 179380 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42974 SAMTools SNP 179395 179395 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold42974 SAMTools SNP 179429 179429 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.2%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C128:99 scaffold42974 SAMTools SNP 181369 181369 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.31%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42974 SAMTools SNP 181733 181733 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.023%2C0.14%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold42974 SAMTools SNP 182405 182405 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 183299 183299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 184713 184713 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold42974 SAMTools SNP 184841 184841 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C133:99 scaffold42974 SAMTools SNP 187240 187240 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold42974 SAMTools SNP 187318 187318 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C12%2C0:21 scaffold42974 SAMTools SNP 187336 187336 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.5%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold42974 SAMTools SNP 188967 188967 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold42974 SAMTools SNP 188970 188970 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C140:99 scaffold42974 SAMTools SNP 189090 189090 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C36%2C0:69 scaffold42974 SAMTools SNP 190337 190337 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold42974 SAMTools SNP 192721 192721 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold42974 SAMTools SNP 192744 192744 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C232:99 scaffold42974 SAMTools SNP 193480 193480 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.67%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold42974 SAMTools SNP 193495 193495 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold42974 SAMTools SNP 193557 193557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C4%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold42974 SAMTools SNP 193667 193667 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C48%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold42974 SAMTools SNP 194277 194277 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold42974 SAMTools SNP 194631 194631 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42974 SAMTools SNP 194660 194660 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42974 SAMTools SNP 197604 197604 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42974 SAMTools SNP 200212 200212 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C245:99 scaffold42974 SAMTools SNP 200249 200249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold42974 SAMTools SNP 200388 200388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C22%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold42974 SAMTools SNP 200446 200446 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C26%2C54%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 200636 200636 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C12%2C60%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.37%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 200702 200702 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42974 SAMTools SNP 201232 201232 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C34%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold42974 SAMTools SNP 201723 201723 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 202376 202376 186 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C27%2C0:51 scaffold42974 SAMTools SNP 202786 202786 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C19%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.00028%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold42974 SAMTools SNP 202828 202828 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C36%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold42974 SAMTools SNP 203652 203652 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C53%2C13%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 203832 203832 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0017%2C1%2C1%2C9.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold42974 SAMTools SNP 203834 203834 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C7%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.69%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold42974 SAMTools SNP 204327 204327 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 204347 204347 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 204359 204359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42974 SAMTools SNP 204564 204564 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold42990 SAMTools SNP 13617 13617 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold42990 SAMTools SNP 13621 13621 55.8 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold42990 SAMTools SNP 13633 13633 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00049%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold42990 SAMTools SNP 14540 14540 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42990 SAMTools SNP 14627 14627 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold42990 SAMTools SNP 14732 14732 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold42990 SAMTools SNP 14748 14748 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold42990 SAMTools SNP 15327 15327 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 15330 15330 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 16168 16168 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42990 SAMTools SNP 16177 16177 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D48%3BFQ%3D81%3BPV4%3D0.31%2C1%2C0.07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C210:99 scaffold42990 SAMTools SNP 16213 16213 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C14%2C0%3BMQ%3D38%3BFQ%3D74%3BPV4%3D0.39%2C0.0086%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C101:99 scaffold42990 SAMTools SNP 17491 17491 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00025%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold42990 SAMTools SNP 17499 17499 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42990 SAMTools SNP 17503 17503 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42990 SAMTools SNP 17527 17527 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42990 SAMTools SNP 19635 19635 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D170%3BPV4%3D1%2C0.28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C225:99 scaffold42990 SAMTools SNP 19678 19678 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold42990 SAMTools SNP 20301 20301 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42990 SAMTools SNP 20754 20754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42990 SAMTools SNP 20784 20784 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42990 SAMTools SNP 20952 20952 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold42990 SAMTools SNP 21371 21371 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 28820 28820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42990 SAMTools SNP 28841 28841 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C48%2C0%2C48%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.5%2C5.6e-21%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold42990 SAMTools SNP 29212 29212 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C75%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42990 SAMTools SNP 29296 29296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C43%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold42990 SAMTools SNP 29305 29305 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C66%2C0%2C24%3BMQ%3D50%3BFQ%3D67%3BPV4%3D5.7e-05%2C1%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold42990 SAMTools SNP 29308 29308 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C66%2C0%2C24%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.00022%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold42990 SAMTools SNP 30252 30252 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42990 SAMTools SNP 32074 32074 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold42990 SAMTools SNP 32938 32938 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C255%2C0:99 scaffold42990 SAMTools SNP 33262 33262 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.18%2C4.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold42990 SAMTools SNP 36682 36682 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C96%2C2%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.089%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold42990 SAMTools SNP 48014 48014 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 48043 48043 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 48566 48566 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42990 SAMTools SNP 48807 48807 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold42990 SAMTools SNP 66919 66919 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold42990 SAMTools SNP 67100 67100 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42990 SAMTools SNP 70826 70826 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold42990 SAMTools SNP 110107 110107 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold42990 SAMTools SNP 114424 114424 36.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold42990 SAMTools SNP 116288 116288 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 116312 116312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 120284 120284 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 122653 122653 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42990 SAMTools SNP 122677 122677 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold42990 SAMTools SNP 124550 124550 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42990 SAMTools SNP 138735 138735 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 138944 138944 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 161465 161465 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C24%2C0:45 scaffold42990 SAMTools SNP 172122 172122 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold42990 SAMTools SNP 172228 172228 43.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold42990 SAMTools SNP 172585 172585 16.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold42990 SAMTools SNP 172706 172706 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42990 SAMTools SNP 172714 172714 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold42990 SAMTools SNP 173973 173973 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 174551 174551 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold42990 SAMTools SNP 180616 180616 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.062%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C2:5 scaffold42990 SAMTools SNP 181280 181280 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42990 SAMTools SNP 182168 182168 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 182183 182183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 182195 182195 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 182225 182225 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42990 SAMTools SNP 183083 183083 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold42990 SAMTools SNP 183101 183101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold42990 SAMTools SNP 184628 184628 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C87%2C0:99 scaffold42990 SAMTools SNP 184643 184643 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C11%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.013%2C6.2e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold42990 SAMTools SNP 185042 185042 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C250:99 scaffold42990 SAMTools SNP 185398 185398 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.059%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42990 SAMTools SNP 185985 185985 149 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C19%2C1%2C172%2C0%2C169:33 scaffold42990 SAMTools SNP 186357 186357 138 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C33%2C18%2C164%2C0%2C161:27 scaffold42990 SAMTools SNP 186462 186462 42.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold42990 SAMTools SNP 186640 186640 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 186655 186655 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 189509 189509 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 189534 189534 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42990 SAMTools SNP 189626 189626 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42990 SAMTools SNP 190566 190566 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.33%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C74:77 scaffold42990 SAMTools SNP 190623 190623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42990 SAMTools SNP 191137 191137 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42990 SAMTools SNP 191155 191155 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42990 SAMTools SNP 192067 192067 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42990 SAMTools SNP 192260 192260 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.041%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold42990 SAMTools SNP 193166 193166 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold42990 SAMTools SNP 193203 193203 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42990 SAMTools SNP 193623 193623 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C18%2C0:33 scaffold42990 SAMTools SNP 193668 193668 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold42990 SAMTools SNP 193712 193712 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold42990 SAMTools SNP 194189 194189 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold42990 SAMTools SNP 194255 194255 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C134:99 scaffold42990 SAMTools SNP 194399 194399 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold42990 SAMTools SNP 195342 195342 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42990 SAMTools SNP 195361 195361 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42990 SAMTools SNP 195460 195460 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C8.7e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold42990 SAMTools SNP 200722 200722 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold42990 SAMTools SNP 201787 201787 42.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold42990 SAMTools SNP 205397 205397 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42990 SAMTools SNP 205415 205415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold42990 SAMTools SNP 205451 205451 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold42990 SAMTools SNP 205463 205463 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0031%2C0.053%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold42990 SAMTools SNP 206021 206021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42990 SAMTools SNP 206036 206036 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C39%2C17%2C5%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.32%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold42990 SAMTools SNP 206037 206037 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C67%2C32%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold42990 SAMTools SNP 207039 207039 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C3%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C129%2C0:99 scaffold42994 SAMTools SNP 2100 2100 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold42994 SAMTools SNP 2455 2455 63.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold42994 SAMTools SNP 3513 3513 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold42994 SAMTools SNP 7252 7252 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold42994 SAMTools SNP 7459 7459 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42994 SAMTools SNP 7465 7465 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold42994 SAMTools SNP 7962 7962 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42994 SAMTools SNP 8070 8070 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 8121 8121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42994 SAMTools SNP 8533 8533 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42994 SAMTools SNP 8554 8554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42994 SAMTools SNP 9001 9001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold42994 SAMTools SNP 9133 9133 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C19%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C235%2C0:99 scaffold42994 SAMTools SNP 9682 9682 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold42994 SAMTools SNP 9783 9783 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold42994 SAMTools SNP 15041 15041 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C3.1e-12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold42994 SAMTools SNP 15673 15673 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42994 SAMTools SNP 15782 15782 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold42994 SAMTools SNP 15808 15808 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold42994 SAMTools SNP 15818 15818 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold42994 SAMTools SNP 16153 16153 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 16245 16245 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42994 SAMTools SNP 17066 17066 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42994 SAMTools SNP 17144 17144 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold42994 SAMTools SNP 17180 17180 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 17375 17375 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 17562 17562 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42994 SAMTools SNP 17649 17649 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.61%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold42994 SAMTools SNP 18295 18295 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C196:46 scaffold42994 SAMTools SNP 20081 20081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold42994 SAMTools SNP 21298 21298 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C5.1e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold42994 SAMTools SNP 21341 21341 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold42994 SAMTools SNP 21710 21710 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.073%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C82:85 scaffold42994 SAMTools SNP 25668 25668 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold42994 SAMTools SNP 26905 26905 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42994 SAMTools SNP 26930 26930 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42994 SAMTools SNP 28806 28806 14.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold42994 SAMTools SNP 45021 45021 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D200%2C17%2C207%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1.2e-05%2C1.3e-104%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold42994 SAMTools SNP 45582 45582 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C2%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.1%2C0.17%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold42994 SAMTools SNP 46654 46654 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C7%2C0%3BMQ%3D38%3BFQ%3D75%3BPV4%3D0.33%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold42994 SAMTools SNP 46700 46700 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C42%2C13%3BMQ%3D41%3BFQ%3D80%3BPV4%3D0.19%2C0.1%2C0.0067%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C107:99 scaffold42994 SAMTools SNP 48496 48496 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C41%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold42994 SAMTools SNP 51008 51008 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C76%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.38%2C6.2e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold42994 SAMTools SNP 52151 52151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C19%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold42994 SAMTools SNP 52486 52486 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C2.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C197:75 scaffold42994 SAMTools SNP 52543 52543 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold42994 SAMTools SNP 53871 53871 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C9%2C58%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold42994 SAMTools SNP 53877 53877 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C21%2C73%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C7.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 54264 54264 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.19%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 54677 54677 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C1%2C26%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.64%2C1.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold42994 SAMTools SNP 57579 57579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 57615 57615 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold42994 SAMTools SNP 57876 57876 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 59876 59876 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C37%2C73%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 62936 62936 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C3%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 67839 67839 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C12%2C10%3BMQ%3D41%3BFQ%3D132%3BPV4%3D0.00071%2C2.2e-15%2C0.00017%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C218:99 scaffold42994 SAMTools SNP 87877 87877 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.19%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold42994 SAMTools SNP 87898 87898 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.29%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold42994 SAMTools SNP 88376 88376 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold42994 SAMTools SNP 88398 88398 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42994 SAMTools SNP 89427 89427 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 92052 92052 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 92722 92722 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 92741 92741 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42994 SAMTools SNP 94695 94695 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold42994 SAMTools SNP 94713 94713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold42994 SAMTools SNP 94877 94877 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C223:99 scaffold42994 SAMTools SNP 95672 95672 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 95678 95678 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 95743 95743 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 95780 95780 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42994 SAMTools SNP 95792 95792 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42994 SAMTools SNP 97181 97181 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42994 SAMTools SNP 98323 98323 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold42994 SAMTools SNP 98333 98333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 98750 98750 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 99350 99350 28.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold42994 SAMTools SNP 99466 99466 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42994 SAMTools SNP 99491 99491 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42994 SAMTools SNP 99530 99530 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold42994 SAMTools SNP 100304 100304 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42994 SAMTools SNP 103566 103566 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold42994 SAMTools SNP 103592 103592 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold42994 SAMTools SNP 103847 103847 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold42994 SAMTools SNP 106944 106944 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold42994 SAMTools SNP 107007 107007 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C64%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 108224 108224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold42994 SAMTools SNP 108227 108227 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold42994 SAMTools SNP 108621 108621 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold42994 SAMTools SNP 108675 108675 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.52%2C0.012%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold42994 SAMTools SNP 108985 108985 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 110002 110002 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C53%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold42994 SAMTools SNP 110023 110023 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold42994 SAMTools SNP 112378 112378 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 112666 112666 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold42994 SAMTools SNP 112687 112687 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold42994 SAMTools SNP 112976 112976 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold42994 SAMTools SNP 113481 113481 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold42994 SAMTools SNP 113999 113999 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold42994 SAMTools SNP 114027 114027 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42994 SAMTools SNP 114035 114035 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold42994 SAMTools SNP 114053 114053 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.045%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C107:99 scaffold42994 SAMTools SNP 114071 114071 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D9.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C138:99 scaffold42994 SAMTools SNP 114399 114399 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42994 SAMTools SNP 114783 114783 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 114795 114795 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold42994 SAMTools SNP 114857 114857 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.0097%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C80:33 scaffold42994 SAMTools SNP 117162 117162 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C32:35 scaffold42994 SAMTools SNP 117549 117549 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C4.5e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C29:32 scaffold42994 SAMTools SNP 118906 118906 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 125191 125191 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold42994 SAMTools SNP 125550 125550 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold42994 SAMTools SNP 128213 128213 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 128389 128389 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 131995 131995 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold42994 SAMTools SNP 132220 132220 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 132263 132263 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 132688 132688 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 132709 132709 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold42994 SAMTools SNP 132754 132754 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold42994 SAMTools SNP 133118 133118 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C54%2C0:99 scaffold42994 SAMTools SNP 133142 133142 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 133181 133181 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 134192 134192 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold42994 SAMTools SNP 134597 134597 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 134620 134620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 135301 135301 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold42994 SAMTools SNP 135519 135519 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold42994 SAMTools SNP 135566 135566 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold42994 SAMTools SNP 135883 135883 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold42994 SAMTools SNP 140322 140322 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 140437 140437 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42994 SAMTools SNP 140799 140799 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42994 SAMTools SNP 141043 141043 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold42994 SAMTools SNP 141456 141456 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 141498 141498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 141510 141510 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold42994 SAMTools SNP 141741 141741 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 144270 144270 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 144279 144279 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 148867 148867 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold42994 SAMTools SNP 148906 148906 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 148919 148919 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold42994 SAMTools SNP 150138 150138 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 150149 150149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold42994 SAMTools SNP 152519 152519 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold42994 SAMTools SNP 152879 152879 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 152892 152892 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold42994 SAMTools SNP 152936 152936 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold42994 SAMTools SNP 154229 154229 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold42994 SAMTools SNP 154366 154366 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold42994 SAMTools SNP 154390 154390 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold42994 SAMTools SNP 154452 154452 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43 SAMTools SNP 52676 52676 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C77:80 scaffold43 SAMTools SNP 52685 52685 26.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold43 SAMTools SNP 87933 87933 6.21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-7.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C21:26 scaffold43 SAMTools SNP 88297 88297 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43 SAMTools SNP 91012 91012 56.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold43 SAMTools SNP 91384 91384 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43 SAMTools SNP 91804 91804 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.4%2C1.6e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C74:40 scaffold43 SAMTools SNP 93432 93432 41.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43 SAMTools SNP 109610 109610 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold43 SAMTools SNP 123253 123253 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43 SAMTools SNP 123461 123461 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 132719 132719 15.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43 SAMTools SNP 133008 133008 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43 SAMTools SNP 133049 133049 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43 SAMTools SNP 134861 134861 26.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold43 SAMTools SNP 152400 152400 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43 SAMTools SNP 152401 152401 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.34%2C1%2C3.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold43 SAMTools SNP 152745 152745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43 SAMTools SNP 154640 154640 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43 SAMTools SNP 154851 154851 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C69%2C0:99 scaffold43 SAMTools SNP 154976 154976 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C66%2C0:99 scaffold43 SAMTools SNP 159925 159925 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43 SAMTools SNP 159932 159932 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold43 SAMTools SNP 160182 160182 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C27%2C0:51 scaffold43 SAMTools SNP 161230 161230 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43 SAMTools SNP 161464 161464 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43 SAMTools SNP 162181 162181 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C12%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 162221 162221 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C45%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 164363 164363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C10%2C39%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 164405 164405 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C66%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43 SAMTools SNP 164764 164764 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C0%2C36%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43 SAMTools SNP 165068 165068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43 SAMTools SNP 166577 166577 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C7%2C1%3BMQ%3D48%3BFQ%3D88%3BPV4%3D0.42%2C0.43%2C0.28%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43 SAMTools SNP 167251 167251 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C6%2C1%3BMQ%3D48%3BFQ%3D75%3BPV4%3D0.034%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43 SAMTools SNP 167287 167287 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C5%2C4%3BMQ%3D48%3BFQ%3D151%3BPV4%3D0.004%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43 SAMTools SNP 167789 167789 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C4%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C151%2C0:99 scaffold43 SAMTools SNP 167918 167918 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C38%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C169%2C0:99 scaffold43 SAMTools SNP 171700 171700 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43 SAMTools SNP 171883 171883 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 171908 171908 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43 SAMTools SNP 172283 172283 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43 SAMTools SNP 176299 176299 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 176433 176433 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43 SAMTools SNP 179316 179316 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 179385 179385 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 179405 179405 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43 SAMTools SNP 179467 179467 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 182662 182662 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43 SAMTools SNP 182691 182691 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.43%2C0.00042%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C163:56 scaffold43 SAMTools SNP 182872 182872 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43 SAMTools SNP 182915 182915 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43 SAMTools SNP 182941 182941 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43 SAMTools SNP 190773 190773 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 191445 191445 57.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold43 SAMTools SNP 191472 191472 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43 SAMTools SNP 221230 221230 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43 SAMTools SNP 228270 228270 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C6%3BMQ%3D36%3BFQ%3D86%3BPV4%3D1%2C0.24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C209:99 scaffold43 SAMTools SNP 228676 228676 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C2%3BMQ%3D24%3BFQ%3D14.7%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C52:44 scaffold43 SAMTools SNP 228705 228705 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43 SAMTools SNP 229290 229290 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C12%2C1%3BMQ%3D46%3BFQ%3D122%3BPV4%3D0.58%2C0.0011%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C195:99 scaffold43 SAMTools SNP 229307 229307 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C4%3BMQ%3D37%3BFQ%3D64%3BPV4%3D0.63%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C91:94 scaffold43 SAMTools SNP 230082 230082 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C29%2C1%3BMQ%3D29%3BFQ%3D-54%3BPV4%3D0.18%2C1.8e-18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C27%2C0:46 scaffold43 SAMTools SNP 230166 230166 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C20%3BMQ%3D11%3BFQ%3D-72%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C45%2C0:52 scaffold43 SAMTools SNP 230442 230442 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C8%3BMQ%3D42%3BFQ%3D107%3BPV4%3D0.14%2C0.48%2C0.038%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C134:99 scaffold43 SAMTools SNP 230448 230448 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D49%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C234:99 scaffold43 SAMTools SNP 230694 230694 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D46%3BFQ%3D55%3BPV4%3D1%2C0.27%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C82:85 scaffold43 SAMTools SNP 231387 231387 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43 SAMTools SNP 232682 232682 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 232693 232693 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 258147 258147 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C33%2C0:63 scaffold43 SAMTools SNP 270099 270099 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43 SAMTools SNP 270141 270141 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 270222 270222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43 SAMTools SNP 270253 270253 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43 SAMTools SNP 270712 270712 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43 SAMTools SNP 270727 270727 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold43 SAMTools SNP 270957 270957 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43 SAMTools SNP 272089 272089 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D41%3BFQ%3D50.9%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C80:81 scaffold43 SAMTools SNP 272146 272146 5.85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D20%3BFQ%3D-29%3BPV4%3D0.17%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C2%2C0:3 scaffold43 SAMTools SNP 272164 272164 5.85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D20%3BFQ%3D-29%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C2%2C0:3 scaffold43 SAMTools SNP 273194 273194 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43 SAMTools SNP 273199 273199 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43 SAMTools SNP 277924 277924 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43 SAMTools SNP 278929 278929 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 278941 278941 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 348272 348272 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 351182 351182 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C54:57 scaffold43 SAMTools SNP 376066 376066 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold43 SAMTools SNP 376999 376999 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.32%2C1%2C6.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43 SAMTools SNP 380255 380255 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 380288 380288 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 383356 383356 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43 SAMTools SNP 383361 383361 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43 SAMTools SNP 383390 383390 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43 SAMTools SNP 395978 395978 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold43 SAMTools SNP 395993 395993 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43 SAMTools SNP 396097 396097 53.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold43 SAMTools SNP 445318 445318 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.43%2C9.5e-08%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C121:99 scaffold43 SAMTools SNP 447378 447378 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold43 SAMTools SNP 508196 508196 6.95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold43 SAMTools SNP 508304 508304 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold43 SAMTools SNP 508314 508314 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold43 SAMTools SNP 508749 508749 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43 SAMTools SNP 509325 509325 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43 SAMTools SNP 509635 509635 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 510091 510091 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 514056 514056 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43 SAMTools SNP 515238 515238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43 SAMTools SNP 515613 515613 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C18%2C0:33 scaffold43 SAMTools SNP 515629 515629 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 538851 538851 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold43 SAMTools SNP 538944 538944 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.4e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C224:61 scaffold43 SAMTools SNP 543949 543949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43 SAMTools SNP 544069 544069 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C200:62 scaffold43 SAMTools SNP 544099 544099 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43 SAMTools SNP 544742 544742 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43 SAMTools SNP 544835 544835 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C71:74 scaffold43 SAMTools SNP 545093 545093 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43 SAMTools SNP 545096 545096 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43 SAMTools SNP 545520 545520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 545559 545559 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 545595 545595 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43 SAMTools SNP 545628 545628 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43 SAMTools SNP 545634 545634 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43 SAMTools SNP 546054 546054 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C104:99 scaffold43 SAMTools SNP 546564 546564 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43 SAMTools SNP 546669 546669 113 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C47%2C35%2C140%2C0%2C137:21 scaffold43 SAMTools SNP 547117 547117 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold43 SAMTools SNP 547174 547174 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold43 SAMTools SNP 547196 547196 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C168:33 scaffold43 SAMTools SNP 547764 547764 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C158:76 scaffold43 SAMTools SNP 547785 547785 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43 SAMTools SNP 547836 547836 54.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold43 SAMTools SNP 553535 553535 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 553664 553664 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 557597 557597 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C63%2C0:99 scaffold43 SAMTools SNP 558850 558850 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 559315 559315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C52%2C3%3BMQ%3D44%3BFQ%3D224%3BPV4%3D0.6%2C0.44%2C0.003%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43 SAMTools SNP 559384 559384 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C4%2C3%3BMQ%3D38%3BFQ%3D62%3BPV4%3D0.22%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43 SAMTools SNP 559387 559387 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C42%2C4%2C6%3BMQ%3D41%3BFQ%3D154%3BPV4%3D0.43%2C0.41%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43 SAMTools SNP 559568 559568 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C2%2C15%3BMQ%3D45%3BFQ%3D143%3BPV4%3D0.72%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43 SAMTools SNP 559649 559649 83.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C10%3BMQ%3D33%3BFQ%3D-43%3BPV4%3D0.011%2C0.1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C16%2C0:29 scaffold43 SAMTools SNP 559792 559792 86.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D31%3BFQ%3D-42%3BPV4%3D0.12%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C15%2C0:27 scaffold43 SAMTools SNP 559807 559807 90.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C21%2C0:39 scaffold43 SAMTools SNP 559936 559936 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C30%2C0:57 scaffold43 SAMTools SNP 559990 559990 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0013%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold43 SAMTools SNP 560014 560014 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold43 SAMTools SNP 560602 560602 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43 SAMTools SNP 560611 560611 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43 SAMTools SNP 560635 560635 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold43 SAMTools SNP 560647 560647 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D40%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C107:72 scaffold43 SAMTools SNP 562253 562253 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 562283 562283 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold43 SAMTools SNP 563109 563109 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C24%2C5%2C0%3BMQ%3D49%3BFQ%3D6.2%3BPV4%3D0.00053%2C3e-11%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43 SAMTools SNP 563593 563593 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C4%3BMQ%3D38%3BFQ%3D36%3BPV4%3D0.16%2C1%2C0.065%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43 SAMTools SNP 564511 564511 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C39%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0005%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43 SAMTools SNP 564538 564538 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C41%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43 SAMTools SNP 564947 564947 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43 SAMTools SNP 564971 564971 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 564974 564974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 565010 565010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 565361 565361 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.16%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold43 SAMTools SNP 565528 565528 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C77:80 scaffold43 SAMTools SNP 565538 565538 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43 SAMTools SNP 565556 565556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 565812 565812 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D2%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C32:35 scaffold43 SAMTools SNP 565842 565842 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C71%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C1%2C1%2C5.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43 SAMTools SNP 566627 566627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C15%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.8e-06%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 567503 567503 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold43 SAMTools SNP 567585 567585 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C0.23%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold43 SAMTools SNP 567621 567621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43 SAMTools SNP 568494 568494 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43 SAMTools SNP 568524 568524 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C24:27 scaffold43 SAMTools SNP 569996 569996 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 576211 576211 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C9%2C14%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0011%2C3.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43 SAMTools SNP 586324 586324 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold43 SAMTools SNP 587791 587791 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.48%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold43 SAMTools SNP 588150 588150 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43 SAMTools SNP 588155 588155 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 590115 590115 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 590118 590118 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 590512 590512 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C235:69 scaffold43 SAMTools SNP 590551 590551 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.3%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold43 SAMTools SNP 591113 591113 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C252:99 scaffold43 SAMTools SNP 591146 591146 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00046%2C0.017%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43 SAMTools SNP 591149 591149 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00046%2C0.0026%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43 SAMTools SNP 592091 592091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.064%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 592820 592820 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 592904 592904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 593107 593107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 593501 593501 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43 SAMTools SNP 594336 594336 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold43 SAMTools SNP 597014 597014 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C66%2C3%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 599245 599245 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C57%2C2%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 604509 604509 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 605468 605468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C23%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43 SAMTools SNP 605474 605474 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43 SAMTools SNP 605535 605535 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.28%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43 SAMTools SNP 606242 606242 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 606789 606789 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43 SAMTools SNP 607970 607970 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 607973 607973 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 607992 607992 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43 SAMTools SNP 608307 608307 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 610320 610320 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C47%2C3%2C31%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.73%2C8.5e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43 SAMTools SNP 610433 610433 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C6%2C73%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C4.8e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 610481 610481 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C60%2C7%2C52%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.47%2C1.8e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43 SAMTools SNP 611456 611456 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43 SAMTools SNP 611473 611473 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43 SAMTools SNP 613925 613925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C21%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.41%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 622257 622257 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C52%3BMQ%3D49%3BFQ%3D-146%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold43 SAMTools SNP 626388 626388 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43 SAMTools SNP 645547 645547 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 670122 670122 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C50:53 scaffold43 SAMTools SNP 670125 670125 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43 SAMTools SNP 670146 670146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43 SAMTools SNP 670294 670294 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 670781 670781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43 SAMTools SNP 673704 673704 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C66%2C16%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 673821 673821 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C4%2C11%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.43%2C4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43 SAMTools SNP 674479 674479 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C214%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C4.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C255%2C0:99 scaffold43 SAMTools SNP 674836 674836 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold43 SAMTools SNP 675323 675323 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43 SAMTools SNP 675536 675536 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C35:38 scaffold43 SAMTools SNP 675695 675695 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold43 SAMTools SNP 675704 675704 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold43 SAMTools SNP 675932 675932 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43 SAMTools SNP 676069 676069 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold43 SAMTools SNP 676094 676094 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C81%2C0:99 scaffold43 SAMTools SNP 676235 676235 39.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold43 SAMTools SNP 676325 676325 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43 SAMTools SNP 676674 676674 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.14%2C7.2e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C71:50 scaffold43 SAMTools SNP 676984 676984 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43 SAMTools SNP 676993 676993 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43 SAMTools SNP 677034 677034 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43 SAMTools SNP 677541 677541 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C15%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D4.5e-07%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43 SAMTools SNP 677600 677600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C0%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43 SAMTools SNP 677854 677854 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C42%2C0%2C46%3BMQ%3D50%3BFQ%3D211%3BPV4%3D2.8e-08%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43 SAMTools SNP 677953 677953 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C12%2C30%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.032%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold43 SAMTools SNP 677965 677965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C130%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43 SAMTools SNP 679790 679790 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C36%2C0:66 scaffold43 SAMTools SNP 679988 679988 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43 SAMTools SNP 680759 680759 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43012 SAMTools SNP 23778 23778 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 23827 23827 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43012 SAMTools SNP 23912 23912 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43012 SAMTools SNP 28942 28942 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold43012 SAMTools SNP 31440 31440 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43012 SAMTools SNP 31826 31826 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43012 SAMTools SNP 31949 31949 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43012 SAMTools SNP 32003 32003 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold43012 SAMTools SNP 32282 32282 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold43012 SAMTools SNP 32450 32450 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 32846 32846 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 32855 32855 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 33506 33506 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 34016 34016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 34028 34028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 37679 37679 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 66582 66582 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 86189 86189 53.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold43012 SAMTools SNP 88090 88090 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43012 SAMTools SNP 89333 89333 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1.6e-09%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C23:26 scaffold43012 SAMTools SNP 89343 89343 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C8.8e-10%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C23:26 scaffold43012 SAMTools SNP 89426 89426 116 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C23%2C11%2C143%2C0%2C140:21 scaffold43012 SAMTools SNP 89706 89706 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold43012 SAMTools SNP 89737 89737 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43012 SAMTools SNP 89826 89826 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43012 SAMTools SNP 90614 90614 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D94.8%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C122:99 scaffold43012 SAMTools SNP 90619 90619 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C54:40 scaffold43012 SAMTools SNP 90944 90944 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 91004 91004 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 92145 92145 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 93006 93006 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 93047 93047 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 93059 93059 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 102078 102078 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43012 SAMTools SNP 102332 102332 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43012 SAMTools SNP 115541 115541 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43012 SAMTools SNP 116212 116212 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold43012 SAMTools SNP 116274 116274 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.093%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C110:56 scaffold43012 SAMTools SNP 117610 117610 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold43012 SAMTools SNP 117666 117666 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 118700 118700 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C156:74 scaffold43012 SAMTools SNP 119514 119514 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43012 SAMTools SNP 124606 124606 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43012 SAMTools SNP 124867 124867 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43012 SAMTools SNP 124869 124869 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43012 SAMTools SNP 125579 125579 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 125962 125962 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 126034 126034 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold43012 SAMTools SNP 127394 127394 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43012 SAMTools SNP 127417 127417 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43012 SAMTools SNP 127579 127579 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43012 SAMTools SNP 128103 128103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43012 SAMTools SNP 128121 128121 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold43012 SAMTools SNP 131647 131647 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.58%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43012 SAMTools SNP 132048 132048 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold43012 SAMTools SNP 132088 132088 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43012 SAMTools SNP 132096 132096 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 133800 133800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43012 SAMTools SNP 133858 133858 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C0%2C11%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43012 SAMTools SNP 133866 133866 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0222%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold43012 SAMTools SNP 134321 134321 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 134324 134324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 134354 134354 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 134396 134396 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43012 SAMTools SNP 134980 134980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43012 SAMTools SNP 135007 135007 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold43012 SAMTools SNP 135022 135022 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43012 SAMTools SNP 135049 135049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43012 SAMTools SNP 136207 136207 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C115:99 scaffold43012 SAMTools SNP 136255 136255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43012 SAMTools SNP 136957 136957 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C30%2C0:57 scaffold43012 SAMTools SNP 136969 136969 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43012 SAMTools SNP 137116 137116 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold43012 SAMTools SNP 137204 137204 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 137455 137455 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 173843 173843 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.00023%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C237:99 scaffold43012 SAMTools SNP 174271 174271 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C50%2C5%2C25%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.024%2C1.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold43012 SAMTools SNP 174394 174394 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C4%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43012 SAMTools SNP 174736 174736 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C4%2C11%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.36%2C3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43012 SAMTools SNP 174886 174886 28.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43012 SAMTools SNP 174889 174889 28.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43012 SAMTools SNP 175248 175248 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D2.9e-05%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43012 SAMTools SNP 175381 175381 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C28%2C4%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.71%2C0.034%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43012 SAMTools SNP 175432 175432 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43012 SAMTools SNP 175834 175834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43012 SAMTools SNP 176287 176287 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.27%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C219:99 scaffold43012 SAMTools SNP 177251 177251 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C65%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 177532 177532 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C40%2C1%2C11%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43012 SAMTools SNP 177544 177544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 177637 177637 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43012 SAMTools SNP 177883 177883 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 177919 177919 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C4%2C6%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43012 SAMTools SNP 177955 177955 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43012 SAMTools SNP 178245 178245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 179147 179147 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43012 SAMTools SNP 179162 179162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 179687 179687 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C32%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 179777 179777 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C30%2C94%2C60%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C2.2e-162%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold43012 SAMTools SNP 179846 179846 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 180403 180403 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.32%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43012 SAMTools SNP 180422 180422 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.35%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43012 SAMTools SNP 180962 180962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43012 SAMTools SNP 181010 181010 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43012 SAMTools SNP 181082 181082 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 181085 181085 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 181603 181603 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C1%2C50%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43012 SAMTools SNP 181649 181649 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C12%2C51%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 182106 182106 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C23%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 182658 182658 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 182670 182670 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 183099 183099 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C152%2C61%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 183590 183590 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C6%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43012 SAMTools SNP 183596 183596 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.15%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43012 SAMTools SNP 184389 184389 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C5%2C55%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 184842 184842 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold43012 SAMTools SNP 185337 185337 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.22%2C0.18%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43012 SAMTools SNP 185395 185395 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C17%2C61%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 185566 185566 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C6%2C61%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.44%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43012 SAMTools SNP 185597 185597 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C6%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.35%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43012 SAMTools SNP 185906 185906 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C72%2C0:99 scaffold43012 SAMTools SNP 186434 186434 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C29%2C165%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C3e-110%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 186536 186536 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D491%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C227%2C252%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.024%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 186580 186580 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C132%2C56%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.6e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold43012 SAMTools SNP 187337 187337 64.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold43012 SAMTools SNP 188121 188121 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C12%2C71%3BMQ%3D50%3BFQ%3D-184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43012 SAMTools SNP 188160 188160 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C45%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43012 SAMTools SNP 188724 188724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C35%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 188757 188757 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C27%2C54%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 189727 189727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C6%2C85%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 189921 189921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C55%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-07%2C1.7e-05%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 190017 190017 86.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C12%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D1%2C6.4e-07%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C5%2C0:9 scaffold43012 SAMTools SNP 190038 190038 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C43:46 scaffold43012 SAMTools SNP 190041 190041 76.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C12%2C0:21 scaffold43012 SAMTools SNP 190086 190086 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C16%2C44%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.011%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43012 SAMTools SNP 190276 190276 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D206%2C7%2C107%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.28%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43012 SAMTools SNP 190572 190572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C297%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 190716 190716 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C4%2C10%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.029%2C0.011%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43012 SAMTools SNP 190728 190728 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C6%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00024%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43012 SAMTools SNP 190761 190761 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold43012 SAMTools SNP 191299 191299 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.44%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold43012 SAMTools SNP 191314 191314 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43012 SAMTools SNP 191315 191315 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43012 SAMTools SNP 191326 191326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43012 SAMTools SNP 192028 192028 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43012 SAMTools SNP 192386 192386 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C3%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 192888 192888 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C52%2C12%2C53%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.057%2C2.5e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43012 SAMTools SNP 192915 192915 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43012 SAMTools SNP 192918 192918 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C66%2C1%2C19%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C4.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold43012 SAMTools SNP 193122 193122 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C21%2C98%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C8.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 193358 193358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C121%2C52%2C52%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.035%2C0.13%2C0.00033%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 193393 193393 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C147%2C9%2C35%3BMQ%3D48%3BFQ%3D75%3BPV4%3D0.45%2C0.044%2C0.13%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43012 SAMTools SNP 193405 193405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C50%3BMQ%3D46%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43012 SAMTools SNP 193522 193522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C39%2C16%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 193537 193537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C19%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 193857 193857 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C21%2C133%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00048%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 194022 194022 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C7%2C159%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 194179 194179 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-14%2C2.2e-38%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 194203 194203 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D309%2C17%2C187%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0005%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43012 SAMTools SNP 194221 194221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D607%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D363%2C2%2C242%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 194923 194923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D849%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C653%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 195051 195051 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C89%2C10%3BMQ%3D50%3BFQ%3D-229%3BPV4%3D3.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43012 SAMTools SNP 195533 195533 173 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C20%2C49%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43012 SAMTools SNP 196248 196248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 196371 196371 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C9%2C138%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 196401 196401 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C467%2C12%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 196713 196713 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C1%2C50%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 196731 196731 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C130%2C15%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.28%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 197445 197445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C19%2C129%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 198329 198329 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43012 SAMTools SNP 198338 198338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 198362 198362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D488%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C483%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 198546 198546 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D621%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D371%2C5%2C236%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 198681 198681 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C70%2C61%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-06%2C5.6e-18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 199128 199128 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C245:94 scaffold43012 SAMTools SNP 199143 199143 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C16%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43012 SAMTools SNP 199146 199146 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C34%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43012 SAMTools SNP 199179 199179 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D669%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D256%2C113%2C278%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-14%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 199215 199215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D759%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C116%2C318%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-15%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 199634 199634 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D736%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C325%2C50%2C309%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.38%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43012 SAMTools SNP 200386 200386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1021%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C379%2C629%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 202645 202645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.42%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 202681 202681 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C27%2C0:51 scaffold43012 SAMTools SNP 203134 203134 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C12%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 203206 203206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C29%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold43012 SAMTools SNP 203215 203215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C286%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 203516 203516 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1085%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D662%2C32%2C270%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.6%2C1.1e-14%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43012 SAMTools SNP 203612 203612 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1050%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C664%2C4%2C368%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.44%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43012 SAMTools SNP 203663 203663 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43012 SAMTools SNP 203675 203675 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43012 SAMTools SNP 204127 204127 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D854%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D334%2C3%2C503%2C14%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.079%2C3.1e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold43012 SAMTools SNP 204709 204709 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1238%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D684%2C46%2C472%2C25%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.38%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43012 SAMTools SNP 204768 204768 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1189%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C664%2C12%2C476%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 205336 205336 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C214%2C22%2C22%3BMQ%3D50%3BFQ%3D75%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43012 SAMTools SNP 205784 205784 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C42%2C11%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.004%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43012 SAMTools SNP 205872 205872 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C43%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0007%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 206299 206299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C84%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 206315 206315 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C46%2C18%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.21%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 206316 206316 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C45%2C18%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.0015%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 207128 207128 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C12%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 207944 207944 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43012 SAMTools SNP 207997 207997 97.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold43012 SAMTools SNP 208274 208274 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43012 SAMTools SNP 208397 208397 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C32%2C59%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43012 SAMTools SNP 208919 208919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43012 SAMTools SNP 209242 209242 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43024 SAMTools SNP 32682 32682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43024 SAMTools SNP 32685 32685 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43024 SAMTools SNP 56676 56676 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold43024 SAMTools SNP 57599 57599 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43024 SAMTools SNP 57806 57806 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43024 SAMTools SNP 65488 65488 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43024 SAMTools SNP 65506 65506 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0012%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43024 SAMTools SNP 66272 66272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0011%2C0.064%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43024 SAMTools SNP 66296 66296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43024 SAMTools SNP 67091 67091 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.24%2C0.46%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43024 SAMTools SNP 67413 67413 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.066%2C2.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C145:97 scaffold43024 SAMTools SNP 69933 69933 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43024 SAMTools SNP 70751 70751 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0017%2C3.4e-12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43024 SAMTools SNP 70762 70762 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C20%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 76364 76364 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43024 SAMTools SNP 76370 76370 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43024 SAMTools SNP 76490 76490 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43024 SAMTools SNP 76807 76807 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.021%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold43024 SAMTools SNP 78750 78750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C1%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43024 SAMTools SNP 78828 78828 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C59%2C0%2C19%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43024 SAMTools SNP 79600 79600 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C5%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-06%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 83999 83999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43024 SAMTools SNP 84028 84028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C65%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43024 SAMTools SNP 84054 84054 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43024 SAMTools SNP 84095 84095 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 85330 85330 203 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.36%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold43024 SAMTools SNP 85354 85354 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.00031%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 85375 85375 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold43024 SAMTools SNP 89090 89090 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43024 SAMTools SNP 89107 89107 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43024 SAMTools SNP 90041 90041 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43024 SAMTools SNP 90974 90974 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43024 SAMTools SNP 91005 91005 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43024 SAMTools SNP 91536 91536 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C13%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43024 SAMTools SNP 91587 91587 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C25%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 91776 91776 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C25%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43024 SAMTools SNP 94300 94300 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C36%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 94348 94348 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C44%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 94360 94360 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C45%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 95736 95736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 95786 95786 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C19%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C86:89 scaffold43024 SAMTools SNP 95791 95791 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.04%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43024 SAMTools SNP 98914 98914 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold43024 SAMTools SNP 99046 99046 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C60%2C0:99 scaffold43024 SAMTools SNP 99198 99198 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43024 SAMTools SNP 102140 102140 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43024 SAMTools SNP 102158 102158 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold43024 SAMTools SNP 102206 102206 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C10%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0075%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43024 SAMTools SNP 106182 106182 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.02%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43024 SAMTools SNP 106454 106454 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.039%2C8.7e-05%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43024 SAMTools SNP 108709 108709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43024 SAMTools SNP 110182 110182 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43024 SAMTools SNP 110188 110188 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43024 SAMTools SNP 111504 111504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43024 SAMTools SNP 111825 111825 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.067%2C1%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43024 SAMTools SNP 111853 111853 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 112459 112459 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C59%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 113351 113351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43024 SAMTools SNP 113381 113381 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43024 SAMTools SNP 113674 113674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C26%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.073%2C0.39%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold43024 SAMTools SNP 113698 113698 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 114118 114118 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 114825 114825 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C22%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 117792 117792 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C55%2C5%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 117807 117807 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C8%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 118286 118286 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C43%2C10%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0034%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 118505 118505 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C0.00055%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43024 SAMTools SNP 119717 119717 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43024 SAMTools SNP 121009 121009 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43024 SAMTools SNP 122036 122036 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C4%3BMQ%3D44%3BFQ%3D177%3BPV4%3D0.044%2C0.026%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold43024 SAMTools SNP 122045 122045 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C2%2C8%3BMQ%3D45%3BFQ%3D198%3BPV4%3D0.0057%2C0.02%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43024 SAMTools SNP 122057 122057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C15%2C5%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.013%2C1%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 122553 122553 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C4%3BMQ%3D43%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43024 SAMTools SNP 122917 122917 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43024 SAMTools SNP 122952 122952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43024 SAMTools SNP 123247 123247 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.32%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C179:65 scaffold43024 SAMTools SNP 124403 124403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C16%2C55%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00076%2C8.8e-17%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 125430 125430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C19%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43024 SAMTools SNP 125442 125442 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43024 SAMTools SNP 126133 126133 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C45%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 126145 126145 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C11%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 126180 126180 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D23%2C33%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0077%2C0.00069%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43024 SAMTools SNP 126442 126442 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 128478 128478 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold43024 SAMTools SNP 129961 129961 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.47%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C182:61 scaffold43024 SAMTools SNP 131610 131610 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.14%2C2.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C231:66 scaffold43024 SAMTools SNP 131792 131792 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.028%2C7.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43024 SAMTools SNP 138827 138827 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C26%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43024 SAMTools SNP 138884 138884 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C33%2C5%2C19%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C8.8e-49%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43024 SAMTools SNP 140038 140038 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43024 SAMTools SNP 140110 140110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43024 SAMTools SNP 140129 140129 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.086%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43024 SAMTools SNP 140746 140746 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C13%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.22%2C3.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43024 SAMTools SNP 141400 141400 37.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold43024 SAMTools SNP 141652 141652 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C3:6 scaffold43024 SAMTools SNP 141793 141793 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C46%2C17%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.013%2C1.7e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43024 SAMTools SNP 141855 141855 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C29%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43024 SAMTools SNP 144808 144808 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold43024 SAMTools SNP 145423 145423 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C7.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43024 SAMTools SNP 145936 145936 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold43024 SAMTools SNP 146071 146071 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43024 SAMTools SNP 146439 146439 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43024 SAMTools SNP 146553 146553 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold43024 SAMTools SNP 165556 165556 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C209:99 scaffold43024 SAMTools SNP 166270 166270 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43024 SAMTools SNP 184828 184828 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43024 SAMTools SNP 185788 185788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43024 SAMTools SNP 187211 187211 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold43024 SAMTools SNP 187810 187810 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43024 SAMTools SNP 190499 190499 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43024 SAMTools SNP 190665 190665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C85%2C0%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 190689 190689 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43024 SAMTools SNP 201447 201447 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43024 SAMTools SNP 204318 204318 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C198:77 scaffold43024 SAMTools SNP 204333 204333 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C237:63 scaffold43024 SAMTools SNP 204340 204340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C113%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold43024 SAMTools SNP 207988 207988 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43024 SAMTools SNP 208050 208050 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C0%2C119%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43024 SAMTools SNP 209007 209007 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.12%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43024 SAMTools SNP 209451 209451 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C101%2C0%2C17%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C243:50 scaffold43024 SAMTools SNP 209464 209464 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C201:73 scaffold43024 SAMTools SNP 209466 209466 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C230:82 scaffold43024 SAMTools SNP 209486 209486 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43026 SAMTools SNP 1107 1107 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43026 SAMTools SNP 1111 1111 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold43026 SAMTools SNP 3108 3108 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43026 SAMTools SNP 6739 6739 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold43026 SAMTools SNP 6745 6745 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold43026 SAMTools SNP 6930 6930 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43026 SAMTools SNP 7151 7151 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43026 SAMTools SNP 7531 7531 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43026 SAMTools SNP 7654 7654 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43026 SAMTools SNP 7741 7741 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.1%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43026 SAMTools SNP 8297 8297 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C52%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C5.5e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C228:99 scaffold43026 SAMTools SNP 55143 55143 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43026 SAMTools SNP 62306 62306 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C41:44 scaffold43026 SAMTools SNP 62401 62401 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43026 SAMTools SNP 131401 131401 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43026 SAMTools SNP 134918 134918 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43026 SAMTools SNP 134942 134942 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43026 SAMTools SNP 136458 136458 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43026 SAMTools SNP 138315 138315 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43026 SAMTools SNP 149263 149263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 149267 149267 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 167327 167327 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43026 SAMTools SNP 167542 167542 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43026 SAMTools SNP 207161 207161 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 207287 207287 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 207499 207499 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 207566 207566 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43026 SAMTools SNP 209323 209323 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 209342 209342 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43026 SAMTools SNP 210842 210842 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D32%3BFQ%3D-30%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43028 SAMTools SNP 1192 1192 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold43028 SAMTools SNP 1578 1578 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C187:99 scaffold43028 SAMTools SNP 1605 1605 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43028 SAMTools SNP 1635 1635 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0.0009%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C127:28 scaffold43028 SAMTools SNP 1704 1704 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.019%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C179:99 scaffold43028 SAMTools SNP 2221 2221 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43028 SAMTools SNP 2244 2244 87.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold43028 SAMTools SNP 2488 2488 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43028 SAMTools SNP 2526 2526 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 3430 3430 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.5%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C79:82 scaffold43028 SAMTools SNP 3931 3931 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43028 SAMTools SNP 3934 3934 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43028 SAMTools SNP 3958 3958 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43028 SAMTools SNP 3976 3976 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.18%2C0.15%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold43028 SAMTools SNP 3982 3982 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43028 SAMTools SNP 10631 10631 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 10644 10644 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43028 SAMTools SNP 11844 11844 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43028 SAMTools SNP 12192 12192 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 14726 14726 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43028 SAMTools SNP 14763 14763 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C69%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43028 SAMTools SNP 18238 18238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C68%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43028 SAMTools SNP 23608 23608 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C5.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43028 SAMTools SNP 23620 23620 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C31%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C141%2C0:99 scaffold43028 SAMTools SNP 23764 23764 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C18%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0048%2C1.3e-15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43028 SAMTools SNP 24124 24124 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C26%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C199%2C0:99 scaffold43028 SAMTools SNP 24297 24297 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C8%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43028 SAMTools SNP 24475 24475 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C102%2C0:99 scaffold43028 SAMTools SNP 24519 24519 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43028 SAMTools SNP 24799 24799 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C1%2C22%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.19%2C2.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43028 SAMTools SNP 25429 25429 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C74%3BMQ%3D50%3BFQ%3D-245%3BPV4%3D1%2C5.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C218%2C0:99 scaffold43028 SAMTools SNP 25453 25453 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C71%3BMQ%3D50%3BFQ%3D-245%3BPV4%3D1%2C9.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C218%2C0:99 scaffold43028 SAMTools SNP 25579 25579 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.6e-12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43028 SAMTools SNP 26518 26518 75 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C51%2C0%2C100%2C31%2C97:99 scaffold43028 SAMTools SNP 27140 27140 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.1e-05%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43028 SAMTools SNP 27157 27157 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C111:66 scaffold43028 SAMTools SNP 27340 27340 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C2%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.27%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43028 SAMTools SNP 28626 28626 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43028 SAMTools SNP 28627 28627 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.63%2C0.42%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43028 SAMTools SNP 31496 31496 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C108:99 scaffold43028 SAMTools SNP 66831 66831 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 66838 66838 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 67313 67313 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43028 SAMTools SNP 67386 67386 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold43028 SAMTools SNP 68353 68353 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold43028 SAMTools SNP 68881 68881 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.25%2C1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C162:78 scaffold43028 SAMTools SNP 69186 69186 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C66%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C202%2C0:99 scaffold43028 SAMTools SNP 69592 69592 37.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold43028 SAMTools SNP 69750 69750 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold43028 SAMTools SNP 70677 70677 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold43028 SAMTools SNP 71187 71187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C13%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43028 SAMTools SNP 71406 71406 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C118:33 scaffold43028 SAMTools SNP 71670 71670 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43028 SAMTools SNP 71763 71763 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C30%2C0:57 scaffold43028 SAMTools SNP 72739 72739 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold43028 SAMTools SNP 73820 73820 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43028 SAMTools SNP 79133 79133 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43028 SAMTools SNP 79160 79160 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43028 SAMTools SNP 80698 80698 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43028 SAMTools SNP 80746 80746 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold43028 SAMTools SNP 80842 80842 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43028 SAMTools SNP 80851 80851 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43028 SAMTools SNP 81491 81491 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 81824 81824 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C21%2C0:39 scaffold43028 SAMTools SNP 82091 82091 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 82478 82478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43028 SAMTools SNP 82481 82481 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43028 SAMTools SNP 83070 83070 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 83462 83462 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 83663 83663 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 84104 84104 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 84110 84110 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 84550 84550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43028 SAMTools SNP 84880 84880 105 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C117%2C202%2C0%2C190:33 scaffold43028 SAMTools SNP 85591 85591 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold43028 SAMTools SNP 85612 85612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43028 SAMTools SNP 85956 85956 61.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C15%2C0:27 scaffold43028 SAMTools SNP 86515 86515 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold43028 SAMTools SNP 86542 86542 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold43028 SAMTools SNP 86617 86617 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold43028 SAMTools SNP 86635 86635 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43028 SAMTools SNP 87026 87026 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 87029 87029 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 87628 87628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.53%2C0.097%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold43028 SAMTools SNP 87640 87640 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold43028 SAMTools SNP 87670 87670 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43028 SAMTools SNP 88146 88146 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold43028 SAMTools SNP 88223 88223 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 88899 88899 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43028 SAMTools SNP 89265 89265 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43028 SAMTools SNP 89374 89374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.013%2C0.026%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold43028 SAMTools SNP 89389 89389 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43028 SAMTools SNP 89578 89578 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43028 SAMTools SNP 89584 89584 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold43028 SAMTools SNP 89647 89647 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C14%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.011%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold43028 SAMTools SNP 90555 90555 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C38:41 scaffold43028 SAMTools SNP 90558 90558 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 90990 90990 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43028 SAMTools SNP 99247 99247 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold43028 SAMTools SNP 99298 99298 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 99868 99868 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 99901 99901 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 100793 100793 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold43028 SAMTools SNP 105072 105072 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43028 SAMTools SNP 105088 105088 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 105140 105140 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 111797 111797 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 111818 111818 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C206:99 scaffold43028 SAMTools SNP 112696 112696 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43028 SAMTools SNP 112898 112898 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 113131 113131 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold43028 SAMTools SNP 113161 113161 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43028 SAMTools SNP 114149 114149 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold43028 SAMTools SNP 114587 114587 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C36%2C0:68 scaffold43028 SAMTools SNP 114718 114718 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C30%2C0:57 scaffold43028 SAMTools SNP 115380 115380 60.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold43028 SAMTools SNP 118023 118023 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 118027 118027 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 118060 118060 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 118602 118602 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43028 SAMTools SNP 121469 121469 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold43028 SAMTools SNP 121611 121611 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold43028 SAMTools SNP 123079 123079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43028 SAMTools SNP 123146 123146 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 123310 123310 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.64%2C1.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C199:99 scaffold43028 SAMTools SNP 123399 123399 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C234:99 scaffold43028 SAMTools SNP 123415 123415 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43028 SAMTools SNP 123854 123854 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold43028 SAMTools SNP 124013 124013 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.47%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold43028 SAMTools SNP 124022 124022 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.14%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C136:98 scaffold43028 SAMTools SNP 124570 124570 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43028 SAMTools SNP 124575 124575 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43028 SAMTools SNP 124725 124725 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43028 SAMTools SNP 125701 125701 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold43028 SAMTools SNP 125740 125740 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 126431 126431 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 126729 126729 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43028 SAMTools SNP 127160 127160 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43028 SAMTools SNP 127199 127199 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold43028 SAMTools SNP 128259 128259 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C38%2C17%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D0.32%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold43028 SAMTools SNP 128307 128307 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C48%3BMQ%3D50%3BFQ%3D-200%3BPV4%3D0.35%2C0.071%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C0:99 scaffold43028 SAMTools SNP 128398 128398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43028 SAMTools SNP 130429 130429 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold43028 SAMTools SNP 131496 131496 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43028 SAMTools SNP 134520 134520 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C27%2C0:51 scaffold43028 SAMTools SNP 135125 135125 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C5%2C24%2C18%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.00022%2C1.2e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold43028 SAMTools SNP 135312 135312 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold43028 SAMTools SNP 135321 135321 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C24%2C0:45 scaffold43028 SAMTools SNP 135441 135441 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold43028 SAMTools SNP 135830 135830 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold43028 SAMTools SNP 136290 136290 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C203:76 scaffold43028 SAMTools SNP 136326 136326 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C98:80 scaffold43028 SAMTools SNP 136545 136545 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43028 SAMTools SNP 146463 146463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43028 SAMTools SNP 146565 146565 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43028 SAMTools SNP 146643 146643 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43028 SAMTools SNP 146670 146670 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43028 SAMTools SNP 151765 151765 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43028 SAMTools SNP 169594 169594 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold43028 SAMTools SNP 170590 170590 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 170596 170596 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43028 SAMTools SNP 172276 172276 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43028 SAMTools SNP 172965 172965 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43028 SAMTools SNP 175826 175826 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 176383 176383 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43028 SAMTools SNP 177829 177829 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43028 SAMTools SNP 178100 178100 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43028 SAMTools SNP 180787 180787 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43028 SAMTools SNP 181209 181209 59.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold43028 SAMTools SNP 181549 181549 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C7.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C146:97 scaffold43028 SAMTools SNP 181941 181941 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43028 SAMTools SNP 182304 182304 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43028 SAMTools SNP 184806 184806 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43028 SAMTools SNP 185292 185292 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C239:69 scaffold43028 SAMTools SNP 185763 185763 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C100:49 scaffold43028 SAMTools SNP 185804 185804 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43028 SAMTools SNP 190512 190512 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43028 SAMTools SNP 190514 190514 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.57%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43028 SAMTools SNP 209361 209361 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43028 SAMTools SNP 209674 209674 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43034 SAMTools SNP 87 87 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 145 145 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 216 216 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 13060 13060 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43034 SAMTools SNP 13077 13077 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43034 SAMTools SNP 14120 14120 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.42%2C0.053%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C224:69 scaffold43034 SAMTools SNP 14159 14159 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold43034 SAMTools SNP 14299 14299 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.28%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold43034 SAMTools SNP 14694 14694 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D0.43%2C1%2C0.059%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C198:34 scaffold43034 SAMTools SNP 14702 14702 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.47%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C37:40 scaffold43034 SAMTools SNP 14740 14740 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.067%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold43034 SAMTools SNP 19459 19459 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43034 SAMTools SNP 19964 19964 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 22184 22184 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43034 SAMTools SNP 23045 23045 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 29636 29636 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C9%2C0:16 scaffold43034 SAMTools SNP 29972 29972 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C46%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43034 SAMTools SNP 30563 30563 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43034 SAMTools SNP 30700 30700 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C105%2C0:99 scaffold43034 SAMTools SNP 30778 30778 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 32598 32598 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43034 SAMTools SNP 33058 33058 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold43034 SAMTools SNP 33189 33189 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.17%2C4.5e-09%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C156:30 scaffold43034 SAMTools SNP 34367 34367 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-05%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 34409 34409 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C12%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold43034 SAMTools SNP 35202 35202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C26%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0031%2C0.065%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold43034 SAMTools SNP 35613 35613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C56%2C11%3BMQ%3D50%3BFQ%3D-98%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C71%2C0:99 scaffold43034 SAMTools SNP 35882 35882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 35930 35930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C56%2C8%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 36071 36071 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 36496 36496 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C15%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43034 SAMTools SNP 36559 36559 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C38%2C9%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.0078%2C0.043%2C0.0092%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43034 SAMTools SNP 37191 37191 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C54%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 40133 40133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 40467 40467 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C68%2C30%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.4%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 44255 44255 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C78%2C1%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-16%2C1%2C1%2C7.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 44308 44308 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 44786 44786 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C92%2C116%2C86%3BMQ%3D50%3BFQ%3D151%3BPV4%3D6.8e-13%2C3e-160%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43034 SAMTools SNP 44906 44906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 46973 46973 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43034 SAMTools SNP 46981 46981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43034 SAMTools SNP 47053 47053 51.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold43034 SAMTools SNP 47107 47107 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43034 SAMTools SNP 47116 47116 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold43034 SAMTools SNP 47119 47119 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C20%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.13%2C0.0054%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43034 SAMTools SNP 47536 47536 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C1%2C35%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43034 SAMTools SNP 47814 47814 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C65%2C5%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.026%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43034 SAMTools SNP 47816 47816 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 48372 48372 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43034 SAMTools SNP 48375 48375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 48407 48407 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C8.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 48428 48428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43034 SAMTools SNP 50977 50977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43034 SAMTools SNP 50989 50989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43034 SAMTools SNP 52559 52559 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C227:99 scaffold43034 SAMTools SNP 52585 52585 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C222:96 scaffold43034 SAMTools SNP 52594 52594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43034 SAMTools SNP 52615 52615 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D6%2C3%2C97%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0016%2C0.31%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C35:38 scaffold43034 SAMTools SNP 53154 53154 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43034 SAMTools SNP 53157 53157 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C3%2C0:6 scaffold43034 SAMTools SNP 53181 53181 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C37%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 53700 53700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C2%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43034 SAMTools SNP 53771 53771 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold43034 SAMTools SNP 53914 53914 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold43034 SAMTools SNP 54700 54700 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C111%2C0:99 scaffold43034 SAMTools SNP 54754 54754 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C208%2C0:99 scaffold43034 SAMTools SNP 55066 55066 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold43034 SAMTools SNP 57228 57228 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C0.014%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C38:41 scaffold43034 SAMTools SNP 63018 63018 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 63033 63033 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 64789 64789 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.097%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43034 SAMTools SNP 65212 65212 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C24%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43034 SAMTools SNP 65263 65263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 65293 65293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43034 SAMTools SNP 65305 65305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 66182 66182 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C59%2C5%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 66242 66242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C52%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 66723 66723 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.8e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 67449 67449 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.34%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43034 SAMTools SNP 68019 68019 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C36%2C0:69 scaffold43034 SAMTools SNP 68081 68081 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C169%2C0:99 scaffold43034 SAMTools SNP 68728 68728 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C37%2C15%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D6.8e-06%2C1.6e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43034 SAMTools SNP 79568 79568 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold43034 SAMTools SNP 89563 89563 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43034 SAMTools SNP 89600 89600 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold43034 SAMTools SNP 89993 89993 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold43034 SAMTools SNP 90057 90057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.093%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold43034 SAMTools SNP 90536 90536 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.63%2C0.15%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43034 SAMTools SNP 90551 90551 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C63:66 scaffold43034 SAMTools SNP 90870 90870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43034 SAMTools SNP 91780 91780 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43034 SAMTools SNP 91819 91819 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold43034 SAMTools SNP 92231 92231 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C180:99 scaffold43034 SAMTools SNP 92451 92451 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C121:99 scaffold43034 SAMTools SNP 92623 92623 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.6%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold43034 SAMTools SNP 92665 92665 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold43034 SAMTools SNP 93264 93264 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43034 SAMTools SNP 94051 94051 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43034 SAMTools SNP 94069 94069 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43034 SAMTools SNP 94414 94414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43034 SAMTools SNP 95437 95437 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 95500 95500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C29%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43034 SAMTools SNP 100368 100368 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 100510 100510 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43034 SAMTools SNP 103783 103783 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43034 SAMTools SNP 104054 104054 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold43034 SAMTools SNP 104963 104963 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43034 SAMTools SNP 105002 105002 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C41%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43034 SAMTools SNP 105569 105569 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold43034 SAMTools SNP 105951 105951 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43034 SAMTools SNP 105979 105979 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43034 SAMTools SNP 106307 106307 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C9.3e-11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C58:61 scaffold43034 SAMTools SNP 106559 106559 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C28%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.023%2C1.3e-17%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43034 SAMTools SNP 106706 106706 37.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C21%2C0:39 scaffold43034 SAMTools SNP 106850 106850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 107794 107794 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C15%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.27%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold43034 SAMTools SNP 108820 108820 16.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold43034 SAMTools SNP 109702 109702 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold43034 SAMTools SNP 111344 111344 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43034 SAMTools SNP 112516 112516 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 113696 113696 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C4%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 113711 113711 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C13%2C24%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0069%2C6.8e-08%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43034 SAMTools SNP 113720 113720 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C10%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.04%2C3.4e-05%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold43034 SAMTools SNP 115502 115502 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 116121 116121 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C74%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C190:59 scaffold43034 SAMTools SNP 118049 118049 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43034 SAMTools SNP 118083 118083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43034 SAMTools SNP 118468 118468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43034 SAMTools SNP 118489 118489 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43034 SAMTools SNP 118566 118566 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C14%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43034 SAMTools SNP 118814 118814 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.15%2C0.31%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold43034 SAMTools SNP 121727 121727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 122002 122002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 122023 122023 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.23%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold43034 SAMTools SNP 123324 123324 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C7%2C35%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 123333 123333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43034 SAMTools SNP 124237 124237 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C47%2C25%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.077%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 124273 124273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C72%2C6%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 125237 125237 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 125262 125262 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.3%2C0.0033%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43034 SAMTools SNP 126616 126616 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43034 SAMTools SNP 130541 130541 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold43034 SAMTools SNP 131210 131210 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43034 SAMTools SNP 131500 131500 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C6.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C188:41 scaffold43034 SAMTools SNP 133403 133403 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43034 SAMTools SNP 133583 133583 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43034 SAMTools SNP 133625 133625 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43034 SAMTools SNP 133796 133796 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43034 SAMTools SNP 137293 137293 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43034 SAMTools SNP 137344 137344 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43034 SAMTools SNP 137684 137684 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43034 SAMTools SNP 138184 138184 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43034 SAMTools SNP 138952 138952 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0034%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C216:99 scaffold43034 SAMTools SNP 139212 139212 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold43034 SAMTools SNP 143578 143578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C5%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43034 SAMTools SNP 146477 146477 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C21%2C0:39 scaffold43034 SAMTools SNP 146568 146568 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.26%2C0.4%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43034 SAMTools SNP 146571 146571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43034 SAMTools SNP 146834 146834 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.4%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C192:99 scaffold43034 SAMTools SNP 148717 148717 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43034 SAMTools SNP 152001 152001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C11%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold43034 SAMTools SNP 152376 152376 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C25%2C15%2C25%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.066%2C8.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43034 SAMTools SNP 152739 152739 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C17%2C17%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.57%2C1e-43%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43034 SAMTools SNP 152855 152855 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C63%2C36%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C5.8e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 152997 152997 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0055%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43034 SAMTools SNP 153018 153018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold43034 SAMTools SNP 153648 153648 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.00019%2C5.2e-06%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43034 SAMTools SNP 153649 153649 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.004%2C0.00019%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43034 SAMTools SNP 154870 154870 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43034 SAMTools SNP 155513 155513 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 155570 155570 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C4.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43034 SAMTools SNP 161572 161572 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43034 SAMTools SNP 162080 162080 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43034 SAMTools SNP 162587 162587 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43034 SAMTools SNP 168709 168709 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43034 SAMTools SNP 181885 181885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43034 SAMTools SNP 187280 187280 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43034 SAMTools SNP 187345 187345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43034 SAMTools SNP 187364 187364 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C212:99 scaffold43034 SAMTools SNP 188201 188201 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.29%2C0.096%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43034 SAMTools SNP 188212 188212 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43034 SAMTools SNP 194782 194782 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43034 SAMTools SNP 194790 194790 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43034 SAMTools SNP 194926 194926 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.39%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold43034 SAMTools SNP 195974 195974 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43034 SAMTools SNP 195985 195985 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold43034 SAMTools SNP 196070 196070 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43034 SAMTools SNP 196081 196081 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43034 SAMTools SNP 196462 196462 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43034 SAMTools SNP 196561 196561 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43034 SAMTools SNP 196573 196573 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.25%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43034 SAMTools SNP 198128 198128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 24193 24193 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C27%2C0:51 scaffold43036 SAMTools SNP 24349 24349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7448%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D192%2C3%2C6714%2C121%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43036 SAMTools SNP 26913 26913 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2547%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D557%2C1325%2C459%2C205%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-71%2C1%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 27132 27132 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D945%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C441%2C27%2C452%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.78%2C0%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43036 SAMTools SNP 28683 28683 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43036 SAMTools SNP 32684 32684 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43036 SAMTools SNP 32723 32723 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0028%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.066%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold43036 SAMTools SNP 32726 32726 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.25%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43036 SAMTools SNP 33183 33183 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43036 SAMTools SNP 33234 33234 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43036 SAMTools SNP 33931 33931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43036 SAMTools SNP 34765 34765 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C50%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 34798 34798 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C29%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 34818 34818 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C16%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 34841 34841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43036 SAMTools SNP 35405 35405 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.63%2C0.32%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43036 SAMTools SNP 36047 36047 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C42%2C0:81 scaffold43036 SAMTools SNP 36122 36122 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43036 SAMTools SNP 36585 36585 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43036 SAMTools SNP 36688 36688 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43036 SAMTools SNP 36706 36706 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.066%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43036 SAMTools SNP 36739 36739 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold43036 SAMTools SNP 93515 93515 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43036 SAMTools SNP 99304 99304 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43036 SAMTools SNP 99316 99316 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43036 SAMTools SNP 99538 99538 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.34%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C20:23 scaffold43036 SAMTools SNP 100925 100925 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43036 SAMTools SNP 101041 101041 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43036 SAMTools SNP 102557 102557 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43036 SAMTools SNP 103246 103246 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 103610 103610 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43036 SAMTools SNP 103633 103633 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43036 SAMTools SNP 103673 103673 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00028%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43036 SAMTools SNP 103685 103685 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold43036 SAMTools SNP 104312 104312 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43036 SAMTools SNP 104315 104315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43036 SAMTools SNP 106472 106472 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43036 SAMTools SNP 106887 106887 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43036 SAMTools SNP 108438 108438 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43036 SAMTools SNP 108874 108874 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43036 SAMTools SNP 108933 108933 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.052%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43036 SAMTools SNP 111147 111147 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43036 SAMTools SNP 111422 111422 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.02%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C80:41 scaffold43036 SAMTools SNP 111458 111458 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C14%2C2%3BMQ%3D50%3BFQ%3D45.8%3BPV4%3D0.097%2C8.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C86:76 scaffold43036 SAMTools SNP 111578 111578 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D1%2C0.023%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C41:41 scaffold43036 SAMTools SNP 111734 111734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold43036 SAMTools SNP 112171 112171 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold43036 SAMTools SNP 115363 115363 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold43036 SAMTools SNP 115472 115472 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C244:41 scaffold43036 SAMTools SNP 115743 115743 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43036 SAMTools SNP 116278 116278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C1%2C54%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43036 SAMTools SNP 118169 118169 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C36%2C0:69 scaffold43036 SAMTools SNP 121931 121931 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.08%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C48:51 scaffold43036 SAMTools SNP 124914 124914 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 124926 124926 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43036 SAMTools SNP 124958 124958 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.54%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43036 SAMTools SNP 125951 125951 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 129184 129184 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43036 SAMTools SNP 137568 137568 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C32%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C26:29 scaffold43036 SAMTools SNP 137578 137578 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.0079%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold43036 SAMTools SNP 141821 141821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43036 SAMTools SNP 141854 141854 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold43036 SAMTools SNP 148280 148280 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 154442 154442 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 154507 154507 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43036 SAMTools SNP 154510 154510 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43036 SAMTools SNP 155816 155816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 157900 157900 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.0039%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 158015 158015 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43036 SAMTools SNP 158066 158066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold43036 SAMTools SNP 165333 165333 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43036 SAMTools SNP 176136 176136 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 186950 186950 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C3%2C12%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.22%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold43036 SAMTools SNP 190543 190543 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43036 SAMTools SNP 193283 193283 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43036 SAMTools SNP 193289 193289 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43036 SAMTools SNP 193328 193328 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold43036 SAMTools SNP 193334 193334 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold43036 SAMTools SNP 195987 195987 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold43036 SAMTools SNP 198421 198421 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.36%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold43036 SAMTools SNP 198445 198445 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43036 SAMTools SNP 198478 198478 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D42.3%3BPV4%3D0.43%2C3.8e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C71:72 scaffold43036 SAMTools SNP 198514 198514 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.49%2C7.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C154:58 scaffold43036 SAMTools SNP 198604 198604 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C20:23 scaffold43036 SAMTools SNP 199013 199013 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43036 SAMTools SNP 199073 199073 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43036 SAMTools SNP 199256 199256 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43036 SAMTools SNP 199671 199671 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43036 SAMTools SNP 200197 200197 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43036 SAMTools SNP 200220 200220 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 2250 2250 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43038 SAMTools SNP 3686 3686 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold43038 SAMTools SNP 4570 4570 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold43038 SAMTools SNP 4575 4575 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43038 SAMTools SNP 5191 5191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43038 SAMTools SNP 6976 6976 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C249:99 scaffold43038 SAMTools SNP 7012 7012 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.43%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C236:99 scaffold43038 SAMTools SNP 8218 8218 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold43038 SAMTools SNP 13317 13317 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 14067 14067 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D26%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold43038 SAMTools SNP 14363 14363 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 14729 14729 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43038 SAMTools SNP 14758 14758 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.07%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold43038 SAMTools SNP 15256 15256 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold43038 SAMTools SNP 15315 15315 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold43038 SAMTools SNP 15446 15446 23.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C14:17 scaffold43038 SAMTools SNP 21702 21702 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43038 SAMTools SNP 21830 21830 94.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C15%2C0:27 scaffold43038 SAMTools SNP 22030 22030 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 22400 22400 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43038 SAMTools SNP 22410 22410 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43038 SAMTools SNP 22647 22647 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43038 SAMTools SNP 23781 23781 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.5%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C221:90 scaffold43038 SAMTools SNP 25024 25024 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold43038 SAMTools SNP 25025 25025 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43038 SAMTools SNP 31620 31620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 32016 32016 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43038 SAMTools SNP 32616 32616 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 32647 32647 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 35586 35586 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 35609 35609 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 68318 68318 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold43038 SAMTools SNP 68348 68348 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 68399 68399 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 73440 73440 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43038 SAMTools SNP 73720 73720 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold43038 SAMTools SNP 75523 75523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.37%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 75544 75544 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 86931 86931 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.00022%2C1.5e-06%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43038 SAMTools SNP 89814 89814 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43038 SAMTools SNP 89859 89859 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43038 SAMTools SNP 89862 89862 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.52%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43038 SAMTools SNP 90243 90243 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.11%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43038 SAMTools SNP 90246 90246 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.11%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43038 SAMTools SNP 93944 93944 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.089%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43038 SAMTools SNP 93954 93954 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C228:99 scaffold43038 SAMTools SNP 95030 95030 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43038 SAMTools SNP 95974 95974 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43038 SAMTools SNP 96015 96015 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 104423 104423 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 104995 104995 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 105446 105446 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43038 SAMTools SNP 106548 106548 50.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold43038 SAMTools SNP 106587 106587 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C38:41 scaffold43038 SAMTools SNP 106808 106808 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 106892 106892 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 106907 106907 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 107485 107485 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43038 SAMTools SNP 107589 107589 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43038 SAMTools SNP 108071 108071 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 110273 110273 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold43038 SAMTools SNP 110693 110693 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C21%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43038 SAMTools SNP 110717 110717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43038 SAMTools SNP 110744 110744 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C246:99 scaffold43038 SAMTools SNP 113786 113786 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43038 SAMTools SNP 114241 114241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 116650 116650 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.25%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43038 SAMTools SNP 118735 118735 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43038 SAMTools SNP 118825 118825 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C74%2C0%2C59%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.038%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43038 SAMTools SNP 121049 121049 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.68%2C7.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43038 SAMTools SNP 123560 123560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold43038 SAMTools SNP 123643 123643 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold43038 SAMTools SNP 123644 123644 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold43038 SAMTools SNP 128811 128811 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43038 SAMTools SNP 132493 132493 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43038 SAMTools SNP 133747 133747 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C12%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C238:99 scaffold43038 SAMTools SNP 133891 133891 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C45%2C0:87 scaffold43038 SAMTools SNP 134089 134089 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C8%2C20%3BMQ%3D45%3BFQ%3D210%3BPV4%3D0.18%2C0.2%2C0.063%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C244:99 scaffold43038 SAMTools SNP 136275 136275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.62%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold43038 SAMTools SNP 136735 136735 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.028%2C1.5e-06%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C241:99 scaffold43038 SAMTools SNP 140472 140472 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C0%2C16%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.088%2C5.3e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43038 SAMTools SNP 140913 140913 45.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold43038 SAMTools SNP 141502 141502 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43038 SAMTools SNP 141688 141688 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C1%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43038 SAMTools SNP 141709 141709 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43038 SAMTools SNP 141741 141741 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1e-06%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C236:49 scaffold43038 SAMTools SNP 144717 144717 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold43038 SAMTools SNP 144777 144777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43038 SAMTools SNP 146815 146815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 146829 146829 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C36%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43038 SAMTools SNP 146861 146861 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43038 SAMTools SNP 147892 147892 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0052%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C251:74 scaffold43038 SAMTools SNP 148290 148290 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C60%2C0:99 scaffold43038 SAMTools SNP 149019 149019 46.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold43038 SAMTools SNP 155909 155909 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 155921 155921 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43038 SAMTools SNP 156350 156350 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 156884 156884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43038 SAMTools SNP 156925 156925 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43038 SAMTools SNP 157106 157106 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold43038 SAMTools SNP 157457 157457 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold43038 SAMTools SNP 158424 158424 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43038 SAMTools SNP 158436 158436 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43038 SAMTools SNP 158599 158599 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 162359 162359 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C12%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C2.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43038 SAMTools SNP 162686 162686 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.51%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43038 SAMTools SNP 163031 163031 77.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold43038 SAMTools SNP 163104 163104 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C42%2C0:81 scaffold43038 SAMTools SNP 163197 163197 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C54%2C0:99 scaffold43038 SAMTools SNP 163352 163352 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 164758 164758 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.1%2C0.16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43038 SAMTools SNP 164872 164872 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C38:41 scaffold43038 SAMTools SNP 164878 164878 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43038 SAMTools SNP 165413 165413 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 165533 165533 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43038 SAMTools SNP 165874 165874 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43038 SAMTools SNP 165892 165892 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 165973 165973 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C36%2C0:69 scaffold43038 SAMTools SNP 166012 166012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43038 SAMTools SNP 166021 166021 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43038 SAMTools SNP 166585 166585 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C157:28 scaffold43038 SAMTools SNP 166651 166651 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C2.1e-09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C248:81 scaffold43038 SAMTools SNP 166687 166687 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43038 SAMTools SNP 166964 166964 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43038 SAMTools SNP 167030 167030 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43038 SAMTools SNP 167102 167102 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.42%2C4.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43038 SAMTools SNP 167109 167109 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.9e-11%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43038 SAMTools SNP 167561 167561 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.15%2C5.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold43038 SAMTools SNP 167672 167672 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C1%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43038 SAMTools SNP 167678 167678 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 167689 167689 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43038 SAMTools SNP 168022 168022 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43038 SAMTools SNP 168324 168324 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold43038 SAMTools SNP 169920 169920 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold43038 SAMTools SNP 169959 169959 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold43038 SAMTools SNP 169962 169962 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold43038 SAMTools SNP 171228 171228 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43038 SAMTools SNP 171231 171231 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43038 SAMTools SNP 171420 171420 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43038 SAMTools SNP 171441 171441 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43038 SAMTools SNP 172609 172609 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43038 SAMTools SNP 172624 172624 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43038 SAMTools SNP 172693 172693 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43038 SAMTools SNP 173175 173175 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.26%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43038 SAMTools SNP 173220 173220 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold43038 SAMTools SNP 174109 174109 17.1 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C23%2C20%2C47%2C0%2C44:6 scaffold43038 SAMTools SNP 174277 174277 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43054 SAMTools SNP 41738 41738 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43054 SAMTools SNP 49165 49165 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43054 SAMTools SNP 63474 63474 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43054 SAMTools SNP 63924 63924 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43054 SAMTools SNP 71825 71825 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43054 SAMTools SNP 73597 73597 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43054 SAMTools SNP 73598 73598 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43054 SAMTools SNP 79940 79940 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43054 SAMTools SNP 90685 90685 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0012%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43054 SAMTools SNP 115788 115788 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43054 SAMTools SNP 115797 115797 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43054 SAMTools SNP 120401 120401 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43054 SAMTools SNP 120726 120726 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43054 SAMTools SNP 121037 121037 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0069%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43054 SAMTools SNP 121051 121051 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold43054 SAMTools SNP 125473 125473 68.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold43054 SAMTools SNP 137431 137431 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43054 SAMTools SNP 138335 138335 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43054 SAMTools SNP 138811 138811 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.54%2C0.025%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43054 SAMTools SNP 138815 138815 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.22%2C0.2%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold43054 SAMTools SNP 138989 138989 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43054 SAMTools SNP 139947 139947 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold43054 SAMTools SNP 154440 154440 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43054 SAMTools SNP 154965 154965 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.074%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C221:99 scaffold43054 SAMTools SNP 155070 155070 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43054 SAMTools SNP 155253 155253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43054 SAMTools SNP 155807 155807 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43054 SAMTools SNP 156134 156134 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C4%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C0.044%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43054 SAMTools SNP 156141 156141 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43054 SAMTools SNP 156166 156166 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold43054 SAMTools SNP 156524 156524 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C26:29 scaffold43054 SAMTools SNP 160132 160132 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C36%2C0:69 scaffold43054 SAMTools SNP 160379 160379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43054 SAMTools SNP 160388 160388 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43054 SAMTools SNP 162737 162737 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43054 SAMTools SNP 162772 162772 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43054 SAMTools SNP 174500 174500 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold43054 SAMTools SNP 174541 174541 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0079%2C1.9e-09%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C132:53 scaffold43054 SAMTools SNP 174632 174632 39.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold43054 SAMTools SNP 175916 175916 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43054 SAMTools SNP 176092 176092 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold43054 SAMTools SNP 182264 182264 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43054 SAMTools SNP 196711 196711 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41.9%3BPV4%3D0.4%2C0%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C85:72 scaffold43054 SAMTools SNP 197340 197340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43054 SAMTools SNP 200540 200540 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C93%2C34%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43054 SAMTools SNP 200596 200596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C97%2C107%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43054 SAMTools SNP 201106 201106 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C55%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold43054 SAMTools SNP 202239 202239 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C94%2C0%2C22%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.074%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43054 SAMTools SNP 202746 202746 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1700%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C915%2C0%2C758%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43054 SAMTools SNP 202782 202782 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C97%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C153:99 scaffold43054 SAMTools SNP 211318 211318 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43064 SAMTools SNP 1588 1588 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 1621 1621 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 2234 2234 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 10211 10211 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43064 SAMTools SNP 11165 11165 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.5%2C0.056%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C201:34 scaffold43064 SAMTools SNP 11174 11174 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43064 SAMTools SNP 11593 11593 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C231:99 scaffold43064 SAMTools SNP 11632 11632 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C211:99 scaffold43064 SAMTools SNP 12636 12636 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43064 SAMTools SNP 13457 13457 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 13904 13904 92.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold43064 SAMTools SNP 13908 13908 92.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold43064 SAMTools SNP 14313 14313 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold43064 SAMTools SNP 14323 14323 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold43064 SAMTools SNP 14942 14942 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43064 SAMTools SNP 14959 14959 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43064 SAMTools SNP 15155 15155 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43064 SAMTools SNP 15846 15846 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43064 SAMTools SNP 16283 16283 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43064 SAMTools SNP 16285 16285 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43064 SAMTools SNP 16505 16505 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43064 SAMTools SNP 16540 16540 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43064 SAMTools SNP 22639 22639 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43064 SAMTools SNP 22837 22837 54.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold43064 SAMTools SNP 23139 23139 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43064 SAMTools SNP 30425 30425 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43064 SAMTools SNP 30437 30437 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43064 SAMTools SNP 30857 30857 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 31598 31598 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 31602 31602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 31936 31936 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 31941 31941 52.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold43064 SAMTools SNP 33753 33753 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 34111 34111 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 34117 34117 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 57655 57655 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43064 SAMTools SNP 57983 57983 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 58797 58797 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 58975 58975 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43064 SAMTools SNP 59190 59190 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.29%2C4.4e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold43064 SAMTools SNP 59213 59213 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold43064 SAMTools SNP 59580 59580 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43064 SAMTools SNP 60440 60440 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.063%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43064 SAMTools SNP 62305 62305 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43064 SAMTools SNP 62349 62349 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43064 SAMTools SNP 67842 67842 140 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43064 SAMTools SNP 67949 67949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43064 SAMTools SNP 68439 68439 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43064 SAMTools SNP 70094 70094 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.21%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C79:82 scaffold43064 SAMTools SNP 70107 70107 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C35:38 scaffold43064 SAMTools SNP 85841 85841 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43064 SAMTools SNP 85880 85880 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43064 SAMTools SNP 92782 92782 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 93187 93187 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 93684 93684 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43064 SAMTools SNP 105133 105133 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 105173 105173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 133175 133175 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43064 SAMTools SNP 135444 135444 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43064 SAMTools SNP 137039 137039 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43064 SAMTools SNP 137129 137129 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold43064 SAMTools SNP 141326 141326 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 146264 146264 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 146922 146922 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 146981 146981 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 147744 147744 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43064 SAMTools SNP 147781 147781 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43064 SAMTools SNP 147999 147999 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 165125 165125 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43064 SAMTools SNP 171334 171334 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43064 SAMTools SNP 171820 171820 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43064 SAMTools SNP 171873 171873 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold43064 SAMTools SNP 178687 178687 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43064 SAMTools SNP 179386 179386 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C60%2C0:99 scaffold43064 SAMTools SNP 179439 179439 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43064 SAMTools SNP 180211 180211 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43064 SAMTools SNP 180376 180376 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43066 SAMTools SNP 5047 5047 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43066 SAMTools SNP 7161 7161 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43066 SAMTools SNP 7190 7190 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43066 SAMTools SNP 7535 7535 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C149:99 scaffold43066 SAMTools SNP 7539 7539 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C63:66 scaffold43066 SAMTools SNP 7734 7734 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43066 SAMTools SNP 16353 16353 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 16544 16544 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 17183 17183 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 17192 17192 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 17495 17495 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43066 SAMTools SNP 18204 18204 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43066 SAMTools SNP 18222 18222 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43066 SAMTools SNP 22344 22344 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 25861 25861 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43066 SAMTools SNP 29175 29175 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43066 SAMTools SNP 29852 29852 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 30130 30130 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 30924 30924 13.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43066 SAMTools SNP 30953 30953 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43066 SAMTools SNP 32383 32383 37.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold43066 SAMTools SNP 32452 32452 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold43066 SAMTools SNP 32637 32637 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 43618 43618 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 44306 44306 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 44482 44482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C7.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 44805 44805 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.045%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 44844 44844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43066 SAMTools SNP 44936 44936 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 45326 45326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43066 SAMTools SNP 46088 46088 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43066 SAMTools SNP 46430 46430 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43066 SAMTools SNP 48692 48692 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 49119 49119 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold43066 SAMTools SNP 49334 49334 29.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold43066 SAMTools SNP 49375 49375 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 49382 49382 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 100766 100766 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold43066 SAMTools SNP 101505 101505 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C21%2C0:39 scaffold43066 SAMTools SNP 101772 101772 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43066 SAMTools SNP 101833 101833 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43066 SAMTools SNP 102294 102294 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43066 SAMTools SNP 102469 102469 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43066 SAMTools SNP 102714 102714 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43066 SAMTools SNP 104504 104504 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43066 SAMTools SNP 108469 108469 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43066 SAMTools SNP 108847 108847 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43066 SAMTools SNP 109066 109066 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43066 SAMTools SNP 109096 109096 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43066 SAMTools SNP 109237 109237 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43066 SAMTools SNP 131211 131211 40 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C20%2C11%2C69%2C0%2C66:16 scaffold43066 SAMTools SNP 132936 132936 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43066 SAMTools SNP 132946 132946 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43066 SAMTools SNP 146386 146386 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C6.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C211:62 scaffold43066 SAMTools SNP 146425 146425 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C99%2C0:99 scaffold43066 SAMTools SNP 146799 146799 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C21%2C0:39 scaffold43066 SAMTools SNP 147862 147862 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C100%2C16%2C86%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.082%2C2.1e-174%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold43066 SAMTools SNP 147964 147964 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold43066 SAMTools SNP 147974 147974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43066 SAMTools SNP 148570 148570 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43066 SAMTools SNP 150114 150114 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43066 SAMTools SNP 150406 150406 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C29%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.54%2C0.39%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold43066 SAMTools SNP 150415 150415 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43066 SAMTools SNP 150435 150435 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.07%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 153555 153555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 153962 153962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C14%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0022%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold43066 SAMTools SNP 154942 154942 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43066 SAMTools SNP 154947 154947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43066 SAMTools SNP 155262 155262 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold43066 SAMTools SNP 156122 156122 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43066 SAMTools SNP 156128 156128 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C0.33%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43066 SAMTools SNP 156503 156503 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C7%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43066 SAMTools SNP 157965 157965 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 158394 158394 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold43066 SAMTools SNP 158415 158415 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43066 SAMTools SNP 158829 158829 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43066 SAMTools SNP 158847 158847 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43066 SAMTools SNP 159293 159293 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43066 SAMTools SNP 159981 159981 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43066 SAMTools SNP 160660 160660 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43066 SAMTools SNP 162272 162272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43066 SAMTools SNP 162637 162637 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43066 SAMTools SNP 162716 162716 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C13%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43066 SAMTools SNP 163080 163080 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C57%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.68%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold43066 SAMTools SNP 163580 163580 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C2%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43066 SAMTools SNP 163622 163622 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C74%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43066 SAMTools SNP 163957 163957 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43066 SAMTools SNP 163975 163975 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43066 SAMTools SNP 164168 164168 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold43066 SAMTools SNP 164971 164971 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 187804 187804 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43066 SAMTools SNP 188074 188074 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 195954 195954 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43066 SAMTools SNP 196291 196291 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43066 SAMTools SNP 196577 196577 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43066 SAMTools SNP 196640 196640 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43066 SAMTools SNP 196943 196943 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C230:77 scaffold43066 SAMTools SNP 196994 196994 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43066 SAMTools SNP 197009 197009 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 197802 197802 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43066 SAMTools SNP 198305 198305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C67%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43066 SAMTools SNP 198731 198731 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43066 SAMTools SNP 198791 198791 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43066 SAMTools SNP 198863 198863 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43066 SAMTools SNP 199026 199026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43066 SAMTools SNP 199057 199057 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43066 SAMTools SNP 199330 199330 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43066 SAMTools SNP 199576 199576 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C15%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.17%2C0.15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43066 SAMTools SNP 199793 199793 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43066 SAMTools SNP 200026 200026 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43066 SAMTools SNP 200068 200068 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43066 SAMTools SNP 201424 201424 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 203227 203227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 203402 203402 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43066 SAMTools SNP 203417 203417 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C0%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.57%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold43066 SAMTools SNP 204193 204193 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C213:99 scaffold43066 SAMTools SNP 204220 204220 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold43066 SAMTools SNP 204805 204805 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 204808 204808 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 205427 205427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43066 SAMTools SNP 205436 205436 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold43066 SAMTools SNP 205457 205457 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43066 SAMTools SNP 205469 205469 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold43066 SAMTools SNP 205608 205608 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold43066 SAMTools SNP 205653 205653 134 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C86%2C74%2C166%2C0%2C160:21 scaffold43066 SAMTools SNP 205701 205701 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold43066 SAMTools SNP 212100 212100 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold43066 SAMTools SNP 212449 212449 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.13%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C174:99 scaffold43066 SAMTools SNP 213232 213232 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.31%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43066 SAMTools SNP 213304 213304 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43066 SAMTools SNP 213340 213340 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C12%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold43072 SAMTools SNP 4118 4118 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 4149 4149 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 4759 4759 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43072 SAMTools SNP 5371 5371 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 5821 5821 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43072 SAMTools SNP 5893 5893 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43072 SAMTools SNP 6265 6265 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43072 SAMTools SNP 6294 6294 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43072 SAMTools SNP 6295 6295 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43072 SAMTools SNP 7757 7757 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 9004 9004 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 9007 9007 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 10619 10619 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43072 SAMTools SNP 10794 10794 66.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C6%2C0:10 scaffold43072 SAMTools SNP 10802 10802 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43072 SAMTools SNP 10919 10919 35.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43072 SAMTools SNP 11060 11060 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43072 SAMTools SNP 11334 11334 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold43072 SAMTools SNP 11605 11605 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C162:74 scaffold43072 SAMTools SNP 12075 12075 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 12105 12105 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 12478 12478 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43072 SAMTools SNP 14919 14919 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43072 SAMTools SNP 15331 15331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43072 SAMTools SNP 15369 15369 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.33%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43072 SAMTools SNP 15523 15523 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43072 SAMTools SNP 15727 15727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C64%2C163%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 16157 16157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C59%2C102%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C0.0012%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 16211 16211 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C104%2C10%2C173%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1e-05%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 17478 17478 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C173%2C0%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 18379 18379 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.11%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43072 SAMTools SNP 19514 19514 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C3.5e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C26:29 scaffold43072 SAMTools SNP 20577 20577 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold43072 SAMTools SNP 21901 21901 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C15%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.71%2C2.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43072 SAMTools SNP 21937 21937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C30%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43072 SAMTools SNP 22389 22389 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C35%3BMQ%3D50%3BFQ%3D81%3BPV4%3D3.4e-06%2C2.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C193:99 scaffold43072 SAMTools SNP 22790 22790 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.35%2C6.2e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C248:36 scaffold43072 SAMTools SNP 22889 22889 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43072 SAMTools SNP 22949 22949 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 23240 23240 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43072 SAMTools SNP 24027 24027 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 25005 25005 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43072 SAMTools SNP 25259 25259 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43072 SAMTools SNP 25898 25898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 26820 26820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43072 SAMTools SNP 26826 26826 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 26973 26973 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43072 SAMTools SNP 29111 29111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 29392 29392 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43072 SAMTools SNP 29394 29394 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43072 SAMTools SNP 29703 29703 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C25%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 31657 31657 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 31675 31675 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 31983 31983 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C8%2C0%3BMQ%3D49%3BFQ%3D38%3BPV4%3D0.0056%2C1.4e-05%2C0.015%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43072 SAMTools SNP 34069 34069 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.29%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 35846 35846 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 36109 36109 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 36915 36915 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43072 SAMTools SNP 37179 37179 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43072 SAMTools SNP 37397 37397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 37538 37538 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.07%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C200:99 scaffold43072 SAMTools SNP 37652 37652 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold43072 SAMTools SNP 38049 38049 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 39700 39700 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43072 SAMTools SNP 39961 39961 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.55%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43072 SAMTools SNP 42461 42461 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.2%2C4.4e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43072 SAMTools SNP 42469 42469 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C12%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.0076%2C4.9e-05%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43072 SAMTools SNP 45671 45671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 62061 62061 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C43%2C13%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.35%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 62728 62728 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0017%2C0.47%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43072 SAMTools SNP 63149 63149 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.13%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C62:65 scaffold43072 SAMTools SNP 63265 63265 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43072 SAMTools SNP 64691 64691 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C3%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43072 SAMTools SNP 64715 64715 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43072 SAMTools SNP 65174 65174 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43072 SAMTools SNP 65175 65175 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C0.28%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43072 SAMTools SNP 65625 65625 31.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold43072 SAMTools SNP 65805 65805 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C17%2C66%2C17%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0081%2C1.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold43072 SAMTools SNP 66077 66077 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C97%2C0%2C185%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold43072 SAMTools SNP 66091 66091 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C186%2C0%2C86%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold43072 SAMTools SNP 66796 66796 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C155:99 scaffold43072 SAMTools SNP 75801 75801 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43072 SAMTools SNP 75804 75804 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43072 SAMTools SNP 80263 80263 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43072 SAMTools SNP 88484 88484 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43072 SAMTools SNP 88514 88514 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C130:77 scaffold43072 SAMTools SNP 88562 88562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 88604 88604 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-05%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43072 SAMTools SNP 88988 88988 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00091%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43072 SAMTools SNP 89007 89007 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43072 SAMTools SNP 89021 89021 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C78:81 scaffold43072 SAMTools SNP 89242 89242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C32%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43072 SAMTools SNP 89325 89325 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43072 SAMTools SNP 90632 90632 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-7.01%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C21:25 scaffold43072 SAMTools SNP 93240 93240 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 97942 97942 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43072 SAMTools SNP 100672 100672 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43072 SAMTools SNP 100685 100685 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold43072 SAMTools SNP 100765 100765 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43072 SAMTools SNP 102745 102745 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C71:74 scaffold43072 SAMTools SNP 103020 103020 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43072 SAMTools SNP 109954 109954 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C78%2C0:99 scaffold43072 SAMTools SNP 110108 110108 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C63%2C0:99 scaffold43072 SAMTools SNP 111863 111863 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.14%2C1.9e-06%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C215:69 scaffold43072 SAMTools SNP 111962 111962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C16%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43072 SAMTools SNP 112085 112085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43072 SAMTools SNP 113061 113061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43072 SAMTools SNP 113953 113953 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.61%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold43072 SAMTools SNP 114043 114043 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43072 SAMTools SNP 114049 114049 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C11%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C211:99 scaffold43072 SAMTools SNP 114142 114142 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.53%2C0.02%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43072 SAMTools SNP 116230 116230 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C50%2C5%2C27%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.43%2C1.7e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43072 SAMTools SNP 116368 116368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C26%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold43072 SAMTools SNP 116918 116918 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 119975 119975 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 128789 128789 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43072 SAMTools SNP 129986 129986 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold43072 SAMTools SNP 135287 135287 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43072 SAMTools SNP 135294 135294 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold43072 SAMTools SNP 135338 135338 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 146681 146681 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 147677 147677 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 147983 147983 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.3%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43072 SAMTools SNP 147987 147987 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.3%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold43072 SAMTools SNP 149230 149230 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.04%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 149402 149402 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C2.8e-23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43072 SAMTools SNP 149485 149485 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C8%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.39%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43072 SAMTools SNP 152990 152990 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43072 SAMTools SNP 153005 153005 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.013%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43072 SAMTools SNP 154634 154634 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.0044%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43072 SAMTools SNP 154700 154700 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 154758 154758 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C34%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43072 SAMTools SNP 155070 155070 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43072 SAMTools SNP 155732 155732 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 155750 155750 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 157501 157501 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.37%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43072 SAMTools SNP 157643 157643 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43072 SAMTools SNP 157887 157887 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43072 SAMTools SNP 158001 158001 124 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C47%2C32%2C150%2C0%2C147:27 scaffold43072 SAMTools SNP 158331 158331 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 158953 158953 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43072 SAMTools SNP 159001 159001 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43072 SAMTools SNP 159816 159816 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43072 SAMTools SNP 159823 159823 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43072 SAMTools SNP 159913 159913 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 160244 160244 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 160865 160865 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43072 SAMTools SNP 161072 161072 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43072 SAMTools SNP 161602 161602 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 161606 161606 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 164810 164810 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43072 SAMTools SNP 164954 164954 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43072 SAMTools SNP 169346 169346 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C35:38 scaffold43072 SAMTools SNP 170215 170215 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold43072 SAMTools SNP 170234 170234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43072 SAMTools SNP 170751 170751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43072 SAMTools SNP 170790 170790 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold43072 SAMTools SNP 171545 171545 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43072 SAMTools SNP 171558 171558 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43072 SAMTools SNP 174591 174591 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43072 SAMTools SNP 175888 175888 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43072 SAMTools SNP 176167 176167 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold43072 SAMTools SNP 177590 177590 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43072 SAMTools SNP 178785 178785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 181092 181092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 181140 181140 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold43072 SAMTools SNP 182920 182920 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0003%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D4%2C1%2C65%2C1%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.14%2C0.26%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C3:6 scaffold43072 SAMTools SNP 183525 183525 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43072 SAMTools SNP 186596 186596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43072 SAMTools SNP 187655 187655 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.56%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43072 SAMTools SNP 187658 187658 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.22%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43072 SAMTools SNP 188099 188099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C3%2C75%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.41%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold43072 SAMTools SNP 188261 188261 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C72%2C1%2C22%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold43072 SAMTools SNP 188298 188298 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0034%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43072 SAMTools SNP 188362 188362 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.12%2C0.00096%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43072 SAMTools SNP 188649 188649 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43072 SAMTools SNP 189544 189544 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43072 SAMTools SNP 195044 195044 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43072 SAMTools SNP 196153 196153 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.68%2C0.037%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43072 SAMTools SNP 196158 196158 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C0%2C14%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.011%2C5.9e-09%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43072 SAMTools SNP 197099 197099 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 197618 197618 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43072 SAMTools SNP 197654 197654 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 197687 197687 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43072 SAMTools SNP 197753 197753 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C9%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0049%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43072 SAMTools SNP 198059 198059 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43072 SAMTools SNP 198095 198095 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.43%2C8.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43072 SAMTools SNP 198188 198188 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43072 SAMTools SNP 198505 198505 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43072 SAMTools SNP 198514 198514 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43072 SAMTools SNP 198565 198565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.43%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold43072 SAMTools SNP 198789 198789 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43072 SAMTools SNP 198848 198848 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.018%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43072 SAMTools SNP 198860 198860 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C23%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43072 SAMTools SNP 199503 199503 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.0069%2C1%2C8.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C174:64 scaffold43072 SAMTools SNP 206523 206523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 206535 206535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43072 SAMTools SNP 210208 210208 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43072 SAMTools SNP 210252 210252 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 213331 213331 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43072 SAMTools SNP 213378 213378 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold43072 SAMTools SNP 213764 213764 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43072 SAMTools SNP 213798 213798 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43072 SAMTools SNP 215263 215263 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 1763 1763 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 1793 1793 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43074 SAMTools SNP 1856 1856 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 1919 1919 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43074 SAMTools SNP 3342 3342 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 9989 9989 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 12165 12165 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 12233 12233 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 12248 12248 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 15259 15259 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43074 SAMTools SNP 15318 15318 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43074 SAMTools SNP 15889 15889 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.01%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C30:28 scaffold43074 SAMTools SNP 15902 15902 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 20383 20383 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 20386 20386 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 20689 20689 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold43074 SAMTools SNP 20712 20712 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43074 SAMTools SNP 20826 20826 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43074 SAMTools SNP 21210 21210 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 21333 21333 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43074 SAMTools SNP 21897 21897 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold43074 SAMTools SNP 34604 34604 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 34905 34905 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 36207 36207 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 42928 42928 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C15%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.059%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold43074 SAMTools SNP 43629 43629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1442%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D535%2C231%2C459%2C165%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C7e-310%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43074 SAMTools SNP 43728 43728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D929%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C312%2C30%2C122%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.37%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43074 SAMTools SNP 44667 44667 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D754%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D217%2C425%2C85%2C24%3BMQ%3D50%3BFQ%3D125%3BPV4%3D5e-18%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43074 SAMTools SNP 44674 44674 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D797%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C442%2C83%2C33%3BMQ%3D50%3BFQ%3D62%3BPV4%3D6.1e-14%2C1%2C1%2C2.4e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43074 SAMTools SNP 45553 45553 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D797%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C228%2C430%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43074 SAMTools SNP 45628 45628 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D503%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C56%3BMQ%3D50%3BFQ%3D-190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43074 SAMTools SNP 45667 45667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C304%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43074 SAMTools SNP 45670 45670 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C244%2C0%2C70%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.079%2C0.12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43074 SAMTools SNP 46063 46063 67.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C12%2C0:21 scaffold43074 SAMTools SNP 46151 46151 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C228:36 scaffold43074 SAMTools SNP 69521 69521 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43074 SAMTools SNP 69591 69591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43074 SAMTools SNP 71724 71724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43074 SAMTools SNP 71778 71778 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43074 SAMTools SNP 77131 77131 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43074 SAMTools SNP 79570 79570 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold43074 SAMTools SNP 81845 81845 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.0034%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C217:81 scaffold43074 SAMTools SNP 85389 85389 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43074 SAMTools SNP 85442 85442 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 103182 103182 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 103189 103189 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 116903 116903 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43074 SAMTools SNP 144328 144328 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.1%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43074 SAMTools SNP 144586 144586 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43074 SAMTools SNP 149612 149612 44.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold43074 SAMTools SNP 178483 178483 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold43074 SAMTools SNP 178543 178543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43074 SAMTools SNP 178831 178831 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43074 SAMTools SNP 179621 179621 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43074 SAMTools SNP 179651 179651 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43074 SAMTools SNP 179666 179666 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43074 SAMTools SNP 179717 179717 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.35%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43074 SAMTools SNP 180156 180156 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.02%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold43074 SAMTools SNP 180834 180834 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43074 SAMTools SNP 180915 180915 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold43074 SAMTools SNP 180921 180921 65.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold43074 SAMTools SNP 180984 180984 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold43074 SAMTools SNP 197462 197462 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 198616 198616 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 199248 199248 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43074 SAMTools SNP 206820 206820 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold43074 SAMTools SNP 206838 206838 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43074 SAMTools SNP 207407 207407 17.1 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold43074 SAMTools SNP 208131 208131 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold43074 SAMTools SNP 208441 208441 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43074 SAMTools SNP 209242 209242 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43074 SAMTools SNP 209810 209810 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43074 SAMTools SNP 212347 212347 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43074 SAMTools SNP 212356 212356 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43074 SAMTools SNP 212627 212627 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43074 SAMTools SNP 212648 212648 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43074 SAMTools SNP 212684 212684 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43074 SAMTools SNP 213005 213005 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 34854 34854 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43076 SAMTools SNP 40914 40914 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 65668 65668 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43076 SAMTools SNP 65713 65713 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43076 SAMTools SNP 65771 65771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 66017 66017 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43076 SAMTools SNP 66381 66381 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 66637 66637 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold43076 SAMTools SNP 67156 67156 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43076 SAMTools SNP 92486 92486 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43076 SAMTools SNP 92509 92509 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43076 SAMTools SNP 92817 92817 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C66%2C0:99 scaffold43076 SAMTools SNP 92964 92964 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C88:91 scaffold43076 SAMTools SNP 93104 93104 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D30.9%3BPV4%3D0.0018%2C9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C58:61 scaffold43076 SAMTools SNP 93259 93259 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C21%2C0:39 scaffold43076 SAMTools SNP 93864 93864 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 94726 94726 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 94727 94727 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 94927 94927 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43076 SAMTools SNP 95094 95094 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C48%2C0:93 scaffold43076 SAMTools SNP 95148 95148 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43076 SAMTools SNP 96043 96043 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43076 SAMTools SNP 96072 96072 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43076 SAMTools SNP 129477 129477 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43076 SAMTools SNP 135389 135389 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43076 SAMTools SNP 135439 135439 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43076 SAMTools SNP 135711 135711 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold43076 SAMTools SNP 136597 136597 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold43076 SAMTools SNP 137010 137010 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43076 SAMTools SNP 180706 180706 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold43076 SAMTools SNP 208851 208851 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.41%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43076 SAMTools SNP 208871 208871 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.5%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C150:99 scaffold43076 SAMTools SNP 210658 210658 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43076 SAMTools SNP 213817 213817 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43084 SAMTools SNP 1827 1827 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43084 SAMTools SNP 1853 1853 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C80:55 scaffold43084 SAMTools SNP 7964 7964 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C7.7e-15%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C152:55 scaffold43084 SAMTools SNP 8782 8782 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C58%2C0%2C31%3BMQ%3D44%3BFQ%3D171%3BPV4%3D0.3%2C1%2C0.11%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold43084 SAMTools SNP 18263 18263 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.46%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C224:99 scaffold43084 SAMTools SNP 19130 19130 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43084 SAMTools SNP 19131 19131 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43084 SAMTools SNP 50800 50800 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43084 SAMTools SNP 50849 50849 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43084 SAMTools SNP 50872 50872 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43084 SAMTools SNP 67554 67554 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43084 SAMTools SNP 72151 72151 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43084 SAMTools SNP 73615 73615 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43084 SAMTools SNP 73693 73693 31.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold43084 SAMTools SNP 74867 74867 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D35.4%3BPV4%3D1%2C7.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C71:65 scaffold43084 SAMTools SNP 77132 77132 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C1%2C39%2C151%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1.7e-25%2C0.3%2C0.23%2C1.5e-66;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold43084 SAMTools SNP 77289 77289 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C36%2C2%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.013%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43084 SAMTools SNP 90127 90127 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43084 SAMTools SNP 94218 94218 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43084 SAMTools SNP 99149 99149 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C129%2C40%2C112%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.9%2C2.9e-203%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43084 SAMTools SNP 102224 102224 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold43084 SAMTools SNP 104429 104429 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43084 SAMTools SNP 104496 104496 35.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold43084 SAMTools SNP 113061 113061 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C42%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C190%2C0:99 scaffold43084 SAMTools SNP 114113 114113 19.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold43084 SAMTools SNP 114130 114130 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43084 SAMTools SNP 129266 129266 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.34%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold43084 SAMTools SNP 129269 129269 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0048%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C225:99 scaffold43084 SAMTools SNP 142524 142524 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.11%2C0.14%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43084 SAMTools SNP 143557 143557 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.64%2C7.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43084 SAMTools SNP 149901 149901 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43084 SAMTools SNP 157066 157066 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43084 SAMTools SNP 165160 165160 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43084 SAMTools SNP 165167 165167 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C222:99 scaffold43084 SAMTools SNP 165616 165616 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43084 SAMTools SNP 165633 165633 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43084 SAMTools SNP 165674 165674 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43084 SAMTools SNP 165709 165709 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43084 SAMTools SNP 166029 166029 83.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold43084 SAMTools SNP 166129 166129 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43084 SAMTools SNP 166144 166144 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43084 SAMTools SNP 167633 167633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43084 SAMTools SNP 167872 167872 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43084 SAMTools SNP 168258 168258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43084 SAMTools SNP 168261 168261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43084 SAMTools SNP 168326 168326 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43084 SAMTools SNP 168344 168344 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43084 SAMTools SNP 168350 168350 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43084 SAMTools SNP 169531 169531 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C70%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43084 SAMTools SNP 169570 169570 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43084 SAMTools SNP 170635 170635 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C3%2C69%2C99%3BMQ%3D50%3BFQ%3D183%3BPV4%3D6.9e-14%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold43084 SAMTools SNP 171121 171121 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C27%2C5%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D0.037%2C0.05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C23%2C0:43 scaffold43084 SAMTools SNP 171459 171459 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C51%2C1%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold43084 SAMTools SNP 171606 171606 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0004%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43084 SAMTools SNP 174900 174900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C22%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C103:99 scaffold43084 SAMTools SNP 175452 175452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C13%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43084 SAMTools SNP 175488 175488 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold43084 SAMTools SNP 175560 175560 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C25%2C26%2C19%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.84%2C4e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43084 SAMTools SNP 175602 175602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43084 SAMTools SNP 175695 175695 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C31%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold43084 SAMTools SNP 175730 175730 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.018%2C4.6e-05%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43084 SAMTools SNP 175795 175795 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C53%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43084 SAMTools SNP 176174 176174 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43084 SAMTools SNP 177027 177027 42.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43084 SAMTools SNP 177262 177262 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C41%2C1%2C18%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.096%2C6.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43084 SAMTools SNP 177800 177800 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold43084 SAMTools SNP 181058 181058 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43084 SAMTools SNP 181333 181333 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43084 SAMTools SNP 181830 181830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.33%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43084 SAMTools SNP 181894 181894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43084 SAMTools SNP 182025 182025 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C17%2C29%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43084 SAMTools SNP 182734 182734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C69%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43084 SAMTools SNP 184466 184466 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43084 SAMTools SNP 184581 184581 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43084 SAMTools SNP 186930 186930 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43084 SAMTools SNP 187834 187834 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43084 SAMTools SNP 187860 187860 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43084 SAMTools SNP 192549 192549 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C135:99 scaffold43084 SAMTools SNP 192559 192559 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C0.44%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43084 SAMTools SNP 193166 193166 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.082%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43084 SAMTools SNP 193782 193782 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold43084 SAMTools SNP 193815 193815 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43084 SAMTools SNP 193838 193838 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43084 SAMTools SNP 193857 193857 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold43084 SAMTools SNP 207854 207854 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43084 SAMTools SNP 207856 207856 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43084 SAMTools SNP 208900 208900 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43108 SAMTools SNP 1132 1132 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43108 SAMTools SNP 1215 1215 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43108 SAMTools SNP 2498 2498 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43108 SAMTools SNP 2529 2529 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.43%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43108 SAMTools SNP 5749 5749 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold43108 SAMTools SNP 5823 5823 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.31%2C3.1e-12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C162:99 scaffold43108 SAMTools SNP 5877 5877 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.5%2C2.5e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold43108 SAMTools SNP 6301 6301 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold43108 SAMTools SNP 6309 6309 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.29%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold43108 SAMTools SNP 15255 15255 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43108 SAMTools SNP 28203 28203 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.031%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43108 SAMTools SNP 28934 28934 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C16%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.32%2C0.0063%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43108 SAMTools SNP 28936 28936 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.16%2C0.0045%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43108 SAMTools SNP 29038 29038 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43108 SAMTools SNP 33040 33040 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D209%2C55%2C260%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.012%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 33082 33082 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D586%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C178%2C119%2C201%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 35010 35010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C22%2C81%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 35034 35034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43108 SAMTools SNP 37479 37479 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D584%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C205%2C90%2C239%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 37748 37748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C34%2C18%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.43%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 38440 38440 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C59%2C6%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43108 SAMTools SNP 42578 42578 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C194:47 scaffold43108 SAMTools SNP 42587 42587 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C206:39 scaffold43108 SAMTools SNP 42746 42746 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43108 SAMTools SNP 43331 43331 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43108 SAMTools SNP 43334 43334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43108 SAMTools SNP 45205 45205 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43108 SAMTools SNP 45223 45223 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43108 SAMTools SNP 46119 46119 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C190:99 scaffold43108 SAMTools SNP 46227 46227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43108 SAMTools SNP 46604 46604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43108 SAMTools SNP 46768 46768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43108 SAMTools SNP 46769 46769 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43108 SAMTools SNP 47062 47062 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43108 SAMTools SNP 47131 47131 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43108 SAMTools SNP 47248 47248 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C24:27 scaffold43108 SAMTools SNP 47425 47425 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43108 SAMTools SNP 48139 48139 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43108 SAMTools SNP 48220 48220 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C0.26%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C245:96 scaffold43108 SAMTools SNP 48346 48346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C12%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.14%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold43108 SAMTools SNP 50340 50340 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.016%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold43108 SAMTools SNP 52529 52529 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.47%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C162:44 scaffold43108 SAMTools SNP 54232 54232 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C66%2C0:99 scaffold43108 SAMTools SNP 55483 55483 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 55885 55885 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 56498 56498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 56517 56517 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43108 SAMTools SNP 58404 58404 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43108 SAMTools SNP 59919 59919 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43108 SAMTools SNP 60161 60161 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43108 SAMTools SNP 60953 60953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43108 SAMTools SNP 60995 60995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43108 SAMTools SNP 61049 61049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43108 SAMTools SNP 62001 62001 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.081%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43108 SAMTools SNP 62086 62086 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43108 SAMTools SNP 78047 78047 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43108 SAMTools SNP 78217 78217 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43108 SAMTools SNP 78275 78275 86.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold43108 SAMTools SNP 78561 78561 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43108 SAMTools SNP 78594 78594 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold43108 SAMTools SNP 79201 79201 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43108 SAMTools SNP 86857 86857 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43108 SAMTools SNP 86898 86898 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43108 SAMTools SNP 88074 88074 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold43108 SAMTools SNP 88154 88154 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43108 SAMTools SNP 88163 88163 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold43108 SAMTools SNP 89123 89123 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43108 SAMTools SNP 89127 89127 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43108 SAMTools SNP 132351 132351 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 132885 132885 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43108 SAMTools SNP 133582 133582 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.63%2C1.8e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C168:51 scaffold43108 SAMTools SNP 133657 133657 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C152:55 scaffold43108 SAMTools SNP 133687 133687 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold43108 SAMTools SNP 134150 134150 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C128:99 scaffold43108 SAMTools SNP 137203 137203 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43108 SAMTools SNP 137217 137217 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43108 SAMTools SNP 137225 137225 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold43108 SAMTools SNP 137988 137988 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 138178 138178 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43108 SAMTools SNP 138207 138207 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 138242 138242 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 138248 138248 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 166433 166433 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 166470 166470 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 167501 167501 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43108 SAMTools SNP 167557 167557 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43108 SAMTools SNP 174553 174553 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43116 SAMTools SNP 113 113 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 272 272 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 4234 4234 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C179:99 scaffold43116 SAMTools SNP 4246 4246 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.39%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C177:99 scaffold43116 SAMTools SNP 6346 6346 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43116 SAMTools SNP 13606 13606 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.49%2C2.1e-09%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold43116 SAMTools SNP 13618 13618 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.00049%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43116 SAMTools SNP 13915 13915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43116 SAMTools SNP 15615 15615 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43116 SAMTools SNP 15678 15678 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43116 SAMTools SNP 15696 15696 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 15741 15741 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43116 SAMTools SNP 17341 17341 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43116 SAMTools SNP 18104 18104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43116 SAMTools SNP 18130 18130 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43116 SAMTools SNP 18347 18347 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C57%2C0:99 scaffold43116 SAMTools SNP 18590 18590 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43116 SAMTools SNP 18786 18786 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C74:46 scaffold43116 SAMTools SNP 19073 19073 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43116 SAMTools SNP 19295 19295 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold43116 SAMTools SNP 19717 19717 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0021%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C129:37 scaffold43116 SAMTools SNP 21169 21169 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43116 SAMTools SNP 21999 21999 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43116 SAMTools SNP 22002 22002 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 39635 39635 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43116 SAMTools SNP 47649 47649 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C57%2C0:99 scaffold43116 SAMTools SNP 47871 47871 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43116 SAMTools SNP 47918 47918 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C85:88 scaffold43116 SAMTools SNP 48038 48038 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C51%2C0:99 scaffold43116 SAMTools SNP 48185 48185 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C66%2C0:99 scaffold43116 SAMTools SNP 48337 48337 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D41%3BPV4%3D0.036%2C0.4%2C1%2C7.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C75:71 scaffold43116 SAMTools SNP 48464 48464 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43116 SAMTools SNP 48923 48923 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C96%2C0:99 scaffold43116 SAMTools SNP 49051 49051 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43116 SAMTools SNP 52461 52461 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43116 SAMTools SNP 53981 53981 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43116 SAMTools SNP 63055 63055 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43116 SAMTools SNP 63076 63076 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C7%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43116 SAMTools SNP 63425 63425 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43116 SAMTools SNP 63902 63902 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C62%2C23%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 63925 63925 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C11%2C15%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C3.6e-09%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43116 SAMTools SNP 65796 65796 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold43116 SAMTools SNP 66670 66670 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43116 SAMTools SNP 70435 70435 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43116 SAMTools SNP 70474 70474 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43116 SAMTools SNP 70938 70938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43116 SAMTools SNP 71325 71325 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C149:99 scaffold43116 SAMTools SNP 71329 71329 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold43116 SAMTools SNP 71372 71372 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 71394 71394 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43116 SAMTools SNP 71817 71817 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43116 SAMTools SNP 71818 71818 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43116 SAMTools SNP 77998 77998 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C5%2C3%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.032%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43116 SAMTools SNP 78466 78466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 79664 79664 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43116 SAMTools SNP 80408 80408 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43116 SAMTools SNP 81366 81366 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C44%2C19%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D2.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43116 SAMTools SNP 81375 81375 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D19%2C0%2C34%2C92%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D4.3e-10%2C0.057%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold43116 SAMTools SNP 81878 81878 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C94%2C0%2C18%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43116 SAMTools SNP 82259 82259 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C2%2C64%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 83746 83746 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 84202 84202 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43116 SAMTools SNP 84416 84416 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold43116 SAMTools SNP 84628 84628 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43116 SAMTools SNP 85629 85629 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.16%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 85679 85679 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.021%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43116 SAMTools SNP 86224 86224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C28%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43116 SAMTools SNP 86588 86588 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 86603 86603 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43116 SAMTools SNP 86606 86606 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43116 SAMTools SNP 86769 86769 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C14%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold43116 SAMTools SNP 86814 86814 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C14%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.54%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold43116 SAMTools SNP 87536 87536 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43116 SAMTools SNP 87539 87539 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43116 SAMTools SNP 87792 87792 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C3%2C36%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold43116 SAMTools SNP 89590 89590 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C9%2C20%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.47%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43116 SAMTools SNP 89654 89654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C46%2C65%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.11%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43116 SAMTools SNP 89813 89813 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C67%2C2%2C9%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.72%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43116 SAMTools SNP 89819 89819 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C87%2C1%2C19%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.12%2C0.43%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43116 SAMTools SNP 89986 89986 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C22%2C57%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.019%2C0.48%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold43116 SAMTools SNP 89998 89998 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C55%2C0%2C16%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.0097%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold43116 SAMTools SNP 90049 90049 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.16%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43116 SAMTools SNP 90087 90087 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C102%2C0:99 scaffold43116 SAMTools SNP 91601 91601 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.13%2C2.5e-09%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43116 SAMTools SNP 93238 93238 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43116 SAMTools SNP 93477 93477 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43116 SAMTools SNP 93686 93686 36.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold43116 SAMTools SNP 93918 93918 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C4%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C163%2C0:99 scaffold43116 SAMTools SNP 94023 94023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43116 SAMTools SNP 95999 95999 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43116 SAMTools SNP 96035 96035 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43116 SAMTools SNP 96050 96050 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.39%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 96573 96573 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43116 SAMTools SNP 96636 96636 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold43116 SAMTools SNP 96681 96681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43116 SAMTools SNP 96916 96916 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C26%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43116 SAMTools SNP 97120 97120 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43116 SAMTools SNP 97354 97354 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43116 SAMTools SNP 97411 97411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold43116 SAMTools SNP 97456 97456 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43116 SAMTools SNP 101736 101736 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 103440 103440 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00067%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43116 SAMTools SNP 103504 103504 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 103954 103954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43116 SAMTools SNP 106267 106267 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C52%2C0%2C29%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1.4e-10%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43116 SAMTools SNP 114586 114586 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43116 SAMTools SNP 114589 114589 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.39%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43116 SAMTools SNP 115511 115511 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D37%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C7.4e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C252:36 scaffold43116 SAMTools SNP 115753 115753 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.034%2C2.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43116 SAMTools SNP 115967 115967 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C4e-26%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43116 SAMTools SNP 116432 116432 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0208%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.52%2C1.2e-08%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C223:36 scaffold43116 SAMTools SNP 117071 117071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43116 SAMTools SNP 117603 117603 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43116 SAMTools SNP 117653 117653 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C33%2C0:63 scaffold43116 SAMTools SNP 117666 117666 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C135%2C0:99 scaffold43116 SAMTools SNP 117974 117974 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43116 SAMTools SNP 118038 118038 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C53%2C0%2C17%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.062%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43116 SAMTools SNP 118313 118313 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C0%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.18%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold43116 SAMTools SNP 118329 118329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43116 SAMTools SNP 118393 118393 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43116 SAMTools SNP 122009 122009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 122062 122062 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.025%2C0.053%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43116 SAMTools SNP 124441 124441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C46%2C18%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 124524 124524 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 125172 125172 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D5.3e-05%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43116 SAMTools SNP 129297 129297 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C132:48 scaffold43116 SAMTools SNP 129466 129466 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.33%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43116 SAMTools SNP 130308 130308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C64%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.13%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 130311 130311 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43116 SAMTools SNP 130344 130344 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C87%2C0%2C49%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.3%2C0.014%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold43116 SAMTools SNP 130356 130356 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C90%2C2%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 130392 130392 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C4%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 130588 130588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43116 SAMTools SNP 130657 130657 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.27%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43116 SAMTools SNP 131798 131798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.47%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold43116 SAMTools SNP 133659 133659 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.00087%2C0.00073%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43116 SAMTools SNP 133668 133668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C22%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold43116 SAMTools SNP 133713 133713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43116 SAMTools SNP 133741 133741 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.052%2C2.8e-08%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43116 SAMTools SNP 133779 133779 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C8%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D6.1e-05%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold43116 SAMTools SNP 133791 133791 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C10%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.00052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43116 SAMTools SNP 134171 134171 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 134597 134597 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 134610 134610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 134672 134672 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 135204 135204 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43116 SAMTools SNP 136271 136271 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43116 SAMTools SNP 143776 143776 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43116 SAMTools SNP 144906 144906 59.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold43116 SAMTools SNP 144990 144990 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.62%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43116 SAMTools SNP 145504 145504 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold43116 SAMTools SNP 146027 146027 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C0.25%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C177:99 scaffold43116 SAMTools SNP 146111 146111 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold43116 SAMTools SNP 146207 146207 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43116 SAMTools SNP 146213 146213 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold43116 SAMTools SNP 146243 146243 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold43116 SAMTools SNP 146650 146650 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43116 SAMTools SNP 146740 146740 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43116 SAMTools SNP 150880 150880 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.013%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C152:54 scaffold43116 SAMTools SNP 155376 155376 14.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43116 SAMTools SNP 155688 155688 65.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold43116 SAMTools SNP 155922 155922 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold43116 SAMTools SNP 155985 155985 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C78%2C0:99 scaffold43116 SAMTools SNP 156267 156267 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.44%2C2.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43116 SAMTools SNP 157020 157020 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold43116 SAMTools SNP 157647 157647 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold43116 SAMTools SNP 157851 157851 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.17%2C4.9e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C156:58 scaffold43116 SAMTools SNP 157965 157965 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold43116 SAMTools SNP 159180 159180 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43116 SAMTools SNP 159186 159186 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C127:76 scaffold43116 SAMTools SNP 159286 159286 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C132:51 scaffold43116 SAMTools SNP 160612 160612 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43116 SAMTools SNP 160669 160669 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43116 SAMTools SNP 160915 160915 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C6.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C99:99 scaffold43116 SAMTools SNP 162514 162514 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43116 SAMTools SNP 175193 175193 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43116 SAMTools SNP 179721 179721 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold43116 SAMTools SNP 179809 179809 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43116 SAMTools SNP 180563 180563 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43116 SAMTools SNP 184255 184255 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43116 SAMTools SNP 193165 193165 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 193173 193173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 193564 193564 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 193593 193593 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43116 SAMTools SNP 202947 202947 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold43116 SAMTools SNP 203074 203074 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold43116 SAMTools SNP 203497 203497 30.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold43116 SAMTools SNP 203563 203563 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C72%2C0:99 scaffold43122 SAMTools SNP 9168 9168 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 9180 9180 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 9263 9263 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 9269 9269 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 9598 9598 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold43122 SAMTools SNP 10788 10788 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43122 SAMTools SNP 10796 10796 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.045%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold43122 SAMTools SNP 10832 10832 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C254:99 scaffold43122 SAMTools SNP 10988 10988 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 11535 11535 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C2%3BMQ%3D49%3BFQ%3D102%3BPV4%3D0.6%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43122 SAMTools SNP 11544 11544 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D49%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C86:93 scaffold43122 SAMTools SNP 12131 12131 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C4%3BMQ%3D48%3BFQ%3D114%3BPV4%3D0.091%2C1%2C0.095%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43122 SAMTools SNP 13207 13207 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C0.2%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43122 SAMTools SNP 13216 13216 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.12%2C0.33%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43122 SAMTools SNP 13240 13240 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43122 SAMTools SNP 13892 13892 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.021%2C0.055%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43122 SAMTools SNP 14850 14850 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.51%2C0.0033%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43122 SAMTools SNP 14851 14851 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C0.13%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold43122 SAMTools SNP 20433 20433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43122 SAMTools SNP 20815 20815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold43122 SAMTools SNP 20968 20968 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.023%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43122 SAMTools SNP 23658 23658 213 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C18%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.33%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C187:99 scaffold43122 SAMTools SNP 23668 23668 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C243:99 scaffold43122 SAMTools SNP 23698 23698 120 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold43122 SAMTools SNP 28700 28700 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.34%2C1.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold43122 SAMTools SNP 28760 28760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C19%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold43122 SAMTools SNP 29822 29822 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C23%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.00016%2C2.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43122 SAMTools SNP 29894 29894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.054%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 30129 30129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 30949 30949 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43122 SAMTools SNP 31326 31326 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.27%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43122 SAMTools SNP 31392 31392 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C249:99 scaffold43122 SAMTools SNP 32510 32510 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43122 SAMTools SNP 32615 32615 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43122 SAMTools SNP 35104 35104 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C81%2C0:99 scaffold43122 SAMTools SNP 35332 35332 19 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold43122 SAMTools SNP 35413 35413 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C255%2C0:99 scaffold43122 SAMTools SNP 36475 36475 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C5%2C26%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.019%2C5.2e-42%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43122 SAMTools SNP 36504 36504 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C5%2C25%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0015%2C1.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43122 SAMTools SNP 37596 37596 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C38%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 37620 37620 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C43%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 38070 38070 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43122 SAMTools SNP 38073 38073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D0.13%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold43122 SAMTools SNP 38899 38899 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C11%3BMQ%3D49%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43122 SAMTools SNP 39530 39530 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 41003 41003 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C15%2C0:27 scaffold43122 SAMTools SNP 49236 49236 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0018%2C0.027%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold43122 SAMTools SNP 49586 49586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43122 SAMTools SNP 49634 49634 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43122 SAMTools SNP 49643 49643 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43122 SAMTools SNP 49934 49934 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43122 SAMTools SNP 51136 51136 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C14%2C0%3BMQ%3D49%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C247:99 scaffold43122 SAMTools SNP 51215 51215 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold43122 SAMTools SNP 51803 51803 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 53068 53068 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D34%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43122 SAMTools SNP 53089 53089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D35%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43122 SAMTools SNP 53149 53149 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D33%3BFQ%3D4.13%3BPV4%3D0.29%2C0.29%2C0.14%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C29:32 scaffold43122 SAMTools SNP 53161 53161 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C5%2C0%3BMQ%3D35%3BFQ%3D86%3BPV4%3D0.00032%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold43122 SAMTools SNP 53185 53185 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D38%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43122 SAMTools SNP 53643 53643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C26%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 54055 54055 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C52%2C14%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 54100 54100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C43%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 54115 54115 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C43%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.09%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 54466 54466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 55459 55459 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C8%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0056%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold43122 SAMTools SNP 55468 55468 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43122 SAMTools SNP 55714 55714 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43122 SAMTools SNP 57357 57357 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C175%2C2%2C145%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 57811 57811 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C0%2C13%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.56%2C0.26%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43122 SAMTools SNP 58160 58160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43122 SAMTools SNP 58216 58216 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00061%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43122 SAMTools SNP 58241 58241 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold43122 SAMTools SNP 58301 58301 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C9%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D7.1e-06%2C0.16%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43122 SAMTools SNP 58644 58644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 59996 59996 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43122 SAMTools SNP 60011 60011 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C4%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.074%2C0.31%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43122 SAMTools SNP 61134 61134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C23%3BMQ%3D45%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43122 SAMTools SNP 61170 61170 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D37%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43122 SAMTools SNP 61664 61664 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 63546 63546 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D39%3BFQ%3D-33%3BPV4%3D0.47%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C6%2C0:10 scaffold43122 SAMTools SNP 66789 66789 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43122 SAMTools SNP 68076 68076 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold43122 SAMTools SNP 77390 77390 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D37%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C75%2C0:99 scaffold43122 SAMTools SNP 81283 81283 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43122 SAMTools SNP 81376 81376 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43122 SAMTools SNP 89023 89023 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 96898 96898 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 118934 118934 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43122 SAMTools SNP 119594 119594 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43122 SAMTools SNP 119690 119690 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43122 SAMTools SNP 119695 119695 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43122 SAMTools SNP 119948 119948 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 120216 120216 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 120252 120252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43122 SAMTools SNP 128422 128422 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C274%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43122 SAMTools SNP 132383 132383 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43122 SAMTools SNP 132601 132601 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C1%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D4.1e-06%2C4.5e-07%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43122 SAMTools SNP 161593 161593 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43122 SAMTools SNP 161950 161950 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43122 SAMTools SNP 162214 162214 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C39%2C0:75 scaffold43122 SAMTools SNP 162253 162253 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43122 SAMTools SNP 162357 162357 64.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold43122 SAMTools SNP 162829 162829 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold43122 SAMTools SNP 163432 163432 38.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold43122 SAMTools SNP 163450 163450 40.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold43122 SAMTools SNP 169803 169803 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43122 SAMTools SNP 171199 171199 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold43122 SAMTools SNP 171217 171217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C2%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 181573 181573 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43122 SAMTools SNP 183925 183925 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43122 SAMTools SNP 186710 186710 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C26%3BMQ%3D9%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C102%2C0:99 scaffold43122 SAMTools SNP 186749 186749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C26%3BMQ%3D39%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43122 SAMTools SNP 186986 186986 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C470%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43122 SAMTools SNP 187032 187032 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C594%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43122 SAMTools SNP 188272 188272 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43122 SAMTools SNP 189119 189119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C44%2C19%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43122 SAMTools SNP 189556 189556 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C20%2C22%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.33%2C5.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43130 SAMTools SNP 441 441 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43130 SAMTools SNP 468 468 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43130 SAMTools SNP 1237 1237 82 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C119%2C110%2C119%2C0%2C110:16 scaffold43130 SAMTools SNP 2457 2457 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold43130 SAMTools SNP 2460 2460 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43130 SAMTools SNP 7832 7832 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.15%2C0.45%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43130 SAMTools SNP 7876 7876 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43130 SAMTools SNP 18544 18544 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 18615 18615 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold43130 SAMTools SNP 27571 27571 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43130 SAMTools SNP 27582 27582 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C134:99 scaffold43130 SAMTools SNP 28974 28974 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C2%2C4%3BMQ%3D48%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43130 SAMTools SNP 30254 30254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43130 SAMTools SNP 30266 30266 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43130 SAMTools SNP 31307 31307 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43130 SAMTools SNP 33909 33909 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43130 SAMTools SNP 34022 34022 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C160:57 scaffold43130 SAMTools SNP 37106 37106 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43130 SAMTools SNP 37416 37416 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43130 SAMTools SNP 40148 40148 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43130 SAMTools SNP 41742 41742 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 41744 41744 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 41944 41944 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43130 SAMTools SNP 41984 41984 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43130 SAMTools SNP 42847 42847 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 42861 42861 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43130 SAMTools SNP 44007 44007 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43130 SAMTools SNP 49157 49157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 50910 50910 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C22%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 51158 51158 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43130 SAMTools SNP 51904 51904 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43130 SAMTools SNP 51916 51916 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.015%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold43130 SAMTools SNP 53332 53332 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.057%2C9.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43130 SAMTools SNP 54024 54024 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 54857 54857 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.11%2C0.0051%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43130 SAMTools SNP 55994 55994 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C216:99 scaffold43130 SAMTools SNP 56366 56366 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold43130 SAMTools SNP 56398 56398 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold43130 SAMTools SNP 68384 68384 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43130 SAMTools SNP 69538 69538 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43130 SAMTools SNP 72691 72691 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43130 SAMTools SNP 73749 73749 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43130 SAMTools SNP 73761 73761 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43130 SAMTools SNP 73872 73872 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.032%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C173:99 scaffold43130 SAMTools SNP 78125 78125 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C33%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 78501 78501 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C0%2C13%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.052%2C3.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43130 SAMTools SNP 78526 78526 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C2%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.58%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold43130 SAMTools SNP 78646 78646 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43130 SAMTools SNP 78658 78658 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C233:99 scaffold43130 SAMTools SNP 78980 78980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold43130 SAMTools SNP 80643 80643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43130 SAMTools SNP 83722 83722 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.61%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold43130 SAMTools SNP 83734 83734 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.13%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43130 SAMTools SNP 84796 84796 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0024%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 84861 84861 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.69%2C0.05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43130 SAMTools SNP 84957 84957 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.59%2C0.00058%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43130 SAMTools SNP 85668 85668 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43130 SAMTools SNP 85671 85671 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43130 SAMTools SNP 86026 86026 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 86083 86083 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 86164 86164 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43130 SAMTools SNP 86769 86769 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43130 SAMTools SNP 95199 95199 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43130 SAMTools SNP 95614 95614 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43130 SAMTools SNP 99002 99002 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43130 SAMTools SNP 99369 99369 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.37%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 99411 99411 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C20%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43130 SAMTools SNP 100120 100120 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C29%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 100388 100388 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C24%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 100569 100569 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C2.5e-05%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 100608 100608 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C19%2C29%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.027%2C7.5e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43130 SAMTools SNP 100631 100631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C27%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C3.6e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 100935 100935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C30%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43130 SAMTools SNP 100977 100977 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 101102 101102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C35%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 101174 101174 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.043%2C0.0001%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43130 SAMTools SNP 101204 101204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C42%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43130 SAMTools SNP 101665 101665 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C17%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.063%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 102354 102354 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C0%2C15%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.32%2C1%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43130 SAMTools SNP 102900 102900 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43130 SAMTools SNP 103053 103053 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D49%3BFQ%3D71%3BPV4%3D1%2C1%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43130 SAMTools SNP 103975 103975 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C2%3BMQ%3D48%3BFQ%3D135%3BPV4%3D0.54%2C0.38%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold43130 SAMTools SNP 103996 103996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D48%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43130 SAMTools SNP 105279 105279 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0023%2C0.13%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43130 SAMTools SNP 105544 105544 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43130 SAMTools SNP 105828 105828 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 105871 105871 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 105940 105940 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.13%2C5.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold43130 SAMTools SNP 106078 106078 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 106446 106446 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.06%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43130 SAMTools SNP 106646 106646 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43130 SAMTools SNP 106661 106661 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43130 SAMTools SNP 106901 106901 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.68%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43130 SAMTools SNP 107071 107071 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold43130 SAMTools SNP 107104 107104 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.54%2C0.45%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43130 SAMTools SNP 107720 107720 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C11%2C7%3BMQ%3D43%3BFQ%3D224%3BPV4%3D0.52%2C1%2C0.042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43130 SAMTools SNP 107929 107929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C81%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43130 SAMTools SNP 107941 107941 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C0%2C36%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.27%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43130 SAMTools SNP 108784 108784 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C57%2C0:99 scaffold43130 SAMTools SNP 108838 108838 98.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C15%2C0:27 scaffold43130 SAMTools SNP 109048 109048 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C7%3BMQ%3D48%3BFQ%3D55%3BPV4%3D0.21%2C0.11%2C0.32%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold43130 SAMTools SNP 109102 109102 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C51%2C0:99 scaffold43130 SAMTools SNP 110198 110198 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C43%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 111323 111323 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D46%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43130 SAMTools SNP 112270 112270 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43130 SAMTools SNP 112285 112285 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43130 SAMTools SNP 112357 112357 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold43130 SAMTools SNP 112487 112487 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C16:19 scaffold43130 SAMTools SNP 112553 112553 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43130 SAMTools SNP 112584 112584 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.015%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C82:85 scaffold43130 SAMTools SNP 112787 112787 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 112830 112830 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 112978 112978 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 113017 113017 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43130 SAMTools SNP 113182 113182 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C27%2C0:51 scaffold43130 SAMTools SNP 113206 113206 31.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold43130 SAMTools SNP 113263 113263 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C1%2C4%3BMQ%3D32%3BFQ%3D-31%3BPV4%3D0.048%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C4%2C0:7 scaffold43130 SAMTools SNP 113287 113287 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C2%2C6%3BMQ%3D27%3BFQ%3D-33%3BPV4%3D0.00072%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C6%2C0:10 scaffold43130 SAMTools SNP 115793 115793 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43130 SAMTools SNP 116094 116094 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43130 SAMTools SNP 116721 116721 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43130 SAMTools SNP 116784 116784 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C3%2C5%3BMQ%3D47%3BFQ%3D100%3BPV4%3D0.078%2C1%2C0.0021%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43130 SAMTools SNP 118702 118702 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C12%2C5%3BMQ%3D28%3BFQ%3D23%3BPV4%3D1%2C1%2C0.43%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C50:53 scaffold43130 SAMTools SNP 118759 118759 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D46%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43130 SAMTools SNP 118996 118996 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D48%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43130 SAMTools SNP 119165 119165 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 120160 120160 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43130 SAMTools SNP 120174 120174 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43130 SAMTools SNP 120217 120217 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C216:99 scaffold43130 SAMTools SNP 120425 120425 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.057%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43130 SAMTools SNP 120560 120560 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.033%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43130 SAMTools SNP 120668 120668 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C20%2C10%3BMQ%3D33%3BFQ%3D-72%3BPV4%3D0.16%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43130 SAMTools SNP 120953 120953 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C33%2C7%3BMQ%3D29%3BFQ%3D84%3BPV4%3D0.075%2C1%2C0.19%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold43130 SAMTools SNP 121012 121012 63.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold43130 SAMTools SNP 121354 121354 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43130 SAMTools SNP 121577 121577 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43130 SAMTools SNP 121580 121580 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43130 SAMTools SNP 121627 121627 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C7%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.11%2C0.055%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold43130 SAMTools SNP 122027 122027 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold43130 SAMTools SNP 122060 122060 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 123097 123097 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43130 SAMTools SNP 123267 123267 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold43130 SAMTools SNP 123277 123277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43130 SAMTools SNP 123501 123501 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43130 SAMTools SNP 123507 123507 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43130 SAMTools SNP 123516 123516 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43130 SAMTools SNP 123522 123522 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43130 SAMTools SNP 123567 123567 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C249:99 scaffold43130 SAMTools SNP 123907 123907 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43130 SAMTools SNP 124021 124021 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C224:99 scaffold43130 SAMTools SNP 124213 124213 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C231:99 scaffold43130 SAMTools SNP 124234 124234 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold43130 SAMTools SNP 124258 124258 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 124694 124694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43130 SAMTools SNP 124730 124730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43130 SAMTools SNP 125089 125089 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C45%2C0:87 scaffold43130 SAMTools SNP 125338 125338 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43130 SAMTools SNP 125375 125375 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43130 SAMTools SNP 125557 125557 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43130 SAMTools SNP 125789 125789 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43130 SAMTools SNP 126118 126118 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C9%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.051%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 126238 126238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43130 SAMTools SNP 126594 126594 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43130 SAMTools SNP 126645 126645 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 126877 126877 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C9%2C31%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.76%2C6.1e-36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43130 SAMTools SNP 126967 126967 207 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C30%2C12%2C230%2C0%2C227:33 scaffold43130 SAMTools SNP 126970 126970 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43130 SAMTools SNP 127394 127394 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.0018%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 127536 127536 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 128093 128093 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43130 SAMTools SNP 128565 128565 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43130 SAMTools SNP 128818 128818 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.45%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43130 SAMTools SNP 128980 128980 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.055%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43130 SAMTools SNP 129000 129000 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C9%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.098%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43130 SAMTools SNP 129208 129208 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43130 SAMTools SNP 129721 129721 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43130 SAMTools SNP 129724 129724 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43130 SAMTools SNP 129797 129797 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.035%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43130 SAMTools SNP 129812 129812 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43130 SAMTools SNP 129974 129974 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43130 SAMTools SNP 130630 130630 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43130 SAMTools SNP 130645 130645 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold43130 SAMTools SNP 130832 130832 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43130 SAMTools SNP 130918 130918 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 131098 131098 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.00072%2C0.2%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43130 SAMTools SNP 131409 131409 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.00065%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43130 SAMTools SNP 131666 131666 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43130 SAMTools SNP 131826 131826 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold43130 SAMTools SNP 131852 131852 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold43130 SAMTools SNP 132417 132417 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43130 SAMTools SNP 132764 132764 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43130 SAMTools SNP 132788 132788 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43130 SAMTools SNP 134757 134757 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-05%2C1%2C1%2C3.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 135379 135379 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C155:99 scaffold43130 SAMTools SNP 135408 135408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43130 SAMTools SNP 135564 135564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 136188 136188 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold43130 SAMTools SNP 136425 136425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C2.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 137032 137032 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold43130 SAMTools SNP 137510 137510 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43130 SAMTools SNP 137522 137522 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43130 SAMTools SNP 137829 137829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C68%2C0%2C53%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.14%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43130 SAMTools SNP 138483 138483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 138956 138956 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 139439 139439 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold43130 SAMTools SNP 149186 149186 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43130 SAMTools SNP 149188 149188 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43130 SAMTools SNP 153012 153012 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold43130 SAMTools SNP 154282 154282 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43130 SAMTools SNP 154289 154289 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold43130 SAMTools SNP 155349 155349 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43130 SAMTools SNP 159254 159254 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43130 SAMTools SNP 159294 159294 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C115:30 scaffold43130 SAMTools SNP 159668 159668 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43130 SAMTools SNP 159678 159678 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43130 SAMTools SNP 159720 159720 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.2%2C0.1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C20:23 scaffold43130 SAMTools SNP 159795 159795 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43130 SAMTools SNP 162890 162890 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43130 SAMTools SNP 168591 168591 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C172:99 scaffold43130 SAMTools SNP 168822 168822 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C17%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C243:99 scaffold43130 SAMTools SNP 169041 169041 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C225:99 scaffold43130 SAMTools SNP 169080 169080 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C130:39 scaffold43130 SAMTools SNP 169100 169100 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.084%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C127:55 scaffold43130 SAMTools SNP 169625 169625 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43130 SAMTools SNP 169836 169836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C16%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold43130 SAMTools SNP 170000 170000 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold43130 SAMTools SNP 170018 170018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold43130 SAMTools SNP 171348 171348 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43130 SAMTools SNP 171390 171390 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43130 SAMTools SNP 171426 171426 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43130 SAMTools SNP 172072 172072 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.6%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43130 SAMTools SNP 172879 172879 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43130 SAMTools SNP 172900 172900 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 174221 174221 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43130 SAMTools SNP 174579 174579 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C37%2C2%3BMQ%3D28%3BFQ%3D153%3BPV4%3D1%2C0.22%2C0.3%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C180:99 scaffold43130 SAMTools SNP 174591 174591 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C2%2C22%2C1%3BMQ%3D26%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold43130 SAMTools SNP 181401 181401 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C90%2C0:99 scaffold43130 SAMTools SNP 181607 181607 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.079%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43130 SAMTools SNP 181644 181644 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43130 SAMTools SNP 183365 183365 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C33%2C0:63 scaffold43130 SAMTools SNP 184418 184418 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43130 SAMTools SNP 184441 184441 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 184446 184446 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43130 SAMTools SNP 184635 184635 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43130 SAMTools SNP 185180 185180 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.01%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43130 SAMTools SNP 186527 186527 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C1%2C13%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.005%2C3.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43130 SAMTools SNP 186829 186829 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1.7e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43130 SAMTools SNP 191138 191138 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43130 SAMTools SNP 191141 191141 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43130 SAMTools SNP 191163 191163 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43134 SAMTools SNP 67 67 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43134 SAMTools SNP 87 87 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43134 SAMTools SNP 5900 5900 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43134 SAMTools SNP 8181 8181 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 9970 9970 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C2%2C98%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-49%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 10075 10075 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C129%2C5%2C98%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C9.3e-204%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43134 SAMTools SNP 10259 10259 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold43134 SAMTools SNP 15718 15718 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold43134 SAMTools SNP 32704 32704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43134 SAMTools SNP 32804 32804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43134 SAMTools SNP 32852 32852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43134 SAMTools SNP 33507 33507 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0094%2C0.056%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43134 SAMTools SNP 34737 34737 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43134 SAMTools SNP 34827 34827 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43134 SAMTools SNP 34830 34830 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43134 SAMTools SNP 34856 34856 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43134 SAMTools SNP 36273 36273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C36%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43134 SAMTools SNP 36305 36305 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.049%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 36309 36309 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 36381 36381 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.098%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43134 SAMTools SNP 37067 37067 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43134 SAMTools SNP 37175 37175 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0062%2C0.013%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43134 SAMTools SNP 37641 37641 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.49%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 38109 38109 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C13%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.63%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold43134 SAMTools SNP 40363 40363 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C4%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43134 SAMTools SNP 40605 40605 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.028%2C6.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C191:34 scaffold43134 SAMTools SNP 42445 42445 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43134 SAMTools SNP 55081 55081 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold43134 SAMTools SNP 55082 55082 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C192:99 scaffold43134 SAMTools SNP 56776 56776 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.081%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold43134 SAMTools SNP 57080 57080 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C45%2C0:87 scaffold43134 SAMTools SNP 57223 57223 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C72%2C0:99 scaffold43134 SAMTools SNP 57400 57400 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1.3e-12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43134 SAMTools SNP 65265 65265 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C63:43 scaffold43134 SAMTools SNP 65579 65579 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43134 SAMTools SNP 65709 65709 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43134 SAMTools SNP 65759 65759 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C67:70 scaffold43134 SAMTools SNP 66476 66476 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 72745 72745 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43134 SAMTools SNP 73600 73600 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold43134 SAMTools SNP 73615 73615 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43134 SAMTools SNP 73849 73849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43134 SAMTools SNP 73888 73888 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43134 SAMTools SNP 74208 74208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43134 SAMTools SNP 74246 74246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43134 SAMTools SNP 84272 84272 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C34%2C23%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.81%2C2.9e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43134 SAMTools SNP 85209 85209 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C255%2C0:99 scaffold43134 SAMTools SNP 85485 85485 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C98%2C21%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 85500 85500 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C105%2C10%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 86010 86010 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D136%3BPV4%3D5.3e-05%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43134 SAMTools SNP 86074 86074 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C17%2C43%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.15%2C5.3e-85%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold43134 SAMTools SNP 86635 86635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C3%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 90713 90713 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 93167 93167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.061%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 94004 94004 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 95109 95109 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43134 SAMTools SNP 95130 95130 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43134 SAMTools SNP 95154 95154 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold43134 SAMTools SNP 95166 95166 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43134 SAMTools SNP 97025 97025 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43134 SAMTools SNP 97070 97070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43134 SAMTools SNP 97208 97208 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43134 SAMTools SNP 97214 97214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43134 SAMTools SNP 98366 98366 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 98681 98681 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C1%2C13%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.66%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43134 SAMTools SNP 98958 98958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43134 SAMTools SNP 98992 98992 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43134 SAMTools SNP 99552 99552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C58%2C29%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 99606 99606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C43%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 99615 99615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C71%3BMQ%3D50%3BFQ%3D-247%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43134 SAMTools SNP 100065 100065 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 100601 100601 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 100848 100848 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold43134 SAMTools SNP 100860 100860 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43134 SAMTools SNP 101841 101841 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43134 SAMTools SNP 101859 101859 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold43134 SAMTools SNP 105188 105188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 107528 107528 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43134 SAMTools SNP 107919 107919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C37%2C38%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 110318 110318 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D831%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C662%2C168%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43134 SAMTools SNP 110568 110568 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D756%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C705%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43134 SAMTools SNP 110612 110612 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C210%2C18%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C7.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 110652 110652 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold43134 SAMTools SNP 111414 111414 30.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1331%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold43134 SAMTools SNP 111492 111492 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1246%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43134 SAMTools SNP 111596 111596 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43134 SAMTools SNP 113330 113330 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 113351 113351 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43134 SAMTools SNP 117588 117588 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43134 SAMTools SNP 117642 117642 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43134 SAMTools SNP 117663 117663 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43134 SAMTools SNP 117979 117979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43134 SAMTools SNP 118166 118166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43134 SAMTools SNP 118232 118232 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43134 SAMTools SNP 119346 119346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D6.6e-06%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43134 SAMTools SNP 119394 119394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 119505 119505 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C72%2C0:99 scaffold43134 SAMTools SNP 123624 123624 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43134 SAMTools SNP 123672 123672 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43134 SAMTools SNP 123759 123759 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43134 SAMTools SNP 124372 124372 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C23%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0012%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43134 SAMTools SNP 124374 124374 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C17%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0015%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43134 SAMTools SNP 124514 124514 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C21%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold43134 SAMTools SNP 124786 124786 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C7%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 125160 125160 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 125193 125193 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C5%3BMQ%3D49%3BFQ%3D208%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C244:99 scaffold43134 SAMTools SNP 125746 125746 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 126040 126040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 126555 126555 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43134 SAMTools SNP 127037 127037 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold43134 SAMTools SNP 127071 127071 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C246:59 scaffold43134 SAMTools SNP 127543 127543 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43134 SAMTools SNP 128154 128154 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 128229 128229 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 128442 128442 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43134 SAMTools SNP 128468 128468 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43134 SAMTools SNP 128490 128490 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43134 SAMTools SNP 129075 129075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43134 SAMTools SNP 129101 129101 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.57%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43134 SAMTools SNP 130169 130169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C35%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43134 SAMTools SNP 130181 130181 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C31%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C6%2C0:10 scaffold43134 SAMTools SNP 130225 130225 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43134 SAMTools SNP 130816 130816 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43134 SAMTools SNP 130833 130833 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.16%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C203:99 scaffold43134 SAMTools SNP 130888 130888 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43134 SAMTools SNP 131052 131052 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C150:99 scaffold43134 SAMTools SNP 131067 131067 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43134 SAMTools SNP 131095 131095 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43134 SAMTools SNP 131139 131139 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43134 SAMTools SNP 132675 132675 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.43%2C0.072%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C135:95 scaffold43134 SAMTools SNP 141141 141141 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold43134 SAMTools SNP 145703 145703 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43134 SAMTools SNP 145712 145712 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43134 SAMTools SNP 151282 151282 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D44%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C42%2C0:81 scaffold43134 SAMTools SNP 151961 151961 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 152381 152381 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold43134 SAMTools SNP 152387 152387 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D46%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C218:33 scaffold43134 SAMTools SNP 152432 152432 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D46%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C219:37 scaffold43134 SAMTools SNP 152436 152436 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C15%3BMQ%3D46%3BFQ%3D78%3BPV4%3D1%2C1%2C0.18%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C105:99 scaffold43134 SAMTools SNP 152953 152953 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43134 SAMTools SNP 152983 152983 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 153069 153069 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 153082 153082 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43134 SAMTools SNP 153759 153759 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43134 SAMTools SNP 153788 153788 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43134 SAMTools SNP 153829 153829 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold43134 SAMTools SNP 153848 153848 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43134 SAMTools SNP 155692 155692 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.22%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43134 SAMTools SNP 155746 155746 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.11%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C179:99 scaffold43134 SAMTools SNP 157191 157191 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.49%2C0.29%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C153:99 scaffold43134 SAMTools SNP 157213 157213 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0061%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C201:33 scaffold43134 SAMTools SNP 157700 157700 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43134 SAMTools SNP 157714 157714 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold43134 SAMTools SNP 158998 158998 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold43134 SAMTools SNP 159108 159108 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C15%2C0:27 scaffold43134 SAMTools SNP 159118 159118 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43134 SAMTools SNP 159496 159496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43134 SAMTools SNP 159830 159830 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43134 SAMTools SNP 159946 159946 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43134 SAMTools SNP 160169 160169 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43134 SAMTools SNP 160266 160266 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.52%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43134 SAMTools SNP 160601 160601 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold43134 SAMTools SNP 160607 160607 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43134 SAMTools SNP 160615 160615 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43134 SAMTools SNP 160647 160647 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43134 SAMTools SNP 161095 161095 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold43134 SAMTools SNP 161632 161632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43134 SAMTools SNP 162009 162009 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43134 SAMTools SNP 162040 162040 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43134 SAMTools SNP 162848 162848 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 163472 163472 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 164300 164300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43134 SAMTools SNP 210361 210361 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold43134 SAMTools SNP 210670 210670 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C253:69 scaffold43136 SAMTools SNP 1007 1007 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43136 SAMTools SNP 63743 63743 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold43136 SAMTools SNP 63922 63922 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.18%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold43136 SAMTools SNP 63931 63931 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43136 SAMTools SNP 63958 63958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43136 SAMTools SNP 63966 63966 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43136 SAMTools SNP 63979 63979 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C1%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.64%2C0.29%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43136 SAMTools SNP 64820 64820 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold43136 SAMTools SNP 65435 65435 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold43136 SAMTools SNP 65714 65714 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43136 SAMTools SNP 65756 65756 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold43136 SAMTools SNP 65770 65770 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43136 SAMTools SNP 65774 65774 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43136 SAMTools SNP 65843 65843 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.087%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C173:99 scaffold43136 SAMTools SNP 66410 66410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43136 SAMTools SNP 66446 66446 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.3%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43136 SAMTools SNP 67991 67991 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43136 SAMTools SNP 68473 68473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43136 SAMTools SNP 68485 68485 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C51:54 scaffold43136 SAMTools SNP 68503 68503 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold43136 SAMTools SNP 68557 68557 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold43136 SAMTools SNP 68727 68727 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43136 SAMTools SNP 90441 90441 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43136 SAMTools SNP 90748 90748 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold43136 SAMTools SNP 207015 207015 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold43136 SAMTools SNP 212776 212776 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.035%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold43136 SAMTools SNP 212856 212856 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C51%2C0:99 scaffold43136 SAMTools SNP 213152 213152 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C63:66 scaffold43136 SAMTools SNP 213684 213684 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43136 SAMTools SNP 213690 213690 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43136 SAMTools SNP 221493 221493 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43146 SAMTools SNP 193 193 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 209 209 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 316 316 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 45602 45602 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43146 SAMTools SNP 52609 52609 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43146 SAMTools SNP 52627 52627 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43146 SAMTools SNP 53487 53487 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43146 SAMTools SNP 53503 53503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43146 SAMTools SNP 54829 54829 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold43146 SAMTools SNP 62538 62538 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold43146 SAMTools SNP 63719 63719 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C71:33 scaffold43146 SAMTools SNP 65599 65599 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43146 SAMTools SNP 67503 67503 12.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold43146 SAMTools SNP 69707 69707 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 98996 98996 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold43146 SAMTools SNP 109347 109347 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 120410 120410 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 124079 124079 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 124440 124440 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 124459 124459 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 126888 126888 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C96%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43146 SAMTools SNP 126896 126896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C68%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43146 SAMTools SNP 148198 148198 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold43146 SAMTools SNP 148243 148243 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43146 SAMTools SNP 148571 148571 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 148579 148579 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 172001 172001 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43146 SAMTools SNP 173876 173876 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43146 SAMTools SNP 173991 173991 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43146 SAMTools SNP 174648 174648 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold43146 SAMTools SNP 183617 183617 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43146 SAMTools SNP 183827 183827 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43146 SAMTools SNP 185663 185663 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43150 SAMTools SNP 652 652 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 723 723 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 1709 1709 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.46%2C4e-08%2C1%2C2.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C104:53 scaffold43150 SAMTools SNP 5846 5846 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43150 SAMTools SNP 5859 5859 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43150 SAMTools SNP 6030 6030 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 6053 6053 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 6683 6683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 7124 7124 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 7163 7163 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43150 SAMTools SNP 7619 7619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43150 SAMTools SNP 7651 7651 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C73:46 scaffold43150 SAMTools SNP 7825 7825 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 7831 7831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43150 SAMTools SNP 7849 7849 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43150 SAMTools SNP 8309 8309 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C79%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold43150 SAMTools SNP 9508 9508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43150 SAMTools SNP 9540 9540 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 10002 10002 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43150 SAMTools SNP 10135 10135 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C31%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C214%2C0:99 scaffold43150 SAMTools SNP 10240 10240 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 10495 10495 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C12%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 10818 10818 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold43150 SAMTools SNP 10982 10982 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold43150 SAMTools SNP 11115 11115 19.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43150 SAMTools SNP 11711 11711 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43150 SAMTools SNP 11752 11752 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43150 SAMTools SNP 12909 12909 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C36%2C24%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 12930 12930 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C68%2C0%2C28%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43150 SAMTools SNP 14861 14861 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C13%2C20%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 14915 14915 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C1%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43150 SAMTools SNP 19836 19836 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 22895 22895 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C84%2C0:99 scaffold43150 SAMTools SNP 23027 23027 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C72%2C0:99 scaffold43150 SAMTools SNP 23371 23371 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C9%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.07%2C3.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43150 SAMTools SNP 23414 23414 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.16%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43150 SAMTools SNP 50199 50199 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 62049 62049 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold43150 SAMTools SNP 81718 81718 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.8e-09%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43150 SAMTools SNP 88984 88984 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43150 SAMTools SNP 89017 89017 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C104:99 scaffold43150 SAMTools SNP 89848 89848 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold43150 SAMTools SNP 102551 102551 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0067%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43150 SAMTools SNP 102561 102561 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C12%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.43%2C0.0018%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold43150 SAMTools SNP 110848 110848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43150 SAMTools SNP 111044 111044 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C70%2C0%2C51%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0067%2C5.9e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43150 SAMTools SNP 111467 111467 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C255%2C0:99 scaffold43150 SAMTools SNP 113397 113397 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C7.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C129:99 scaffold43150 SAMTools SNP 121747 121747 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.21%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold43150 SAMTools SNP 122299 122299 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold43150 SAMTools SNP 122757 122757 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43150 SAMTools SNP 123729 123729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43150 SAMTools SNP 127567 127567 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.25%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C30:29 scaffold43150 SAMTools SNP 128332 128332 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43150 SAMTools SNP 129226 129226 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43150 SAMTools SNP 130378 130378 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43150 SAMTools SNP 130422 130422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 138741 138741 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43150 SAMTools SNP 139501 139501 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43150 SAMTools SNP 139527 139527 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold43150 SAMTools SNP 139701 139701 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43150 SAMTools SNP 156084 156084 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43150 SAMTools SNP 156361 156361 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 156415 156415 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 158162 158162 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 159015 159015 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 165989 165989 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.45%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold43150 SAMTools SNP 165995 165995 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43150 SAMTools SNP 166013 166013 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold43150 SAMTools SNP 166424 166424 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43150 SAMTools SNP 166997 166997 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 167944 167944 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43150 SAMTools SNP 168191 168191 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43150 SAMTools SNP 168218 168218 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43150 SAMTools SNP 168442 168442 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43150 SAMTools SNP 169321 169321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 169381 169381 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 169717 169717 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 169762 169762 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.054%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43150 SAMTools SNP 169792 169792 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold43150 SAMTools SNP 169903 169903 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43150 SAMTools SNP 169906 169906 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43150 SAMTools SNP 170032 170032 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43150 SAMTools SNP 170596 170596 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43150 SAMTools SNP 170789 170789 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43150 SAMTools SNP 170833 170833 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43150 SAMTools SNP 171175 171175 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0088%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 171925 171925 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43150 SAMTools SNP 172735 172735 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 173004 173004 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 173690 173690 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 174199 174199 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 174229 174229 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 174984 174984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 175675 175675 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 175711 175711 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 175902 175902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 176605 176605 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43150 SAMTools SNP 181793 181793 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C234:43 scaffold43150 SAMTools SNP 182128 182128 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C19%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C6.5e-23%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C180:99 scaffold43150 SAMTools SNP 183023 183023 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43150 SAMTools SNP 183798 183798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold43150 SAMTools SNP 183819 183819 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43150 SAMTools SNP 183834 183834 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C0.089%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43150 SAMTools SNP 183861 183861 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43150 SAMTools SNP 184359 184359 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43150 SAMTools SNP 184620 184620 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43150 SAMTools SNP 184668 184668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 184687 184687 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0072%2C0.46%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43150 SAMTools SNP 184689 184689 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00025%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43150 SAMTools SNP 185540 185540 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 185558 185558 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43150 SAMTools SNP 186021 186021 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold43150 SAMTools SNP 186027 186027 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.47%2C0.095%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C166:47 scaffold43150 SAMTools SNP 186060 186060 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43150 SAMTools SNP 186345 186345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 186750 186750 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 186774 186774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43150 SAMTools SNP 186834 186834 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43150 SAMTools SNP 186867 186867 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C143:45 scaffold43150 SAMTools SNP 187108 187108 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43150 SAMTools SNP 187111 187111 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 187258 187258 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43150 SAMTools SNP 187830 187830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 187834 187834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 187891 187891 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C8.9e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 188444 188444 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold43150 SAMTools SNP 188785 188785 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C210:99 scaffold43150 SAMTools SNP 188862 188862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43150 SAMTools SNP 189211 189211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43150 SAMTools SNP 189265 189265 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C169:99 scaffold43150 SAMTools SNP 190080 190080 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.02%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C217:39 scaffold43150 SAMTools SNP 190796 190796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 190814 190814 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43150 SAMTools SNP 191968 191968 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43150 SAMTools SNP 192011 192011 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43150 SAMTools SNP 192035 192035 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 192399 192399 19.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43150 SAMTools SNP 192408 192408 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 192432 192432 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C186:99 scaffold43150 SAMTools SNP 192937 192937 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.085%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43150 SAMTools SNP 192956 192956 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43150 SAMTools SNP 192973 192973 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43150 SAMTools SNP 193721 193721 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 193739 193739 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43150 SAMTools SNP 193795 193795 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43150 SAMTools SNP 194053 194053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold43150 SAMTools SNP 194080 194080 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43150 SAMTools SNP 194086 194086 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43150 SAMTools SNP 194962 194962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold43150 SAMTools SNP 195022 195022 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold43150 SAMTools SNP 195109 195109 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43150 SAMTools SNP 195616 195616 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 195658 195658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43150 SAMTools SNP 196012 196012 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43150 SAMTools SNP 196063 196063 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold43150 SAMTools SNP 196291 196291 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43150 SAMTools SNP 196318 196318 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 196396 196396 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold43150 SAMTools SNP 196420 196420 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43150 SAMTools SNP 196798 196798 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43150 SAMTools SNP 197815 197815 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C0.15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0:39 scaffold43150 SAMTools SNP 198728 198728 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.015%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43150 SAMTools SNP 198936 198936 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 199152 199152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 199202 199202 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43150 SAMTools SNP 199657 199657 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C23%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D4.6e-05%2C9e-10%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43150 SAMTools SNP 199680 199680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.045%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 199691 199691 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43150 SAMTools SNP 200922 200922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43150 SAMTools SNP 200959 200959 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold43150 SAMTools SNP 201330 201330 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43150 SAMTools SNP 201417 201417 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C71:34 scaffold43150 SAMTools SNP 201534 201534 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D5.6e-06%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C140:99 scaffold43150 SAMTools SNP 201844 201844 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43150 SAMTools SNP 202502 202502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43150 SAMTools SNP 202943 202943 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C127:74 scaffold43150 SAMTools SNP 202948 202948 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43150 SAMTools SNP 202973 202973 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.33%2C0.00095%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C82:51 scaffold43150 SAMTools SNP 203378 203378 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43150 SAMTools SNP 203567 203567 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 203579 203579 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43150 SAMTools SNP 204696 204696 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.19%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43150 SAMTools SNP 204813 204813 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C39%2C0:75 scaffold43150 SAMTools SNP 205190 205190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43150 SAMTools SNP 206727 206727 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 207086 207086 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C39%2C19%2C13%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.086%2C1.2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43150 SAMTools SNP 207143 207143 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 207281 207281 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43150 SAMTools SNP 207422 207422 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43150 SAMTools SNP 207859 207859 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43150 SAMTools SNP 207868 207868 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43150 SAMTools SNP 207892 207892 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43150 SAMTools SNP 210988 210988 39 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C12%2C68%2C0%2C65:16 scaffold43150 SAMTools SNP 211037 211037 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43150 SAMTools SNP 211049 211049 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43150 SAMTools SNP 211229 211229 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43150 SAMTools SNP 211254 211254 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43150 SAMTools SNP 211691 211691 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43150 SAMTools SNP 211775 211775 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.16%2C2.2e-17%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43150 SAMTools SNP 211875 211875 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C69%2C0:99 scaffold43150 SAMTools SNP 212015 212015 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43150 SAMTools SNP 212030 212030 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43150 SAMTools SNP 212589 212589 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43150 SAMTools SNP 212622 212622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.026%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold43150 SAMTools SNP 212878 212878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43150 SAMTools SNP 213069 213069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C9.2e-47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43150 SAMTools SNP 213532 213532 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43150 SAMTools SNP 213662 213662 38.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C184%2C205%2C0%2C184:39 scaffold43150 SAMTools SNP 214334 214334 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43150 SAMTools SNP 214614 214614 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43150 SAMTools SNP 214685 214685 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43150 SAMTools SNP 214716 214716 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43150 SAMTools SNP 215256 215256 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C36%2C0:69 scaffold43150 SAMTools SNP 215265 215265 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C0%2C0:3 scaffold43150 SAMTools SNP 217001 217001 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C8%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.011%2C6.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43150 SAMTools SNP 217520 217520 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold43150 SAMTools SNP 217535 217535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43150 SAMTools SNP 217633 217633 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.47%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C238:99 scaffold43150 SAMTools SNP 218029 218029 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43150 SAMTools SNP 218885 218885 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C11%2C13%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.74%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43150 SAMTools SNP 219387 219387 67.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold43170 SAMTools SNP 39 39 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43170 SAMTools SNP 798 798 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C1%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.65%2C7.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43170 SAMTools SNP 1908 1908 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 1923 1923 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 3614 3614 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43170 SAMTools SNP 4138 4138 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C0.14%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold43170 SAMTools SNP 4338 4338 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43170 SAMTools SNP 4661 4661 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43170 SAMTools SNP 5818 5818 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.063%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold43170 SAMTools SNP 5858 5858 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43170 SAMTools SNP 6839 6839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 7590 7590 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 7640 7640 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 7795 7795 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 24156 24156 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43170 SAMTools SNP 24622 24622 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 25303 25303 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43170 SAMTools SNP 25553 25553 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43170 SAMTools SNP 25564 25564 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43170 SAMTools SNP 25573 25573 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43170 SAMTools SNP 34730 34730 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43170 SAMTools SNP 35078 35078 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43170 SAMTools SNP 35086 35086 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43170 SAMTools SNP 35334 35334 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 35408 35408 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C66%2C0:99 scaffold43170 SAMTools SNP 35471 35471 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C145:99 scaffold43170 SAMTools SNP 35477 35477 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.00018%2C1%2C1%2C6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43170 SAMTools SNP 35483 35483 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C4%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.024%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43170 SAMTools SNP 36559 36559 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 36572 36572 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 36585 36585 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43170 SAMTools SNP 37848 37848 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 38092 38092 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43170 SAMTools SNP 38269 38269 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C96:99 scaffold43170 SAMTools SNP 38327 38327 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold43170 SAMTools SNP 40219 40219 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43170 SAMTools SNP 40328 40328 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43170 SAMTools SNP 40913 40913 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43170 SAMTools SNP 41242 41242 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold43170 SAMTools SNP 41314 41314 96.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold43170 SAMTools SNP 42253 42253 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 42408 42408 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0007%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C153:99 scaffold43170 SAMTools SNP 42966 42966 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43170 SAMTools SNP 43234 43234 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43170 SAMTools SNP 64153 64153 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43170 SAMTools SNP 64176 64176 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C102%2C0:99 scaffold43170 SAMTools SNP 65174 65174 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43170 SAMTools SNP 65407 65407 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C4%3BMQ%3D43%3BFQ%3D128%3BPV4%3D0.24%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold43170 SAMTools SNP 65434 65434 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C4%3BMQ%3D45%3BFQ%3D181%3BPV4%3D0.3%2C0.029%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C208:99 scaffold43170 SAMTools SNP 65441 65441 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C0%3BMQ%3D46%3BFQ%3D15.1%3BPV4%3D0.52%2C0.065%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43170 SAMTools SNP 65713 65713 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43170 SAMTools SNP 66251 66251 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43170 SAMTools SNP 66260 66260 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 66283 66283 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 66308 66308 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C22%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43170 SAMTools SNP 67167 67167 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43170 SAMTools SNP 67197 67197 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 67248 67248 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43170 SAMTools SNP 67658 67658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43170 SAMTools SNP 67667 67667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43170 SAMTools SNP 67762 67762 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C19%2C24%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold43170 SAMTools SNP 68790 68790 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C18%2C0:33 scaffold43170 SAMTools SNP 69669 69669 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C4%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.039%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C7%2C255:53 scaffold43170 SAMTools SNP 69746 69746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C51%2C2%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.15%2C0.25%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold43170 SAMTools SNP 71912 71912 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C54%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C138:99 scaffold43170 SAMTools SNP 71933 71933 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C57%2C0%2C17%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.064%2C0.43%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43170 SAMTools SNP 72178 72178 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.017%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43170 SAMTools SNP 72469 72469 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43170 SAMTools SNP 72471 72471 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43170 SAMTools SNP 72524 72524 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C24%2C75%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 72995 72995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 73524 73524 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C56%3BMQ%3D43%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43170 SAMTools SNP 76614 76614 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C23%3BMQ%3D42%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43170 SAMTools SNP 109839 109839 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C24%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0071%2C1%2C1%2C9.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold43170 SAMTools SNP 109900 109900 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C3%2C109%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 110665 110665 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C117%2C2%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 110718 110718 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C97%2C2%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.26%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 110950 110950 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D41.4%3BPV4%3D1%2C1.4e-06%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C77:71 scaffold43170 SAMTools SNP 110962 110962 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C125:71 scaffold43170 SAMTools SNP 112053 112053 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold43170 SAMTools SNP 112498 112498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 112522 112522 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43170 SAMTools SNP 113486 113486 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.043%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43170 SAMTools SNP 113518 113518 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43170 SAMTools SNP 113764 113764 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold43170 SAMTools SNP 114265 114265 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43170 SAMTools SNP 114870 114870 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43170 SAMTools SNP 114974 114974 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43170 SAMTools SNP 115334 115334 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C162:99 scaffold43170 SAMTools SNP 115482 115482 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43170 SAMTools SNP 128564 128564 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.23%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C71:74 scaffold43170 SAMTools SNP 128735 128735 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold43170 SAMTools SNP 128822 128822 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 129012 129012 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43170 SAMTools SNP 129045 129045 88 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold43170 SAMTools SNP 129350 129350 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 129425 129425 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43170 SAMTools SNP 129440 129440 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold43170 SAMTools SNP 129648 129648 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold43170 SAMTools SNP 129759 129759 53.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C5:8 scaffold43170 SAMTools SNP 131924 131924 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43170 SAMTools SNP 131933 131933 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 131990 131990 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43170 SAMTools SNP 132020 132020 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43170 SAMTools SNP 132206 132206 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43170 SAMTools SNP 132244 132244 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C11%2C11%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.05%2C0.083%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold43170 SAMTools SNP 132527 132527 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43170 SAMTools SNP 132581 132581 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43170 SAMTools SNP 132763 132763 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 132777 132777 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43170 SAMTools SNP 132837 132837 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D1%2C0.36%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold43170 SAMTools SNP 133394 133394 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C64%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D1%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold43170 SAMTools SNP 133536 133536 45.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold43170 SAMTools SNP 142936 142936 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 144253 144253 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 146136 146136 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43170 SAMTools SNP 146458 146458 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43170 SAMTools SNP 147279 147279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C0.37%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold43170 SAMTools SNP 148322 148322 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43170 SAMTools SNP 154998 154998 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold43170 SAMTools SNP 162424 162424 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0055%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43170 SAMTools SNP 162426 162426 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold43170 SAMTools SNP 162486 162486 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43170 SAMTools SNP 162526 162526 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C38:41 scaffold43170 SAMTools SNP 166292 166292 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C18%2C0:33 scaffold43170 SAMTools SNP 167340 167340 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C13%2C27%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C2.1e-13%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43170 SAMTools SNP 167416 167416 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C103%2C8%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 169019 169019 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 169270 169270 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C35%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.026%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43170 SAMTools SNP 169285 169285 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D6.2e-06%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43170 SAMTools SNP 169301 169301 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 170043 170043 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0016%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 170082 170082 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.28%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43170 SAMTools SNP 170289 170289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43170 SAMTools SNP 170319 170319 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0022%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold43170 SAMTools SNP 170323 170323 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43170 SAMTools SNP 170472 170472 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43170 SAMTools SNP 173157 173157 29.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold43170 SAMTools SNP 173618 173618 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold43170 SAMTools SNP 173959 173959 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C4.6e-21%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C193:69 scaffold43170 SAMTools SNP 174044 174044 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C14%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.8e-22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C241:54 scaffold43170 SAMTools SNP 174051 174051 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 175446 175446 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.62%2C0.37%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43170 SAMTools SNP 175459 175459 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.0072%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 176740 176740 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 176842 176842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 177518 177518 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C14%2C43%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 177938 177938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 177954 177954 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43170 SAMTools SNP 177977 177977 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 178698 178698 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43170 SAMTools SNP 178963 178963 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43170 SAMTools SNP 179278 179278 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 180504 180504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43170 SAMTools SNP 182019 182019 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.16%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43170 SAMTools SNP 182022 182022 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.17%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43170 SAMTools SNP 182076 182076 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43170 SAMTools SNP 182418 182418 96 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43170 SAMTools SNP 182454 182454 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold43170 SAMTools SNP 183700 183700 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43170 SAMTools SNP 183780 183780 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43170 SAMTools SNP 183783 183783 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C240:99 scaffold43170 SAMTools SNP 183789 183789 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43170 SAMTools SNP 184006 184006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 184036 184036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C14%2C44%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 184054 184054 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C9%2C96%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 184180 184180 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C217%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43170 SAMTools SNP 184772 184772 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43170 SAMTools SNP 184787 184787 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43170 SAMTools SNP 184808 184808 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43170 SAMTools SNP 185379 185379 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43170 SAMTools SNP 185409 185409 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C7%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43170 SAMTools SNP 189094 189094 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0023%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43170 SAMTools SNP 189133 189133 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold43170 SAMTools SNP 189674 189674 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43170 SAMTools SNP 189860 189860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43170 SAMTools SNP 190509 190509 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43170 SAMTools SNP 193787 193787 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.17%2C0.18%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C156:99 scaffold43170 SAMTools SNP 194880 194880 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43170 SAMTools SNP 195713 195713 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C152:40 scaffold43170 SAMTools SNP 206508 206508 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold43170 SAMTools SNP 214740 214740 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43170 SAMTools SNP 214776 214776 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43170 SAMTools SNP 215252 215252 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43170 SAMTools SNP 215513 215513 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43170 SAMTools SNP 215949 215949 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.32%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C191:99 scaffold43170 SAMTools SNP 216219 216219 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.27%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C185:99 scaffold43170 SAMTools SNP 216288 216288 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold43170 SAMTools SNP 216297 216297 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43170 SAMTools SNP 216802 216802 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.067%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43170 SAMTools SNP 216835 216835 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43170 SAMTools SNP 220467 220467 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43170 SAMTools SNP 223211 223211 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D30.8%3BPV4%3D0.1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C64:61 scaffold43182 SAMTools SNP 222520 222520 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43182 SAMTools SNP 223257 223257 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold43184 SAMTools SNP 15464 15464 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 15484 15484 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43184 SAMTools SNP 15541 15541 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.3%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43184 SAMTools SNP 15734 15734 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C225:68 scaffold43184 SAMTools SNP 18672 18672 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43184 SAMTools SNP 18684 18684 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43184 SAMTools SNP 25424 25424 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold43184 SAMTools SNP 25804 25804 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold43184 SAMTools SNP 26203 26203 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43184 SAMTools SNP 26730 26730 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold43184 SAMTools SNP 27067 27067 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43184 SAMTools SNP 27081 27081 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43184 SAMTools SNP 27170 27170 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 27627 27627 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43184 SAMTools SNP 27645 27645 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43184 SAMTools SNP 34423 34423 43.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold43184 SAMTools SNP 36149 36149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 36417 36417 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 39032 39032 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C54%2C0:99 scaffold43184 SAMTools SNP 39129 39129 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C42%2C0:81 scaffold43184 SAMTools SNP 42397 42397 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.28%2C0.24%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43184 SAMTools SNP 44022 44022 23.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold43184 SAMTools SNP 44417 44417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C15%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43184 SAMTools SNP 46396 46396 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43184 SAMTools SNP 47250 47250 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold43184 SAMTools SNP 47355 47355 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43184 SAMTools SNP 47385 47385 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43184 SAMTools SNP 48690 48690 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.079%2C0.0021%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43184 SAMTools SNP 48729 48729 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43184 SAMTools SNP 50425 50425 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43184 SAMTools SNP 50985 50985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C33%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43184 SAMTools SNP 51001 51001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C21%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43184 SAMTools SNP 51066 51066 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.49%2C0.00023%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43184 SAMTools SNP 51169 51169 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43184 SAMTools SNP 51184 51184 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43184 SAMTools SNP 63480 63480 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C16%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold43184 SAMTools SNP 63483 63483 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00011%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold43184 SAMTools SNP 64317 64317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43184 SAMTools SNP 71095 71095 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0069%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43184 SAMTools SNP 71746 71746 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C12%2C0:21 scaffold43184 SAMTools SNP 72105 72105 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.26%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold43184 SAMTools SNP 72161 72161 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43184 SAMTools SNP 72188 72188 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold43184 SAMTools SNP 72506 72506 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43184 SAMTools SNP 73280 73280 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold43184 SAMTools SNP 74086 74086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 74100 74100 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43184 SAMTools SNP 75859 75859 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C115:99 scaffold43184 SAMTools SNP 75909 75909 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43184 SAMTools SNP 75930 75930 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C116:99 scaffold43184 SAMTools SNP 76231 76231 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43184 SAMTools SNP 76236 76236 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold43184 SAMTools SNP 76299 76299 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43184 SAMTools SNP 78048 78048 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43184 SAMTools SNP 78531 78531 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43184 SAMTools SNP 78561 78561 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.028%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43184 SAMTools SNP 82408 82408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 82447 82447 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43184 SAMTools SNP 82483 82483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 86138 86138 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43184 SAMTools SNP 86192 86192 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43184 SAMTools SNP 86877 86877 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43184 SAMTools SNP 86907 86907 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43184 SAMTools SNP 92337 92337 20.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold43184 SAMTools SNP 92588 92588 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C88:43 scaffold43184 SAMTools SNP 93326 93326 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43184 SAMTools SNP 94280 94280 46.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold43184 SAMTools SNP 94382 94382 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C42%2C16%2C31%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.68%2C2.8e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold43184 SAMTools SNP 95576 95576 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C99%2C0:99 scaffold43184 SAMTools SNP 118385 118385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43184 SAMTools SNP 118395 118395 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43184 SAMTools SNP 122533 122533 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C2%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.28%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43184 SAMTools SNP 122584 122584 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C144:99 scaffold43184 SAMTools SNP 122635 122635 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold43184 SAMTools SNP 123614 123614 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43184 SAMTools SNP 123623 123623 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43184 SAMTools SNP 123656 123656 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43184 SAMTools SNP 125487 125487 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold43184 SAMTools SNP 149827 149827 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.018%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43184 SAMTools SNP 164544 164544 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43184 SAMTools SNP 166457 166457 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold43184 SAMTools SNP 166472 166472 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43184 SAMTools SNP 166499 166499 55.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold43184 SAMTools SNP 168666 168666 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C4%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43184 SAMTools SNP 171295 171295 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold43184 SAMTools SNP 171312 171312 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold43184 SAMTools SNP 172250 172250 18.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43184 SAMTools SNP 172392 172392 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D817%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C221%2C218%2C228%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C3.1e-60%2C0.16%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43184 SAMTools SNP 175623 175623 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C176%2C9%2C84%3BMQ%3D49%3BFQ%3D158%3BPV4%3D0.48%2C2.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold43184 SAMTools SNP 175626 175626 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C85%2C1%2C65%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.048%2C1%2C0.0018%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43184 SAMTools SNP 178392 178392 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43184 SAMTools SNP 178742 178742 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43184 SAMTools SNP 178932 178932 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C225:48 scaffold43184 SAMTools SNP 180036 180036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43184 SAMTools SNP 181041 181041 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43184 SAMTools SNP 181122 181122 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C142%2C4%2C16%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.028%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43184 SAMTools SNP 181134 181134 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C149%2C5%2C19%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43184 SAMTools SNP 181549 181549 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C6%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D8.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43184 SAMTools SNP 181567 181567 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.002%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43184 SAMTools SNP 181989 181989 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold43184 SAMTools SNP 182024 182024 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold43184 SAMTools SNP 192498 192498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C37%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C2.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43184 SAMTools SNP 193620 193620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C65%2C0%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43184 SAMTools SNP 193638 193638 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C114%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43184 SAMTools SNP 193710 193710 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43184 SAMTools SNP 194069 194069 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43184 SAMTools SNP 216474 216474 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43194 SAMTools SNP 5168 5168 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 5253 5253 75.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold43194 SAMTools SNP 11127 11127 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43194 SAMTools SNP 11144 11144 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43194 SAMTools SNP 11332 11332 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43194 SAMTools SNP 11397 11397 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C24%2C0:45 scaffold43194 SAMTools SNP 11945 11945 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 11992 11992 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 11993 11993 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 13342 13342 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43194 SAMTools SNP 13351 13351 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold43194 SAMTools SNP 13383 13383 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43194 SAMTools SNP 14555 14555 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43194 SAMTools SNP 14578 14578 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43194 SAMTools SNP 33195 33195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43194 SAMTools SNP 33232 33232 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43194 SAMTools SNP 33428 33428 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C33%2C0:63 scaffold43194 SAMTools SNP 34355 34355 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43194 SAMTools SNP 34358 34358 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43194 SAMTools SNP 34983 34983 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43194 SAMTools SNP 41765 41765 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43194 SAMTools SNP 41773 41773 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43194 SAMTools SNP 41946 41946 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C174:39 scaffold43194 SAMTools SNP 42580 42580 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43194 SAMTools SNP 42614 42614 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43194 SAMTools SNP 42685 42685 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 43117 43117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43194 SAMTools SNP 43643 43643 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C193:99 scaffold43194 SAMTools SNP 43700 43700 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C216:99 scaffold43194 SAMTools SNP 43745 43745 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold43194 SAMTools SNP 44795 44795 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold43194 SAMTools SNP 44831 44831 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 51210 51210 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold43194 SAMTools SNP 54905 54905 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 55736 55736 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43194 SAMTools SNP 56468 56468 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C66%2C0:97 scaffold43194 SAMTools SNP 61386 61386 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C3.8e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C60:63 scaffold43194 SAMTools SNP 61422 61422 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43194 SAMTools SNP 61504 61504 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C80:50 scaffold43194 SAMTools SNP 62157 62157 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C107:99 scaffold43194 SAMTools SNP 62184 62184 58.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold43194 SAMTools SNP 62808 62808 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold43194 SAMTools SNP 68788 68788 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43194 SAMTools SNP 72722 72722 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 72785 72785 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43194 SAMTools SNP 72932 72932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43194 SAMTools SNP 72965 72965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43194 SAMTools SNP 107077 107077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C89%2C16%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 107314 107314 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C88%2C15%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 107347 107347 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 108583 108583 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold43194 SAMTools SNP 111271 111271 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C60:63 scaffold43194 SAMTools SNP 111846 111846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43194 SAMTools SNP 116085 116085 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 116166 116166 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C41%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43194 SAMTools SNP 116267 116267 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C45%2C0:87 scaffold43194 SAMTools SNP 116439 116439 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C54%2C0%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43194 SAMTools SNP 128924 128924 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.33%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C80:60 scaffold43194 SAMTools SNP 132441 132441 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 132461 132461 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43194 SAMTools SNP 132468 132468 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43194 SAMTools SNP 132924 132924 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold43194 SAMTools SNP 132984 132984 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43194 SAMTools SNP 133831 133831 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.0015%2C4.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43194 SAMTools SNP 133850 133850 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43194 SAMTools SNP 133887 133887 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold43194 SAMTools SNP 133888 133888 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43194 SAMTools SNP 134300 134300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43194 SAMTools SNP 134361 134361 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43194 SAMTools SNP 136594 136594 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C72%2C0:99 scaffold43194 SAMTools SNP 137759 137759 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43194 SAMTools SNP 137773 137773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43194 SAMTools SNP 138160 138160 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold43194 SAMTools SNP 138189 138189 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43194 SAMTools SNP 138450 138450 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold43194 SAMTools SNP 139376 139376 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43194 SAMTools SNP 139409 139409 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 140513 140513 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 140567 140567 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C20%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C208:99 scaffold43194 SAMTools SNP 141304 141304 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C250:99 scaffold43194 SAMTools SNP 141307 141307 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C250:99 scaffold43194 SAMTools SNP 141319 141319 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C204:99 scaffold43194 SAMTools SNP 141325 141325 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold43194 SAMTools SNP 141360 141360 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 141907 141907 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 141998 141998 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43194 SAMTools SNP 142033 142033 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C19%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C30:33 scaffold43194 SAMTools SNP 145912 145912 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold43194 SAMTools SNP 145951 145951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43194 SAMTools SNP 146238 146238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold43194 SAMTools SNP 146256 146256 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.087%2C0.48%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43194 SAMTools SNP 146721 146721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43194 SAMTools SNP 147411 147411 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43194 SAMTools SNP 147447 147447 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43194 SAMTools SNP 147615 147615 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold43194 SAMTools SNP 147675 147675 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43194 SAMTools SNP 148095 148095 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 150916 150916 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 150934 150934 71.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D0.2%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C8%2C0:14 scaffold43194 SAMTools SNP 151003 151003 88.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C8%2C0:14 scaffold43194 SAMTools SNP 151737 151737 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold43194 SAMTools SNP 151803 151803 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 152264 152264 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 152810 152810 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold43194 SAMTools SNP 152834 152834 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold43194 SAMTools SNP 153396 153396 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43194 SAMTools SNP 156451 156451 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43194 SAMTools SNP 156892 156892 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43194 SAMTools SNP 157494 157494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C101%2C14%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43194 SAMTools SNP 158368 158368 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold43194 SAMTools SNP 158764 158764 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.079%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold43194 SAMTools SNP 195906 195906 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 196556 196556 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43194 SAMTools SNP 197206 197206 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43194 SAMTools SNP 197338 197338 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43194 SAMTools SNP 197371 197371 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43194 SAMTools SNP 197654 197654 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold43194 SAMTools SNP 212827 212827 5.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C12%2C0:12 scaffold43194 SAMTools SNP 213215 213215 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C4.6e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C10%2C0:17 scaffold432 SAMTools SNP 2574 2574 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 5386 5386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 8087 8087 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 8630 8630 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 8680 8680 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 8968 8968 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C25%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0073%2C4.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C68:71 scaffold432 SAMTools SNP 9100 9100 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C16%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.21%2C3.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold432 SAMTools SNP 9873 9873 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold432 SAMTools SNP 9888 9888 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold432 SAMTools SNP 14402 14402 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 14420 14420 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold432 SAMTools SNP 14575 14575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold432 SAMTools SNP 19006 19006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C22%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold432 SAMTools SNP 19051 19051 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C17%2C11%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.088%2C0.00026%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold432 SAMTools SNP 19057 19057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C66%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 19791 19791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 19818 19818 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 21017 21017 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C82%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 21084 21084 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C16%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D2.4e-12%2C0.096%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C250:99 scaffold432 SAMTools SNP 21260 21260 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold432 SAMTools SNP 21360 21360 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 21364 21364 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 29906 29906 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C37%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 29957 29957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C2%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 30519 30519 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C13%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold432 SAMTools SNP 30537 30537 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C0.0032%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold432 SAMTools SNP 30570 30570 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C56%2C5%2C12%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.77%2C6.2e-33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold432 SAMTools SNP 30660 30660 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C6%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold432 SAMTools SNP 30879 30879 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 30894 30894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 30901 30901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 30981 30981 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold432 SAMTools SNP 30986 30986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold432 SAMTools SNP 31165 31165 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31181 31181 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C10%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D2.5e-05%2C0.061%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold432 SAMTools SNP 31201 31201 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00028%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31222 31222 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C8%2C82%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31396 31396 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C2%2C76%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.00081%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31875 31875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C174%2C42%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31897 31897 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C150%2C22%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 31922 31922 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C163%2C13%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.00092%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 32536 32536 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C1%2C9%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.64%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold432 SAMTools SNP 32556 32556 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C3%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold432 SAMTools SNP 32563 32563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C3%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.02%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold432 SAMTools SNP 32919 32919 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold432 SAMTools SNP 33371 33371 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold432 SAMTools SNP 34096 34096 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 35422 35422 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 37466 37466 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C0%2C9%3BMQ%3D48%3BFQ%3D87%3BPV4%3D0.33%2C0.012%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold432 SAMTools SNP 38097 38097 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold432 SAMTools SNP 38847 38847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C108%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 38911 38911 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold432 SAMTools SNP 70602 70602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 72511 72511 34.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold432 SAMTools SNP 78309 78309 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.14%2C0.32%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold432 SAMTools SNP 78376 78376 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C6%2C11%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C6.2e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold432 SAMTools SNP 101698 101698 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C244:99 scaffold432 SAMTools SNP 101748 101748 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.094%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold432 SAMTools SNP 102508 102508 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C50%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.094%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 102534 102534 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C9%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold432 SAMTools SNP 102550 102550 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C24%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.13%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold432 SAMTools SNP 102559 102559 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C0%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.12%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 102926 102926 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C3%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 103034 103034 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C8%2C23%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.44%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold432 SAMTools SNP 103055 103055 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C5.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 103070 103070 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C58%2C0%2C48%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0026%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold432 SAMTools SNP 106621 106621 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C24%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold432 SAMTools SNP 107000 107000 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold432 SAMTools SNP 108195 108195 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 120347 120347 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C157%2C0:99 scaffold432 SAMTools SNP 120647 120647 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C11%2C29%3BMQ%3D42%3BFQ%3D33%3BPV4%3D0.45%2C4.4e-72%2C2e-08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold432 SAMTools SNP 120689 120689 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C6%2C21%3BMQ%3D38%3BFQ%3D225%3BPV4%3D1%2C1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 120851 120851 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D43%3BFQ%3D6.2%3BPV4%3D1%2C3.9e-05%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C118:31 scaffold432 SAMTools SNP 121142 121142 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 121174 121174 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold432 SAMTools SNP 121186 121186 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold432 SAMTools SNP 121369 121369 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 121496 121496 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 121500 121500 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 133313 133313 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold432 SAMTools SNP 142991 142991 31.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold432 SAMTools SNP 143880 143880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold432 SAMTools SNP 144018 144018 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold432 SAMTools SNP 144037 144037 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold432 SAMTools SNP 144811 144811 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C21%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold432 SAMTools SNP 144868 144868 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold432 SAMTools SNP 144955 144955 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 145004 145004 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.44%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C178:99 scaffold432 SAMTools SNP 145277 145277 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C107:99 scaffold432 SAMTools SNP 145286 145286 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold432 SAMTools SNP 152201 152201 38.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold432 SAMTools SNP 152828 152828 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0225%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold432 SAMTools SNP 152897 152897 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D75.2%3BPV4%3D0.4%2C4.4e-06%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C110:99 scaffold432 SAMTools SNP 153706 153706 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C151:96 scaffold432 SAMTools SNP 154264 154264 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold432 SAMTools SNP 154317 154317 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold432 SAMTools SNP 154648 154648 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold432 SAMTools SNP 154771 154771 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold432 SAMTools SNP 154819 154819 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold432 SAMTools SNP 154840 154840 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.019%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold432 SAMTools SNP 154971 154971 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C122:71 scaffold432 SAMTools SNP 155044 155044 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.52%2C6.2e-17%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold432 SAMTools SNP 155349 155349 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C5:8 scaffold432 SAMTools SNP 155447 155447 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 155896 155896 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold432 SAMTools SNP 156365 156365 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold432 SAMTools SNP 156475 156475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 185998 185998 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C5%3BMQ%3D38%3BFQ%3D92%3BPV4%3D1%2C0.14%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C119:99 scaffold432 SAMTools SNP 187284 187284 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.38%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C147:99 scaffold432 SAMTools SNP 187327 187327 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold432 SAMTools SNP 188237 188237 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold432 SAMTools SNP 189453 189453 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold432 SAMTools SNP 189510 189510 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold432 SAMTools SNP 189576 189576 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C25%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.087%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C253:99 scaffold432 SAMTools SNP 189863 189863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold432 SAMTools SNP 189926 189926 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C26%2C2%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.17%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold432 SAMTools SNP 189931 189931 153 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C27%2C4%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold432 SAMTools SNP 190535 190535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold432 SAMTools SNP 191143 191143 226 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold432 SAMTools SNP 191179 191179 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold432 SAMTools SNP 191203 191203 63.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C40%2C34%2C94%2C0%2C91:10 scaffold432 SAMTools SNP 191224 191224 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D56.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C88:86 scaffold432 SAMTools SNP 193947 193947 173 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2777%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C25%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D0.43%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C88%2C0:99 scaffold432 SAMTools SNP 194617 194617 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D954%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C217%2C392%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 194690 194690 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D713%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C3%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold432 SAMTools SNP 194984 194984 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D647%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D204%2C296%2C89%2C58%3BMQ%3D50%3BFQ%3D224%3BPV4%3D3.1e-05%2C2.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold432 SAMTools SNP 195041 195041 74.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0445%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C8:11 scaffold432 SAMTools SNP 195130 195130 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C164%2C23%2C39%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1.7e-07%2C4.1e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold432 SAMTools SNP 195230 195230 177 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C117%2C0%2C210%2C102%2C207:99 scaffold432 SAMTools SNP 195592 195592 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C120%2C0:99 scaffold432 SAMTools SNP 195820 195820 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C23%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.49%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold432 SAMTools SNP 195843 195843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.074%2C0.15%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 198352 198352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C7%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.071%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 198406 198406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C5.3e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 199009 199009 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 199043 199043 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 199670 199670 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C6%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.024%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 199697 199697 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C43%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 200682 200682 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C99%2C30%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 200709 200709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C27%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold432 SAMTools SNP 201883 201883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D212%2C22%2C207%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 201904 201904 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D463%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D207%2C31%2C207%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 202936 202936 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C209%2C2%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.8e-118%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 205042 205042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold432 SAMTools SNP 205077 205077 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 205201 205201 37.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold432 SAMTools SNP 209004 209004 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C38%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 209192 209192 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.19%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C210:65 scaffold432 SAMTools SNP 209763 209763 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C46%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C244%2C0:99 scaffold432 SAMTools SNP 210118 210118 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C14%2C12%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C7e-39%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold432 SAMTools SNP 210153 210153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C48%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold432 SAMTools SNP 210397 210397 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C93%2C0:99 scaffold432 SAMTools SNP 210589 210589 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 213883 213883 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold432 SAMTools SNP 214955 214955 25.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold432 SAMTools SNP 215065 215065 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold432 SAMTools SNP 218789 218789 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold432 SAMTools SNP 218809 218809 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 226675 226675 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold432 SAMTools SNP 227399 227399 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold432 SAMTools SNP 227457 227457 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C75%2C0:99 scaffold432 SAMTools SNP 238021 238021 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C13%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.00082%2C0.12%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold432 SAMTools SNP 238061 238061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C18%2C45%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 238397 238397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C51%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 240396 240396 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C2%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.38%2C0.033%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 240417 240417 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C50%3BMQ%3D49%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold432 SAMTools SNP 240567 240567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold432 SAMTools SNP 241863 241863 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C4%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold432 SAMTools SNP 241879 241879 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C0%2C17%3BMQ%3D50%3BFQ%3D85%3BPV4%3D2.8e-07%2C5.6e-14%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold432 SAMTools SNP 243514 243514 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C5%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold432 SAMTools SNP 249535 249535 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C59%2C0:99 scaffold432 SAMTools SNP 249960 249960 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C28%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 251439 251439 14.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold432 SAMTools SNP 251608 251608 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 252137 252137 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold432 SAMTools SNP 252859 252859 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold432 SAMTools SNP 253961 253961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C32%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 256184 256184 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C24%2C57%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 256208 256208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 256515 256515 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold432 SAMTools SNP 256563 256563 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.00093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold432 SAMTools SNP 256649 256649 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold432 SAMTools SNP 256796 256796 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 257790 257790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C31%2C22%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D0.083%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold432 SAMTools SNP 278411 278411 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C21%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.31%2C1.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold432 SAMTools SNP 278638 278638 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold432 SAMTools SNP 278928 278928 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 279637 279637 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 279664 279664 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold432 SAMTools SNP 279993 279993 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 280463 280463 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 280469 280469 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold432 SAMTools SNP 286785 286785 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C66%2C0:99 scaffold432 SAMTools SNP 286889 286889 188 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C135%2C0:99 scaffold432 SAMTools SNP 287067 287067 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold432 SAMTools SNP 287069 287069 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold432 SAMTools SNP 287897 287897 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C15%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold432 SAMTools SNP 288085 288085 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.27%2C0.0018%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold432 SAMTools SNP 288087 288087 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00029%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C226:99 scaffold432 SAMTools SNP 288460 288460 75.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C18%2C0:33 scaffold432 SAMTools SNP 303049 303049 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.17%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C150:99 scaffold432 SAMTools SNP 303097 303097 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold432 SAMTools SNP 303106 303106 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold432 SAMTools SNP 303293 303293 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold432 SAMTools SNP 303302 303302 150 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C123:99 scaffold432 SAMTools SNP 303317 303317 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold432 SAMTools SNP 303335 303335 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.13%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold432 SAMTools SNP 303721 303721 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.1%2C0.0047%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C195:99 scaffold432 SAMTools SNP 303735 303735 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold432 SAMTools SNP 303927 303927 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C1%2C19%2C6%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.46%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C19:22 scaffold432 SAMTools SNP 303973 303973 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold432 SAMTools SNP 304078 304078 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C45%2C0:87 scaffold432 SAMTools SNP 304728 304728 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold432 SAMTools SNP 305499 305499 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 305520 305520 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 305708 305708 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 305732 305732 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 305776 305776 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold432 SAMTools SNP 306264 306264 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold432 SAMTools SNP 306323 306323 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5.8e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C218:50 scaffold432 SAMTools SNP 306482 306482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold432 SAMTools SNP 307008 307008 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C7.5e-06%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C201:48 scaffold432 SAMTools SNP 307217 307217 24.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold432 SAMTools SNP 307503 307503 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold432 SAMTools SNP 307932 307932 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D33.8%3BPV4%3D0.15%2C2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C61:64 scaffold432 SAMTools SNP 308728 308728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C44%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold432 SAMTools SNP 313396 313396 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C168:99 scaffold432 SAMTools SNP 313445 313445 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold432 SAMTools SNP 313470 313470 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold432 SAMTools SNP 313507 313507 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 315427 315427 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C7%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.53%2C1%2C0.42%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 315446 315446 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C7%2C1%3BMQ%3D49%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold432 SAMTools SNP 316192 316192 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C11%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C3.9e-16%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold432 SAMTools SNP 321483 321483 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0012%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C233:40 scaffold432 SAMTools SNP 321904 321904 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0:51 scaffold432 SAMTools SNP 321928 321928 43.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold432 SAMTools SNP 322072 322072 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold432 SAMTools SNP 322087 322087 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 322298 322298 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C21%2C0:39 scaffold432 SAMTools SNP 322577 322577 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D47%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C72%2C0:99 scaffold432 SAMTools SNP 327231 327231 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 327275 327275 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold432 SAMTools SNP 330163 330163 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold432 SAMTools SNP 335815 335815 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold432 SAMTools SNP 336574 336574 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2354%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D978%2C2%2C1366%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.57%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold432 SAMTools SNP 338610 338610 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3844%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D230%2C1726%2C211%2C1677%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 338826 338826 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C416%2C0%2C114%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.049%2C1%2C1%2C7.2e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold432 SAMTools SNP 342102 342102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C310%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 342168 342168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1234%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C747%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 342365 342365 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.14%2C0.31%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold432 SAMTools SNP 343073 343073 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C193%2C299%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 352595 352595 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C42%2C0:81 scaffold432 SAMTools SNP 352686 352686 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C36%2C0:69 scaffold432 SAMTools SNP 357006 357006 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold432 SAMTools SNP 358661 358661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D615%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C197%2C418%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 362480 362480 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C56%2C88%2C44%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 364156 364156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C1%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 364487 364487 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold432 SAMTools SNP 364493 364493 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold432 SAMTools SNP 369836 369836 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold432 SAMTools SNP 369866 369866 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D42%3BFQ%3D57%3BPV4%3D1%2C0.066%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C131:87 scaffold432 SAMTools SNP 370186 370186 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C13%3BMQ%3D42%3BFQ%3D87%3BPV4%3D1%2C1%2C0.0077%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C231:99 scaffold432 SAMTools SNP 370202 370202 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C13%3BMQ%3D42%3BFQ%3D87%3BPV4%3D1%2C1%2C0.0077%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C232:99 scaffold432 SAMTools SNP 370519 370519 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C8%3BMQ%3D42%3BFQ%3D82%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C206:99 scaffold432 SAMTools SNP 370538 370538 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C198:63 scaffold432 SAMTools SNP 375617 375617 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 380447 380447 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C41:39 scaffold432 SAMTools SNP 380970 380970 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C84%2C0:99 scaffold432 SAMTools SNP 382586 382586 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 382614 382614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C5%2C66%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 384393 384393 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C35%2C6%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 396258 396258 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold432 SAMTools SNP 399779 399779 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 401764 401764 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold432 SAMTools SNP 403231 403231 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 407629 407629 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 408412 408412 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1e-05%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C176:82 scaffold432 SAMTools SNP 409017 409017 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold432 SAMTools SNP 409954 409954 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C110%2C3%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 409999 409999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C2%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold432 SAMTools SNP 410605 410605 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C44%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.095%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 412050 412050 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold432 SAMTools SNP 413849 413849 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C0%2C11%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.18%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold432 SAMTools SNP 419573 419573 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold432 SAMTools SNP 419587 419587 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C144%2C16%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 419590 419590 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C16%2C29%2C0%3BMQ%3D49%3BFQ%3D26%3BPV4%3D0.078%2C0.24%2C0.36%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold432 SAMTools SNP 419999 419999 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C36%2C10%2C118%3BMQ%3D49%3BFQ%3D225%3BPV4%3D5e-12%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 420080 420080 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C32%2C3%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.16%2C0.1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold432 SAMTools SNP 420081 420081 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C32%2C3%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.27%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold432 SAMTools SNP 421338 421338 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 422393 422393 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C40%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.18%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold432 SAMTools SNP 423776 423776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.46%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 425015 425015 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.025%2C0.00012%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold432 SAMTools SNP 425303 425303 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.028%2C0.0041%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold432 SAMTools SNP 425401 425401 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C5%2C28%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C7.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold432 SAMTools SNP 426254 426254 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold432 SAMTools SNP 426313 426313 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C78%2C20%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.04%2C2.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C64:67 scaffold432 SAMTools SNP 426347 426347 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C72%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 426634 426634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C77%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 427021 427021 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C13%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 427271 427271 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C21%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold432 SAMTools SNP 428613 428613 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C5%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.00042%2C3.6e-05%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold432 SAMTools SNP 429227 429227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C53%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.27%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 431868 431868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 431886 431886 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 431942 431942 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C13%2C13%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.58%2C6.2e-37%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold432 SAMTools SNP 432000 432000 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C12%2C7%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.77%2C1.3e-08%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold432 SAMTools SNP 432368 432368 83.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold432 SAMTools SNP 432971 432971 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold432 SAMTools SNP 453233 453233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 453279 453279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold432 SAMTools SNP 453311 453311 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold432 SAMTools SNP 453773 453773 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold432 SAMTools SNP 453823 453823 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold432 SAMTools SNP 453835 453835 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 453838 453838 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold432 SAMTools SNP 454294 454294 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1.4e-05%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold432 SAMTools SNP 454312 454312 158 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C21%2C0:39 scaffold432 SAMTools SNP 454318 454318 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.007%2C0.019%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C252:99 scaffold432 SAMTools SNP 454336 454336 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C206:99 scaffold432 SAMTools SNP 454348 454348 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold432 SAMTools SNP 454909 454909 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C255%2C0:99 scaffold432 SAMTools SNP 455259 455259 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C113%2C45%2C14%3BMQ%3D49%3BFQ%3D225%3BPV4%3D5.2e-15%2C1%2C0.19%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 455269 455269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C86%2C45%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.6e-11%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 456358 456358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold432 SAMTools SNP 456487 456487 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.37%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold432 SAMTools SNP 457350 457350 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C18%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold432 SAMTools SNP 457398 457398 194 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C28%2C214%2C0%2C208:99 scaffold432 SAMTools SNP 457488 457488 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold432 SAMTools SNP 457790 457790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 459502 459502 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold432 SAMTools SNP 459629 459629 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C51%2C6%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.021%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold432 SAMTools SNP 461107 461107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C56%3BMQ%3D50%3BFQ%3D203%3BPV4%3D2.9e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold432 SAMTools SNP 461117 461117 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C13%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1e-08%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold432 SAMTools SNP 461273 461273 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C42%2C136%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 462025 462025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 462293 462293 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C59%2C40%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 462837 462837 26.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold432 SAMTools SNP 565004 565004 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 565711 565711 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 566437 566437 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C57%2C0:99 scaffold432 SAMTools SNP 566481 566481 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C30%2C0:57 scaffold432 SAMTools SNP 567125 567125 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold432 SAMTools SNP 575032 575032 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold432 SAMTools SNP 575044 575044 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold432 SAMTools SNP 575459 575459 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold432 SAMTools SNP 575504 575504 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold432 SAMTools SNP 575633 575633 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C199:62 scaffold432 SAMTools SNP 576876 576876 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold432 SAMTools SNP 577168 577168 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 577210 577210 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold432 SAMTools SNP 577411 577411 66.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold432 SAMTools SNP 577976 577976 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold432 SAMTools SNP 578315 578315 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold432 SAMTools SNP 578447 578447 56 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C12%2C85%2C0%2C82:16 scaffold432 SAMTools SNP 580541 580541 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold432 SAMTools SNP 581062 581062 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C3.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C244:79 scaffold432 SAMTools SNP 581527 581527 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.51%2C4e-13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C160:99 scaffold432 SAMTools SNP 581834 581834 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold432 SAMTools SNP 583362 583362 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 586844 586844 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold432 SAMTools SNP 586851 586851 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold432 SAMTools SNP 588521 588521 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 588533 588533 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 588588 588588 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold432 SAMTools SNP 589143 589143 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C11%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold432 SAMTools SNP 589266 589266 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold432 SAMTools SNP 589269 589269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold432 SAMTools SNP 590141 590141 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold432 SAMTools SNP 590300 590300 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C225:44 scaffold432 SAMTools SNP 590303 590303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold432 SAMTools SNP 590411 590411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold432 SAMTools SNP 590699 590699 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C22%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold432 SAMTools SNP 590861 590861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0004%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 592637 592637 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold432 SAMTools SNP 592687 592687 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C20%2C14%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 592904 592904 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C9%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.68%2C0.095%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 592943 592943 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C25%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C175%2C0:99 scaffold432 SAMTools SNP 593042 593042 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C22%2C16%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.03%2C6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold432 SAMTools SNP 593133 593133 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C56%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D1%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C131%2C0:99 scaffold432 SAMTools SNP 593552 593552 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C17%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.72%2C4.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold432 SAMTools SNP 593627 593627 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 593950 593950 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C37%2C57%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 594165 594165 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C27%2C15%2C37%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.069%2C7.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold432 SAMTools SNP 595093 595093 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 595134 595134 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.55%2C9.4e-05%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold432 SAMTools SNP 595374 595374 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.38%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C241:99 scaffold432 SAMTools SNP 595430 595430 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold432 SAMTools SNP 595431 595431 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.13%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold432 SAMTools SNP 595445 595445 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 595727 595727 28.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold432 SAMTools SNP 596066 596066 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold432 SAMTools SNP 596278 596278 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.017%2C1.3e-07%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold432 SAMTools SNP 596344 596344 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 596347 596347 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 596667 596667 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 596676 596676 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold432 SAMTools SNP 596715 596715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C8%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold432 SAMTools SNP 596742 596742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C63%2C23%3BMQ%3D50%3BFQ%3D-245%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C218%2C0:99 scaffold432 SAMTools SNP 596980 596980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C53%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold432 SAMTools SNP 597253 597253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C25%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 597274 597274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C15%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold432 SAMTools SNP 597337 597337 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C25%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 597478 597478 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 597526 597526 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold432 SAMTools SNP 597560 597560 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold432 SAMTools SNP 597680 597680 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold432 SAMTools SNP 597981 597981 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold432 SAMTools SNP 598002 598002 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 598311 598311 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D43%3BFQ%3D14.9%3BPV4%3D0.33%2C0.013%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C42:45 scaffold432 SAMTools SNP 599688 599688 13.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold432 SAMTools SNP 601852 601852 47.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-28%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C1%2C0:4 scaffold432 SAMTools SNP 604190 604190 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C6%2C20%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 604624 604624 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 604699 604699 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 604978 604978 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C12%2C46%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 604990 604990 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C43%2C29%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 605293 605293 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C27%2C20%2C20%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.017%2C3e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold432 SAMTools SNP 605485 605485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold432 SAMTools SNP 605530 605530 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C8%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold432 SAMTools SNP 605771 605771 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold432 SAMTools SNP 609169 609169 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold432 SAMTools SNP 615248 615248 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold432 SAMTools SNP 615285 615285 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold432 SAMTools SNP 618047 618047 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold432 SAMTools SNP 618065 618065 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.17%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C213:99 scaffold432 SAMTools SNP 618072 618072 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.27%2C9.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold432 SAMTools SNP 619669 619669 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold432 SAMTools SNP 619711 619711 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C33%2C0:63 scaffold432 SAMTools SNP 619798 619798 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.3%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold432 SAMTools SNP 620155 620155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 620188 620188 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.14%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold432 SAMTools SNP 620206 620206 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C0.37%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold432 SAMTools SNP 620562 620562 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C24%2C0:45 scaffold432 SAMTools SNP 620985 620985 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C21%2C7%3BMQ%3D27%3BFQ%3D109%3BPV4%3D0.5%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C136:99 scaffold432 SAMTools SNP 630416 630416 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold432 SAMTools SNP 631388 631388 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 631403 631403 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 631579 631579 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold432 SAMTools SNP 631776 631776 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.077%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold432 SAMTools SNP 632220 632220 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold432 SAMTools SNP 632277 632277 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 632283 632283 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C42%2C0:81 scaffold432 SAMTools SNP 632352 632352 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold432 SAMTools SNP 632989 632989 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold432 SAMTools SNP 633751 633751 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 633909 633909 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 633951 633951 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold432 SAMTools SNP 634420 634420 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold432 SAMTools SNP 634453 634453 73 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.3%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C124:99 scaffold432 SAMTools SNP 634466 634466 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold432 SAMTools SNP 634972 634972 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold432 SAMTools SNP 635005 635005 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold432 SAMTools SNP 635373 635373 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold432 SAMTools SNP 635435 635435 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold432 SAMTools SNP 635921 635921 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 636068 636068 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C18%2C0:33 scaffold432 SAMTools SNP 637356 637356 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C27%2C0:51 scaffold432 SAMTools SNP 640188 640188 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C1%2C37%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 640628 640628 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C59%3BMQ%3D48%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold432 SAMTools SNP 640745 640745 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C38%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.21%2C2.5e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold432 SAMTools SNP 641451 641451 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold432 SAMTools SNP 641475 641475 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 641758 641758 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 641797 641797 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 641812 641812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 642947 642947 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C0.0019%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold432 SAMTools SNP 642957 642957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold432 SAMTools SNP 643022 643022 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C6%2C26%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.22%2C6.5e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold432 SAMTools SNP 643762 643762 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C11%3BMQ%3D49%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold432 SAMTools SNP 643813 643813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C51%3BMQ%3D49%3BFQ%3D-153%3BPV4%3D1%2C1%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold432 SAMTools SNP 645115 645115 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C138:33 scaffold432 SAMTools SNP 649312 649312 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C1%2C1%2C5.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold432 SAMTools SNP 649313 649313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold432 SAMTools SNP 649336 649336 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold432 SAMTools SNP 651092 651092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 651098 651098 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 651320 651320 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 651540 651540 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 651714 651714 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 651907 651907 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 652021 652021 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 652030 652030 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold432 SAMTools SNP 652328 652328 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 652329 652329 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold432 SAMTools SNP 653176 653176 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 653188 653188 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 655110 655110 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 656011 656011 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.026%2C6.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold432 SAMTools SNP 656373 656373 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C45%2C0:87 scaffold432 SAMTools SNP 656750 656750 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 656794 656794 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold432 SAMTools SNP 656806 656806 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 656821 656821 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 657062 657062 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold432 SAMTools SNP 657079 657079 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold432 SAMTools SNP 664834 664834 67.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold432 SAMTools SNP 665013 665013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C19%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C3.4e-20%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold432 SAMTools SNP 665031 665031 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C78%2C0:99 scaffold432 SAMTools SNP 665124 665124 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.087%2C1e-15%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold432 SAMTools SNP 665337 665337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold432 SAMTools SNP 665649 665649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C5%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold432 SAMTools SNP 665697 665697 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C180:99 scaffold432 SAMTools SNP 665702 665702 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 665826 665826 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 665880 665880 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C16%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.29%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold432 SAMTools SNP 665979 665979 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C186:65 scaffold432 SAMTools SNP 665984 665984 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C5.2e-07%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C71:44 scaffold432 SAMTools SNP 666234 666234 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C110:60 scaffold432 SAMTools SNP 666366 666366 90.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C15%2C0:27 scaffold432 SAMTools SNP 666921 666921 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 666930 666930 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold432 SAMTools SNP 667514 667514 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C119:41 scaffold432 SAMTools SNP 667989 667989 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C28%2C1%2C25%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1.8e-05%2C3.9e-47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold432 SAMTools SNP 669531 669531 61.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold432 SAMTools SNP 669645 669645 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold432 SAMTools SNP 669756 669756 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C49:36 scaffold432 SAMTools SNP 669813 669813 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold432 SAMTools SNP 670136 670136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold432 SAMTools SNP 670790 670790 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 670799 670799 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold432 SAMTools SNP 671132 671132 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold432 SAMTools SNP 671159 671159 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold432 SAMTools SNP 671662 671662 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold432 SAMTools SNP 672626 672626 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.5e-15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold432 SAMTools SNP 676589 676589 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C0.34%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold432 SAMTools SNP 676718 676718 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C3%3BMQ%3D48%3BFQ%3D108%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold432 SAMTools SNP 691892 691892 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C3%3BMQ%3D48%3BFQ%3D114%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold432 SAMTools SNP 693926 693926 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold432 SAMTools SNP 698283 698283 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 703274 703274 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 711939 711939 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold432 SAMTools SNP 719677 719677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold432 SAMTools SNP 720966 720966 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C19%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.014%2C7.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold432 SAMTools SNP 721244 721244 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C245:94 scaffold432 SAMTools SNP 721294 721294 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 721738 721738 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 722777 722777 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 723468 723468 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold432 SAMTools SNP 724860 724860 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold432 SAMTools SNP 725420 725420 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold432 SAMTools SNP 725854 725854 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold432 SAMTools SNP 725910 725910 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold432 SAMTools SNP 726083 726083 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold432 SAMTools SNP 732820 732820 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold432 SAMTools SNP 739883 739883 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 739910 739910 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold432 SAMTools SNP 740327 740327 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C18%2C1%3BMQ%3D46%3BFQ%3D-28%3BPV4%3D1%2C1%2C0.28%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C1%2C0:4 scaffold432 SAMTools SNP 740509 740509 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C1%2C14%3BMQ%3D44%3BFQ%3D191%3BPV4%3D0.3%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C232:99 scaffold432 SAMTools SNP 740649 740649 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 740687 740687 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 740689 740689 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 741080 741080 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold432 SAMTools SNP 741302 741302 96 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C0%2C9%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.57%2C0.48%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold432 SAMTools SNP 741313 741313 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C4%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0086%2C8.6e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold432 SAMTools SNP 742148 742148 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C39%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.087%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C62:65 scaffold432 SAMTools SNP 742208 742208 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 744075 744075 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C71:74 scaffold432 SAMTools SNP 744179 744179 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.39%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold432 SAMTools SNP 744192 744192 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold432 SAMTools SNP 744201 744201 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.042%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold432 SAMTools SNP 755467 755467 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C251:99 scaffold432 SAMTools SNP 755485 755485 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold432 SAMTools SNP 755706 755706 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold432 SAMTools SNP 756206 756206 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 756277 756277 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C39%2C0:75 scaffold432 SAMTools SNP 756445 756445 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold432 SAMTools SNP 756547 756547 13.9 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold432 SAMTools SNP 768825 768825 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold432 SAMTools SNP 776833 776833 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold432 SAMTools SNP 783734 783734 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold432 SAMTools SNP 783775 783775 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold432 SAMTools SNP 783868 783868 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C0.034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold432 SAMTools SNP 787116 787116 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.0085%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold432 SAMTools SNP 787225 787225 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C4%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold432 SAMTools SNP 787978 787978 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold432 SAMTools SNP 792874 792874 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold432 SAMTools SNP 792921 792921 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.4%2C0.3%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold432 SAMTools SNP 794004 794004 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold432 SAMTools SNP 794160 794160 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold432 SAMTools SNP 795455 795455 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold432 SAMTools SNP 795475 795475 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold432 SAMTools SNP 795529 795529 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 796267 796267 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold432 SAMTools SNP 800270 800270 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold432 SAMTools SNP 801466 801466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold432 SAMTools SNP 801532 801532 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold432 SAMTools SNP 801883 801883 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C0.22%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold432 SAMTools SNP 801934 801934 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold432 SAMTools SNP 804970 804970 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.00055%2C6.2e-13%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C228:63 scaffold432 SAMTools SNP 806170 806170 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold432 SAMTools SNP 806222 806222 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C6.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C242:34 scaffold432 SAMTools SNP 806409 806409 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C217%2C0:99 scaffold432 SAMTools SNP 807054 807054 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold432 SAMTools SNP 810633 810633 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C57%2C0:99 scaffold432 SAMTools SNP 811034 811034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold432 SAMTools SNP 812044 812044 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 813617 813617 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold432 SAMTools SNP 813648 813648 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold432 SAMTools SNP 814089 814089 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.41%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C144:99 scaffold432 SAMTools SNP 814142 814142 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C160:99 scaffold432 SAMTools SNP 814509 814509 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold432 SAMTools SNP 817710 817710 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold432 SAMTools SNP 817967 817967 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C77:37 scaffold432 SAMTools SNP 819476 819476 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 819491 819491 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold432 SAMTools SNP 820113 820113 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C7.8e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold432 SAMTools SNP 820636 820636 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C30%2C0:57 scaffold432 SAMTools SNP 821161 821161 47.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold43200 SAMTools SNP 436 436 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43200 SAMTools SNP 644 644 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D792%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C27%2C0:51 scaffold43200 SAMTools SNP 935 935 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C24%2C0:45 scaffold43200 SAMTools SNP 992 992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C135%2C36%2C73%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0018%2C2e-101%2C0.00027%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 1015 1015 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C202%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43200 SAMTools SNP 1073 1073 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C44%2C32%2C30%3BMQ%3D48%3BFQ%3D144%3BPV4%3D0.42%2C3.4e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43200 SAMTools SNP 1092 1092 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C196%2C21%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43200 SAMTools SNP 1116 1116 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C26%2C123%2C43%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.41%2C0.19%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 1136 1136 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C54%2C82%2C37%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 2490 2490 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C81%2C2%2C46%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 2517 2517 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C0%2C20%3BMQ%3D48%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C236:99 scaffold43200 SAMTools SNP 3398 3398 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold43200 SAMTools SNP 5390 5390 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C0%2C117%2C10%3BMQ%3D48%3BFQ%3D216%3BPV4%3D0.0073%2C0.038%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43200 SAMTools SNP 5426 5426 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C1%2C114%2C53%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.8e-14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 5808 5808 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C135%2C55%2C82%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0077%2C1%2C0.088%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 6982 6982 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C4%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43200 SAMTools SNP 7019 7019 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43200 SAMTools SNP 10124 10124 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43200 SAMTools SNP 111304 111304 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43200 SAMTools SNP 111330 111330 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43200 SAMTools SNP 111383 111383 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold43200 SAMTools SNP 111400 111400 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.028%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold43200 SAMTools SNP 111868 111868 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C239:99 scaffold43200 SAMTools SNP 111911 111911 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.082%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold43200 SAMTools SNP 115036 115036 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.099%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43200 SAMTools SNP 115051 115051 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43200 SAMTools SNP 163888 163888 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43200 SAMTools SNP 181927 181927 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43200 SAMTools SNP 190658 190658 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43200 SAMTools SNP 192835 192835 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43200 SAMTools SNP 219114 219114 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold43200 SAMTools SNP 219414 219414 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.57%2C4.6e-16%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold43200 SAMTools SNP 219417 219417 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C224:99 scaffold43200 SAMTools SNP 219491 219491 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C78%2C0:99 scaffold43200 SAMTools SNP 219537 219537 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold43200 SAMTools SNP 222352 222352 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C90%2C0:99 scaffold43200 SAMTools SNP 222566 222566 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43200 SAMTools SNP 222869 222869 40.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold43200 SAMTools SNP 224281 224281 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold43200 SAMTools SNP 226787 226787 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43200 SAMTools SNP 226826 226826 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.42%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43200 SAMTools SNP 227880 227880 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43206 SAMTools SNP 325 325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 812 812 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 9839 9839 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold43206 SAMTools SNP 9927 9927 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C234:37 scaffold43206 SAMTools SNP 12191 12191 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C21%2C3%2C10%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.048%2C4.2e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C247:33 scaffold43206 SAMTools SNP 12217 12217 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C3%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.048%2C2.7e-25%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C247:85 scaffold43206 SAMTools SNP 12762 12762 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.28%2C0.00054%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43206 SAMTools SNP 12798 12798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 13290 13290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C2.9e-10%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 13299 13299 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 13382 13382 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43206 SAMTools SNP 15183 15183 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43206 SAMTools SNP 15356 15356 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold43206 SAMTools SNP 15396 15396 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C6%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.7%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43206 SAMTools SNP 16609 16609 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.0012%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43206 SAMTools SNP 20540 20540 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.021%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 20546 20546 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43206 SAMTools SNP 20921 20921 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43206 SAMTools SNP 20970 20970 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43206 SAMTools SNP 22710 22710 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C31%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C229%2C0:99 scaffold43206 SAMTools SNP 23196 23196 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C25%2C36%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 27972 27972 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 28029 28029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C51%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43206 SAMTools SNP 28638 28638 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43206 SAMTools SNP 28698 28698 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold43206 SAMTools SNP 34339 34339 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold43206 SAMTools SNP 35482 35482 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43206 SAMTools SNP 36562 36562 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.32%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C35:38 scaffold43206 SAMTools SNP 37290 37290 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43206 SAMTools SNP 37657 37657 173 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C49:87 scaffold43206 SAMTools SNP 38125 38125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43206 SAMTools SNP 38188 38188 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.38%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43206 SAMTools SNP 38556 38556 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43206 SAMTools SNP 38569 38569 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43206 SAMTools SNP 38789 38789 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C188:99 scaffold43206 SAMTools SNP 38801 38801 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold43206 SAMTools SNP 39163 39163 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C12%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43206 SAMTools SNP 39947 39947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43206 SAMTools SNP 40991 40991 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.058%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold43206 SAMTools SNP 41769 41769 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43206 SAMTools SNP 41817 41817 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43206 SAMTools SNP 41823 41823 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43206 SAMTools SNP 42034 42034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43206 SAMTools SNP 42121 42121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43206 SAMTools SNP 44811 44811 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43206 SAMTools SNP 44814 44814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43206 SAMTools SNP 44823 44823 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.46%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C235:99 scaffold43206 SAMTools SNP 48248 48248 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C54%2C86%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D5.7e-07%2C1%2C1%2C2.1e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43206 SAMTools SNP 67352 67352 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43206 SAMTools SNP 82596 82596 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 83225 83225 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 83235 83235 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 91678 91678 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold43206 SAMTools SNP 91726 91726 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43206 SAMTools SNP 93031 93031 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C24%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.17%2C6.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43206 SAMTools SNP 93259 93259 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0048%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C125:95 scaffold43206 SAMTools SNP 93445 93445 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C16%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C2.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43206 SAMTools SNP 93466 93466 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C17%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.3e-41%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43206 SAMTools SNP 104726 104726 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0068%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C150:47 scaffold43206 SAMTools SNP 105281 105281 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C8.7e-09%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C99:71 scaffold43206 SAMTools SNP 106523 106523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43206 SAMTools SNP 106990 106990 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43206 SAMTools SNP 121686 121686 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43206 SAMTools SNP 130831 130831 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43206 SAMTools SNP 132388 132388 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C6%2C20%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 133922 133922 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C11%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.039%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43206 SAMTools SNP 134926 134926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 135203 135203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C12%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.33%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold43206 SAMTools SNP 135245 135245 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.57%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold43206 SAMTools SNP 135278 135278 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C169:99 scaffold43206 SAMTools SNP 135296 135296 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43206 SAMTools SNP 140591 140591 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43206 SAMTools SNP 140621 140621 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C60%2C1%3BMQ%3D50%3BFQ%3D-181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43206 SAMTools SNP 146422 146422 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00012%2C0.00022%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43206 SAMTools SNP 146425 146425 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C71%2C0%2C46%3BMQ%3D50%3BFQ%3D45%3BPV4%3D2e-06%2C7.8e-06%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43206 SAMTools SNP 148108 148108 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.24%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 148146 148146 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43206 SAMTools SNP 148276 148276 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C9%2C2%3BMQ%3D44%3BFQ%3D171%3BPV4%3D1%2C1%2C0.0032%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold43206 SAMTools SNP 158667 158667 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 159290 159290 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43206 SAMTools SNP 163147 163147 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43206 SAMTools SNP 167810 167810 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D456%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C202%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C255%2C0:99 scaffold43206 SAMTools SNP 167854 167854 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D752%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C550%2C164%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D2.7e-129%2C4.4e-37%2C1%2C9.5e-133;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43206 SAMTools SNP 167905 167905 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D241%2C0%2C55%2C3%3BMQ%3D49%3BFQ%3D30%3BPV4%3D0.007%2C1.4e-13%2C1.4e-07%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C229:60 scaffold43206 SAMTools SNP 168594 168594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C134%2C5%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43206 SAMTools SNP 168604 168604 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C34%2C0%3BMQ%3D47%3BFQ%3D219%3BPV4%3D2.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold43206 SAMTools SNP 168631 168631 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C51%2C2%2C19%3BMQ%3D48%3BFQ%3D197%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43206 SAMTools SNP 168791 168791 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C27%2C91%3BMQ%3D48%3BFQ%3D220%3BPV4%3D8.6e-05%2C2.9e-36%2C0.0037%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43206 SAMTools SNP 168950 168950 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C9%2C0%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.00014%2C3.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43206 SAMTools SNP 183965 183965 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43206 SAMTools SNP 184004 184004 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43206 SAMTools SNP 184047 184047 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.31%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C78:74 scaffold43206 SAMTools SNP 184048 184048 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43206 SAMTools SNP 184113 184113 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 184114 184114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 184241 184241 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C69%2C0:99 scaffold43206 SAMTools SNP 184253 184253 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold43206 SAMTools SNP 188319 188319 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.02%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold43206 SAMTools SNP 188426 188426 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-4.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold43206 SAMTools SNP 188477 188477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43206 SAMTools SNP 188872 188872 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold43206 SAMTools SNP 188911 188911 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold43206 SAMTools SNP 188966 188966 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C0%3BMQ%3D48%3BFQ%3D-4.75%3BPV4%3D0.018%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C24:27 scaffold43206 SAMTools SNP 189001 189001 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C0%3BMQ%3D48%3BFQ%3D68%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C95:98 scaffold43206 SAMTools SNP 197808 197808 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C1%2C79%2C12%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.061%2C3e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C239:99 scaffold43206 SAMTools SNP 198291 198291 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C69%2C0:99 scaffold43206 SAMTools SNP 199625 199625 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43206 SAMTools SNP 199626 199626 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43206 SAMTools SNP 209293 209293 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 209985 209985 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.6%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43206 SAMTools SNP 210087 210087 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43206 SAMTools SNP 210623 210623 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-05%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 210698 210698 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C23%2C82%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 210713 210713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C21%2C65%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.059%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43206 SAMTools SNP 211677 211677 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C19%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43206 SAMTools SNP 214185 214185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43208 SAMTools SNP 6911 6911 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 18152 18152 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C197:54 scaffold43208 SAMTools SNP 18506 18506 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43208 SAMTools SNP 19797 19797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43208 SAMTools SNP 19815 19815 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C24%2C0:45 scaffold43208 SAMTools SNP 19929 19929 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C21%2C24%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 20304 20304 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 20313 20313 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C6%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.24%2C0.45%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43208 SAMTools SNP 22441 22441 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C5%2C2%3BMQ%3D49%3BFQ%3D143%3BPV4%3D0.077%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43208 SAMTools SNP 22447 22447 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43208 SAMTools SNP 22708 22708 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold43208 SAMTools SNP 22721 22721 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 22763 22763 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43208 SAMTools SNP 23597 23597 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43208 SAMTools SNP 23732 23732 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43208 SAMTools SNP 23744 23744 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43208 SAMTools SNP 24348 24348 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 24372 24372 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43208 SAMTools SNP 24374 24374 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43208 SAMTools SNP 24396 24396 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43208 SAMTools SNP 26965 26965 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43208 SAMTools SNP 26989 26989 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.12%2C3.7e-08%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43208 SAMTools SNP 27290 27290 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 27501 27501 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 37908 37908 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43208 SAMTools SNP 38992 38992 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43208 SAMTools SNP 40342 40342 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold43208 SAMTools SNP 42772 42772 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43208 SAMTools SNP 43139 43139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 44027 44027 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold43208 SAMTools SNP 44850 44850 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43208 SAMTools SNP 44913 44913 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold43208 SAMTools SNP 45980 45980 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0069%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43208 SAMTools SNP 45983 45983 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0069%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43208 SAMTools SNP 50464 50464 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C222:36 scaffold43208 SAMTools SNP 50508 50508 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C12%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43208 SAMTools SNP 50510 50510 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C15%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.72%2C1e-25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43208 SAMTools SNP 50889 50889 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C144%2C0:99 scaffold43208 SAMTools SNP 51358 51358 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.18%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold43208 SAMTools SNP 52280 52280 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43208 SAMTools SNP 52414 52414 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C48%2C0%2C15%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43208 SAMTools SNP 52418 52418 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C45%2C0%2C15%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43208 SAMTools SNP 54303 54303 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.21%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C204:99 scaffold43208 SAMTools SNP 54318 54318 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 54542 54542 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43208 SAMTools SNP 54650 54650 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43208 SAMTools SNP 55374 55374 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 55441 55441 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43208 SAMTools SNP 55500 55500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C75%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43208 SAMTools SNP 55548 55548 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C0%2C27%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43208 SAMTools SNP 56932 56932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C4%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43208 SAMTools SNP 56961 56961 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C4%2C2%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.41%2C0.083%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43208 SAMTools SNP 56973 56973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43208 SAMTools SNP 56991 56991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43208 SAMTools SNP 57244 57244 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43208 SAMTools SNP 57555 57555 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C194:33 scaffold43208 SAMTools SNP 57561 57561 35 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C25%2C16%2C64%2C0%2C61:16 scaffold43208 SAMTools SNP 58854 58854 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C36%2C0:69 scaffold43208 SAMTools SNP 86844 86844 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 86881 86881 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 90029 90029 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C37%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.048%2C3.7e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43208 SAMTools SNP 90685 90685 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C81%2C0:99 scaffold43208 SAMTools SNP 91037 91037 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C72%2C0:99 scaffold43208 SAMTools SNP 91238 91238 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C27%2C0:51 scaffold43208 SAMTools SNP 110997 110997 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold43208 SAMTools SNP 111057 111057 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold43208 SAMTools SNP 123127 123127 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.055%2C0.35%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C109:99 scaffold43208 SAMTools SNP 123170 123170 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.33%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold43208 SAMTools SNP 123687 123687 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43208 SAMTools SNP 123723 123723 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 124083 124083 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C3.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C186:71 scaffold43208 SAMTools SNP 124240 124240 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C45%2C0:87 scaffold43208 SAMTools SNP 124500 124500 45.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold43208 SAMTools SNP 137436 137436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 138792 138792 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43208 SAMTools SNP 139101 139101 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43208 SAMTools SNP 139217 139217 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43208 SAMTools SNP 141576 141576 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43208 SAMTools SNP 142380 142380 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43208 SAMTools SNP 142409 142409 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43208 SAMTools SNP 142422 142422 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43208 SAMTools SNP 142428 142428 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43208 SAMTools SNP 194893 194893 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C6%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43208 SAMTools SNP 194911 194911 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C25%2C17%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.004%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43208 SAMTools SNP 197923 197923 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C14%2C24%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43208 SAMTools SNP 198749 198749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 199604 199604 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C53%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 199624 199624 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C52%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 203037 203037 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C56%2C1%2C51%3BMQ%3D50%3BFQ%3D195%3BPV4%3D8.1e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43208 SAMTools SNP 203067 203067 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C66%2C1%2C48%3BMQ%3D50%3BFQ%3D182%3BPV4%3D3.5e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43208 SAMTools SNP 203686 203686 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43208 SAMTools SNP 204000 204000 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C49%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold43208 SAMTools SNP 204012 204012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43208 SAMTools SNP 204293 204293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43208 SAMTools SNP 205124 205124 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C32:35 scaffold43208 SAMTools SNP 223259 223259 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43208 SAMTools SNP 223685 223685 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43210 SAMTools SNP 19766 19766 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 29876 29876 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 29903 29903 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 33036 33036 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 38543 38543 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43210 SAMTools SNP 38580 38580 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43210 SAMTools SNP 38596 38596 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 39348 39348 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43210 SAMTools SNP 39628 39628 4.75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold43210 SAMTools SNP 50281 50281 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43210 SAMTools SNP 50294 50294 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43210 SAMTools SNP 50319 50319 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 50348 50348 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 50377 50377 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 75991 75991 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43210 SAMTools SNP 76591 76591 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43210 SAMTools SNP 76651 76651 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 76795 76795 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 76822 76822 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 78114 78114 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 78912 78912 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43210 SAMTools SNP 79181 79181 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43210 SAMTools SNP 79579 79579 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 79897 79897 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C70:73 scaffold43210 SAMTools SNP 85672 85672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 87509 87509 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 87591 87591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 90894 90894 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 95016 95016 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C64:67 scaffold43210 SAMTools SNP 95924 95924 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43210 SAMTools SNP 97040 97040 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43210 SAMTools SNP 109970 109970 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C99%2C0:99 scaffold43210 SAMTools SNP 110268 110268 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C31%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.038%2C0.36%2C1%2C1.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C192:99 scaffold43210 SAMTools SNP 110294 110294 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.016%2C0.14%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C202:99 scaffold43210 SAMTools SNP 110305 110305 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.016%2C0.1%2C1%2C5.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C202:99 scaffold43210 SAMTools SNP 110729 110729 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C61%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D1%2C0.005%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C66%2C0:99 scaffold43210 SAMTools SNP 111096 111096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 111222 111222 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 111995 111995 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 112066 112066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43210 SAMTools SNP 112084 112084 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43210 SAMTools SNP 112753 112753 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.062%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43210 SAMTools SNP 113780 113780 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold43210 SAMTools SNP 124448 124448 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 126318 126318 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 134781 134781 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43210 SAMTools SNP 134802 134802 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold43210 SAMTools SNP 135926 135926 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 136006 136006 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43210 SAMTools SNP 136018 136018 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43210 SAMTools SNP 136051 136051 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 137127 137127 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43210 SAMTools SNP 137148 137148 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C54%2C0:99 scaffold43210 SAMTools SNP 137190 137190 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold43210 SAMTools SNP 137229 137229 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.29%2C0.0024%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43210 SAMTools SNP 137241 137241 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D8.4e-07%2C1%2C1%2C2.1e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C230:99 scaffold43210 SAMTools SNP 138072 138072 84.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold43210 SAMTools SNP 138158 138158 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.37%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C106:99 scaffold43210 SAMTools SNP 138947 138947 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43210 SAMTools SNP 139061 139061 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 139064 139064 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43210 SAMTools SNP 139073 139073 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43210 SAMTools SNP 140242 140242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C52%2C2%3BMQ%3D50%3BFQ%3D-101%3BPV4%3D0.0039%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C74%2C0:99 scaffold43210 SAMTools SNP 142418 142418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C62%3BMQ%3D50%3BFQ%3D-206%3BPV4%3D0.18%2C0.0011%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C179%2C0:99 scaffold43210 SAMTools SNP 142555 142555 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C15%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D5.8e-08%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C219:99 scaffold43210 SAMTools SNP 142571 142571 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D124%3BPV4%3D2.1e-06%2C0.0043%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43210 SAMTools SNP 143356 143356 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43210 SAMTools SNP 143398 143398 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43210 SAMTools SNP 143425 143425 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00029%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43210 SAMTools SNP 143428 143428 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00029%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold43210 SAMTools SNP 143444 143444 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.046%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43210 SAMTools SNP 143874 143874 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43210 SAMTools SNP 143902 143902 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43210 SAMTools SNP 144511 144511 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43210 SAMTools SNP 144562 144562 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43210 SAMTools SNP 145403 145403 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43210 SAMTools SNP 158589 158589 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43210 SAMTools SNP 158610 158610 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43210 SAMTools SNP 208617 208617 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43240 SAMTools SNP 33229 33229 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 33234 33234 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 108100 108100 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C48%2C0:93 scaffold43240 SAMTools SNP 130944 130944 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43240 SAMTools SNP 132250 132250 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.42%2C1.8e-13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C188:37 scaffold43240 SAMTools SNP 137059 137059 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43240 SAMTools SNP 137060 137060 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43240 SAMTools SNP 138014 138014 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43240 SAMTools SNP 138067 138067 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold43240 SAMTools SNP 138086 138086 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43240 SAMTools SNP 139739 139739 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43240 SAMTools SNP 140352 140352 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43240 SAMTools SNP 141284 141284 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 141291 141291 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 144430 144430 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43240 SAMTools SNP 144436 144436 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43240 SAMTools SNP 144810 144810 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 144856 144856 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold43240 SAMTools SNP 146286 146286 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43240 SAMTools SNP 146372 146372 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C201:30 scaffold43240 SAMTools SNP 146873 146873 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.34%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43240 SAMTools SNP 146924 146924 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C30%2C0:57 scaffold43240 SAMTools SNP 149328 149328 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43240 SAMTools SNP 149859 149859 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43240 SAMTools SNP 149900 149900 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43240 SAMTools SNP 149977 149977 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43240 SAMTools SNP 150015 150015 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43240 SAMTools SNP 151320 151320 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43240 SAMTools SNP 151356 151356 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 153230 153230 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C107:43 scaffold43240 SAMTools SNP 155941 155941 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold43240 SAMTools SNP 156190 156190 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.65%2C0.066%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43240 SAMTools SNP 156250 156250 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5.7e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C222:42 scaffold43240 SAMTools SNP 156259 156259 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00011%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43240 SAMTools SNP 156598 156598 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 157005 157005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43240 SAMTools SNP 157209 157209 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.082%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold43240 SAMTools SNP 157325 157325 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43240 SAMTools SNP 157602 157602 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43240 SAMTools SNP 157626 157626 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43240 SAMTools SNP 157668 157668 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43240 SAMTools SNP 157681 157681 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 158315 158315 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold43240 SAMTools SNP 158334 158334 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 172011 172011 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold43240 SAMTools SNP 172105 172105 11.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold43240 SAMTools SNP 172305 172305 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold43240 SAMTools SNP 172431 172431 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C5.4e-15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C171:66 scaffold43240 SAMTools SNP 172539 172539 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0032%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C88:68 scaffold43240 SAMTools SNP 172934 172934 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold43240 SAMTools SNP 173719 173719 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C27%2C0:49 scaffold43240 SAMTools SNP 174029 174029 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C4%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C99%2C0:99 scaffold43240 SAMTools SNP 174044 174044 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C3%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C154%2C0:99 scaffold43240 SAMTools SNP 174223 174223 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C63%2C0:99 scaffold43240 SAMTools SNP 174243 174243 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43240 SAMTools SNP 174282 174282 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43240 SAMTools SNP 175692 175692 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43240 SAMTools SNP 176397 176397 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.058%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C235:99 scaffold43240 SAMTools SNP 176906 176906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43240 SAMTools SNP 176956 176956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43240 SAMTools SNP 177336 177336 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43240 SAMTools SNP 177417 177417 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.41%2C9.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43240 SAMTools SNP 177424 177424 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.12%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C208:99 scaffold43240 SAMTools SNP 177429 177429 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C3.5e-06%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C160:37 scaffold43240 SAMTools SNP 177739 177739 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43240 SAMTools SNP 177775 177775 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C31%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.71%2C4.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43240 SAMTools SNP 177844 177844 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold43240 SAMTools SNP 177868 177868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43240 SAMTools SNP 178208 178208 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43240 SAMTools SNP 178828 178828 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold43240 SAMTools SNP 179151 179151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43240 SAMTools SNP 179152 179152 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43240 SAMTools SNP 179706 179706 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43240 SAMTools SNP 179711 179711 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43240 SAMTools SNP 180200 180200 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43240 SAMTools SNP 180202 180202 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43240 SAMTools SNP 180235 180235 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C219:88 scaffold43240 SAMTools SNP 182050 182050 4.11 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold43240 SAMTools SNP 182878 182878 40.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold43240 SAMTools SNP 183197 183197 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 187619 187619 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43240 SAMTools SNP 187634 187634 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C27%2C0:51 scaffold43240 SAMTools SNP 187728 187728 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.48%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C214:99 scaffold43240 SAMTools SNP 193593 193593 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C25%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C253:99 scaffold43240 SAMTools SNP 197527 197527 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43240 SAMTools SNP 197534 197534 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43240 SAMTools SNP 198762 198762 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43240 SAMTools SNP 199668 199668 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C90:34 scaffold43240 SAMTools SNP 199705 199705 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43240 SAMTools SNP 199761 199761 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43240 SAMTools SNP 200014 200014 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 202803 202803 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43240 SAMTools SNP 203472 203472 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 203636 203636 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43240 SAMTools SNP 203698 203698 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43240 SAMTools SNP 203831 203831 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43240 SAMTools SNP 204477 204477 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C0.0062%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43240 SAMTools SNP 204501 204501 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43240 SAMTools SNP 204723 204723 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43240 SAMTools SNP 204979 204979 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43240 SAMTools SNP 204983 204983 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43240 SAMTools SNP 206518 206518 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.0072%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold43240 SAMTools SNP 206535 206535 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold43240 SAMTools SNP 206872 206872 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43240 SAMTools SNP 207722 207722 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 207734 207734 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 207764 207764 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43240 SAMTools SNP 207986 207986 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 208029 208029 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43240 SAMTools SNP 208080 208080 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold43240 SAMTools SNP 208663 208663 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43240 SAMTools SNP 209511 209511 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43240 SAMTools SNP 210252 210252 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.46%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C62:65 scaffold43240 SAMTools SNP 210363 210363 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 210372 210372 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold43240 SAMTools SNP 210387 210387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43240 SAMTools SNP 212772 212772 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold43240 SAMTools SNP 213184 213184 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold43240 SAMTools SNP 213238 213238 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43240 SAMTools SNP 213257 213257 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 213573 213573 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 213816 213816 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 213828 213828 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43240 SAMTools SNP 213888 213888 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43240 SAMTools SNP 214350 214350 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 214389 214389 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43240 SAMTools SNP 215053 215053 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43240 SAMTools SNP 215125 215125 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43240 SAMTools SNP 215360 215360 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C0.15%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43240 SAMTools SNP 215398 215398 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.058%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43240 SAMTools SNP 215719 215719 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.66%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold43240 SAMTools SNP 215782 215782 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold43240 SAMTools SNP 215821 215821 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43240 SAMTools SNP 215830 215830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.62%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold43240 SAMTools SNP 216284 216284 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold43240 SAMTools SNP 216329 216329 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43240 SAMTools SNP 216772 216772 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43240 SAMTools SNP 216844 216844 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold43240 SAMTools SNP 217351 217351 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43240 SAMTools SNP 217643 217643 84.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold43240 SAMTools SNP 227550 227550 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43240 SAMTools SNP 227556 227556 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43240 SAMTools SNP 227737 227737 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43240 SAMTools SNP 227741 227741 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold43240 SAMTools SNP 228874 228874 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43240 SAMTools SNP 228896 228896 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C0.043%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43240 SAMTools SNP 230144 230144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43240 SAMTools SNP 230207 230207 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.017%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold43240 SAMTools SNP 233629 233629 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43242 SAMTools SNP 31706 31706 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold43242 SAMTools SNP 31712 31712 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold43242 SAMTools SNP 31844 31844 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43242 SAMTools SNP 99238 99238 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43242 SAMTools SNP 165818 165818 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43242 SAMTools SNP 166225 166225 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43242 SAMTools SNP 166243 166243 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43242 SAMTools SNP 176979 176979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43242 SAMTools SNP 177184 177184 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00012%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43242 SAMTools SNP 178335 178335 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold43242 SAMTools SNP 181595 181595 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold43242 SAMTools SNP 181671 181671 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43242 SAMTools SNP 181700 181700 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C62:65 scaffold43242 SAMTools SNP 183826 183826 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.028%2C0.14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C241:99 scaffold43242 SAMTools SNP 183874 183874 158 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.57%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C217:99 scaffold43242 SAMTools SNP 184051 184051 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C206:99 scaffold43242 SAMTools SNP 184304 184304 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold43242 SAMTools SNP 184514 184514 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold43242 SAMTools SNP 184872 184872 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43242 SAMTools SNP 184962 184962 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43242 SAMTools SNP 185190 185190 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.021%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C185:99 scaffold43242 SAMTools SNP 185208 185208 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43242 SAMTools SNP 186717 186717 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43242 SAMTools SNP 186747 186747 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43242 SAMTools SNP 186775 186775 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43242 SAMTools SNP 186925 186925 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43242 SAMTools SNP 187326 187326 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold43242 SAMTools SNP 187862 187862 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C1%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43242 SAMTools SNP 187864 187864 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C1%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43242 SAMTools SNP 188427 188427 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43242 SAMTools SNP 188703 188703 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43242 SAMTools SNP 188717 188717 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43242 SAMTools SNP 188961 188961 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43242 SAMTools SNP 189401 189401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold43242 SAMTools SNP 189488 189488 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43242 SAMTools SNP 189830 189830 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43242 SAMTools SNP 189881 189881 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43242 SAMTools SNP 189896 189896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43242 SAMTools SNP 190103 190103 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43242 SAMTools SNP 190547 190547 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43242 SAMTools SNP 190556 190556 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43242 SAMTools SNP 194327 194327 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold43242 SAMTools SNP 194807 194807 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.67%2C5.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43242 SAMTools SNP 194861 194861 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C206:99 scaffold43242 SAMTools SNP 195079 195079 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43242 SAMTools SNP 195097 195097 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43242 SAMTools SNP 195157 195157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43242 SAMTools SNP 196249 196249 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43242 SAMTools SNP 196273 196273 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C175:99 scaffold43242 SAMTools SNP 196420 196420 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold43242 SAMTools SNP 197126 197126 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.2%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43242 SAMTools SNP 197127 197127 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43242 SAMTools SNP 197519 197519 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43242 SAMTools SNP 198528 198528 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C245:51 scaffold43242 SAMTools SNP 202407 202407 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43242 SAMTools SNP 232457 232457 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43244 SAMTools SNP 520 520 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43244 SAMTools SNP 552 552 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43244 SAMTools SNP 560 560 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43244 SAMTools SNP 28576 28576 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43244 SAMTools SNP 28624 28624 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43244 SAMTools SNP 53190 53190 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C0:4 scaffold43244 SAMTools SNP 60990 60990 41.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold43244 SAMTools SNP 61566 61566 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43244 SAMTools SNP 63178 63178 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold43244 SAMTools SNP 74065 74065 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43244 SAMTools SNP 77042 77042 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43244 SAMTools SNP 87643 87643 6.59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold43244 SAMTools SNP 90488 90488 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold43244 SAMTools SNP 91251 91251 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold43244 SAMTools SNP 91309 91309 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C54%2C0:99 scaffold43244 SAMTools SNP 103943 103943 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43244 SAMTools SNP 106605 106605 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43244 SAMTools SNP 111376 111376 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43244 SAMTools SNP 111445 111445 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43244 SAMTools SNP 118976 118976 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C42%2C0:81 scaffold43244 SAMTools SNP 119602 119602 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D44%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43244 SAMTools SNP 173058 173058 4.45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C12%2C0:11 scaffold43244 SAMTools SNP 177605 177605 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43244 SAMTools SNP 178417 178417 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.64%2C1%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43244 SAMTools SNP 178978 178978 139 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43244 SAMTools SNP 179004 179004 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.036%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43244 SAMTools SNP 179029 179029 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.37%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C76:79 scaffold43244 SAMTools SNP 179085 179085 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C73:76 scaffold43244 SAMTools SNP 179384 179384 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0039%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43244 SAMTools SNP 179427 179427 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.012%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43244 SAMTools SNP 180405 180405 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0015%2C0.46%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43244 SAMTools SNP 180438 180438 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.23%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43244 SAMTools SNP 180495 180495 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C174:99 scaffold43244 SAMTools SNP 180774 180774 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0047%2C0.25%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold43244 SAMTools SNP 181145 181145 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43244 SAMTools SNP 184978 184978 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43244 SAMTools SNP 185974 185974 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.19%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43244 SAMTools SNP 186148 186148 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D5.1e-05%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold43244 SAMTools SNP 188398 188398 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43244 SAMTools SNP 190064 190064 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.21%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C184:99 scaffold43244 SAMTools SNP 204001 204001 21.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold43244 SAMTools SNP 214916 214916 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 6223 6223 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 6359 6359 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C46:49 scaffold43258 SAMTools SNP 8965 8965 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43258 SAMTools SNP 9243 9243 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 10828 10828 51.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43258 SAMTools SNP 10868 10868 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43258 SAMTools SNP 11567 11567 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C12%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold43258 SAMTools SNP 11624 11624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43258 SAMTools SNP 12913 12913 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43258 SAMTools SNP 13582 13582 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C18%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C234:99 scaffold43258 SAMTools SNP 13790 13790 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43258 SAMTools SNP 15594 15594 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43258 SAMTools SNP 15628 15628 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43258 SAMTools SNP 15629 15629 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 15851 15851 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43258 SAMTools SNP 17492 17492 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold43258 SAMTools SNP 17537 17537 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold43258 SAMTools SNP 18571 18571 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold43258 SAMTools SNP 18778 18778 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43258 SAMTools SNP 34744 34744 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.032%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold43258 SAMTools SNP 37747 37747 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 38406 38406 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43258 SAMTools SNP 38426 38426 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43258 SAMTools SNP 70187 70187 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 70205 70205 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 72108 72108 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 72215 72215 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 72574 72574 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C35:38 scaffold43258 SAMTools SNP 90765 90765 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold43258 SAMTools SNP 153151 153151 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 153174 153174 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 204870 204870 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43258 SAMTools SNP 205309 205309 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43258 SAMTools SNP 205335 205335 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43258 SAMTools SNP 205685 205685 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43258 SAMTools SNP 207986 207986 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C2%2C5%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43258 SAMTools SNP 207988 207988 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0261%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.037%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43258 SAMTools SNP 211188 211188 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43258 SAMTools SNP 212595 212595 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.58%2C3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C249:72 scaffold43258 SAMTools SNP 213072 213072 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C63%2C0:99 scaffold43258 SAMTools SNP 213092 213092 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C48%2C0:93 scaffold43258 SAMTools SNP 213519 213519 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C249:99 scaffold43258 SAMTools SNP 214689 214689 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43258 SAMTools SNP 214712 214712 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 214739 214739 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold43258 SAMTools SNP 214753 214753 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold43258 SAMTools SNP 214812 214812 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43258 SAMTools SNP 215218 215218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43258 SAMTools SNP 215339 215339 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold43258 SAMTools SNP 215347 215347 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C11%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43258 SAMTools SNP 216093 216093 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C2%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.11%2C0.028%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43258 SAMTools SNP 216114 216114 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.14%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43258 SAMTools SNP 216252 216252 57.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold43258 SAMTools SNP 216512 216512 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.15%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold43258 SAMTools SNP 216844 216844 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 218843 218843 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C144:99 scaffold43258 SAMTools SNP 218908 218908 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C137:89 scaffold43258 SAMTools SNP 218987 218987 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43258 SAMTools SNP 219281 219281 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43258 SAMTools SNP 219295 219295 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold43258 SAMTools SNP 219407 219407 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold43258 SAMTools SNP 219806 219806 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C60%2C0:99 scaffold43258 SAMTools SNP 219902 219902 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 219905 219905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43258 SAMTools SNP 220419 220419 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43258 SAMTools SNP 220493 220493 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold43258 SAMTools SNP 220505 220505 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43258 SAMTools SNP 222366 222366 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43258 SAMTools SNP 222441 222441 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0035%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43258 SAMTools SNP 222447 222447 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.1%2C0.19%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43258 SAMTools SNP 223503 223503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C10%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold43258 SAMTools SNP 223566 223566 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C21%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.5%2C4.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C7:10 scaffold43258 SAMTools SNP 223614 223614 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43258 SAMTools SNP 223641 223641 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.018%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43258 SAMTools SNP 227643 227643 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C2%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43258 SAMTools SNP 230336 230336 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C136:60 scaffold43272 SAMTools SNP 2234 2234 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43272 SAMTools SNP 2266 2266 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43272 SAMTools SNP 6360 6360 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 8456 8456 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 8597 8597 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43272 SAMTools SNP 9042 9042 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43272 SAMTools SNP 9993 9993 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.00073%2C1.9e-08%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C224:46 scaffold43272 SAMTools SNP 10722 10722 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43272 SAMTools SNP 10926 10926 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold43272 SAMTools SNP 11502 11502 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43272 SAMTools SNP 11517 11517 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43272 SAMTools SNP 12073 12073 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.015%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43272 SAMTools SNP 12713 12713 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.16%2C0.42%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43272 SAMTools SNP 13313 13313 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.31%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold43272 SAMTools SNP 13325 13325 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43272 SAMTools SNP 14292 14292 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold43272 SAMTools SNP 14318 14318 88 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold43272 SAMTools SNP 17300 17300 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43272 SAMTools SNP 17414 17414 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D47%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C96%2C0:99 scaffold43272 SAMTools SNP 19264 19264 145 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D31%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C39%2C0:75 scaffold43272 SAMTools SNP 19315 19315 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C21%2C0:39 scaffold43272 SAMTools SNP 19336 19336 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.29%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold43272 SAMTools SNP 20267 20267 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43272 SAMTools SNP 20804 20804 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C0.0019%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43272 SAMTools SNP 20869 20869 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C3%2C10%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43272 SAMTools SNP 21099 21099 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C7%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.13%2C1.4e-13%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43272 SAMTools SNP 21150 21150 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C216:99 scaffold43272 SAMTools SNP 23254 23254 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold43272 SAMTools SNP 23762 23762 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 24963 24963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C38%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43272 SAMTools SNP 26336 26336 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.3%2C0.29%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43272 SAMTools SNP 26342 26342 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.00012%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43272 SAMTools SNP 26495 26495 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43272 SAMTools SNP 27794 27794 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43272 SAMTools SNP 27857 27857 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43272 SAMTools SNP 30143 30143 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 30159 30159 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 32055 32055 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43272 SAMTools SNP 32248 32248 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.41%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43272 SAMTools SNP 36715 36715 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 37013 37013 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43272 SAMTools SNP 39646 39646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 40184 40184 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 50984 50984 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43272 SAMTools SNP 51979 51979 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 52007 52007 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43272 SAMTools SNP 56289 56289 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43272 SAMTools SNP 56291 56291 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43272 SAMTools SNP 56430 56430 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43272 SAMTools SNP 68734 68734 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43272 SAMTools SNP 70956 70956 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43272 SAMTools SNP 70957 70957 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43272 SAMTools SNP 87232 87232 69.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold43272 SAMTools SNP 87262 87262 76.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold43272 SAMTools SNP 87671 87671 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C230:36 scaffold43272 SAMTools SNP 91693 91693 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 91734 91734 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 93225 93225 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43272 SAMTools SNP 104273 104273 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 104282 104282 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43272 SAMTools SNP 138322 138322 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43272 SAMTools SNP 138349 138349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43272 SAMTools SNP 138784 138784 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43272 SAMTools SNP 139547 139547 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43272 SAMTools SNP 139548 139548 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.21%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold43272 SAMTools SNP 139593 139593 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold43272 SAMTools SNP 139622 139622 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43272 SAMTools SNP 141026 141026 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C17%2C8%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold43272 SAMTools SNP 141884 141884 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43272 SAMTools SNP 145839 145839 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43272 SAMTools SNP 147083 147083 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.024%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold43272 SAMTools SNP 147713 147713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold43272 SAMTools SNP 147752 147752 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold43272 SAMTools SNP 147779 147779 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43272 SAMTools SNP 148443 148443 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43272 SAMTools SNP 148455 148455 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43272 SAMTools SNP 156814 156814 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0061%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C109:46 scaffold43272 SAMTools SNP 156853 156853 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C171:59 scaffold43272 SAMTools SNP 156958 156958 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43272 SAMTools SNP 157938 157938 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43272 SAMTools SNP 157955 157955 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43278 SAMTools SNP 451 451 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 76451 76451 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C6.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43278 SAMTools SNP 76721 76721 41.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold43278 SAMTools SNP 77617 77617 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.037%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold43278 SAMTools SNP 82975 82975 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43278 SAMTools SNP 88778 88778 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C8%2C19%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.58%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43278 SAMTools SNP 88890 88890 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 89704 89704 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 89922 89922 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C9.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C247:99 scaffold43278 SAMTools SNP 90412 90412 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C24%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43278 SAMTools SNP 90520 90520 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C7%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43278 SAMTools SNP 90547 90547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.2%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 94528 94528 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.0015%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 94549 94549 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43278 SAMTools SNP 95404 95404 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43278 SAMTools SNP 95439 95439 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43278 SAMTools SNP 96361 96361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43278 SAMTools SNP 96791 96791 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold43278 SAMTools SNP 98726 98726 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43278 SAMTools SNP 98945 98945 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C63%2C0:99 scaffold43278 SAMTools SNP 99249 99249 35.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold43278 SAMTools SNP 99491 99491 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold43278 SAMTools SNP 99972 99972 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C27%2C0:47 scaffold43278 SAMTools SNP 101777 101777 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C27%2C0:51 scaffold43278 SAMTools SNP 102266 102266 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold43278 SAMTools SNP 114186 114186 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold43278 SAMTools SNP 114253 114253 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43278 SAMTools SNP 114304 114304 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43278 SAMTools SNP 117328 117328 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43278 SAMTools SNP 117359 117359 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43278 SAMTools SNP 122394 122394 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43278 SAMTools SNP 136707 136707 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43278 SAMTools SNP 139613 139613 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43278 SAMTools SNP 139762 139762 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 140002 140002 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43278 SAMTools SNP 143280 143280 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 147339 147339 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 151873 151873 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43278 SAMTools SNP 151905 151905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.3%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 151915 151915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43278 SAMTools SNP 157784 157784 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43278 SAMTools SNP 157824 157824 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 157830 157830 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-8.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C19:22 scaffold43278 SAMTools SNP 158178 158178 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.34%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C18:21 scaffold43278 SAMTools SNP 158223 158223 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C40%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold43278 SAMTools SNP 160852 160852 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C92%2C0%2C42%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0011%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43278 SAMTools SNP 160918 160918 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C1%2C5%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.64%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold43278 SAMTools SNP 160924 160924 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C32%2C0%2C9%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.092%2C1.6e-08%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43278 SAMTools SNP 163319 163319 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 163433 163433 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43278 SAMTools SNP 163869 163869 14.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold43278 SAMTools SNP 166430 166430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43278 SAMTools SNP 166831 166831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C0%3BMQ%3D50%3BFQ%3D-167%3BPV4%3D0.016%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C140%2C0:99 scaffold43278 SAMTools SNP 166947 166947 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C4%2C84%3BMQ%3D50%3BFQ%3D81%3BPV4%3D2.1e-09%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C108:99 scaffold43278 SAMTools SNP 166994 166994 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C272%2C58%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0059%2C4.5e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43278 SAMTools SNP 168274 168274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C9%3BMQ%3D50%3BFQ%3D-131%3BPV4%3D1%2C0.49%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C0:99 scaffold43278 SAMTools SNP 168573 168573 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C100%2C41%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.3%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43278 SAMTools SNP 168642 168642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C21%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C6.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 168872 168872 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C43%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 168893 168893 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C9%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43278 SAMTools SNP 168965 168965 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C33%2C0%2C13%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43278 SAMTools SNP 168968 168968 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C32%2C1%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold43278 SAMTools SNP 169198 169198 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C25%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.38%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 169243 169243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C17%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 169481 169481 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C38%2C4%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.72%2C0.03%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43278 SAMTools SNP 169552 169552 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.19%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43278 SAMTools SNP 169848 169848 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 171658 171658 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C18%2C3%2C11%3BMQ%3D50%3BFQ%3D125%3BPV4%3D5.9e-05%2C0.094%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43278 SAMTools SNP 171754 171754 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C64%2C1%2C47%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.8e-82%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43278 SAMTools SNP 171775 171775 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold43278 SAMTools SNP 172268 172268 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 180711 180711 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold43278 SAMTools SNP 180918 180918 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold43278 SAMTools SNP 195523 195523 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43278 SAMTools SNP 195541 195541 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43278 SAMTools SNP 196565 196565 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.00051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C205:39 scaffold43278 SAMTools SNP 196663 196663 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C130:39 scaffold43278 SAMTools SNP 196728 196728 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43278 SAMTools SNP 196734 196734 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold43278 SAMTools SNP 197046 197046 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43278 SAMTools SNP 197091 197091 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold43278 SAMTools SNP 197103 197103 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43278 SAMTools SNP 201423 201423 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold43278 SAMTools SNP 201461 201461 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.058%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold43278 SAMTools SNP 201466 201466 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.089%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold43278 SAMTools SNP 201740 201740 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 201765 201765 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 203075 203075 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43278 SAMTools SNP 203159 203159 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43278 SAMTools SNP 203943 203943 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43278 SAMTools SNP 207804 207804 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43278 SAMTools SNP 208926 208926 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43278 SAMTools SNP 209081 209081 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43278 SAMTools SNP 210216 210216 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43278 SAMTools SNP 210641 210641 30.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold43278 SAMTools SNP 210856 210856 18.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold43278 SAMTools SNP 210871 210871 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C2.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C240:99 scaffold43278 SAMTools SNP 210897 210897 41.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43278 SAMTools SNP 214815 214815 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold43278 SAMTools SNP 222687 222687 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold43278 SAMTools SNP 222772 222772 16.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43278 SAMTools SNP 227317 227317 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43280 SAMTools SNP 22002 22002 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.06%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C31:32 scaffold43280 SAMTools SNP 27414 27414 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C40:43 scaffold43280 SAMTools SNP 27452 27452 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D47%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C180:99 scaffold43280 SAMTools SNP 28298 28298 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C1%3BMQ%3D49%3BFQ%3D39%3BPV4%3D0.17%2C1%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C237:69 scaffold43280 SAMTools SNP 28336 28336 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold43280 SAMTools SNP 28339 28339 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C105:99 scaffold43280 SAMTools SNP 28343 28343 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43280 SAMTools SNP 28882 28882 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43280 SAMTools SNP 29063 29063 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43280 SAMTools SNP 29231 29231 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43280 SAMTools SNP 29868 29868 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43280 SAMTools SNP 31456 31456 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43280 SAMTools SNP 65636 65636 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43280 SAMTools SNP 85057 85057 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43280 SAMTools SNP 147524 147524 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43280 SAMTools SNP 184066 184066 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43280 SAMTools SNP 184453 184453 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43280 SAMTools SNP 234467 234467 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43280 SAMTools SNP 234499 234499 57.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold43280 SAMTools SNP 234538 234538 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D7.15%3BPV4%3D0.33%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C41:34 scaffold43280 SAMTools SNP 234628 234628 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43280 SAMTools SNP 234637 234637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43280 SAMTools SNP 234851 234851 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43280 SAMTools SNP 234954 234954 5.45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-119%3BPV4%3D0.00053%2C5.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C92%2C0:45 scaffold43280 SAMTools SNP 236227 236227 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold43280 SAMTools SNP 236471 236471 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43280 SAMTools SNP 236521 236521 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43280 SAMTools SNP 236820 236820 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43280 SAMTools SNP 236836 236836 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43290 SAMTools SNP 865 865 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 2447 2447 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 3033 3033 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C78%2C0:99 scaffold43290 SAMTools SNP 3153 3153 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C75%2C0:99 scaffold43290 SAMTools SNP 8263 8263 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0054%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C62:41 scaffold43290 SAMTools SNP 10009 10009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C13%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43290 SAMTools SNP 11106 11106 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.29%2C0.49%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43290 SAMTools SNP 13344 13344 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43290 SAMTools SNP 13776 13776 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C51%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43290 SAMTools SNP 14079 14079 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C12%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C132%2C0:99 scaffold43290 SAMTools SNP 14424 14424 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43290 SAMTools SNP 15241 15241 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C96%2C0:99 scaffold43290 SAMTools SNP 17746 17746 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43290 SAMTools SNP 18528 18528 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43290 SAMTools SNP 20058 20058 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43290 SAMTools SNP 20893 20893 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 21022 21022 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.33%2C0.0019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C80:55 scaffold43290 SAMTools SNP 25402 25402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43290 SAMTools SNP 25465 25465 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43290 SAMTools SNP 25871 25871 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 26058 26058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C56%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43290 SAMTools SNP 26652 26652 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C2%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.069%2C0.00084%2C1%2C2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43290 SAMTools SNP 26709 26709 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C1%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43290 SAMTools SNP 26716 26716 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C64%2C0%2C13%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43290 SAMTools SNP 27050 27050 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C15%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C249:99 scaffold43290 SAMTools SNP 34105 34105 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C6%2C27%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.35%2C5.9e-64%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43290 SAMTools SNP 36915 36915 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.48%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43290 SAMTools SNP 37607 37607 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43290 SAMTools SNP 37621 37621 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold43290 SAMTools SNP 38069 38069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 38075 38075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43290 SAMTools SNP 38732 38732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43290 SAMTools SNP 39682 39682 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43290 SAMTools SNP 40589 40589 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43290 SAMTools SNP 40920 40920 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C5%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43290 SAMTools SNP 41177 41177 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 41982 41982 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.23%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 43097 43097 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43290 SAMTools SNP 72079 72079 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43290 SAMTools SNP 79265 79265 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 99522 99522 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0017%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43290 SAMTools SNP 100146 100146 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.47%2C6.8e-13%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C129:70 scaffold43290 SAMTools SNP 101662 101662 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold43290 SAMTools SNP 104262 104262 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold43290 SAMTools SNP 111484 111484 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43290 SAMTools SNP 112285 112285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C63%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold43290 SAMTools SNP 127392 127392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 128163 128163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold43290 SAMTools SNP 128178 128178 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.022%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43290 SAMTools SNP 129184 129184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 129826 129826 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43290 SAMTools SNP 129837 129837 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C0.23%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold43290 SAMTools SNP 129849 129849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43290 SAMTools SNP 130157 130157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43290 SAMTools SNP 130821 130821 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 131571 131571 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C33%2C0:63 scaffold43290 SAMTools SNP 131583 131583 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.094%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43290 SAMTools SNP 131919 131919 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.13%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43290 SAMTools SNP 133763 133763 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.12%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 133790 133790 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43290 SAMTools SNP 135971 135971 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C14%2C8%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.69%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43290 SAMTools SNP 136063 136063 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C10%2C43%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.026%2C2.3e-54%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C210:99 scaffold43290 SAMTools SNP 144342 144342 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43290 SAMTools SNP 144343 144343 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43290 SAMTools SNP 145071 145071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43290 SAMTools SNP 145092 145092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold43290 SAMTools SNP 145164 145164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.28%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold43290 SAMTools SNP 145367 145367 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.077%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43290 SAMTools SNP 145440 145440 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C140:99 scaffold43290 SAMTools SNP 145787 145787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43290 SAMTools SNP 145817 145817 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43290 SAMTools SNP 146231 146231 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C21%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 146696 146696 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C135%2C1%2C45%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43290 SAMTools SNP 146732 146732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43290 SAMTools SNP 146750 146750 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D0.004%2C3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C24:27 scaffold43290 SAMTools SNP 146994 146994 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C157%2C0:99 scaffold43290 SAMTools SNP 151297 151297 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43290 SAMTools SNP 151338 151338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43290 SAMTools SNP 152782 152782 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C59:62 scaffold43290 SAMTools SNP 152847 152847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43290 SAMTools SNP 153032 153032 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold43290 SAMTools SNP 153037 153037 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.26%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold43290 SAMTools SNP 153056 153056 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43290 SAMTools SNP 153433 153433 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43290 SAMTools SNP 153449 153449 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43290 SAMTools SNP 153456 153456 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43290 SAMTools SNP 154138 154138 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43290 SAMTools SNP 155794 155794 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold43290 SAMTools SNP 162030 162030 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C4%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.7%2C3.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43290 SAMTools SNP 164628 164628 20.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold43290 SAMTools SNP 166551 166551 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C75%2C0:99 scaffold43290 SAMTools SNP 166611 166611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43290 SAMTools SNP 166879 166879 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold43290 SAMTools SNP 166908 166908 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43290 SAMTools SNP 171138 171138 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C22%3BMQ%3D41%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43290 SAMTools SNP 177009 177009 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 177019 177019 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43290 SAMTools SNP 178172 178172 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold43290 SAMTools SNP 179194 179194 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43290 SAMTools SNP 199198 199198 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43290 SAMTools SNP 199201 199201 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43290 SAMTools SNP 200225 200225 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43290 SAMTools SNP 201766 201766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 210187 210187 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43290 SAMTools SNP 210799 210799 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.024%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C145:71 scaffold43290 SAMTools SNP 210990 210990 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43290 SAMTools SNP 211084 211084 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold43290 SAMTools SNP 211096 211096 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.28%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43290 SAMTools SNP 211555 211555 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C154:99 scaffold43290 SAMTools SNP 211636 211636 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold43290 SAMTools SNP 212044 212044 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold43290 SAMTools SNP 212074 212074 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.041%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C245:99 scaffold43290 SAMTools SNP 212773 212773 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43290 SAMTools SNP 213696 213696 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43290 SAMTools SNP 214077 214077 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.36%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C167:99 scaffold43290 SAMTools SNP 214110 214110 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.43%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold43290 SAMTools SNP 214125 214125 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold43290 SAMTools SNP 215303 215303 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 215478 215478 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 215538 215538 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 215871 215871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 218468 218468 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 218632 218632 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold43290 SAMTools SNP 218647 218647 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold43290 SAMTools SNP 218677 218677 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43290 SAMTools SNP 224069 224069 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43290 SAMTools SNP 227881 227881 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C42%2C34%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C6.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 228016 228016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43290 SAMTools SNP 228535 228535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C15%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold43290 SAMTools SNP 228547 228547 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43290 SAMTools SNP 229402 229402 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43290 SAMTools SNP 230885 230885 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43290 SAMTools SNP 230921 230921 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43290 SAMTools SNP 230967 230967 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43290 SAMTools SNP 231336 231336 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43290 SAMTools SNP 232217 232217 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43290 SAMTools SNP 235914 235914 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2524%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D623%2C1142%2C98%2C302%3BMQ%3D50%3BFQ%3D31%3BPV4%3D2.9e-05%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43290 SAMTools SNP 235920 235920 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2598%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D616%2C1143%2C81%2C296%3BMQ%3D50%3BFQ%3D129%3BPV4%3D2.4e-07%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold43290 SAMTools SNP 236094 236094 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1992%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D831%2C204%2C870%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-15%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43290 SAMTools SNP 236975 236975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1975%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C1699%2C265%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43290 SAMTools SNP 237050 237050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1661%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43296 SAMTools SNP 5200 5200 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 7540 7540 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43296 SAMTools SNP 15477 15477 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43296 SAMTools SNP 16305 16305 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43296 SAMTools SNP 18361 18361 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43296 SAMTools SNP 18379 18379 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43296 SAMTools SNP 22968 22968 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C134:44 scaffold43296 SAMTools SNP 23347 23347 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold43296 SAMTools SNP 24738 24738 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.08%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43296 SAMTools SNP 29400 29400 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold43296 SAMTools SNP 46917 46917 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43296 SAMTools SNP 48599 48599 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43296 SAMTools SNP 48704 48704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 48723 48723 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43296 SAMTools SNP 49135 49135 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43296 SAMTools SNP 49731 49731 18.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold43296 SAMTools SNP 49764 49764 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D20%3BPV4%3D0.14%2C6e-08%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C71:50 scaffold43296 SAMTools SNP 52439 52439 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold43296 SAMTools SNP 52781 52781 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43296 SAMTools SNP 53281 53281 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43296 SAMTools SNP 54234 54234 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43296 SAMTools SNP 54331 54331 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43296 SAMTools SNP 54336 54336 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43296 SAMTools SNP 54362 54362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43296 SAMTools SNP 57175 57175 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43296 SAMTools SNP 57275 57275 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43296 SAMTools SNP 57308 57308 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C104:99 scaffold43296 SAMTools SNP 57818 57818 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C91:42 scaffold43296 SAMTools SNP 57943 57943 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43296 SAMTools SNP 58334 58334 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43296 SAMTools SNP 68657 68657 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold43296 SAMTools SNP 69508 69508 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43296 SAMTools SNP 71500 71500 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43296 SAMTools SNP 72517 72517 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43296 SAMTools SNP 72943 72943 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C5.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C241:99 scaffold43296 SAMTools SNP 73185 73185 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.38%2C7.9e-25%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold43296 SAMTools SNP 73251 73251 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43296 SAMTools SNP 73576 73576 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43296 SAMTools SNP 73683 73683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43296 SAMTools SNP 74274 74274 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C51%2C0:99 scaffold43296 SAMTools SNP 74392 74392 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43296 SAMTools SNP 74395 74395 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.22%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold43296 SAMTools SNP 75581 75581 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 79979 79979 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C25%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C208:99 scaffold43296 SAMTools SNP 81306 81306 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43296 SAMTools SNP 94179 94179 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold43296 SAMTools SNP 94475 94475 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C42%2C0:81 scaffold43296 SAMTools SNP 94901 94901 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold43296 SAMTools SNP 95103 95103 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43296 SAMTools SNP 96713 96713 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.4%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43296 SAMTools SNP 96770 96770 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43296 SAMTools SNP 99603 99603 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold43296 SAMTools SNP 99810 99810 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43296 SAMTools SNP 101986 101986 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43296 SAMTools SNP 102016 102016 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43296 SAMTools SNP 102180 102180 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43296 SAMTools SNP 102209 102209 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold43296 SAMTools SNP 102786 102786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 102792 102792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 106048 106048 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 106763 106763 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C48%2C0:90 scaffold43296 SAMTools SNP 121496 121496 6.79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43296 SAMTools SNP 122953 122953 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43296 SAMTools SNP 123022 123022 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C77:47 scaffold43296 SAMTools SNP 124260 124260 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43296 SAMTools SNP 147517 147517 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43296 SAMTools SNP 147543 147543 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43296 SAMTools SNP 147605 147605 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43296 SAMTools SNP 148007 148007 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43296 SAMTools SNP 148050 148050 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 150724 150724 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43296 SAMTools SNP 150745 150745 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold43296 SAMTools SNP 152735 152735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43296 SAMTools SNP 152761 152761 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43296 SAMTools SNP 152774 152774 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold43296 SAMTools SNP 153306 153306 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 153315 153315 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43296 SAMTools SNP 154160 154160 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43296 SAMTools SNP 154202 154202 58.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold43296 SAMTools SNP 155381 155381 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43296 SAMTools SNP 156330 156330 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43296 SAMTools SNP 159650 159650 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold43296 SAMTools SNP 159794 159794 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C33:36 scaffold43296 SAMTools SNP 166816 166816 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43296 SAMTools SNP 167963 167963 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43296 SAMTools SNP 218312 218312 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43296 SAMTools SNP 218336 218336 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold433 SAMTools SNP 26733 26733 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 26882 26882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 26954 26954 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 29879 29879 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold433 SAMTools SNP 30194 30194 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 30220 30220 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 36840 36840 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold433 SAMTools SNP 37289 37289 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold433 SAMTools SNP 37355 37355 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold433 SAMTools SNP 37814 37814 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.53%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C207:99 scaffold433 SAMTools SNP 39945 39945 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold433 SAMTools SNP 40289 40289 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 42518 42518 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 42900 42900 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 42938 42938 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 43259 43259 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold433 SAMTools SNP 43286 43286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold433 SAMTools SNP 43559 43559 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold433 SAMTools SNP 47177 47177 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold433 SAMTools SNP 48667 48667 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold433 SAMTools SNP 48673 48673 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold433 SAMTools SNP 48782 48782 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold433 SAMTools SNP 49273 49273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold433 SAMTools SNP 49330 49330 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold433 SAMTools SNP 55655 55655 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.018%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold433 SAMTools SNP 55663 55663 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00068%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold433 SAMTools SNP 55970 55970 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold433 SAMTools SNP 58429 58429 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 58493 58493 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold433 SAMTools SNP 58961 58961 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 61779 61779 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold433 SAMTools SNP 62292 62292 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold433 SAMTools SNP 71596 71596 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 71608 71608 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 72018 72018 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold433 SAMTools SNP 74414 74414 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C1.4e-07%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C116:34 scaffold433 SAMTools SNP 74822 74822 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold433 SAMTools SNP 79472 79472 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold433 SAMTools SNP 81299 81299 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold433 SAMTools SNP 81306 81306 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C152:99 scaffold433 SAMTools SNP 81359 81359 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D4.2e-05%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold433 SAMTools SNP 82579 82579 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold433 SAMTools SNP 82624 82624 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold433 SAMTools SNP 94043 94043 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 97360 97360 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C97%2C83%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1.2e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold433 SAMTools SNP 98230 98230 186 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C93%2C0%2C54%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.017%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold433 SAMTools SNP 98293 98293 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.26%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 98562 98562 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.61%2C0.35%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold433 SAMTools SNP 98586 98586 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold433 SAMTools SNP 98898 98898 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C35%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.038%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 101937 101937 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 101961 101961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 101975 101975 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 104478 104478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold433 SAMTools SNP 105262 105262 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold433 SAMTools SNP 105604 105604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C5%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 105613 105613 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C90%2C21%2C4%3BMQ%3D50%3BFQ%3D212%3BPV4%3D4.9e-15%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold433 SAMTools SNP 105876 105876 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold433 SAMTools SNP 105879 105879 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0025%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C213:99 scaffold433 SAMTools SNP 105909 105909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold433 SAMTools SNP 108537 108537 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C16%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C12%2C0:21 scaffold433 SAMTools SNP 112116 112116 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.6e-21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold433 SAMTools SNP 113723 113723 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold433 SAMTools SNP 113751 113751 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 114982 114982 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold433 SAMTools SNP 115037 115037 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold433 SAMTools SNP 116814 116814 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold433 SAMTools SNP 118784 118784 56.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold433 SAMTools SNP 123428 123428 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 123512 123512 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 123844 123844 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.49%2C6.8e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold433 SAMTools SNP 123876 123876 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.15%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold433 SAMTools SNP 130904 130904 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C54%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 130916 130916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 130952 130952 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C34%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold433 SAMTools SNP 130973 130973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C9%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 133775 133775 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C10%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.17%2C1%2C1%2C5.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold433 SAMTools SNP 134400 134400 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold433 SAMTools SNP 134821 134821 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold433 SAMTools SNP 134834 134834 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 135200 135200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold433 SAMTools SNP 135972 135972 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 136701 136701 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold433 SAMTools SNP 137016 137016 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold433 SAMTools SNP 137061 137061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.076%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 137293 137293 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold433 SAMTools SNP 139994 139994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold433 SAMTools SNP 140033 140033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold433 SAMTools SNP 140111 140111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold433 SAMTools SNP 140138 140138 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.39%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold433 SAMTools SNP 140643 140643 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold433 SAMTools SNP 140688 140688 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 140694 140694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold433 SAMTools SNP 140707 140707 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.46%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold433 SAMTools SNP 141894 141894 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold433 SAMTools SNP 142098 142098 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold433 SAMTools SNP 143646 143646 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C63%2C0:99 scaffold433 SAMTools SNP 143695 143695 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C54%2C0:99 scaffold433 SAMTools SNP 145194 145194 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C33%2C0:62 scaffold433 SAMTools SNP 146007 146007 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold433 SAMTools SNP 146763 146763 30.5 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D651%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C24%2C12%2C58%2C0%2C55:21 scaffold433 SAMTools SNP 147884 147884 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C63%2C3%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 147991 147991 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C18%2C7%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.46%2C0.16%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold433 SAMTools SNP 148009 148009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C15%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C0.46%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 149005 149005 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C55%2C30%2C5%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.00069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold433 SAMTools SNP 149044 149044 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C108%2C24%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-05%2C1%2C1%2C5.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 149077 149077 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C110%2C48%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 149429 149429 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C38%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 149798 149798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 155874 155874 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold433 SAMTools SNP 159485 159485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold433 SAMTools SNP 182420 182420 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold433 SAMTools SNP 185272 185272 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C12%2C3%3BMQ%3D44%3BFQ%3D-48%3BPV4%3D0.27%2C0.15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold433 SAMTools SNP 185326 185326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C3%2C12%3BMQ%3D46%3BFQ%3D-52%3BPV4%3D1%2C0.22%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold433 SAMTools SNP 185534 185534 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold433 SAMTools SNP 185825 185825 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold433 SAMTools SNP 185837 185837 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 185888 185888 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold433 SAMTools SNP 186148 186148 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold433 SAMTools SNP 191763 191763 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C30%2C0:57 scaffold433 SAMTools SNP 192590 192590 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold433 SAMTools SNP 242343 242343 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.51%2C0.008%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold433 SAMTools SNP 247683 247683 22.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold433 SAMTools SNP 308605 308605 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 309167 309167 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold433 SAMTools SNP 310491 310491 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 312807 312807 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0034%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold433 SAMTools SNP 315665 315665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 315717 315717 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold433 SAMTools SNP 333497 333497 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold433 SAMTools SNP 333498 333498 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold433 SAMTools SNP 338406 338406 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C0%3BMQ%3D48%3BFQ%3D36%3BPV4%3D0.12%2C3.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold433 SAMTools SNP 347826 347826 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.082%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C221:34 scaffold433 SAMTools SNP 347832 347832 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.24%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold433 SAMTools SNP 348963 348963 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.061%2C0.0051%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C231:74 scaffold433 SAMTools SNP 349178 349178 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold433 SAMTools SNP 350965 350965 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold433 SAMTools SNP 351237 351237 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold433 SAMTools SNP 352474 352474 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 353014 353014 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 353039 353039 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 360763 360763 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C25%3BMQ%3D50%3BFQ%3D220%3BPV4%3D7.1e-06%2C0.33%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold433 SAMTools SNP 360797 360797 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C111%3BMQ%3D50%3BFQ%3D140%3BPV4%3D5.9e-07%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold433 SAMTools SNP 361178 361178 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.034%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold433 SAMTools SNP 361811 361811 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C136:39 scaffold433 SAMTools SNP 362044 362044 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C9%2C375%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.00048%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold433 SAMTools SNP 362658 362658 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold433 SAMTools SNP 363346 363346 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C5%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 363392 363392 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.093%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold433 SAMTools SNP 365484 365484 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C220%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 365550 365550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C125%2C42%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.046%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold433 SAMTools SNP 366087 366087 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C155%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C58:61 scaffold433 SAMTools SNP 379651 379651 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 380047 380047 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 380259 380259 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 380482 380482 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 380663 380663 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold433 SAMTools SNP 380725 380725 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 381251 381251 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold433 SAMTools SNP 434699 434699 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1.2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C239:99 scaffold433 SAMTools SNP 435641 435641 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold433 SAMTools SNP 435742 435742 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.58%2C1.7e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold433 SAMTools SNP 435766 435766 69 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C64%2C40%2C109%2C0%2C94:45 scaffold433 SAMTools SNP 436240 436240 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C69%2C0:99 scaffold433 SAMTools SNP 436325 436325 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C227:99 scaffold433 SAMTools SNP 438100 438100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold433 SAMTools SNP 438116 438116 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold433 SAMTools SNP 438950 438950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold433 SAMTools SNP 438959 438959 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold433 SAMTools SNP 439034 439034 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.19%2C0.34%2C1%2C6.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C251:99 scaffold433 SAMTools SNP 439163 439163 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 439738 439738 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D0.065%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C7:10 scaffold433 SAMTools SNP 439768 439768 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C33%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold433 SAMTools SNP 440134 440134 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C41%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold433 SAMTools SNP 442863 442863 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C5%2C507%2C5%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1.4e-06%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 444006 444006 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold433 SAMTools SNP 444094 444094 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C63%2C0:99 scaffold433 SAMTools SNP 444159 444159 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C176:48 scaffold433 SAMTools SNP 445187 445187 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.00025%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold433 SAMTools SNP 459100 459100 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold433 SAMTools SNP 459952 459952 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold433 SAMTools SNP 475074 475074 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold433 SAMTools SNP 475421 475421 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C27%2C0:51 scaffold433 SAMTools SNP 475769 475769 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold433 SAMTools SNP 475986 475986 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold433 SAMTools SNP 476280 476280 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 476447 476447 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold433 SAMTools SNP 476456 476456 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold433 SAMTools SNP 476676 476676 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C21%2C0:39 scaffold433 SAMTools SNP 477316 477316 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold433 SAMTools SNP 478494 478494 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C217:72 scaffold433 SAMTools SNP 478532 478532 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 478595 478595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold433 SAMTools SNP 479197 479197 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.25%2C0.48%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold433 SAMTools SNP 479364 479364 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 482915 482915 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold433 SAMTools SNP 483730 483730 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 484053 484053 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.68%2C0.016%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold433 SAMTools SNP 486196 486196 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold433 SAMTools SNP 486627 486627 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold433 SAMTools SNP 486995 486995 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0051%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold433 SAMTools SNP 487007 487007 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold433 SAMTools SNP 487037 487037 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C15%2C0:27 scaffold433 SAMTools SNP 487120 487120 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 487454 487454 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold433 SAMTools SNP 487458 487458 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold433 SAMTools SNP 487469 487469 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold433 SAMTools SNP 487606 487606 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold433 SAMTools SNP 490419 490419 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C0.24%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C80:73 scaffold433 SAMTools SNP 490443 490443 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold433 SAMTools SNP 490509 490509 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C209:72 scaffold433 SAMTools SNP 495698 495698 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 499716 499716 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C203:60 scaffold433 SAMTools SNP 499723 499723 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1130%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D682%2C0%2C448%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.17%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 500145 500145 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold433 SAMTools SNP 500229 500229 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 500281 500281 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 500946 500946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1360%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C442%2C164%2C579%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.0016%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 500970 500970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D565%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C460%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 501016 501016 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D731%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C408%2C280%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 501176 501176 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D745%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D248%2C180%2C159%2C156%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C8.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 501361 501361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1590%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C248%2C973%2C205%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-65%2C1.8e-25%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 501529 501529 33.5 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C9%2C61%2C0%2C58:21 scaffold433 SAMTools SNP 501613 501613 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C94%2C126%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 501634 501634 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold433 SAMTools SNP 501644 501644 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold433 SAMTools SNP 501745 501745 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C84%2C181%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 501967 501967 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C216%2C31%2C153%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.38%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 501976 501976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C344%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 502364 502364 59.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D523%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold433 SAMTools SNP 502421 502421 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C103%2C34%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1.7e-15%2C2.2e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold433 SAMTools SNP 502613 502613 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2474%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2473%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C255%2C0:99 scaffold433 SAMTools SNP 528437 528437 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold433 SAMTools SNP 543202 543202 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C5%2C11%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.13%2C4.9e-39%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold433 SAMTools SNP 543588 543588 79.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold433 SAMTools SNP 543631 543631 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C17%2C0%2C18%3BMQ%3D50%3BFQ%3D23%3BPV4%3D3.3e-10%2C6.6e-24%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold433 SAMTools SNP 560928 560928 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C2%2C20%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.12%2C1.8e-36%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold433 SAMTools SNP 574372 574372 104 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold433 SAMTools SNP 577697 577697 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.029%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold433 SAMTools SNP 577701 577701 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 579483 579483 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 580048 580048 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold433 SAMTools SNP 580553 580553 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 580859 580859 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 581545 581545 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold433 SAMTools SNP 581594 581594 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 581618 581618 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 582493 582493 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold433 SAMTools SNP 582499 582499 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold433 SAMTools SNP 582767 582767 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 583585 583585 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold433 SAMTools SNP 583669 583669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold433 SAMTools SNP 584055 584055 36.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold433 SAMTools SNP 584111 584111 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold433 SAMTools SNP 584144 584144 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold433 SAMTools SNP 584393 584393 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold433 SAMTools SNP 584922 584922 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold433 SAMTools SNP 584973 584973 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 586430 586430 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C27%2C0:51 scaffold433 SAMTools SNP 586742 586742 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold433 SAMTools SNP 586793 586793 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C30%2C0:57 scaffold433 SAMTools SNP 587228 587228 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold433 SAMTools SNP 587570 587570 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 587610 587610 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 587685 587685 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 588441 588441 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 588708 588708 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 589613 589613 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold433 SAMTools SNP 590568 590568 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 590577 590577 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 590718 590718 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold433 SAMTools SNP 591169 591169 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C211:34 scaffold433 SAMTools SNP 591183 591183 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C110:49 scaffold433 SAMTools SNP 592123 592123 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C21%2C0:39 scaffold433 SAMTools SNP 592933 592933 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold433 SAMTools SNP 593364 593364 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 593393 593393 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold433 SAMTools SNP 593441 593441 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C155:99 scaffold433 SAMTools SNP 593513 593513 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold433 SAMTools SNP 593926 593926 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 593927 593927 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 596874 596874 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 596904 596904 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 597537 597537 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 597567 597567 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 597615 597615 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 598109 598109 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 598176 598176 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 598636 598636 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold433 SAMTools SNP 598702 598702 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold433 SAMTools SNP 599145 599145 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 599154 599154 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 599884 599884 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold433 SAMTools SNP 600316 600316 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 600476 600476 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.027%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold433 SAMTools SNP 600484 600484 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 600761 600761 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 600806 600806 23.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold433 SAMTools SNP 601325 601325 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 602608 602608 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 602636 602636 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 602784 602784 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 602785 602785 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 604755 604755 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold433 SAMTools SNP 604810 604810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold433 SAMTools SNP 608056 608056 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 609170 609170 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 609349 609349 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold433 SAMTools SNP 609434 609434 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold433 SAMTools SNP 609479 609479 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold433 SAMTools SNP 610999 610999 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C92:95 scaffold433 SAMTools SNP 611119 611119 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold433 SAMTools SNP 611627 611627 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold433 SAMTools SNP 611661 611661 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold433 SAMTools SNP 611678 611678 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold433 SAMTools SNP 613842 613842 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 613878 613878 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 614538 614538 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 614770 614770 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 616381 616381 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold433 SAMTools SNP 616396 616396 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold433 SAMTools SNP 616435 616435 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold433 SAMTools SNP 616486 616486 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.47%2C0.28%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C210:99 scaffold433 SAMTools SNP 616498 616498 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C210:99 scaffold433 SAMTools SNP 616884 616884 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C0.0046%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C180:99 scaffold433 SAMTools SNP 616890 616890 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.19%2C0.16%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C180:99 scaffold433 SAMTools SNP 617025 617025 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C135:77 scaffold433 SAMTools SNP 617207 617207 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 617717 617717 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold433 SAMTools SNP 618472 618472 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C171:99 scaffold433 SAMTools SNP 619586 619586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold433 SAMTools SNP 619702 619702 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold433 SAMTools SNP 619929 619929 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold433 SAMTools SNP 619992 619992 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold433 SAMTools SNP 620457 620457 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold433 SAMTools SNP 620499 620499 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C0.0021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C99:99 scaffold433 SAMTools SNP 620626 620626 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.087%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C216:33 scaffold433 SAMTools SNP 621010 621010 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold433 SAMTools SNP 623850 623850 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold433 SAMTools SNP 624261 624261 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold433 SAMTools SNP 624494 624494 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold433 SAMTools SNP 624548 624548 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold433 SAMTools SNP 624565 624565 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold433 SAMTools SNP 624869 624869 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold433 SAMTools SNP 624890 624890 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 625343 625343 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold433 SAMTools SNP 628957 628957 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold433 SAMTools SNP 629032 629032 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold433 SAMTools SNP 629065 629065 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold433 SAMTools SNP 629512 629512 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 629513 629513 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 629542 629542 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold433 SAMTools SNP 629593 629593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 630144 630144 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold433 SAMTools SNP 630146 630146 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold433 SAMTools SNP 630245 630245 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold433 SAMTools SNP 630886 630886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 630916 630916 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 630925 630925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 630994 630994 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.13%2C2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold433 SAMTools SNP 631075 631075 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold433 SAMTools SNP 631474 631474 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.16%2C0.36%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold433 SAMTools SNP 631486 631486 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold433 SAMTools SNP 632038 632038 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold433 SAMTools SNP 632071 632071 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold433 SAMTools SNP 632194 632194 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold433 SAMTools SNP 632206 632206 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold433 SAMTools SNP 632649 632649 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 633088 633088 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.53%2C3.3e-06%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold433 SAMTools SNP 633866 633866 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold433 SAMTools SNP 634377 634377 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C28%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C247:99 scaffold433 SAMTools SNP 634551 634551 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold433 SAMTools SNP 634552 634552 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold433 SAMTools SNP 634555 634555 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold433 SAMTools SNP 635793 635793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold433 SAMTools SNP 636436 636436 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C9%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.005%2C8.6e-07%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold433 SAMTools SNP 637402 637402 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 638415 638415 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0038%2C0.072%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold433 SAMTools SNP 639395 639395 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C17%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D2.7e-09%2C2.1e-29%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold433 SAMTools SNP 640002 640002 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold433 SAMTools SNP 640114 640114 76 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C36%2C3%2C96%2C0%2C89:63 scaffold433 SAMTools SNP 640420 640420 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.038%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold433 SAMTools SNP 641277 641277 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold433 SAMTools SNP 641298 641298 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold433 SAMTools SNP 641394 641394 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 641433 641433 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.15%2C0.00082%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold433 SAMTools SNP 641461 641461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold433 SAMTools SNP 641931 641931 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 642321 642321 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold433 SAMTools SNP 642375 642375 23.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold433 SAMTools SNP 642420 642420 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold433 SAMTools SNP 642468 642468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold433 SAMTools SNP 642845 642845 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 642932 642932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold433 SAMTools SNP 643296 643296 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.0017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold433 SAMTools SNP 643380 643380 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.25%2C0.00011%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold433 SAMTools SNP 645669 645669 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C28%2C37%2C22%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.72%2C8.3e-89%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold433 SAMTools SNP 646294 646294 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold433 SAMTools SNP 646361 646361 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.00024%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold433 SAMTools SNP 646896 646896 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C30%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold433 SAMTools SNP 646956 646956 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold433 SAMTools SNP 647486 647486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C36%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 647540 647540 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold433 SAMTools SNP 647961 647961 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold433 SAMTools SNP 647985 647985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 648402 648402 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 648486 648486 211 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C12%2C238%2C0%2C253:17 scaffold433 SAMTools SNP 648837 648837 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C12%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.0002%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 649107 649107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C31%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 649855 649855 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C10%2C4%2C12%3BMQ%3D50%3BFQ%3D218%3BPV4%3D5.2e-06%2C1%2C1%2C7.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold433 SAMTools SNP 650340 650340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 650463 650463 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C18%2C14%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.38%2C5.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold433 SAMTools SNP 650600 650600 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C9%2C6%2C26%3BMQ%3D50%3BFQ%3D191%3BPV4%3D3.7e-15%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold433 SAMTools SNP 651094 651094 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C22%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D2.8e-07%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold433 SAMTools SNP 651780 651780 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C38%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold433 SAMTools SNP 651907 651907 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C117%2C0:99 scaffold433 SAMTools SNP 652224 652224 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold433 SAMTools SNP 652227 652227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold433 SAMTools SNP 652282 652282 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold433 SAMTools SNP 654580 654580 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 654604 654604 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D49%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C217:84 scaffold433 SAMTools SNP 654643 654643 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C176:88 scaffold433 SAMTools SNP 654850 654850 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold433 SAMTools SNP 654895 654895 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold433 SAMTools SNP 654913 654913 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold433 SAMTools SNP 655416 655416 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold433 SAMTools SNP 661232 661232 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D23%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C42%2C0:81 scaffold433 SAMTools SNP 661435 661435 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D37%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C66%2C0:99 scaffold433 SAMTools SNP 661456 661456 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D40%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold433 SAMTools SNP 661861 661861 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold433 SAMTools SNP 664822 664822 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D30%2C0%2C4%2C0%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C212:31 scaffold433 SAMTools SNP 665076 665076 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 670642 670642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C27%3BMQ%3D45%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold433 SAMTools SNP 670648 670648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C24%3BMQ%3D46%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold433 SAMTools SNP 670810 670810 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold433 SAMTools SNP 670850 670850 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 670944 670944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 670945 670945 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 672734 672734 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold433 SAMTools SNP 672923 672923 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold433 SAMTools SNP 678582 678582 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 678592 678592 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold433 SAMTools SNP 679279 679279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 679444 679444 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 679456 679456 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C25%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D2.5e-10%2C2.4e-08%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold433 SAMTools SNP 679458 679458 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.014%2C0.0048%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold433 SAMTools SNP 682705 682705 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold433 SAMTools SNP 683789 683789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold433 SAMTools SNP 683861 683861 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C69%2C0:99 scaffold433 SAMTools SNP 683918 683918 35.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold433 SAMTools SNP 684386 684386 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 684934 684934 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold433 SAMTools SNP 684936 684936 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold433 SAMTools SNP 684958 684958 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.24%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold433 SAMTools SNP 702946 702946 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D0.027%2C3.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C61%2C0:70 scaffold433 SAMTools SNP 703365 703365 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold433 SAMTools SNP 703459 703459 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 704062 704062 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 706007 706007 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold433 SAMTools SNP 707491 707491 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold433 SAMTools SNP 710633 710633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold433 SAMTools SNP 710693 710693 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 710936 710936 103 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C47%2C38%2C132%2C0%2C129:16 scaffold433 SAMTools SNP 721675 721675 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold433 SAMTools SNP 727878 727878 18.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold433 SAMTools SNP 727902 727902 56.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold433 SAMTools SNP 736087 736087 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.055%2C7.8e-05%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold433 SAMTools SNP 736140 736140 39.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold433 SAMTools SNP 736222 736222 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold433 SAMTools SNP 736227 736227 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold433 SAMTools SNP 740148 740148 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold433 SAMTools SNP 740488 740488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold433 SAMTools SNP 768501 768501 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold433 SAMTools SNP 768523 768523 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 768554 768554 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold433 SAMTools SNP 772424 772424 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C152:99 scaffold433 SAMTools SNP 775254 775254 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 778161 778161 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 778167 778167 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C41:44 scaffold433 SAMTools SNP 778317 778317 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 778346 778346 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold433 SAMTools SNP 779917 779917 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold433 SAMTools SNP 779965 779965 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold433 SAMTools SNP 780648 780648 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold433 SAMTools SNP 780711 780711 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.2%3BPV4%3D1%2C0.061%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C49:38 scaffold433 SAMTools SNP 780930 780930 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.27%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C246:99 scaffold433 SAMTools SNP 794645 794645 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold433 SAMTools SNP 808421 808421 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold433 SAMTools SNP 816708 816708 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold433 SAMTools SNP 816717 816717 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold433 SAMTools SNP 817062 817062 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C183:73 scaffold433 SAMTools SNP 817112 817112 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold433 SAMTools SNP 817133 817133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold433 SAMTools SNP 817362 817362 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C48%2C6%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold433 SAMTools SNP 817793 817793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C40%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold433 SAMTools SNP 818163 818163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C44%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.00077%2C0.38%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold433 SAMTools SNP 818597 818597 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.055%2C1.4e-05%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold433 SAMTools SNP 819576 819576 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C110:99 scaffold433 SAMTools SNP 819985 819985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C41%2C35%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.00053%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 820271 820271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C19%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 820628 820628 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C76%2C23%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.09%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 821263 821263 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C75%2C10%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 821335 821335 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 821344 821344 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C32%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1.3e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 823660 823660 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.28%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C199:98 scaffold433 SAMTools SNP 824952 824952 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold433 SAMTools SNP 825000 825000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold433 SAMTools SNP 825290 825290 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold433 SAMTools SNP 825308 825308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C36%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold433 SAMTools SNP 825542 825542 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 825919 825919 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C32%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold433 SAMTools SNP 826150 826150 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 826186 826186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 826567 826567 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C2%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.0057%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 827177 827177 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C10%2C69%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.0096%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 827351 827351 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C15%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 827369 827369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C65%2C12%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 827882 827882 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 827969 827969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold433 SAMTools SNP 828635 828635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 828710 828710 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C50%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.24%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 829339 829339 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 829363 829363 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C9%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.0001%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 829494 829494 46.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.13%2C0.00011%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C2:5 scaffold433 SAMTools SNP 829588 829588 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C56%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C235%2C0:99 scaffold433 SAMTools SNP 829717 829717 34.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold433 SAMTools SNP 830004 830004 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C6%2C16%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0012%2C3.2e-38%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold433 SAMTools SNP 830041 830041 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold433 SAMTools SNP 830089 830089 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C25%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D0.47%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C91%2C0:99 scaffold433 SAMTools SNP 830236 830236 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C54%2C0:99 scaffold433 SAMTools SNP 831376 831376 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C58%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.63%2C5.2e-81%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold433 SAMTools SNP 831760 831760 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C0%2C14%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.003%2C1%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold433 SAMTools SNP 832114 832114 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C237:99 scaffold433 SAMTools SNP 832609 832609 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold433 SAMTools SNP 833597 833597 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold433 SAMTools SNP 838717 838717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold433 SAMTools SNP 839573 839573 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold433 SAMTools SNP 841260 841260 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold433 SAMTools SNP 846222 846222 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 847025 847025 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C344%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 847058 847058 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C8%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold433 SAMTools SNP 847129 847129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C233%2C34%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 847136 847136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C78%2C30%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 847715 847715 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C35%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.15%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold433 SAMTools SNP 847748 847748 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C11%2C28%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.017%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold433 SAMTools SNP 849105 849105 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.19%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold433 SAMTools SNP 849138 849138 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 849439 849439 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C36%2C0:69 scaffold433 SAMTools SNP 849589 849589 50.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold433 SAMTools SNP 849875 849875 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold433 SAMTools SNP 850776 850776 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C6.1e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 850821 850821 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold433 SAMTools SNP 850833 850833 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C28%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.00012%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold433 SAMTools SNP 851066 851066 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C12%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold433 SAMTools SNP 851129 851129 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C3%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.037%2C0.4%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold433 SAMTools SNP 851642 851642 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C42%2C0:81 scaffold433 SAMTools SNP 853067 853067 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold433 SAMTools SNP 853153 853153 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0069%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C224:36 scaffold433 SAMTools SNP 853296 853296 48.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold433 SAMTools SNP 865459 865459 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold433 SAMTools SNP 874627 874627 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold433 SAMTools SNP 874641 874641 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C222:53 scaffold433 SAMTools SNP 874826 874826 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 874830 874830 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 874840 874840 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.1%2C1.1e-08%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C110:52 scaffold433 SAMTools SNP 875677 875677 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D34%2C18%2C19%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.17%2C2.3e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold433 SAMTools SNP 877329 877329 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.2%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C80:76 scaffold433 SAMTools SNP 890205 890205 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold433 SAMTools SNP 897080 897080 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold433 SAMTools SNP 897323 897323 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold433 SAMTools SNP 897693 897693 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold433 SAMTools SNP 899853 899853 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.024%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C168:43 scaffold433 SAMTools SNP 967224 967224 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 980445 980445 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.29%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C131:33 scaffold433 SAMTools SNP 996392 996392 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C139:34 scaffold433 SAMTools SNP 996437 996437 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold433 SAMTools SNP 997054 997054 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C36%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 997099 997099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C6%2C41%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C5.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1000609 1000609 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold433 SAMTools SNP 1001770 1001770 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C43%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1006003 1006003 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold433 SAMTools SNP 1006908 1006908 21.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold433 SAMTools SNP 1007180 1007180 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold433 SAMTools SNP 1010597 1010597 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold433 SAMTools SNP 1011263 1011263 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold433 SAMTools SNP 1011546 1011546 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D500%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C70%2C227%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C8.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1011570 1011570 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C94%2C56%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.48%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1012270 1012270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1041%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D433%2C66%2C199%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1012303 1012303 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D873%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C164%2C71%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.005%2C1%2C1.1e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1012342 1012342 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D927%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C227%2C35%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-06%2C1%2C1%2C9.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1012923 1012923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1074%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D356%2C206%2C296%2C216%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.31%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1012941 1012941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D882%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C661%2C221%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 1013511 1013511 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 1013574 1013574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D870%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C217%2C648%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 1013663 1013663 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C161%3BMQ%3D50%3BFQ%3D-104;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C178:99 scaffold433 SAMTools SNP 1013932 1013932 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C26%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.36%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C218:99 scaffold433 SAMTools SNP 1014525 1014525 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold433 SAMTools SNP 1017106 1017106 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D34%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C51%2C0:99 scaffold433 SAMTools SNP 1017361 1017361 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C36%2C20%2C49%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.2e-08%2C1.9e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1017370 1017370 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C63%2C86%2C47%3BMQ%3D49%3BFQ%3D225%3BPV4%3D6e-09%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1017519 1017519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C63%2C86%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-10%2C0.00048%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1017537 1017537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C107%2C7%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1017553 1017553 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C29%2C105%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold433 SAMTools SNP 1018016 1018016 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C106%2C72%2C30%3BMQ%3D50%3BFQ%3D222%3BPV4%3D4.1e-29%2C1.3e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold433 SAMTools SNP 1018169 1018169 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C68%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C208%2C0:99 scaffold433 SAMTools SNP 1019002 1019002 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 1019096 1019096 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C35%2C27%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0099%2C6.7e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1019251 1019251 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C110%2C2%2C12%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.61%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold433 SAMTools SNP 1021621 1021621 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold433 SAMTools SNP 1022234 1022234 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C160:62 scaffold433 SAMTools SNP 1024064 1024064 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C68%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold433 SAMTools SNP 1024128 1024128 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold433 SAMTools SNP 1024788 1024788 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 1025081 1025081 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.6%3BPV4%3D1%2C0.02%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C38:40 scaffold433 SAMTools SNP 1025139 1025139 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C23:26 scaffold433 SAMTools SNP 1025218 1025218 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold433 SAMTools SNP 1029721 1029721 3.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold433 SAMTools SNP 1030793 1030793 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 1076645 1076645 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1079539 1079539 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.0051%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold433 SAMTools SNP 1079650 1079650 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D9.5e-06%2C0.028%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold433 SAMTools SNP 1079656 1079656 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D147%3BPV4%3D5.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold433 SAMTools SNP 1079927 1079927 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.00088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold433 SAMTools SNP 1079933 1079933 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C6%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.0026%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold433 SAMTools SNP 1080071 1080071 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold433 SAMTools SNP 1089523 1089523 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold433 SAMTools SNP 1089556 1089556 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold433 SAMTools SNP 1089582 1089582 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold433 SAMTools SNP 1089623 1089623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold433 SAMTools SNP 1089912 1089912 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold433 SAMTools SNP 1092442 1092442 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold433 SAMTools SNP 1092444 1092444 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold433 SAMTools SNP 1094287 1094287 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold433 SAMTools SNP 1094350 1094350 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1094647 1094647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1095554 1095554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C18%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold433 SAMTools SNP 1097866 1097866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C20%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1102051 1102051 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1102157 1102157 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold433 SAMTools SNP 1103692 1103692 159 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C33%2C0%2C173%2C3%2C170:63 scaffold433 SAMTools SNP 1105470 1105470 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold433 SAMTools SNP 1110224 1110224 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C18%2C0:33 scaffold433 SAMTools SNP 1110570 1110570 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1110595 1110595 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.024%2C2.4e-11%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold433 SAMTools SNP 1118441 1118441 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold433 SAMTools SNP 1119037 1119037 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.23%2C4.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold433 SAMTools SNP 1119793 1119793 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold433 SAMTools SNP 1120045 1120045 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C36%2C0:69 scaffold433 SAMTools SNP 1123714 1123714 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C7%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.3%2C8.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold433 SAMTools SNP 1123835 1123835 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold433 SAMTools SNP 1124063 1124063 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold433 SAMTools SNP 1124066 1124066 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold433 SAMTools SNP 1124114 1124114 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 1124120 1124120 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold433 SAMTools SNP 1124306 1124306 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 1124330 1124330 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold433 SAMTools SNP 1124381 1124381 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold433 SAMTools SNP 1124542 1124542 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold433 SAMTools SNP 1124569 1124569 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold433 SAMTools SNP 1125162 1125162 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold433 SAMTools SNP 1125189 1125189 173 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.25%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C106:99 scaffold433 SAMTools SNP 1125252 1125252 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.56%2C0.007%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold433 SAMTools SNP 1126031 1126031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold433 SAMTools SNP 1126057 1126057 163 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C110:99 scaffold433 SAMTools SNP 1126407 1126407 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.17%2C0.0061%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C193:99 scaffold433 SAMTools SNP 1126436 1126436 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold433 SAMTools SNP 1126492 1126492 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold433 SAMTools SNP 1127134 1127134 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold433 SAMTools SNP 1127396 1127396 96.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold433 SAMTools SNP 1127445 1127445 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold433 SAMTools SNP 1129073 1129073 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 1129507 1129507 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold433 SAMTools SNP 1129627 1129627 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold433 SAMTools SNP 1130036 1130036 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold433 SAMTools SNP 1130068 1130068 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 1130758 1130758 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 1132630 1132630 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 1132663 1132663 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold433 SAMTools SNP 1140115 1140115 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold433 SAMTools SNP 1142775 1142775 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold433 SAMTools SNP 1156146 1156146 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold433 SAMTools SNP 1180549 1180549 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold433 SAMTools SNP 1193463 1193463 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold433 SAMTools SNP 1266188 1266188 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold433 SAMTools SNP 1274159 1274159 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C3%2C7%2C0%3BMQ%3D49%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C219:63 scaffold433 SAMTools SNP 1274187 1274187 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D104%3BPV4%3D2e-11%2C5.9e-11%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold433 SAMTools SNP 1274188 1274188 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C14%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold433 SAMTools SNP 1277156 1277156 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C126%2C32%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1277161 1277161 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D47%2C220%2C0%2C81%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D2.7e-06%2C1.2e-45%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold433 SAMTools SNP 1277177 1277177 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C91%2C7%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1277189 1277189 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C125%2C18%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1277557 1277557 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C45%2C8%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold433 SAMTools SNP 1280139 1280139 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C24%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.26%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C50:53 scaffold433 SAMTools SNP 1280160 1280160 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C4.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold433 SAMTools SNP 1280175 1280175 21.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold433 SAMTools SNP 1280639 1280639 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold433 SAMTools SNP 1280755 1280755 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold433 SAMTools SNP 1280923 1280923 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C39%2C0:71 scaffold433 SAMTools SNP 1284601 1284601 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.4e-38%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43302 SAMTools SNP 2368 2368 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43302 SAMTools SNP 4614 4614 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 4987 4987 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43302 SAMTools SNP 5494 5494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 23996 23996 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 24221 24221 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43302 SAMTools SNP 25198 25198 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold43302 SAMTools SNP 32427 32427 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43302 SAMTools SNP 33479 33479 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.26%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43302 SAMTools SNP 34186 34186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 34207 34207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43302 SAMTools SNP 34210 34210 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C11%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43302 SAMTools SNP 34270 34270 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 34537 34537 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43302 SAMTools SNP 34888 34888 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43302 SAMTools SNP 35067 35067 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43302 SAMTools SNP 35109 35109 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 35444 35444 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 36211 36211 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43302 SAMTools SNP 36229 36229 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43302 SAMTools SNP 36241 36241 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.02%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43302 SAMTools SNP 36641 36641 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C10%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.12%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold43302 SAMTools SNP 37806 37806 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43302 SAMTools SNP 39795 39795 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43302 SAMTools SNP 40365 40365 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43302 SAMTools SNP 40390 40390 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43302 SAMTools SNP 40800 40800 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold43302 SAMTools SNP 40857 40857 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C4%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.12%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold43302 SAMTools SNP 40860 40860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43302 SAMTools SNP 41200 41200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43302 SAMTools SNP 41218 41218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 41434 41434 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C69%2C0:99 scaffold43302 SAMTools SNP 41503 41503 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C75%2C0:99 scaffold43302 SAMTools SNP 41515 41515 37.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C21%2C0:39 scaffold43302 SAMTools SNP 42606 42606 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 42852 42852 47.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43302 SAMTools SNP 43154 43154 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C48:43 scaffold43302 SAMTools SNP 43494 43494 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C255%2C0:99 scaffold43302 SAMTools SNP 43870 43870 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold43302 SAMTools SNP 50023 50023 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4e-08%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C202:61 scaffold43302 SAMTools SNP 54620 54620 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 54653 54653 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold43302 SAMTools SNP 54729 54729 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 55286 55286 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43302 SAMTools SNP 55537 55537 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 55578 55578 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43302 SAMTools SNP 55587 55587 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43302 SAMTools SNP 56058 56058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C13%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43302 SAMTools SNP 56073 56073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 64890 64890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43302 SAMTools SNP 64929 64929 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43302 SAMTools SNP 64937 64937 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43302 SAMTools SNP 64971 64971 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 64996 64996 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43302 SAMTools SNP 66355 66355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 66410 66410 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 66743 66743 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43302 SAMTools SNP 68465 68465 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 68519 68519 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 68877 68877 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 68880 68880 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C23:26 scaffold43302 SAMTools SNP 69338 69338 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43302 SAMTools SNP 69345 69345 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43302 SAMTools SNP 69347 69347 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43302 SAMTools SNP 69362 69362 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 69458 69458 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.026%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43302 SAMTools SNP 69865 69865 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.019%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C207:99 scaffold43302 SAMTools SNP 69898 69898 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43302 SAMTools SNP 70000 70000 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43302 SAMTools SNP 70408 70408 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43302 SAMTools SNP 71665 71665 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold43302 SAMTools SNP 71734 71734 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold43302 SAMTools SNP 71839 71839 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold43302 SAMTools SNP 72582 72582 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43302 SAMTools SNP 75352 75352 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold43302 SAMTools SNP 75388 75388 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold43302 SAMTools SNP 75400 75400 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43302 SAMTools SNP 75873 75873 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C199:66 scaffold43302 SAMTools SNP 75922 75922 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43302 SAMTools SNP 78085 78085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43302 SAMTools SNP 80749 80749 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C39%2C0:75 scaffold43302 SAMTools SNP 80908 80908 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C66%2C0:99 scaffold43302 SAMTools SNP 80930 80930 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold43302 SAMTools SNP 81184 81184 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C39%2C0:75 scaffold43302 SAMTools SNP 81505 81505 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold43302 SAMTools SNP 81715 81715 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43302 SAMTools SNP 82475 82475 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43302 SAMTools SNP 82608 82608 14.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43302 SAMTools SNP 85190 85190 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C27%2C0:51 scaffold43302 SAMTools SNP 85652 85652 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C213:48 scaffold43302 SAMTools SNP 85672 85672 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C226:99 scaffold43302 SAMTools SNP 85675 85675 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C226:99 scaffold43302 SAMTools SNP 85753 85753 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 86631 86631 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43302 SAMTools SNP 86635 86635 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43302 SAMTools SNP 87640 87640 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 87850 87850 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43302 SAMTools SNP 87878 87878 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43302 SAMTools SNP 87943 87943 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43302 SAMTools SNP 88209 88209 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold43302 SAMTools SNP 88260 88260 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.13%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold43302 SAMTools SNP 88262 88262 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.32%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold43302 SAMTools SNP 88594 88594 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.34%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43302 SAMTools SNP 88620 88620 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43302 SAMTools SNP 88629 88629 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43302 SAMTools SNP 88662 88662 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C0.0097%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43302 SAMTools SNP 88695 88695 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43302 SAMTools SNP 89023 89023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0017%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold43302 SAMTools SNP 89474 89474 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43302 SAMTools SNP 99656 99656 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold43302 SAMTools SNP 99705 99705 7.39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold43302 SAMTools SNP 101875 101875 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C64%2C1%2C103%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00016%2C1.6e-120%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43302 SAMTools SNP 102013 102013 45.3 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C39%2C24%2C76%2C0%2C70:27 scaffold43302 SAMTools SNP 102061 102061 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43302 SAMTools SNP 102148 102148 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold43302 SAMTools SNP 105737 105737 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43302 SAMTools SNP 107056 107056 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43302 SAMTools SNP 107064 107064 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43302 SAMTools SNP 107246 107246 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43302 SAMTools SNP 107678 107678 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C28%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43302 SAMTools SNP 107720 107720 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C31%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43302 SAMTools SNP 107946 107946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43302 SAMTools SNP 108115 108115 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 108341 108341 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43302 SAMTools SNP 108608 108608 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43302 SAMTools SNP 108667 108667 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.28%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold43302 SAMTools SNP 115007 115007 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43302 SAMTools SNP 115081 115081 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 116775 116775 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43302 SAMTools SNP 117258 117258 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43302 SAMTools SNP 118597 118597 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43302 SAMTools SNP 118600 118600 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C127:99 scaffold43302 SAMTools SNP 118609 118609 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.24%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold43302 SAMTools SNP 119175 119175 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43302 SAMTools SNP 119201 119201 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43302 SAMTools SNP 119224 119224 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 119389 119389 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 119430 119430 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43302 SAMTools SNP 124984 124984 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 126091 126091 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 126095 126095 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold43302 SAMTools SNP 168226 168226 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43302 SAMTools SNP 170518 170518 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C71%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C214%2C0:99 scaffold43302 SAMTools SNP 170554 170554 12.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold43302 SAMTools SNP 174237 174237 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C94%2C5%2C16%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43302 SAMTools SNP 174252 174252 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C61%2C4%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.056%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43302 SAMTools SNP 174327 174327 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.13%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43302 SAMTools SNP 174732 174732 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43302 SAMTools SNP 175197 175197 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43302 SAMTools SNP 175663 175663 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43302 SAMTools SNP 176140 176140 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C146:99 scaffold43302 SAMTools SNP 177498 177498 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43302 SAMTools SNP 177553 177553 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43302 SAMTools SNP 179754 179754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43302 SAMTools SNP 179861 179861 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C166:58 scaffold43302 SAMTools SNP 204452 204452 52.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold43302 SAMTools SNP 205469 205469 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 205503 205503 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43302 SAMTools SNP 211518 211518 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 10645 10645 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43314 SAMTools SNP 69753 69753 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43314 SAMTools SNP 97945 97945 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43314 SAMTools SNP 98137 98137 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43314 SAMTools SNP 98152 98152 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43314 SAMTools SNP 98196 98196 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 136624 136624 4.75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold43314 SAMTools SNP 151931 151931 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43314 SAMTools SNP 156913 156913 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 180330 180330 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43314 SAMTools SNP 180396 180396 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C1%3BMQ%3D49%3BFQ%3D-22%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold43314 SAMTools SNP 180861 180861 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43314 SAMTools SNP 180971 180971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43314 SAMTools SNP 181668 181668 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold43314 SAMTools SNP 181755 181755 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold43314 SAMTools SNP 196558 196558 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43314 SAMTools SNP 196570 196570 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D91%3BPV4%3D7.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold43314 SAMTools SNP 196684 196684 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C38%3BMQ%3D50%3BFQ%3D-145%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C118%2C0:99 scaffold43314 SAMTools SNP 201599 201599 36.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold43314 SAMTools SNP 202558 202558 57.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold43314 SAMTools SNP 202645 202645 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43314 SAMTools SNP 202717 202717 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43314 SAMTools SNP 202743 202743 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold43314 SAMTools SNP 202853 202853 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C31%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C148%2C0:99 scaffold43314 SAMTools SNP 202915 202915 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C255%2C0:99 scaffold43314 SAMTools SNP 208798 208798 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43314 SAMTools SNP 209157 209157 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold43314 SAMTools SNP 209892 209892 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.33%2C7.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C138:74 scaffold43314 SAMTools SNP 210456 210456 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43314 SAMTools SNP 213628 213628 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 213669 213669 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43314 SAMTools SNP 215083 215083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C48%2C43%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43314 SAMTools SNP 216321 216321 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C52%2C12%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D8.2e-09%2C3.1e-07%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43314 SAMTools SNP 216361 216361 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C41%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.18%2C0.15%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43314 SAMTools SNP 219284 219284 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43314 SAMTools SNP 222826 222826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43314 SAMTools SNP 222832 222832 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C60%2C0:99 scaffold43314 SAMTools SNP 224116 224116 8.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43314 SAMTools SNP 224524 224524 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43314 SAMTools SNP 226830 226830 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C100:40 scaffold43314 SAMTools SNP 226838 226838 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 226843 226843 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C174:74 scaffold43314 SAMTools SNP 227107 227107 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C242:99 scaffold43314 SAMTools SNP 227791 227791 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C9%2C13%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.015%2C8.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43314 SAMTools SNP 230107 230107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43314 SAMTools SNP 230852 230852 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43314 SAMTools SNP 239764 239764 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43340 SAMTools SNP 191 191 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43340 SAMTools SNP 245 245 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43340 SAMTools SNP 23092 23092 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 23387 23387 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43340 SAMTools SNP 23939 23939 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43340 SAMTools SNP 24188 24188 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 24205 24205 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43340 SAMTools SNP 24442 24442 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43340 SAMTools SNP 24820 24820 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 24951 24951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43340 SAMTools SNP 24962 24962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 25195 25195 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43340 SAMTools SNP 25309 25309 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43340 SAMTools SNP 26331 26331 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43340 SAMTools SNP 28995 28995 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C12%2C64%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 28996 28996 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C11%2C70%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 29214 29214 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C23%2C31%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 29313 29313 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 29823 29823 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 29967 29967 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43340 SAMTools SNP 29977 29977 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43340 SAMTools SNP 30310 30310 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C25%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.00023%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 31515 31515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C33%2C39%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 31536 31536 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C59%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 31557 31557 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 32047 32047 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D0.19%2C1%2C1%2C2.8e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold43340 SAMTools SNP 32107 32107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C39%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43340 SAMTools SNP 32583 32583 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C19%2C0%2C13%3BMQ%3D50%3BFQ%3D80%3BPV4%3D9.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43340 SAMTools SNP 32658 32658 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 33462 33462 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C41%2C0%2C10%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.025%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43340 SAMTools SNP 33525 33525 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C27%2C0:51 scaffold43340 SAMTools SNP 54634 54634 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 59558 59558 6.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43340 SAMTools SNP 88671 88671 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C29%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C144%2C0:99 scaffold43340 SAMTools SNP 89698 89698 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43340 SAMTools SNP 90432 90432 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C30%2C0:56 scaffold43340 SAMTools SNP 114891 114891 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 114935 114935 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.042%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C231:99 scaffold43340 SAMTools SNP 116278 116278 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C140%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.022%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold43340 SAMTools SNP 116790 116790 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43340 SAMTools SNP 117083 117083 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43340 SAMTools SNP 117133 117133 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43340 SAMTools SNP 119015 119015 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C39%2C0:75 scaffold43340 SAMTools SNP 120047 120047 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C63%2C0:99 scaffold43340 SAMTools SNP 123751 123751 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.0013%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold43340 SAMTools SNP 124499 124499 227 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold43340 SAMTools SNP 124562 124562 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.58%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43340 SAMTools SNP 124845 124845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43340 SAMTools SNP 124948 124948 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43340 SAMTools SNP 125250 125250 173 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0%2C201%2C8%2C198:39 scaffold43340 SAMTools SNP 125271 125271 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold43340 SAMTools SNP 125313 125313 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.088%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold43340 SAMTools SNP 125646 125646 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.037%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43340 SAMTools SNP 126218 126218 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 126654 126654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43340 SAMTools SNP 126665 126665 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43340 SAMTools SNP 126678 126678 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43340 SAMTools SNP 127221 127221 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C43%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43340 SAMTools SNP 127969 127969 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C25%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43340 SAMTools SNP 128000 128000 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.07%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43340 SAMTools SNP 128053 128053 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43340 SAMTools SNP 128077 128077 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43340 SAMTools SNP 128478 128478 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43340 SAMTools SNP 128505 128505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43340 SAMTools SNP 128506 128506 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43340 SAMTools SNP 129088 129088 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold43340 SAMTools SNP 129139 129139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43340 SAMTools SNP 129804 129804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C20%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold43340 SAMTools SNP 129828 129828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C16%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.08%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold43340 SAMTools SNP 129923 129923 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold43340 SAMTools SNP 130806 130806 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C27%2C47%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1.4e-07%2C2.6e-27%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43340 SAMTools SNP 130895 130895 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C27%2C30%2C73%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1.8e-10%2C3.7e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43340 SAMTools SNP 130966 130966 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C27%2C54%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 131357 131357 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 131660 131660 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C175%2C28%2C114%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.028%2C3.5e-271%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43340 SAMTools SNP 131868 131868 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0:45 scaffold43340 SAMTools SNP 132107 132107 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C34%2C0%2C16%3BMQ%3D50%3BFQ%3D38%3BPV4%3D6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43340 SAMTools SNP 132138 132138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C49%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43340 SAMTools SNP 132783 132783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43340 SAMTools SNP 132861 132861 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C57%2C0:99 scaffold43340 SAMTools SNP 133151 133151 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold43340 SAMTools SNP 143645 143645 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43340 SAMTools SNP 146200 146200 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 155893 155893 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43340 SAMTools SNP 157557 157557 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C20%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1.8e-07%2C1%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold43340 SAMTools SNP 159290 159290 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C32%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1e-10%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C249:99 scaffold43340 SAMTools SNP 159316 159316 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C29%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C3.4e-06%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C248:99 scaffold43340 SAMTools SNP 159744 159744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 161681 161681 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43340 SAMTools SNP 161682 161682 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43340 SAMTools SNP 165386 165386 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C3.5e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C198:62 scaffold43340 SAMTools SNP 169722 169722 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C23%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.022%2C1%2C1%2C5.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold43340 SAMTools SNP 169773 169773 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 171524 171524 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172382 172382 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C16%2C8%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172442 172442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C12%2C11%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.77%2C0.23%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172448 172448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D46%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43340 SAMTools SNP 172454 172454 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C14%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.34%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172810 172810 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C3%2C107%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C4.7e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172819 172819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C10%2C81%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 172954 172954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C64%3BMQ%3D50%3BFQ%3D-216%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C189%2C0:99 scaffold43340 SAMTools SNP 173320 173320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 173446 173446 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C15%2C29%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.021%2C1%2C1%2C3.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold43340 SAMTools SNP 177054 177054 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43340 SAMTools SNP 177394 177394 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 177406 177406 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43340 SAMTools SNP 177409 177409 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C5%2C24%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43340 SAMTools SNP 178051 178051 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C87%2C13%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.034%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 178075 178075 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C72%2C13%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 178771 178771 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C12%2C48%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 181902 181902 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C156%2C27%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.0045%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43340 SAMTools SNP 185439 185439 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43340 SAMTools SNP 185768 185768 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43340 SAMTools SNP 186061 186061 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C254:99 scaffold43340 SAMTools SNP 186070 186070 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold43340 SAMTools SNP 227224 227224 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43340 SAMTools SNP 227289 227289 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43340 SAMTools SNP 227304 227304 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C126:40 scaffold43340 SAMTools SNP 229434 229434 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43340 SAMTools SNP 229442 229442 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43340 SAMTools SNP 231530 231530 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43340 SAMTools SNP 231569 231569 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43340 SAMTools SNP 231575 231575 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43340 SAMTools SNP 232010 232010 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43340 SAMTools SNP 232393 232393 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43340 SAMTools SNP 232455 232455 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.031%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C211:73 scaffold43340 SAMTools SNP 232494 232494 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C158:99 scaffold43340 SAMTools SNP 232499 232499 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43340 SAMTools SNP 233130 233130 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43340 SAMTools SNP 235280 235280 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43340 SAMTools SNP 235308 235308 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.25%2C0.037%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C177:41 scaffold43340 SAMTools SNP 235951 235951 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C180:99 scaffold43340 SAMTools SNP 235960 235960 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold43344 SAMTools SNP 1665 1665 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 2468 2468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D625%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C589%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43344 SAMTools SNP 2485 2485 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C303%2C7%2C232%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 3336 3336 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C4.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C245:58 scaffold43344 SAMTools SNP 16016 16016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 20636 20636 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 22389 22389 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43344 SAMTools SNP 23354 23354 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43344 SAMTools SNP 27007 27007 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43344 SAMTools SNP 28407 28407 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43344 SAMTools SNP 28496 28496 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43344 SAMTools SNP 31623 31623 58.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold43344 SAMTools SNP 41193 41193 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold43344 SAMTools SNP 45592 45592 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 59931 59931 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 60288 60288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 60324 60324 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.013%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43344 SAMTools SNP 60331 60331 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43344 SAMTools SNP 62736 62736 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold43344 SAMTools SNP 68882 68882 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43344 SAMTools SNP 69087 69087 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold43344 SAMTools SNP 69111 69111 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C29:32 scaffold43344 SAMTools SNP 70650 70650 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43344 SAMTools SNP 74900 74900 14.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43344 SAMTools SNP 77780 77780 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 77791 77791 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43344 SAMTools SNP 77812 77812 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43344 SAMTools SNP 79527 79527 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43344 SAMTools SNP 81022 81022 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 82461 82461 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C30%2C0:54 scaffold43344 SAMTools SNP 82968 82968 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43344 SAMTools SNP 83311 83311 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C34%2C2%2C12%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.034%2C0.36%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold43344 SAMTools SNP 83328 83328 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C24%2C1%2C7%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43344 SAMTools SNP 83365 83365 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43344 SAMTools SNP 83373 83373 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43344 SAMTools SNP 85884 85884 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.26%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold43344 SAMTools SNP 86902 86902 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43344 SAMTools SNP 86974 86974 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C5%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C223%2C0:99 scaffold43344 SAMTools SNP 87016 87016 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C25%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0001%2C7.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43344 SAMTools SNP 87091 87091 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C78%2C30%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-07%2C0.16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 87361 87361 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C45%2C20%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 87876 87876 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C5%2C26%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.019%2C9.5e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43344 SAMTools SNP 87990 87990 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43344 SAMTools SNP 88335 88335 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C67%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-05%2C0.041%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 90441 90441 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43344 SAMTools SNP 94326 94326 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C99:99 scaffold43344 SAMTools SNP 100409 100409 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 102463 102463 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43344 SAMTools SNP 102525 102525 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43344 SAMTools SNP 102530 102530 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 102702 102702 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C21%2C0:39 scaffold43344 SAMTools SNP 102730 102730 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43344 SAMTools SNP 102787 102787 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold43344 SAMTools SNP 107113 107113 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43344 SAMTools SNP 107494 107494 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43344 SAMTools SNP 107666 107666 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43344 SAMTools SNP 107729 107729 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold43344 SAMTools SNP 109762 109762 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43344 SAMTools SNP 110172 110172 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43344 SAMTools SNP 110199 110199 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 110207 110207 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 110797 110797 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 111326 111326 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 111980 111980 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 112863 112863 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 112900 112900 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43344 SAMTools SNP 118399 118399 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C73:76 scaffold43344 SAMTools SNP 118535 118535 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43344 SAMTools SNP 125016 125016 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C243:99 scaffold43344 SAMTools SNP 125773 125773 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C32%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43344 SAMTools SNP 128009 128009 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1.2e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 128384 128384 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold43344 SAMTools SNP 128405 128405 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43344 SAMTools SNP 128626 128626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43344 SAMTools SNP 128635 128635 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43344 SAMTools SNP 129075 129075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 129469 129469 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C48%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold43344 SAMTools SNP 129474 129474 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C1%2C10%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43344 SAMTools SNP 129503 129503 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold43344 SAMTools SNP 129550 129550 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D3.43%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C28:31 scaffold43344 SAMTools SNP 129575 129575 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43344 SAMTools SNP 129787 129787 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 129861 129861 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.044%2C1.4e-10%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43344 SAMTools SNP 130088 130088 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 130118 130118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 130333 130333 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43344 SAMTools SNP 130354 130354 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 130941 130941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43344 SAMTools SNP 130961 130961 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C10%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43344 SAMTools SNP 130982 130982 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold43344 SAMTools SNP 131033 131033 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold43344 SAMTools SNP 131283 131283 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43344 SAMTools SNP 131305 131305 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C30%2C0:57 scaffold43344 SAMTools SNP 131352 131352 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 131392 131392 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43344 SAMTools SNP 131765 131765 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43344 SAMTools SNP 131810 131810 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.54%2C0.45%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold43344 SAMTools SNP 132149 132149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 132200 132200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43344 SAMTools SNP 132606 132606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C46%2C2%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 132636 132636 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43344 SAMTools SNP 132642 132642 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43344 SAMTools SNP 132911 132911 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43344 SAMTools SNP 133833 133833 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43344 SAMTools SNP 133854 133854 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43344 SAMTools SNP 133857 133857 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43344 SAMTools SNP 135132 135132 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43344 SAMTools SNP 135369 135369 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43344 SAMTools SNP 135380 135380 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43344 SAMTools SNP 136051 136051 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold43344 SAMTools SNP 136063 136063 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43344 SAMTools SNP 137308 137308 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43344 SAMTools SNP 137312 137312 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43344 SAMTools SNP 137492 137492 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43344 SAMTools SNP 137736 137736 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C7%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43344 SAMTools SNP 137842 137842 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C242:99 scaffold43344 SAMTools SNP 137985 137985 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43344 SAMTools SNP 138220 138220 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 138291 138291 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 138559 138559 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 138971 138971 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 139002 139002 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 139222 139222 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43344 SAMTools SNP 140534 140534 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43344 SAMTools SNP 140989 140989 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43344 SAMTools SNP 143430 143430 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C40:42 scaffold43344 SAMTools SNP 143683 143683 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43344 SAMTools SNP 143732 143732 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.017%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold43344 SAMTools SNP 144149 144149 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C247:99 scaffold43344 SAMTools SNP 144701 144701 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C10%2C34%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.15%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43344 SAMTools SNP 144779 144779 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43344 SAMTools SNP 144821 144821 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold43344 SAMTools SNP 144857 144857 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold43344 SAMTools SNP 145351 145351 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.37%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43344 SAMTools SNP 145390 145390 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0001%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C88:52 scaffold43344 SAMTools SNP 145742 145742 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43344 SAMTools SNP 145782 145782 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 146128 146128 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43344 SAMTools SNP 147418 147418 46.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C3.4e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C14:17 scaffold43344 SAMTools SNP 147466 147466 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C221:57 scaffold43344 SAMTools SNP 147875 147875 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 150332 150332 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 150345 150345 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 150367 150367 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 151519 151519 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43344 SAMTools SNP 151563 151563 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43344 SAMTools SNP 151578 151578 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 153250 153250 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 153269 153269 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 153482 153482 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43344 SAMTools SNP 153503 153503 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43344 SAMTools SNP 153702 153702 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 154075 154075 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 157575 157575 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43344 SAMTools SNP 157601 157601 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 157662 157662 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43344 SAMTools SNP 157942 157942 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43344 SAMTools SNP 157986 157986 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43344 SAMTools SNP 157998 157998 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43344 SAMTools SNP 160238 160238 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 160265 160265 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43344 SAMTools SNP 169080 169080 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold43344 SAMTools SNP 169279 169279 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C81%2C0:99 scaffold43344 SAMTools SNP 169330 169330 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.045%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 169353 169353 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.078%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 169375 169375 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 170764 170764 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C34%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 170851 170851 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold43344 SAMTools SNP 170875 170875 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43344 SAMTools SNP 170971 170971 15.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold43344 SAMTools SNP 172500 172500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C36%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43344 SAMTools SNP 173803 173803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C43%3BMQ%3D41%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold43344 SAMTools SNP 174370 174370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C33%3BMQ%3D48%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43344 SAMTools SNP 174391 174391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C30%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43344 SAMTools SNP 174614 174614 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.35%2C0.082%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold43344 SAMTools SNP 174653 174653 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43344 SAMTools SNP 174664 174664 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.51%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold43344 SAMTools SNP 174910 174910 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 174949 174949 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.46%2C0.084%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C205:53 scaffold43344 SAMTools SNP 175220 175220 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold43344 SAMTools SNP 175223 175223 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold43344 SAMTools SNP 175621 175621 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold43344 SAMTools SNP 175959 175959 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43344 SAMTools SNP 175962 175962 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C197:99 scaffold43344 SAMTools SNP 176430 176430 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.24%2C0.0099%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C241:99 scaffold43344 SAMTools SNP 176439 176439 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43344 SAMTools SNP 176469 176469 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.13%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C155:69 scaffold43344 SAMTools SNP 176796 176796 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 177376 177376 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 177615 177615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 177648 177648 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 178011 178011 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43344 SAMTools SNP 178741 178741 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43344 SAMTools SNP 178753 178753 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43344 SAMTools SNP 200210 200210 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 205859 205859 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43344 SAMTools SNP 205878 205878 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43344 SAMTools SNP 206849 206849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43344 SAMTools SNP 207073 207073 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold43344 SAMTools SNP 207120 207120 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43344 SAMTools SNP 208871 208871 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 209259 209259 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold43344 SAMTools SNP 224130 224130 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43344 SAMTools SNP 230307 230307 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43344 SAMTools SNP 242351 242351 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43344 SAMTools SNP 242624 242624 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43344 SAMTools SNP 242664 242664 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43344 SAMTools SNP 242695 242695 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43358 SAMTools SNP 2195 2195 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 4124 4124 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C32%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43358 SAMTools SNP 4814 4814 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C32%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 6206 6206 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C13%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold43358 SAMTools SNP 12322 12322 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold43358 SAMTools SNP 12364 12364 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43358 SAMTools SNP 12777 12777 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43358 SAMTools SNP 12931 12931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C3%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43358 SAMTools SNP 13242 13242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C16%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43358 SAMTools SNP 13260 13260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43358 SAMTools SNP 13313 13313 51.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold43358 SAMTools SNP 15131 15131 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C83%2C8%2C11%3BMQ%3D49%3BFQ%3D73%3BPV4%3D0.61%2C1%2C0.00067%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43358 SAMTools SNP 15215 15215 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C44%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43358 SAMTools SNP 15224 15224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C40%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 15560 15560 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C12%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold43358 SAMTools SNP 15574 15574 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C10%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold43358 SAMTools SNP 15803 15803 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43358 SAMTools SNP 15870 15870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43358 SAMTools SNP 15890 15890 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43358 SAMTools SNP 16476 16476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43358 SAMTools SNP 16540 16540 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43358 SAMTools SNP 16674 16674 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43358 SAMTools SNP 16888 16888 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43358 SAMTools SNP 16942 16942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43358 SAMTools SNP 16966 16966 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43358 SAMTools SNP 17149 17149 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43358 SAMTools SNP 17184 17184 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43358 SAMTools SNP 17224 17224 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43358 SAMTools SNP 18971 18971 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43358 SAMTools SNP 18980 18980 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43358 SAMTools SNP 19795 19795 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43358 SAMTools SNP 21036 21036 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C220:36 scaffold43358 SAMTools SNP 21051 21051 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.22%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C239:99 scaffold43358 SAMTools SNP 21948 21948 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C19%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C157:99 scaffold43358 SAMTools SNP 21958 21958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43358 SAMTools SNP 23463 23463 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43358 SAMTools SNP 23488 23488 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43358 SAMTools SNP 24071 24071 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold43358 SAMTools SNP 25896 25896 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C22%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.066%2C1.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold43358 SAMTools SNP 25935 25935 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold43358 SAMTools SNP 25947 25947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.00086%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 25962 25962 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-06%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 25992 25992 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C10%2C11%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold43358 SAMTools SNP 27495 27495 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43358 SAMTools SNP 28033 28033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 28093 28093 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C177:99 scaffold43358 SAMTools SNP 28114 28114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 28326 28326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 28561 28561 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C45%2C23%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1.4e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 46661 46661 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43358 SAMTools SNP 47164 47164 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43358 SAMTools SNP 51369 51369 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 51385 51385 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 52058 52058 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C39%2C0:75 scaffold43358 SAMTools SNP 52507 52507 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C24%2C0:45 scaffold43358 SAMTools SNP 52561 52561 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold43358 SAMTools SNP 52741 52741 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C48%2C0:93 scaffold43358 SAMTools SNP 57732 57732 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C4.7e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C172:99 scaffold43358 SAMTools SNP 57771 57771 85 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold43358 SAMTools SNP 57805 57805 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.29%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold43358 SAMTools SNP 68615 68615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43358 SAMTools SNP 68620 68620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 73315 73315 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold43358 SAMTools SNP 73339 73339 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43358 SAMTools SNP 76564 76564 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D779%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C320%2C27%2C403%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1e-292%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 77949 77949 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C238%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43358 SAMTools SNP 78442 78442 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.19%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C32:35 scaffold43358 SAMTools SNP 78687 78687 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43358 SAMTools SNP 81849 81849 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43358 SAMTools SNP 84502 84502 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.15%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43358 SAMTools SNP 84559 84559 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold43358 SAMTools SNP 84571 84571 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.38%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43358 SAMTools SNP 85100 85100 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C4%2C37%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 85109 85109 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C14%2C46%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 85798 85798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43358 SAMTools SNP 85837 85837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C10%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold43358 SAMTools SNP 85858 85858 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C18%2C22%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-05%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 86208 86208 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C35%2C54%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C0.0053%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 86226 86226 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C31%2C18%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.00093%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 86238 86238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C4%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 87403 87403 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C20%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.28%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 104994 104994 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 111295 111295 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43358 SAMTools SNP 112384 112384 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold43358 SAMTools SNP 112407 112407 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43358 SAMTools SNP 116289 116289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 116310 116310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 124571 124571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold43358 SAMTools SNP 124676 124676 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C4.1e-10%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43358 SAMTools SNP 124739 124739 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C21%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C2.9e-48%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43358 SAMTools SNP 125712 125712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 140787 140787 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43358 SAMTools SNP 142291 142291 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43358 SAMTools SNP 142292 142292 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43358 SAMTools SNP 147012 147012 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold43358 SAMTools SNP 147075 147075 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.028%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold43358 SAMTools SNP 147173 147173 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43358 SAMTools SNP 149981 149981 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43358 SAMTools SNP 149982 149982 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43358 SAMTools SNP 151569 151569 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43358 SAMTools SNP 151572 151572 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C128:40 scaffold43358 SAMTools SNP 157202 157202 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C0%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43358 SAMTools SNP 157368 157368 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C3%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43358 SAMTools SNP 160760 160760 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.11%2C4.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43358 SAMTools SNP 160956 160956 32.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold43358 SAMTools SNP 163568 163568 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold43358 SAMTools SNP 165679 165679 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43358 SAMTools SNP 165695 165695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43358 SAMTools SNP 170335 170335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43358 SAMTools SNP 170554 170554 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C41%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43358 SAMTools SNP 170893 170893 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43358 SAMTools SNP 171103 171103 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.084%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 172309 172309 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C15%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.11%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43358 SAMTools SNP 172327 172327 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C49%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 172348 172348 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C19%2C17%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 173001 173001 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43358 SAMTools SNP 173049 173049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43358 SAMTools SNP 173436 173436 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C37:40 scaffold43358 SAMTools SNP 173698 173698 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43358 SAMTools SNP 173740 173740 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43358 SAMTools SNP 173773 173773 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold43358 SAMTools SNP 174312 174312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43358 SAMTools SNP 174821 174821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43358 SAMTools SNP 175182 175182 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C8%2C62%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.48%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 175942 175942 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C14%2C41%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 176610 176610 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C27%2C0:51 scaffold43358 SAMTools SNP 176658 176658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43358 SAMTools SNP 178526 178526 36.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold43358 SAMTools SNP 180285 180285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C4%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 180300 180300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C3%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 181786 181786 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold43358 SAMTools SNP 182550 182550 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43358 SAMTools SNP 182842 182842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43358 SAMTools SNP 182892 182892 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43358 SAMTools SNP 184077 184077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43358 SAMTools SNP 184462 184462 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43358 SAMTools SNP 184465 184465 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43358 SAMTools SNP 184498 184498 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C127:36 scaffold43358 SAMTools SNP 184618 184618 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43358 SAMTools SNP 184630 184630 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43358 SAMTools SNP 185663 185663 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C72%2C0:99 scaffold43358 SAMTools SNP 185753 185753 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43358 SAMTools SNP 185777 185777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43358 SAMTools SNP 186047 186047 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43358 SAMTools SNP 186152 186152 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C7.6e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C107:99 scaffold43358 SAMTools SNP 186233 186233 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43358 SAMTools SNP 186257 186257 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold43358 SAMTools SNP 187155 187155 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43358 SAMTools SNP 187384 187384 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold43358 SAMTools SNP 187427 187427 18.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43358 SAMTools SNP 187837 187837 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43358 SAMTools SNP 188128 188128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43358 SAMTools SNP 188221 188221 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C93:96 scaffold43358 SAMTools SNP 188500 188500 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold43358 SAMTools SNP 188650 188650 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43358 SAMTools SNP 188668 188668 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43358 SAMTools SNP 188919 188919 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 189087 189087 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.19%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 189091 189091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 189185 189185 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1.4e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 189558 189558 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold43358 SAMTools SNP 189567 189567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43358 SAMTools SNP 189690 189690 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43358 SAMTools SNP 190307 190307 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.00044%2C2.1e-09%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43358 SAMTools SNP 191042 191042 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43358 SAMTools SNP 191045 191045 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43358 SAMTools SNP 192662 192662 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43358 SAMTools SNP 192663 192663 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43358 SAMTools SNP 192711 192711 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C221:99 scaffold43358 SAMTools SNP 194262 194262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 194295 194295 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 194313 194313 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 195059 195059 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 196347 196347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43358 SAMTools SNP 198918 198918 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C195:31 scaffold43358 SAMTools SNP 206401 206401 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43358 SAMTools SNP 206640 206640 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C45%2C0:87 scaffold43358 SAMTools SNP 209497 209497 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43358 SAMTools SNP 209612 209612 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43358 SAMTools SNP 210257 210257 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C0.22%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C142:99 scaffold43358 SAMTools SNP 210849 210849 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 210879 210879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 211128 211128 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43358 SAMTools SNP 211590 211590 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 212607 212607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43358 SAMTools SNP 212630 212630 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43358 SAMTools SNP 212654 212654 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43358 SAMTools SNP 212666 212666 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43358 SAMTools SNP 212922 212922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C3%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43358 SAMTools SNP 213054 213054 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C18%2C10%3BMQ%3D50%3BFQ%3D216%3BPV4%3D5.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43358 SAMTools SNP 213390 213390 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold43358 SAMTools SNP 213399 213399 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43358 SAMTools SNP 213634 213634 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43358 SAMTools SNP 213642 213642 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43358 SAMTools SNP 215317 215317 9.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold43358 SAMTools SNP 215806 215806 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C102:30 scaffold43358 SAMTools SNP 221953 221953 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C0:6 scaffold43358 SAMTools SNP 244886 244886 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C63%2C0:86 scaffold43358 SAMTools SNP 244955 244955 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.5%2C1.3e-07%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43364 SAMTools SNP 408 408 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43364 SAMTools SNP 456 456 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43364 SAMTools SNP 2543 2543 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold43364 SAMTools SNP 4108 4108 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43364 SAMTools SNP 20121 20121 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43364 SAMTools SNP 22771 22771 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43364 SAMTools SNP 23865 23865 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43364 SAMTools SNP 41217 41217 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold43364 SAMTools SNP 44476 44476 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43364 SAMTools SNP 65748 65748 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0044%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold43364 SAMTools SNP 70183 70183 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43364 SAMTools SNP 151340 151340 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43364 SAMTools SNP 162347 162347 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43364 SAMTools SNP 163167 163167 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43364 SAMTools SNP 163195 163195 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43364 SAMTools SNP 166593 166593 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43364 SAMTools SNP 166613 166613 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43364 SAMTools SNP 167001 167001 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 167047 167047 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43364 SAMTools SNP 169821 169821 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43364 SAMTools SNP 171125 171125 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold43364 SAMTools SNP 171588 171588 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold43364 SAMTools SNP 171607 171607 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold43364 SAMTools SNP 173052 173052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43364 SAMTools SNP 175545 175545 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43364 SAMTools SNP 175560 175560 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C220:99 scaffold43364 SAMTools SNP 175647 175647 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43364 SAMTools SNP 179809 179809 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C2%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.24%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold43364 SAMTools SNP 183889 183889 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43364 SAMTools SNP 185017 185017 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C0.27%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43364 SAMTools SNP 197138 197138 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.44%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C2:5 scaffold43364 SAMTools SNP 197643 197643 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43364 SAMTools SNP 200019 200019 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43364 SAMTools SNP 200045 200045 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43364 SAMTools SNP 202410 202410 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.062%2C1%2C4.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold43364 SAMTools SNP 202842 202842 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C205:99 scaffold43364 SAMTools SNP 202848 202848 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C214:99 scaffold43364 SAMTools SNP 204859 204859 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C12%2C37%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 204913 204913 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C29%2C20%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.84%2C7e-09%2C0.18%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 204952 204952 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C7%2C40%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C1.3e-10%2C0.079%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 205615 205615 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C3%3BMQ%3D48%3BFQ%3D11.3%3BPV4%3D0.54%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43364 SAMTools SNP 205666 205666 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 205678 205678 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.085%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C250:99 scaffold43364 SAMTools SNP 206504 206504 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43364 SAMTools SNP 206508 206508 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43364 SAMTools SNP 206557 206557 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D44%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold43364 SAMTools SNP 207449 207449 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C3%2C13%3BMQ%3D47%3BFQ%3D182%3BPV4%3D0.083%2C0.07%2C0.0085%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43364 SAMTools SNP 215334 215334 10.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C1%2C0:3 scaffold43364 SAMTools SNP 227426 227426 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C255%2C0:99 scaffold43364 SAMTools SNP 227453 227453 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C57%2C7%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C5.8e-32%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43364 SAMTools SNP 235448 235448 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C20%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C238%2C0:99 scaffold43364 SAMTools SNP 235493 235493 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C255%2C0:99 scaffold43364 SAMTools SNP 238809 238809 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43364 SAMTools SNP 241651 241651 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2647%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D982%2C247%2C1185%2C233%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 3762 3762 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 3879 3879 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 6465 6465 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 9672 9672 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43366 SAMTools SNP 9903 9903 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43366 SAMTools SNP 9973 9973 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43366 SAMTools SNP 10521 10521 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43366 SAMTools SNP 11070 11070 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43366 SAMTools SNP 11343 11343 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43366 SAMTools SNP 11400 11400 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43366 SAMTools SNP 11803 11803 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43366 SAMTools SNP 12591 12591 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43366 SAMTools SNP 12618 12618 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold43366 SAMTools SNP 14741 14741 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C2%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.35%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43366 SAMTools SNP 14742 14742 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C2%2C6%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.44%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43366 SAMTools SNP 14873 14873 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.14%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold43366 SAMTools SNP 14879 14879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.21%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold43366 SAMTools SNP 15126 15126 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold43366 SAMTools SNP 15321 15321 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold43366 SAMTools SNP 15429 15429 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold43366 SAMTools SNP 25007 25007 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43366 SAMTools SNP 29320 29320 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 33075 33075 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43366 SAMTools SNP 34163 34163 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43366 SAMTools SNP 34560 34560 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43366 SAMTools SNP 35359 35359 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 35750 35750 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 35939 35939 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 35944 35944 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43366 SAMTools SNP 36107 36107 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C16%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D6.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43366 SAMTools SNP 36409 36409 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C51%2C0:99 scaffold43366 SAMTools SNP 37869 37869 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C5%2C7%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C1.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43366 SAMTools SNP 37932 37932 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C10%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0036%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43366 SAMTools SNP 41162 41162 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C11%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.015%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43366 SAMTools SNP 43122 43122 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43366 SAMTools SNP 43176 43176 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43366 SAMTools SNP 43783 43783 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C24%2C0:45 scaffold43366 SAMTools SNP 44258 44258 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43366 SAMTools SNP 44282 44282 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43366 SAMTools SNP 44372 44372 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43366 SAMTools SNP 44961 44961 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.36%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43366 SAMTools SNP 44979 44979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43366 SAMTools SNP 50155 50155 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 55746 55746 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 55752 55752 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 82672 82672 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43366 SAMTools SNP 85488 85488 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43366 SAMTools SNP 87288 87288 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43366 SAMTools SNP 87314 87314 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.089%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C138:39 scaffold43366 SAMTools SNP 87724 87724 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold43366 SAMTools SNP 87988 87988 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43366 SAMTools SNP 95655 95655 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43366 SAMTools SNP 96214 96214 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43366 SAMTools SNP 124825 124825 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 124849 124849 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 137174 137174 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 146158 146158 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 153164 153164 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43366 SAMTools SNP 154488 154488 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 155826 155826 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 156370 156370 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43366 SAMTools SNP 159387 159387 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold43366 SAMTools SNP 160564 160564 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43366 SAMTools SNP 167643 167643 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43366 SAMTools SNP 177260 177260 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C64%2C0%2C47%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.041%2C1.3e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43366 SAMTools SNP 178205 178205 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C77%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.04%2C1%2C3.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold43366 SAMTools SNP 179879 179879 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C14%2C28%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.0038%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 180656 180656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C24%2C28%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.27%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 182239 182239 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C36%2C85%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.48%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 182503 182503 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C37%2C14%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.11%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 184705 184705 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C88%2C27%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-05%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 188509 188509 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43366 SAMTools SNP 188516 188516 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.068%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43366 SAMTools SNP 191777 191777 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43366 SAMTools SNP 192814 192814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43366 SAMTools SNP 192820 192820 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-07%2C0.00017%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 192873 192873 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C32%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.0046%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 193061 193061 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 193194 193194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43366 SAMTools SNP 193214 193214 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C21%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold43366 SAMTools SNP 193423 193423 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.095%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C246:99 scaffold43366 SAMTools SNP 194969 194969 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C21%2C49%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D4.3e-05%2C9.7e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43366 SAMTools SNP 195606 195606 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43366 SAMTools SNP 195637 195637 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43366 SAMTools SNP 197398 197398 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43366 SAMTools SNP 197410 197410 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43366 SAMTools SNP 197494 197494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43366 SAMTools SNP 197518 197518 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43366 SAMTools SNP 197742 197742 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43366 SAMTools SNP 199782 199782 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43366 SAMTools SNP 200380 200380 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C8%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.52%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 200611 200611 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 200970 200970 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.6%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43366 SAMTools SNP 201639 201639 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 201678 201678 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 202482 202482 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C5%2C82%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 202913 202913 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C7%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43366 SAMTools SNP 202919 202919 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold43366 SAMTools SNP 204251 204251 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.38%2C0.12%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43366 SAMTools SNP 204501 204501 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43366 SAMTools SNP 204512 204512 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43366 SAMTools SNP 206295 206295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43366 SAMTools SNP 206609 206609 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold43366 SAMTools SNP 206658 206658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43366 SAMTools SNP 211747 211747 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C4.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C188:99 scaffold43388 SAMTools SNP 68081 68081 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43388 SAMTools SNP 68809 68809 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold43388 SAMTools SNP 68889 68889 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold43388 SAMTools SNP 79290 79290 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold43388 SAMTools SNP 217901 217901 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.038%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold43388 SAMTools SNP 218865 218865 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43388 SAMTools SNP 219007 219007 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43388 SAMTools SNP 219030 219030 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43388 SAMTools SNP 219741 219741 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43388 SAMTools SNP 220628 220628 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43388 SAMTools SNP 220650 220650 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43388 SAMTools SNP 225344 225344 5.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C12%2C0:12 scaffold43396 SAMTools SNP 2071 2071 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 2137 2137 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D5.47%3BPV4%3D1%2C1.6e-13%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C150:30 scaffold43396 SAMTools SNP 2187 2187 41.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C1%2C25%2C0%3BMQ%3D42%3BFQ%3D-27%3BPV4%3D0.19%2C1.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C0:3 scaffold43396 SAMTools SNP 2225 2225 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D35%3BFQ%3D11.2%3BPV4%3D1%2C6.7e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C42:41 scaffold43396 SAMTools SNP 6420 6420 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C18%3BMQ%3D21%3BFQ%3D32%3BPV4%3D0.02%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C151:62 scaffold43396 SAMTools SNP 6432 6432 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D21%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C126%2C0:99 scaffold43396 SAMTools SNP 6895 6895 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C8%2C12%3BMQ%3D21%3BFQ%3D32%3BPV4%3D0.0089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C59:62 scaffold43396 SAMTools SNP 8918 8918 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 9010 9010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43396 SAMTools SNP 9014 9014 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43396 SAMTools SNP 9945 9945 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43396 SAMTools SNP 10503 10503 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43396 SAMTools SNP 10978 10978 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 16318 16318 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43396 SAMTools SNP 36988 36988 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C5%2C0%3BMQ%3D40%3BFQ%3D72%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43396 SAMTools SNP 37015 37015 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43396 SAMTools SNP 37042 37042 173 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C49%2C208%2C0%2C202:45 scaffold43396 SAMTools SNP 37075 37075 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold43396 SAMTools SNP 39043 39043 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold43396 SAMTools SNP 44081 44081 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 44105 44105 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 44419 44419 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43396 SAMTools SNP 44454 44454 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 44502 44502 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43396 SAMTools SNP 44505 44505 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C243:62 scaffold43396 SAMTools SNP 45291 45291 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.22%2C0.041%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C239:99 scaffold43396 SAMTools SNP 45303 45303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43396 SAMTools SNP 45344 45344 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C27:30 scaffold43396 SAMTools SNP 47086 47086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43396 SAMTools SNP 47101 47101 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold43396 SAMTools SNP 47117 47117 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43396 SAMTools SNP 54519 54519 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold43396 SAMTools SNP 54547 54547 6.79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43396 SAMTools SNP 54593 54593 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43396 SAMTools SNP 58048 58048 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 58073 58073 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43396 SAMTools SNP 65214 65214 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 67753 67753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C2%2C51%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D0.00036%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43396 SAMTools SNP 70447 70447 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D49%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43396 SAMTools SNP 70492 70492 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C1%3BMQ%3D48%3BFQ%3D68%3BPV4%3D0.52%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43396 SAMTools SNP 70835 70835 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.48%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43396 SAMTools SNP 70847 70847 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43396 SAMTools SNP 73506 73506 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.43%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C29:32 scaffold43396 SAMTools SNP 127057 127057 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C8%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 127153 127153 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C237:99 scaffold43396 SAMTools SNP 130777 130777 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43396 SAMTools SNP 130780 130780 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43396 SAMTools SNP 130847 130847 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43396 SAMTools SNP 130869 130869 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold43396 SAMTools SNP 130897 130897 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C16%2C20%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1.2e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43396 SAMTools SNP 131423 131423 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C50%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 131425 131425 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C50%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 131525 131525 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C4.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 132233 132233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C60%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold43396 SAMTools SNP 132272 132272 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C121%2C11%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-07%2C0.0014%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 133708 133708 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 133735 133735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43396 SAMTools SNP 134193 134193 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C40%2C41%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 134411 134411 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43396 SAMTools SNP 134796 134796 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C29%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43396 SAMTools SNP 134889 134889 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C23%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43396 SAMTools SNP 135118 135118 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.14%2C0.097%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43396 SAMTools SNP 135130 135130 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 135190 135190 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C20%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43396 SAMTools SNP 135196 135196 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C20%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43396 SAMTools SNP 135534 135534 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C12%2C21%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 135743 135743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C75%2C0%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 135897 135897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.17%2C0.16%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold43396 SAMTools SNP 135932 135932 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.19%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43396 SAMTools SNP 136148 136148 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold43396 SAMTools SNP 136181 136181 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43396 SAMTools SNP 136220 136220 76.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold43396 SAMTools SNP 136232 136232 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 136295 136295 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43396 SAMTools SNP 136450 136450 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43396 SAMTools SNP 136471 136471 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43396 SAMTools SNP 136543 136543 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1.8e-05%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43396 SAMTools SNP 136728 136728 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C38%2C1%2C12%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43396 SAMTools SNP 136770 136770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 136791 136791 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D6%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.35%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C31:34 scaffold43396 SAMTools SNP 137134 137134 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C103%2C59%2C24%3BMQ%3D50%3BFQ%3D174%3BPV4%3D3.7e-05%2C3.6e-46%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43396 SAMTools SNP 137200 137200 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C36%2C51%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 137621 137621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C119%2C6%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C2.8e-95%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 137735 137735 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C6.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C207:48 scaffold43396 SAMTools SNP 138079 138079 28.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold43396 SAMTools SNP 141695 141695 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C33%2C0:63 scaffold43396 SAMTools SNP 142216 142216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43396 SAMTools SNP 142393 142393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43396 SAMTools SNP 143375 143375 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43396 SAMTools SNP 143625 143625 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43396 SAMTools SNP 143629 143629 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 143794 143794 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43396 SAMTools SNP 144852 144852 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 144862 144862 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 145997 145997 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43396 SAMTools SNP 146262 146262 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43396 SAMTools SNP 146289 146289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 146349 146349 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 147206 147206 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43396 SAMTools SNP 147233 147233 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43396 SAMTools SNP 147619 147619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold43396 SAMTools SNP 147891 147891 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43396 SAMTools SNP 148587 148587 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43396 SAMTools SNP 148623 148623 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold43396 SAMTools SNP 148665 148665 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C71:74 scaffold43396 SAMTools SNP 148827 148827 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C24%2C0:45 scaffold43396 SAMTools SNP 148862 148862 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43396 SAMTools SNP 149642 149642 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C5%2C7%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.71%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43396 SAMTools SNP 149654 149654 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43396 SAMTools SNP 150143 150143 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43396 SAMTools SNP 151651 151651 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.11%2C0.016%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43396 SAMTools SNP 151687 151687 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43396 SAMTools SNP 151762 151762 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43396 SAMTools SNP 152529 152529 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 152969 152969 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43396 SAMTools SNP 154769 154769 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C32%2C21%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.19%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold43396 SAMTools SNP 155268 155268 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 155283 155283 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold43396 SAMTools SNP 155852 155852 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C93:96 scaffold43396 SAMTools SNP 155870 155870 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43396 SAMTools SNP 156178 156178 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43396 SAMTools SNP 156461 156461 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0096%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C242:99 scaffold43396 SAMTools SNP 156605 156605 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43396 SAMTools SNP 156617 156617 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold43396 SAMTools SNP 156635 156635 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold43396 SAMTools SNP 157413 157413 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43396 SAMTools SNP 157439 157439 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43396 SAMTools SNP 157523 157523 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43396 SAMTools SNP 157544 157544 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43396 SAMTools SNP 157998 157998 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43396 SAMTools SNP 158027 158027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43396 SAMTools SNP 159402 159402 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold43396 SAMTools SNP 159408 159408 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43396 SAMTools SNP 159483 159483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 159520 159520 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 160250 160250 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold43396 SAMTools SNP 161016 161016 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C27%2C0:51 scaffold43396 SAMTools SNP 161064 161064 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.39%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C20:23 scaffold43396 SAMTools SNP 161410 161410 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43396 SAMTools SNP 161449 161449 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43396 SAMTools SNP 161554 161554 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 162202 162202 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 163736 163736 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 163823 163823 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 163980 163980 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 165320 165320 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 165338 165338 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 166273 166273 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 166300 166300 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43396 SAMTools SNP 166352 166352 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43396 SAMTools SNP 166853 166853 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43396 SAMTools SNP 166877 166877 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43396 SAMTools SNP 167450 167450 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold43396 SAMTools SNP 167815 167815 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 168430 168430 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C5%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.68%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43396 SAMTools SNP 168478 168478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 168481 168481 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 168877 168877 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold43396 SAMTools SNP 168909 168909 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43396 SAMTools SNP 168910 168910 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43396 SAMTools SNP 168928 168928 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43396 SAMTools SNP 169490 169490 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43396 SAMTools SNP 171318 171318 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C26%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43396 SAMTools SNP 171333 171333 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C18%2C5%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.15%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43396 SAMTools SNP 171366 171366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C91%2C17%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 171660 171660 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C41%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold43396 SAMTools SNP 171681 171681 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C18%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 172135 172135 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C21%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 172521 172521 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 172990 172990 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.12%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 173500 173500 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 173520 173520 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 173983 173983 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 174136 174136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 174379 174379 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 174783 174783 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C21%2C0:39 scaffold43396 SAMTools SNP 174810 174810 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C46%3BMQ%3D50%3BFQ%3D-77%3BPV4%3D1%2C0.29%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C50%2C0:97 scaffold43396 SAMTools SNP 175088 175088 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43396 SAMTools SNP 175148 175148 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43396 SAMTools SNP 175628 175628 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 175697 175697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43396 SAMTools SNP 176136 176136 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.38%2C8.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43396 SAMTools SNP 176160 176160 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 177801 177801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C17%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43396 SAMTools SNP 179869 179869 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 180074 180074 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43396 SAMTools SNP 180493 180493 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 184379 184379 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold43396 SAMTools SNP 184434 184434 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43396 SAMTools SNP 216708 216708 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43396 SAMTools SNP 217152 217152 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 217167 217167 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 220210 220210 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 230988 230988 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold43396 SAMTools SNP 231391 231391 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43396 SAMTools SNP 231736 231736 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43396 SAMTools SNP 244005 244005 87.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold43396 SAMTools SNP 244136 244136 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C26:29 scaffold43396 SAMTools SNP 244140 244140 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold43396 SAMTools SNP 244158 244158 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold43396 SAMTools SNP 244329 244329 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 244344 244344 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C3%2C10%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.12%2C0.11%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43396 SAMTools SNP 244347 244347 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C1%2C10%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.021%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold43396 SAMTools SNP 244653 244653 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C1%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43396 SAMTools SNP 244721 244721 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C24%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold43396 SAMTools SNP 244885 244885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C9%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43396 SAMTools SNP 244927 244927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43396 SAMTools SNP 244930 244930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43396 SAMTools SNP 244945 244945 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C2%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43396 SAMTools SNP 245206 245206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C38%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 245258 245258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43396 SAMTools SNP 245271 245271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43396 SAMTools SNP 245440 245440 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C7%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43396 SAMTools SNP 245452 245452 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C12%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.67%2C0.36%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43396 SAMTools SNP 246053 246053 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C57%2C0:99 scaffold43396 SAMTools SNP 247437 247437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43396 SAMTools SNP 248106 248106 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43396 SAMTools SNP 248151 248151 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.054%2C0.2%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43396 SAMTools SNP 248466 248466 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C22%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-06%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43396 SAMTools SNP 248666 248666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C55%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43396 SAMTools SNP 249177 249177 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C241:28 scaffold43396 SAMTools SNP 249488 249488 20.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold43396 SAMTools SNP 249764 249764 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43396 SAMTools SNP 249766 249766 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43396 SAMTools SNP 251205 251205 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43396 SAMTools SNP 251292 251292 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.068%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43396 SAMTools SNP 251321 251321 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold43396 SAMTools SNP 251519 251519 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C19%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.032%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold43396 SAMTools SNP 251546 251546 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C18%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold43396 SAMTools SNP 251741 251741 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43396 SAMTools SNP 251768 251768 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43396 SAMTools SNP 251843 251843 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C234:99 scaffold43396 SAMTools SNP 252213 252213 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43396 SAMTools SNP 252222 252222 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C4%2C4%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.028%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43396 SAMTools SNP 252691 252691 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43396 SAMTools SNP 252714 252714 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold43406 SAMTools SNP 595 595 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 624 624 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 723 723 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold43406 SAMTools SNP 725 725 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43406 SAMTools SNP 1388 1388 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43406 SAMTools SNP 1436 1436 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold43406 SAMTools SNP 1439 1439 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold43406 SAMTools SNP 2572 2572 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold43406 SAMTools SNP 2608 2608 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43406 SAMTools SNP 2641 2641 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43406 SAMTools SNP 2665 2665 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C24%2C0:45 scaffold43406 SAMTools SNP 3860 3860 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43406 SAMTools SNP 3902 3902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 3984 3984 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0044%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43406 SAMTools SNP 4288 4288 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43406 SAMTools SNP 5565 5565 45.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold43406 SAMTools SNP 7094 7094 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C0.0036%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43406 SAMTools SNP 7101 7101 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold43406 SAMTools SNP 7136 7136 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.094%2C0.009%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43406 SAMTools SNP 7973 7973 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43406 SAMTools SNP 8013 8013 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43406 SAMTools SNP 8339 8339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43406 SAMTools SNP 9012 9012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43406 SAMTools SNP 9258 9258 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43406 SAMTools SNP 10307 10307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C36%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43406 SAMTools SNP 14163 14163 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43406 SAMTools SNP 14211 14211 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43406 SAMTools SNP 15469 15469 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C66:69 scaffold43406 SAMTools SNP 15488 15488 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43406 SAMTools SNP 22203 22203 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold43406 SAMTools SNP 22386 22386 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43406 SAMTools SNP 23523 23523 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43406 SAMTools SNP 23592 23592 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43406 SAMTools SNP 23595 23595 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43406 SAMTools SNP 24350 24350 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C149:99 scaffold43406 SAMTools SNP 24356 24356 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C246:99 scaffold43406 SAMTools SNP 24824 24824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C10%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold43406 SAMTools SNP 25550 25550 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43406 SAMTools SNP 25559 25559 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43406 SAMTools SNP 25574 25574 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43406 SAMTools SNP 25577 25577 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43406 SAMTools SNP 26507 26507 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.014%2C0.5%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold43406 SAMTools SNP 33508 33508 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43406 SAMTools SNP 33521 33521 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43406 SAMTools SNP 34118 34118 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43406 SAMTools SNP 54452 54452 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 81556 81556 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 81776 81776 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 109068 109068 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 109370 109370 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43406 SAMTools SNP 109834 109834 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43406 SAMTools SNP 148471 148471 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D11.8%3BPV4%3D1%2C0.17%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C48:41 scaffold43406 SAMTools SNP 160812 160812 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43406 SAMTools SNP 171528 171528 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43406 SAMTools SNP 171555 171555 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43406 SAMTools SNP 171582 171582 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43406 SAMTools SNP 171620 171620 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C164:36 scaffold43406 SAMTools SNP 177374 177374 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C35:38 scaffold43406 SAMTools SNP 177491 177491 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43406 SAMTools SNP 179091 179091 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43406 SAMTools SNP 179180 179180 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D22.6%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C50:53 scaffold43406 SAMTools SNP 179619 179619 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C201:43 scaffold43406 SAMTools SNP 180165 180165 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.4%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C242:99 scaffold43406 SAMTools SNP 180238 180238 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.061%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43406 SAMTools SNP 180249 180249 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43406 SAMTools SNP 180489 180489 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold43406 SAMTools SNP 181822 181822 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.25%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C76:76 scaffold43406 SAMTools SNP 183484 183484 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43406 SAMTools SNP 192235 192235 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 193303 193303 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 193314 193314 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 197357 197357 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43406 SAMTools SNP 201918 201918 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C120:31 scaffold43406 SAMTools SNP 202337 202337 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 202570 202570 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0079%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43406 SAMTools SNP 202693 202693 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold43406 SAMTools SNP 203225 203225 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 205951 205951 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0007%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43406 SAMTools SNP 205969 205969 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43406 SAMTools SNP 206370 206370 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43406 SAMTools SNP 206742 206742 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43406 SAMTools SNP 210624 210624 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43406 SAMTools SNP 214008 214008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D265%2C10%2C211%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43406 SAMTools SNP 214034 214034 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C29%2C101%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43406 SAMTools SNP 214055 214055 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D622%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C242%2C86%2C200%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43406 SAMTools SNP 220517 220517 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C29%2C65%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43406 SAMTools SNP 220866 220866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C13%2C96%3BMQ%3D50%3BFQ%3D-267%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C240%2C0:99 scaffold43406 SAMTools SNP 220881 220881 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C7%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D2.7e-07%2C1%2C1%2C4.9e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C225:99 scaffold43426 SAMTools SNP 2590 2590 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C3%2C34%3BMQ%3D47%3BFQ%3D223%3BPV4%3D0.71%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43426 SAMTools SNP 3437 3437 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C2%2C9%3BMQ%3D46%3BFQ%3D194%3BPV4%3D0.0041%2C0.39%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43426 SAMTools SNP 3692 3692 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C17%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.17%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 3707 3707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43426 SAMTools SNP 4390 4390 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43426 SAMTools SNP 4391 4391 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43426 SAMTools SNP 4894 4894 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.061%2C0.0031%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43426 SAMTools SNP 4899 4899 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.096%2C0.00052%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43426 SAMTools SNP 4918 4918 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43426 SAMTools SNP 5108 5108 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.18%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C162:99 scaffold43426 SAMTools SNP 6490 6490 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.5%2C1%2C0.025%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold43426 SAMTools SNP 7528 7528 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 7546 7546 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 7929 7929 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C54%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 7962 7962 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 8010 8010 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 9148 9148 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C13%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold43426 SAMTools SNP 9179 9179 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43426 SAMTools SNP 14927 14927 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43426 SAMTools SNP 15286 15286 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43426 SAMTools SNP 19845 19845 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 19877 19877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 20006 20006 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C3%2C7%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43426 SAMTools SNP 22402 22402 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43426 SAMTools SNP 23116 23116 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43426 SAMTools SNP 23456 23456 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 25407 25407 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43426 SAMTools SNP 25565 25565 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43426 SAMTools SNP 25616 25616 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.49%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43426 SAMTools SNP 26617 26617 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43426 SAMTools SNP 26921 26921 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.025%2C8.2e-06%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43426 SAMTools SNP 26955 26955 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43426 SAMTools SNP 27552 27552 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C29%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold43426 SAMTools SNP 27723 27723 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C62%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold43426 SAMTools SNP 33960 33960 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43426 SAMTools SNP 34265 34265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C7%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43426 SAMTools SNP 34274 34274 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43426 SAMTools SNP 34328 34328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C48%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 37659 37659 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold43426 SAMTools SNP 37887 37887 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C42%2C0:80 scaffold43426 SAMTools SNP 38114 38114 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43426 SAMTools SNP 38192 38192 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C114%2C0:99 scaffold43426 SAMTools SNP 38479 38479 44.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold43426 SAMTools SNP 38902 38902 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold43426 SAMTools SNP 38931 38931 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43426 SAMTools SNP 39493 39493 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.059%2C3.3e-20%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43426 SAMTools SNP 39751 39751 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 39755 39755 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C38:41 scaffold43426 SAMTools SNP 39772 39772 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0011%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43426 SAMTools SNP 41549 41549 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold43426 SAMTools SNP 41550 41550 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43426 SAMTools SNP 41552 41552 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43426 SAMTools SNP 41582 41582 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43426 SAMTools SNP 41616 41616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43426 SAMTools SNP 42461 42461 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43426 SAMTools SNP 42653 42653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 43267 43267 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C62%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 43292 43292 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C58%2C5%2C150%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold43426 SAMTools SNP 44508 44508 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 44532 44532 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C59%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C10:13 scaffold43426 SAMTools SNP 48381 48381 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 48417 48417 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C255%2C0:99 scaffold43426 SAMTools SNP 48531 48531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C34%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43426 SAMTools SNP 48546 48546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43426 SAMTools SNP 48603 48603 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C97%2C24%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 48899 48899 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C312%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 48975 48975 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43426 SAMTools SNP 48981 48981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43426 SAMTools SNP 51477 51477 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold43426 SAMTools SNP 51575 51575 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C16%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C220%2C0:99 scaffold43426 SAMTools SNP 52344 52344 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C84%2C0:99 scaffold43426 SAMTools SNP 58235 58235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D848%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C387%2C11%2C424%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 58480 58480 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 59055 59055 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C74%2C38%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 59155 59155 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C61%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 60845 60845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43426 SAMTools SNP 69059 69059 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43426 SAMTools SNP 69243 69243 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C107:34 scaffold43426 SAMTools SNP 71574 71574 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold43426 SAMTools SNP 86747 86747 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C114:34 scaffold43426 SAMTools SNP 128328 128328 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C74:59 scaffold43426 SAMTools SNP 128397 128397 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold43426 SAMTools SNP 169868 169868 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C129%2C0:99 scaffold43426 SAMTools SNP 169965 169965 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold43426 SAMTools SNP 170523 170523 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold43426 SAMTools SNP 170526 170526 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 170610 170610 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C10%2C5%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D3.3e-06%2C0.019%2C1%2C4.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43426 SAMTools SNP 174085 174085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C15%2C39%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.7e-09%2C1.4e-09%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 175586 175586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C140%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43426 SAMTools SNP 175619 175619 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C73%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold43426 SAMTools SNP 175869 175869 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43426 SAMTools SNP 175876 175876 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 176189 176189 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 178463 178463 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43426 SAMTools SNP 180278 180278 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold43426 SAMTools SNP 180302 180302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C18%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43426 SAMTools SNP 181164 181164 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.031%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43426 SAMTools SNP 183030 183030 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C29:32 scaffold43426 SAMTools SNP 183081 183081 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43426 SAMTools SNP 183652 183652 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43426 SAMTools SNP 183699 183699 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 184429 184429 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C80:61 scaffold43426 SAMTools SNP 184474 184474 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43426 SAMTools SNP 185489 185489 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold43426 SAMTools SNP 185639 185639 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold43426 SAMTools SNP 190366 190366 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43426 SAMTools SNP 190411 190411 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43426 SAMTools SNP 191403 191403 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold43426 SAMTools SNP 193503 193503 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 193506 193506 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 193659 193659 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43426 SAMTools SNP 194294 194294 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43426 SAMTools SNP 194362 194362 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C175:99 scaffold43426 SAMTools SNP 194549 194549 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43426 SAMTools SNP 195271 195271 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 195295 195295 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43426 SAMTools SNP 197476 197476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43426 SAMTools SNP 197522 197522 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.43%2C0.0073%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43426 SAMTools SNP 197529 197529 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43426 SAMTools SNP 197548 197548 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43426 SAMTools SNP 197575 197575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C26%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.54%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43426 SAMTools SNP 197836 197836 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold43426 SAMTools SNP 198248 198248 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold43426 SAMTools SNP 198344 198344 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43426 SAMTools SNP 198613 198613 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold43426 SAMTools SNP 198658 198658 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold43426 SAMTools SNP 201304 201304 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43426 SAMTools SNP 201308 201308 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43426 SAMTools SNP 202034 202034 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.00061%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43426 SAMTools SNP 203879 203879 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C214:99 scaffold43426 SAMTools SNP 205323 205323 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0096%2C5.8e-11%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43426 SAMTools SNP 205799 205799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C0.16%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold43426 SAMTools SNP 205800 205800 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43426 SAMTools SNP 205902 205902 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 206185 206185 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43426 SAMTools SNP 206951 206951 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 206954 206954 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 206981 206981 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 208071 208071 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43426 SAMTools SNP 209557 209557 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00064%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C54:57 scaffold43426 SAMTools SNP 209609 209609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43426 SAMTools SNP 209926 209926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold43426 SAMTools SNP 211119 211119 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 211851 211851 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold43426 SAMTools SNP 212191 212191 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D6.94%3BPV4%3D0.17%2C6.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C33:36 scaffold43426 SAMTools SNP 215884 215884 55.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold43426 SAMTools SNP 218711 218711 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold43426 SAMTools SNP 218740 218740 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43426 SAMTools SNP 222272 222272 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43426 SAMTools SNP 223061 223061 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D32.5%3BPV4%3D1%2C0.012%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C62:62 scaffold43426 SAMTools SNP 245529 245529 39.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold43426 SAMTools SNP 253888 253888 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold43426 SAMTools SNP 253899 253899 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold43426 SAMTools SNP 253918 253918 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43426 SAMTools SNP 254236 254236 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 255043 255043 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 255071 255071 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43426 SAMTools SNP 258742 258742 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43426 SAMTools SNP 259159 259159 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold43426 SAMTools SNP 259204 259204 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.1%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C3%2C0:6 scaffold43426 SAMTools SNP 259240 259240 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C1%2C7%3BMQ%3D40%3BFQ%3D-37%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C10%2C0:17 scaffold43426 SAMTools SNP 259628 259628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43426 SAMTools SNP 259788 259788 47.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C5%2C3%3BMQ%3D20%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C7%2C0:12 scaffold43426 SAMTools SNP 260458 260458 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D46%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43426 SAMTools SNP 260473 260473 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D46%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43426 SAMTools SNP 260705 260705 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43442 SAMTools SNP 7082 7082 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 9741 9741 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43442 SAMTools SNP 10045 10045 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43442 SAMTools SNP 10046 10046 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold43442 SAMTools SNP 10064 10064 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 10441 10441 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold43442 SAMTools SNP 17577 17577 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 17616 17616 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43442 SAMTools SNP 23196 23196 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43442 SAMTools SNP 26930 26930 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 27423 27423 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 28005 28005 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold43442 SAMTools SNP 28011 28011 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43442 SAMTools SNP 29502 29502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43442 SAMTools SNP 29547 29547 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43442 SAMTools SNP 29883 29883 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 52265 52265 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43442 SAMTools SNP 53931 53931 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0017%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43442 SAMTools SNP 55777 55777 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold43442 SAMTools SNP 55896 55896 45.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43442 SAMTools SNP 56303 56303 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.083%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C235:99 scaffold43442 SAMTools SNP 56436 56436 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43442 SAMTools SNP 57320 57320 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 57521 57521 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43442 SAMTools SNP 59307 59307 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43442 SAMTools SNP 60948 60948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.35%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43442 SAMTools SNP 60963 60963 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C230:99 scaffold43442 SAMTools SNP 63135 63135 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43442 SAMTools SNP 63148 63148 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43442 SAMTools SNP 70170 70170 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.14%2C0.13%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C136:89 scaffold43442 SAMTools SNP 93221 93221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43442 SAMTools SNP 93289 93289 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43442 SAMTools SNP 93579 93579 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43442 SAMTools SNP 93651 93651 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43442 SAMTools SNP 93831 93831 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold43442 SAMTools SNP 93864 93864 164 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C9%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.25%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43442 SAMTools SNP 93954 93954 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43442 SAMTools SNP 94732 94732 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43442 SAMTools SNP 94837 94837 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43442 SAMTools SNP 95268 95268 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43442 SAMTools SNP 95477 95477 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C284%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43442 SAMTools SNP 95510 95510 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C165%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43442 SAMTools SNP 98532 98532 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43442 SAMTools SNP 102636 102636 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C10%2C1%2C5%3BMQ%3D28%3BFQ%3D-33%3BPV4%3D0.37%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C6%2C0:10 scaffold43442 SAMTools SNP 102985 102985 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43442 SAMTools SNP 103001 103001 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43442 SAMTools SNP 104719 104719 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold43442 SAMTools SNP 105954 105954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43442 SAMTools SNP 105984 105984 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C221:99 scaffold43442 SAMTools SNP 106190 106190 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43442 SAMTools SNP 106429 106429 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold43442 SAMTools SNP 106432 106432 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold43442 SAMTools SNP 106445 106445 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.46%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43442 SAMTools SNP 106459 106459 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43442 SAMTools SNP 106969 106969 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43442 SAMTools SNP 107047 107047 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43442 SAMTools SNP 107204 107204 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43442 SAMTools SNP 107251 107251 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C144:99 scaffold43442 SAMTools SNP 107627 107627 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold43442 SAMTools SNP 107925 107925 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43442 SAMTools SNP 108071 108071 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43442 SAMTools SNP 108736 108736 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43442 SAMTools SNP 108794 108794 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43442 SAMTools SNP 109363 109363 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43442 SAMTools SNP 109647 109647 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43442 SAMTools SNP 109682 109682 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43442 SAMTools SNP 109702 109702 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C54:57 scaffold43442 SAMTools SNP 109804 109804 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43442 SAMTools SNP 109836 109836 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23:45 scaffold43442 SAMTools SNP 110604 110604 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43442 SAMTools SNP 111778 111778 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43442 SAMTools SNP 124160 124160 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43442 SAMTools SNP 124167 124167 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C42:45 scaffold43442 SAMTools SNP 126758 126758 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43442 SAMTools SNP 139829 139829 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold43442 SAMTools SNP 144210 144210 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.2%2C0.14%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold43442 SAMTools SNP 144284 144284 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold43442 SAMTools SNP 144696 144696 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43442 SAMTools SNP 164557 164557 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 164559 164559 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 168874 168874 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold43442 SAMTools SNP 173348 173348 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 173717 173717 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 176421 176421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 177000 177000 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C124:99 scaffold43442 SAMTools SNP 177046 177046 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43442 SAMTools SNP 177369 177369 122 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D47%3BFQ%3D105%3BPV4%3D1%2C0.03%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C132:99 scaffold43442 SAMTools SNP 178078 178078 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43442 SAMTools SNP 178111 178111 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43442 SAMTools SNP 178193 178193 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold43442 SAMTools SNP 179160 179160 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43442 SAMTools SNP 179267 179267 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43442 SAMTools SNP 179291 179291 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43442 SAMTools SNP 182547 182547 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43442 SAMTools SNP 187363 187363 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43442 SAMTools SNP 187408 187408 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C122:99 scaffold43442 SAMTools SNP 189761 189761 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43442 SAMTools SNP 191839 191839 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43442 SAMTools SNP 191995 191995 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold43442 SAMTools SNP 192087 192087 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold43442 SAMTools SNP 193628 193628 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43446 SAMTools SNP 36341 36341 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D33.9%3BPV4%3D0.13%2C7.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C63:64 scaffold43446 SAMTools SNP 36650 36650 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C39%2C0:75 scaffold43446 SAMTools SNP 37112 37112 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C26%2C5%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.44%2C8.2e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43446 SAMTools SNP 37233 37233 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C4%2C22%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.74%2C1.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold43446 SAMTools SNP 80487 80487 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43446 SAMTools SNP 88061 88061 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 91198 91198 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C80:57 scaffold43446 SAMTools SNP 109753 109753 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43446 SAMTools SNP 117387 117387 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold43446 SAMTools SNP 117808 117808 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C21%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold43446 SAMTools SNP 118848 118848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C21%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold43446 SAMTools SNP 125768 125768 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C45%2C0:87 scaffold43446 SAMTools SNP 125897 125897 34.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold43446 SAMTools SNP 125965 125965 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold43446 SAMTools SNP 126576 126576 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43446 SAMTools SNP 127529 127529 55.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold43446 SAMTools SNP 127765 127765 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 127788 127788 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C74:77 scaffold43446 SAMTools SNP 128518 128518 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43446 SAMTools SNP 129653 129653 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C93%2C0%2C60%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.046%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43446 SAMTools SNP 129654 129654 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C0%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.59%2C1%2C0.012%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43446 SAMTools SNP 129655 129655 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43446 SAMTools SNP 129695 129695 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43446 SAMTools SNP 129729 129729 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43446 SAMTools SNP 130207 130207 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold43446 SAMTools SNP 130345 130345 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 130346 130346 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 135135 135135 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43446 SAMTools SNP 135325 135325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43446 SAMTools SNP 135405 135405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43446 SAMTools SNP 135915 135915 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43446 SAMTools SNP 135932 135932 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold43446 SAMTools SNP 136077 136077 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold43446 SAMTools SNP 140009 140009 24.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold43446 SAMTools SNP 140498 140498 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43446 SAMTools SNP 143718 143718 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43446 SAMTools SNP 149885 149885 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 150012 150012 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D3.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C30:32 scaffold43446 SAMTools SNP 154166 154166 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold43446 SAMTools SNP 154358 154358 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold43446 SAMTools SNP 154425 154425 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43446 SAMTools SNP 154659 154659 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43446 SAMTools SNP 157299 157299 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43446 SAMTools SNP 157301 157301 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43446 SAMTools SNP 157346 157346 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.61%3BPV4%3D1%2C0.00031%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C35:38 scaffold43446 SAMTools SNP 157404 157404 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43446 SAMTools SNP 157440 157440 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43446 SAMTools SNP 158039 158039 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 158215 158215 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 158226 158226 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43446 SAMTools SNP 158233 158233 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43446 SAMTools SNP 158314 158314 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43446 SAMTools SNP 158430 158430 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 158862 158862 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43446 SAMTools SNP 158879 158879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 158890 158890 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 165769 165769 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C66:69 scaffold43446 SAMTools SNP 166639 166639 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold43446 SAMTools SNP 166956 166956 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold43446 SAMTools SNP 166983 166983 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43446 SAMTools SNP 167031 167031 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C70:73 scaffold43446 SAMTools SNP 167275 167275 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D45.5%3BPV4%3D0.25%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C76:75 scaffold43446 SAMTools SNP 167752 167752 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43446 SAMTools SNP 167859 167859 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43446 SAMTools SNP 168411 168411 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 177453 177453 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C24%2C0:45 scaffold43446 SAMTools SNP 177480 177480 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43446 SAMTools SNP 183127 183127 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43446 SAMTools SNP 183338 183338 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43446 SAMTools SNP 183933 183933 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43446 SAMTools SNP 184213 184213 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold43446 SAMTools SNP 184235 184235 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43446 SAMTools SNP 184370 184370 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43446 SAMTools SNP 184387 184387 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold43446 SAMTools SNP 185498 185498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 185532 185532 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 208116 208116 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C18%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C247:99 scaffold43446 SAMTools SNP 209757 209757 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C13%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.025%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold43446 SAMTools SNP 210516 210516 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43446 SAMTools SNP 214243 214243 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43446 SAMTools SNP 215435 215435 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43446 SAMTools SNP 215479 215479 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43446 SAMTools SNP 215507 215507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43446 SAMTools SNP 218647 218647 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43446 SAMTools SNP 218679 218679 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C66%2C0:99 scaffold43446 SAMTools SNP 218778 218778 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43446 SAMTools SNP 219235 219235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43446 SAMTools SNP 219256 219256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43446 SAMTools SNP 220347 220347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43446 SAMTools SNP 222065 222065 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43446 SAMTools SNP 222231 222231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43446 SAMTools SNP 225376 225376 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.052%2C1%2C5.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C23:26 scaffold43446 SAMTools SNP 225377 225377 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C0.039%2C1%2C6.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C26:29 scaffold43446 SAMTools SNP 225639 225639 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C106:37 scaffold43446 SAMTools SNP 227147 227147 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold43446 SAMTools SNP 228455 228455 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C57%2C0:99 scaffold43446 SAMTools SNP 228658 228658 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D540%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C33%2C256%2C19%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0046%2C8.6e-235%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43446 SAMTools SNP 232290 232290 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43446 SAMTools SNP 232764 232764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D571%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C311%2C164%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.46%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43446 SAMTools SNP 232776 232776 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D752%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D329%2C116%2C117%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-10%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43446 SAMTools SNP 232818 232818 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D786%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C235%2C249%2C187%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-14%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43446 SAMTools SNP 233281 233281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D444%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C107%2C125%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43446 SAMTools SNP 233456 233456 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C82%2C195%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43446 SAMTools SNP 234455 234455 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43446 SAMTools SNP 234908 234908 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C42%2C59%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43446 SAMTools SNP 239088 239088 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43446 SAMTools SNP 239102 239102 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43446 SAMTools SNP 239208 239208 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C51%2C0:99 scaffold43446 SAMTools SNP 239562 239562 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C12%2C30%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.11%2C5.8e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43446 SAMTools SNP 240146 240146 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43446 SAMTools SNP 240325 240325 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C189:99 scaffold43446 SAMTools SNP 241093 241093 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43452 SAMTools SNP 5567 5567 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C0%2C22%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1.1e-06%2C6.4e-14%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43452 SAMTools SNP 8580 8580 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C2%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.28%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43452 SAMTools SNP 33560 33560 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 47401 47401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C14%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C2.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 50772 50772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C36%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 52603 52603 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold43452 SAMTools SNP 52929 52929 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43452 SAMTools SNP 53760 53760 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C28%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 54950 54950 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C47%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C178%2C0:99 scaffold43452 SAMTools SNP 55177 55177 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C60%2C0:99 scaffold43452 SAMTools SNP 55691 55691 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.062%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C13%2C0:23 scaffold43452 SAMTools SNP 56303 56303 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43452 SAMTools SNP 58117 58117 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C16%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3e-13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C187:39 scaffold43452 SAMTools SNP 65372 65372 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C18%2C28%2C19%3BMQ%3D30%3BFQ%3D225%3BPV4%3D4.7e-05%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 67615 67615 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C26%2C266%2C20%3BMQ%3D41%3BFQ%3D142%3BPV4%3D4.6e-05%2C1.1e-22%2C4.6e-14%2C3.3e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43452 SAMTools SNP 67643 67643 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C30%2C0:57 scaffold43452 SAMTools SNP 67687 67687 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D588%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C415%2C40%2C91%3BMQ%3D36%3BFQ%3D203%3BPV4%3D1.3e-08%2C4.3e-132%2C1%2C1.4e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43452 SAMTools SNP 67708 67708 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C415%2C57%2C93%3BMQ%3D36%3BFQ%3D104%3BPV4%3D5.6e-15%2C2.5e-104%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43452 SAMTools SNP 67720 67720 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D601%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C92%2C40%2C398%3BMQ%3D37%3BFQ%3D133%3BPV4%3D1.1e-17%2C1.9e-197%2C7.1e-34%2C1.5e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43452 SAMTools SNP 68147 68147 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C63%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-19%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 71390 71390 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C7%3BMQ%3D18%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C160%2C0:99 scaffold43452 SAMTools SNP 73444 73444 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold43452 SAMTools SNP 73524 73524 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C5%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43452 SAMTools SNP 82933 82933 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C57%2C0:99 scaffold43452 SAMTools SNP 84340 84340 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C30:33 scaffold43452 SAMTools SNP 84454 84454 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C2%2C56%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C3.4e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43452 SAMTools SNP 84540 84540 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.017%2C3.3e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C165:86 scaffold43452 SAMTools SNP 84915 84915 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C177:99 scaffold43452 SAMTools SNP 84926 84926 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.1%2C5.1e-07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43452 SAMTools SNP 86063 86063 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C0.34%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43452 SAMTools SNP 86069 86069 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold43452 SAMTools SNP 86511 86511 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43452 SAMTools SNP 86907 86907 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C29%2C51%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 86953 86953 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C37%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 86992 86992 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C72%2C10%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 87013 87013 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43452 SAMTools SNP 87833 87833 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43452 SAMTools SNP 88607 88607 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 89557 89557 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 90700 90700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 90718 90718 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C25%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 91461 91461 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43452 SAMTools SNP 93559 93559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold43452 SAMTools SNP 93566 93566 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C0.17%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43452 SAMTools SNP 109398 109398 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold43452 SAMTools SNP 147546 147546 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43452 SAMTools SNP 147548 147548 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C53:56 scaffold43452 SAMTools SNP 147744 147744 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C78%2C0:99 scaffold43452 SAMTools SNP 147840 147840 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C30%2C0:57 scaffold43452 SAMTools SNP 148176 148176 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.28%2C3.3e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43452 SAMTools SNP 148341 148341 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C84%2C0:99 scaffold43452 SAMTools SNP 148821 148821 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold43452 SAMTools SNP 149127 149127 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43452 SAMTools SNP 149482 149482 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C39%2C0:75 scaffold43452 SAMTools SNP 158267 158267 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C172:54 scaffold43452 SAMTools SNP 159098 159098 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold43452 SAMTools SNP 159106 159106 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43452 SAMTools SNP 159164 159164 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43452 SAMTools SNP 165643 165643 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.011%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43452 SAMTools SNP 165649 165649 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43452 SAMTools SNP 165661 165661 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.0023%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43452 SAMTools SNP 166510 166510 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.038%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold43452 SAMTools SNP 166528 166528 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43452 SAMTools SNP 166588 166588 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C0.0003%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 166612 166612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C0.16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 168406 168406 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43452 SAMTools SNP 177922 177922 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C24%2C0:45 scaffold43452 SAMTools SNP 177934 177934 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43452 SAMTools SNP 177943 177943 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43452 SAMTools SNP 178840 178840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 180837 180837 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C51%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43452 SAMTools SNP 181046 181046 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold43452 SAMTools SNP 181077 181077 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43452 SAMTools SNP 181832 181832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C9.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 181871 181871 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C6%2C74%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 182083 182083 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C24%2C70%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C8.8e-07%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 182457 182457 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C26%2C1%2C17%3BMQ%3D50%3BFQ%3D31%3BPV4%3D6.6e-06%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43452 SAMTools SNP 182512 182512 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C1%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 182916 182916 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0019%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43452 SAMTools SNP 184155 184155 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43452 SAMTools SNP 184335 184335 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43452 SAMTools SNP 186338 186338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43452 SAMTools SNP 186649 186649 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C15%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43452 SAMTools SNP 191984 191984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43452 SAMTools SNP 196917 196917 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold43452 SAMTools SNP 197423 197423 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43452 SAMTools SNP 197688 197688 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43452 SAMTools SNP 198272 198272 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43452 SAMTools SNP 198290 198290 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43452 SAMTools SNP 198323 198323 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43452 SAMTools SNP 198829 198829 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 204143 204143 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43452 SAMTools SNP 204161 204161 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.39%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C220:57 scaffold43452 SAMTools SNP 204164 204164 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0035%2C0.012%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold43452 SAMTools SNP 204787 204787 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C219:99 scaffold43452 SAMTools SNP 207779 207779 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43452 SAMTools SNP 208225 208225 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C99%2C0:99 scaffold43452 SAMTools SNP 208970 208970 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43452 SAMTools SNP 214116 214116 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43452 SAMTools SNP 214158 214158 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43452 SAMTools SNP 214178 214178 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43452 SAMTools SNP 214220 214220 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.34%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43452 SAMTools SNP 214766 214766 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.049%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold43452 SAMTools SNP 214823 214823 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C7%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43452 SAMTools SNP 214844 214844 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43452 SAMTools SNP 216384 216384 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.39%2C0.073%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C207:99 scaffold43452 SAMTools SNP 216396 216396 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold43452 SAMTools SNP 216423 216423 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43452 SAMTools SNP 220974 220974 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold43452 SAMTools SNP 221919 221919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43452 SAMTools SNP 222574 222574 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C245:99 scaffold43452 SAMTools SNP 222598 222598 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.036%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C254:99 scaffold43452 SAMTools SNP 223345 223345 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.24%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43452 SAMTools SNP 223378 223378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 224451 224451 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43452 SAMTools SNP 224475 224475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43452 SAMTools SNP 225738 225738 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43452 SAMTools SNP 225741 225741 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43452 SAMTools SNP 225834 225834 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43452 SAMTools SNP 227763 227763 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C245:99 scaffold43452 SAMTools SNP 227830 227830 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C18%2C0:33 scaffold43452 SAMTools SNP 227847 227847 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43452 SAMTools SNP 227998 227998 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43452 SAMTools SNP 228025 228025 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43452 SAMTools SNP 228403 228403 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D45.6%3BPV4%3D0.33%2C8.3e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C83:76 scaffold43452 SAMTools SNP 228841 228841 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 229138 229138 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 229192 229192 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.13%2C1.1e-07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43452 SAMTools SNP 229264 229264 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.029%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43452 SAMTools SNP 229276 229276 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43452 SAMTools SNP 229624 229624 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 230075 230075 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 230303 230303 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold43452 SAMTools SNP 230518 230518 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43452 SAMTools SNP 231138 231138 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C160:42 scaffold43452 SAMTools SNP 231402 231402 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43452 SAMTools SNP 231519 231519 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C84%2C0:99 scaffold43452 SAMTools SNP 232382 232382 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43452 SAMTools SNP 232391 232391 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 232442 232442 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 232577 232577 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold43452 SAMTools SNP 232946 232946 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.045%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C107:99 scaffold43452 SAMTools SNP 232995 232995 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C35:38 scaffold43452 SAMTools SNP 233066 233066 43.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold43452 SAMTools SNP 233096 233096 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43452 SAMTools SNP 233114 233114 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43452 SAMTools SNP 233615 233615 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold43452 SAMTools SNP 233975 233975 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0074%2C0.082%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43452 SAMTools SNP 234011 234011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 234409 234409 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43452 SAMTools SNP 234484 234484 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C8.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C197:37 scaffold43452 SAMTools SNP 234617 234617 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43452 SAMTools SNP 235793 235793 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold43452 SAMTools SNP 235812 235812 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43452 SAMTools SNP 245324 245324 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C54%2C0:99 scaffold43452 SAMTools SNP 245869 245869 37.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold43494 SAMTools SNP 7862 7862 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 7946 7946 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 8022 8022 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 19767 19767 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 19773 19773 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 106401 106401 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43494 SAMTools SNP 114676 114676 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0002%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43494 SAMTools SNP 128766 128766 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43494 SAMTools SNP 131425 131425 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 134125 134125 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C6%2C0%3BMQ%3D49%3BFQ%3D71%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43494 SAMTools SNP 134152 134152 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C6%2C28%2C0%3BMQ%3D49%3BFQ%3D152%3BPV4%3D0.17%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43494 SAMTools SNP 137382 137382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C159%2C55%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.028%2C0.26%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 137403 137403 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C92%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43494 SAMTools SNP 137451 137451 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43494 SAMTools SNP 137897 137897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43494 SAMTools SNP 137924 137924 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C26%2C61%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1.3e-15%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 138026 138026 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43494 SAMTools SNP 141344 141344 6.19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C89%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C255%2C0:48 scaffold43494 SAMTools SNP 143984 143984 9.51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C90%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C255%2C0:60 scaffold43494 SAMTools SNP 147650 147650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1073%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D379%2C18%2C365%2C196%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 148923 148923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D934%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C558%2C204%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-92%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 149007 149007 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C234%2C15%2C298%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00054%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 149426 149426 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C34%2C51%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.28%2C1.1e-88%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43494 SAMTools SNP 149441 149441 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C30%2C0%2C212%3BMQ%3D50%3BFQ%3D-156%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43494 SAMTools SNP 149443 149443 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C189%2C0%2C70%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.014%2C1%2C1%2C9.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43494 SAMTools SNP 149886 149886 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C244%2C0%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 149939 149939 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.28%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C94:97 scaffold43494 SAMTools SNP 150456 150456 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.53%2C0.05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold43494 SAMTools SNP 153026 153026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43494 SAMTools SNP 153487 153487 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C6%2C36%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 154597 154597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43494 SAMTools SNP 154972 154972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43494 SAMTools SNP 154990 154990 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 155826 155826 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 156504 156504 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.23%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43494 SAMTools SNP 156916 156916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43494 SAMTools SNP 156964 156964 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43494 SAMTools SNP 157030 157030 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C31%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43494 SAMTools SNP 160134 160134 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43494 SAMTools SNP 160175 160175 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 160766 160766 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43494 SAMTools SNP 162159 162159 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C6%2C43%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 163023 163023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43494 SAMTools SNP 163056 163056 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C2.6e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C246:99 scaffold43494 SAMTools SNP 163071 163071 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C144:80 scaffold43494 SAMTools SNP 163508 163508 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C88:65 scaffold43494 SAMTools SNP 166537 166537 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43494 SAMTools SNP 166555 166555 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43494 SAMTools SNP 167165 167165 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43494 SAMTools SNP 167205 167205 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43494 SAMTools SNP 167311 167311 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold43494 SAMTools SNP 167613 167613 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 168742 168742 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 169660 169660 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 170349 170349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43494 SAMTools SNP 171853 171853 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43494 SAMTools SNP 171898 171898 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43494 SAMTools SNP 172797 172797 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43494 SAMTools SNP 172848 172848 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43494 SAMTools SNP 172923 172923 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43494 SAMTools SNP 172932 172932 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43494 SAMTools SNP 173518 173518 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43494 SAMTools SNP 174097 174097 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43494 SAMTools SNP 178320 178320 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43494 SAMTools SNP 178395 178395 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C102%2C0:99 scaffold43494 SAMTools SNP 178429 178429 35.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C17%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C5:8 scaffold43494 SAMTools SNP 178769 178769 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C124:99 scaffold43494 SAMTools SNP 178828 178828 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C17%2C41%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43494 SAMTools SNP 179449 179449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43494 SAMTools SNP 179461 179461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43494 SAMTools SNP 179632 179632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C45%2C76%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-06%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43494 SAMTools SNP 179985 179985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43494 SAMTools SNP 180054 180054 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43494 SAMTools SNP 184791 184791 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43494 SAMTools SNP 184824 184824 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43494 SAMTools SNP 267660 267660 48.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold43500 SAMTools SNP 1846 1846 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C24%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C248:99 scaffold43500 SAMTools SNP 1996 1996 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43500 SAMTools SNP 2387 2387 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43500 SAMTools SNP 6798 6798 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C461%2C260%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0098%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43500 SAMTools SNP 8022 8022 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 16582 16582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43500 SAMTools SNP 16604 16604 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C45%2C0:87 scaffold43500 SAMTools SNP 24638 24638 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 35659 35659 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43500 SAMTools SNP 36547 36547 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43500 SAMTools SNP 56842 56842 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.5e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43500 SAMTools SNP 58176 58176 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold43500 SAMTools SNP 58305 58305 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.12%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C185:99 scaffold43500 SAMTools SNP 59858 59858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43500 SAMTools SNP 60442 60442 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43500 SAMTools SNP 60525 60525 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43500 SAMTools SNP 119401 119401 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 119457 119457 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C75%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43500 SAMTools SNP 120070 120070 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C83%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43500 SAMTools SNP 120141 120141 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C41%2C39%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43500 SAMTools SNP 120483 120483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C1%2C49%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold43500 SAMTools SNP 121487 121487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43500 SAMTools SNP 121505 121505 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 121530 121530 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43500 SAMTools SNP 122193 122193 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C84%2C18%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43500 SAMTools SNP 124398 124398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C40%2C28%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43500 SAMTools SNP 125228 125228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.41%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43500 SAMTools SNP 125344 125344 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold43500 SAMTools SNP 125662 125662 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43500 SAMTools SNP 173718 173718 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43500 SAMTools SNP 177256 177256 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D29%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C36%2C0:69 scaffold43500 SAMTools SNP 177949 177949 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D30%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C33%2C0:63 scaffold43500 SAMTools SNP 177989 177989 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C6%3BMQ%3D45%3BFQ%3D-7.78%3BPV4%3D0.4%2C0.26%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C20:23 scaffold43500 SAMTools SNP 178560 178560 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.33%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold43500 SAMTools SNP 178593 178593 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold43500 SAMTools SNP 179138 179138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43500 SAMTools SNP 180984 180984 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold43500 SAMTools SNP 181011 181011 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43500 SAMTools SNP 181545 181545 40.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold43500 SAMTools SNP 186106 186106 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D898%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C895%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43500 SAMTools SNP 190006 190006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1564%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C675%2C885%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43500 SAMTools SNP 190036 190036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1178%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C233%2C169%2C760%3BMQ%3D47%3BFQ%3D99%3BPV4%3D1.3e-06%2C1%2C1%2C8.2e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold43500 SAMTools SNP 190063 190063 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D794%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C1%2C781%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D1%2C4.1e-94%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C255%2C0:99 scaffold43500 SAMTools SNP 190081 190081 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D797%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C116%2C2%2C678%3BMQ%3D46%3BFQ%3D-227%3BPV4%3D1%2C1.4e-305%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C200%2C0:99 scaffold43500 SAMTools SNP 190165 190165 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C1%3BMQ%3D4%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C255%2C0:90 scaffold43500 SAMTools SNP 190168 190168 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C286%2C2%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C255%2C0:99 scaffold43500 SAMTools SNP 195273 195273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43500 SAMTools SNP 196998 196998 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold43500 SAMTools SNP 197853 197853 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43500 SAMTools SNP 200879 200879 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43500 SAMTools SNP 200906 200906 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold43500 SAMTools SNP 200984 200984 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.027%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43500 SAMTools SNP 202419 202419 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 212485 212485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold43500 SAMTools SNP 213246 213246 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold43500 SAMTools SNP 213294 213294 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43500 SAMTools SNP 213503 213503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43500 SAMTools SNP 213573 213573 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold43500 SAMTools SNP 214010 214010 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43500 SAMTools SNP 214077 214077 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43500 SAMTools SNP 214110 214110 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold43500 SAMTools SNP 214128 214128 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.31%2C0.025%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43500 SAMTools SNP 215313 215313 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43500 SAMTools SNP 215683 215683 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43500 SAMTools SNP 216848 216848 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43500 SAMTools SNP 217380 217380 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 218139 218139 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43500 SAMTools SNP 219881 219881 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C48%2C0:93 scaffold43500 SAMTools SNP 220180 220180 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C240:99 scaffold43500 SAMTools SNP 220614 220614 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43500 SAMTools SNP 220856 220856 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43500 SAMTools SNP 220934 220934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43500 SAMTools SNP 220949 220949 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43500 SAMTools SNP 222787 222787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.18%2C0.065%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43500 SAMTools SNP 223258 223258 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43500 SAMTools SNP 223976 223976 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43500 SAMTools SNP 224012 224012 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C3.1e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold43500 SAMTools SNP 224081 224081 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.43%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C232:99 scaffold43500 SAMTools SNP 225374 225374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43500 SAMTools SNP 225833 225833 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold43500 SAMTools SNP 225904 225904 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.031%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43500 SAMTools SNP 226428 226428 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold43500 SAMTools SNP 227168 227168 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold43500 SAMTools SNP 227535 227535 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C34%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C213:99 scaffold43500 SAMTools SNP 227678 227678 8.22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold43500 SAMTools SNP 229181 229181 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D1%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C80:70 scaffold43500 SAMTools SNP 229217 229217 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43500 SAMTools SNP 231386 231386 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold43500 SAMTools SNP 232147 232147 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C45%2C0:84 scaffold43500 SAMTools SNP 232448 232448 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.6%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43500 SAMTools SNP 233183 233183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43500 SAMTools SNP 235314 235314 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold43500 SAMTools SNP 235762 235762 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold43500 SAMTools SNP 236554 236554 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C23%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C111%2C0:99 scaffold43500 SAMTools SNP 236565 236565 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C16%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0045%2C1.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43500 SAMTools SNP 237755 237755 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43500 SAMTools SNP 237770 237770 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 239329 239329 46.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold43500 SAMTools SNP 239443 239443 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43500 SAMTools SNP 240960 240960 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C231:80 scaffold43500 SAMTools SNP 240969 240969 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C25%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C77:80 scaffold43500 SAMTools SNP 242806 242806 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0014%2C7.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C232:42 scaffold43500 SAMTools SNP 242870 242870 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00023%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C110:36 scaffold43500 SAMTools SNP 243553 243553 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold43500 SAMTools SNP 243643 243643 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C151:58 scaffold43500 SAMTools SNP 248815 248815 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43500 SAMTools SNP 249044 249044 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.12%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C212:99 scaffold43500 SAMTools SNP 250029 250029 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D10%2C3%2C14%2C11%3BMQ%3D27%3BFQ%3D-10.4%3BPV4%3D0.29%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C17:20 scaffold43500 SAMTools SNP 253429 253429 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold43500 SAMTools SNP 253435 253435 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43500 SAMTools SNP 254011 254011 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43500 SAMTools SNP 254119 254119 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.032%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold43500 SAMTools SNP 254367 254367 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43500 SAMTools SNP 256453 256453 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43500 SAMTools SNP 256492 256492 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43500 SAMTools SNP 257259 257259 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43500 SAMTools SNP 257841 257841 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43500 SAMTools SNP 257892 257892 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43500 SAMTools SNP 257940 257940 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43500 SAMTools SNP 258495 258495 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43500 SAMTools SNP 258507 258507 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43500 SAMTools SNP 259143 259143 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.4e-08%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C119:60 scaffold43500 SAMTools SNP 259198 259198 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43500 SAMTools SNP 259202 259202 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43500 SAMTools SNP 265389 265389 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C45%2C0%2C21%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.016%2C0.00026%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43500 SAMTools SNP 265394 265394 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C60%2C0%2C12%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C0.0095%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43520 SAMTools SNP 1035 1035 5.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C1%2C0:4 scaffold43520 SAMTools SNP 1397 1397 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 2452 2452 24.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C47%2C41%2C55%2C0%2C52:10 scaffold43520 SAMTools SNP 2718 2718 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43520 SAMTools SNP 4894 4894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 6214 6214 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C144:99 scaffold43520 SAMTools SNP 6280 6280 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.22%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43520 SAMTools SNP 7367 7367 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 9418 9418 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C60%2C11%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 12025 12025 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold43520 SAMTools SNP 12037 12037 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.092%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold43520 SAMTools SNP 12922 12922 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.39%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43520 SAMTools SNP 12976 12976 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43520 SAMTools SNP 12994 12994 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43520 SAMTools SNP 13628 13628 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43520 SAMTools SNP 13631 13631 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C233:66 scaffold43520 SAMTools SNP 13676 13676 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold43520 SAMTools SNP 13721 13721 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43520 SAMTools SNP 14520 14520 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.2e-12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold43520 SAMTools SNP 19548 19548 51.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold43520 SAMTools SNP 21487 21487 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43520 SAMTools SNP 26734 26734 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.12%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43520 SAMTools SNP 26752 26752 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.29%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43520 SAMTools SNP 34274 34274 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43520 SAMTools SNP 52692 52692 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold43520 SAMTools SNP 55072 55072 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43520 SAMTools SNP 55157 55157 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43520 SAMTools SNP 55445 55445 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43520 SAMTools SNP 55646 55646 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 55652 55652 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 56726 56726 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold43520 SAMTools SNP 57169 57169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 58817 58817 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.44%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C192:72 scaffold43520 SAMTools SNP 58845 58845 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 58874 58874 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 59273 59273 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 59291 59291 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 59299 59299 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43520 SAMTools SNP 59500 59500 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 62758 62758 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43520 SAMTools SNP 62778 62778 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43520 SAMTools SNP 62826 62826 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C21%2C0:39 scaffold43520 SAMTools SNP 63191 63191 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43520 SAMTools SNP 63413 63413 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold43520 SAMTools SNP 63416 63416 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold43520 SAMTools SNP 63453 63453 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43520 SAMTools SNP 63479 63479 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 63509 63509 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43520 SAMTools SNP 64079 64079 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 64109 64109 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43520 SAMTools SNP 70399 70399 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43520 SAMTools SNP 71172 71172 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold43520 SAMTools SNP 71190 71190 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold43520 SAMTools SNP 71975 71975 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C51%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C2.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 72251 72251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C69%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold43520 SAMTools SNP 72282 72282 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.028%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43520 SAMTools SNP 72961 72961 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 73928 73928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C92%2C2%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 73941 73941 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C91%2C18%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 74129 74129 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C66%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 74283 74283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C283%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43520 SAMTools SNP 74782 74782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43520 SAMTools SNP 75055 75055 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C17%2C52%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 76405 76405 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.51%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C227:39 scaffold43520 SAMTools SNP 79115 79115 51.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C189%2C171%2C189%2C0%2C171:33 scaffold43520 SAMTools SNP 79118 79118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43520 SAMTools SNP 79439 79439 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.071%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43520 SAMTools SNP 79466 79466 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.52%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold43520 SAMTools SNP 79547 79547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43520 SAMTools SNP 79739 79739 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43520 SAMTools SNP 79792 79792 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43520 SAMTools SNP 80308 80308 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43520 SAMTools SNP 80365 80365 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C27%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43520 SAMTools SNP 81205 81205 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C21%2C0%3BMQ%3D47%3BFQ%3D93%3BPV4%3D0.0012%2C8.5e-13%2C2.3e-05%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43520 SAMTools SNP 81946 81946 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C20%2C18%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.34%2C1%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 81984 81984 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C3%2C2%3BMQ%3D49%3BFQ%3D54%3BPV4%3D0.0053%2C1%2C0.0053%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43520 SAMTools SNP 82125 82125 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 82763 82763 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 82790 82790 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C23:26 scaffold43520 SAMTools SNP 83320 83320 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold43520 SAMTools SNP 83754 83754 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43520 SAMTools SNP 83928 83928 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43520 SAMTools SNP 84451 84451 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00015%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold43520 SAMTools SNP 84475 84475 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.39%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold43520 SAMTools SNP 84508 84508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 84915 84915 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.61%2C0.33%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43520 SAMTools SNP 84920 84920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43520 SAMTools SNP 84972 84972 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C24%2C0:45 scaffold43520 SAMTools SNP 85002 85002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43520 SAMTools SNP 85694 85694 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43520 SAMTools SNP 85721 85721 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold43520 SAMTools SNP 85724 85724 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C223:69 scaffold43520 SAMTools SNP 85751 85751 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold43520 SAMTools SNP 86744 86744 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold43520 SAMTools SNP 86774 86774 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43520 SAMTools SNP 87687 87687 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C199%2C0:99 scaffold43520 SAMTools SNP 87747 87747 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43520 SAMTools SNP 87765 87765 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C2%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.088%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 88054 88054 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C1%2C16%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.66%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43520 SAMTools SNP 88095 88095 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43520 SAMTools SNP 88246 88246 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43520 SAMTools SNP 88270 88270 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43520 SAMTools SNP 88845 88845 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43520 SAMTools SNP 88898 88898 40.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold43520 SAMTools SNP 88936 88936 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 89221 89221 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43520 SAMTools SNP 89248 89248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43520 SAMTools SNP 89281 89281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43520 SAMTools SNP 89578 89578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C65%2C14%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 90027 90027 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C71%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 90644 90644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C174%2C16%2C191%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 94174 94174 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C16%2C31%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.21%2C1%2C5.6e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 99495 99495 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C39%2C0:75 scaffold43520 SAMTools SNP 99702 99702 69.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold43520 SAMTools SNP 99759 99759 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43520 SAMTools SNP 102096 102096 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C237:99 scaffold43520 SAMTools SNP 102114 102114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold43520 SAMTools SNP 105486 105486 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43520 SAMTools SNP 105561 105561 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43520 SAMTools SNP 105577 105577 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.49%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C36:38 scaffold43520 SAMTools SNP 105594 105594 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 105603 105603 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C236:99 scaffold43520 SAMTools SNP 107663 107663 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43520 SAMTools SNP 110095 110095 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 110097 110097 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 111753 111753 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43520 SAMTools SNP 111858 111858 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43520 SAMTools SNP 115997 115997 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43520 SAMTools SNP 116032 116032 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 139455 139455 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.093%2C0.13%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43520 SAMTools SNP 143022 143022 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43520 SAMTools SNP 144965 144965 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold43520 SAMTools SNP 144968 144968 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43520 SAMTools SNP 144991 144991 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 145038 145038 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43520 SAMTools SNP 145039 145039 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.28%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43520 SAMTools SNP 145064 145064 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43520 SAMTools SNP 147163 147163 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C37%2C10%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00023%2C1%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43520 SAMTools SNP 148210 148210 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C99%2C1%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 150125 150125 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43520 SAMTools SNP 150499 150499 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C34%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.29%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C237:99 scaffold43520 SAMTools SNP 155227 155227 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold43520 SAMTools SNP 155947 155947 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C226:99 scaffold43520 SAMTools SNP 158765 158765 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C239:99 scaffold43520 SAMTools SNP 165353 165353 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold43520 SAMTools SNP 167012 167012 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43520 SAMTools SNP 167039 167039 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 167050 167050 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43520 SAMTools SNP 167316 167316 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 167520 167520 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43520 SAMTools SNP 167523 167523 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43520 SAMTools SNP 168726 168726 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43520 SAMTools SNP 169464 169464 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43520 SAMTools SNP 169485 169485 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 169506 169506 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C0.43%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C250:99 scaffold43520 SAMTools SNP 169705 169705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C67%2C2%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold43520 SAMTools SNP 169746 169746 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.43%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C254:99 scaffold43520 SAMTools SNP 169776 169776 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.035%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43520 SAMTools SNP 170173 170173 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C25%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43520 SAMTools SNP 170219 170219 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.012%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold43520 SAMTools SNP 171593 171593 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43520 SAMTools SNP 171904 171904 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43520 SAMTools SNP 171907 171907 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.03%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43520 SAMTools SNP 172060 172060 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C227:99 scaffold43520 SAMTools SNP 172581 172581 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.037%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 172934 172934 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 172952 172952 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 172995 172995 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43520 SAMTools SNP 173282 173282 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.11%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43520 SAMTools SNP 173303 173303 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 173580 173580 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 173607 173607 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C2%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.11%2C0.12%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43520 SAMTools SNP 174060 174060 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43520 SAMTools SNP 174071 174071 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.085%2C5.4e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C166:87 scaffold43520 SAMTools SNP 174162 174162 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold43520 SAMTools SNP 174800 174800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 174851 174851 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43520 SAMTools SNP 174872 174872 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43520 SAMTools SNP 174883 174883 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43520 SAMTools SNP 174968 174968 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43520 SAMTools SNP 175049 175049 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold43520 SAMTools SNP 175371 175371 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43520 SAMTools SNP 175392 175392 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C7.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43520 SAMTools SNP 175983 175983 111 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C47%2C32%2C137%2C0%2C134:27 scaffold43520 SAMTools SNP 176930 176930 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43520 SAMTools SNP 176949 176949 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43520 SAMTools SNP 177252 177252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 177263 177263 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 177672 177672 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C238:99 scaffold43520 SAMTools SNP 177687 177687 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold43520 SAMTools SNP 177699 177699 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C163:99 scaffold43520 SAMTools SNP 177876 177876 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C77:80 scaffold43520 SAMTools SNP 178361 178361 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C154:77 scaffold43520 SAMTools SNP 178534 178534 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43520 SAMTools SNP 178544 178544 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.048%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C180:93 scaffold43520 SAMTools SNP 178898 178898 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43520 SAMTools SNP 178965 178965 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43520 SAMTools SNP 179027 179027 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43520 SAMTools SNP 179377 179377 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43520 SAMTools SNP 179536 179536 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43520 SAMTools SNP 179554 179554 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43520 SAMTools SNP 179566 179566 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43520 SAMTools SNP 187543 187543 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43520 SAMTools SNP 193491 193491 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.00042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold43520 SAMTools SNP 193520 193520 17.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold43520 SAMTools SNP 199246 199246 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43520 SAMTools SNP 199753 199753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 199756 199756 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 200269 200269 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C213:60 scaffold43520 SAMTools SNP 200289 200289 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43520 SAMTools SNP 200658 200658 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43520 SAMTools SNP 200981 200981 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 201053 201053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43520 SAMTools SNP 201469 201469 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.61%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C225:99 scaffold43520 SAMTools SNP 202663 202663 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43520 SAMTools SNP 202705 202705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43520 SAMTools SNP 202798 202798 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43520 SAMTools SNP 203330 203330 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43520 SAMTools SNP 203807 203807 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 203921 203921 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold43520 SAMTools SNP 204537 204537 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43520 SAMTools SNP 205275 205275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43520 SAMTools SNP 205320 205320 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43520 SAMTools SNP 205370 205370 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43520 SAMTools SNP 205751 205751 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold43520 SAMTools SNP 205823 205823 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43520 SAMTools SNP 205928 205928 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C65:99 scaffold43520 SAMTools SNP 206439 206439 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C42%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43520 SAMTools SNP 206584 206584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43520 SAMTools SNP 206782 206782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.44%2C0.23%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold43520 SAMTools SNP 207000 207000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43520 SAMTools SNP 207524 207524 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.017%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C249:99 scaffold43520 SAMTools SNP 207677 207677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43520 SAMTools SNP 207970 207970 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43520 SAMTools SNP 208212 208212 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.025%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold43520 SAMTools SNP 208236 208236 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43520 SAMTools SNP 208271 208271 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.33%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C167:99 scaffold43520 SAMTools SNP 208295 208295 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold43520 SAMTools SNP 208616 208616 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43520 SAMTools SNP 208720 208720 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C214:99 scaffold43520 SAMTools SNP 209089 209089 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.33%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43520 SAMTools SNP 209125 209125 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.18%2C7.3e-11%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43520 SAMTools SNP 209127 209127 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.33%2C2.7e-10%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43520 SAMTools SNP 209155 209155 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 209346 209346 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 209688 209688 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C14%2C17%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.063%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold43520 SAMTools SNP 210005 210005 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C12%2C21%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43520 SAMTools SNP 210011 210011 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C48%2C12%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.03%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold43520 SAMTools SNP 210068 210068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C50%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.099%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 210300 210300 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 210647 210647 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C16%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C248:99 scaffold43520 SAMTools SNP 210669 210669 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43520 SAMTools SNP 212166 212166 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C1%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43520 SAMTools SNP 212202 212202 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold43520 SAMTools SNP 212844 212844 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold43520 SAMTools SNP 212916 212916 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C8%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.69%2C1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43520 SAMTools SNP 213157 213157 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold43520 SAMTools SNP 213372 213372 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C24%2C12%2C27%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0043%2C1.4e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43520 SAMTools SNP 213996 213996 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C13%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.015%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C216:99 scaffold43520 SAMTools SNP 214058 214058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C19%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold43520 SAMTools SNP 215022 215022 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C0.00058%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43520 SAMTools SNP 215027 215027 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.26%2C0.0039%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43520 SAMTools SNP 215224 215224 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C22%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 215596 215596 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43520 SAMTools SNP 215614 215614 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 216740 216740 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 217263 217263 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.22%2C0.023%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43520 SAMTools SNP 217856 217856 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43520 SAMTools SNP 218062 218062 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43520 SAMTools SNP 218923 218923 58 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C191%2C164%2C227%2C0%2C209:51 scaffold43520 SAMTools SNP 219486 219486 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43520 SAMTools SNP 219523 219523 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43520 SAMTools SNP 220031 220031 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0033%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43520 SAMTools SNP 226955 226955 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43520 SAMTools SNP 226973 226973 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.11%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43520 SAMTools SNP 226985 226985 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43520 SAMTools SNP 227144 227144 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43520 SAMTools SNP 227177 227177 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.4e-14%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C195:62 scaffold43520 SAMTools SNP 227926 227926 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C82:33 scaffold43520 SAMTools SNP 229085 229085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C26%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43520 SAMTools SNP 229412 229412 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C32%2C7%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.44%2C9.1e-42%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43520 SAMTools SNP 229425 229425 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0015%2C0.017%2C1%2C1.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43520 SAMTools SNP 229486 229486 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C0%2C14%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43520 SAMTools SNP 229638 229638 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C0%2C27%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.51%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43520 SAMTools SNP 229696 229696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C3%2C23%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.1%2C0.26%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43520 SAMTools SNP 229714 229714 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.49%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold43520 SAMTools SNP 233485 233485 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold43520 SAMTools SNP 233510 233510 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43520 SAMTools SNP 238701 238701 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43520 SAMTools SNP 239574 239574 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43520 SAMTools SNP 239603 239603 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43520 SAMTools SNP 240860 240860 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 240866 240866 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43520 SAMTools SNP 240937 240937 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43520 SAMTools SNP 245124 245124 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.036%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43520 SAMTools SNP 245167 245167 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43520 SAMTools SNP 246908 246908 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43520 SAMTools SNP 246944 246944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43520 SAMTools SNP 247473 247473 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43520 SAMTools SNP 247648 247648 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43520 SAMTools SNP 247798 247798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43520 SAMTools SNP 247813 247813 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43520 SAMTools SNP 248388 248388 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43520 SAMTools SNP 248433 248433 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43520 SAMTools SNP 248707 248707 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43520 SAMTools SNP 248807 248807 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43520 SAMTools SNP 249174 249174 31.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold43520 SAMTools SNP 257635 257635 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C21%2C0:39 scaffold43520 SAMTools SNP 258005 258005 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C111%2C0:99 scaffold43520 SAMTools SNP 258014 258014 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C32%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C1.9e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C67%2C0:99 scaffold43520 SAMTools SNP 259239 259239 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43522 SAMTools SNP 2349 2349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 2350 2350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 6897 6897 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C212:99 scaffold43522 SAMTools SNP 6899 6899 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43522 SAMTools SNP 7016 7016 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold43522 SAMTools SNP 12151 12151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 16283 16283 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43522 SAMTools SNP 17356 17356 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 19999 19999 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold43522 SAMTools SNP 30662 30662 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.44%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 30701 30701 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 34020 34020 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C139%2C9%2C89%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.042%2C1e-143%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43522 SAMTools SNP 34319 34319 178 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C149%2C12%2C131%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.27%2C3.4e-192%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold43522 SAMTools SNP 35331 35331 4.77 . . REF=N;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C28%2C25%2C33%2C0%2C30:3 scaffold43522 SAMTools SNP 46436 46436 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C27%2C0:51 scaffold43522 SAMTools SNP 47314 47314 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43522 SAMTools SNP 53334 53334 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43522 SAMTools SNP 55172 55172 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43522 SAMTools SNP 55716 55716 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43522 SAMTools SNP 55769 55769 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C16%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C147:99 scaffold43522 SAMTools SNP 55820 55820 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43522 SAMTools SNP 56179 56179 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43522 SAMTools SNP 56551 56551 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 56587 56587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43522 SAMTools SNP 56602 56602 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 56975 56975 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43522 SAMTools SNP 57515 57515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 57564 57564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 62140 62140 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 62793 62793 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold43522 SAMTools SNP 62844 62844 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold43522 SAMTools SNP 69935 69935 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 72033 72033 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold43522 SAMTools SNP 72367 72367 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C0%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.011%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43522 SAMTools SNP 72412 72412 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C19:22 scaffold43522 SAMTools SNP 72442 72442 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-113%3BPV4%3D0.36%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C86%2C0:99 scaffold43522 SAMTools SNP 73063 73063 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 73099 73099 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C26%2C69%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 73123 73123 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C159%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 73884 73884 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C86%2C0%2C68%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C2.1e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold43522 SAMTools SNP 76741 76741 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43522 SAMTools SNP 78726 78726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43522 SAMTools SNP 79218 79218 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43522 SAMTools SNP 80266 80266 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43522 SAMTools SNP 81939 81939 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43522 SAMTools SNP 82155 82155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 83054 83054 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.42%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43522 SAMTools SNP 83162 83162 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 85934 85934 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43522 SAMTools SNP 86545 86545 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 86912 86912 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43522 SAMTools SNP 87068 87068 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43522 SAMTools SNP 87088 87088 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold43522 SAMTools SNP 87127 87127 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43522 SAMTools SNP 87329 87329 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43522 SAMTools SNP 87354 87354 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43522 SAMTools SNP 87371 87371 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43522 SAMTools SNP 87738 87738 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C144:99 scaffold43522 SAMTools SNP 87745 87745 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.046%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C193:99 scaffold43522 SAMTools SNP 88071 88071 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C221:90 scaffold43522 SAMTools SNP 88191 88191 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43522 SAMTools SNP 88230 88230 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43522 SAMTools SNP 88671 88671 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold43522 SAMTools SNP 88701 88701 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold43522 SAMTools SNP 88872 88872 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43522 SAMTools SNP 89297 89297 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.071%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43522 SAMTools SNP 89541 89541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C45%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43522 SAMTools SNP 90135 90135 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold43522 SAMTools SNP 90467 90467 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43522 SAMTools SNP 90497 90497 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold43522 SAMTools SNP 90852 90852 201 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C166:99 scaffold43522 SAMTools SNP 90879 90879 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43522 SAMTools SNP 90883 90883 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43522 SAMTools SNP 90897 90897 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43522 SAMTools SNP 91501 91501 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C142:99 scaffold43522 SAMTools SNP 92220 92220 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.59%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold43522 SAMTools SNP 92249 92249 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43522 SAMTools SNP 92307 92307 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43522 SAMTools SNP 93238 93238 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43522 SAMTools SNP 93283 93283 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43522 SAMTools SNP 93319 93319 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 93794 93794 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43522 SAMTools SNP 94748 94748 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43522 SAMTools SNP 164048 164048 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43522 SAMTools SNP 165724 165724 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43522 SAMTools SNP 167203 167203 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 167252 167252 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 168217 168217 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C15%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 168253 168253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C41%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 168950 168950 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 168971 168971 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C163%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43522 SAMTools SNP 169200 169200 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.023%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43522 SAMTools SNP 169217 169217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C24%2C11%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D0.12%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold43522 SAMTools SNP 170642 170642 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold43522 SAMTools SNP 170675 170675 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C175:41 scaffold43522 SAMTools SNP 171230 171230 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43522 SAMTools SNP 171273 171273 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43522 SAMTools SNP 172957 172957 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43522 SAMTools SNP 172975 172975 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43522 SAMTools SNP 173752 173752 13.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D25%3BFQ%3D-29%3BPV4%3D1%2C0.38%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C2%2C0:4 scaffold43522 SAMTools SNP 173824 173824 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D32%3BFQ%3D-30%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C3%2C0:6 scaffold43522 SAMTools SNP 183544 183544 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43522 SAMTools SNP 183673 183673 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43522 SAMTools SNP 184785 184785 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43522 SAMTools SNP 184942 184942 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43522 SAMTools SNP 184956 184956 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 188544 188544 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43522 SAMTools SNP 189528 189528 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 202814 202814 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 208936 208936 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43522 SAMTools SNP 208949 208949 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold43522 SAMTools SNP 217964 217964 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43522 SAMTools SNP 237329 237329 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold43522 SAMTools SNP 237355 237355 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43522 SAMTools SNP 237425 237425 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43522 SAMTools SNP 237545 237545 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43522 SAMTools SNP 237731 237731 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43522 SAMTools SNP 237770 237770 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43522 SAMTools SNP 239435 239435 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43522 SAMTools SNP 239474 239474 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43522 SAMTools SNP 239495 239495 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold43522 SAMTools SNP 239765 239765 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold43522 SAMTools SNP 239816 239816 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43522 SAMTools SNP 241214 241214 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43522 SAMTools SNP 244166 244166 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 244167 244167 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 244321 244321 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 244329 244329 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 244770 244770 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold43522 SAMTools SNP 245059 245059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43522 SAMTools SNP 245709 245709 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold43522 SAMTools SNP 254851 254851 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43522 SAMTools SNP 255197 255197 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43522 SAMTools SNP 255219 255219 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43522 SAMTools SNP 256238 256238 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43522 SAMTools SNP 260240 260240 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43522 SAMTools SNP 260287 260287 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43522 SAMTools SNP 265362 265362 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43526 SAMTools SNP 2010 2010 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C27%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 2924 2924 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43526 SAMTools SNP 2984 2984 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43526 SAMTools SNP 3438 3438 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43526 SAMTools SNP 3567 3567 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43526 SAMTools SNP 3588 3588 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C78%2C1%3BMQ%3D50%3BFQ%3D-215%3BPV4%3D1%2C0.24%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C188%2C0:99 scaffold43526 SAMTools SNP 13147 13147 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43526 SAMTools SNP 13594 13594 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43526 SAMTools SNP 14497 14497 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43526 SAMTools SNP 23053 23053 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43526 SAMTools SNP 23330 23330 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43526 SAMTools SNP 44701 44701 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 44709 44709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 44774 44774 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D73%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.59%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43526 SAMTools SNP 44909 44909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D519%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C192%2C1%2C297%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 44927 44927 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D525%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C312%2C17%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 46794 46794 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C362%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 46869 46869 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C7:10 scaffold43526 SAMTools SNP 46872 46872 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold43526 SAMTools SNP 46932 46932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 49707 49707 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C250%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 49788 49788 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C36%2C0:69 scaffold43526 SAMTools SNP 49803 49803 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43526 SAMTools SNP 49870 49870 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0015%2C0.032%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43526 SAMTools SNP 49932 49932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C39%2C39%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00025%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 54662 54662 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C79%2C0%2C36%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43526 SAMTools SNP 54695 54695 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 54713 54713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43526 SAMTools SNP 54797 54797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 55993 55993 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C0%2C230%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.7e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 56008 56008 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D304%2C1%2C169%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C9.8e-168%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43526 SAMTools SNP 56020 56020 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D551%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D353%2C1%2C197%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C5.9e-98%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold43526 SAMTools SNP 56412 56412 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D981%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D287%2C165%2C232%2C291%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-09%2C0.03%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 56448 56448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D831%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C238%2C100%2C290%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 56535 56535 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D586%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C33%2C0:63 scaffold43526 SAMTools SNP 56607 56607 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 56610 56610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 57090 57090 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43526 SAMTools SNP 57141 57141 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C3%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.61%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43526 SAMTools SNP 57156 57156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C17%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C8.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 57177 57177 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C53%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold43526 SAMTools SNP 57903 57903 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D587%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C445%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 58020 58020 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43526 SAMTools SNP 58026 58026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C33%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold43526 SAMTools SNP 58350 58350 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C81%2C0:99 scaffold43526 SAMTools SNP 58431 58431 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43526 SAMTools SNP 59271 59271 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 59283 59283 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 59337 59337 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43526 SAMTools SNP 59358 59358 37.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold43526 SAMTools SNP 59649 59649 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C159%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 59676 59676 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C0%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold43526 SAMTools SNP 59705 59705 129 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C255%2C0%2C144%2C255%2C138:99 scaffold43526 SAMTools SNP 59792 59792 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C0%2C3%3BMQ%3D40%3BFQ%3D23%3BPV4%3D0.00034%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C197:53 scaffold43526 SAMTools SNP 59999 59999 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C1%2C3%3BMQ%3D41%3BFQ%3D61%3BPV4%3D0.00089%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C204:91 scaffold43526 SAMTools SNP 60074 60074 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C58%2C17%3BMQ%3D46%3BFQ%3D45%3BPV4%3D0.11%2C0.17%2C0.28%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C72:75 scaffold43526 SAMTools SNP 60273 60273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C28%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43526 SAMTools SNP 62111 62111 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43526 SAMTools SNP 62129 62129 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D45%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43526 SAMTools SNP 66544 66544 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1429%3BVDB%3D0.0414%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C67:28 scaffold43526 SAMTools SNP 66974 66974 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43526 SAMTools SNP 67994 67994 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C75%2C5%3BMQ%3D49%3BFQ%3D-57%3BPV4%3D9.8e-07%2C0.23%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C30%2C0:57 scaffold43526 SAMTools SNP 68073 68073 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1055%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D538%2C44%2C471%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-10%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 68726 68726 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43526 SAMTools SNP 70560 70560 22.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold43526 SAMTools SNP 74354 74354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D938%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43526 SAMTools SNP 74680 74680 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D581%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C342%2C3%2C155%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.57%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold43526 SAMTools SNP 90024 90024 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C4%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.093%2C0.0062%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43526 SAMTools SNP 90882 90882 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43526 SAMTools SNP 98637 98637 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43526 SAMTools SNP 99037 99037 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 99626 99626 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43526 SAMTools SNP 99674 99674 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43526 SAMTools SNP 99848 99848 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43526 SAMTools SNP 118264 118264 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C36%2C0:67 scaffold43526 SAMTools SNP 118724 118724 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C13%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.25%2C5.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43526 SAMTools SNP 119789 119789 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D41%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C87%2C0:99 scaffold43526 SAMTools SNP 120189 120189 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C4.8e-08%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C238:48 scaffold43526 SAMTools SNP 120875 120875 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C218:33 scaffold43526 SAMTools SNP 126253 126253 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43526 SAMTools SNP 126752 126752 16.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43526 SAMTools SNP 128880 128880 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43526 SAMTools SNP 137329 137329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43526 SAMTools SNP 141171 141171 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43526 SAMTools SNP 154679 154679 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43526 SAMTools SNP 168727 168727 140 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C33%2C0:63 scaffold43526 SAMTools SNP 168865 168865 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43526 SAMTools SNP 194866 194866 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 195647 195647 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 203539 203539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold43526 SAMTools SNP 203551 203551 88.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold43526 SAMTools SNP 204091 204091 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C3%2C36%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.67%2C5.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold43526 SAMTools SNP 205113 205113 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C17%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43526 SAMTools SNP 206039 206039 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D79%3BPV4%3D7.3e-05%2C2.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold43526 SAMTools SNP 238466 238466 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43526 SAMTools SNP 238499 238499 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.019%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43526 SAMTools SNP 239917 239917 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43526 SAMTools SNP 239998 239998 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43526 SAMTools SNP 240049 240049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43526 SAMTools SNP 242049 242049 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43526 SAMTools SNP 244340 244340 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.082%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold43526 SAMTools SNP 247445 247445 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold43526 SAMTools SNP 247749 247749 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43526 SAMTools SNP 257300 257300 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0372%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.36%2C7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold43526 SAMTools SNP 258207 258207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 258210 258210 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.3%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43526 SAMTools SNP 271285 271285 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C0.047%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43526 SAMTools SNP 271368 271368 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.13%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43530 SAMTools SNP 3728 3728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 8538 8538 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 8544 8544 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 10516 10516 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 10578 10578 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 10848 10848 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 24375 24375 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C36%2C0:68 scaffold43530 SAMTools SNP 24606 24606 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C48%2C0:93 scaffold43530 SAMTools SNP 25225 25225 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 25270 25270 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 25705 25705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43530 SAMTools SNP 28005 28005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43530 SAMTools SNP 28039 28039 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43530 SAMTools SNP 28409 28409 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C72%2C0:99 scaffold43530 SAMTools SNP 28491 28491 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43530 SAMTools SNP 28514 28514 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43530 SAMTools SNP 29575 29575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43530 SAMTools SNP 30393 30393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43530 SAMTools SNP 30454 30454 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43530 SAMTools SNP 31035 31035 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43530 SAMTools SNP 32327 32327 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43530 SAMTools SNP 32334 32334 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43530 SAMTools SNP 32361 32361 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C33%2C0:63 scaffold43530 SAMTools SNP 36476 36476 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.00016%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43530 SAMTools SNP 36498 36498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.43%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold43530 SAMTools SNP 36552 36552 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43530 SAMTools SNP 37783 37783 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43530 SAMTools SNP 38590 38590 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.027%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43530 SAMTools SNP 40967 40967 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43530 SAMTools SNP 41630 41630 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43530 SAMTools SNP 41762 41762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43530 SAMTools SNP 42188 42188 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold43530 SAMTools SNP 44470 44470 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43530 SAMTools SNP 44733 44733 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 46310 46310 94.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C15%2C0:27 scaffold43530 SAMTools SNP 47675 47675 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold43530 SAMTools SNP 47676 47676 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43530 SAMTools SNP 47739 47739 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43530 SAMTools SNP 48259 48259 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43530 SAMTools SNP 48265 48265 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold43530 SAMTools SNP 80836 80836 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold43530 SAMTools SNP 80929 80929 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43530 SAMTools SNP 80959 80959 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43530 SAMTools SNP 80995 80995 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 85814 85814 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43530 SAMTools SNP 100243 100243 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43530 SAMTools SNP 100288 100288 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43530 SAMTools SNP 100342 100342 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43530 SAMTools SNP 101016 101016 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43530 SAMTools SNP 101622 101622 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43530 SAMTools SNP 101631 101631 47.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43530 SAMTools SNP 101730 101730 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43530 SAMTools SNP 102134 102134 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold43530 SAMTools SNP 102146 102146 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.52%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold43530 SAMTools SNP 102198 102198 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.33%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43530 SAMTools SNP 102652 102652 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C135:99 scaffold43530 SAMTools SNP 102703 102703 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold43530 SAMTools SNP 103130 103130 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43530 SAMTools SNP 103136 103136 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43530 SAMTools SNP 103193 103193 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43530 SAMTools SNP 103205 103205 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43530 SAMTools SNP 103211 103211 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.39%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold43530 SAMTools SNP 103717 103717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43530 SAMTools SNP 103732 103732 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold43530 SAMTools SNP 103750 103750 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.47%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold43530 SAMTools SNP 103777 103777 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43530 SAMTools SNP 103780 103780 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold43530 SAMTools SNP 104316 104316 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C218:99 scaffold43530 SAMTools SNP 104867 104867 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43530 SAMTools SNP 105506 105506 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C17%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43530 SAMTools SNP 105527 105527 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43530 SAMTools SNP 108389 108389 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C2e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C254:99 scaffold43530 SAMTools SNP 113422 113422 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold43530 SAMTools SNP 114325 114325 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold43530 SAMTools SNP 114327 114327 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.1%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C66:41 scaffold43530 SAMTools SNP 114329 114329 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43530 SAMTools SNP 115340 115340 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C43%2C22%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.38%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 115363 115363 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C7%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.052%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 115951 115951 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 116460 116460 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold43530 SAMTools SNP 116493 116493 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.24%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43530 SAMTools SNP 116505 116505 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C180:99 scaffold43530 SAMTools SNP 116523 116523 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold43530 SAMTools SNP 117003 117003 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43530 SAMTools SNP 117067 117067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43530 SAMTools SNP 117649 117649 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43530 SAMTools SNP 117736 117736 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43530 SAMTools SNP 118191 118191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43530 SAMTools SNP 118316 118316 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43530 SAMTools SNP 118771 118771 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43530 SAMTools SNP 119182 119182 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C228:99 scaffold43530 SAMTools SNP 119185 119185 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.29%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C99:99 scaffold43530 SAMTools SNP 119255 119255 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.3%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C209:62 scaffold43530 SAMTools SNP 119718 119718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C6%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43530 SAMTools SNP 120505 120505 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43530 SAMTools SNP 120550 120550 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold43530 SAMTools SNP 120934 120934 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43530 SAMTools SNP 120967 120967 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.54%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold43530 SAMTools SNP 121275 121275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 121293 121293 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00085%2C0.4%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 126948 126948 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43530 SAMTools SNP 126950 126950 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43530 SAMTools SNP 126983 126983 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43530 SAMTools SNP 126994 126994 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43530 SAMTools SNP 127407 127407 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C66:69 scaffold43530 SAMTools SNP 127456 127456 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C8%2C20%2C2%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43530 SAMTools SNP 128169 128169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C9%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 128184 128184 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C54%2C1%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-10%2C1%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43530 SAMTools SNP 128237 128237 197 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C255%2C0%2C223%2C247%2C211:99 scaffold43530 SAMTools SNP 129094 129094 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43530 SAMTools SNP 129660 129660 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43530 SAMTools SNP 129768 129768 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43530 SAMTools SNP 130277 130277 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43536 SAMTools SNP 2450 2450 3.07 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:29%2C1%2C0:6 scaffold43536 SAMTools SNP 3099 3099 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43536 SAMTools SNP 3115 3115 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold43536 SAMTools SNP 3259 3259 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 6630 6630 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 10101 10101 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 10133 10133 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 11094 11094 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C14%2C23%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.00097%2C0.43%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold43536 SAMTools SNP 11117 11117 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C61%2C6%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.022%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43536 SAMTools SNP 11139 11139 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C40%2C0%2C12%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.056%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43536 SAMTools SNP 14386 14386 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.15%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43536 SAMTools SNP 14704 14704 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0064%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43536 SAMTools SNP 15359 15359 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43536 SAMTools SNP 15382 15382 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43536 SAMTools SNP 15564 15564 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold43536 SAMTools SNP 15576 15576 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold43536 SAMTools SNP 16135 16135 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.47%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43536 SAMTools SNP 16331 16331 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.5%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C221:71 scaffold43536 SAMTools SNP 16910 16910 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold43536 SAMTools SNP 17128 17128 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43536 SAMTools SNP 17579 17579 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43536 SAMTools SNP 18350 18350 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold43536 SAMTools SNP 18681 18681 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43536 SAMTools SNP 18716 18716 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.54%2C0.21%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43536 SAMTools SNP 18726 18726 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43536 SAMTools SNP 18783 18783 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold43536 SAMTools SNP 18789 18789 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C98:99 scaffold43536 SAMTools SNP 19159 19159 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C139:85 scaffold43536 SAMTools SNP 20063 20063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 20816 20816 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43536 SAMTools SNP 20819 20819 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold43536 SAMTools SNP 21290 21290 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold43536 SAMTools SNP 21814 21814 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43536 SAMTools SNP 21868 21868 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43536 SAMTools SNP 22425 22425 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.18%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold43536 SAMTools SNP 22434 22434 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43536 SAMTools SNP 22500 22500 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43536 SAMTools SNP 23304 23304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C7%2C224%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C5.5e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 26043 26043 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C137%2C1%2C249%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 26317 26317 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C23%2C0%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-12%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 26356 26356 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C12%2C32%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold43536 SAMTools SNP 26887 26887 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43536 SAMTools SNP 27003 27003 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C60%2C53%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C3.2e-14%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 27394 27394 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 27457 27457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C198%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 28249 28249 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 28688 28688 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C46%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold43536 SAMTools SNP 28730 28730 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43536 SAMTools SNP 28849 28849 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 28862 28862 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 29379 29379 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C111%2C57%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-19%2C2.7e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 29686 29686 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D918%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C814%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 29725 29725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D917%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C804%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 29765 29765 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C36%2C0:69 scaffold43536 SAMTools SNP 29786 29786 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43536 SAMTools SNP 29864 29864 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C51%2C3%2C60%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.025%2C9.1e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43536 SAMTools SNP 30902 30902 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C12%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43536 SAMTools SNP 30939 30939 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C9%3BMQ%3D50%3BFQ%3D-139;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C143:99 scaffold43536 SAMTools SNP 30963 30963 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C14%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold43536 SAMTools SNP 30978 30978 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43536 SAMTools SNP 31179 31179 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 31375 31375 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 31833 31833 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 31974 31974 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 32501 32501 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 32552 32552 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 33167 33167 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43536 SAMTools SNP 33185 33185 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 35418 35418 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43536 SAMTools SNP 38179 38179 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 38536 38536 30.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold43536 SAMTools SNP 43695 43695 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold43536 SAMTools SNP 57079 57079 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43536 SAMTools SNP 61140 61140 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C28%2C58%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.0034%2C0.056%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 61173 61173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C43%2C28%2C27%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.87%2C0.00076%2C0.06%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 61233 61233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 62588 62588 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C31%2C12%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 64140 64140 14.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43536 SAMTools SNP 65287 65287 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold43536 SAMTools SNP 65638 65638 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43536 SAMTools SNP 66071 66071 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C1%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43536 SAMTools SNP 66117 66117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 68270 68270 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.023%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43536 SAMTools SNP 68318 68318 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43536 SAMTools SNP 69269 69269 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C1%2C12%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43536 SAMTools SNP 70642 70642 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43536 SAMTools SNP 72207 72207 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43536 SAMTools SNP 72275 72275 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C48%2C0:93 scaffold43536 SAMTools SNP 72374 72374 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C60%2C0:99 scaffold43536 SAMTools SNP 91519 91519 50.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold43536 SAMTools SNP 103267 103267 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold43536 SAMTools SNP 103618 103618 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 103669 103669 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold43536 SAMTools SNP 104892 104892 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D38%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C105:99 scaffold43536 SAMTools SNP 104978 104978 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43536 SAMTools SNP 104984 104984 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43536 SAMTools SNP 105499 105499 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold43536 SAMTools SNP 105792 105792 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43536 SAMTools SNP 105813 105813 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43536 SAMTools SNP 112423 112423 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43536 SAMTools SNP 112466 112466 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43536 SAMTools SNP 115185 115185 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43536 SAMTools SNP 115209 115209 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 117631 117631 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C71:48 scaffold43536 SAMTools SNP 117667 117667 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43536 SAMTools SNP 118552 118552 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43536 SAMTools SNP 118558 118558 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43536 SAMTools SNP 118622 118622 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43536 SAMTools SNP 119339 119339 23.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold43536 SAMTools SNP 131938 131938 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 132528 132528 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold43536 SAMTools SNP 132791 132791 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43536 SAMTools SNP 135561 135561 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C111:71 scaffold43536 SAMTools SNP 140069 140069 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43536 SAMTools SNP 141586 141586 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 142638 142638 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 143505 143505 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 151857 151857 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 151874 151874 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43536 SAMTools SNP 151887 151887 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43536 SAMTools SNP 153051 153051 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 156793 156793 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 157218 157218 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 157957 157957 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43536 SAMTools SNP 158131 158131 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.25%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 158149 158149 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 158159 158159 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 158339 158339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 158894 158894 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C58%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 158909 158909 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C58%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 159244 159244 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 160133 160133 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C94%2C18%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 160291 160291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C102%2C11%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 160387 160387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C10%2C85%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C0.46%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 160420 160420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C40%2C75%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 161427 161427 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.3%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43536 SAMTools SNP 161921 161921 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0035%2C6e-07%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43536 SAMTools SNP 162159 162159 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C7.5e-108%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43536 SAMTools SNP 164618 164618 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C30%2C0:57 scaffold43536 SAMTools SNP 165839 165839 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 165857 165857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C28%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43536 SAMTools SNP 166252 166252 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43536 SAMTools SNP 166790 166790 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C68%2C0%2C52%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1.9e-05%2C5e-12%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold43536 SAMTools SNP 166807 166807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C224%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 167085 167085 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43536 SAMTools SNP 167321 167321 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 167691 167691 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 167724 167724 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43536 SAMTools SNP 168000 168000 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43536 SAMTools SNP 168296 168296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43536 SAMTools SNP 168412 168412 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C60%2C0:99 scaffold43536 SAMTools SNP 168719 168719 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43536 SAMTools SNP 168728 168728 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43536 SAMTools SNP 168968 168968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C19%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 169016 169016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 169226 169226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C44%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold43536 SAMTools SNP 169243 169243 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43536 SAMTools SNP 169455 169455 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43536 SAMTools SNP 169464 169464 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43536 SAMTools SNP 169485 169485 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.1%2C7.7e-31%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold43536 SAMTools SNP 169530 169530 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.67%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43536 SAMTools SNP 169534 169534 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43536 SAMTools SNP 169587 169587 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C5%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.41%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43536 SAMTools SNP 169593 169593 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C11%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.4%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold43536 SAMTools SNP 169790 169790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C13%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43536 SAMTools SNP 169966 169966 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C12%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 169996 169996 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 170199 170199 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43536 SAMTools SNP 170212 170212 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C75%2C0:99 scaffold43536 SAMTools SNP 170242 170242 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.25%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 171279 171279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C34%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43536 SAMTools SNP 171378 171378 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43536 SAMTools SNP 171399 171399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43536 SAMTools SNP 171811 171811 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 171989 171989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 172861 172861 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C28%2C10%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D2.6e-07%2C1.4e-08%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43536 SAMTools SNP 173390 173390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 174989 174989 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 175189 175189 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43536 SAMTools SNP 175381 175381 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43536 SAMTools SNP 175606 175606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold43536 SAMTools SNP 175784 175784 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 175871 175871 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C37%2C6%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.011%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43536 SAMTools SNP 176130 176130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C28%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 176343 176343 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 176399 176399 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43536 SAMTools SNP 176411 176411 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.095%2C0.019%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C217:99 scaffold43536 SAMTools SNP 176782 176782 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43536 SAMTools SNP 177033 177033 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C20%2C7%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.19%2C2.5e-23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43536 SAMTools SNP 177108 177108 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C36%2C0:69 scaffold43536 SAMTools SNP 177270 177270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 177312 177312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 177809 177809 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C19%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 178107 178107 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C47%2C39%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 178407 178407 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C85%2C2%2C63%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1.2e-15%2C4.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43536 SAMTools SNP 179198 179198 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C41%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold43536 SAMTools SNP 180620 180620 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.00089%2C1.2e-06%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43536 SAMTools SNP 180816 180816 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C12%2C10%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-12%2C2.2e-07%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 180831 180831 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C12%2C10%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-12%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 181100 181100 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43536 SAMTools SNP 181106 181106 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C24%2C0:45 scaffold43536 SAMTools SNP 181190 181190 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43536 SAMTools SNP 181223 181223 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C20%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 181595 181595 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C13%2C52%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-06%2C0.31%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 182394 182394 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C218:36 scaffold43536 SAMTools SNP 182446 182446 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 182497 182497 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold43536 SAMTools SNP 184843 184843 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 184864 184864 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.077%2C0.4%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43536 SAMTools SNP 184885 184885 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C13%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43536 SAMTools SNP 185917 185917 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C10%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold43536 SAMTools SNP 185989 185989 41.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold43536 SAMTools SNP 185992 185992 46.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold43536 SAMTools SNP 186253 186253 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C0%2C64%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 187855 187855 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold43536 SAMTools SNP 188217 188217 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C33%2C2%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.31%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold43536 SAMTools SNP 188298 188298 50.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold43536 SAMTools SNP 188304 188304 42.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43536 SAMTools SNP 188443 188443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43536 SAMTools SNP 188448 188448 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43536 SAMTools SNP 188679 188679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 188817 188817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C23%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 188843 188843 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 188846 188846 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43536 SAMTools SNP 189280 189280 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C50%2C30%2C69%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.018%2C2e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43536 SAMTools SNP 189850 189850 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C11%2C31%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.22%2C3.6e-33%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43536 SAMTools SNP 189874 189874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43536 SAMTools SNP 189955 189955 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold43536 SAMTools SNP 191504 191504 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C21%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.29%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 191947 191947 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C76%2C14%2C7%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.036%2C0.15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43536 SAMTools SNP 191971 191971 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C13%2C4%2C10%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0038%2C1%2C0.03%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43536 SAMTools SNP 192004 192004 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C24%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C0.41%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 192715 192715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C49%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43536 SAMTools SNP 193085 193085 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43536 SAMTools SNP 193091 193091 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43536 SAMTools SNP 193118 193118 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 193151 193151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43536 SAMTools SNP 193840 193840 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43536 SAMTools SNP 194149 194149 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.15%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43536 SAMTools SNP 194158 194158 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C0.11%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43536 SAMTools SNP 194170 194170 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43536 SAMTools SNP 194224 194224 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0021%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43536 SAMTools SNP 194227 194227 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 195417 195417 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C10%2C53%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.2e-05%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 195465 195465 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C161%2C5%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 195516 195516 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C179%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 196297 196297 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C29%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43536 SAMTools SNP 196330 196330 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C23%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.21%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold43536 SAMTools SNP 196441 196441 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 196525 196525 160 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C5%2C24%3BMQ%3D42%3BFQ%3D-64%3BPV4%3D0.00091%2C0.022%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C62%2C231%2C0%2C225:71 scaffold43536 SAMTools SNP 202282 202282 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C25%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1.2e-07%2C1.6e-27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C233:99 scaffold43536 SAMTools SNP 202839 202839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 203893 203893 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43536 SAMTools SNP 204713 204713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C367%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43536 SAMTools SNP 208705 208705 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D800%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C414%2C64%2C258%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C5.1e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43536 SAMTools SNP 208807 208807 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C2%2C34%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.58%2C4.2e-74%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43536 SAMTools SNP 216824 216824 17.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold43536 SAMTools SNP 218657 218657 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43536 SAMTools SNP 226597 226597 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.46%2C1%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C230:31 scaffold43536 SAMTools SNP 245798 245798 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43536 SAMTools SNP 245993 245993 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold43536 SAMTools SNP 267138 267138 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43536 SAMTools SNP 271149 271149 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0027%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold43538 SAMTools SNP 783 783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 841 841 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 890 890 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 45990 45990 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 65932 65932 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43538 SAMTools SNP 75802 75802 212 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C1%2C62%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43538 SAMTools SNP 75880 75880 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C47%2C2%2C26%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.017%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43538 SAMTools SNP 76658 76658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 77386 77386 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43538 SAMTools SNP 98948 98948 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43538 SAMTools SNP 101165 101165 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C38:41 scaffold43538 SAMTools SNP 118203 118203 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.045%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43538 SAMTools SNP 118449 118449 14.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43538 SAMTools SNP 120790 120790 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 122090 122090 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43538 SAMTools SNP 122111 122111 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold43538 SAMTools SNP 129195 129195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43538 SAMTools SNP 129250 129250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43538 SAMTools SNP 129278 129278 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43538 SAMTools SNP 130752 130752 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 130975 130975 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00068%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43538 SAMTools SNP 131852 131852 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C6%2C31%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.75%2C0.2%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 132179 132179 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0021%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43538 SAMTools SNP 132515 132515 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.095%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43538 SAMTools SNP 132983 132983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43538 SAMTools SNP 133078 133078 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 135010 135010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 135086 135086 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.56%2C0.00021%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43538 SAMTools SNP 135865 135865 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C11%2C18%3BMQ%3D38%3BFQ%3D137%3BPV4%3D0.24%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold43538 SAMTools SNP 136623 136623 79.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D33%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C17:20 scaffold43538 SAMTools SNP 137970 137970 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43538 SAMTools SNP 137972 137972 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43538 SAMTools SNP 138012 138012 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.055%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43538 SAMTools SNP 138026 138026 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43538 SAMTools SNP 138214 138214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43538 SAMTools SNP 138217 138217 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43538 SAMTools SNP 138223 138223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.019%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold43538 SAMTools SNP 138300 138300 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C0:57 scaffold43538 SAMTools SNP 138403 138403 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43538 SAMTools SNP 138444 138444 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold43538 SAMTools SNP 140243 140243 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.42%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43538 SAMTools SNP 147347 147347 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold43538 SAMTools SNP 147744 147744 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43538 SAMTools SNP 147832 147832 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C184:66 scaffold43538 SAMTools SNP 149310 149310 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.32%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold43538 SAMTools SNP 149334 149334 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 149336 149336 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43538 SAMTools SNP 149603 149603 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C232:99 scaffold43538 SAMTools SNP 150663 150663 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.00015%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold43538 SAMTools SNP 151034 151034 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43538 SAMTools SNP 151079 151079 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 153857 153857 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 153868 153868 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43538 SAMTools SNP 154338 154338 44.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold43538 SAMTools SNP 154431 154431 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43538 SAMTools SNP 157486 157486 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold43538 SAMTools SNP 157501 157501 79.3 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C30%2C15%2C104%2C0%2C101:27 scaffold43538 SAMTools SNP 157893 157893 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43538 SAMTools SNP 158735 158735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43538 SAMTools SNP 158737 158737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43538 SAMTools SNP 160495 160495 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C26%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43538 SAMTools SNP 160581 160581 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C36%2C0:69 scaffold43538 SAMTools SNP 163739 163739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43538 SAMTools SNP 164282 164282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43538 SAMTools SNP 174014 174014 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43538 SAMTools SNP 174034 174034 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43538 SAMTools SNP 174056 174056 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 174075 174075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43538 SAMTools SNP 175482 175482 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43538 SAMTools SNP 184531 184531 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43538 SAMTools SNP 184553 184553 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43538 SAMTools SNP 266264 266264 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43552 SAMTools SNP 22012 22012 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43552 SAMTools SNP 22031 22031 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43552 SAMTools SNP 22034 22034 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43552 SAMTools SNP 132289 132289 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43552 SAMTools SNP 132472 132472 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43552 SAMTools SNP 132519 132519 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43552 SAMTools SNP 132642 132642 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold43552 SAMTools SNP 132746 132746 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43552 SAMTools SNP 132898 132898 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43552 SAMTools SNP 132922 132922 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43552 SAMTools SNP 193945 193945 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold43552 SAMTools SNP 219934 219934 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.077%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C124:52 scaffold43552 SAMTools SNP 230668 230668 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.99%3BPV4%3D1%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C26:29 scaffold43552 SAMTools SNP 233377 233377 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D787%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C392%2C18%2C281%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.059%2C5.6e-266%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43552 SAMTools SNP 233895 233895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C35%2C24%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 233965 233965 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.04%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C63:66 scaffold43552 SAMTools SNP 234036 234036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C32%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold43552 SAMTools SNP 234548 234548 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C6%2C27%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43552 SAMTools SNP 234563 234563 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C2%2C47%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 235212 235212 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C123%2C100%2C169%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 235275 235275 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C113%2C98%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C9.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 235281 235281 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C150%2C4%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-09%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 235299 235299 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43552 SAMTools SNP 235658 235658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C33%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43552 SAMTools SNP 235682 235682 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43552 SAMTools SNP 235688 235688 145 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C12:15 scaffold43552 SAMTools SNP 235751 235751 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C14%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.00042%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43552 SAMTools SNP 236758 236758 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C252%2C150%2C157%3BMQ%3D50%3BFQ%3D83%3BPV4%3D4.5e-40%2C0%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43552 SAMTools SNP 236785 236785 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D547%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D0.4%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold43552 SAMTools SNP 236827 236827 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C428%2C136%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.6%2C2.4e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43552 SAMTools SNP 236863 236863 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D584%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C427%2C156%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.27%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43552 SAMTools SNP 237777 237777 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C458%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43552 SAMTools SNP 237843 237843 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.27%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold43552 SAMTools SNP 237860 237860 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C45%2C0:87 scaffold43552 SAMTools SNP 274204 274204 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43562 SAMTools SNP 949 949 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43562 SAMTools SNP 1539 1539 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C12%3BMQ%3D39%3BFQ%3D8.47%3BPV4%3D1%2C0.099%2C0.12%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C48:36 scaffold43562 SAMTools SNP 4782 4782 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C4.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C209:69 scaffold43562 SAMTools SNP 5089 5089 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C13%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0042%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43562 SAMTools SNP 5244 5244 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43562 SAMTools SNP 5405 5405 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43562 SAMTools SNP 5463 5463 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43562 SAMTools SNP 5839 5839 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43562 SAMTools SNP 5893 5893 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C2%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.7e-17%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 5900 5900 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C2%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.29%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold43562 SAMTools SNP 6166 6166 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold43562 SAMTools SNP 6173 6173 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.52%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C221:55 scaffold43562 SAMTools SNP 6185 6185 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold43562 SAMTools SNP 6220 6220 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43562 SAMTools SNP 6412 6412 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43562 SAMTools SNP 6497 6497 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D49%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C226:99 scaffold43562 SAMTools SNP 6562 6562 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C4%2C2%3BMQ%3D49%3BFQ%3D121%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43562 SAMTools SNP 6565 6565 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C5%2C0%3BMQ%3D49%3BFQ%3D55%3BPV4%3D0.29%2C0.00059%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43562 SAMTools SNP 7077 7077 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold43562 SAMTools SNP 7157 7157 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43562 SAMTools SNP 7166 7166 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43562 SAMTools SNP 7484 7484 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold43562 SAMTools SNP 7813 7813 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 7864 7864 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 7942 7942 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold43562 SAMTools SNP 8182 8182 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D54%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43562 SAMTools SNP 8194 8194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43562 SAMTools SNP 8568 8568 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C62%2C6%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.00067%2C0.0066%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43562 SAMTools SNP 8654 8654 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43562 SAMTools SNP 8677 8677 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43562 SAMTools SNP 8915 8915 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 8932 8932 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C2.9e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C29:32 scaffold43562 SAMTools SNP 8965 8965 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 10042 10042 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43562 SAMTools SNP 10763 10763 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold43562 SAMTools SNP 10780 10780 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold43562 SAMTools SNP 10787 10787 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43562 SAMTools SNP 10808 10808 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43562 SAMTools SNP 10883 10883 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43562 SAMTools SNP 10889 10889 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.39%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold43562 SAMTools SNP 12143 12143 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 12192 12192 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C71:74 scaffold43562 SAMTools SNP 12219 12219 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C221:69 scaffold43562 SAMTools SNP 12270 12270 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C113:99 scaffold43562 SAMTools SNP 12642 12642 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43562 SAMTools SNP 12693 12693 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43562 SAMTools SNP 12897 12897 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43562 SAMTools SNP 12958 12958 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold43562 SAMTools SNP 13020 13020 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D47%3BFQ%3D93.8%3BPV4%3D0.43%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C121:99 scaffold43562 SAMTools SNP 13177 13177 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D47%3BFQ%3D17.1%3BPV4%3D1%2C0.03%2C0.11%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C196:47 scaffold43562 SAMTools SNP 13246 13246 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43562 SAMTools SNP 13621 13621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43562 SAMTools SNP 13738 13738 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C58%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43562 SAMTools SNP 14613 14613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43562 SAMTools SNP 15048 15048 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C51%2C0:99 scaffold43562 SAMTools SNP 15070 15070 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43562 SAMTools SNP 15461 15461 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43562 SAMTools SNP 15873 15873 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43562 SAMTools SNP 16111 16111 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43562 SAMTools SNP 16773 16773 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold43562 SAMTools SNP 16873 16873 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold43562 SAMTools SNP 17578 17578 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0036%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43562 SAMTools SNP 17765 17765 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C72%2C0%2C18%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C222:75 scaffold43562 SAMTools SNP 17884 17884 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43562 SAMTools SNP 18406 18406 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.051%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C104:99 scaffold43562 SAMTools SNP 18411 18411 68.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold43562 SAMTools SNP 20050 20050 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43562 SAMTools SNP 20105 20105 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43562 SAMTools SNP 20394 20394 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold43562 SAMTools SNP 21608 21608 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43562 SAMTools SNP 21643 21643 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C251:99 scaffold43562 SAMTools SNP 22211 22211 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43562 SAMTools SNP 22281 22281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43562 SAMTools SNP 23150 23150 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C24%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D4.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43562 SAMTools SNP 23227 23227 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43562 SAMTools SNP 23605 23605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43562 SAMTools SNP 23910 23910 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C48%2C0:93 scaffold43562 SAMTools SNP 24203 24203 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43562 SAMTools SNP 24216 24216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43562 SAMTools SNP 24481 24481 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C38%2C25%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43562 SAMTools SNP 24539 24539 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C25%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C3.3e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 24545 24545 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C5%2C32%2C38%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.22%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold43562 SAMTools SNP 24575 24575 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C5%2C25%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.014%2C1.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43562 SAMTools SNP 24637 24637 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 24991 24991 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.28%2C1%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43562 SAMTools SNP 25038 25038 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43562 SAMTools SNP 25412 25412 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.38%2C4.8e-32%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C244:75 scaffold43562 SAMTools SNP 25847 25847 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C4e-09%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43562 SAMTools SNP 25858 25858 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.33%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C154:99 scaffold43562 SAMTools SNP 26117 26117 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.66%2C0.051%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold43562 SAMTools SNP 26156 26156 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.42%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 26268 26268 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43562 SAMTools SNP 26272 26272 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.26%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43562 SAMTools SNP 26295 26295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C10%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold43562 SAMTools SNP 27080 27080 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43562 SAMTools SNP 27310 27310 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43562 SAMTools SNP 27349 27349 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.099%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C85:88 scaffold43562 SAMTools SNP 27358 27358 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0065%2C0.014%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C215:99 scaffold43562 SAMTools SNP 27364 27364 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C0.19%2C1%2C2.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold43562 SAMTools SNP 28451 28451 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C0.05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 28514 28514 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43562 SAMTools SNP 28860 28860 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C23%2C44%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 28999 28999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C39%2C41%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 29667 29667 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.42%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43562 SAMTools SNP 29682 29682 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.13%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43562 SAMTools SNP 30159 30159 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43562 SAMTools SNP 31738 31738 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.092%2C0.041%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43562 SAMTools SNP 31755 31755 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold43562 SAMTools SNP 32218 32218 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43562 SAMTools SNP 32805 32805 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C6%3BMQ%3D49%3BFQ%3D27%3BPV4%3D0.018%2C5.9e-07%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43562 SAMTools SNP 33366 33366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43562 SAMTools SNP 35050 35050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D43%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43562 SAMTools SNP 35071 35071 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D42%3BFQ%3D110%3BPV4%3D0.24%2C0.00031%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C185:99 scaffold43562 SAMTools SNP 35102 35102 88.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold43562 SAMTools SNP 35351 35351 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43562 SAMTools SNP 35680 35680 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43562 SAMTools SNP 36136 36136 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C8%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43562 SAMTools SNP 36190 36190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43562 SAMTools SNP 36220 36220 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C42%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43562 SAMTools SNP 36578 36578 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C51%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43562 SAMTools SNP 36614 36614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43562 SAMTools SNP 37319 37319 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C10%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C236:99 scaffold43562 SAMTools SNP 37343 37343 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C224:65 scaffold43562 SAMTools SNP 37391 37391 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43562 SAMTools SNP 37799 37799 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43562 SAMTools SNP 37820 37820 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 37863 37863 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 38897 38897 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43562 SAMTools SNP 38912 38912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C3%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43562 SAMTools SNP 39041 39041 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 40638 40638 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.54%2C7.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43562 SAMTools SNP 40989 40989 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43562 SAMTools SNP 40993 40993 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43562 SAMTools SNP 41060 41060 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43562 SAMTools SNP 41090 41090 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C1%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.66%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43562 SAMTools SNP 41254 41254 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C3%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.026%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43562 SAMTools SNP 41339 41339 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43562 SAMTools SNP 41784 41784 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.61%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43562 SAMTools SNP 41792 41792 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.051%2C1.2e-05%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43562 SAMTools SNP 41814 41814 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.5%2C0.06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43562 SAMTools SNP 42344 42344 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.56%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43562 SAMTools SNP 42470 42470 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43562 SAMTools SNP 43348 43348 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.00028%2C1%2C5.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43562 SAMTools SNP 43884 43884 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 43916 43916 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43562 SAMTools SNP 44250 44250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43562 SAMTools SNP 44284 44284 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43562 SAMTools SNP 44348 44348 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43562 SAMTools SNP 44671 44671 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43562 SAMTools SNP 45018 45018 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43562 SAMTools SNP 45030 45030 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 45045 45045 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43562 SAMTools SNP 45291 45291 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43562 SAMTools SNP 45312 45312 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 45761 45761 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C9%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.02%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43562 SAMTools SNP 46041 46041 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold43562 SAMTools SNP 46081 46081 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43562 SAMTools SNP 46730 46730 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43562 SAMTools SNP 47702 47702 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 47717 47717 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 48270 48270 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43562 SAMTools SNP 48277 48277 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D2%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C9:12 scaffold43562 SAMTools SNP 48372 48372 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C5%2C29%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.42%2C3.9e-75%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43562 SAMTools SNP 48429 48429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 48761 48761 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C7%2C24%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 48881 48881 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C23%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C253:99 scaffold43562 SAMTools SNP 49228 49228 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43562 SAMTools SNP 49233 49233 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 49323 49323 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 49326 49326 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43562 SAMTools SNP 49749 49749 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43562 SAMTools SNP 49767 49767 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 49832 49832 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C134:72 scaffold43562 SAMTools SNP 50998 50998 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C46%2C6%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-12%2C1%2C1%2C3e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 51022 51022 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C19%2C6%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.07%2C0.0027%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43562 SAMTools SNP 51360 51360 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 51950 51950 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C32%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 52169 52169 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C24%2C0:45 scaffold43562 SAMTools SNP 54651 54651 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C17%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43562 SAMTools SNP 54990 54990 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C0.48%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43562 SAMTools SNP 56164 56164 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43562 SAMTools SNP 56176 56176 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.33%2C0.35%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43562 SAMTools SNP 56197 56197 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43562 SAMTools SNP 56679 56679 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.53%2C0.0078%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43562 SAMTools SNP 57238 57238 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C70%2C0%2C21%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.021%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43562 SAMTools SNP 57258 57258 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C15%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 57817 57817 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43562 SAMTools SNP 80273 80273 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.28%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43562 SAMTools SNP 81802 81802 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.45%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C201:65 scaffold43562 SAMTools SNP 82231 82231 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C18%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C2.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold43562 SAMTools SNP 82489 82489 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C7%2C22%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.3e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43562 SAMTools SNP 83970 83970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C18%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43562 SAMTools SNP 84000 84000 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 85483 85483 74.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C15%2C0:27 scaffold43562 SAMTools SNP 85495 85495 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C27%2C0:51 scaffold43562 SAMTools SNP 85516 85516 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0023%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C140:46 scaffold43562 SAMTools SNP 85597 85597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43562 SAMTools SNP 86292 86292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.61%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold43562 SAMTools SNP 86558 86558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.15%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 86570 86570 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold43562 SAMTools SNP 86841 86841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43562 SAMTools SNP 90263 90263 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold43562 SAMTools SNP 92544 92544 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 92613 92613 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43562 SAMTools SNP 92616 92616 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43562 SAMTools SNP 92635 92635 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43562 SAMTools SNP 95410 95410 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C15%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.23%2C0.39%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold43562 SAMTools SNP 95418 95418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43562 SAMTools SNP 96216 96216 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.52%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43562 SAMTools SNP 96425 96425 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C250:99 scaffold43562 SAMTools SNP 98211 98211 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43562 SAMTools SNP 98221 98221 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.22%2C1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43562 SAMTools SNP 98298 98298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43562 SAMTools SNP 98317 98317 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43562 SAMTools SNP 101080 101080 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43562 SAMTools SNP 101083 101083 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43562 SAMTools SNP 101513 101513 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold43562 SAMTools SNP 102114 102114 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.16%2C0.16%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43562 SAMTools SNP 102126 102126 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C0.0073%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43562 SAMTools SNP 102382 102382 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 103342 103342 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold43562 SAMTools SNP 103366 103366 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C234:99 scaffold43562 SAMTools SNP 104780 104780 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C1.9e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold43562 SAMTools SNP 104806 104806 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.24%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43562 SAMTools SNP 104820 104820 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43562 SAMTools SNP 111007 111007 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43562 SAMTools SNP 131687 131687 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 131899 131899 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43562 SAMTools SNP 131900 131900 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43562 SAMTools SNP 134961 134961 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold43562 SAMTools SNP 135108 135108 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.45%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43562 SAMTools SNP 135243 135243 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43562 SAMTools SNP 135275 135275 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43562 SAMTools SNP 140232 140232 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 140748 140748 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 140809 140809 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 141238 141238 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 141288 141288 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 145214 145214 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43562 SAMTools SNP 148422 148422 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold43562 SAMTools SNP 148438 148438 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43562 SAMTools SNP 148460 148460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43562 SAMTools SNP 149015 149015 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D0.43%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C77:62 scaffold43562 SAMTools SNP 157079 157079 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 157128 157128 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 159075 159075 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.019%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43562 SAMTools SNP 159631 159631 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43562 SAMTools SNP 160342 160342 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 160353 160353 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 166700 166700 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C238:99 scaffold43562 SAMTools SNP 170564 170564 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C42%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 170572 170572 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C16%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 171253 171253 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C16%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 171320 171320 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C25%2C6%2C6%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43562 SAMTools SNP 171444 171444 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43562 SAMTools SNP 171982 171982 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold43562 SAMTools SNP 175032 175032 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.28%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43562 SAMTools SNP 175039 175039 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43562 SAMTools SNP 175062 175062 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 175137 175137 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C10%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43562 SAMTools SNP 176344 176344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43562 SAMTools SNP 179148 179148 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 179297 179297 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43562 SAMTools SNP 184040 184040 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.033%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43562 SAMTools SNP 202276 202276 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C39%2C0:75 scaffold43562 SAMTools SNP 202360 202360 129 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.038%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43562 SAMTools SNP 202431 202431 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C10%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C0.12%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold43562 SAMTools SNP 202961 202961 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43562 SAMTools SNP 203137 203137 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43562 SAMTools SNP 203171 203171 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43562 SAMTools SNP 206484 206484 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43562 SAMTools SNP 206487 206487 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43562 SAMTools SNP 208497 208497 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43562 SAMTools SNP 208633 208633 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 208822 208822 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43562 SAMTools SNP 208828 208828 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43562 SAMTools SNP 209300 209300 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43562 SAMTools SNP 211052 211052 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 211532 211532 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43562 SAMTools SNP 212813 212813 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43562 SAMTools SNP 212816 212816 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C22:25 scaffold43562 SAMTools SNP 220822 220822 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43562 SAMTools SNP 220851 220851 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43562 SAMTools SNP 230332 230332 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.43%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C163:63 scaffold43562 SAMTools SNP 232304 232304 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.0012%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43562 SAMTools SNP 233006 233006 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 233024 233024 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 233582 233582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C48%2C29%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C2.9e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 233889 233889 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C8%2C57%2C28%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00064%2C7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43562 SAMTools SNP 233999 233999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43562 SAMTools SNP 234216 234216 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C29%2C39%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.15%2C1%2C7.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 234231 234231 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C41%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43562 SAMTools SNP 234590 234590 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C36%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 234813 234813 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C43%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 234913 234913 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C60%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C226%2C0:99 scaffold43562 SAMTools SNP 234978 234978 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43562 SAMTools SNP 235021 235021 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43562 SAMTools SNP 236831 236831 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C4%2C28%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43562 SAMTools SNP 237609 237609 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43562 SAMTools SNP 252387 252387 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43562 SAMTools SNP 274271 274271 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.057%2C0.047%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold43562 SAMTools SNP 278173 278173 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43562 SAMTools SNP 278200 278200 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43574 SAMTools SNP 72 72 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43574 SAMTools SNP 411 411 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43574 SAMTools SNP 456 456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C12%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 477 477 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C22%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.045%2C0.21%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 896 896 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43574 SAMTools SNP 1812 1812 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C165%2C7%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 2163 2163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 27971 27971 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43574 SAMTools SNP 27988 27988 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43574 SAMTools SNP 27991 27991 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43574 SAMTools SNP 38407 38407 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 46897 46897 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 46977 46977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 53730 53730 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 55361 55361 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C24:27 scaffold43574 SAMTools SNP 59003 59003 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C88:28 scaffold43574 SAMTools SNP 60289 60289 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C165:46 scaffold43574 SAMTools SNP 60358 60358 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold43574 SAMTools SNP 60379 60379 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C208:33 scaffold43574 SAMTools SNP 60436 60436 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.58%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C212:99 scaffold43574 SAMTools SNP 60572 60572 166 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C47%2C32%2C191%2C0%2C188:27 scaffold43574 SAMTools SNP 60863 60863 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 63422 63422 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 63705 63705 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 63716 63716 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C3%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.66%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43574 SAMTools SNP 63744 63744 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 63977 63977 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43574 SAMTools SNP 65306 65306 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43574 SAMTools SNP 65357 65357 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C219%2C195:43 scaffold43574 SAMTools SNP 65810 65810 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43574 SAMTools SNP 66452 66452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43574 SAMTools SNP 69991 69991 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C154:99 scaffold43574 SAMTools SNP 70010 70010 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C190:99 scaffold43574 SAMTools SNP 70121 70121 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43574 SAMTools SNP 70896 70896 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C8%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.36%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold43574 SAMTools SNP 71514 71514 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C6%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43574 SAMTools SNP 71539 71539 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43574 SAMTools SNP 71880 71880 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43574 SAMTools SNP 72456 72456 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43574 SAMTools SNP 72483 72483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 72558 72558 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.43%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C160:99 scaffold43574 SAMTools SNP 72832 72832 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C27%2C0:51 scaffold43574 SAMTools SNP 72840 72840 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43574 SAMTools SNP 73087 73087 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43574 SAMTools SNP 73165 73165 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43574 SAMTools SNP 75567 75567 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43574 SAMTools SNP 75582 75582 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 85555 85555 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43574 SAMTools SNP 89738 89738 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43574 SAMTools SNP 89986 89986 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold43574 SAMTools SNP 94107 94107 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43574 SAMTools SNP 104318 104318 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D988%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C278%2C137%2C221%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 104574 104574 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D970%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D395%2C73%2C420%2C63%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.27%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43574 SAMTools SNP 104709 104709 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43574 SAMTools SNP 106436 106436 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C22%2C45%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.18%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 107298 107298 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C62%2C187%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.011%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 111859 111859 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43574 SAMTools SNP 112790 112790 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 112808 112808 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43574 SAMTools SNP 112959 112959 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C113:99 scaffold43574 SAMTools SNP 112964 112964 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold43574 SAMTools SNP 113874 113874 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold43574 SAMTools SNP 115174 115174 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43574 SAMTools SNP 115786 115786 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 120007 120007 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C69:46 scaffold43574 SAMTools SNP 126380 126380 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C13%2C1%3BMQ%3D28%3BFQ%3D-36%3BPV4%3D1%2C0.43%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C9%2C0:16 scaffold43574 SAMTools SNP 128289 128289 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43574 SAMTools SNP 128324 128324 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43574 SAMTools SNP 133419 133419 84.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C14:17 scaffold43574 SAMTools SNP 134028 134028 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 135461 135461 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43574 SAMTools SNP 138704 138704 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.33%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C227:99 scaffold43574 SAMTools SNP 139252 139252 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43574 SAMTools SNP 139270 139270 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43574 SAMTools SNP 143434 143434 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43574 SAMTools SNP 143650 143650 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43574 SAMTools SNP 146119 146119 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43574 SAMTools SNP 146122 146122 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0058%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 146164 146164 14.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43574 SAMTools SNP 146212 146212 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 146215 146215 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43574 SAMTools SNP 148459 148459 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 148473 148473 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 149955 149955 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0024%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43574 SAMTools SNP 150529 150529 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43574 SAMTools SNP 150830 150830 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold43574 SAMTools SNP 154226 154226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D922%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C137%2C305%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 154394 154394 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1148%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C515%2C2%2C619%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.5%2C0%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold43574 SAMTools SNP 157263 157263 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C30%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.68%2C2.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43574 SAMTools SNP 157347 157347 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C2%2C16%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.013%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43574 SAMTools SNP 157566 157566 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C35%2C1%2C15%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0071%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43574 SAMTools SNP 158579 158579 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.018%2C1.5e-14%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C142:99 scaffold43574 SAMTools SNP 158828 158828 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C132%2C0:99 scaffold43574 SAMTools SNP 158843 158843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C32%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.23%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold43574 SAMTools SNP 160313 160313 14.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C18%2C0:28 scaffold43574 SAMTools SNP 163386 163386 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43574 SAMTools SNP 163398 163398 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold43574 SAMTools SNP 163624 163624 37.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold43574 SAMTools SNP 164438 164438 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0018%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold43574 SAMTools SNP 164450 164450 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.012%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43574 SAMTools SNP 164883 164883 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.31%2C0.1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43574 SAMTools SNP 164912 164912 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00037%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C167:47 scaffold43574 SAMTools SNP 165146 165146 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C129:99 scaffold43574 SAMTools SNP 165291 165291 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C168%2C141:51 scaffold43574 SAMTools SNP 165621 165621 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.083%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C77:80 scaffold43574 SAMTools SNP 165658 165658 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.7e-05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold43574 SAMTools SNP 166267 166267 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 166426 166426 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43574 SAMTools SNP 166441 166441 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43574 SAMTools SNP 166740 166740 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 166798 166798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 166819 166819 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43574 SAMTools SNP 166822 166822 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43574 SAMTools SNP 167236 167236 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43574 SAMTools SNP 167240 167240 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C80:75 scaffold43574 SAMTools SNP 167588 167588 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43574 SAMTools SNP 168179 168179 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold43574 SAMTools SNP 168339 168339 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold43574 SAMTools SNP 170354 170354 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 171217 171217 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43574 SAMTools SNP 171301 171301 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43574 SAMTools SNP 171564 171564 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C71:74 scaffold43574 SAMTools SNP 173110 173110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43574 SAMTools SNP 173147 173147 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43574 SAMTools SNP 173149 173149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold43574 SAMTools SNP 173603 173603 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C9%3BMQ%3D46%3BFQ%3D107%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold43574 SAMTools SNP 173629 173629 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C4%3BMQ%3D46%3BFQ%3D80%3BPV4%3D1%2C0.13%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43574 SAMTools SNP 174237 174237 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 174294 174294 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43574 SAMTools SNP 176404 176404 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold43574 SAMTools SNP 177185 177185 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43574 SAMTools SNP 179832 179832 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C3%2C15%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.37%2C1.8e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43574 SAMTools SNP 179881 179881 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C75%2C0:99 scaffold43574 SAMTools SNP 180273 180273 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C43%2C4%2C6%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43574 SAMTools SNP 184192 184192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C301%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 184687 184687 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43574 SAMTools SNP 185203 185203 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C0%2C31%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.5%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43574 SAMTools SNP 185292 185292 13.9 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43574 SAMTools SNP 189421 189421 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.1e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C225:39 scaffold43574 SAMTools SNP 189433 189433 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C22%2C7%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.0081%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C84:87 scaffold43574 SAMTools SNP 189442 189442 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.037%2C2.3e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43574 SAMTools SNP 189799 189799 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold43574 SAMTools SNP 189814 189814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43574 SAMTools SNP 190501 190501 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C25%2C87%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 190799 190799 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C265%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 191308 191308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C35%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43574 SAMTools SNP 191329 191329 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 192632 192632 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C130%2C35%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C0.012%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 192934 192934 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D623%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C358%2C31%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 192955 192955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D622%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C350%2C35%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 193361 193361 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 194954 194954 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C6%2C6%2C89%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43574 SAMTools SNP 195025 195025 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0125%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D20%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.27%2C0.0039%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43574 SAMTools SNP 195318 195318 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C62%2C8%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 195967 195967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C63%2C32%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.18%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 196760 196760 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C159%2C21%2C95%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.41%2C8.3e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43574 SAMTools SNP 197107 197107 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D0.027%2C1%2C1%2C1.2e-23;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C84%2C0:99 scaffold43574 SAMTools SNP 197838 197838 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C17%2C18%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.092%2C6.3e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold43574 SAMTools SNP 198284 198284 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold43574 SAMTools SNP 198434 198434 30.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0417%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.14%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C9:12 scaffold43574 SAMTools SNP 198475 198475 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C255%2C0:99 scaffold43574 SAMTools SNP 201075 201075 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold43574 SAMTools SNP 202154 202154 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.33%2C1.9e-17%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43574 SAMTools SNP 202619 202619 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C12%2C5%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.42%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43574 SAMTools SNP 202635 202635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C15%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43574 SAMTools SNP 202650 202650 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C25%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 205520 205520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 206807 206807 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C21:24 scaffold43574 SAMTools SNP 207681 207681 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43574 SAMTools SNP 207689 207689 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 207833 207833 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43574 SAMTools SNP 207874 207874 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43574 SAMTools SNP 207932 207932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 208471 208471 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C105%2C0:99 scaffold43574 SAMTools SNP 208846 208846 25.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold43574 SAMTools SNP 208882 208882 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold43574 SAMTools SNP 209050 209050 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C11%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.64%2C2.3e-14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43574 SAMTools SNP 209185 209185 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C2%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C226%2C0:99 scaffold43574 SAMTools SNP 209194 209194 14.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43574 SAMTools SNP 209203 209203 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold43574 SAMTools SNP 209209 209209 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0048%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C229:28 scaffold43574 SAMTools SNP 210324 210324 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C0%2C73%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D3.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C18%2C0:33 scaffold43574 SAMTools SNP 210402 210402 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43574 SAMTools SNP 210420 210420 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold43574 SAMTools SNP 210429 210429 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43574 SAMTools SNP 211406 211406 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 211411 211411 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 211971 211971 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C33%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.086%2C7.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43574 SAMTools SNP 212178 212178 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C35%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 213560 213560 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 214824 214824 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold43574 SAMTools SNP 219954 219954 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43574 SAMTools SNP 222757 222757 58.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold43574 SAMTools SNP 227369 227369 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43574 SAMTools SNP 230623 230623 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 231406 231406 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43574 SAMTools SNP 231419 231419 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43574 SAMTools SNP 231491 231491 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C10%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0016%2C1.7e-07%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43574 SAMTools SNP 231538 231538 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43574 SAMTools SNP 231895 231895 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43574 SAMTools SNP 232371 232371 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C38:41 scaffold43574 SAMTools SNP 232406 232406 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43574 SAMTools SNP 232831 232831 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.62%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43574 SAMTools SNP 232845 232845 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 233401 233401 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C156:99 scaffold43574 SAMTools SNP 234173 234173 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C214:99 scaffold43574 SAMTools SNP 234233 234233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.66%2C0.33%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold43574 SAMTools SNP 234595 234595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43574 SAMTools SNP 234639 234639 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43574 SAMTools SNP 234898 234898 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C16%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43574 SAMTools SNP 235190 235190 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43574 SAMTools SNP 235212 235212 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.42%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43574 SAMTools SNP 235468 235468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C13%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43574 SAMTools SNP 236115 236115 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C30%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43574 SAMTools SNP 236154 236154 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C12%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.3%2C3.7e-07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold43574 SAMTools SNP 236224 236224 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43574 SAMTools SNP 236458 236458 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold43574 SAMTools SNP 236469 236469 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43574 SAMTools SNP 237398 237398 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 237413 237413 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 237873 237873 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43574 SAMTools SNP 237912 237912 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 237945 237945 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43574 SAMTools SNP 238240 238240 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 239741 239741 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 239772 239772 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.044%2C3.1e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43574 SAMTools SNP 239835 239835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43574 SAMTools SNP 240132 240132 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43574 SAMTools SNP 243474 243474 19.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C18%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C6.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C7%2C0:12 scaffold43574 SAMTools SNP 243675 243675 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.19%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold43574 SAMTools SNP 243732 243732 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C37%2C16%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 244047 244047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C62%2C20%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C3.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 244545 244545 3.02 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C30%2C27%2C30%2C0%2C27:4 scaffold43574 SAMTools SNP 244554 244554 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C92%2C21%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 244928 244928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C20%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 249269 249269 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.24%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C150:94 scaffold43574 SAMTools SNP 249359 249359 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C35%2C39%2C16%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.72%2C1.4e-10%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43574 SAMTools SNP 249386 249386 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C46%2C9%2C27%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.38%2C1.1e-20%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43574 SAMTools SNP 249443 249443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C36%2C9%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.011%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 250549 250549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C11%2C44%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 250996 250996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C83%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43574 SAMTools SNP 251875 251875 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C10%3BMQ%3D16%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C157%2C0:99 scaffold43574 SAMTools SNP 253232 253232 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C36%2C41%2C33%3BMQ%3D37%3BFQ%3D206%3BPV4%3D1%2C1%2C0.5%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C238:99 scaffold43574 SAMTools SNP 254280 254280 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43574 SAMTools SNP 256185 256185 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43574 SAMTools SNP 258464 258464 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.44%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43574 SAMTools SNP 258503 258503 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.074%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43574 SAMTools SNP 258596 258596 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.53%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43574 SAMTools SNP 258620 258620 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43574 SAMTools SNP 258666 258666 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C230:99 scaffold43574 SAMTools SNP 267269 267269 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold43576 SAMTools SNP 1 1 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold43576 SAMTools SNP 367 367 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43576 SAMTools SNP 490 490 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C40:35 scaffold43576 SAMTools SNP 14478 14478 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 14902 14902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 15019 15019 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D22%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C129%2C0:99 scaffold43576 SAMTools SNP 15335 15335 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D542%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C0%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 15407 15407 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold43576 SAMTools SNP 15411 15411 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C3%3BMQ%3D49%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold43576 SAMTools SNP 15592 15592 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D657%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C574%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C0.34%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 15755 15755 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C35%3BMQ%3D41%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43576 SAMTools SNP 15790 15790 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D27%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C42%2C0:81 scaffold43576 SAMTools SNP 16051 16051 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43576 SAMTools SNP 16259 16259 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43576 SAMTools SNP 21206 21206 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 21578 21578 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 21716 21716 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 21728 21728 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C49%2C31%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 22949 22949 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 22979 22979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 23423 23423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C77%2C92%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 24529 24529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C55%2C10%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0089%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 24890 24890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 25175 25175 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 26891 26891 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 26923 26923 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43576 SAMTools SNP 26981 26981 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 28592 28592 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43576 SAMTools SNP 29365 29365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C40%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 29420 29420 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43576 SAMTools SNP 36140 36140 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43576 SAMTools SNP 39802 39802 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43576 SAMTools SNP 40154 40154 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43576 SAMTools SNP 40168 40168 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43576 SAMTools SNP 41014 41014 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43576 SAMTools SNP 42902 42902 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C9%2C20%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.74%2C1.9e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43576 SAMTools SNP 42947 42947 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C174:99 scaffold43576 SAMTools SNP 42956 42956 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43576 SAMTools SNP 43022 43022 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold43576 SAMTools SNP 43028 43028 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C12%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C238%2C0:99 scaffold43576 SAMTools SNP 43112 43112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C41%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43576 SAMTools SNP 43175 43175 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C50%2C11%2C42%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.11%2C3.4e-60%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43576 SAMTools SNP 43295 43295 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C40%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.1%2C4.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C207:99 scaffold43576 SAMTools SNP 43355 43355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 44254 44254 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 45360 45360 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C52%2C17%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 45363 45363 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 45495 45495 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.6%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43576 SAMTools SNP 49123 49123 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.011%2C8.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43576 SAMTools SNP 49177 49177 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C62%2C11%3BMQ%3D50%3BFQ%3D-217%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43576 SAMTools SNP 58719 58719 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43576 SAMTools SNP 61882 61882 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 62816 62816 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 62887 62887 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 63062 63062 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 63102 63102 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43576 SAMTools SNP 63749 63749 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43576 SAMTools SNP 64587 64587 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43576 SAMTools SNP 64590 64590 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43576 SAMTools SNP 64889 64889 34.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold43576 SAMTools SNP 67385 67385 51 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C75%2C0%2C62%2C38%2C59:99 scaffold43576 SAMTools SNP 67544 67544 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43576 SAMTools SNP 67964 67964 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43576 SAMTools SNP 68002 68002 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 68026 68026 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.17%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 68430 68430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43576 SAMTools SNP 68433 68433 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43576 SAMTools SNP 68460 68460 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C9%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.4%2C1.7e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C221:99 scaffold43576 SAMTools SNP 68577 68577 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43576 SAMTools SNP 69157 69157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C16%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold43576 SAMTools SNP 69390 69390 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.11%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 69655 69655 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43576 SAMTools SNP 70078 70078 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C15%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43576 SAMTools SNP 70138 70138 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C11%2C32%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold43576 SAMTools SNP 70678 70678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C13%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold43576 SAMTools SNP 71210 71210 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C13%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43576 SAMTools SNP 71228 71228 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 71249 71249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C1%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 71934 71934 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 71961 71961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43576 SAMTools SNP 74825 74825 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43576 SAMTools SNP 75448 75448 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C7%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.021%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43576 SAMTools SNP 75848 75848 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C31%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 75941 75941 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C19%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C9.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 76193 76193 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43576 SAMTools SNP 76234 76234 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C0.23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 76387 76387 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.042%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43576 SAMTools SNP 76408 76408 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43576 SAMTools SNP 76417 76417 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C20%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43576 SAMTools SNP 76554 76554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C11%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43576 SAMTools SNP 77061 77061 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.28%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 82064 82064 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C39%2C21%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D2.2e-05%2C6.2e-09%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43576 SAMTools SNP 82940 82940 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C7%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D4e-05%2C0.39%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43576 SAMTools SNP 85812 85812 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43576 SAMTools SNP 85827 85827 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43576 SAMTools SNP 86659 86659 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 86815 86815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 87337 87337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C24%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43576 SAMTools SNP 87549 87549 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C20%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold43576 SAMTools SNP 87761 87761 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43576 SAMTools SNP 88276 88276 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C12%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.38%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43576 SAMTools SNP 89071 89071 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 91165 91165 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 91179 91179 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 97247 97247 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.067%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C138:56 scaffold43576 SAMTools SNP 97488 97488 23.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold43576 SAMTools SNP 97591 97591 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43576 SAMTools SNP 97664 97664 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold43576 SAMTools SNP 98062 98062 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43576 SAMTools SNP 101214 101214 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43576 SAMTools SNP 101235 101235 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43576 SAMTools SNP 101281 101281 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43576 SAMTools SNP 101348 101348 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43576 SAMTools SNP 121211 121211 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C24%2C0:45 scaffold43576 SAMTools SNP 139158 139158 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C36%2C0:69 scaffold43576 SAMTools SNP 153573 153573 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43576 SAMTools SNP 202048 202048 41.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43576 SAMTools SNP 203594 203594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C32%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.096%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold43576 SAMTools SNP 206994 206994 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43576 SAMTools SNP 217103 217103 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43576 SAMTools SNP 217118 217118 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43576 SAMTools SNP 217134 217134 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold43576 SAMTools SNP 217329 217329 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold43576 SAMTools SNP 217338 217338 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.33%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C165:99 scaffold43576 SAMTools SNP 218179 218179 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.1%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43576 SAMTools SNP 219921 219921 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold43576 SAMTools SNP 219933 219933 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43576 SAMTools SNP 220005 220005 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43576 SAMTools SNP 220023 220023 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43576 SAMTools SNP 222152 222152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.00043%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43576 SAMTools SNP 222278 222278 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43576 SAMTools SNP 224327 224327 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43576 SAMTools SNP 226173 226173 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold43576 SAMTools SNP 228674 228674 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43576 SAMTools SNP 228839 228839 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43576 SAMTools SNP 229144 229144 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C175:99 scaffold43576 SAMTools SNP 229201 229201 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43576 SAMTools SNP 229577 229577 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1.3e-05%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43576 SAMTools SNP 230514 230514 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C180:99 scaffold43576 SAMTools SNP 230866 230866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43576 SAMTools SNP 230956 230956 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold43576 SAMTools SNP 231001 231001 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold43576 SAMTools SNP 231228 231228 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43576 SAMTools SNP 231240 231240 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43576 SAMTools SNP 231285 231285 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43576 SAMTools SNP 231360 231360 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C5.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C193:99 scaffold43576 SAMTools SNP 232017 232017 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43576 SAMTools SNP 234343 234343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43576 SAMTools SNP 234353 234353 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold43576 SAMTools SNP 234603 234603 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C5%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43576 SAMTools SNP 234623 234623 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C5%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43576 SAMTools SNP 236412 236412 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43576 SAMTools SNP 236461 236461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43576 SAMTools SNP 237020 237020 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold43576 SAMTools SNP 237517 237517 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43576 SAMTools SNP 237541 237541 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43576 SAMTools SNP 237554 237554 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43576 SAMTools SNP 251233 251233 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43598 SAMTools SNP 341 341 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C32%2C15%3BMQ%3D50%3BFQ%3D-151%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C124%2C0:99 scaffold43598 SAMTools SNP 527 527 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C55%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C181%2C0:99 scaffold43598 SAMTools SNP 698 698 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C31%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.7%2C8.6e-49%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43598 SAMTools SNP 833 833 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43598 SAMTools SNP 845 845 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C37%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D5.3e-13%2C1.2e-49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43598 SAMTools SNP 875 875 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold43598 SAMTools SNP 896 896 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.7e-11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C228:41 scaffold43598 SAMTools SNP 1421 1421 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C46%2C29%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0007%2C3.1e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43598 SAMTools SNP 1448 1448 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 1466 1466 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C26%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.29%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold43598 SAMTools SNP 1482 1482 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C45%2C5%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43598 SAMTools SNP 1493 1493 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C49%2C5%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.018%2C0.26%2C1%2C6.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43598 SAMTools SNP 1997 1997 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C12%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.31%2C3.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43598 SAMTools SNP 2011 2011 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43598 SAMTools SNP 2730 2730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43598 SAMTools SNP 2793 2793 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C14%2C15%2C8%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.26%2C1.2e-21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43598 SAMTools SNP 2799 2799 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C51%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C2.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43598 SAMTools SNP 3359 3359 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C18%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 3368 3368 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C51%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold43598 SAMTools SNP 3463 3463 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1.4e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 3472 3472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43598 SAMTools SNP 5214 5214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C78%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43598 SAMTools SNP 5307 5307 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.012%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold43598 SAMTools SNP 5569 5569 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.001%2C9.5e-08%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43598 SAMTools SNP 5583 5583 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C21%3BMQ%3D50%3BFQ%3D210%3BPV4%3D3.5e-05%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold43598 SAMTools SNP 5587 5587 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.039%2C0.00022%2C1%2C9.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43598 SAMTools SNP 5610 5610 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C35%2C5%2C5%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.039%2C0.063%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43598 SAMTools SNP 6443 6443 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 6494 6494 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C18%2C0:33 scaffold43598 SAMTools SNP 6728 6728 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C2%2C73%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C3.8e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43598 SAMTools SNP 7391 7391 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C15%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.32%2C2.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43598 SAMTools SNP 8087 8087 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C208:99 scaffold43598 SAMTools SNP 9205 9205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C31%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43598 SAMTools SNP 9230 9230 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 9234 9234 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C16%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 9573 9573 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C234:88 scaffold43598 SAMTools SNP 9962 9962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43598 SAMTools SNP 9984 9984 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43598 SAMTools SNP 10064 10064 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43598 SAMTools SNP 10068 10068 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold43598 SAMTools SNP 10517 10517 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold43598 SAMTools SNP 10558 10558 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold43598 SAMTools SNP 10607 10607 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold43598 SAMTools SNP 11077 11077 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C42%2C0:79 scaffold43598 SAMTools SNP 11316 11316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43598 SAMTools SNP 11355 11355 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C35%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43598 SAMTools SNP 11805 11805 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43598 SAMTools SNP 23083 23083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43598 SAMTools SNP 23116 23116 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C4%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.71%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43598 SAMTools SNP 23141 23141 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43598 SAMTools SNP 25381 25381 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C42%2C0:81 scaffold43598 SAMTools SNP 26376 26376 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43598 SAMTools SNP 41763 41763 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43598 SAMTools SNP 41779 41779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43598 SAMTools SNP 42780 42780 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.37%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43598 SAMTools SNP 42853 42853 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43598 SAMTools SNP 42879 42879 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43598 SAMTools SNP 42894 42894 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43598 SAMTools SNP 43752 43752 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43598 SAMTools SNP 43778 43778 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43598 SAMTools SNP 60158 60158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43598 SAMTools SNP 129117 129117 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold43598 SAMTools SNP 129425 129425 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.047%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43598 SAMTools SNP 129494 129494 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C11%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 130858 130858 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C44%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold43598 SAMTools SNP 130880 130880 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C11%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.49%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C238:99 scaffold43598 SAMTools SNP 130886 130886 55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold43598 SAMTools SNP 163654 163654 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold43598 SAMTools SNP 199547 199547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43598 SAMTools SNP 222409 222409 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D3.81%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C31:31 scaffold43598 SAMTools SNP 222436 222436 57.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0004%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.00062%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C7:10 scaffold43598 SAMTools SNP 222475 222475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C6%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43598 SAMTools SNP 222788 222788 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C5%2C57%2C151%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1.3e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold43598 SAMTools SNP 222793 222793 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C160%2C50%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D2.7e-19%2C0.16%2C0.022%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold43598 SAMTools SNP 223024 223024 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 223316 223316 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C227%2C10%2C43%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C7.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43598 SAMTools SNP 223375 223375 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C150%2C15%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 223382 223382 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C144%2C29%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 223411 223411 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C56%2C39%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-06%2C0.0033%2C1%2C1.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 223683 223683 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C51%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 224329 224329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D710%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D391%2C21%2C194%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43598 SAMTools SNP 224413 224413 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D593%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C216%2C31%2C293%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43598 SAMTools SNP 224523 224523 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C312%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43598 SAMTools SNP 224644 224644 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D25.6%3BPV4%3D1%2C0.063%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C53:56 scaffold43598 SAMTools SNP 224887 224887 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C56%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0014%2C1.4e-52%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43598 SAMTools SNP 225153 225153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D863%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C558%2C255%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C6.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43598 SAMTools SNP 230315 230315 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43598 SAMTools SNP 242888 242888 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43598 SAMTools SNP 244005 244005 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43598 SAMTools SNP 244155 244155 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43598 SAMTools SNP 244532 244532 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43598 SAMTools SNP 244545 244545 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43598 SAMTools SNP 253810 253810 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43598 SAMTools SNP 255645 255645 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C172:56 scaffold43598 SAMTools SNP 258323 258323 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43598 SAMTools SNP 267573 267573 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43598 SAMTools SNP 283020 283020 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C19%2C80%2C15%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.57%2C7e-173%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43598 SAMTools SNP 283104 283104 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C58%2C6%2C74%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.0042%2C1.8e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43598 SAMTools SNP 287838 287838 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43608 SAMTools SNP 6937 6937 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43608 SAMTools SNP 27736 27736 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43608 SAMTools SNP 27739 27739 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43608 SAMTools SNP 30015 30015 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43608 SAMTools SNP 30543 30543 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43608 SAMTools SNP 30777 30777 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00017%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43608 SAMTools SNP 30788 30788 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43608 SAMTools SNP 35374 35374 18 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43608 SAMTools SNP 36331 36331 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1.2e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 36770 36770 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43608 SAMTools SNP 36780 36780 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold43608 SAMTools SNP 37486 37486 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.5%2C0.17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43608 SAMTools SNP 37490 37490 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.52%2C0.37%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43608 SAMTools SNP 37555 37555 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C7%2C11%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold43608 SAMTools SNP 37563 37563 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 38539 38539 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.6%2C0.27%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43608 SAMTools SNP 39101 39101 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold43608 SAMTools SNP 39130 39130 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.29%2C0.31%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43608 SAMTools SNP 41612 41612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C59%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold43608 SAMTools SNP 46437 46437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 47139 47139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43608 SAMTools SNP 48416 48416 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43608 SAMTools SNP 51540 51540 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43608 SAMTools SNP 52250 52250 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold43608 SAMTools SNP 52312 52312 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43608 SAMTools SNP 67132 67132 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43608 SAMTools SNP 69225 69225 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.28%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43608 SAMTools SNP 69312 69312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 69469 69469 62.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold43608 SAMTools SNP 79807 79807 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.48%2C1.7e-28%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43608 SAMTools SNP 82680 82680 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C6.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C194:51 scaffold43608 SAMTools SNP 82766 82766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C6%2C38%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 83600 83600 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43608 SAMTools SNP 83768 83768 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43608 SAMTools SNP 83781 83781 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43608 SAMTools SNP 83839 83839 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.58%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43608 SAMTools SNP 84422 84422 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.098%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C228:99 scaffold43608 SAMTools SNP 85561 85561 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C107:99 scaffold43608 SAMTools SNP 87926 87926 57 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C48%2C0:92 scaffold43608 SAMTools SNP 88790 88790 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 89109 89109 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43608 SAMTools SNP 89459 89459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43608 SAMTools SNP 89462 89462 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43608 SAMTools SNP 91642 91642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43608 SAMTools SNP 92099 92099 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43608 SAMTools SNP 92140 92140 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 96252 96252 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43608 SAMTools SNP 96456 96456 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43608 SAMTools SNP 102155 102155 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43608 SAMTools SNP 124696 124696 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C138%2C0:99 scaffold43608 SAMTools SNP 125625 125625 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C3.3e-05%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43608 SAMTools SNP 126079 126079 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43608 SAMTools SNP 126507 126507 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43608 SAMTools SNP 126520 126520 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.084%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43608 SAMTools SNP 132667 132667 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43608 SAMTools SNP 153990 153990 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43608 SAMTools SNP 154034 154034 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold43608 SAMTools SNP 156976 156976 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43608 SAMTools SNP 158113 158113 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold43608 SAMTools SNP 159483 159483 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43608 SAMTools SNP 159499 159499 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43608 SAMTools SNP 159500 159500 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43608 SAMTools SNP 159688 159688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43608 SAMTools SNP 160092 160092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43608 SAMTools SNP 160103 160103 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43608 SAMTools SNP 160173 160173 36.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold43608 SAMTools SNP 160193 160193 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold43608 SAMTools SNP 167920 167920 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C24%2C0:45 scaffold43608 SAMTools SNP 168183 168183 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43608 SAMTools SNP 168891 168891 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43608 SAMTools SNP 200234 200234 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43608 SAMTools SNP 221176 221176 16.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43608 SAMTools SNP 263331 263331 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43608 SAMTools SNP 275045 275045 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43608 SAMTools SNP 275312 275312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43608 SAMTools SNP 275338 275338 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43608 SAMTools SNP 289679 289679 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold43616 SAMTools SNP 4875 4875 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 5068 5068 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold43616 SAMTools SNP 5409 5409 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43616 SAMTools SNP 7179 7179 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C42%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 7552 7552 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43616 SAMTools SNP 19014 19014 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 21656 21656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43616 SAMTools SNP 21716 21716 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold43616 SAMTools SNP 22155 22155 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.49%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold43616 SAMTools SNP 22159 22159 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.49%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43616 SAMTools SNP 22279 22279 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43616 SAMTools SNP 23592 23592 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C27%2C0:51 scaffold43616 SAMTools SNP 23623 23623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43616 SAMTools SNP 25098 25098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C16%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43616 SAMTools SNP 26359 26359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C41%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43616 SAMTools SNP 26450 26450 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C34%2C31%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold43616 SAMTools SNP 26459 26459 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C14%2C52%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 26671 26671 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C13%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 26976 26976 61.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C12:15 scaffold43616 SAMTools SNP 26978 26978 34.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold43616 SAMTools SNP 26990 26990 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C30:33 scaffold43616 SAMTools SNP 27009 27009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C4%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43616 SAMTools SNP 27449 27449 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43616 SAMTools SNP 27464 27464 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C42%2C0:81 scaffold43616 SAMTools SNP 29825 29825 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 30399 30399 8.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43616 SAMTools SNP 30780 30780 50.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold43616 SAMTools SNP 37821 37821 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.37%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43616 SAMTools SNP 40484 40484 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43616 SAMTools SNP 40531 40531 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43616 SAMTools SNP 41199 41199 55.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0%2C89%2C3%2C86:10 scaffold43616 SAMTools SNP 42003 42003 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43616 SAMTools SNP 42015 42015 88 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold43616 SAMTools SNP 42054 42054 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 42599 42599 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D46%3BFQ%3D51%3BPV4%3D1%2C0.19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C78:81 scaffold43616 SAMTools SNP 46223 46223 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43616 SAMTools SNP 46265 46265 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold43616 SAMTools SNP 46289 46289 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C0.22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C145:99 scaffold43616 SAMTools SNP 47618 47618 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43616 SAMTools SNP 51469 51469 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold43616 SAMTools SNP 51841 51841 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43616 SAMTools SNP 51879 51879 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.004%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C138:37 scaffold43616 SAMTools SNP 53443 53443 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43616 SAMTools SNP 54266 54266 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 54267 54267 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 59058 59058 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold43616 SAMTools SNP 59581 59581 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold43616 SAMTools SNP 59716 59716 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold43616 SAMTools SNP 61007 61007 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43616 SAMTools SNP 61451 61451 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 64081 64081 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C16%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C7.5e-19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold43616 SAMTools SNP 64222 64222 19.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C11:14 scaffold43616 SAMTools SNP 66998 66998 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43616 SAMTools SNP 67037 67037 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43616 SAMTools SNP 67048 67048 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.048%2C0.0021%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C187:79 scaffold43616 SAMTools SNP 67050 67050 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.015%2C0.0011%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C205:82 scaffold43616 SAMTools SNP 67841 67841 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C45%2C0:87 scaffold43616 SAMTools SNP 69460 69460 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.25%2C0.0047%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43616 SAMTools SNP 69734 69734 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 69747 69747 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 70221 70221 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 82259 82259 18.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold43616 SAMTools SNP 82975 82975 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold43616 SAMTools SNP 83278 83278 145 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C60%2C0:99 scaffold43616 SAMTools SNP 90464 90464 48 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C38:41 scaffold43616 SAMTools SNP 92818 92818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C24%2C9%3BMQ%3D37%3BFQ%3D-64%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold43616 SAMTools SNP 92819 92819 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C10%2C0%3BMQ%3D41%3BFQ%3D60%3BPV4%3D0.034%2C0.0089%2C1%2C7.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold43616 SAMTools SNP 92901 92901 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C174%2C24%2C184%3BMQ%3D37%3BFQ%3D128%3BPV4%3D0.24%2C1e-306%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43616 SAMTools SNP 92949 92949 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C3%2C29%3BMQ%3D33%3BFQ%3D225%3BPV4%3D0.69%2C0.4%2C0.14%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 93256 93256 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C15%3BMQ%3D39%3BFQ%3D201%3BPV4%3D0.37%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43616 SAMTools SNP 93286 93286 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D37%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C27%2C0:51 scaffold43616 SAMTools SNP 93570 93570 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C54%2C0:99 scaffold43616 SAMTools SNP 100835 100835 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C74:62 scaffold43616 SAMTools SNP 104916 104916 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D28%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C78%2C0:99 scaffold43616 SAMTools SNP 105276 105276 35.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D15%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C8%2C0:14 scaffold43616 SAMTools SNP 108569 108569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43616 SAMTools SNP 108755 108755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43616 SAMTools SNP 109197 109197 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43616 SAMTools SNP 109979 109979 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C15%2C0:27 scaffold43616 SAMTools SNP 110819 110819 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43616 SAMTools SNP 110888 110888 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C65:46 scaffold43616 SAMTools SNP 111617 111617 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.022%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43616 SAMTools SNP 111999 111999 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 112909 112909 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43616 SAMTools SNP 113579 113579 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43616 SAMTools SNP 113648 113648 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43616 SAMTools SNP 113720 113720 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43616 SAMTools SNP 116179 116179 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold43616 SAMTools SNP 118513 118513 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43616 SAMTools SNP 118571 118571 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold43616 SAMTools SNP 118978 118978 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C88%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 122882 122882 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D857%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43616 SAMTools SNP 122885 122885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D923%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43616 SAMTools SNP 122981 122981 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D929%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C282%2C611%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43616 SAMTools SNP 127385 127385 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43616 SAMTools SNP 127546 127546 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C61%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C187%2C0:99 scaffold43616 SAMTools SNP 127838 127838 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.54%2C6.7e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C217:70 scaffold43616 SAMTools SNP 134689 134689 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C121:99 scaffold43616 SAMTools SNP 135001 135001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C111%3BMQ%3D45%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43616 SAMTools SNP 135013 135013 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C92%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C30:33 scaffold43616 SAMTools SNP 135247 135247 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D23%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold43616 SAMTools SNP 135377 135377 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C1%2C0%3BMQ%3D18%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43616 SAMTools SNP 135572 135572 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 135778 135778 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D28%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C48%2C0:93 scaffold43616 SAMTools SNP 137477 137477 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D41%3BFQ%3D97%3BPV4%3D0.49%2C0.24%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C149:99 scaffold43616 SAMTools SNP 137480 137480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43616 SAMTools SNP 140503 140503 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D14%2C1%2C14%2C7%3BMQ%3D17%3BFQ%3D-37%3BPV4%3D0.1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C10%2C0:17 scaffold43616 SAMTools SNP 140527 140527 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D46%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43616 SAMTools SNP 140915 140915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C50%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 141134 141134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C80%2C48%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.8e-35%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 141145 141145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C20%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43616 SAMTools SNP 141196 141196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C24%2C128%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C6.1e-14%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 141941 141941 22.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold43616 SAMTools SNP 142055 142055 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold43616 SAMTools SNP 142253 142253 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C54%2C0:99 scaffold43616 SAMTools SNP 142257 142257 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D42.4%3BPV4%3D1%2C6.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C70:72 scaffold43616 SAMTools SNP 143878 143878 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C12%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C255%2C0:99 scaffold43616 SAMTools SNP 143923 143923 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43616 SAMTools SNP 158662 158662 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold43616 SAMTools SNP 159525 159525 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43616 SAMTools SNP 160442 160442 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold43616 SAMTools SNP 160482 160482 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 160500 160500 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43616 SAMTools SNP 162296 162296 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D1%2C0.25%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C110:99 scaffold43616 SAMTools SNP 162303 162303 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold43616 SAMTools SNP 162317 162317 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43616 SAMTools SNP 166002 166002 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C218:99 scaffold43616 SAMTools SNP 193012 193012 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 194280 194280 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 231450 231450 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43616 SAMTools SNP 231455 231455 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43616 SAMTools SNP 231525 231525 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43616 SAMTools SNP 232123 232123 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43616 SAMTools SNP 237129 237129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 239128 239128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C57%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43616 SAMTools SNP 239186 239186 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C7.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold43616 SAMTools SNP 239464 239464 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43616 SAMTools SNP 242920 242920 72.1 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C171%2C150%2C203%2C0%2C188:39 scaffold43616 SAMTools SNP 242932 242932 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.41%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold43616 SAMTools SNP 243031 243031 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43616 SAMTools SNP 243034 243034 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold43616 SAMTools SNP 244639 244639 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C38%2C14%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00073%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 244723 244723 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C50%2C39%3BMQ%3D50%3BFQ%3D-277%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43616 SAMTools SNP 245129 245129 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C30%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.0025%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 245827 245827 224 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C17%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.63%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43616 SAMTools SNP 246669 246669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C27%2C29%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 248247 248247 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43616 SAMTools SNP 248593 248593 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.57%3BPV4%3D1%2C3.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C23:27 scaffold43616 SAMTools SNP 248623 248623 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C51%2C0:99 scaffold43616 SAMTools SNP 250246 250246 71.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C4.5e-07%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C17:20 scaffold43616 SAMTools SNP 252830 252830 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C11%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.42%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 252839 252839 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.004%2C0.012%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43616 SAMTools SNP 252965 252965 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43616 SAMTools SNP 255163 255163 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43616 SAMTools SNP 255208 255208 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43616 SAMTools SNP 255353 255353 146 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C76%2C229%2C0%2C223:33 scaffold43616 SAMTools SNP 256214 256214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C0.35%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold43616 SAMTools SNP 257052 257052 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43616 SAMTools SNP 257218 257218 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43616 SAMTools SNP 257228 257228 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43616 SAMTools SNP 257236 257236 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43616 SAMTools SNP 257696 257696 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 257864 257864 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 259278 259278 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43616 SAMTools SNP 259311 259311 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43616 SAMTools SNP 259546 259546 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.021%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold43616 SAMTools SNP 259580 259580 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43616 SAMTools SNP 259830 259830 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C3.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 259851 259851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C43%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43616 SAMTools SNP 259902 259902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 260578 260578 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43616 SAMTools SNP 260602 260602 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.39%2C0.031%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43616 SAMTools SNP 269010 269010 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43616 SAMTools SNP 269148 269148 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43624 SAMTools SNP 89962 89962 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold43624 SAMTools SNP 106518 106518 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 106566 106566 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 138501 138501 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.034%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43624 SAMTools SNP 141810 141810 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43624 SAMTools SNP 142125 142125 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 142812 142812 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43624 SAMTools SNP 145058 145058 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 145088 145088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 145145 145145 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43624 SAMTools SNP 145324 145324 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43624 SAMTools SNP 146118 146118 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43624 SAMTools SNP 146125 146125 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43624 SAMTools SNP 146194 146194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43624 SAMTools SNP 146558 146558 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold43624 SAMTools SNP 146682 146682 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C101:34 scaffold43624 SAMTools SNP 147249 147249 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 147345 147345 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 147641 147641 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 148086 148086 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold43624 SAMTools SNP 148131 148131 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43624 SAMTools SNP 148146 148146 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43624 SAMTools SNP 215083 215083 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold43624 SAMTools SNP 215096 215096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43624 SAMTools SNP 215138 215138 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C15%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0046%2C6.8e-22%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold43624 SAMTools SNP 215330 215330 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.0014%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C77:80 scaffold43624 SAMTools SNP 215510 215510 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43624 SAMTools SNP 215541 215541 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold43624 SAMTools SNP 215572 215572 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C202:69 scaffold43624 SAMTools SNP 217889 217889 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold43624 SAMTools SNP 217978 217978 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1.1e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C204:99 scaffold43624 SAMTools SNP 218197 218197 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 238790 238790 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C231:57 scaffold43624 SAMTools SNP 258174 258174 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 258216 258216 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43624 SAMTools SNP 258257 258257 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold43624 SAMTools SNP 258819 258819 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43624 SAMTools SNP 258855 258855 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43624 SAMTools SNP 260712 260712 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.27%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43624 SAMTools SNP 261027 261027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43624 SAMTools SNP 261108 261108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43624 SAMTools SNP 262230 262230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43624 SAMTools SNP 262288 262288 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 262303 262303 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43624 SAMTools SNP 262928 262928 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C20%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 263365 263365 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C30%2C49%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 263377 263377 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C35%2C45%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 263411 263411 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C15%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D6.2e-12%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C242:99 scaffold43624 SAMTools SNP 263920 263920 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43624 SAMTools SNP 263983 263983 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43624 SAMTools SNP 265726 265726 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43624 SAMTools SNP 265756 265756 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold43624 SAMTools SNP 271369 271369 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C25%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C244%2C0:99 scaffold43624 SAMTools SNP 271390 271390 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C25%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.17%2C1.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43624 SAMTools SNP 271570 271570 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.035%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43624 SAMTools SNP 271970 271970 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C56%2C0%2C15%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.19%2C1%2C1%2C5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43624 SAMTools SNP 272035 272035 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C45%2C12%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-08%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 272385 272385 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43624 SAMTools SNP 272421 272421 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43624 SAMTools SNP 272491 272491 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.22%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C46:49 scaffold43624 SAMTools SNP 273415 273415 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold43624 SAMTools SNP 274106 274106 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C24%2C0:45 scaffold43624 SAMTools SNP 274755 274755 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C213:99 scaffold43624 SAMTools SNP 274903 274903 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43624 SAMTools SNP 274949 274949 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C169:99 scaffold43624 SAMTools SNP 275071 275071 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43624 SAMTools SNP 275078 275078 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C14%2C35%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 275115 275115 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C13%2C35%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 275148 275148 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C75%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43624 SAMTools SNP 275272 275272 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C11%2C1%2C5%3BMQ%3D49%3BFQ%3D16.1%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43624 SAMTools SNP 275843 275843 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C14%2C15%3BMQ%3D38%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C151:99 scaffold43624 SAMTools SNP 276986 276986 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold43624 SAMTools SNP 276996 276996 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold43624 SAMTools SNP 277189 277189 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C1%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43624 SAMTools SNP 277229 277229 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C4%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43624 SAMTools SNP 277523 277523 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43624 SAMTools SNP 277781 277781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C23%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43624 SAMTools SNP 279830 279830 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43624 SAMTools SNP 279857 279857 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 284107 284107 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43624 SAMTools SNP 284315 284315 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C14%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43624 SAMTools SNP 287315 287315 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43624 SAMTools SNP 288581 288581 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 289060 289060 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43624 SAMTools SNP 289245 289245 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43624 SAMTools SNP 289286 289286 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43624 SAMTools SNP 289955 289955 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold43624 SAMTools SNP 290036 290036 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 290166 290166 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43624 SAMTools SNP 290169 290169 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43624 SAMTools SNP 290188 290188 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43624 SAMTools SNP 290321 290321 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold43624 SAMTools SNP 290665 290665 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43624 SAMTools SNP 290733 290733 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43630 SAMTools SNP 9179 9179 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43630 SAMTools SNP 9255 9255 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 9261 9261 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold43630 SAMTools SNP 9786 9786 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43630 SAMTools SNP 9847 9847 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43630 SAMTools SNP 11116 11116 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43630 SAMTools SNP 13855 13855 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43630 SAMTools SNP 13870 13870 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43630 SAMTools SNP 23995 23995 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 24058 24058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43630 SAMTools SNP 24621 24621 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43630 SAMTools SNP 24657 24657 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.052%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43630 SAMTools SNP 24678 24678 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43630 SAMTools SNP 26514 26514 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0046%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold43630 SAMTools SNP 26559 26559 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C7%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.052%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43630 SAMTools SNP 27221 27221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C23%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.023%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 31381 31381 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C260%2C27%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43630 SAMTools SNP 31654 31654 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C128%2C94%2C138%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0063%2C0%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold43630 SAMTools SNP 31873 31873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C324%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43630 SAMTools SNP 31985 31985 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43630 SAMTools SNP 32909 32909 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43630 SAMTools SNP 35543 35543 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C0.28%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C215:99 scaffold43630 SAMTools SNP 36791 36791 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold43630 SAMTools SNP 37001 37001 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43630 SAMTools SNP 37172 37172 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43630 SAMTools SNP 39898 39898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43630 SAMTools SNP 39926 39926 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43630 SAMTools SNP 42888 42888 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43630 SAMTools SNP 42920 42920 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C170:99 scaffold43630 SAMTools SNP 43714 43714 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C0.29%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C237:99 scaffold43630 SAMTools SNP 45809 45809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C11%3BMQ%3D50%3BFQ%3D-47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold43630 SAMTools SNP 47000 47000 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.39%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 47821 47821 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.011%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43630 SAMTools SNP 58345 58345 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold43630 SAMTools SNP 59055 59055 202 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C54%2C0%2C222%2C28%2C219:99 scaffold43630 SAMTools SNP 59289 59289 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C2.4e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 59700 59700 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.13%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43630 SAMTools SNP 59750 59750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43630 SAMTools SNP 72159 72159 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 72256 72256 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43630 SAMTools SNP 75755 75755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C38%2C51%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 82679 82679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C73%2C11%2C57%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 82956 82956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C46%2C3%2C34%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.0074%2C0.15%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 85450 85450 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C56%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 86261 86261 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 86276 86276 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 86285 86285 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C37%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43630 SAMTools SNP 86654 86654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C12%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold43630 SAMTools SNP 87178 87178 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C38%2C6%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.054%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43630 SAMTools SNP 87654 87654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 87693 87693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C50%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold43630 SAMTools SNP 88269 88269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C13%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold43630 SAMTools SNP 88739 88739 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C12%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 88958 88958 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43630 SAMTools SNP 89125 89125 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 89149 89149 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43630 SAMTools SNP 89416 89416 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C231:52 scaffold43630 SAMTools SNP 89458 89458 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43630 SAMTools SNP 90136 90136 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 90178 90178 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C45%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 91780 91780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C7%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43630 SAMTools SNP 92036 92036 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 92066 92066 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C39%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 92837 92837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43630 SAMTools SNP 92888 92888 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C26%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43630 SAMTools SNP 96979 96979 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0:63 scaffold43630 SAMTools SNP 97298 97298 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C255%2C0:99 scaffold43630 SAMTools SNP 98222 98222 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C0%2C36%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1.4e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43630 SAMTools SNP 98394 98394 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C72%2C0:99 scaffold43630 SAMTools SNP 100791 100791 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.006%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C253:31 scaffold43630 SAMTools SNP 100894 100894 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43630 SAMTools SNP 100939 100939 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43630 SAMTools SNP 101933 101933 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43630 SAMTools SNP 103712 103712 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.021%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C88:64 scaffold43630 SAMTools SNP 103737 103737 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43630 SAMTools SNP 103768 103768 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43630 SAMTools SNP 104028 104028 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43630 SAMTools SNP 104157 104157 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 127318 127318 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43630 SAMTools SNP 132217 132217 201 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C166:99 scaffold43630 SAMTools SNP 132413 132413 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 132437 132437 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C0.33%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold43630 SAMTools SNP 134065 134065 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold43630 SAMTools SNP 134153 134153 39.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold43630 SAMTools SNP 134189 134189 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43630 SAMTools SNP 135141 135141 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43630 SAMTools SNP 135190 135190 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.12%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43630 SAMTools SNP 135191 135191 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43630 SAMTools SNP 137367 137367 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 138208 138208 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.031%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold43630 SAMTools SNP 141994 141994 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43630 SAMTools SNP 148232 148232 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43630 SAMTools SNP 163890 163890 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43630 SAMTools SNP 164037 164037 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43630 SAMTools SNP 164732 164732 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43630 SAMTools SNP 165025 165025 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C8:75 scaffold43630 SAMTools SNP 165202 165202 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43630 SAMTools SNP 165698 165698 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.17%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold43630 SAMTools SNP 165822 165822 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43630 SAMTools SNP 166605 166605 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 166614 166614 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 166649 166649 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43630 SAMTools SNP 166665 166665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43630 SAMTools SNP 189782 189782 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D43%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C162:72 scaffold43630 SAMTools SNP 189802 189802 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold43630 SAMTools SNP 189888 189888 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43630 SAMTools SNP 190124 190124 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 190591 190591 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold43630 SAMTools SNP 190642 190642 59.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold43630 SAMTools SNP 193294 193294 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 193429 193429 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43630 SAMTools SNP 193430 193430 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43630 SAMTools SNP 193644 193644 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold43630 SAMTools SNP 193655 193655 212 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.5%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C96:99 scaffold43630 SAMTools SNP 194085 194085 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00024%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C153:55 scaffold43630 SAMTools SNP 194197 194197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 194758 194758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C11%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C16:19 scaffold43630 SAMTools SNP 195234 195234 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C24%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43630 SAMTools SNP 195425 195425 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C30%2C0:57 scaffold43630 SAMTools SNP 195576 195576 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 195769 195769 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43630 SAMTools SNP 195771 195771 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43630 SAMTools SNP 195821 195821 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D51.8%3BPV4%3D1%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C80:82 scaffold43630 SAMTools SNP 199434 199434 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43630 SAMTools SNP 214494 214494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43630 SAMTools SNP 215147 215147 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold43630 SAMTools SNP 215276 215276 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43630 SAMTools SNP 215277 215277 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43630 SAMTools SNP 218622 218622 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43630 SAMTools SNP 219768 219768 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43630 SAMTools SNP 221178 221178 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43630 SAMTools SNP 236768 236768 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C56%2C0%2C7%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43630 SAMTools SNP 236986 236986 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43630 SAMTools SNP 237068 237068 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43630 SAMTools SNP 237339 237339 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.29%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43630 SAMTools SNP 237364 237364 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43630 SAMTools SNP 237528 237528 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C8%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D4.4e-05%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C227:99 scaffold43630 SAMTools SNP 238546 238546 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.41%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43630 SAMTools SNP 238548 238548 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.57%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43630 SAMTools SNP 238988 238988 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0008%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 240620 240620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 241660 241660 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 241702 241702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C27%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43630 SAMTools SNP 245209 245209 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C12%2C118%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C3.1e-14%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43630 SAMTools SNP 247175 247175 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43630 SAMTools SNP 249082 249082 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43630 SAMTools SNP 249095 249095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43630 SAMTools SNP 249159 249159 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C86%3BMQ%3D50%3BFQ%3D-247%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold43630 SAMTools SNP 250396 250396 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43630 SAMTools SNP 251635 251635 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43630 SAMTools SNP 278063 278063 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43634 SAMTools SNP 6951 6951 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 6957 6957 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 121811 121811 6.95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold43634 SAMTools SNP 132093 132093 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43634 SAMTools SNP 132496 132496 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 137410 137410 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43634 SAMTools SNP 217712 217712 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 217721 217721 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43634 SAMTools SNP 218277 218277 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43634 SAMTools SNP 236683 236683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 237399 237399 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43634 SAMTools SNP 243662 243662 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43634 SAMTools SNP 246681 246681 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43634 SAMTools SNP 246735 246735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43634 SAMTools SNP 252505 252505 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43634 SAMTools SNP 261706 261706 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43648 SAMTools SNP 166 166 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43648 SAMTools SNP 2272 2272 17.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold43648 SAMTools SNP 2515 2515 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43648 SAMTools SNP 2535 2535 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C41:44 scaffold43648 SAMTools SNP 2776 2776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C84%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 3715 3715 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C7%2C44%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold43648 SAMTools SNP 3727 3727 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C7%2C121%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.8e-52%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 4460 4460 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C52%2C35%2C100%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 4517 4517 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C29%2C17%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.07%2C1e-11%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43648 SAMTools SNP 4541 4541 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C31%2C45%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C6.3e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 9241 9241 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43648 SAMTools SNP 9608 9608 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43648 SAMTools SNP 10069 10069 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43648 SAMTools SNP 10075 10075 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43648 SAMTools SNP 10357 10357 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43648 SAMTools SNP 11241 11241 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43648 SAMTools SNP 12231 12231 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C240:99 scaffold43648 SAMTools SNP 12240 12240 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43648 SAMTools SNP 12360 12360 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 12365 12365 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43648 SAMTools SNP 13083 13083 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43648 SAMTools SNP 13253 13253 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43648 SAMTools SNP 13254 13254 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43648 SAMTools SNP 13341 13341 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43648 SAMTools SNP 13351 13351 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43648 SAMTools SNP 13763 13763 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43648 SAMTools SNP 14274 14274 78.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C15%2C0:27 scaffold43648 SAMTools SNP 14708 14708 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold43648 SAMTools SNP 14730 14730 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 15511 15511 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43648 SAMTools SNP 17207 17207 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43648 SAMTools SNP 17221 17221 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold43648 SAMTools SNP 17225 17225 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43648 SAMTools SNP 33088 33088 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43648 SAMTools SNP 33203 33203 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.0002%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C121:66 scaffold43648 SAMTools SNP 33660 33660 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 33936 33936 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C38%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43648 SAMTools SNP 34411 34411 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C15%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.3%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43648 SAMTools SNP 34796 34796 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C6%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.029%2C7.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43648 SAMTools SNP 34903 34903 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold43648 SAMTools SNP 35584 35584 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold43648 SAMTools SNP 49964 49964 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43648 SAMTools SNP 50026 50026 89.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold43648 SAMTools SNP 50120 50120 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43648 SAMTools SNP 51315 51315 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43648 SAMTools SNP 52319 52319 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43648 SAMTools SNP 52356 52356 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43648 SAMTools SNP 52828 52828 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold43648 SAMTools SNP 53310 53310 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C17:20 scaffold43648 SAMTools SNP 54078 54078 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43648 SAMTools SNP 75205 75205 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 86276 86276 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 86291 86291 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43648 SAMTools SNP 86635 86635 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.071%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43648 SAMTools SNP 86643 86643 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43648 SAMTools SNP 86650 86650 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43648 SAMTools SNP 87108 87108 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43648 SAMTools SNP 87115 87115 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43648 SAMTools SNP 95135 95135 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 111030 111030 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 111047 111047 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 122904 122904 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 122963 122963 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 124739 124739 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 125697 125697 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 126352 126352 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43648 SAMTools SNP 128633 128633 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 128688 128688 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 129810 129810 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 133612 133612 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43648 SAMTools SNP 141103 141103 202 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C80%2C35%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D2e-26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43648 SAMTools SNP 141131 141131 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C36%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D3.8e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold43648 SAMTools SNP 141535 141535 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D2.1e-07%2C0.0082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43648 SAMTools SNP 141541 141541 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1.3e-06%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43648 SAMTools SNP 141682 141682 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43648 SAMTools SNP 142168 142168 19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold43648 SAMTools SNP 142292 142292 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C0.1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold43648 SAMTools SNP 142313 142313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43648 SAMTools SNP 143087 143087 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C42%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1.9e-12%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C221:99 scaffold43648 SAMTools SNP 143112 143112 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C0%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D2.3e-06%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43648 SAMTools SNP 145345 145345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C72%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43648 SAMTools SNP 151777 151777 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D36%2C0%2C324%2C12%3BMQ%3D50%3BFQ%3D-277%3BPV4%3D0.62%2C0.018%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43648 SAMTools SNP 152972 152972 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C137%2C0%2C168%3BMQ%3D50%3BFQ%3D222%3BPV4%3D2.9e-28%2C3.6e-18%2C1%2C2.8e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43648 SAMTools SNP 154251 154251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C54%2C12%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 154947 154947 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.49%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43648 SAMTools SNP 154970 154970 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43648 SAMTools SNP 154973 154973 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43648 SAMTools SNP 155718 155718 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C3%2C37%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 156219 156219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C49%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 156231 156231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43648 SAMTools SNP 156255 156255 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C33%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43648 SAMTools SNP 160289 160289 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C52%2C63%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43648 SAMTools SNP 165284 165284 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C93%2C0:99 scaffold43648 SAMTools SNP 165365 165365 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43648 SAMTools SNP 166246 166246 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43648 SAMTools SNP 167077 167077 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C71:54 scaffold43648 SAMTools SNP 167522 167522 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C15%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C5.1e-13%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C147:99 scaffold43648 SAMTools SNP 169165 169165 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43648 SAMTools SNP 170573 170573 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0075%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43648 SAMTools SNP 170627 170627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43648 SAMTools SNP 172047 172047 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C20:23 scaffold43648 SAMTools SNP 175028 175028 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C21%2C0:39 scaffold43648 SAMTools SNP 195502 195502 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43648 SAMTools SNP 195560 195560 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 195748 195748 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43648 SAMTools SNP 195780 195780 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 196355 196355 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43648 SAMTools SNP 196480 196480 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold43648 SAMTools SNP 196677 196677 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold43648 SAMTools SNP 196688 196688 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.0026%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C204:34 scaffold43648 SAMTools SNP 232575 232575 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 232589 232589 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43648 SAMTools SNP 234615 234615 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43648 SAMTools SNP 291483 291483 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43648 SAMTools SNP 291809 291809 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C33%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43648 SAMTools SNP 293811 293811 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C8%2C57%3BMQ%3D50%3BFQ%3D-98%3BPV4%3D1%2C0.44%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C71%2C0:99 scaffold43648 SAMTools SNP 293861 293861 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43648 SAMTools SNP 293870 293870 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold43648 SAMTools SNP 294007 294007 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C0.13%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold43660 SAMTools SNP 877 877 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 31721 31721 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43660 SAMTools SNP 80049 80049 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43660 SAMTools SNP 80247 80247 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.096%2C0.014%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43660 SAMTools SNP 80253 80253 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0009%2C0.0001%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43660 SAMTools SNP 108650 108650 33.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold43660 SAMTools SNP 108773 108773 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold43660 SAMTools SNP 109072 109072 27.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold43660 SAMTools SNP 110395 110395 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C126%2C0:99 scaffold43660 SAMTools SNP 158816 158816 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold43660 SAMTools SNP 158888 158888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43660 SAMTools SNP 158933 158933 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0094%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43660 SAMTools SNP 159432 159432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C10%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43660 SAMTools SNP 160550 160550 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C68%2C12%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 161271 161271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 168581 168581 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43660 SAMTools SNP 168602 168602 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C98:99 scaffold43660 SAMTools SNP 168637 168637 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43660 SAMTools SNP 169719 169719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43660 SAMTools SNP 169726 169726 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43660 SAMTools SNP 170787 170787 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 170841 170841 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 174707 174707 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43660 SAMTools SNP 174739 174739 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.011%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold43660 SAMTools SNP 174763 174763 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C208:99 scaffold43660 SAMTools SNP 175044 175044 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold43660 SAMTools SNP 175089 175089 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 175252 175252 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold43660 SAMTools SNP 175315 175315 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43660 SAMTools SNP 175324 175324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 175800 175800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C22:25 scaffold43660 SAMTools SNP 179725 179725 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43660 SAMTools SNP 180397 180397 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold43660 SAMTools SNP 180637 180637 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold43660 SAMTools SNP 183436 183436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43660 SAMTools SNP 183466 183466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43660 SAMTools SNP 185587 185587 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.28%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C79:82 scaffold43660 SAMTools SNP 185617 185617 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 185623 185623 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 187501 187501 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold43660 SAMTools SNP 188998 188998 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43660 SAMTools SNP 196549 196549 7.39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold43660 SAMTools SNP 196643 196643 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C66%2C0:99 scaffold43660 SAMTools SNP 197632 197632 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold43660 SAMTools SNP 197947 197947 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43660 SAMTools SNP 199019 199019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43660 SAMTools SNP 199589 199589 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold43660 SAMTools SNP 199799 199799 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43660 SAMTools SNP 199838 199838 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43660 SAMTools SNP 200474 200474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43660 SAMTools SNP 202223 202223 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C9%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold43660 SAMTools SNP 202349 202349 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43660 SAMTools SNP 203407 203407 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43660 SAMTools SNP 203588 203588 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43660 SAMTools SNP 203957 203957 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold43660 SAMTools SNP 205162 205162 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C0.0013%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43660 SAMTools SNP 205264 205264 164 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C57%2C0:99 scaffold43660 SAMTools SNP 230572 230572 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.026%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43660 SAMTools SNP 234595 234595 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43660 SAMTools SNP 234600 234600 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43660 SAMTools SNP 262516 262516 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold43660 SAMTools SNP 262548 262548 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.36%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C75:42 scaffold43660 SAMTools SNP 262880 262880 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 263137 263137 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43660 SAMTools SNP 264916 264916 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43660 SAMTools SNP 272962 272962 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold43662 SAMTools SNP 260 260 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43662 SAMTools SNP 365 365 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43662 SAMTools SNP 114649 114649 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43662 SAMTools SNP 162743 162743 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D6.96%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C55:33 scaffold43662 SAMTools SNP 167748 167748 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43662 SAMTools SNP 167776 167776 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C1%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.12%2C1%2C1%2C5.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43662 SAMTools SNP 168507 168507 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold43662 SAMTools SNP 168526 168526 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C20%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.57%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold43662 SAMTools SNP 168573 168573 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.54%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43662 SAMTools SNP 168714 168714 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C108%2C0:99 scaffold43662 SAMTools SNP 168800 168800 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C102%2C0:99 scaffold43662 SAMTools SNP 169204 169204 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold43662 SAMTools SNP 186720 186720 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43662 SAMTools SNP 264703 264703 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43662 SAMTools SNP 285895 285895 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43662 SAMTools SNP 285908 285908 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43662 SAMTools SNP 286373 286373 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43664 SAMTools SNP 16306 16306 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43664 SAMTools SNP 16317 16317 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43664 SAMTools SNP 27618 27618 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43664 SAMTools SNP 35628 35628 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold43664 SAMTools SNP 67179 67179 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43664 SAMTools SNP 68267 68267 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43664 SAMTools SNP 68504 68504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C17%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold43664 SAMTools SNP 70000 70000 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 70027 70027 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43664 SAMTools SNP 72067 72067 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43664 SAMTools SNP 72387 72387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43664 SAMTools SNP 72414 72414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43664 SAMTools SNP 72514 72514 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C3%2C19%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.32%2C1.8e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43664 SAMTools SNP 79596 79596 41.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43664 SAMTools SNP 90490 90490 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43664 SAMTools SNP 91492 91492 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43664 SAMTools SNP 92130 92130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C4%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43664 SAMTools SNP 92896 92896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C71%2C2%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43664 SAMTools SNP 95874 95874 13 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43664 SAMTools SNP 98814 98814 57.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold43664 SAMTools SNP 101961 101961 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C42%2C0:81 scaffold43664 SAMTools SNP 102716 102716 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43664 SAMTools SNP 102948 102948 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43664 SAMTools SNP 102969 102969 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0084%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43664 SAMTools SNP 103020 103020 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold43664 SAMTools SNP 103660 103660 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 103696 103696 153 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C69%2C183%2C0%2C177:33 scaffold43664 SAMTools SNP 103735 103735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43664 SAMTools SNP 105311 105311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43664 SAMTools SNP 106020 106020 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43664 SAMTools SNP 106062 106062 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.28%2C0.21%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold43664 SAMTools SNP 106083 106083 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43664 SAMTools SNP 107084 107084 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43664 SAMTools SNP 107207 107207 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold43664 SAMTools SNP 107219 107219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43664 SAMTools SNP 107642 107642 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C191:52 scaffold43664 SAMTools SNP 107645 107645 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C30%2C0:57 scaffold43664 SAMTools SNP 114740 114740 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 115618 115618 59.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold43664 SAMTools SNP 115641 115641 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold43664 SAMTools SNP 116238 116238 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold43664 SAMTools SNP 116274 116274 92.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold43664 SAMTools SNP 116873 116873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D46%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43664 SAMTools SNP 116909 116909 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold43664 SAMTools SNP 117316 117316 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C5%2C9%3BMQ%3D49%3BFQ%3D216%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43664 SAMTools SNP 117358 117358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43664 SAMTools SNP 117373 117373 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.028%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C154:99 scaffold43664 SAMTools SNP 119252 119252 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43664 SAMTools SNP 119288 119288 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 120149 120149 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43664 SAMTools SNP 131022 131022 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 131040 131040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 131959 131959 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43664 SAMTools SNP 131982 131982 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43664 SAMTools SNP 132304 132304 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43664 SAMTools SNP 132414 132414 30.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold43664 SAMTools SNP 133062 133062 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.2%2C0.0046%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C227:30 scaffold43664 SAMTools SNP 134000 134000 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00093%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C32:35 scaffold43664 SAMTools SNP 134301 134301 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D75.8%3BPV4%3D0.52%2C6.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C116:99 scaffold43664 SAMTools SNP 135342 135342 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C51%2C0:74 scaffold43664 SAMTools SNP 135765 135765 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C14%2C14%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C4.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43664 SAMTools SNP 135816 135816 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C69%2C0:99 scaffold43664 SAMTools SNP 158771 158771 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C3.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C226:99 scaffold43664 SAMTools SNP 164959 164959 168 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C30%2C12%2C191%2C0%2C188:33 scaffold43664 SAMTools SNP 165906 165906 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43664 SAMTools SNP 167515 167515 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.082%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43664 SAMTools SNP 168691 168691 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C10%2C1%3BMQ%3D41%3BFQ%3D107%3BPV4%3D0.049%2C0.0077%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43664 SAMTools SNP 172569 172569 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43664 SAMTools SNP 173212 173212 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 174339 174339 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C7%3BMQ%3D32%3BFQ%3D77%3BPV4%3D0.22%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C179:99 scaffold43664 SAMTools SNP 181243 181243 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43664 SAMTools SNP 182211 182211 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43664 SAMTools SNP 182945 182945 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 182948 182948 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 184387 184387 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C24%2C0:45 scaffold43664 SAMTools SNP 184396 184396 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold43664 SAMTools SNP 185151 185151 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C81%2C0:99 scaffold43664 SAMTools SNP 188249 188249 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43664 SAMTools SNP 191720 191720 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43664 SAMTools SNP 218603 218603 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold43664 SAMTools SNP 218640 218640 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold43664 SAMTools SNP 235948 235948 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43664 SAMTools SNP 235966 235966 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43664 SAMTools SNP 236724 236724 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43664 SAMTools SNP 238710 238710 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43664 SAMTools SNP 241955 241955 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43664 SAMTools SNP 241975 241975 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.028%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C176:99 scaffold43664 SAMTools SNP 242889 242889 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43664 SAMTools SNP 242943 242943 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 244305 244305 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43664 SAMTools SNP 244314 244314 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 244350 244350 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0063%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43664 SAMTools SNP 244464 244464 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43664 SAMTools SNP 252299 252299 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43664 SAMTools SNP 252581 252581 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold43664 SAMTools SNP 253288 253288 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D4.72%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C47:28 scaffold43664 SAMTools SNP 253533 253533 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold43664 SAMTools SNP 253839 253839 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00076%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C88:31 scaffold43664 SAMTools SNP 253845 253845 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43664 SAMTools SNP 254655 254655 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold43664 SAMTools SNP 254928 254928 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold43664 SAMTools SNP 254934 254934 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43664 SAMTools SNP 255297 255297 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43664 SAMTools SNP 255465 255465 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43664 SAMTools SNP 255483 255483 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43664 SAMTools SNP 256303 256303 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43664 SAMTools SNP 256330 256330 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold43664 SAMTools SNP 256360 256360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.54%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold43664 SAMTools SNP 257941 257941 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C48%2C0:93 scaffold43664 SAMTools SNP 258025 258025 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold43664 SAMTools SNP 258238 258238 92 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0%2C115%2C9%2C112:57 scaffold43664 SAMTools SNP 258586 258586 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C93%2C0:99 scaffold43664 SAMTools SNP 258709 258709 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43664 SAMTools SNP 264991 264991 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43664 SAMTools SNP 266458 266458 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C21%2C0:39 scaffold43664 SAMTools SNP 266496 266496 80.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C18%2C0:33 scaffold43664 SAMTools SNP 270653 270653 81 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0%2C110%2C16%2C107:57 scaffold43664 SAMTools SNP 270671 270671 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold43664 SAMTools SNP 270749 270749 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43664 SAMTools SNP 270773 270773 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43664 SAMTools SNP 271581 271581 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold43664 SAMTools SNP 271707 271707 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43664 SAMTools SNP 272402 272402 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C21%2C0:39 scaffold43664 SAMTools SNP 272926 272926 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43664 SAMTools SNP 273665 273665 74.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold43664 SAMTools SNP 273686 273686 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 273716 273716 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 274657 274657 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 274701 274701 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 277270 277270 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C56%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43664 SAMTools SNP 277285 277285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43664 SAMTools SNP 277711 277711 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C243:99 scaffold43664 SAMTools SNP 277780 277780 92.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C18%2C0:33 scaffold43664 SAMTools SNP 278217 278217 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43664 SAMTools SNP 278301 278301 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43664 SAMTools SNP 278689 278689 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43664 SAMTools SNP 278734 278734 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43664 SAMTools SNP 279483 279483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 279539 279539 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43664 SAMTools SNP 279561 279561 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43664 SAMTools SNP 279943 279943 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43664 SAMTools SNP 280048 280048 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43664 SAMTools SNP 280553 280553 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0052%2C0.23%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43664 SAMTools SNP 280749 280749 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 280755 280755 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold43664 SAMTools SNP 280812 280812 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.021%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold43664 SAMTools SNP 281241 281241 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43664 SAMTools SNP 281307 281307 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0114%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43664 SAMTools SNP 281560 281560 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43664 SAMTools SNP 281596 281596 144 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C47%2C35%2C171%2C0%2C168:21 scaffold43664 SAMTools SNP 281602 281602 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43664 SAMTools SNP 281863 281863 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43664 SAMTools SNP 282794 282794 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold43664 SAMTools SNP 282821 282821 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43664 SAMTools SNP 283211 283211 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 283840 283840 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C140:99 scaffold43664 SAMTools SNP 283903 283903 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43664 SAMTools SNP 283933 283933 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C3%2C0:6 scaffold43664 SAMTools SNP 284848 284848 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43664 SAMTools SNP 285304 285304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C3%2C39%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43664 SAMTools SNP 285394 285394 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43664 SAMTools SNP 285424 285424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43664 SAMTools SNP 289849 289849 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43664 SAMTools SNP 290427 290427 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C36%2C0:69 scaffold43664 SAMTools SNP 290517 290517 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C30%2C0:57 scaffold43664 SAMTools SNP 291247 291247 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C21%2C0:39 scaffold43664 SAMTools SNP 295373 295373 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-143%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C116%2C0:99 scaffold43664 SAMTools SNP 295825 295825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43664 SAMTools SNP 297336 297336 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43664 SAMTools SNP 297423 297423 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43664 SAMTools SNP 297772 297772 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43676 SAMTools SNP 1367 1367 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 1373 1373 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 1458 1458 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold43676 SAMTools SNP 1830 1830 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43676 SAMTools SNP 1860 1860 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43676 SAMTools SNP 1893 1893 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold43676 SAMTools SNP 1903 1903 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43676 SAMTools SNP 2279 2279 11.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold43676 SAMTools SNP 2348 2348 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43676 SAMTools SNP 2349 2349 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43676 SAMTools SNP 17839 17839 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C80:79 scaffold43676 SAMTools SNP 20975 20975 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C152:99 scaffold43676 SAMTools SNP 22250 22250 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43676 SAMTools SNP 22412 22412 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C6.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C228:97 scaffold43676 SAMTools SNP 22443 22443 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43676 SAMTools SNP 23640 23640 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C30%2C0:57 scaffold43676 SAMTools SNP 28976 28976 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43676 SAMTools SNP 31093 31093 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold43676 SAMTools SNP 31542 31542 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.22%2C0.088%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43676 SAMTools SNP 32123 32123 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43676 SAMTools SNP 32181 32181 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C117:40 scaffold43676 SAMTools SNP 57464 57464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43676 SAMTools SNP 57491 57491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43676 SAMTools SNP 57869 57869 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43676 SAMTools SNP 57914 57914 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C18%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.064%2C2.7e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43676 SAMTools SNP 58233 58233 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43676 SAMTools SNP 58420 58420 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.052%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C191:47 scaffold43676 SAMTools SNP 58995 58995 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C48%2C0:93 scaffold43676 SAMTools SNP 59670 59670 43.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold43676 SAMTools SNP 61322 61322 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C174:33 scaffold43676 SAMTools SNP 61629 61629 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C9.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C243:76 scaffold43676 SAMTools SNP 62034 62034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 63103 63103 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 63151 63151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C5.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 63897 63897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43676 SAMTools SNP 64003 64003 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43676 SAMTools SNP 64004 64004 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43676 SAMTools SNP 64042 64042 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C21%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43676 SAMTools SNP 64572 64572 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C15%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43676 SAMTools SNP 64621 64621 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43676 SAMTools SNP 65072 65072 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 65176 65176 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C245:99 scaffold43676 SAMTools SNP 65507 65507 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C245:66 scaffold43676 SAMTools SNP 66711 66711 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43676 SAMTools SNP 67482 67482 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43676 SAMTools SNP 67660 67660 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43676 SAMTools SNP 67817 67817 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43676 SAMTools SNP 67872 67872 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 67902 67902 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C197:99 scaffold43676 SAMTools SNP 67905 67905 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.4%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C204:99 scaffold43676 SAMTools SNP 67935 67935 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43676 SAMTools SNP 67944 67944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 68746 68746 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 69740 69740 15.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold43676 SAMTools SNP 70231 70231 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.38%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C249:99 scaffold43676 SAMTools SNP 70440 70440 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 71162 71162 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43676 SAMTools SNP 71196 71196 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43676 SAMTools SNP 71199 71199 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43676 SAMTools SNP 71670 71670 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C35%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43676 SAMTools SNP 72017 72017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D576%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C277%2C13%2C190%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43676 SAMTools SNP 72563 72563 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C69%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold43676 SAMTools SNP 72567 72567 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C25%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43676 SAMTools SNP 72600 72600 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43676 SAMTools SNP 79931 79931 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C39%2C0:75 scaffold43676 SAMTools SNP 80120 80120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C224%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43676 SAMTools SNP 80216 80216 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold43676 SAMTools SNP 80393 80393 44.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold43676 SAMTools SNP 80558 80558 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C60%2C0:99 scaffold43676 SAMTools SNP 81029 81029 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43676 SAMTools SNP 81103 81103 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.099%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43676 SAMTools SNP 81118 81118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 83555 83555 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C40%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43676 SAMTools SNP 86933 86933 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43676 SAMTools SNP 88744 88744 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.38%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold43676 SAMTools SNP 99948 99948 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43676 SAMTools SNP 101121 101121 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 102344 102344 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43676 SAMTools SNP 102345 102345 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43676 SAMTools SNP 102729 102729 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43676 SAMTools SNP 103448 103448 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43676 SAMTools SNP 104610 104610 98.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold43676 SAMTools SNP 104649 104649 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold43676 SAMTools SNP 105148 105148 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43676 SAMTools SNP 108763 108763 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold43676 SAMTools SNP 109837 109837 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold43676 SAMTools SNP 110110 110110 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 110116 110116 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 111137 111137 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold43676 SAMTools SNP 113190 113190 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43676 SAMTools SNP 113304 113304 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43676 SAMTools SNP 119091 119091 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43676 SAMTools SNP 124596 124596 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 124626 124626 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold43676 SAMTools SNP 124734 124734 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 126046 126046 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 126320 126320 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 131722 131722 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 133387 133387 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43676 SAMTools SNP 133507 133507 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43676 SAMTools SNP 133508 133508 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43676 SAMTools SNP 138319 138319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 138367 138367 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 138378 138378 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 144436 144436 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 144441 144441 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 151173 151173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 151175 151175 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 151935 151935 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43676 SAMTools SNP 152174 152174 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold43676 SAMTools SNP 152180 152180 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43676 SAMTools SNP 153238 153238 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold43676 SAMTools SNP 154484 154484 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold43676 SAMTools SNP 180552 180552 22.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold43676 SAMTools SNP 225972 225972 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold43676 SAMTools SNP 260259 260259 40.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold43676 SAMTools SNP 269877 269877 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C77:80 scaffold43676 SAMTools SNP 274539 274539 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43676 SAMTools SNP 277900 277900 30.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold43680 SAMTools SNP 9779 9779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 9892 9892 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 11775 11775 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold43680 SAMTools SNP 12208 12208 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold43680 SAMTools SNP 12248 12248 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43680 SAMTools SNP 17249 17249 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43680 SAMTools SNP 18607 18607 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C8.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C143:66 scaffold43680 SAMTools SNP 18864 18864 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.052%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C140:99 scaffold43680 SAMTools SNP 19781 19781 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43680 SAMTools SNP 21105 21105 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 21132 21132 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 21601 21601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C34%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43680 SAMTools SNP 21622 21622 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 22228 22228 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43680 SAMTools SNP 23808 23808 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold43680 SAMTools SNP 23883 23883 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold43680 SAMTools SNP 24186 24186 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 25648 25648 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43680 SAMTools SNP 25672 25672 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold43680 SAMTools SNP 26440 26440 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43680 SAMTools SNP 26457 26457 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43680 SAMTools SNP 26915 26915 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.46%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold43680 SAMTools SNP 26933 26933 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43680 SAMTools SNP 26984 26984 17.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold43680 SAMTools SNP 27192 27192 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 27224 27224 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 27817 27817 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43680 SAMTools SNP 28492 28492 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43680 SAMTools SNP 28503 28503 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43680 SAMTools SNP 29065 29065 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 31649 31649 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43680 SAMTools SNP 31689 31689 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold43680 SAMTools SNP 31836 31836 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43680 SAMTools SNP 32011 32011 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C4%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43680 SAMTools SNP 32020 32020 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.21%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43680 SAMTools SNP 32062 32062 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C26%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold43680 SAMTools SNP 32423 32423 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C20%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43680 SAMTools SNP 32460 32460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D42%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43680 SAMTools SNP 32934 32934 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D44%3BFQ%3D80%3BPV4%3D1%2C0.24%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C230:99 scaffold43680 SAMTools SNP 32967 32967 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C30%2C0:57 scaffold43680 SAMTools SNP 38867 38867 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43680 SAMTools SNP 41127 41127 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43680 SAMTools SNP 41145 41145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43680 SAMTools SNP 41331 41331 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43680 SAMTools SNP 41538 41538 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43680 SAMTools SNP 41568 41568 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43680 SAMTools SNP 42461 42461 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43680 SAMTools SNP 42702 42702 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.069%2C0.18%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold43680 SAMTools SNP 43147 43147 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold43680 SAMTools SNP 43159 43159 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C22%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold43680 SAMTools SNP 44154 44154 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C71:74 scaffold43680 SAMTools SNP 46427 46427 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43680 SAMTools SNP 47337 47337 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43680 SAMTools SNP 47378 47378 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C7%2C43%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 47576 47576 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C30%2C27%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D8.9e-05%2C4e-10%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43680 SAMTools SNP 48335 48335 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-05%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 49564 49564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C21%2C15%3BMQ%3D50%3BFQ%3D176%3BPV4%3D3.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold43680 SAMTools SNP 49831 49831 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1.7e-05%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43680 SAMTools SNP 49843 49843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C22%2C12%3BMQ%3D50%3BFQ%3D169%3BPV4%3D2.1e-05%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold43680 SAMTools SNP 49882 49882 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43680 SAMTools SNP 49900 49900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43680 SAMTools SNP 50282 50282 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43680 SAMTools SNP 50303 50303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43680 SAMTools SNP 50716 50716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43680 SAMTools SNP 54829 54829 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.035%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C147:99 scaffold43680 SAMTools SNP 54848 54848 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold43680 SAMTools SNP 55153 55153 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43680 SAMTools SNP 55155 55155 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 55162 55162 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 55481 55481 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold43680 SAMTools SNP 55586 55586 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43680 SAMTools SNP 59514 59514 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold43680 SAMTools SNP 60994 60994 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold43680 SAMTools SNP 65100 65100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C54%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 66482 66482 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.051%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C140:34 scaffold43680 SAMTools SNP 66709 66709 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.22%2C0.12%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold43680 SAMTools SNP 67277 67277 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C2%2C50%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C2.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold43680 SAMTools SNP 118773 118773 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43680 SAMTools SNP 119496 119496 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43680 SAMTools SNP 182499 182499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43680 SAMTools SNP 184349 184349 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold43680 SAMTools SNP 188798 188798 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold43680 SAMTools SNP 192946 192946 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.015%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold43680 SAMTools SNP 192955 192955 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C9%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43680 SAMTools SNP 193427 193427 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43680 SAMTools SNP 193448 193448 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.3%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43680 SAMTools SNP 193782 193782 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43680 SAMTools SNP 193827 193827 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43680 SAMTools SNP 194620 194620 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold43680 SAMTools SNP 194650 194650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43680 SAMTools SNP 195002 195002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43680 SAMTools SNP 195008 195008 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold43680 SAMTools SNP 195240 195240 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold43680 SAMTools SNP 195283 195283 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43680 SAMTools SNP 195722 195722 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold43680 SAMTools SNP 196392 196392 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43680 SAMTools SNP 197499 197499 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold43680 SAMTools SNP 197848 197848 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 197854 197854 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 198163 198163 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43680 SAMTools SNP 198464 198464 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold43680 SAMTools SNP 198768 198768 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43680 SAMTools SNP 198807 198807 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43680 SAMTools SNP 200104 200104 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 200149 200149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 200743 200743 153 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C69%2C183%2C0%2C177:33 scaffold43680 SAMTools SNP 200770 200770 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43680 SAMTools SNP 200778 200778 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold43680 SAMTools SNP 224347 224347 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 228551 228551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43680 SAMTools SNP 229278 229278 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43680 SAMTools SNP 230739 230739 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold43680 SAMTools SNP 230740 230740 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C49:52 scaffold43680 SAMTools SNP 230752 230752 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43680 SAMTools SNP 233367 233367 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43680 SAMTools SNP 246638 246638 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 246639 246639 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold43680 SAMTools SNP 247445 247445 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43680 SAMTools SNP 247704 247704 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43680 SAMTools SNP 247800 247800 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.24%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold43680 SAMTools SNP 248573 248573 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C54%2C49%3BMQ%3D50%3BFQ%3D-201%3BPV4%3D0.61%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C0:99 scaffold43680 SAMTools SNP 251085 251085 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43680 SAMTools SNP 253644 253644 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C154%2C15%2C69%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 255076 255076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C74%2C81%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 256601 256601 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C96%2C16%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 256662 256662 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C20%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C230:99 scaffold43680 SAMTools SNP 259606 259606 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C243:99 scaffold43680 SAMTools SNP 259984 259984 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43680 SAMTools SNP 260329 260329 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.13%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold43680 SAMTools SNP 260395 260395 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.32%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C232:99 scaffold43680 SAMTools SNP 261127 261127 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C0.46%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43680 SAMTools SNP 261192 261192 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43680 SAMTools SNP 262246 262246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43680 SAMTools SNP 262357 262357 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43680 SAMTools SNP 263707 263707 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold43680 SAMTools SNP 264636 264636 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43680 SAMTools SNP 274270 274270 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold43680 SAMTools SNP 277891 277891 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.27%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold43680 SAMTools SNP 277909 277909 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.24%2C0.29%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C203:99 scaffold43680 SAMTools SNP 280044 280044 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.19%2C0.079%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43680 SAMTools SNP 283593 283593 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.23%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold43686 SAMTools SNP 16371 16371 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43686 SAMTools SNP 16372 16372 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43686 SAMTools SNP 16435 16435 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 34037 34037 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C9.4e-07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C74:46 scaffold43686 SAMTools SNP 34273 34273 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C235:99 scaffold43686 SAMTools SNP 34339 34339 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold43686 SAMTools SNP 34883 34883 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold43686 SAMTools SNP 36454 36454 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43686 SAMTools SNP 36824 36824 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C30%2C0:53 scaffold43686 SAMTools SNP 41444 41444 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43686 SAMTools SNP 41629 41629 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C212:99 scaffold43686 SAMTools SNP 41935 41935 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.53%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43686 SAMTools SNP 41942 41942 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.54%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43686 SAMTools SNP 42194 42194 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C25%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 42502 42502 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43686 SAMTools SNP 43110 43110 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 43119 43119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C7%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43686 SAMTools SNP 43176 43176 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43686 SAMTools SNP 43830 43830 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C23%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 48205 48205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 48277 48277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C5%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0028%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43686 SAMTools SNP 48418 48418 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold43686 SAMTools SNP 48476 48476 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.3e-09%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43686 SAMTools SNP 48789 48789 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.092%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C156:99 scaffold43686 SAMTools SNP 48798 48798 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43686 SAMTools SNP 49005 49005 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43686 SAMTools SNP 49339 49339 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C21%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.033%2C0.0015%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43686 SAMTools SNP 49366 49366 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43686 SAMTools SNP 49452 49452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43686 SAMTools SNP 49999 49999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43686 SAMTools SNP 50029 50029 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43686 SAMTools SNP 50624 50624 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 50872 50872 165 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C189:99 scaffold43686 SAMTools SNP 51123 51123 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43686 SAMTools SNP 53662 53662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.36%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold43686 SAMTools SNP 53704 53704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43686 SAMTools SNP 53975 53975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43686 SAMTools SNP 55039 55039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 55088 55088 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0023%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43686 SAMTools SNP 55498 55498 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43686 SAMTools SNP 55502 55502 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43686 SAMTools SNP 55916 55916 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C27%2C0:51 scaffold43686 SAMTools SNP 55955 55955 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43686 SAMTools SNP 56334 56334 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 56405 56405 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43686 SAMTools SNP 57166 57166 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43686 SAMTools SNP 57421 57421 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C245:73 scaffold43686 SAMTools SNP 57751 57751 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C116:63 scaffold43686 SAMTools SNP 57805 57805 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.0032%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43686 SAMTools SNP 57850 57850 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 58901 58901 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43686 SAMTools SNP 59359 59359 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.39%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 59525 59525 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43686 SAMTools SNP 59537 59537 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.33%2C6.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold43686 SAMTools SNP 59576 59576 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.62%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43686 SAMTools SNP 59751 59751 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 60012 60012 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43686 SAMTools SNP 60018 60018 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold43686 SAMTools SNP 60159 60159 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C236:99 scaffold43686 SAMTools SNP 60170 60170 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.23%2C3.7e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43686 SAMTools SNP 60670 60670 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold43686 SAMTools SNP 60687 60687 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43686 SAMTools SNP 60703 60703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 60984 60984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43686 SAMTools SNP 61269 61269 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.55%2C0.059%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold43686 SAMTools SNP 62777 62777 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43686 SAMTools SNP 62780 62780 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.39%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43686 SAMTools SNP 62934 62934 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43686 SAMTools SNP 63185 63185 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43686 SAMTools SNP 63204 63204 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.43%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C171:99 scaffold43686 SAMTools SNP 63457 63457 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.1%2C4.6e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43686 SAMTools SNP 63875 63875 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43686 SAMTools SNP 63881 63881 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43686 SAMTools SNP 63911 63911 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.26%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43686 SAMTools SNP 64196 64196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.44%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold43686 SAMTools SNP 64217 64217 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold43686 SAMTools SNP 64489 64489 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C234:99 scaffold43686 SAMTools SNP 64557 64557 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43686 SAMTools SNP 64804 64804 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.14%2C0.16%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43686 SAMTools SNP 65340 65340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 66500 66500 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 66508 66508 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C28%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 67311 67311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 67655 67655 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.47%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43686 SAMTools SNP 211171 211171 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C63%2C0:99 scaffold43686 SAMTools SNP 211264 211264 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C111%2C0:99 scaffold43686 SAMTools SNP 211526 211526 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43686 SAMTools SNP 211615 211615 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.29%2C1.1e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43686 SAMTools SNP 219961 219961 24.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold43686 SAMTools SNP 220238 220238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43686 SAMTools SNP 220259 220259 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43686 SAMTools SNP 223083 223083 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.15%2C0.0015%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C210:99 scaffold43686 SAMTools SNP 223334 223334 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.5e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C248:42 scaffold43686 SAMTools SNP 223382 223382 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.078%2C6e-07%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43686 SAMTools SNP 224002 224002 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C11%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D5.3e-05%2C3e-07%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43686 SAMTools SNP 224666 224666 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43686 SAMTools SNP 224705 224705 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C9.5e-11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43686 SAMTools SNP 224998 224998 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C31%2C1%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C0.0014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43686 SAMTools SNP 225041 225041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 226905 226905 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 226938 226938 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.062%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43686 SAMTools SNP 228715 228715 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold43686 SAMTools SNP 229239 229239 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43686 SAMTools SNP 230152 230152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 230157 230157 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 230191 230191 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 231045 231045 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43686 SAMTools SNP 231512 231512 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43686 SAMTools SNP 239040 239040 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43686 SAMTools SNP 243208 243208 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold43686 SAMTools SNP 248456 248456 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43686 SAMTools SNP 254731 254731 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold43686 SAMTools SNP 254740 254740 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43686 SAMTools SNP 256084 256084 7.59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43686 SAMTools SNP 256634 256634 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43686 SAMTools SNP 256671 256671 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43686 SAMTools SNP 256891 256891 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43692 SAMTools SNP 265 265 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43692 SAMTools SNP 309 309 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43692 SAMTools SNP 2744 2744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D783%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C393%2C86%2C213%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 3411 3411 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C105%2C2%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00098%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 3934 3934 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C63%2C0%2C51%3BMQ%3D50%3BFQ%3D202%3BPV4%3D2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43692 SAMTools SNP 4362 4362 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C19%2C8%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.73%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43692 SAMTools SNP 4378 4378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C24%2C53%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 5752 5752 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C70%2C3%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00073%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 8748 8748 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C74%2C2%2C15%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.29%2C0.42%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43692 SAMTools SNP 8810 8810 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C33%2C9%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold43692 SAMTools SNP 10412 10412 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C44%2C24%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 11339 11339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C159%2C24%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 11519 11519 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C37%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C4.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 11524 11524 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C41%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 13867 13867 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C123%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43692 SAMTools SNP 19089 19089 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C89%3BMQ%3D50%3BFQ%3D-271%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43692 SAMTools SNP 19250 19250 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43692 SAMTools SNP 19860 19860 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 20654 20654 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43692 SAMTools SNP 22230 22230 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43692 SAMTools SNP 24540 24540 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43692 SAMTools SNP 24564 24564 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C56%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold43692 SAMTools SNP 24618 24618 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C81%3BMQ%3D50%3BFQ%3D-252%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C225%2C0:99 scaffold43692 SAMTools SNP 25876 25876 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43692 SAMTools SNP 25884 25884 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43692 SAMTools SNP 29944 29944 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43692 SAMTools SNP 32833 32833 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C22%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.021%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold43692 SAMTools SNP 32839 32839 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43692 SAMTools SNP 32956 32956 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.5%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold43692 SAMTools SNP 33534 33534 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C19%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C102%2C0:99 scaffold43692 SAMTools SNP 33567 33567 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C205:99 scaffold43692 SAMTools SNP 34323 34323 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C234:85 scaffold43692 SAMTools SNP 34338 34338 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold43692 SAMTools SNP 34362 34362 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.083%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43692 SAMTools SNP 34723 34723 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.19%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43692 SAMTools SNP 34765 34765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43692 SAMTools SNP 35347 35347 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C0.013%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43692 SAMTools SNP 35353 35353 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C149:99 scaffold43692 SAMTools SNP 36257 36257 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold43692 SAMTools SNP 36404 36404 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43692 SAMTools SNP 41354 41354 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43692 SAMTools SNP 42196 42196 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold43692 SAMTools SNP 43531 43531 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43692 SAMTools SNP 43538 43538 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43692 SAMTools SNP 43571 43571 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C237:99 scaffold43692 SAMTools SNP 44792 44792 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.47%2C0.071%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C251:68 scaffold43692 SAMTools SNP 45087 45087 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.12%2C1%2C1.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold43692 SAMTools SNP 45239 45239 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43692 SAMTools SNP 46936 46936 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C12%2C5%3BMQ%3D46%3BFQ%3D199%3BPV4%3D0.73%2C0.16%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43692 SAMTools SNP 47633 47633 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C13%3BMQ%3D49%3BFQ%3D206%3BPV4%3D0.23%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold43692 SAMTools SNP 52093 52093 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 53120 53120 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C148:99 scaffold43692 SAMTools SNP 53187 53187 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.14%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43692 SAMTools SNP 53882 53882 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.24%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43692 SAMTools SNP 54512 54512 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 54681 54681 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43692 SAMTools SNP 54695 54695 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43692 SAMTools SNP 54745 54745 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43692 SAMTools SNP 54979 54979 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold43692 SAMTools SNP 56472 56472 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 58510 58510 3.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C27:27 scaffold43692 SAMTools SNP 58517 58517 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43692 SAMTools SNP 58563 58563 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43692 SAMTools SNP 58770 58770 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43692 SAMTools SNP 59261 59261 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43692 SAMTools SNP 59504 59504 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.5%2C3.4e-16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43692 SAMTools SNP 63819 63819 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43692 SAMTools SNP 68805 68805 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D0.42%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C73:70 scaffold43692 SAMTools SNP 69583 69583 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.00023%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43692 SAMTools SNP 69700 69700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C28%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.39%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold43692 SAMTools SNP 70520 70520 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43692 SAMTools SNP 72089 72089 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold43692 SAMTools SNP 72131 72131 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C163:89 scaffold43692 SAMTools SNP 75326 75326 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43692 SAMTools SNP 75497 75497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43692 SAMTools SNP 76244 76244 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43692 SAMTools SNP 76267 76267 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43692 SAMTools SNP 77059 77059 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43692 SAMTools SNP 77713 77713 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43692 SAMTools SNP 77753 77753 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C11%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.53%2C2.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43692 SAMTools SNP 77834 77834 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43692 SAMTools SNP 78021 78021 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.42%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold43692 SAMTools SNP 78048 78048 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.18%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold43692 SAMTools SNP 82623 82623 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 82952 82952 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43692 SAMTools SNP 83413 83413 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43692 SAMTools SNP 83443 83443 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold43692 SAMTools SNP 93740 93740 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C25%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43692 SAMTools SNP 93836 93836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43692 SAMTools SNP 93849 93849 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold43692 SAMTools SNP 96841 96841 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43692 SAMTools SNP 97320 97320 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43692 SAMTools SNP 98576 98576 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 98588 98588 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 98938 98938 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 99310 99310 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C21%2C0:39 scaffold43692 SAMTools SNP 99391 99391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43692 SAMTools SNP 99735 99735 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43692 SAMTools SNP 110087 110087 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43692 SAMTools SNP 110775 110775 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 110819 110819 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 110861 110861 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43692 SAMTools SNP 110886 110886 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43692 SAMTools SNP 114202 114202 58.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold43692 SAMTools SNP 115942 115942 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 117258 117258 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 130394 130394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43692 SAMTools SNP 130424 130424 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43692 SAMTools SNP 130658 130658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 130796 130796 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 130907 130907 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43692 SAMTools SNP 156788 156788 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold43692 SAMTools SNP 203293 203293 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C255%2C0:99 scaffold43692 SAMTools SNP 203346 203346 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43692 SAMTools SNP 203450 203450 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C54%2C0:85 scaffold43692 SAMTools SNP 205149 205149 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C4.1e-05%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold43692 SAMTools SNP 205195 205195 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43692 SAMTools SNP 208371 208371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43692 SAMTools SNP 211879 211879 4.76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D3%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C69%2C0:42 scaffold43692 SAMTools SNP 216064 216064 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C33%3BMQ%3D27%3BFQ%3D-99%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C72%2C0:99 scaffold43692 SAMTools SNP 216120 216120 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43692 SAMTools SNP 217154 217154 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold43692 SAMTools SNP 220510 220510 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1312%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C581%2C584%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43692 SAMTools SNP 220912 220912 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C30%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 222063 222063 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D795%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C238%2C178%2C228%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 223498 223498 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43692 SAMTools SNP 223524 223524 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43692 SAMTools SNP 224531 224531 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1401%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D467%2C248%2C283%2C194%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 230456 230456 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C67%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 232697 232697 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C224:99 scaffold43692 SAMTools SNP 234887 234887 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43692 SAMTools SNP 234893 234893 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43692 SAMTools SNP 238137 238137 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43692 SAMTools SNP 250150 250150 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold43692 SAMTools SNP 259094 259094 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43692 SAMTools SNP 259351 259351 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43692 SAMTools SNP 259363 259363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43692 SAMTools SNP 259423 259423 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43692 SAMTools SNP 259510 259510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43692 SAMTools SNP 259525 259525 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43692 SAMTools SNP 261414 261414 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43692 SAMTools SNP 261537 261537 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.55%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43692 SAMTools SNP 261576 261576 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C6%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0048%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43692 SAMTools SNP 261902 261902 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C96:99 scaffold43692 SAMTools SNP 261995 261995 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43692 SAMTools SNP 262413 262413 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43692 SAMTools SNP 262578 262578 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0028%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43692 SAMTools SNP 262875 262875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C30%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43692 SAMTools SNP 263084 263084 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43692 SAMTools SNP 263293 263293 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43692 SAMTools SNP 263500 263500 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C22%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold43692 SAMTools SNP 263674 263674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C38%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43692 SAMTools SNP 263916 263916 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43692 SAMTools SNP 263952 263952 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1.7e-11%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43692 SAMTools SNP 263970 263970 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43692 SAMTools SNP 264356 264356 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C0%2C69%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.49%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold43692 SAMTools SNP 264380 264380 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43692 SAMTools SNP 265117 265117 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43692 SAMTools SNP 265136 265136 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43692 SAMTools SNP 266411 266411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43692 SAMTools SNP 266426 266426 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43692 SAMTools SNP 266440 266440 30.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold43692 SAMTools SNP 266474 266474 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C27%2C0:50 scaffold43692 SAMTools SNP 268122 268122 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43692 SAMTools SNP 268125 268125 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43692 SAMTools SNP 268139 268139 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.14%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C137:58 scaffold43692 SAMTools SNP 268143 268143 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43692 SAMTools SNP 268176 268176 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00017%2C1%2C1%2C2.1e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C236:99 scaffold43692 SAMTools SNP 268221 268221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C14%2C22%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0045%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold43692 SAMTools SNP 269012 269012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43692 SAMTools SNP 269021 269021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43692 SAMTools SNP 269409 269409 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C12:15 scaffold43692 SAMTools SNP 269427 269427 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43692 SAMTools SNP 269802 269802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43692 SAMTools SNP 269934 269934 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43692 SAMTools SNP 270257 270257 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43692 SAMTools SNP 270280 270280 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43692 SAMTools SNP 270301 270301 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 280301 280301 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43692 SAMTools SNP 286239 286239 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold43692 SAMTools SNP 286759 286759 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.002%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C155:54 scaffold43692 SAMTools SNP 286888 286888 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0059%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C114:34 scaffold43692 SAMTools SNP 287379 287379 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 287427 287427 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 287874 287874 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 287892 287892 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 288685 288685 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 288712 288712 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43692 SAMTools SNP 289386 289386 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43692 SAMTools SNP 289395 289395 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43696 SAMTools SNP 7599 7599 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43696 SAMTools SNP 7611 7611 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43696 SAMTools SNP 7755 7755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43696 SAMTools SNP 7812 7812 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.055%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C37:40 scaffold43696 SAMTools SNP 10932 10932 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold43696 SAMTools SNP 12207 12207 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43696 SAMTools SNP 31472 31472 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43696 SAMTools SNP 35615 35615 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43696 SAMTools SNP 37313 37313 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43696 SAMTools SNP 37385 37385 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43696 SAMTools SNP 37438 37438 9.49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold43696 SAMTools SNP 37567 37567 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C3.8e-05%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43696 SAMTools SNP 37661 37661 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold43696 SAMTools SNP 44247 44247 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43696 SAMTools SNP 44272 44272 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43696 SAMTools SNP 44849 44849 98.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold43696 SAMTools SNP 49633 49633 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold43696 SAMTools SNP 50150 50150 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43696 SAMTools SNP 51225 51225 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold43696 SAMTools SNP 51228 51228 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43696 SAMTools SNP 51789 51789 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold43696 SAMTools SNP 56369 56369 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43696 SAMTools SNP 56385 56385 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43696 SAMTools SNP 60192 60192 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43696 SAMTools SNP 66318 66318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43696 SAMTools SNP 66609 66609 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.082%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43696 SAMTools SNP 66611 66611 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43696 SAMTools SNP 67289 67289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43696 SAMTools SNP 68597 68597 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43696 SAMTools SNP 68639 68639 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43696 SAMTools SNP 68648 68648 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43696 SAMTools SNP 69528 69528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43696 SAMTools SNP 69531 69531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43696 SAMTools SNP 70615 70615 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43696 SAMTools SNP 70645 70645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43696 SAMTools SNP 70904 70904 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43696 SAMTools SNP 71019 71019 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43696 SAMTools SNP 100901 100901 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.00013%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C187:69 scaffold43696 SAMTools SNP 101403 101403 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43696 SAMTools SNP 102805 102805 35.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold43696 SAMTools SNP 103613 103613 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.58%2C2.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43696 SAMTools SNP 103656 103656 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C20%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0094%2C1.9e-12%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43696 SAMTools SNP 103876 103876 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C58%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold43696 SAMTools SNP 104521 104521 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43696 SAMTools SNP 136478 136478 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold43696 SAMTools SNP 142719 142719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43696 SAMTools SNP 142770 142770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43696 SAMTools SNP 143912 143912 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C27%2C0:51 scaffold43696 SAMTools SNP 144938 144938 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.0011%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C80:58 scaffold43696 SAMTools SNP 145984 145984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43696 SAMTools SNP 146058 146058 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43696 SAMTools SNP 147593 147593 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43696 SAMTools SNP 155221 155221 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43696 SAMTools SNP 158657 158657 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43696 SAMTools SNP 158686 158686 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0222%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00042%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43696 SAMTools SNP 164108 164108 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43696 SAMTools SNP 172280 172280 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43696 SAMTools SNP 188788 188788 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43696 SAMTools SNP 192236 192236 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C16%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43696 SAMTools SNP 227920 227920 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43696 SAMTools SNP 262694 262694 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43696 SAMTools SNP 268319 268319 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43696 SAMTools SNP 270733 270733 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43696 SAMTools SNP 290250 290250 41.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold43702 SAMTools SNP 13515 13515 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 13590 13590 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C5.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43702 SAMTools SNP 15207 15207 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43702 SAMTools SNP 15255 15255 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold43702 SAMTools SNP 15317 15317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 15472 15472 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43702 SAMTools SNP 15583 15583 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.4%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43702 SAMTools SNP 15589 15589 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold43702 SAMTools SNP 15961 15961 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43702 SAMTools SNP 16024 16024 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43702 SAMTools SNP 17011 17011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43702 SAMTools SNP 17014 17014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43702 SAMTools SNP 17426 17426 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43702 SAMTools SNP 17489 17489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43702 SAMTools SNP 17636 17636 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold43702 SAMTools SNP 17698 17698 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold43702 SAMTools SNP 18097 18097 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43702 SAMTools SNP 18525 18525 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C35:38 scaffold43702 SAMTools SNP 18528 18528 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43702 SAMTools SNP 18549 18549 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43702 SAMTools SNP 18621 18621 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43702 SAMTools SNP 19386 19386 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43702 SAMTools SNP 19394 19394 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C221:94 scaffold43702 SAMTools SNP 19433 19433 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C8%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.1e-05%2C0.066%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43702 SAMTools SNP 19737 19737 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0017%2C1%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C105:99 scaffold43702 SAMTools SNP 19851 19851 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43702 SAMTools SNP 19858 19858 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43702 SAMTools SNP 19913 19913 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.00046%2C0.28%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold43702 SAMTools SNP 20720 20720 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43702 SAMTools SNP 22520 22520 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.031%2C8.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C144:79 scaffold43702 SAMTools SNP 31354 31354 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C108%2C0:99 scaffold43702 SAMTools SNP 31435 31435 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43702 SAMTools SNP 32947 32947 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C0%2C35%3BMQ%3D47%3BFQ%3D224%3BPV4%3D9.6e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43702 SAMTools SNP 32988 32988 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D42%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43702 SAMTools SNP 33004 33004 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D40%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C51%2C0:99 scaffold43702 SAMTools SNP 35683 35683 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43702 SAMTools SNP 37269 37269 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C4%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43702 SAMTools SNP 37296 37296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43702 SAMTools SNP 39295 39295 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C116:37 scaffold43702 SAMTools SNP 39555 39555 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C13%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D0.39%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold43702 SAMTools SNP 42232 42232 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43702 SAMTools SNP 42244 42244 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43702 SAMTools SNP 43095 43095 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 43269 43269 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43702 SAMTools SNP 45108 45108 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C4%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-09%2C1%2C1%2C6.3e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 45687 45687 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43702 SAMTools SNP 46160 46160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C61%2C63%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 46243 46243 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C85%2C19%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 46586 46586 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43702 SAMTools SNP 46689 46689 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C27%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43702 SAMTools SNP 47108 47108 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43702 SAMTools SNP 59491 59491 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C3.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43702 SAMTools SNP 59757 59757 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 60767 60767 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C222:34 scaffold43702 SAMTools SNP 61854 61854 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 61911 61911 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C12%2C0:21 scaffold43702 SAMTools SNP 61950 61950 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 62847 62847 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43702 SAMTools SNP 66172 66172 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43702 SAMTools SNP 66759 66759 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C145:56 scaffold43702 SAMTools SNP 67264 67264 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 72930 72930 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 74128 74128 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C61%2C11%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D5.9e-05%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43702 SAMTools SNP 74175 74175 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43702 SAMTools SNP 74198 74198 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C51%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 77669 77669 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold43702 SAMTools SNP 77689 77689 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C19%2C8%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold43702 SAMTools SNP 108769 108769 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 109659 109659 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 109677 109677 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 110859 110859 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43702 SAMTools SNP 111825 111825 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43702 SAMTools SNP 112130 112130 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold43702 SAMTools SNP 116491 116491 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 116943 116943 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 117736 117736 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43702 SAMTools SNP 121415 121415 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 121453 121453 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.046%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold43702 SAMTools SNP 121471 121471 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43702 SAMTools SNP 122399 122399 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43702 SAMTools SNP 123129 123129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 123351 123351 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.031%2C5.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold43702 SAMTools SNP 123699 123699 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43702 SAMTools SNP 123886 123886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43702 SAMTools SNP 124167 124167 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C240:99 scaffold43702 SAMTools SNP 124185 124185 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.37%2C0.2%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C242:99 scaffold43702 SAMTools SNP 125217 125217 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43702 SAMTools SNP 125223 125223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43702 SAMTools SNP 125283 125283 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C26%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C3.4e-30%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C212:79 scaffold43702 SAMTools SNP 125474 125474 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43702 SAMTools SNP 125488 125488 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C215:99 scaffold43702 SAMTools SNP 125695 125695 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43702 SAMTools SNP 125747 125747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C29%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43702 SAMTools SNP 126783 126783 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C53%2C23%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 129693 129693 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.37%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold43702 SAMTools SNP 129714 129714 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold43702 SAMTools SNP 129747 129747 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C179:99 scaffold43702 SAMTools SNP 130936 130936 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43702 SAMTools SNP 131797 131797 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C12%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43702 SAMTools SNP 131832 131832 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43702 SAMTools SNP 132365 132365 41.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold43702 SAMTools SNP 132501 132501 49.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold43702 SAMTools SNP 135234 135234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C294%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43702 SAMTools SNP 136223 136223 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43702 SAMTools SNP 136265 136265 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 136926 136926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C133%2C1%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.33%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43702 SAMTools SNP 137622 137622 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 137682 137682 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43702 SAMTools SNP 137746 137746 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 138455 138455 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold43702 SAMTools SNP 141148 141148 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C14%3BMQ%3D41%3BFQ%3D9.53%3BPV4%3D1%2C5.4e-27%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C194:37 scaffold43702 SAMTools SNP 144358 144358 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43702 SAMTools SNP 144451 144451 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43702 SAMTools SNP 144854 144854 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold43702 SAMTools SNP 144876 144876 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C173:47 scaffold43702 SAMTools SNP 144930 144930 23.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold43702 SAMTools SNP 145772 145772 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43702 SAMTools SNP 157979 157979 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43702 SAMTools SNP 162214 162214 99 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C30%2C0%2C121%2C9%2C118:57 scaffold43702 SAMTools SNP 162324 162324 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D34%3BPV4%3D4.7e-05%2C4.5e-52%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C251:64 scaffold43702 SAMTools SNP 162759 162759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C18%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold43702 SAMTools SNP 177929 177929 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43702 SAMTools SNP 197959 197959 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43702 SAMTools SNP 198466 198466 56.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold43702 SAMTools SNP 211360 211360 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C30:32 scaffold43702 SAMTools SNP 213026 213026 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43702 SAMTools SNP 231610 231610 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold43702 SAMTools SNP 231965 231965 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0028%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C150:55 scaffold43702 SAMTools SNP 232943 232943 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43702 SAMTools SNP 289033 289033 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold43708 SAMTools SNP 265 265 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 301 301 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold43708 SAMTools SNP 341 341 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43708 SAMTools SNP 3257 3257 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.075%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C184:76 scaffold43708 SAMTools SNP 3260 3260 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C27%2C0:51 scaffold43708 SAMTools SNP 3263 3263 117 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C60%2C45%2C147%2C0%2C141:27 scaffold43708 SAMTools SNP 3458 3458 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 5007 5007 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C21%2C7%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43708 SAMTools SNP 5067 5067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C23%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43708 SAMTools SNP 5358 5358 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43708 SAMTools SNP 5774 5774 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C25%2C17%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.63%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 6272 6272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C13%2C29%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.35%2C0.24%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 8170 8170 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43708 SAMTools SNP 8171 8171 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43708 SAMTools SNP 8328 8328 17.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold43708 SAMTools SNP 10381 10381 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C97:42 scaffold43708 SAMTools SNP 12260 12260 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C51%2C22%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 13843 13843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C89%2C34%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 14214 14214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C118%2C9%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 14286 14286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43708 SAMTools SNP 14493 14493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C45%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold43708 SAMTools SNP 14592 14592 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43708 SAMTools SNP 14612 14612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C45%2C60%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43708 SAMTools SNP 17686 17686 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C22%2C18%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 17713 17713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C65%2C29%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 18129 18129 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43708 SAMTools SNP 22044 22044 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C79%2C23%2C2%3BMQ%3D49%3BFQ%3D30%3BPV4%3D1.5e-05%2C1%2C0.0096%2C9.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43708 SAMTools SNP 22061 22061 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C77%2C123%2C19%3BMQ%3D48%3BFQ%3D225%3BPV4%3D5.3e-05%2C1.3e-05%2C0.22%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 22090 22090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D183%2C44%2C202%2C12%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 30041 30041 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00014%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C35:38 scaffold43708 SAMTools SNP 31739 31739 33.5 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C26%2C14%2C61%2C0%2C58:21 scaffold43708 SAMTools SNP 33677 33677 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C3%2C16%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.029%2C0.00031%2C1%2C1.9e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43708 SAMTools SNP 33722 33722 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.053%2C4.4e-05%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43708 SAMTools SNP 33788 33788 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C81%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C247%2C0:99 scaffold43708 SAMTools SNP 34122 34122 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43708 SAMTools SNP 37926 37926 5.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D17%3BFQ%3D-31%3BPV4%3D0.22%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C4%2C0:4 scaffold43708 SAMTools SNP 39197 39197 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C24:28 scaffold43708 SAMTools SNP 39762 39762 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43708 SAMTools SNP 47437 47437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C158%2C13%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 47441 47441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C80%2C4%2C158%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 57473 57473 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C81%2C0%2C163%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43708 SAMTools SNP 67955 67955 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 69400 69400 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C11%3BMQ%3D45%3BFQ%3D148%3BPV4%3D0.074%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C175:99 scaffold43708 SAMTools SNP 72174 72174 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D42%3BFQ%3D40%3BPV4%3D1%2C0.091%2C0.45%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C192:70 scaffold43708 SAMTools SNP 78309 78309 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 79071 79071 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 79094 79094 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43708 SAMTools SNP 81340 81340 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43708 SAMTools SNP 82084 82084 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 82104 82104 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 85858 85858 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.018%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold43708 SAMTools SNP 87104 87104 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C236:99 scaffold43708 SAMTools SNP 87837 87837 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43708 SAMTools SNP 91820 91820 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C41:44 scaffold43708 SAMTools SNP 98824 98824 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C42%2C0:81 scaffold43708 SAMTools SNP 98861 98861 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43708 SAMTools SNP 100555 100555 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C3%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43708 SAMTools SNP 100564 100564 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C56%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43708 SAMTools SNP 100915 100915 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C51%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C0.22%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold43708 SAMTools SNP 100977 100977 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.17%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold43708 SAMTools SNP 117494 117494 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D20%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C93%2C0:99 scaffold43708 SAMTools SNP 118600 118600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 119092 119092 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 120758 120758 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43708 SAMTools SNP 120767 120767 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43708 SAMTools SNP 120786 120786 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C12%3BMQ%3D48%3BFQ%3D224%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43708 SAMTools SNP 121554 121554 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.091%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43708 SAMTools SNP 122286 122286 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D45%3BFQ%3D119%3BPV4%3D1%2C0.21%2C0.14%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C146:99 scaffold43708 SAMTools SNP 122674 122674 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43708 SAMTools SNP 143778 143778 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43708 SAMTools SNP 147406 147406 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C53%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C0.33%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 147448 147448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C12%2C12%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.8%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 147457 147457 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C11%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.33%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 147829 147829 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C0%3BMQ%3D45%3BFQ%3D75%3BPV4%3D0.0048%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C102:99 scaffold43708 SAMTools SNP 148012 148012 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C0.12%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43708 SAMTools SNP 148050 148050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C6%3BMQ%3D49%3BFQ%3D164%3BPV4%3D0.057%2C1%2C0.23%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold43708 SAMTools SNP 148325 148325 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C13%3BMQ%3D49%3BFQ%3D204%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold43708 SAMTools SNP 173510 173510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C19%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43708 SAMTools SNP 173531 173531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C34%2C13%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold43708 SAMTools SNP 173576 173576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C32%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.022%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold43708 SAMTools SNP 173595 173595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C40%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold43708 SAMTools SNP 174060 174060 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43708 SAMTools SNP 174087 174087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold43708 SAMTools SNP 174117 174117 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43708 SAMTools SNP 174153 174153 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold43708 SAMTools SNP 176735 176735 55.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold43708 SAMTools SNP 176756 176756 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C74:57 scaffold43708 SAMTools SNP 176923 176923 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold43708 SAMTools SNP 177509 177509 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 177525 177525 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43708 SAMTools SNP 178007 178007 61.3 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C20%2C5%2C87%2C0%2C84:27 scaffold43708 SAMTools SNP 178453 178453 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.29%2C2.2e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold43708 SAMTools SNP 178666 178666 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43708 SAMTools SNP 178699 178699 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43708 SAMTools SNP 178841 178841 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43708 SAMTools SNP 178882 178882 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43708 SAMTools SNP 179103 179103 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43708 SAMTools SNP 179107 179107 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43708 SAMTools SNP 179148 179148 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 183160 183160 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 183239 183239 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43708 SAMTools SNP 183282 183282 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C242:99 scaffold43708 SAMTools SNP 183907 183907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43708 SAMTools SNP 184073 184073 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43708 SAMTools SNP 185698 185698 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C17%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.14%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold43708 SAMTools SNP 185707 185707 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43708 SAMTools SNP 194073 194073 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43708 SAMTools SNP 194129 194129 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43708 SAMTools SNP 196009 196009 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.5e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C63:66 scaffold43708 SAMTools SNP 196078 196078 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold43708 SAMTools SNP 224110 224110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43708 SAMTools SNP 241922 241922 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C49%2C126%2C34%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.71%2C1.6e-164%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43708 SAMTools SNP 242214 242214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C109%2C2%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 243934 243934 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C24%2C0:45 scaffold43708 SAMTools SNP 243987 243987 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C72%2C0:99 scaffold43708 SAMTools SNP 245560 245560 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.46%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C95:98 scaffold43708 SAMTools SNP 246143 246143 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.37%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C190:99 scaffold43708 SAMTools SNP 247132 247132 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43708 SAMTools SNP 247135 247135 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43708 SAMTools SNP 247153 247153 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold43708 SAMTools SNP 247180 247180 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.23%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold43708 SAMTools SNP 247186 247186 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold43708 SAMTools SNP 247817 247817 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43708 SAMTools SNP 256951 256951 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43708 SAMTools SNP 256962 256962 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C12%2C0:21 scaffold43708 SAMTools SNP 258352 258352 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold43708 SAMTools SNP 262483 262483 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C178:99 scaffold43708 SAMTools SNP 263653 263653 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 266269 266269 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43708 SAMTools SNP 266532 266532 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.22%2C0.077%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43708 SAMTools SNP 266537 266537 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.55%2C0.087%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C253:99 scaffold43708 SAMTools SNP 266543 266543 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C236:99 scaffold43708 SAMTools SNP 267421 267421 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43708 SAMTools SNP 267430 267430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C11%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.34%2C0.13%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold43708 SAMTools SNP 267436 267436 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43708 SAMTools SNP 267498 267498 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 268423 268423 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 268458 268458 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C29:32 scaffold43708 SAMTools SNP 268468 268468 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43708 SAMTools SNP 268858 268858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43708 SAMTools SNP 268864 268864 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43708 SAMTools SNP 268999 268999 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold43708 SAMTools SNP 269035 269035 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43708 SAMTools SNP 269044 269044 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold43708 SAMTools SNP 272732 272732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43708 SAMTools SNP 274080 274080 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C22:25 scaffold43708 SAMTools SNP 274116 274116 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C230:99 scaffold43708 SAMTools SNP 274803 274803 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43708 SAMTools SNP 274812 274812 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold43708 SAMTools SNP 275427 275427 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43708 SAMTools SNP 276113 276113 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C231:60 scaffold43708 SAMTools SNP 276123 276123 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.43%2C5e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C121:86 scaffold43708 SAMTools SNP 276150 276150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43708 SAMTools SNP 276156 276156 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43708 SAMTools SNP 276536 276536 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C0.17%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C149:99 scaffold43708 SAMTools SNP 276539 276539 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.015%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C157:99 scaffold43708 SAMTools SNP 280616 280616 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.32%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43708 SAMTools SNP 283136 283136 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 283147 283147 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43708 SAMTools SNP 283871 283871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43708 SAMTools SNP 284740 284740 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43708 SAMTools SNP 284755 284755 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold43708 SAMTools SNP 284761 284761 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43708 SAMTools SNP 284879 284879 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C127:99 scaffold43708 SAMTools SNP 285066 285066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43708 SAMTools SNP 285075 285075 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43708 SAMTools SNP 285254 285254 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43708 SAMTools SNP 285269 285269 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43708 SAMTools SNP 285290 285290 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43708 SAMTools SNP 285615 285615 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43708 SAMTools SNP 285661 285661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43708 SAMTools SNP 285706 285706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C6%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43708 SAMTools SNP 285947 285947 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.042%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43708 SAMTools SNP 286013 286013 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold43708 SAMTools SNP 286100 286100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43708 SAMTools SNP 286561 286561 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C181:99 scaffold43708 SAMTools SNP 286612 286612 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43708 SAMTools SNP 286615 286615 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43708 SAMTools SNP 286645 286645 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 287092 287092 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C221:99 scaffold43708 SAMTools SNP 287146 287146 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43708 SAMTools SNP 287209 287209 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.14%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold43708 SAMTools SNP 287469 287469 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.0043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43708 SAMTools SNP 287792 287792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43708 SAMTools SNP 287867 287867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C37%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43708 SAMTools SNP 288467 288467 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold43708 SAMTools SNP 288696 288696 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43708 SAMTools SNP 289612 289612 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 289640 289640 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43708 SAMTools SNP 290440 290440 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 291825 291825 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43708 SAMTools SNP 292161 292161 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43708 SAMTools SNP 292183 292183 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.27%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43708 SAMTools SNP 292646 292646 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.27%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold43708 SAMTools SNP 292667 292667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43708 SAMTools SNP 293088 293088 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.11%2C0.0072%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43708 SAMTools SNP 293093 293093 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0175%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43708 SAMTools SNP 293169 293169 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C222:99 scaffold43708 SAMTools SNP 293424 293424 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C195:99 scaffold43708 SAMTools SNP 293468 293468 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.42%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43708 SAMTools SNP 293908 293908 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43708 SAMTools SNP 293913 293913 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43708 SAMTools SNP 294400 294400 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold43708 SAMTools SNP 294429 294429 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold43708 SAMTools SNP 294480 294480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 294907 294907 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.22%2C0.33%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold43708 SAMTools SNP 294924 294924 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43708 SAMTools SNP 295342 295342 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43708 SAMTools SNP 295416 295416 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43708 SAMTools SNP 295842 295842 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43708 SAMTools SNP 296352 296352 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43708 SAMTools SNP 297496 297496 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43708 SAMTools SNP 297651 297651 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43708 SAMTools SNP 299059 299059 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 299844 299844 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43708 SAMTools SNP 299880 299880 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 300614 300614 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43708 SAMTools SNP 300620 300620 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43708 SAMTools SNP 300660 300660 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43708 SAMTools SNP 300892 300892 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold43708 SAMTools SNP 300900 300900 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.082%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold43708 SAMTools SNP 301523 301523 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C242:99 scaffold43708 SAMTools SNP 301533 301533 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C242:99 scaffold43708 SAMTools SNP 301679 301679 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43708 SAMTools SNP 302899 302899 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C33%2C0%2C33%3BMQ%3D50%3BFQ%3D198%3BPV4%3D5.5e-06%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43708 SAMTools SNP 302905 302905 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C37%2C0%2C31%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.00016%2C8.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold43708 SAMTools SNP 302910 302910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C3%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.16%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43708 SAMTools SNP 303288 303288 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C7%3BMQ%3D44%3BFQ%3D154%3BPV4%3D0.21%2C1%2C0.17%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C191:99 scaffold43708 SAMTools SNP 304848 304848 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C12%3BMQ%3D46%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C214:99 scaffold43708 SAMTools SNP 305589 305589 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43708 SAMTools SNP 305617 305617 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43708 SAMTools SNP 305913 305913 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43708 SAMTools SNP 306723 306723 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D46%3BFQ%3D150%3BPV4%3D1%2C0.015%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C212:99 scaffold43726 SAMTools SNP 48819 48819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 60252 60252 3.55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43726 SAMTools SNP 62271 62271 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C87%2C0:99 scaffold43726 SAMTools SNP 86796 86796 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold43726 SAMTools SNP 105730 105730 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0027%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C167:30 scaffold43726 SAMTools SNP 107163 107163 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.25%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43726 SAMTools SNP 108907 108907 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43726 SAMTools SNP 147905 147905 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold43726 SAMTools SNP 148506 148506 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C229%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43726 SAMTools SNP 148537 148537 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C83%2C9%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 149413 149413 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1379%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C717%2C0%2C651%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 152894 152894 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43726 SAMTools SNP 171895 171895 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 172180 172180 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43726 SAMTools SNP 172192 172192 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43726 SAMTools SNP 172666 172666 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43726 SAMTools SNP 172801 172801 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43726 SAMTools SNP 174728 174728 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0010%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C202:30 scaffold43726 SAMTools SNP 175259 175259 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold43726 SAMTools SNP 176031 176031 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C193:99 scaffold43726 SAMTools SNP 176431 176431 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43726 SAMTools SNP 176536 176536 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 176673 176673 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43726 SAMTools SNP 176715 176715 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43726 SAMTools SNP 177806 177806 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold43726 SAMTools SNP 182812 182812 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43726 SAMTools SNP 183014 183014 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C198:99 scaffold43726 SAMTools SNP 185002 185002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 185062 185062 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43726 SAMTools SNP 190665 190665 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.086%2C3.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43726 SAMTools SNP 227205 227205 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 228657 228657 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 234247 234247 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C2%2C21%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold43726 SAMTools SNP 234739 234739 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 235762 235762 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold43726 SAMTools SNP 238716 238716 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43726 SAMTools SNP 238731 238731 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.0014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43726 SAMTools SNP 238758 238758 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43726 SAMTools SNP 284997 284997 39.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold43726 SAMTools SNP 286145 286145 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43726 SAMTools SNP 286194 286194 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43726 SAMTools SNP 287183 287183 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43726 SAMTools SNP 287203 287203 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43726 SAMTools SNP 288879 288879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 289072 289072 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43726 SAMTools SNP 289436 289436 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C0%2C17%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold43726 SAMTools SNP 293057 293057 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D0.33%2C0.022%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C75:78 scaffold43726 SAMTools SNP 293272 293272 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold43726 SAMTools SNP 293780 293780 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 294437 294437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 294772 294772 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold43726 SAMTools SNP 294866 294866 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43726 SAMTools SNP 294977 294977 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold43726 SAMTools SNP 295549 295549 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 299249 299249 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 299386 299386 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43726 SAMTools SNP 300181 300181 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43726 SAMTools SNP 300582 300582 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold43726 SAMTools SNP 303254 303254 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43742 SAMTools SNP 8122 8122 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 8891 8891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 13397 13397 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C85%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C124:99 scaffold43742 SAMTools SNP 13416 13416 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43742 SAMTools SNP 13428 13428 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C4%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.047%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43742 SAMTools SNP 13750 13750 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold43742 SAMTools SNP 13794 13794 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43742 SAMTools SNP 14804 14804 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43742 SAMTools SNP 16200 16200 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C105%2C0:99 scaffold43742 SAMTools SNP 16546 16546 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C105%2C0:99 scaffold43742 SAMTools SNP 16806 16806 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.1e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43742 SAMTools SNP 16992 16992 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C243:34 scaffold43742 SAMTools SNP 17349 17349 48.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold43742 SAMTools SNP 17570 17570 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C9%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.094%2C7.4e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43742 SAMTools SNP 37065 37065 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold43742 SAMTools SNP 43184 43184 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 44052 44052 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43742 SAMTools SNP 44266 44266 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43742 SAMTools SNP 45947 45947 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43742 SAMTools SNP 46176 46176 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C22:25 scaffold43742 SAMTools SNP 48131 48131 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C15%2C0:27 scaffold43742 SAMTools SNP 50903 50903 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C50%2C7%2C38%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.024%2C6.5e-91%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold43742 SAMTools SNP 51448 51448 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C16%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C3.9e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43742 SAMTools SNP 52557 52557 60.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold43742 SAMTools SNP 60718 60718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43742 SAMTools SNP 62275 62275 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.01%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C238:91 scaffold43742 SAMTools SNP 62313 62313 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43742 SAMTools SNP 62831 62831 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43742 SAMTools SNP 63396 63396 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C10%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C108:99 scaffold43742 SAMTools SNP 64023 64023 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.011%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C232:66 scaffold43742 SAMTools SNP 64033 64033 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43742 SAMTools SNP 64264 64264 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 64276 64276 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 67046 67046 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43742 SAMTools SNP 67075 67075 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43742 SAMTools SNP 67528 67528 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43742 SAMTools SNP 67561 67561 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43742 SAMTools SNP 67609 67609 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43742 SAMTools SNP 67612 67612 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.029%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold43742 SAMTools SNP 67627 67627 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold43742 SAMTools SNP 67819 67819 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 67831 67831 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C104:99 scaffold43742 SAMTools SNP 68770 68770 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C232:99 scaffold43742 SAMTools SNP 68815 68815 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0079%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43742 SAMTools SNP 69340 69340 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43742 SAMTools SNP 69692 69692 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43742 SAMTools SNP 70055 70055 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43742 SAMTools SNP 71614 71614 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D43%3BFQ%3D90.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C122:99 scaffold43742 SAMTools SNP 71638 71638 92.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold43742 SAMTools SNP 72046 72046 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold43742 SAMTools SNP 72163 72163 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C59:62 scaffold43742 SAMTools SNP 72535 72535 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold43742 SAMTools SNP 72557 72557 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold43742 SAMTools SNP 72844 72844 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.055%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43742 SAMTools SNP 74583 74583 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43742 SAMTools SNP 75104 75104 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 75732 75732 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43742 SAMTools SNP 75786 75786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.21%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold43742 SAMTools SNP 76144 76144 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold43742 SAMTools SNP 76595 76595 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43742 SAMTools SNP 77490 77490 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43742 SAMTools SNP 77520 77520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 77526 77526 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43742 SAMTools SNP 77547 77547 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43742 SAMTools SNP 78020 78020 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 78156 78156 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 78887 78887 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43742 SAMTools SNP 79110 79110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold43742 SAMTools SNP 79236 79236 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43742 SAMTools SNP 81343 81343 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43742 SAMTools SNP 81346 81346 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43742 SAMTools SNP 81641 81641 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C158:72 scaffold43742 SAMTools SNP 81656 81656 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold43742 SAMTools SNP 81673 81673 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 83567 83567 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 83630 83630 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 88784 88784 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C99%2C3%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 88810 88810 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C37%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43742 SAMTools SNP 92663 92663 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 97681 97681 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 98203 98203 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 98276 98276 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 118661 118661 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00012%2C4.3e-06%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43742 SAMTools SNP 118681 118681 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C0%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 119102 119102 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43742 SAMTools SNP 119317 119317 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43742 SAMTools SNP 124054 124054 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold43742 SAMTools SNP 124408 124408 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C20%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.68%2C0.066%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43742 SAMTools SNP 124822 124822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43742 SAMTools SNP 124825 124825 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 130071 130071 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold43742 SAMTools SNP 130141 130141 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43742 SAMTools SNP 130489 130489 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C119:99 scaffold43742 SAMTools SNP 135291 135291 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C2%2C108%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.067%2C5.1e-123%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43742 SAMTools SNP 135451 135451 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D499%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C179%2C67%2C154%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C3.7e-322%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold43742 SAMTools SNP 136768 136768 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43742 SAMTools SNP 138911 138911 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.46%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C182:48 scaffold43742 SAMTools SNP 140945 140945 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.25%2C0.00055%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43742 SAMTools SNP 144937 144937 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43742 SAMTools SNP 147417 147417 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.61%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C252:99 scaffold43742 SAMTools SNP 147489 147489 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C140:99 scaffold43742 SAMTools SNP 147492 147492 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold43742 SAMTools SNP 148256 148256 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43742 SAMTools SNP 149838 149838 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.58%2C0.41%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold43742 SAMTools SNP 153158 153158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 153169 153169 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 166760 166760 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43742 SAMTools SNP 176965 176965 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 178412 178412 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C57%2C0:94 scaffold43742 SAMTools SNP 178529 178529 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C60%2C0:99 scaffold43742 SAMTools SNP 179185 179185 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C17%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.41%2C4.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold43742 SAMTools SNP 180231 180231 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43742 SAMTools SNP 180488 180488 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43742 SAMTools SNP 180836 180836 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43742 SAMTools SNP 180989 180989 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43742 SAMTools SNP 181195 181195 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.041%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C121:66 scaffold43742 SAMTools SNP 181361 181361 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 181382 181382 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43742 SAMTools SNP 181618 181618 12.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43742 SAMTools SNP 181661 181661 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C33%2C0:63 scaffold43742 SAMTools SNP 182375 182375 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43742 SAMTools SNP 183553 183553 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 183956 183956 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.44%2C0.00052%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C188:73 scaffold43742 SAMTools SNP 184196 184196 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43742 SAMTools SNP 186094 186094 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 187151 187151 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43742 SAMTools SNP 187158 187158 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C27:31 scaffold43742 SAMTools SNP 188838 188838 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C17%2C17%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.62%2C4.6e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43742 SAMTools SNP 189865 189865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C9%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43742 SAMTools SNP 189945 189945 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C21%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 196122 196122 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.12%2C0.44%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold43742 SAMTools SNP 196176 196176 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.49%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 198178 198178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43742 SAMTools SNP 198186 198186 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D44%3BFQ%3D18.1%3BPV4%3D1%2C1%2C0.095%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C220:48 scaffold43742 SAMTools SNP 198681 198681 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43742 SAMTools SNP 198696 198696 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43742 SAMTools SNP 198738 198738 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 198789 198789 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold43742 SAMTools SNP 199052 199052 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0042%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43742 SAMTools SNP 199073 199073 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43742 SAMTools SNP 199082 199082 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold43742 SAMTools SNP 199400 199400 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.28%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold43742 SAMTools SNP 201175 201175 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43742 SAMTools SNP 201454 201454 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D9.3e-05%2C0.25%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43742 SAMTools SNP 201463 201463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43742 SAMTools SNP 201478 201478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43742 SAMTools SNP 201673 201673 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold43742 SAMTools SNP 201679 201679 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43742 SAMTools SNP 209852 209852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 214489 214489 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 214513 214513 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 214555 214555 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 216651 216651 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C72%2C0:99 scaffold43742 SAMTools SNP 216832 216832 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C255%2C0:99 scaffold43742 SAMTools SNP 216973 216973 49.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold43742 SAMTools SNP 219458 219458 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C240:99 scaffold43742 SAMTools SNP 219487 219487 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C1%2C38%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold43742 SAMTools SNP 219503 219503 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C71%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 227116 227116 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43742 SAMTools SNP 227161 227161 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold43742 SAMTools SNP 227642 227642 46.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold43742 SAMTools SNP 233902 233902 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43742 SAMTools SNP 243597 243597 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 245605 245605 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43742 SAMTools SNP 249646 249646 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43742 SAMTools SNP 250330 250330 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.096%2C0.19%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold43742 SAMTools SNP 250384 250384 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 251337 251337 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43742 SAMTools SNP 256041 256041 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 256338 256338 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 256825 256825 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C19%2C1%2C14%3BMQ%3D50%3BFQ%3D137%3BPV4%3D3.5e-06%2C0.48%2C1%2C6.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold43742 SAMTools SNP 260068 260068 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C179:43 scaffold43742 SAMTools SNP 263228 263228 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43742 SAMTools SNP 263240 263240 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold43742 SAMTools SNP 265174 265174 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43742 SAMTools SNP 265423 265423 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-05%2C2.1e-12%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43742 SAMTools SNP 265555 265555 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C26%2C1%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold43742 SAMTools SNP 266560 266560 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43742 SAMTools SNP 266569 266569 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43742 SAMTools SNP 266641 266641 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43742 SAMTools SNP 267004 267004 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 267034 267034 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43742 SAMTools SNP 267070 267070 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.33%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C176:99 scaffold43742 SAMTools SNP 267076 267076 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold43742 SAMTools SNP 269631 269631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43742 SAMTools SNP 269670 269670 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C37%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43742 SAMTools SNP 270472 270472 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold43742 SAMTools SNP 272118 272118 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C30%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.61%2C3.2e-43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43742 SAMTools SNP 275481 275481 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43742 SAMTools SNP 277309 277309 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D3.81%3BPV4%3D1%2C6.7e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C32:29 scaffold43742 SAMTools SNP 282656 282656 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43742 SAMTools SNP 282688 282688 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43742 SAMTools SNP 305924 305924 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 563 563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 606 606 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 5096 5096 198 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.3%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold43764 SAMTools SNP 5122 5122 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold43764 SAMTools SNP 9946 9946 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.36%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C224:99 scaffold43764 SAMTools SNP 13128 13128 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.43%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43764 SAMTools SNP 13139 13139 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43764 SAMTools SNP 13723 13723 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0114%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold43764 SAMTools SNP 13748 13748 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43764 SAMTools SNP 14548 14548 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold43764 SAMTools SNP 17202 17202 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43764 SAMTools SNP 21955 21955 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold43764 SAMTools SNP 23061 23061 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold43764 SAMTools SNP 23256 23256 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D54.8%3BPV4%3D1%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C82:85 scaffold43764 SAMTools SNP 45757 45757 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C19:22 scaffold43764 SAMTools SNP 55034 55034 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.036%2C4.2e-06%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C177:39 scaffold43764 SAMTools SNP 55066 55066 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C27%2C0:51 scaffold43764 SAMTools SNP 55144 55144 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43764 SAMTools SNP 55629 55629 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43764 SAMTools SNP 55706 55706 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold43764 SAMTools SNP 56197 56197 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43764 SAMTools SNP 56216 56216 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43764 SAMTools SNP 56247 56247 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43764 SAMTools SNP 58133 58133 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.094%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43764 SAMTools SNP 60171 60171 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43764 SAMTools SNP 60653 60653 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43764 SAMTools SNP 62734 62734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43764 SAMTools SNP 65904 65904 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43764 SAMTools SNP 65991 65991 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C51%2C0:99 scaffold43764 SAMTools SNP 66186 66186 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold43764 SAMTools SNP 66233 66233 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.13%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C200:43 scaffold43764 SAMTools SNP 66666 66666 78.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold43764 SAMTools SNP 67453 67453 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C9%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C3.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C192:99 scaffold43764 SAMTools SNP 67533 67533 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C3.9e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C169:78 scaffold43764 SAMTools SNP 67934 67934 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.28%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C232:43 scaffold43764 SAMTools SNP 68042 68042 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43764 SAMTools SNP 68398 68398 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.48%2C1.8e-24%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43764 SAMTools SNP 68976 68976 46.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold43764 SAMTools SNP 69202 69202 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C15%2C10%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C7.8e-28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43764 SAMTools SNP 69697 69697 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C3.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C221:76 scaffold43764 SAMTools SNP 70342 70342 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43764 SAMTools SNP 70752 70752 19.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold43764 SAMTools SNP 71123 71123 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C23%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43764 SAMTools SNP 71886 71886 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold43764 SAMTools SNP 74318 74318 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold43764 SAMTools SNP 77091 77091 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C33%2C0:63 scaffold43764 SAMTools SNP 77667 77667 59.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold43764 SAMTools SNP 77736 77736 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0099%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43764 SAMTools SNP 77755 77755 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C135:46 scaffold43764 SAMTools SNP 78297 78297 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43764 SAMTools SNP 80430 80430 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C3.7e-09%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43764 SAMTools SNP 81533 81533 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43764 SAMTools SNP 81534 81534 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43764 SAMTools SNP 81987 81987 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold43764 SAMTools SNP 81990 81990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43764 SAMTools SNP 83789 83789 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 83791 83791 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 83858 83858 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 108532 108532 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43764 SAMTools SNP 109368 109368 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.4e-09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C66:40 scaffold43764 SAMTools SNP 109430 109430 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43764 SAMTools SNP 114199 114199 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 114274 114274 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43764 SAMTools SNP 114984 114984 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43764 SAMTools SNP 115183 115183 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C21%2C0:39 scaffold43764 SAMTools SNP 115286 115286 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 115746 115746 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43764 SAMTools SNP 115765 115765 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43764 SAMTools SNP 115801 115801 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold43764 SAMTools SNP 115803 115803 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43764 SAMTools SNP 116017 116017 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43764 SAMTools SNP 116050 116050 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C0.001%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold43764 SAMTools SNP 116065 116065 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C1%3BMQ%3D48%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43764 SAMTools SNP 116678 116678 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C12%2C6%3BMQ%3D48%3BFQ%3D214%3BPV4%3D0.2%2C1%2C0.13%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold43764 SAMTools SNP 117029 117029 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C10%2C10%3BMQ%3D47%3BFQ%3D203%3BPV4%3D0.049%2C1%2C0.1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold43764 SAMTools SNP 117035 117035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43764 SAMTools SNP 117064 117064 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C8%3BMQ%3D48%3BFQ%3D186%3BPV4%3D0.64%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43764 SAMTools SNP 117101 117101 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43764 SAMTools SNP 118161 118161 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D44%3BFQ%3D43%3BPV4%3D0.17%2C0.26%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C182:73 scaffold43764 SAMTools SNP 118650 118650 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 120426 120426 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43764 SAMTools SNP 124112 124112 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 124432 124432 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 124444 124444 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 124749 124749 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold43764 SAMTools SNP 124764 124764 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43764 SAMTools SNP 124821 124821 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43764 SAMTools SNP 125359 125359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43764 SAMTools SNP 127230 127230 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold43764 SAMTools SNP 132647 132647 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C30%2C0:57 scaffold43764 SAMTools SNP 142017 142017 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 143691 143691 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C20%2C2%3BMQ%3D44%3BFQ%3D129%3BPV4%3D0.53%2C0.31%2C0.08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C156:99 scaffold43764 SAMTools SNP 160924 160924 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43764 SAMTools SNP 161419 161419 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43764 SAMTools SNP 162622 162622 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43764 SAMTools SNP 162807 162807 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C313%2C12%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43764 SAMTools SNP 163521 163521 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43764 SAMTools SNP 163667 163667 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C83%2C7%2C44%3BMQ%3D47%3BFQ%3D188%3BPV4%3D0.00026%2C8.6e-10%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43764 SAMTools SNP 163718 163718 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C29%2C4%2C6%3BMQ%3D46%3BFQ%3D51%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43764 SAMTools SNP 163742 163742 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C9%2C48%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.23%2C1.5e-05%2C0.27%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43764 SAMTools SNP 165608 165608 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C52%3BMQ%3D42%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43764 SAMTools SNP 166575 166575 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold43764 SAMTools SNP 167041 167041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C46%2C58%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43764 SAMTools SNP 167316 167316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43764 SAMTools SNP 167358 167358 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold43764 SAMTools SNP 167610 167610 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43764 SAMTools SNP 169257 169257 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C57%2C22%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C0.41%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C0:99 scaffold43764 SAMTools SNP 171477 171477 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C30%2C20%3BMQ%3D50%3BFQ%3D-139%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C112%2C0:99 scaffold43764 SAMTools SNP 174842 174842 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43764 SAMTools SNP 185797 185797 173 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C21%2C0%2C202%2C9%2C199:39 scaffold43764 SAMTools SNP 185808 185808 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C255%2C0:99 scaffold43764 SAMTools SNP 196197 196197 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43764 SAMTools SNP 211844 211844 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 211892 211892 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 212179 212179 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 217242 217242 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 217245 217245 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43764 SAMTools SNP 218058 218058 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43764 SAMTools SNP 218532 218532 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43764 SAMTools SNP 221806 221806 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold43764 SAMTools SNP 222180 222180 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold43764 SAMTools SNP 222190 222190 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0.075%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C113:41 scaffold43764 SAMTools SNP 222498 222498 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43764 SAMTools SNP 222890 222890 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold43764 SAMTools SNP 245683 245683 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C9%2C1%3BMQ%3D42%3BFQ%3D152%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C212:99 scaffold43764 SAMTools SNP 245810 245810 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43764 SAMTools SNP 275965 275965 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.62%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43764 SAMTools SNP 276763 276763 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.052%2C5.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43764 SAMTools SNP 276817 276817 164 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C123%2C0:99 scaffold43764 SAMTools SNP 294075 294075 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43764 SAMTools SNP 294478 294478 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.3e-16%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C145:69 scaffold43764 SAMTools SNP 294527 294527 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43764 SAMTools SNP 294821 294821 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold43764 SAMTools SNP 294912 294912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43764 SAMTools SNP 295688 295688 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43764 SAMTools SNP 296049 296049 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43764 SAMTools SNP 298325 298325 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C57%2C0:99 scaffold43764 SAMTools SNP 301026 301026 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43772 SAMTools SNP 25057 25057 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43772 SAMTools SNP 64469 64469 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43772 SAMTools SNP 65382 65382 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C8.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C158:55 scaffold43772 SAMTools SNP 65562 65562 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C24%2C0:45 scaffold43772 SAMTools SNP 83334 83334 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43772 SAMTools SNP 85208 85208 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43772 SAMTools SNP 85689 85689 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C48%2C0:93 scaffold43772 SAMTools SNP 95243 95243 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C7%3BMQ%3D49%3BFQ%3D215%3BPV4%3D1%2C0.088%2C0.12%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43772 SAMTools SNP 95687 95687 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D3.03%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C28:31 scaffold43772 SAMTools SNP 97776 97776 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C6%2C4%3BMQ%3D44%3BFQ%3D214%3BPV4%3D0.08%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C246:99 scaffold43772 SAMTools SNP 97788 97788 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C1%3BMQ%3D47%3BFQ%3D182%3BPV4%3D0.041%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C234:99 scaffold43772 SAMTools SNP 97830 97830 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold43772 SAMTools SNP 97865 97865 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.56%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C213:99 scaffold43772 SAMTools SNP 98580 98580 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43772 SAMTools SNP 98913 98913 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00068%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43772 SAMTools SNP 98959 98959 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43772 SAMTools SNP 99805 99805 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43772 SAMTools SNP 102744 102744 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43772 SAMTools SNP 106120 106120 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C58%2C63%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43772 SAMTools SNP 107169 107169 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43772 SAMTools SNP 107178 107178 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43772 SAMTools SNP 107284 107284 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold43772 SAMTools SNP 107369 107369 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43772 SAMTools SNP 110615 110615 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43772 SAMTools SNP 110640 110640 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43772 SAMTools SNP 111549 111549 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C1e-05%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C32:35 scaffold43772 SAMTools SNP 111688 111688 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43772 SAMTools SNP 112268 112268 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43772 SAMTools SNP 112292 112292 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.062%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold43772 SAMTools SNP 112726 112726 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C127:46 scaffold43772 SAMTools SNP 114789 114789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43772 SAMTools SNP 114816 114816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43772 SAMTools SNP 115298 115298 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.0047%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43772 SAMTools SNP 115310 115310 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.095%2C0.13%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold43772 SAMTools SNP 115332 115332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43772 SAMTools SNP 115457 115457 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C145:99 scaffold43772 SAMTools SNP 116123 116123 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43772 SAMTools SNP 117104 117104 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43772 SAMTools SNP 118171 118171 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43772 SAMTools SNP 121344 121344 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43772 SAMTools SNP 121752 121752 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43772 SAMTools SNP 122934 122934 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43772 SAMTools SNP 124866 124866 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43772 SAMTools SNP 125539 125539 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 125560 125560 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C0.0036%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold43772 SAMTools SNP 127167 127167 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.018%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43772 SAMTools SNP 127207 127207 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold43772 SAMTools SNP 128674 128674 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 128704 128704 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold43772 SAMTools SNP 132076 132076 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43772 SAMTools SNP 132085 132085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43772 SAMTools SNP 140234 140234 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43772 SAMTools SNP 150829 150829 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.31%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43772 SAMTools SNP 151825 151825 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.31%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43772 SAMTools SNP 151969 151969 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43772 SAMTools SNP 151973 151973 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.21%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43772 SAMTools SNP 154989 154989 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold43772 SAMTools SNP 155004 155004 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.61%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43772 SAMTools SNP 155248 155248 64.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold43772 SAMTools SNP 180193 180193 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.083%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold43772 SAMTools SNP 180452 180452 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.03%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43772 SAMTools SNP 181577 181577 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold43772 SAMTools SNP 181759 181759 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold43772 SAMTools SNP 183362 183362 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.47%3BPV4%3D1%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C35:38 scaffold43772 SAMTools SNP 188169 188169 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C168:42 scaffold43772 SAMTools SNP 189318 189318 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C216:41 scaffold43772 SAMTools SNP 189651 189651 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0038%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43772 SAMTools SNP 189701 189701 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 190540 190540 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43772 SAMTools SNP 190794 190794 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold43772 SAMTools SNP 190873 190873 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43772 SAMTools SNP 207024 207024 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43772 SAMTools SNP 207510 207510 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C0.048%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold43772 SAMTools SNP 211158 211158 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43772 SAMTools SNP 211651 211651 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 211689 211689 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C152:99 scaffold43772 SAMTools SNP 214738 214738 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C80:40 scaffold43772 SAMTools SNP 215565 215565 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43772 SAMTools SNP 215592 215592 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold43772 SAMTools SNP 218529 218529 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C20%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D9.4e-05%2C1%2C1%2C1.4e-39;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C98:99 scaffold43772 SAMTools SNP 218980 218980 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.17%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C210:99 scaffold43772 SAMTools SNP 219976 219976 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C16%2C2%3BMQ%3D48%3BFQ%3D93%3BPV4%3D1%2C1.3e-14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43772 SAMTools SNP 221351 221351 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D37%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C161:34 scaffold43772 SAMTools SNP 227424 227424 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D26%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C66%2C0:99 scaffold43772 SAMTools SNP 293477 293477 9.31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43772 SAMTools SNP 293560 293560 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold43772 SAMTools SNP 297091 297091 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 297112 297112 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43772 SAMTools SNP 297124 297124 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43772 SAMTools SNP 297292 297292 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43772 SAMTools SNP 297765 297765 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 27662 27662 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43782 SAMTools SNP 58484 58484 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43782 SAMTools SNP 62576 62576 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43782 SAMTools SNP 84715 84715 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43782 SAMTools SNP 85638 85638 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43782 SAMTools SNP 87092 87092 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 87124 87124 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 87335 87335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43782 SAMTools SNP 95900 95900 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold43782 SAMTools SNP 96363 96363 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43782 SAMTools SNP 96698 96698 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43782 SAMTools SNP 98389 98389 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C2%3BMQ%3D47%3BFQ%3D43%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C70:73 scaffold43782 SAMTools SNP 98403 98403 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold43782 SAMTools SNP 98470 98470 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D47%3BFQ%3D43%3BPV4%3D0.38%2C0.035%2C0.32%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C70:73 scaffold43782 SAMTools SNP 98889 98889 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43782 SAMTools SNP 98892 98892 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43782 SAMTools SNP 98955 98955 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43782 SAMTools SNP 98997 98997 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43782 SAMTools SNP 99415 99415 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43782 SAMTools SNP 99425 99425 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43782 SAMTools SNP 99427 99427 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.089%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43782 SAMTools SNP 99428 99428 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.33%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43782 SAMTools SNP 99984 99984 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43782 SAMTools SNP 102029 102029 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43782 SAMTools SNP 102045 102045 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 102085 102085 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold43782 SAMTools SNP 102557 102557 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43782 SAMTools SNP 102652 102652 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43782 SAMTools SNP 102676 102676 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.51%2C0.00062%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43782 SAMTools SNP 105257 105257 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43782 SAMTools SNP 114747 114747 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43782 SAMTools SNP 119307 119307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 119361 119361 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43782 SAMTools SNP 119944 119944 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 119990 119990 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.012%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 120032 120032 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43782 SAMTools SNP 120041 120041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43782 SAMTools SNP 122776 122776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C60:63 scaffold43782 SAMTools SNP 124333 124333 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C33%2C0:63 scaffold43782 SAMTools SNP 124369 124369 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.56%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43782 SAMTools SNP 124390 124390 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C219:44 scaffold43782 SAMTools SNP 124413 124413 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.44%2C2.4e-05%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43782 SAMTools SNP 124468 124468 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43782 SAMTools SNP 124470 124470 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43782 SAMTools SNP 124844 124844 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C244:99 scaffold43782 SAMTools SNP 124892 124892 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43782 SAMTools SNP 125637 125637 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C139:99 scaffold43782 SAMTools SNP 126596 126596 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43782 SAMTools SNP 126831 126831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43782 SAMTools SNP 127888 127888 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.041%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43782 SAMTools SNP 127895 127895 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43782 SAMTools SNP 127929 127929 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43782 SAMTools SNP 127983 127983 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.17%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43782 SAMTools SNP 128600 128600 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43782 SAMTools SNP 129531 129531 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43782 SAMTools SNP 129558 129558 88 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold43782 SAMTools SNP 133158 133158 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43782 SAMTools SNP 133944 133944 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.67%2C6.5e-11%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold43782 SAMTools SNP 133992 133992 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.061%2C6e-07%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43782 SAMTools SNP 134260 134260 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43782 SAMTools SNP 175657 175657 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43782 SAMTools SNP 176012 176012 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43782 SAMTools SNP 182024 182024 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43782 SAMTools SNP 196465 196465 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold43782 SAMTools SNP 203940 203940 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43782 SAMTools SNP 233106 233106 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43782 SAMTools SNP 233180 233180 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C66%2C1%2C43%3BMQ%3D50%3BFQ%3D208%3BPV4%3D6.4e-06%2C0.28%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43782 SAMTools SNP 233855 233855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C6%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 234220 234220 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C11%2C8%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0084%2C0.15%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold43782 SAMTools SNP 236595 236595 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C5%2C145%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 237409 237409 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold43782 SAMTools SNP 237675 237675 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43782 SAMTools SNP 238541 238541 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold43782 SAMTools SNP 238583 238583 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 239192 239192 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold43782 SAMTools SNP 239262 239262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43782 SAMTools SNP 239269 239269 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43782 SAMTools SNP 241521 241521 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.074%2C0.00011%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43782 SAMTools SNP 241532 241532 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 241546 241546 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 252566 252566 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43782 SAMTools SNP 252570 252570 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43782 SAMTools SNP 252591 252591 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 252833 252833 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C9%2C47%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.048%2C9.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 252905 252905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C77%2C10%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.075%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 253587 253587 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 253611 253611 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43782 SAMTools SNP 262324 262324 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C27%2C0:51 scaffold43782 SAMTools SNP 262692 262692 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C8.1e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C82:84 scaffold43782 SAMTools SNP 263402 263402 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43782 SAMTools SNP 263427 263427 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C16%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 264170 264170 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C13%2C10%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.15%2C2.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold43782 SAMTools SNP 264601 264601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43782 SAMTools SNP 264953 264953 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43782 SAMTools SNP 265001 265001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43782 SAMTools SNP 268350 268350 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold43782 SAMTools SNP 268416 268416 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold43782 SAMTools SNP 268449 268449 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43782 SAMTools SNP 268835 268835 153 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43782 SAMTools SNP 269269 269269 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43782 SAMTools SNP 269292 269292 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D83%3BPV4%3D4.3e-05%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold43782 SAMTools SNP 270231 270231 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.23%2C0.026%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43782 SAMTools SNP 275047 275047 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43782 SAMTools SNP 275056 275056 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.059%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold43782 SAMTools SNP 275110 275110 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 275982 275982 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C1%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.45%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43782 SAMTools SNP 276032 276032 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C36%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1e-37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43782 SAMTools SNP 284729 284729 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C132:48 scaffold43782 SAMTools SNP 284814 284814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43782 SAMTools SNP 285168 285168 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C11%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43782 SAMTools SNP 285237 285237 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.26%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43782 SAMTools SNP 295097 295097 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43782 SAMTools SNP 298001 298001 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43782 SAMTools SNP 298069 298069 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C26:29 scaffold43782 SAMTools SNP 298100 298100 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.19%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43782 SAMTools SNP 298250 298250 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43782 SAMTools SNP 298283 298283 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold43782 SAMTools SNP 298289 298289 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43782 SAMTools SNP 298292 298292 66.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C6%2C0:10 scaffold43782 SAMTools SNP 298611 298611 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C79:49 scaffold43782 SAMTools SNP 299277 299277 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43782 SAMTools SNP 299311 299311 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C42%2C0:81 scaffold43782 SAMTools SNP 300314 300314 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43782 SAMTools SNP 300752 300752 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43782 SAMTools SNP 304137 304137 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43782 SAMTools SNP 307532 307532 5.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D0.4%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C2%2C0:4 scaffold43782 SAMTools SNP 315878 315878 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C107:30 scaffold43786 SAMTools SNP 596 596 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 10574 10574 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43786 SAMTools SNP 10835 10835 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C10%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.13%2C0.5%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43786 SAMTools SNP 11467 11467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 11563 11563 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold43786 SAMTools SNP 11593 11593 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43786 SAMTools SNP 12099 12099 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.015%2C1%2C1%2C5.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold43786 SAMTools SNP 12160 12160 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 13108 13108 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43786 SAMTools SNP 13129 13129 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43786 SAMTools SNP 13156 13156 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 13628 13628 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold43786 SAMTools SNP 13676 13676 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43786 SAMTools SNP 14278 14278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.37%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43786 SAMTools SNP 14305 14305 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C15%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.0011%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43786 SAMTools SNP 14371 14371 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0046%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43786 SAMTools SNP 14624 14624 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold43786 SAMTools SNP 14684 14684 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C84%2C0:99 scaffold43786 SAMTools SNP 15510 15510 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 15591 15591 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 15597 15597 56.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold43786 SAMTools SNP 16052 16052 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 16834 16834 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.45%2C0.0039%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C246:42 scaffold43786 SAMTools SNP 17305 17305 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43786 SAMTools SNP 17362 17362 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.16%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold43786 SAMTools SNP 17709 17709 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 17712 17712 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 17742 17742 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43786 SAMTools SNP 18484 18484 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43786 SAMTools SNP 19282 19282 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43786 SAMTools SNP 19327 19327 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C36%2C0:69 scaffold43786 SAMTools SNP 19393 19393 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 23217 23217 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 23220 23220 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 25537 25537 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D2%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C9:12 scaffold43786 SAMTools SNP 27196 27196 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 27202 27202 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 27295 27295 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 28440 28440 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43786 SAMTools SNP 28461 28461 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43786 SAMTools SNP 28476 28476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43786 SAMTools SNP 28901 28901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43786 SAMTools SNP 29998 29998 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C11%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold43786 SAMTools SNP 32028 32028 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C30%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.00062%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43786 SAMTools SNP 32128 32128 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold43786 SAMTools SNP 32217 32217 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43786 SAMTools SNP 32640 32640 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0099%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold43786 SAMTools SNP 32673 32673 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold43786 SAMTools SNP 32688 32688 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C232:99 scaffold43786 SAMTools SNP 33237 33237 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold43786 SAMTools SNP 33645 33645 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 33673 33673 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 34477 34477 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43786 SAMTools SNP 36470 36470 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43786 SAMTools SNP 40115 40115 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold43786 SAMTools SNP 40349 40349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 40354 40354 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 42903 42903 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C48%2C0:90 scaffold43786 SAMTools SNP 43063 43063 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43786 SAMTools SNP 44236 44236 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.47%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold43786 SAMTools SNP 44282 44282 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 46822 46822 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43786 SAMTools SNP 48220 48220 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold43786 SAMTools SNP 57993 57993 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 59913 59913 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43786 SAMTools SNP 60401 60401 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43786 SAMTools SNP 60438 60438 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43786 SAMTools SNP 61542 61542 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C7.9e-06%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C184:49 scaffold43786 SAMTools SNP 62867 62867 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold43786 SAMTools SNP 62924 62924 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 62927 62927 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 63602 63602 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold43786 SAMTools SNP 63689 63689 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 64094 64094 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43786 SAMTools SNP 64329 64329 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold43786 SAMTools SNP 64338 64338 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43786 SAMTools SNP 64944 64944 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43786 SAMTools SNP 67737 67737 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold43786 SAMTools SNP 67941 67941 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43786 SAMTools SNP 69121 69121 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold43786 SAMTools SNP 71167 71167 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0029%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold43786 SAMTools SNP 71205 71205 60.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold43786 SAMTools SNP 71594 71594 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold43786 SAMTools SNP 73453 73453 36.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold43786 SAMTools SNP 73597 73597 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 73859 73859 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 74543 74543 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43786 SAMTools SNP 74867 74867 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 75263 75263 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 78598 78598 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold43786 SAMTools SNP 78644 78644 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C35:38 scaffold43786 SAMTools SNP 78757 78757 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 79403 79403 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43786 SAMTools SNP 79409 79409 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43786 SAMTools SNP 83826 83826 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C9:12 scaffold43786 SAMTools SNP 84708 84708 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43786 SAMTools SNP 87424 87424 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43786 SAMTools SNP 87428 87428 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 88536 88536 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.013%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C136:88 scaffold43786 SAMTools SNP 88561 88561 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43786 SAMTools SNP 89159 89159 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43786 SAMTools SNP 89426 89426 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 91304 91304 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.49%2C5.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43786 SAMTools SNP 91975 91975 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold43786 SAMTools SNP 92006 92006 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold43786 SAMTools SNP 93411 93411 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43786 SAMTools SNP 95278 95278 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 102304 102304 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold43786 SAMTools SNP 103764 103764 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D4.66%3BPV4%3D0.33%2C0.029%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold43786 SAMTools SNP 111267 111267 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 111673 111673 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.47%2C0.089%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C152:50 scaffold43786 SAMTools SNP 112426 112426 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D37.8%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C65:68 scaffold43786 SAMTools SNP 112728 112728 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43786 SAMTools SNP 115264 115264 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 116039 116039 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43786 SAMTools SNP 121243 121243 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 121288 121288 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 162405 162405 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43786 SAMTools SNP 165971 165971 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 184905 184905 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43786 SAMTools SNP 184937 184937 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.47%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43786 SAMTools SNP 184965 184965 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold43786 SAMTools SNP 185052 185052 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.44%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold43786 SAMTools SNP 185360 185360 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43786 SAMTools SNP 185510 185510 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold43786 SAMTools SNP 186257 186257 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43786 SAMTools SNP 193492 193492 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold43786 SAMTools SNP 193570 193570 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.56%2C1.8e-18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C197:64 scaffold43786 SAMTools SNP 193813 193813 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C250:99 scaffold43786 SAMTools SNP 194325 194325 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.29%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold43786 SAMTools SNP 194355 194355 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.41%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold43786 SAMTools SNP 194923 194923 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43786 SAMTools SNP 195010 195010 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold43786 SAMTools SNP 195092 195092 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold43786 SAMTools SNP 195136 195136 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C0.076%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold43786 SAMTools SNP 195388 195388 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43786 SAMTools SNP 195415 195415 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C27%2C0:51 scaffold43786 SAMTools SNP 195915 195915 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 196584 196584 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43786 SAMTools SNP 197463 197463 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43786 SAMTools SNP 197574 197574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 197997 197997 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C10%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43786 SAMTools SNP 198758 198758 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43786 SAMTools SNP 199385 199385 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43786 SAMTools SNP 199785 199785 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 209553 209553 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold43786 SAMTools SNP 210869 210869 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43786 SAMTools SNP 211963 211963 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C66:43 scaffold43786 SAMTools SNP 212468 212468 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43786 SAMTools SNP 212501 212501 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold43786 SAMTools SNP 212570 212570 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.57%2C0.39%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43786 SAMTools SNP 214566 214566 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43786 SAMTools SNP 214605 214605 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43786 SAMTools SNP 214779 214779 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43786 SAMTools SNP 214822 214822 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0253%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C8.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43786 SAMTools SNP 218991 218991 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold43786 SAMTools SNP 221568 221568 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43786 SAMTools SNP 224935 224935 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43786 SAMTools SNP 225239 225239 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold43786 SAMTools SNP 232547 232547 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.018%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C195:42 scaffold43786 SAMTools SNP 237016 237016 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold43786 SAMTools SNP 239058 239058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C31%2C29%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 241212 241212 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C24%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 241556 241556 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 241622 241622 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C4%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.076%2C2.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43786 SAMTools SNP 241658 241658 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.023%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold43786 SAMTools SNP 243674 243674 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43786 SAMTools SNP 244098 244098 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.012%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43786 SAMTools SNP 245542 245542 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.11%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold43786 SAMTools SNP 245605 245605 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold43786 SAMTools SNP 245611 245611 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0148%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43786 SAMTools SNP 246744 246744 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 253285 253285 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43786 SAMTools SNP 253291 253291 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.054%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43786 SAMTools SNP 257393 257393 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold43786 SAMTools SNP 257756 257756 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43786 SAMTools SNP 258095 258095 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43786 SAMTools SNP 258128 258128 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.017%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C209:39 scaffold43786 SAMTools SNP 266565 266565 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold43786 SAMTools SNP 266582 266582 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43786 SAMTools SNP 266632 266632 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold43786 SAMTools SNP 271128 271128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C19%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43786 SAMTools SNP 281647 281647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43786 SAMTools SNP 281688 281688 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold43786 SAMTools SNP 281742 281742 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C14%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.58%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold43786 SAMTools SNP 283963 283963 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43786 SAMTools SNP 283996 283996 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43786 SAMTools SNP 284171 284171 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold43786 SAMTools SNP 286035 286035 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 286059 286059 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43786 SAMTools SNP 288037 288037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43786 SAMTools SNP 289895 289895 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43786 SAMTools SNP 289928 289928 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43786 SAMTools SNP 290959 290959 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43786 SAMTools SNP 294100 294100 6.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C1%2C0:4 scaffold43794 SAMTools SNP 4956 4956 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43794 SAMTools SNP 4973 4973 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43794 SAMTools SNP 5095 5095 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold43794 SAMTools SNP 7486 7486 63.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold43794 SAMTools SNP 7723 7723 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C21%2C0:39 scaffold43794 SAMTools SNP 8814 8814 55.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold43794 SAMTools SNP 8843 8843 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold43794 SAMTools SNP 9090 9090 24.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold43794 SAMTools SNP 9241 9241 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43794 SAMTools SNP 9646 9646 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43794 SAMTools SNP 9883 9883 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43794 SAMTools SNP 10429 10429 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43794 SAMTools SNP 10483 10483 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43794 SAMTools SNP 11596 11596 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 11616 11616 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold43794 SAMTools SNP 13828 13828 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43794 SAMTools SNP 30039 30039 35.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold43794 SAMTools SNP 33699 33699 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43794 SAMTools SNP 34675 34675 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 34678 34678 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 34759 34759 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C195:99 scaffold43794 SAMTools SNP 34912 34912 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43794 SAMTools SNP 35490 35490 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold43794 SAMTools SNP 35523 35523 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43794 SAMTools SNP 35544 35544 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C205:99 scaffold43794 SAMTools SNP 36011 36011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43794 SAMTools SNP 36452 36452 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C80:73 scaffold43794 SAMTools SNP 36746 36746 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43794 SAMTools SNP 36790 36790 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C93:96 scaffold43794 SAMTools SNP 37632 37632 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43794 SAMTools SNP 37663 37663 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C201:72 scaffold43794 SAMTools SNP 37665 37665 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43794 SAMTools SNP 38225 38225 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.023%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43794 SAMTools SNP 38226 38226 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43794 SAMTools SNP 40076 40076 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.013%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C161:34 scaffold43794 SAMTools SNP 40118 40118 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43794 SAMTools SNP 40620 40620 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43794 SAMTools SNP 42438 42438 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.031%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43794 SAMTools SNP 42441 42441 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43794 SAMTools SNP 43007 43007 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43794 SAMTools SNP 43056 43056 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold43794 SAMTools SNP 44667 44667 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43794 SAMTools SNP 46409 46409 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.2%2C0.0048%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C198:56 scaffold43794 SAMTools SNP 46517 46517 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C233:99 scaffold43794 SAMTools SNP 47222 47222 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C42%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43794 SAMTools SNP 65261 65261 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.047%2C8.5e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold43794 SAMTools SNP 65378 65378 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C5%2C20%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.35%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43794 SAMTools SNP 71311 71311 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold43794 SAMTools SNP 71592 71592 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43794 SAMTools SNP 71646 71646 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43794 SAMTools SNP 71878 71878 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43794 SAMTools SNP 72341 72341 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0049%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C153:60 scaffold43794 SAMTools SNP 73381 73381 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C98%2C4%2C115%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.036%2C2e-138%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold43794 SAMTools SNP 73405 73405 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C115%2C7%2C98%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.36%2C6e-136%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43794 SAMTools SNP 74289 74289 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C3%2C27%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C2.9e-53%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43794 SAMTools SNP 75677 75677 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43794 SAMTools SNP 82531 82531 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C195:31 scaffold43794 SAMTools SNP 86385 86385 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43794 SAMTools SNP 95173 95173 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C46%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold43794 SAMTools SNP 95181 95181 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C54%3BMQ%3D50%3BFQ%3D-245%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C218%2C0:99 scaffold43794 SAMTools SNP 95442 95442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43794 SAMTools SNP 95470 95470 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C26%2C18%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0097%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43794 SAMTools SNP 95485 95485 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C23%2C21%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.04%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43794 SAMTools SNP 101674 101674 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43794 SAMTools SNP 103817 103817 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C51:69 scaffold43794 SAMTools SNP 103877 103877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43794 SAMTools SNP 103886 103886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43794 SAMTools SNP 104829 104829 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C186:41 scaffold43794 SAMTools SNP 106281 106281 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43794 SAMTools SNP 106807 106807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43794 SAMTools SNP 109726 109726 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43794 SAMTools SNP 110181 110181 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43794 SAMTools SNP 110630 110630 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C15%2C8%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.049%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold43794 SAMTools SNP 110682 110682 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43794 SAMTools SNP 110753 110753 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43794 SAMTools SNP 113166 113166 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43794 SAMTools SNP 113241 113241 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.51%2C0.0061%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43794 SAMTools SNP 113341 113341 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold43794 SAMTools SNP 115663 115663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43794 SAMTools SNP 115665 115665 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D48%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C6.8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C195:36 scaffold43794 SAMTools SNP 116068 116068 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D9.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C233:49 scaffold43794 SAMTools SNP 116157 116157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43794 SAMTools SNP 116388 116388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43794 SAMTools SNP 116774 116774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43794 SAMTools SNP 116819 116819 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C18%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.49%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold43794 SAMTools SNP 116822 116822 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43794 SAMTools SNP 117146 117146 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43794 SAMTools SNP 117218 117218 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43794 SAMTools SNP 117266 117266 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 119097 119097 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 119124 119124 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43794 SAMTools SNP 119513 119513 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43794 SAMTools SNP 119525 119525 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold43794 SAMTools SNP 119536 119536 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold43794 SAMTools SNP 119734 119734 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43794 SAMTools SNP 119785 119785 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43794 SAMTools SNP 120129 120129 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43794 SAMTools SNP 120159 120159 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43794 SAMTools SNP 120442 120442 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43794 SAMTools SNP 312646 312646 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43798 SAMTools SNP 2017 2017 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 5050 5050 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 6218 6218 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 132938 132938 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43798 SAMTools SNP 132953 132953 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 134000 134000 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43798 SAMTools SNP 135592 135592 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43798 SAMTools SNP 135600 135600 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43798 SAMTools SNP 136087 136087 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43798 SAMTools SNP 136215 136215 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D37%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold43798 SAMTools SNP 136795 136795 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 183701 183701 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43798 SAMTools SNP 183711 183711 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 184243 184243 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 184255 184255 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold43798 SAMTools SNP 184800 184800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C61%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43798 SAMTools SNP 185045 185045 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C0%2C30%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.5%2C0.42%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43798 SAMTools SNP 185114 185114 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43798 SAMTools SNP 185673 185673 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43798 SAMTools SNP 185700 185700 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 185706 185706 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 185730 185730 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43798 SAMTools SNP 186006 186006 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C235:99 scaffold43798 SAMTools SNP 186611 186611 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43798 SAMTools SNP 187362 187362 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold43798 SAMTools SNP 188008 188008 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43798 SAMTools SNP 189270 189270 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 192796 192796 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43798 SAMTools SNP 192799 192799 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43798 SAMTools SNP 192815 192815 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0167%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C230:37 scaffold43798 SAMTools SNP 194510 194510 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C60:30 scaffold43798 SAMTools SNP 194512 194512 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C123:40 scaffold43798 SAMTools SNP 194818 194818 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 194910 194910 44.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C7.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C4%2C0:7 scaffold43798 SAMTools SNP 198685 198685 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 199206 199206 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43798 SAMTools SNP 199577 199577 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C74:77 scaffold43798 SAMTools SNP 199583 199583 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43798 SAMTools SNP 199589 199589 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43798 SAMTools SNP 199595 199595 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.048%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold43798 SAMTools SNP 199652 199652 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold43798 SAMTools SNP 200912 200912 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C216:87 scaffold43798 SAMTools SNP 202575 202575 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D75.2%3BPV4%3D0.4%2C0.16%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C110:99 scaffold43798 SAMTools SNP 204594 204594 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0059%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43798 SAMTools SNP 204612 204612 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.067%2C0.009%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43798 SAMTools SNP 207652 207652 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43798 SAMTools SNP 208410 208410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43798 SAMTools SNP 208516 208516 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43798 SAMTools SNP 208752 208752 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold43798 SAMTools SNP 209463 209463 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0028%2C1.5e-06%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43798 SAMTools SNP 213625 213625 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold43798 SAMTools SNP 214488 214488 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 214491 214491 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 215458 215458 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43798 SAMTools SNP 215482 215482 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43798 SAMTools SNP 218258 218258 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.52%2C5.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C142:85 scaffold43798 SAMTools SNP 218434 218434 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C12%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C4.1e-05%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43798 SAMTools SNP 219370 219370 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C108%2C0:99 scaffold43798 SAMTools SNP 219514 219514 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C13%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C245:99 scaffold43798 SAMTools SNP 221204 221204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43798 SAMTools SNP 221250 221250 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 227789 227789 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 258464 258464 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43798 SAMTools SNP 258689 258689 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold43798 SAMTools SNP 258974 258974 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C48%2C0:85 scaffold43798 SAMTools SNP 269544 269544 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43798 SAMTools SNP 272846 272846 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43798 SAMTools SNP 276873 276873 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43798 SAMTools SNP 279425 279425 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold43798 SAMTools SNP 279464 279464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C44%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43798 SAMTools SNP 280268 280268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43798 SAMTools SNP 280298 280298 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.072%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43798 SAMTools SNP 280310 280310 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43798 SAMTools SNP 280325 280325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43798 SAMTools SNP 281307 281307 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold43798 SAMTools SNP 281316 281316 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43798 SAMTools SNP 281328 281328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.12%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold43798 SAMTools SNP 281352 281352 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold43798 SAMTools SNP 281842 281842 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43798 SAMTools SNP 287288 287288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C7.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43798 SAMTools SNP 287551 287551 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C73%2C3%2C65%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C3.8e-122%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43798 SAMTools SNP 287731 287731 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.4%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43798 SAMTools SNP 289174 289174 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43798 SAMTools SNP 297734 297734 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C9%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.028%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43798 SAMTools SNP 297765 297765 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.52%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43798 SAMTools SNP 298347 298347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43798 SAMTools SNP 298783 298783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C7%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43798 SAMTools SNP 298903 298903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43798 SAMTools SNP 299853 299853 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43798 SAMTools SNP 302161 302161 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43798 SAMTools SNP 302202 302202 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 304623 304623 51.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43798 SAMTools SNP 304670 304670 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43798 SAMTools SNP 305159 305159 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 305595 305595 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 305661 305661 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 305683 305683 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 307335 307335 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold43798 SAMTools SNP 310300 310300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 311225 311225 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold43798 SAMTools SNP 311714 311714 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C12%2C0:21 scaffold43798 SAMTools SNP 311846 311846 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C73:42 scaffold43798 SAMTools SNP 318477 318477 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43798 SAMTools SNP 318601 318601 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 318619 318619 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43798 SAMTools SNP 326598 326598 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43798 SAMTools SNP 327217 327217 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold43798 SAMTools SNP 327703 327703 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C26%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.31%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C99:99 scaffold43804 SAMTools SNP 5464 5464 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 5478 5478 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 28512 28512 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 41530 41530 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43804 SAMTools SNP 41532 41532 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43804 SAMTools SNP 41549 41549 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold43804 SAMTools SNP 44316 44316 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43804 SAMTools SNP 44977 44977 35.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold43804 SAMTools SNP 53393 53393 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 72344 72344 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold43804 SAMTools SNP 72352 72352 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.1%2C0.00011%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold43804 SAMTools SNP 73297 73297 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C36%2C0:69 scaffold43804 SAMTools SNP 73327 73327 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C174:49 scaffold43804 SAMTools SNP 74131 74131 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.67%2C2.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43804 SAMTools SNP 75080 75080 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold43804 SAMTools SNP 95497 95497 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43804 SAMTools SNP 95516 95516 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43804 SAMTools SNP 96544 96544 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold43804 SAMTools SNP 96856 96856 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43804 SAMTools SNP 108503 108503 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 109463 109463 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C222:99 scaffold43804 SAMTools SNP 109475 109475 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold43804 SAMTools SNP 109820 109820 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 109872 109872 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.045%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C188:99 scaffold43804 SAMTools SNP 109907 109907 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C240%2C210:39 scaffold43804 SAMTools SNP 111694 111694 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43804 SAMTools SNP 111697 111697 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 112256 112256 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold43804 SAMTools SNP 112844 112844 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43804 SAMTools SNP 112913 112913 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43804 SAMTools SNP 115832 115832 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 115876 115876 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0005%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43804 SAMTools SNP 116127 116127 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold43804 SAMTools SNP 116153 116153 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold43804 SAMTools SNP 116318 116318 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold43804 SAMTools SNP 118036 118036 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43804 SAMTools SNP 118069 118069 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43804 SAMTools SNP 118247 118247 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43804 SAMTools SNP 120741 120741 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43804 SAMTools SNP 121035 121035 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43804 SAMTools SNP 121556 121556 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43804 SAMTools SNP 124463 124463 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43804 SAMTools SNP 124524 124524 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold43804 SAMTools SNP 124566 124566 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43804 SAMTools SNP 124791 124791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold43804 SAMTools SNP 126765 126765 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold43804 SAMTools SNP 129278 129278 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43804 SAMTools SNP 129307 129307 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43804 SAMTools SNP 129351 129351 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C54%2C0:99 scaffold43804 SAMTools SNP 143865 143865 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.025%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C154:99 scaffold43804 SAMTools SNP 144273 144273 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43804 SAMTools SNP 146355 146355 8.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43804 SAMTools SNP 150255 150255 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43804 SAMTools SNP 151710 151710 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.52%2C0.00015%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C250:53 scaffold43804 SAMTools SNP 162833 162833 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C90%2C0:99 scaffold43804 SAMTools SNP 163018 163018 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C13%2C29%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.47%2C3.7e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43804 SAMTools SNP 163040 163040 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C255%2C0:99 scaffold43804 SAMTools SNP 163125 163125 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold43804 SAMTools SNP 163271 163271 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C20%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C196%2C0:99 scaffold43804 SAMTools SNP 163466 163466 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43804 SAMTools SNP 163473 163473 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43804 SAMTools SNP 171476 171476 219 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D604%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C255%2C0%2C244%2C255%2C241:99 scaffold43804 SAMTools SNP 171935 171935 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C48%2C0:93 scaffold43804 SAMTools SNP 172085 172085 98.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.3%2C2e-15%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C10%2C0:17 scaffold43804 SAMTools SNP 172096 172096 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C69%2C0:99 scaffold43804 SAMTools SNP 175977 175977 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43804 SAMTools SNP 175994 175994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43804 SAMTools SNP 176520 176520 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold43804 SAMTools SNP 177226 177226 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold43804 SAMTools SNP 177227 177227 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43804 SAMTools SNP 177237 177237 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43804 SAMTools SNP 177669 177669 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43804 SAMTools SNP 177690 177690 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43804 SAMTools SNP 177738 177738 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43804 SAMTools SNP 177752 177752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43804 SAMTools SNP 178842 178842 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold43804 SAMTools SNP 178868 178868 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43804 SAMTools SNP 181321 181321 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43804 SAMTools SNP 181345 181345 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.41%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 182408 182408 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 182435 182435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43804 SAMTools SNP 182469 182469 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 183558 183558 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43804 SAMTools SNP 183726 183726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43804 SAMTools SNP 184324 184324 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43804 SAMTools SNP 184345 184345 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43804 SAMTools SNP 184551 184551 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43804 SAMTools SNP 184608 184608 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C23%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold43804 SAMTools SNP 184629 184629 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43804 SAMTools SNP 184638 184638 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43804 SAMTools SNP 184984 184984 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43804 SAMTools SNP 185013 185013 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43804 SAMTools SNP 185981 185981 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C238:99 scaffold43804 SAMTools SNP 186092 186092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43804 SAMTools SNP 186191 186191 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43804 SAMTools SNP 186523 186523 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 186958 186958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C18%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.33%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 187552 187552 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C29%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.56%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43804 SAMTools SNP 187594 187594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C47%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 187612 187612 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43804 SAMTools SNP 188492 188492 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C2%2C110%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 188504 188504 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C54%2C96%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 190847 190847 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 190895 190895 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.27%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 190935 190935 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43804 SAMTools SNP 191284 191284 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 194850 194850 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C18%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold43804 SAMTools SNP 195884 195884 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0078%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C69:72 scaffold43804 SAMTools SNP 215715 215715 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C98:99 scaffold43804 SAMTools SNP 216788 216788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43804 SAMTools SNP 216811 216811 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43804 SAMTools SNP 216964 216964 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 216968 216968 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43804 SAMTools SNP 218097 218097 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.03%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43804 SAMTools SNP 218105 218105 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43804 SAMTools SNP 218357 218357 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0027%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C157:85 scaffold43804 SAMTools SNP 223107 223107 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C13%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.52%2C4.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold43804 SAMTools SNP 223267 223267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C5.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43804 SAMTools SNP 224859 224859 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1.3e-12%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C202:71 scaffold43804 SAMTools SNP 225067 225067 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.095%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C180:74 scaffold43804 SAMTools SNP 225171 225171 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.8e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43804 SAMTools SNP 225364 225364 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.00021%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C178:68 scaffold43804 SAMTools SNP 228883 228883 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.017%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43804 SAMTools SNP 233297 233297 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C0.069%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C158:99 scaffold43804 SAMTools SNP 235188 235188 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43804 SAMTools SNP 237606 237606 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43804 SAMTools SNP 237651 237651 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0021%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43804 SAMTools SNP 238038 238038 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold43804 SAMTools SNP 238131 238131 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43804 SAMTools SNP 238329 238329 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43804 SAMTools SNP 238406 238406 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C116:99 scaffold43804 SAMTools SNP 270924 270924 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold43804 SAMTools SNP 308030 308030 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 6617 6617 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.039%2C1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43818 SAMTools SNP 7122 7122 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43818 SAMTools SNP 7131 7131 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.44%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43818 SAMTools SNP 7227 7227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C10%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.4%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold43818 SAMTools SNP 7850 7850 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0017%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43818 SAMTools SNP 7892 7892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43818 SAMTools SNP 8023 8023 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C235:99 scaffold43818 SAMTools SNP 8577 8577 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.47%2C0.0072%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold43818 SAMTools SNP 8586 8586 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.012%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43818 SAMTools SNP 8623 8623 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold43818 SAMTools SNP 8827 8827 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43818 SAMTools SNP 9231 9231 37.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold43818 SAMTools SNP 9380 9380 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C39%2C0:75 scaffold43818 SAMTools SNP 12861 12861 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold43818 SAMTools SNP 12972 12972 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D819%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold43818 SAMTools SNP 12983 12983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D826%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C623%2C72%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.4%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43818 SAMTools SNP 13005 13005 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D604%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C274%2C1%2C251%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-13%2C1.5e-119%2C1%2C8.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 13101 13101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43818 SAMTools SNP 14106 14106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 15146 15146 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C21%2C16%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold43818 SAMTools SNP 21382 21382 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43818 SAMTools SNP 23278 23278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43818 SAMTools SNP 23322 23322 50.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold43818 SAMTools SNP 25989 25989 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43818 SAMTools SNP 26222 26222 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold43818 SAMTools SNP 28672 28672 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43818 SAMTools SNP 28693 28693 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C202:99 scaffold43818 SAMTools SNP 28744 28744 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43818 SAMTools SNP 28762 28762 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.55%2C0.25%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C200:99 scaffold43818 SAMTools SNP 29016 29016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 29045 29045 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold43818 SAMTools SNP 29794 29794 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43818 SAMTools SNP 29822 29822 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00016%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C248:37 scaffold43818 SAMTools SNP 29839 29839 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C42%2C0:81 scaffold43818 SAMTools SNP 30777 30777 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43818 SAMTools SNP 51232 51232 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 51503 51503 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 51551 51551 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 52903 52903 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 57129 57129 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43818 SAMTools SNP 57830 57830 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43818 SAMTools SNP 58461 58461 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43818 SAMTools SNP 63636 63636 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43818 SAMTools SNP 68418 68418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C52%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43818 SAMTools SNP 68775 68775 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C22%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.00012%2C1.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43818 SAMTools SNP 68853 68853 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C9%2C50%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.0094%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 69163 69163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C47%2C11%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C3.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 69431 69431 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C58%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C244%2C0:99 scaffold43818 SAMTools SNP 69569 69569 166 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.32%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43818 SAMTools SNP 72382 72382 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C6%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold43818 SAMTools SNP 81667 81667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43818 SAMTools SNP 82514 82514 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold43818 SAMTools SNP 89242 89242 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold43818 SAMTools SNP 89275 89275 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43818 SAMTools SNP 89317 89317 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43818 SAMTools SNP 90090 90090 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C9%2C0:16 scaffold43818 SAMTools SNP 90123 90123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 90156 90156 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold43818 SAMTools SNP 92477 92477 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43818 SAMTools SNP 92519 92519 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43818 SAMTools SNP 92864 92864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43818 SAMTools SNP 92966 92966 105 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43818 SAMTools SNP 92968 92968 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.25%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43818 SAMTools SNP 93260 93260 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold43818 SAMTools SNP 93267 93267 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold43818 SAMTools SNP 106490 106490 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold43818 SAMTools SNP 106557 106557 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 108250 108250 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C213:99 scaffold43818 SAMTools SNP 108382 108382 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.21%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43818 SAMTools SNP 109025 109025 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43818 SAMTools SNP 110782 110782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold43818 SAMTools SNP 110785 110785 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43818 SAMTools SNP 110848 110848 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C1%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43818 SAMTools SNP 124946 124946 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43818 SAMTools SNP 131808 131808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43818 SAMTools SNP 136515 136515 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C102:99 scaffold43818 SAMTools SNP 136518 136518 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43818 SAMTools SNP 157997 157997 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43818 SAMTools SNP 158012 158012 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 158066 158066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43818 SAMTools SNP 159664 159664 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.67%2C0.0066%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43818 SAMTools SNP 159717 159717 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43818 SAMTools SNP 159721 159721 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.29%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43818 SAMTools SNP 160614 160614 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold43818 SAMTools SNP 166524 166524 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43818 SAMTools SNP 166530 166530 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43818 SAMTools SNP 167564 167564 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold43818 SAMTools SNP 169822 169822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D44%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43818 SAMTools SNP 169833 169833 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D43%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43818 SAMTools SNP 169946 169946 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C1%2C12%3BMQ%3D47%3BFQ%3D62%3BPV4%3D0.00068%2C9.6e-20%2C0.0053%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43818 SAMTools SNP 170350 170350 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold43818 SAMTools SNP 170688 170688 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C93:40 scaffold43818 SAMTools SNP 170796 170796 173 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold43818 SAMTools SNP 171028 171028 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold43818 SAMTools SNP 172684 172684 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.082%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43818 SAMTools SNP 173011 173011 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43818 SAMTools SNP 173973 173973 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C0:75 scaffold43818 SAMTools SNP 173994 173994 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43818 SAMTools SNP 176498 176498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.3%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 179951 179951 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C153:42 scaffold43818 SAMTools SNP 180050 180050 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0044%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C107:41 scaffold43818 SAMTools SNP 180170 180170 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C72%2C0:99 scaffold43818 SAMTools SNP 180259 180259 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43818 SAMTools SNP 180810 180810 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43818 SAMTools SNP 180835 180835 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold43818 SAMTools SNP 181431 181431 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold43818 SAMTools SNP 181446 181446 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold43818 SAMTools SNP 181856 181856 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold43818 SAMTools SNP 184473 184473 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.02%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43818 SAMTools SNP 184529 184529 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43818 SAMTools SNP 190861 190861 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43818 SAMTools SNP 190882 190882 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43818 SAMTools SNP 192556 192556 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.045%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C215:47 scaffold43818 SAMTools SNP 193070 193070 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.073%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 193073 193073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43818 SAMTools SNP 219198 219198 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43818 SAMTools SNP 219199 219199 51.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold43818 SAMTools SNP 225705 225705 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43818 SAMTools SNP 226260 226260 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43818 SAMTools SNP 226299 226299 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 227997 227997 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43818 SAMTools SNP 228235 228235 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.54%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C234:99 scaffold43818 SAMTools SNP 228277 228277 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C171:99 scaffold43818 SAMTools SNP 229255 229255 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 241925 241925 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold43818 SAMTools SNP 245836 245836 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43818 SAMTools SNP 245969 245969 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 246634 246634 28.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold43818 SAMTools SNP 247074 247074 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43818 SAMTools SNP 247204 247204 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43818 SAMTools SNP 247415 247415 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43818 SAMTools SNP 247438 247438 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold43818 SAMTools SNP 247561 247561 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43818 SAMTools SNP 248676 248676 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 249831 249831 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43818 SAMTools SNP 249864 249864 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.062%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43818 SAMTools SNP 250054 250054 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43818 SAMTools SNP 256476 256476 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0250%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D48%3BFQ%3D4.77%3BPV4%3D0.12%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43818 SAMTools SNP 262571 262571 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold43818 SAMTools SNP 262814 262814 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 263276 263276 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43818 SAMTools SNP 263309 263309 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold43818 SAMTools SNP 275275 275275 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43818 SAMTools SNP 277147 277147 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C39%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43818 SAMTools SNP 277179 277179 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.11%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43818 SAMTools SNP 277203 277203 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 277220 277220 133 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C51%2C0:99 scaffold43818 SAMTools SNP 277397 277397 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.064%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43818 SAMTools SNP 277671 277671 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43818 SAMTools SNP 277672 277672 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold43818 SAMTools SNP 289125 289125 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0003%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold43818 SAMTools SNP 289129 289129 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4e-05%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold43818 SAMTools SNP 289297 289297 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C51%2C0:99 scaffold43818 SAMTools SNP 289717 289717 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C78%2C0:99 scaffold43818 SAMTools SNP 289933 289933 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C21%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D2.1e-09%2C2.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43818 SAMTools SNP 295566 295566 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43818 SAMTools SNP 295593 295593 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.024%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold43818 SAMTools SNP 295605 295605 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43818 SAMTools SNP 295844 295844 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43818 SAMTools SNP 295886 295886 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C39:42 scaffold43818 SAMTools SNP 295916 295916 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold43818 SAMTools SNP 296267 296267 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C200:28 scaffold43818 SAMTools SNP 296337 296337 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C221:99 scaffold43818 SAMTools SNP 300326 300326 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 300729 300729 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C48%2C0%2C18%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.033%2C8.6e-11%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43818 SAMTools SNP 300947 300947 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C24%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 302046 302046 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43818 SAMTools SNP 302047 302047 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43818 SAMTools SNP 302881 302881 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C9%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C8.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43818 SAMTools SNP 303831 303831 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 303960 303960 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43818 SAMTools SNP 304147 304147 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C123%2C0:99 scaffold43818 SAMTools SNP 305225 305225 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43818 SAMTools SNP 305249 305249 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43818 SAMTools SNP 305429 305429 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 308538 308538 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 309101 309101 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 309413 309413 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 309764 309764 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43818 SAMTools SNP 311561 311561 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43818 SAMTools SNP 311567 311567 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.53%2C0.28%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43818 SAMTools SNP 311690 311690 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43818 SAMTools SNP 312155 312155 219 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43818 SAMTools SNP 312198 312198 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43818 SAMTools SNP 312279 312279 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43818 SAMTools SNP 312318 312318 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C209:99 scaffold43818 SAMTools SNP 312848 312848 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C46:49 scaffold43818 SAMTools SNP 314416 314416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.27%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold43818 SAMTools SNP 314638 314638 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43818 SAMTools SNP 331083 331083 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 331343 331343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 331370 331370 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43818 SAMTools SNP 331382 331382 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 3183 3183 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 3241 3241 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 51421 51421 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43836 SAMTools SNP 51430 51430 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43836 SAMTools SNP 51460 51460 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43836 SAMTools SNP 54421 54421 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43836 SAMTools SNP 54441 54441 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.074%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C188:39 scaffold43836 SAMTools SNP 57854 57854 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 59327 59327 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 63368 63368 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C1%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C193%2C0:99 scaffold43836 SAMTools SNP 63470 63470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 66033 66033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C11%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.2%2C0.096%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold43836 SAMTools SNP 66749 66749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 67378 67378 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C24%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43836 SAMTools SNP 69487 69487 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.015%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43836 SAMTools SNP 69940 69940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43836 SAMTools SNP 69949 69949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43836 SAMTools SNP 70578 70578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43836 SAMTools SNP 71047 71047 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C0%2C20%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1.1e-06%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold43836 SAMTools SNP 71123 71123 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43836 SAMTools SNP 71330 71330 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C4%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.015%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold43836 SAMTools SNP 72140 72140 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C70%2C1%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.56%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43836 SAMTools SNP 72188 72188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43836 SAMTools SNP 72620 72620 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C21%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.26%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43836 SAMTools SNP 73233 73233 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C9%2C86%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 73913 73913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 74644 74644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43836 SAMTools SNP 74701 74701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43836 SAMTools SNP 75415 75415 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43836 SAMTools SNP 75474 75474 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43836 SAMTools SNP 76551 76551 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 77671 77671 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 77880 77880 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C25%2C0%3BMQ%3D46%3BFQ%3D211%3BPV4%3D0.00084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold43836 SAMTools SNP 78213 78213 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C17%2C1%3BMQ%3D46%3BFQ%3D193%3BPV4%3D0.53%2C0.28%2C0.019%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold43836 SAMTools SNP 78219 78219 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43836 SAMTools SNP 79385 79385 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold43836 SAMTools SNP 85160 85160 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C87%2C0:99 scaffold43836 SAMTools SNP 86115 86115 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0233%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-3.52%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C27:30 scaffold43836 SAMTools SNP 86228 86228 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C10%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C5.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold43836 SAMTools SNP 92553 92553 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C11%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C243:99 scaffold43836 SAMTools SNP 92581 92581 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 93925 93925 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C338%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43836 SAMTools SNP 97204 97204 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43836 SAMTools SNP 97212 97212 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 97307 97307 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C10%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C151%2C0:99 scaffold43836 SAMTools SNP 97638 97638 44.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold43836 SAMTools SNP 97785 97785 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C0:57 scaffold43836 SAMTools SNP 97983 97983 24.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold43836 SAMTools SNP 98137 98137 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43836 SAMTools SNP 98163 98163 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C0%2C173%2C2%3BMQ%3D41%3BFQ%3D109%3BPV4%3D1%2C0.5%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold43836 SAMTools SNP 98178 98178 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D252%2C11%2C81%2C0%3BMQ%3D42%3BFQ%3D23%3BPV4%3D0.073%2C1%2C1.3e-14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43836 SAMTools SNP 98233 98233 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold43836 SAMTools SNP 98272 98272 193 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C49%3BMQ%3D25%3BFQ%3D-230%3BPV4%3D0.46%2C1%2C0.044%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C203%2C0%2C180%2C122%2C198:99 scaffold43836 SAMTools SNP 98307 98307 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C47%2C0%3BMQ%3D38%3BFQ%3D190%3BPV4%3D1%2C0.0085%2C0.0058%2C5.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C232:99 scaffold43836 SAMTools SNP 98385 98385 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1017%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D250%2C449%2C128%2C141%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.00092%2C3.6e-24%2C1%2C9.8e-38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 98406 98406 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D835%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C290%2C30%2C211%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C0.4%2C2.2e-75;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 98463 98463 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 98497 98497 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold43836 SAMTools SNP 98523 98523 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C81:40 scaffold43836 SAMTools SNP 98529 98529 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D10.4%3BPV4%3D1%2C0.00062%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C75:39 scaffold43836 SAMTools SNP 98819 98819 12.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D418%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43836 SAMTools SNP 99298 99298 52.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D958%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold43836 SAMTools SNP 99321 99321 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D967%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C325%2C210%2C194%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0021%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43836 SAMTools SNP 99422 99422 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0057%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.51%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C5:8 scaffold43836 SAMTools SNP 100542 100542 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1296%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C909%2C329%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.27%2C2.6e-16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C255%2C0:99 scaffold43836 SAMTools SNP 100743 100743 113 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D1998%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C75%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C226%2C0%2C144%2C204%2C141:99 scaffold43836 SAMTools SNP 101016 101016 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1164%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C84%2C0:99 scaffold43836 SAMTools SNP 101097 101097 20.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43836 SAMTools SNP 101232 101232 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C401%2C63%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43836 SAMTools SNP 101404 101404 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C255%2C0:99 scaffold43836 SAMTools SNP 145524 145524 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 145540 145540 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43836 SAMTools SNP 145889 145889 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43836 SAMTools SNP 145919 145919 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43836 SAMTools SNP 177402 177402 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43836 SAMTools SNP 191890 191890 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43836 SAMTools SNP 192241 192241 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C19%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.058%2C6.5e-05%2C1%2C9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43836 SAMTools SNP 192259 192259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C32%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.19%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 192276 192276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C43%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 192921 192921 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 193060 193060 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 197239 197239 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 222144 222144 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43836 SAMTools SNP 222210 222210 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43836 SAMTools SNP 241083 241083 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C70%2C8%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold43836 SAMTools SNP 242498 242498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C9%2C98%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43836 SAMTools SNP 242516 242516 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43836 SAMTools SNP 242617 242617 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C26%2C44%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.00044%2C0.00052%2C1%2C8.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold43836 SAMTools SNP 242647 242647 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43836 SAMTools SNP 242722 242722 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C99%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.6e-168%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43836 SAMTools SNP 246243 246243 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43836 SAMTools SNP 246813 246813 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43836 SAMTools SNP 247970 247970 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 252501 252501 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43836 SAMTools SNP 254401 254401 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43836 SAMTools SNP 280992 280992 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43836 SAMTools SNP 301258 301258 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43836 SAMTools SNP 301988 301988 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 988 988 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 1012 1012 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 1081 1081 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 1706 1706 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43842 SAMTools SNP 2870 2870 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.3%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold43842 SAMTools SNP 2879 2879 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43842 SAMTools SNP 2918 2918 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.18%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C115:99 scaffold43842 SAMTools SNP 2948 2948 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold43842 SAMTools SNP 3624 3624 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold43842 SAMTools SNP 3910 3910 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 3937 3937 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43842 SAMTools SNP 13880 13880 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43842 SAMTools SNP 18913 18913 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C6.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C156:40 scaffold43842 SAMTools SNP 19497 19497 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 23881 23881 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43842 SAMTools SNP 23895 23895 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43842 SAMTools SNP 24501 24501 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.029%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43842 SAMTools SNP 24542 24542 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 25538 25538 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43842 SAMTools SNP 25587 25587 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C23%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.2e-27%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C235:99 scaffold43842 SAMTools SNP 26480 26480 7.82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D117%2C0%2C171%2C1%3BMQ%3D5%3BFQ%3D-51%3BPV4%3D1%2C0.00083%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C24%2C0:28 scaffold43842 SAMTools SNP 29199 29199 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C8%2C5%3BMQ%3D21%3BFQ%3D35%3BPV4%3D0.71%2C0.33%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C62:65 scaffold43842 SAMTools SNP 33692 33692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D37%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43842 SAMTools SNP 34056 34056 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C3%2C4%3BMQ%3D39%3BFQ%3D121%3BPV4%3D0.67%2C0.35%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold43842 SAMTools SNP 34065 34065 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D38%3BFQ%3D12.3%3BPV4%3D0.23%2C0.00073%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C195:41 scaffold43842 SAMTools SNP 38706 38706 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 38859 38859 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold43842 SAMTools SNP 38873 38873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43842 SAMTools SNP 40871 40871 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43842 SAMTools SNP 40889 40889 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D48.4%3BPV4%3D0.33%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C84:78 scaffold43842 SAMTools SNP 41227 41227 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 42215 42215 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 42217 42217 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43842 SAMTools SNP 42253 42253 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43842 SAMTools SNP 46337 46337 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43842 SAMTools SNP 46352 46352 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43842 SAMTools SNP 49145 49145 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43842 SAMTools SNP 49392 49392 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43842 SAMTools SNP 49779 49779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43842 SAMTools SNP 49827 49827 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43842 SAMTools SNP 51023 51023 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C12%2C8%3BMQ%3D36%3BFQ%3D177%3BPV4%3D0.5%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold43842 SAMTools SNP 51586 51586 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold43842 SAMTools SNP 51618 51618 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold43842 SAMTools SNP 53442 53442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D46%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43842 SAMTools SNP 55810 55810 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.011%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43842 SAMTools SNP 56314 56314 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43842 SAMTools SNP 58601 58601 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43842 SAMTools SNP 58652 58652 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43842 SAMTools SNP 58703 58703 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43842 SAMTools SNP 58721 58721 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43842 SAMTools SNP 60387 60387 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C49%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 60396 60396 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 60464 60464 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C6.8e-14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C150:39 scaffold43842 SAMTools SNP 60493 60493 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C48:51 scaffold43842 SAMTools SNP 65614 65614 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 65867 65867 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 65915 65915 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 68263 68263 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold43842 SAMTools SNP 68557 68557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43842 SAMTools SNP 69142 69142 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43842 SAMTools SNP 69238 69238 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold43842 SAMTools SNP 72950 72950 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C212:99 scaffold43842 SAMTools SNP 73481 73481 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C253:99 scaffold43842 SAMTools SNP 74548 74548 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 74707 74707 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43842 SAMTools SNP 74708 74708 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.61%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43842 SAMTools SNP 75920 75920 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.11%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43842 SAMTools SNP 79208 79208 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43842 SAMTools SNP 79244 79244 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43842 SAMTools SNP 79256 79256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43842 SAMTools SNP 84415 84415 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold43842 SAMTools SNP 84436 84436 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D47%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43842 SAMTools SNP 84496 84496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C10%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.45%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 85232 85232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43842 SAMTools SNP 85528 85528 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold43842 SAMTools SNP 85546 85546 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C224:76 scaffold43842 SAMTools SNP 85591 85591 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C11%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.59%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C222:99 scaffold43842 SAMTools SNP 87766 87766 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43842 SAMTools SNP 88503 88503 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.046%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C229:34 scaffold43842 SAMTools SNP 89074 89074 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.49%2C0.023%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43842 SAMTools SNP 89459 89459 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C204:99 scaffold43842 SAMTools SNP 89468 89468 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C0.00069%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43842 SAMTools SNP 90175 90175 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold43842 SAMTools SNP 90187 90187 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold43842 SAMTools SNP 90828 90828 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C25%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43842 SAMTools SNP 91361 91361 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 91403 91403 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43842 SAMTools SNP 91418 91418 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.0046%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43842 SAMTools SNP 91481 91481 186 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.17%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C237:99 scaffold43842 SAMTools SNP 91826 91826 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43842 SAMTools SNP 91891 91891 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43842 SAMTools SNP 92464 92464 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00087%2C0.095%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 93133 93133 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 93987 93987 80.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold43842 SAMTools SNP 94701 94701 57.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold43842 SAMTools SNP 94986 94986 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43842 SAMTools SNP 95062 95062 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.58%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C249:99 scaffold43842 SAMTools SNP 95482 95482 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43842 SAMTools SNP 95874 95874 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43842 SAMTools SNP 95973 95973 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43842 SAMTools SNP 96179 96179 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold43842 SAMTools SNP 96188 96188 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43842 SAMTools SNP 96255 96255 13.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold43842 SAMTools SNP 97533 97533 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43842 SAMTools SNP 97617 97617 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C8.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43842 SAMTools SNP 99256 99256 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43842 SAMTools SNP 100429 100429 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43842 SAMTools SNP 100472 100472 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.00033%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold43842 SAMTools SNP 100973 100973 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C205:99 scaffold43842 SAMTools SNP 100986 100986 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C121:99 scaffold43842 SAMTools SNP 101010 101010 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold43842 SAMTools SNP 104466 104466 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43842 SAMTools SNP 104520 104520 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43842 SAMTools SNP 105074 105074 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43842 SAMTools SNP 105077 105077 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43842 SAMTools SNP 105101 105101 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold43842 SAMTools SNP 105508 105508 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.0078%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold43842 SAMTools SNP 105547 105547 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 105548 105548 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43842 SAMTools SNP 105898 105898 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.6%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43842 SAMTools SNP 105903 105903 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43842 SAMTools SNP 107321 107321 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C221:99 scaffold43842 SAMTools SNP 107346 107346 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold43842 SAMTools SNP 107399 107399 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43842 SAMTools SNP 107424 107424 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43842 SAMTools SNP 108041 108041 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43842 SAMTools SNP 108171 108171 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43842 SAMTools SNP 110268 110268 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C3.2e-07%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43842 SAMTools SNP 111282 111282 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43842 SAMTools SNP 111303 111303 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 111593 111593 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43842 SAMTools SNP 111599 111599 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 111700 111700 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C176:99 scaffold43842 SAMTools SNP 124600 124600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43842 SAMTools SNP 124776 124776 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C75%2C0:99 scaffold43842 SAMTools SNP 125692 125692 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C114%2C0:99 scaffold43842 SAMTools SNP 126708 126708 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C72%2C0:99 scaffold43842 SAMTools SNP 130417 130417 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 130441 130441 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 130671 130671 24.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C11%2C0%3BMQ%3D42%3BFQ%3D-47%3BPV4%3D1%2C5.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C20%2C0:36 scaffold43842 SAMTools SNP 130681 130681 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C2%3BMQ%3D42%3BFQ%3D20.1%3BPV4%3D0.032%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C216:50 scaffold43842 SAMTools SNP 130682 130682 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C2%3BMQ%3D42%3BFQ%3D20.1%3BPV4%3D0.032%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C216:50 scaffold43842 SAMTools SNP 130768 130768 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C36%2C0:69 scaffold43842 SAMTools SNP 131561 131561 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43842 SAMTools SNP 133941 133941 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43842 SAMTools SNP 134537 134537 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold43842 SAMTools SNP 135498 135498 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43842 SAMTools SNP 136099 136099 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43842 SAMTools SNP 136216 136216 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold43842 SAMTools SNP 147410 147410 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 147976 147976 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43842 SAMTools SNP 149293 149293 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold43842 SAMTools SNP 157066 157066 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 160418 160418 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold43842 SAMTools SNP 163254 163254 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold43842 SAMTools SNP 163273 163273 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold43842 SAMTools SNP 164536 164536 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold43842 SAMTools SNP 164599 164599 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43842 SAMTools SNP 164623 164623 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43842 SAMTools SNP 165057 165057 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 165396 165396 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 166058 166058 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D1%2C0.2%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold43842 SAMTools SNP 166531 166531 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 166538 166538 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 167207 167207 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43842 SAMTools SNP 167211 167211 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43842 SAMTools SNP 167673 167673 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold43842 SAMTools SNP 169050 169050 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0041%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C80:30 scaffold43842 SAMTools SNP 169949 169949 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold43842 SAMTools SNP 171755 171755 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43842 SAMTools SNP 172338 172338 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 173909 173909 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 173932 173932 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 174919 174919 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 174933 174933 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 175059 175059 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 175669 175669 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 175858 175858 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43842 SAMTools SNP 175906 175906 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 175915 175915 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43842 SAMTools SNP 176938 176938 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43842 SAMTools SNP 176941 176941 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43842 SAMTools SNP 176942 176942 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43842 SAMTools SNP 177450 177450 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43842 SAMTools SNP 178325 178325 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43842 SAMTools SNP 178636 178636 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold43842 SAMTools SNP 179241 179241 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43842 SAMTools SNP 179349 179349 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 179352 179352 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43842 SAMTools SNP 179358 179358 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold43842 SAMTools SNP 180187 180187 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold43842 SAMTools SNP 180659 180659 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43842 SAMTools SNP 180727 180727 18.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold43842 SAMTools SNP 181111 181111 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold43842 SAMTools SNP 181135 181135 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43842 SAMTools SNP 182376 182376 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold43842 SAMTools SNP 184074 184074 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 186473 186473 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C230:78 scaffold43842 SAMTools SNP 186500 186500 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43842 SAMTools SNP 186708 186708 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C15%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold43842 SAMTools SNP 187100 187100 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold43842 SAMTools SNP 188629 188629 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 188885 188885 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 188894 188894 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 190394 190394 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 190442 190442 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43842 SAMTools SNP 190471 190471 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold43842 SAMTools SNP 195296 195296 9.63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold43842 SAMTools SNP 195307 195307 3.07 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:29%2C1%2C0:6 scaffold43842 SAMTools SNP 196086 196086 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43842 SAMTools SNP 196099 196099 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43842 SAMTools SNP 198381 198381 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold43842 SAMTools SNP 199016 199016 39.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold43842 SAMTools SNP 201770 201770 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 202435 202435 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold43842 SAMTools SNP 209152 209152 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43842 SAMTools SNP 226539 226539 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43842 SAMTools SNP 242676 242676 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold43842 SAMTools SNP 259675 259675 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C2.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C162:78 scaffold43842 SAMTools SNP 259824 259824 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C181:99 scaffold43842 SAMTools SNP 261321 261321 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43842 SAMTools SNP 261547 261547 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0056%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43842 SAMTools SNP 261622 261622 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 262111 262111 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43842 SAMTools SNP 263372 263372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C23%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43842 SAMTools SNP 264097 264097 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43842 SAMTools SNP 264145 264145 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43842 SAMTools SNP 265791 265791 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43842 SAMTools SNP 266893 266893 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43842 SAMTools SNP 266943 266943 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.49%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold43842 SAMTools SNP 266958 266958 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43842 SAMTools SNP 271644 271644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C29%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D0.44%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold43842 SAMTools SNP 273127 273127 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.2e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold43842 SAMTools SNP 277678 277678 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43842 SAMTools SNP 277698 277698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43842 SAMTools SNP 279330 279330 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold43842 SAMTools SNP 279364 279364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43842 SAMTools SNP 279926 279926 216 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C66%2C0%2C246%2C50%2C243:99 scaffold43842 SAMTools SNP 279986 279986 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.53%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43842 SAMTools SNP 280839 280839 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C10%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43842 SAMTools SNP 280896 280896 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43842 SAMTools SNP 282099 282099 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 287008 287008 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C36%2C5%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.13%2C0.02%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43842 SAMTools SNP 287027 287027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C28%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43842 SAMTools SNP 287048 287048 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 288973 288973 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold43842 SAMTools SNP 289014 289014 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43842 SAMTools SNP 289023 289023 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold43842 SAMTools SNP 289563 289563 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43842 SAMTools SNP 290076 290076 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43842 SAMTools SNP 292579 292579 87.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold43842 SAMTools SNP 294595 294595 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 295716 295716 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 295720 295720 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C37%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.017%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C116:99 scaffold43842 SAMTools SNP 295731 295731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43842 SAMTools SNP 295812 295812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C11%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C9.3e-17%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 295860 295860 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.019%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 296273 296273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43842 SAMTools SNP 297547 297547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 297589 297589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43842 SAMTools SNP 300710 300710 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold43842 SAMTools SNP 300897 300897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C17%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold43842 SAMTools SNP 301105 301105 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43842 SAMTools SNP 302048 302048 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C66%2C35%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 302078 302078 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C75%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.24%2C1%2C1.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43842 SAMTools SNP 302569 302569 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43842 SAMTools SNP 307846 307846 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D15%3BFQ%3D-30%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43842 SAMTools SNP 308221 308221 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43842 SAMTools SNP 308331 308331 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C8%3BMQ%3D30%3BFQ%3D8.65%3BPV4%3D0.0061%2C0.23%2C0.0013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C96:36 scaffold43842 SAMTools SNP 308348 308348 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D23%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43842 SAMTools SNP 317998 317998 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43842 SAMTools SNP 318036 318036 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43844 SAMTools SNP 1557 1557 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43844 SAMTools SNP 46853 46853 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 46914 46914 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 48831 48831 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 69299 69299 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43844 SAMTools SNP 69525 69525 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43844 SAMTools SNP 71408 71408 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43844 SAMTools SNP 73117 73117 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43844 SAMTools SNP 175702 175702 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.43%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold43844 SAMTools SNP 179637 179637 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D42%3BFQ%3D111%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C195:99 scaffold43844 SAMTools SNP 179935 179935 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold43844 SAMTools SNP 179965 179965 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C27:30 scaffold43844 SAMTools SNP 179968 179968 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C30:33 scaffold43844 SAMTools SNP 180381 180381 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43844 SAMTools SNP 192370 192370 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.45%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold43844 SAMTools SNP 192803 192803 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43844 SAMTools SNP 192953 192953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43844 SAMTools SNP 192965 192965 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold43844 SAMTools SNP 193092 193092 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 193459 193459 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.16%2C0.43%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43844 SAMTools SNP 196185 196185 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43844 SAMTools SNP 196611 196611 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43844 SAMTools SNP 203143 203143 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43844 SAMTools SNP 205748 205748 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold43844 SAMTools SNP 233051 233051 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43844 SAMTools SNP 233567 233567 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.053%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43844 SAMTools SNP 233606 233606 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43844 SAMTools SNP 233657 233657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43844 SAMTools SNP 234157 234157 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 234655 234655 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold43844 SAMTools SNP 234706 234706 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0088%2C0.48%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold43844 SAMTools SNP 234737 234737 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.002%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold43844 SAMTools SNP 234983 234983 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43844 SAMTools SNP 234998 234998 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43844 SAMTools SNP 235789 235789 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43844 SAMTools SNP 235841 235841 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43844 SAMTools SNP 235898 235898 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.003%2C0.32%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43844 SAMTools SNP 236870 236870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold43844 SAMTools SNP 237254 237254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43844 SAMTools SNP 237282 237282 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43844 SAMTools SNP 237380 237380 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43844 SAMTools SNP 237422 237422 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43844 SAMTools SNP 238946 238946 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold43844 SAMTools SNP 247641 247641 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C39%2C0:75 scaffold43844 SAMTools SNP 248496 248496 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold43844 SAMTools SNP 249138 249138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43844 SAMTools SNP 249189 249189 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43844 SAMTools SNP 249599 249599 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.66%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43844 SAMTools SNP 249620 249620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 249674 249674 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.12%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C235:99 scaffold43844 SAMTools SNP 250195 250195 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43844 SAMTools SNP 253135 253135 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43844 SAMTools SNP 253758 253758 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43844 SAMTools SNP 253809 253809 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 255861 255861 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 256547 256547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43844 SAMTools SNP 256958 256958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold43844 SAMTools SNP 256976 256976 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43844 SAMTools SNP 259295 259295 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43844 SAMTools SNP 259316 259316 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43844 SAMTools SNP 261798 261798 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 261829 261829 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43844 SAMTools SNP 262441 262441 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43844 SAMTools SNP 262576 262576 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.43%2C0.012%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C136:71 scaffold43844 SAMTools SNP 264748 264748 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold43844 SAMTools SNP 269543 269543 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold43844 SAMTools SNP 279464 279464 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43844 SAMTools SNP 279757 279757 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C2%2C49%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-32%2C2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 285874 285874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-06%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 285885 285885 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 288318 288318 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C11%2C86%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 288422 288422 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C1%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C4.3e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43844 SAMTools SNP 288637 288637 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold43844 SAMTools SNP 298544 298544 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43844 SAMTools SNP 314543 314543 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold43844 SAMTools SNP 317974 317974 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43844 SAMTools SNP 322790 322790 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43844 SAMTools SNP 323428 323428 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43868 SAMTools SNP 14164 14164 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 14893 14893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 14950 14950 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C94%2C17%2C54%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.42%2C1.4e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold43868 SAMTools SNP 15013 15013 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C36%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 15542 15542 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C81%2C2%2C30%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43868 SAMTools SNP 15560 15560 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C70%2C7%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 15887 15887 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.28%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold43868 SAMTools SNP 16187 16187 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.67%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold43868 SAMTools SNP 16202 16202 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43868 SAMTools SNP 16205 16205 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.025%2C0.005%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43868 SAMTools SNP 16996 16996 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C51%2C80%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 17324 17324 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C11%2C51%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold43868 SAMTools SNP 17446 17446 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold43868 SAMTools SNP 18805 18805 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold43868 SAMTools SNP 19526 19526 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43868 SAMTools SNP 19583 19583 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold43868 SAMTools SNP 20405 20405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43868 SAMTools SNP 20468 20468 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold43868 SAMTools SNP 22225 22225 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43868 SAMTools SNP 22938 22938 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 23010 23010 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C4.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43868 SAMTools SNP 23204 23204 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0018%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43868 SAMTools SNP 23219 23219 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.082%2C1%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43868 SAMTools SNP 23222 23222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 23246 23246 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43868 SAMTools SNP 24403 24403 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43868 SAMTools SNP 24430 24430 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.075%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43868 SAMTools SNP 24749 24749 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43868 SAMTools SNP 24755 24755 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold43868 SAMTools SNP 24767 24767 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C194:63 scaffold43868 SAMTools SNP 24776 24776 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C228:50 scaffold43868 SAMTools SNP 24795 24795 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43868 SAMTools SNP 24824 24824 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C245:99 scaffold43868 SAMTools SNP 25007 25007 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold43868 SAMTools SNP 25022 25022 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C9.8e-31%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C245:56 scaffold43868 SAMTools SNP 25070 25070 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.0012%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43868 SAMTools SNP 27844 27844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43868 SAMTools SNP 27872 27872 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C107:99 scaffold43868 SAMTools SNP 27884 27884 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43868 SAMTools SNP 30348 30348 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C116:99 scaffold43868 SAMTools SNP 30704 30704 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 30725 30725 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 30728 30728 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.059%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 30912 30912 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43868 SAMTools SNP 30936 30936 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43868 SAMTools SNP 30951 30951 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43868 SAMTools SNP 31239 31239 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.011%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold43868 SAMTools SNP 31255 31255 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43868 SAMTools SNP 31264 31264 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold43868 SAMTools SNP 31784 31784 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.3%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C152:98 scaffold43868 SAMTools SNP 31844 31844 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D84.7%3BPV4%3D0.061%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C124:99 scaffold43868 SAMTools SNP 31850 31850 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43868 SAMTools SNP 32254 32254 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold43868 SAMTools SNP 32396 32396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43868 SAMTools SNP 32909 32909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C11%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43868 SAMTools SNP 32915 32915 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.019%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43868 SAMTools SNP 33014 33014 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.27%2C0.0095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C224:94 scaffold43868 SAMTools SNP 33368 33368 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold43868 SAMTools SNP 33386 33386 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold43868 SAMTools SNP 33398 33398 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43868 SAMTools SNP 33694 33694 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43868 SAMTools SNP 33934 33934 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43868 SAMTools SNP 34526 34526 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43868 SAMTools SNP 34643 34643 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 35602 35602 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 35807 35807 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C9.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold43868 SAMTools SNP 35828 35828 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43868 SAMTools SNP 36207 36207 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C226:99 scaffold43868 SAMTools SNP 36436 36436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43868 SAMTools SNP 36759 36759 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43868 SAMTools SNP 36776 36776 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 36803 36803 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43868 SAMTools SNP 37019 37019 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 37062 37062 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43868 SAMTools SNP 37101 37101 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43868 SAMTools SNP 37575 37575 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43868 SAMTools SNP 38171 38171 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 38178 38178 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 38633 38633 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold43868 SAMTools SNP 39256 39256 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold43868 SAMTools SNP 40242 40242 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C218:99 scaffold43868 SAMTools SNP 40263 40263 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold43868 SAMTools SNP 41616 41616 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 41975 41975 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C21%2C0:39 scaffold43868 SAMTools SNP 42453 42453 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold43868 SAMTools SNP 42977 42977 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C110:54 scaffold43868 SAMTools SNP 43095 43095 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43868 SAMTools SNP 45237 45237 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 45256 45256 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 45686 45686 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43868 SAMTools SNP 45716 45716 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43868 SAMTools SNP 45734 45734 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 46456 46456 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43868 SAMTools SNP 46626 46626 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 46653 46653 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 48666 48666 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C35%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D3.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43868 SAMTools SNP 49029 49029 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43868 SAMTools SNP 50208 50208 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C224:49 scaffold43868 SAMTools SNP 50212 50212 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43868 SAMTools SNP 50254 50254 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.24%2C3.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43868 SAMTools SNP 50689 50689 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C19%2C44%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 50755 50755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C44%2C98%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C2.2e-53%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 50806 50806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C67%2C23%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 52437 52437 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C35%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C58%2C0:99 scaffold43868 SAMTools SNP 52443 52443 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43868 SAMTools SNP 60848 60848 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 61376 61376 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43868 SAMTools SNP 66895 66895 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C1%2C42%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C2.7e-71%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold43868 SAMTools SNP 67241 67241 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D3%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C42%2C0:35 scaffold43868 SAMTools SNP 119871 119871 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold43868 SAMTools SNP 119900 119900 45.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold43868 SAMTools SNP 120510 120510 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 120525 120525 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43868 SAMTools SNP 120763 120763 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43868 SAMTools SNP 132399 132399 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 146480 146480 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold43868 SAMTools SNP 146504 146504 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C99:43 scaffold43868 SAMTools SNP 147750 147750 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C14%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C195:99 scaffold43868 SAMTools SNP 163744 163744 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 164167 164167 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C237:99 scaffold43868 SAMTools SNP 164205 164205 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43868 SAMTools SNP 168337 168337 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 169697 169697 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43868 SAMTools SNP 169909 169909 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C119:40 scaffold43868 SAMTools SNP 170012 170012 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43868 SAMTools SNP 170141 170141 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43868 SAMTools SNP 170273 170273 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 174754 174754 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.5e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C243:43 scaffold43868 SAMTools SNP 175447 175447 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 176206 176206 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43868 SAMTools SNP 176798 176798 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C33%2C0:63 scaffold43868 SAMTools SNP 176900 176900 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43868 SAMTools SNP 177316 177316 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43868 SAMTools SNP 177327 177327 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43868 SAMTools SNP 177386 177386 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 177824 177824 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43868 SAMTools SNP 177831 177831 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C67%2C0:99 scaffold43868 SAMTools SNP 178349 178349 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C196%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 178430 178430 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C35%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C178%2C0:99 scaffold43868 SAMTools SNP 178433 178433 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 178475 178475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C34%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 178948 178948 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 178960 178960 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C26%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43868 SAMTools SNP 179362 179362 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 179492 179492 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C2%2C12%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C9e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold43868 SAMTools SNP 179677 179677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43868 SAMTools SNP 179725 179725 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 179749 179749 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 179752 179752 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 180251 180251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C80%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.00099%2C1%2C2.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold43868 SAMTools SNP 181124 181124 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43868 SAMTools SNP 181503 181503 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43868 SAMTools SNP 181845 181845 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C143%2C1%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 182041 182041 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 182059 182059 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 182137 182137 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C4%2C4%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.42%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold43868 SAMTools SNP 182301 182301 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C9%2C36%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.018%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold43868 SAMTools SNP 182319 182319 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C37%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00035%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43868 SAMTools SNP 182396 182396 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C196:99 scaffold43868 SAMTools SNP 182403 182403 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold43868 SAMTools SNP 183507 183507 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43868 SAMTools SNP 184030 184030 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C13%2C89%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0027%2C2.2e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43868 SAMTools SNP 187054 187054 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43868 SAMTools SNP 187139 187139 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C7.6e-14%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C184:41 scaffold43868 SAMTools SNP 188451 188451 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43868 SAMTools SNP 188465 188465 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43868 SAMTools SNP 190354 190354 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43868 SAMTools SNP 190369 190369 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 194962 194962 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.7e-30%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C222:40 scaffold43868 SAMTools SNP 195037 195037 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C18%2C8%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43868 SAMTools SNP 195301 195301 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 196039 196039 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C12%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D2.6e-05%2C1.1e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43868 SAMTools SNP 196071 196071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 196146 196146 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 196622 196622 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.36%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold43868 SAMTools SNP 196631 196631 212 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.42%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43868 SAMTools SNP 196637 196637 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C48%2C0:93 scaffold43868 SAMTools SNP 196661 196661 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C30%2C0:57 scaffold43868 SAMTools SNP 196664 196664 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.43%2C1%2C6.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C214:99 scaffold43868 SAMTools SNP 196682 196682 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.07%2C1%2C6.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C222:99 scaffold43868 SAMTools SNP 196694 196694 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C12%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.48%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold43868 SAMTools SNP 197539 197539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 198581 198581 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C0.26%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 200437 200437 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C150:51 scaffold43868 SAMTools SNP 200782 200782 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C8%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0003%2C2.8e-06%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43868 SAMTools SNP 200962 200962 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43868 SAMTools SNP 201982 201982 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 233828 233828 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C246:99 scaffold43868 SAMTools SNP 234032 234032 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold43868 SAMTools SNP 235335 235335 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 236315 236315 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 239142 239142 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D47%3BFQ%3D92%3BPV4%3D0.46%2C0.15%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C119:99 scaffold43868 SAMTools SNP 239166 239166 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.089%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold43868 SAMTools SNP 253065 253065 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold43868 SAMTools SNP 253073 253073 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43868 SAMTools SNP 253234 253234 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold43868 SAMTools SNP 253327 253327 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43868 SAMTools SNP 254638 254638 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D47%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C183:99 scaffold43868 SAMTools SNP 261611 261611 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 261687 261687 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D48%3BFQ%3D104%3BPV4%3D1%2C0.094%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C171:99 scaffold43868 SAMTools SNP 261864 261864 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 261879 261879 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43868 SAMTools SNP 262406 262406 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43868 SAMTools SNP 265259 265259 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43868 SAMTools SNP 265768 265768 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43868 SAMTools SNP 266925 266925 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43868 SAMTools SNP 268359 268359 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 268369 268369 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43868 SAMTools SNP 269017 269017 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 269058 269058 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 270132 270132 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 270234 270234 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 270310 270310 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 270475 270475 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43868 SAMTools SNP 272154 272154 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C184:99 scaffold43868 SAMTools SNP 275089 275089 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C156%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 275603 275603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 275729 275729 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43868 SAMTools SNP 276154 276154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43868 SAMTools SNP 276169 276169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43868 SAMTools SNP 276550 276550 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C5%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43868 SAMTools SNP 276564 276564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 277045 277045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 277448 277448 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C14%2C12%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.79%2C4.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold43868 SAMTools SNP 277918 277918 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C89%2C17%2C43%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.86%2C4.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold43868 SAMTools SNP 277998 277998 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold43868 SAMTools SNP 281998 281998 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold43868 SAMTools SNP 282039 282039 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.38%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C182:69 scaffold43868 SAMTools SNP 282043 282043 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold43868 SAMTools SNP 282079 282079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.62%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold43868 SAMTools SNP 283522 283522 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold43868 SAMTools SNP 283587 283587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43868 SAMTools SNP 284021 284021 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43868 SAMTools SNP 286501 286501 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43868 SAMTools SNP 299547 299547 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43868 SAMTools SNP 309334 309334 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43868 SAMTools SNP 313590 313590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 313626 313626 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C12%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43868 SAMTools SNP 315130 315130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43868 SAMTools SNP 315723 315723 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C132%2C0:99 scaffold43868 SAMTools SNP 315805 315805 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43868 SAMTools SNP 315851 315851 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C21%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0038%2C9.4e-26%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C53:56 scaffold43868 SAMTools SNP 315986 315986 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D25%3BPV4%3D2.1e-09%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C242:55 scaffold43868 SAMTools SNP 316079 316079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C28%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43868 SAMTools SNP 316256 316256 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C42%2C0:81 scaffold43868 SAMTools SNP 316384 316384 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C31%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C205%2C0:99 scaffold43868 SAMTools SNP 316512 316512 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C13%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43868 SAMTools SNP 316655 316655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43868 SAMTools SNP 317270 317270 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C33%2C0:63 scaffold43868 SAMTools SNP 317630 317630 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D49%3BFQ%3D18.1%3BPV4%3D1%2C5.1e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C236:48 scaffold43868 SAMTools SNP 317709 317709 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C5%2C13%3BMQ%3D44%3BFQ%3D35%3BPV4%3D0.69%2C1.9e-07%2C0.27%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C219:65 scaffold43868 SAMTools SNP 328631 328631 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 328655 328655 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 329143 329143 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43868 SAMTools SNP 329553 329553 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C6%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43868 SAMTools SNP 329562 329562 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43868 SAMTools SNP 329577 329577 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.027%2C8.1e-05%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43868 SAMTools SNP 329613 329613 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43868 SAMTools SNP 331514 331514 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold43868 SAMTools SNP 331544 331544 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.54%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43868 SAMTools SNP 333621 333621 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C57%2C0:99 scaffold43868 SAMTools SNP 333996 333996 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.067%2C1.1e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C74:48 scaffold43868 SAMTools SNP 334017 334017 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C27%2C0:51 scaffold43868 SAMTools SNP 334599 334599 40.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold43868 SAMTools SNP 334702 334702 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0015%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C32:35 scaffold43868 SAMTools SNP 334773 334773 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold43868 SAMTools SNP 334893 334893 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43868 SAMTools SNP 335004 335004 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.7%2C5.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43868 SAMTools SNP 335286 335286 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43868 SAMTools SNP 360817 360817 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.37%2C5.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43868 SAMTools SNP 361504 361504 13.7 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold43868 SAMTools SNP 363660 363660 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43868 SAMTools SNP 363915 363915 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D40%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C245:28 scaffold43868 SAMTools SNP 364346 364346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C37%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43868 SAMTools SNP 364457 364457 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43868 SAMTools SNP 364464 364464 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43878 SAMTools SNP 36170 36170 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43878 SAMTools SNP 36414 36414 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43878 SAMTools SNP 36744 36744 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43878 SAMTools SNP 36837 36837 88.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold43878 SAMTools SNP 37433 37433 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43878 SAMTools SNP 158448 158448 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 158464 158464 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 159096 159096 19.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold43878 SAMTools SNP 159563 159563 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 159796 159796 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 160057 160057 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43878 SAMTools SNP 160987 160987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.46%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold43878 SAMTools SNP 163207 163207 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D47%3BFQ%3D52%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C206:82 scaffold43878 SAMTools SNP 163379 163379 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D30%3BFQ%3D37.5%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C74:67 scaffold43878 SAMTools SNP 164784 164784 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43878 SAMTools SNP 164811 164811 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C41:44 scaffold43878 SAMTools SNP 164903 164903 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C7%3BMQ%3D45%3BFQ%3D4.13%3BPV4%3D1%2C1.2e-10%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C29:32 scaffold43878 SAMTools SNP 167168 167168 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold43878 SAMTools SNP 167176 167176 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold43878 SAMTools SNP 169196 169196 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43878 SAMTools SNP 169238 169238 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43878 SAMTools SNP 169281 169281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold43878 SAMTools SNP 169543 169543 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C19%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43878 SAMTools SNP 169568 169568 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C29%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43878 SAMTools SNP 169764 169764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43878 SAMTools SNP 171537 171537 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43878 SAMTools SNP 171543 171543 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.00013%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43878 SAMTools SNP 171923 171923 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43878 SAMTools SNP 172189 172189 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43878 SAMTools SNP 172692 172692 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43878 SAMTools SNP 174775 174775 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 174828 174828 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.00049%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C29:32 scaffold43878 SAMTools SNP 174838 174838 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 174874 174874 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43878 SAMTools SNP 174883 174883 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43878 SAMTools SNP 175315 175315 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold43878 SAMTools SNP 175395 175395 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43878 SAMTools SNP 175516 175516 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43878 SAMTools SNP 175546 175546 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43878 SAMTools SNP 175902 175902 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43878 SAMTools SNP 176894 176894 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43878 SAMTools SNP 176934 176934 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43878 SAMTools SNP 177904 177904 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43878 SAMTools SNP 177923 177923 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 204552 204552 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D41.8%3BPV4%3D1%2C9.5e-07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C69:72 scaffold43878 SAMTools SNP 207075 207075 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 208186 208186 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43878 SAMTools SNP 246363 246363 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 270387 270387 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 276130 276130 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C231:72 scaffold43878 SAMTools SNP 276162 276162 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C177:99 scaffold43878 SAMTools SNP 277559 277559 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C68%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold43878 SAMTools SNP 277599 277599 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.12%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C242:99 scaffold43878 SAMTools SNP 278617 278617 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.46%2C0.033%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C180:99 scaffold43878 SAMTools SNP 280961 280961 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 280970 280970 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43878 SAMTools SNP 291462 291462 55.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold43878 SAMTools SNP 291770 291770 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold43878 SAMTools SNP 291827 291827 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43878 SAMTools SNP 292004 292004 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 292040 292040 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold43878 SAMTools SNP 296147 296147 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C10%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C7e-06%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C246:99 scaffold43878 SAMTools SNP 296153 296153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C22%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43878 SAMTools SNP 296354 296354 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.1%2C1.1e-05%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C220:82 scaffold43878 SAMTools SNP 296618 296618 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D43.8%3BPV4%3D1%2C5.9e-16%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C85:74 scaffold43878 SAMTools SNP 297123 297123 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.18%2C7.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C224:64 scaffold43878 SAMTools SNP 297189 297189 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold43878 SAMTools SNP 297483 297483 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.33%2C5.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C160:99 scaffold43878 SAMTools SNP 297616 297616 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C5.7e-07%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43878 SAMTools SNP 300761 300761 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43878 SAMTools SNP 301290 301290 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold43878 SAMTools SNP 301312 301312 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43878 SAMTools SNP 301465 301465 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold43878 SAMTools SNP 302058 302058 88 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold43878 SAMTools SNP 307405 307405 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43878 SAMTools SNP 315676 315676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C61%2C261%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43878 SAMTools SNP 316517 316517 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C139%2C22%2C136%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.61%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 319445 319445 9.51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D10%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C81%2C0:60 scaffold43878 SAMTools SNP 319474 319474 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold43878 SAMTools SNP 323854 323854 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43878 SAMTools SNP 323969 323969 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C54%3BMQ%3D41%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43878 SAMTools SNP 323998 323998 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold43878 SAMTools SNP 324002 324002 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43878 SAMTools SNP 331605 331605 115 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C18%2C0%2C144%2C6%2C141:33 scaffold43878 SAMTools SNP 331653 331653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43878 SAMTools SNP 333030 333030 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C109%2C4%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 333047 333047 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C0%2C8%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.57%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43878 SAMTools SNP 333696 333696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43878 SAMTools SNP 333908 333908 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43878 SAMTools SNP 334122 334122 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.56%2C0.45%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold43878 SAMTools SNP 334146 334146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43878 SAMTools SNP 334218 334218 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43878 SAMTools SNP 337070 337070 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 337676 337676 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 337748 337748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43878 SAMTools SNP 338173 338173 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43878 SAMTools SNP 338195 338195 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold43878 SAMTools SNP 338239 338239 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.042%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C54:57 scaffold43878 SAMTools SNP 338570 338570 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43878 SAMTools SNP 340069 340069 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C207:99 scaffold43878 SAMTools SNP 340093 340093 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43878 SAMTools SNP 340293 340293 186 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold43878 SAMTools SNP 340425 340425 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43878 SAMTools SNP 341470 341470 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 341479 341479 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 341550 341550 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold43878 SAMTools SNP 342068 342068 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43878 SAMTools SNP 342700 342700 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43878 SAMTools SNP 342772 342772 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.48%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C26:29 scaffold43878 SAMTools SNP 344320 344320 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43878 SAMTools SNP 344326 344326 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.35%2C0.026%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43878 SAMTools SNP 344784 344784 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43878 SAMTools SNP 344885 344885 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43878 SAMTools SNP 345237 345237 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 345258 345258 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 346214 346214 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43878 SAMTools SNP 347167 347167 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43878 SAMTools SNP 347586 347586 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43878 SAMTools SNP 348041 348041 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold43878 SAMTools SNP 348707 348707 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43878 SAMTools SNP 349954 349954 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 349987 349987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 350345 350345 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.51%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43878 SAMTools SNP 350347 350347 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43878 SAMTools SNP 350881 350881 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43878 SAMTools SNP 350890 350890 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.082%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43878 SAMTools SNP 350899 350899 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43878 SAMTools SNP 351268 351268 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.041%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43878 SAMTools SNP 351296 351296 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43878 SAMTools SNP 351320 351320 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold43878 SAMTools SNP 351326 351326 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43878 SAMTools SNP 353019 353019 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43878 SAMTools SNP 353067 353067 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43878 SAMTools SNP 353431 353431 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold43878 SAMTools SNP 353440 353440 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43878 SAMTools SNP 353442 353442 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.0049%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold43878 SAMTools SNP 353443 353443 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.1%2C0.042%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C110:87 scaffold43878 SAMTools SNP 353780 353780 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 353825 353825 53.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold43878 SAMTools SNP 354359 354359 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43878 SAMTools SNP 355140 355140 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43878 SAMTools SNP 355189 355189 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43878 SAMTools SNP 355571 355571 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43878 SAMTools SNP 355826 355826 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43878 SAMTools SNP 355895 355895 38 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C25%2C16%2C67%2C0%2C64:16 scaffold43878 SAMTools SNP 355934 355934 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold43878 SAMTools SNP 356403 356403 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43878 SAMTools SNP 356410 356410 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43878 SAMTools SNP 356600 356600 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 356625 356625 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43878 SAMTools SNP 356913 356913 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 356940 356940 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43878 SAMTools SNP 356973 356973 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 357138 357138 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43878 SAMTools SNP 357177 357177 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43878 SAMTools SNP 357460 357460 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.3%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C254:99 scaffold43878 SAMTools SNP 357740 357740 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C6%2C33%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43878 SAMTools SNP 358444 358444 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C0%2C9%3BMQ%3D43%3BFQ%3D25%3BPV4%3D0.57%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43878 SAMTools SNP 358445 358445 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C0%2C4%3BMQ%3D40%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43878 SAMTools SNP 359302 359302 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D38%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C42%2C0:81 scaffold43878 SAMTools SNP 359401 359401 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold43878 SAMTools SNP 360097 360097 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C6%2C29%3BMQ%3D49%3BFQ%3D218%3BPV4%3D0.025%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43878 SAMTools SNP 360118 360118 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C22%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.048%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43878 SAMTools SNP 361701 361701 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43878 SAMTools SNP 363839 363839 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C5%3BMQ%3D37%3BFQ%3D10.4%3BPV4%3D0.015%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C37:40 scaffold43894 SAMTools SNP 4045 4045 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D29%3BFQ%3D9.36%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C42:38 scaffold43894 SAMTools SNP 4075 4075 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C11%3BMQ%3D45%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43894 SAMTools SNP 4269 4269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C31%2C8%3BMQ%3D45%3BFQ%3D204%3BPV4%3D1%2C0.2%2C0.5%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold43894 SAMTools SNP 5492 5492 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C30%2C54%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 5539 5539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C57%2C9%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.46%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 5581 5581 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C55%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 5605 5605 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C42%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 6201 6201 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C48%2C0:91 scaffold43894 SAMTools SNP 9812 9812 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C216:76 scaffold43894 SAMTools SNP 10819 10819 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold43894 SAMTools SNP 10826 10826 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43894 SAMTools SNP 11206 11206 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43894 SAMTools SNP 11239 11239 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43894 SAMTools SNP 11433 11433 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43894 SAMTools SNP 11471 11471 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold43894 SAMTools SNP 11724 11724 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 11894 11894 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 14970 14970 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43894 SAMTools SNP 15024 15024 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43894 SAMTools SNP 15187 15187 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 15560 15560 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43894 SAMTools SNP 15643 15643 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.22%2C0.0001%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43894 SAMTools SNP 15868 15868 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C78:43 scaffold43894 SAMTools SNP 15913 15913 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43894 SAMTools SNP 15914 15914 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43894 SAMTools SNP 15958 15958 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43894 SAMTools SNP 17702 17702 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold43894 SAMTools SNP 18762 18762 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.25%2C0.046%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43894 SAMTools SNP 18775 18775 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.059%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C231:34 scaffold43894 SAMTools SNP 18780 18780 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.029%2C1.5e-06%2C1%2C7.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C107:86 scaffold43894 SAMTools SNP 19005 19005 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43894 SAMTools SNP 19177 19177 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43894 SAMTools SNP 19202 19202 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold43894 SAMTools SNP 19472 19472 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C42%2C0:81 scaffold43894 SAMTools SNP 19766 19766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 20318 20318 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43894 SAMTools SNP 20506 20506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43894 SAMTools SNP 20510 20510 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C218:99 scaffold43894 SAMTools SNP 20716 20716 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.14%3BPV4%3D0.17%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C32:34 scaffold43894 SAMTools SNP 20741 20741 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 21990 21990 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 22139 22139 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43894 SAMTools SNP 22151 22151 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 26749 26749 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.58%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold43894 SAMTools SNP 27161 27161 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43894 SAMTools SNP 27169 27169 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold43894 SAMTools SNP 27201 27201 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43894 SAMTools SNP 41317 41317 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 41577 41577 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 41862 41862 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C180:68 scaffold43894 SAMTools SNP 42762 42762 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43894 SAMTools SNP 42877 42877 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold43894 SAMTools SNP 45535 45535 69.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold43894 SAMTools SNP 48183 48183 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43894 SAMTools SNP 50185 50185 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C45%2C0:87 scaffold43894 SAMTools SNP 50329 50329 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43894 SAMTools SNP 50335 50335 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43894 SAMTools SNP 50788 50788 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold43894 SAMTools SNP 50827 50827 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43894 SAMTools SNP 50983 50983 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43894 SAMTools SNP 51159 51159 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold43894 SAMTools SNP 51744 51744 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43894 SAMTools SNP 56850 56850 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.31%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43894 SAMTools SNP 56856 56856 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.56%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43894 SAMTools SNP 57237 57237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43894 SAMTools SNP 58401 58401 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 58447 58447 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43894 SAMTools SNP 58652 58652 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.6%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43894 SAMTools SNP 58848 58848 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.074%2C0.38%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold43894 SAMTools SNP 58857 58857 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.019%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold43894 SAMTools SNP 58906 58906 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C11%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.26%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold43894 SAMTools SNP 59570 59570 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43894 SAMTools SNP 59594 59594 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.034%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43894 SAMTools SNP 60821 60821 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.53%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43894 SAMTools SNP 60851 60851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 61265 61265 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43894 SAMTools SNP 61295 61295 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43894 SAMTools SNP 67865 67865 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.064%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold43894 SAMTools SNP 67959 67959 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C36%2C0:69 scaffold43894 SAMTools SNP 70315 70315 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold43894 SAMTools SNP 70353 70353 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 70943 70943 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43894 SAMTools SNP 71051 71051 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43894 SAMTools SNP 71063 71063 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43894 SAMTools SNP 71274 71274 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C88%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C2.8e-17%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 71358 71358 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C50%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43894 SAMTools SNP 72429 72429 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C246:99 scaffold43894 SAMTools SNP 90306 90306 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C5.7e-13%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C203:83 scaffold43894 SAMTools SNP 93452 93452 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C6.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C244:99 scaffold43894 SAMTools SNP 93481 93481 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.073%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43894 SAMTools SNP 93488 93488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43894 SAMTools SNP 94551 94551 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43894 SAMTools SNP 96204 96204 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C4%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold43894 SAMTools SNP 96215 96215 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C31%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C2.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 96274 96274 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43894 SAMTools SNP 96852 96852 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C227:41 scaffold43894 SAMTools SNP 96970 96970 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold43894 SAMTools SNP 97283 97283 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold43894 SAMTools SNP 97403 97403 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43894 SAMTools SNP 97421 97421 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43894 SAMTools SNP 97502 97502 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 97517 97517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 97888 97888 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43894 SAMTools SNP 97897 97897 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43894 SAMTools SNP 97909 97909 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold43894 SAMTools SNP 97924 97924 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C60%2C0:99 scaffold43894 SAMTools SNP 98293 98293 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 98323 98323 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 98810 98810 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C235:99 scaffold43894 SAMTools SNP 98825 98825 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.34%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C236:99 scaffold43894 SAMTools SNP 98831 98831 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold43894 SAMTools SNP 98858 98858 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C51:54 scaffold43894 SAMTools SNP 98882 98882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43894 SAMTools SNP 98888 98888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43894 SAMTools SNP 99858 99858 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 99864 99864 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C2%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.026%2C0.43%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43894 SAMTools SNP 100891 100891 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold43894 SAMTools SNP 101292 101292 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43894 SAMTools SNP 101301 101301 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0035%2C0.026%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold43894 SAMTools SNP 101304 101304 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C0.018%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold43894 SAMTools SNP 101344 101344 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C210:99 scaffold43894 SAMTools SNP 101554 101554 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 101581 101581 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43894 SAMTools SNP 101716 101716 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 102309 102309 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 102360 102360 61.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C15%2C0:27 scaffold43894 SAMTools SNP 102746 102746 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43894 SAMTools SNP 102878 102878 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.011%2C0.36%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold43894 SAMTools SNP 103129 103129 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C87%2C0:99 scaffold43894 SAMTools SNP 103508 103508 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 103542 103542 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C64:67 scaffold43894 SAMTools SNP 103565 103565 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.29%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43894 SAMTools SNP 103719 103719 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43894 SAMTools SNP 103746 103746 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43894 SAMTools SNP 104039 104039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43894 SAMTools SNP 104491 104491 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43894 SAMTools SNP 104641 104641 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C18%2C7%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.6%2C9.1e-22%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43894 SAMTools SNP 106067 106067 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C36%2C0:69 scaffold43894 SAMTools SNP 106152 106152 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.048%2C0.0017%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C156:99 scaffold43894 SAMTools SNP 106188 106188 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C0.21%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C134:99 scaffold43894 SAMTools SNP 106215 106215 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C129:99 scaffold43894 SAMTools SNP 106674 106674 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold43894 SAMTools SNP 141732 141732 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43894 SAMTools SNP 142398 142398 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43894 SAMTools SNP 143515 143515 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 144153 144153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43894 SAMTools SNP 151822 151822 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 151876 151876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43894 SAMTools SNP 151897 151897 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43894 SAMTools SNP 155119 155119 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43894 SAMTools SNP 155128 155128 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 155180 155180 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43894 SAMTools SNP 155686 155686 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold43894 SAMTools SNP 155854 155854 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D63%3BPV4%3D5e-05%2C2.6e-12%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold43894 SAMTools SNP 156576 156576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43894 SAMTools SNP 176164 176164 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 176171 176171 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 193575 193575 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.035%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold43894 SAMTools SNP 200457 200457 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.14%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold43894 SAMTools SNP 205051 205051 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C33%2C0:63 scaffold43894 SAMTools SNP 206317 206317 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.29%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43894 SAMTools SNP 206361 206361 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43894 SAMTools SNP 206370 206370 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0035%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43894 SAMTools SNP 221924 221924 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43894 SAMTools SNP 221925 221925 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43894 SAMTools SNP 222080 222080 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C206:37 scaffold43894 SAMTools SNP 222268 222268 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43894 SAMTools SNP 222280 222280 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43894 SAMTools SNP 222325 222325 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold43894 SAMTools SNP 222936 222936 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold43894 SAMTools SNP 223087 223087 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43894 SAMTools SNP 223153 223153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43894 SAMTools SNP 223410 223410 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43894 SAMTools SNP 224217 224217 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43894 SAMTools SNP 227779 227779 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C122:60 scaffold43894 SAMTools SNP 227953 227953 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C82%2C0%2C92%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1.4e-07%2C1.6e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold43894 SAMTools SNP 228013 228013 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C24%2C0:45 scaffold43894 SAMTools SNP 228139 228139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43894 SAMTools SNP 228235 228235 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C52%2C12%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00027%2C1%2C1%2C4.6e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43894 SAMTools SNP 228247 228247 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C53%2C9%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0027%2C0.0016%2C1%2C5.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43894 SAMTools SNP 228470 228470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.23%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 229705 229705 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C17%2C18%2C12%3BMQ%3D50%3BFQ%3D53%3BPV4%3D2.6e-05%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43894 SAMTools SNP 229711 229711 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C21%2C22%2C20%3BMQ%3D50%3BFQ%3D149%3BPV4%3D9.3e-08%2C0.033%2C1%2C8.5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43894 SAMTools SNP 229893 229893 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D533%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D285%2C152%2C67%2C29%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43894 SAMTools SNP 230232 230232 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C317%2C9%2C64%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.48%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43894 SAMTools SNP 230504 230504 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C49%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43894 SAMTools SNP 230512 230512 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C0%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.59%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43894 SAMTools SNP 231814 231814 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C28%2C60%2C2%3BMQ%3D47%3BFQ%3D137%3BPV4%3D0.0011%2C1%2C1.6e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold43894 SAMTools SNP 231864 231864 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C90%2C0%2C55%3BMQ%3D48%3BFQ%3D23%3BPV4%3D7.2e-15%2C0.2%2C9.9e-17%2C1.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43894 SAMTools SNP 231886 231886 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C68%2C37%2C73%3BMQ%3D47%3BFQ%3D225%3BPV4%3D3.7e-05%2C4.7e-07%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43894 SAMTools SNP 232178 232178 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C102%2C6%2C9%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.023%2C1%2C1%2C7.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold43894 SAMTools SNP 232375 232375 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C8%3BMQ%3D42%3BFQ%3D110%3BPV4%3D0.26%2C0.0023%2C0.048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C137:99 scaffold43894 SAMTools SNP 250368 250368 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold43894 SAMTools SNP 263798 263798 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43894 SAMTools SNP 264411 264411 19 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C13%2C4%2C48%2C0%2C45:15 scaffold43894 SAMTools SNP 264507 264507 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43894 SAMTools SNP 264982 264982 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold43894 SAMTools SNP 265030 265030 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D47%3BFQ%3D51%3BPV4%3D1%2C0.0088%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C183:81 scaffold43894 SAMTools SNP 275483 275483 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43894 SAMTools SNP 296569 296569 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0067%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.53%2C0.033%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C222:30 scaffold43894 SAMTools SNP 296575 296575 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.048%2C0.027%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold43894 SAMTools SNP 296578 296578 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C168:62 scaffold43894 SAMTools SNP 296992 296992 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43894 SAMTools SNP 335907 335907 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43920 SAMTools SNP 65340 65340 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43920 SAMTools SNP 66712 66712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C70%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold43920 SAMTools SNP 72718 72718 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C48%2C0:93 scaffold43920 SAMTools SNP 73039 73039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D821%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D421%2C67%2C281%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.92%2C3.9e-256%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43920 SAMTools SNP 73469 73469 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 74142 74142 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C209%2C473%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43920 SAMTools SNP 74399 74399 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1172%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C143%2C1018%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43920 SAMTools SNP 81332 81332 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D790%3BVDB%3D0.0004%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D147%2C0%2C643%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C2.3e-60;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C18:21 scaffold43920 SAMTools SNP 82589 82589 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C21%2C17%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.17%2C3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold43920 SAMTools SNP 82859 82859 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold43920 SAMTools SNP 83270 83270 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold43920 SAMTools SNP 84011 84011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43920 SAMTools SNP 84140 84140 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C39%2C0:75 scaffold43920 SAMTools SNP 84272 84272 25.1 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C59%2C41%2C63%2C0%2C51:32 scaffold43920 SAMTools SNP 84369 84369 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C23%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.14%2C3.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43920 SAMTools SNP 84423 84423 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C12%2C30%2C7%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.79%2C1.5e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold43920 SAMTools SNP 84743 84743 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D443%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43920 SAMTools SNP 84879 84879 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43920 SAMTools SNP 85128 85128 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43920 SAMTools SNP 85162 85162 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0025%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C6:9 scaffold43920 SAMTools SNP 88479 88479 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 89610 89610 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43920 SAMTools SNP 89941 89941 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold43920 SAMTools SNP 90362 90362 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43920 SAMTools SNP 90380 90380 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 90422 90422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 90429 90429 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 90434 90434 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43920 SAMTools SNP 90440 90440 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43920 SAMTools SNP 91496 91496 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43920 SAMTools SNP 92051 92051 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43920 SAMTools SNP 92499 92499 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.096%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43920 SAMTools SNP 92508 92508 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43920 SAMTools SNP 92855 92855 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 92897 92897 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold43920 SAMTools SNP 93936 93936 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold43920 SAMTools SNP 93963 93963 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43920 SAMTools SNP 94310 94310 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43920 SAMTools SNP 94674 94674 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43920 SAMTools SNP 95009 95009 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C80:56 scaffold43920 SAMTools SNP 95502 95502 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43920 SAMTools SNP 95548 95548 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 96711 96711 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43920 SAMTools SNP 97085 97085 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43920 SAMTools SNP 100944 100944 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43920 SAMTools SNP 101680 101680 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C3%2C9%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C2.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold43920 SAMTools SNP 102237 102237 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43920 SAMTools SNP 102259 102259 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.58%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C173:99 scaffold43920 SAMTools SNP 102271 102271 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C249:99 scaffold43920 SAMTools SNP 102774 102774 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43920 SAMTools SNP 102897 102897 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43920 SAMTools SNP 104125 104125 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43920 SAMTools SNP 104194 104194 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43920 SAMTools SNP 105679 105679 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43920 SAMTools SNP 106636 106636 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold43920 SAMTools SNP 106646 106646 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43920 SAMTools SNP 107077 107077 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.18%2C0.037%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C180:78 scaffold43920 SAMTools SNP 107137 107137 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold43920 SAMTools SNP 107519 107519 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold43920 SAMTools SNP 107609 107609 51.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold43920 SAMTools SNP 107616 107616 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.37%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43920 SAMTools SNP 107666 107666 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43920 SAMTools SNP 108100 108100 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0053%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C221:50 scaffold43920 SAMTools SNP 108132 108132 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C250:99 scaffold43920 SAMTools SNP 111756 111756 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43920 SAMTools SNP 112249 112249 113 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold43920 SAMTools SNP 112311 112311 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43920 SAMTools SNP 112362 112362 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold43920 SAMTools SNP 113392 113392 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 113420 113420 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43920 SAMTools SNP 114008 114008 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C18%2C0:33 scaffold43920 SAMTools SNP 114104 114104 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43920 SAMTools SNP 114513 114513 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43920 SAMTools SNP 114543 114543 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 116536 116536 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold43920 SAMTools SNP 116572 116572 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold43920 SAMTools SNP 117293 117293 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43920 SAMTools SNP 117502 117502 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold43920 SAMTools SNP 118396 118396 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C206:99 scaffold43920 SAMTools SNP 118404 118404 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.5%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43920 SAMTools SNP 118458 118458 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43920 SAMTools SNP 118837 118837 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43920 SAMTools SNP 118855 118855 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43920 SAMTools SNP 154590 154590 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43920 SAMTools SNP 155162 155162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C27%2C28%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43920 SAMTools SNP 155218 155218 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C15%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.31%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43920 SAMTools SNP 155942 155942 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43920 SAMTools SNP 157223 157223 30.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold43920 SAMTools SNP 157233 157233 50.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold43920 SAMTools SNP 161960 161960 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C205:63 scaffold43920 SAMTools SNP 164197 164197 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43920 SAMTools SNP 286607 286607 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43920 SAMTools SNP 286719 286719 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold43920 SAMTools SNP 292446 292446 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold43920 SAMTools SNP 293405 293405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43920 SAMTools SNP 293561 293561 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43920 SAMTools SNP 294186 294186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43920 SAMTools SNP 300178 300178 26.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold43920 SAMTools SNP 301633 301633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43920 SAMTools SNP 301646 301646 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C1%2C6%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.21%2C1.5e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C238:99 scaffold43920 SAMTools SNP 301658 301658 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D0%2C4%2C39%2C12%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D0.0053%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C1:4 scaffold43920 SAMTools SNP 302082 302082 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 309675 309675 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 310570 310570 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43920 SAMTools SNP 310599 310599 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43920 SAMTools SNP 310919 310919 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C9%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43920 SAMTools SNP 311102 311102 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00079%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43920 SAMTools SNP 311871 311871 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C37%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43920 SAMTools SNP 313480 313480 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43920 SAMTools SNP 313507 313507 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43920 SAMTools SNP 317983 317983 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold43920 SAMTools SNP 318018 318018 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43920 SAMTools SNP 326114 326114 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.2e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold43920 SAMTools SNP 326439 326439 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C63%2C0:99 scaffold43920 SAMTools SNP 326662 326662 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C14%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C190%2C0:99 scaffold43920 SAMTools SNP 326736 326736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43920 SAMTools SNP 329481 329481 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43920 SAMTools SNP 355670 355670 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold43920 SAMTools SNP 355945 355945 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C5%3BMQ%3D49%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C220:80 scaffold43920 SAMTools SNP 355967 355967 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C3%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold43920 SAMTools SNP 370114 370114 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43932 SAMTools SNP 36769 36769 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7.7e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43932 SAMTools SNP 36817 36817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C44%2C2%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.15%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 36821 36821 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C2%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 36833 36833 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C2%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 37656 37656 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold43932 SAMTools SNP 39259 39259 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C8%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.014%2C0.079%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43932 SAMTools SNP 40250 40250 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43932 SAMTools SNP 42755 42755 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.33%2C0.012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold43932 SAMTools SNP 43957 43957 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43932 SAMTools SNP 44029 44029 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 44490 44490 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.12%2C5.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43932 SAMTools SNP 44731 44731 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43932 SAMTools SNP 48857 48857 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 56478 56478 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.46%2C0.079%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C234:99 scaffold43932 SAMTools SNP 56507 56507 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.074%2C0.028%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43932 SAMTools SNP 59302 59302 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43932 SAMTools SNP 60434 60434 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43932 SAMTools SNP 60458 60458 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 63292 63292 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C221:99 scaffold43932 SAMTools SNP 63603 63603 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.44%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold43932 SAMTools SNP 64915 64915 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43932 SAMTools SNP 65231 65231 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43932 SAMTools SNP 65387 65387 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold43932 SAMTools SNP 65991 65991 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43932 SAMTools SNP 66078 66078 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 66090 66090 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 66814 66814 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.13%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C152:99 scaffold43932 SAMTools SNP 70196 70196 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold43932 SAMTools SNP 70224 70224 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43932 SAMTools SNP 70295 70295 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold43932 SAMTools SNP 70601 70601 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43932 SAMTools SNP 70656 70656 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.003%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43932 SAMTools SNP 70686 70686 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold43932 SAMTools SNP 70733 70733 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C137:99 scaffold43932 SAMTools SNP 71173 71173 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C219:69 scaffold43932 SAMTools SNP 71850 71850 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43932 SAMTools SNP 72082 72082 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43932 SAMTools SNP 73020 73020 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C32:35 scaffold43932 SAMTools SNP 73724 73724 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.3%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold43932 SAMTools SNP 74543 74543 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43932 SAMTools SNP 74574 74574 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43932 SAMTools SNP 74633 74633 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43932 SAMTools SNP 74649 74649 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43932 SAMTools SNP 76131 76131 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold43932 SAMTools SNP 77050 77050 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold43932 SAMTools SNP 77066 77066 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43932 SAMTools SNP 77403 77403 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C195:33 scaffold43932 SAMTools SNP 82858 82858 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 84223 84223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3949%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3415%2C294%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43932 SAMTools SNP 86249 86249 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 86251 86251 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 105855 105855 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D949%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C197%2C504%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-65%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 106600 106600 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43932 SAMTools SNP 106680 106680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D929%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C237%2C26%2C539%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 111792 111792 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C18%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 112586 112586 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold43932 SAMTools SNP 120661 120661 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C184:34 scaffold43932 SAMTools SNP 121356 121356 47.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold43932 SAMTools SNP 121367 121367 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C66%2C0:99 scaffold43932 SAMTools SNP 128624 128624 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold43932 SAMTools SNP 129080 129080 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 129485 129485 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 135818 135818 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43932 SAMTools SNP 136033 136033 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold43932 SAMTools SNP 141813 141813 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold43932 SAMTools SNP 141882 141882 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C52%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43932 SAMTools SNP 142703 142703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43932 SAMTools SNP 144645 144645 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold43932 SAMTools SNP 144670 144670 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 151940 151940 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43932 SAMTools SNP 153917 153917 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C43%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 154217 154217 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C63%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C199%2C0:99 scaffold43932 SAMTools SNP 154412 154412 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C56%2C0%2C59%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.49%2C5.6e-28%2C1%2C6.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43932 SAMTools SNP 155923 155923 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43932 SAMTools SNP 160351 160351 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43932 SAMTools SNP 160407 160407 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43932 SAMTools SNP 160409 160409 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 166246 166246 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.65%3BPV4%3D0.12%2C6.7e-12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C26:30 scaffold43932 SAMTools SNP 168123 168123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43932 SAMTools SNP 168249 168249 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C39%2C0:75 scaffold43932 SAMTools SNP 169354 169354 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C24:27 scaffold43932 SAMTools SNP 170627 170627 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.035%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C211:99 scaffold43932 SAMTools SNP 170795 170795 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 171200 171200 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 171239 171239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0082%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 171275 171275 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C12%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.3%2C0.00053%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43932 SAMTools SNP 171724 171724 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 171955 171955 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.28%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43932 SAMTools SNP 171990 171990 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 172033 172033 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0008%2C2.4e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43932 SAMTools SNP 172309 172309 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold43932 SAMTools SNP 172311 172311 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C175:74 scaffold43932 SAMTools SNP 174061 174061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C4%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43932 SAMTools SNP 174622 174622 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold43932 SAMTools SNP 175610 175610 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 175665 175665 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43932 SAMTools SNP 177739 177739 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43932 SAMTools SNP 177821 177821 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C30%2C0:57 scaffold43932 SAMTools SNP 183046 183046 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43932 SAMTools SNP 183443 183443 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 183854 183854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 184252 184252 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold43932 SAMTools SNP 184774 184774 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 186631 186631 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.002%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43932 SAMTools SNP 186640 186640 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43932 SAMTools SNP 186661 186661 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43932 SAMTools SNP 186827 186827 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold43932 SAMTools SNP 187281 187281 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43932 SAMTools SNP 187363 187363 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.13%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold43932 SAMTools SNP 187825 187825 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C18%2C21%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.36%2C1.7e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43932 SAMTools SNP 188283 188283 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43932 SAMTools SNP 188299 188299 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43932 SAMTools SNP 189607 189607 18 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold43932 SAMTools SNP 190519 190519 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C18%2C0:33 scaffold43932 SAMTools SNP 190904 190904 66.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold43932 SAMTools SNP 191029 191029 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0047%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C131:31 scaffold43932 SAMTools SNP 191411 191411 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold43932 SAMTools SNP 192116 192116 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C188:99 scaffold43932 SAMTools SNP 192568 192568 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43932 SAMTools SNP 192588 192588 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C29:32 scaffold43932 SAMTools SNP 192653 192653 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold43932 SAMTools SNP 194634 194634 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 194669 194669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43932 SAMTools SNP 195056 195056 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D0.25%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold43932 SAMTools SNP 195150 195150 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 196733 196733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43932 SAMTools SNP 197545 197545 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 198327 198327 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold43932 SAMTools SNP 198441 198441 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43932 SAMTools SNP 198495 198495 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 199286 199286 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold43932 SAMTools SNP 199310 199310 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C145:99 scaffold43932 SAMTools SNP 199888 199888 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C14%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.5e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43932 SAMTools SNP 199984 199984 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold43932 SAMTools SNP 200176 200176 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.2e-08%2C1%2C5.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43932 SAMTools SNP 207216 207216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C40%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.35%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43932 SAMTools SNP 209112 209112 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C37%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 209169 209169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C64%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold43932 SAMTools SNP 209274 209274 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C2%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43932 SAMTools SNP 209391 209391 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C14%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C79:82 scaffold43932 SAMTools SNP 209416 209416 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 215987 215987 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.00097%2C3e-09%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43932 SAMTools SNP 217396 217396 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C82%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43932 SAMTools SNP 217560 217560 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 217569 217569 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43932 SAMTools SNP 220448 220448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C31%2C23%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 228966 228966 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C18%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43932 SAMTools SNP 230577 230577 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C199:99 scaffold43932 SAMTools SNP 230601 230601 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold43932 SAMTools SNP 233012 233012 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold43932 SAMTools SNP 234350 234350 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold43932 SAMTools SNP 235384 235384 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43932 SAMTools SNP 235401 235401 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C241:99 scaffold43932 SAMTools SNP 235437 235437 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 235447 235447 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43932 SAMTools SNP 235454 235454 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43932 SAMTools SNP 236014 236014 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43932 SAMTools SNP 236469 236469 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43932 SAMTools SNP 236800 236800 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold43932 SAMTools SNP 237461 237461 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C124:80 scaffold43932 SAMTools SNP 238532 238532 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43932 SAMTools SNP 238935 238935 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 239001 239001 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold43932 SAMTools SNP 240146 240146 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 240165 240165 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43932 SAMTools SNP 241461 241461 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.048%2C0.0002%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C160:47 scaffold43932 SAMTools SNP 241480 241480 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43932 SAMTools SNP 241535 241535 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43932 SAMTools SNP 241537 241537 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold43932 SAMTools SNP 241575 241575 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold43932 SAMTools SNP 241901 241901 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43932 SAMTools SNP 242230 242230 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43932 SAMTools SNP 243628 243628 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.074%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C154:99 scaffold43932 SAMTools SNP 243721 243721 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C195:99 scaffold43932 SAMTools SNP 244146 244146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43932 SAMTools SNP 246862 246862 99.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold43932 SAMTools SNP 247305 247305 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43932 SAMTools SNP 248215 248215 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold43932 SAMTools SNP 255472 255472 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43932 SAMTools SNP 265667 265667 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold43932 SAMTools SNP 265672 265672 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43932 SAMTools SNP 268267 268267 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold43932 SAMTools SNP 275667 275667 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43932 SAMTools SNP 277493 277493 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 279574 279574 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43932 SAMTools SNP 279575 279575 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43932 SAMTools SNP 284188 284188 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.8e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold43932 SAMTools SNP 284436 284436 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold43932 SAMTools SNP 290971 290971 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 293321 293321 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.55%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold43932 SAMTools SNP 301820 301820 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43932 SAMTools SNP 302280 302280 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43932 SAMTools SNP 302328 302328 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C14%2C42%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.75%2C0.0084%2C0.035%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 302370 302370 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C15%2C49%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C4.5e-06%2C0.016%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 304636 304636 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43932 SAMTools SNP 304845 304845 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold43932 SAMTools SNP 305205 305205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C59%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43932 SAMTools SNP 305369 305369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C78%2C8%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 305402 305402 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C72%2C7%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 306181 306181 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43932 SAMTools SNP 306244 306244 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C32%2C20%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0035%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 306518 306518 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C35%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 308688 308688 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 308724 308724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C44%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.45%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 308766 308766 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43932 SAMTools SNP 308820 308820 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 311550 311550 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C104%2C3%2C32%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.14%2C0.0088%2C0.0028%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43932 SAMTools SNP 312581 312581 60.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold43932 SAMTools SNP 313913 313913 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C29%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C2.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 316079 316079 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C2%2C27%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C5.6e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43932 SAMTools SNP 316180 316180 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C5.6e-06%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C235:30 scaffold43932 SAMTools SNP 320639 320639 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C13%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.42%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold43932 SAMTools SNP 322309 322309 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43932 SAMTools SNP 323544 323544 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.4e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold43932 SAMTools SNP 324689 324689 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C78%2C0:99 scaffold43932 SAMTools SNP 329361 329361 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold43932 SAMTools SNP 332046 332046 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold43932 SAMTools SNP 332125 332125 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold43932 SAMTools SNP 332158 332158 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold43932 SAMTools SNP 332230 332230 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C24%2C0:45 scaffold43932 SAMTools SNP 332251 332251 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43932 SAMTools SNP 332830 332830 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43932 SAMTools SNP 332972 332972 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43932 SAMTools SNP 333067 333067 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43932 SAMTools SNP 333091 333091 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C214:99 scaffold43932 SAMTools SNP 333424 333424 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 333438 333438 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43932 SAMTools SNP 333469 333469 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43932 SAMTools SNP 334309 334309 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.18%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C163:95 scaffold43932 SAMTools SNP 334326 334326 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43932 SAMTools SNP 334544 334544 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43932 SAMTools SNP 334718 334718 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C241:99 scaffold43932 SAMTools SNP 335127 335127 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0124%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C21:24 scaffold43932 SAMTools SNP 335136 335136 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold43932 SAMTools SNP 341468 341468 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold43932 SAMTools SNP 344652 344652 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.00073%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold43932 SAMTools SNP 345085 345085 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C0%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.098%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43932 SAMTools SNP 348406 348406 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43932 SAMTools SNP 348508 348508 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43932 SAMTools SNP 349349 349349 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold43932 SAMTools SNP 349448 349448 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D42%3BFQ%3D11.3%3BPV4%3D0.14%2C1%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C157:40 scaffold43932 SAMTools SNP 349723 349723 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold43932 SAMTools SNP 349782 349782 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold43932 SAMTools SNP 352421 352421 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43932 SAMTools SNP 361578 361578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43932 SAMTools SNP 361973 361973 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C0.27%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold43932 SAMTools SNP 362282 362282 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D37%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C27%2C0:51 scaffold43932 SAMTools SNP 362570 362570 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C4%3BMQ%3D45%3BFQ%3D84%3BPV4%3D0.082%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43932 SAMTools SNP 362818 362818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43932 SAMTools SNP 362875 362875 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.12%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C177:99 scaffold43932 SAMTools SNP 374015 374015 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold43932 SAMTools SNP 374153 374153 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C250:99 scaffold43932 SAMTools SNP 375889 375889 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43932 SAMTools SNP 376212 376212 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 2735 2735 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.18%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43940 SAMTools SNP 3313 3313 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 3317 3317 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43940 SAMTools SNP 4642 4642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 4643 4643 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C9%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1.4e-05%2C1.4e-06%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43940 SAMTools SNP 4661 4661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43940 SAMTools SNP 4688 4688 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43940 SAMTools SNP 7804 7804 17.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold43940 SAMTools SNP 8186 8186 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 8207 8207 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold43940 SAMTools SNP 8237 8237 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C232:99 scaffold43940 SAMTools SNP 8921 8921 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.34%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43940 SAMTools SNP 9005 9005 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43940 SAMTools SNP 9011 9011 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43940 SAMTools SNP 9041 9041 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold43940 SAMTools SNP 9804 9804 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43940 SAMTools SNP 10526 10526 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 10544 10544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C5%2C9%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.35%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold43940 SAMTools SNP 10568 10568 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 10583 10583 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43940 SAMTools SNP 10867 10867 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 10933 10933 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43940 SAMTools SNP 10952 10952 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.15%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold43940 SAMTools SNP 10966 10966 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold43940 SAMTools SNP 11665 11665 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43940 SAMTools SNP 11701 11701 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43940 SAMTools SNP 11707 11707 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 11920 11920 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43940 SAMTools SNP 11974 11974 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C68:99 scaffold43940 SAMTools SNP 12911 12911 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43940 SAMTools SNP 17231 17231 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43940 SAMTools SNP 17255 17255 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C173:31 scaffold43940 SAMTools SNP 18037 18037 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C1%2C53%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43940 SAMTools SNP 19465 19465 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43940 SAMTools SNP 21593 21593 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7966%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C12%3BMQ%3D41%3BFQ%3D23%3BPV4%3D1%2C3e-07%2C0.17%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C50:53 scaffold43940 SAMTools SNP 22414 22414 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold43940 SAMTools SNP 22463 22463 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43940 SAMTools SNP 30090 30090 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold43940 SAMTools SNP 31014 31014 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43940 SAMTools SNP 31818 31818 94.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0:39 scaffold43940 SAMTools SNP 32506 32506 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43940 SAMTools SNP 33929 33929 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43940 SAMTools SNP 33944 33944 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold43940 SAMTools SNP 33951 33951 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43940 SAMTools SNP 36402 36402 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 55927 55927 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43940 SAMTools SNP 55933 55933 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43940 SAMTools SNP 67463 67463 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43940 SAMTools SNP 67608 67608 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C39%2C0:75 scaffold43940 SAMTools SNP 68116 68116 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43940 SAMTools SNP 68234 68234 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43940 SAMTools SNP 68415 68415 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold43940 SAMTools SNP 68433 68433 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43940 SAMTools SNP 68535 68535 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold43940 SAMTools SNP 68794 68794 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold43940 SAMTools SNP 69307 69307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43940 SAMTools SNP 70167 70167 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43940 SAMTools SNP 70232 70232 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43940 SAMTools SNP 70235 70235 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold43940 SAMTools SNP 70741 70741 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 70744 70744 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 70762 70762 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 70970 70970 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43940 SAMTools SNP 71543 71543 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C134:77 scaffold43940 SAMTools SNP 73118 73118 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold43940 SAMTools SNP 73323 73323 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold43940 SAMTools SNP 73353 73353 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C100:99 scaffold43940 SAMTools SNP 74917 74917 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold43940 SAMTools SNP 75061 75061 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43940 SAMTools SNP 75395 75395 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold43940 SAMTools SNP 75437 75437 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43940 SAMTools SNP 81911 81911 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C21%2C0:39 scaffold43940 SAMTools SNP 81949 81949 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.45%2C0.03%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43940 SAMTools SNP 83899 83899 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43940 SAMTools SNP 83914 83914 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43940 SAMTools SNP 84570 84570 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43940 SAMTools SNP 84819 84819 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold43940 SAMTools SNP 84829 84829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43940 SAMTools SNP 84851 84851 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C157:99 scaffold43940 SAMTools SNP 84874 84874 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43940 SAMTools SNP 87772 87772 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43940 SAMTools SNP 88177 88177 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 88256 88256 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 90338 90338 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D23%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C72%2C0:99 scaffold43940 SAMTools SNP 90997 90997 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C8%3BMQ%3D33%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43940 SAMTools SNP 91390 91390 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C84%3BMQ%3D29%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold43940 SAMTools SNP 91567 91567 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43940 SAMTools SNP 91982 91982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43940 SAMTools SNP 92105 92105 75.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold43940 SAMTools SNP 92114 92114 57.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold43940 SAMTools SNP 92135 92135 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43940 SAMTools SNP 92174 92174 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C30%2C0:57 scaffold43940 SAMTools SNP 93649 93649 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43940 SAMTools SNP 93673 93673 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C30%2C0:57 scaffold43940 SAMTools SNP 93682 93682 82 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.048%2C0.00049%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold43940 SAMTools SNP 93688 93688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C63%2C18%3BMQ%3D50%3BFQ%3D-224%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C197%2C0:99 scaffold43940 SAMTools SNP 94178 94178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C68%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43940 SAMTools SNP 94208 94208 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C50%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43940 SAMTools SNP 94238 94238 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.021%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C243:56 scaffold43940 SAMTools SNP 94510 94510 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C5%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43940 SAMTools SNP 95622 95622 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43940 SAMTools SNP 95697 95697 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C0%2C23%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.037%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold43940 SAMTools SNP 96490 96490 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43940 SAMTools SNP 96533 96533 46.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold43940 SAMTools SNP 102861 102861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 103366 103366 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C11%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.033%2C8.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43940 SAMTools SNP 104832 104832 96 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C18%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.067%2C6.7e-06%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43940 SAMTools SNP 105509 105509 98.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold43940 SAMTools SNP 107967 107967 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold43940 SAMTools SNP 108049 108049 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 108615 108615 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.24%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C237:97 scaffold43940 SAMTools SNP 108633 108633 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C239:99 scaffold43940 SAMTools SNP 109084 109084 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C40%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 109223 109223 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C66%2C0:99 scaffold43940 SAMTools SNP 118122 118122 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0057%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C9.5e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C23:26 scaffold43940 SAMTools SNP 118176 118176 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C1%2C17%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0081%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43940 SAMTools SNP 118800 118800 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C154%2C0:99 scaffold43940 SAMTools SNP 119346 119346 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C17%2C4%2C20%3BMQ%3D50%3BFQ%3D54%3BPV4%3D4e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43940 SAMTools SNP 119435 119435 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C6%2C7%2C11%3BMQ%3D50%3BFQ%3D116%3BPV4%3D3.9e-06%2C0.011%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43940 SAMTools SNP 119723 119723 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C7%2C160%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.73%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold43940 SAMTools SNP 119944 119944 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C36%2C42%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 119951 119951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C35%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 120017 120017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C48%2C38%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 120524 120524 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C54%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 120542 120542 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C20%2C3%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0012%2C0.00056%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43940 SAMTools SNP 120545 120545 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C20%2C3%2C10%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0012%2C0.00027%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold43940 SAMTools SNP 121040 121040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C45%2C51%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 121330 121330 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C86%2C48%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 121511 121511 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C55%2C27%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 121705 121705 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C31%2C81%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.0081%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 121706 121706 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C45%2C28%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 121974 121974 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold43940 SAMTools SNP 122592 122592 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C20%2C37%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 122970 122970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 123290 123290 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 124392 124392 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C7%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.2%2C1.7e-20%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold43940 SAMTools SNP 127530 127530 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C0%2C15%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.08%2C3.4e-09%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43940 SAMTools SNP 128052 128052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 128187 128187 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C6%2C39%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 130187 130187 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C27%2C14%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.79%2C6.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43940 SAMTools SNP 130253 130253 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C255%2C0:99 scaffold43940 SAMTools SNP 130808 130808 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C35%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.029%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold43940 SAMTools SNP 130832 130832 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C54%2C1%2C8%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold43940 SAMTools SNP 131601 131601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43940 SAMTools SNP 132742 132742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C24%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43940 SAMTools SNP 132749 132749 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C32%2C7%2C0%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D0.00023%2C7.9e-08%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold43940 SAMTools SNP 132775 132775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C11%2C14%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 132784 132784 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C12%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.033%2C1%2C0.024%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 132796 132796 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C12%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.071%2C0.0047%2C0.04%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 133809 133809 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold43940 SAMTools SNP 133986 133986 65.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold43940 SAMTools SNP 134076 134076 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C52%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C187%2C0:99 scaffold43940 SAMTools SNP 134817 134817 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold43940 SAMTools SNP 134904 134904 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold43940 SAMTools SNP 134964 134964 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.093%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 135002 135002 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C20%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0012%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 135487 135487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 135602 135602 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43940 SAMTools SNP 136811 136811 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold43940 SAMTools SNP 137173 137173 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C57%2C0:99 scaffold43940 SAMTools SNP 137292 137292 61.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold43940 SAMTools SNP 138099 138099 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C7.4e-07%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43940 SAMTools SNP 138238 138238 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43940 SAMTools SNP 138279 138279 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold43940 SAMTools SNP 139382 139382 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold43940 SAMTools SNP 139471 139471 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 139499 139499 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C9%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.11%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 140197 140197 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C21%2C30%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C0.39%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 140392 140392 79.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold43940 SAMTools SNP 149879 149879 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43940 SAMTools SNP 156529 156529 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C32%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 158231 158231 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold43940 SAMTools SNP 158255 158255 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold43940 SAMTools SNP 158511 158511 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C11%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C22%2C0:41 scaffold43940 SAMTools SNP 159312 159312 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C1%2C11%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.42%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold43940 SAMTools SNP 159610 159610 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C27%2C30%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0021%2C6.7e-64%2C1%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C125:79 scaffold43940 SAMTools SNP 161294 161294 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C32%3BMQ%3D3%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C114%2C0:87 scaffold43940 SAMTools SNP 162138 162138 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D3%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C111%2C0:81 scaffold43940 SAMTools SNP 162302 162302 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C5%3BMQ%3D42%3BFQ%3D62%3BPV4%3D0.38%2C6.2e-18%2C0.38%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C198:92 scaffold43940 SAMTools SNP 163139 163139 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C2%2C28%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.67%2C2.1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold43940 SAMTools SNP 163737 163737 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.028%2C1.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold43940 SAMTools SNP 174165 174165 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43940 SAMTools SNP 174238 174238 34.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold43940 SAMTools SNP 174502 174502 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43940 SAMTools SNP 177128 177128 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 177137 177137 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 181817 181817 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C22%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C253:99 scaffold43940 SAMTools SNP 184687 184687 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 184690 184690 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 185414 185414 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43940 SAMTools SNP 185634 185634 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43940 SAMTools SNP 193081 193081 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 193245 193245 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C21%2C0:39 scaffold43940 SAMTools SNP 193306 193306 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold43940 SAMTools SNP 194449 194449 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C10%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold43940 SAMTools SNP 196405 196405 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C10%2C10%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C0.0051%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43940 SAMTools SNP 196440 196440 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43940 SAMTools SNP 197565 197565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1.7e-11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 197601 197601 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1.6e-19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 197675 197675 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold43940 SAMTools SNP 197881 197881 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.044%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C74:77 scaffold43940 SAMTools SNP 198241 198241 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0025%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C32:35 scaffold43940 SAMTools SNP 198707 198707 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C187%2C0:99 scaffold43940 SAMTools SNP 198881 198881 24.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C18%2C0:32 scaffold43940 SAMTools SNP 200056 200056 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43940 SAMTools SNP 205371 205371 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C14%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.64%2C1.7e-22%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43940 SAMTools SNP 205433 205433 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C100:36 scaffold43940 SAMTools SNP 206378 206378 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C25%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C7.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43940 SAMTools SNP 206998 206998 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.055%2C0.012%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold43940 SAMTools SNP 208042 208042 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.054%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43940 SAMTools SNP 208122 208122 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43940 SAMTools SNP 208135 208135 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0192%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43940 SAMTools SNP 218399 218399 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D41%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C80:76 scaffold43940 SAMTools SNP 225251 225251 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43940 SAMTools SNP 235145 235145 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C35%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C114%2C0:99 scaffold43940 SAMTools SNP 235638 235638 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C42%2C0:81 scaffold43940 SAMTools SNP 238067 238067 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.54%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold43940 SAMTools SNP 238069 238069 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43940 SAMTools SNP 238229 238229 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C249:99 scaffold43940 SAMTools SNP 238509 238509 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C3%2C29%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.71%2C1.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43940 SAMTools SNP 238862 238862 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C205:99 scaffold43940 SAMTools SNP 238973 238973 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43940 SAMTools SNP 239517 239517 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 239619 239619 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C26%2C68%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1.7e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 240291 240291 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43940 SAMTools SNP 241556 241556 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43940 SAMTools SNP 241571 241571 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C249:99 scaffold43940 SAMTools SNP 241709 241709 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.12%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C210:99 scaffold43940 SAMTools SNP 241733 241733 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43940 SAMTools SNP 243514 243514 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.34%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 243592 243592 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43940 SAMTools SNP 243775 243775 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C248:66 scaffold43940 SAMTools SNP 244796 244796 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C32:35 scaffold43940 SAMTools SNP 245402 245402 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C121:99 scaffold43940 SAMTools SNP 247814 247814 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold43940 SAMTools SNP 248283 248283 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43940 SAMTools SNP 248385 248385 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold43940 SAMTools SNP 249099 249099 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold43940 SAMTools SNP 249113 249113 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C7%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43940 SAMTools SNP 258092 258092 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C17%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 261193 261193 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 261254 261254 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 262889 262889 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43940 SAMTools SNP 272754 272754 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43940 SAMTools SNP 280674 280674 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold43940 SAMTools SNP 305840 305840 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.018%2C0.014%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C150:67 scaffold43940 SAMTools SNP 305900 305900 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.25%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C104:99 scaffold43940 SAMTools SNP 306263 306263 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 306272 306272 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 306948 306948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 306980 306980 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C10%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.5e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43940 SAMTools SNP 320095 320095 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C4%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C105%2C0:99 scaffold43940 SAMTools SNP 321075 321075 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C46%2C2%2C63%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.0062%2C5e-15%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold43940 SAMTools SNP 321304 321304 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C69%2C4%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0062%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold43940 SAMTools SNP 321380 321380 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.31%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43940 SAMTools SNP 321875 321875 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.013%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 321896 321896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 321911 321911 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C43%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 322140 322140 187 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C2%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.27%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold43940 SAMTools SNP 322149 322149 103 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C2%2C13%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.029%2C1.1e-16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold43940 SAMTools SNP 322160 322160 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-06%2C0.3%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43940 SAMTools SNP 322798 322798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 330341 330341 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C7%2C10%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.00028%2C1.2e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43940 SAMTools SNP 346062 346062 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43940 SAMTools SNP 346339 346339 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold43940 SAMTools SNP 351861 351861 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 351876 351876 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43940 SAMTools SNP 353331 353331 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C105:33 scaffold43940 SAMTools SNP 353749 353749 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.063%2C3.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold43940 SAMTools SNP 370802 370802 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0091%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43940 SAMTools SNP 370869 370869 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold43954 SAMTools SNP 1504 1504 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold43954 SAMTools SNP 3785 3785 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43954 SAMTools SNP 3839 3839 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C42%2C0:81 scaffold43954 SAMTools SNP 7934 7934 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.036%2C5.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold43954 SAMTools SNP 10034 10034 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43954 SAMTools SNP 10042 10042 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43954 SAMTools SNP 10057 10057 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold43954 SAMTools SNP 10131 10131 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.037%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold43954 SAMTools SNP 10156 10156 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43954 SAMTools SNP 11362 11362 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43954 SAMTools SNP 11840 11840 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.017%2C0.0047%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold43954 SAMTools SNP 14570 14570 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.42%2C0.36%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold43954 SAMTools SNP 14582 14582 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43954 SAMTools SNP 14980 14980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold43954 SAMTools SNP 15364 15364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C22%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43954 SAMTools SNP 15429 15429 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 16360 16360 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.32%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold43954 SAMTools SNP 16932 16932 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C5%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.15%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold43954 SAMTools SNP 16935 16935 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C15%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43954 SAMTools SNP 16992 16992 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C7%2C41%2C13%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.086%2C2.5e-72%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43954 SAMTools SNP 17043 17043 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C32%2C0%2C17%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.00069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold43954 SAMTools SNP 18147 18147 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 18347 18347 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43954 SAMTools SNP 18422 18422 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C18%2C0:33 scaffold43954 SAMTools SNP 18648 18648 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 21410 21410 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold43954 SAMTools SNP 21434 21434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43954 SAMTools SNP 21473 21473 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43954 SAMTools SNP 22295 22295 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43954 SAMTools SNP 22397 22397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 22418 22418 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 24829 24829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43954 SAMTools SNP 24878 24878 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C148%2C0%2C144%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 25261 25261 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 35730 35730 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold43954 SAMTools SNP 36665 36665 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold43954 SAMTools SNP 36881 36881 50.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold43954 SAMTools SNP 38187 38187 17.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold43954 SAMTools SNP 59705 59705 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold43954 SAMTools SNP 60056 60056 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43954 SAMTools SNP 60093 60093 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0:57 scaffold43954 SAMTools SNP 60097 60097 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00085%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43954 SAMTools SNP 60840 60840 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 60869 60869 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43954 SAMTools SNP 62264 62264 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43954 SAMTools SNP 64157 64157 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C213:99 scaffold43954 SAMTools SNP 64954 64954 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C209:99 scaffold43954 SAMTools SNP 66069 66069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold43954 SAMTools SNP 67190 67190 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43954 SAMTools SNP 67334 67334 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43954 SAMTools SNP 74085 74085 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 74417 74417 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 74640 74640 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43954 SAMTools SNP 75220 75220 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 75650 75650 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold43954 SAMTools SNP 76434 76434 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold43954 SAMTools SNP 77686 77686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43954 SAMTools SNP 79017 79017 70 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C6%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00069%2C0.27%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold43954 SAMTools SNP 79491 79491 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 79910 79910 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.097%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43954 SAMTools SNP 79924 79924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43954 SAMTools SNP 79948 79948 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold43954 SAMTools SNP 80084 80084 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold43954 SAMTools SNP 83703 83703 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43954 SAMTools SNP 84313 84313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43954 SAMTools SNP 84734 84734 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C0.016%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 85161 85161 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.43%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43954 SAMTools SNP 85175 85175 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43954 SAMTools SNP 85182 85182 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43954 SAMTools SNP 85225 85225 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C158:99 scaffold43954 SAMTools SNP 86577 86577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C36%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold43954 SAMTools SNP 86631 86631 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43954 SAMTools SNP 87108 87108 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C31%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43954 SAMTools SNP 87406 87406 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43954 SAMTools SNP 88004 88004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43954 SAMTools SNP 88009 88009 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43954 SAMTools SNP 88442 88442 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold43954 SAMTools SNP 88448 88448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C10%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold43954 SAMTools SNP 95357 95357 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.076%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C129:56 scaffold43954 SAMTools SNP 96927 96927 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C11%2C0%2C20%3BMQ%3D50%3BFQ%3D107%3BPV4%3D3.1e-13%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43954 SAMTools SNP 97347 97347 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C1%2C34%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.59%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43954 SAMTools SNP 97362 97362 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold43954 SAMTools SNP 98097 98097 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C48%2C13%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 98130 98130 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C30%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.00033%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 100275 100275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C33%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 100296 100296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 100340 100340 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C29%2C6%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.039%2C0.036%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43954 SAMTools SNP 100413 100413 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C40%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 102067 102067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C39%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43954 SAMTools SNP 104022 104022 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43954 SAMTools SNP 111599 111599 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold43954 SAMTools SNP 111602 111602 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold43954 SAMTools SNP 123158 123158 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43954 SAMTools SNP 123280 123280 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C123%2C0:99 scaffold43954 SAMTools SNP 123523 123523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43954 SAMTools SNP 123582 123582 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43954 SAMTools SNP 123583 123583 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43954 SAMTools SNP 125571 125571 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C255%2C0:99 scaffold43954 SAMTools SNP 126180 126180 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C3.2e-11%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43954 SAMTools SNP 126198 126198 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold43954 SAMTools SNP 126395 126395 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C102%2C0:99 scaffold43954 SAMTools SNP 126407 126407 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.25%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C50:53 scaffold43954 SAMTools SNP 126501 126501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C93%2C3%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C3.7e-78%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 126520 126520 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C48%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C154%2C0:99 scaffold43954 SAMTools SNP 126756 126756 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C39%2C21%2C14%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.31%2C7.6e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43954 SAMTools SNP 126905 126905 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C30%2C43%2C38%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.74%2C4.2e-80%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold43954 SAMTools SNP 128241 128241 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 128699 128699 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00045%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold43954 SAMTools SNP 128707 128707 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.31%2C3.7e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold43954 SAMTools SNP 129344 129344 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43954 SAMTools SNP 130084 130084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 139711 139711 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.14%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43954 SAMTools SNP 140045 140045 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43954 SAMTools SNP 142063 142063 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43954 SAMTools SNP 142467 142467 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 142580 142580 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43954 SAMTools SNP 142582 142582 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43954 SAMTools SNP 142776 142776 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C10%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.63%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold43954 SAMTools SNP 142811 142811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43954 SAMTools SNP 147715 147715 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.21%2C0.21%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43954 SAMTools SNP 159342 159342 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C30%2C0:57 scaffold43954 SAMTools SNP 160092 160092 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C79%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43954 SAMTools SNP 162539 162539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C2%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 164692 164692 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold43954 SAMTools SNP 164834 164834 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold43954 SAMTools SNP 165265 165265 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 165307 165307 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold43954 SAMTools SNP 165327 165327 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0284%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D41%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C205:28 scaffold43954 SAMTools SNP 165328 165328 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0284%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D41%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.039%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C205:28 scaffold43954 SAMTools SNP 165558 165558 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold43954 SAMTools SNP 166808 166808 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43954 SAMTools SNP 166949 166949 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C56%2C1%2C35%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.39%2C1.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43954 SAMTools SNP 167222 167222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 167280 167280 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 169167 169167 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C35:38 scaffold43954 SAMTools SNP 200701 200701 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold43954 SAMTools SNP 217196 217196 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43954 SAMTools SNP 239074 239074 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C181:99 scaffold43954 SAMTools SNP 239270 239270 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43954 SAMTools SNP 240108 240108 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold43954 SAMTools SNP 264764 264764 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 266589 266589 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43954 SAMTools SNP 268436 268436 22.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold43954 SAMTools SNP 269268 269268 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.41%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C240:99 scaffold43954 SAMTools SNP 269283 269283 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C27%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.12%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold43954 SAMTools SNP 269333 269333 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 273659 273659 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43954 SAMTools SNP 277278 277278 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43954 SAMTools SNP 277314 277314 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43954 SAMTools SNP 283081 283081 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43954 SAMTools SNP 284116 284116 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold43954 SAMTools SNP 286849 286849 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold43954 SAMTools SNP 286880 286880 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43954 SAMTools SNP 286987 286987 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.24%2C1.6e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold43954 SAMTools SNP 289239 289239 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold43954 SAMTools SNP 289245 289245 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43954 SAMTools SNP 289249 289249 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.2%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C132:99 scaffold43954 SAMTools SNP 289898 289898 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43954 SAMTools SNP 294308 294308 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43954 SAMTools SNP 294314 294314 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C220:79 scaffold43954 SAMTools SNP 294407 294407 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C70:73 scaffold43954 SAMTools SNP 296044 296044 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43954 SAMTools SNP 304530 304530 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C18%2C0:33 scaffold43954 SAMTools SNP 304556 304556 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C35:38 scaffold43954 SAMTools SNP 306525 306525 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43954 SAMTools SNP 306774 306774 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43954 SAMTools SNP 308921 308921 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold43954 SAMTools SNP 308950 308950 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold43954 SAMTools SNP 311746 311746 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43954 SAMTools SNP 311747 311747 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43954 SAMTools SNP 314644 314644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C20%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.056%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold43954 SAMTools SNP 314661 314661 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold43954 SAMTools SNP 323852 323852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 325696 325696 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 337517 337517 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C40%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.034%2C0.0035%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold43954 SAMTools SNP 339160 339160 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 341909 341909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 343110 343110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold43954 SAMTools SNP 343314 343314 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 343356 343356 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43954 SAMTools SNP 344957 344957 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold43954 SAMTools SNP 358153 358153 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C19%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold43954 SAMTools SNP 361465 361465 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold43954 SAMTools SNP 361696 361696 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C30%2C0:57 scaffold43954 SAMTools SNP 361795 361795 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43954 SAMTools SNP 361804 361804 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold43954 SAMTools SNP 362150 362150 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold43954 SAMTools SNP 363753 363753 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.31%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43954 SAMTools SNP 364023 364023 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 365953 365953 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.41%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold43954 SAMTools SNP 365973 365973 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold43954 SAMTools SNP 367629 367629 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold43954 SAMTools SNP 367655 367655 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C198:99 scaffold43954 SAMTools SNP 369906 369906 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 370149 370149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43954 SAMTools SNP 371320 371320 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.058%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43954 SAMTools SNP 374068 374068 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43954 SAMTools SNP 374088 374088 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43954 SAMTools SNP 374441 374441 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43954 SAMTools SNP 377072 377072 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C13%2C10%3BMQ%3D21%3BFQ%3D29%3BPV4%3D0.77%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C56:59 scaffold43954 SAMTools SNP 390710 390710 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C13%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C2.8e-37%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43954 SAMTools SNP 390817 390817 59.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold43954 SAMTools SNP 391158 391158 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43954 SAMTools SNP 399569 399569 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43956 SAMTools SNP 9225 9225 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 9268 9268 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 9347 9347 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 9398 9398 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 19613 19613 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43956 SAMTools SNP 24082 24082 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold43956 SAMTools SNP 139020 139020 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 147178 147178 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D7.58%3BPV4%3D0.2%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C34:37 scaffold43956 SAMTools SNP 147893 147893 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43956 SAMTools SNP 176801 176801 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C24%2C0:45 scaffold43956 SAMTools SNP 179785 179785 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.02%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43956 SAMTools SNP 179812 179812 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43956 SAMTools SNP 180133 180133 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.46%2C0.032%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C184:65 scaffold43956 SAMTools SNP 180163 180163 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C127:99 scaffold43956 SAMTools SNP 180370 180370 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold43956 SAMTools SNP 180373 180373 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0069%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold43956 SAMTools SNP 180909 180909 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43956 SAMTools SNP 180932 180932 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C176:79 scaffold43956 SAMTools SNP 181485 181485 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C164:31 scaffold43956 SAMTools SNP 181620 181620 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.17%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C207:99 scaffold43956 SAMTools SNP 181991 181991 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43956 SAMTools SNP 182151 182151 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43956 SAMTools SNP 182154 182154 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold43956 SAMTools SNP 182512 182512 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0041%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.55%2C0.031%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C245:99 scaffold43956 SAMTools SNP 184734 184734 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.077%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C243:99 scaffold43956 SAMTools SNP 184735 184735 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.46%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43956 SAMTools SNP 185402 185402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43956 SAMTools SNP 190969 190969 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43956 SAMTools SNP 196671 196671 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D654%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C81%2C0:99 scaffold43956 SAMTools SNP 199411 199411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C175%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 199449 199449 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold43956 SAMTools SNP 199456 199456 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 200156 200156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43956 SAMTools SNP 200165 200165 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43956 SAMTools SNP 200220 200220 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold43956 SAMTools SNP 200499 200499 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43956 SAMTools SNP 200537 200537 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0057%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.088%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold43956 SAMTools SNP 200544 200544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43956 SAMTools SNP 200577 200577 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C8%2C51%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold43956 SAMTools SNP 202205 202205 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C50%2C42%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.22%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 202530 202530 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 202535 202535 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C58%2C6%2C11%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold43956 SAMTools SNP 203675 203675 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D982%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D407%2C157%2C266%2C132%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C5.4e-297%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 203734 203734 120 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D706%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C39%2C0%2C139%2C13%2C136:75 scaffold43956 SAMTools SNP 204161 204161 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold43956 SAMTools SNP 206541 206541 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0200%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C5.2e-06%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C23:26 scaffold43956 SAMTools SNP 208174 208174 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C34%2C0%2C15%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43956 SAMTools SNP 209340 209340 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.1%2C7.1e-05%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43956 SAMTools SNP 210262 210262 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 210313 210313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 210664 210664 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43956 SAMTools SNP 211025 211025 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43956 SAMTools SNP 211070 211070 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold43956 SAMTools SNP 211154 211154 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43956 SAMTools SNP 212542 212542 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43956 SAMTools SNP 213533 213533 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43956 SAMTools SNP 213581 213581 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold43956 SAMTools SNP 213970 213970 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 214024 214024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold43956 SAMTools SNP 214072 214072 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 214372 214372 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 214414 214414 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C69%2C0%2C34%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.55%2C5.9e-12%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold43956 SAMTools SNP 214519 214519 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43956 SAMTools SNP 214522 214522 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43956 SAMTools SNP 214767 214767 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43956 SAMTools SNP 215590 215590 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 215617 215617 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.017%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C249:99 scaffold43956 SAMTools SNP 215623 215623 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold43956 SAMTools SNP 215630 215630 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43956 SAMTools SNP 216484 216484 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C8%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D2.1e-05%2C6.5e-14%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43956 SAMTools SNP 216495 216495 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold43956 SAMTools SNP 216547 216547 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.002%2C1%2C1%2C5.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43956 SAMTools SNP 216615 216615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C76%2C4%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold43956 SAMTools SNP 217225 217225 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.43%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold43956 SAMTools SNP 217523 217523 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.053%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43956 SAMTools SNP 217533 217533 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43956 SAMTools SNP 217598 217598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold43956 SAMTools SNP 217734 217734 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold43956 SAMTools SNP 217757 217757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43956 SAMTools SNP 219331 219331 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43956 SAMTools SNP 219459 219459 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.59%2C1%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold43956 SAMTools SNP 219502 219502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C67%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.057%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 220039 220039 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C39%2C16%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 220934 220934 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 221132 221132 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43956 SAMTools SNP 222190 222190 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.012%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43956 SAMTools SNP 223364 223364 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43956 SAMTools SNP 223642 223642 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43956 SAMTools SNP 223774 223774 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold43956 SAMTools SNP 224623 224623 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 224630 224630 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43956 SAMTools SNP 224680 224680 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.27%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C49:52 scaffold43956 SAMTools SNP 225057 225057 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.35%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C23:26 scaffold43956 SAMTools SNP 225192 225192 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43956 SAMTools SNP 225496 225496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43956 SAMTools SNP 225576 225576 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold43956 SAMTools SNP 225726 225726 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43956 SAMTools SNP 225771 225771 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0047%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43956 SAMTools SNP 225786 225786 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.11%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold43956 SAMTools SNP 225834 225834 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C245:99 scaffold43956 SAMTools SNP 226300 226300 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43956 SAMTools SNP 226336 226336 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.53%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43956 SAMTools SNP 226987 226987 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43956 SAMTools SNP 227077 227077 28.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold43956 SAMTools SNP 227122 227122 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43956 SAMTools SNP 227130 227130 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.29%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43956 SAMTools SNP 227501 227501 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C12%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43956 SAMTools SNP 227835 227835 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43956 SAMTools SNP 227976 227976 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 228479 228479 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C16%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.54%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold43956 SAMTools SNP 229435 229435 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 229597 229597 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.021%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C184:99 scaffold43956 SAMTools SNP 230142 230142 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43956 SAMTools SNP 230229 230229 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold43956 SAMTools SNP 230658 230658 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43956 SAMTools SNP 230676 230676 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 230709 230709 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.022%2C0.47%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C92:95 scaffold43956 SAMTools SNP 230742 230742 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43956 SAMTools SNP 231265 231265 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.21%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold43956 SAMTools SNP 231454 231454 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold43956 SAMTools SNP 231457 231457 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold43956 SAMTools SNP 231474 231474 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold43956 SAMTools SNP 232128 232128 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C127:57 scaffold43956 SAMTools SNP 232137 232137 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C21%2C0:39 scaffold43956 SAMTools SNP 232482 232482 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold43956 SAMTools SNP 232590 232590 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 232871 232871 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 234720 234720 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C231:47 scaffold43956 SAMTools SNP 236000 236000 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43956 SAMTools SNP 236429 236429 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.42%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold43956 SAMTools SNP 236449 236449 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43956 SAMTools SNP 236824 236824 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.4%2C0.01%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C117:51 scaffold43956 SAMTools SNP 236836 236836 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.46%2C0.03%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C183:74 scaffold43956 SAMTools SNP 236868 236868 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.26%2C4.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43956 SAMTools SNP 236869 236869 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.19%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43956 SAMTools SNP 237103 237103 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.34%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold43956 SAMTools SNP 237555 237555 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold43956 SAMTools SNP 237564 237564 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold43956 SAMTools SNP 238136 238136 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43956 SAMTools SNP 239136 239136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 239273 239273 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C9.1e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43956 SAMTools SNP 240026 240026 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43956 SAMTools SNP 240060 240060 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold43956 SAMTools SNP 240673 240673 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43956 SAMTools SNP 240674 240674 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43956 SAMTools SNP 240701 240701 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold43956 SAMTools SNP 241368 241368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43956 SAMTools SNP 241692 241692 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43956 SAMTools SNP 245513 245513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43956 SAMTools SNP 248161 248161 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 248273 248273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 248393 248393 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold43956 SAMTools SNP 248421 248421 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold43956 SAMTools SNP 248685 248685 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 255577 255577 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43956 SAMTools SNP 255583 255583 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 255616 255616 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43956 SAMTools SNP 255637 255637 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C22%2C0:41 scaffold43956 SAMTools SNP 255931 255931 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C20%2C23%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.35%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C40:43 scaffold43956 SAMTools SNP 257932 257932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold43956 SAMTools SNP 257938 257938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43956 SAMTools SNP 258007 258007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 258230 258230 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C25%2C36%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 258588 258588 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C34%2C45%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 264357 264357 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 264372 264372 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 264726 264726 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43956 SAMTools SNP 264744 264744 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43956 SAMTools SNP 265168 265168 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 265946 265946 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C30%2C0:57 scaffold43956 SAMTools SNP 266102 266102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C38%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold43956 SAMTools SNP 266135 266135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C24%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold43956 SAMTools SNP 266530 266530 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C120%2C0:99 scaffold43956 SAMTools SNP 266946 266946 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C51:54 scaffold43956 SAMTools SNP 266980 266980 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold43956 SAMTools SNP 266990 266990 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43956 SAMTools SNP 267475 267475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.2%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold43956 SAMTools SNP 267789 267789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold43956 SAMTools SNP 268399 268399 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43956 SAMTools SNP 268401 268401 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43956 SAMTools SNP 268742 268742 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43956 SAMTools SNP 269070 269070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C15%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43956 SAMTools SNP 269126 269126 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C36%2C0:69 scaffold43956 SAMTools SNP 269376 269376 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D64%3BPV4%3D7.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43956 SAMTools SNP 276895 276895 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C166%2C0:99 scaffold43956 SAMTools SNP 276979 276979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 277361 277361 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C19%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43956 SAMTools SNP 277460 277460 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C102%2C0:99 scaffold43956 SAMTools SNP 277532 277532 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00018%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C200:78 scaffold43956 SAMTools SNP 278017 278017 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.27%2C0.066%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C201:81 scaffold43956 SAMTools SNP 278346 278346 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43956 SAMTools SNP 278369 278369 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43956 SAMTools SNP 278910 278910 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.042%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C190:39 scaffold43956 SAMTools SNP 280032 280032 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 280500 280500 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold43956 SAMTools SNP 280563 280563 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold43956 SAMTools SNP 280605 280605 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold43956 SAMTools SNP 282180 282180 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 282285 282285 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C173:99 scaffold43956 SAMTools SNP 282520 282520 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold43956 SAMTools SNP 282535 282535 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C7%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold43956 SAMTools SNP 282586 282586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C6%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D0.19%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold43956 SAMTools SNP 282598 282598 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 282762 282762 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 282819 282819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 282825 282825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43956 SAMTools SNP 283432 283432 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 283486 283486 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold43956 SAMTools SNP 284591 284591 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C75%2C0:99 scaffold43956 SAMTools SNP 284601 284601 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.32%2C0.01%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43956 SAMTools SNP 284968 284968 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C150:99 scaffold43956 SAMTools SNP 284999 284999 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43956 SAMTools SNP 285140 285140 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold43956 SAMTools SNP 285152 285152 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold43956 SAMTools SNP 285604 285604 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.00066%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C190:76 scaffold43956 SAMTools SNP 285653 285653 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43956 SAMTools SNP 285661 285661 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C138:98 scaffold43956 SAMTools SNP 285775 285775 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.53%2C0.0038%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43956 SAMTools SNP 286127 286127 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43956 SAMTools SNP 286194 286194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43956 SAMTools SNP 286205 286205 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.24%2C0.024%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43956 SAMTools SNP 286709 286709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C10%2C30%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.17%2C0.28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold43956 SAMTools SNP 286748 286748 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C219:91 scaffold43956 SAMTools SNP 286796 286796 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold43956 SAMTools SNP 288080 288080 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43956 SAMTools SNP 288089 288089 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43956 SAMTools SNP 288258 288258 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.11%2C0.012%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold43956 SAMTools SNP 288512 288512 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43956 SAMTools SNP 288550 288550 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43956 SAMTools SNP 288601 288601 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43956 SAMTools SNP 288921 288921 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C27:99 scaffold43956 SAMTools SNP 289135 289135 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C7%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold43956 SAMTools SNP 289213 289213 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C51%2C0:99 scaffold43956 SAMTools SNP 290457 290457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 290483 290483 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold43956 SAMTools SNP 290858 290858 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 291329 291329 127 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C90%2C0%2C145%2C60%2C142:99 scaffold43956 SAMTools SNP 293079 293079 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C204:99 scaffold43956 SAMTools SNP 293873 293873 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43956 SAMTools SNP 293936 293936 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C171:99 scaffold43956 SAMTools SNP 294483 294483 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold43956 SAMTools SNP 296360 296360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.35%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold43956 SAMTools SNP 296623 296623 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.028%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C238:99 scaffold43956 SAMTools SNP 296626 296626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43956 SAMTools SNP 296647 296647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43956 SAMTools SNP 297034 297034 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 297133 297133 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43956 SAMTools SNP 297476 297476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43956 SAMTools SNP 297572 297572 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold43956 SAMTools SNP 298118 298118 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 298126 298126 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 298274 298274 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 298292 298292 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 301969 301969 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C15%2C0:27 scaffold43956 SAMTools SNP 302046 302046 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C68%2C15%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 307485 307485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C47%3BMQ%3D49%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43956 SAMTools SNP 310685 310685 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D44%3BFQ%3D35%3BPV4%3D1%2C4.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C212:65 scaffold43956 SAMTools SNP 311747 311747 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C13%2C46%2C8%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.46%2C0.051%2C3.2e-07%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 311870 311870 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C77%2C12%2C108%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 312251 312251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C58%2C28%3BMQ%3D50%3BFQ%3D-239%3BPV4%3D1%2C0.24%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C212%2C0:99 scaffold43956 SAMTools SNP 312272 312272 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C19%2C9%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.044%2C0.16%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43956 SAMTools SNP 312284 312284 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C19%2C9%2C7%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.045%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold43956 SAMTools SNP 312462 312462 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C1%2C9%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.13%2C0.0093%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold43956 SAMTools SNP 312658 312658 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C79%2C1%2C11%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.34%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43956 SAMTools SNP 312685 312685 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C233:99 scaffold43956 SAMTools SNP 312697 312697 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold43956 SAMTools SNP 312976 312976 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold43956 SAMTools SNP 313649 313649 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C9:12 scaffold43956 SAMTools SNP 313655 313655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 313698 313698 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold43956 SAMTools SNP 313721 313721 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43956 SAMTools SNP 313927 313927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43956 SAMTools SNP 314381 314381 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43956 SAMTools SNP 314390 314390 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43956 SAMTools SNP 314471 314471 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold43956 SAMTools SNP 314480 314480 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold43956 SAMTools SNP 315053 315053 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 315173 315173 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 315197 315197 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 315752 315752 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 315761 315761 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 315827 315827 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.12%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C134:99 scaffold43956 SAMTools SNP 315888 315888 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 316845 316845 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C47%2C5%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold43956 SAMTools SNP 317259 317259 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C29%2C87%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C1%2C1%2C2.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 317292 317292 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C143%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43956 SAMTools SNP 319741 319741 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 320385 320385 11.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold43956 SAMTools SNP 321774 321774 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43956 SAMTools SNP 321792 321792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 321813 321813 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43956 SAMTools SNP 322159 322159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C2%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold43956 SAMTools SNP 322171 322171 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C5%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold43956 SAMTools SNP 323223 323223 11.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold43956 SAMTools SNP 323234 323234 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold43956 SAMTools SNP 323683 323683 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold43956 SAMTools SNP 324126 324126 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C43%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43956 SAMTools SNP 325039 325039 95.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold43956 SAMTools SNP 326209 326209 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold43956 SAMTools SNP 328040 328040 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43956 SAMTools SNP 328064 328064 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold43956 SAMTools SNP 328668 328668 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold43956 SAMTools SNP 332683 332683 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C22%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C123%2C0:99 scaffold43956 SAMTools SNP 332923 332923 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43956 SAMTools SNP 333049 333049 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43956 SAMTools SNP 333094 333094 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C25%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.053%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C211:99 scaffold43956 SAMTools SNP 333133 333133 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43956 SAMTools SNP 333751 333751 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C3%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.044%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold43956 SAMTools SNP 334349 334349 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43956 SAMTools SNP 336153 336153 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C9.8e-13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold43956 SAMTools SNP 336680 336680 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C5%2C33%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold43956 SAMTools SNP 337986 337986 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43956 SAMTools SNP 337987 337987 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43956 SAMTools SNP 338280 338280 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C60%2C0:99 scaffold43956 SAMTools SNP 338511 338511 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold43956 SAMTools SNP 338585 338585 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C33%2C0:63 scaffold43956 SAMTools SNP 343002 343002 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold43956 SAMTools SNP 343101 343101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43956 SAMTools SNP 343477 343477 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43956 SAMTools SNP 343516 343516 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43956 SAMTools SNP 347134 347134 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43956 SAMTools SNP 350995 350995 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold43956 SAMTools SNP 351841 351841 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold43956 SAMTools SNP 354902 354902 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold43956 SAMTools SNP 402993 402993 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold43956 SAMTools SNP 403011 403011 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold43964 SAMTools SNP 22947 22947 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43964 SAMTools SNP 23453 23453 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold43964 SAMTools SNP 23706 23706 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 23860 23860 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold43964 SAMTools SNP 23899 23899 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C165:99 scaffold43964 SAMTools SNP 24046 24046 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold43964 SAMTools SNP 24049 24049 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold43964 SAMTools SNP 34697 34697 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C57%2C0:99 scaffold43964 SAMTools SNP 36774 36774 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43964 SAMTools SNP 37560 37560 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43964 SAMTools SNP 38863 38863 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43964 SAMTools SNP 39274 39274 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 39280 39280 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 39343 39343 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43964 SAMTools SNP 39385 39385 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold43964 SAMTools SNP 39950 39950 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.36%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C141:96 scaffold43964 SAMTools SNP 39951 39951 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold43964 SAMTools SNP 39984 39984 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.35%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold43964 SAMTools SNP 41154 41154 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold43964 SAMTools SNP 42213 42213 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold43964 SAMTools SNP 55333 55333 25.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold43964 SAMTools SNP 60686 60686 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C69%2C0:99 scaffold43964 SAMTools SNP 71246 71246 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43964 SAMTools SNP 74857 74857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43964 SAMTools SNP 75208 75208 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.099%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold43964 SAMTools SNP 75419 75419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43964 SAMTools SNP 76421 76421 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43964 SAMTools SNP 77382 77382 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C251:66 scaffold43964 SAMTools SNP 77400 77400 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold43964 SAMTools SNP 77406 77406 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C0.0058%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold43964 SAMTools SNP 79479 79479 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 79492 79492 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold43964 SAMTools SNP 79542 79542 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43964 SAMTools SNP 79623 79623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.022%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold43964 SAMTools SNP 80336 80336 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43964 SAMTools SNP 80500 80500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43964 SAMTools SNP 80538 80538 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0024%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold43964 SAMTools SNP 80545 80545 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold43964 SAMTools SNP 80662 80662 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43964 SAMTools SNP 80797 80797 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold43964 SAMTools SNP 80815 80815 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43964 SAMTools SNP 81100 81100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43964 SAMTools SNP 81389 81389 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C5%2C59%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 81434 81434 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C8%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.38%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 81981 81981 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43964 SAMTools SNP 82409 82409 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C234:99 scaffold43964 SAMTools SNP 82617 82617 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C0%2C9%3BMQ%3D40%3BFQ%3D89%3BPV4%3D0.012%2C2.5e-07%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold43964 SAMTools SNP 82813 82813 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D42%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43964 SAMTools SNP 83797 83797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 83798 83798 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 92090 92090 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C22%2C31%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.43%2C5.9e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold43964 SAMTools SNP 92502 92502 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C11%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C148%2C0:99 scaffold43964 SAMTools SNP 92901 92901 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold43964 SAMTools SNP 93248 93248 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold43964 SAMTools SNP 93556 93556 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold43964 SAMTools SNP 95111 95111 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold43964 SAMTools SNP 98471 98471 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0057%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43964 SAMTools SNP 99109 99109 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43964 SAMTools SNP 99571 99571 47.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold43964 SAMTools SNP 99790 99790 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 99895 99895 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold43964 SAMTools SNP 99928 99928 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C89:87 scaffold43964 SAMTools SNP 100124 100124 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold43964 SAMTools SNP 105238 105238 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C151%2C0:99 scaffold43964 SAMTools SNP 106103 106103 40.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold43964 SAMTools SNP 106184 106184 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 106558 106558 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.5%2C0.044%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C243:68 scaffold43964 SAMTools SNP 108014 108014 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43964 SAMTools SNP 108017 108017 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.51%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold43964 SAMTools SNP 108188 108188 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.062%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold43964 SAMTools SNP 109686 109686 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43964 SAMTools SNP 109722 109722 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43964 SAMTools SNP 109911 109911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.037%2C0.3%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold43964 SAMTools SNP 111647 111647 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C5%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold43964 SAMTools SNP 111823 111823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C9%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.1%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 111854 111854 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C21%3BMQ%3D49%3BFQ%3D209%3BPV4%3D1%2C1%2C0.14%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C249:99 scaffold43964 SAMTools SNP 114673 114673 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43964 SAMTools SNP 114908 114908 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold43964 SAMTools SNP 127504 127504 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43964 SAMTools SNP 127540 127540 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43964 SAMTools SNP 129106 129106 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C221:33 scaffold43964 SAMTools SNP 130721 130721 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.44%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43964 SAMTools SNP 130833 130833 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold43964 SAMTools SNP 131015 131015 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold43964 SAMTools SNP 131114 131114 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold43964 SAMTools SNP 131339 131339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.0086%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 131494 131494 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C3%2C18%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C8.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43964 SAMTools SNP 138715 138715 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold43964 SAMTools SNP 138924 138924 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold43964 SAMTools SNP 138943 138943 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold43964 SAMTools SNP 139353 139353 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43964 SAMTools SNP 141475 141475 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43964 SAMTools SNP 141511 141511 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43964 SAMTools SNP 148117 148117 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold43964 SAMTools SNP 149785 149785 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold43964 SAMTools SNP 149788 149788 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.39%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold43964 SAMTools SNP 149794 149794 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C1%2C14%3BMQ%3D50%3BFQ%3D223%3BPV4%3D3.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold43964 SAMTools SNP 150828 150828 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C39%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0049%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C204:99 scaffold43964 SAMTools SNP 150897 150897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C42%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold43964 SAMTools SNP 151741 151741 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 152215 152215 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 153040 153040 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 153060 153060 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 157293 157293 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C6.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C154:48 scaffold43964 SAMTools SNP 157792 157792 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.024%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43964 SAMTools SNP 157842 157842 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.23%2C7e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43964 SAMTools SNP 158099 158099 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold43964 SAMTools SNP 161054 161054 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C30%2C0:57 scaffold43964 SAMTools SNP 161976 161976 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 162003 162003 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 162405 162405 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold43964 SAMTools SNP 162694 162694 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0024%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C75:54 scaffold43964 SAMTools SNP 163450 163450 69.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold43964 SAMTools SNP 164114 164114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 164115 164115 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 164639 164639 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43964 SAMTools SNP 164817 164817 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43964 SAMTools SNP 165198 165198 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43964 SAMTools SNP 165222 165222 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold43964 SAMTools SNP 166446 166446 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold43964 SAMTools SNP 166448 166448 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold43964 SAMTools SNP 167001 167001 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43964 SAMTools SNP 167561 167561 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold43964 SAMTools SNP 171651 171651 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43964 SAMTools SNP 174159 174159 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold43964 SAMTools SNP 174980 174980 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold43964 SAMTools SNP 175006 175006 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold43964 SAMTools SNP 180340 180340 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 181079 181079 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold43964 SAMTools SNP 181080 181080 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold43964 SAMTools SNP 181134 181134 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43964 SAMTools SNP 182074 182074 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C6.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C196:62 scaffold43964 SAMTools SNP 186660 186660 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 186670 186670 124 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C6%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold43964 SAMTools SNP 187427 187427 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.11%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold43964 SAMTools SNP 187459 187459 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.011%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold43964 SAMTools SNP 187943 187943 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43964 SAMTools SNP 188239 188239 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.34%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold43964 SAMTools SNP 188263 188263 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold43964 SAMTools SNP 188357 188357 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C111%2C0:99 scaffold43964 SAMTools SNP 188753 188753 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold43964 SAMTools SNP 189075 189075 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43964 SAMTools SNP 189434 189434 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43964 SAMTools SNP 189561 189561 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.6e-08%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C154:37 scaffold43964 SAMTools SNP 189594 189594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43964 SAMTools SNP 189843 189843 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold43964 SAMTools SNP 189897 189897 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C36%2C0:69 scaffold43964 SAMTools SNP 195189 195189 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.51%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43964 SAMTools SNP 196567 196567 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0095%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold43964 SAMTools SNP 198313 198313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43964 SAMTools SNP 201869 201869 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C5.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C172:39 scaffold43964 SAMTools SNP 201954 201954 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C6.3e-13%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C152:99 scaffold43964 SAMTools SNP 202373 202373 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 203572 203572 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 203593 203593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C16%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.29%2C0.18%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold43964 SAMTools SNP 203611 203611 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 203841 203841 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.13%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold43964 SAMTools SNP 203859 203859 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.048%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43964 SAMTools SNP 204083 204083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C19%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.12%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 204710 204710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 204954 204954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43964 SAMTools SNP 205626 205626 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 205647 205647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43964 SAMTools SNP 205698 205698 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43964 SAMTools SNP 205726 205726 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43964 SAMTools SNP 206010 206010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 206064 206064 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C9%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold43964 SAMTools SNP 207485 207485 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold43964 SAMTools SNP 207535 207535 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C175:31 scaffold43964 SAMTools SNP 207539 207539 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold43964 SAMTools SNP 207580 207580 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.7e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C107:28 scaffold43964 SAMTools SNP 207654 207654 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold43964 SAMTools SNP 210734 210734 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C230:41 scaffold43964 SAMTools SNP 210754 210754 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold43964 SAMTools SNP 210762 210762 41.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold43964 SAMTools SNP 210765 210765 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43964 SAMTools SNP 210766 210766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43964 SAMTools SNP 211080 211080 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 211921 211921 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.33%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C143:55 scaffold43964 SAMTools SNP 213479 213479 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43964 SAMTools SNP 213542 213542 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43964 SAMTools SNP 216004 216004 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold43964 SAMTools SNP 216076 216076 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C44%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C187%2C0:99 scaffold43964 SAMTools SNP 216463 216463 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 216902 216902 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 216923 216923 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 217026 217026 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 217037 217037 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold43964 SAMTools SNP 217854 217854 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0099%2C0.38%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold43964 SAMTools SNP 217920 217920 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C238:99 scaffold43964 SAMTools SNP 218147 218147 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C23%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 219049 219049 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 219124 219124 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.013%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43964 SAMTools SNP 219628 219628 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43964 SAMTools SNP 219636 219636 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C38%2C8%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D3.1e-05%2C0.4%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold43964 SAMTools SNP 220367 220367 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold43964 SAMTools SNP 220767 220767 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C69%2C2%2C9%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold43964 SAMTools SNP 220809 220809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 221286 221286 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold43964 SAMTools SNP 221468 221468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43964 SAMTools SNP 221484 221484 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold43964 SAMTools SNP 221648 221648 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C247:99 scaffold43964 SAMTools SNP 221844 221844 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43964 SAMTools SNP 221863 221863 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43964 SAMTools SNP 222056 222056 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43964 SAMTools SNP 222077 222077 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43964 SAMTools SNP 222292 222292 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 223216 223216 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 223543 223543 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 224521 224521 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43964 SAMTools SNP 224559 224559 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C1%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold43964 SAMTools SNP 224771 224771 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 224822 224822 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C64%2C3%2C20%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.56%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold43964 SAMTools SNP 224930 224930 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C18%2C78%2C13%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C2.4e-112%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold43964 SAMTools SNP 224948 224948 60.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold43964 SAMTools SNP 225014 225014 54.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold43964 SAMTools SNP 225314 225314 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C22%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C190%2C0:99 scaffold43964 SAMTools SNP 225434 225434 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C46%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold43964 SAMTools SNP 226041 226041 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold43964 SAMTools SNP 226086 226086 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C33%2C12%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0011%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43964 SAMTools SNP 226098 226098 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C26%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 226280 226280 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 226301 226301 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C41%2C23%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 226340 226340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43964 SAMTools SNP 226779 226779 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C15%2C46%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 226800 226800 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C19%2C62%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 226957 226957 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C16%2C35%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.00073%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 227076 227076 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43964 SAMTools SNP 227079 227079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43964 SAMTools SNP 228246 228246 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C89%2C0%2C44%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C244:99 scaffold43964 SAMTools SNP 231348 231348 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D16%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C60%2C0:86 scaffold43964 SAMTools SNP 232250 232250 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D13%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C96%2C0:99 scaffold43964 SAMTools SNP 234142 234142 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C7%2C1%3BMQ%3D43%3BFQ%3D100%3BPV4%3D0.39%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C221:99 scaffold43964 SAMTools SNP 240202 240202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C45%2C156%2C43%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.076%2C0.46%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 241881 241881 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C13%2C1%3BMQ%3D40%3BFQ%3D151%3BPV4%3D1%2C0.072%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C224:99 scaffold43964 SAMTools SNP 250194 250194 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.026%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 250199 250199 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C25%2C1%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.011%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold43964 SAMTools SNP 251919 251919 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43964 SAMTools SNP 251955 251955 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43964 SAMTools SNP 251979 251979 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 252363 252363 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43964 SAMTools SNP 252378 252378 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C18%2C0:33 scaffold43964 SAMTools SNP 252404 252404 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C22%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2e-46%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C249:47 scaffold43964 SAMTools SNP 252748 252748 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43964 SAMTools SNP 252819 252819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43964 SAMTools SNP 254451 254451 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43964 SAMTools SNP 254466 254466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold43964 SAMTools SNP 257419 257419 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 258263 258263 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 258486 258486 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold43964 SAMTools SNP 258500 258500 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43964 SAMTools SNP 258534 258534 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43964 SAMTools SNP 260641 260641 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C51%2C18%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D4.3e-06%2C7.2e-10%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43964 SAMTools SNP 260659 260659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C39%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold43964 SAMTools SNP 262162 262162 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.63%2C0.0016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold43964 SAMTools SNP 262810 262810 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold43964 SAMTools SNP 264816 264816 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold43964 SAMTools SNP 267186 267186 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold43964 SAMTools SNP 267759 267759 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C102:99 scaffold43964 SAMTools SNP 267789 267789 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold43964 SAMTools SNP 268353 268353 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold43964 SAMTools SNP 278057 278057 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold43964 SAMTools SNP 279438 279438 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold43964 SAMTools SNP 280158 280158 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D46%3BPV4%3D1%2C9.9e-07%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C129:76 scaffold43964 SAMTools SNP 283721 283721 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C14%2C17%2C0%3BMQ%3D48%3BFQ%3D149%3BPV4%3D0.015%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold43964 SAMTools SNP 314644 314644 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C29%2C46%2C23%3BMQ%3D41%3BFQ%3D133%3BPV4%3D0.38%2C8.6e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold43964 SAMTools SNP 314891 314891 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C87%2C0:99 scaffold43964 SAMTools SNP 317967 317967 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C18%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.13%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 318018 318018 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.6%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold43964 SAMTools SNP 318057 318057 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C25%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.087%2C3.4e-11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C236:83 scaffold43964 SAMTools SNP 319778 319778 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C89%2C10%2C69%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C0.33%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 326530 326530 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C94%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 326976 326976 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 327281 327281 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43964 SAMTools SNP 328151 328151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C8%3BMQ%3D45%3BFQ%3D112%3BPV4%3D0.12%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold43964 SAMTools SNP 328554 328554 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 331638 331638 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D16%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C57%2C0:99 scaffold43964 SAMTools SNP 332867 332867 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C21%2C0:39 scaffold43964 SAMTools SNP 333126 333126 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C27%2C0:51 scaffold43964 SAMTools SNP 333177 333177 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C253:99 scaffold43964 SAMTools SNP 335698 335698 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C38%3BMQ%3D49%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold43964 SAMTools SNP 338632 338632 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43964 SAMTools SNP 341809 341809 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C27%3BMQ%3D41%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 342851 342851 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0045%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C198:96 scaffold43964 SAMTools SNP 342884 342884 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C70%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 343483 343483 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C2%2C65%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.2e-133%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold43964 SAMTools SNP 344430 344430 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold43964 SAMTools SNP 346153 346153 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold43964 SAMTools SNP 346416 346416 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C36%2C0:69 scaffold43964 SAMTools SNP 346566 346566 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C72%2C0:99 scaffold43964 SAMTools SNP 346674 346674 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C9%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.091%2C3e-25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43964 SAMTools SNP 347843 347843 23.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold43964 SAMTools SNP 350269 350269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C43%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold43964 SAMTools SNP 350859 350859 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C3%2C22%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.007%2C0.00015%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold43964 SAMTools SNP 351565 351565 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C33%2C0:63 scaffold43964 SAMTools SNP 354309 354309 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold43964 SAMTools SNP 356306 356306 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 356347 356347 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C7%2C109%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 358469 358469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43964 SAMTools SNP 359646 359646 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 359686 359686 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C57%2C7%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 360837 360837 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C70%2C0%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 360870 360870 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold43964 SAMTools SNP 360878 360878 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold43964 SAMTools SNP 363397 363397 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.27%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43964 SAMTools SNP 363406 363406 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.17%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C235:99 scaffold43964 SAMTools SNP 366581 366581 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D156%3BPV4%3D5.3e-07%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold43964 SAMTools SNP 366644 366644 96.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C5%2C0:9 scaffold43964 SAMTools SNP 367276 367276 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C41%2C12%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.43%2C1.7e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold43964 SAMTools SNP 367786 367786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 374353 374353 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C200%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 378248 378248 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.38%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43964 SAMTools SNP 380082 380082 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43964 SAMTools SNP 380226 380226 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold43964 SAMTools SNP 380261 380261 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold43964 SAMTools SNP 380505 380505 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold43964 SAMTools SNP 381514 381514 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 381535 381535 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C18%2C0:33 scaffold43964 SAMTools SNP 381676 381676 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold43964 SAMTools SNP 381727 381727 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43964 SAMTools SNP 382288 382288 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold43964 SAMTools SNP 382380 382380 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0001%2C4.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C209:96 scaffold43964 SAMTools SNP 382468 382468 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold43964 SAMTools SNP 382581 382581 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold43964 SAMTools SNP 382584 382584 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C72%2C0:99 scaffold43964 SAMTools SNP 382596 382596 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C77%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.00015%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold43964 SAMTools SNP 382635 382635 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C402%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43964 SAMTools SNP 383443 383443 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 384057 384057 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 384346 384346 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 384861 384861 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold43964 SAMTools SNP 384908 384908 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 387822 387822 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold43964 SAMTools SNP 391209 391209 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 391543 391543 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C36%2C0:69 scaffold43964 SAMTools SNP 391644 391644 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D70.5%3BPV4%3D0.25%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C107:99 scaffold43964 SAMTools SNP 391680 391680 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold43964 SAMTools SNP 392996 392996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43964 SAMTools SNP 393081 393081 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 393278 393278 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43964 SAMTools SNP 396616 396616 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43964 SAMTools SNP 396623 396623 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43964 SAMTools SNP 396625 396625 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43964 SAMTools SNP 398823 398823 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43964 SAMTools SNP 398852 398852 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43964 SAMTools SNP 399159 399159 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 4521 4521 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 5341 5341 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C51%2C0:99 scaffold43986 SAMTools SNP 6385 6385 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C55%3BMQ%3D50%3BFQ%3D-239%3BPV4%3D0.37%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C212%2C0:99 scaffold43986 SAMTools SNP 6762 6762 53.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C11:14 scaffold43986 SAMTools SNP 6848 6848 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold43986 SAMTools SNP 9124 9124 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold43986 SAMTools SNP 11489 11489 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C229%2C0:99 scaffold43986 SAMTools SNP 11678 11678 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43986 SAMTools SNP 11685 11685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold43986 SAMTools SNP 16142 16142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C180%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43986 SAMTools SNP 16172 16172 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C23%2C2%2C157%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-24%2C1%2C1%2C1.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 16199 16199 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C0.002%2C1%2C8.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 21614 21614 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.18%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 21705 21705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43986 SAMTools SNP 21741 21741 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 22056 22056 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C156:99 scaffold43986 SAMTools SNP 22086 22086 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold43986 SAMTools SNP 22107 22107 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 22214 22214 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 22224 22224 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 22609 22609 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43986 SAMTools SNP 22636 22636 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold43986 SAMTools SNP 22642 22642 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold43986 SAMTools SNP 22645 22645 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.28%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold43986 SAMTools SNP 23181 23181 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43986 SAMTools SNP 24748 24748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43986 SAMTools SNP 29208 29208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43986 SAMTools SNP 29220 29220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43986 SAMTools SNP 29262 29262 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43986 SAMTools SNP 29289 29289 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold43986 SAMTools SNP 38086 38086 14.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43986 SAMTools SNP 38197 38197 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 45330 45330 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold43986 SAMTools SNP 46154 46154 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 60122 60122 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43986 SAMTools SNP 60125 60125 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43986 SAMTools SNP 61701 61701 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C193:99 scaffold43986 SAMTools SNP 61704 61704 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C193:99 scaffold43986 SAMTools SNP 61782 61782 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.083%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 65080 65080 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 71926 71926 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold43986 SAMTools SNP 73715 73715 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43986 SAMTools SNP 74174 74174 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 74234 74234 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43986 SAMTools SNP 74460 74460 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43986 SAMTools SNP 74466 74466 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43986 SAMTools SNP 74526 74526 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43986 SAMTools SNP 74688 74688 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold43986 SAMTools SNP 74767 74767 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C145:41 scaffold43986 SAMTools SNP 75014 75014 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 75044 75044 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 75122 75122 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.022%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold43986 SAMTools SNP 75290 75290 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold43986 SAMTools SNP 75361 75361 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold43986 SAMTools SNP 75703 75703 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 76044 76044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 76099 76099 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 76279 76279 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.41%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold43986 SAMTools SNP 76294 76294 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold43986 SAMTools SNP 76959 76959 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.43%2C0.021%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C192:51 scaffold43986 SAMTools SNP 77727 77727 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C60%2C0:99 scaffold43986 SAMTools SNP 78129 78129 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1.2e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold43986 SAMTools SNP 78154 78154 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.0061%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold43986 SAMTools SNP 78343 78343 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold43986 SAMTools SNP 78417 78417 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43986 SAMTools SNP 79113 79113 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43986 SAMTools SNP 79159 79159 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.038%2C4.5e-11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43986 SAMTools SNP 79166 79166 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold43986 SAMTools SNP 95324 95324 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.33%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold43986 SAMTools SNP 96085 96085 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 97882 97882 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold43986 SAMTools SNP 101669 101669 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 101675 101675 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 102117 102117 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43986 SAMTools SNP 103766 103766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 103880 103880 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold43986 SAMTools SNP 103895 103895 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43986 SAMTools SNP 104207 104207 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43986 SAMTools SNP 104222 104222 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43986 SAMTools SNP 104252 104252 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 104530 104530 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43986 SAMTools SNP 105728 105728 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C0.06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold43986 SAMTools SNP 105755 105755 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.38%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C26:29 scaffold43986 SAMTools SNP 105998 105998 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold43986 SAMTools SNP 106556 106556 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 107853 107853 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43986 SAMTools SNP 108139 108139 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43986 SAMTools SNP 108188 108188 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold43986 SAMTools SNP 108492 108492 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold43986 SAMTools SNP 108896 108896 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold43986 SAMTools SNP 109108 109108 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43986 SAMTools SNP 109809 109809 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 109856 109856 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.18%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold43986 SAMTools SNP 110026 110026 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold43986 SAMTools SNP 110095 110095 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold43986 SAMTools SNP 110285 110285 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.15%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C109:99 scaffold43986 SAMTools SNP 110327 110327 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold43986 SAMTools SNP 110753 110753 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C57:60 scaffold43986 SAMTools SNP 126966 126966 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold43986 SAMTools SNP 130031 130031 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold43986 SAMTools SNP 130771 130771 89.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C5%2C0:9 scaffold43986 SAMTools SNP 131125 131125 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold43986 SAMTools SNP 131150 131150 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 131225 131225 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43986 SAMTools SNP 131227 131227 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43986 SAMTools SNP 135617 135617 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 137324 137324 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43986 SAMTools SNP 137362 137362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43986 SAMTools SNP 137885 137885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold43986 SAMTools SNP 138020 138020 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold43986 SAMTools SNP 138075 138075 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C26%2C30%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.0012%2C8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold43986 SAMTools SNP 138284 138284 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.25%2C0.31%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C106:99 scaffold43986 SAMTools SNP 138290 138290 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.16%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold43986 SAMTools SNP 138561 138561 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C26%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D0.35%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold43986 SAMTools SNP 138607 138607 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C12%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0052%2C7.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold43986 SAMTools SNP 138619 138619 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.031%2C0.24%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold43986 SAMTools SNP 138670 138670 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.00089%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 138679 138679 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 138972 138972 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 139140 139140 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 139149 139149 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 139695 139695 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold43986 SAMTools SNP 139722 139722 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold43986 SAMTools SNP 140034 140034 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43986 SAMTools SNP 140612 140612 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold43986 SAMTools SNP 140642 140642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43986 SAMTools SNP 141211 141211 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold43986 SAMTools SNP 141313 141313 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0092%2C0.11%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold43986 SAMTools SNP 141319 141319 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C1%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.02%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold43986 SAMTools SNP 141665 141665 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C5%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.38%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold43986 SAMTools SNP 141734 141734 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C50%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D1%2C6.3e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold43986 SAMTools SNP 142484 142484 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43986 SAMTools SNP 142502 142502 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold43986 SAMTools SNP 142948 142948 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43986 SAMTools SNP 143041 143041 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold43986 SAMTools SNP 143083 143083 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold43986 SAMTools SNP 143224 143224 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.43%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43986 SAMTools SNP 143578 143578 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C6%2C0%3BMQ%3D49%3BFQ%3D47%3BPV4%3D0.31%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold43986 SAMTools SNP 143647 143647 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D27%3BPV4%3D1%2C0.013%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C134:57 scaffold43986 SAMTools SNP 143698 143698 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold43986 SAMTools SNP 143737 143737 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C4%2C5%3BMQ%3D35%3BFQ%3D52%3BPV4%3D0.7%2C0.26%2C0.15%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold43986 SAMTools SNP 143776 143776 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D37%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43986 SAMTools SNP 145173 145173 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 145308 145308 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43986 SAMTools SNP 145342 145342 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C11%2C30%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00027%2C0.2%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold43986 SAMTools SNP 145390 145390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold43986 SAMTools SNP 145465 145465 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 145471 145471 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold43986 SAMTools SNP 146869 146869 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold43986 SAMTools SNP 147004 147004 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C76%2C0%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D2.9e-09%2C0.28%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold43986 SAMTools SNP 149342 149342 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C98%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.4e-20%2C0.44%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C255%2C0:99 scaffold43986 SAMTools SNP 158410 158410 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold43986 SAMTools SNP 158443 158443 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold43986 SAMTools SNP 163964 163964 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold43986 SAMTools SNP 164374 164374 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold43986 SAMTools SNP 166568 166568 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold43986 SAMTools SNP 166630 166630 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold43986 SAMTools SNP 167839 167839 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43986 SAMTools SNP 168992 168992 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold43986 SAMTools SNP 169004 169004 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.25%2C0.011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43986 SAMTools SNP 170218 170218 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43986 SAMTools SNP 170263 170263 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43986 SAMTools SNP 171504 171504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold43986 SAMTools SNP 171725 171725 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C11%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold43986 SAMTools SNP 172332 172332 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C16%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C0.022%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 172458 172458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43986 SAMTools SNP 173995 173995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold43986 SAMTools SNP 174519 174519 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.28%2C0.48%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold43986 SAMTools SNP 174621 174621 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold43986 SAMTools SNP 175070 175070 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 175077 175077 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 175772 175772 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43986 SAMTools SNP 175802 175802 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C50%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 176174 176174 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C47%2C5%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 176183 176183 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C10%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 176218 176218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 176339 176339 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C7%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold43986 SAMTools SNP 176468 176468 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C2%2C12%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.00019%2C1.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold43986 SAMTools SNP 176609 176609 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C57%2C0:99 scaffold43986 SAMTools SNP 197362 197362 48.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold43986 SAMTools SNP 198769 198769 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43986 SAMTools SNP 201162 201162 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C33%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C120%2C0:99 scaffold43986 SAMTools SNP 201400 201400 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C39%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C184%2C0:99 scaffold43986 SAMTools SNP 201464 201464 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C8%2C22%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.016%2C6.7e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold43986 SAMTools SNP 201475 201475 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C11%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C144%2C0:99 scaffold43986 SAMTools SNP 210576 210576 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43986 SAMTools SNP 215229 215229 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43986 SAMTools SNP 223404 223404 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C2%2C20%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.12%2C1.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C251:72 scaffold43986 SAMTools SNP 223461 223461 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.29%2C0.052%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43986 SAMTools SNP 238442 238442 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.11%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C219:99 scaffold43986 SAMTools SNP 238809 238809 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.028%2C6.9e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C247:99 scaffold43986 SAMTools SNP 239451 239451 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43986 SAMTools SNP 239693 239693 63.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold43986 SAMTools SNP 240142 240142 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43986 SAMTools SNP 240828 240828 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 241311 241311 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 241327 241327 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold43986 SAMTools SNP 241543 241543 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43986 SAMTools SNP 241549 241549 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold43986 SAMTools SNP 242112 242112 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C176:99 scaffold43986 SAMTools SNP 242121 242121 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold43986 SAMTools SNP 242770 242770 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C18%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.49%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold43986 SAMTools SNP 247407 247407 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C52%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 251967 251967 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C124:92 scaffold43986 SAMTools SNP 251973 251973 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 252088 252088 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C251:99 scaffold43986 SAMTools SNP 252616 252616 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold43986 SAMTools SNP 252625 252625 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43986 SAMTools SNP 252754 252754 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.4%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold43986 SAMTools SNP 252758 252758 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold43986 SAMTools SNP 253244 253244 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C156:64 scaffold43986 SAMTools SNP 253280 253280 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C0.27%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold43986 SAMTools SNP 253629 253629 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43986 SAMTools SNP 253656 253656 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold43986 SAMTools SNP 255379 255379 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold43986 SAMTools SNP 256122 256122 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43986 SAMTools SNP 256608 256608 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43986 SAMTools SNP 256678 256678 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold43986 SAMTools SNP 257021 257021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold43986 SAMTools SNP 257372 257372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C15%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.63%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold43986 SAMTools SNP 258525 258525 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C0.00033%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold43986 SAMTools SNP 260114 260114 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C48%2C0:93 scaffold43986 SAMTools SNP 261024 261024 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C66%2C0:99 scaffold43986 SAMTools SNP 261437 261437 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C0%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0002%2C6.7e-10%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold43986 SAMTools SNP 262686 262686 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 268054 268054 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold43986 SAMTools SNP 268063 268063 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C214:99 scaffold43986 SAMTools SNP 268559 268559 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C142%2C8%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43986 SAMTools SNP 268604 268604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C168%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43986 SAMTools SNP 268736 268736 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43986 SAMTools SNP 268932 268932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold43986 SAMTools SNP 269755 269755 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold43986 SAMTools SNP 269798 269798 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 270211 270211 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold43986 SAMTools SNP 270355 270355 44.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold43986 SAMTools SNP 272194 272194 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold43986 SAMTools SNP 272623 272623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 273561 273561 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold43986 SAMTools SNP 278934 278934 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 292063 292063 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold43986 SAMTools SNP 292091 292091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 300890 300890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold43986 SAMTools SNP 300927 300927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43986 SAMTools SNP 320454 320454 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 322996 322996 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43986 SAMTools SNP 323180 323180 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43986 SAMTools SNP 329995 329995 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43986 SAMTools SNP 346500 346500 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 357374 357374 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold43986 SAMTools SNP 375236 375236 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 375248 375248 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold43986 SAMTools SNP 393090 393090 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold43988 SAMTools SNP 2468 2468 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 4378 4378 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43988 SAMTools SNP 14446 14446 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold43988 SAMTools SNP 53685 53685 6.97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C32%3BMQ%3D2%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C160%2C0:51 scaffold43988 SAMTools SNP 57203 57203 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C49%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 58663 58663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold43988 SAMTools SNP 58671 58671 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43988 SAMTools SNP 64617 64617 72 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D8012%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C42%2C0%2C90%2C6%2C84:81 scaffold43988 SAMTools SNP 66183 66183 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C15%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C212:50 scaffold43988 SAMTools SNP 66701 66701 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold43988 SAMTools SNP 68073 68073 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold43988 SAMTools SNP 71817 71817 54.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold43988 SAMTools SNP 74200 74200 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43988 SAMTools SNP 74205 74205 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold43988 SAMTools SNP 74418 74418 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold43988 SAMTools SNP 74504 74504 70.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold43988 SAMTools SNP 74511 74511 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold43988 SAMTools SNP 75299 75299 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold43988 SAMTools SNP 79719 79719 14.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold43988 SAMTools SNP 81356 81356 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.27%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold43988 SAMTools SNP 81414 81414 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 85628 85628 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C55%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold43988 SAMTools SNP 86980 86980 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.46%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold43988 SAMTools SNP 87031 87031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C12%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold43988 SAMTools SNP 87328 87328 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C0%2C23%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.014%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold43988 SAMTools SNP 90657 90657 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold43988 SAMTools SNP 91483 91483 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold43988 SAMTools SNP 91510 91510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold43988 SAMTools SNP 92090 92090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43988 SAMTools SNP 92094 92094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold43988 SAMTools SNP 95750 95750 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 95763 95763 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43988 SAMTools SNP 99546 99546 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43988 SAMTools SNP 99797 99797 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 100558 100558 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 100783 100783 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold43988 SAMTools SNP 100868 100868 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold43988 SAMTools SNP 117402 117402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 117685 117685 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold43988 SAMTools SNP 117923 117923 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 118986 118986 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C24%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold43988 SAMTools SNP 119002 119002 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 119726 119726 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold43988 SAMTools SNP 119933 119933 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 176190 176190 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C33%2C0:63 scaffold43988 SAMTools SNP 237349 237349 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold43988 SAMTools SNP 294392 294392 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43988 SAMTools SNP 294470 294470 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold43988 SAMTools SNP 309298 309298 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C3%3BMQ%3D49%3BFQ%3D110%3BPV4%3D1%2C1%2C0.3%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold43988 SAMTools SNP 309308 309308 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C6%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.076%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 312308 312308 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold43988 SAMTools SNP 315281 315281 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.24%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold43988 SAMTools SNP 315563 315563 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold43988 SAMTools SNP 315596 315596 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold43988 SAMTools SNP 317996 317996 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 320130 320130 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C29%2C7%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.46%2C6.9e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold43988 SAMTools SNP 321327 321327 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 321891 321891 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C36%2C0:69 scaffold43988 SAMTools SNP 323584 323584 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold43988 SAMTools SNP 324505 324505 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold43988 SAMTools SNP 327860 327860 63.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold43988 SAMTools SNP 328703 328703 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold43988 SAMTools SNP 330549 330549 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.00012%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold43988 SAMTools SNP 330606 330606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold43988 SAMTools SNP 331402 331402 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold43988 SAMTools SNP 332661 332661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C10%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold43988 SAMTools SNP 337098 337098 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 344794 344794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43988 SAMTools SNP 345352 345352 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold43988 SAMTools SNP 345358 345358 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43988 SAMTools SNP 347332 347332 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold43988 SAMTools SNP 348098 348098 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold43988 SAMTools SNP 348146 348146 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 349525 349525 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43988 SAMTools SNP 351613 351613 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43988 SAMTools SNP 356839 356839 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.64%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold43988 SAMTools SNP 357472 357472 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 357892 357892 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C3%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.055%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold43988 SAMTools SNP 358082 358082 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.15%2C0.0035%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold43988 SAMTools SNP 358154 358154 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 358211 358211 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C32%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C0.1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 358787 358787 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C24%2C0:45 scaffold43988 SAMTools SNP 358834 358834 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 361568 361568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 361751 361751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C69%2C41%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C0.47%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 361945 361945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C59%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 362547 362547 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C36%2C10%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold43988 SAMTools SNP 362595 362595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 363003 363003 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C20%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C0.49%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 364275 364275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C27%2C13%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 367527 367527 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.026%2C1.3e-06%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold43988 SAMTools SNP 367740 367740 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.4e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C66:44 scaffold43988 SAMTools SNP 368413 368413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C33%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold43988 SAMTools SNP 373913 373913 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold43988 SAMTools SNP 374081 374081 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold43988 SAMTools SNP 374131 374131 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00058%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold43988 SAMTools SNP 374143 374143 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43988 SAMTools SNP 375389 375389 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43988 SAMTools SNP 375434 375434 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold43988 SAMTools SNP 375933 375933 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold43988 SAMTools SNP 375976 375976 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold43988 SAMTools SNP 376131 376131 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold43988 SAMTools SNP 376857 376857 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C199:28 scaffold43988 SAMTools SNP 376957 376957 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold43988 SAMTools SNP 377967 377967 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold43988 SAMTools SNP 378149 378149 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold43988 SAMTools SNP 378197 378197 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 378204 378204 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 387707 387707 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold43988 SAMTools SNP 387730 387730 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold43988 SAMTools SNP 388618 388618 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 389012 389012 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold43988 SAMTools SNP 389030 389030 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.12%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold43988 SAMTools SNP 389802 389802 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold43988 SAMTools SNP 389822 389822 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43988 SAMTools SNP 390058 390058 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43988 SAMTools SNP 390173 390173 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold43988 SAMTools SNP 390334 390334 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 390501 390501 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 390639 390639 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C24%2C0:45 scaffold43988 SAMTools SNP 390910 390910 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C226:99 scaffold43988 SAMTools SNP 391206 391206 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C30:33 scaffold43988 SAMTools SNP 391434 391434 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C12%2C7%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.078%2C0.21%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold43988 SAMTools SNP 391449 391449 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.32%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold43988 SAMTools SNP 392615 392615 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0099%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold43988 SAMTools SNP 392757 392757 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold43988 SAMTools SNP 392805 392805 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold43988 SAMTools SNP 397069 397069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C32%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold43988 SAMTools SNP 397749 397749 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C21%2C13%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.032%2C0.29%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold43988 SAMTools SNP 397783 397783 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C6%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold43988 SAMTools SNP 397915 397915 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 398251 398251 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43988 SAMTools SNP 398329 398329 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold43988 SAMTools SNP 398370 398370 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C10%2C16%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.35%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold43988 SAMTools SNP 398738 398738 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C3%2C46%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-14%2C0.3%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 399011 399011 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold43988 SAMTools SNP 399042 399042 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.031%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold43988 SAMTools SNP 399048 399048 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold43988 SAMTools SNP 399986 399986 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C56%2C0%2C9%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold43988 SAMTools SNP 399987 399987 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold43988 SAMTools SNP 402505 402505 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C40%2C47:10 scaffold43988 SAMTools SNP 402514 402514 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold43988 SAMTools SNP 403290 403290 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 403507 403507 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold43988 SAMTools SNP 405389 405389 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold43988 SAMTools SNP 405441 405441 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold43988 SAMTools SNP 405849 405849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold43988 SAMTools SNP 405893 405893 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold43988 SAMTools SNP 406552 406552 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43988 SAMTools SNP 406555 406555 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold43988 SAMTools SNP 406600 406600 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold43988 SAMTools SNP 406603 406603 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 406657 406657 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43988 SAMTools SNP 406914 406914 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold43988 SAMTools SNP 407907 407907 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold43988 SAMTools SNP 407918 407918 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.27%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold43988 SAMTools SNP 408584 408584 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold43988 SAMTools SNP 408600 408600 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43988 SAMTools SNP 408603 408603 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold43988 SAMTools SNP 409262 409262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold43988 SAMTools SNP 409818 409818 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.46%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C225:99 scaffold43988 SAMTools SNP 409836 409836 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold43988 SAMTools SNP 410484 410484 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold43988 SAMTools SNP 412152 412152 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.056%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold43988 SAMTools SNP 412682 412682 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C40%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold43988 SAMTools SNP 413599 413599 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold43988 SAMTools SNP 413620 413620 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold43988 SAMTools SNP 413626 413626 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold43988 SAMTools SNP 413668 413668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold43988 SAMTools SNP 414271 414271 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold43988 SAMTools SNP 414298 414298 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.55%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold43988 SAMTools SNP 415526 415526 19.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold44 SAMTools SNP 347 347 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 426 426 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C33%2C0:63 scaffold44 SAMTools SNP 1252 1252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C108%2C89%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 7725 7725 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.37%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold44 SAMTools SNP 8750 8750 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold44 SAMTools SNP 12884 12884 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44 SAMTools SNP 13497 13497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44 SAMTools SNP 13551 13551 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 13614 13614 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C244:99 scaffold44 SAMTools SNP 13736 13736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.61%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold44 SAMTools SNP 13742 13742 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold44 SAMTools SNP 13850 13850 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold44 SAMTools SNP 13852 13852 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold44 SAMTools SNP 14529 14529 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44 SAMTools SNP 14547 14547 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44 SAMTools SNP 14792 14792 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44 SAMTools SNP 14802 14802 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44 SAMTools SNP 14819 14819 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 14903 14903 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44 SAMTools SNP 15384 15384 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.031%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold44 SAMTools SNP 15412 15412 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.01%2C1%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold44 SAMTools SNP 15874 15874 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C58%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 16492 16492 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C11%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 16558 16558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 18157 18157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.0024%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 18445 18445 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold44 SAMTools SNP 18726 18726 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold44 SAMTools SNP 19137 19137 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold44 SAMTools SNP 19352 19352 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold44 SAMTools SNP 19741 19741 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold44 SAMTools SNP 20278 20278 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 20296 20296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44 SAMTools SNP 20320 20320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C48%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold44 SAMTools SNP 20329 20329 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C13%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.0094%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold44 SAMTools SNP 21546 21546 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C38%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold44 SAMTools SNP 21548 21548 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C0%2C9%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold44 SAMTools SNP 22105 22105 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44 SAMTools SNP 26259 26259 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold44 SAMTools SNP 26322 26322 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44 SAMTools SNP 26367 26367 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold44 SAMTools SNP 29354 29354 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C27%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold44 SAMTools SNP 29381 29381 115 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.009%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold44 SAMTools SNP 37965 37965 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 46276 46276 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold44 SAMTools SNP 46281 46281 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold44 SAMTools SNP 47201 47201 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold44 SAMTools SNP 57857 57857 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C13%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.47%2C9.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold44 SAMTools SNP 58070 58070 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.2e-30%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold44 SAMTools SNP 58262 58262 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold44 SAMTools SNP 58826 58826 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold44 SAMTools SNP 58883 58883 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.48%2C6.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold44 SAMTools SNP 58961 58961 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.55%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C231:99 scaffold44 SAMTools SNP 58970 58970 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.43%2C3.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold44 SAMTools SNP 58980 58980 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C239:44 scaffold44 SAMTools SNP 59033 59033 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C63%2C0:99 scaffold44 SAMTools SNP 59123 59123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44 SAMTools SNP 59219 59219 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C45%2C0:87 scaffold44 SAMTools SNP 59348 59348 46.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold44 SAMTools SNP 60104 60104 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 62558 62558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C43%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold44 SAMTools SNP 63483 63483 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 63510 63510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C21%2C16%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 64251 64251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C25%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold44 SAMTools SNP 64524 64524 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.59%2C3e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold44 SAMTools SNP 64537 64537 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold44 SAMTools SNP 64632 64632 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C1.4e-11%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold44 SAMTools SNP 64781 64781 92.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C21%2C0:39 scaffold44 SAMTools SNP 64899 64899 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C39%2C0:67 scaffold44 SAMTools SNP 69120 69120 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold44 SAMTools SNP 69183 69183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 69186 69186 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 70842 70842 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 70884 70884 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 70994 70994 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.29%2C2.3e-14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C236:99 scaffold44 SAMTools SNP 71370 71370 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.18%2C0.0014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C214:99 scaffold44 SAMTools SNP 71841 71841 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold44 SAMTools SNP 73406 73406 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44 SAMTools SNP 84245 84245 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C4%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold44 SAMTools SNP 84478 84478 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C23%2C38%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 84683 84683 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold44 SAMTools SNP 84759 84759 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold44 SAMTools SNP 84784 84784 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold44 SAMTools SNP 84805 84805 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44 SAMTools SNP 85136 85136 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C46%2C48%2C43%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 86371 86371 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C27%2C0:51 scaffold44 SAMTools SNP 87253 87253 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C246%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 88268 88268 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold44 SAMTools SNP 88804 88804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C32%2C113%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 89221 89221 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C67%2C20%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 90306 90306 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold44 SAMTools SNP 90471 90471 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold44 SAMTools SNP 90498 90498 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44 SAMTools SNP 90783 90783 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold44 SAMTools SNP 91458 91458 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C87%2C13%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 91539 91539 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C28%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 91596 91596 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C27%2C35%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 91605 91605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C32%2C38%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 94024 94024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C48%2C14%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 94653 94653 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold44 SAMTools SNP 95173 95173 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C21%2C1%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.051%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold44 SAMTools SNP 95975 95975 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C12%2C1%3BMQ%3D49%3BFQ%3D104%3BPV4%3D1%2C4.6e-05%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold44 SAMTools SNP 96111 96111 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 96157 96157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 96468 96468 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C36%2C19%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 96603 96603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C54%2C18%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 102126 102126 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold44 SAMTools SNP 102138 102138 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C110:79 scaffold44 SAMTools SNP 102805 102805 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D37.5%3BPV4%3D1%2C2.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C68:67 scaffold44 SAMTools SNP 103228 103228 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44 SAMTools SNP 103237 103237 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44 SAMTools SNP 103396 103396 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44 SAMTools SNP 103915 103915 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C184:43 scaffold44 SAMTools SNP 105195 105195 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44 SAMTools SNP 109485 109485 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C114:36 scaffold44 SAMTools SNP 112609 112609 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C35%2C0%3BMQ%3D42%3BFQ%3D190%3BPV4%3D0.17%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C217:99 scaffold44 SAMTools SNP 112993 112993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C9%3BMQ%3D35%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold44 SAMTools SNP 114394 114394 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.61%2C1.3e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C218:65 scaffold44 SAMTools SNP 115230 115230 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44 SAMTools SNP 115248 115248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D43%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44 SAMTools SNP 121368 121368 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold44 SAMTools SNP 121969 121969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C161%2C214%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 126509 126509 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C59%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.021%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 126882 126882 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C0.00097%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold44 SAMTools SNP 126988 126988 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C0.021%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold44 SAMTools SNP 127005 127005 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C221:57 scaffold44 SAMTools SNP 127084 127084 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C0%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold44 SAMTools SNP 129787 129787 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold44 SAMTools SNP 137590 137590 45.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold44 SAMTools SNP 139826 139826 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold44 SAMTools SNP 149053 149053 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold44 SAMTools SNP 150408 150408 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold44 SAMTools SNP 150412 150412 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 152123 152123 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold44 SAMTools SNP 153067 153067 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold44 SAMTools SNP 154067 154067 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C96%2C0:99 scaffold44 SAMTools SNP 154598 154598 19 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold44 SAMTools SNP 155703 155703 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C0:53 scaffold44 SAMTools SNP 155914 155914 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C45%2C0:87 scaffold44 SAMTools SNP 218477 218477 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C225:48 scaffold44 SAMTools SNP 218479 218479 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C4%2C0%3BMQ%3D49%3BFQ%3D50%3BPV4%3D1%2C0.016%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C229:80 scaffold44 SAMTools SNP 223043 223043 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 231299 231299 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C0.14%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold44 SAMTools SNP 231596 231596 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 233368 233368 26.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold44 SAMTools SNP 233477 233477 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold44 SAMTools SNP 233751 233751 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold44 SAMTools SNP 233784 233784 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44 SAMTools SNP 233798 233798 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44 SAMTools SNP 235882 235882 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 235903 235903 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 235941 235941 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 235951 235951 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 278588 278588 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 279051 279051 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold44 SAMTools SNP 279056 279056 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold44 SAMTools SNP 316875 316875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44 SAMTools SNP 316896 316896 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44 SAMTools SNP 317440 317440 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold44 SAMTools SNP 317446 317446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44 SAMTools SNP 317510 317510 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C184:99 scaffold44 SAMTools SNP 317515 317515 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold44 SAMTools SNP 317567 317567 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D48%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C3.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold44 SAMTools SNP 317899 317899 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C14%2C42%2C1%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.07%2C2.9e-07%2C1%2C2.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold44 SAMTools SNP 317977 317977 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C60%2C3%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0091%2C1%2C1%2C3.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold44 SAMTools SNP 318351 318351 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C1%2C3%3BMQ%3D48%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C0.061%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold44 SAMTools SNP 318360 318360 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C69%2C0:99 scaffold44 SAMTools SNP 319604 319604 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C13%2C1%3BMQ%3D47%3BFQ%3D199%3BPV4%3D0.12%2C0.031%2C0.04%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold44 SAMTools SNP 319612 319612 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C0%3BMQ%3D45%3BFQ%3D70%3BPV4%3D0.26%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold44 SAMTools SNP 343352 343352 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold44 SAMTools SNP 343701 343701 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C134:99 scaffold44 SAMTools SNP 353325 353325 98.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.33%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C0:3 scaffold44 SAMTools SNP 353743 353743 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.9e-24%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C239:42 scaffold44 SAMTools SNP 353806 353806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C7%2C49%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C9.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 353866 353866 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 353872 353872 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C45%2C39%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 358437 358437 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C69%2C124%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-12%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 360020 360020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold44 SAMTools SNP 360049 360049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44 SAMTools SNP 360985 360985 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D41.7%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C80:72 scaffold44 SAMTools SNP 362677 362677 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C26%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.069%2C4.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C242:99 scaffold44 SAMTools SNP 370029 370029 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C2.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C203:99 scaffold44 SAMTools SNP 370981 370981 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.37%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C157:31 scaffold44 SAMTools SNP 372027 372027 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C5.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold44 SAMTools SNP 372101 372101 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold44 SAMTools SNP 374505 374505 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44 SAMTools SNP 374553 374553 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44 SAMTools SNP 413436 413436 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 414276 414276 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold44 SAMTools SNP 424293 424293 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold44 SAMTools SNP 425230 425230 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44 SAMTools SNP 425330 425330 7.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C18%2C0:21 scaffold44 SAMTools SNP 425350 425350 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C48%2C0:93 scaffold44 SAMTools SNP 426558 426558 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0067%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D41%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C85:34 scaffold44 SAMTools SNP 426623 426623 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold44 SAMTools SNP 427362 427362 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44 SAMTools SNP 428047 428047 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0041%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold44 SAMTools SNP 428677 428677 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold44 SAMTools SNP 428908 428908 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.069%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold44 SAMTools SNP 428935 428935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.37%2C0.12%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold44 SAMTools SNP 429205 429205 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold44 SAMTools SNP 429221 429221 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold44 SAMTools SNP 429346 429346 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D1%2C0.0083%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C57:60 scaffold44 SAMTools SNP 429364 429364 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 429918 429918 191 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C185:99 scaffold44 SAMTools SNP 429923 429923 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold44 SAMTools SNP 430449 430449 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C8.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold44 SAMTools SNP 430470 430470 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold44 SAMTools SNP 430515 430515 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44 SAMTools SNP 431326 431326 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.076%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold44 SAMTools SNP 431335 431335 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44 SAMTools SNP 431758 431758 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold44 SAMTools SNP 431827 431827 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44 SAMTools SNP 432329 432329 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44 SAMTools SNP 432356 432356 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44 SAMTools SNP 432551 432551 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold44 SAMTools SNP 432572 432572 62 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C86%2C77%2C95%2C0%2C89:16 scaffold44 SAMTools SNP 432602 432602 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C110:94 scaffold44 SAMTools SNP 432650 432650 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.00071%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C174:98 scaffold44 SAMTools SNP 432732 432732 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.057%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C230:63 scaffold44 SAMTools SNP 432779 432779 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold44 SAMTools SNP 434732 434732 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C15%2C0:27 scaffold44 SAMTools SNP 434738 434738 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold44 SAMTools SNP 435366 435366 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C8%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.38%2C6.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold44 SAMTools SNP 435370 435370 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44 SAMTools SNP 435440 435440 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C169:99 scaffold44 SAMTools SNP 435473 435473 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.23%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C113:99 scaffold44 SAMTools SNP 435808 435808 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44 SAMTools SNP 435817 435817 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44 SAMTools SNP 435844 435844 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 435861 435861 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C118:99 scaffold44 SAMTools SNP 436042 436042 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44 SAMTools SNP 436111 436111 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44 SAMTools SNP 436120 436120 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold44 SAMTools SNP 436122 436122 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold44 SAMTools SNP 436705 436705 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44 SAMTools SNP 436755 436755 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44 SAMTools SNP 437034 437034 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold44 SAMTools SNP 437085 437085 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold44 SAMTools SNP 437261 437261 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold44 SAMTools SNP 437405 437405 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.38%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold44 SAMTools SNP 437684 437684 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold44 SAMTools SNP 437770 437770 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold44 SAMTools SNP 438304 438304 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold44 SAMTools SNP 438326 438326 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold44 SAMTools SNP 438439 438439 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44 SAMTools SNP 438603 438603 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44 SAMTools SNP 438657 438657 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 439581 439581 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 439871 439871 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold44 SAMTools SNP 439890 439890 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold44 SAMTools SNP 440384 440384 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 440402 440402 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44 SAMTools SNP 440528 440528 98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C31:34 scaffold44 SAMTools SNP 440564 440564 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44 SAMTools SNP 440931 440931 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44 SAMTools SNP 440952 440952 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.27%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold44 SAMTools SNP 440970 440970 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold44 SAMTools SNP 441376 441376 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44 SAMTools SNP 441428 441428 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 441455 441455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44 SAMTools SNP 442807 442807 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.00025%2C4.8e-05%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold44 SAMTools SNP 443236 443236 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C20:23 scaffold44 SAMTools SNP 443867 443867 6.98 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold44 SAMTools SNP 445161 445161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C9%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold44 SAMTools SNP 446973 446973 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C14%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold44 SAMTools SNP 447947 447947 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold44 SAMTools SNP 447952 447952 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold44 SAMTools SNP 447994 447994 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44 SAMTools SNP 448019 448019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold44 SAMTools SNP 448874 448874 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44 SAMTools SNP 448886 448886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44 SAMTools SNP 449315 449315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C58%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold44 SAMTools SNP 451792 451792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44 SAMTools SNP 477160 477160 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44 SAMTools SNP 477297 477297 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44 SAMTools SNP 477298 477298 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44 SAMTools SNP 480184 480184 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44 SAMTools SNP 480231 480231 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C4%3BMQ%3D48%3BFQ%3D20.1%3BPV4%3D0.1%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C224:50 scaffold44 SAMTools SNP 480532 480532 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold440 SAMTools SNP 66702 66702 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D45%3BFQ%3D10.4%3BPV4%3D0.4%2C1%2C0.14%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold440 SAMTools SNP 66732 66732 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold440 SAMTools SNP 66734 66734 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold440 SAMTools SNP 66755 66755 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C73:40 scaffold440 SAMTools SNP 68266 68266 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 68285 68285 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold440 SAMTools SNP 133626 133626 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold440 SAMTools SNP 145002 145002 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold440 SAMTools SNP 152014 152014 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C98:99 scaffold440 SAMTools SNP 152048 152048 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0039%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold440 SAMTools SNP 157743 157743 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 157812 157812 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 158991 158991 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold440 SAMTools SNP 158993 158993 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.06%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold440 SAMTools SNP 159652 159652 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C18%2C0:33 scaffold440 SAMTools SNP 159750 159750 91.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold440 SAMTools SNP 160693 160693 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 161219 161219 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 161282 161282 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold440 SAMTools SNP 161862 161862 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold440 SAMTools SNP 161914 161914 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold440 SAMTools SNP 162436 162436 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold440 SAMTools SNP 163216 163216 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold440 SAMTools SNP 163224 163224 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold440 SAMTools SNP 163837 163837 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold440 SAMTools SNP 164681 164681 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 165024 165024 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold440 SAMTools SNP 165041 165041 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 166460 166460 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold440 SAMTools SNP 166526 166526 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold440 SAMTools SNP 166724 166724 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold440 SAMTools SNP 166818 166818 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.41%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold440 SAMTools SNP 167340 167340 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold440 SAMTools SNP 167364 167364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold440 SAMTools SNP 167812 167812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold440 SAMTools SNP 168136 168136 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold440 SAMTools SNP 168285 168285 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold440 SAMTools SNP 170947 170947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 170956 170956 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 171031 171031 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold440 SAMTools SNP 171730 171730 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold440 SAMTools SNP 171779 171779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 172747 172747 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 173167 173167 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 183696 183696 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold440 SAMTools SNP 184686 184686 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C153:39 scaffold440 SAMTools SNP 208005 208005 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 208026 208026 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 208078 208078 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 208682 208682 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold440 SAMTools SNP 225993 225993 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D44%3BFQ%3D6.58%3BPV4%3D0.012%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C33:36 scaffold440 SAMTools SNP 226219 226219 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C30%2C0:57 scaffold440 SAMTools SNP 228887 228887 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold440 SAMTools SNP 229130 229130 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold440 SAMTools SNP 229253 229253 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold440 SAMTools SNP 229442 229442 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C165%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.21%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold440 SAMTools SNP 229455 229455 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C79%3BMQ%3D50%3BFQ%3D-140%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C113%2C0:99 scaffold440 SAMTools SNP 261072 261072 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold440 SAMTools SNP 261463 261463 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold440 SAMTools SNP 262294 262294 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold440 SAMTools SNP 262296 262296 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold440 SAMTools SNP 264064 264064 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold440 SAMTools SNP 265779 265779 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold440 SAMTools SNP 265832 265832 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold440 SAMTools SNP 265898 265898 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold440 SAMTools SNP 267062 267062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold440 SAMTools SNP 334560 334560 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold440 SAMTools SNP 378360 378360 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold440 SAMTools SNP 381667 381667 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold44006 SAMTools SNP 478 478 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 22471 22471 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold44006 SAMTools SNP 22486 22486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold44006 SAMTools SNP 23385 23385 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold44006 SAMTools SNP 23386 23386 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C16%2C10%2C86%2C0%2C83:10 scaffold44006 SAMTools SNP 23609 23609 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C9.7e-16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C225:62 scaffold44006 SAMTools SNP 24238 24238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44006 SAMTools SNP 24551 24551 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold44006 SAMTools SNP 51627 51627 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44006 SAMTools SNP 57623 57623 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C170:99 scaffold44006 SAMTools SNP 57846 57846 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold44006 SAMTools SNP 58369 58369 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.33%2C0.016%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C138:68 scaffold44006 SAMTools SNP 64082 64082 60.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold44006 SAMTools SNP 64193 64193 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold44006 SAMTools SNP 64628 64628 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C12%2C0:21 scaffold44006 SAMTools SNP 85994 85994 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold44006 SAMTools SNP 90983 90983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44006 SAMTools SNP 92748 92748 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold44006 SAMTools SNP 97298 97298 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D14%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C42%2C0:71 scaffold44006 SAMTools SNP 97328 97328 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold44006 SAMTools SNP 97406 97406 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 97445 97445 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44006 SAMTools SNP 99673 99673 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44006 SAMTools SNP 99679 99679 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 99838 99838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C15%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold44006 SAMTools SNP 100471 100471 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold44006 SAMTools SNP 102525 102525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44006 SAMTools SNP 102939 102939 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0028%2C0.00011%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold44006 SAMTools SNP 102980 102980 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44006 SAMTools SNP 103660 103660 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.061%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C246:64 scaffold44006 SAMTools SNP 103728 103728 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold44006 SAMTools SNP 104273 104273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold44006 SAMTools SNP 104628 104628 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C234:63 scaffold44006 SAMTools SNP 104633 104633 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold44006 SAMTools SNP 105515 105515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 105994 105994 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 107130 107130 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold44006 SAMTools SNP 108012 108012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 108589 108589 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.023%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold44006 SAMTools SNP 112245 112245 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.39%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C220:99 scaffold44006 SAMTools SNP 113005 113005 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold44006 SAMTools SNP 114599 114599 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.02%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold44006 SAMTools SNP 116486 116486 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44006 SAMTools SNP 117351 117351 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C15%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold44006 SAMTools SNP 118503 118503 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold44006 SAMTools SNP 118522 118522 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.011%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold44006 SAMTools SNP 118542 118542 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C79:57 scaffold44006 SAMTools SNP 118618 118618 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold44006 SAMTools SNP 118654 118654 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold44006 SAMTools SNP 119375 119375 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.031%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C202:99 scaffold44006 SAMTools SNP 119427 119427 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.35%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold44006 SAMTools SNP 119825 119825 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold44006 SAMTools SNP 119847 119847 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44006 SAMTools SNP 120680 120680 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold44006 SAMTools SNP 122669 122669 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold44006 SAMTools SNP 122724 122724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D978%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C103%2C298%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44006 SAMTools SNP 122802 122802 82 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D721%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C24%2C0%2C111%2C11%2C108:45 scaffold44006 SAMTools SNP 123048 123048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C263%2C345%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44006 SAMTools SNP 123746 123746 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C181%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44006 SAMTools SNP 123824 123824 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C54%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold44006 SAMTools SNP 123839 123839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C41%2C9%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.0012%2C1%2C1.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 124010 124010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44006 SAMTools SNP 124070 124070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C1%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold44006 SAMTools SNP 124167 124167 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C297%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C255%2C0:99 scaffold44006 SAMTools SNP 124260 124260 62.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D635%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold44006 SAMTools SNP 124332 124332 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold44006 SAMTools SNP 124912 124912 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold44006 SAMTools SNP 124972 124972 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44006 SAMTools SNP 129347 129347 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold44006 SAMTools SNP 131022 131022 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 132819 132819 63.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold44006 SAMTools SNP 133560 133560 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C197:99 scaffold44006 SAMTools SNP 141959 141959 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 145351 145351 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C2%2C1%3BMQ%3D49%3BFQ%3D29%3BPV4%3D0.2%2C0.079%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C233:59 scaffold44006 SAMTools SNP 145352 145352 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C2%2C1%3BMQ%3D49%3BFQ%3D29%3BPV4%3D0.2%2C3.1e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C233:59 scaffold44006 SAMTools SNP 145356 145356 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C25%2C1%3BMQ%3D49%3BFQ%3D29%3BPV4%3D0.2%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C56:59 scaffold44006 SAMTools SNP 146289 146289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44006 SAMTools SNP 148291 148291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44006 SAMTools SNP 158203 158203 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold44006 SAMTools SNP 169248 169248 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 171956 171956 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44006 SAMTools SNP 224011 224011 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 224033 224033 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 225646 225646 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold44006 SAMTools SNP 229997 229997 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold44006 SAMTools SNP 230009 230009 24 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold44006 SAMTools SNP 232099 232099 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44006 SAMTools SNP 235716 235716 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold44006 SAMTools SNP 238234 238234 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold44006 SAMTools SNP 240378 240378 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44006 SAMTools SNP 241060 241060 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44006 SAMTools SNP 241833 241833 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44006 SAMTools SNP 245096 245096 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 246249 246249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 246303 246303 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.008%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold44006 SAMTools SNP 246548 246548 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold44006 SAMTools SNP 246908 246908 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C27%2C0:51 scaffold44006 SAMTools SNP 247738 247738 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44006 SAMTools SNP 250733 250733 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 276497 276497 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D21%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C102%2C0:99 scaffold44006 SAMTools SNP 276517 276517 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D21%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C99%2C0:99 scaffold44006 SAMTools SNP 279919 279919 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44006 SAMTools SNP 279961 279961 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold44006 SAMTools SNP 280119 280119 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C23%2C4%3BMQ%3D49%3BFQ%3D-53%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C26%2C0:49 scaffold44006 SAMTools SNP 286908 286908 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold44006 SAMTools SNP 286912 286912 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold44006 SAMTools SNP 287006 287006 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 287029 287029 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 287960 287960 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold44006 SAMTools SNP 287965 287965 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44006 SAMTools SNP 288458 288458 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold44006 SAMTools SNP 288761 288761 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44006 SAMTools SNP 288982 288982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44006 SAMTools SNP 288993 288993 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 289092 289092 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold44006 SAMTools SNP 289955 289955 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.22%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold44006 SAMTools SNP 290314 290314 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44006 SAMTools SNP 290318 290318 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C31:34 scaffold44006 SAMTools SNP 291281 291281 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44006 SAMTools SNP 291323 291323 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold44006 SAMTools SNP 291767 291767 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C0.075%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C214:46 scaffold44006 SAMTools SNP 292141 292141 222 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0%2C247%2C31%2C244:99 scaffold44006 SAMTools SNP 292157 292157 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44006 SAMTools SNP 292404 292404 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C70:73 scaffold44006 SAMTools SNP 292415 292415 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C19%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.42%2C0.23%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold44006 SAMTools SNP 292848 292848 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold44006 SAMTools SNP 292866 292866 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.47%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold44006 SAMTools SNP 292876 292876 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold44006 SAMTools SNP 292949 292949 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44006 SAMTools SNP 292979 292979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44006 SAMTools SNP 293184 293184 175 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C81%2C0:99 scaffold44006 SAMTools SNP 293315 293315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44006 SAMTools SNP 293546 293546 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold44006 SAMTools SNP 293644 293644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 294241 294241 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold44006 SAMTools SNP 294672 294672 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C0.4%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold44006 SAMTools SNP 295005 295005 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold44006 SAMTools SNP 295241 295241 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold44006 SAMTools SNP 296198 296198 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 296256 296256 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 296292 296292 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C236:99 scaffold44006 SAMTools SNP 296702 296702 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 297977 297977 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C27%2C0:43 scaffold44006 SAMTools SNP 299056 299056 21.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold44006 SAMTools SNP 299107 299107 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold44006 SAMTools SNP 299517 299517 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D5.73%3BPV4%3D0.17%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold44006 SAMTools SNP 299545 299545 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44006 SAMTools SNP 300014 300014 59.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold44006 SAMTools SNP 300026 300026 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold44006 SAMTools SNP 300368 300368 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.11%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C117:37 scaffold44006 SAMTools SNP 300436 300436 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44006 SAMTools SNP 300903 300903 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C162:69 scaffold44006 SAMTools SNP 300912 300912 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold44006 SAMTools SNP 300941 300941 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 300995 300995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold44006 SAMTools SNP 301223 301223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C23%2C4%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold44006 SAMTools SNP 301248 301248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C15%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.69%2C0.25%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold44006 SAMTools SNP 302636 302636 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 302640 302640 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44006 SAMTools SNP 305388 305388 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold44006 SAMTools SNP 305904 305904 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C48%2C0:93 scaffold44006 SAMTools SNP 305916 305916 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 306134 306134 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold44006 SAMTools SNP 306137 306137 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold44006 SAMTools SNP 306188 306188 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold44006 SAMTools SNP 307084 307084 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold44006 SAMTools SNP 307314 307314 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C9%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold44006 SAMTools SNP 307871 307871 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.44%2C0.43%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C192:72 scaffold44006 SAMTools SNP 307892 307892 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold44006 SAMTools SNP 309277 309277 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44006 SAMTools SNP 309772 309772 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C219:66 scaffold44006 SAMTools SNP 309773 309773 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C232:63 scaffold44006 SAMTools SNP 310597 310597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C9%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 310848 310848 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C18%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00035%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold44006 SAMTools SNP 339034 339034 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C48%2C0:93 scaffold44006 SAMTools SNP 370671 370671 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold44006 SAMTools SNP 371258 371258 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C21%2C0:39 scaffold44006 SAMTools SNP 371528 371528 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold44006 SAMTools SNP 371808 371808 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44006 SAMTools SNP 373131 373131 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44006 SAMTools SNP 373947 373947 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 374598 374598 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44006 SAMTools SNP 376263 376263 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44006 SAMTools SNP 380677 380677 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C25%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.0071%2C0.42%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C198:99 scaffold44006 SAMTools SNP 380691 380691 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44006 SAMTools SNP 381353 381353 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold44006 SAMTools SNP 381675 381675 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44006 SAMTools SNP 381692 381692 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44006 SAMTools SNP 382288 382288 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.097%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold44006 SAMTools SNP 382310 382310 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 382337 382337 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C30%2C0:57 scaffold44006 SAMTools SNP 382362 382362 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold44006 SAMTools SNP 382826 382826 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.7e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold44006 SAMTools SNP 383070 383070 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.2e-20%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C157:43 scaffold44006 SAMTools SNP 393736 393736 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold44006 SAMTools SNP 393768 393768 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold44006 SAMTools SNP 394122 394122 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold44006 SAMTools SNP 402025 402025 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 410262 410262 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 410290 410290 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44006 SAMTools SNP 411787 411787 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44006 SAMTools SNP 411826 411826 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.42%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44006 SAMTools SNP 416466 416466 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44006 SAMTools SNP 419290 419290 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 419397 419397 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 420048 420048 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold44006 SAMTools SNP 420392 420392 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44006 SAMTools SNP 422454 422454 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold44006 SAMTools SNP 422866 422866 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44006 SAMTools SNP 422912 422912 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44006 SAMTools SNP 423184 423184 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold44006 SAMTools SNP 423318 423318 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44006 SAMTools SNP 423399 423399 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C2.4e-06%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C82:59 scaffold44006 SAMTools SNP 423441 423441 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold44006 SAMTools SNP 424456 424456 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C214:99 scaffold44006 SAMTools SNP 424705 424705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44006 SAMTools SNP 424711 424711 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44006 SAMTools SNP 425090 425090 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.43%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C160:99 scaffold44006 SAMTools SNP 425138 425138 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold44006 SAMTools SNP 425156 425156 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.017%2C7.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold44006 SAMTools SNP 425924 425924 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold44006 SAMTools SNP 426074 426074 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold44006 SAMTools SNP 426584 426584 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.21%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold44006 SAMTools SNP 426590 426590 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold44006 SAMTools SNP 426623 426623 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C165:99 scaffold44006 SAMTools SNP 426650 426650 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C129:99 scaffold44006 SAMTools SNP 426959 426959 75.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold44008 SAMTools SNP 6412 6412 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold44008 SAMTools SNP 45885 45885 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C131:69 scaffold44008 SAMTools SNP 46579 46579 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold44008 SAMTools SNP 46725 46725 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold44008 SAMTools SNP 47849 47849 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 49717 49717 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.42%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold44008 SAMTools SNP 49804 49804 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.011%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold44008 SAMTools SNP 50046 50046 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold44008 SAMTools SNP 50085 50085 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.19%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold44008 SAMTools SNP 53260 53260 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold44008 SAMTools SNP 55346 55346 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 55366 55366 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 55685 55685 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold44008 SAMTools SNP 55718 55718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44008 SAMTools SNP 55736 55736 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44008 SAMTools SNP 57154 57154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44008 SAMTools SNP 57878 57878 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44008 SAMTools SNP 57884 57884 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44008 SAMTools SNP 57899 57899 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44008 SAMTools SNP 60458 60458 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C0.28%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold44008 SAMTools SNP 61146 61146 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C252:96 scaffold44008 SAMTools SNP 62272 62272 58.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold44008 SAMTools SNP 62510 62510 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C45%2C0:87 scaffold44008 SAMTools SNP 66873 66873 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 67771 67771 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44008 SAMTools SNP 67786 67786 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44008 SAMTools SNP 67900 67900 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44008 SAMTools SNP 68462 68462 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 72349 72349 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 72379 72379 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44008 SAMTools SNP 72463 72463 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold44008 SAMTools SNP 73672 73672 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold44008 SAMTools SNP 73707 73707 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold44008 SAMTools SNP 76172 76172 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold44008 SAMTools SNP 115353 115353 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold44008 SAMTools SNP 116022 116022 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C179:93 scaffold44008 SAMTools SNP 116166 116166 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C252:66 scaffold44008 SAMTools SNP 116383 116383 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold44008 SAMTools SNP 116744 116744 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.63%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold44008 SAMTools SNP 117863 117863 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44008 SAMTools SNP 118282 118282 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 118350 118350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 118644 118644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold44008 SAMTools SNP 118871 118871 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold44008 SAMTools SNP 119285 119285 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold44008 SAMTools SNP 120309 120309 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 120482 120482 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold44008 SAMTools SNP 120539 120539 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.12%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold44008 SAMTools SNP 120693 120693 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C230:98 scaffold44008 SAMTools SNP 120713 120713 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44008 SAMTools SNP 120750 120750 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0012%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold44008 SAMTools SNP 121351 121351 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold44008 SAMTools SNP 121396 121396 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold44008 SAMTools SNP 122686 122686 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.0042%2C1%2C7.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C115:99 scaffold44008 SAMTools SNP 122809 122809 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold44008 SAMTools SNP 122860 122860 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C62:65 scaffold44008 SAMTools SNP 122868 122868 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.3%2C0.33%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold44008 SAMTools SNP 123299 123299 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C28%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.29%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold44008 SAMTools SNP 123313 123313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44008 SAMTools SNP 125787 125787 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 125827 125827 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 126754 126754 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 126819 126819 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 126840 126840 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 127431 127431 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 128576 128576 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 128582 128582 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 128909 128909 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold44008 SAMTools SNP 133645 133645 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C104:70 scaffold44008 SAMTools SNP 133664 133664 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C9.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C104:36 scaffold44008 SAMTools SNP 134725 134725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C16%2C52%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 134761 134761 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C21%2C41%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 134790 134790 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C1%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0053%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 134806 134806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C49%2C20%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 134809 134809 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C50%2C3%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00057%2C0.18%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 135260 135260 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.034%2C0.42%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold44008 SAMTools SNP 135730 135730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44008 SAMTools SNP 135742 135742 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44008 SAMTools SNP 135793 135793 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.53%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold44008 SAMTools SNP 135990 135990 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.55%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold44008 SAMTools SNP 136174 136174 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold44008 SAMTools SNP 136180 136180 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold44008 SAMTools SNP 136243 136243 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold44008 SAMTools SNP 136553 136553 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44008 SAMTools SNP 136559 136559 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C24%2C0:45 scaffold44008 SAMTools SNP 136709 136709 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold44008 SAMTools SNP 136713 136713 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold44008 SAMTools SNP 136975 136975 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold44008 SAMTools SNP 136990 136990 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C22%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold44008 SAMTools SNP 137364 137364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C2%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold44008 SAMTools SNP 137415 137415 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 137438 137438 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C46%3BMQ%3D50%3BFQ%3D84%3BPV4%3D2.3e-06%2C7.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C155:99 scaffold44008 SAMTools SNP 137728 137728 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.27%2C0.00049%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold44008 SAMTools SNP 137743 137743 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.26%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold44008 SAMTools SNP 137818 137818 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C13%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D0.48%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold44008 SAMTools SNP 137998 137998 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 138371 138371 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C17%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1.3e-42%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 138398 138398 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C248:99 scaffold44008 SAMTools SNP 138633 138633 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold44008 SAMTools SNP 138851 138851 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 138854 138854 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 139500 139500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C12%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold44008 SAMTools SNP 139939 139939 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 140062 140062 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold44008 SAMTools SNP 140071 140071 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold44008 SAMTools SNP 140431 140431 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold44008 SAMTools SNP 140492 140492 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C0.48%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C242:99 scaffold44008 SAMTools SNP 148734 148734 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold44008 SAMTools SNP 149165 149165 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44008 SAMTools SNP 150224 150224 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold44008 SAMTools SNP 150636 150636 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C39%2C0:75 scaffold44008 SAMTools SNP 151010 151010 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C255%2C0:99 scaffold44008 SAMTools SNP 151378 151378 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C66%2C0:99 scaffold44008 SAMTools SNP 151670 151670 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold44008 SAMTools SNP 151694 151694 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold44008 SAMTools SNP 151826 151826 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold44008 SAMTools SNP 152811 152811 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C0.27%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C188:99 scaffold44008 SAMTools SNP 152892 152892 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold44008 SAMTools SNP 152910 152910 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold44008 SAMTools SNP 154440 154440 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold44008 SAMTools SNP 154565 154565 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C4%3BMQ%3D49%3BFQ%3D108%3BPV4%3D0.35%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C243:99 scaffold44008 SAMTools SNP 155558 155558 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.52%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold44008 SAMTools SNP 156121 156121 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold44008 SAMTools SNP 156170 156170 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold44008 SAMTools SNP 156578 156578 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44008 SAMTools SNP 156665 156665 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.086%2C4.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold44008 SAMTools SNP 157016 157016 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold44008 SAMTools SNP 157260 157260 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold44008 SAMTools SNP 158873 158873 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.48%2C7.3e-42%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C222:87 scaffold44008 SAMTools SNP 176626 176626 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold44008 SAMTools SNP 176739 176739 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 176764 176764 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold44008 SAMTools SNP 177134 177134 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold44008 SAMTools SNP 181183 181183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C68%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold44008 SAMTools SNP 186069 186069 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C32%2C18%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44008 SAMTools SNP 186111 186111 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C221:99 scaffold44008 SAMTools SNP 186166 186166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C49%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold44008 SAMTools SNP 186651 186651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C36%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold44008 SAMTools SNP 186848 186848 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C239:50 scaffold44008 SAMTools SNP 187032 187032 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold44008 SAMTools SNP 187132 187132 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold44008 SAMTools SNP 212446 212446 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold44008 SAMTools SNP 217845 217845 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold44008 SAMTools SNP 218495 218495 55.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold44008 SAMTools SNP 221661 221661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44008 SAMTools SNP 223089 223089 64.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold44008 SAMTools SNP 225693 225693 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 251460 251460 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold44008 SAMTools SNP 253079 253079 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C39%2C0:75 scaffold44008 SAMTools SNP 254890 254890 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.031%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold44008 SAMTools SNP 255263 255263 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold44008 SAMTools SNP 255302 255302 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.25%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C209:99 scaffold44008 SAMTools SNP 261346 261346 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold44008 SAMTools SNP 276105 276105 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C71:74 scaffold44008 SAMTools SNP 276174 276174 67.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold44008 SAMTools SNP 276271 276271 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold44008 SAMTools SNP 276696 276696 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C169:99 scaffold44008 SAMTools SNP 346971 346971 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold44008 SAMTools SNP 348067 348067 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold44008 SAMTools SNP 348085 348085 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C20%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold44008 SAMTools SNP 348310 348310 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.092%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C150:99 scaffold44008 SAMTools SNP 348472 348472 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold44008 SAMTools SNP 349853 349853 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.14%3BPV4%3D0.33%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C49:31 scaffold44008 SAMTools SNP 349930 349930 19.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold44008 SAMTools SNP 350338 350338 36.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold44008 SAMTools SNP 350408 350408 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold44008 SAMTools SNP 350679 350679 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold44008 SAMTools SNP 350797 350797 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold44008 SAMTools SNP 352173 352173 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold44008 SAMTools SNP 356125 356125 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.14%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold44008 SAMTools SNP 356418 356418 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold44008 SAMTools SNP 356749 356749 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44008 SAMTools SNP 356782 356782 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.49%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C251:99 scaffold44008 SAMTools SNP 357050 357050 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold44008 SAMTools SNP 357052 357052 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold44008 SAMTools SNP 357082 357082 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C172:99 scaffold44008 SAMTools SNP 357550 357550 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 357559 357559 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 357628 357628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 358582 358582 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 359040 359040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 359046 359046 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 360658 360658 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44008 SAMTools SNP 360797 360797 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 360909 360909 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 360922 360922 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 361296 361296 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C230:99 scaffold44008 SAMTools SNP 361744 361744 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44008 SAMTools SNP 361768 361768 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44008 SAMTools SNP 362306 362306 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 362924 362924 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 363592 363592 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 393761 393761 17.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold44008 SAMTools SNP 397209 397209 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 397211 397211 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 397212 397212 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 397248 397248 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44008 SAMTools SNP 399977 399977 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C200:28 scaffold44008 SAMTools SNP 400025 400025 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44008 SAMTools SNP 400359 400359 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44008 SAMTools SNP 400859 400859 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold44008 SAMTools SNP 401388 401388 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44008 SAMTools SNP 401409 401409 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44008 SAMTools SNP 401677 401677 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44008 SAMTools SNP 401734 401734 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold44008 SAMTools SNP 401749 401749 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 403338 403338 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold44008 SAMTools SNP 404007 404007 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C110:41 scaffold44008 SAMTools SNP 404029 404029 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold44008 SAMTools SNP 404067 404067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 407490 407490 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44008 SAMTools SNP 407559 407559 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 407736 407736 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44008 SAMTools SNP 407819 407819 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.25%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C78:81 scaffold44008 SAMTools SNP 407822 407822 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0056%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold44008 SAMTools SNP 408271 408271 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold44008 SAMTools SNP 409062 409062 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold44008 SAMTools SNP 409090 409090 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44008 SAMTools SNP 409842 409842 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44008 SAMTools SNP 412475 412475 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44008 SAMTools SNP 413439 413439 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.7e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C251:39 scaffold44008 SAMTools SNP 413445 413445 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.00029%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C193:70 scaffold44008 SAMTools SNP 414099 414099 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold44008 SAMTools SNP 414655 414655 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.094%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold44008 SAMTools SNP 414896 414896 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold44008 SAMTools SNP 415000 415000 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C39%2C0:75 scaffold44008 SAMTools SNP 415469 415469 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44008 SAMTools SNP 415484 415484 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold44008 SAMTools SNP 416295 416295 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C231:99 scaffold44008 SAMTools SNP 416746 416746 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold44054 SAMTools SNP 1311 1311 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 1404 1404 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 1408 1408 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 39373 39373 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 39842 39842 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold44054 SAMTools SNP 43901 43901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold44054 SAMTools SNP 43954 43954 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.3%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold44054 SAMTools SNP 43980 43980 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold44054 SAMTools SNP 44496 44496 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.33%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C82:85 scaffold44054 SAMTools SNP 44501 44501 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold44054 SAMTools SNP 46451 46451 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold44054 SAMTools SNP 46487 46487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44054 SAMTools SNP 46634 46634 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44054 SAMTools SNP 46961 46961 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44054 SAMTools SNP 47048 47048 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 50392 50392 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 50677 50677 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44054 SAMTools SNP 51618 51618 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C348%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 51864 51864 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44054 SAMTools SNP 52862 52862 95.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold44054 SAMTools SNP 53432 53432 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C84%2C0:99 scaffold44054 SAMTools SNP 53753 53753 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold44054 SAMTools SNP 53864 53864 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C26%2C11%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.21%2C3.7e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold44054 SAMTools SNP 53952 53952 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C57%2C0:95 scaffold44054 SAMTools SNP 53954 53954 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C57%2C0:95 scaffold44054 SAMTools SNP 54041 54041 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C22%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C181%2C0:99 scaffold44054 SAMTools SNP 54281 54281 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C54%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D1%2C1.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C119%2C0:99 scaffold44054 SAMTools SNP 54956 54956 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C23%2C73%2C25%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.031%2C5.5e-166%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold44054 SAMTools SNP 55034 55034 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C51%2C79%2C80%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.00044%2C7.4e-164%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold44054 SAMTools SNP 56553 56553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 56764 56764 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44054 SAMTools SNP 57119 57119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C224%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 57167 57167 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C71%3BMQ%3D50%3BFQ%3D-248%3BPV4%3D0.24%2C7.2e-09%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C221%2C0:99 scaffold44054 SAMTools SNP 57347 57347 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold44054 SAMTools SNP 57758 57758 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold44054 SAMTools SNP 75844 75844 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold44054 SAMTools SNP 123671 123671 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D44%3BFQ%3D77%3BPV4%3D1%2C1%2C0.44%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C133:99 scaffold44054 SAMTools SNP 124070 124070 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D21%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold44054 SAMTools SNP 124127 124127 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C7%2C3%3BMQ%3D47%3BFQ%3D224%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold44054 SAMTools SNP 124151 124151 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C9%2C3%3BMQ%3D47%3BFQ%3D158%3BPV4%3D0.02%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold44054 SAMTools SNP 125277 125277 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold44054 SAMTools SNP 127081 127081 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C213:99 scaffold44054 SAMTools SNP 127188 127188 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold44054 SAMTools SNP 127965 127965 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 153262 153262 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 153295 153295 58.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold44054 SAMTools SNP 157875 157875 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold44054 SAMTools SNP 158525 158525 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold44054 SAMTools SNP 162733 162733 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 163910 163910 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold44054 SAMTools SNP 163914 163914 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.29%2C0.024%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold44054 SAMTools SNP 163919 163919 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold44054 SAMTools SNP 166071 166071 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold44054 SAMTools SNP 179338 179338 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold44054 SAMTools SNP 179522 179522 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C11%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.46%2C7.1e-19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold44054 SAMTools SNP 179567 179567 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.062%2C6.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold44054 SAMTools SNP 179699 179699 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C54%2C0:99 scaffold44054 SAMTools SNP 179702 179702 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C39%2C0:75 scaffold44054 SAMTools SNP 181596 181596 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.05%2C8.5e-10%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C228:99 scaffold44054 SAMTools SNP 182554 182554 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold44054 SAMTools SNP 182684 182684 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold44054 SAMTools SNP 183357 183357 33.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold44054 SAMTools SNP 184237 184237 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold44054 SAMTools SNP 187341 187341 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C65:68 scaffold44054 SAMTools SNP 187349 187349 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold44054 SAMTools SNP 187748 187748 24.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold44054 SAMTools SNP 189989 189989 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold44054 SAMTools SNP 189999 189999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold44054 SAMTools SNP 190073 190073 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C195:54 scaffold44054 SAMTools SNP 190254 190254 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C170:48 scaffold44054 SAMTools SNP 191355 191355 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold44054 SAMTools SNP 191638 191638 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold44054 SAMTools SNP 198653 198653 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold44054 SAMTools SNP 198676 198676 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44054 SAMTools SNP 198788 198788 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C66:69 scaffold44054 SAMTools SNP 198830 198830 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold44054 SAMTools SNP 198848 198848 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44054 SAMTools SNP 199839 199839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold44054 SAMTools SNP 199857 199857 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold44054 SAMTools SNP 199875 199875 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.034%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold44054 SAMTools SNP 199887 199887 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 200722 200722 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C70%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 200725 200725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C7%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 200752 200752 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 200770 200770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C63%2C26%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 200939 200939 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.32%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold44054 SAMTools SNP 200966 200966 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 201023 201023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C75%2C12%3BMQ%3D50%3BFQ%3D-242%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C215%2C0:99 scaffold44054 SAMTools SNP 201156 201156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C6%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold44054 SAMTools SNP 201643 201643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1e-05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 201706 201706 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 201912 201912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C13%2C52%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 203123 203123 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C18%2C13%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.087%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold44054 SAMTools SNP 203138 203138 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C134%2C28%2C12%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold44054 SAMTools SNP 203448 203448 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C160%2C39%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D2e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold44054 SAMTools SNP 203736 203736 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C31%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 204841 204841 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C64%2C74%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C5.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 211754 211754 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold44054 SAMTools SNP 211782 211782 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C248:99 scaffold44054 SAMTools SNP 211812 211812 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C224:99 scaffold44054 SAMTools SNP 212304 212304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold44054 SAMTools SNP 213625 213625 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 213710 213710 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.062%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold44054 SAMTools SNP 213767 213767 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold44054 SAMTools SNP 219078 219078 74.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold44054 SAMTools SNP 219381 219381 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C90%2C10%2C98%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00014%2C1.6e-179%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold44054 SAMTools SNP 219517 219517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 220542 220542 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44054 SAMTools SNP 220603 220603 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D49%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44054 SAMTools SNP 221574 221574 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold44054 SAMTools SNP 221618 221618 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44054 SAMTools SNP 221693 221693 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44054 SAMTools SNP 221732 221732 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 221780 221780 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 222275 222275 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold44054 SAMTools SNP 222523 222523 4.24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C8%2C0:7 scaffold44054 SAMTools SNP 222762 222762 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold44054 SAMTools SNP 223666 223666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C44%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold44054 SAMTools SNP 223675 223675 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C41%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold44054 SAMTools SNP 223923 223923 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C24%2C0:45 scaffold44054 SAMTools SNP 224062 224062 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44054 SAMTools SNP 229816 229816 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold44054 SAMTools SNP 249700 249700 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44054 SAMTools SNP 249712 249712 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 249736 249736 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44054 SAMTools SNP 251047 251047 92.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold44054 SAMTools SNP 280731 280731 53 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C43%2C40%2C82%2C0%2C80:6 scaffold44054 SAMTools SNP 280799 280799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold44054 SAMTools SNP 288014 288014 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 294141 294141 23.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold44054 SAMTools SNP 294347 294347 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C50%2C1%2C13%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.1%2C6.1e-16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold44054 SAMTools SNP 294467 294467 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C25%2C31%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0065%2C2.5e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold44054 SAMTools SNP 294578 294578 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C36%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold44054 SAMTools SNP 294611 294611 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 296347 296347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C12%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold44054 SAMTools SNP 296389 296389 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.011%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C126:43 scaffold44054 SAMTools SNP 297605 297605 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C66%2C0:99 scaffold44054 SAMTools SNP 298058 298058 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C243:40 scaffold44054 SAMTools SNP 298882 298882 103 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C57%2C0:99 scaffold44054 SAMTools SNP 300754 300754 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C28%2C11%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 300979 300979 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C33%2C15%2C18%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.00012%2C0.49%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold44054 SAMTools SNP 301548 301548 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C27%2C0:51 scaffold44054 SAMTools SNP 301568 301568 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0072%2C1%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold44054 SAMTools SNP 301569 301569 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C8%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.015%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold44054 SAMTools SNP 302399 302399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C58%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold44054 SAMTools SNP 302408 302408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44054 SAMTools SNP 305614 305614 30.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0013%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1.4e-07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C14:17 scaffold44054 SAMTools SNP 305910 305910 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 306851 306851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44054 SAMTools SNP 308009 308009 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold44054 SAMTools SNP 308018 308018 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44054 SAMTools SNP 308027 308027 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44054 SAMTools SNP 308296 308296 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C110:59 scaffold44054 SAMTools SNP 308686 308686 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold44054 SAMTools SNP 314524 314524 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44054 SAMTools SNP 315714 315714 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44054 SAMTools SNP 315764 315764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44054 SAMTools SNP 316574 316574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44054 SAMTools SNP 316820 316820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44054 SAMTools SNP 316847 316847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44054 SAMTools SNP 317389 317389 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold44054 SAMTools SNP 318248 318248 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold44054 SAMTools SNP 322402 322402 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44054 SAMTools SNP 322467 322467 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold44054 SAMTools SNP 326225 326225 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold44054 SAMTools SNP 326251 326251 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold44054 SAMTools SNP 327748 327748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D49%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold44054 SAMTools SNP 327754 327754 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold44054 SAMTools SNP 327835 327835 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 329345 329345 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold44054 SAMTools SNP 329354 329354 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C0.0015%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold44054 SAMTools SNP 329387 329387 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44054 SAMTools SNP 329438 329438 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44054 SAMTools SNP 330491 330491 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold44054 SAMTools SNP 331562 331562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.094%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold44054 SAMTools SNP 353755 353755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44054 SAMTools SNP 353794 353794 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.43%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C197:64 scaffold44054 SAMTools SNP 355286 355286 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold44054 SAMTools SNP 355963 355963 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C245:99 scaffold44054 SAMTools SNP 367583 367583 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold44054 SAMTools SNP 367685 367685 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00043%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold44054 SAMTools SNP 372289 372289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold44054 SAMTools SNP 388362 388362 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D52.6%3BPV4%3D0.4%2C6.4e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C85:83 scaffold44054 SAMTools SNP 391485 391485 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold44054 SAMTools SNP 397842 397842 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44054 SAMTools SNP 397951 397951 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C141:99 scaffold44054 SAMTools SNP 400651 400651 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44054 SAMTools SNP 401003 401003 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold44054 SAMTools SNP 401059 401059 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold44054 SAMTools SNP 403241 403241 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold44054 SAMTools SNP 403805 403805 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 403826 403826 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44054 SAMTools SNP 404011 404011 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold44054 SAMTools SNP 404474 404474 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 404881 404881 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C200:99 scaffold44054 SAMTools SNP 404894 404894 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44054 SAMTools SNP 423028 423028 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44054 SAMTools SNP 423519 423519 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold44054 SAMTools SNP 428875 428875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 428901 428901 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 428910 428910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 428952 428952 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44054 SAMTools SNP 428982 428982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44054 SAMTools SNP 428985 428985 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold44054 SAMTools SNP 429634 429634 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44054 SAMTools SNP 429667 429667 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold44054 SAMTools SNP 430650 430650 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold44054 SAMTools SNP 431126 431126 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.055%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 432006 432006 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 432021 432021 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold44054 SAMTools SNP 434459 434459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold44054 SAMTools SNP 437347 437347 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold44054 SAMTools SNP 437384 437384 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44054 SAMTools SNP 439403 439403 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C21%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.16%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold44054 SAMTools SNP 443200 443200 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C240:61 scaffold44054 SAMTools SNP 443201 443201 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold44054 SAMTools SNP 443229 443229 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold44054 SAMTools SNP 443988 443988 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold44054 SAMTools SNP 447757 447757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44054 SAMTools SNP 447823 447823 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C239:99 scaffold44054 SAMTools SNP 447859 447859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold44054 SAMTools SNP 448866 448866 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold44054 SAMTools SNP 448868 448868 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C32%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1.2e-05%2C5.7e-15%2C1%2C3.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold44054 SAMTools SNP 448872 448872 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C3%2C6%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.35%2C8.9e-05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold44054 SAMTools SNP 451786 451786 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold44054 SAMTools SNP 451792 451792 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.085%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold44054 SAMTools SNP 456052 456052 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold44054 SAMTools SNP 457174 457174 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.025%2C1.8e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold44054 SAMTools SNP 457987 457987 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.2e-08%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C185:54 scaffold44054 SAMTools SNP 458108 458108 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C6%2C12%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C4.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold44054 SAMTools SNP 460673 460673 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold44064 SAMTools SNP 431 431 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 432 432 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 508 508 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44064 SAMTools SNP 510 510 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44064 SAMTools SNP 12467 12467 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.31%2C9.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C130:77 scaffold44064 SAMTools SNP 12728 12728 37.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold44064 SAMTools SNP 13169 13169 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold44064 SAMTools SNP 14813 14813 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C0%2C9%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold44064 SAMTools SNP 14828 14828 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C0%2C11%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.19%2C0.3%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold44064 SAMTools SNP 15266 15266 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold44064 SAMTools SNP 15268 15268 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold44064 SAMTools SNP 16251 16251 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.28%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold44064 SAMTools SNP 16751 16751 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold44064 SAMTools SNP 16778 16778 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold44064 SAMTools SNP 26097 26097 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.28%2C0.15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold44064 SAMTools SNP 28372 28372 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C12%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.075%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold44064 SAMTools SNP 28376 28376 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44064 SAMTools SNP 28424 28424 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C13%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.14%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold44064 SAMTools SNP 28487 28487 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 31314 31314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44064 SAMTools SNP 31317 31317 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44064 SAMTools SNP 31383 31383 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C5%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.25%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold44064 SAMTools SNP 31794 31794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44064 SAMTools SNP 31842 31842 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C169:99 scaffold44064 SAMTools SNP 31887 31887 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C33%2C0:63 scaffold44064 SAMTools SNP 32686 32686 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.29%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold44064 SAMTools SNP 32710 32710 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C40:42 scaffold44064 SAMTools SNP 40517 40517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C280%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 40944 40944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C238%2C108%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-61%2C0.034%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 41077 41077 65.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold44064 SAMTools SNP 42014 42014 26.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D669%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold44064 SAMTools SNP 47067 47067 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 47095 47095 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44064 SAMTools SNP 47275 47275 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 47286 47286 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 55870 55870 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C11%2C53%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C4.1e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold44064 SAMTools SNP 56011 56011 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold44064 SAMTools SNP 57267 57267 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C5%2C0%2C19%3BMQ%3D50%3BFQ%3D49%3BPV4%3D3e-17%2C9.5e-15%2C1%2C5.4e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold44064 SAMTools SNP 57848 57848 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0018%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold44064 SAMTools SNP 57934 57934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44064 SAMTools SNP 70498 70498 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold44064 SAMTools SNP 70770 70770 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44064 SAMTools SNP 70831 70831 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold44064 SAMTools SNP 71315 71315 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 71321 71321 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44064 SAMTools SNP 71360 71360 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C3%2C31%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.00017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C15:18 scaffold44064 SAMTools SNP 71786 71786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44064 SAMTools SNP 72195 72195 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44064 SAMTools SNP 73828 73828 86.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C23%2C2%2C107%2C0%2C104:39 scaffold44064 SAMTools SNP 73831 73831 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C27%2C0:51 scaffold44064 SAMTools SNP 76530 76530 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 76572 76572 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 78076 78076 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 78644 78644 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C55%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold44064 SAMTools SNP 78773 78773 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold44064 SAMTools SNP 79403 79403 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.012%2C5.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C176:75 scaffold44064 SAMTools SNP 79604 79604 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold44064 SAMTools SNP 80664 80664 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C78%2C0:99 scaffold44064 SAMTools SNP 80906 80906 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 83300 83300 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44064 SAMTools SNP 85175 85175 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1.3e-05%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold44064 SAMTools SNP 85238 85238 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 87445 87445 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C25%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold44064 SAMTools SNP 87981 87981 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C0.37%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold44064 SAMTools SNP 93538 93538 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold44064 SAMTools SNP 93592 93592 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold44064 SAMTools SNP 94466 94466 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44064 SAMTools SNP 94477 94477 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold44064 SAMTools SNP 94487 94487 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44064 SAMTools SNP 97210 97210 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C39%2C0:75 scaffold44064 SAMTools SNP 97282 97282 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44064 SAMTools SNP 97332 97332 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C4%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 97336 97336 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C42%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 97363 97363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C15%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 98130 98130 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C225:68 scaffold44064 SAMTools SNP 98217 98217 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C135:68 scaffold44064 SAMTools SNP 98819 98819 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold44064 SAMTools SNP 98829 98829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44064 SAMTools SNP 99865 99865 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.0021%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold44064 SAMTools SNP 99937 99937 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold44064 SAMTools SNP 100372 100372 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 104577 104577 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C231:99 scaffold44064 SAMTools SNP 106186 106186 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C4%2C20%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.57%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold44064 SAMTools SNP 106231 106231 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C4%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.74%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold44064 SAMTools SNP 106253 106253 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C58%2C1%2C27%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.17%2C8.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold44064 SAMTools SNP 106540 106540 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C56%2C6%2C8%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold44064 SAMTools SNP 106571 106571 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C19%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold44064 SAMTools SNP 106588 106588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold44064 SAMTools SNP 107261 107261 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C42%2C0:81 scaffold44064 SAMTools SNP 107470 107470 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C118:42 scaffold44064 SAMTools SNP 107605 107605 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C3.1e-09%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C158:69 scaffold44064 SAMTools SNP 107941 107941 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44064 SAMTools SNP 107950 107950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44064 SAMTools SNP 107968 107968 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold44064 SAMTools SNP 108236 108236 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold44064 SAMTools SNP 108299 108299 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44064 SAMTools SNP 108809 108809 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold44064 SAMTools SNP 109610 109610 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C3%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.37%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold44064 SAMTools SNP 109625 109625 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C254:99 scaffold44064 SAMTools SNP 110003 110003 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold44064 SAMTools SNP 110024 110024 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.12%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold44064 SAMTools SNP 110243 110243 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 110273 110273 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 110381 110381 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C237:99 scaffold44064 SAMTools SNP 110667 110667 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44064 SAMTools SNP 110838 110838 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C0.25%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C252:98 scaffold44064 SAMTools SNP 111240 111240 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C0.24%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold44064 SAMTools SNP 111261 111261 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold44064 SAMTools SNP 112359 112359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C14%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 112373 112373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 113243 113243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 113312 113312 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 113378 113378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold44064 SAMTools SNP 113393 113393 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold44064 SAMTools SNP 113746 113746 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C17%2C16%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 114469 114469 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold44064 SAMTools SNP 114508 114508 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold44064 SAMTools SNP 115017 115017 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44064 SAMTools SNP 115029 115029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44064 SAMTools SNP 115322 115322 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C9%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold44064 SAMTools SNP 115511 115511 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.6%2C0.16%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold44064 SAMTools SNP 115535 115535 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold44064 SAMTools SNP 115559 115559 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44064 SAMTools SNP 115571 115571 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold44064 SAMTools SNP 116293 116293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold44064 SAMTools SNP 116314 116314 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold44064 SAMTools SNP 116347 116347 178 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.38%2C0.48%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold44064 SAMTools SNP 116849 116849 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold44064 SAMTools SNP 118306 118306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold44064 SAMTools SNP 118342 118342 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold44064 SAMTools SNP 118865 118865 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C1%2C16%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0056%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold44064 SAMTools SNP 118973 118973 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44064 SAMTools SNP 119195 119195 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 119481 119481 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 119652 119652 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.041%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold44064 SAMTools SNP 120581 120581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44064 SAMTools SNP 120644 120644 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C78%2C0:99 scaffold44064 SAMTools SNP 121986 121986 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 122620 122620 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold44064 SAMTools SNP 123014 123014 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold44064 SAMTools SNP 130169 130169 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold44064 SAMTools SNP 133858 133858 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C0.29%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold44064 SAMTools SNP 133867 133867 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.036%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold44064 SAMTools SNP 133969 133969 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C125:36 scaffold44064 SAMTools SNP 135361 135361 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold44064 SAMTools SNP 135824 135824 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44064 SAMTools SNP 136360 136360 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 136387 136387 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold44064 SAMTools SNP 137206 137206 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold44064 SAMTools SNP 139924 139924 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 147946 147946 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 150823 150823 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 185366 185366 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 185518 185518 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 187415 187415 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 187440 187440 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C18%2C0:33 scaffold44064 SAMTools SNP 187706 187706 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold44064 SAMTools SNP 187728 187728 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C159:74 scaffold44064 SAMTools SNP 188147 188147 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 188340 188340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 195770 195770 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 195824 195824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 198904 198904 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold44064 SAMTools SNP 198941 198941 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold44064 SAMTools SNP 199062 199062 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D27%3BFQ%3D9.42%3BPV4%3D1%2C1%2C0.42%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold44064 SAMTools SNP 199314 199314 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 199369 199369 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 202258 202258 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44064 SAMTools SNP 204925 204925 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44064 SAMTools SNP 205399 205399 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold44064 SAMTools SNP 205505 205505 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold44064 SAMTools SNP 205534 205534 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 209813 209813 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 209832 209832 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44064 SAMTools SNP 209955 209955 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold44064 SAMTools SNP 210014 210014 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44064 SAMTools SNP 210163 210163 154 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C0.44%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C118:99 scaffold44064 SAMTools SNP 210193 210193 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.36%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold44064 SAMTools SNP 211058 211058 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44064 SAMTools SNP 211094 211094 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C0.22%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold44064 SAMTools SNP 211333 211333 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.28%2C0.0057%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C212:99 scaffold44064 SAMTools SNP 211371 211371 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.3%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold44064 SAMTools SNP 211926 211926 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44064 SAMTools SNP 212543 212543 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold44064 SAMTools SNP 212769 212769 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44064 SAMTools SNP 212809 212809 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.067%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44064 SAMTools SNP 213348 213348 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44064 SAMTools SNP 213502 213502 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.41%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold44064 SAMTools SNP 213550 213550 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold44064 SAMTools SNP 214311 214311 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold44064 SAMTools SNP 214485 214485 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44064 SAMTools SNP 214497 214497 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold44064 SAMTools SNP 214559 214559 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold44064 SAMTools SNP 216320 216320 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 216761 216761 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44064 SAMTools SNP 216791 216791 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold44064 SAMTools SNP 218841 218841 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold44064 SAMTools SNP 218855 218855 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold44064 SAMTools SNP 223719 223719 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 223979 223979 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 224561 224561 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 224622 224622 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44064 SAMTools SNP 226933 226933 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 226999 226999 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C35:38 scaffold44064 SAMTools SNP 227348 227348 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 227873 227873 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold44064 SAMTools SNP 228050 228050 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 229128 229128 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 230367 230367 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44064 SAMTools SNP 230393 230393 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44064 SAMTools SNP 232441 232441 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 232455 232455 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 232494 232494 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 232515 232515 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 233034 233034 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 233100 233100 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 233135 233135 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 233481 233481 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold44064 SAMTools SNP 236741 236741 99.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold44064 SAMTools SNP 239358 239358 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold44064 SAMTools SNP 241203 241203 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold44064 SAMTools SNP 241245 241245 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold44064 SAMTools SNP 241582 241582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C25%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold44064 SAMTools SNP 241597 241597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C20%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold44064 SAMTools SNP 241920 241920 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold44064 SAMTools SNP 241937 241937 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold44064 SAMTools SNP 241939 241939 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold44064 SAMTools SNP 241971 241971 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.012%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C219:81 scaffold44064 SAMTools SNP 242076 242076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 242452 242452 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold44064 SAMTools SNP 242493 242493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44064 SAMTools SNP 242697 242697 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 242702 242702 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C13%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold44064 SAMTools SNP 244450 244450 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 244471 244471 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold44064 SAMTools SNP 244537 244537 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C11%2C28%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.31%2C4.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C85:88 scaffold44064 SAMTools SNP 244555 244555 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D93%3BPV4%3D2.1e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold44064 SAMTools SNP 244564 244564 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C11%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 244600 244600 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C65%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 245105 245105 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 246528 246528 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C57%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold44064 SAMTools SNP 247633 247633 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C8.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold44064 SAMTools SNP 252444 252444 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C12%2C160%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 252609 252609 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D394%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C41%2C77%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 258274 258274 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C94%2C52%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 259183 259183 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold44064 SAMTools SNP 260340 260340 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold44064 SAMTools SNP 260430 260430 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold44064 SAMTools SNP 264265 264265 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D688%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C24%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 264656 264656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D656%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C346%2C0%2C310%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 264717 264717 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44064 SAMTools SNP 265490 265490 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C220:60 scaffold44064 SAMTools SNP 265492 265492 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.9e-05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold44064 SAMTools SNP 265493 265493 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold44064 SAMTools SNP 267980 267980 6.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold44064 SAMTools SNP 268143 268143 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C74:77 scaffold44064 SAMTools SNP 268368 268368 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold44064 SAMTools SNP 269110 269110 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 269809 269809 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 269813 269813 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 270413 270413 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 270444 270444 60.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold44064 SAMTools SNP 270482 270482 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold44064 SAMTools SNP 270968 270968 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 271115 271115 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C30%2C20%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.48%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 271224 271224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 271368 271368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold44064 SAMTools SNP 271722 271722 65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.0043%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold44064 SAMTools SNP 271725 271725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold44064 SAMTools SNP 271776 271776 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.01%2C0.16%2C1%2C4.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C166:99 scaffold44064 SAMTools SNP 271785 271785 166 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C33%2C0:63 scaffold44064 SAMTools SNP 271812 271812 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C29%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C205:99 scaffold44064 SAMTools SNP 272605 272605 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold44064 SAMTools SNP 273545 273545 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44064 SAMTools SNP 274441 274441 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold44064 SAMTools SNP 277002 277002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D809%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C656%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 277022 277022 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D836%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D250%2C55%2C352%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 279873 279873 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 280637 280637 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D866%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C460%2C32%2C72%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.019%2C0.00035%2C1%2C6.3e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold44064 SAMTools SNP 281265 281265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C3%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 281748 281748 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C66%2C0%2C125%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold44064 SAMTools SNP 281780 281780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C45%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold44064 SAMTools SNP 283278 283278 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 283850 283850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44064 SAMTools SNP 283896 283896 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.46%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C245:99 scaffold44064 SAMTools SNP 284518 284518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 284683 284683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 284754 284754 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 286066 286066 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 286633 286633 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.28%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold44064 SAMTools SNP 288106 288106 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44064 SAMTools SNP 288108 288108 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44064 SAMTools SNP 288201 288201 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold44064 SAMTools SNP 288234 288234 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold44064 SAMTools SNP 289751 289751 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold44064 SAMTools SNP 289814 289814 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 289816 289816 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 289838 289838 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C211:99 scaffold44064 SAMTools SNP 289995 289995 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C34%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.55%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold44064 SAMTools SNP 294002 294002 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C35:38 scaffold44064 SAMTools SNP 298023 298023 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44064 SAMTools SNP 300345 300345 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 301157 301157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C47%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold44064 SAMTools SNP 301172 301172 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 303004 303004 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C1%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 303056 303056 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.058%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold44064 SAMTools SNP 303068 303068 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44064 SAMTools SNP 303096 303096 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold44064 SAMTools SNP 303987 303987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C23%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.2e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 304077 304077 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C38%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C229%2C0:99 scaffold44064 SAMTools SNP 307469 307469 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C68%2C4%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 308316 308316 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 308693 308693 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C5.1e-13%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C1%2C0:4 scaffold44064 SAMTools SNP 308771 308771 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C99%2C0:99 scaffold44064 SAMTools SNP 310615 310615 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold44064 SAMTools SNP 310806 310806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold44064 SAMTools SNP 310826 310826 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold44064 SAMTools SNP 311499 311499 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold44064 SAMTools SNP 311674 311674 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44064 SAMTools SNP 311714 311714 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.27%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold44064 SAMTools SNP 331684 331684 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold44064 SAMTools SNP 338719 338719 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold44064 SAMTools SNP 339034 339034 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 340740 340740 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 352232 352232 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44064 SAMTools SNP 390488 390488 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold44064 SAMTools SNP 397524 397524 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold44064 SAMTools SNP 397967 397967 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 399048 399048 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 403838 403838 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold44064 SAMTools SNP 404066 404066 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 404293 404293 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold44064 SAMTools SNP 404305 404305 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold44064 SAMTools SNP 404602 404602 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 410058 410058 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44064 SAMTools SNP 410914 410914 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold44064 SAMTools SNP 410977 410977 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C64:67 scaffold44064 SAMTools SNP 411003 411003 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44064 SAMTools SNP 411389 411389 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold44064 SAMTools SNP 411428 411428 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C21%2C0:39 scaffold44064 SAMTools SNP 413481 413481 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.042%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44064 SAMTools SNP 413483 413483 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44064 SAMTools SNP 414115 414115 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold44064 SAMTools SNP 415064 415064 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 415078 415078 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 415295 415295 136 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C47%2C35%2C163%2C0%2C160:21 scaffold44064 SAMTools SNP 415529 415529 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold44064 SAMTools SNP 425705 425705 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C50%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 425741 425741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C17%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 425789 425789 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C1%2C13%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold44064 SAMTools SNP 425892 425892 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 425899 425899 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 425928 425928 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 425968 425968 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 426288 426288 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 426479 426479 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44064 SAMTools SNP 426509 426509 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C32:35 scaffold44064 SAMTools SNP 426523 426523 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold44064 SAMTools SNP 426575 426575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44064 SAMTools SNP 426935 426935 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44064 SAMTools SNP 427342 427342 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 427631 427631 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold44064 SAMTools SNP 427655 427655 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C0.43%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold44064 SAMTools SNP 429002 429002 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold44064 SAMTools SNP 429032 429032 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C1%2C37%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.55%2C5e-07%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold44064 SAMTools SNP 429057 429057 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C77%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 429940 429940 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C6%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.00016%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold44064 SAMTools SNP 429984 429984 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C67%2C80%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1e-06%2C5.3e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C153:99 scaffold44064 SAMTools SNP 430039 430039 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C59%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold44064 SAMTools SNP 431639 431639 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C2%2C5%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 431797 431797 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C22%2C0%2C20%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D3.4e-05%2C3.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold44064 SAMTools SNP 432142 432142 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold44064 SAMTools SNP 432343 432343 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C18%2C80%2C23%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.6%2C8.3e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold44064 SAMTools SNP 432490 432490 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C36%2C131%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C2.4e-229%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 433971 433971 56.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold44064 SAMTools SNP 434019 434019 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C255%2C0:99 scaffold44064 SAMTools SNP 434088 434088 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C72%2C0:99 scaffold44064 SAMTools SNP 434154 434154 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C75%2C0:99 scaffold44064 SAMTools SNP 434428 434428 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 434445 434445 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 435437 435437 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 435452 435452 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C248:99 scaffold44064 SAMTools SNP 435461 435461 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold44064 SAMTools SNP 435798 435798 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1.6e-07%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold44064 SAMTools SNP 435930 435930 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C255%2C0:99 scaffold44064 SAMTools SNP 436888 436888 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 436895 436895 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 436984 436984 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold44064 SAMTools SNP 438540 438540 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold44064 SAMTools SNP 439700 439700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold44064 SAMTools SNP 439706 439706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold44064 SAMTools SNP 440043 440043 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44064 SAMTools SNP 440052 440052 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44064 SAMTools SNP 446979 446979 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C313%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44064 SAMTools SNP 447264 447264 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C25%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C169%2C0:99 scaffold44064 SAMTools SNP 448152 448152 227 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C4%2C25%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold44064 SAMTools SNP 448211 448211 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44064 SAMTools SNP 448462 448462 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C50%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 449175 449175 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C78%2C1%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C6.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 449632 449632 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C36%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold44064 SAMTools SNP 449778 449778 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C30%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 450062 450062 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C48%2C19%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 450121 450121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C39%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold44064 SAMTools SNP 450130 450130 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C38%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold44064 SAMTools SNP 450205 450205 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.36%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C54:57 scaffold44064 SAMTools SNP 450551 450551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44064 SAMTools SNP 450602 450602 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 450668 450668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C54%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C2.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 451202 451202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C15%2C42%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C5.2e-10%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 451406 451406 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C2%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 451465 451465 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold44064 SAMTools SNP 451905 451905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 451915 451915 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C8%2C30%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 451921 451921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C32%2C68%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-05%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 452246 452246 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C10%2C80%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1.4e-05%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 452273 452273 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C10%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 452677 452677 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C29%2C37%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-09%2C2.2e-15%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 452688 452688 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C10%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-11%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 452710 452710 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-10%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 453079 453079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C37%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-05%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 453082 453082 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C28%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00066%2C1%2C1%2C1.3e-48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44064 SAMTools SNP 453124 453124 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C2%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.31%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold44064 SAMTools SNP 453560 453560 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold44064 SAMTools SNP 453568 453568 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold44064 SAMTools SNP 453786 453786 17.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold44064 SAMTools SNP 453880 453880 42.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold44064 SAMTools SNP 454467 454467 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C242:33 scaffold44064 SAMTools SNP 454500 454500 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.0083%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C205:33 scaffold44064 SAMTools SNP 454526 454526 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C39%2C0:75 scaffold44064 SAMTools SNP 454565 454565 18.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.12%2C4.5e-14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C1%2C0:4 scaffold44064 SAMTools SNP 454829 454829 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44064 SAMTools SNP 454989 454989 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 455001 455001 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold44064 SAMTools SNP 455010 455010 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.048%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold44064 SAMTools SNP 456131 456131 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44064 SAMTools SNP 456354 456354 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 456510 456510 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold44064 SAMTools SNP 456591 456591 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44064 SAMTools SNP 456790 456790 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold44064 SAMTools SNP 457058 457058 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C20%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.52%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold44064 SAMTools SNP 457128 457128 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold44064 SAMTools SNP 457362 457362 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.017%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold44064 SAMTools SNP 457434 457434 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44064 SAMTools SNP 457635 457635 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C251:73 scaffold44064 SAMTools SNP 458151 458151 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44064 SAMTools SNP 458202 458202 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 458219 458219 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 458736 458736 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold44064 SAMTools SNP 461364 461364 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold44064 SAMTools SNP 462243 462243 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D36.2%3BPV4%3D1%2C5.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C71:66 scaffold44064 SAMTools SNP 467010 467010 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44064 SAMTools SNP 467892 467892 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.028%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold44064 SAMTools SNP 467990 467990 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0062%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold44064 SAMTools SNP 468308 468308 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold44064 SAMTools SNP 468421 468421 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0027%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold44064 SAMTools SNP 476414 476414 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44064 SAMTools SNP 476432 476432 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44098 SAMTools SNP 4201 4201 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C6.2e-21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C221:53 scaffold44098 SAMTools SNP 5291 5291 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold44098 SAMTools SNP 5669 5669 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.67%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold44098 SAMTools SNP 5867 5867 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.0019%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 5960 5960 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.026%2C0.012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold44098 SAMTools SNP 5966 5966 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.021%2C0.023%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold44098 SAMTools SNP 6225 6225 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.22%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold44098 SAMTools SNP 6431 6431 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.12%2C0.2%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold44098 SAMTools SNP 6485 6485 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C114%2C0:99 scaffold44098 SAMTools SNP 6577 6577 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C17%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold44098 SAMTools SNP 6638 6638 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold44098 SAMTools SNP 9590 9590 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold44098 SAMTools SNP 10721 10721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.026%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 10744 10744 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 29446 29446 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold44098 SAMTools SNP 32243 32243 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold44098 SAMTools SNP 32966 32966 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C36:39 scaffold44098 SAMTools SNP 32981 32981 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44098 SAMTools SNP 33237 33237 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold44098 SAMTools SNP 34759 34759 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold44098 SAMTools SNP 34763 34763 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold44098 SAMTools SNP 35350 35350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold44098 SAMTools SNP 35737 35737 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44098 SAMTools SNP 35797 35797 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44098 SAMTools SNP 36273 36273 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 36604 36604 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 36770 36770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.016%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 39068 39068 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.36%2C0.016%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C138:99 scaffold44098 SAMTools SNP 39077 39077 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.04%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C185:62 scaffold44098 SAMTools SNP 39080 39080 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44098 SAMTools SNP 39090 39090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44098 SAMTools SNP 39531 39531 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 39961 39961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold44098 SAMTools SNP 40029 40029 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 40668 40668 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold44098 SAMTools SNP 41092 41092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold44098 SAMTools SNP 41182 41182 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00017%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold44098 SAMTools SNP 41344 41344 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 41393 41393 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C242:99 scaffold44098 SAMTools SNP 41406 41406 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold44098 SAMTools SNP 41799 41799 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C46%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 42503 42503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 42662 42662 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C27%2C0:51 scaffold44098 SAMTools SNP 42920 42920 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.08%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold44098 SAMTools SNP 42923 42923 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold44098 SAMTools SNP 43426 43426 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold44098 SAMTools SNP 43597 43597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold44098 SAMTools SNP 44404 44404 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold44098 SAMTools SNP 44575 44575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44098 SAMTools SNP 44615 44615 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C6%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.23%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold44098 SAMTools SNP 44975 44975 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold44098 SAMTools SNP 45255 45255 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C169:99 scaffold44098 SAMTools SNP 45300 45300 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold44098 SAMTools SNP 45718 45718 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44098 SAMTools SNP 45777 45777 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold44098 SAMTools SNP 45801 45801 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold44098 SAMTools SNP 46160 46160 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold44098 SAMTools SNP 46172 46172 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44098 SAMTools SNP 49590 49590 53.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold44098 SAMTools SNP 96044 96044 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.58%2C4.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold44098 SAMTools SNP 96374 96374 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.17%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold44098 SAMTools SNP 96527 96527 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C8.4e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C221:99 scaffold44098 SAMTools SNP 96632 96632 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.66%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold44098 SAMTools SNP 97001 97001 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold44098 SAMTools SNP 97019 97019 36.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold44098 SAMTools SNP 114812 114812 53.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold44098 SAMTools SNP 115542 115542 28.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold44098 SAMTools SNP 115825 115825 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 116108 116108 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C220:99 scaffold44098 SAMTools SNP 116120 116120 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C187:52 scaffold44098 SAMTools SNP 116137 116137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44098 SAMTools SNP 116637 116637 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C47%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold44098 SAMTools SNP 118617 118617 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44098 SAMTools SNP 118644 118644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C8%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.00058%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 120956 120956 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold44098 SAMTools SNP 122140 122140 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.36%2C0.41%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold44098 SAMTools SNP 122197 122197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold44098 SAMTools SNP 122239 122239 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold44098 SAMTools SNP 124702 124702 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold44098 SAMTools SNP 124734 124734 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.016%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44098 SAMTools SNP 125966 125966 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C65:68 scaffold44098 SAMTools SNP 126092 126092 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 126101 126101 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C27%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.092%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 128319 128319 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C7%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.7%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold44098 SAMTools SNP 135554 135554 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C20%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold44098 SAMTools SNP 138037 138037 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C109%2C0%2C56%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.55%2C1.1e-12%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold44098 SAMTools SNP 138053 138053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C1%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 139177 139177 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold44098 SAMTools SNP 140553 140553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 140573 140573 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 142989 142989 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold44098 SAMTools SNP 143189 143189 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold44098 SAMTools SNP 143297 143297 41.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold44098 SAMTools SNP 148850 148850 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C36%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 149726 149726 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 150322 150322 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 150766 150766 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.13%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold44098 SAMTools SNP 163480 163480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 165732 165732 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold44098 SAMTools SNP 165750 165750 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold44098 SAMTools SNP 165762 165762 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold44098 SAMTools SNP 165768 165768 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold44098 SAMTools SNP 166317 166317 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold44098 SAMTools SNP 166351 166351 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.24%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold44098 SAMTools SNP 166367 166367 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C0.15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C210:46 scaffold44098 SAMTools SNP 166742 166742 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold44098 SAMTools SNP 166747 166747 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.0023%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold44098 SAMTools SNP 166759 166759 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold44098 SAMTools SNP 167144 167144 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold44098 SAMTools SNP 173634 173634 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold44098 SAMTools SNP 174241 174241 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.59%2C0.2%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold44098 SAMTools SNP 174259 174259 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44098 SAMTools SNP 174596 174596 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C156:99 scaffold44098 SAMTools SNP 175174 175174 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold44098 SAMTools SNP 175207 175207 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold44098 SAMTools SNP 175372 175372 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold44098 SAMTools SNP 176055 176055 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44098 SAMTools SNP 176631 176631 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold44098 SAMTools SNP 176636 176636 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C220:72 scaffold44098 SAMTools SNP 232903 232903 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 233641 233641 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C2%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.44%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold44098 SAMTools SNP 235870 235870 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C30%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold44098 SAMTools SNP 239421 239421 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold44098 SAMTools SNP 239423 239423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold44098 SAMTools SNP 239474 239474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold44098 SAMTools SNP 240125 240125 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.15%2C9.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold44098 SAMTools SNP 241409 241409 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 242126 242126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C23%2C38%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold44098 SAMTools SNP 244015 244015 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C178%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C255%2C0:99 scaffold44098 SAMTools SNP 244152 244152 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold44098 SAMTools SNP 244266 244266 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C135%2C0:99 scaffold44098 SAMTools SNP 245007 245007 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold44098 SAMTools SNP 245067 245067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C107%2C92%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0027%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44098 SAMTools SNP 245681 245681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C57%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold44098 SAMTools SNP 246943 246943 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold44098 SAMTools SNP 246946 246946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold44098 SAMTools SNP 247381 247381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C4%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 248004 248004 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold44098 SAMTools SNP 248058 248058 11.3 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C148%3BMQ%3D50%3BFQ%3D-71;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C211%2C255%2C0%2C228:52 scaffold44098 SAMTools SNP 249405 249405 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C129%2C31%2C11%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold44098 SAMTools SNP 249868 249868 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C139%2C36%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D5.7e-11%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold44098 SAMTools SNP 256539 256539 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold44098 SAMTools SNP 259589 259589 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold44098 SAMTools SNP 260117 260117 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 260644 260644 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.34%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold44098 SAMTools SNP 260753 260753 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold44098 SAMTools SNP 261766 261766 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold44098 SAMTools SNP 262111 262111 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C26%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.005%2C2e-05%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold44098 SAMTools SNP 262127 262127 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.068%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold44098 SAMTools SNP 262151 262151 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold44098 SAMTools SNP 262172 262172 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C22%2C7%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1.9e-10%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold44098 SAMTools SNP 262899 262899 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold44098 SAMTools SNP 265447 265447 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44098 SAMTools SNP 266979 266979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold44098 SAMTools SNP 269374 269374 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold44098 SAMTools SNP 271175 271175 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44098 SAMTools SNP 271827 271827 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 271857 271857 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 271860 271860 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 302172 302172 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold44098 SAMTools SNP 303875 303875 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.2e-08%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C136:34 scaffold44098 SAMTools SNP 304018 304018 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold44098 SAMTools SNP 308005 308005 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold44098 SAMTools SNP 308340 308340 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 308403 308403 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C37%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 308850 308850 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 312890 312890 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C75%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 312935 312935 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C56%2C11%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.016%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold44098 SAMTools SNP 312972 312972 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C70%2C4%2C13%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.77%2C2.1e-15%2C1%2C5.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold44098 SAMTools SNP 312986 312986 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C74%2C0%2C16%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.011%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold44098 SAMTools SNP 313692 313692 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C22%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C26%2C0:49 scaffold44098 SAMTools SNP 316811 316811 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C0.04%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 316955 316955 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold44098 SAMTools SNP 320245 320245 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold44098 SAMTools SNP 320444 320444 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C71%2C0%2C30%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold44098 SAMTools SNP 320464 320464 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C66%2C0%2C27%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C3.3e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C254:99 scaffold44098 SAMTools SNP 322578 322578 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold44098 SAMTools SNP 323139 323139 157 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.36%2C0.26%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C157:99 scaffold44098 SAMTools SNP 323946 323946 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.22%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold44098 SAMTools SNP 323984 323984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold44098 SAMTools SNP 324463 324463 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold44098 SAMTools SNP 325232 325232 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold44098 SAMTools SNP 325295 325295 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold44098 SAMTools SNP 325386 325386 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0061%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold44098 SAMTools SNP 325620 325620 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44098 SAMTools SNP 326107 326107 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C151:96 scaffold44098 SAMTools SNP 326108 326108 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C153:99 scaffold44098 SAMTools SNP 326712 326712 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold44098 SAMTools SNP 326716 326716 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold44098 SAMTools SNP 326771 326771 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold44098 SAMTools SNP 327219 327219 198 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.094%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold44098 SAMTools SNP 327237 327237 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold44098 SAMTools SNP 328564 328564 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold44098 SAMTools SNP 328570 328570 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold44098 SAMTools SNP 328590 328590 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.6e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold44098 SAMTools SNP 329061 329061 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold44098 SAMTools SNP 329302 329302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 330280 330280 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold44098 SAMTools SNP 336292 336292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 337252 337252 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.38%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold44098 SAMTools SNP 337731 337731 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold44098 SAMTools SNP 337900 337900 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C0.0049%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold44098 SAMTools SNP 338319 338319 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C107:99 scaffold44098 SAMTools SNP 338331 338331 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold44098 SAMTools SNP 339203 339203 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold44098 SAMTools SNP 346078 346078 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold44098 SAMTools SNP 346465 346465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold44098 SAMTools SNP 346731 346731 8.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold44098 SAMTools SNP 347068 347068 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold44098 SAMTools SNP 347158 347158 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold44098 SAMTools SNP 347698 347698 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold44098 SAMTools SNP 348076 348076 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold44098 SAMTools SNP 348109 348109 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold44098 SAMTools SNP 348640 348640 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold44098 SAMTools SNP 372053 372053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 375955 375955 71.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C15%2C0:27 scaffold44098 SAMTools SNP 378022 378022 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold44098 SAMTools SNP 379851 379851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold44098 SAMTools SNP 381884 381884 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C16%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.044%2C1%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold44098 SAMTools SNP 382423 382423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold44098 SAMTools SNP 382456 382456 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold44098 SAMTools SNP 382883 382883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold44098 SAMTools SNP 388974 388974 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 388984 388984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 389028 389028 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold44098 SAMTools SNP 389202 389202 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold44098 SAMTools SNP 390346 390346 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold44098 SAMTools SNP 390355 390355 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 390407 390407 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44098 SAMTools SNP 394132 394132 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C87:90 scaffold44098 SAMTools SNP 394145 394145 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.21%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C223:87 scaffold44098 SAMTools SNP 394148 394148 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C216:99 scaffold44098 SAMTools SNP 395430 395430 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.029%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold44098 SAMTools SNP 399805 399805 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold44098 SAMTools SNP 400072 400072 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold44098 SAMTools SNP 400102 400102 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold44098 SAMTools SNP 400173 400173 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold44098 SAMTools SNP 401460 401460 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold44098 SAMTools SNP 401814 401814 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C97:99 scaffold44098 SAMTools SNP 401832 401832 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C176:52 scaffold44098 SAMTools SNP 401859 401859 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold44098 SAMTools SNP 403087 403087 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 403280 403280 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44098 SAMTools SNP 404465 404465 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44098 SAMTools SNP 404474 404474 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold44098 SAMTools SNP 404819 404819 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold44098 SAMTools SNP 405009 405009 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold44098 SAMTools SNP 407763 407763 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 407773 407773 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold44098 SAMTools SNP 407779 407779 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold44098 SAMTools SNP 408617 408617 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C247:99 scaffold44098 SAMTools SNP 409285 409285 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 409722 409722 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold44098 SAMTools SNP 409779 409779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44098 SAMTools SNP 410403 410403 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 410584 410584 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 419921 419921 4.85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.0003%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C5%2C0:5 scaffold44098 SAMTools SNP 421055 421055 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold44098 SAMTools SNP 421418 421418 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 421482 421482 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold44098 SAMTools SNP 421894 421894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold44098 SAMTools SNP 424164 424164 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 424180 424180 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 428045 428045 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold44098 SAMTools SNP 428129 428129 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 428705 428705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C4%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold44098 SAMTools SNP 428716 428716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 429048 429048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 431356 431356 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 431977 431977 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.25%2C4.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C176:99 scaffold44098 SAMTools SNP 432788 432788 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 432800 432800 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 433148 433148 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold44098 SAMTools SNP 433154 433154 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold44098 SAMTools SNP 433473 433473 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 433474 433474 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 433551 433551 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C2%2C24%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1.4e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold44098 SAMTools SNP 433603 433603 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold44098 SAMTools SNP 434811 434811 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold44098 SAMTools SNP 434844 434844 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold44098 SAMTools SNP 434874 434874 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold44098 SAMTools SNP 435842 435842 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 435926 435926 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold44098 SAMTools SNP 437093 437093 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold44098 SAMTools SNP 437218 437218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold44098 SAMTools SNP 441705 441705 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0042%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.46%2C0.0099%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold44098 SAMTools SNP 442036 442036 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold44098 SAMTools SNP 442432 442432 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.019%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold44098 SAMTools SNP 442453 442453 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C9.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C214:99 scaffold44098 SAMTools SNP 442486 442486 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 442705 442705 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.45%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold44098 SAMTools SNP 442995 442995 157 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.27%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold44098 SAMTools SNP 443049 443049 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold44098 SAMTools SNP 444463 444463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 444491 444491 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.55%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold44098 SAMTools SNP 444499 444499 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C0.028%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold44098 SAMTools SNP 444925 444925 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold44098 SAMTools SNP 444932 444932 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold44098 SAMTools SNP 445019 445019 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 445031 445031 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold44098 SAMTools SNP 445962 445962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 446161 446161 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold44098 SAMTools SNP 446191 446191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 446797 446797 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C12%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.22%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold44098 SAMTools SNP 446857 446857 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C230:98 scaffold44098 SAMTools SNP 447799 447799 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.55%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold44098 SAMTools SNP 448053 448053 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.28%2C0.00016%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold44098 SAMTools SNP 448123 448123 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold44098 SAMTools SNP 448217 448217 28.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold44098 SAMTools SNP 448267 448267 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold44098 SAMTools SNP 451736 451736 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D136%2C19%2C61%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.0023%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold44098 SAMTools SNP 451754 451754 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C29%2C55%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0053%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold44098 SAMTools SNP 451760 451760 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C13%2C104%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 452168 452168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C26%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1.6e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 452188 452188 48.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold44098 SAMTools SNP 454458 454458 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold44098 SAMTools SNP 461994 461994 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold44098 SAMTools SNP 467478 467478 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.27%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C139:43 scaffold44098 SAMTools SNP 467763 467763 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C21%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.57%2C1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold44098 SAMTools SNP 478575 478575 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold44098 SAMTools SNP 482157 482157 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold44098 SAMTools SNP 486684 486684 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold44098 SAMTools SNP 486719 486719 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold44098 SAMTools SNP 487599 487599 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold44098 SAMTools SNP 488931 488931 74.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold44098 SAMTools SNP 489770 489770 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 491851 491851 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C15%2C0:27 scaffold44098 SAMTools SNP 491927 491927 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold44098 SAMTools SNP 492099 492099 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 492852 492852 31.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold44098 SAMTools SNP 492940 492940 29.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold44098 SAMTools SNP 494089 494089 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C3%3BMQ%3D48%3BFQ%3D119%3BPV4%3D0.27%2C0.23%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C146:99 scaffold44098 SAMTools SNP 494176 494176 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold44098 SAMTools SNP 515027 515027 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold44098 SAMTools SNP 515090 515090 27.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold44098 SAMTools SNP 515426 515426 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold44098 SAMTools SNP 515477 515477 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.31%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold44098 SAMTools SNP 515905 515905 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold44098 SAMTools SNP 515953 515953 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C4.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C99:47 scaffold441 SAMTools SNP 43 43 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold441 SAMTools SNP 210 210 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold441 SAMTools SNP 211 211 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold441 SAMTools SNP 22117 22117 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold441 SAMTools SNP 22331 22331 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold442 SAMTools SNP 86 86 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold442 SAMTools SNP 87 87 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold442 SAMTools SNP 2110 2110 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold442 SAMTools SNP 2124 2124 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold442 SAMTools SNP 70426 70426 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold442 SAMTools SNP 70702 70702 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold442 SAMTools SNP 71659 71659 24.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold442 SAMTools SNP 79918 79918 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C112:30 scaffold442 SAMTools SNP 80548 80548 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C80:39 scaffold443 SAMTools SNP 19973 19973 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold443 SAMTools SNP 41523 41523 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold443 SAMTools SNP 55802 55802 50.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold443 SAMTools SNP 125182 125182 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold443 SAMTools SNP 132960 132960 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 134312 134312 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold443 SAMTools SNP 134342 134342 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C51%2C4%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00094%2C0.051%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 134606 134606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold443 SAMTools SNP 159656 159656 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 159657 159657 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold443 SAMTools SNP 215633 215633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 219903 219903 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C320%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold443 SAMTools SNP 222094 222094 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold443 SAMTools SNP 222181 222181 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold443 SAMTools SNP 223574 223574 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C51%2C0%2C10%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold443 SAMTools SNP 226068 226068 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold443 SAMTools SNP 227696 227696 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C6%2C7%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.73%2C7.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold443 SAMTools SNP 227702 227702 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold443 SAMTools SNP 227711 227711 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 228435 228435 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold443 SAMTools SNP 229196 229196 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C36%2C0:69 scaffold443 SAMTools SNP 229229 229229 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C17%2C17%3BMQ%3D37%3BFQ%3D-48%3BPV4%3D0.03%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold443 SAMTools SNP 229584 229584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C6%2C20%2C14%3BMQ%3D40%3BFQ%3D-6.96%3BPV4%3D0.045%2C0.023%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold443 SAMTools SNP 229623 229623 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C3.1e-05%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C221:48 scaffold443 SAMTools SNP 229653 229653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold443 SAMTools SNP 229713 229713 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C37%2C2%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold443 SAMTools SNP 230129 230129 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold443 SAMTools SNP 230514 230514 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 231346 231346 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold443 SAMTools SNP 231821 231821 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C12%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold443 SAMTools SNP 233927 233927 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold443 SAMTools SNP 243918 243918 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold443 SAMTools SNP 244928 244928 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold443 SAMTools SNP 245128 245128 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold443 SAMTools SNP 245559 245559 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold443 SAMTools SNP 245654 245654 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold443 SAMTools SNP 250074 250074 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 251216 251216 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 251223 251223 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 251869 251869 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 251925 251925 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 259408 259408 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 260176 260176 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 295044 295044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.089%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 295064 295064 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C244:99 scaffold443 SAMTools SNP 295396 295396 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold443 SAMTools SNP 295594 295594 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C7%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C2.2e-17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold443 SAMTools SNP 295771 295771 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.0047%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold443 SAMTools SNP 296587 296587 104 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C45%2C0%2C122%2C18%2C119:87 scaffold443 SAMTools SNP 296872 296872 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C42%2C0:81 scaffold443 SAMTools SNP 297235 297235 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.37%2C2.6e-25%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C242:69 scaffold443 SAMTools SNP 297340 297340 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.0037%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold443 SAMTools SNP 300138 300138 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C17%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.34%2C1%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold443 SAMTools SNP 300177 300177 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 301222 301222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold443 SAMTools SNP 301837 301837 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.15%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C156:88 scaffold443 SAMTools SNP 301858 301858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold443 SAMTools SNP 303100 303100 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold443 SAMTools SNP 303108 303108 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold443 SAMTools SNP 305795 305795 26.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold443 SAMTools SNP 305898 305898 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold443 SAMTools SNP 306868 306868 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 308049 308049 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C36%2C0:69 scaffold443 SAMTools SNP 308079 308079 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold443 SAMTools SNP 308094 308094 71.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold443 SAMTools SNP 308190 308190 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold443 SAMTools SNP 309120 309120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold443 SAMTools SNP 309504 309504 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold443 SAMTools SNP 309511 309511 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold443 SAMTools SNP 309856 309856 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C14%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.25%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 310236 310236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold443 SAMTools SNP 310809 310809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 310850 310850 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.00043%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold443 SAMTools SNP 310876 310876 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.04%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold443 SAMTools SNP 311048 311048 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold443 SAMTools SNP 311075 311075 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold443 SAMTools SNP 311079 311079 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold443 SAMTools SNP 311084 311084 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C32:35 scaffold443 SAMTools SNP 311270 311270 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold443 SAMTools SNP 311608 311608 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C27%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold443 SAMTools SNP 313206 313206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C60%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold443 SAMTools SNP 313263 313263 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C127:77 scaffold443 SAMTools SNP 313264 313264 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C100:40 scaffold443 SAMTools SNP 313498 313498 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold443 SAMTools SNP 314281 314281 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C3%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold443 SAMTools SNP 314344 314344 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 320512 320512 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C62%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1.3e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 322121 322121 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D141%3BPV4%3D5.7e-06%2C0.014%2C1%2C8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold443 SAMTools SNP 322846 322846 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C45%2C16%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C4.6e-07%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 322909 322909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C15%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 322912 322912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C15%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D6.8e-06%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold443 SAMTools SNP 323123 323123 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold443 SAMTools SNP 323124 323124 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold443 SAMTools SNP 323151 323151 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.0071%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold443 SAMTools SNP 323186 323186 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold443 SAMTools SNP 323372 323372 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold443 SAMTools SNP 323395 323395 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C3%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold443 SAMTools SNP 323463 323463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C27%2C21%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00062%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold443 SAMTools SNP 323553 323553 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold443 SAMTools SNP 323728 323728 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C13%2C33%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold443 SAMTools SNP 323905 323905 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.2e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C190:40 scaffold443 SAMTools SNP 324643 324643 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold443 SAMTools SNP 324660 324660 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold443 SAMTools SNP 328421 328421 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C0%3BMQ%3D49%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C227:99 scaffold443 SAMTools SNP 328422 328422 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold443 SAMTools SNP 328766 328766 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 330831 330831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold443 SAMTools SNP 331005 331005 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C35%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 331174 331174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold443 SAMTools SNP 332359 332359 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold443 SAMTools SNP 332423 332423 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C142:99 scaffold443 SAMTools SNP 335588 335588 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold443 SAMTools SNP 335635 335635 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 335648 335648 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 336048 336048 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold443 SAMTools SNP 336076 336076 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold443 SAMTools SNP 336087 336087 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold443 SAMTools SNP 338011 338011 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold443 SAMTools SNP 338014 338014 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C152:36 scaffold443 SAMTools SNP 338064 338064 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold443 SAMTools SNP 338352 338352 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C21%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D5.3e-05%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold443 SAMTools SNP 338482 338482 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C48%2C91%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 338497 338497 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C1%2C107%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.25%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 339332 339332 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 339771 339771 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C42%2C0:81 scaffold443 SAMTools SNP 340015 340015 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C17%2C15%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.057%2C5.8e-47%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold443 SAMTools SNP 340206 340206 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C44%2C65%3BMQ%3D50%3BFQ%3D-265%3BPV4%3D0.28%2C3.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C238%2C0:99 scaffold443 SAMTools SNP 342582 342582 4.21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C6%2C6%3BMQ%3D18%3BFQ%3D-45%3BPV4%3D1%2C2.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C18%2C0:17 scaffold443 SAMTools SNP 345828 345828 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D49%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold443 SAMTools SNP 345844 345844 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold443 SAMTools SNP 345868 345868 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold443 SAMTools SNP 345897 345897 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold443 SAMTools SNP 345906 345906 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold443 SAMTools SNP 346631 346631 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C17:20 scaffold443 SAMTools SNP 346655 346655 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D48%3BFQ%3D60%3BPV4%3D1%2C0.46%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold443 SAMTools SNP 346656 346656 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C159:74 scaffold443 SAMTools SNP 346685 346685 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold443 SAMTools SNP 346691 346691 71.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C15%2C0:27 scaffold443 SAMTools SNP 347258 347258 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold443 SAMTools SNP 347705 347705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold443 SAMTools SNP 347823 347823 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold443 SAMTools SNP 347996 347996 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold443 SAMTools SNP 350041 350041 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold443 SAMTools SNP 352276 352276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 354413 354413 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 355577 355577 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C245:99 scaffold443 SAMTools SNP 359440 359440 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold443 SAMTools SNP 362908 362908 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold443 SAMTools SNP 402474 402474 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold443 SAMTools SNP 402556 402556 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 402568 402568 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 402823 402823 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 403559 403559 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold443 SAMTools SNP 405300 405300 27.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold443 SAMTools SNP 405406 405406 50.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold443 SAMTools SNP 405432 405432 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold443 SAMTools SNP 406077 406077 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 406092 406092 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 430106 430106 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold443 SAMTools SNP 430480 430480 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold443 SAMTools SNP 430504 430504 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold443 SAMTools SNP 430658 430658 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C63%2C0:99 scaffold443 SAMTools SNP 436305 436305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold443 SAMTools SNP 436433 436433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold443 SAMTools SNP 436751 436751 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold443 SAMTools SNP 440532 440532 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 440971 440971 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 440990 440990 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 449542 449542 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 471609 471609 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold443 SAMTools SNP 492490 492490 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold443 SAMTools SNP 492711 492711 33.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold443 SAMTools SNP 512527 512527 18.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold443 SAMTools SNP 512740 512740 55.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold443 SAMTools SNP 526955 526955 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.49%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C156:34 scaffold443 SAMTools SNP 542825 542825 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 545420 545420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 545437 545437 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 548676 548676 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C4.6e-40%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 548691 548691 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C16%2C25%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.12%2C7e-52%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold443 SAMTools SNP 573705 573705 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold443 SAMTools SNP 573709 573709 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold443 SAMTools SNP 573776 573776 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.28%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold443 SAMTools SNP 573799 573799 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold443 SAMTools SNP 576478 576478 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold443 SAMTools SNP 587032 587032 6.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C1%2C0:4 scaffold443 SAMTools SNP 603672 603672 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C36%2C0:69 scaffold443 SAMTools SNP 604553 604553 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold443 SAMTools SNP 606807 606807 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold443 SAMTools SNP 606844 606844 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C0%2C0:3 scaffold443 SAMTools SNP 607594 607594 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold443 SAMTools SNP 642486 642486 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 642503 642503 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold443 SAMTools SNP 642573 642573 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold443 SAMTools SNP 642958 642958 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 643659 643659 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold443 SAMTools SNP 643700 643700 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold443 SAMTools SNP 644267 644267 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 644271 644271 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 644472 644472 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 647054 647054 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D0.2%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold443 SAMTools SNP 647160 647160 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C39%2C0:75 scaffold443 SAMTools SNP 647253 647253 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.23%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C11:14 scaffold443 SAMTools SNP 647321 647321 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.074%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold443 SAMTools SNP 647606 647606 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.22%2C0.035%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold443 SAMTools SNP 647653 647653 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold443 SAMTools SNP 649095 649095 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold443 SAMTools SNP 649098 649098 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.41%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 649284 649284 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.028%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold443 SAMTools SNP 650864 650864 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold443 SAMTools SNP 650875 650875 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold443 SAMTools SNP 650894 650894 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.45%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 651100 651100 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold443 SAMTools SNP 651106 651106 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.19%2C0.016%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C227:99 scaffold443 SAMTools SNP 651117 651117 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.54%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold443 SAMTools SNP 651977 651977 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C30%2C0:57 scaffold443 SAMTools SNP 652641 652641 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold443 SAMTools SNP 652643 652643 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold443 SAMTools SNP 652867 652867 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold443 SAMTools SNP 652879 652879 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.28%2C0.082%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold443 SAMTools SNP 652884 652884 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.53%2C0.27%2C1%2C7.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold443 SAMTools SNP 653166 653166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.41%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 653211 653211 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 653325 653325 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold443 SAMTools SNP 653349 653349 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.13%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold443 SAMTools SNP 653897 653897 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C36%2C11%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0017%2C6.9e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold443 SAMTools SNP 654779 654779 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold443 SAMTools SNP 654826 654826 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 685667 685667 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 689044 689044 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold443 SAMTools SNP 689493 689493 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold443 SAMTools SNP 690082 690082 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0109%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold443 SAMTools SNP 690113 690113 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold443 SAMTools SNP 692547 692547 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold443 SAMTools SNP 693290 693290 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C9%2C7%3BMQ%3D49%3BFQ%3D53%3BPV4%3D1%2C1.9e-45%2C0.083%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold443 SAMTools SNP 693915 693915 4.45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C12%2C0:11 scaffold443 SAMTools SNP 694806 694806 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold443 SAMTools SNP 698506 698506 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold443 SAMTools SNP 700341 700341 14.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C7:10 scaffold443 SAMTools SNP 705087 705087 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold443 SAMTools SNP 719775 719775 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C2%2C89%3BMQ%3D37%3BFQ%3D-205%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold443 SAMTools SNP 720928 720928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 721274 721274 79.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold443 SAMTools SNP 722038 722038 98.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold443 SAMTools SNP 722089 722089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D37%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold443 SAMTools SNP 722104 722104 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C8%2C0%3BMQ%3D34%3BFQ%3D75%3BPV4%3D0.31%2C0.12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold443 SAMTools SNP 722484 722484 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C23%3BMQ%3D40%3BFQ%3D127%3BPV4%3D2.6e-05%2C1.3e-13%2C0.00016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold443 SAMTools SNP 722493 722493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D44%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold443 SAMTools SNP 723121 723121 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C6%3BMQ%3D44%3BFQ%3D99%3BPV4%3D0.14%2C0.15%2C0.37%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold443 SAMTools SNP 723124 723124 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C0%3BMQ%3D43%3BFQ%3D106%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold443 SAMTools SNP 723541 723541 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D43%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C48%2C0:93 scaffold443 SAMTools SNP 723580 723580 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D39%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.038%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C155:34 scaffold443 SAMTools SNP 742930 742930 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold443 SAMTools SNP 750541 750541 42.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold443 SAMTools SNP 760518 760518 90.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D0.4%2C0.34%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C8%2C0:14 scaffold443 SAMTools SNP 760581 760581 63.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold443 SAMTools SNP 761249 761249 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.32%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold443 SAMTools SNP 765182 765182 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold443 SAMTools SNP 766941 766941 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 767514 767514 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold443 SAMTools SNP 768443 768443 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.62%2C5.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold443 SAMTools SNP 768576 768576 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C19%2C10%2C8%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C5.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold443 SAMTools SNP 768716 768716 24.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold443 SAMTools SNP 768807 768807 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold443 SAMTools SNP 769310 769310 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C0.49%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold443 SAMTools SNP 769313 769313 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C0.017%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold443 SAMTools SNP 769334 769334 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold443 SAMTools SNP 769367 769367 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C12%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.00073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold443 SAMTools SNP 769768 769768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold443 SAMTools SNP 769781 769781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold443 SAMTools SNP 770649 770649 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold443 SAMTools SNP 770655 770655 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold443 SAMTools SNP 770667 770667 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold443 SAMTools SNP 770700 770700 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold443 SAMTools SNP 771430 771430 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.39%2C2.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold443 SAMTools SNP 772181 772181 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold443 SAMTools SNP 780967 780967 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold444 SAMTools SNP 476 476 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 117350 117350 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold444 SAMTools SNP 117376 117376 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C29%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold444 SAMTools SNP 118912 118912 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C8%2C3%3BMQ%3D48%3BFQ%3D71%3BPV4%3D0.38%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold444 SAMTools SNP 146374 146374 25.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold444 SAMTools SNP 146881 146881 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.2e-06%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C71:47 scaffold444 SAMTools SNP 146894 146894 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.43%2C4.2e-05%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C121:55 scaffold444 SAMTools SNP 152414 152414 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold444 SAMTools SNP 153161 153161 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 189454 189454 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold444 SAMTools SNP 204181 204181 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 204802 204802 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 249671 249671 21.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold444 SAMTools SNP 249876 249876 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold444 SAMTools SNP 271001 271001 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold444 SAMTools SNP 287262 287262 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold444 SAMTools SNP 287315 287315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold444 SAMTools SNP 287552 287552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold444 SAMTools SNP 287949 287949 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold444 SAMTools SNP 288310 288310 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 288800 288800 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C22:25 scaffold444 SAMTools SNP 293988 293988 8.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold444 SAMTools SNP 330494 330494 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold444 SAMTools SNP 331594 331594 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold444 SAMTools SNP 353678 353678 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 353834 353834 17.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C44%2C41%2C47%2C0%2C44:6 scaffold444 SAMTools SNP 386836 386836 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 393253 393253 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold444 SAMTools SNP 438133 438133 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 438759 438759 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 439000 439000 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold444 SAMTools SNP 441694 441694 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.38%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold444 SAMTools SNP 441930 441930 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 447162 447162 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold444 SAMTools SNP 447431 447431 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold444 SAMTools SNP 447690 447690 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold444 SAMTools SNP 448447 448447 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 469272 469272 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 469670 469670 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold444 SAMTools SNP 469727 469727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C28%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold444 SAMTools SNP 470218 470218 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.00063%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold444 SAMTools SNP 470257 470257 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold444 SAMTools SNP 473011 473011 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold444 SAMTools SNP 479806 479806 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold444 SAMTools SNP 482354 482354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D46%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold444 SAMTools SNP 482450 482450 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold444 SAMTools SNP 484242 484242 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C7%2C12%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.053%2C6.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold444 SAMTools SNP 484794 484794 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C75%2C0:99 scaffold444 SAMTools SNP 484837 484837 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.26%3BPV4%3D0.33%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C37:28 scaffold444 SAMTools SNP 484941 484941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold444 SAMTools SNP 484956 484956 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold444 SAMTools SNP 485041 485041 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold444 SAMTools SNP 485061 485061 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold444 SAMTools SNP 485821 485821 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C2%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.58%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold444 SAMTools SNP 485851 485851 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C0.0011%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C247:99 scaffold444 SAMTools SNP 487548 487548 3.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold444 SAMTools SNP 492494 492494 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold444 SAMTools SNP 492500 492500 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold444 SAMTools SNP 492662 492662 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.47%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold444 SAMTools SNP 492680 492680 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold444 SAMTools SNP 496858 496858 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold444 SAMTools SNP 497974 497974 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold444 SAMTools SNP 503066 503066 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C19%2C5%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.23%2C0.00028%2C1%2C3.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold444 SAMTools SNP 503075 503075 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C23%2C7%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.34%2C1%2C5.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold444 SAMTools SNP 503122 503122 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C61%2C0%2C20%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.003%2C4.5e-09%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold444 SAMTools SNP 503860 503860 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C0%2C11%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.58%2C4.3e-05%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold444 SAMTools SNP 504082 504082 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold444 SAMTools SNP 504181 504181 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C106%2C4%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold444 SAMTools SNP 504208 504208 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold444 SAMTools SNP 504615 504615 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C60%2C5%2C17%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold444 SAMTools SNP 505627 505627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 5183 5183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 5224 5224 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold445 SAMTools SNP 7064 7064 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold445 SAMTools SNP 7115 7115 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.14%2C6.2e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C121:86 scaffold445 SAMTools SNP 7122 7122 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.069%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C201:39 scaffold445 SAMTools SNP 7619 7619 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold445 SAMTools SNP 7642 7642 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold445 SAMTools SNP 7720 7720 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold445 SAMTools SNP 8396 8396 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 8837 8837 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 8858 8858 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 9139 9139 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 9162 9162 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 9201 9201 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold445 SAMTools SNP 9644 9644 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold445 SAMTools SNP 10613 10613 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold445 SAMTools SNP 11097 11097 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold445 SAMTools SNP 11194 11194 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold445 SAMTools SNP 11729 11729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 12250 12250 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold445 SAMTools SNP 12439 12439 46.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold445 SAMTools SNP 12681 12681 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold445 SAMTools SNP 12826 12826 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold445 SAMTools SNP 13168 13168 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 13220 13220 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold445 SAMTools SNP 16876 16876 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 16896 16896 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold445 SAMTools SNP 17075 17075 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold445 SAMTools SNP 17095 17095 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold445 SAMTools SNP 17133 17133 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C146:99 scaffold445 SAMTools SNP 18235 18235 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold445 SAMTools SNP 18239 18239 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold445 SAMTools SNP 18738 18738 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold445 SAMTools SNP 18768 18768 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.45%2C0.32%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C175:99 scaffold445 SAMTools SNP 18795 18795 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold445 SAMTools SNP 19627 19627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 19658 19658 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold445 SAMTools SNP 19906 19906 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold445 SAMTools SNP 19936 19936 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold445 SAMTools SNP 20768 20768 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C236:34 scaffold445 SAMTools SNP 22940 22940 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold445 SAMTools SNP 23691 23691 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2058%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1005%2C47%2C853%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1.8e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 23969 23969 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7556%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C2.9e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C73%2C0:99 scaffold445 SAMTools SNP 24005 24005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5942%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C315%2C291%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 29168 29168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 29169 29169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 33906 33906 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C8%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.045%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold445 SAMTools SNP 34252 34252 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C42%2C0:81 scaffold445 SAMTools SNP 35697 35697 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold445 SAMTools SNP 35803 35803 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.036%2C0.36%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold445 SAMTools SNP 36047 36047 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold445 SAMTools SNP 38441 38441 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold445 SAMTools SNP 40883 40883 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C35:38 scaffold445 SAMTools SNP 40884 40884 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C126:31 scaffold445 SAMTools SNP 41101 41101 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold445 SAMTools SNP 41108 41108 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold445 SAMTools SNP 41129 41129 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold445 SAMTools SNP 42317 42317 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C113:71 scaffold445 SAMTools SNP 43131 43131 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold445 SAMTools SNP 43207 43207 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C33%2C0:63 scaffold445 SAMTools SNP 71818 71818 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.52%2C0.19%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C178:99 scaffold445 SAMTools SNP 72582 72582 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold445 SAMTools SNP 72605 72605 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 74683 74683 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold445 SAMTools SNP 83851 83851 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C17%2C5%3BMQ%3D30%3BFQ%3D205%3BPV4%3D0.72%2C0.4%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C237:99 scaffold445 SAMTools SNP 127471 127471 34.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold445 SAMTools SNP 129278 129278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold445 SAMTools SNP 129593 129593 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold445 SAMTools SNP 129605 129605 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold445 SAMTools SNP 129884 129884 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold445 SAMTools SNP 129887 129887 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold445 SAMTools SNP 129971 129971 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C30%2C0:57 scaffold445 SAMTools SNP 130019 130019 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold445 SAMTools SNP 130043 130043 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold445 SAMTools SNP 131377 131377 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold445 SAMTools SNP 134164 134164 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C179:99 scaffold445 SAMTools SNP 134233 134233 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.025%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold445 SAMTools SNP 134739 134739 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 135137 135137 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold445 SAMTools SNP 135596 135596 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.63%2C0.19%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold445 SAMTools SNP 136454 136454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold445 SAMTools SNP 136958 136958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold445 SAMTools SNP 137036 137036 54.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold445 SAMTools SNP 137095 137095 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 137366 137366 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold445 SAMTools SNP 137390 137390 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold445 SAMTools SNP 137944 137944 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 138691 138691 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 138697 138697 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 138902 138902 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.29%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold445 SAMTools SNP 139750 139750 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C81:52 scaffold445 SAMTools SNP 139770 139770 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 139776 139776 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 139995 139995 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 140002 140002 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 140394 140394 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 140431 140431 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 140891 140891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold445 SAMTools SNP 143869 143869 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C212:99 scaffold445 SAMTools SNP 144291 144291 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold445 SAMTools SNP 144313 144313 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 144397 144397 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold445 SAMTools SNP 146267 146267 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold445 SAMTools SNP 146790 146790 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold445 SAMTools SNP 146817 146817 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 146925 146925 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold445 SAMTools SNP 146988 146988 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold445 SAMTools SNP 146995 146995 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold445 SAMTools SNP 147041 147041 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold445 SAMTools SNP 151116 151116 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.026%2C0.091%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold445 SAMTools SNP 154375 154375 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold445 SAMTools SNP 156971 156971 50.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold445 SAMTools SNP 157070 157070 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.33%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C248:74 scaffold445 SAMTools SNP 157097 157097 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C7.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold445 SAMTools SNP 157971 157971 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold445 SAMTools SNP 158885 158885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold445 SAMTools SNP 158962 158962 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C60%2C0:99 scaffold445 SAMTools SNP 159266 159266 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 159401 159401 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold445 SAMTools SNP 159422 159422 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold445 SAMTools SNP 172823 172823 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 178982 178982 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold445 SAMTools SNP 178991 178991 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C172:99 scaffold445 SAMTools SNP 181089 181089 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C21%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C6.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold445 SAMTools SNP 182054 182054 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C1%3BMQ%3D46%3BFQ%3D82%3BPV4%3D1%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C244:99 scaffold445 SAMTools SNP 182431 182431 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold445 SAMTools SNP 182921 182921 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.5%2C0.14%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C66:69 scaffold445 SAMTools SNP 182998 182998 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C30%2C0:56 scaffold445 SAMTools SNP 187905 187905 51.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold445 SAMTools SNP 193630 193630 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold445 SAMTools SNP 193648 193648 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold445 SAMTools SNP 195535 195535 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold445 SAMTools SNP 195567 195567 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold445 SAMTools SNP 195739 195739 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold445 SAMTools SNP 195885 195885 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold445 SAMTools SNP 197546 197546 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C104:99 scaffold445 SAMTools SNP 197609 197609 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.072%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C173:99 scaffold445 SAMTools SNP 197633 197633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 198492 198492 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold445 SAMTools SNP 199125 199125 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold445 SAMTools SNP 199137 199137 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold445 SAMTools SNP 199565 199565 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.21%2C7.2e-05%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C234:48 scaffold445 SAMTools SNP 199658 199658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold445 SAMTools SNP 199948 199948 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold445 SAMTools SNP 199965 199965 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.083%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold445 SAMTools SNP 200120 200120 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold445 SAMTools SNP 200434 200434 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold445 SAMTools SNP 200437 200437 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 200497 200497 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold445 SAMTools SNP 200500 200500 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold445 SAMTools SNP 201397 201397 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.036%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold445 SAMTools SNP 203481 203481 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 203492 203492 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 203547 203547 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.34%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold445 SAMTools SNP 203562 203562 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold445 SAMTools SNP 204920 204920 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold445 SAMTools SNP 204929 204929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold445 SAMTools SNP 208143 208143 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00041%2C8.6e-06%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C211:99 scaffold445 SAMTools SNP 208535 208535 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.22%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C6:9 scaffold445 SAMTools SNP 210759 210759 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.44%2C6.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C234:99 scaffold445 SAMTools SNP 210788 210788 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.061%2C0.00035%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C227:49 scaffold445 SAMTools SNP 210843 210843 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold445 SAMTools SNP 211497 211497 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C69:72 scaffold445 SAMTools SNP 211542 211542 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold445 SAMTools SNP 213761 213761 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C122:37 scaffold445 SAMTools SNP 219629 219629 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C66%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C241%2C0:99 scaffold445 SAMTools SNP 220074 220074 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C31%2C15%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.47%2C9.2e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold445 SAMTools SNP 220172 220172 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C34%2C12%2C33%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0024%2C3e-87%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold445 SAMTools SNP 220372 220372 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold445 SAMTools SNP 222165 222165 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 223347 223347 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold445 SAMTools SNP 224110 224110 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold445 SAMTools SNP 224361 224361 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold445 SAMTools SNP 224741 224741 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold445 SAMTools SNP 224889 224889 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold445 SAMTools SNP 224930 224930 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.19%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold445 SAMTools SNP 227326 227326 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 228127 228127 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.22%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 228199 228199 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 229291 229291 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold445 SAMTools SNP 229658 229658 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 229694 229694 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C32%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 232464 232464 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C23%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C231:99 scaffold445 SAMTools SNP 232477 232477 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold445 SAMTools SNP 232496 232496 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold445 SAMTools SNP 251173 251173 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 251358 251358 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 251387 251387 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold445 SAMTools SNP 251429 251429 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold445 SAMTools SNP 251683 251683 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.42%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold445 SAMTools SNP 251716 251716 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold445 SAMTools SNP 252301 252301 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold445 SAMTools SNP 252310 252310 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold445 SAMTools SNP 252712 252712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 252863 252863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 252929 252929 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.21%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 252965 252965 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C17%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 253096 253096 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 253123 253123 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.38%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold445 SAMTools SNP 253153 253153 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C39%2C0:75 scaffold445 SAMTools SNP 253348 253348 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D1%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C121:99 scaffold445 SAMTools SNP 253907 253907 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold445 SAMTools SNP 260734 260734 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 260786 260786 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold445 SAMTools SNP 261570 261570 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C23%2C1%3BMQ%3D35%3BFQ%3D157%3BPV4%3D0.3%2C1%2C0.00063%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold445 SAMTools SNP 263345 263345 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold445 SAMTools SNP 263493 263493 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C61%2C41%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.41%2C0.47%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 263592 263592 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C67%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 263777 263777 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 263808 263808 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0169%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C14%2C51%2C58%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.00035%2C0.44%2C0.36%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold445 SAMTools SNP 263852 263852 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C57%2C49%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D0.012%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold445 SAMTools SNP 263861 263861 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 264067 264067 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C69%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold445 SAMTools SNP 264449 264449 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold445 SAMTools SNP 265199 265199 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0367%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-5.48%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C23:26 scaffold445 SAMTools SNP 266423 266423 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D1%2C9.2e-14%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C63:60 scaffold445 SAMTools SNP 273770 273770 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 274375 274375 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold445 SAMTools SNP 274496 274496 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold445 SAMTools SNP 274981 274981 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold445 SAMTools SNP 275297 275297 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold445 SAMTools SNP 275333 275333 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold445 SAMTools SNP 276467 276467 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold445 SAMTools SNP 279610 279610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold445 SAMTools SNP 281409 281409 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold445 SAMTools SNP 281449 281449 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 282742 282742 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 282803 282803 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C66:69 scaffold445 SAMTools SNP 282893 282893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold445 SAMTools SNP 282899 282899 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold445 SAMTools SNP 286135 286135 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0037%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold445 SAMTools SNP 286243 286243 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold445 SAMTools SNP 286696 286696 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold445 SAMTools SNP 286703 286703 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold445 SAMTools SNP 286711 286711 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.068%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold445 SAMTools SNP 293112 293112 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 293132 293132 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 294244 294244 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C97:99 scaffold445 SAMTools SNP 294674 294674 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C113%2C11%2C20%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold445 SAMTools SNP 294680 294680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C58%2C113%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.84%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold445 SAMTools SNP 295016 295016 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C148%3BMQ%3D50%3BFQ%3D-186;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C96:99 scaffold445 SAMTools SNP 295388 295388 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 296075 296075 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C10%2C236%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1.6e-09%2C0.28%2C1%2C5.3e-16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold445 SAMTools SNP 296467 296467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C39%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 296470 296470 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C0.37%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 296699 296699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C37%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold445 SAMTools SNP 297096 297096 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C16%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C245:99 scaffold445 SAMTools SNP 297134 297134 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold445 SAMTools SNP 298953 298953 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold445 SAMTools SNP 300110 300110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold445 SAMTools SNP 300451 300451 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold445 SAMTools SNP 302892 302892 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.089%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold445 SAMTools SNP 303448 303448 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold445 SAMTools SNP 303505 303505 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold445 SAMTools SNP 304911 304911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold445 SAMTools SNP 305321 305321 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 305342 305342 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.12%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 306239 306239 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold445 SAMTools SNP 306727 306727 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold445 SAMTools SNP 307148 307148 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold445 SAMTools SNP 307163 307163 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold445 SAMTools SNP 308594 308594 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C153:51 scaffold445 SAMTools SNP 310121 310121 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 310157 310157 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.46%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold445 SAMTools SNP 310193 310193 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold445 SAMTools SNP 310196 310196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold445 SAMTools SNP 310384 310384 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold445 SAMTools SNP 310938 310938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold445 SAMTools SNP 311489 311489 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold445 SAMTools SNP 311536 311536 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold445 SAMTools SNP 311564 311564 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 313998 313998 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 315305 315305 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold445 SAMTools SNP 316318 316318 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold445 SAMTools SNP 316593 316593 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C30%2C0:57 scaffold445 SAMTools SNP 316712 316712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold445 SAMTools SNP 322597 322597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold445 SAMTools SNP 327110 327110 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold445 SAMTools SNP 327428 327428 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C222:99 scaffold445 SAMTools SNP 327796 327796 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.14%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold445 SAMTools SNP 328499 328499 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold445 SAMTools SNP 328508 328508 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C151:99 scaffold445 SAMTools SNP 328525 328525 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold445 SAMTools SNP 328840 328840 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold445 SAMTools SNP 331400 331400 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 331612 331612 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C0.068%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold445 SAMTools SNP 331774 331774 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold445 SAMTools SNP 335066 335066 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 335080 335080 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 336232 336232 92.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold445 SAMTools SNP 336318 336318 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C24%2C0:45 scaffold445 SAMTools SNP 337309 337309 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.096%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold445 SAMTools SNP 337434 337434 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C41:43 scaffold445 SAMTools SNP 343582 343582 50.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold445 SAMTools SNP 343926 343926 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.057%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C186:53 scaffold445 SAMTools SNP 344107 344107 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold445 SAMTools SNP 344191 344191 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C48%2C0:93 scaffold445 SAMTools SNP 347255 347255 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.017%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold445 SAMTools SNP 347269 347269 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.12%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C9:12 scaffold445 SAMTools SNP 347271 347271 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold445 SAMTools SNP 347379 347379 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C42%2C0:81 scaffold445 SAMTools SNP 347395 347395 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C9%2C0%3BMQ%3D37%3BFQ%3D27%3BPV4%3D0.54%2C1%2C0.0062%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold445 SAMTools SNP 347422 347422 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C2%3BMQ%3D28%3BFQ%3D76.8%3BPV4%3D0.18%2C0.091%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C117:99 scaffold445 SAMTools SNP 347803 347803 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C12%3BMQ%3D30%3BFQ%3D91%3BPV4%3D1%2C0.095%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C118:99 scaffold445 SAMTools SNP 347830 347830 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C14%3BMQ%3D31%3BFQ%3D55%3BPV4%3D0.13%2C0.27%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C82:85 scaffold445 SAMTools SNP 348042 348042 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold445 SAMTools SNP 348070 348070 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C16%2C0%3BMQ%3D34%3BFQ%3D80%3BPV4%3D1.3e-05%2C0.15%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C107:99 scaffold445 SAMTools SNP 348093 348093 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D41%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold445 SAMTools SNP 348367 348367 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C8%2C0%3BMQ%3D47%3BFQ%3D115%3BPV4%3D0.078%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold445 SAMTools SNP 348379 348379 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C5%2C0%3BMQ%3D46%3BFQ%3D72%3BPV4%3D0.13%2C0.32%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold445 SAMTools SNP 349136 349136 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 349873 349873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 356884 356884 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.33%2C4.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold445 SAMTools SNP 356930 356930 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.16%2C0.27%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold445 SAMTools SNP 356965 356965 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C26%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold445 SAMTools SNP 357289 357289 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C0%2C31%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold445 SAMTools SNP 357956 357956 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C4%2C19%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.12%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold445 SAMTools SNP 357964 357964 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold445 SAMTools SNP 358016 358016 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold445 SAMTools SNP 358018 358018 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 358460 358460 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.27%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold445 SAMTools SNP 358939 358939 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.064%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold445 SAMTools SNP 358958 358958 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.65%2C0.076%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold445 SAMTools SNP 359105 359105 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C33%2C0:63 scaffold445 SAMTools SNP 359144 359144 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold445 SAMTools SNP 359156 359156 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.35%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold445 SAMTools SNP 359168 359168 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold445 SAMTools SNP 371853 371853 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold445 SAMTools SNP 371985 371985 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold445 SAMTools SNP 425358 425358 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold445 SAMTools SNP 426475 426475 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold445 SAMTools SNP 444199 444199 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold445 SAMTools SNP 444241 444241 88 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C21%2C117%2C0%2C114:16 scaffold445 SAMTools SNP 467895 467895 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold445 SAMTools SNP 468511 468511 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold445 SAMTools SNP 525605 525605 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C77:80 scaffold445 SAMTools SNP 525678 525678 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.0011%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold445 SAMTools SNP 526377 526377 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 530027 530027 42.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold445 SAMTools SNP 536798 536798 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold445 SAMTools SNP 551067 551067 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 557232 557232 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold445 SAMTools SNP 557236 557236 49.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold445 SAMTools SNP 558854 558854 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold445 SAMTools SNP 558882 558882 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold445 SAMTools SNP 559038 559038 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 559147 559147 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold445 SAMTools SNP 559475 559475 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold445 SAMTools SNP 566717 566717 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold445 SAMTools SNP 566882 566882 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C11%2C1%3BMQ%3D49%3BFQ%3D143%3BPV4%3D0.25%2C1%2C0.21%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C240:99 scaffold445 SAMTools SNP 567036 567036 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D48%3BFQ%3D126%3BPV4%3D1%2C0.004%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C168:99 scaffold445 SAMTools SNP 569959 569959 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold445 SAMTools SNP 570784 570784 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 570831 570831 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold445 SAMTools SNP 573745 573745 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold445 SAMTools SNP 577592 577592 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold445 SAMTools SNP 577896 577896 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 581914 581914 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold445 SAMTools SNP 581959 581959 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold445 SAMTools SNP 582576 582576 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold445 SAMTools SNP 583090 583090 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold445 SAMTools SNP 583118 583118 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold445 SAMTools SNP 585795 585795 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C29%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold445 SAMTools SNP 593272 593272 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold445 SAMTools SNP 593847 593847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold445 SAMTools SNP 593850 593850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold445 SAMTools SNP 594356 594356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold445 SAMTools SNP 597517 597517 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold445 SAMTools SNP 599424 599424 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold445 SAMTools SNP 600882 600882 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold446 SAMTools SNP 55289 55289 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold446 SAMTools SNP 55290 55290 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold446 SAMTools SNP 77457 77457 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold446 SAMTools SNP 124635 124635 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold446 SAMTools SNP 136453 136453 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C11%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C141:66 scaffold446 SAMTools SNP 137921 137921 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold446 SAMTools SNP 137987 137987 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold447 SAMTools SNP 5140 5140 73.1 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold447 SAMTools SNP 5141 5141 64.1 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold447 SAMTools SNP 19351 19351 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold447 SAMTools SNP 22499 22499 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold447 SAMTools SNP 22713 22713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold447 SAMTools SNP 24528 24528 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 26085 26085 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold447 SAMTools SNP 30576 30576 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 63032 63032 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold447 SAMTools SNP 63215 63215 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold447 SAMTools SNP 63257 63257 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C2.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C143:99 scaffold447 SAMTools SNP 63431 63431 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C16%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.36%2C7.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold447 SAMTools SNP 63490 63490 38.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold447 SAMTools SNP 64091 64091 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold447 SAMTools SNP 64117 64117 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold447 SAMTools SNP 64283 64283 46.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold447 SAMTools SNP 64832 64832 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C1.9e-08%2C1%2C5.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold447 SAMTools SNP 65132 65132 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold447 SAMTools SNP 65396 65396 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0035%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold447 SAMTools SNP 66358 66358 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 66394 66394 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 110598 110598 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C20%2C0%2C16%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D5.7e-05%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold447 SAMTools SNP 140710 140710 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold447 SAMTools SNP 140806 140806 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold447 SAMTools SNP 144637 144637 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 144657 144657 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 147569 147569 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold447 SAMTools SNP 148053 148053 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold447 SAMTools SNP 148074 148074 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold447 SAMTools SNP 148091 148091 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold447 SAMTools SNP 158534 158534 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 160534 160534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold447 SAMTools SNP 160858 160858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold447 SAMTools SNP 160885 160885 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold447 SAMTools SNP 161501 161501 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold447 SAMTools SNP 161508 161508 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.11%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C118:81 scaffold447 SAMTools SNP 161556 161556 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold447 SAMTools SNP 168117 168117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold447 SAMTools SNP 168178 168178 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold447 SAMTools SNP 168196 168196 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold447 SAMTools SNP 172228 172228 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.0038%2C0.044%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold447 SAMTools SNP 172301 172301 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold447 SAMTools SNP 172322 172322 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold447 SAMTools SNP 173408 173408 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold447 SAMTools SNP 174886 174886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C84%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold447 SAMTools SNP 174892 174892 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C56%2C65%3BMQ%3D50%3BFQ%3D-204%3BPV4%3D0.66%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C177%2C0:99 scaffold447 SAMTools SNP 182234 182234 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold447 SAMTools SNP 182330 182330 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold447 SAMTools SNP 183087 183087 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold447 SAMTools SNP 183597 183597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 183616 183616 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold447 SAMTools SNP 183642 183642 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold447 SAMTools SNP 184411 184411 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold447 SAMTools SNP 184458 184458 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold447 SAMTools SNP 184857 184857 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold447 SAMTools SNP 219139 219139 34.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold447 SAMTools SNP 219146 219146 36.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold447 SAMTools SNP 219341 219341 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold447 SAMTools SNP 220625 220625 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold447 SAMTools SNP 220672 220672 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C21%2C0:39 scaffold447 SAMTools SNP 220932 220932 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold447 SAMTools SNP 227430 227430 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C104%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C9.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C255%2C0:99 scaffold447 SAMTools SNP 231256 231256 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold447 SAMTools SNP 231258 231258 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C27:30 scaffold447 SAMTools SNP 231334 231334 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C10%3BMQ%3D48%3BFQ%3D38%3BPV4%3D0.26%2C2.7e-17%2C0.13%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C186:68 scaffold447 SAMTools SNP 232777 232777 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C1%3BMQ%3D48%3BFQ%3D90%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold447 SAMTools SNP 235091 235091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C3%2C31%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.28%2C1%2C0.34%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold447 SAMTools SNP 235409 235409 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.11%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C78:41 scaffold447 SAMTools SNP 235903 235903 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold447 SAMTools SNP 235915 235915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold447 SAMTools SNP 235936 235936 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold447 SAMTools SNP 235939 235939 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold447 SAMTools SNP 235954 235954 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.49%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold447 SAMTools SNP 237519 237519 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C9.1e-21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold447 SAMTools SNP 243868 243868 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold447 SAMTools SNP 244764 244764 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold447 SAMTools SNP 245438 245438 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C39%2C0:72 scaffold447 SAMTools SNP 246345 246345 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C14%2C7%2C3%3BMQ%3D49%3BFQ%3D106%3BPV4%3D1%2C0.41%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold447 SAMTools SNP 247472 247472 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.8e-17%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C150:31 scaffold447 SAMTools SNP 249150 249150 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold447 SAMTools SNP 261970 261970 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C5.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold447 SAMTools SNP 301556 301556 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold447 SAMTools SNP 311783 311783 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold447 SAMTools SNP 311789 311789 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold447 SAMTools SNP 311828 311828 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold447 SAMTools SNP 312825 312825 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold447 SAMTools SNP 312831 312831 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold447 SAMTools SNP 313093 313093 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C27%2C0:51 scaffold447 SAMTools SNP 313260 313260 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C3.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C145:48 scaffold447 SAMTools SNP 313271 313271 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C36%2C0:69 scaffold447 SAMTools SNP 313608 313608 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C3%2C19%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.7%2C2.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold447 SAMTools SNP 313771 313771 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.4e-16%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C236:34 scaffold447 SAMTools SNP 319809 319809 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold447 SAMTools SNP 354599 354599 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold447 SAMTools SNP 368952 368952 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.8e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold447 SAMTools SNP 369157 369157 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold447 SAMTools SNP 378726 378726 16.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold447 SAMTools SNP 380670 380670 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold447 SAMTools SNP 381958 381958 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold447 SAMTools SNP 382404 382404 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C76:78 scaffold447 SAMTools SNP 382738 382738 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.093%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold447 SAMTools SNP 382821 382821 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold447 SAMTools SNP 382824 382824 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold447 SAMTools SNP 383351 383351 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold448 SAMTools SNP 3056 3056 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold448 SAMTools SNP 3059 3059 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold448 SAMTools SNP 42931 42931 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D0.33%2C0%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold448 SAMTools SNP 53708 53708 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0076%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold448 SAMTools SNP 86454 86454 67.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.25%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C0:3 scaffold448 SAMTools SNP 86625 86625 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C116:91 scaffold448 SAMTools SNP 87006 87006 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 87249 87249 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold448 SAMTools SNP 89558 89558 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold448 SAMTools SNP 89576 89576 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 91332 91332 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 92582 92582 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.25%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold448 SAMTools SNP 92589 92589 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C211:69 scaffold448 SAMTools SNP 92597 92597 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 97162 97162 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold448 SAMTools SNP 97203 97203 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 98832 98832 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.081%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C150:70 scaffold448 SAMTools SNP 99910 99910 51.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold448 SAMTools SNP 99961 99961 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C51%2C0:99 scaffold448 SAMTools SNP 99994 99994 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C42%2C0:81 scaffold448 SAMTools SNP 106166 106166 43.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold448 SAMTools SNP 106462 106462 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0053%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C226:57 scaffold448 SAMTools SNP 107283 107283 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold448 SAMTools SNP 107498 107498 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C29%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C99%2C0:99 scaffold448 SAMTools SNP 115869 115869 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.69%3BPV4%3D1%2C0.1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C49:34 scaffold448 SAMTools SNP 115926 115926 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C56%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold448 SAMTools SNP 116317 116317 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold448 SAMTools SNP 116585 116585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold448 SAMTools SNP 116655 116655 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 116684 116684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold448 SAMTools SNP 116702 116702 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C7%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold448 SAMTools SNP 118527 118527 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold448 SAMTools SNP 118539 118539 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold448 SAMTools SNP 122028 122028 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 122280 122280 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 127780 127780 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold448 SAMTools SNP 130401 130401 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 131320 131320 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold448 SAMTools SNP 131352 131352 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.29%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold448 SAMTools SNP 131547 131547 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold448 SAMTools SNP 131559 131559 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold448 SAMTools SNP 132771 132771 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 132780 132780 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 159015 159015 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 161763 161763 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C248:28 scaffold448 SAMTools SNP 175244 175244 24.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold448 SAMTools SNP 176180 176180 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold448 SAMTools SNP 186282 186282 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C54%2C0:99 scaffold448 SAMTools SNP 188420 188420 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold448 SAMTools SNP 188510 188510 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold448 SAMTools SNP 189939 189939 47.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold448 SAMTools SNP 190373 190373 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold448 SAMTools SNP 191023 191023 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 213909 213909 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 241721 241721 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold448 SAMTools SNP 298163 298163 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold448 SAMTools SNP 301390 301390 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold448 SAMTools SNP 304818 304818 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold448 SAMTools SNP 324941 324941 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 332691 332691 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold448 SAMTools SNP 342822 342822 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 372706 372706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 372719 372719 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold448 SAMTools SNP 376660 376660 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold448 SAMTools SNP 376676 376676 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold448 SAMTools SNP 376679 376679 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold448 SAMTools SNP 378557 378557 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold448 SAMTools SNP 402955 402955 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 403288 403288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 403383 403383 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 403411 403411 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 406980 406980 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 407470 407470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 407536 407536 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 408185 408185 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 409029 409029 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold448 SAMTools SNP 409519 409519 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D47%3BFQ%3D45%3BPV4%3D1%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C167:75 scaffold448 SAMTools SNP 409580 409580 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold448 SAMTools SNP 409600 409600 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D50%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C77:80 scaffold448 SAMTools SNP 411484 411484 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 411555 411555 25.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C0%3BMQ%3D20%3BFQ%3D-11.3%3BPV4%3D1%2C0.22%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C16:19 scaffold448 SAMTools SNP 423430 423430 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold448 SAMTools SNP 423433 423433 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C44:47 scaffold448 SAMTools SNP 423828 423828 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.33%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold448 SAMTools SNP 423852 423852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold448 SAMTools SNP 423864 423864 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C5%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.7%2C0.044%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold448 SAMTools SNP 424454 424454 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C28%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 424484 424484 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C17%2C14%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold448 SAMTools SNP 424610 424610 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C35%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 424788 424788 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C30%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.22%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 424803 424803 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C5%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold448 SAMTools SNP 425207 425207 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C60%2C2%2C8%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold448 SAMTools SNP 425654 425654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C78%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold448 SAMTools SNP 425682 425682 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C10%2C62%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 425783 425783 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C11%2C2%3BMQ%3D43%3BFQ%3D92%3BPV4%3D0.019%2C3.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold448 SAMTools SNP 425816 425816 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C52%2C0%2C13%3BMQ%3D46%3BFQ%3D100%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold448 SAMTools SNP 425826 425826 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C59%2C0%2C7%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold448 SAMTools SNP 425988 425988 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C47%2C0%2C15%3BMQ%3D46%3BFQ%3D101%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold448 SAMTools SNP 426081 426081 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C6%2C0%3BMQ%3D39%3BFQ%3D20.1%3BPV4%3D0.56%2C2.4e-06%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold448 SAMTools SNP 426126 426126 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D69%2C12%2C9%2C9%3BMQ%3D42%3BFQ%3D6.99%3BPV4%3D0.0025%2C1%2C3.8e-05%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold448 SAMTools SNP 426144 426144 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C53%2C16%3BMQ%3D42%3BFQ%3D194%3BPV4%3D0.41%2C0.46%2C0.0041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C223:99 scaffold448 SAMTools SNP 426630 426630 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C36%2C6%2C20%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.007%2C5.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold448 SAMTools SNP 426828 426828 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold448 SAMTools SNP 426849 426849 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C53%2C0%2C13%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.061%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold448 SAMTools SNP 426888 426888 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 426906 426906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 427308 427308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold448 SAMTools SNP 427440 427440 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C45%2C0%2C39%3BMQ%3D50%3BFQ%3D206%3BPV4%3D8.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold448 SAMTools SNP 427446 427446 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C67%2C6%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.014%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold448 SAMTools SNP 427761 427761 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C70%2C5%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold448 SAMTools SNP 427782 427782 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C37%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.32%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 427800 427800 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold448 SAMTools SNP 429443 429443 99.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C18%2C0:33 scaffold448 SAMTools SNP 430973 430973 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 432824 432824 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold448 SAMTools SNP 432841 432841 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0012%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold448 SAMTools SNP 432897 432897 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 432933 432933 7.83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.00032%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C17:21 scaffold448 SAMTools SNP 433109 433109 10.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold448 SAMTools SNP 436894 436894 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 437297 437297 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C42%2C0:80 scaffold448 SAMTools SNP 437310 437310 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D39%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C69%2C0:99 scaffold448 SAMTools SNP 437347 437347 101 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C0%2C15%3BMQ%3D42%3BFQ%3D104%3BPV4%3D2.2e-07%2C0.26%2C0.009%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold448 SAMTools SNP 437350 437350 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C15%2C7%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 437677 437677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C14%3BMQ%3D41%3BFQ%3D196%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C223:99 scaffold448 SAMTools SNP 437701 437701 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C16%3BMQ%3D49%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C77:80 scaffold448 SAMTools SNP 438377 438377 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 438386 438386 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 438926 438926 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C76:79 scaffold448 SAMTools SNP 439127 439127 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold448 SAMTools SNP 439301 439301 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 505557 505557 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C162:99 scaffold448 SAMTools SNP 567438 567438 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold448 SAMTools SNP 597280 597280 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold448 SAMTools SNP 597377 597377 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.37%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C115:37 scaffold448 SAMTools SNP 599205 599205 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C140:65 scaffold448 SAMTools SNP 610047 610047 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 649924 649924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 658109 658109 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold448 SAMTools SNP 658138 658138 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 658599 658599 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold448 SAMTools SNP 659089 659089 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 661439 661439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold448 SAMTools SNP 664433 664433 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 664720 664720 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 665081 665081 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 665316 665316 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold448 SAMTools SNP 665331 665331 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.16%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold448 SAMTools SNP 665712 665712 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00013%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold448 SAMTools SNP 665781 665781 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold448 SAMTools SNP 667097 667097 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C120%2C0:99 scaffold448 SAMTools SNP 675678 675678 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 680773 680773 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 680864 680864 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 702055 702055 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold448 SAMTools SNP 713121 713121 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 713134 713134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 714718 714718 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 714720 714720 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 732593 732593 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C8%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.65%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold448 SAMTools SNP 732626 732626 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C5%2C10%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C6e-18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold448 SAMTools SNP 736776 736776 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.26%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold448 SAMTools SNP 743231 743231 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold448 SAMTools SNP 743526 743526 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0049%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold448 SAMTools SNP 743563 743563 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 743726 743726 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold448 SAMTools SNP 744378 744378 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C12%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D4.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold448 SAMTools SNP 753256 753256 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 757442 757442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 781982 781982 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 782019 782019 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 783252 783252 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.58%2C1%2C1%2C4.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold448 SAMTools SNP 783302 783302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-72%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold448 SAMTools SNP 783308 783308 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C5%2C18%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.11%2C0.073%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold448 SAMTools SNP 783327 783327 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C47%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.026%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold448 SAMTools SNP 787450 787450 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold448 SAMTools SNP 820430 820430 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold448 SAMTools SNP 830644 830644 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 830677 830677 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 834133 834133 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold448 SAMTools SNP 834143 834143 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C240:99 scaffold448 SAMTools SNP 834883 834883 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.07%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold448 SAMTools SNP 835341 835341 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold448 SAMTools SNP 835359 835359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold448 SAMTools SNP 835767 835767 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C0.34%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C177:99 scaffold448 SAMTools SNP 835785 835785 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C177:99 scaffold448 SAMTools SNP 835969 835969 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 842403 842403 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 842745 842745 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C8%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C6.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 850782 850782 3.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold448 SAMTools SNP 854584 854584 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.46%2C0.002%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C65:44 scaffold448 SAMTools SNP 854596 854596 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D24.9%3BPV4%3D1%2C0.015%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C67:55 scaffold448 SAMTools SNP 857511 857511 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold448 SAMTools SNP 858251 858251 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C10%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.065%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 860847 860847 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold448 SAMTools SNP 862582 862582 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 862768 862768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C54%2C11%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D0.18%2C0.36%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C0:99 scaffold448 SAMTools SNP 863620 863620 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C27%2C0:51 scaffold448 SAMTools SNP 864587 864587 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C169:99 scaffold448 SAMTools SNP 865573 865573 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D847%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D387%2C7%2C435%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold448 SAMTools SNP 866745 866745 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C29%2C124%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 866761 866761 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C23%2C143%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 866767 866767 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C34%2C68%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C3.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 866785 866785 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C42%2C6%2C20%3BMQ%3D50%3BFQ%3D134%3BPV4%3D8.8e-06%2C0.0022%2C1%2C4.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold448 SAMTools SNP 866809 866809 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C69%2C4%2C57%3BMQ%3D50%3BFQ%3D164%3BPV4%3D5.9e-16%2C2.6e-12%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold448 SAMTools SNP 870128 870128 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold448 SAMTools SNP 870468 870468 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold448 SAMTools SNP 871624 871624 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C74%2C28%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 872026 872026 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C47%2C30%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-06%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 872068 872068 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C25%2C17%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.00015%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 872596 872596 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C1%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-05%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 872638 872638 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C25%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold448 SAMTools SNP 872695 872695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C22%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold448 SAMTools SNP 873101 873101 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 873113 873113 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 889802 889802 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 890031 890031 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 890045 890045 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 890105 890105 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 890259 890259 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 892718 892718 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 904841 904841 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C10%2C30%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00029%2C0.19%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold448 SAMTools SNP 905604 905604 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold448 SAMTools SNP 906395 906395 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C21%2C48%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 907530 907530 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 909998 909998 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C1%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.27%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C232:99 scaffold448 SAMTools SNP 910130 910130 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold448 SAMTools SNP 913345 913345 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.52%2C0.13%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold448 SAMTools SNP 913368 913368 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold448 SAMTools SNP 913590 913590 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.087%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C251:99 scaffold448 SAMTools SNP 914164 914164 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C5%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold448 SAMTools SNP 914179 914179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold448 SAMTools SNP 914989 914989 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C52%2C0%2C12%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.34%2C0.41%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold448 SAMTools SNP 915064 915064 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold448 SAMTools SNP 915259 915259 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold448 SAMTools SNP 915289 915289 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C9%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold448 SAMTools SNP 915645 915645 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 915699 915699 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 918100 918100 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C25%2C5%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.36%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold448 SAMTools SNP 918128 918128 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold448 SAMTools SNP 920710 920710 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C42%2C0:75 scaffold448 SAMTools SNP 920938 920938 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold448 SAMTools SNP 920974 920974 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold448 SAMTools SNP 920981 920981 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold448 SAMTools SNP 926769 926769 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold448 SAMTools SNP 926893 926893 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold448 SAMTools SNP 927946 927946 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold448 SAMTools SNP 928255 928255 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold448 SAMTools SNP 928321 928321 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold448 SAMTools SNP 928330 928330 73.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold448 SAMTools SNP 929017 929017 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold448 SAMTools SNP 929566 929566 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C1%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D1%2C1.8e-15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold448 SAMTools SNP 929824 929824 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold448 SAMTools SNP 929826 929826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 929850 929850 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold448 SAMTools SNP 930419 930419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold448 SAMTools SNP 931666 931666 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 933347 933347 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold448 SAMTools SNP 960496 960496 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold448 SAMTools SNP 962851 962851 100 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C94%2C85%2C133%2C0%2C127:16 scaffold448 SAMTools SNP 966026 966026 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C36%2C0:69 scaffold448 SAMTools SNP 966107 966107 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C206:99 scaffold448 SAMTools SNP 966600 966600 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.3e-12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C246:56 scaffold448 SAMTools SNP 966949 966949 17.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold448 SAMTools SNP 967494 967494 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.44%2C4e-10%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C224:97 scaffold448 SAMTools SNP 968520 968520 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold448 SAMTools SNP 968971 968971 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C18%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.65%2C1.6e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold448 SAMTools SNP 979246 979246 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0058%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold448 SAMTools SNP 979772 979772 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold448 SAMTools SNP 979811 979811 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.24%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold448 SAMTools SNP 981127 981127 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold448 SAMTools SNP 981421 981421 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold448 SAMTools SNP 981611 981611 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold448 SAMTools SNP 982431 982431 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold448 SAMTools SNP 982449 982449 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold448 SAMTools SNP 982758 982758 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold448 SAMTools SNP 986330 986330 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold448 SAMTools SNP 986943 986943 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold448 SAMTools SNP 987845 987845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 987869 987869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold448 SAMTools SNP 987909 987909 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.3%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold448 SAMTools SNP 989308 989308 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold448 SAMTools SNP 990180 990180 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 990494 990494 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 1016436 1016436 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 1016497 1016497 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold448 SAMTools SNP 1016659 1016659 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold448 SAMTools SNP 1016719 1016719 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C27%2C0:51 scaffold448 SAMTools SNP 1016799 1016799 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold448 SAMTools SNP 1017009 1017009 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C30%2C0:57 scaffold448 SAMTools SNP 1017049 1017049 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold448 SAMTools SNP 1017199 1017199 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold448 SAMTools SNP 1017394 1017394 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold449 SAMTools SNP 221 221 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold449 SAMTools SNP 476 476 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C48%2C0:93 scaffold449 SAMTools SNP 14279 14279 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold449 SAMTools SNP 21603 21603 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C5%2C3%3BMQ%3D35%3BFQ%3D101%3BPV4%3D0.1%2C0.26%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold449 SAMTools SNP 21621 21621 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C11%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.12%2C0.28%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 23393 23393 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C3%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.064%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold449 SAMTools SNP 23421 23421 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C40%2C1%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.48%2C0.36%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold449 SAMTools SNP 23453 23453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 23464 23464 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold449 SAMTools SNP 25443 25443 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C33%2C0:63 scaffold449 SAMTools SNP 26150 26150 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C2%2C17%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.27%2C1.2e-20%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold449 SAMTools SNP 26324 26324 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold449 SAMTools SNP 35200 35200 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold449 SAMTools SNP 44412 44412 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold449 SAMTools SNP 51069 51069 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C124:89 scaffold449 SAMTools SNP 51101 51101 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C4.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C154:54 scaffold449 SAMTools SNP 51423 51423 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.047%2C9.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold449 SAMTools SNP 70476 70476 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold449 SAMTools SNP 136437 136437 4.11 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold449 SAMTools SNP 177704 177704 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold449 SAMTools SNP 177949 177949 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold449 SAMTools SNP 190948 190948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold449 SAMTools SNP 191326 191326 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold449 SAMTools SNP 191585 191585 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold449 SAMTools SNP 191612 191612 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C0%2C17%3BMQ%3D50%3BFQ%3D56%3BPV4%3D8.4e-05%2C1e-14%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold449 SAMTools SNP 192615 192615 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold449 SAMTools SNP 193164 193164 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C32:35 scaffold449 SAMTools SNP 193181 193181 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C255%2C0:99 scaffold449 SAMTools SNP 193469 193469 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.015%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold449 SAMTools SNP 195112 195112 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.23%2C1%2C1%2C7.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold449 SAMTools SNP 215324 215324 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold449 SAMTools SNP 215834 215834 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.63%2C7.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold449 SAMTools SNP 219984 219984 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.2%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C134:99 scaffold449 SAMTools SNP 219985 219985 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C142:99 scaffold449 SAMTools SNP 220021 220021 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold449 SAMTools SNP 220332 220332 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold449 SAMTools SNP 220371 220371 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold449 SAMTools SNP 221108 221108 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold449 SAMTools SNP 221123 221123 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold449 SAMTools SNP 221153 221153 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold449 SAMTools SNP 221652 221652 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold449 SAMTools SNP 222063 222063 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C225:99 scaffold449 SAMTools SNP 222100 222100 135 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C87%2C192%2C0%2C183:27 scaffold449 SAMTools SNP 222109 222109 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C144:99 scaffold449 SAMTools SNP 222178 222178 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold449 SAMTools SNP 222637 222637 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold449 SAMTools SNP 222665 222665 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold449 SAMTools SNP 222691 222691 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold449 SAMTools SNP 223083 223083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold449 SAMTools SNP 223510 223510 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold449 SAMTools SNP 224005 224005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold449 SAMTools SNP 224072 224072 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold449 SAMTools SNP 224961 224961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold449 SAMTools SNP 224982 224982 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.11%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold449 SAMTools SNP 225358 225358 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold449 SAMTools SNP 225360 225360 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold449 SAMTools SNP 226174 226174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold449 SAMTools SNP 232802 232802 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C33%3BMQ%3D49%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold449 SAMTools SNP 233936 233936 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C66%2C0:99 scaffold449 SAMTools SNP 238005 238005 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold449 SAMTools SNP 242623 242623 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold449 SAMTools SNP 242937 242937 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold449 SAMTools SNP 243002 243002 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold449 SAMTools SNP 249094 249094 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 249142 249142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 249149 249149 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C55%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 251479 251479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C34%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 252134 252134 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C3%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.67%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold449 SAMTools SNP 252583 252583 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold449 SAMTools SNP 252820 252820 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.15%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 253138 253138 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C41%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold449 SAMTools SNP 253156 253156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C24%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.37%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 253309 253309 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C45%2C0:87 scaffold449 SAMTools SNP 253663 253663 55.8 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C16%2C10%2C86%2C0%2C83:10 scaffold449 SAMTools SNP 254509 254509 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.029%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold449 SAMTools SNP 254528 254528 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C41%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0054%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold449 SAMTools SNP 255082 255082 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C10%2C86%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C4.6e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 258147 258147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C15%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 259175 259175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C56%2C56%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 259244 259244 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C135%2C7%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold449 SAMTools SNP 261118 261118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C36%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.09%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold449 SAMTools SNP 261475 261475 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C41%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold449 SAMTools SNP 262959 262959 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold449 SAMTools SNP 264210 264210 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.019%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C141:44 scaffold449 SAMTools SNP 264285 264285 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold450 SAMTools SNP 41802 41802 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold450 SAMTools SNP 41837 41837 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold450 SAMTools SNP 43347 43347 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold450 SAMTools SNP 102548 102548 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold450 SAMTools SNP 107559 107559 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold450 SAMTools SNP 107618 107618 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold450 SAMTools SNP 107672 107672 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold450 SAMTools SNP 109324 109324 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C16%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold450 SAMTools SNP 109813 109813 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold450 SAMTools SNP 114567 114567 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold450 SAMTools SNP 120324 120324 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold450 SAMTools SNP 176065 176065 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C144:99 scaffold450 SAMTools SNP 177164 177164 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C23%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.24%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold450 SAMTools SNP 177175 177175 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold450 SAMTools SNP 178932 178932 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold450 SAMTools SNP 246941 246941 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold451 SAMTools SNP 847 847 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold451 SAMTools SNP 883 883 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold451 SAMTools SNP 2107 2107 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold451 SAMTools SNP 2176 2176 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold451 SAMTools SNP 2504 2504 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold451 SAMTools SNP 48859 48859 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold451 SAMTools SNP 71444 71444 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold451 SAMTools SNP 73711 73711 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold451 SAMTools SNP 78979 78979 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 45319 45319 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 46591 46591 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold452 SAMTools SNP 48229 48229 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold452 SAMTools SNP 48546 48546 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold452 SAMTools SNP 52778 52778 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 54580 54580 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold452 SAMTools SNP 71905 71905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 72241 72241 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 72737 72737 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 75880 75880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold452 SAMTools SNP 75955 75955 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold452 SAMTools SNP 76875 76875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold452 SAMTools SNP 76904 76904 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold452 SAMTools SNP 77789 77789 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 77792 77792 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 79750 79750 182 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C1%2C7%3BMQ%3D49%3BFQ%3D185%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold452 SAMTools SNP 81359 81359 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold452 SAMTools SNP 82291 82291 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0043%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold452 SAMTools SNP 82426 82426 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C29%2C2%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.087%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold452 SAMTools SNP 82432 82432 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C29%2C2%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold452 SAMTools SNP 82820 82820 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C212:99 scaffold452 SAMTools SNP 82823 82823 220 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C24%2C0:45 scaffold452 SAMTools SNP 82927 82927 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C11%2C19%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.073%2C3.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold452 SAMTools SNP 82952 82952 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold452 SAMTools SNP 83036 83036 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C7.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C129:91 scaffold452 SAMTools SNP 83040 83040 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C64:67 scaffold452 SAMTools SNP 85932 85932 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold452 SAMTools SNP 85957 85957 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.029%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C220:91 scaffold452 SAMTools SNP 85984 85984 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C231:99 scaffold452 SAMTools SNP 87211 87211 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold452 SAMTools SNP 87773 87773 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C18%2C122%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1.4e-06%2C4e-32%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold452 SAMTools SNP 87776 87776 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C23%2C87%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D3.8e-05%2C5.4e-14%2C1%2C7.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold452 SAMTools SNP 87976 87976 18.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold452 SAMTools SNP 88871 88871 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0367%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C2%2C27%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.14%2C1%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold452 SAMTools SNP 88877 88877 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C10%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D0.39%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold452 SAMTools SNP 88991 88991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D562%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C399%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold452 SAMTools SNP 89023 89023 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold452 SAMTools SNP 89382 89382 43 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D677%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C47%2C38%2C72%2C0%2C69:16 scaffold452 SAMTools SNP 89388 89388 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D680%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C368%2C2%2C303%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.31%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold452 SAMTools SNP 89448 89448 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold452 SAMTools SNP 89595 89595 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold452 SAMTools SNP 89742 89742 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C255%2C0:99 scaffold452 SAMTools SNP 89809 89809 60.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold452 SAMTools SNP 91150 91150 73.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold452 SAMTools SNP 94059 94059 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C69%2C0:99 scaffold452 SAMTools SNP 94085 94085 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C14%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.5%2C0.022%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold452 SAMTools SNP 94361 94361 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C87%2C0:99 scaffold452 SAMTools SNP 94692 94692 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold452 SAMTools SNP 94715 94715 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C25%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C2.7e-45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C239:72 scaffold452 SAMTools SNP 94772 94772 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.1e-13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C102:66 scaffold452 SAMTools SNP 94791 94791 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold452 SAMTools SNP 94829 94829 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold452 SAMTools SNP 95272 95272 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.36%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold452 SAMTools SNP 95431 95431 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C168:99 scaffold452 SAMTools SNP 96790 96790 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold452 SAMTools SNP 96867 96867 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold452 SAMTools SNP 99021 99021 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 101254 101254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 101353 101353 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold452 SAMTools SNP 101355 101355 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold452 SAMTools SNP 101584 101584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold452 SAMTools SNP 101799 101799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold452 SAMTools SNP 101850 101850 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C16%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C96%2C0:99 scaffold452 SAMTools SNP 102341 102341 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C230:99 scaffold452 SAMTools SNP 102413 102413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold452 SAMTools SNP 102927 102927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-05%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 103514 103514 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.64%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold452 SAMTools SNP 105306 105306 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold452 SAMTools SNP 105765 105765 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.64%2C0.00031%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold452 SAMTools SNP 107431 107431 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold452 SAMTools SNP 107663 107663 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold452 SAMTools SNP 118811 118811 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 119060 119060 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 120873 120873 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C66%2C0:99 scaffold452 SAMTools SNP 121330 121330 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold452 SAMTools SNP 121948 121948 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C57%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold452 SAMTools SNP 122094 122094 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C44%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C205%2C0:99 scaffold452 SAMTools SNP 123500 123500 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold452 SAMTools SNP 123778 123778 10.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold452 SAMTools SNP 126199 126199 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold452 SAMTools SNP 126246 126246 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold452 SAMTools SNP 126256 126256 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold452 SAMTools SNP 127041 127041 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00049%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C124:48 scaffold452 SAMTools SNP 129600 129600 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 129606 129606 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold452 SAMTools SNP 129773 129773 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D47%3BFQ%3D86%3BPV4%3D0.18%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C113:99 scaffold452 SAMTools SNP 131007 131007 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C9%3BMQ%3D48%3BFQ%3D108%3BPV4%3D1%2C0.38%2C0.28%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold452 SAMTools SNP 131038 131038 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.29%2C0.033%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C228:99 scaffold452 SAMTools SNP 132345 132345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold452 SAMTools SNP 132402 132402 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold452 SAMTools SNP 132405 132405 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold452 SAMTools SNP 147892 147892 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold452 SAMTools SNP 150294 150294 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 151384 151384 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 151387 151387 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 151710 151710 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold452 SAMTools SNP 151953 151953 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold452 SAMTools SNP 151967 151967 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold453 SAMTools SNP 88 88 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 94 94 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 4592 4592 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold453 SAMTools SNP 5654 5654 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold453 SAMTools SNP 19674 19674 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold453 SAMTools SNP 19689 19689 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C18%2C0:33 scaffold453 SAMTools SNP 19799 19799 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold453 SAMTools SNP 20088 20088 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold453 SAMTools SNP 20153 20153 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold453 SAMTools SNP 21100 21100 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold453 SAMTools SNP 39645 39645 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C39%2C0:75 scaffold453 SAMTools SNP 41539 41539 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C21%2C0:35 scaffold453 SAMTools SNP 44503 44503 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold453 SAMTools SNP 44508 44508 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold453 SAMTools SNP 44547 44547 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold453 SAMTools SNP 47424 47424 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold453 SAMTools SNP 47911 47911 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold453 SAMTools SNP 47939 47939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold453 SAMTools SNP 48097 48097 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold453 SAMTools SNP 48258 48258 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold453 SAMTools SNP 48322 48322 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold453 SAMTools SNP 48679 48679 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold453 SAMTools SNP 48680 48680 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold453 SAMTools SNP 73039 73039 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold453 SAMTools SNP 89899 89899 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 98053 98053 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 98471 98471 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 98725 98725 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 139930 139930 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C10%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C244%2C0:99 scaffold453 SAMTools SNP 207395 207395 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 207405 207405 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.37%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold453 SAMTools SNP 207529 207529 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold453 SAMTools SNP 207658 207658 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold453 SAMTools SNP 207695 207695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C68%2C31%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.32%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold453 SAMTools SNP 210258 210258 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C86%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold453 SAMTools SNP 210268 210268 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C50%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold453 SAMTools SNP 233702 233702 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold453 SAMTools SNP 233708 233708 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold453 SAMTools SNP 234368 234368 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold453 SAMTools SNP 235389 235389 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold453 SAMTools SNP 235482 235482 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold453 SAMTools SNP 236032 236032 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold453 SAMTools SNP 236061 236061 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold453 SAMTools SNP 236453 236453 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.014%2C0.032%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold453 SAMTools SNP 236487 236487 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold453 SAMTools SNP 236496 236496 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold453 SAMTools SNP 236523 236523 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold453 SAMTools SNP 237584 237584 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold453 SAMTools SNP 238044 238044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold453 SAMTools SNP 238086 238086 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold453 SAMTools SNP 240286 240286 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 242682 242682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7768%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1325%2C4%2C1977%2C3902%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0%2C2.8e-17%2C1%2C1.4e-59;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold453 SAMTools SNP 243523 243523 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold453 SAMTools SNP 245927 245927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3390%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D695%2C1069%2C444%2C548%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0069%2C1%2C0.091%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold453 SAMTools SNP 245978 245978 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6017%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2866%2C78%2C1804%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-15%2C1%2C1%2C3.4e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold453 SAMTools SNP 246908 246908 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold453 SAMTools SNP 303779 303779 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold453 SAMTools SNP 303816 303816 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold453 SAMTools SNP 306400 306400 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C17:20 scaffold453 SAMTools SNP 309349 309349 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C34%2C10%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.66%2C1.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C131:58 scaffold454 SAMTools SNP 9664 9664 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 9665 9665 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 13670 13670 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold454 SAMTools SNP 14847 14847 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.51%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold454 SAMTools SNP 14958 14958 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.19%2C3.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C213:51 scaffold454 SAMTools SNP 15159 15159 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.52%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold454 SAMTools SNP 41358 41358 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold454 SAMTools SNP 60044 60044 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 75851 75851 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold454 SAMTools SNP 88663 88663 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 88694 88694 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 92075 92075 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold454 SAMTools SNP 92298 92298 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold454 SAMTools SNP 92926 92926 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 93358 93358 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 120868 120868 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 122302 122302 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C33%2C0:63 scaffold454 SAMTools SNP 122844 122844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C6%3BMQ%3D42%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold454 SAMTools SNP 123040 123040 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold454 SAMTools SNP 123085 123085 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C60%3BMQ%3D41%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C187%2C0:99 scaffold454 SAMTools SNP 123119 123119 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D21%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C72%2C0:99 scaffold454 SAMTools SNP 129802 129802 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold454 SAMTools SNP 130470 130470 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.2e-24%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold454 SAMTools SNP 130601 130601 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C81%2C0:99 scaffold454 SAMTools SNP 133266 133266 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 133304 133304 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold454 SAMTools SNP 133658 133658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 134772 134772 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold454 SAMTools SNP 135092 135092 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 135735 135735 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold454 SAMTools SNP 135751 135751 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C68:71 scaffold454 SAMTools SNP 135778 135778 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.19%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold454 SAMTools SNP 136103 136103 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 136211 136211 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold454 SAMTools SNP 136702 136702 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold454 SAMTools SNP 137388 137388 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold454 SAMTools SNP 137426 137426 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13%3BPV4%3D1%2C0.055%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C41:43 scaffold454 SAMTools SNP 137533 137533 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 137609 137609 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold454 SAMTools SNP 137767 137767 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold454 SAMTools SNP 137797 137797 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold454 SAMTools SNP 137809 137809 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold454 SAMTools SNP 137985 137985 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold454 SAMTools SNP 138009 138009 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold454 SAMTools SNP 138286 138286 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold454 SAMTools SNP 138660 138660 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold454 SAMTools SNP 138882 138882 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 138927 138927 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold454 SAMTools SNP 139132 139132 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold454 SAMTools SNP 139223 139223 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C242:69 scaffold454 SAMTools SNP 139426 139426 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold454 SAMTools SNP 139705 139705 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold454 SAMTools SNP 139744 139744 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 140777 140777 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 140804 140804 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 141505 141505 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 141515 141515 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 141549 141549 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 141699 141699 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 143018 143018 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold454 SAMTools SNP 146888 146888 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 146983 146983 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 146987 146987 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 147408 147408 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold454 SAMTools SNP 147417 147417 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold454 SAMTools SNP 147462 147462 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold454 SAMTools SNP 147501 147501 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold454 SAMTools SNP 147662 147662 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold454 SAMTools SNP 148577 148577 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold454 SAMTools SNP 149373 149373 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 149770 149770 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold454 SAMTools SNP 149794 149794 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 152029 152029 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 152074 152074 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 152257 152257 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 153912 153912 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold454 SAMTools SNP 153922 153922 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold454 SAMTools SNP 154333 154333 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold454 SAMTools SNP 154844 154844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 155112 155112 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 184320 184320 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold454 SAMTools SNP 184357 184357 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold454 SAMTools SNP 184502 184502 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 184511 184511 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold454 SAMTools SNP 185724 185724 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold454 SAMTools SNP 185749 185749 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold454 SAMTools SNP 185762 185762 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C95:46 scaffold454 SAMTools SNP 185878 185878 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold454 SAMTools SNP 185893 185893 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold454 SAMTools SNP 186212 186212 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold454 SAMTools SNP 205014 205014 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold454 SAMTools SNP 205352 205352 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 207981 207981 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold454 SAMTools SNP 208348 208348 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold454 SAMTools SNP 209563 209563 57.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C13%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C2:5 scaffold454 SAMTools SNP 209911 209911 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold454 SAMTools SNP 214930 214930 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold454 SAMTools SNP 215634 215634 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C111%2C0:99 scaffold454 SAMTools SNP 215981 215981 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold454 SAMTools SNP 218627 218627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C43%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold454 SAMTools SNP 219566 219566 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold454 SAMTools SNP 245217 245217 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 245250 245250 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold454 SAMTools SNP 245769 245769 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 246550 246550 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 246601 246601 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 246715 246715 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold454 SAMTools SNP 248091 248091 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold454 SAMTools SNP 248881 248881 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold454 SAMTools SNP 250123 250123 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.0001%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold454 SAMTools SNP 250131 250131 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold454 SAMTools SNP 250161 250161 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold454 SAMTools SNP 250175 250175 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 250313 250313 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C27%2C0:51 scaffold454 SAMTools SNP 250355 250355 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold454 SAMTools SNP 253346 253346 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold454 SAMTools SNP 253352 253352 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold454 SAMTools SNP 253796 253796 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.055%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold454 SAMTools SNP 253878 253878 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0045%2C1%2C1%2C4.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold454 SAMTools SNP 257941 257941 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.2%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold454 SAMTools SNP 271282 271282 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C63%2C0:99 scaffold454 SAMTools SNP 271295 271295 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C63%2C0:99 scaffold454 SAMTools SNP 271339 271339 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C19%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.62%2C5.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold454 SAMTools SNP 271441 271441 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C14%2C15%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.081%2C1.4e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold454 SAMTools SNP 271689 271689 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C3%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.37%2C1%2C2.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 271720 271720 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C74%2C13%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 275686 275686 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold454 SAMTools SNP 275696 275696 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C216:85 scaffold454 SAMTools SNP 281661 281661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3541%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D778%2C989%2C810%2C964%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 282044 282044 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5322%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2428%2C535%2C1979%2C337%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00067%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 282071 282071 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4794%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2021%2C665%2C1521%2C171%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 282148 282148 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4477%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2432%2C8%2C1515%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C6.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 282809 282809 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold454 SAMTools SNP 282846 282846 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C43%2C42%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C2.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold454 SAMTools SNP 282876 282876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold454 SAMTools SNP 284711 284711 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold454 SAMTools SNP 292973 292973 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold454 SAMTools SNP 293226 293226 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold456 SAMTools SNP 15297 15297 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold456 SAMTools SNP 16608 16608 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold456 SAMTools SNP 18252 18252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold456 SAMTools SNP 18282 18282 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold456 SAMTools SNP 18381 18381 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold456 SAMTools SNP 18393 18393 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold456 SAMTools SNP 22500 22500 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C27:30 scaffold456 SAMTools SNP 33449 33449 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 33947 33947 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 40873 40873 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold456 SAMTools SNP 43804 43804 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold456 SAMTools SNP 44127 44127 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold456 SAMTools SNP 44324 44324 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold456 SAMTools SNP 65250 65250 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold456 SAMTools SNP 65561 65561 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C111%2C0:99 scaffold456 SAMTools SNP 65835 65835 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold456 SAMTools SNP 66739 66739 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold456 SAMTools SNP 66748 66748 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold456 SAMTools SNP 67180 67180 96 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold456 SAMTools SNP 67330 67330 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold456 SAMTools SNP 67686 67686 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold456 SAMTools SNP 67803 67803 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C214:99 scaffold456 SAMTools SNP 67818 67818 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold456 SAMTools SNP 68252 68252 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C12%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold456 SAMTools SNP 69473 69473 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold456 SAMTools SNP 69491 69491 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold456 SAMTools SNP 69539 69539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold456 SAMTools SNP 71081 71081 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.61%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C232:99 scaffold456 SAMTools SNP 77671 77671 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold456 SAMTools SNP 77689 77689 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold456 SAMTools SNP 78335 78335 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold456 SAMTools SNP 79554 79554 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold456 SAMTools SNP 80890 80890 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 102002 102002 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 105484 105484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold456 SAMTools SNP 105492 105492 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.4%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold456 SAMTools SNP 109064 109064 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold456 SAMTools SNP 110469 110469 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold456 SAMTools SNP 111051 111051 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold456 SAMTools SNP 111435 111435 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold456 SAMTools SNP 111436 111436 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 135996 135996 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold456 SAMTools SNP 136208 136208 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold456 SAMTools SNP 147401 147401 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold456 SAMTools SNP 148665 148665 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold456 SAMTools SNP 149021 149021 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold456 SAMTools SNP 149520 149520 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold456 SAMTools SNP 149543 149543 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold456 SAMTools SNP 150646 150646 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 150696 150696 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold456 SAMTools SNP 154694 154694 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold456 SAMTools SNP 155037 155037 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C39%2C0:75 scaffold457 SAMTools SNP 175399 175399 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold457 SAMTools SNP 177350 177350 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold457 SAMTools SNP 177398 177398 21.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold457 SAMTools SNP 177467 177467 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold457 SAMTools SNP 177491 177491 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold457 SAMTools SNP 177754 177754 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold457 SAMTools SNP 180819 180819 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 200821 200821 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 213125 213125 23.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold457 SAMTools SNP 268512 268512 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 268552 268552 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold457 SAMTools SNP 269014 269014 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold457 SAMTools SNP 269059 269059 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C21%2C0:39 scaffold457 SAMTools SNP 269343 269343 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold457 SAMTools SNP 269403 269403 14.7 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold457 SAMTools SNP 272378 272378 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 278342 278342 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 290488 290488 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold457 SAMTools SNP 290527 290527 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C124:99 scaffold457 SAMTools SNP 291633 291633 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold457 SAMTools SNP 291645 291645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold457 SAMTools SNP 294336 294336 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 294364 294364 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C3%2C18%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.68%2C0.00025%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold457 SAMTools SNP 294860 294860 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.0027%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 296287 296287 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C20%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D6.6e-05%2C0.16%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold457 SAMTools SNP 296296 296296 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C20%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D5.6e-05%2C0.14%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold457 SAMTools SNP 296435 296435 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C248:76 scaffold457 SAMTools SNP 298693 298693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold457 SAMTools SNP 298752 298752 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold457 SAMTools SNP 298839 298839 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold457 SAMTools SNP 298847 298847 20.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold457 SAMTools SNP 298976 298976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold457 SAMTools SNP 298991 298991 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold457 SAMTools SNP 303456 303456 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C30%2C0:57 scaffold457 SAMTools SNP 320599 320599 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold457 SAMTools SNP 320713 320713 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C27%2C0:51 scaffold457 SAMTools SNP 322617 322617 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.082%2C5.7e-20%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold457 SAMTools SNP 326259 326259 50.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold457 SAMTools SNP 329419 329419 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C233:68 scaffold457 SAMTools SNP 330999 330999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C30%2C15%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.011%2C0.42%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold457 SAMTools SNP 331033 331033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C10%2C24%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold457 SAMTools SNP 331858 331858 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C5%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold457 SAMTools SNP 331885 331885 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.31%2C0.3%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold457 SAMTools SNP 339333 339333 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold457 SAMTools SNP 339347 339347 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold457 SAMTools SNP 339675 339675 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C9%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold457 SAMTools SNP 341498 341498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C30%2C35%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 341896 341896 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C19%2C115%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.25%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 345374 345374 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 346054 346054 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C21%2C40%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 346173 346173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C48%2C22%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 346185 346185 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 347068 347068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C34%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold457 SAMTools SNP 347515 347515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 347602 347602 68.1 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C81%2C63%2C115%2C0%2C94:33 scaffold457 SAMTools SNP 347685 347685 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold457 SAMTools SNP 348465 348465 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 348973 348973 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 348982 348982 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 349123 349123 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold457 SAMTools SNP 349155 349155 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold457 SAMTools SNP 349572 349572 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold457 SAMTools SNP 354349 354349 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C119:99 scaffold457 SAMTools SNP 354427 354427 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C14%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.24%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold457 SAMTools SNP 355783 355783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C6%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold457 SAMTools SNP 358098 358098 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C26%2C19%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.029%2C1.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold457 SAMTools SNP 358107 358107 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C24%2C29%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.044%2C9.5e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold457 SAMTools SNP 362397 362397 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C20%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C242:99 scaffold457 SAMTools SNP 370675 370675 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 59 59 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.027%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C60:63 scaffold458 SAMTools SNP 202 202 152 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C27%2C0:51 scaffold458 SAMTools SNP 704 704 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 6214 6214 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold458 SAMTools SNP 6410 6410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold458 SAMTools SNP 9178 9178 92.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold458 SAMTools SNP 10047 10047 88.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D39%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C8%2C0:14 scaffold458 SAMTools SNP 10075 10075 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C80:40 scaffold458 SAMTools SNP 12106 12106 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 12257 12257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 12481 12481 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold458 SAMTools SNP 12784 12784 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 13005 13005 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 13039 13039 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 15737 15737 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C27%2C0:51 scaffold458 SAMTools SNP 16176 16176 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 16563 16563 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.9%3BPV4%3D1%2C0.0089%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold458 SAMTools SNP 16886 16886 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold458 SAMTools SNP 17230 17230 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C81:43 scaffold458 SAMTools SNP 17672 17672 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 17802 17802 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold458 SAMTools SNP 17898 17898 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 17928 17928 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.017%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold458 SAMTools SNP 17960 17960 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold458 SAMTools SNP 18202 18202 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold458 SAMTools SNP 20103 20103 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold458 SAMTools SNP 24160 24160 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 24570 24570 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 24764 24764 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold458 SAMTools SNP 25285 25285 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold458 SAMTools SNP 55534 55534 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold458 SAMTools SNP 55689 55689 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold458 SAMTools SNP 55727 55727 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold458 SAMTools SNP 56402 56402 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C0%3BMQ%3D47%3BFQ%3D60%3BPV4%3D0.25%2C1%2C0.0068%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold458 SAMTools SNP 56662 56662 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C114%2C0:99 scaffold458 SAMTools SNP 62343 62343 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold458 SAMTools SNP 62498 62498 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C18%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C7%2C0:12 scaffold458 SAMTools SNP 62755 62755 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold458 SAMTools SNP 63422 63422 22.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold458 SAMTools SNP 71856 71856 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold458 SAMTools SNP 71865 71865 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold458 SAMTools SNP 71888 71888 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold458 SAMTools SNP 78201 78201 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.51%2C0.4%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C238:99 scaffold458 SAMTools SNP 78265 78265 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold458 SAMTools SNP 78926 78926 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold458 SAMTools SNP 78957 78957 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 79564 79564 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold458 SAMTools SNP 83052 83052 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold458 SAMTools SNP 83254 83254 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold458 SAMTools SNP 83424 83424 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C118:99 scaffold458 SAMTools SNP 83451 83451 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold458 SAMTools SNP 84752 84752 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 85037 85037 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold458 SAMTools SNP 85040 85040 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold458 SAMTools SNP 85235 85235 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold458 SAMTools SNP 86112 86112 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold458 SAMTools SNP 86212 86212 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00078%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C32:35 scaffold458 SAMTools SNP 87615 87615 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold458 SAMTools SNP 89510 89510 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C33%2C0:63 scaffold458 SAMTools SNP 89570 89570 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D15.7%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C53:45 scaffold458 SAMTools SNP 89791 89791 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold458 SAMTools SNP 90540 90540 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold458 SAMTools SNP 90678 90678 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold458 SAMTools SNP 91708 91708 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold458 SAMTools SNP 91723 91723 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0022%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold458 SAMTools SNP 92002 92002 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold458 SAMTools SNP 92601 92601 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold458 SAMTools SNP 92678 92678 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold458 SAMTools SNP 97120 97120 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold458 SAMTools SNP 97187 97187 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold458 SAMTools SNP 97782 97782 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold458 SAMTools SNP 97855 97855 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold458 SAMTools SNP 98222 98222 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold458 SAMTools SNP 98291 98291 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold458 SAMTools SNP 98439 98439 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold458 SAMTools SNP 98939 98939 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold458 SAMTools SNP 99460 99460 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold458 SAMTools SNP 99622 99622 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold458 SAMTools SNP 99632 99632 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold458 SAMTools SNP 100659 100659 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5.1e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C133:46 scaffold458 SAMTools SNP 100836 100836 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold458 SAMTools SNP 104889 104889 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold458 SAMTools SNP 107133 107133 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.39%2C5.6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold458 SAMTools SNP 109899 109899 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C51%2C0:99 scaffold458 SAMTools SNP 109949 109949 77.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold458 SAMTools SNP 110256 110256 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.29%2C9.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C213:77 scaffold458 SAMTools SNP 110323 110323 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold458 SAMTools SNP 110350 110350 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold458 SAMTools SNP 198106 198106 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold458 SAMTools SNP 208717 208717 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 208755 208755 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 208993 208993 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold458 SAMTools SNP 209144 209144 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 220595 220595 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold458 SAMTools SNP 221055 221055 42.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold458 SAMTools SNP 221402 221402 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold458 SAMTools SNP 231471 231471 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C29:32 scaffold458 SAMTools SNP 231517 231517 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C61%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold458 SAMTools SNP 232329 232329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C7%2C77%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 232403 232403 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold458 SAMTools SNP 233426 233426 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold458 SAMTools SNP 233475 233475 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold458 SAMTools SNP 234643 234643 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold458 SAMTools SNP 234679 234679 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 234767 234767 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 234810 234810 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 235348 235348 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D42.8%3BPV4%3D1%2C0.00019%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C71:73 scaffold458 SAMTools SNP 235629 235629 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold458 SAMTools SNP 236208 236208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold458 SAMTools SNP 236271 236271 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold458 SAMTools SNP 236272 236272 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold458 SAMTools SNP 238104 238104 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold458 SAMTools SNP 242645 242645 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C34%2C1%3BMQ%3D38%3BFQ%3D193%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C220:99 scaffold458 SAMTools SNP 243768 243768 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 248278 248278 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C26%2C16%3BMQ%3D27%3BFQ%3D189%3BPV4%3D0.67%2C0.11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold458 SAMTools SNP 248294 248294 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C10%2C12%3BMQ%3D30%3BFQ%3D163%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C205:99 scaffold458 SAMTools SNP 249001 249001 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C7%2C50%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.74%2C3e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold458 SAMTools SNP 249087 249087 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C76%2C1%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 249872 249872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C4%2C34%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.12%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold458 SAMTools SNP 249896 249896 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold458 SAMTools SNP 249907 249907 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold458 SAMTools SNP 251571 251571 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold458 SAMTools SNP 251987 251987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C15%2C40%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 252621 252621 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C42%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 252660 252660 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold458 SAMTools SNP 252901 252901 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold458 SAMTools SNP 253659 253659 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C91%2C6%2C8%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.098%2C0.026%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold458 SAMTools SNP 253680 253680 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 253702 253702 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.13%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold458 SAMTools SNP 253771 253771 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D7e-06%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C235:99 scaffold458 SAMTools SNP 253809 253809 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C43:46 scaffold458 SAMTools SNP 254439 254439 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.11%2C7.4e-20%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold458 SAMTools SNP 254481 254481 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C3%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.015%2C0.015%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C244:99 scaffold458 SAMTools SNP 254508 254508 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C18%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.022%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C242:99 scaffold458 SAMTools SNP 254913 254913 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold458 SAMTools SNP 254929 254929 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold458 SAMTools SNP 254968 254968 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold458 SAMTools SNP 255146 255146 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold458 SAMTools SNP 255882 255882 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 256111 256111 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.31%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold458 SAMTools SNP 256132 256132 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C69%2C6%2C11%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold458 SAMTools SNP 256465 256465 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold458 SAMTools SNP 256470 256470 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold458 SAMTools SNP 257034 257034 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold458 SAMTools SNP 257085 257085 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold458 SAMTools SNP 257434 257434 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold458 SAMTools SNP 257479 257479 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C21%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.12%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold458 SAMTools SNP 259633 259633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C3%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold458 SAMTools SNP 259704 259704 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold458 SAMTools SNP 259714 259714 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0081%2C2.1e-06%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold458 SAMTools SNP 259719 259719 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C14%2C47%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold458 SAMTools SNP 260165 260165 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C255%2C0:99 scaffold458 SAMTools SNP 260394 260394 81.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C18%2C0:33 scaffold458 SAMTools SNP 260408 260408 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C48%3BMQ%3D50%3BFQ%3D-249%3BPV4%3D0.45%2C6.5e-18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C222%2C0:99 scaffold458 SAMTools SNP 260564 260564 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C43%2C2%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold458 SAMTools SNP 260566 260566 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C23%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.3%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold458 SAMTools SNP 260588 260588 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C36%2C2%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold458 SAMTools SNP 260805 260805 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C6%2C12%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold458 SAMTools SNP 260835 260835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 261227 261227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 261383 261383 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 261708 261708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 261759 261759 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold458 SAMTools SNP 261762 261762 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold458 SAMTools SNP 262423 262423 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold458 SAMTools SNP 262436 262436 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C190%2C0:99 scaffold458 SAMTools SNP 262989 262989 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C64%2C2%2C16%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold458 SAMTools SNP 263053 263053 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold458 SAMTools SNP 263055 263055 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold458 SAMTools SNP 263115 263115 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold458 SAMTools SNP 263118 263118 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.02%2C1%2C1%2C5.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold458 SAMTools SNP 263121 263121 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 263643 263643 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C19%2C83%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 263727 263727 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C94%2C1%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C5.9e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 264237 264237 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold458 SAMTools SNP 264243 264243 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C24:27 scaffold458 SAMTools SNP 264285 264285 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold458 SAMTools SNP 264348 264348 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.011%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C73:76 scaffold458 SAMTools SNP 264363 264363 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold458 SAMTools SNP 264372 264372 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold458 SAMTools SNP 264727 264727 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold458 SAMTools SNP 264871 264871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 265144 265144 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C0%2C15%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.32%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold458 SAMTools SNP 265156 265156 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C41%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold458 SAMTools SNP 265237 265237 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C2%2C151%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 267886 267886 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold458 SAMTools SNP 268208 268208 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold458 SAMTools SNP 268320 268320 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold458 SAMTools SNP 268645 268645 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold458 SAMTools SNP 268670 268670 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold458 SAMTools SNP 270523 270523 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold458 SAMTools SNP 271346 271346 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold458 SAMTools SNP 271360 271360 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold458 SAMTools SNP 271390 271390 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold458 SAMTools SNP 273258 273258 27.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C6%2C0:10 scaffold458 SAMTools SNP 273293 273293 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold458 SAMTools SNP 281504 281504 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold458 SAMTools SNP 303828 303828 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.5e-16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C180:48 scaffold458 SAMTools SNP 304385 304385 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold458 SAMTools SNP 310135 310135 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.38%2C2.1e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C171:99 scaffold458 SAMTools SNP 311304 311304 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C105%2C0:99 scaffold458 SAMTools SNP 311618 311618 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C30%2C41%2C10%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C3.1e-103%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold458 SAMTools SNP 322879 322879 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C50%2C7%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-17%2C0.12%2C1%2C2.8e-26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 322915 322915 40.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0200%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C7:10 scaffold458 SAMTools SNP 323296 323296 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C79%2C3%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 323628 323628 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold458 SAMTools SNP 323634 323634 17.1 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold458 SAMTools SNP 324030 324030 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C39%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold458 SAMTools SNP 327180 327180 34.8 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold458 SAMTools SNP 327343 327343 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C173:93 scaffold458 SAMTools SNP 330970 330970 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 337110 337110 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold458 SAMTools SNP 337337 337337 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C0%2C10%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold458 SAMTools SNP 337367 337367 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 338400 338400 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.19%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold458 SAMTools SNP 338421 338421 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold458 SAMTools SNP 338680 338680 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold458 SAMTools SNP 343549 343549 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C88%2C2%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 343555 343555 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C91%2C2%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 343605 343605 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C25%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C248:99 scaffold458 SAMTools SNP 344117 344117 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 344645 344645 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold458 SAMTools SNP 345069 345069 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold458 SAMTools SNP 345084 345084 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C224:69 scaffold458 SAMTools SNP 345096 345096 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 345358 345358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold458 SAMTools SNP 345488 345488 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold458 SAMTools SNP 345506 345506 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold458 SAMTools SNP 345800 345800 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C1%2C12%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold458 SAMTools SNP 346334 346334 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold458 SAMTools SNP 346402 346402 47.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold458 SAMTools SNP 346460 346460 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.15%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold458 SAMTools SNP 346875 346875 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 347178 347178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold458 SAMTools SNP 348031 348031 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C0%2C34%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.53%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold458 SAMTools SNP 348464 348464 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold458 SAMTools SNP 348504 348504 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C2%2C24%2C4%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.034%2C0.23%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold458 SAMTools SNP 349156 349156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold458 SAMTools SNP 349420 349420 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold458 SAMTools SNP 349432 349432 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold458 SAMTools SNP 349556 349556 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold458 SAMTools SNP 351166 351166 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 351492 351492 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold458 SAMTools SNP 351552 351552 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C22%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.024%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold458 SAMTools SNP 353238 353238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.18%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold458 SAMTools SNP 353262 353262 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold458 SAMTools SNP 353314 353314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C30%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold458 SAMTools SNP 354623 354623 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C53%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold458 SAMTools SNP 355076 355076 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C44%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold458 SAMTools SNP 355739 355739 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C63%2C0%2C19%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.57%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold458 SAMTools SNP 355753 355753 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C56%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold458 SAMTools SNP 355795 355795 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C0.0096%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold458 SAMTools SNP 355851 355851 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold458 SAMTools SNP 355870 355870 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold458 SAMTools SNP 359938 359938 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold459 SAMTools SNP 1770 1770 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 1826 1826 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 1872 1872 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 16036 16036 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 19313 19313 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 28788 28788 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold459 SAMTools SNP 29162 29162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold459 SAMTools SNP 29564 29564 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold459 SAMTools SNP 29898 29898 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold459 SAMTools SNP 30168 30168 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C159:36 scaffold459 SAMTools SNP 30437 30437 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C102:36 scaffold459 SAMTools SNP 30737 30737 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.2e-14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C66:47 scaffold459 SAMTools SNP 31340 31340 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold459 SAMTools SNP 31535 31535 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold459 SAMTools SNP 31547 31547 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold459 SAMTools SNP 33938 33938 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C15%2C0:27 scaffold459 SAMTools SNP 34773 34773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold459 SAMTools SNP 35010 35010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 35044 35044 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.13%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold459 SAMTools SNP 35387 35387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C17%2C4%3BMQ%3D40%3BFQ%3D225%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 35433 35433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C2%3BMQ%3D28%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold459 SAMTools SNP 35925 35925 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C36%3BMQ%3D28%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold459 SAMTools SNP 36325 36325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 36390 36390 41.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold459 SAMTools SNP 36784 36784 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold459 SAMTools SNP 40931 40931 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold459 SAMTools SNP 41084 41084 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold459 SAMTools SNP 42319 42319 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold459 SAMTools SNP 42360 42360 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold459 SAMTools SNP 43117 43117 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold459 SAMTools SNP 43123 43123 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.29%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold459 SAMTools SNP 43125 43125 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold459 SAMTools SNP 43195 43195 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold459 SAMTools SNP 45634 45634 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold459 SAMTools SNP 48720 48720 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold459 SAMTools SNP 48738 48738 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold459 SAMTools SNP 63357 63357 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 63382 63382 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold459 SAMTools SNP 64695 64695 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold459 SAMTools SNP 67269 67269 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold459 SAMTools SNP 68357 68357 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold459 SAMTools SNP 74943 74943 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold459 SAMTools SNP 74946 74946 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold459 SAMTools SNP 77717 77717 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C222:68 scaffold459 SAMTools SNP 79855 79855 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 82469 82469 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.18%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold459 SAMTools SNP 82786 82786 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold459 SAMTools SNP 91976 91976 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C8%2C35%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 91999 91999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C13%2C45%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C0.055%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 92017 92017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C15%2C31%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 93601 93601 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold459 SAMTools SNP 93718 93718 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C84%2C10%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 95699 95699 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold459 SAMTools SNP 99740 99740 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold459 SAMTools SNP 99764 99764 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold459 SAMTools SNP 99765 99765 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 120937 120937 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold459 SAMTools SNP 120961 120961 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold459 SAMTools SNP 121407 121407 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold459 SAMTools SNP 135097 135097 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold459 SAMTools SNP 136177 136177 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold459 SAMTools SNP 136379 136379 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 144525 144525 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C24%2C0:45 scaffold459 SAMTools SNP 148587 148587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold459 SAMTools SNP 148629 148629 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.048%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold459 SAMTools SNP 148704 148704 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold459 SAMTools SNP 154050 154050 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D668%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D181%2C188%2C147%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 154059 154059 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D194%2C109%2C153%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 154985 154985 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D710%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C324%2C376%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold459 SAMTools SNP 155088 155088 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C202%2C34%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 155265 155265 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C86%2C41%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 156569 156569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C21%2C31%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 156605 156605 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C33%2C103%2C11%3BMQ%3D48%3BFQ%3D219%3BPV4%3D0.019%2C1.1e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold459 SAMTools SNP 156713 156713 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C169%2C62%2C93%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0014%2C0.38%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 156716 156716 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C116%2C51%2C160%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 158862 158862 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C9%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D5.6e-07%2C1%2C1%2C6.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold459 SAMTools SNP 159764 159764 29.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0233%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.021%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C9:12 scaffold459 SAMTools SNP 160133 160133 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C17%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold459 SAMTools SNP 160181 160181 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold459 SAMTools SNP 160251 160251 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C144%2C64%2C14%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D2.9e-36%2C3.3e-106%2C0.084%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold459 SAMTools SNP 160267 160267 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C174%2C57%2C58%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1.6e-25%2C2.9e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold459 SAMTools SNP 160311 160311 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C87%2C1%2C10%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C177:70 scaffold459 SAMTools SNP 160347 160347 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C81%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold459 SAMTools SNP 163029 163029 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold459 SAMTools SNP 167565 167565 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold459 SAMTools SNP 172263 172263 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 172592 172592 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold459 SAMTools SNP 172887 172887 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 172904 172904 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 173533 173533 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold459 SAMTools SNP 174394 174394 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold459 SAMTools SNP 175693 175693 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 177412 177412 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold459 SAMTools SNP 177443 177443 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold459 SAMTools SNP 177678 177678 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold459 SAMTools SNP 177769 177769 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 183956 183956 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold459 SAMTools SNP 184004 184004 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold459 SAMTools SNP 184476 184476 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold459 SAMTools SNP 184479 184479 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold459 SAMTools SNP 184518 184518 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold459 SAMTools SNP 185123 185123 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.14%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold459 SAMTools SNP 185563 185563 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C62:65 scaffold459 SAMTools SNP 185701 185701 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold459 SAMTools SNP 185958 185958 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold459 SAMTools SNP 186617 186617 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold459 SAMTools SNP 186623 186623 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C9%2C0:16 scaffold459 SAMTools SNP 187067 187067 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 188262 188262 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold459 SAMTools SNP 188773 188773 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold459 SAMTools SNP 189128 189128 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 189860 189860 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold459 SAMTools SNP 201939 201939 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold459 SAMTools SNP 202163 202163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold459 SAMTools SNP 202477 202477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold459 SAMTools SNP 202498 202498 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C254:99 scaffold459 SAMTools SNP 202996 202996 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold459 SAMTools SNP 203590 203590 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold459 SAMTools SNP 203641 203641 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold459 SAMTools SNP 203988 203988 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.22%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C185:99 scaffold459 SAMTools SNP 204064 204064 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold459 SAMTools SNP 205314 205314 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold459 SAMTools SNP 205357 205357 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.0012%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold459 SAMTools SNP 205365 205365 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold459 SAMTools SNP 206097 206097 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold459 SAMTools SNP 206434 206434 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold459 SAMTools SNP 206449 206449 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold459 SAMTools SNP 206620 206620 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold459 SAMTools SNP 206686 206686 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold459 SAMTools SNP 207175 207175 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold459 SAMTools SNP 207424 207424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold459 SAMTools SNP 207463 207463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold459 SAMTools SNP 207752 207752 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 207925 207925 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 208384 208384 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold459 SAMTools SNP 208426 208426 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold459 SAMTools SNP 208447 208447 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.005%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 208943 208943 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 209424 209424 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C1%2C5%3BMQ%3D49%3BFQ%3D89%3BPV4%3D0.55%2C0.48%2C0.013%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold459 SAMTools SNP 209444 209444 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C23%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.44%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 209846 209846 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 209854 209854 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C112:54 scaffold459 SAMTools SNP 210839 210839 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.61%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold459 SAMTools SNP 210965 210965 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C42%2C0:81 scaffold459 SAMTools SNP 210975 210975 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold459 SAMTools SNP 211470 211470 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold459 SAMTools SNP 212070 212070 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold459 SAMTools SNP 212691 212691 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold459 SAMTools SNP 212817 212817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C9%2C8%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C0.34%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 212971 212971 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C6%2C5%3BMQ%3D40%3BFQ%3D151%3BPV4%3D0.7%2C1%2C0.24%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold459 SAMTools SNP 213970 213970 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold459 SAMTools SNP 213989 213989 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold459 SAMTools SNP 214067 214067 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold459 SAMTools SNP 214074 214074 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold459 SAMTools SNP 214204 214204 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold459 SAMTools SNP 214303 214303 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold459 SAMTools SNP 214659 214659 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold459 SAMTools SNP 214705 214705 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold459 SAMTools SNP 214950 214950 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 216183 216183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold459 SAMTools SNP 216240 216240 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold459 SAMTools SNP 217051 217051 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C48%2C7%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold459 SAMTools SNP 217093 217093 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C70%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold459 SAMTools SNP 217382 217382 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.071%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold459 SAMTools SNP 242035 242035 53.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold459 SAMTools SNP 245672 245672 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C199:31 scaffold459 SAMTools SNP 245683 245683 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold459 SAMTools SNP 248943 248943 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold459 SAMTools SNP 282463 282463 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.065%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C133:28 scaffold459 SAMTools SNP 283231 283231 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold459 SAMTools SNP 283402 283402 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold459 SAMTools SNP 285271 285271 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C4.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C14:17 scaffold459 SAMTools SNP 285535 285535 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C36%2C0:69 scaffold459 SAMTools SNP 285625 285625 7.39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold459 SAMTools SNP 285841 285841 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold459 SAMTools SNP 286034 286034 207 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C27%2C0:51 scaffold459 SAMTools SNP 287159 287159 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold459 SAMTools SNP 287254 287254 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1.3e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C163:99 scaffold459 SAMTools SNP 288190 288190 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold459 SAMTools SNP 288216 288216 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold459 SAMTools SNP 288530 288530 39.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold459 SAMTools SNP 331183 331183 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 331391 331391 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 331424 331424 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 332015 332015 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold459 SAMTools SNP 332102 332102 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold459 SAMTools SNP 336363 336363 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold459 SAMTools SNP 336787 336787 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold459 SAMTools SNP 337382 337382 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold459 SAMTools SNP 337440 337440 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C111%2C0:99 scaffold459 SAMTools SNP 365677 365677 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold459 SAMTools SNP 365822 365822 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold459 SAMTools SNP 404766 404766 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.009%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold459 SAMTools SNP 404859 404859 50.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C6.1e-11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C14:17 scaffold459 SAMTools SNP 405815 405815 26.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold459 SAMTools SNP 406400 406400 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold459 SAMTools SNP 430522 430522 20.1 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold459 SAMTools SNP 433236 433236 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold461 SAMTools SNP 9346 9346 157 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C33%2C0:63 scaffold461 SAMTools SNP 9430 9430 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D58.5%3BPV4%3D0.27%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C95:88 scaffold461 SAMTools SNP 47027 47027 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold461 SAMTools SNP 47357 47357 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold461 SAMTools SNP 52573 52573 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 52590 52590 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold461 SAMTools SNP 52641 52641 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 54165 54165 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold461 SAMTools SNP 54186 54186 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold461 SAMTools SNP 54547 54547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold461 SAMTools SNP 54663 54663 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold461 SAMTools SNP 73089 73089 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold461 SAMTools SNP 149074 149074 59.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold461 SAMTools SNP 149192 149192 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold461 SAMTools SNP 149203 149203 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold461 SAMTools SNP 150811 150811 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold461 SAMTools SNP 151307 151307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C45%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold461 SAMTools SNP 205459 205459 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold461 SAMTools SNP 205748 205748 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold461 SAMTools SNP 214136 214136 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C9%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold461 SAMTools SNP 216334 216334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold461 SAMTools SNP 216526 216526 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 216589 216589 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 216621 216621 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 216795 216795 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold461 SAMTools SNP 216803 216803 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 217062 217062 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 305216 305216 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold461 SAMTools SNP 305372 305372 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 308211 308211 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 308260 308260 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 309052 309052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 316335 316335 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 328330 328330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold461 SAMTools SNP 328332 328332 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold461 SAMTools SNP 329313 329313 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 361408 361408 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold461 SAMTools SNP 361940 361940 10.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold461 SAMTools SNP 369470 369470 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 369487 369487 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold461 SAMTools SNP 369511 369511 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C184:99 scaffold461 SAMTools SNP 369897 369897 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold461 SAMTools SNP 369967 369967 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold461 SAMTools SNP 370116 370116 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold461 SAMTools SNP 427030 427030 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold461 SAMTools SNP 429812 429812 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold461 SAMTools SNP 435756 435756 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold461 SAMTools SNP 436629 436629 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold461 SAMTools SNP 436785 436785 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 437760 437760 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold461 SAMTools SNP 440376 440376 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold461 SAMTools SNP 490960 490960 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C33%2C0:63 scaffold461 SAMTools SNP 491105 491105 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold461 SAMTools SNP 497677 497677 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold461 SAMTools SNP 498076 498076 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold461 SAMTools SNP 499177 499177 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold461 SAMTools SNP 499197 499197 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold461 SAMTools SNP 503396 503396 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold461 SAMTools SNP 529290 529290 99.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold461 SAMTools SNP 529294 529294 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.075%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C162:39 scaffold461 SAMTools SNP 529536 529536 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold461 SAMTools SNP 531046 531046 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold461 SAMTools SNP 531049 531049 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold461 SAMTools SNP 567268 567268 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold461 SAMTools SNP 567277 567277 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold461 SAMTools SNP 567328 567328 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold461 SAMTools SNP 568243 568243 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold461 SAMTools SNP 568359 568359 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold461 SAMTools SNP 568412 568412 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold461 SAMTools SNP 572176 572176 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold461 SAMTools SNP 572223 572223 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold461 SAMTools SNP 572274 572274 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.047%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C93:96 scaffold461 SAMTools SNP 575898 575898 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold461 SAMTools SNP 577453 577453 42.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold461 SAMTools SNP 579814 579814 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold461 SAMTools SNP 579837 579837 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold461 SAMTools SNP 580369 580369 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold461 SAMTools SNP 587809 587809 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold461 SAMTools SNP 588128 588128 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold461 SAMTools SNP 602047 602047 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold463 SAMTools SNP 809 809 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold463 SAMTools SNP 908 908 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold463 SAMTools SNP 928 928 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold463 SAMTools SNP 16138 16138 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold463 SAMTools SNP 16183 16183 94.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold463 SAMTools SNP 30062 30062 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold463 SAMTools SNP 30123 30123 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold463 SAMTools SNP 30534 30534 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold463 SAMTools SNP 30561 30561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold463 SAMTools SNP 31004 31004 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold463 SAMTools SNP 31301 31301 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C27%2C0:51 scaffold463 SAMTools SNP 33211 33211 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold463 SAMTools SNP 34314 34314 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.088%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold463 SAMTools SNP 36887 36887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C7%3BMQ%3D49%3BFQ%3D95%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold463 SAMTools SNP 38236 38236 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C0%3BMQ%3D49%3BFQ%3D19.1%3BPV4%3D0.069%2C1%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold463 SAMTools SNP 38314 38314 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C18%2C0:33 scaffold463 SAMTools SNP 38347 38347 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C5%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold463 SAMTools SNP 38370 38370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C39%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold463 SAMTools SNP 40028 40028 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.14%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold463 SAMTools SNP 40116 40116 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold463 SAMTools SNP 41050 41050 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.15%2C0.41%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold463 SAMTools SNP 44856 44856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold463 SAMTools SNP 45363 45363 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C215:99 scaffold463 SAMTools SNP 45670 45670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold463 SAMTools SNP 45682 45682 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold463 SAMTools SNP 45826 45826 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold463 SAMTools SNP 45856 45856 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold463 SAMTools SNP 46261 46261 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold463 SAMTools SNP 48367 48367 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold463 SAMTools SNP 48859 48859 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold463 SAMTools SNP 48894 48894 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold463 SAMTools SNP 50036 50036 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0084%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold463 SAMTools SNP 50039 50039 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0084%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold463 SAMTools SNP 50051 50051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold463 SAMTools SNP 50156 50156 136 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C249:99 scaffold463 SAMTools SNP 50159 50159 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.082%2C2.5e-07%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold463 SAMTools SNP 50174 50174 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold463 SAMTools SNP 51032 51032 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C13%3BMQ%3D49%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold463 SAMTools SNP 53292 53292 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C21%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.38%2C2.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold463 SAMTools SNP 53373 53373 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.3%2C0.41%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold463 SAMTools SNP 53953 53953 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C43%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold463 SAMTools SNP 54656 54656 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C57%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold463 SAMTools SNP 55221 55221 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C43%2C19%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.00016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold463 SAMTools SNP 56639 56639 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C24%2C0:45 scaffold463 SAMTools SNP 57133 57133 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold463 SAMTools SNP 57815 57815 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold463 SAMTools SNP 78446 78446 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.25%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C82:85 scaffold463 SAMTools SNP 78843 78843 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.38%2C0.018%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C235:37 scaffold463 SAMTools SNP 81460 81460 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold463 SAMTools SNP 81635 81635 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold463 SAMTools SNP 81660 81660 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold465 SAMTools SNP 10790 10790 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold465 SAMTools SNP 11355 11355 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold465 SAMTools SNP 11424 11424 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold465 SAMTools SNP 13131 13131 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold465 SAMTools SNP 20642 20642 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold465 SAMTools SNP 22032 22032 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.13%2C0.0013%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold465 SAMTools SNP 24737 24737 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C43%2C2%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold465 SAMTools SNP 24777 24777 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C39%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C2.3e-08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C19%2C0:31 scaffold465 SAMTools SNP 27322 27322 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold465 SAMTools SNP 29535 29535 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold465 SAMTools SNP 29779 29779 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold465 SAMTools SNP 29831 29831 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C23%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.022%2C4.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold465 SAMTools SNP 42339 42339 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C32:35 scaffold467 SAMTools SNP 49931 49931 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C151:99 scaffold467 SAMTools SNP 50207 50207 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C39%2C0:75 scaffold467 SAMTools SNP 50693 50693 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.00056%2C1%2C1%2C1.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold467 SAMTools SNP 50720 50720 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C17%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold467 SAMTools SNP 51133 51133 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold467 SAMTools SNP 51143 51143 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold467 SAMTools SNP 51164 51164 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.00058%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 51674 51674 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 51689 51689 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C30%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold467 SAMTools SNP 51728 51728 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold467 SAMTools SNP 51791 51791 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.31%2C0.006%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold467 SAMTools SNP 52003 52003 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C56%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold467 SAMTools SNP 54903 54903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1031%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D337%2C144%2C350%2C199%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 58320 58320 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold467 SAMTools SNP 59268 59268 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold467 SAMTools SNP 59606 59606 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold467 SAMTools SNP 59699 59699 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.25%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C177:60 scaffold467 SAMTools SNP 59762 59762 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold467 SAMTools SNP 60162 60162 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold467 SAMTools SNP 60714 60714 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.035%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold467 SAMTools SNP 60717 60717 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold467 SAMTools SNP 60759 60759 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold467 SAMTools SNP 60806 60806 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold467 SAMTools SNP 60922 60922 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold467 SAMTools SNP 61019 61019 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold467 SAMTools SNP 62986 62986 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C3%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.014%2C0.09%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold467 SAMTools SNP 63021 63021 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C17%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.37%2C3.6e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold467 SAMTools SNP 63383 63383 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold467 SAMTools SNP 63387 63387 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold467 SAMTools SNP 63403 63403 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 63543 63543 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C4%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold467 SAMTools SNP 63549 63549 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C7%2C15%2C2%3BMQ%3D49%3BFQ%3D150%3BPV4%3D0.66%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold467 SAMTools SNP 63897 63897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C35%2C114%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 64268 64268 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C88%2C26%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.4%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 64315 64315 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C162%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold467 SAMTools SNP 64450 64450 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C70%2C5%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 65245 65245 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold467 SAMTools SNP 65267 65267 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold467 SAMTools SNP 68105 68105 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold467 SAMTools SNP 68313 68313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C97%2C11%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold467 SAMTools SNP 68739 68739 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold467 SAMTools SNP 69257 69257 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold467 SAMTools SNP 72448 72448 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold467 SAMTools SNP 73190 73190 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold467 SAMTools SNP 73447 73447 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.3%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold467 SAMTools SNP 73614 73614 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold467 SAMTools SNP 73677 73677 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C7%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.75%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold467 SAMTools SNP 74097 74097 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C23%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.38%2C0.0041%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C253:99 scaffold467 SAMTools SNP 74143 74143 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C17%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C162:99 scaffold467 SAMTools SNP 76772 76772 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold467 SAMTools SNP 81892 81892 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold467 SAMTools SNP 86304 86304 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold469 SAMTools SNP 5132 5132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C33%2C27%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 5171 5171 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 5330 5330 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C34%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C233:85 scaffold469 SAMTools SNP 29933 29933 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.048%2C8.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C182:42 scaffold469 SAMTools SNP 30817 30817 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 32178 32178 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold469 SAMTools SNP 32780 32780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold469 SAMTools SNP 32842 32842 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 32859 32859 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold469 SAMTools SNP 33193 33193 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 33247 33247 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 33767 33767 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 33842 33842 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 34845 34845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 36070 36070 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold469 SAMTools SNP 36103 36103 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.057%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold469 SAMTools SNP 36208 36208 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold469 SAMTools SNP 36232 36232 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold469 SAMTools SNP 38284 38284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 38655 38655 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold469 SAMTools SNP 38661 38661 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold469 SAMTools SNP 38727 38727 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C26%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C4.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold469 SAMTools SNP 38841 38841 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 38844 38844 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 39544 39544 197 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.15%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold469 SAMTools SNP 39756 39756 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 40679 40679 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 43614 43614 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 43754 43754 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold469 SAMTools SNP 45155 45155 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.29%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold469 SAMTools SNP 45230 45230 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold469 SAMTools SNP 45569 45569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C20%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 46934 46934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 47135 47135 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold469 SAMTools SNP 48424 48424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 48472 48472 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold469 SAMTools SNP 48481 48481 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 48484 48484 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold469 SAMTools SNP 48520 48520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 49257 49257 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.17%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 49324 49324 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C127:99 scaffold469 SAMTools SNP 49886 49886 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold469 SAMTools SNP 49946 49946 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.24%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold469 SAMTools SNP 50318 50318 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.029%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold469 SAMTools SNP 50324 50324 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C14%2C28%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 51323 51323 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold469 SAMTools SNP 51971 51971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold469 SAMTools SNP 52008 52008 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold469 SAMTools SNP 52110 52110 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold469 SAMTools SNP 54203 54203 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 54408 54408 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C12%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.13%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 54441 54441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C17%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 56036 56036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C37%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 56090 56090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C22%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold469 SAMTools SNP 60691 60691 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.082%2C9.2e-06%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold469 SAMTools SNP 62552 62552 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.19%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold469 SAMTools SNP 62585 62585 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 63171 63171 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold469 SAMTools SNP 63388 63388 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C191:74 scaffold469 SAMTools SNP 64124 64124 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.45%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold469 SAMTools SNP 74254 74254 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C9%2C28%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.054%2C3.8e-34%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C239:99 scaffold469 SAMTools SNP 74304 74304 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C15%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.3%2C8.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold469 SAMTools SNP 74459 74459 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold469 SAMTools SNP 76641 76641 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 76853 76853 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.0085%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold469 SAMTools SNP 79592 79592 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold469 SAMTools SNP 81214 81214 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 81531 81531 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C34%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 81582 81582 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 81800 81800 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C11%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0076%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold469 SAMTools SNP 81803 81803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold469 SAMTools SNP 81893 81893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C4%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold469 SAMTools SNP 82352 82352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C42%2C37%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 82358 82358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 82376 82376 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 83148 83148 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C78%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C0.00038%2C1%2C4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 83166 83166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 83211 83211 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C141%2C146%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 83223 83223 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C148%2C87%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.9e-25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold469 SAMTools SNP 84107 84107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C108%2C7%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 84142 84142 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C122%2C0%2C24%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold469 SAMTools SNP 86039 86039 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold469 SAMTools SNP 86105 86105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C16%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.56%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold469 SAMTools SNP 86153 86153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold469 SAMTools SNP 86549 86549 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold469 SAMTools SNP 88775 88775 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 88859 88859 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.091%2C0.032%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C201:99 scaffold469 SAMTools SNP 88877 88877 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C210:99 scaffold469 SAMTools SNP 89143 89143 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold469 SAMTools SNP 89792 89792 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 89809 89809 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 90203 90203 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold469 SAMTools SNP 90333 90333 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold469 SAMTools SNP 90339 90339 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold469 SAMTools SNP 90788 90788 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 90799 90799 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold469 SAMTools SNP 90818 90818 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold469 SAMTools SNP 91032 91032 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold469 SAMTools SNP 91070 91070 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C184:49 scaffold469 SAMTools SNP 91134 91134 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.45%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold469 SAMTools SNP 91552 91552 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold469 SAMTools SNP 91576 91576 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold469 SAMTools SNP 91594 91594 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.058%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold469 SAMTools SNP 92233 92233 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold469 SAMTools SNP 92558 92558 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold469 SAMTools SNP 92570 92570 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold469 SAMTools SNP 93009 93009 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold469 SAMTools SNP 101230 101230 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C56:59 scaffold469 SAMTools SNP 101248 101248 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D5.46%3BPV4%3D1%2C1.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C66:30 scaffold469 SAMTools SNP 101354 101354 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C39%2C0:75 scaffold469 SAMTools SNP 103894 103894 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C30%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold469 SAMTools SNP 103908 103908 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C34%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold469 SAMTools SNP 106927 106927 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C9%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.055%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C74:77 scaffold469 SAMTools SNP 106964 106964 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold469 SAMTools SNP 107357 107357 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C24%2C0:45 scaffold469 SAMTools SNP 107828 107828 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 108212 108212 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C36%2C10%3BMQ%3D34%3BFQ%3D24%3BPV4%3D0.062%2C2.6e-46%2C0.15%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C210:54 scaffold469 SAMTools SNP 108343 108343 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C18%2C0:33 scaffold469 SAMTools SNP 109560 109560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C48%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold469 SAMTools SNP 109575 109575 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C31%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold469 SAMTools SNP 109633 109633 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C248:99 scaffold469 SAMTools SNP 178545 178545 73.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold469 SAMTools SNP 178756 178756 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D47%3BFQ%3D8.65%3BPV4%3D0.012%2C9.4e-13%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C102:36 scaffold469 SAMTools SNP 179039 179039 13.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C18%2C0:27 scaffold469 SAMTools SNP 277030 277030 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D32%3BFQ%3D42.6%3BPV4%3D1%2C0.027%2C0.33%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C71:73 scaffold469 SAMTools SNP 278403 278403 29.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold469 SAMTools SNP 279260 279260 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold469 SAMTools SNP 279721 279721 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 279761 279761 37.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold469 SAMTools SNP 279945 279945 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold469 SAMTools SNP 283082 283082 53.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C17:20 scaffold469 SAMTools SNP 283087 283087 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 284835 284835 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 290721 290721 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 310155 310155 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 310200 310200 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold469 SAMTools SNP 349376 349376 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.32%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C69:72 scaffold469 SAMTools SNP 351158 351158 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C2%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold469 SAMTools SNP 351316 351316 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C38%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold469 SAMTools SNP 351661 351661 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C27%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold469 SAMTools SNP 351682 351682 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold469 SAMTools SNP 351691 351691 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold469 SAMTools SNP 351739 351739 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 352354 352354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold469 SAMTools SNP 353194 353194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold469 SAMTools SNP 353457 353457 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 353532 353532 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 353589 353589 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold469 SAMTools SNP 354008 354008 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold469 SAMTools SNP 354120 354120 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C51%2C0:94 scaffold469 SAMTools SNP 355057 355057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C229%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 355074 355074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C64%2C1%2C160%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 355093 355093 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C108:77 scaffold469 SAMTools SNP 355294 355294 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.36%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold469 SAMTools SNP 356475 356475 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 359067 359067 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 359094 359094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C16%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold469 SAMTools SNP 359856 359856 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C2%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.24%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold469 SAMTools SNP 359975 359975 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.52%2C0.015%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold469 SAMTools SNP 359987 359987 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.47%2C0.2%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold469 SAMTools SNP 360038 360038 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.09%2C0.19%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold469 SAMTools SNP 360712 360712 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold469 SAMTools SNP 360715 360715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold469 SAMTools SNP 362907 362907 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 362940 362940 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C0%2C20%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0021%2C7.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold469 SAMTools SNP 363243 363243 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 363255 363255 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 363279 363279 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 364100 364100 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0071%2C0.13%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold469 SAMTools SNP 364450 364450 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C17%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold469 SAMTools SNP 364516 364516 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 364683 364683 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 364908 364908 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C9%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 364959 364959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C46%2C9%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 365176 365176 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.015%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold469 SAMTools SNP 365768 365768 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold469 SAMTools SNP 366164 366164 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.053%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C186:99 scaffold469 SAMTools SNP 366182 366182 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.094%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold469 SAMTools SNP 369782 369782 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C41%2C0%3BMQ%3D47%3BFQ%3D181%3BPV4%3D0.23%2C1.1e-08%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold469 SAMTools SNP 369800 369800 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C7%2C0%3BMQ%3D45%3BFQ%3D40%3BPV4%3D1%2C0.051%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C252:70 scaffold469 SAMTools SNP 410115 410115 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00017%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C138:60 scaffold469 SAMTools SNP 411759 411759 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C64%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D3.6e-07%2C4.5e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold469 SAMTools SNP 412350 412350 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C32%2C104%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 412401 412401 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C73%2C42%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C7.2e-08%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 412455 412455 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D756%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D352%2C122%2C186%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 412869 412869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C244%2C19%2C149%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 412890 412890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C352%2C0%2C183%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 414162 414162 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C158%2C52%2C15%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.00065%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold469 SAMTools SNP 419857 419857 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 419897 419897 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold469 SAMTools SNP 420055 420055 21.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold469 SAMTools SNP 420131 420131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C414%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 420194 420194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C498%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 420227 420227 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C131%2C51%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 420628 420628 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 420712 420712 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C38%2C50%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 420731 420731 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C111%2C62%2C101%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.83%2C4.4e-08%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 420751 420751 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C128%2C93%2C147%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C0.18%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 429473 429473 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C184%2C1%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 432764 432764 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold469 SAMTools SNP 438192 438192 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C11%3BMQ%3D47%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold469 SAMTools SNP 438201 438201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C11%3BMQ%3D47%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold469 SAMTools SNP 438267 438267 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold469 SAMTools SNP 438269 438269 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold469 SAMTools SNP 438979 438979 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 439060 439060 6.98 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold469 SAMTools SNP 457919 457919 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 471398 471398 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold469 SAMTools SNP 471702 471702 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 482820 482820 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C57%2C0:99 scaffold469 SAMTools SNP 482885 482885 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C48%2C0:93 scaffold469 SAMTools SNP 482955 482955 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C8%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.35%2C0.00067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C42%2C0:81 scaffold469 SAMTools SNP 483018 483018 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C75%2C0:99 scaffold469 SAMTools SNP 483057 483057 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.092%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C21:24 scaffold469 SAMTools SNP 496583 496583 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 496619 496619 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold469 SAMTools SNP 496630 496630 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold469 SAMTools SNP 499565 499565 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.68%2C0.019%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold469 SAMTools SNP 505030 505030 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold469 SAMTools SNP 505036 505036 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.17%2C0.00027%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C193:81 scaffold469 SAMTools SNP 505096 505096 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C0.091%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold469 SAMTools SNP 506101 506101 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C18%2C0:33 scaffold469 SAMTools SNP 569251 569251 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold469 SAMTools SNP 569355 569355 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold469 SAMTools SNP 591955 591955 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 594031 594031 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 594438 594438 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 597377 597377 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold469 SAMTools SNP 597406 597406 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold469 SAMTools SNP 598271 598271 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold469 SAMTools SNP 598294 598294 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 602133 602133 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 602160 602160 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 603151 603151 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold469 SAMTools SNP 603187 603187 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 603717 603717 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 603771 603771 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C27%2C0:51 scaffold469 SAMTools SNP 603801 603801 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 603825 603825 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold469 SAMTools SNP 603844 603844 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold469 SAMTools SNP 604043 604043 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold469 SAMTools SNP 604614 604614 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold469 SAMTools SNP 604626 604626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold469 SAMTools SNP 604844 604844 113 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold469 SAMTools SNP 605685 605685 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold469 SAMTools SNP 606338 606338 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold469 SAMTools SNP 606366 606366 207 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold469 SAMTools SNP 606828 606828 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 606849 606849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold469 SAMTools SNP 606873 606873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 607395 607395 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C222:99 scaffold469 SAMTools SNP 607778 607778 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold469 SAMTools SNP 607843 607843 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 608315 608315 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.46%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C194:73 scaffold469 SAMTools SNP 608602 608602 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.51%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold469 SAMTools SNP 612219 612219 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D35%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold469 SAMTools SNP 613255 613255 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C18%2C36%2C21%3BMQ%3D27%3BFQ%3D225%3BPV4%3D0.13%2C1%2C0.35%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 615171 615171 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C24%2C0:45 scaffold469 SAMTools SNP 615196 615196 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 615406 615406 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C20%2C45%3BMQ%3D23%3BFQ%3D125%3BPV4%3D0.4%2C1%2C0.053%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C154:99 scaffold469 SAMTools SNP 616927 616927 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D11%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C66%2C0:65 scaffold469 SAMTools SNP 617728 617728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 617729 617729 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 630675 630675 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 631680 631680 14.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D15%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C16%2C0:25 scaffold469 SAMTools SNP 634005 634005 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold469 SAMTools SNP 643140 643140 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold469 SAMTools SNP 644666 644666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 646222 646222 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold469 SAMTools SNP 646240 646240 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold469 SAMTools SNP 652020 652020 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 652242 652242 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold469 SAMTools SNP 652260 652260 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold469 SAMTools SNP 655979 655979 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold469 SAMTools SNP 656006 656006 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold469 SAMTools SNP 656051 656051 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold469 SAMTools SNP 656054 656054 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 656126 656126 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold469 SAMTools SNP 656732 656732 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C38:41 scaffold469 SAMTools SNP 656821 656821 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C98:69 scaffold469 SAMTools SNP 656822 656822 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00082%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C163:42 scaffold469 SAMTools SNP 657639 657639 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0049%2C0.29%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold469 SAMTools SNP 657663 657663 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.011%2C6.7e-07%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold469 SAMTools SNP 657849 657849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 657873 657873 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold469 SAMTools SNP 657903 657903 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold469 SAMTools SNP 658737 658737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold469 SAMTools SNP 658752 658752 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold469 SAMTools SNP 658882 658882 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold469 SAMTools SNP 659290 659290 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.31%2C0.00053%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold469 SAMTools SNP 659341 659341 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold469 SAMTools SNP 660116 660116 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0075%2C1e-08%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold469 SAMTools SNP 660831 660831 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold469 SAMTools SNP 661343 661343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 662104 662104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold469 SAMTools SNP 662480 662480 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold469 SAMTools SNP 662549 662549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold469 SAMTools SNP 662591 662591 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold469 SAMTools SNP 662861 662861 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold469 SAMTools SNP 662900 662900 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.022%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold469 SAMTools SNP 662925 662925 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold469 SAMTools SNP 662993 662993 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C10%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold469 SAMTools SNP 663274 663274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold469 SAMTools SNP 663313 663313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 663400 663400 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold469 SAMTools SNP 663634 663634 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold469 SAMTools SNP 663660 663660 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold469 SAMTools SNP 663670 663670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold469 SAMTools SNP 664085 664085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold469 SAMTools SNP 664107 664107 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.029%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C140:99 scaffold469 SAMTools SNP 664131 664131 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.012%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold469 SAMTools SNP 664620 664620 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 664621 664621 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 666573 666573 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 667093 667093 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold469 SAMTools SNP 669377 669377 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C15%2C0:27 scaffold469 SAMTools SNP 672786 672786 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold469 SAMTools SNP 677905 677905 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold469 SAMTools SNP 679616 679616 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C0.33%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold469 SAMTools SNP 681091 681091 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C207:99 scaffold469 SAMTools SNP 686360 686360 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold469 SAMTools SNP 692756 692756 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold469 SAMTools SNP 694166 694166 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold469 SAMTools SNP 694958 694958 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold469 SAMTools SNP 695032 695032 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold469 SAMTools SNP 698018 698018 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 698024 698024 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 698162 698162 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold469 SAMTools SNP 698387 698387 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold469 SAMTools SNP 740521 740521 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 742688 742688 75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.0053%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold469 SAMTools SNP 742720 742720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C19:22 scaffold469 SAMTools SNP 742970 742970 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 744858 744858 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.51%2C0.23%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold469 SAMTools SNP 745806 745806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold469 SAMTools SNP 746036 746036 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold469 SAMTools SNP 746435 746435 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C24%2C0:45 scaffold469 SAMTools SNP 747865 747865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 747894 747894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C38%2C22%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.45%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 748354 748354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C40%2C25%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 748429 748429 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C44%2C61%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 748447 748447 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 748932 748932 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D26%2C11%2C43%2C257%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D2.5e-12%2C1.2e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C34%2C0:65 scaffold469 SAMTools SNP 748968 748968 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C255%2C93%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1.6e-30%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold469 SAMTools SNP 749700 749700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D584%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C147%2C225%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 749738 749738 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D469%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C113%2C355%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 750469 750469 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C110%2C17%2C219%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 750506 750506 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.14%2C0.0018%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold469 SAMTools SNP 750544 750544 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 750586 750586 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C29%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold469 SAMTools SNP 751051 751051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold469 SAMTools SNP 751057 751057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 751261 751261 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C104%2C59%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-11%2C1%2C1%2C8.8e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 751303 751303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C366%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 753326 753326 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C0%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C255%2C0:99 scaffold469 SAMTools SNP 753362 753362 77.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C3%2C1%3BMQ%3D22%3BFQ%3D-37%3BPV4%3D0.25%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C10%2C0:17 scaffold469 SAMTools SNP 755449 755449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C214%3BMQ%3D35%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 755688 755688 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C60%2C0:99 scaffold469 SAMTools SNP 758185 758185 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 759919 759919 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C150:99 scaffold469 SAMTools SNP 760509 760509 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 761000 761000 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 763725 763725 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold469 SAMTools SNP 768939 768939 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold469 SAMTools SNP 768963 768963 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 768972 768972 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold469 SAMTools SNP 771413 771413 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.17%2C0.092%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold469 SAMTools SNP 771420 771420 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C11%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C195:99 scaffold469 SAMTools SNP 771421 771421 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C167:58 scaffold469 SAMTools SNP 771433 771433 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C15%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.2%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C203:99 scaffold469 SAMTools SNP 773467 773467 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C210:99 scaffold469 SAMTools SNP 776640 776640 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C29%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.55%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold469 SAMTools SNP 777079 777079 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.23%2C0.07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold469 SAMTools SNP 777416 777416 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold469 SAMTools SNP 777790 777790 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold469 SAMTools SNP 777814 777814 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.48%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold469 SAMTools SNP 778132 778132 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.0019%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 778164 778164 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 778530 778530 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C222:99 scaffold469 SAMTools SNP 778860 778860 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold469 SAMTools SNP 779246 779246 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold469 SAMTools SNP 780925 780925 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold469 SAMTools SNP 780939 780939 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C30%2C0:57 scaffold469 SAMTools SNP 780946 780946 31.1 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C209%2C191%2C189%2C0%2C171:33 scaffold469 SAMTools SNP 780973 780973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D167%3BPV4%3D2.8e-06%2C0.0027%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold469 SAMTools SNP 781248 781248 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold469 SAMTools SNP 781884 781884 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold469 SAMTools SNP 781929 781929 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold469 SAMTools SNP 782336 782336 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.38%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold469 SAMTools SNP 782624 782624 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 782797 782797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.15%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold469 SAMTools SNP 782800 782800 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.31%2C0.35%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold469 SAMTools SNP 782824 782824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.077%2C0.38%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold469 SAMTools SNP 783028 783028 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold469 SAMTools SNP 806946 806946 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 807467 807467 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C225:57 scaffold469 SAMTools SNP 824210 824210 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C252:99 scaffold469 SAMTools SNP 824252 824252 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C54%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.54%2C0.34%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C239:99 scaffold469 SAMTools SNP 824671 824671 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.2%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold469 SAMTools SNP 824693 824693 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C25%2C37%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D7.3e-06%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold469 SAMTools SNP 825630 825630 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold469 SAMTools SNP 825634 825634 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D26%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold469 SAMTools SNP 825924 825924 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.56%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold469 SAMTools SNP 826324 826324 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C0%3BMQ%3D48%3BFQ%3D162%3BPV4%3D0.21%2C0.46%2C0.066%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold469 SAMTools SNP 826354 826354 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C12%2C0%3BMQ%3D45%3BFQ%3D161%3BPV4%3D0.19%2C1%2C0.023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold469 SAMTools SNP 826545 826545 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D49%3BFQ%3D113%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C158:99 scaffold469 SAMTools SNP 826575 826575 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C22%2C6%3BMQ%3D26%3BFQ%3D11.3%3BPV4%3D9.9e-05%2C0.11%2C7.4e-12%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C150:40 scaffold469 SAMTools SNP 828768 828768 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C17%2C13%3BMQ%3D38%3BFQ%3D101%3BPV4%3D0.00036%2C1%2C8.5e-10%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C254:99 scaffold469 SAMTools SNP 828905 828905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C23%3BMQ%3D40%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold469 SAMTools SNP 829317 829317 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C23:26 scaffold469 SAMTools SNP 829359 829359 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D5.62%3BPV4%3D0.33%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C32:35 scaffold469 SAMTools SNP 829625 829625 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C2%2C31%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.49%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold469 SAMTools SNP 830232 830232 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold469 SAMTools SNP 830248 830248 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold469 SAMTools SNP 830272 830272 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold469 SAMTools SNP 830453 830453 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C230:52 scaffold469 SAMTools SNP 831145 831145 30.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold469 SAMTools SNP 831214 831214 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C25%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C195:82 scaffold469 SAMTools SNP 831744 831744 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold469 SAMTools SNP 831756 831756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold469 SAMTools SNP 831998 831998 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold469 SAMTools SNP 832016 832016 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold469 SAMTools SNP 832085 832085 50.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold469 SAMTools SNP 832556 832556 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold469 SAMTools SNP 832595 832595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 832645 832645 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold469 SAMTools SNP 832708 832708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C19%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold469 SAMTools SNP 833338 833338 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 833340 833340 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 833347 833347 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.22%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold469 SAMTools SNP 833491 833491 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.29%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold469 SAMTools SNP 833927 833927 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 834625 834625 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold469 SAMTools SNP 834683 834683 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold469 SAMTools SNP 835358 835358 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 836313 836313 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 836359 836359 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold469 SAMTools SNP 837323 837323 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 837332 837332 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 837373 837373 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 837763 837763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 839069 839069 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold469 SAMTools SNP 839111 839111 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold469 SAMTools SNP 840414 840414 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 840436 840436 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold469 SAMTools SNP 844547 844547 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold469 SAMTools SNP 844557 844557 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 848227 848227 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C20%3BMQ%3D30%3BFQ%3D97%3BPV4%3D0.22%2C0.038%2C0.48%2C4.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C124:99 scaffold469 SAMTools SNP 848263 848263 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C5%2C0%3BMQ%3D33%3BFQ%3D92.8%3BPV4%3D3e-05%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C126:99 scaffold469 SAMTools SNP 848542 848542 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C10%2C0%3BMQ%3D37%3BFQ%3D121%3BPV4%3D5e-08%2C0.12%2C1%2C2.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C148:99 scaffold469 SAMTools SNP 848557 848557 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C7%2C2%3BMQ%3D37%3BFQ%3D120%3BPV4%3D3e-05%2C0.18%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C147:99 scaffold469 SAMTools SNP 848567 848567 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C19%3BMQ%3D39%3BFQ%3D121%3BPV4%3D0.00012%2C1%2C7.9e-06%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold469 SAMTools SNP 848841 848841 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.034%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold469 SAMTools SNP 849250 849250 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.35%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold469 SAMTools SNP 849256 849256 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.2%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold469 SAMTools SNP 849314 849314 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.093%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold469 SAMTools SNP 849751 849751 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C164:99 scaffold469 SAMTools SNP 869300 869300 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold469 SAMTools SNP 874329 874329 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 874350 874350 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold469 SAMTools SNP 875747 875747 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 876012 876012 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C54%2C0:99 scaffold469 SAMTools SNP 885188 885188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold469 SAMTools SNP 885725 885725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold469 SAMTools SNP 886410 886410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 886589 886589 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.46%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C76:79 scaffold469 SAMTools SNP 886639 886639 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold469 SAMTools SNP 889766 889766 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 889770 889770 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold469 SAMTools SNP 890283 890283 63.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C6%2C0%2C97%2C3%2C94:10 scaffold469 SAMTools SNP 890335 890335 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 891949 891949 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.073%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold469 SAMTools SNP 891995 891995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold469 SAMTools SNP 892188 892188 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold469 SAMTools SNP 892257 892257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold469 SAMTools SNP 892768 892768 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold469 SAMTools SNP 892788 892788 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold469 SAMTools SNP 893206 893206 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold469 SAMTools SNP 893219 893219 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold469 SAMTools SNP 903065 903065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 903648 903648 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold469 SAMTools SNP 904379 904379 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold469 SAMTools SNP 904537 904537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold469 SAMTools SNP 904580 904580 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 904875 904875 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C12%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold469 SAMTools SNP 905563 905563 15.9 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold469 SAMTools SNP 924828 924828 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 925074 925074 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 925219 925219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold469 SAMTools SNP 926763 926763 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold469 SAMTools SNP 938817 938817 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 938912 938912 38.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold469 SAMTools SNP 939137 939137 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold469 SAMTools SNP 939638 939638 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold469 SAMTools SNP 941558 941558 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold469 SAMTools SNP 941579 941579 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 303 303 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 424 424 7.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold471 SAMTools SNP 946 946 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 5774 5774 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold471 SAMTools SNP 5799 5799 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold471 SAMTools SNP 7597 7597 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 7903 7903 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 17772 17772 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold471 SAMTools SNP 18792 18792 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold471 SAMTools SNP 18874 18874 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 19650 19650 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.098%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold471 SAMTools SNP 19829 19829 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold471 SAMTools SNP 21664 21664 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 22324 22324 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold471 SAMTools SNP 22449 22449 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold471 SAMTools SNP 33130 33130 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C117%2C0:99 scaffold471 SAMTools SNP 33649 33649 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold471 SAMTools SNP 33689 33689 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C57%2C0:98 scaffold471 SAMTools SNP 34163 34163 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C7%2C12%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.063%2C1.2e-21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold471 SAMTools SNP 34400 34400 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C69%3BMQ%3D50%3BFQ%3D-225%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C198%2C0:99 scaffold471 SAMTools SNP 34778 34778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold471 SAMTools SNP 34784 34784 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C75%2C0%2C16%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold471 SAMTools SNP 34943 34943 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C7%2C20%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.031%2C0.016%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold471 SAMTools SNP 43862 43862 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.027%2C1.3e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold471 SAMTools SNP 43895 43895 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C19%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.55%2C6.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold471 SAMTools SNP 44253 44253 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold471 SAMTools SNP 44435 44435 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C19%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.078%2C2.6e-24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold471 SAMTools SNP 44504 44504 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold471 SAMTools SNP 44755 44755 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C2%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.012%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 44989 44989 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C10%2C0%3BMQ%3D44%3BFQ%3D100%3BPV4%3D0.18%2C0.42%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold471 SAMTools SNP 47985 47985 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.015%2C1.4e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold471 SAMTools SNP 49165 49165 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C174:99 scaffold471 SAMTools SNP 49245 49245 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold471 SAMTools SNP 49559 49559 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C185:99 scaffold471 SAMTools SNP 49661 49661 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.33%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold471 SAMTools SNP 49688 49688 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold471 SAMTools SNP 50200 50200 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1.9e-06%2C0.46%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold471 SAMTools SNP 50209 50209 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C15%3BMQ%3D50%3BFQ%3D202%3BPV4%3D9.8e-06%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold471 SAMTools SNP 50293 50293 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C9%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D7.1e-05%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold471 SAMTools SNP 50338 50338 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D3.3e-05%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold471 SAMTools SNP 50797 50797 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold471 SAMTools SNP 51890 51890 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold471 SAMTools SNP 52120 52120 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold471 SAMTools SNP 52123 52123 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.48%2C0.0056%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold471 SAMTools SNP 52155 52155 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C8%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.003%2C0.24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold471 SAMTools SNP 52375 52375 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0373%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold471 SAMTools SNP 52836 52836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.28%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 53095 53095 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.17%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold471 SAMTools SNP 53290 53290 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.096%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold471 SAMTools SNP 53308 53308 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold471 SAMTools SNP 54208 54208 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold471 SAMTools SNP 56278 56278 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 56281 56281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 56305 56305 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold471 SAMTools SNP 56311 56311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold471 SAMTools SNP 58050 58050 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold471 SAMTools SNP 61833 61833 14.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold471 SAMTools SNP 68698 68698 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 71865 71865 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold471 SAMTools SNP 77314 77314 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold471 SAMTools SNP 77916 77916 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 84745 84745 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold471 SAMTools SNP 84811 84811 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C250:82 scaffold471 SAMTools SNP 84964 84964 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold471 SAMTools SNP 88427 88427 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold471 SAMTools SNP 88612 88612 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold471 SAMTools SNP 92306 92306 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 94584 94584 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 95681 95681 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold471 SAMTools SNP 96018 96018 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold471 SAMTools SNP 96137 96137 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold471 SAMTools SNP 97358 97358 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold471 SAMTools SNP 98464 98464 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 100626 100626 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 100640 100640 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 101292 101292 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold471 SAMTools SNP 103058 103058 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 104511 104511 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold471 SAMTools SNP 107958 107958 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 108779 108779 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold471 SAMTools SNP 108821 108821 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 108890 108890 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold471 SAMTools SNP 108920 108920 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C26%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold471 SAMTools SNP 109611 109611 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold471 SAMTools SNP 111077 111077 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C30%2C0:57 scaffold471 SAMTools SNP 114086 114086 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold471 SAMTools SNP 114120 114120 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.12%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold471 SAMTools SNP 115300 115300 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C240:99 scaffold471 SAMTools SNP 115318 115318 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.49%2C0.49%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold471 SAMTools SNP 115321 115321 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C32%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold471 SAMTools SNP 115327 115327 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.037%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 116971 116971 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C4%2C7%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.16%2C0.0034%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold471 SAMTools SNP 117061 117061 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C0%2C15%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.28%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold471 SAMTools SNP 117811 117811 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold471 SAMTools SNP 117826 117826 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C15%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold471 SAMTools SNP 117916 117916 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.29%2C0.11%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold471 SAMTools SNP 117967 117967 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C82%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold471 SAMTools SNP 124642 124642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 125203 125203 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C14%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D5e-10%2C5.5e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold471 SAMTools SNP 128382 128382 25.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C18%2C0:32 scaffold471 SAMTools SNP 136493 136493 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold471 SAMTools SNP 136500 136500 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C18:21 scaffold471 SAMTools SNP 136572 136572 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C179%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 136649 136649 84 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0%2C106%2C3%2C103:45 scaffold471 SAMTools SNP 136699 136699 44.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold471 SAMTools SNP 137459 137459 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold471 SAMTools SNP 138174 138174 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 138902 138902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold471 SAMTools SNP 138941 138941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold471 SAMTools SNP 138966 138966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 138995 138995 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold471 SAMTools SNP 139491 139491 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold471 SAMTools SNP 139587 139587 95.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold471 SAMTools SNP 139628 139628 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 139656 139656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold471 SAMTools SNP 140407 140407 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold471 SAMTools SNP 140921 140921 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C21%2C0:39 scaffold471 SAMTools SNP 140950 140950 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold471 SAMTools SNP 141549 141549 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold471 SAMTools SNP 141609 141609 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold471 SAMTools SNP 142226 142226 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 142232 142232 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 142334 142334 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C33%2C0:63 scaffold471 SAMTools SNP 142701 142701 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C8%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold471 SAMTools SNP 142740 142740 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C129%2C0:99 scaffold471 SAMTools SNP 143043 143043 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold471 SAMTools SNP 143796 143796 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold471 SAMTools SNP 147335 147335 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold471 SAMTools SNP 147424 147424 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold471 SAMTools SNP 149227 149227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C24%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold471 SAMTools SNP 149248 149248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold471 SAMTools SNP 149275 149275 43.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold471 SAMTools SNP 149380 149380 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold471 SAMTools SNP 152419 152419 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C15%2C0:27 scaffold471 SAMTools SNP 153806 153806 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C27%2C0:51 scaffold471 SAMTools SNP 154605 154605 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.31%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold471 SAMTools SNP 154608 154608 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold471 SAMTools SNP 158010 158010 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold471 SAMTools SNP 159056 159056 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold471 SAMTools SNP 165848 165848 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold471 SAMTools SNP 205371 205371 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold471 SAMTools SNP 205398 205398 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C5%2C0:9 scaffold471 SAMTools SNP 206847 206847 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold471 SAMTools SNP 206868 206868 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold471 SAMTools SNP 208833 208833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 214240 214240 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 222829 222829 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C232:99 scaffold471 SAMTools SNP 230894 230894 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 235785 235785 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C66%2C5%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 238488 238488 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold471 SAMTools SNP 410999 410999 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold471 SAMTools SNP 411344 411344 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C69%2C0:99 scaffold471 SAMTools SNP 418579 418579 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold471 SAMTools SNP 422290 422290 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold471 SAMTools SNP 422303 422303 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold471 SAMTools SNP 422898 422898 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold471 SAMTools SNP 423276 423276 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.37%2C9.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold471 SAMTools SNP 423454 423454 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold471 SAMTools SNP 424555 424555 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold471 SAMTools SNP 424608 424608 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 426094 426094 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold471 SAMTools SNP 429211 429211 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C66%2C0:99 scaffold471 SAMTools SNP 429979 429979 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C5%3BMQ%3D49%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C250:99 scaffold471 SAMTools SNP 450160 450160 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 450714 450714 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 457428 457428 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 467711 467711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold471 SAMTools SNP 468077 468077 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold471 SAMTools SNP 468471 468471 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.17%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C191:99 scaffold471 SAMTools SNP 469210 469210 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D39%3BFQ%3D6.99%3BPV4%3D1%2C0.00075%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C205:33 scaffold471 SAMTools SNP 469711 469711 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C126:77 scaffold471 SAMTools SNP 469757 469757 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 474710 474710 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.018%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C133:99 scaffold471 SAMTools SNP 474712 474712 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.13%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C170:56 scaffold471 SAMTools SNP 474722 474722 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C114:67 scaffold471 SAMTools SNP 475178 475178 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold471 SAMTools SNP 476439 476439 105 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C86%2C74%2C136%2C0%2C130:21 scaffold471 SAMTools SNP 476454 476454 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold471 SAMTools SNP 481059 481059 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold471 SAMTools SNP 492627 492627 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 492643 492643 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 493210 493210 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 496195 496195 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 496902 496902 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 634979 634979 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold471 SAMTools SNP 635896 635896 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold471 SAMTools SNP 694027 694027 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 700792 700792 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold471 SAMTools SNP 704072 704072 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold471 SAMTools SNP 707902 707902 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold471 SAMTools SNP 708252 708252 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 708265 708265 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 713987 713987 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold471 SAMTools SNP 714017 714017 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold471 SAMTools SNP 718647 718647 47.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold471 SAMTools SNP 825123 825123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C97%2C1%3BMQ%3D50%3BFQ%3D-168%3BPV4%3D1%2C2e-09%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold471 SAMTools SNP 825441 825441 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D43%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C33%2C0:61 scaffold471 SAMTools SNP 850290 850290 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.018%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold471 SAMTools SNP 850293 850293 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold471 SAMTools SNP 850503 850503 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 851038 851038 114 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C52%2C4%2C20%3BMQ%3D50%3BFQ%3D117%3BPV4%3D8.4e-05%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold471 SAMTools SNP 852862 852862 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C368%2C138%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 852874 852874 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D499%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C359%2C139%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.28%2C0.36%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 852922 852922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D485%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C393%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 853212 853212 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D786%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C6%2C63%2C362%3BMQ%3D49%3BFQ%3D179%3BPV4%3D3.1e-103%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold471 SAMTools SNP 853263 853263 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C17%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 853734 853734 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C114%2C90%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1.2e-16%2C2e-46%2C1%2C7.3e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold471 SAMTools SNP 854266 854266 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C70%2C18%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1.9e-11%2C2.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold471 SAMTools SNP 858116 858116 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C1%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C226%2C0:99 scaffold471 SAMTools SNP 858356 858356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C41%2C40%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 858702 858702 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold471 SAMTools SNP 859264 859264 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 859360 859360 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 859363 859363 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 859378 859378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C13%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 860140 860140 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C22%2C51%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 861538 861538 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C23%2C106%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 861568 861568 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C20%2C4%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D2.4e-05%2C1.6e-07%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold471 SAMTools SNP 861643 861643 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C110%2C3%2C31%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold471 SAMTools SNP 862019 862019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 862351 862351 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold471 SAMTools SNP 862379 862379 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 862966 862966 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C10%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 862981 862981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C14%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 863580 863580 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C31%2C13%2C3%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.05%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold471 SAMTools SNP 863612 863612 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 863913 863913 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C142%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 864009 864009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C0%2C139%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 864672 864672 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C5%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.019%2C0.099%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold471 SAMTools SNP 864896 864896 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold471 SAMTools SNP 866246 866246 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold471 SAMTools SNP 866292 866292 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66:39 scaffold471 SAMTools SNP 866762 866762 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold471 SAMTools SNP 867058 867058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.07%2C0.13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold471 SAMTools SNP 867111 867111 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold471 SAMTools SNP 867129 867129 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold471 SAMTools SNP 870238 870238 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold471 SAMTools SNP 870273 870273 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold471 SAMTools SNP 885199 885199 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.00042%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C242:99 scaffold471 SAMTools SNP 885358 885358 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.37%2C3.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold471 SAMTools SNP 885433 885433 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold471 SAMTools SNP 885650 885650 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.34%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C241:99 scaffold471 SAMTools SNP 885665 885665 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold471 SAMTools SNP 885681 885681 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C8%2C1%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold471 SAMTools SNP 885761 885761 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold471 SAMTools SNP 885784 885784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold471 SAMTools SNP 886279 886279 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C223:99 scaffold471 SAMTools SNP 902244 902244 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold471 SAMTools SNP 902757 902757 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold471 SAMTools SNP 904515 904515 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold471 SAMTools SNP 904526 904526 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 918072 918072 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold471 SAMTools SNP 918111 918111 60.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold471 SAMTools SNP 923003 923003 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 923430 923430 63.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold471 SAMTools SNP 923466 923466 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C57%2C0:99 scaffold471 SAMTools SNP 925227 925227 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold471 SAMTools SNP 928953 928953 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C1%2C58%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.46%2C6.1e-79%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold471 SAMTools SNP 929550 929550 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold471 SAMTools SNP 929565 929565 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C3%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C4.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold471 SAMTools SNP 929634 929634 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold471 SAMTools SNP 930939 930939 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold471 SAMTools SNP 930942 930942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold471 SAMTools SNP 930945 930945 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold471 SAMTools SNP 932094 932094 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 932287 932287 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 934606 934606 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 934609 934609 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 934686 934686 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C60%2C0:99 scaffold471 SAMTools SNP 934707 934707 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold471 SAMTools SNP 934714 934714 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold471 SAMTools SNP 934727 934727 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.022%2C0.042%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold471 SAMTools SNP 935132 935132 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold471 SAMTools SNP 935396 935396 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 935417 935417 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 935453 935453 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold471 SAMTools SNP 935813 935813 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.24%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C173:99 scaffold471 SAMTools SNP 935830 935830 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.24%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C218:99 scaffold471 SAMTools SNP 935861 935861 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold471 SAMTools SNP 935918 935918 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold471 SAMTools SNP 936349 936349 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold471 SAMTools SNP 936377 936377 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold471 SAMTools SNP 936388 936388 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold471 SAMTools SNP 936956 936956 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 936997 936997 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 937420 937420 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold471 SAMTools SNP 937748 937748 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 938675 938675 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 938726 938726 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold471 SAMTools SNP 938862 938862 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 938868 938868 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 938882 938882 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 939382 939382 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 939989 939989 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 940215 940215 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 940721 940721 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold471 SAMTools SNP 941092 941092 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D4%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C7:10 scaffold471 SAMTools SNP 941209 941209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold471 SAMTools SNP 942056 942056 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C44%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 942639 942639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C5%2C5%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 942665 942665 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold471 SAMTools SNP 942717 942717 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C21%3BMQ%3D48%3BFQ%3D211%3BPV4%3D0.4%2C1%2C0.074%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold471 SAMTools SNP 943579 943579 27.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold471 SAMTools SNP 944313 944313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C80%2C0:99 scaffold471 SAMTools SNP 949500 949500 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C2.2e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold471 SAMTools SNP 949512 949512 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold471 SAMTools SNP 949734 949734 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold471 SAMTools SNP 951132 951132 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold471 SAMTools SNP 951166 951166 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 952317 952317 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 952362 952362 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold471 SAMTools SNP 953630 953630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.045%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold471 SAMTools SNP 954088 954088 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C231:99 scaffold471 SAMTools SNP 954751 954751 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D18.9%3BPV4%3D0.4%2C0.041%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C61:49 scaffold471 SAMTools SNP 954775 954775 28.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold471 SAMTools SNP 955242 955242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold471 SAMTools SNP 955246 955246 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.037%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold471 SAMTools SNP 955729 955729 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold471 SAMTools SNP 960344 960344 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C2%2C18%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.56%2C5.7e-46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold471 SAMTools SNP 960445 960445 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 961425 961425 28.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold471 SAMTools SNP 962135 962135 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold471 SAMTools SNP 962594 962594 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 963166 963166 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold471 SAMTools SNP 963379 963379 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C48%2C18%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 963873 963873 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold471 SAMTools SNP 968279 968279 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold471 SAMTools SNP 979865 979865 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C251:99 scaffold471 SAMTools SNP 979988 979988 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C1%2C0:4 scaffold471 SAMTools SNP 981655 981655 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold471 SAMTools SNP 998841 998841 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold471 SAMTools SNP 1001647 1001647 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold471 SAMTools SNP 1002020 1002020 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C9%2C33%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.6%2C0.41%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1009240 1009240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.46%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1009269 1009269 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.043%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold471 SAMTools SNP 1009420 1009420 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold471 SAMTools SNP 1018012 1018012 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 1025171 1025171 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1029072 1029072 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C171:99 scaffold471 SAMTools SNP 1032500 1032500 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold471 SAMTools SNP 1033051 1033051 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1037611 1037611 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold471 SAMTools SNP 1037641 1037641 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold471 SAMTools SNP 1048293 1048293 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1048325 1048325 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1055070 1055070 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold471 SAMTools SNP 1076403 1076403 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1076464 1076464 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1081281 1081281 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 1081290 1081290 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 1114692 1114692 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold471 SAMTools SNP 1145503 1145503 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold471 SAMTools SNP 1145707 1145707 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold471 SAMTools SNP 1147483 1147483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold471 SAMTools SNP 1154829 1154829 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold471 SAMTools SNP 1156029 1156029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold471 SAMTools SNP 1156828 1156828 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 1156830 1156830 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 1158378 1158378 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 1166595 1166595 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold471 SAMTools SNP 1168281 1168281 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C227:48 scaffold471 SAMTools SNP 1168916 1168916 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold471 SAMTools SNP 1169342 1169342 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.037%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold471 SAMTools SNP 1169364 1169364 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold471 SAMTools SNP 1173208 1173208 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D-3.09%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C27:30 scaffold471 SAMTools SNP 1173735 1173735 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.47%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold471 SAMTools SNP 1175796 1175796 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold471 SAMTools SNP 1175883 1175883 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold471 SAMTools SNP 1176033 1176033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold471 SAMTools SNP 1176526 1176526 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold471 SAMTools SNP 1177561 1177561 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold471 SAMTools SNP 1177920 1177920 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold471 SAMTools SNP 1177962 1177962 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C252:99 scaffold471 SAMTools SNP 1178010 1178010 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold471 SAMTools SNP 1178075 1178075 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.36%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1179240 1179240 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold471 SAMTools SNP 1179288 1179288 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 1179515 1179515 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold471 SAMTools SNP 1180139 1180139 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold471 SAMTools SNP 1180566 1180566 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.5%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold471 SAMTools SNP 1180774 1180774 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C254:99 scaffold471 SAMTools SNP 1180783 1180783 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold471 SAMTools SNP 1180963 1180963 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold471 SAMTools SNP 1181489 1181489 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold471 SAMTools SNP 1181513 1181513 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold471 SAMTools SNP 1181519 1181519 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold471 SAMTools SNP 1183209 1183209 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold471 SAMTools SNP 1183683 1183683 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C49%2C17%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D5.3e-15%2C7.4e-33%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold471 SAMTools SNP 1186286 1186286 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C85%2C2%2C11%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C192:99 scaffold471 SAMTools SNP 1186294 1186294 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C82%2C2%2C15%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.028%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C214:99 scaffold471 SAMTools SNP 1186837 1186837 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.48%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C253:99 scaffold471 SAMTools SNP 1186843 1186843 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold471 SAMTools SNP 1188262 1188262 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold471 SAMTools SNP 1189027 1189027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1189036 1189036 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold471 SAMTools SNP 1189072 1189072 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C134:54 scaffold471 SAMTools SNP 1189993 1189993 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.053%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold471 SAMTools SNP 1189996 1189996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C8%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.28%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold471 SAMTools SNP 1190613 1190613 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1191104 1191104 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C4%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold471 SAMTools SNP 1191366 1191366 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C8%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1191372 1191372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold471 SAMTools SNP 1225945 1225945 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold471 SAMTools SNP 1229101 1229101 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D0.2%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold471 SAMTools SNP 1229258 1229258 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.18%3BPV4%3D0.33%2C3.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C32:35 scaffold471 SAMTools SNP 1233252 1233252 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1237601 1237601 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold471 SAMTools SNP 1246728 1246728 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1246755 1246755 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold471 SAMTools SNP 1247639 1247639 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold471 SAMTools SNP 1247931 1247931 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold471 SAMTools SNP 1247958 1247958 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold471 SAMTools SNP 1248033 1248033 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold471 SAMTools SNP 1248503 1248503 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1249636 1249636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1250039 1250039 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1250042 1250042 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.49%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1250067 1250067 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1250403 1250403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C8%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold471 SAMTools SNP 1250406 1250406 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D60%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.37%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold471 SAMTools SNP 1250522 1250522 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C72%2C4%2C23%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.062%2C0.0019%2C1%2C2.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold471 SAMTools SNP 1251212 1251212 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C40%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.28%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1251273 1251273 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1252612 1252612 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold471 SAMTools SNP 1252933 1252933 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold471 SAMTools SNP 1254754 1254754 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C30%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1254785 1254785 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1255135 1255135 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold471 SAMTools SNP 1256022 1256022 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C5%3BMQ%3D45%3BFQ%3D140%3BPV4%3D0.57%2C0.5%2C0.32%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C167:99 scaffold471 SAMTools SNP 1256106 1256106 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold471 SAMTools SNP 1257027 1257027 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C5%2C0:8 scaffold471 SAMTools SNP 1257528 1257528 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold471 SAMTools SNP 1258777 1258777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold471 SAMTools SNP 1258819 1258819 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C2%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.0095%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold471 SAMTools SNP 1259085 1259085 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1259930 1259930 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold471 SAMTools SNP 1259935 1259935 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold471 SAMTools SNP 1262188 1262188 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold471 SAMTools SNP 1262200 1262200 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C206:63 scaffold471 SAMTools SNP 1262211 1262211 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold471 SAMTools SNP 1262853 1262853 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 380 380 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 410 410 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C237:99 scaffold472 SAMTools SNP 439 439 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.46%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C181:99 scaffold472 SAMTools SNP 458 458 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold472 SAMTools SNP 475 475 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold472 SAMTools SNP 501 501 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold472 SAMTools SNP 7829 7829 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 8079 8079 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C117%2C0:99 scaffold472 SAMTools SNP 8326 8326 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 12906 12906 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.19%2C0.0016%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C225:46 scaffold472 SAMTools SNP 12958 12958 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.035%2C0.081%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold472 SAMTools SNP 14795 14795 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold472 SAMTools SNP 14852 14852 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C87%2C5%2C38%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C2.2e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold472 SAMTools SNP 18046 18046 10.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold472 SAMTools SNP 29134 29134 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 31551 31551 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold472 SAMTools SNP 32027 32027 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 40773 40773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 41173 41173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C25%2C33%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.23%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 41233 41233 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.12%2C0.00023%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold472 SAMTools SNP 41519 41519 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold472 SAMTools SNP 41528 41528 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 43016 43016 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C76:43 scaffold472 SAMTools SNP 43663 43663 29.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold472 SAMTools SNP 64070 64070 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C0.0026%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C174:54 scaffold472 SAMTools SNP 64143 64143 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold472 SAMTools SNP 65057 65057 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C1%2C39%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C7.9e-63%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C246:99 scaffold472 SAMTools SNP 65296 65296 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C30%2C0:57 scaffold472 SAMTools SNP 65384 65384 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C27%2C0:51 scaffold472 SAMTools SNP 65526 65526 75.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold472 SAMTools SNP 65690 65690 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold472 SAMTools SNP 67637 67637 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold472 SAMTools SNP 75092 75092 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C30%2C0:40 scaffold472 SAMTools SNP 84689 84689 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C36%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C111%2C0:99 scaffold472 SAMTools SNP 85123 85123 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold472 SAMTools SNP 85719 85719 12.7 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold472 SAMTools SNP 85731 85731 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold472 SAMTools SNP 85762 85762 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold472 SAMTools SNP 85848 85848 27.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold472 SAMTools SNP 87340 87340 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold472 SAMTools SNP 87371 87371 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold472 SAMTools SNP 88172 88172 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C228:99 scaffold472 SAMTools SNP 88181 88181 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.53%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold472 SAMTools SNP 88187 88187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold472 SAMTools SNP 88888 88888 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold472 SAMTools SNP 89371 89371 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold472 SAMTools SNP 89386 89386 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold472 SAMTools SNP 89821 89821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 89872 89872 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 89917 89917 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C27%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 90066 90066 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C31%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold472 SAMTools SNP 90108 90108 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0084%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold472 SAMTools SNP 90432 90432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold472 SAMTools SNP 91037 91037 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 91049 91049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold472 SAMTools SNP 91106 91106 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold472 SAMTools SNP 91142 91142 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold472 SAMTools SNP 91895 91895 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.043%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold472 SAMTools SNP 91916 91916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.19%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold472 SAMTools SNP 92164 92164 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 92194 92194 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.39%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold472 SAMTools SNP 95997 95997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold472 SAMTools SNP 96036 96036 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold472 SAMTools SNP 96343 96343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 107603 107603 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold472 SAMTools SNP 107765 107765 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.11%2C0.022%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C223:99 scaffold472 SAMTools SNP 107792 107792 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 108076 108076 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold472 SAMTools SNP 108088 108088 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 108100 108100 198 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.025%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C194:99 scaffold472 SAMTools SNP 108118 108118 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C251:99 scaffold472 SAMTools SNP 108137 108137 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.31%2C0.21%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C251:99 scaffold472 SAMTools SNP 108732 108732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold472 SAMTools SNP 108765 108765 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 108882 108882 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold472 SAMTools SNP 109551 109551 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C216%2C192:44 scaffold472 SAMTools SNP 109650 109650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C119%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 109674 109674 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C9%2C59%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 110257 110257 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold472 SAMTools SNP 111249 111249 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold472 SAMTools SNP 113393 113393 76.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold472 SAMTools SNP 116558 116558 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold472 SAMTools SNP 119063 119063 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 124585 124585 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 124942 124942 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 126929 126929 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 126953 126953 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 133295 133295 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold472 SAMTools SNP 133472 133472 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold472 SAMTools SNP 133916 133916 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold472 SAMTools SNP 133919 133919 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold472 SAMTools SNP 133947 133947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold472 SAMTools SNP 134318 134318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold472 SAMTools SNP 134429 134429 10.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold472 SAMTools SNP 134439 134439 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.068%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold472 SAMTools SNP 134456 134456 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 134661 134661 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold472 SAMTools SNP 135349 135349 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 135445 135445 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 135835 135835 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold472 SAMTools SNP 135853 135853 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold472 SAMTools SNP 135913 135913 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 135919 135919 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 136249 136249 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 138576 138576 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold472 SAMTools SNP 138622 138622 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold472 SAMTools SNP 138640 138640 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold472 SAMTools SNP 138955 138955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold472 SAMTools SNP 139219 139219 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 140311 140311 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 140314 140314 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 141129 141129 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 141186 141186 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 141525 141525 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 141583 141583 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 141912 141912 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 141996 141996 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold472 SAMTools SNP 143132 143132 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 143135 143135 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 144648 144648 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 144654 144654 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 145295 145295 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 145897 145897 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 145909 145909 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 146559 146559 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold472 SAMTools SNP 146595 146595 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold472 SAMTools SNP 146598 146598 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold472 SAMTools SNP 146977 146977 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 149220 149220 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 149229 149229 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 149244 149244 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 149515 149515 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C228:50 scaffold472 SAMTools SNP 150087 150087 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.0089%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold472 SAMTools SNP 151302 151302 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold472 SAMTools SNP 151303 151303 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold472 SAMTools SNP 151326 151326 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold472 SAMTools SNP 151624 151624 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C27%2C0:51 scaffold472 SAMTools SNP 193232 193232 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.058%2C0.2%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold472 SAMTools SNP 194197 194197 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold472 SAMTools SNP 194877 194877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold472 SAMTools SNP 195258 195258 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.23%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold472 SAMTools SNP 195351 195351 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.39%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold472 SAMTools SNP 195366 195366 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold472 SAMTools SNP 196157 196157 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold472 SAMTools SNP 196721 196721 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold472 SAMTools SNP 196756 196756 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold472 SAMTools SNP 196792 196792 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold472 SAMTools SNP 197574 197574 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 200278 200278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold472 SAMTools SNP 200293 200293 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold472 SAMTools SNP 200311 200311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold472 SAMTools SNP 200720 200720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D184%3BPV4%3D5.4e-05%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold472 SAMTools SNP 200794 200794 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C17%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.012%2C0.19%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold472 SAMTools SNP 201539 201539 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.55%2C0.091%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold472 SAMTools SNP 202091 202091 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 208378 208378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold472 SAMTools SNP 208421 208421 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D289%2C0%2C306%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 211937 211937 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D874%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C396%2C76%2C197%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00051%2C5e-101%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 211966 211966 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D947%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold472 SAMTools SNP 218329 218329 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C34%2C31%2C4%3BMQ%3D49%3BFQ%3D205%3BPV4%3D0.017%2C1%2C0.37%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold472 SAMTools SNP 218332 218332 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C22%2C19%2C2%3BMQ%3D49%3BFQ%3D148%3BPV4%3D0.24%2C0.28%2C0.26%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold472 SAMTools SNP 218374 218374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 221428 221428 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 221437 221437 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C13%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold472 SAMTools SNP 221486 221486 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C35%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C175%2C0:99 scaffold472 SAMTools SNP 221552 221552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 221555 221555 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 222100 222100 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold472 SAMTools SNP 222101 222101 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C1%2C4%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold472 SAMTools SNP 222115 222115 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C7.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222163 222163 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D58%3BPV4%3D4.8e-10%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold472 SAMTools SNP 222232 222232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C35%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.16%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222402 222402 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D671%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D354%2C60%2C223%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222772 222772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D601%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D229%2C13%2C333%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222784 222784 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C46%2C84%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222827 222827 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D725%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 222989 222989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C55%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 222995 222995 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C62%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 223448 223448 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C52%2C0%2C53%3BMQ%3D50%3BFQ%3D222%3BPV4%3D3.3e-06%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold472 SAMTools SNP 223454 223454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C51%2C0%2C53%3BMQ%3D50%3BFQ%3D223%3BPV4%3D3.1e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold472 SAMTools SNP 223544 223544 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C21%2C46%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold472 SAMTools SNP 223880 223880 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C22%2C41%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 232711 232711 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold472 SAMTools SNP 232722 232722 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold472 SAMTools SNP 240760 240760 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold472 SAMTools SNP 241836 241836 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold472 SAMTools SNP 242045 242045 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 243705 243705 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold472 SAMTools SNP 260301 260301 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C25%2C28%2C9%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.19%2C2.2e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold472 SAMTools SNP 260730 260730 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C36%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.37%2C2.3e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold472 SAMTools SNP 261228 261228 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C17%2C15%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.32%2C8.4e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold472 SAMTools SNP 261825 261825 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C31%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.056%2C1.5e-59%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold472 SAMTools SNP 262670 262670 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold472 SAMTools SNP 321058 321058 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C34%3BMQ%3D49%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold472 SAMTools SNP 321094 321094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C31%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold472 SAMTools SNP 321914 321914 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C13%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.6%2C0.48%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold472 SAMTools SNP 326655 326655 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 327928 327928 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 335417 335417 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold472 SAMTools SNP 335741 335741 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold472 SAMTools SNP 335805 335805 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold472 SAMTools SNP 338246 338246 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold472 SAMTools SNP 338833 338833 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold472 SAMTools SNP 339374 339374 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 344467 344467 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 344482 344482 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 344506 344506 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold472 SAMTools SNP 344922 344922 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold472 SAMTools SNP 344937 344937 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold472 SAMTools SNP 346395 346395 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold472 SAMTools SNP 348287 348287 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold472 SAMTools SNP 350027 350027 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C6%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.32%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold472 SAMTools SNP 350365 350365 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C36%2C6%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.26%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold472 SAMTools SNP 350975 350975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 351014 351014 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C3%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold472 SAMTools SNP 351447 351447 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C6%2C15%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold472 SAMTools SNP 351465 351465 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C13%2C11%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold472 SAMTools SNP 351504 351504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 353176 353176 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C6%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.53%2C0.38%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold472 SAMTools SNP 353563 353563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C32%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 353567 353567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 353584 353584 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 353632 353632 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C153%2C38%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold472 SAMTools SNP 354395 354395 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C6%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.12%2C0.041%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold472 SAMTools SNP 354835 354835 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold472 SAMTools SNP 354911 354911 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 356039 356039 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C23%2C50%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 356816 356816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D195%2C47%2C71%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-05%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 356897 356897 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C85%2C43%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-09%2C1%2C1%2C1.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 356912 356912 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C197%2C49%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1.4e-09%2C1%2C1%2C3.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold472 SAMTools SNP 357465 357465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D671%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D231%2C68%2C258%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.062%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 357772 357772 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C24%2C116%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold472 SAMTools SNP 358094 358094 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C35%3BMQ%3D50%3BFQ%3D-125%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C98%2C0:99 scaffold472 SAMTools SNP 358142 358142 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold472 SAMTools SNP 358643 358643 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold472 SAMTools SNP 390230 390230 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C147:99 scaffold472 SAMTools SNP 391327 391327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold472 SAMTools SNP 391401 391401 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold472 SAMTools SNP 396033 396033 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 396352 396352 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold472 SAMTools SNP 396391 396391 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold472 SAMTools SNP 396902 396902 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 396938 396938 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold472 SAMTools SNP 397585 397585 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold472 SAMTools SNP 397785 397785 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C212:99 scaffold472 SAMTools SNP 397889 397889 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.043%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C157:70 scaffold472 SAMTools SNP 397922 397922 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C30:33 scaffold472 SAMTools SNP 398243 398243 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold472 SAMTools SNP 398310 398310 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold472 SAMTools SNP 399353 399353 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D44.9%3BPV4%3D0.4%2C0.06%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C74:75 scaffold472 SAMTools SNP 399360 399360 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold472 SAMTools SNP 399366 399366 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0170%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold472 SAMTools SNP 399405 399405 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0369%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold472 SAMTools SNP 405680 405680 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold472 SAMTools SNP 410912 410912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold472 SAMTools SNP 410926 410926 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold472 SAMTools SNP 413511 413511 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold472 SAMTools SNP 416742 416742 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C39%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold472 SAMTools SNP 416765 416765 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold472 SAMTools SNP 416781 416781 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold472 SAMTools SNP 417006 417006 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C60%2C0:99 scaffold472 SAMTools SNP 417506 417506 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold472 SAMTools SNP 417891 417891 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold472 SAMTools SNP 418323 418323 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold472 SAMTools SNP 418326 418326 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold472 SAMTools SNP 418966 418966 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 418976 418976 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C15%2C0:27 scaffold472 SAMTools SNP 420083 420083 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C20%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold472 SAMTools SNP 420380 420380 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold472 SAMTools SNP 420384 420384 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold472 SAMTools SNP 420594 420594 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold472 SAMTools SNP 422708 422708 101 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C45%2C0%2C133%2C32%2C130:87 scaffold472 SAMTools SNP 424591 424591 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C33%2C0:60 scaffold472 SAMTools SNP 424757 424757 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C27%2C0:51 scaffold472 SAMTools SNP 425568 425568 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold472 SAMTools SNP 426750 426750 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C18%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold472 SAMTools SNP 427319 427319 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C50%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold472 SAMTools SNP 427476 427476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 427916 427916 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold472 SAMTools SNP 427922 427922 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold472 SAMTools SNP 427943 427943 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 428375 428375 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold472 SAMTools SNP 428923 428923 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold472 SAMTools SNP 428938 428938 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold472 SAMTools SNP 430429 430429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold472 SAMTools SNP 430721 430721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold472 SAMTools SNP 432507 432507 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C21%2C13%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.036%2C1%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold472 SAMTools SNP 433341 433341 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C44%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold472 SAMTools SNP 435400 435400 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold472 SAMTools SNP 435804 435804 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold472 SAMTools SNP 435834 435834 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C196:30 scaffold472 SAMTools SNP 439686 439686 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold472 SAMTools SNP 439698 439698 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold472 SAMTools SNP 439746 439746 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 443420 443420 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold472 SAMTools SNP 443444 443444 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.13%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C95:51 scaffold472 SAMTools SNP 448686 448686 23.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold472 SAMTools SNP 458012 458012 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold472 SAMTools SNP 508946 508946 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold472 SAMTools SNP 509049 509049 27.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold472 SAMTools SNP 509185 509185 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold472 SAMTools SNP 509329 509329 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold473 SAMTools SNP 5020 5020 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 5053 5053 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold473 SAMTools SNP 5371 5371 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold473 SAMTools SNP 10453 10453 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold473 SAMTools SNP 10474 10474 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold473 SAMTools SNP 12761 12761 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C170:79 scaffold473 SAMTools SNP 14588 14588 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold473 SAMTools SNP 14651 14651 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold473 SAMTools SNP 14851 14851 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00088%2C0.035%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold473 SAMTools SNP 15229 15229 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C13%2C6%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.024%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold473 SAMTools SNP 15639 15639 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold473 SAMTools SNP 15687 15687 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold473 SAMTools SNP 16527 16527 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.32%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold473 SAMTools SNP 69057 69057 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold473 SAMTools SNP 69260 69260 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold473 SAMTools SNP 69287 69287 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold473 SAMTools SNP 69323 69323 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold473 SAMTools SNP 70567 70567 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 70572 70572 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 71316 71316 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C1%3BMQ%3D48%3BFQ%3D135%3BPV4%3D0.036%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold473 SAMTools SNP 71370 71370 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C3%3BMQ%3D49%3BFQ%3D41%3BPV4%3D0.53%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold473 SAMTools SNP 71376 71376 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D49%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold473 SAMTools SNP 71708 71708 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D46%3BFQ%3D77.9%3BPV4%3D1%2C0.07%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C107:99 scaffold473 SAMTools SNP 71728 71728 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D50%3BPV4%3D1%2C1%2C0.19%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold473 SAMTools SNP 71759 71759 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold473 SAMTools SNP 71780 71780 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold473 SAMTools SNP 80358 80358 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C35%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold473 SAMTools SNP 80766 80766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold473 SAMTools SNP 80876 80876 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C34%2C100%2C35%3BMQ%3D48%3BFQ%3D215%3BPV4%3D0.053%2C4.3e-147%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold473 SAMTools SNP 80920 80920 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C121%2C50%2C161%3BMQ%3D47%3BFQ%3D225%3BPV4%3D5.2e-05%2C2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 82354 82354 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold473 SAMTools SNP 82443 82443 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold473 SAMTools SNP 82456 82456 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold473 SAMTools SNP 82497 82497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold473 SAMTools SNP 82992 82992 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold473 SAMTools SNP 83629 83629 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold473 SAMTools SNP 83658 83658 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold473 SAMTools SNP 83679 83679 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold473 SAMTools SNP 83736 83736 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold473 SAMTools SNP 85014 85014 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold473 SAMTools SNP 85110 85110 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 85275 85275 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold473 SAMTools SNP 85656 85656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C9%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold473 SAMTools SNP 85670 85670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C6%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold473 SAMTools SNP 86371 86371 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 86443 86443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold473 SAMTools SNP 86554 86554 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold473 SAMTools SNP 87009 87009 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D38%2C1%2C4%2C0%3BMQ%3D37%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C147:37 scaffold473 SAMTools SNP 87161 87161 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C14%3BMQ%3D41%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C204:99 scaffold473 SAMTools SNP 87201 87201 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold473 SAMTools SNP 87575 87575 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C242:99 scaffold473 SAMTools SNP 87595 87595 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.11%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold473 SAMTools SNP 102477 102477 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 102936 102936 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold473 SAMTools SNP 115184 115184 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold473 SAMTools SNP 116291 116291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold473 SAMTools SNP 117069 117069 23.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold473 SAMTools SNP 117547 117547 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C2.8e-06%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C225:39 scaffold473 SAMTools SNP 117567 117567 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold473 SAMTools SNP 117612 117612 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold473 SAMTools SNP 117621 117621 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold473 SAMTools SNP 118081 118081 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold473 SAMTools SNP 118149 118149 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C24%2C0:45 scaffold473 SAMTools SNP 118158 118158 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C65:68 scaffold473 SAMTools SNP 118188 118188 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C197:99 scaffold473 SAMTools SNP 118799 118799 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold473 SAMTools SNP 118972 118972 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold473 SAMTools SNP 120014 120014 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold473 SAMTools SNP 120064 120064 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold473 SAMTools SNP 120070 120070 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold473 SAMTools SNP 120113 120113 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C145:99 scaffold473 SAMTools SNP 120122 120122 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold473 SAMTools SNP 122945 122945 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C38%2C18%2C32%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.014%2C3e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold473 SAMTools SNP 123379 123379 45.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold473 SAMTools SNP 123611 123611 38.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold473 SAMTools SNP 126166 126166 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold473 SAMTools SNP 127407 127407 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold473 SAMTools SNP 127862 127862 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold473 SAMTools SNP 128372 128372 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C98:51 scaffold473 SAMTools SNP 128928 128928 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold473 SAMTools SNP 132794 132794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C16%3BMQ%3D42%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold473 SAMTools SNP 133327 133327 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C38%2C14%2C5%3BMQ%3D41%3BFQ%3D125%3BPV4%3D0.0037%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold473 SAMTools SNP 135237 135237 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold473 SAMTools SNP 137047 137047 5.45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D26%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C93%2C0:45 scaffold473 SAMTools SNP 137748 137748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D863%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C372%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 137799 137799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C207%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 138042 138042 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C30%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold473 SAMTools SNP 138486 138486 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3020%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C50%2C2466%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 138931 138931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 147515 147515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D384%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C98%2C137%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 148053 148053 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D929%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D308%2C70%2C490%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-07%2C2.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 148407 148407 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D880%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C304%2C131%2C348%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0014%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 148437 148437 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D815%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C313%2C28%2C341%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 148746 148746 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2284%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C856%2C1225%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 149625 149625 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2039%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D354%2C809%2C23%2C839%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 150428 150428 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1838%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-83%3BPV4%3D1%2C0.0062%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C56%2C0:99 scaffold473 SAMTools SNP 156365 156365 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold473 SAMTools SNP 156417 156417 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold473 SAMTools SNP 156437 156437 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold473 SAMTools SNP 159592 159592 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold473 SAMTools SNP 160731 160731 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold473 SAMTools SNP 160750 160750 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C65%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold473 SAMTools SNP 165012 165012 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold473 SAMTools SNP 165021 165021 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold473 SAMTools SNP 165093 165093 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold473 SAMTools SNP 165143 165143 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold473 SAMTools SNP 165490 165490 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 165495 165495 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 165535 165535 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C39%2C17%2C43%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.19%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold473 SAMTools SNP 167534 167534 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D47%3BFQ%3D47%3BPV4%3D0.57%2C0.14%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C189:77 scaffold473 SAMTools SNP 168287 168287 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold473 SAMTools SNP 169004 169004 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold473 SAMTools SNP 184579 184579 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold473 SAMTools SNP 184598 184598 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold473 SAMTools SNP 186172 186172 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C5%2C1%3BMQ%3D49%3BFQ%3D123%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold473 SAMTools SNP 186359 186359 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold473 SAMTools SNP 186384 186384 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold473 SAMTools SNP 187013 187013 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C6%2C0%3BMQ%3D49%3BFQ%3D107%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold473 SAMTools SNP 187274 187274 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold473 SAMTools SNP 224597 224597 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold473 SAMTools SNP 224656 224656 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold473 SAMTools SNP 224723 224723 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold473 SAMTools SNP 224725 224725 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold473 SAMTools SNP 224740 224740 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold473 SAMTools SNP 261579 261579 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold473 SAMTools SNP 261745 261745 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C245:99 scaffold473 SAMTools SNP 261770 261770 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C0.3%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold473 SAMTools SNP 261825 261825 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold473 SAMTools SNP 262620 262620 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold473 SAMTools SNP 262640 262640 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold473 SAMTools SNP 265647 265647 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C25%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C28%2C0:34 scaffold473 SAMTools SNP 265673 265673 42.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C4%2C0:7 scaffold474 SAMTools SNP 8335 8335 3.02 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold474 SAMTools SNP 23520 23520 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold474 SAMTools SNP 23843 23843 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold474 SAMTools SNP 23859 23859 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold474 SAMTools SNP 24420 24420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold474 SAMTools SNP 24435 24435 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold474 SAMTools SNP 24481 24481 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold474 SAMTools SNP 25969 25969 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold474 SAMTools SNP 27986 27986 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold474 SAMTools SNP 29447 29447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold474 SAMTools SNP 32523 32523 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold474 SAMTools SNP 93085 93085 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold474 SAMTools SNP 107595 107595 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold474 SAMTools SNP 107617 107617 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C170:99 scaffold474 SAMTools SNP 112039 112039 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C3%2C8%3BMQ%3D47%3BFQ%3D198%3BPV4%3D0.17%2C1%2C0.017%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold474 SAMTools SNP 112213 112213 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D47%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold474 SAMTools SNP 116444 116444 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold474 SAMTools SNP 117603 117603 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C7%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold474 SAMTools SNP 117617 117617 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold474 SAMTools SNP 118174 118174 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C32%2C0%2C12%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0022%2C3.9e-15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold474 SAMTools SNP 118870 118870 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.0069%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold474 SAMTools SNP 118879 118879 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold474 SAMTools SNP 118912 118912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold474 SAMTools SNP 118920 118920 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.57%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C232:99 scaffold474 SAMTools SNP 119297 119297 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C18%2C0:33 scaffold474 SAMTools SNP 119300 119300 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold474 SAMTools SNP 126866 126866 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold474 SAMTools SNP 126920 126920 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold474 SAMTools SNP 126923 126923 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold474 SAMTools SNP 133323 133323 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold474 SAMTools SNP 146209 146209 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C45%2C0:87 scaffold477 SAMTools SNP 17508 17508 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 17550 17550 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 17650 17650 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 19127 19127 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold477 SAMTools SNP 28916 28916 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 32801 32801 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 36005 36005 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold477 SAMTools SNP 36012 36012 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold477 SAMTools SNP 36447 36447 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 40422 40422 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 43489 43489 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold477 SAMTools SNP 43499 43499 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold477 SAMTools SNP 81768 81768 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 88591 88591 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold477 SAMTools SNP 88609 88609 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold477 SAMTools SNP 89434 89434 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C10%2C0%3BMQ%3D49%3BFQ%3D132%3BPV4%3D0.083%2C1%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold477 SAMTools SNP 90722 90722 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C186:72 scaffold477 SAMTools SNP 90755 90755 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold477 SAMTools SNP 90781 90781 77.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C15%2C0:27 scaffold477 SAMTools SNP 91831 91831 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold477 SAMTools SNP 92514 92514 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold477 SAMTools SNP 92556 92556 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C21%2C0%3BMQ%3D46%3BFQ%3D214%3BPV4%3D0.023%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold477 SAMTools SNP 94419 94419 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 94420 94420 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 95663 95663 32.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold477 SAMTools SNP 95677 95677 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold477 SAMTools SNP 95701 95701 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold477 SAMTools SNP 95965 95965 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold477 SAMTools SNP 97418 97418 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold477 SAMTools SNP 98023 98023 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0354%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D27%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.4%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C76:36 scaffold477 SAMTools SNP 116629 116629 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold477 SAMTools SNP 118743 118743 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold477 SAMTools SNP 118802 118802 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 118983 118983 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 164170 164170 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold477 SAMTools SNP 164215 164215 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold477 SAMTools SNP 164219 164219 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold477 SAMTools SNP 164537 164537 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold477 SAMTools SNP 164549 164549 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold477 SAMTools SNP 165433 165433 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 165462 165462 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 167389 167389 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 167434 167434 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 169203 169203 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 169780 169780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold477 SAMTools SNP 169789 169789 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold477 SAMTools SNP 169804 169804 31.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold477 SAMTools SNP 169921 169921 16.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C27%2C47%2C0%2C41:6 scaffold477 SAMTools SNP 172047 172047 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 173916 173916 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold477 SAMTools SNP 174299 174299 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.15%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C216:99 scaffold477 SAMTools SNP 174352 174352 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C11%2C0%3BMQ%3D49%3BFQ%3D123%3BPV4%3D0.029%2C0.00035%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C165:99 scaffold477 SAMTools SNP 174354 174354 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D47%3BFQ%3D7.8%3BPV4%3D0.5%2C0.029%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C215:34 scaffold477 SAMTools SNP 174693 174693 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C7%2C1%3BMQ%3D48%3BFQ%3D144%3BPV4%3D0.017%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold477 SAMTools SNP 174709 174709 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C4%3BMQ%3D48%3BFQ%3D214%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold477 SAMTools SNP 174766 174766 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C9%3BMQ%3D45%3BFQ%3D176%3BPV4%3D0.03%2C0.083%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C234:99 scaffold477 SAMTools SNP 174929 174929 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C2%2C7%3BMQ%3D42%3BFQ%3D108%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold477 SAMTools SNP 174942 174942 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C8%2C0%3BMQ%3D42%3BFQ%3D118%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold477 SAMTools SNP 175583 175583 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C5%3BMQ%3D43%3BFQ%3D140%3BPV4%3D0.082%2C1%2C0.064%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C193:99 scaffold477 SAMTools SNP 194447 194447 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold477 SAMTools SNP 194761 194761 57.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold477 SAMTools SNP 196454 196454 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold477 SAMTools SNP 197684 197684 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold477 SAMTools SNP 197710 197710 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold477 SAMTools SNP 197730 197730 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold477 SAMTools SNP 198757 198757 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold477 SAMTools SNP 198774 198774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold477 SAMTools SNP 199253 199253 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold477 SAMTools SNP 201860 201860 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 202398 202398 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 206257 206257 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 227739 227739 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.41%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold477 SAMTools SNP 228631 228631 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C13%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C190%2C0:99 scaffold477 SAMTools SNP 229007 229007 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C108%2C0:99 scaffold477 SAMTools SNP 229085 229085 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C36%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold477 SAMTools SNP 229497 229497 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.67%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold477 SAMTools SNP 229512 229512 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold477 SAMTools SNP 231705 231705 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.069%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C194:39 scaffold477 SAMTools SNP 232215 232215 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold477 SAMTools SNP 272261 272261 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold477 SAMTools SNP 277214 277214 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 289206 289206 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold477 SAMTools SNP 289509 289509 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold477 SAMTools SNP 290844 290844 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 318589 318589 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold477 SAMTools SNP 318591 318591 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold477 SAMTools SNP 318784 318784 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold477 SAMTools SNP 318787 318787 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold477 SAMTools SNP 319114 319114 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold477 SAMTools SNP 319141 319141 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold479 SAMTools SNP 7822 7822 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 7823 7823 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 7883 7883 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold479 SAMTools SNP 10244 10244 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 14826 14826 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C27%2C14%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.12%2C8.4e-65%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold479 SAMTools SNP 14878 14878 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C41%2C3%2C37%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.051%2C9e-110%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold479 SAMTools SNP 15306 15306 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold479 SAMTools SNP 15334 15334 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.45%2C1.8e-28%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C242:72 scaffold479 SAMTools SNP 15492 15492 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold479 SAMTools SNP 15543 15543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C4%2C32%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold479 SAMTools SNP 16053 16053 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold479 SAMTools SNP 16080 16080 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold479 SAMTools SNP 17522 17522 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold479 SAMTools SNP 20545 20545 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C55%2C29%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 20572 20572 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C66%2C27%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 23544 23544 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold479 SAMTools SNP 27813 27813 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold479 SAMTools SNP 37489 37489 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold479 SAMTools SNP 38413 38413 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold479 SAMTools SNP 38431 38431 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold479 SAMTools SNP 38559 38559 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 39194 39194 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 41299 41299 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold479 SAMTools SNP 44844 44844 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 44847 44847 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 45625 45625 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold479 SAMTools SNP 45720 45720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C5%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.11%2C0.0046%2C0.082%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 46816 46816 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold479 SAMTools SNP 46921 46921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold479 SAMTools SNP 53886 53886 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C96:77 scaffold479 SAMTools SNP 54126 54126 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold479 SAMTools SNP 73826 73826 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 73863 73863 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 85145 85145 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold479 SAMTools SNP 85168 85168 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold479 SAMTools SNP 90902 90902 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C29%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0061%2C8.1e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold479 SAMTools SNP 91282 91282 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C5e-21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold479 SAMTools SNP 109062 109062 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D62.9%3BPV4%3D1%2C0.00011%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C107:93 scaffold479 SAMTools SNP 109206 109206 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 109245 109245 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 111575 111575 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold479 SAMTools SNP 111641 111641 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 112662 112662 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold479 SAMTools SNP 112701 112701 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold479 SAMTools SNP 113315 113315 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 113323 113323 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold479 SAMTools SNP 114048 114048 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold479 SAMTools SNP 123036 123036 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold479 SAMTools SNP 123783 123783 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold479 SAMTools SNP 124190 124190 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold479 SAMTools SNP 124762 124762 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.4%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 124796 124796 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C42%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 125632 125632 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C4%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 126521 126521 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold479 SAMTools SNP 126578 126578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C22%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 126617 126617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C38%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 127191 127191 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C11%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D2.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold479 SAMTools SNP 127452 127452 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold479 SAMTools SNP 127497 127497 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold479 SAMTools SNP 128231 128231 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold479 SAMTools SNP 128401 128401 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 137819 137819 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold479 SAMTools SNP 137834 137834 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold479 SAMTools SNP 137852 137852 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold479 SAMTools SNP 138269 138269 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold479 SAMTools SNP 138339 138339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C2%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 138663 138663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C1%2C73%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.21%2C0.17%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 140987 140987 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C32%2C0%2C18%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00075%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold479 SAMTools SNP 142438 142438 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 142990 142990 9.97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold479 SAMTools SNP 145676 145676 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.4e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C153:39 scaffold479 SAMTools SNP 146866 146866 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C1%2C127%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.1e-201%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold479 SAMTools SNP 148544 148544 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C234:49 scaffold479 SAMTools SNP 148640 148640 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.36%2C8.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C233:81 scaffold479 SAMTools SNP 151269 151269 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 152181 152181 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D637%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C234%2C179%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D7.5e-43%2C3.5e-70%2C1%2C5.9e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold479 SAMTools SNP 152464 152464 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold479 SAMTools SNP 153378 153378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C476%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 156778 156778 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold479 SAMTools SNP 158836 158836 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold479 SAMTools SNP 158878 158878 40.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold479 SAMTools SNP 159322 159322 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold479 SAMTools SNP 159426 159426 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C77:80 scaffold479 SAMTools SNP 173850 173850 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold479 SAMTools SNP 174192 174192 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold479 SAMTools SNP 174888 174888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 206336 206336 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C20%2C4%2C15%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0027%2C1.2e-10%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold479 SAMTools SNP 206788 206788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C245%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 207861 207861 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D35%2C29%2C32%2C0%3BMQ%3D30%3BFQ%3D8.65%3BPV4%3D6.5e-07%2C1.5e-15%2C0.0019%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C213:36 scaffold479 SAMTools SNP 222717 222717 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold479 SAMTools SNP 271120 271120 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold479 SAMTools SNP 271142 271142 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.23%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C190:99 scaffold479 SAMTools SNP 275431 275431 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold479 SAMTools SNP 281380 281380 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold479 SAMTools SNP 281416 281416 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold479 SAMTools SNP 282222 282222 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold479 SAMTools SNP 284702 284702 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold479 SAMTools SNP 292763 292763 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 292781 292781 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold479 SAMTools SNP 298586 298586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 298630 298630 224 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C235%2C24%2C106%3BMQ%3D50%3BFQ%3D224%3BPV4%3D8.4e-05%2C2.6e-84%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold479 SAMTools SNP 298792 298792 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C20%2C35%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 298813 298813 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C213%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 298822 298822 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold479 SAMTools SNP 298823 298823 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold479 SAMTools SNP 300362 300362 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold479 SAMTools SNP 302501 302501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1262%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D334%2C81%2C566%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 303807 303807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C53%2C20%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0054%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 303813 303813 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C95%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold479 SAMTools SNP 304176 304176 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C10%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D3.5e-06%2C2.1e-09%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold479 SAMTools SNP 304197 304197 9.08 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold479 SAMTools SNP 304211 304211 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold479 SAMTools SNP 304223 304223 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold479 SAMTools SNP 305834 305834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C276%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 305835 305835 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C272%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold479 SAMTools SNP 309592 309592 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.9e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C213:41 scaffold479 SAMTools SNP 309828 309828 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold479 SAMTools SNP 309841 309841 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold479 SAMTools SNP 309954 309954 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold479 SAMTools SNP 310257 310257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold479 SAMTools SNP 310287 310287 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold479 SAMTools SNP 314212 314212 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C10:13 scaffold479 SAMTools SNP 314246 314246 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 315 315 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 370 370 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 1116 1116 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold48 SAMTools SNP 1145 1145 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold48 SAMTools SNP 1973 1973 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 2003 2003 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 2006 2006 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 27354 27354 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 50531 50531 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 50794 50794 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold48 SAMTools SNP 86860 86860 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold48 SAMTools SNP 87795 87795 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold48 SAMTools SNP 87797 87797 138 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold48 SAMTools SNP 87826 87826 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold48 SAMTools SNP 87836 87836 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold48 SAMTools SNP 88162 88162 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold48 SAMTools SNP 88458 88458 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold48 SAMTools SNP 90064 90064 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold48 SAMTools SNP 91353 91353 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold48 SAMTools SNP 91404 91404 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold48 SAMTools SNP 91434 91434 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 92648 92648 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C50%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.17%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 92711 92711 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C3%2C5%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold48 SAMTools SNP 92744 92744 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C18%2C51%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.0054%2C1.7e-101%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C254:75 scaffold48 SAMTools SNP 92834 92834 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C18%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C5.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C94:97 scaffold48 SAMTools SNP 93461 93461 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold48 SAMTools SNP 93740 93740 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold48 SAMTools SNP 93746 93746 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 94422 94422 45 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.38%2C4.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold48 SAMTools SNP 94446 94446 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.34%2C3.9e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold48 SAMTools SNP 95311 95311 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C54%2C0:76 scaffold48 SAMTools SNP 95455 95455 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold48 SAMTools SNP 114500 114500 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold48 SAMTools SNP 114551 114551 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold48 SAMTools SNP 114659 114659 28.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold48 SAMTools SNP 130823 130823 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold48 SAMTools SNP 130885 130885 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold48 SAMTools SNP 200031 200031 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 200305 200305 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold48 SAMTools SNP 201552 201552 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold48 SAMTools SNP 203492 203492 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.28%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold48 SAMTools SNP 203501 203501 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold48 SAMTools SNP 203507 203507 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold48 SAMTools SNP 203531 203531 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold48 SAMTools SNP 204470 204470 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold48 SAMTools SNP 205401 205401 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold48 SAMTools SNP 205446 205446 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold48 SAMTools SNP 206719 206719 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold48 SAMTools SNP 206740 206740 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 206755 206755 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 211203 211203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold48 SAMTools SNP 211210 211210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.063%2C0.024%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold48 SAMTools SNP 212476 212476 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 212551 212551 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.28%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C228:99 scaffold48 SAMTools SNP 212846 212846 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C4%2C39%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.63%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold48 SAMTools SNP 225018 225018 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C215:99 scaffold48 SAMTools SNP 225023 225023 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.16%2C0.017%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C219:99 scaffold48 SAMTools SNP 225206 225206 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D70%3BPV4%3D9.1e-07%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold48 SAMTools SNP 225286 225286 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C0%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C6.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold48 SAMTools SNP 225747 225747 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 225769 225769 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold48 SAMTools SNP 226417 226417 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold48 SAMTools SNP 226450 226450 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C5%2C22%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.32%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold48 SAMTools SNP 226695 226695 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold48 SAMTools SNP 235515 235515 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 236601 236601 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold48 SAMTools SNP 236607 236607 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 236661 236661 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold48 SAMTools SNP 236678 236678 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold48 SAMTools SNP 261036 261036 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold48 SAMTools SNP 272394 272394 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold48 SAMTools SNP 272404 272404 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold48 SAMTools SNP 272956 272956 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C2%2C2%3BMQ%3D49%3BFQ%3D51%3BPV4%3D0.25%2C1%2C0.011%2C8.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold48 SAMTools SNP 273635 273635 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C18%3BMQ%3D46%3BFQ%3D-22%3BPV4%3D1%2C0.45%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C5:8 scaffold48 SAMTools SNP 273871 273871 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 273883 273883 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 274306 274306 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold48 SAMTools SNP 275252 275252 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold48 SAMTools SNP 275784 275784 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C7%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold48 SAMTools SNP 278570 278570 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C16%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.12%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C191:99 scaffold48 SAMTools SNP 279049 279049 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C5.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C150:43 scaffold48 SAMTools SNP 279178 279178 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 279186 279186 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 282913 282913 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold48 SAMTools SNP 292698 292698 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C93%2C0:99 scaffold48 SAMTools SNP 293001 293001 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C8%2C7%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.049%2C2.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold48 SAMTools SNP 293265 293265 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold48 SAMTools SNP 293454 293454 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C60%2C0:99 scaffold48 SAMTools SNP 294426 294426 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C10%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.35%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold48 SAMTools SNP 294467 294467 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold48 SAMTools SNP 297461 297461 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold48 SAMTools SNP 297505 297505 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold48 SAMTools SNP 297520 297520 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.27%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold48 SAMTools SNP 297733 297733 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 298239 298239 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold48 SAMTools SNP 298306 298306 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold48 SAMTools SNP 305177 305177 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 312334 312334 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold48 SAMTools SNP 313122 313122 9.97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold48 SAMTools SNP 339670 339670 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 339718 339718 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 340226 340226 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold48 SAMTools SNP 343221 343221 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold48 SAMTools SNP 371435 371435 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D3%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C126%2C0:93 scaffold48 SAMTools SNP 374550 374550 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C30%2C0:57 scaffold48 SAMTools SNP 374563 374563 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D41%3BFQ%3D73.6%3BPV4%3D1%2C0.31%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C106:99 scaffold48 SAMTools SNP 374998 374998 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold48 SAMTools SNP 375789 375789 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C23:26 scaffold48 SAMTools SNP 375794 375794 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C68:71 scaffold48 SAMTools SNP 376444 376444 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold48 SAMTools SNP 376534 376534 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.55%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold48 SAMTools SNP 377159 377159 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.51%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C192:71 scaffold48 SAMTools SNP 377161 377161 182 . . REF=A;ALT=C,T,G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-55;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C30%2C2%2C197%2C0%2C194%2C197%2C0%2C174%2C194:53 scaffold48 SAMTools SNP 379117 379117 43.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold48 SAMTools SNP 380941 380941 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold48 SAMTools SNP 382248 382248 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C1%2C15%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.0049%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold48 SAMTools SNP 383184 383184 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 383214 383214 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 383551 383551 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold48 SAMTools SNP 383597 383597 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold48 SAMTools SNP 383602 383602 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold48 SAMTools SNP 383741 383741 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold48 SAMTools SNP 383765 383765 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold48 SAMTools SNP 383773 383773 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold48 SAMTools SNP 383843 383843 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold48 SAMTools SNP 384246 384246 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold48 SAMTools SNP 384255 384255 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold48 SAMTools SNP 384825 384825 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 385261 385261 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold48 SAMTools SNP 385291 385291 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 387040 387040 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 387070 387070 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 418243 418243 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold48 SAMTools SNP 420265 420265 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold48 SAMTools SNP 420289 420289 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold48 SAMTools SNP 420467 420467 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold48 SAMTools SNP 420469 420469 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold48 SAMTools SNP 421816 421816 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold48 SAMTools SNP 424344 424344 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 427684 427684 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.2e-19%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C225:63 scaffold48 SAMTools SNP 428321 428321 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00038%2C0.43%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold48 SAMTools SNP 428754 428754 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold48 SAMTools SNP 430724 430724 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 432716 432716 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 435527 435527 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold48 SAMTools SNP 435544 435544 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold48 SAMTools SNP 435602 435602 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C135:46 scaffold48 SAMTools SNP 436731 436731 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 439903 439903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C35%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold48 SAMTools SNP 439910 439910 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold48 SAMTools SNP 440068 440068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C124%2C11%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 442101 442101 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C18%2C41%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C4.4e-15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 442125 442125 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0027%2C0.39%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold48 SAMTools SNP 453746 453746 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 455543 455543 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold48 SAMTools SNP 455679 455679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 457647 457647 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold48 SAMTools SNP 457682 457682 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.051%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold48 SAMTools SNP 457849 457849 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C82:85 scaffold48 SAMTools SNP 460817 460817 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C221:99 scaffold48 SAMTools SNP 461614 461614 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 463712 463712 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold48 SAMTools SNP 463715 463715 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C49%2C9%2C6%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.58%2C1%2C1%2C8.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold48 SAMTools SNP 468228 468228 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold48 SAMTools SNP 468909 468909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold48 SAMTools SNP 471005 471005 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C26%2C0%3BMQ%3D47%3BFQ%3D163%3BPV4%3D0.01%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold48 SAMTools SNP 471021 471021 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C1%3BMQ%3D41%3BFQ%3D23%3BPV4%3D1%2C0.24%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C50:53 scaffold48 SAMTools SNP 471034 471034 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C3%2C0%3BMQ%3D47%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold48 SAMTools SNP 471662 471662 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D6%2C5%2C98%2C8%3BMQ%3D49%3BFQ%3D-5.45%3BPV4%3D0.0024%2C1%2C1%2C3.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold48 SAMTools SNP 472118 472118 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C9%2C61%2C121%3BMQ%3D45%3BFQ%3D-270%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C243%2C0:99 scaffold48 SAMTools SNP 478216 478216 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold48 SAMTools SNP 483471 483471 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C16%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C250:99 scaffold48 SAMTools SNP 483579 483579 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C18%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold48 SAMTools SNP 484063 484063 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C63%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold48 SAMTools SNP 484079 484079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C40%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 487982 487982 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold48 SAMTools SNP 490983 490983 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 490995 490995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold48 SAMTools SNP 515743 515743 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.37%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold48 SAMTools SNP 515760 515760 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C148:34 scaffold48 SAMTools SNP 517069 517069 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.61%2C0.22%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold48 SAMTools SNP 517105 517105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 518665 518665 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C224:99 scaffold48 SAMTools SNP 518936 518936 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold48 SAMTools SNP 520059 520059 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold48 SAMTools SNP 520212 520212 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold48 SAMTools SNP 520834 520834 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold48 SAMTools SNP 521736 521736 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold48 SAMTools SNP 521748 521748 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C14%2C43%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00024%2C1.6e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold48 SAMTools SNP 522549 522549 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C69%2C0:99 scaffold48 SAMTools SNP 522672 522672 15.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold48 SAMTools SNP 522747 522747 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C13%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C122:66 scaffold48 SAMTools SNP 523568 523568 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C6%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C105%2C0:99 scaffold48 SAMTools SNP 523599 523599 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C93%2C0:99 scaffold48 SAMTools SNP 523632 523632 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.97%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C21:24 scaffold48 SAMTools SNP 524951 524951 29.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold48 SAMTools SNP 527635 527635 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold48 SAMTools SNP 528742 528742 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold48 SAMTools SNP 529081 529081 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 529128 529128 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 533009 533009 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold48 SAMTools SNP 533366 533366 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C223:99 scaffold48 SAMTools SNP 533749 533749 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold48 SAMTools SNP 534590 534590 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.25%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 535395 535395 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 536543 536543 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold48 SAMTools SNP 536603 536603 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold48 SAMTools SNP 537633 537633 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00019%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold48 SAMTools SNP 537642 537642 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold48 SAMTools SNP 539642 539642 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C7.5e-08%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C154:46 scaffold48 SAMTools SNP 539801 539801 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C48%2C0:93 scaffold48 SAMTools SNP 541798 541798 14.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold48 SAMTools SNP 541848 541848 6.17 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold48 SAMTools SNP 543679 543679 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.094%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C32:35 scaffold48 SAMTools SNP 543702 543702 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 561893 561893 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold48 SAMTools SNP 561983 561983 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 561989 561989 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 569848 569848 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 571428 571428 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold48 SAMTools SNP 571464 571464 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold48 SAMTools SNP 571503 571503 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0048%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C238:99 scaffold48 SAMTools SNP 571533 571533 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C197:99 scaffold48 SAMTools SNP 576127 576127 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold48 SAMTools SNP 579012 579012 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold48 SAMTools SNP 581114 581114 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold48 SAMTools SNP 581159 581159 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 581186 581186 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold48 SAMTools SNP 581552 581552 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold48 SAMTools SNP 581633 581633 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C15%2C0:27 scaffold48 SAMTools SNP 581759 581759 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C24%2C0:45 scaffold48 SAMTools SNP 581786 581786 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold48 SAMTools SNP 582283 582283 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold48 SAMTools SNP 582695 582695 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold48 SAMTools SNP 582779 582779 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold48 SAMTools SNP 583473 583473 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C239:99 scaffold48 SAMTools SNP 583758 583758 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C221:99 scaffold48 SAMTools SNP 583775 583775 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C149:31 scaffold48 SAMTools SNP 583794 583794 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold48 SAMTools SNP 583815 583815 75.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C12%2C0:21 scaffold48 SAMTools SNP 583944 583944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 584664 584664 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold48 SAMTools SNP 584693 584693 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.13%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C221:90 scaffold48 SAMTools SNP 584957 584957 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C116:99 scaffold48 SAMTools SNP 585647 585647 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C158:33 scaffold48 SAMTools SNP 589855 589855 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.081%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold48 SAMTools SNP 590541 590541 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold48 SAMTools SNP 593755 593755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold48 SAMTools SNP 595995 595995 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.54%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold48 SAMTools SNP 596013 596013 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 596025 596025 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 598486 598486 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.38%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 598525 598525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold48 SAMTools SNP 598537 598537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold48 SAMTools SNP 598723 598723 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold48 SAMTools SNP 599479 599479 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold48 SAMTools SNP 601391 601391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold48 SAMTools SNP 601627 601627 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C18%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1e-05%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold48 SAMTools SNP 601795 601795 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 601847 601847 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.44%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold48 SAMTools SNP 602092 602092 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold48 SAMTools SNP 602128 602128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold48 SAMTools SNP 602307 602307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 604230 604230 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold48 SAMTools SNP 605053 605053 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold48 SAMTools SNP 605652 605652 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C124:99 scaffold48 SAMTools SNP 606837 606837 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 606854 606854 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 611100 611100 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold48 SAMTools SNP 612727 612727 26.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold48 SAMTools SNP 613261 613261 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 614928 614928 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 620139 620139 5.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold48 SAMTools SNP 621340 621340 12.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold48 SAMTools SNP 622520 622520 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C5.9e-30%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 623430 623430 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold48 SAMTools SNP 623607 623607 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold48 SAMTools SNP 627267 627267 29.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold48 SAMTools SNP 630218 630218 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold48 SAMTools SNP 632748 632748 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 632766 632766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 648058 648058 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold48 SAMTools SNP 649413 649413 167 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold48 SAMTools SNP 651150 651150 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 653614 653614 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 654749 654749 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C14%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold48 SAMTools SNP 654792 654792 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.67%2C2.3e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold48 SAMTools SNP 656157 656157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 656460 656460 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C33%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D9.3e-07%2C2.1e-73%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold48 SAMTools SNP 663840 663840 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold48 SAMTools SNP 663852 663852 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold48 SAMTools SNP 663885 663885 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C93%2C0:99 scaffold48 SAMTools SNP 664613 664613 178 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C242:99 scaffold48 SAMTools SNP 667790 667790 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.063%2C3.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold48 SAMTools SNP 667864 667864 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.035%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold48 SAMTools SNP 668093 668093 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold48 SAMTools SNP 668664 668664 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.35%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold48 SAMTools SNP 669316 669316 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold48 SAMTools SNP 669749 669749 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold48 SAMTools SNP 670384 670384 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C205:99 scaffold48 SAMTools SNP 670411 670411 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C184:99 scaffold48 SAMTools SNP 670420 670420 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C243:99 scaffold48 SAMTools SNP 674047 674047 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D13%3BFQ%3D-33%3BPV4%3D1%2C9.1e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold48 SAMTools SNP 674715 674715 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold48 SAMTools SNP 675317 675317 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D16%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C87%2C0:99 scaffold48 SAMTools SNP 677744 677744 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold48 SAMTools SNP 707864 707864 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold48 SAMTools SNP 735999 735999 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold48 SAMTools SNP 742184 742184 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold48 SAMTools SNP 743779 743779 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold48 SAMTools SNP 755265 755265 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold48 SAMTools SNP 759958 759958 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold48 SAMTools SNP 760994 760994 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold48 SAMTools SNP 761344 761344 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 761394 761394 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 761400 761400 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold48 SAMTools SNP 762402 762402 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold48 SAMTools SNP 762411 762411 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold48 SAMTools SNP 763591 763591 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold48 SAMTools SNP 775401 775401 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 775984 775984 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 775994 775994 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold48 SAMTools SNP 776241 776241 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold48 SAMTools SNP 776286 776286 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 776383 776383 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C138:53 scaffold48 SAMTools SNP 781437 781437 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold48 SAMTools SNP 781438 781438 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold48 SAMTools SNP 782200 782200 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold48 SAMTools SNP 803880 803880 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 803912 803912 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 803936 803936 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold48 SAMTools SNP 804026 804026 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C77:52 scaffold48 SAMTools SNP 804419 804419 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0.012%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold48 SAMTools SNP 815712 815712 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C38:41 scaffold48 SAMTools SNP 818632 818632 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold48 SAMTools SNP 824229 824229 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold48 SAMTools SNP 824551 824551 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C161:33 scaffold48 SAMTools SNP 825516 825516 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C162:74 scaffold48 SAMTools SNP 834378 834378 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold48 SAMTools SNP 839357 839357 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D34.5%3BPV4%3D0.29%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C65:64 scaffold48 SAMTools SNP 841884 841884 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold48 SAMTools SNP 843316 843316 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C8.8e-19%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C184:99 scaffold48 SAMTools SNP 843623 843623 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C57%2C0:87 scaffold48 SAMTools SNP 843802 843802 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C24%2C0:45 scaffold48 SAMTools SNP 845370 845370 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 845499 845499 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold48 SAMTools SNP 846754 846754 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold48 SAMTools SNP 848303 848303 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C127%2C3%2C28%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold48 SAMTools SNP 848309 848309 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C123%2C3%2C29%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold48 SAMTools SNP 850443 850443 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C6%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 851199 851199 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C64%2C38%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 851259 851259 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C7%2C108%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C2.5e-29%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 851799 851799 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C97%2C19%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.38%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 851807 851807 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C75%2C22%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 853602 853602 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold48 SAMTools SNP 853781 853781 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C0.041%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold48 SAMTools SNP 856371 856371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold48 SAMTools SNP 872691 872691 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold481 SAMTools SNP 880 880 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 976 976 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 3093 3093 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C33%2C0:63 scaffold481 SAMTools SNP 3126 3126 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold481 SAMTools SNP 3147 3147 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 3659 3659 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold481 SAMTools SNP 3955 3955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold481 SAMTools SNP 4003 4003 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold481 SAMTools SNP 4043 4043 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 5536 5536 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold481 SAMTools SNP 5555 5555 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 6005 6005 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 6050 6050 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold481 SAMTools SNP 7013 7013 201 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold481 SAMTools SNP 9366 9366 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold481 SAMTools SNP 9387 9387 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 9712 9712 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold481 SAMTools SNP 9760 9760 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold481 SAMTools SNP 10657 10657 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 11747 11747 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 12317 12317 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold481 SAMTools SNP 13185 13185 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.55%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C177:99 scaffold481 SAMTools SNP 13876 13876 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold481 SAMTools SNP 37284 37284 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 40303 40303 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold481 SAMTools SNP 41244 41244 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold481 SAMTools SNP 45417 45417 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D990%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C345%2C201%2C323%3BMQ%3D38%3BFQ%3D225%3BPV4%3D3.3e-05%2C5.7e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 48887 48887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold481 SAMTools SNP 49695 49695 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C22%2C130%2C0%3BMQ%3D47%3BFQ%3D225%3BPV4%3D4e-06%2C4.7e-07%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 49698 49698 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C9%2C151%2C12%3BMQ%3D47%3BFQ%3D84%3BPV4%3D1%2C0.47%2C0.42%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C39%2C251:99 scaffold481 SAMTools SNP 49703 49703 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C9%2C92%2C0%3BMQ%3D48%3BFQ%3D55%3BPV4%3D0.029%2C0.0025%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C220:85 scaffold481 SAMTools SNP 50490 50490 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 53848 53848 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4215%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C2036%2C180%2C1800%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.26%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 57002 57002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold481 SAMTools SNP 57789 57789 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C173:99 scaffold481 SAMTools SNP 58193 58193 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold481 SAMTools SNP 58498 58498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 59876 59876 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 59915 59915 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 59951 59951 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold481 SAMTools SNP 59960 59960 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold481 SAMTools SNP 60681 60681 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.52%2C0.041%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C158:99 scaffold481 SAMTools SNP 60696 60696 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold481 SAMTools SNP 60822 60822 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold481 SAMTools SNP 61154 61154 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C33%2C0:63 scaffold481 SAMTools SNP 61160 61160 15.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold481 SAMTools SNP 61921 61921 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold481 SAMTools SNP 61954 61954 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold481 SAMTools SNP 62405 62405 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold481 SAMTools SNP 63706 63706 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold481 SAMTools SNP 63766 63766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold481 SAMTools SNP 64060 64060 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold481 SAMTools SNP 64087 64087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold481 SAMTools SNP 64383 64383 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.043%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold481 SAMTools SNP 64951 64951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C48%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold481 SAMTools SNP 65396 65396 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C199:56 scaffold481 SAMTools SNP 65587 65587 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 66378 66378 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 66473 66473 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold481 SAMTools SNP 67130 67130 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 67147 67147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 67210 67210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 67234 67234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 67615 67615 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold481 SAMTools SNP 67869 67869 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold481 SAMTools SNP 67929 67929 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold481 SAMTools SNP 68029 68029 202 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold481 SAMTools SNP 68055 68055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold481 SAMTools SNP 68496 68496 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C39%2C0:75 scaffold481 SAMTools SNP 68517 68517 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C54%2C0:99 scaffold481 SAMTools SNP 68592 68592 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.68%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold481 SAMTools SNP 68832 68832 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C2.2e-24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 68997 68997 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C54%3BMQ%3D47%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold481 SAMTools SNP 70203 70203 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D4.63%3BPV4%3D1%2C0.0045%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C43:28 scaffold481 SAMTools SNP 70267 70267 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold481 SAMTools SNP 70738 70738 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold481 SAMTools SNP 70755 70755 55.8 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold481 SAMTools SNP 70781 70781 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 81319 81319 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 81329 81329 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold481 SAMTools SNP 81866 81866 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C1%3BMQ%3D12%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C255%2C0:99 scaffold481 SAMTools SNP 81892 81892 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D14%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C39%2C0:53 scaffold481 SAMTools SNP 81935 81935 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C72%2C0%2C33%3BMQ%3D10%3BFQ%3D-67%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C40%2C0:77 scaffold481 SAMTools SNP 82132 82132 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C65%2C0%2C30%3BMQ%3D12%3BFQ%3D-64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C37%2C0:71 scaffold481 SAMTools SNP 85099 85099 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D255%2C0%2C305%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 87778 87778 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C397%2C83%2C239%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.94%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 87862 87862 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D687%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D149%2C115%2C13%2C28%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.004%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold481 SAMTools SNP 88368 88368 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold481 SAMTools SNP 97596 97596 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold481 SAMTools SNP 103018 103018 45.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold481 SAMTools SNP 105711 105711 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C256%2C0%2C201%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 105720 105720 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold481 SAMTools SNP 111598 111598 59.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold481 SAMTools SNP 111640 111640 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 113471 113471 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 121948 121948 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 121969 121969 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 122389 122389 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold481 SAMTools SNP 150705 150705 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.28%2C0.48%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold481 SAMTools SNP 151303 151303 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.14%2C0.16%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold481 SAMTools SNP 151728 151728 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 153814 153814 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.49%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold481 SAMTools SNP 155251 155251 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold481 SAMTools SNP 155310 155310 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C223:99 scaffold481 SAMTools SNP 155707 155707 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 160338 160338 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold481 SAMTools SNP 160353 160353 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold481 SAMTools SNP 163202 163202 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold481 SAMTools SNP 163229 163229 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.14%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold481 SAMTools SNP 163415 163415 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.062%2C0.3%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold481 SAMTools SNP 163449 163449 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.15%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold481 SAMTools SNP 163599 163599 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C1%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold481 SAMTools SNP 163774 163774 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold481 SAMTools SNP 164053 164053 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.55%2C0.0013%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C216:89 scaffold481 SAMTools SNP 166833 166833 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold481 SAMTools SNP 167088 167088 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold481 SAMTools SNP 167786 167786 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.42%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C11:14 scaffold481 SAMTools SNP 168098 168098 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold481 SAMTools SNP 168247 168247 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.032%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold481 SAMTools SNP 168253 168253 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.48%2C0.026%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold481 SAMTools SNP 168254 168254 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold481 SAMTools SNP 168334 168334 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 168755 168755 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C245:69 scaffold481 SAMTools SNP 170684 170684 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold481 SAMTools SNP 172419 172419 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold481 SAMTools SNP 172527 172527 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold481 SAMTools SNP 173068 173068 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C21%2C0:39 scaffold481 SAMTools SNP 173464 173464 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold481 SAMTools SNP 173509 173509 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold481 SAMTools SNP 175006 175006 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold481 SAMTools SNP 176036 176036 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00028%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C88:37 scaffold481 SAMTools SNP 176568 176568 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 176616 176616 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 177182 177182 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold481 SAMTools SNP 177455 177455 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 177472 177472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 198715 198715 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold481 SAMTools SNP 243049 243049 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold481 SAMTools SNP 245115 245115 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 248174 248174 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 249904 249904 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold481 SAMTools SNP 249913 249913 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0057%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold481 SAMTools SNP 250673 250673 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold481 SAMTools SNP 251247 251247 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold481 SAMTools SNP 252574 252574 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.43%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold481 SAMTools SNP 252667 252667 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 252673 252673 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold481 SAMTools SNP 253127 253127 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold481 SAMTools SNP 253170 253170 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.054%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C156:91 scaffold481 SAMTools SNP 253196 253196 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C117:99 scaffold481 SAMTools SNP 253330 253330 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold481 SAMTools SNP 253827 253827 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.064%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C146:54 scaffold481 SAMTools SNP 253894 253894 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold481 SAMTools SNP 253924 253924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold481 SAMTools SNP 254643 254643 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold481 SAMTools SNP 254941 254941 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold481 SAMTools SNP 256588 256588 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold481 SAMTools SNP 258154 258154 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 258325 258325 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold481 SAMTools SNP 258328 258328 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold481 SAMTools SNP 259787 259787 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C35%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.49%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold481 SAMTools SNP 259995 259995 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C63%2C0%2C13%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.59%2C1e-05%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold481 SAMTools SNP 260435 260435 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C36%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D0.23%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold481 SAMTools SNP 260485 260485 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.3%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold481 SAMTools SNP 263197 263197 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 265560 265560 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold481 SAMTools SNP 265569 265569 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold481 SAMTools SNP 265815 265815 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C214:50 scaffold481 SAMTools SNP 294771 294771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 295729 295729 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C77:80 scaffold481 SAMTools SNP 296999 296999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C146%2C14%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 300401 300401 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.35%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold481 SAMTools SNP 300682 300682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 300711 300711 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold481 SAMTools SNP 300770 300770 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 301205 301205 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C12:15 scaffold481 SAMTools SNP 301206 301206 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold481 SAMTools SNP 303373 303373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 307556 307556 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 307567 307567 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 325402 325402 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 325723 325723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold481 SAMTools SNP 325729 325729 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold481 SAMTools SNP 333848 333848 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.58%2C0.00099%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold481 SAMTools SNP 335018 335018 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold481 SAMTools SNP 335054 335054 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold481 SAMTools SNP 340762 340762 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold481 SAMTools SNP 350803 350803 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold481 SAMTools SNP 351843 351843 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold481 SAMTools SNP 351990 351990 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.64%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold481 SAMTools SNP 352951 352951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold481 SAMTools SNP 354419 354419 87.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C21%2C0:39 scaffold481 SAMTools SNP 355531 355531 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 361881 361881 62 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold481 SAMTools SNP 362369 362369 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 364072 364072 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 364090 364090 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 369757 369757 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold481 SAMTools SNP 369890 369890 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold481 SAMTools SNP 370252 370252 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold481 SAMTools SNP 371583 371583 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.065%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold481 SAMTools SNP 371622 371622 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C15%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold481 SAMTools SNP 371623 371623 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C16%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.055%2C1.2e-07%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold481 SAMTools SNP 372861 372861 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C219:99 scaffold481 SAMTools SNP 372867 372867 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold481 SAMTools SNP 373067 373067 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold481 SAMTools SNP 373097 373097 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold481 SAMTools SNP 373327 373327 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold481 SAMTools SNP 373378 373378 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold481 SAMTools SNP 373399 373399 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 373558 373558 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C3%2C7%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold481 SAMTools SNP 373594 373594 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold481 SAMTools SNP 373763 373763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.39%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 373778 373778 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C0.41%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 375252 375252 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 383104 383104 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 388745 388745 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C99:48 scaffold481 SAMTools SNP 392389 392389 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 392408 392408 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 404411 404411 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold481 SAMTools SNP 415889 415889 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold481 SAMTools SNP 415909 415909 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold481 SAMTools SNP 416644 416644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 416725 416725 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 416983 416983 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold481 SAMTools SNP 417004 417004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold481 SAMTools SNP 418313 418313 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C4%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.072%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold481 SAMTools SNP 420177 420177 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 420292 420292 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 420306 420306 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold481 SAMTools SNP 420629 420629 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.033%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold481 SAMTools SNP 420671 420671 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00043%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 420874 420874 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 423911 423911 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 423983 423983 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold481 SAMTools SNP 423995 423995 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold481 SAMTools SNP 424007 424007 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold481 SAMTools SNP 425746 425746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold481 SAMTools SNP 425767 425767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 426619 426619 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold481 SAMTools SNP 426966 426966 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 427471 427471 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C29%2C0%2C32%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1.5e-07%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold481 SAMTools SNP 427498 427498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C41%2C25%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 427916 427916 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 428135 428135 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 428552 428552 29.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold481 SAMTools SNP 428662 428662 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C156:98 scaffold481 SAMTools SNP 429196 429196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold481 SAMTools SNP 429230 429230 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.065%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold481 SAMTools SNP 430673 430673 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold481 SAMTools SNP 430706 430706 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold481 SAMTools SNP 430725 430725 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold481 SAMTools SNP 430748 430748 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold481 SAMTools SNP 431243 431243 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 432195 432195 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold481 SAMTools SNP 432198 432198 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.46%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold481 SAMTools SNP 432285 432285 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.61%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold481 SAMTools SNP 432591 432591 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C35%2C1%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.056%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold481 SAMTools SNP 432613 432613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C34%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold481 SAMTools SNP 432639 432639 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold481 SAMTools SNP 432657 432657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold481 SAMTools SNP 432672 432672 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C55%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold481 SAMTools SNP 444064 444064 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C160%2C0:99 scaffold481 SAMTools SNP 444162 444162 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C51%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-05%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 445075 445075 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold481 SAMTools SNP 445201 445201 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.4%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 446927 446927 51 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C36%2C0:69 scaffold481 SAMTools SNP 518965 518965 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 518989 518989 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C24%2C0:45 scaffold481 SAMTools SNP 519395 519395 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold481 SAMTools SNP 519888 519888 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold481 SAMTools SNP 519975 519975 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold481 SAMTools SNP 519981 519981 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.6%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold481 SAMTools SNP 520020 520020 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.27%2C0.00058%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold481 SAMTools SNP 520763 520763 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold481 SAMTools SNP 538726 538726 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold481 SAMTools SNP 563233 563233 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold481 SAMTools SNP 565160 565160 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C12%2C49%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 565197 565197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 565547 565547 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C47%2C32%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 565688 565688 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D9.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C233:99 scaffold481 SAMTools SNP 565715 565715 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold481 SAMTools SNP 565896 565896 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C241:99 scaffold481 SAMTools SNP 566806 566806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C26%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold481 SAMTools SNP 566863 566863 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold481 SAMTools SNP 566892 566892 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 566911 566911 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C4%2C7%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.011%2C0.0012%2C1%2C8.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold481 SAMTools SNP 567282 567282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 567315 567315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 567817 567817 196 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C40%2C13%2C212%2C0%2C209:51 scaffold481 SAMTools SNP 569496 569496 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold481 SAMTools SNP 569525 569525 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold481 SAMTools SNP 569843 569843 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold481 SAMTools SNP 570283 570283 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold481 SAMTools SNP 570295 570295 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 571357 571357 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 571381 571381 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold481 SAMTools SNP 572400 572400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C33%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold481 SAMTools SNP 572414 572414 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C12%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0016%2C2.3e-08%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold481 SAMTools SNP 573573 573573 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.34%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 583511 583511 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 584792 584792 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 585827 585827 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold481 SAMTools SNP 586194 586194 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold481 SAMTools SNP 586215 586215 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold481 SAMTools SNP 588480 588480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 615274 615274 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold481 SAMTools SNP 615316 615316 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold481 SAMTools SNP 615447 615447 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold481 SAMTools SNP 615479 615479 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold481 SAMTools SNP 615482 615482 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0068%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold481 SAMTools SNP 615495 615495 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold481 SAMTools SNP 616865 616865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold481 SAMTools SNP 616909 616909 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold481 SAMTools SNP 617168 617168 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 617195 617195 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold481 SAMTools SNP 617261 617261 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.033%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold481 SAMTools SNP 617703 617703 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C4%2C19%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.71%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold481 SAMTools SNP 617739 617739 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C19%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.46%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold481 SAMTools SNP 618368 618368 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C225:99 scaffold481 SAMTools SNP 619133 619133 73.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold481 SAMTools SNP 619140 619140 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold481 SAMTools SNP 622114 622114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold481 SAMTools SNP 622305 622305 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold481 SAMTools SNP 622848 622848 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C23:26 scaffold481 SAMTools SNP 622871 622871 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 623026 623026 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold481 SAMTools SNP 623078 623078 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold481 SAMTools SNP 624255 624255 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold481 SAMTools SNP 624308 624308 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold481 SAMTools SNP 624736 624736 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 624926 624926 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold481 SAMTools SNP 624955 624955 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold481 SAMTools SNP 625439 625439 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C198:99 scaffold481 SAMTools SNP 625445 625445 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.27%2C0.045%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold481 SAMTools SNP 625454 625454 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold481 SAMTools SNP 625534 625534 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C8.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold481 SAMTools SNP 625557 625557 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C191:99 scaffold481 SAMTools SNP 627496 627496 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C66%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 627546 627546 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C55%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C2.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 628397 628397 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C40%2C16%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold481 SAMTools SNP 628421 628421 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C66%2C16%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.0029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold481 SAMTools SNP 628761 628761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C19%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.056%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold481 SAMTools SNP 629131 629131 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C19%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.43%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 630154 630154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C36%2C47%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 631235 631235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C39%2C25%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.27%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 631265 631265 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 631644 631644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C6%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 631674 631674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C37%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold481 SAMTools SNP 633054 633054 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 633554 633554 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C50%2C6%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 633713 633713 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C6.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 633879 633879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.011%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 633894 633894 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C2%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.11%2C0.013%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold481 SAMTools SNP 634562 634562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 634604 634604 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C37%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-06%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 635980 635980 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C210:41 scaffold481 SAMTools SNP 636124 636124 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.15%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C210:41 scaffold481 SAMTools SNP 642746 642746 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 644170 644170 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold481 SAMTools SNP 644182 644182 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold481 SAMTools SNP 644185 644185 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 644571 644571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold481 SAMTools SNP 644615 644615 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C14%2C19%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.051%2C2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold481 SAMTools SNP 644646 644646 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.7e-15%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold481 SAMTools SNP 644724 644724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C42%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C0.013%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 645358 645358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 645383 645383 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.19%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold481 SAMTools SNP 645897 645897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold481 SAMTools SNP 645921 645921 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold481 SAMTools SNP 646800 646800 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C5%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold481 SAMTools SNP 646803 646803 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold481 SAMTools SNP 647078 647078 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold481 SAMTools SNP 647139 647139 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D550%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C97%2C159%2C98%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 650332 650332 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C62%2C1%2C17%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.067%2C1%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold481 SAMTools SNP 650333 650333 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C37%2C0%2C20%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.00044%2C1%2C1%2C4.8e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold481 SAMTools SNP 650372 650372 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C19%2C13%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold481 SAMTools SNP 650396 650396 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C20%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold481 SAMTools SNP 650643 650643 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C30%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold481 SAMTools SNP 654322 654322 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 655312 655312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C37%2C27%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 655441 655441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C129%2C1%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.058%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 655949 655949 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold481 SAMTools SNP 655958 655958 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.42%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 655959 655959 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.13%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold481 SAMTools SNP 655979 655979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C60%3BMQ%3D50%3BFQ%3D-179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C0:99 scaffold481 SAMTools SNP 656284 656284 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 656774 656774 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold481 SAMTools SNP 656792 656792 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold481 SAMTools SNP 656849 656849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C0.38%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold481 SAMTools SNP 657365 657365 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C9%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.48%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold481 SAMTools SNP 657387 657387 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C11%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.38%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold481 SAMTools SNP 657702 657702 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C10%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold481 SAMTools SNP 657735 657735 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C21%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold481 SAMTools SNP 658249 658249 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C1%3BMQ%3D49%3BFQ%3D201%3BPV4%3D1%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold481 SAMTools SNP 658279 658279 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C10%2C0%3BMQ%3D49%3BFQ%3D121%3BPV4%3D0.057%2C0.01%2C0.099%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold481 SAMTools SNP 658312 658312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 658321 658321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 658378 658378 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C4:7 scaffold481 SAMTools SNP 658389 658389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold481 SAMTools SNP 659504 659504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold481 SAMTools SNP 659534 659534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 659636 659636 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.1e-06%2C3.1e-07%2C1%2C4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold481 SAMTools SNP 659901 659901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C88%2C23%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 660247 660247 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 661151 661151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 661196 661196 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C14%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 661220 661220 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold481 SAMTools SNP 661256 661256 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C41%2C1%2C26%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.016%2C8.8e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold481 SAMTools SNP 661301 661301 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold481 SAMTools SNP 661307 661307 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C5%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C0.04%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold481 SAMTools SNP 661775 661775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.097%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 661787 661787 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold481 SAMTools SNP 661859 661859 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C6%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 662530 662530 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 662539 662539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 663076 663076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.4%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 663112 663112 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 663142 663142 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 663382 663382 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C77%2C1%2C9%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.11%2C1%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C186:83 scaffold481 SAMTools SNP 663931 663931 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold481 SAMTools SNP 664442 664442 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold481 SAMTools SNP 664449 664449 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.14%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold481 SAMTools SNP 664451 664451 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold481 SAMTools SNP 664463 664463 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold481 SAMTools SNP 664658 664658 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 664682 664682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C13%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold481 SAMTools SNP 665033 665033 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C29%2C1%2C12%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.00044%2C0.099%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold481 SAMTools SNP 665045 665045 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 666016 666016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 666414 666414 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 666443 666443 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C20%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 667162 667162 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C2%2C36%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-07%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 667211 667211 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C87%2C22%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold481 SAMTools SNP 668402 668402 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C291%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 671555 671555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 671567 671567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C27%2C88%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.098%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 671639 671639 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C70%2C57%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 672150 672150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C13%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold481 SAMTools SNP 672177 672177 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C57%2C42%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C2.4e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 674067 674067 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C12%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C3e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 677640 677640 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C229:84 scaffold481 SAMTools SNP 677652 677652 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold481 SAMTools SNP 692400 692400 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 692448 692448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold481 SAMTools SNP 693893 693893 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.34%2C0.12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold481 SAMTools SNP 694275 694275 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold481 SAMTools SNP 694290 694290 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold481 SAMTools SNP 694336 694336 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold481 SAMTools SNP 695033 695033 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.39%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold481 SAMTools SNP 695036 695036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold481 SAMTools SNP 695987 695987 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold481 SAMTools SNP 697947 697947 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold481 SAMTools SNP 698230 698230 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold481 SAMTools SNP 698236 698236 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold481 SAMTools SNP 698294 698294 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.38%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold481 SAMTools SNP 698427 698427 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold481 SAMTools SNP 699034 699034 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold481 SAMTools SNP 699079 699079 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold481 SAMTools SNP 699103 699103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold481 SAMTools SNP 700061 700061 49.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold481 SAMTools SNP 700709 700709 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 700724 700724 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold481 SAMTools SNP 700861 700861 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.47%2C0.28%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold481 SAMTools SNP 701382 701382 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C63%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 701391 701391 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C0%2C45%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 701644 701644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 701674 701674 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C52%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold481 SAMTools SNP 701764 701764 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C54%2C0:99 scaffold481 SAMTools SNP 702419 702419 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold481 SAMTools SNP 703026 703026 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C12%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.2%2C2.4e-34%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C246:76 scaffold481 SAMTools SNP 703353 703353 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C44:47 scaffold481 SAMTools SNP 703810 703810 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C84%2C0:99 scaffold481 SAMTools SNP 705503 705503 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C227:28 scaffold481 SAMTools SNP 706594 706594 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 706630 706630 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C66%2C2%2C40%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.031%2C0.012%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold481 SAMTools SNP 706980 706980 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C13%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 707130 707130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold481 SAMTools SNP 707178 707178 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C60%2C6%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold481 SAMTools SNP 707568 707568 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C14%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold481 SAMTools SNP 707833 707833 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C44%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold481 SAMTools SNP 708012 708012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C25%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 708057 708057 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C21%2C3%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.011%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold481 SAMTools SNP 708183 708183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C44%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold481 SAMTools SNP 709209 709209 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C22%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C253:99 scaffold481 SAMTools SNP 709268 709268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 709269 709269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold481 SAMTools SNP 710995 710995 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 714901 714901 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 716016 716016 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C84%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold481 SAMTools SNP 717169 717169 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold481 SAMTools SNP 717262 717262 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.13%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold481 SAMTools SNP 717708 717708 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold481 SAMTools SNP 717735 717735 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold481 SAMTools SNP 718863 718863 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.68%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold481 SAMTools SNP 718869 718869 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.33%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 718893 718893 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.33%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold481 SAMTools SNP 720255 720255 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.14%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C218:99 scaffold481 SAMTools SNP 720285 720285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold481 SAMTools SNP 720423 720423 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold481 SAMTools SNP 720654 720654 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold481 SAMTools SNP 720705 720705 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold481 SAMTools SNP 721189 721189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold481 SAMTools SNP 722918 722918 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.45%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold481 SAMTools SNP 722927 722927 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold481 SAMTools SNP 723204 723204 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold481 SAMTools SNP 723225 723225 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold481 SAMTools SNP 723875 723875 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold481 SAMTools SNP 723905 723905 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold481 SAMTools SNP 724147 724147 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold481 SAMTools SNP 725169 725169 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C24%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold481 SAMTools SNP 725603 725603 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C1%2C25%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.44%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold481 SAMTools SNP 725612 725612 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C25%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C253:99 scaffold481 SAMTools SNP 732592 732592 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C229:56 scaffold481 SAMTools SNP 737283 737283 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C2.6e-25%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C237:99 scaffold481 SAMTools SNP 738951 738951 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C45%2C21%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1.3e-14%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 739555 739555 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 739951 739951 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold481 SAMTools SNP 743897 743897 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C57:60 scaffold481 SAMTools SNP 744002 744002 9.08 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold481 SAMTools SNP 747675 747675 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.11%2C0.0065%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C201:47 scaffold481 SAMTools SNP 747743 747743 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold481 SAMTools SNP 747749 747749 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold481 SAMTools SNP 747782 747782 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 747833 747833 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 747991 747991 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold481 SAMTools SNP 748048 748048 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold481 SAMTools SNP 750401 750401 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.086%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold481 SAMTools SNP 750555 750555 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C1.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold481 SAMTools SNP 750984 750984 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 751840 751840 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold481 SAMTools SNP 756102 756102 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold481 SAMTools SNP 756904 756904 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C156:99 scaffold481 SAMTools SNP 759532 759532 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.2%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold481 SAMTools SNP 760383 760383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 760413 760413 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C235:99 scaffold481 SAMTools SNP 771004 771004 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold481 SAMTools SNP 773469 773469 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 773489 773489 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C192%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 773500 773500 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold481 SAMTools SNP 774226 774226 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C26%2C64%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.00029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold481 SAMTools SNP 774240 774240 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C1%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold481 SAMTools SNP 774849 774849 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C0%2C12%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.32%2C4.5e-08%2C1%2C9.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold481 SAMTools SNP 775812 775812 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold481 SAMTools SNP 775837 775837 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold481 SAMTools SNP 777056 777056 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 777062 777062 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 779270 779270 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold481 SAMTools SNP 779330 779330 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 780122 780122 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 780265 780265 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C237:59 scaffold481 SAMTools SNP 801804 801804 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 805931 805931 43.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold481 SAMTools SNP 810293 810293 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 810804 810804 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 814661 814661 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C24%2C0:45 scaffold481 SAMTools SNP 815516 815516 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 815896 815896 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 817758 817758 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold481 SAMTools SNP 817765 817765 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D41%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C203:28 scaffold481 SAMTools SNP 819218 819218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C26%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 819556 819556 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C27%2C39%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 819965 819965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C46%2C28%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 819995 819995 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C21%2C24%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.49%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 833620 833620 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C8.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C215:99 scaffold481 SAMTools SNP 837056 837056 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 837579 837579 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold481 SAMTools SNP 838267 838267 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C184:99 scaffold481 SAMTools SNP 838323 838323 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold481 SAMTools SNP 838404 838404 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.56%2C0.00011%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C248:78 scaffold481 SAMTools SNP 838434 838434 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold481 SAMTools SNP 838652 838652 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold481 SAMTools SNP 839025 839025 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C40:43 scaffold481 SAMTools SNP 839041 839041 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C109:58 scaffold481 SAMTools SNP 839153 839153 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 839490 839490 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 840387 840387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C48%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold481 SAMTools SNP 840631 840631 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C48%2C0%2C13%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold481 SAMTools SNP 840645 840645 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C0%2C12%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold481 SAMTools SNP 840690 840690 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold481 SAMTools SNP 840716 840716 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold481 SAMTools SNP 841585 841585 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.00026%2C6.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C236:28 scaffold481 SAMTools SNP 842505 842505 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.001%2C3e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C240:50 scaffold481 SAMTools SNP 842709 842709 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold481 SAMTools SNP 842985 842985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 843181 843181 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.43%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C126:99 scaffold481 SAMTools SNP 843210 843210 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C249:99 scaffold481 SAMTools SNP 843525 843525 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold481 SAMTools SNP 843734 843734 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold481 SAMTools SNP 843768 843768 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C228:99 scaffold481 SAMTools SNP 843770 843770 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.29%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C182:99 scaffold481 SAMTools SNP 844208 844208 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 844947 844947 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C51%2C0:99 scaffold481 SAMTools SNP 848513 848513 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold481 SAMTools SNP 851867 851867 71 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0%2C92%2C3%2C89:45 scaffold481 SAMTools SNP 851909 851909 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold481 SAMTools SNP 851918 851918 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold481 SAMTools SNP 852871 852871 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold481 SAMTools SNP 853133 853133 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C10%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold481 SAMTools SNP 853214 853214 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 853235 853235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 853418 853418 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C1%2C12%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.3%2C0.13%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C246:99 scaffold481 SAMTools SNP 853426 853426 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C31%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C244:99 scaffold481 SAMTools SNP 853462 853462 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C31%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C188:99 scaffold481 SAMTools SNP 858578 858578 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 859182 859182 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 860189 860189 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold481 SAMTools SNP 864310 864310 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C23%2C6%3BMQ%3D37%3BFQ%3D164%3BPV4%3D1%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C228:99 scaffold481 SAMTools SNP 890523 890523 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 891811 891811 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold481 SAMTools SNP 892025 892025 63.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold481 SAMTools SNP 894629 894629 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold481 SAMTools SNP 895028 895028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 909317 909317 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold481 SAMTools SNP 911303 911303 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold481 SAMTools SNP 923568 923568 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C43%2C41%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 926306 926306 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 926878 926878 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold481 SAMTools SNP 927091 927091 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C227%2C54%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 928572 928572 93.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold481 SAMTools SNP 929053 929053 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold481 SAMTools SNP 929101 929101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold481 SAMTools SNP 929245 929245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C237%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 929750 929750 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold481 SAMTools SNP 930857 930857 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 930928 930928 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 936742 936742 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C0%2C26%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold481 SAMTools SNP 936758 936758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C48%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold481 SAMTools SNP 1040630 1040630 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 1045639 1045639 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C220:69 scaffold481 SAMTools SNP 1045686 1045686 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D48%3BPV4%3D1%2C0.19%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C75:78 scaffold481 SAMTools SNP 1045690 1045690 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold481 SAMTools SNP 1045856 1045856 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C18%2C0:33 scaffold481 SAMTools SNP 1046421 1046421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 1046428 1046428 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 1047551 1047551 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.32%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C35:38 scaffold481 SAMTools SNP 1055231 1055231 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold481 SAMTools SNP 1059211 1059211 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C20%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C244:65 scaffold481 SAMTools SNP 1059976 1059976 55.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold481 SAMTools SNP 1060822 1060822 35.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold481 SAMTools SNP 1061716 1061716 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold481 SAMTools SNP 1062075 1062075 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold481 SAMTools SNP 1063644 1063644 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold481 SAMTools SNP 1064402 1064402 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D25%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.56%2C1%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold481 SAMTools SNP 1064446 1064446 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1066829 1066829 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold481 SAMTools SNP 1075844 1075844 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold481 SAMTools SNP 1075888 1075888 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold481 SAMTools SNP 1076260 1076260 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C0.48%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C223:99 scaffold481 SAMTools SNP 1076274 1076274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold481 SAMTools SNP 1076560 1076560 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C18%2C0:33 scaffold481 SAMTools SNP 1076575 1076575 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold481 SAMTools SNP 1076605 1076605 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold481 SAMTools SNP 1076689 1076689 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C255%2C0:99 scaffold481 SAMTools SNP 1077817 1077817 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.57%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold481 SAMTools SNP 1080416 1080416 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold481 SAMTools SNP 1080431 1080431 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold481 SAMTools SNP 1080482 1080482 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold481 SAMTools SNP 1080938 1080938 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C2.1e-20%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C201:75 scaffold481 SAMTools SNP 1081235 1081235 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold481 SAMTools SNP 1081466 1081466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold481 SAMTools SNP 1081847 1081847 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold481 SAMTools SNP 1082163 1082163 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold481 SAMTools SNP 1082383 1082383 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold481 SAMTools SNP 1082409 1082409 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold481 SAMTools SNP 1082445 1082445 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold481 SAMTools SNP 1082975 1082975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C35%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold481 SAMTools SNP 1083035 1083035 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C5.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1083275 1083275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold481 SAMTools SNP 1083284 1083284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold481 SAMTools SNP 1083500 1083500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C195%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 1084161 1084161 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 1084605 1084605 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold481 SAMTools SNP 1086462 1086462 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold481 SAMTools SNP 1086607 1086607 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C255%2C0:99 scaffold481 SAMTools SNP 1087113 1087113 45.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold481 SAMTools SNP 1088412 1088412 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold481 SAMTools SNP 1089234 1089234 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold481 SAMTools SNP 1089672 1089672 30.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold481 SAMTools SNP 1090682 1090682 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C55%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold481 SAMTools SNP 1091316 1091316 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C54%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold481 SAMTools SNP 1092233 1092233 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1092481 1092481 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C59%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold481 SAMTools SNP 1092566 1092566 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00047%2C3.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold481 SAMTools SNP 1095096 1095096 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold481 SAMTools SNP 1095098 1095098 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold481 SAMTools SNP 1095157 1095157 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold481 SAMTools SNP 1095447 1095447 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1095643 1095643 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C5%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1095706 1095706 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1.8e-06%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1095727 1095727 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.16%2C0.12%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold481 SAMTools SNP 1095742 1095742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C41%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1096051 1096051 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C5%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold481 SAMTools SNP 1097733 1097733 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C26%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold481 SAMTools SNP 1098198 1098198 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.53%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold481 SAMTools SNP 1099300 1099300 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D29%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.012%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold481 SAMTools SNP 1099336 1099336 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold481 SAMTools SNP 1100883 1100883 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C3%2C48%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold481 SAMTools SNP 1119207 1119207 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 1119234 1119234 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold481 SAMTools SNP 1121593 1121593 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold481 SAMTools SNP 1122995 1122995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold481 SAMTools SNP 1128207 1128207 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C245:99 scaffold481 SAMTools SNP 1133152 1133152 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C42%2C0:81 scaffold481 SAMTools SNP 1144888 1144888 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold481 SAMTools SNP 1149130 1149130 34.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold481 SAMTools SNP 1150760 1150760 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0184%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.047%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold481 SAMTools SNP 1150822 1150822 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C12%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.07%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold481 SAMTools SNP 1151360 1151360 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 1151458 1151458 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold481 SAMTools SNP 1151578 1151578 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.52%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C95:44 scaffold481 SAMTools SNP 1182898 1182898 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold481 SAMTools SNP 1183138 1183138 15.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold481 SAMTools SNP 1275481 1275481 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold481 SAMTools SNP 1289468 1289468 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold482 SAMTools SNP 21997 21997 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C15%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.14%2C1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold482 SAMTools SNP 23419 23419 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold482 SAMTools SNP 24303 24303 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C66%2C0:99 scaffold482 SAMTools SNP 37351 37351 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold482 SAMTools SNP 37719 37719 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.026%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C38:41 scaffold482 SAMTools SNP 37940 37940 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold482 SAMTools SNP 37969 37969 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1.9e-09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold482 SAMTools SNP 38680 38680 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C12%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.19%2C7.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold482 SAMTools SNP 38786 38786 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C51%2C0:99 scaffold482 SAMTools SNP 42440 42440 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold482 SAMTools SNP 46735 46735 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold482 SAMTools SNP 46756 46756 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C74%2C0%2C67%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0012%2C2.8e-22%2C1%2C6.9e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold482 SAMTools SNP 47985 47985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 49568 49568 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold482 SAMTools SNP 51221 51221 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 52456 52456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 52474 52474 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C0%2C20%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.55%2C0.12%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold482 SAMTools SNP 52633 52633 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold482 SAMTools SNP 54315 54315 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold482 SAMTools SNP 54970 54970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold482 SAMTools SNP 55602 55602 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold482 SAMTools SNP 55617 55617 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold482 SAMTools SNP 56001 56001 60.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold482 SAMTools SNP 56067 56067 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold482 SAMTools SNP 56082 56082 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold482 SAMTools SNP 56710 56710 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 56975 56975 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 57972 57972 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C16%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 58191 58191 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold482 SAMTools SNP 58538 58538 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold482 SAMTools SNP 59014 59014 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C203:99 scaffold482 SAMTools SNP 59044 59044 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.074%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 59056 59056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C44%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 59493 59493 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C7%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 59878 59878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C16%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold482 SAMTools SNP 60450 60450 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.066%2C4e-05%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold482 SAMTools SNP 60542 60542 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold482 SAMTools SNP 62967 62967 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.58%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold482 SAMTools SNP 62973 62973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.14%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold482 SAMTools SNP 62976 62976 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold482 SAMTools SNP 63084 63084 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C26%2C7%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.74%2C1%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold482 SAMTools SNP 63606 63606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C64%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 63763 63763 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 63979 63979 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C66%2C0:99 scaffold482 SAMTools SNP 64066 64066 65.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold482 SAMTools SNP 64231 64231 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold482 SAMTools SNP 64439 64439 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C14%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold482 SAMTools SNP 64703 64703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C16%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold482 SAMTools SNP 65274 65274 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold482 SAMTools SNP 65362 65362 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18%3BPV4%3D1%2C0.054%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C63:48 scaffold482 SAMTools SNP 65508 65508 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold482 SAMTools SNP 65631 65631 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C48%2C0:93 scaffold482 SAMTools SNP 66129 66129 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C9%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.11%2C0.0011%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold482 SAMTools SNP 66548 66548 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold482 SAMTools SNP 66551 66551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold482 SAMTools SNP 66632 66632 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C19%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold482 SAMTools SNP 67123 67123 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.19%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C73:76 scaffold482 SAMTools SNP 67132 67132 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C35:38 scaffold482 SAMTools SNP 67207 67207 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C29%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D4.7e-05%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold482 SAMTools SNP 67714 67714 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C3%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.071%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold482 SAMTools SNP 67731 67731 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C3%2C6%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.36%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold482 SAMTools SNP 67779 67779 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 68461 68461 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0078%2C4.8e-25%2C1%2C7.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold482 SAMTools SNP 68542 68542 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.088%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold482 SAMTools SNP 68560 68560 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold482 SAMTools SNP 68845 68845 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.42%2C0.29%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C221:99 scaffold482 SAMTools SNP 68917 68917 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D23%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold482 SAMTools SNP 69010 69010 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C23%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.28%2C5.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold482 SAMTools SNP 69091 69091 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.018%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold482 SAMTools SNP 69604 69604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold482 SAMTools SNP 69751 69751 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C13%2C9%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.2%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold482 SAMTools SNP 69763 69763 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C23%2C32%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 70197 70197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C49%2C33%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.4%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 70642 70642 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.093%2C0.044%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold482 SAMTools SNP 70887 70887 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C55%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 70908 70908 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 71356 71356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C34%2C3%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 71380 71380 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C6%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.00026%2C1%2C7.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 71407 71407 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold482 SAMTools SNP 71876 71876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold482 SAMTools SNP 72065 72065 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C10%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold482 SAMTools SNP 73155 73155 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold482 SAMTools SNP 73737 73737 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.012%2C0.0003%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold482 SAMTools SNP 75033 75033 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold482 SAMTools SNP 75361 75361 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold482 SAMTools SNP 75370 75370 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold482 SAMTools SNP 75418 75418 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.44%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold482 SAMTools SNP 76443 76443 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.41%2C1%2C1%2C4.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold482 SAMTools SNP 76473 76473 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold482 SAMTools SNP 77405 77405 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C14%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 77468 77468 21.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold482 SAMTools SNP 77549 77549 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.12%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold482 SAMTools SNP 77834 77834 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C2%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.049%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold482 SAMTools SNP 77924 77924 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold482 SAMTools SNP 77963 77963 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold482 SAMTools SNP 78327 78327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold482 SAMTools SNP 78360 78360 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold482 SAMTools SNP 78471 78471 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold482 SAMTools SNP 78494 78494 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00089%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C226:34 scaffold482 SAMTools SNP 78618 78618 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C6.8e-82%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold482 SAMTools SNP 78700 78700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C39%2C25%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-05%2C2.6e-14%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 79280 79280 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C39%2C12%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 79607 79607 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C21%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00077%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 81311 81311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C63%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold482 SAMTools SNP 81627 81627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C29%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold482 SAMTools SNP 81657 81657 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold482 SAMTools SNP 82099 82099 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold482 SAMTools SNP 82120 82120 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C5%2C41%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.37%2C2.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold482 SAMTools SNP 82363 82363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C29%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 82893 82893 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C31%2C17%2C35%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.32%2C7e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold482 SAMTools SNP 83790 83790 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C48%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 85533 85533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C16%2C66%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 85626 85626 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C90%2C2%2C80%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.18%2C1.3e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold482 SAMTools SNP 86049 86049 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.58%2C3.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold482 SAMTools SNP 86061 86061 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.00037%2C0.075%2C1%2C9.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C252:62 scaffold482 SAMTools SNP 86067 86067 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C3%2C27%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.56%2C4e-14%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold482 SAMTools SNP 86605 86605 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C27%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.12%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold482 SAMTools SNP 86629 86629 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C20%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold482 SAMTools SNP 86686 86686 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C4%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold482 SAMTools SNP 87101 87101 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C0.0011%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C20:23 scaffold482 SAMTools SNP 87199 87199 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C27%2C0:51 scaffold482 SAMTools SNP 87304 87304 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold482 SAMTools SNP 87310 87310 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C64%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 87776 87776 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C26%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 87777 87777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C35%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 88238 88238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C32%2C11%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 88253 88253 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 88409 88409 26.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold482 SAMTools SNP 93739 93739 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold482 SAMTools SNP 93774 93774 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C3.8e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold482 SAMTools SNP 94208 94208 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C0%2C39%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold482 SAMTools SNP 95180 95180 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C74%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold482 SAMTools SNP 95225 95225 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold482 SAMTools SNP 95274 95274 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold482 SAMTools SNP 96073 96073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold482 SAMTools SNP 96130 96130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold482 SAMTools SNP 96139 96139 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold482 SAMTools SNP 138035 138035 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold482 SAMTools SNP 138074 138074 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.56%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold482 SAMTools SNP 138798 138798 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C72:43 scaffold482 SAMTools SNP 138801 138801 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold482 SAMTools SNP 139259 139259 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold482 SAMTools SNP 139302 139302 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold482 SAMTools SNP 179184 179184 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold482 SAMTools SNP 187443 187443 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold482 SAMTools SNP 189542 189542 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold482 SAMTools SNP 273341 273341 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold482 SAMTools SNP 276621 276621 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold482 SAMTools SNP 276867 276867 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C148:31 scaffold482 SAMTools SNP 277501 277501 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold483 SAMTools SNP 1482 1482 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold483 SAMTools SNP 13797 13797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold483 SAMTools SNP 13961 13961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold483 SAMTools SNP 14335 14335 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold483 SAMTools SNP 123799 123799 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold483 SAMTools SNP 134013 134013 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold483 SAMTools SNP 134057 134057 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold483 SAMTools SNP 134070 134070 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold483 SAMTools SNP 135131 135131 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C202:63 scaffold483 SAMTools SNP 135504 135504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold483 SAMTools SNP 136576 136576 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold483 SAMTools SNP 139658 139658 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold483 SAMTools SNP 139702 139702 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold483 SAMTools SNP 139703 139703 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold483 SAMTools SNP 141114 141114 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold483 SAMTools SNP 141119 141119 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold483 SAMTools SNP 141758 141758 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C0%2C70%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.34%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold483 SAMTools SNP 141784 141784 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C13%2C81%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C0.11%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold483 SAMTools SNP 141970 141970 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold483 SAMTools SNP 141979 141979 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold483 SAMTools SNP 142014 142014 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold483 SAMTools SNP 145053 145053 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold483 SAMTools SNP 145789 145789 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.49%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold483 SAMTools SNP 145807 145807 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C237:96 scaffold483 SAMTools SNP 146191 146191 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C0.035%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C243:31 scaffold483 SAMTools SNP 147855 147855 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold483 SAMTools SNP 147909 147909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold483 SAMTools SNP 148559 148559 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C211:99 scaffold483 SAMTools SNP 148561 148561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold483 SAMTools SNP 148591 148591 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C5%3BMQ%3D49%3BFQ%3D102%3BPV4%3D0.055%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold483 SAMTools SNP 148633 148633 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C2%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.67%2C3.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold483 SAMTools SNP 148696 148696 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold483 SAMTools SNP 149140 149140 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C17%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold483 SAMTools SNP 150843 150843 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold483 SAMTools SNP 150876 150876 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C30:33 scaffold483 SAMTools SNP 152706 152706 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C27%2C0:43 scaffold483 SAMTools SNP 152848 152848 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.53%2C7.1e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold483 SAMTools SNP 152902 152902 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C9.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold483 SAMTools SNP 152935 152935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold483 SAMTools SNP 153056 153056 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold483 SAMTools SNP 153582 153582 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.28%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold483 SAMTools SNP 153756 153756 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C10%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0093%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold483 SAMTools SNP 154335 154335 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold483 SAMTools SNP 154866 154866 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold483 SAMTools SNP 155462 155462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C7%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold483 SAMTools SNP 174494 174494 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold484 SAMTools SNP 26478 26478 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold484 SAMTools SNP 37615 37615 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold484 SAMTools SNP 37636 37636 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold484 SAMTools SNP 58272 58272 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold484 SAMTools SNP 67166 67166 105 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C0.043%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold484 SAMTools SNP 67172 67172 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.023%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold484 SAMTools SNP 67227 67227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold484 SAMTools SNP 69633 69633 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold484 SAMTools SNP 70849 70849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold484 SAMTools SNP 70888 70888 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C58%2C15%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold484 SAMTools SNP 72065 72065 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C43%2C0%2C33%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0016%2C3.4e-16%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold484 SAMTools SNP 95356 95356 40.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold484 SAMTools SNP 96470 96470 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.29%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C66:40 scaffold484 SAMTools SNP 100451 100451 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C3.1e-18%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C239:99 scaffold484 SAMTools SNP 102011 102011 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold484 SAMTools SNP 102037 102037 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.45%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold484 SAMTools SNP 102772 102772 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold484 SAMTools SNP 103485 103485 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.002%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C200:99 scaffold484 SAMTools SNP 103521 103521 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold484 SAMTools SNP 103523 103523 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold484 SAMTools SNP 104567 104567 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.061%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C128:46 scaffold484 SAMTools SNP 104894 104894 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold485 SAMTools SNP 278 278 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 1618 1618 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold485 SAMTools SNP 1630 1630 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold485 SAMTools SNP 1648 1648 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold485 SAMTools SNP 1666 1666 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0064%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold485 SAMTools SNP 1705 1705 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold485 SAMTools SNP 1711 1711 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold485 SAMTools SNP 2499 2499 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold485 SAMTools SNP 2528 2528 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C30%2C0:57 scaffold485 SAMTools SNP 3042 3042 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.63%2C0.14%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold485 SAMTools SNP 3368 3368 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold485 SAMTools SNP 3400 3400 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold485 SAMTools SNP 4505 4505 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold485 SAMTools SNP 4532 4532 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 4732 4732 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 4798 4798 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D74.4%3BPV4%3D1%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C110:99 scaffold485 SAMTools SNP 5588 5588 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C218:82 scaffold485 SAMTools SNP 5594 5594 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold485 SAMTools SNP 5651 5651 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold485 SAMTools SNP 7194 7194 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C17%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C144:99 scaffold485 SAMTools SNP 7212 7212 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold485 SAMTools SNP 7949 7949 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 7955 7955 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold485 SAMTools SNP 8518 8518 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold485 SAMTools SNP 8533 8533 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold485 SAMTools SNP 8608 8608 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold485 SAMTools SNP 8680 8680 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C254:99 scaffold485 SAMTools SNP 8704 8704 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold485 SAMTools SNP 9537 9537 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold485 SAMTools SNP 33303 33303 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 38018 38018 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 40837 40837 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 43296 43296 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold485 SAMTools SNP 44586 44586 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 44607 44607 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 46647 46647 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold485 SAMTools SNP 46772 46772 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold485 SAMTools SNP 48637 48637 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C117%2C0:99 scaffold485 SAMTools SNP 50125 50125 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold485 SAMTools SNP 51322 51322 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 52716 52716 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C24%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 53071 53071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C28%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 53203 53203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 53639 53639 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C12%2C2%2C16%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1.6e-09%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold485 SAMTools SNP 53660 53660 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C15%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold485 SAMTools SNP 54480 54480 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C65%2C13%2C6%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00012%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold485 SAMTools SNP 54570 54570 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C2%2C28%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.49%2C1.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C249:99 scaffold485 SAMTools SNP 54977 54977 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C34%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold485 SAMTools SNP 55529 55529 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 56230 56230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 56317 56317 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C41%2C17%3BMQ%3D50%3BFQ%3D169%3BPV4%3D2e-09%2C1.4e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold485 SAMTools SNP 56335 56335 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C43%2C3%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C8.3e-48%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 56377 56377 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C56%3BMQ%3D50%3BFQ%3D-196%3BPV4%3D1%2C4.8e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C169%2C0:99 scaffold485 SAMTools SNP 57259 57259 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold485 SAMTools SNP 57279 57279 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 58382 58382 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.19%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold485 SAMTools SNP 61677 61677 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C11%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold485 SAMTools SNP 62087 62087 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold485 SAMTools SNP 65145 65145 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold485 SAMTools SNP 76549 76549 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C51%2C0:99 scaffold485 SAMTools SNP 84258 84258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 84260 84260 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 88545 88545 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C237:99 scaffold485 SAMTools SNP 88559 88559 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.27%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold485 SAMTools SNP 88560 88560 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.089%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold485 SAMTools SNP 89262 89262 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C9.5e-31%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 89663 89663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 89792 89792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold485 SAMTools SNP 90074 90074 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold485 SAMTools SNP 90688 90688 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C10%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 90781 90781 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C28%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 92112 92112 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold485 SAMTools SNP 92248 92248 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold485 SAMTools SNP 92339 92339 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold485 SAMTools SNP 92410 92410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C19%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold485 SAMTools SNP 92625 92625 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 92718 92718 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C90%2C0:99 scaffold485 SAMTools SNP 92949 92949 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C51%2C0:98 scaffold485 SAMTools SNP 92998 92998 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C57%2C0:99 scaffold485 SAMTools SNP 93021 93021 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold485 SAMTools SNP 93231 93231 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold485 SAMTools SNP 93410 93410 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold485 SAMTools SNP 93428 93428 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 93561 93561 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.27%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 93600 93600 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C1%2C38%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold485 SAMTools SNP 94605 94605 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold485 SAMTools SNP 94667 94667 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C0%2C70%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D4.6e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C19%2C0:35 scaffold485 SAMTools SNP 94700 94700 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold485 SAMTools SNP 94894 94894 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold485 SAMTools SNP 94896 94896 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold485 SAMTools SNP 95529 95529 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.26%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold485 SAMTools SNP 96853 96853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 97851 97851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C29%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.45%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 97980 97980 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold485 SAMTools SNP 98046 98046 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D99.4%3BPV4%3D1%2C0.037%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C135:99 scaffold485 SAMTools SNP 108269 108269 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.14%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold485 SAMTools SNP 109188 109188 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold485 SAMTools SNP 109972 109972 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold485 SAMTools SNP 110004 110004 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C60:63 scaffold485 SAMTools SNP 110279 110279 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 110369 110369 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold485 SAMTools SNP 111222 111222 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.42%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 111236 111236 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 111264 111264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 111302 111302 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 112611 112611 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold485 SAMTools SNP 112659 112659 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold485 SAMTools SNP 112830 112830 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold485 SAMTools SNP 112874 112874 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.014%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold485 SAMTools SNP 113811 113811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold485 SAMTools SNP 114392 114392 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D41.5%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C71:71 scaffold485 SAMTools SNP 114817 114817 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 115996 115996 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold485 SAMTools SNP 116181 116181 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.02%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold485 SAMTools SNP 116199 116199 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold485 SAMTools SNP 116504 116504 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold485 SAMTools SNP 117061 117061 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.13%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold485 SAMTools SNP 117530 117530 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 117533 117533 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 117904 117904 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 117940 117940 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 118801 118801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 119129 119129 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 127097 127097 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold485 SAMTools SNP 129646 129646 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.00047%2C1.2e-05%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold485 SAMTools SNP 130614 130614 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C87%2C0:99 scaffold485 SAMTools SNP 130791 130791 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold485 SAMTools SNP 130860 130860 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C38%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C187%2C0:99 scaffold485 SAMTools SNP 130885 130885 45.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold485 SAMTools SNP 131127 131127 13.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold485 SAMTools SNP 133643 133643 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C90%2C0:99 scaffold485 SAMTools SNP 133810 133810 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold485 SAMTools SNP 135628 135628 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C45%2C0:87 scaffold485 SAMTools SNP 135755 135755 19 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold485 SAMTools SNP 149725 149725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C13%2C154%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.2e-72%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 155734 155734 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold485 SAMTools SNP 179567 179567 78.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold485 SAMTools SNP 179673 179673 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold485 SAMTools SNP 184566 184566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C22%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 184591 184591 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C37%2C9%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 185196 185196 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 185223 185223 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 188681 188681 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C45%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D7.5e-11%2C3.2e-09%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold485 SAMTools SNP 188685 188685 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C18%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00027%2C6.6e-05%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold485 SAMTools SNP 188692 188692 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0016%2C6.4e-10%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold485 SAMTools SNP 192147 192147 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C10%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 193784 193784 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.2%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold485 SAMTools SNP 193806 193806 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C36%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold485 SAMTools SNP 193919 193919 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C29%2C10%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.0056%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold485 SAMTools SNP 194004 194004 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 194464 194464 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C25%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold485 SAMTools SNP 194931 194931 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 194952 194952 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 195027 195027 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold485 SAMTools SNP 195351 195351 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C4%2C78%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C6.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 195402 195402 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 195783 195783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold485 SAMTools SNP 195834 195834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold485 SAMTools SNP 195950 195950 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold485 SAMTools SNP 196596 196596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C61%2C5%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 197112 197112 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C20%2C11%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.014%2C5e-36%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold485 SAMTools SNP 197274 197274 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C39%2C0:75 scaffold485 SAMTools SNP 197668 197668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 197793 197793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold485 SAMTools SNP 198262 198262 23.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold485 SAMTools SNP 198428 198428 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C14%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.2%2C6.5e-22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold485 SAMTools SNP 199564 199564 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 200670 200670 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C52%2C140%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 201234 201234 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C5%2C38%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.12%2C9.4e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold485 SAMTools SNP 205166 205166 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold485 SAMTools SNP 206079 206079 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 206141 206141 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold485 SAMTools SNP 206169 206169 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C108:88 scaffold485 SAMTools SNP 206992 206992 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold485 SAMTools SNP 207005 207005 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold485 SAMTools SNP 207500 207500 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold485 SAMTools SNP 207531 207531 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0121%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.028%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C188:33 scaffold485 SAMTools SNP 209141 209141 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0054%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 210185 210185 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.41%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold485 SAMTools SNP 210188 210188 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold485 SAMTools SNP 210203 210203 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold485 SAMTools SNP 210537 210537 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold485 SAMTools SNP 210589 210589 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold485 SAMTools SNP 210786 210786 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold485 SAMTools SNP 211845 211845 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold485 SAMTools SNP 212526 212526 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold485 SAMTools SNP 215074 215074 31.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold485 SAMTools SNP 219625 219625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 220712 220712 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C15%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.47%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold485 SAMTools SNP 221020 221020 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold485 SAMTools SNP 224643 224643 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold485 SAMTools SNP 226023 226023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 226041 226041 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.63%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold485 SAMTools SNP 227454 227454 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold485 SAMTools SNP 228820 228820 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold485 SAMTools SNP 228826 228826 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 229237 229237 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold485 SAMTools SNP 231668 231668 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 231922 231922 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold485 SAMTools SNP 231924 231924 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold485 SAMTools SNP 233036 233036 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold485 SAMTools SNP 233105 233105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 233137 233137 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 233295 233295 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 233421 233421 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold485 SAMTools SNP 233433 233433 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold485 SAMTools SNP 235423 235423 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C21%2C0:39 scaffold485 SAMTools SNP 235504 235504 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C24%2C0:45 scaffold485 SAMTools SNP 236603 236603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold485 SAMTools SNP 236834 236834 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold485 SAMTools SNP 236873 236873 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C0.38%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold485 SAMTools SNP 237523 237523 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C0.49%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold485 SAMTools SNP 238054 238054 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 238251 238251 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 238509 238509 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold485 SAMTools SNP 238560 238560 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C6%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.045%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold485 SAMTools SNP 238569 238569 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C31%2C8%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.012%2C0.085%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold485 SAMTools SNP 239033 239033 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.19%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold485 SAMTools SNP 239342 239342 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C18%2C30%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 239396 239396 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold485 SAMTools SNP 239582 239582 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C8%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.23%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 242391 242391 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold485 SAMTools SNP 242401 242401 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold485 SAMTools SNP 247192 247192 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold485 SAMTools SNP 247231 247231 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 264044 264044 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C0.00017%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold485 SAMTools SNP 264176 264176 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C0.00096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold485 SAMTools SNP 264585 264585 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C52:55 scaffold485 SAMTools SNP 264667 264667 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold485 SAMTools SNP 264923 264923 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C27%2C0:51 scaffold485 SAMTools SNP 285398 285398 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 285452 285452 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 285562 285562 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 289045 289045 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C241:99 scaffold485 SAMTools SNP 289084 289084 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold485 SAMTools SNP 289086 289086 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold485 SAMTools SNP 289754 289754 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C8.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold485 SAMTools SNP 290517 290517 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C36%2C0:69 scaffold485 SAMTools SNP 306940 306940 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.24%2C7.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold485 SAMTools SNP 307537 307537 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C148:99 scaffold485 SAMTools SNP 309476 309476 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold485 SAMTools SNP 310137 310137 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 325375 325375 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 325429 325429 206 . . REF=G;ALT=C,A,T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D28%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C126%2C0%2C163%2C9%2C154%2C226%2C97%2C144%2C223:99 scaffold485 SAMTools SNP 327406 327406 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D4%2C1%2C49%2C4%3BMQ%3D33%3BFQ%3D-4.12%3BPV4%3D0.37%2C1%2C0.0033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C25:28 scaffold485 SAMTools SNP 328997 328997 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D334%2C2%2C331%2C35%3BMQ%3D21%3BFQ%3D165%3BPV4%3D1.7e-08%2C0.15%2C0.052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C253:99 scaffold485 SAMTools SNP 329035 329035 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 329059 329059 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 330400 330400 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C24%2C0:45 scaffold485 SAMTools SNP 331012 331012 41.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold485 SAMTools SNP 334851 334851 80.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C15%2C0:27 scaffold485 SAMTools SNP 335909 335909 21.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C24%2C0:40 scaffold485 SAMTools SNP 336148 336148 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold485 SAMTools SNP 336203 336203 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold485 SAMTools SNP 341693 341693 4.16 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C21%2C0:20 scaffold485 SAMTools SNP 346947 346947 5.29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold485 SAMTools SNP 347522 347522 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C40%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C148%2C0:99 scaffold485 SAMTools SNP 347758 347758 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold485 SAMTools SNP 350937 350937 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C28%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.36%2C0.0033%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold485 SAMTools SNP 353019 353019 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C2%3BMQ%3D48%3BFQ%3D89%3BPV4%3D1%2C4e-10%2C0.28%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C116:99 scaffold485 SAMTools SNP 353042 353042 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold485 SAMTools SNP 354066 354066 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold485 SAMTools SNP 354072 354072 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold485 SAMTools SNP 357646 357646 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold485 SAMTools SNP 359893 359893 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold485 SAMTools SNP 359901 359901 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.029%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C118:49 scaffold485 SAMTools SNP 363054 363054 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold485 SAMTools SNP 364246 364246 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C229%2C0:99 scaffold485 SAMTools SNP 368731 368731 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 368749 368749 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 374711 374711 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 375435 375435 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 375473 375473 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold485 SAMTools SNP 375927 375927 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C36%2C0:69 scaffold485 SAMTools SNP 381842 381842 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C48%2C0:76 scaffold485 SAMTools SNP 384118 384118 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold485 SAMTools SNP 385847 385847 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 388431 388431 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold485 SAMTools SNP 388436 388436 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.066%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold485 SAMTools SNP 405897 405897 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 406133 406133 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold485 SAMTools SNP 419810 419810 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold485 SAMTools SNP 432113 432113 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold485 SAMTools SNP 435369 435369 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold485 SAMTools SNP 435472 435472 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 438662 438662 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold485 SAMTools SNP 442548 442548 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold485 SAMTools SNP 447543 447543 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold485 SAMTools SNP 449125 449125 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold485 SAMTools SNP 450789 450789 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 452829 452829 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold485 SAMTools SNP 453151 453151 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C217:99 scaffold485 SAMTools SNP 453663 453663 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold485 SAMTools SNP 467591 467591 3.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold485 SAMTools SNP 467944 467944 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C21%2C0:39 scaffold485 SAMTools SNP 468289 468289 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0062%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold485 SAMTools SNP 468359 468359 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold485 SAMTools SNP 469973 469973 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.047%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold485 SAMTools SNP 472181 472181 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold485 SAMTools SNP 472193 472193 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.58%2C0.014%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold485 SAMTools SNP 478267 478267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C243%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 478321 478321 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold485 SAMTools SNP 478871 478871 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C9%2C9%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.12%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold485 SAMTools SNP 478891 478891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 479018 479018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C26%2C19%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold485 SAMTools SNP 479072 479072 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C21%2C5%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.5%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold485 SAMTools SNP 479303 479303 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C8%2C4%3BMQ%3D50%3BFQ%3D212%3BPV4%3D7.8e-07%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold485 SAMTools SNP 479333 479333 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C0%2C18%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1.1e-06%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold485 SAMTools SNP 479811 479811 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C72%2C77%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-13%2C0.42%2C1%2C4.1e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 480222 480222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C44%2C106%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1.8e-11%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 480327 480327 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C85%2C41%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 480721 480721 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 481026 481026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C29%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold485 SAMTools SNP 481057 481057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 481109 481109 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold485 SAMTools SNP 481319 481319 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.34%2C0.48%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold485 SAMTools SNP 481335 481335 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00072%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold485 SAMTools SNP 481557 481557 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C59%2C16%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D7.5e-13%2C1.1e-13%2C1%2C3.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold485 SAMTools SNP 481563 481563 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C24%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C112:99 scaffold485 SAMTools SNP 481632 481632 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C98%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 481692 481692 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C40%2C0%2C8%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D0.023%2C0.34%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold485 SAMTools SNP 482011 482011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C25%2C43%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.43%2C0.23%2C0.11%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 482092 482092 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C24:27 scaffold485 SAMTools SNP 482209 482209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C0%2C116%3BMQ%3D50%3BFQ%3D-204%3BPV4%3D0.033%2C0.33%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C177%2C0:99 scaffold485 SAMTools SNP 482227 482227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 484163 484163 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold485 SAMTools SNP 484183 484183 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 486167 486167 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C243:99 scaffold485 SAMTools SNP 486212 486212 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold485 SAMTools SNP 486224 486224 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold485 SAMTools SNP 489741 489741 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.29%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold485 SAMTools SNP 489759 489759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold485 SAMTools SNP 489803 489803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold485 SAMTools SNP 490262 490262 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 495532 495532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold485 SAMTools SNP 495571 495571 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold485 SAMTools SNP 495601 495601 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold485 SAMTools SNP 496013 496013 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold485 SAMTools SNP 496130 496130 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold485 SAMTools SNP 497296 497296 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold485 SAMTools SNP 497353 497353 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 497371 497371 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold485 SAMTools SNP 497975 497975 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C32:35 scaffold485 SAMTools SNP 498032 498032 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold485 SAMTools SNP 498580 498580 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C41:44 scaffold485 SAMTools SNP 498586 498586 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 498616 498616 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold485 SAMTools SNP 498686 498686 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C141:36 scaffold485 SAMTools SNP 499232 499232 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold485 SAMTools SNP 499241 499241 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C36%2C0:69 scaffold485 SAMTools SNP 500780 500780 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold485 SAMTools SNP 500801 500801 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold485 SAMTools SNP 500822 500822 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold485 SAMTools SNP 503298 503298 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 503358 503358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold485 SAMTools SNP 505303 505303 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold485 SAMTools SNP 505356 505356 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.056%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold485 SAMTools SNP 505380 505380 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.0028%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C199:99 scaffold485 SAMTools SNP 505422 505422 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 506587 506587 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C14%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 509479 509479 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D42%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C109:74 scaffold485 SAMTools SNP 509488 509488 32.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold485 SAMTools SNP 514335 514335 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.33%2C5e-22%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold485 SAMTools SNP 514449 514449 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.44%2C6.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold485 SAMTools SNP 515643 515643 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold485 SAMTools SNP 518484 518484 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold485 SAMTools SNP 518562 518562 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C242%2C191:79 scaffold485 SAMTools SNP 521104 521104 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.078%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold485 SAMTools SNP 522349 522349 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.44%2C3.7e-12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C132:48 scaffold485 SAMTools SNP 524804 524804 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C6.1e-09%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold485 SAMTools SNP 524846 524846 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 525227 525227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 525521 525521 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C112:34 scaffold485 SAMTools SNP 525938 525938 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C13%2C7%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.73%2C1.6e-24%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold485 SAMTools SNP 527835 527835 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C251:99 scaffold485 SAMTools SNP 527883 527883 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C10%2C20%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.027%2C3.1e-12%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold485 SAMTools SNP 528692 528692 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 529001 529001 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.9e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C236:54 scaffold485 SAMTools SNP 529527 529527 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C33%2C0:63 scaffold485 SAMTools SNP 531302 531302 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C13%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold485 SAMTools SNP 531906 531906 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.44%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold485 SAMTools SNP 535129 535129 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0.03%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold485 SAMTools SNP 536192 536192 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold485 SAMTools SNP 536357 536357 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold485 SAMTools SNP 536405 536405 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold485 SAMTools SNP 536667 536667 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C26%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.45%2C9.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold485 SAMTools SNP 551348 551348 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold485 SAMTools SNP 551850 551850 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.7%3BPV4%3D1%2C0.019%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C49:42 scaffold485 SAMTools SNP 551851 551851 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.74%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C49:28 scaffold485 SAMTools SNP 555460 555460 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold485 SAMTools SNP 555541 555541 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold485 SAMTools SNP 555760 555760 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold485 SAMTools SNP 555781 555781 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold485 SAMTools SNP 568625 568625 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold485 SAMTools SNP 571070 571070 92.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold485 SAMTools SNP 571863 571863 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 573391 573391 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold485 SAMTools SNP 573397 573397 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 573400 573400 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 579561 579561 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C10%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.037%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold485 SAMTools SNP 583407 583407 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C17%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.77%2C5.8e-40%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold485 SAMTools SNP 583429 583429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C12%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1e-07%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 583498 583498 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C28%2C33%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 583555 583555 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold485 SAMTools SNP 588043 588043 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.13%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold485 SAMTools SNP 591889 591889 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 594163 594163 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 595204 595204 76.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C12%2C0:21 scaffold485 SAMTools SNP 595646 595646 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold485 SAMTools SNP 598753 598753 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.5%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold485 SAMTools SNP 598780 598780 136 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold485 SAMTools SNP 598816 598816 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold485 SAMTools SNP 602941 602941 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 602959 602959 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 603175 603175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 603208 603208 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 603772 603772 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold485 SAMTools SNP 603790 603790 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold485 SAMTools SNP 603803 603803 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold485 SAMTools SNP 603812 603812 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold485 SAMTools SNP 606435 606435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.051%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 606443 606443 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.041%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 608905 608905 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D8.4e-05%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold485 SAMTools SNP 608962 608962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold485 SAMTools SNP 623167 623167 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C55%2C0:99 scaffold485 SAMTools SNP 623746 623746 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C9%2C35%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.023%2C7.2e-68%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold485 SAMTools SNP 624455 624455 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C75%2C0:99 scaffold485 SAMTools SNP 624586 624586 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold485 SAMTools SNP 630359 630359 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.13%2C2.2e-06%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold485 SAMTools SNP 630408 630408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold485 SAMTools SNP 632402 632402 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold485 SAMTools SNP 633372 633372 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C54%2C0:99 scaffold485 SAMTools SNP 633413 633413 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.00047%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C184:77 scaffold485 SAMTools SNP 639443 639443 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold485 SAMTools SNP 645242 645242 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold485 SAMTools SNP 647508 647508 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold485 SAMTools SNP 647684 647684 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.033%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C123:49 scaffold485 SAMTools SNP 647944 647944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold485 SAMTools SNP 648275 648275 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold485 SAMTools SNP 648794 648794 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold485 SAMTools SNP 649070 649070 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold485 SAMTools SNP 651281 651281 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold485 SAMTools SNP 651730 651730 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C191:99 scaffold485 SAMTools SNP 651821 651821 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold485 SAMTools SNP 651858 651858 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C2%3BMQ%3D47%3BFQ%3D46%3BPV4%3D1%2C0.2%2C0.31%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C73:76 scaffold485 SAMTools SNP 652925 652925 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold485 SAMTools SNP 652994 652994 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D48%3BFQ%3D37%3BPV4%3D1%2C0.14%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold485 SAMTools SNP 653733 653733 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.34%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C221:99 scaffold485 SAMTools SNP 653761 653761 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold485 SAMTools SNP 653846 653846 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.59%2C6.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C213:70 scaffold485 SAMTools SNP 654264 654264 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C111%2C0:99 scaffold485 SAMTools SNP 654465 654465 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.64%2C1.6e-13%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold485 SAMTools SNP 654496 654496 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.00088%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold485 SAMTools SNP 654616 654616 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.022%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C80:37 scaffold485 SAMTools SNP 655823 655823 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 655844 655844 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 655928 655928 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold485 SAMTools SNP 655988 655988 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C76:79 scaffold485 SAMTools SNP 657892 657892 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.46%2C0.067%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C205:40 scaffold485 SAMTools SNP 657978 657978 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold485 SAMTools SNP 662651 662651 14.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold485 SAMTools SNP 663541 663541 10.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold485 SAMTools SNP 664446 664446 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1.5e-14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold485 SAMTools SNP 664478 664478 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.17%2C4.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C193:55 scaffold485 SAMTools SNP 665654 665654 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C16%2C11%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.048%2C3.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold485 SAMTools SNP 672513 672513 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C36%2C0:69 scaffold485 SAMTools SNP 677138 677138 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold485 SAMTools SNP 677733 677733 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold485 SAMTools SNP 679352 679352 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.053%2C0.001%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold485 SAMTools SNP 681402 681402 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold485 SAMTools SNP 705193 705193 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold485 SAMTools SNP 727218 727218 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 749529 749529 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold485 SAMTools SNP 749606 749606 127 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold485 SAMTools SNP 750864 750864 32.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold485 SAMTools SNP 751038 751038 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold485 SAMTools SNP 751241 751241 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold485 SAMTools SNP 764703 764703 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1.1e-17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C221:95 scaffold485 SAMTools SNP 772397 772397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 772421 772421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 772556 772556 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.27%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold485 SAMTools SNP 772763 772763 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold485 SAMTools SNP 774053 774053 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold485 SAMTools SNP 785664 785664 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold485 SAMTools SNP 808071 808071 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold485 SAMTools SNP 846026 846026 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold485 SAMTools SNP 847610 847610 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 847849 847849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold485 SAMTools SNP 848009 848009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C11%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.029%2C0.19%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold485 SAMTools SNP 848391 848391 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.29%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold485 SAMTools SNP 848638 848638 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.001%2C8.6e-06%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C152:99 scaffold485 SAMTools SNP 848639 848639 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.26%2C0.037%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold485 SAMTools SNP 854552 854552 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C238%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold485 SAMTools SNP 883288 883288 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold485 SAMTools SNP 885695 885695 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold485 SAMTools SNP 886466 886466 34.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold485 SAMTools SNP 886535 886535 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold485 SAMTools SNP 889524 889524 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold485 SAMTools SNP 892708 892708 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold487 SAMTools SNP 7448 7448 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold487 SAMTools SNP 7503 7503 32.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold487 SAMTools SNP 52843 52843 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold487 SAMTools SNP 52919 52919 151 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C71%2C190%2C0%2C184:29 scaffold487 SAMTools SNP 52996 52996 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C63%2C0:99 scaffold487 SAMTools SNP 53049 53049 36.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold487 SAMTools SNP 95758 95758 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold487 SAMTools SNP 107786 107786 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0031%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold487 SAMTools SNP 108621 108621 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold487 SAMTools SNP 111769 111769 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C16%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold487 SAMTools SNP 111814 111814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold487 SAMTools SNP 111841 111841 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C223:41 scaffold487 SAMTools SNP 111862 111862 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold487 SAMTools SNP 111871 111871 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C28%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.027%2C0.24%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C155:99 scaffold487 SAMTools SNP 112381 112381 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold487 SAMTools SNP 112393 112393 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.31%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold487 SAMTools SNP 112456 112456 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold487 SAMTools SNP 118598 118598 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold487 SAMTools SNP 119758 119758 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C170:99 scaffold487 SAMTools SNP 119761 119761 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold487 SAMTools SNP 119851 119851 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold487 SAMTools SNP 125802 125802 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C7%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.32%2C0.091%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold487 SAMTools SNP 125893 125893 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold487 SAMTools SNP 127924 127924 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold487 SAMTools SNP 129401 129401 103 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C119%2C230%2C0%2C218:57 scaffold487 SAMTools SNP 129446 129446 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold487 SAMTools SNP 130415 130415 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.00067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 130526 130526 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 134144 134144 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 136634 136634 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.55%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold487 SAMTools SNP 136639 136639 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold487 SAMTools SNP 136666 136666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold487 SAMTools SNP 138095 138095 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 138110 138110 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold487 SAMTools SNP 138119 138119 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold487 SAMTools SNP 139146 139146 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C50%2C8%2C41%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.016%2C1.4e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold487 SAMTools SNP 139551 139551 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold487 SAMTools SNP 139554 139554 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold487 SAMTools SNP 139807 139807 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold487 SAMTools SNP 139822 139822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1.8e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 139891 139891 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C229:99 scaffold487 SAMTools SNP 139892 139892 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C235:99 scaffold487 SAMTools SNP 141907 141907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 142078 142078 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C36%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.29%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold487 SAMTools SNP 142141 142141 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C36%2C18%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 142512 142512 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C24%2C26%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 143222 143222 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C32%2C29%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.32%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 143273 143273 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C39%2C25%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.43%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 145304 145304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C26%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold487 SAMTools SNP 145645 145645 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C57%2C0:99 scaffold487 SAMTools SNP 145735 145735 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D26.9%3BPV4%3D1%2C9.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C69:57 scaffold487 SAMTools SNP 146039 146039 85.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C21%2C0:39 scaffold487 SAMTools SNP 146368 146368 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold487 SAMTools SNP 152801 152801 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C244:99 scaffold487 SAMTools SNP 152817 152817 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold487 SAMTools SNP 152823 152823 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.00011%2C0.061%2C1%2C7.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold487 SAMTools SNP 159302 159302 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold487 SAMTools SNP 160307 160307 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold487 SAMTools SNP 160310 160310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold487 SAMTools SNP 163719 163719 17.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold487 SAMTools SNP 164680 164680 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C46%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.089%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold487 SAMTools SNP 164726 164726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold487 SAMTools SNP 164762 164762 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 164783 164783 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C1%2C124%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.17%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 166549 166549 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold487 SAMTools SNP 166639 166639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C18%2C28%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 169273 169273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D714%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C706%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C0.48%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold487 SAMTools SNP 169563 169563 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C511%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold487 SAMTools SNP 171184 171184 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold487 SAMTools SNP 171200 171200 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 172167 172167 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D332%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold487 SAMTools SNP 176445 176445 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold487 SAMTools SNP 177377 177377 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C86%2C21%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 177440 177440 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C36%2C20%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 178571 178571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C21%2C141%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 179658 179658 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C124%2C86%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C4.1e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 179709 179709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C96%2C30%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 180132 180132 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C101%2C33%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 180192 180192 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C20%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 180831 180831 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold487 SAMTools SNP 180836 180836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C74%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 226933 226933 22.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold487 SAMTools SNP 228886 228886 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold487 SAMTools SNP 229793 229793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold487 SAMTools SNP 230569 230569 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C11%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.015%2C2.4e-11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold487 SAMTools SNP 239472 239472 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0241%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3.2e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C77:30 scaffold487 SAMTools SNP 239962 239962 82.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold487 SAMTools SNP 282571 282571 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold487 SAMTools SNP 282577 282577 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.23%2C0.25%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold487 SAMTools SNP 283322 283322 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C187:99 scaffold487 SAMTools SNP 283393 283393 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold487 SAMTools SNP 283792 283792 112 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C241:99 scaffold487 SAMTools SNP 283855 283855 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold487 SAMTools SNP 305087 305087 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold487 SAMTools SNP 326433 326433 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold487 SAMTools SNP 362319 362319 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold487 SAMTools SNP 362530 362530 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold487 SAMTools SNP 371761 371761 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold487 SAMTools SNP 373638 373638 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C231:55 scaffold487 SAMTools SNP 373779 373779 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C14%2C13%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.025%2C2.3e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold487 SAMTools SNP 373993 373993 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C17%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold487 SAMTools SNP 375096 375096 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C1%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold487 SAMTools SNP 384738 384738 7.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold487 SAMTools SNP 402732 402732 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 421988 421988 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 421989 421989 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 439279 439279 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C125:31 scaffold487 SAMTools SNP 444929 444929 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold487 SAMTools SNP 458746 458746 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold487 SAMTools SNP 458767 458767 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold487 SAMTools SNP 471014 471014 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C8%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0045%2C2.1e-08%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold487 SAMTools SNP 471024 471024 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C90%2C4%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold487 SAMTools SNP 481142 481142 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold487 SAMTools SNP 485660 485660 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold487 SAMTools SNP 488169 488169 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C38:41 scaffold488 SAMTools SNP 5400 5400 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold488 SAMTools SNP 5433 5433 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold488 SAMTools SNP 5535 5535 69.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C21%2C0:39 scaffold488 SAMTools SNP 12602 12602 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0094%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.47%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C153:30 scaffold488 SAMTools SNP 23129 23129 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C71%2C2%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D0.0022%2C3.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C131%2C0:99 scaffold488 SAMTools SNP 28090 28090 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold488 SAMTools SNP 28496 28496 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold488 SAMTools SNP 29696 29696 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold488 SAMTools SNP 30017 30017 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C6%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C0.009%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold488 SAMTools SNP 31014 31014 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C16%2C47%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.29%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold488 SAMTools SNP 31038 31038 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold488 SAMTools SNP 31752 31752 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C61%2C4%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold488 SAMTools SNP 31773 31773 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold488 SAMTools SNP 32366 32366 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C11%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.072%2C0.42%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold488 SAMTools SNP 96365 96365 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold488 SAMTools SNP 96392 96392 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold488 SAMTools SNP 96547 96547 90 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.044%2C0.014%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C232:99 scaffold488 SAMTools SNP 96638 96638 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.053%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold488 SAMTools SNP 97181 97181 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold488 SAMTools SNP 97803 97803 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold488 SAMTools SNP 97823 97823 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold488 SAMTools SNP 98353 98353 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold488 SAMTools SNP 99563 99563 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold488 SAMTools SNP 99591 99591 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold488 SAMTools SNP 99986 99986 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold488 SAMTools SNP 100028 100028 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold488 SAMTools SNP 100250 100250 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.58%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C243:99 scaffold488 SAMTools SNP 100295 100295 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold488 SAMTools SNP 100666 100666 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold488 SAMTools SNP 101170 101170 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold488 SAMTools SNP 101197 101197 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold488 SAMTools SNP 101748 101748 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold488 SAMTools SNP 101757 101757 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold488 SAMTools SNP 101802 101802 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold488 SAMTools SNP 102351 102351 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold488 SAMTools SNP 102949 102949 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C1%2C30%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold488 SAMTools SNP 102989 102989 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold488 SAMTools SNP 105187 105187 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C451%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold488 SAMTools SNP 105226 105226 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold488 SAMTools SNP 105274 105274 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4044%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C1%2C1566%2C273%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C5.9e-120%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C255%2C0:99 scaffold488 SAMTools SNP 106996 106996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3686%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C243%2C0%2C3443%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold488 SAMTools SNP 107563 107563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold488 SAMTools SNP 108562 108562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold488 SAMTools SNP 109030 109030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C55%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold488 SAMTools SNP 109313 109313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold488 SAMTools SNP 109316 109316 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold488 SAMTools SNP 109373 109373 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold488 SAMTools SNP 110998 110998 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C30%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold488 SAMTools SNP 111044 111044 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold488 SAMTools SNP 111621 111621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold488 SAMTools SNP 111646 111646 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold488 SAMTools SNP 111911 111911 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold488 SAMTools SNP 112080 112080 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold488 SAMTools SNP 112642 112642 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold488 SAMTools SNP 112651 112651 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold488 SAMTools SNP 113185 113185 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 123141 123141 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold489 SAMTools SNP 130396 130396 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 131279 131279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C31%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold489 SAMTools SNP 131319 131319 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold489 SAMTools SNP 131775 131775 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C7%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.31%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold489 SAMTools SNP 131790 131790 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold489 SAMTools SNP 132224 132224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.62%2C0.011%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold489 SAMTools SNP 132334 132334 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.48%2C6.3e-26%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold489 SAMTools SNP 132607 132607 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 132643 132643 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.14%2C5.4e-10%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold489 SAMTools SNP 133130 133130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 136768 136768 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold489 SAMTools SNP 137095 137095 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold489 SAMTools SNP 137145 137145 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold489 SAMTools SNP 137166 137166 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold489 SAMTools SNP 137763 137763 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold489 SAMTools SNP 139859 139859 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 139940 139940 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 140199 140199 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold489 SAMTools SNP 140267 140267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 140587 140587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold489 SAMTools SNP 140809 140809 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold489 SAMTools SNP 140890 140890 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold489 SAMTools SNP 142820 142820 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold489 SAMTools SNP 143410 143410 56.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold489 SAMTools SNP 143416 143416 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold489 SAMTools SNP 143473 143473 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.3%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold489 SAMTools SNP 146616 146616 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 146774 146774 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 146900 146900 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 147371 147371 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold489 SAMTools SNP 147399 147399 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold489 SAMTools SNP 147448 147448 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold489 SAMTools SNP 148249 148249 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold489 SAMTools SNP 149776 149776 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold489 SAMTools SNP 156313 156313 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold489 SAMTools SNP 156318 156318 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold489 SAMTools SNP 176454 176454 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold489 SAMTools SNP 176476 176476 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold489 SAMTools SNP 204136 204136 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.19%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold489 SAMTools SNP 204143 204143 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold489 SAMTools SNP 204622 204622 47.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold489 SAMTools SNP 204768 204768 34.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold489 SAMTools SNP 205116 205116 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C41:44 scaffold489 SAMTools SNP 205119 205119 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C75:43 scaffold489 SAMTools SNP 205365 205365 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.8e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C91:70 scaffold489 SAMTools SNP 205428 205428 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D13%3BPV4%3D0.1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C46:42 scaffold489 SAMTools SNP 206401 206401 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold489 SAMTools SNP 212712 212712 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold489 SAMTools SNP 212749 212749 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold489 SAMTools SNP 213831 213831 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 215004 215004 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C1%3BMQ%3D43%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C201:99 scaffold489 SAMTools SNP 215485 215485 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 215636 215636 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 216613 216613 28.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold489 SAMTools SNP 223014 223014 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold489 SAMTools SNP 223018 223018 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C174:69 scaffold489 SAMTools SNP 227056 227056 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D822%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C790%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.3%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold489 SAMTools SNP 227343 227343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D887%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C818%2C49%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold489 SAMTools SNP 228100 228100 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C188%2C150%2C256%3BMQ%3D50%3BFQ%3D203%3BPV4%3D8e-26%2C6.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold489 SAMTools SNP 229081 229081 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold489 SAMTools SNP 229112 229112 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 229113 229113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 240170 240170 54.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold489 SAMTools SNP 251732 251732 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold489 SAMTools SNP 255310 255310 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold489 SAMTools SNP 259283 259283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold489 SAMTools SNP 259602 259602 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold489 SAMTools SNP 260442 260442 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold489 SAMTools SNP 263671 263671 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold489 SAMTools SNP 263679 263679 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold489 SAMTools SNP 263986 263986 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C245:99 scaffold489 SAMTools SNP 264892 264892 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold489 SAMTools SNP 265174 265174 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold489 SAMTools SNP 265925 265925 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.023%2C1.5e-06%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold489 SAMTools SNP 265954 265954 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold489 SAMTools SNP 266129 266129 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.63%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold489 SAMTools SNP 268696 268696 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.018%2C0.0019%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C210:49 scaffold489 SAMTools SNP 270666 270666 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.36%2C0.0063%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold489 SAMTools SNP 279113 279113 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C129:37 scaffold489 SAMTools SNP 285585 285585 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold489 SAMTools SNP 285606 285606 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 286577 286577 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.66%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold489 SAMTools SNP 286582 286582 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold489 SAMTools SNP 289702 289702 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold489 SAMTools SNP 290340 290340 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 290361 290361 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 290633 290633 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 290957 290957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 291606 291606 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold489 SAMTools SNP 292414 292414 88 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C20%2C11%2C117%2C0%2C114:16 scaffold489 SAMTools SNP 292480 292480 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C162:99 scaffold489 SAMTools SNP 292489 292489 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C219:99 scaffold489 SAMTools SNP 293253 293253 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C178:99 scaffold489 SAMTools SNP 293277 293277 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold489 SAMTools SNP 293664 293664 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold489 SAMTools SNP 293684 293684 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 294032 294032 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.44%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold489 SAMTools SNP 294266 294266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold489 SAMTools SNP 294302 294302 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0096%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold489 SAMTools SNP 294549 294549 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold489 SAMTools SNP 294567 294567 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C234:69 scaffold489 SAMTools SNP 294666 294666 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold489 SAMTools SNP 294687 294687 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.13%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold489 SAMTools SNP 295834 295834 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold489 SAMTools SNP 296046 296046 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold489 SAMTools SNP 296079 296079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.18%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold489 SAMTools SNP 297533 297533 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.18%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold489 SAMTools SNP 297542 297542 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C51:54 scaffold489 SAMTools SNP 297554 297554 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C42%2C0:81 scaffold489 SAMTools SNP 297620 297620 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold489 SAMTools SNP 297866 297866 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 298242 298242 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold489 SAMTools SNP 299042 299042 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold489 SAMTools SNP 299062 299062 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold489 SAMTools SNP 299377 299377 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.0076%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold489 SAMTools SNP 299422 299422 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00016%2C0.45%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C182:99 scaffold489 SAMTools SNP 299440 299440 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C12%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D2e-05%2C4e-05%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C174:99 scaffold489 SAMTools SNP 299811 299811 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 299850 299850 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 300026 300026 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 300049 300049 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold489 SAMTools SNP 300304 300304 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold489 SAMTools SNP 300643 300643 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold489 SAMTools SNP 301027 301027 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.001%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C74:52 scaffold489 SAMTools SNP 301210 301210 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold489 SAMTools SNP 301638 301638 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C12%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold489 SAMTools SNP 301722 301722 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold489 SAMTools SNP 302130 302130 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold489 SAMTools SNP 302175 302175 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold489 SAMTools SNP 302191 302191 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold489 SAMTools SNP 302433 302433 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold489 SAMTools SNP 302510 302510 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.62%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold489 SAMTools SNP 302692 302692 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 302701 302701 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.19%2C0.29%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold489 SAMTools SNP 302941 302941 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 302947 302947 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 303026 303026 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold489 SAMTools SNP 303159 303159 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold489 SAMTools SNP 303198 303198 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold489 SAMTools SNP 303772 303772 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 303945 303945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C46%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold489 SAMTools SNP 303974 303974 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold489 SAMTools SNP 304031 304031 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 304064 304064 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold489 SAMTools SNP 304082 304082 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 304235 304235 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 304250 304250 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold489 SAMTools SNP 304421 304421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 304780 304780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 304816 304816 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold489 SAMTools SNP 304831 304831 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold489 SAMTools SNP 304852 304852 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C10%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C7.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold489 SAMTools SNP 304912 304912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C17%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold489 SAMTools SNP 305436 305436 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold489 SAMTools SNP 305442 305442 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold489 SAMTools SNP 305523 305523 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 305579 305579 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.00078%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold489 SAMTools SNP 306416 306416 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.2%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold489 SAMTools SNP 306479 306479 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C31%2C7%2C11%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.78%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold489 SAMTools SNP 308611 308611 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold489 SAMTools SNP 309158 309158 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C171:99 scaffold489 SAMTools SNP 309200 309200 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold489 SAMTools SNP 309641 309641 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 309647 309647 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold489 SAMTools SNP 310138 310138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold489 SAMTools SNP 310148 310148 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold489 SAMTools SNP 310926 310926 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold489 SAMTools SNP 312587 312587 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C8%2C38%2C2%3BMQ%3D48%3BFQ%3D137%3BPV4%3D0.31%2C2e-09%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold489 SAMTools SNP 313263 313263 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 314749 314749 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.8e-39%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C235:70 scaffold489 SAMTools SNP 319287 319287 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold489 SAMTools SNP 319461 319461 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 319556 319556 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold489 SAMTools SNP 321255 321255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold489 SAMTools SNP 321267 321267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold489 SAMTools SNP 321509 321509 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold489 SAMTools SNP 322481 322481 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold489 SAMTools SNP 322866 322866 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold489 SAMTools SNP 326679 326679 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C1%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.43%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold489 SAMTools SNP 327574 327574 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold489 SAMTools SNP 327625 327625 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold489 SAMTools SNP 327976 327976 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C27%2C0:51 scaffold489 SAMTools SNP 328195 328195 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C20%3BMQ%3D45%3BFQ%3D49%3BPV4%3D0.4%2C1.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C76:79 scaffold489 SAMTools SNP 329254 329254 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold489 SAMTools SNP 335562 335562 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C8%2C67%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 335870 335870 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D623%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D349%2C60%2C147%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 335942 335942 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1041%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D272%2C379%2C177%2C160%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 337294 337294 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D887%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D247%2C341%2C158%2C141%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C1%2C0.31%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 340726 340726 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold489 SAMTools SNP 343707 343707 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 344377 344377 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold489 SAMTools SNP 346051 346051 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 346646 346646 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold489 SAMTools SNP 347023 347023 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold489 SAMTools SNP 347192 347192 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C39%2C0:75 scaffold489 SAMTools SNP 347304 347304 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold489 SAMTools SNP 364002 364002 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 365821 365821 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold489 SAMTools SNP 365889 365889 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold489 SAMTools SNP 381089 381089 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C0.43%2C1%2C3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C70:73 scaffold489 SAMTools SNP 381499 381499 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold489 SAMTools SNP 381874 381874 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold489 SAMTools SNP 382365 382365 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold489 SAMTools SNP 382392 382392 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 382776 382776 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold489 SAMTools SNP 383009 383009 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 383940 383940 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold489 SAMTools SNP 384014 384014 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 391922 391922 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 391946 391946 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold489 SAMTools SNP 392698 392698 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C27%2C0:50 scaffold489 SAMTools SNP 405577 405577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold489 SAMTools SNP 405762 405762 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.24%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold489 SAMTools SNP 405877 405877 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.015%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C108:39 scaffold489 SAMTools SNP 427522 427522 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C77:30 scaffold489 SAMTools SNP 432742 432742 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 436037 436037 39.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold489 SAMTools SNP 436052 436052 40.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold489 SAMTools SNP 460129 460129 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C36%2C0:69 scaffold489 SAMTools SNP 460385 460385 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.19%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C213:36 scaffold489 SAMTools SNP 460448 460448 42.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold489 SAMTools SNP 460700 460700 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C3.9e-09%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C223:37 scaffold489 SAMTools SNP 461485 461485 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C84%2C0%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.38%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold489 SAMTools SNP 461527 461527 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.094%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C239:99 scaffold489 SAMTools SNP 530350 530350 5.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold489 SAMTools SNP 531853 531853 18.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold489 SAMTools SNP 537027 537027 20.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold489 SAMTools SNP 541500 541500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold489 SAMTools SNP 541511 541511 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold489 SAMTools SNP 541634 541634 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold489 SAMTools SNP 542159 542159 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C18:21 scaffold489 SAMTools SNP 542835 542835 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold489 SAMTools SNP 543727 543727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold489 SAMTools SNP 544305 544305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold489 SAMTools SNP 545301 545301 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold489 SAMTools SNP 545385 545385 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold489 SAMTools SNP 545397 545397 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold489 SAMTools SNP 545716 545716 85.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C15%2C0:27 scaffold489 SAMTools SNP 545733 545733 53.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold489 SAMTools SNP 546894 546894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold489 SAMTools SNP 546917 546917 204 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C51%2C0:99 scaffold489 SAMTools SNP 554724 554724 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 554727 554727 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 556128 556128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 557365 557365 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold489 SAMTools SNP 557410 557410 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 564055 564055 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 564059 564059 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 565776 565776 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold489 SAMTools SNP 576042 576042 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 576395 576395 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold489 SAMTools SNP 588519 588519 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold489 SAMTools SNP 625950 625950 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold489 SAMTools SNP 628322 628322 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold49 SAMTools SNP 38460 38460 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 38486 38486 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 43046 43046 57.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold49 SAMTools SNP 94404 94404 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C209%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold49 SAMTools SNP 94427 94427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold49 SAMTools SNP 94757 94757 17.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold49 SAMTools SNP 96821 96821 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold49 SAMTools SNP 96841 96841 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold49 SAMTools SNP 102278 102278 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold49 SAMTools SNP 102710 102710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2983%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C13%2C31%2C2872%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold49 SAMTools SNP 103862 103862 32.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold49 SAMTools SNP 104371 104371 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C63%2C0:99 scaffold49 SAMTools SNP 111345 111345 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 112231 112231 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C42%2C126%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold49 SAMTools SNP 124943 124943 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 125448 125448 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 125726 125726 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold49 SAMTools SNP 125737 125737 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 129700 129700 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C0%2C206%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C9.9e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold49 SAMTools SNP 130297 130297 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C54%2C64%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold49 SAMTools SNP 138101 138101 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2442%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D645%2C6%2C117%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D3.2e-05%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold49 SAMTools SNP 138116 138116 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2236%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D551%2C10%2C121%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D5.9e-05%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold49 SAMTools SNP 138369 138369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2362%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C630%2C13%2C1588%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.58%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold49 SAMTools SNP 138426 138426 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2222%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C591%2C5%2C1383%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold49 SAMTools SNP 138495 138495 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold49 SAMTools SNP 182388 182388 81.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold49 SAMTools SNP 182973 182973 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C78%2C0:99 scaffold49 SAMTools SNP 183903 183903 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.6e-09%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold49 SAMTools SNP 245841 245841 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold49 SAMTools SNP 248288 248288 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold49 SAMTools SNP 258628 258628 204 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.18%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C104:99 scaffold49 SAMTools SNP 258649 258649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold49 SAMTools SNP 259205 259205 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C253:99 scaffold49 SAMTools SNP 259223 259223 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.25%2C0.018%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C219:99 scaffold49 SAMTools SNP 259672 259672 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C19%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.2%2C0.27%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold49 SAMTools SNP 260855 260855 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold49 SAMTools SNP 264328 264328 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C35%2C0%3BMQ%3D45%3BFQ%3D27%3BPV4%3D1%2C0.15%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C54:57 scaffold49 SAMTools SNP 266056 266056 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold49 SAMTools SNP 271416 271416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1011%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D537%2C33%2C411%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold49 SAMTools SNP 271810 271810 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold49 SAMTools SNP 275238 275238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold49 SAMTools SNP 275481 275481 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D573%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C0%2C399%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C4.2e-154%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C214:99 scaffold49 SAMTools SNP 275597 275597 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C161%2C0%2C398%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C0.26%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C155:28 scaffold49 SAMTools SNP 277833 277833 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C100%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold49 SAMTools SNP 277838 277838 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C0%2C64%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C3.3e-37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold49 SAMTools SNP 282293 282293 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold49 SAMTools SNP 282496 282496 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.016%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold49 SAMTools SNP 282740 282740 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C51%2C3%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.059%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold49 SAMTools SNP 283934 283934 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold49 SAMTools SNP 285854 285854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold49 SAMTools SNP 289613 289613 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold49 SAMTools SNP 293415 293415 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0072%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold49 SAMTools SNP 294610 294610 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold49 SAMTools SNP 295614 295614 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.27%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C240:99 scaffold49 SAMTools SNP 295775 295775 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold49 SAMTools SNP 330021 330021 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold49 SAMTools SNP 338933 338933 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold49 SAMTools SNP 338952 338952 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold49 SAMTools SNP 346685 346685 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold49 SAMTools SNP 350583 350583 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold490 SAMTools SNP 27575 27575 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.38%2C0.0002%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C226:99 scaffold490 SAMTools SNP 27707 27707 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0045%2C2.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold490 SAMTools SNP 27988 27988 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold490 SAMTools SNP 28697 28697 116 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold490 SAMTools SNP 28721 28721 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold490 SAMTools SNP 28760 28760 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold490 SAMTools SNP 29045 29045 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold490 SAMTools SNP 29577 29577 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.019%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold490 SAMTools SNP 153896 153896 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold490 SAMTools SNP 154314 154314 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold490 SAMTools SNP 162662 162662 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold490 SAMTools SNP 209079 209079 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold490 SAMTools SNP 217977 217977 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold490 SAMTools SNP 218126 218126 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C17%2C9%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1.3e-13%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold490 SAMTools SNP 218210 218210 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C4%2C10%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.073%2C3.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold490 SAMTools SNP 223695 223695 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold491 SAMTools SNP 4177 4177 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 4222 4222 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 4325 4325 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 4329 4329 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 63364 63364 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold491 SAMTools SNP 63418 63418 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold491 SAMTools SNP 63500 63500 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C48%2C0:93 scaffold491 SAMTools SNP 63530 63530 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C60%2C0:99 scaffold491 SAMTools SNP 74340 74340 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 78601 78601 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold491 SAMTools SNP 78747 78747 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold491 SAMTools SNP 78785 78785 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold491 SAMTools SNP 80771 80771 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold491 SAMTools SNP 80983 80983 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold491 SAMTools SNP 80996 80996 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold491 SAMTools SNP 82483 82483 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 83939 83939 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 84379 84379 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold491 SAMTools SNP 84457 84457 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold491 SAMTools SNP 84466 84466 186 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C47%2C29%2C209%2C0%2C206:33 scaffold491 SAMTools SNP 84969 84969 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.54%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold491 SAMTools SNP 85697 85697 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold491 SAMTools SNP 86578 86578 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold491 SAMTools SNP 86591 86591 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold491 SAMTools SNP 87276 87276 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C34%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold491 SAMTools SNP 87301 87301 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C36%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold491 SAMTools SNP 88718 88718 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C21%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold491 SAMTools SNP 88736 88736 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold491 SAMTools SNP 88775 88775 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold491 SAMTools SNP 90416 90416 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold491 SAMTools SNP 104378 104378 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold492 SAMTools SNP 5598 5598 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 39465 39465 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.007%2C1.6e-05%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold492 SAMTools SNP 50698 50698 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold492 SAMTools SNP 50716 50716 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold492 SAMTools SNP 126449 126449 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C63%2C0:99 scaffold492 SAMTools SNP 126458 126458 65.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold492 SAMTools SNP 178555 178555 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold492 SAMTools SNP 178581 178581 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold492 SAMTools SNP 181559 181559 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold492 SAMTools SNP 181967 181967 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold492 SAMTools SNP 182573 182573 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C49%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold492 SAMTools SNP 182840 182840 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C15%2C4%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.00075%2C0.0047%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold492 SAMTools SNP 183006 183006 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C42%2C27%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D3.6e-07%2C8.2e-12%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold492 SAMTools SNP 183009 183009 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C42%2C35%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D6.6e-10%2C2.2e-13%2C1%2C3.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold492 SAMTools SNP 183582 183582 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold492 SAMTools SNP 183672 183672 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C10%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.29%2C0.0018%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C44:47 scaffold492 SAMTools SNP 184094 184094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C30%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold492 SAMTools SNP 184163 184163 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold492 SAMTools SNP 184189 184189 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold492 SAMTools SNP 184994 184994 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold492 SAMTools SNP 185039 185039 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.47%2C0.045%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C219:85 scaffold492 SAMTools SNP 186791 186791 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 188137 188137 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C11%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0005%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold492 SAMTools SNP 188278 188278 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C35%2C14%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 189385 189385 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold492 SAMTools SNP 189440 189440 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C35%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.29%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 191900 191900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 191924 191924 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 192254 192254 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold492 SAMTools SNP 193458 193458 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C226:71 scaffold492 SAMTools SNP 193480 193480 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold492 SAMTools SNP 193509 193509 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold492 SAMTools SNP 194332 194332 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.26%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold492 SAMTools SNP 194374 194374 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C27%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.49%2C1.2e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold492 SAMTools SNP 196430 196430 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D54.7%3BPV4%3D1%2C3.5e-17%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C82:85 scaffold492 SAMTools SNP 196473 196473 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C4%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.42%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold492 SAMTools SNP 196478 196478 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C17%3BMQ%3D50%3BFQ%3D118%3BPV4%3D2.3e-05%2C3.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold492 SAMTools SNP 196494 196494 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C23%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D4.4e-05%2C0.053%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold492 SAMTools SNP 198343 198343 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 198384 198384 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.14%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold492 SAMTools SNP 198825 198825 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C54%2C0%2C72%3BMQ%3D50%3BFQ%3D63%3BPV4%3D2.2e-08%2C6.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold492 SAMTools SNP 199874 199874 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.02%2C0.00017%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold492 SAMTools SNP 199877 199877 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C16%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C221:99 scaffold492 SAMTools SNP 200337 200337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold492 SAMTools SNP 200964 200964 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold492 SAMTools SNP 207446 207446 26.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold492 SAMTools SNP 209495 209495 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 209996 209996 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold492 SAMTools SNP 210200 210200 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 210666 210666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C11%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold492 SAMTools SNP 210819 210819 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C6%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold492 SAMTools SNP 210834 210834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold492 SAMTools SNP 211093 211093 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold492 SAMTools SNP 211789 211789 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.14%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold492 SAMTools SNP 211801 211801 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 211819 211819 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.67%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold492 SAMTools SNP 213335 213335 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C15%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold492 SAMTools SNP 216874 216874 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C3%2C43%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.71%2C3.9e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold492 SAMTools SNP 218792 218792 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold492 SAMTools SNP 222935 222935 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold492 SAMTools SNP 225514 225514 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.3%2C1%2C1%2C6.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold492 SAMTools SNP 226301 226301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold492 SAMTools SNP 227504 227504 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 227710 227710 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 227860 227860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 232471 232471 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 232639 232639 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold492 SAMTools SNP 232714 232714 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold492 SAMTools SNP 232739 232739 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.043%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold492 SAMTools SNP 234433 234433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 234647 234647 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C8%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold492 SAMTools SNP 234890 234890 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C25%2C0%2C13%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0051%2C4.4e-18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold492 SAMTools SNP 234934 234934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C23%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold492 SAMTools SNP 235494 235494 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 236944 236944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 246562 246562 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D16%2C4%2C7%2C6%3BMQ%3D15%3BFQ%3D-36%3BPV4%3D0.14%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold492 SAMTools SNP 251642 251642 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C27%2C0:51 scaffold492 SAMTools SNP 252079 252079 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C4%3BMQ%3D21%3BFQ%3D-50%3BPV4%3D0.45%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C23%2C0:43 scaffold492 SAMTools SNP 253014 253014 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C11%2C18%3BMQ%3D35%3BFQ%3D-80%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C53%2C0:99 scaffold492 SAMTools SNP 262839 262839 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold492 SAMTools SNP 264651 264651 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold492 SAMTools SNP 265084 265084 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 265147 265147 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 265321 265321 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 265405 265405 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 265966 265966 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 266281 266281 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold492 SAMTools SNP 266477 266477 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 266479 266479 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold492 SAMTools SNP 266768 266768 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C147:99 scaffold492 SAMTools SNP 266792 266792 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.28%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold492 SAMTools SNP 266948 266948 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold492 SAMTools SNP 267326 267326 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold492 SAMTools SNP 267337 267337 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold492 SAMTools SNP 267478 267478 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold492 SAMTools SNP 267482 267482 118 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold492 SAMTools SNP 272557 272557 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold492 SAMTools SNP 275153 275153 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold492 SAMTools SNP 277959 277959 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C10%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 279265 279265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C5%2C53%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 279924 279924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.3%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 280053 280053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C19%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 280315 280315 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C55%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 280435 280435 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C73%2C10%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 281842 281842 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C10%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold492 SAMTools SNP 281853 281853 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C14%2C0%3BMQ%3D49%3BFQ%3D185%3BPV4%3D0.0022%2C0.42%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold492 SAMTools SNP 281884 281884 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C12%2C1%3BMQ%3D49%3BFQ%3D131%3BPV4%3D0.35%2C3.3e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold492 SAMTools SNP 281976 281976 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C3%2C3%3BMQ%3D49%3BFQ%3D101%3BPV4%3D0.65%2C0.46%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold492 SAMTools SNP 281982 281982 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C4%2C4%3BMQ%3D49%3BFQ%3D154%3BPV4%3D0.69%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold492 SAMTools SNP 283784 283784 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 285710 285710 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 286125 286125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 286137 286137 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold492 SAMTools SNP 286837 286837 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C5%3BMQ%3D49%3BFQ%3D181%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold492 SAMTools SNP 287536 287536 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C18%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold492 SAMTools SNP 287563 287563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C18%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold492 SAMTools SNP 287674 287674 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C108%2C0:99 scaffold492 SAMTools SNP 294258 294258 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold492 SAMTools SNP 294425 294425 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold492 SAMTools SNP 325837 325837 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold492 SAMTools SNP 345176 345176 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold492 SAMTools SNP 345437 345437 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold492 SAMTools SNP 346641 346641 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 347365 347365 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 347487 347487 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold492 SAMTools SNP 347554 347554 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold492 SAMTools SNP 347848 347848 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold492 SAMTools SNP 347911 347911 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C54%2C0:99 scaffold492 SAMTools SNP 347932 347932 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold492 SAMTools SNP 348229 348229 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold492 SAMTools SNP 348566 348566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold492 SAMTools SNP 353043 353043 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 358407 358407 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold492 SAMTools SNP 359341 359341 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold492 SAMTools SNP 359360 359360 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold492 SAMTools SNP 378284 378284 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C36%2C0:69 scaffold492 SAMTools SNP 378374 378374 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold492 SAMTools SNP 379160 379160 92.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold492 SAMTools SNP 379281 379281 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D46%3BFQ%3D114%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C179:99 scaffold492 SAMTools SNP 379752 379752 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C51%2C0:99 scaffold492 SAMTools SNP 381610 381610 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C14%2C0%3BMQ%3D49%3BFQ%3D162%3BPV4%3D1%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold492 SAMTools SNP 382352 382352 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold492 SAMTools SNP 382425 382425 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold492 SAMTools SNP 384693 384693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold492 SAMTools SNP 386391 386391 104 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C30%2C21%2C133%2C0%2C130:16 scaffold492 SAMTools SNP 386438 386438 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 386465 386465 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 390272 390272 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D46%3BFQ%3D9.96%3BPV4%3D1%2C0.01%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C46:38 scaffold492 SAMTools SNP 391032 391032 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold492 SAMTools SNP 391055 391055 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold492 SAMTools SNP 391331 391331 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C1%2C10%3BMQ%3D49%3BFQ%3D146%3BPV4%3D0.014%2C0.15%2C0.05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold492 SAMTools SNP 391363 391363 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold492 SAMTools SNP 401069 401069 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold492 SAMTools SNP 401086 401086 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D48%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold492 SAMTools SNP 403191 403191 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 403340 403340 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C5.6e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold492 SAMTools SNP 403460 403460 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C30%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.4%2C2.1e-37%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold492 SAMTools SNP 403664 403664 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold492 SAMTools SNP 406228 406228 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 406366 406366 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold492 SAMTools SNP 430935 430935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 431003 431003 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 431423 431423 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 431621 431621 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C20%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold492 SAMTools SNP 432251 432251 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 432317 432317 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C14%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.63%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold492 SAMTools SNP 432350 432350 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C63%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold492 SAMTools SNP 433474 433474 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C27%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 435009 435009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 435022 435022 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.065%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold492 SAMTools SNP 435319 435319 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0021%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 438098 438098 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.55%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C252:99 scaffold492 SAMTools SNP 438603 438603 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C0.028%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold492 SAMTools SNP 440813 440813 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold492 SAMTools SNP 441125 441125 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.23%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold492 SAMTools SNP 443833 443833 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 444096 444096 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold492 SAMTools SNP 444297 444297 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.43%2C0.0004%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C136:92 scaffold492 SAMTools SNP 444498 444498 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C24%2C0:45 scaffold492 SAMTools SNP 444831 444831 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C4.3e-17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold492 SAMTools SNP 445299 445299 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 445333 445333 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold492 SAMTools SNP 445375 445375 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold492 SAMTools SNP 448442 448442 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C4%2C20%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.11%2C4.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold492 SAMTools SNP 449624 449624 68 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C57%2C33%2C104%2C0%2C92:45 scaffold492 SAMTools SNP 451214 451214 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 452467 452467 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C147:99 scaffold492 SAMTools SNP 452512 452512 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C119:99 scaffold492 SAMTools SNP 452517 452517 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.0069%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold492 SAMTools SNP 452770 452770 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold492 SAMTools SNP 456502 456502 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold492 SAMTools SNP 456712 456712 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold492 SAMTools SNP 456721 456721 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold492 SAMTools SNP 457001 457001 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.043%2C0.0034%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold492 SAMTools SNP 457210 457210 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 457234 457234 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C3%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 461123 461123 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold492 SAMTools SNP 462003 462003 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D39%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold492 SAMTools SNP 462501 462501 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold492 SAMTools SNP 462906 462906 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold492 SAMTools SNP 463584 463584 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold492 SAMTools SNP 464638 464638 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 474357 474357 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 475229 475229 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold492 SAMTools SNP 483421 483421 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 483974 483974 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold492 SAMTools SNP 483996 483996 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold492 SAMTools SNP 484940 484940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold492 SAMTools SNP 484944 484944 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 485493 485493 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C55%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold492 SAMTools SNP 485895 485895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 486420 486420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.35%2C0.075%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold492 SAMTools SNP 486944 486944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C20%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold492 SAMTools SNP 486968 486968 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.39%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 487485 487485 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C31%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 487518 487518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 487822 487822 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C87%2C11%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 487846 487846 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C75%2C6%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 487856 487856 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C0%2C20%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00076%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold492 SAMTools SNP 487939 487939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold492 SAMTools SNP 487969 487969 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold492 SAMTools SNP 488145 488145 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C30%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C8.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold492 SAMTools SNP 490516 490516 47.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold492 SAMTools SNP 490925 490925 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C205:74 scaffold492 SAMTools SNP 491111 491111 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold492 SAMTools SNP 491311 491311 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C17%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold492 SAMTools SNP 491349 491349 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 491962 491962 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold492 SAMTools SNP 492347 492347 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold492 SAMTools SNP 492353 492353 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 492832 492832 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 494007 494007 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold492 SAMTools SNP 495951 495951 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C1.8e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C226:34 scaffold492 SAMTools SNP 495954 495954 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold492 SAMTools SNP 495977 495977 199 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23%2C244%2C0%2C241:45 scaffold492 SAMTools SNP 496352 496352 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C87%2C0:99 scaffold492 SAMTools SNP 497230 497230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold492 SAMTools SNP 498694 498694 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold492 SAMTools SNP 499221 499221 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold492 SAMTools SNP 499242 499242 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold492 SAMTools SNP 499300 499300 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold492 SAMTools SNP 499320 499320 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold492 SAMTools SNP 504486 504486 164 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C54%2C0%2C192%2C37%2C189:99 scaffold492 SAMTools SNP 504510 504510 44.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold492 SAMTools SNP 504535 504535 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 518374 518374 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 518634 518634 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold492 SAMTools SNP 519099 519099 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D191%2C21%2C111%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 522447 522447 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C359%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 522469 522469 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C263%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 522711 522711 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 522738 522738 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold492 SAMTools SNP 523887 523887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold492 SAMTools SNP 524169 524169 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D1%2C1.2e-09%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C69:60 scaffold492 SAMTools SNP 525131 525131 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold492 SAMTools SNP 526124 526124 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold492 SAMTools SNP 526208 526208 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 526931 526931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold492 SAMTools SNP 533155 533155 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold492 SAMTools SNP 533194 533194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold492 SAMTools SNP 533314 533314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 533814 533814 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold492 SAMTools SNP 533877 533877 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold492 SAMTools SNP 533892 533892 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold492 SAMTools SNP 534241 534241 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold492 SAMTools SNP 534338 534338 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 536126 536126 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold492 SAMTools SNP 536129 536129 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold492 SAMTools SNP 536236 536236 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 536262 536262 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 542709 542709 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold492 SAMTools SNP 542724 542724 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C0.25%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C35:38 scaffold492 SAMTools SNP 542758 542758 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D46%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C77:80 scaffold492 SAMTools SNP 542956 542956 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold492 SAMTools SNP 542990 542990 58.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold492 SAMTools SNP 543220 543220 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 543319 543319 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 544776 544776 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C66:69 scaffold492 SAMTools SNP 546400 546400 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold492 SAMTools SNP 546511 546511 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 546863 546863 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 547382 547382 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold492 SAMTools SNP 548485 548485 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold492 SAMTools SNP 548529 548529 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold492 SAMTools SNP 549004 549004 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0315%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C35:38 scaffold492 SAMTools SNP 549410 549410 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold492 SAMTools SNP 549475 549475 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold492 SAMTools SNP 549762 549762 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold492 SAMTools SNP 550313 550313 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold492 SAMTools SNP 550676 550676 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold492 SAMTools SNP 550738 550738 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold492 SAMTools SNP 551516 551516 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.15%2C0.35%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 551791 551791 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 551809 551809 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold492 SAMTools SNP 552135 552135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold492 SAMTools SNP 552181 552181 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold492 SAMTools SNP 552455 552455 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold492 SAMTools SNP 553147 553147 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 553747 553747 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold492 SAMTools SNP 553782 553782 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold492 SAMTools SNP 553789 553789 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 553825 553825 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold492 SAMTools SNP 553956 553956 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold492 SAMTools SNP 554007 554007 8.22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold492 SAMTools SNP 554089 554089 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold492 SAMTools SNP 557707 557707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C0%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold492 SAMTools SNP 557724 557724 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 560989 560989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C1%2C91%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 560992 560992 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C20%2C49%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold492 SAMTools SNP 561004 561004 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C51%2C81%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C2.6e-86%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 567055 567055 96.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C4%3BMQ%3D34%3BFQ%3D-46%3BPV4%3D0.29%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C19%2C0:35 scaffold492 SAMTools SNP 568631 568631 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D31%2C1%2C2%2C0%3BMQ%3D12%3BFQ%3D-97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C70%2C0:95 scaffold492 SAMTools SNP 568652 568652 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D59%2C1%2C3%2C0%3BMQ%3D9%3BFQ%3D-164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C137%2C0:99 scaffold492 SAMTools SNP 570013 570013 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C81%2C0:99 scaffold492 SAMTools SNP 570715 570715 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C73%2C6%2C22%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0016%2C2e-16%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold492 SAMTools SNP 574136 574136 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D559%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold492 SAMTools SNP 575613 575613 4.76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D20%2C0%2C101%2C1%3BMQ%3D5%3BFQ%3D-168%3BPV4%3D1%2C0.4%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C141%2C0:42 scaffold492 SAMTools SNP 576476 576476 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C37%2C26%2C0%3BMQ%3D40%3BFQ%3D47%3BPV4%3D3.5e-11%2C2.7e-16%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold492 SAMTools SNP 576948 576948 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C11%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold492 SAMTools SNP 577756 577756 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 577777 577777 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C11%2C105%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-06%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 578063 578063 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D847%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C218%2C458%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1.6e-94%2C1.2e-169%2C1%2C2.4e-84;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold492 SAMTools SNP 578088 578088 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C457%2C21%2C96%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold492 SAMTools SNP 578100 578100 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D796%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C652%2C21%2C94%3BMQ%3D50%3BFQ%3D38%3BPV4%3D7.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold492 SAMTools SNP 578317 578317 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D658%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C548%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 578339 578339 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C226%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 579060 579060 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold492 SAMTools SNP 584793 584793 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold492 SAMTools SNP 584834 584834 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 585741 585741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C11%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold492 SAMTools SNP 589968 589968 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold492 SAMTools SNP 592026 592026 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold492 SAMTools SNP 592094 592094 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C24%2C43%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 596029 596029 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C45%2C0%2C22%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.017%2C2.9e-08%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold492 SAMTools SNP 596745 596745 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold492 SAMTools SNP 596854 596854 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold492 SAMTools SNP 596884 596884 63.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold492 SAMTools SNP 598705 598705 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C16%2C34%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C9.7e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 598729 598729 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.00073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 602910 602910 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C24%2C0%2C19%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1.4e-05%2C6e-10%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold492 SAMTools SNP 603304 603304 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C0%2C28%3BMQ%3D50%3BFQ%3D173%3BPV4%3D2e-09%2C1.8e-09%2C1%2C5.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold492 SAMTools SNP 603727 603727 46.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold492 SAMTools SNP 603932 603932 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C17%2C16%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C2.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold492 SAMTools SNP 604249 604249 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C33%2C0:63 scaffold492 SAMTools SNP 604600 604600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold492 SAMTools SNP 604933 604933 40.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold492 SAMTools SNP 605068 605068 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold492 SAMTools SNP 607266 607266 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C8%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C199%2C0:99 scaffold492 SAMTools SNP 607649 607649 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C1%2C64%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 607941 607941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 608100 608100 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 608409 608409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold492 SAMTools SNP 612674 612674 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 630667 630667 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 630749 630749 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold492 SAMTools SNP 630764 630764 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 630878 630878 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold492 SAMTools SNP 632237 632237 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 632461 632461 38.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold492 SAMTools SNP 633169 633169 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.36%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C17:20 scaffold492 SAMTools SNP 633241 633241 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C38:41 scaffold492 SAMTools SNP 633247 633247 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold492 SAMTools SNP 633927 633927 52.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C94%2C88%2C86%2C0%2C80:10 scaffold492 SAMTools SNP 634085 634085 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold492 SAMTools SNP 634750 634750 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold492 SAMTools SNP 634774 634774 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold492 SAMTools SNP 635768 635768 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold492 SAMTools SNP 635902 635902 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 635905 635905 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold492 SAMTools SNP 636671 636671 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 636704 636704 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 637012 637012 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 637558 637558 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold492 SAMTools SNP 637611 637611 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold492 SAMTools SNP 637707 637707 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold492 SAMTools SNP 637733 637733 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold492 SAMTools SNP 637963 637963 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C9%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.37%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold492 SAMTools SNP 637973 637973 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C0.18%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold492 SAMTools SNP 638074 638074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C6%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold492 SAMTools SNP 646676 646676 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 646690 646690 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 647969 647969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold492 SAMTools SNP 648521 648521 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold492 SAMTools SNP 648559 648559 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.67%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold492 SAMTools SNP 648752 648752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold492 SAMTools SNP 648782 648782 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.038%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 648923 648923 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold492 SAMTools SNP 648928 648928 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold492 SAMTools SNP 649049 649049 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold492 SAMTools SNP 650478 650478 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 650710 650710 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold492 SAMTools SNP 651985 651985 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold492 SAMTools SNP 652063 652063 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold492 SAMTools SNP 653774 653774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold492 SAMTools SNP 654717 654717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold492 SAMTools SNP 655023 655023 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold492 SAMTools SNP 655110 655110 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0:56 scaffold492 SAMTools SNP 655310 655310 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 655343 655343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 655346 655346 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.37%2C1%2C2.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold492 SAMTools SNP 655552 655552 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold492 SAMTools SNP 657886 657886 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold492 SAMTools SNP 660003 660003 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 660603 660603 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C2.8e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C233:87 scaffold492 SAMTools SNP 660642 660642 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold492 SAMTools SNP 660645 660645 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold492 SAMTools SNP 660821 660821 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold492 SAMTools SNP 660836 660836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C9%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.096%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold492 SAMTools SNP 661014 661014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold492 SAMTools SNP 661086 661086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold492 SAMTools SNP 661093 661093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold492 SAMTools SNP 661804 661804 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.026%2C0.49%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold492 SAMTools SNP 662314 662314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold492 SAMTools SNP 662326 662326 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 663237 663237 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold492 SAMTools SNP 670063 670063 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold492 SAMTools SNP 673193 673193 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 675898 675898 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.58%2C0.24%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold492 SAMTools SNP 678046 678046 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.42%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold492 SAMTools SNP 683592 683592 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0096%2C0.067%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold492 SAMTools SNP 683664 683664 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold492 SAMTools SNP 683688 683688 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D47%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold492 SAMTools SNP 685117 685117 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.032%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 685384 685384 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.022%2C3.1e-07%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C202:31 scaffold492 SAMTools SNP 685391 685391 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C27%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.00092%2C0.00023%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C222:99 scaffold492 SAMTools SNP 685887 685887 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.49%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold492 SAMTools SNP 685900 685900 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C17%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold492 SAMTools SNP 686426 686426 43 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.024%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold492 SAMTools SNP 687958 687958 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.22%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C146:99 scaffold492 SAMTools SNP 688910 688910 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.48%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold492 SAMTools SNP 689013 689013 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.6%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold492 SAMTools SNP 689047 689047 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 689261 689261 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0015%2C0.092%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold492 SAMTools SNP 689277 689277 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.63%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold492 SAMTools SNP 689690 689690 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.64%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold492 SAMTools SNP 689723 689723 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.00011%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold492 SAMTools SNP 689778 689778 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0016%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold492 SAMTools SNP 690090 690090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C12%2C58%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0085%2C3.1e-25%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold492 SAMTools SNP 690121 690121 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C91%2C0%2C28%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C3.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold492 SAMTools SNP 690142 690142 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C65%2C0%2C17%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.3e-14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold492 SAMTools SNP 690161 690161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C6%2C51%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold492 SAMTools SNP 691152 691152 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold492 SAMTools SNP 691392 691392 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C58%2C39%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1.3e-14%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold492 SAMTools SNP 691488 691488 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C46%2C19%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 692002 692002 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold492 SAMTools SNP 692007 692007 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C27%2C0:51 scaffold492 SAMTools SNP 692880 692880 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold492 SAMTools SNP 693494 693494 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D27.9%3BPV4%3D0.46%2C4e-08%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C69:58 scaffold492 SAMTools SNP 693506 693506 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C24%2C0:45 scaffold492 SAMTools SNP 693541 693541 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C3:6 scaffold492 SAMTools SNP 695201 695201 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 695241 695241 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 696249 696249 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold492 SAMTools SNP 698212 698212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C16%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold492 SAMTools SNP 698269 698269 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold492 SAMTools SNP 698479 698479 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold492 SAMTools SNP 698492 698492 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 699635 699635 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold492 SAMTools SNP 699886 699886 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C21%2C0:33 scaffold492 SAMTools SNP 701125 701125 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C192%2C0%2C149%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.012%2C9.2e-283%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold492 SAMTools SNP 701443 701443 10.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold492 SAMTools SNP 705691 705691 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold492 SAMTools SNP 705724 705724 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold492 SAMTools SNP 706077 706077 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 706093 706093 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 706737 706737 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold492 SAMTools SNP 707042 707042 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 707127 707127 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold492 SAMTools SNP 707515 707515 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold492 SAMTools SNP 707548 707548 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold492 SAMTools SNP 707705 707705 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 711590 711590 17.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold492 SAMTools SNP 715093 715093 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.016%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold492 SAMTools SNP 716366 716366 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold492 SAMTools SNP 716408 716408 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.44%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C132:99 scaffold492 SAMTools SNP 717457 717457 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold492 SAMTools SNP 718807 718807 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C0:53 scaffold492 SAMTools SNP 735791 735791 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 736075 736075 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 736385 736385 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold492 SAMTools SNP 747278 747278 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold492 SAMTools SNP 747437 747437 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold492 SAMTools SNP 757577 757577 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0009%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C9:12 scaffold492 SAMTools SNP 757941 757941 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold492 SAMTools SNP 759798 759798 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold492 SAMTools SNP 761105 761105 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C255%2C0:99 scaffold492 SAMTools SNP 762353 762353 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C238%2C0:99 scaffold492 SAMTools SNP 772006 772006 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C102%2C0:99 scaffold492 SAMTools SNP 772429 772429 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C43%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold492 SAMTools SNP 774238 774238 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold492 SAMTools SNP 787575 787575 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold492 SAMTools SNP 799375 799375 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D28.9%3BPV4%3D1%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C71:59 scaffold492 SAMTools SNP 799497 799497 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1.9e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C65:68 scaffold492 SAMTools SNP 799549 799549 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C2%2C19%2C5%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold492 SAMTools SNP 799562 799562 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.12%2C0.23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold492 SAMTools SNP 800396 800396 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.026%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold492 SAMTools SNP 800397 800397 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold492 SAMTools SNP 800961 800961 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.3%2C0.0046%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold492 SAMTools SNP 809684 809684 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 813105 813105 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 821883 821883 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold492 SAMTools SNP 826771 826771 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 842252 842252 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold492 SAMTools SNP 851236 851236 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold492 SAMTools SNP 864001 864001 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 864018 864018 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 864577 864577 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold492 SAMTools SNP 868882 868882 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold492 SAMTools SNP 881579 881579 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold492 SAMTools SNP 881643 881643 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D185%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C216:99 scaffold492 SAMTools SNP 884246 884246 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 885895 885895 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.68%2C0.042%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 885945 885945 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold492 SAMTools SNP 887711 887711 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold492 SAMTools SNP 887734 887734 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold492 SAMTools SNP 891328 891328 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C0%2C155%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 893717 893717 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C1%2C169%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0066%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 893718 893718 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C1%2C105%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold492 SAMTools SNP 900090 900090 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold492 SAMTools SNP 902896 902896 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.17%2C0.42%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold492 SAMTools SNP 902911 902911 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.033%2C2.3e-08%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold492 SAMTools SNP 902927 902927 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.011%2C3.7e-05%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold492 SAMTools SNP 909436 909436 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold492 SAMTools SNP 913556 913556 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 914205 914205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold492 SAMTools SNP 914829 914829 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold492 SAMTools SNP 914843 914843 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold492 SAMTools SNP 915402 915402 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 915594 915594 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold492 SAMTools SNP 917865 917865 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C248:66 scaffold492 SAMTools SNP 956771 956771 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold492 SAMTools SNP 956810 956810 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.61%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C35:38 scaffold492 SAMTools SNP 957552 957552 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold492 SAMTools SNP 957608 957608 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold492 SAMTools SNP 961651 961651 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold492 SAMTools SNP 961965 961965 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold492 SAMTools SNP 962299 962299 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold492 SAMTools SNP 972220 972220 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold492 SAMTools SNP 975234 975234 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold492 SAMTools SNP 975685 975685 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold493 SAMTools SNP 23329 23329 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C2%2C9%2C13%3BMQ%3D33%3BFQ%3D-50%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C23%2C0:43 scaffold493 SAMTools SNP 24197 24197 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold493 SAMTools SNP 24219 24219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold493 SAMTools SNP 25521 25521 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C99%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.003%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold493 SAMTools SNP 25577 25577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C29%2C67%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 25978 25978 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C255%2C0:99 scaffold493 SAMTools SNP 26398 26398 205 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17%2C218%2C0%2C215:57 scaffold493 SAMTools SNP 26413 26413 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C48%2C0:93 scaffold493 SAMTools SNP 26503 26503 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.2%2C5.8e-17%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C197:50 scaffold493 SAMTools SNP 26594 26594 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold493 SAMTools SNP 27559 27559 95.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold493 SAMTools SNP 28295 28295 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C24%2C0:45 scaffold493 SAMTools SNP 31011 31011 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.071%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold493 SAMTools SNP 32046 32046 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold493 SAMTools SNP 32052 32052 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold493 SAMTools SNP 35953 35953 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold493 SAMTools SNP 35996 35996 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold493 SAMTools SNP 37269 37269 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold493 SAMTools SNP 39050 39050 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold493 SAMTools SNP 39059 39059 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold493 SAMTools SNP 39071 39071 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold493 SAMTools SNP 45093 45093 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold493 SAMTools SNP 56582 56582 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold493 SAMTools SNP 57158 57158 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold493 SAMTools SNP 57215 57215 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C179:99 scaffold493 SAMTools SNP 58535 58535 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold493 SAMTools SNP 61603 61603 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C21%2C0:39 scaffold493 SAMTools SNP 61994 61994 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold493 SAMTools SNP 77962 77962 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold493 SAMTools SNP 78370 78370 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold493 SAMTools SNP 79561 79561 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold493 SAMTools SNP 81390 81390 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold493 SAMTools SNP 81840 81840 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold493 SAMTools SNP 85028 85028 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold493 SAMTools SNP 85507 85507 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold493 SAMTools SNP 85667 85667 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold493 SAMTools SNP 85793 85793 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D28%3BFQ%3D39.8%3BPV4%3D0.51%2C0.49%2C0.32%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C68:70 scaffold493 SAMTools SNP 86041 86041 207 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C33%2C0:63 scaffold493 SAMTools SNP 86195 86195 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C4%3BMQ%3D45%3BFQ%3D-50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C23%2C0:43 scaffold493 SAMTools SNP 86257 86257 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D23%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold493 SAMTools SNP 99419 99419 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold493 SAMTools SNP 99451 99451 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold493 SAMTools SNP 99469 99469 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold493 SAMTools SNP 99800 99800 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C20%2C10%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C0.00014%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 100082 100082 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C3%2C4%3BMQ%3D36%3BFQ%3D68%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C212:98 scaffold493 SAMTools SNP 100237 100237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D28%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold493 SAMTools SNP 100411 100411 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C4%3BMQ%3D44%3BFQ%3D114%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C237:99 scaffold493 SAMTools SNP 105308 105308 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C5%2C21%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.77%2C6.3e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold493 SAMTools SNP 108393 108393 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C0%2C29%3BMQ%3D50%3BFQ%3D216%3BPV4%3D4.1e-05%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold493 SAMTools SNP 108415 108415 146 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C10%2C4%3BMQ%3D49%3BFQ%3D149%3BPV4%3D1%2C0.019%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold493 SAMTools SNP 121011 121011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold493 SAMTools SNP 121442 121442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold493 SAMTools SNP 121499 121499 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C42%2C54%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.39%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 121668 121668 39.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold493 SAMTools SNP 123858 123858 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C0%2C20%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.55%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold493 SAMTools SNP 123870 123870 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C9.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold493 SAMTools SNP 123924 123924 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C28%2C20%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1.9e-05%2C2.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold493 SAMTools SNP 123936 123936 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold493 SAMTools SNP 126965 126965 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold493 SAMTools SNP 127005 127005 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold493 SAMTools SNP 127640 127640 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C108%2C66%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 127838 127838 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C201%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C255%2C0:99 scaffold493 SAMTools SNP 127937 127937 219 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D547%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C221%2C195%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C255%2C0%2C249%2C255%2C246:99 scaffold493 SAMTools SNP 129648 129648 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.43%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C28:31 scaffold493 SAMTools SNP 130427 130427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold493 SAMTools SNP 131564 131564 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C3%2C60%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.26%2C2.3e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold493 SAMTools SNP 131915 131915 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C5.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C198:80 scaffold493 SAMTools SNP 131924 131924 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.012%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C184:53 scaffold493 SAMTools SNP 132461 132461 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold493 SAMTools SNP 132900 132900 45.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold493 SAMTools SNP 133394 133394 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold493 SAMTools SNP 133610 133610 124 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C132%2C0%2C138%2C97%2C135:99 scaffold493 SAMTools SNP 134090 134090 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C2.8e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 134214 134214 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold493 SAMTools SNP 134257 134257 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 134652 134652 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C10%2C14%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.59%2C7.2e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold493 SAMTools SNP 134912 134912 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C47%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold493 SAMTools SNP 135339 135339 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C16%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.14%2C1.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold493 SAMTools SNP 135975 135975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 136634 136634 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold493 SAMTools SNP 156474 156474 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold493 SAMTools SNP 158469 158469 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold493 SAMTools SNP 159426 159426 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.33%2C0.0019%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C80:56 scaffold493 SAMTools SNP 159467 159467 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold493 SAMTools SNP 160670 160670 63.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold493 SAMTools SNP 160684 160684 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold493 SAMTools SNP 160699 160699 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold493 SAMTools SNP 161060 161060 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold493 SAMTools SNP 161219 161219 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold493 SAMTools SNP 161240 161240 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C18%2C0:33 scaffold493 SAMTools SNP 161788 161788 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold493 SAMTools SNP 161794 161794 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold493 SAMTools SNP 161816 161816 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold493 SAMTools SNP 162911 162911 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold493 SAMTools SNP 162917 162917 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold493 SAMTools SNP 163740 163740 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.00099%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold493 SAMTools SNP 164107 164107 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C206:99 scaffold493 SAMTools SNP 164349 164349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold493 SAMTools SNP 165230 165230 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C230:56 scaffold493 SAMTools SNP 172905 172905 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold493 SAMTools SNP 173210 173210 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.42%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C222:44 scaffold493 SAMTools SNP 174166 174166 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 1543 1543 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C410%2C35%2C344%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-13%2C1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 28925 28925 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold496 SAMTools SNP 30187 30187 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 31300 31300 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C5%3BMQ%3D28%3BFQ%3D66%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C93:96 scaffold496 SAMTools SNP 31336 31336 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C14%2C8%3BMQ%3D34%3BFQ%3D51%3BPV4%3D0.13%2C0.053%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C78:81 scaffold496 SAMTools SNP 31553 31553 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.063%2C0.00013%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold496 SAMTools SNP 31556 31556 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.024%2C0.00052%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold496 SAMTools SNP 31661 31661 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C234:99 scaffold496 SAMTools SNP 32003 32003 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold496 SAMTools SNP 32640 32640 105 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C27%2C0:51 scaffold496 SAMTools SNP 32698 32698 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D48%3BFQ%3D42%3BPV4%3D1%2C0.017%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C246:72 scaffold496 SAMTools SNP 32707 32707 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C2%3BMQ%3D48%3BFQ%3D111%3BPV4%3D0.6%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold496 SAMTools SNP 32927 32927 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold496 SAMTools SNP 34324 34324 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold496 SAMTools SNP 34329 34329 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold496 SAMTools SNP 34370 34370 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 34567 34567 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 34579 34579 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold496 SAMTools SNP 34828 34828 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0021%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold496 SAMTools SNP 39572 39572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold496 SAMTools SNP 52123 52123 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold496 SAMTools SNP 52924 52924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 52962 52962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C26%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C0.45%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold496 SAMTools SNP 52975 52975 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold496 SAMTools SNP 53302 53302 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C123%2C0:99 scaffold496 SAMTools SNP 53315 53315 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C23%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.67%2C4.9e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold496 SAMTools SNP 53365 53365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 53623 53623 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.12%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 54106 54106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 54621 54621 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C31%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.13%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold496 SAMTools SNP 54969 54969 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.039%2C8e-06%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold496 SAMTools SNP 57935 57935 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold496 SAMTools SNP 58908 58908 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.051%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 58940 58940 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.097%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold496 SAMTools SNP 59073 59073 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 59641 59641 182 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C2.8e-23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C245:99 scaffold496 SAMTools SNP 59701 59701 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0076%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold496 SAMTools SNP 60051 60051 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C33%2C0:61 scaffold496 SAMTools SNP 65009 65009 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C11%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 65030 65030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C60%2C12%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 66691 66691 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.081%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 67713 67713 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold496 SAMTools SNP 67797 67797 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C87%2C0:99 scaffold496 SAMTools SNP 67827 67827 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold496 SAMTools SNP 68278 68278 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C0.071%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold496 SAMTools SNP 68322 68322 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C3.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C26:29 scaffold496 SAMTools SNP 68661 68661 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold496 SAMTools SNP 69393 69393 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold496 SAMTools SNP 69472 69472 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C117%2C0:99 scaffold496 SAMTools SNP 69762 69762 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C9%2C0:16 scaffold496 SAMTools SNP 70573 70573 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold496 SAMTools SNP 70636 70636 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold496 SAMTools SNP 71017 71017 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D48%3BPV4%3D9e-06%2C2.7e-11%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold496 SAMTools SNP 71030 71030 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.58%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold496 SAMTools SNP 71232 71232 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.3%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold496 SAMTools SNP 71277 71277 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.34%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold496 SAMTools SNP 71882 71882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold496 SAMTools SNP 71969 71969 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C2.4e-10%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 71975 71975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 75081 75081 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C32%2C13%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 76308 76308 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C7%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D2.9e-05%2C4.6e-08%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold496 SAMTools SNP 76313 76313 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 76358 76358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 76493 76493 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 76551 76551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.011%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold496 SAMTools SNP 76711 76711 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 78099 78099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C30%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C239:99 scaffold496 SAMTools SNP 78109 78109 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C21%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C252:99 scaffold496 SAMTools SNP 78440 78440 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2250%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2247%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 81106 81106 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5531%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2892%2C27%2C2576%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C3.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 82119 82119 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1778%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D871%2C91%2C757%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 82768 82768 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1612%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D442%2C420%2C354%2C180%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 83729 83729 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D754%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C77%2C16%3BMQ%3D50%3BFQ%3D-277%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold496 SAMTools SNP 83759 83759 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C143%2C6%2C49%3BMQ%3D50%3BFQ%3D31%3BPV4%3D5.8e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold496 SAMTools SNP 84138 84138 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D743%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C230%2C22%2C436%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-08%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 84183 84183 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D663%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C195%2C5%2C311%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 84607 84607 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C33%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.042%2C0.00036%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C210:99 scaffold496 SAMTools SNP 85487 85487 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold496 SAMTools SNP 87888 87888 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold496 SAMTools SNP 88049 88049 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold496 SAMTools SNP 88485 88485 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold496 SAMTools SNP 93520 93520 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.014%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold496 SAMTools SNP 94037 94037 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C45%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold496 SAMTools SNP 94174 94174 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 94246 94246 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold496 SAMTools SNP 94247 94247 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold496 SAMTools SNP 94974 94974 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C30%2C13%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.11%2C5.3e-62%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold496 SAMTools SNP 95006 95006 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C0%2C36%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.15%2C0.012%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold496 SAMTools SNP 95354 95354 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C24%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 96378 96378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 96536 96536 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 96623 96623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold496 SAMTools SNP 96780 96780 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 96803 96803 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 97850 97850 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold496 SAMTools SNP 97852 97852 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 97889 97889 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold496 SAMTools SNP 98006 98006 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold496 SAMTools SNP 98025 98025 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.53%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold496 SAMTools SNP 98035 98035 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold496 SAMTools SNP 98061 98061 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C7%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold496 SAMTools SNP 98654 98654 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 99078 99078 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold496 SAMTools SNP 99563 99563 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold496 SAMTools SNP 99594 99594 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 99616 99616 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold496 SAMTools SNP 100113 100113 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold496 SAMTools SNP 100121 100121 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold496 SAMTools SNP 100160 100160 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C197:99 scaffold496 SAMTools SNP 100732 100732 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold496 SAMTools SNP 100825 100825 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold496 SAMTools SNP 100872 100872 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold496 SAMTools SNP 101096 101096 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold496 SAMTools SNP 101722 101722 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold496 SAMTools SNP 102666 102666 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 109004 109004 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold496 SAMTools SNP 109017 109017 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold496 SAMTools SNP 111940 111940 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold496 SAMTools SNP 124640 124640 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.016%2C0.0014%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold496 SAMTools SNP 128048 128048 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 134728 134728 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 139124 139124 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 143782 143782 6.2 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold496 SAMTools SNP 155991 155991 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 156030 156030 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 156742 156742 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.15%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold496 SAMTools SNP 158656 158656 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold496 SAMTools SNP 158673 158673 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold496 SAMTools SNP 158921 158921 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C20%2C10%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.37%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold496 SAMTools SNP 159350 159350 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold496 SAMTools SNP 159361 159361 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C7.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 159608 159608 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C18%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 159991 159991 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C223:99 scaffold496 SAMTools SNP 160484 160484 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold496 SAMTools SNP 160527 160527 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 164949 164949 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold496 SAMTools SNP 164985 164985 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.23%2C0.24%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold496 SAMTools SNP 165172 165172 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 165972 165972 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C0%2C60%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.42%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold496 SAMTools SNP 165985 165985 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C224%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 166216 166216 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C41%2C52%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 166267 166267 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D402%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold496 SAMTools SNP 166327 166327 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C13%2C23%3BMQ%3D50%3BFQ%3D-102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold496 SAMTools SNP 166685 166685 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C26%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 167044 167044 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold496 SAMTools SNP 168232 168232 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold496 SAMTools SNP 168410 168410 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.16%2C0.46%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C86:89 scaffold496 SAMTools SNP 168419 168419 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C6.5e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold496 SAMTools SNP 168617 168617 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 168800 168800 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold496 SAMTools SNP 168814 168814 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold496 SAMTools SNP 174225 174225 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 174226 174226 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C134:99 scaffold496 SAMTools SNP 174247 174247 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 174666 174666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C80%2C36%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 174795 174795 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 174807 174807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C22%2C77%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 176054 176054 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold496 SAMTools SNP 176499 176499 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 177167 177167 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold496 SAMTools SNP 177195 177195 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold496 SAMTools SNP 178120 178120 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 178142 178142 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 178289 178289 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 178308 178308 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 178345 178345 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 178646 178646 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold496 SAMTools SNP 180391 180391 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 180934 180934 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold496 SAMTools SNP 180959 180959 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold496 SAMTools SNP 180988 180988 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold496 SAMTools SNP 181349 181349 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold496 SAMTools SNP 181352 181352 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold496 SAMTools SNP 181372 181372 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold496 SAMTools SNP 183913 183913 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 183935 183935 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 184243 184243 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 184470 184470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 184492 184492 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 188387 188387 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold496 SAMTools SNP 188388 188388 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold496 SAMTools SNP 188704 188704 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 188874 188874 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold496 SAMTools SNP 188897 188897 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold496 SAMTools SNP 190385 190385 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold496 SAMTools SNP 203845 203845 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold496 SAMTools SNP 205267 205267 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold496 SAMTools SNP 205294 205294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold496 SAMTools SNP 209627 209627 17.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold496 SAMTools SNP 209975 209975 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold496 SAMTools SNP 210234 210234 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 210252 210252 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.068%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C212:76 scaffold496 SAMTools SNP 210302 210302 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold496 SAMTools SNP 210451 210451 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold496 SAMTools SNP 212326 212326 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C23%2C0%3BMQ%3D17%3BFQ%3D29%3BPV4%3D1%2C0.36%2C0.25%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C82:59 scaffold496 SAMTools SNP 212616 212616 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 212725 212725 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C17%2C0%3BMQ%3D20%3BFQ%3D32%3BPV4%3D1%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C87:62 scaffold496 SAMTools SNP 212848 212848 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C15%3BMQ%3D20%3BFQ%3D32%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C59:62 scaffold496 SAMTools SNP 213606 213606 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold496 SAMTools SNP 215316 215316 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold496 SAMTools SNP 215321 215321 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold496 SAMTools SNP 215342 215342 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold496 SAMTools SNP 226217 226217 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C1%3BMQ%3D18%3BFQ%3D5.09%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C34:32 scaffold496 SAMTools SNP 228004 228004 53.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold496 SAMTools SNP 233346 233346 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 233881 233881 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold496 SAMTools SNP 243141 243141 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 250923 250923 52.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold496 SAMTools SNP 251072 251072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold496 SAMTools SNP 251384 251384 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold496 SAMTools SNP 252266 252266 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C10%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.3%2C0.22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold496 SAMTools SNP 252308 252308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C11%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold496 SAMTools SNP 252589 252589 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C8%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold496 SAMTools SNP 253521 253521 182 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.0036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold496 SAMTools SNP 253820 253820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C11%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.46%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 253846 253846 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 253886 253886 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C20%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold496 SAMTools SNP 254212 254212 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 254255 254255 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 254408 254408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C21%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold496 SAMTools SNP 254456 254456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 255321 255321 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C2.2e-06%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold496 SAMTools SNP 256080 256080 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 256772 256772 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold496 SAMTools SNP 256790 256790 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold496 SAMTools SNP 256883 256883 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.61%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold496 SAMTools SNP 257148 257148 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.0083%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 257676 257676 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold496 SAMTools SNP 257698 257698 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.012%2C0.0001%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold496 SAMTools SNP 259199 259199 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold496 SAMTools SNP 263272 263272 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 264268 264268 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 265530 265530 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 265551 265551 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold496 SAMTools SNP 266664 266664 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C42%2C0:81 scaffold496 SAMTools SNP 266691 266691 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C134:99 scaffold496 SAMTools SNP 266965 266965 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold496 SAMTools SNP 267279 267279 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold496 SAMTools SNP 271726 271726 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.039%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold496 SAMTools SNP 272736 272736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold496 SAMTools SNP 274311 274311 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C30%2C0%2C36%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.00015%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold496 SAMTools SNP 274893 274893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold496 SAMTools SNP 274960 274960 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold496 SAMTools SNP 275015 275015 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C42%2C0:81 scaffold496 SAMTools SNP 275158 275158 134 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.56%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold496 SAMTools SNP 276879 276879 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.47%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C200:99 scaffold496 SAMTools SNP 277761 277761 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C245:99 scaffold496 SAMTools SNP 277808 277808 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold496 SAMTools SNP 277817 277817 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold496 SAMTools SNP 277854 277854 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold496 SAMTools SNP 278439 278439 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 279387 279387 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold496 SAMTools SNP 279408 279408 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold496 SAMTools SNP 279564 279564 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold496 SAMTools SNP 279572 279572 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold496 SAMTools SNP 279635 279635 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold496 SAMTools SNP 279991 279991 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold496 SAMTools SNP 280322 280322 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.54%2C0.19%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold496 SAMTools SNP 280325 280325 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.9%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C24:28 scaffold496 SAMTools SNP 280442 280442 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.6%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold496 SAMTools SNP 280445 280445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.6%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold496 SAMTools SNP 280600 280600 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 280619 280619 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold496 SAMTools SNP 280621 280621 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C13%2C3%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold496 SAMTools SNP 280927 280927 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold496 SAMTools SNP 281585 281585 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold496 SAMTools SNP 281591 281591 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold496 SAMTools SNP 281645 281645 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold496 SAMTools SNP 281656 281656 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold496 SAMTools SNP 282209 282209 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold496 SAMTools SNP 282221 282221 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C112:99 scaffold496 SAMTools SNP 282446 282446 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold496 SAMTools SNP 282767 282767 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold496 SAMTools SNP 282842 282842 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 283117 283117 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 285076 285076 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold496 SAMTools SNP 293070 293070 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C62%2C11%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 293257 293257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C63%2C1%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-05%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 309409 309409 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C296%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 309442 309442 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C18%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold496 SAMTools SNP 309454 309454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C38%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold496 SAMTools SNP 309843 309843 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C341%2C59%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 309888 309888 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C100%2C16%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 311166 311166 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C187%2C0%2C184%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.079%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 311593 311593 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.19%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 312045 312045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold496 SAMTools SNP 312111 312111 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.11%2C6.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold496 SAMTools SNP 312156 312156 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 313924 313924 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 313971 313971 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.15%2C0.013%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold496 SAMTools SNP 313972 313972 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.64%2C0.29%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold496 SAMTools SNP 314011 314011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C30%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.54%2C1.2e-06%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold496 SAMTools SNP 314044 314044 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C1%2C15%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C4.6e-20%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold496 SAMTools SNP 314101 314101 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold496 SAMTools SNP 315379 315379 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 316042 316042 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold496 SAMTools SNP 319010 319010 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.4e-11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C156:43 scaffold496 SAMTools SNP 319879 319879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.22%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold496 SAMTools SNP 320045 320045 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C124:34 scaffold496 SAMTools SNP 320554 320554 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C30%2C0:57 scaffold496 SAMTools SNP 320878 320878 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C3.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold496 SAMTools SNP 321013 321013 31.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold496 SAMTools SNP 321231 321231 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.18%2C0.0098%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C234:28 scaffold496 SAMTools SNP 321852 321852 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.35%2C9.5e-16%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold496 SAMTools SNP 321963 321963 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C8%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.64%2C3.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold496 SAMTools SNP 322498 322498 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C1.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold496 SAMTools SNP 323065 323065 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C142:39 scaffold496 SAMTools SNP 323550 323550 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C168:34 scaffold496 SAMTools SNP 324062 324062 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.2e-05%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C156:37 scaffold496 SAMTools SNP 324648 324648 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 326834 326834 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C8.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold496 SAMTools SNP 351833 351833 37.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold496 SAMTools SNP 352179 352179 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.01%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C188:64 scaffold496 SAMTools SNP 352229 352229 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.36%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold496 SAMTools SNP 352649 352649 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold496 SAMTools SNP 352699 352699 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold496 SAMTools SNP 352742 352742 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold496 SAMTools SNP 353632 353632 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold496 SAMTools SNP 353638 353638 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C112:99 scaffold496 SAMTools SNP 353655 353655 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold496 SAMTools SNP 353664 353664 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold496 SAMTools SNP 353676 353676 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.0098%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold496 SAMTools SNP 354144 354144 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C0.083%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold496 SAMTools SNP 354256 354256 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold496 SAMTools SNP 359938 359938 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C104:41 scaffold496 SAMTools SNP 361387 361387 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold496 SAMTools SNP 363325 363325 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 364150 364150 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold496 SAMTools SNP 366495 366495 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold496 SAMTools SNP 366672 366672 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 366679 366679 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 391710 391710 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold496 SAMTools SNP 391760 391760 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 416417 416417 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold496 SAMTools SNP 459942 459942 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold496 SAMTools SNP 460759 460759 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 460765 460765 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 462019 462019 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 466266 466266 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 469558 469558 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold496 SAMTools SNP 470591 470591 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold496 SAMTools SNP 471347 471347 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.13%2C0.24%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C182:99 scaffold496 SAMTools SNP 471369 471369 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D37.8%3BPV4%3D1%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C66:68 scaffold496 SAMTools SNP 471454 471454 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold496 SAMTools SNP 472216 472216 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold496 SAMTools SNP 474798 474798 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold496 SAMTools SNP 474849 474849 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 474850 474850 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 474901 474901 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.6%2C0.001%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold496 SAMTools SNP 475459 475459 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold496 SAMTools SNP 477134 477134 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.036%2C8.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C177:59 scaffold496 SAMTools SNP 477139 477139 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold496 SAMTools SNP 477169 477169 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold496 SAMTools SNP 477783 477783 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 480665 480665 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.53%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold496 SAMTools SNP 482285 482285 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold496 SAMTools SNP 482706 482706 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C205:99 scaffold496 SAMTools SNP 482721 482721 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.19%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold496 SAMTools SNP 483286 483286 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold496 SAMTools SNP 484230 484230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold496 SAMTools SNP 484320 484320 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold496 SAMTools SNP 484329 484329 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold496 SAMTools SNP 484854 484854 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold496 SAMTools SNP 485064 485064 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold496 SAMTools SNP 504076 504076 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold496 SAMTools SNP 504248 504248 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold496 SAMTools SNP 504266 504266 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 508925 508925 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 508944 508944 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 511857 511857 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 518455 518455 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold496 SAMTools SNP 520689 520689 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold496 SAMTools SNP 526476 526476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold496 SAMTools SNP 527769 527769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 527829 527829 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold496 SAMTools SNP 528393 528393 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 531330 531330 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold496 SAMTools SNP 531385 531385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold496 SAMTools SNP 531423 531423 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0029%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold496 SAMTools SNP 531916 531916 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold496 SAMTools SNP 563479 563479 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C2%2C6%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold496 SAMTools SNP 564610 564610 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C1%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold496 SAMTools SNP 564632 564632 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold496 SAMTools SNP 565418 565418 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold496 SAMTools SNP 565850 565850 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C41%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold496 SAMTools SNP 566937 566937 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold496 SAMTools SNP 567311 567311 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C4.3e-28%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold496 SAMTools SNP 567371 567371 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.47%2C7.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold496 SAMTools SNP 568724 568724 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 569211 569211 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold496 SAMTools SNP 574443 574443 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 574447 574447 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 574503 574503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold496 SAMTools SNP 575405 575405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 575430 575430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C74%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold496 SAMTools SNP 575478 575478 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold496 SAMTools SNP 601020 601020 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold496 SAMTools SNP 606308 606308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 606901 606901 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C51%2C0:89 scaffold496 SAMTools SNP 607347 607347 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold496 SAMTools SNP 608030 608030 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold496 SAMTools SNP 608226 608226 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold496 SAMTools SNP 612651 612651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C33%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold496 SAMTools SNP 613041 613041 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold496 SAMTools SNP 613045 613045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C4%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold496 SAMTools SNP 613749 613749 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 630522 630522 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 637356 637356 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold496 SAMTools SNP 646689 646689 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold496 SAMTools SNP 646752 646752 45.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold496 SAMTools SNP 647298 647298 63.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold496 SAMTools SNP 647314 647314 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C33%2C0:63 scaffold496 SAMTools SNP 648993 648993 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold496 SAMTools SNP 650097 650097 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold496 SAMTools SNP 650124 650124 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold496 SAMTools SNP 650190 650190 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 650214 650214 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 652156 652156 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold496 SAMTools SNP 652210 652210 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 662978 662978 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold496 SAMTools SNP 662997 662997 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold496 SAMTools SNP 663024 663024 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold496 SAMTools SNP 665180 665180 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold496 SAMTools SNP 665507 665507 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C24%2C0:45 scaffold496 SAMTools SNP 666470 666470 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C39%2C0:75 scaffold496 SAMTools SNP 666704 666704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold496 SAMTools SNP 667928 667928 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold496 SAMTools SNP 669484 669484 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold496 SAMTools SNP 696679 696679 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold496 SAMTools SNP 697800 697800 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold496 SAMTools SNP 698953 698953 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C117%2C0:99 scaffold496 SAMTools SNP 702408 702408 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C9%2C0:16 scaffold496 SAMTools SNP 711641 711641 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C39%2C0:75 scaffold496 SAMTools SNP 711753 711753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold496 SAMTools SNP 712294 712294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold496 SAMTools SNP 713002 713002 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold496 SAMTools SNP 713382 713382 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold496 SAMTools SNP 713707 713707 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C3%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold496 SAMTools SNP 718010 718010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold496 SAMTools SNP 722030 722030 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold496 SAMTools SNP 722922 722922 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold496 SAMTools SNP 722946 722946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold496 SAMTools SNP 724065 724065 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C24:27 scaffold496 SAMTools SNP 724098 724098 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold496 SAMTools SNP 724291 724291 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 724299 724299 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold496 SAMTools SNP 724567 724567 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold498 SAMTools SNP 64549 64549 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold498 SAMTools SNP 64785 64785 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold498 SAMTools SNP 65138 65138 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold498 SAMTools SNP 112156 112156 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold498 SAMTools SNP 113177 113177 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold498 SAMTools SNP 134810 134810 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C6%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold498 SAMTools SNP 135741 135741 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C4.4e-30%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C217:99 scaffold498 SAMTools SNP 136112 136112 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.039%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold498 SAMTools SNP 136396 136396 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C51%2C0:99 scaffold498 SAMTools SNP 137886 137886 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 138206 138206 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 150733 150733 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold498 SAMTools SNP 150870 150870 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold498 SAMTools SNP 152062 152062 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 177309 177309 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold498 SAMTools SNP 178281 178281 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 179067 179067 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 179193 179193 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 185109 185109 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C114:36 scaffold498 SAMTools SNP 185806 185806 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D44%3BFQ%3D6.99%3BPV4%3D1%2C0.11%2C0.0092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C176:33 scaffold498 SAMTools SNP 185824 185824 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold498 SAMTools SNP 185833 185833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold498 SAMTools SNP 187193 187193 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D49%3BFQ%3D27%3BPV4%3D1%2C0.0042%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C230:57 scaffold498 SAMTools SNP 187693 187693 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold498 SAMTools SNP 193664 193664 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C247%2C0:99 scaffold498 SAMTools SNP 194764 194764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold498 SAMTools SNP 196244 196244 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 196512 196512 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold498 SAMTools SNP 198619 198619 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 205589 205589 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold498 SAMTools SNP 205678 205678 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C81%2C0:99 scaffold498 SAMTools SNP 205718 205718 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.28%2C4.4e-13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold498 SAMTools SNP 206643 206643 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold498 SAMTools SNP 211360 211360 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold498 SAMTools SNP 211639 211639 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.13%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C141:99 scaffold498 SAMTools SNP 211674 211674 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold498 SAMTools SNP 211696 211696 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold498 SAMTools SNP 212113 212113 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold498 SAMTools SNP 212150 212150 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold498 SAMTools SNP 212923 212923 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold498 SAMTools SNP 213066 213066 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.42%2C0.2%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold498 SAMTools SNP 213436 213436 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C184:99 scaffold498 SAMTools SNP 213439 213439 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C228:99 scaffold498 SAMTools SNP 213454 213454 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C223:99 scaffold498 SAMTools SNP 213487 213487 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 213592 213592 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold498 SAMTools SNP 213839 213839 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold498 SAMTools SNP 214391 214391 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C8.8e-22%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C101:63 scaffold498 SAMTools SNP 215723 215723 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.33%2C9.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C175:61 scaffold498 SAMTools SNP 217955 217955 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 217967 217967 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 218200 218200 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C0.053%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold498 SAMTools SNP 218489 218489 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 220136 220136 56.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold498 SAMTools SNP 226535 226535 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold498 SAMTools SNP 226562 226562 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold498 SAMTools SNP 228414 228414 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.019%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold498 SAMTools SNP 228783 228783 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C19%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.28%2C2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold498 SAMTools SNP 228882 228882 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C54%2C0:99 scaffold498 SAMTools SNP 228907 228907 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.62%2C1e-06%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold498 SAMTools SNP 246687 246687 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 247411 247411 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C12%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold498 SAMTools SNP 248431 248431 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold498 SAMTools SNP 248479 248479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold498 SAMTools SNP 251217 251217 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold498 SAMTools SNP 251246 251246 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold498 SAMTools SNP 251699 251699 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 252327 252327 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold498 SAMTools SNP 252378 252378 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.085%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold498 SAMTools SNP 252929 252929 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C9%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.027%2C0.0019%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold498 SAMTools SNP 253377 253377 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.028%2C7e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold498 SAMTools SNP 253386 253386 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold498 SAMTools SNP 256883 256883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C15%2C15%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.42%2C0.13%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold498 SAMTools SNP 257088 257088 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C119:59 scaffold498 SAMTools SNP 257369 257369 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold498 SAMTools SNP 257387 257387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold498 SAMTools SNP 257501 257501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C10%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold498 SAMTools SNP 257867 257867 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C0%2C14%3BMQ%3D50%3BFQ%3D98%3BPV4%3D6.3e-05%2C3.6e-08%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold498 SAMTools SNP 259060 259060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C7%2C55%3BMQ%3D50%3BFQ%3D-123%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold498 SAMTools SNP 259098 259098 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.48%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold498 SAMTools SNP 260969 260969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold498 SAMTools SNP 260972 260972 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold498 SAMTools SNP 261656 261656 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0066%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold498 SAMTools SNP 261680 261680 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold498 SAMTools SNP 261689 261689 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.054%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold498 SAMTools SNP 262509 262509 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0011%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 262539 262539 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold498 SAMTools SNP 263021 263021 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold498 SAMTools SNP 263078 263078 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold498 SAMTools SNP 264216 264216 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold498 SAMTools SNP 264713 264713 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 264932 264932 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold498 SAMTools SNP 264941 264941 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold498 SAMTools SNP 265517 265517 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C253:99 scaffold498 SAMTools SNP 265696 265696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold498 SAMTools SNP 266448 266448 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C5%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold498 SAMTools SNP 266742 266742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 266859 266859 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 267104 267104 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.44%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 267404 267404 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 267425 267425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 267479 267479 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.61%2C0.16%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold498 SAMTools SNP 274728 274728 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C175%2C0:99 scaffold498 SAMTools SNP 275006 275006 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C15%3BMQ%3D50%3BFQ%3D60.8%3BPV4%3D0.54%2C2.4e-18%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C88:91 scaffold498 SAMTools SNP 275544 275544 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C140:71 scaffold498 SAMTools SNP 279330 279330 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold498 SAMTools SNP 279347 279347 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 279594 279594 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold498 SAMTools SNP 286126 286126 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 286219 286219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold498 SAMTools SNP 286379 286379 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold498 SAMTools SNP 286381 286381 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold498 SAMTools SNP 286403 286403 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold498 SAMTools SNP 289710 289710 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 290230 290230 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold498 SAMTools SNP 290251 290251 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold498 SAMTools SNP 294444 294444 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 296270 296270 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold498 SAMTools SNP 296901 296901 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold498 SAMTools SNP 299747 299747 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold498 SAMTools SNP 300097 300097 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 300915 300915 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold498 SAMTools SNP 301678 301678 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C18%2C12%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.031%2C8.5e-11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold498 SAMTools SNP 301901 301901 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C20%2C27%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 305918 305918 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C3%2C8%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.17%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold498 SAMTools SNP 306046 306046 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C63%2C63%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.0001%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 306391 306391 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C107%2C73%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.015%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 306407 306407 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C110%2C21%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 306527 306527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold498 SAMTools SNP 307017 307017 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold498 SAMTools SNP 307050 307050 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold498 SAMTools SNP 307092 307092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold498 SAMTools SNP 307350 307350 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 307355 307355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 308295 308295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold498 SAMTools SNP 308304 308304 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold498 SAMTools SNP 308305 308305 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold498 SAMTools SNP 308343 308343 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold498 SAMTools SNP 308349 308349 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold498 SAMTools SNP 308370 308370 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold498 SAMTools SNP 308969 308969 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold498 SAMTools SNP 308998 308998 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold498 SAMTools SNP 309139 309139 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C169%2C0:99 scaffold498 SAMTools SNP 309663 309663 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold498 SAMTools SNP 309683 309683 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.012%2C2e-10%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C176:62 scaffold498 SAMTools SNP 309902 309902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold498 SAMTools SNP 309945 309945 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C223:99 scaffold498 SAMTools SNP 310023 310023 129 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C69%2C0:99 scaffold498 SAMTools SNP 310047 310047 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C5%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.67%2C0.0046%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold498 SAMTools SNP 310114 310114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.00033%2C0.14%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold498 SAMTools SNP 310277 310277 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D5.1e-06%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold498 SAMTools SNP 310324 310324 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold498 SAMTools SNP 312538 312538 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold498 SAMTools SNP 312989 312989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold498 SAMTools SNP 313118 313118 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold498 SAMTools SNP 313130 313130 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold498 SAMTools SNP 313506 313506 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold498 SAMTools SNP 313542 313542 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.11%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold498 SAMTools SNP 313599 313599 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold498 SAMTools SNP 313911 313911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold498 SAMTools SNP 313950 313950 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold498 SAMTools SNP 314112 314112 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold498 SAMTools SNP 314455 314455 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold498 SAMTools SNP 314932 314932 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold498 SAMTools SNP 315310 315310 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold498 SAMTools SNP 315340 315340 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold498 SAMTools SNP 315427 315427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.42%2C0.33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold498 SAMTools SNP 315711 315711 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold498 SAMTools SNP 315715 315715 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold498 SAMTools SNP 316227 316227 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold498 SAMTools SNP 316565 316565 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C225:99 scaffold498 SAMTools SNP 316799 316799 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C225:99 scaffold499 SAMTools SNP 9110 9110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold499 SAMTools SNP 9142 9142 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold499 SAMTools SNP 10005 10005 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold499 SAMTools SNP 10275 10275 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold499 SAMTools SNP 10290 10290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 22723 22723 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold499 SAMTools SNP 22937 22937 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.084%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold499 SAMTools SNP 22946 22946 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold499 SAMTools SNP 23340 23340 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.1%2C0.088%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C240:99 scaffold499 SAMTools SNP 23412 23412 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold499 SAMTools SNP 27617 27617 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 27737 27737 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C7%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 27749 27749 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C5%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 29322 29322 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.53%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold499 SAMTools SNP 29636 29636 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold499 SAMTools SNP 29674 29674 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 29678 29678 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 30144 30144 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0018%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold499 SAMTools SNP 30163 30163 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold499 SAMTools SNP 30512 30512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C20%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold499 SAMTools SNP 30568 30568 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C34%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold499 SAMTools SNP 31362 31362 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 31538 31538 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.017%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold499 SAMTools SNP 31546 31546 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.11%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold499 SAMTools SNP 31693 31693 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0096%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.066%2C0.0083%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold499 SAMTools SNP 32824 32824 11.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold499 SAMTools SNP 34761 34761 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C4%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 34787 34787 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C0%2C12%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.028%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold499 SAMTools SNP 34839 34839 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C22%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C5.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 36715 36715 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.25%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold499 SAMTools SNP 37462 37462 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold499 SAMTools SNP 37471 37471 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold499 SAMTools SNP 37579 37579 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold499 SAMTools SNP 38084 38084 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold499 SAMTools SNP 38506 38506 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 38972 38972 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C16%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0081%2C1%2C1%2C5.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold499 SAMTools SNP 39032 39032 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold499 SAMTools SNP 39300 39300 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold499 SAMTools SNP 39333 39333 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C28%2C4%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.18%2C7.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold499 SAMTools SNP 39363 39363 81.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold499 SAMTools SNP 39402 39402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold499 SAMTools SNP 39915 39915 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold499 SAMTools SNP 40249 40249 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold499 SAMTools SNP 40378 40378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C7%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 40515 40515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 40551 40551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold499 SAMTools SNP 40887 40887 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.31%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C225:99 scaffold499 SAMTools SNP 41276 41276 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold499 SAMTools SNP 41369 41369 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C78%2C0:99 scaffold499 SAMTools SNP 41869 41869 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0035%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold499 SAMTools SNP 41905 41905 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C3.3e-12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold499 SAMTools SNP 41926 41926 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C7.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold499 SAMTools SNP 41971 41971 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C210:99 scaffold499 SAMTools SNP 42389 42389 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold499 SAMTools SNP 42593 42593 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C42%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold499 SAMTools SNP 42863 42863 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C3%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.71%2C4.3e-25%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold499 SAMTools SNP 42877 42877 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C34%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C0.098%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold499 SAMTools SNP 43536 43536 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold499 SAMTools SNP 44719 44719 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C8%2C33%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.79%2C7.1e-79%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold499 SAMTools SNP 44860 44860 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold499 SAMTools SNP 58247 58247 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C86%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.2e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold499 SAMTools SNP 68895 68895 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold499 SAMTools SNP 88908 88908 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 88951 88951 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold499 SAMTools SNP 89866 89866 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold499 SAMTools SNP 93303 93303 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 94375 94375 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold499 SAMTools SNP 104215 104215 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold499 SAMTools SNP 104618 104618 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 104802 104802 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 104822 104822 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.028%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold499 SAMTools SNP 107031 107031 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D87%3BPV4%3D4.7e-05%2C8.3e-09%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold499 SAMTools SNP 107107 107107 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold499 SAMTools SNP 107305 107305 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.35%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold499 SAMTools SNP 110848 110848 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C39%2C0:75 scaffold499 SAMTools SNP 124161 124161 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold499 SAMTools SNP 124216 124216 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold499 SAMTools SNP 124240 124240 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold499 SAMTools SNP 126526 126526 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold499 SAMTools SNP 126559 126559 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 126593 126593 53.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C17:20 scaffold499 SAMTools SNP 129572 129572 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold499 SAMTools SNP 131308 131308 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C77:80 scaffold499 SAMTools SNP 131320 131320 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0148%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold499 SAMTools SNP 131359 131359 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 189357 189357 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 189735 189735 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold499 SAMTools SNP 189786 189786 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold499 SAMTools SNP 192437 192437 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 228246 228246 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold499 SAMTools SNP 230323 230323 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold499 SAMTools SNP 230468 230468 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 232463 232463 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D24%3BFQ%3D-31%3BPV4%3D0.028%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C4%2C0:7 scaffold499 SAMTools SNP 232756 232756 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold499 SAMTools SNP 233068 233068 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 233110 233110 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 235324 235324 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 235614 235614 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold499 SAMTools SNP 235680 235680 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold499 SAMTools SNP 322107 322107 89.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C12%2C0:21 scaffold499 SAMTools SNP 323659 323659 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold499 SAMTools SNP 323734 323734 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold499 SAMTools SNP 323760 323760 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold499 SAMTools SNP 323779 323779 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold499 SAMTools SNP 324093 324093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold499 SAMTools SNP 324405 324405 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 348993 348993 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 349466 349466 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 350622 350622 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 350654 350654 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold499 SAMTools SNP 351649 351649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold499 SAMTools SNP 351676 351676 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold499 SAMTools SNP 352145 352145 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold499 SAMTools SNP 355294 355294 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 355492 355492 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 355909 355909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold499 SAMTools SNP 355924 355924 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.012%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C87:90 scaffold499 SAMTools SNP 360640 360640 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold499 SAMTools SNP 360645 360645 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 360963 360963 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold499 SAMTools SNP 365927 365927 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold499 SAMTools SNP 365947 365947 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0076%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C160:53 scaffold499 SAMTools SNP 366720 366720 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0022%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold499 SAMTools SNP 366727 366727 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C0.011%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold499 SAMTools SNP 366786 366786 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold499 SAMTools SNP 367389 367389 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 370275 370275 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 370289 370289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 372395 372395 4.85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C1%2C0:4 scaffold499 SAMTools SNP 372427 372427 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold499 SAMTools SNP 373377 373377 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.038%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold499 SAMTools SNP 373401 373401 17.1 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C40%2C37%2C47%2C0%2C44:6 scaffold499 SAMTools SNP 379159 379159 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C237:46 scaffold499 SAMTools SNP 385079 385079 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C73%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C9.4e-65%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C118:60 scaffold499 SAMTools SNP 391348 391348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 391414 391414 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 391993 391993 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold499 SAMTools SNP 392246 392246 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 392784 392784 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 393804 393804 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold499 SAMTools SNP 393840 393840 19.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold499 SAMTools SNP 394821 394821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 395155 395155 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 395864 395864 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C158:98 scaffold499 SAMTools SNP 395905 395905 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold499 SAMTools SNP 396390 396390 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold499 SAMTools SNP 396402 396402 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold499 SAMTools SNP 397484 397484 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 400596 400596 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold499 SAMTools SNP 403526 403526 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold499 SAMTools SNP 403590 403590 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold499 SAMTools SNP 403644 403644 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold499 SAMTools SNP 403681 403681 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold499 SAMTools SNP 403952 403952 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold499 SAMTools SNP 405554 405554 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold499 SAMTools SNP 405983 405983 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold499 SAMTools SNP 405995 405995 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold499 SAMTools SNP 406013 406013 13.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold499 SAMTools SNP 406682 406682 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold499 SAMTools SNP 406686 406686 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold499 SAMTools SNP 406788 406788 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold499 SAMTools SNP 406797 406797 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0099%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold499 SAMTools SNP 409782 409782 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 409821 409821 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 411379 411379 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 412001 412001 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold499 SAMTools SNP 413680 413680 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold499 SAMTools SNP 414409 414409 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold499 SAMTools SNP 419269 419269 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold499 SAMTools SNP 419341 419341 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold499 SAMTools SNP 421959 421959 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold499 SAMTools SNP 422018 422018 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold5 SAMTools SNP 44410 44410 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.042%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C186:42 scaffold5 SAMTools SNP 48908 48908 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 49281 49281 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold5 SAMTools SNP 51729 51729 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold5 SAMTools SNP 51733 51733 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold5 SAMTools SNP 52593 52593 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold5 SAMTools SNP 52617 52617 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold5 SAMTools SNP 54039 54039 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold5 SAMTools SNP 54063 54063 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold5 SAMTools SNP 57893 57893 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 58134 58134 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold5 SAMTools SNP 58143 58143 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold5 SAMTools SNP 59011 59011 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 75438 75438 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 75932 75932 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold5 SAMTools SNP 76112 76112 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold5 SAMTools SNP 77086 77086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold5 SAMTools SNP 77140 77140 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold5 SAMTools SNP 77661 77661 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold5 SAMTools SNP 97066 97066 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold5 SAMTools SNP 97391 97391 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold5 SAMTools SNP 98708 98708 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold5 SAMTools SNP 114559 114559 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold5 SAMTools SNP 125880 125880 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 125952 125952 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold5 SAMTools SNP 162612 162612 46.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold5 SAMTools SNP 162944 162944 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold5 SAMTools SNP 165683 165683 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C36%2C0:69 scaffold5 SAMTools SNP 168370 168370 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C40%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C2.2e-23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold5 SAMTools SNP 168654 168654 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C57%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C199%2C0:99 scaffold5 SAMTools SNP 169290 169290 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold5 SAMTools SNP 169358 169358 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold5 SAMTools SNP 181086 181086 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold5 SAMTools SNP 181844 181844 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold5 SAMTools SNP 181850 181850 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold5 SAMTools SNP 216163 216163 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold5 SAMTools SNP 217315 217315 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0021%2C9.5e-09%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold5 SAMTools SNP 219418 219418 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C100%2C1:99 scaffold5 SAMTools SNP 223303 223303 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold5 SAMTools SNP 223330 223330 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold5 SAMTools SNP 224171 224171 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold5 SAMTools SNP 224199 224199 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C0.26%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold5 SAMTools SNP 224552 224552 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold5 SAMTools SNP 242817 242817 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold5 SAMTools SNP 242862 242862 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold5 SAMTools SNP 245753 245753 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold5 SAMTools SNP 246068 246068 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C12%2C77%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold5 SAMTools SNP 246145 246145 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C25%2C18%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.071%2C4.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold5 SAMTools SNP 246275 246275 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C42%2C33%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C2e-78%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold5 SAMTools SNP 257562 257562 8.22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold5 SAMTools SNP 269943 269943 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold5 SAMTools SNP 269967 269967 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold5 SAMTools SNP 276062 276062 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.23%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold5 SAMTools SNP 277623 277623 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold5 SAMTools SNP 278015 278015 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold5 SAMTools SNP 278403 278403 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold5 SAMTools SNP 278508 278508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C16%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.08%2C0.061%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold5 SAMTools SNP 281277 281277 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.56%2C0.036%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C216:99 scaffold5 SAMTools SNP 281278 281278 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.56%2C0.0086%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C216:99 scaffold5 SAMTools SNP 284712 284712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold5 SAMTools SNP 284765 284765 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C230:44 scaffold5 SAMTools SNP 284774 284774 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold5 SAMTools SNP 286104 286104 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.04%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold5 SAMTools SNP 286992 286992 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold5 SAMTools SNP 287037 287037 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold5 SAMTools SNP 287452 287452 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold5 SAMTools SNP 287554 287554 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold5 SAMTools SNP 287869 287869 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold5 SAMTools SNP 288189 288189 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.041%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold5 SAMTools SNP 290979 290979 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold50 SAMTools SNP 815 815 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold50 SAMTools SNP 3814 3814 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold50 SAMTools SNP 4526 4526 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold50 SAMTools SNP 4898 4898 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold50 SAMTools SNP 5222 5222 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D43%3BFQ%3D21%3BPV4%3D0.2%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold50 SAMTools SNP 5267 5267 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D40%3BFQ%3D18.1%3BPV4%3D0.17%2C0.3%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold50 SAMTools SNP 16325 16325 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0141%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold50 SAMTools SNP 16627 16627 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C18%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C148%2C0:99 scaffold50 SAMTools SNP 16753 16753 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C29%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold50 SAMTools SNP 16894 16894 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold50 SAMTools SNP 17176 17176 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C51%2C0:99 scaffold50 SAMTools SNP 17628 17628 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C8%2C30%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.4%2C8.1e-22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold50 SAMTools SNP 18207 18207 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C8.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C250:52 scaffold50 SAMTools SNP 18387 18387 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C7%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold50 SAMTools SNP 19102 19102 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold50 SAMTools SNP 19325 19325 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C72%2C0:99 scaffold50 SAMTools SNP 19631 19631 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C0:57 scaffold50 SAMTools SNP 20889 20889 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0:45 scaffold50 SAMTools SNP 21133 21133 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold50 SAMTools SNP 21524 21524 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold50 SAMTools SNP 22654 22654 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C42%2C0:81 scaffold50 SAMTools SNP 22666 22666 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C45%2C0:87 scaffold50 SAMTools SNP 22861 22861 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C87%2C0:99 scaffold50 SAMTools SNP 22915 22915 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C6%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.019%2C4.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold50 SAMTools SNP 23077 23077 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 23273 23273 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 23781 23781 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold50 SAMTools SNP 24255 24255 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold50 SAMTools SNP 24279 24279 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C239:99 scaffold50 SAMTools SNP 49830 49830 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.16%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold50 SAMTools SNP 51775 51775 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C30%2C0:56 scaffold50 SAMTools SNP 53097 53097 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold50 SAMTools SNP 53131 53131 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold50 SAMTools SNP 53152 53152 169 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold50 SAMTools SNP 54106 54106 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold50 SAMTools SNP 54139 54139 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.41%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold50 SAMTools SNP 54508 54508 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold50 SAMTools SNP 57035 57035 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.1e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C202:31 scaffold50 SAMTools SNP 57053 57053 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 57074 57074 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 57822 57822 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold50 SAMTools SNP 57860 57860 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold50 SAMTools SNP 57995 57995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold50 SAMTools SNP 58352 58352 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.041%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C253:99 scaffold50 SAMTools SNP 58388 58388 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold50 SAMTools SNP 58460 58460 157 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C65:99 scaffold50 SAMTools SNP 61190 61190 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold50 SAMTools SNP 61677 61677 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold50 SAMTools SNP 61687 61687 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold50 SAMTools SNP 61733 61733 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C147:71 scaffold50 SAMTools SNP 62776 62776 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold50 SAMTools SNP 63201 63201 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.42%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C235:99 scaffold50 SAMTools SNP 63225 63225 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 63928 63928 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 63991 63991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold50 SAMTools SNP 64075 64075 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66.9%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C110:97 scaffold50 SAMTools SNP 64377 64377 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold50 SAMTools SNP 64434 64434 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold50 SAMTools SNP 64440 64440 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold50 SAMTools SNP 66284 66284 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold50 SAMTools SNP 66383 66383 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold50 SAMTools SNP 66840 66840 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold50 SAMTools SNP 66962 66962 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.048%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold50 SAMTools SNP 67255 67255 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold50 SAMTools SNP 68336 68336 72.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C15%2C0:27 scaffold50 SAMTools SNP 68858 68858 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.3%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold50 SAMTools SNP 68873 68873 23.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold50 SAMTools SNP 69958 69958 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold50 SAMTools SNP 70036 70036 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold50 SAMTools SNP 70649 70649 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold50 SAMTools SNP 70718 70718 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold50 SAMTools SNP 70766 70766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold50 SAMTools SNP 76292 76292 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C0.0015%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C170:37 scaffold50 SAMTools SNP 77210 77210 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold50 SAMTools SNP 77215 77215 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold50 SAMTools SNP 77240 77240 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold50 SAMTools SNP 78562 78562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold50 SAMTools SNP 78568 78568 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold50 SAMTools SNP 78616 78616 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold50 SAMTools SNP 79153 79153 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 79243 79243 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.091%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C187:99 scaffold50 SAMTools SNP 79722 79722 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C234:99 scaffold50 SAMTools SNP 79735 79735 184 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C234:99 scaffold50 SAMTools SNP 79779 79779 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.28%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold50 SAMTools SNP 80234 80234 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold50 SAMTools SNP 80289 80289 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold50 SAMTools SNP 80309 80309 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold50 SAMTools SNP 82308 82308 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold50 SAMTools SNP 82326 82326 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0025%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold50 SAMTools SNP 82515 82515 33.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold50 SAMTools SNP 82575 82575 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold50 SAMTools SNP 83447 83447 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold50 SAMTools SNP 88798 88798 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold50 SAMTools SNP 89100 89100 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold50 SAMTools SNP 89527 89527 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold50 SAMTools SNP 197361 197361 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold500 SAMTools SNP 1954 1954 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 3725 3725 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold500 SAMTools SNP 28757 28757 36.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold500 SAMTools SNP 29748 29748 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C63%2C6%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 31856 31856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 41522 41522 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C46%2C7%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C3.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 42534 42534 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C32%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C3.6e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold500 SAMTools SNP 42786 42786 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C200:99 scaffold500 SAMTools SNP 42936 42936 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold500 SAMTools SNP 43233 43233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold500 SAMTools SNP 43250 43250 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.25%2C8.3e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold500 SAMTools SNP 43520 43520 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold500 SAMTools SNP 43590 43590 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C196:31 scaffold500 SAMTools SNP 43731 43731 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold500 SAMTools SNP 44207 44207 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold500 SAMTools SNP 44584 44584 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold500 SAMTools SNP 44957 44957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 44965 44965 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 44966 44966 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 45107 45107 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 46367 46367 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.055%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 46427 46427 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D81.3%3BPV4%3D1%2C0.028%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C110:99 scaffold500 SAMTools SNP 46504 46504 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold500 SAMTools SNP 51039 51039 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D669%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C449%2C116%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C6.3e-51%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C255%2C0:99 scaffold500 SAMTools SNP 61795 61795 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold500 SAMTools SNP 62719 62719 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 71618 71618 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold500 SAMTools SNP 71653 71653 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C4%2C0%3BMQ%3D49%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold500 SAMTools SNP 74437 74437 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C39%2C13%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0032%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 74671 74671 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C11%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.19%2C2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold500 SAMTools SNP 74784 74784 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold500 SAMTools SNP 75149 75149 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold500 SAMTools SNP 75502 75502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold500 SAMTools SNP 75622 75622 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C57%2C9%3BMQ%3D50%3BFQ%3D-180%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C153%2C0:99 scaffold500 SAMTools SNP 75802 75802 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold500 SAMTools SNP 76463 76463 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C12%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 76480 76480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 76833 76833 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.0071%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold500 SAMTools SNP 76834 76834 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold500 SAMTools SNP 77212 77212 166 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold500 SAMTools SNP 78076 78076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C29%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 87369 87369 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold500 SAMTools SNP 88137 88137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold500 SAMTools SNP 88179 88179 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C39%2C0:75 scaffold500 SAMTools SNP 88578 88578 87.3 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C47%2C32%2C113%2C0%2C110:27 scaffold500 SAMTools SNP 89079 89079 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold500 SAMTools SNP 89664 89664 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold500 SAMTools SNP 89679 89679 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold500 SAMTools SNP 90987 90987 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 91008 91008 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 93337 93337 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold500 SAMTools SNP 94007 94007 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold500 SAMTools SNP 94019 94019 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold500 SAMTools SNP 94924 94924 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold500 SAMTools SNP 94949 94949 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold500 SAMTools SNP 94981 94981 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold500 SAMTools SNP 95353 95353 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold500 SAMTools SNP 95398 95398 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C229:77 scaffold500 SAMTools SNP 95578 95578 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.15%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold500 SAMTools SNP 95593 95593 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold500 SAMTools SNP 95710 95710 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold500 SAMTools SNP 95752 95752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold500 SAMTools SNP 96416 96416 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 96437 96437 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 106352 106352 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C1%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold500 SAMTools SNP 106548 106548 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C31%2C2%2C9%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.049%2C0.26%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold500 SAMTools SNP 108682 108682 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold500 SAMTools SNP 108796 108796 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C27%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 116255 116255 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C4%2C17%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.76%2C2.4e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold500 SAMTools SNP 116804 116804 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C48%2C10%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.00088%2C1%2C1%2C6.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold500 SAMTools SNP 117613 117613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C45%2C11%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 117991 117991 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold500 SAMTools SNP 119421 119421 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold500 SAMTools SNP 120017 120017 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C20%2C75%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 120430 120430 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C50%2C67%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1.2e-14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 122018 122018 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D643%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C80%2C327%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C0.006%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 122327 122327 118 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C88%2C49%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D9.8e-07%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold500 SAMTools SNP 122472 122472 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D467%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C148%2C55%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 127845 127845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C40%2C155%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 127980 127980 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D659%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C205%2C18%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold500 SAMTools SNP 138331 138331 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C36%2C30%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1.1e-09%2C7.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold500 SAMTools SNP 138371 138371 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C0.00032%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold500 SAMTools SNP 148422 148422 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C151:68 scaffold500 SAMTools SNP 148426 148426 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.02%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C149:64 scaffold500 SAMTools SNP 155781 155781 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold500 SAMTools SNP 168475 168475 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold500 SAMTools SNP 173146 173146 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C235:99 scaffold500 SAMTools SNP 173313 173313 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold500 SAMTools SNP 174027 174027 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold500 SAMTools SNP 174203 174203 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold500 SAMTools SNP 174629 174629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 176507 176507 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold500 SAMTools SNP 179766 179766 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold500 SAMTools SNP 179787 179787 48.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold500 SAMTools SNP 179827 179827 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold500 SAMTools SNP 179856 179856 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D45.9%3BPV4%3D1%2C0.11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C77:76 scaffold500 SAMTools SNP 180420 180420 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C68:42 scaffold500 SAMTools SNP 204259 204259 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold500 SAMTools SNP 215655 215655 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold501 SAMTools SNP 46092 46092 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 46639 46639 16.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold501 SAMTools SNP 118589 118589 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold501 SAMTools SNP 120286 120286 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C93%2C0:99 scaffold501 SAMTools SNP 120656 120656 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C1%2C11%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0015%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold501 SAMTools SNP 120743 120743 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C3%2C27%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.35%2C2.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold501 SAMTools SNP 121102 121102 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 121104 121104 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 121837 121837 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.49%2C1%2C2.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold501 SAMTools SNP 121862 121862 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.51%2C0.081%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold501 SAMTools SNP 123997 123997 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold501 SAMTools SNP 124006 124006 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.044%2C1%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold501 SAMTools SNP 124015 124015 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold501 SAMTools SNP 124087 124087 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold501 SAMTools SNP 124330 124330 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold501 SAMTools SNP 124402 124402 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold501 SAMTools SNP 124877 124877 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 124883 124883 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 125081 125081 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold501 SAMTools SNP 125441 125441 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold501 SAMTools SNP 125804 125804 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold501 SAMTools SNP 125813 125813 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 126168 126168 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold501 SAMTools SNP 126607 126607 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 126643 126643 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 126685 126685 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold501 SAMTools SNP 127069 127069 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold501 SAMTools SNP 127092 127092 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold501 SAMTools SNP 128544 128544 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C7.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C251:99 scaffold501 SAMTools SNP 128607 128607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold501 SAMTools SNP 128980 128980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C12%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold501 SAMTools SNP 129031 129031 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C19%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold501 SAMTools SNP 129405 129405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 129432 129432 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 129489 129489 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 129531 129531 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 131264 131264 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold501 SAMTools SNP 148266 148266 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C30%2C0:57 scaffold501 SAMTools SNP 148341 148341 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 148362 148362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold501 SAMTools SNP 148813 148813 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold501 SAMTools SNP 148885 148885 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C18%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold501 SAMTools SNP 149630 149630 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C24%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C221:99 scaffold501 SAMTools SNP 149987 149987 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C236:99 scaffold501 SAMTools SNP 149996 149996 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.16%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C199:99 scaffold501 SAMTools SNP 150029 150029 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold501 SAMTools SNP 150035 150035 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.093%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C190:99 scaffold501 SAMTools SNP 153943 153943 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 153961 153961 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 154230 154230 60.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold501 SAMTools SNP 154248 154248 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.29%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold501 SAMTools SNP 154257 154257 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold501 SAMTools SNP 154519 154519 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold501 SAMTools SNP 154954 154954 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold501 SAMTools SNP 155190 155190 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold501 SAMTools SNP 155211 155211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 155216 155216 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 155841 155841 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.0091%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C175:61 scaffold501 SAMTools SNP 156770 156770 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D29.5%3BPV4%3D1%2C8.1e-11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C66:59 scaffold501 SAMTools SNP 159173 159173 80.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C18%2C0:33 scaffold501 SAMTools SNP 159280 159280 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C96%2C0:99 scaffold501 SAMTools SNP 159619 159619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C0%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold501 SAMTools SNP 159628 159628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 159637 159637 47.3 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C15%2C73%2C0%2C70:27 scaffold501 SAMTools SNP 160131 160131 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 160136 160136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 160170 160170 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 160832 160832 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C133%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 161268 161268 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold501 SAMTools SNP 161352 161352 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold501 SAMTools SNP 161503 161503 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C17%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D3e-05%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold501 SAMTools SNP 161527 161527 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C30%2C18%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D8.8e-06%2C4.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold501 SAMTools SNP 161581 161581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 161993 161993 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C15%2C0:27 scaffold501 SAMTools SNP 161996 161996 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D31.6%3BPV4%3D1%2C0.025%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C59:62 scaffold501 SAMTools SNP 162119 162119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 163900 163900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C49%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold501 SAMTools SNP 163918 163918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C32%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold501 SAMTools SNP 164013 164013 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold501 SAMTools SNP 164022 164022 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold501 SAMTools SNP 164032 164032 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0028%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold501 SAMTools SNP 168054 168054 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C92%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 168081 168081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 168356 168356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold501 SAMTools SNP 168446 168446 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.19%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold501 SAMTools SNP 168449 168449 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 168845 168845 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C15%2C84%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C7.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 169046 169046 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C87%2C0:99 scaffold501 SAMTools SNP 169119 169119 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold501 SAMTools SNP 169154 169154 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold501 SAMTools SNP 169194 169194 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold501 SAMTools SNP 169903 169903 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold501 SAMTools SNP 169906 169906 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold501 SAMTools SNP 169954 169954 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C22%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold501 SAMTools SNP 169984 169984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C23%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold501 SAMTools SNP 170020 170020 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.047%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold501 SAMTools SNP 170053 170053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold501 SAMTools SNP 170206 170206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 170224 170224 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 170279 170279 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.001%2C2.9e-05%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold501 SAMTools SNP 170296 170296 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.008%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold501 SAMTools SNP 170299 170299 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.027%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold501 SAMTools SNP 170518 170518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C18%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold501 SAMTools SNP 170644 170644 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C75%2C2%2C16%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold501 SAMTools SNP 171621 171621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C7%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold501 SAMTools SNP 171658 171658 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C64%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold501 SAMTools SNP 171984 171984 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C4.8e-06%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold501 SAMTools SNP 171989 171989 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.12%2C1.2e-05%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold501 SAMTools SNP 172387 172387 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C12%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1.6e-06%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold501 SAMTools SNP 172478 172478 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C207:53 scaffold501 SAMTools SNP 172501 172501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C10%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold501 SAMTools SNP 173171 173171 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold501 SAMTools SNP 173207 173207 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold501 SAMTools SNP 173216 173216 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 173228 173228 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold501 SAMTools SNP 173248 173248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold501 SAMTools SNP 174726 174726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C22%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold501 SAMTools SNP 174729 174729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold501 SAMTools SNP 175432 175432 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold501 SAMTools SNP 175913 175913 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold501 SAMTools SNP 175928 175928 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold501 SAMTools SNP 176550 176550 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 176965 176965 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold501 SAMTools SNP 177146 177146 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C13%2C27%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C3.8e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold501 SAMTools SNP 177161 177161 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C25%2C8%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.41%2C1.1e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold501 SAMTools SNP 177221 177221 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C28%2C5%2C27%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.11%2C1.2e-26%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold501 SAMTools SNP 177248 177248 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold501 SAMTools SNP 177508 177508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C158%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 177529 177529 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 177572 177572 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C51%2C0%2C12%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold501 SAMTools SNP 177924 177924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold501 SAMTools SNP 177963 177963 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold501 SAMTools SNP 178116 178116 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 178296 178296 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold501 SAMTools SNP 178326 178326 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 178379 178379 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C239:84 scaffold501 SAMTools SNP 182085 182085 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.00028%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C198:42 scaffold501 SAMTools SNP 182247 182247 37.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold501 SAMTools SNP 185423 185423 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold501 SAMTools SNP 185434 185434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold501 SAMTools SNP 191073 191073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 191220 191220 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold501 SAMTools SNP 200665 200665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 203244 203244 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold501 SAMTools SNP 203261 203261 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold501 SAMTools SNP 203300 203300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 203961 203961 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 203963 203963 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C65%2C0%2C17%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold501 SAMTools SNP 205083 205083 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold501 SAMTools SNP 209138 209138 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C149:99 scaffold501 SAMTools SNP 214296 214296 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold501 SAMTools SNP 218198 218198 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold501 SAMTools SNP 220754 220754 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.053%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold501 SAMTools SNP 221358 221358 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 222781 222781 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 223763 223763 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold501 SAMTools SNP 225960 225960 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold501 SAMTools SNP 226014 226014 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold501 SAMTools SNP 228084 228084 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold501 SAMTools SNP 228439 228439 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 229258 229258 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 229324 229324 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 239135 239135 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold501 SAMTools SNP 248155 248155 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold501 SAMTools SNP 276499 276499 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold501 SAMTools SNP 279313 279313 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold501 SAMTools SNP 279448 279448 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C18%2C0:33 scaffold501 SAMTools SNP 279650 279650 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C75%2C0:99 scaffold501 SAMTools SNP 280229 280229 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold501 SAMTools SNP 280681 280681 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.034%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C38:41 scaffold501 SAMTools SNP 280744 280744 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C52:55 scaffold501 SAMTools SNP 280843 280843 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C126%2C0:99 scaffold501 SAMTools SNP 280975 280975 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C11%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold501 SAMTools SNP 281611 281611 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C63%2C0:99 scaffold501 SAMTools SNP 281773 281773 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 289625 289625 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold501 SAMTools SNP 289665 289665 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold501 SAMTools SNP 289989 289989 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 290006 290006 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 291375 291375 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold501 SAMTools SNP 291390 291390 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold501 SAMTools SNP 291501 291501 33.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold501 SAMTools SNP 293662 293662 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold501 SAMTools SNP 293823 293823 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold501 SAMTools SNP 295081 295081 24.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C6.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C11:14 scaffold501 SAMTools SNP 299109 299109 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold501 SAMTools SNP 299238 299238 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.12%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C130:31 scaffold501 SAMTools SNP 299249 299249 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold501 SAMTools SNP 299847 299847 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C33%2C0:63 scaffold501 SAMTools SNP 301706 301706 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1.4e-14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C199:99 scaffold501 SAMTools SNP 302242 302242 30.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold501 SAMTools SNP 302523 302523 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold501 SAMTools SNP 303784 303784 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C21%2C9%2C3%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold501 SAMTools SNP 304623 304623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold501 SAMTools SNP 305136 305136 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.014%2C1.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold501 SAMTools SNP 305185 305185 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C15%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold501 SAMTools SNP 305735 305735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold501 SAMTools SNP 305822 305822 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold501 SAMTools SNP 306179 306179 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C213:60 scaffold501 SAMTools SNP 306209 306209 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold501 SAMTools SNP 306494 306494 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold501 SAMTools SNP 306602 306602 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 306744 306744 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C46%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 306774 306774 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C48%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 307419 307419 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C9%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C163%2C0:99 scaffold501 SAMTools SNP 309016 309016 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 309684 309684 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D804%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C788%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 316341 316341 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 316541 316541 6.79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold501 SAMTools SNP 319101 319101 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D79.6%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C117:99 scaffold501 SAMTools SNP 319164 319164 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold501 SAMTools SNP 319174 319174 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold501 SAMTools SNP 319560 319560 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold501 SAMTools SNP 319739 319739 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold501 SAMTools SNP 319756 319756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 319765 319765 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.21%2C0.03%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C182:99 scaffold501 SAMTools SNP 319789 319789 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold501 SAMTools SNP 320027 320027 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold501 SAMTools SNP 320033 320033 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold501 SAMTools SNP 321651 321651 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.28%2C6.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C232:30 scaffold501 SAMTools SNP 321861 321861 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold501 SAMTools SNP 321864 321864 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold501 SAMTools SNP 322289 322289 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.4%2C3.3e-21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold501 SAMTools SNP 322300 322300 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold501 SAMTools SNP 322331 322331 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.62%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold501 SAMTools SNP 323152 323152 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 323204 323204 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold501 SAMTools SNP 323646 323646 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold501 SAMTools SNP 323647 323647 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold501 SAMTools SNP 324934 324934 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C57%2C0:84 scaffold501 SAMTools SNP 325585 325585 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold501 SAMTools SNP 326322 326322 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 326363 326363 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C30%2C0:57 scaffold501 SAMTools SNP 327012 327012 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold501 SAMTools SNP 327237 327237 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold501 SAMTools SNP 327778 327778 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.33%2C0.094%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C138:50 scaffold501 SAMTools SNP 329007 329007 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.0044%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold501 SAMTools SNP 329218 329218 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C18%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold501 SAMTools SNP 329266 329266 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.68%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold501 SAMTools SNP 329290 329290 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.23%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold501 SAMTools SNP 329323 329323 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold501 SAMTools SNP 329568 329568 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold501 SAMTools SNP 330048 330048 9.31 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C9%2C39%2C0%2C36:8 scaffold501 SAMTools SNP 330578 330578 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold501 SAMTools SNP 330972 330972 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold501 SAMTools SNP 331041 331041 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold501 SAMTools SNP 331200 331200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold501 SAMTools SNP 331218 331218 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C7%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.14%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold501 SAMTools SNP 331736 331736 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.27%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold501 SAMTools SNP 331991 331991 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C17%3BMQ%3D49%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold501 SAMTools SNP 332072 332072 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold501 SAMTools SNP 333410 333410 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 333996 333996 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 334002 334002 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C4%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold501 SAMTools SNP 334635 334635 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C8.7e-10%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 334968 334968 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 335016 335016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold501 SAMTools SNP 335022 335022 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C20%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold501 SAMTools SNP 335578 335578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.15%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 337265 337265 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C10%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D9.6e-05%2C2.6e-20%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold501 SAMTools SNP 337267 337267 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C7%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.0024%2C3.1e-08%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold501 SAMTools SNP 337653 337653 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C39%2C3%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.00044%2C1%2C2.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold501 SAMTools SNP 337670 337670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C7%2C23%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold501 SAMTools SNP 337710 337710 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 342052 342052 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold501 SAMTools SNP 342305 342305 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold501 SAMTools SNP 342323 342323 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.25%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold501 SAMTools SNP 352754 352754 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.9e-32%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C221:50 scaffold501 SAMTools SNP 354140 354140 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold501 SAMTools SNP 355217 355217 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold501 SAMTools SNP 356762 356762 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C22%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C220%2C0:99 scaffold501 SAMTools SNP 357362 357362 57.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold501 SAMTools SNP 360493 360493 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold501 SAMTools SNP 360497 360497 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold501 SAMTools SNP 360526 360526 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold501 SAMTools SNP 361940 361940 32.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold501 SAMTools SNP 362054 362054 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold501 SAMTools SNP 370111 370111 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold501 SAMTools SNP 377416 377416 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold501 SAMTools SNP 379707 379707 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold501 SAMTools SNP 382671 382671 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C31%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 382710 382710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 383354 383354 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C45%2C1%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.43%2C0.0012%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold501 SAMTools SNP 383410 383410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C35%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C0.29%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 383974 383974 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C35%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold501 SAMTools SNP 384024 384024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 384066 384066 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C23%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.23%2C8.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold501 SAMTools SNP 384093 384093 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.18%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C237:99 scaffold501 SAMTools SNP 384099 384099 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C23%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.49%2C3.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold501 SAMTools SNP 397674 397674 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C38:41 scaffold501 SAMTools SNP 398050 398050 212 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C26%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C6%2C196%2C0%2C220:63 scaffold501 SAMTools SNP 398059 398059 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold501 SAMTools SNP 398232 398232 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold501 SAMTools SNP 398268 398268 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold501 SAMTools SNP 398686 398686 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 398690 398690 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 398702 398702 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.061%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 398919 398919 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold501 SAMTools SNP 399100 399100 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 399106 399106 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C249:63 scaffold501 SAMTools SNP 399157 399157 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold501 SAMTools SNP 399211 399211 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold501 SAMTools SNP 399214 399214 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold501 SAMTools SNP 400134 400134 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 400191 400191 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold501 SAMTools SNP 401727 401727 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.0076%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C80:33 scaffold501 SAMTools SNP 401817 401817 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold501 SAMTools SNP 401877 401877 146 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C94%2C76%2C183%2C0%2C177:33 scaffold501 SAMTools SNP 401996 401996 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 402080 402080 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold501 SAMTools SNP 402200 402200 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold501 SAMTools SNP 402223 402223 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold501 SAMTools SNP 402277 402277 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold501 SAMTools SNP 402308 402308 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold501 SAMTools SNP 402410 402410 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold501 SAMTools SNP 402640 402640 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold501 SAMTools SNP 402667 402667 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold501 SAMTools SNP 405045 405045 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 405063 405063 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 405087 405087 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 405132 405132 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold501 SAMTools SNP 405357 405357 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 405897 405897 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 406054 406054 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C154:99 scaffold501 SAMTools SNP 406066 406066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold501 SAMTools SNP 406227 406227 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold501 SAMTools SNP 406435 406435 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold501 SAMTools SNP 407161 407161 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold501 SAMTools SNP 407180 407180 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold501 SAMTools SNP 407230 407230 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C36%2C0:69 scaffold501 SAMTools SNP 407331 407331 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold501 SAMTools SNP 407344 407344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 408672 408672 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 409679 409679 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold501 SAMTools SNP 410371 410371 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0035%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold501 SAMTools SNP 410410 410410 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold501 SAMTools SNP 411840 411840 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 411867 411867 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 411963 411963 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 412504 412504 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold501 SAMTools SNP 413093 413093 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold501 SAMTools SNP 413800 413800 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold501 SAMTools SNP 413803 413803 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold501 SAMTools SNP 416410 416410 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold501 SAMTools SNP 416434 416434 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold501 SAMTools SNP 416452 416452 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.21%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C41:44 scaffold501 SAMTools SNP 417150 417150 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold501 SAMTools SNP 417169 417169 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold501 SAMTools SNP 418141 418141 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold501 SAMTools SNP 418477 418477 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold501 SAMTools SNP 418859 418859 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold501 SAMTools SNP 419092 419092 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold501 SAMTools SNP 419424 419424 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 424237 424237 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold501 SAMTools SNP 424589 424589 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold501 SAMTools SNP 424625 424625 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.38%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold501 SAMTools SNP 425109 425109 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C0.24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C234:99 scaffold501 SAMTools SNP 425214 425214 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold501 SAMTools SNP 426561 426561 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 431146 431146 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold501 SAMTools SNP 439693 439693 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold501 SAMTools SNP 443504 443504 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold501 SAMTools SNP 494943 494943 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 497970 497970 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.6e-06%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C156:56 scaffold501 SAMTools SNP 497988 497988 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C7.3e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C132:72 scaffold501 SAMTools SNP 505677 505677 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.023%2C6.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold501 SAMTools SNP 514248 514248 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold501 SAMTools SNP 514250 514250 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold501 SAMTools SNP 529740 529740 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 566107 566107 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold501 SAMTools SNP 576763 576763 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C0%2C8%3BMQ%3D45%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold501 SAMTools SNP 601409 601409 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold501 SAMTools SNP 634628 634628 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C184%2C0:99 scaffold501 SAMTools SNP 636942 636942 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C2.8e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C158:88 scaffold501 SAMTools SNP 637276 637276 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold501 SAMTools SNP 637387 637387 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.37%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold501 SAMTools SNP 637886 637886 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold501 SAMTools SNP 637962 637962 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold501 SAMTools SNP 638046 638046 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold501 SAMTools SNP 642286 642286 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 643869 643869 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.033%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold501 SAMTools SNP 644582 644582 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold501 SAMTools SNP 649441 649441 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D45%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold501 SAMTools SNP 659339 659339 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C24%2C0:45 scaffold501 SAMTools SNP 659396 659396 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C21%2C0:39 scaffold501 SAMTools SNP 659795 659795 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.033%2C0.00047%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold501 SAMTools SNP 660574 660574 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.55%2C0.28%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold501 SAMTools SNP 660577 660577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold501 SAMTools SNP 661501 661501 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C1%2C11%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold501 SAMTools SNP 661522 661522 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold501 SAMTools SNP 661552 661552 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold501 SAMTools SNP 661643 661643 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 662398 662398 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold501 SAMTools SNP 662433 662433 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 667127 667127 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C13%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0077%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold501 SAMTools SNP 667158 667158 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C18%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0095%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold501 SAMTools SNP 669423 669423 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 669430 669430 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D22%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.32%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold501 SAMTools SNP 669470 669470 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.32%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 669491 669491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 670177 670177 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.11%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 671570 671570 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 671579 671579 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 672217 672217 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 672242 672242 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C7%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.4%2C0.15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C227:99 scaffold501 SAMTools SNP 689785 689785 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C51%2C0:99 scaffold501 SAMTools SNP 696903 696903 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold501 SAMTools SNP 697010 697010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold501 SAMTools SNP 697024 697024 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold501 SAMTools SNP 697049 697049 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.044%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold501 SAMTools SNP 697603 697603 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold501 SAMTools SNP 698360 698360 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.59%2C0.17%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C246:99 scaffold501 SAMTools SNP 698394 698394 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold501 SAMTools SNP 698406 698406 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold501 SAMTools SNP 698442 698442 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.015%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold501 SAMTools SNP 698444 698444 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C6%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.00026%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C182:99 scaffold501 SAMTools SNP 699990 699990 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C0.28%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold501 SAMTools SNP 700051 700051 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold501 SAMTools SNP 701018 701018 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold501 SAMTools SNP 701027 701027 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 701078 701078 17.1 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C37%2C34%2C47%2C0%2C44:6 scaffold501 SAMTools SNP 701111 701111 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold501 SAMTools SNP 702866 702866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold501 SAMTools SNP 702888 702888 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.2%2C0.023%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C227:59 scaffold501 SAMTools SNP 720592 720592 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 724938 724938 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold501 SAMTools SNP 726231 726231 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 726466 726466 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 765940 765940 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold501 SAMTools SNP 786878 786878 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold501 SAMTools SNP 786944 786944 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.43%2C0.00069%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C163:93 scaffold501 SAMTools SNP 787754 787754 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 787859 787859 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 788497 788497 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 788989 788989 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 789004 789004 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold501 SAMTools SNP 789628 789628 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold501 SAMTools SNP 789658 789658 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.45%2C3.2e-06%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold501 SAMTools SNP 790161 790161 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold501 SAMTools SNP 791804 791804 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold501 SAMTools SNP 794811 794811 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold501 SAMTools SNP 796748 796748 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold501 SAMTools SNP 796814 796814 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold501 SAMTools SNP 797747 797747 104 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold501 SAMTools SNP 797762 797762 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C124:75 scaffold501 SAMTools SNP 798460 798460 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C66:69 scaffold501 SAMTools SNP 798517 798517 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold501 SAMTools SNP 798801 798801 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold501 SAMTools SNP 799528 799528 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.25%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold501 SAMTools SNP 799536 799536 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold501 SAMTools SNP 801761 801761 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold501 SAMTools SNP 801881 801881 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold501 SAMTools SNP 803644 803644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold501 SAMTools SNP 803668 803668 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 803821 803821 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 804503 804503 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 808736 808736 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 809443 809443 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 810299 810299 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 810317 810317 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 810911 810911 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C172:99 scaffold501 SAMTools SNP 811328 811328 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold501 SAMTools SNP 811392 811392 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold501 SAMTools SNP 812600 812600 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 812622 812622 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold501 SAMTools SNP 813835 813835 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold501 SAMTools SNP 814871 814871 88 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C23%2C14%2C117%2C0%2C114:16 scaffold501 SAMTools SNP 814883 814883 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 815197 815197 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold501 SAMTools SNP 817034 817034 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold501 SAMTools SNP 817809 817809 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold501 SAMTools SNP 818143 818143 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 818569 818569 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 819455 819455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 851180 851180 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 854564 854564 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 854726 854726 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold501 SAMTools SNP 869317 869317 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 869385 869385 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 869751 869751 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 870056 870056 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold501 SAMTools SNP 870482 870482 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 870557 870557 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 871230 871230 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 871234 871234 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 872080 872080 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold501 SAMTools SNP 875543 875543 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold501 SAMTools SNP 875917 875917 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.043%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold501 SAMTools SNP 883120 883120 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.033%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C95:98 scaffold501 SAMTools SNP 883736 883736 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C253:94 scaffold501 SAMTools SNP 887447 887447 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C4e-05%2C1%2C6.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold501 SAMTools SNP 888700 888700 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold501 SAMTools SNP 888709 888709 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.14%2C0.04%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C136:70 scaffold501 SAMTools SNP 888841 888841 28.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold501 SAMTools SNP 888850 888850 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold501 SAMTools SNP 890607 890607 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 928206 928206 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 930516 930516 8.22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold501 SAMTools SNP 934966 934966 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold501 SAMTools SNP 936560 936560 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold501 SAMTools SNP 936575 936575 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold501 SAMTools SNP 939226 939226 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 948385 948385 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 950550 950550 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 985050 985050 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold501 SAMTools SNP 985452 985452 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold501 SAMTools SNP 1026168 1026168 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 1026183 1026183 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold501 SAMTools SNP 1046047 1046047 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold501 SAMTools SNP 1046133 1046133 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C7.9e-07%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C57:60 scaffold501 SAMTools SNP 1047068 1047068 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold501 SAMTools SNP 1056376 1056376 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold501 SAMTools SNP 1056915 1056915 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold501 SAMTools SNP 1057627 1057627 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold501 SAMTools SNP 1057639 1057639 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.49%2C0.14%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold501 SAMTools SNP 1068610 1068610 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold501 SAMTools SNP 1069412 1069412 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold501 SAMTools SNP 1069508 1069508 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C84%2C0:99 scaffold501 SAMTools SNP 1069924 1069924 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C87%2C0:99 scaffold501 SAMTools SNP 1070169 1070169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C35%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold501 SAMTools SNP 1070229 1070229 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C11%2C39%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.093%2C1%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1070486 1070486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C94%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 1071961 1071961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C23%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold501 SAMTools SNP 1071964 1071964 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold501 SAMTools SNP 1072625 1072625 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold501 SAMTools SNP 1072884 1072884 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.9e-144%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold501 SAMTools SNP 1072901 1072901 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C57%2C0:99 scaffold501 SAMTools SNP 1073559 1073559 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C57%2C56%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C4.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1073604 1073604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C50%2C82%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1074053 1074053 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C129%2C41%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-06%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1074070 1074070 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C133%2C56%2C85%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-08%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1074116 1074116 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C46%2C9%2C27%3BMQ%3D50%3BFQ%3D176%3BPV4%3D6.8e-07%2C1.1e-13%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold501 SAMTools SNP 1076295 1076295 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 1076427 1076427 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 1076614 1076614 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C24%2C32%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C0.092%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold501 SAMTools SNP 1077609 1077609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C312%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 1082158 1082158 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold501 SAMTools SNP 1083048 1083048 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold501 SAMTools SNP 1084052 1084052 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 1085561 1085561 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1086166 1086166 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1086599 1086599 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold501 SAMTools SNP 1090114 1090114 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold501 SAMTools SNP 1090155 1090155 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold501 SAMTools SNP 1092310 1092310 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 1095896 1095896 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold501 SAMTools SNP 1132020 1132020 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold501 SAMTools SNP 1132982 1132982 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C138%2C0:99 scaffold501 SAMTools SNP 1133662 1133662 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold501 SAMTools SNP 1133664 1133664 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold501 SAMTools SNP 1134662 1134662 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1145662 1145662 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold501 SAMTools SNP 1147551 1147551 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D5.31%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold501 SAMTools SNP 1148006 1148006 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold501 SAMTools SNP 1153730 1153730 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold501 SAMTools SNP 1153755 1153755 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold501 SAMTools SNP 1154293 1154293 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold501 SAMTools SNP 1154612 1154612 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold501 SAMTools SNP 1155887 1155887 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold501 SAMTools SNP 1156221 1156221 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold501 SAMTools SNP 1156388 1156388 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold501 SAMTools SNP 1158218 1158218 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold501 SAMTools SNP 1159086 1159086 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold501 SAMTools SNP 1178140 1178140 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 1178925 1178925 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold501 SAMTools SNP 1178949 1178949 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold501 SAMTools SNP 1180740 1180740 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1183456 1183456 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1183463 1183463 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1183726 1183726 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1188202 1188202 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold501 SAMTools SNP 1189314 1189314 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold501 SAMTools SNP 1208720 1208720 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C61:64 scaffold501 SAMTools SNP 1209080 1209080 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.11%2C1.3e-09%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C120:42 scaffold501 SAMTools SNP 1209102 1209102 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C17%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold501 SAMTools SNP 1209107 1209107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C17%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.34%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold501 SAMTools SNP 1216892 1216892 22.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold501 SAMTools SNP 1219151 1219151 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.096%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C138:51 scaffold501 SAMTools SNP 1220969 1220969 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold501 SAMTools SNP 1221315 1221315 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.26%2C0.18%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold501 SAMTools SNP 1221357 1221357 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C246:99 scaffold501 SAMTools SNP 1222972 1222972 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.16%2C0.082%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C222:99 scaffold501 SAMTools SNP 1223411 1223411 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C42%2C0:71 scaffold501 SAMTools SNP 1223699 1223699 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C24%2C0:45 scaffold501 SAMTools SNP 1261105 1261105 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C144%2C0:99 scaffold501 SAMTools SNP 1262958 1262958 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C4%2C0:7 scaffold501 SAMTools SNP 1263020 1263020 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1266168 1266168 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C313%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold501 SAMTools SNP 1266360 1266360 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C50%2C0%2C10%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold501 SAMTools SNP 1266361 1266361 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C19%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold501 SAMTools SNP 1290658 1290658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1326393 1326393 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1327050 1327050 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold501 SAMTools SNP 1334142 1334142 61.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold501 SAMTools SNP 1334171 1334171 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold501 SAMTools SNP 1334465 1334465 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 53593 53593 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 53607 53607 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 53838 53838 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold502 SAMTools SNP 53853 53853 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold502 SAMTools SNP 54716 54716 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold502 SAMTools SNP 54737 54737 71.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D29%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C18%2C0:33 scaffold502 SAMTools SNP 54932 54932 27.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold502 SAMTools SNP 54946 54946 71.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C15%2C0:27 scaffold502 SAMTools SNP 55481 55481 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.099%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold502 SAMTools SNP 55483 55483 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold502 SAMTools SNP 55505 55505 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 82876 82876 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold502 SAMTools SNP 82888 82888 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold502 SAMTools SNP 84211 84211 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C63:43 scaffold502 SAMTools SNP 84338 84338 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 84358 84358 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 97946 97946 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold502 SAMTools SNP 99104 99104 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold502 SAMTools SNP 100738 100738 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 100762 100762 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 103666 103666 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 103991 103991 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 190667 190667 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold502 SAMTools SNP 191589 191589 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold502 SAMTools SNP 191959 191959 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold502 SAMTools SNP 192270 192270 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold502 SAMTools SNP 192771 192771 54.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold502 SAMTools SNP 194280 194280 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold502 SAMTools SNP 194784 194784 43.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold502 SAMTools SNP 197016 197016 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold502 SAMTools SNP 197566 197566 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C126%2C0:99 scaffold502 SAMTools SNP 198031 198031 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C179:31 scaffold502 SAMTools SNP 198563 198563 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold502 SAMTools SNP 200873 200873 64 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C75%2C0%2C95%2C59%2C92:99 scaffold502 SAMTools SNP 200913 200913 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold502 SAMTools SNP 205233 205233 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold502 SAMTools SNP 228369 228369 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 228776 228776 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold502 SAMTools SNP 228909 228909 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold502 SAMTools SNP 229088 229088 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C160:99 scaffold502 SAMTools SNP 229117 229117 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold502 SAMTools SNP 229391 229391 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 235477 235477 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 235480 235480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 235495 235495 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 235519 235519 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C250:99 scaffold502 SAMTools SNP 235566 235566 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold502 SAMTools SNP 236083 236083 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.23%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold502 SAMTools SNP 236104 236104 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold502 SAMTools SNP 237607 237607 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold502 SAMTools SNP 237621 237621 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold502 SAMTools SNP 238503 238503 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 239056 239056 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 239130 239130 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 239160 239160 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 271142 271142 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold502 SAMTools SNP 293996 293996 25.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold502 SAMTools SNP 297749 297749 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold502 SAMTools SNP 298298 298298 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C20%2C62%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 298613 298613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C6%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 300007 300007 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold502 SAMTools SNP 305239 305239 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold502 SAMTools SNP 306238 306238 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold502 SAMTools SNP 306762 306762 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold502 SAMTools SNP 306765 306765 36 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C9%2C65%2C0%2C62:16 scaffold502 SAMTools SNP 307319 307319 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C90%3BMQ%3D50%3BFQ%3D-274%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C247%2C0:99 scaffold502 SAMTools SNP 307942 307942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C235%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold502 SAMTools SNP 309052 309052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold502 SAMTools SNP 309154 309154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C6%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold502 SAMTools SNP 309193 309193 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C21%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold502 SAMTools SNP 310455 310455 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 310461 310461 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C6%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.5e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 310531 310531 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 310655 310655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C48%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold502 SAMTools SNP 310711 310711 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C9.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold502 SAMTools SNP 315139 315139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 315298 315298 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold502 SAMTools SNP 316148 316148 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D660%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D261%2C60%2C57%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-06%2C1%2C1%2C1.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 318955 318955 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C43%2C125%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.5e-16%2C0.33%2C1%2C1.4e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold502 SAMTools SNP 322907 322907 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.2%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold502 SAMTools SNP 323512 323512 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold502 SAMTools SNP 324258 324258 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C5%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold502 SAMTools SNP 326071 326071 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C33%3BMQ%3D3%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C126%2C0:93 scaffold502 SAMTools SNP 327511 327511 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C2%3BMQ%3D41%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C172%2C0:99 scaffold502 SAMTools SNP 327613 327613 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C41%3BMQ%3D39%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold502 SAMTools SNP 328100 328100 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D18%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C69%2C0:99 scaffold502 SAMTools SNP 336949 336949 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold502 SAMTools SNP 337773 337773 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C47%3BMQ%3D46%3BFQ%3D-143%3BPV4%3D1%2C0.27%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C116%2C0:99 scaffold502 SAMTools SNP 337919 337919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C35%3BMQ%3D35%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold502 SAMTools SNP 345284 345284 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C53%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C85%2C0:99 scaffold502 SAMTools SNP 345336 345336 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C236:99 scaffold502 SAMTools SNP 352511 352511 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold502 SAMTools SNP 352532 352532 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C110:87 scaffold502 SAMTools SNP 352629 352629 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C187:82 scaffold502 SAMTools SNP 353286 353286 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold502 SAMTools SNP 360461 360461 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold502 SAMTools SNP 361484 361484 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 361904 361904 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold502 SAMTools SNP 399785 399785 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold502 SAMTools SNP 399992 399992 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 419407 419407 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold502 SAMTools SNP 499941 499941 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold502 SAMTools SNP 527741 527741 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold502 SAMTools SNP 540127 540127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 540894 540894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 561994 561994 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 562237 562237 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 563318 563318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 565729 565729 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.1%2C0.0053%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C112:59 scaffold502 SAMTools SNP 565905 565905 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold502 SAMTools SNP 565953 565953 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold502 SAMTools SNP 565965 565965 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold502 SAMTools SNP 565977 565977 60.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold502 SAMTools SNP 566033 566033 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold502 SAMTools SNP 567926 567926 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C242:99 scaffold502 SAMTools SNP 568581 568581 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C21%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C197:99 scaffold502 SAMTools SNP 569186 569186 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C63:66 scaffold502 SAMTools SNP 570132 570132 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.25%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold502 SAMTools SNP 570133 570133 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold502 SAMTools SNP 571947 571947 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold502 SAMTools SNP 573402 573402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold502 SAMTools SNP 575630 575630 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold502 SAMTools SNP 577249 577249 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C217:99 scaffold502 SAMTools SNP 579396 579396 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold502 SAMTools SNP 579427 579427 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C225:99 scaffold502 SAMTools SNP 581455 581455 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C216:99 scaffold502 SAMTools SNP 581828 581828 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold502 SAMTools SNP 581853 581853 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold502 SAMTools SNP 583282 583282 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold502 SAMTools SNP 583288 583288 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.0031%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold502 SAMTools SNP 583315 583315 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold502 SAMTools SNP 585899 585899 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold502 SAMTools SNP 585926 585926 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold502 SAMTools SNP 586387 586387 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold502 SAMTools SNP 586413 586413 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold502 SAMTools SNP 586997 586997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 587029 587029 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 587030 587030 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 594960 594960 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 594986 594986 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 606288 606288 24.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold502 SAMTools SNP 606548 606548 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold502 SAMTools SNP 606885 606885 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C78%2C0:99 scaffold502 SAMTools SNP 607428 607428 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C3.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold502 SAMTools SNP 607461 607461 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 609215 609215 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C3%2C14%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.72%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold502 SAMTools SNP 609452 609452 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold502 SAMTools SNP 611682 611682 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold502 SAMTools SNP 612165 612165 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold502 SAMTools SNP 613478 613478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold502 SAMTools SNP 613516 613516 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold502 SAMTools SNP 613528 613528 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold502 SAMTools SNP 615569 615569 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold502 SAMTools SNP 617062 617062 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold502 SAMTools SNP 617107 617107 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.26%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold502 SAMTools SNP 617228 617228 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold502 SAMTools SNP 617287 617287 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold502 SAMTools SNP 619170 619170 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold502 SAMTools SNP 619594 619594 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold502 SAMTools SNP 621596 621596 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C48%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 622980 622980 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold502 SAMTools SNP 623297 623297 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 623302 623302 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 623359 623359 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold502 SAMTools SNP 623969 623969 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 623981 623981 17.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold502 SAMTools SNP 623997 623997 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold502 SAMTools SNP 626239 626239 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold502 SAMTools SNP 626298 626298 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold502 SAMTools SNP 626301 626301 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold502 SAMTools SNP 626310 626310 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 629009 629009 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C238:66 scaffold502 SAMTools SNP 629912 629912 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 630035 630035 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C251:99 scaffold502 SAMTools SNP 630051 630051 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.51%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold502 SAMTools SNP 631398 631398 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C26%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold502 SAMTools SNP 632046 632046 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold502 SAMTools SNP 632298 632298 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold502 SAMTools SNP 632371 632371 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold502 SAMTools SNP 633372 633372 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold502 SAMTools SNP 633375 633375 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.66%2C0.37%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold502 SAMTools SNP 636316 636316 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.48%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold502 SAMTools SNP 636612 636612 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C6%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold502 SAMTools SNP 636679 636679 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.08%2C0.0035%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold502 SAMTools SNP 642716 642716 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold502 SAMTools SNP 642771 642771 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C2%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.11%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold502 SAMTools SNP 642792 642792 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold502 SAMTools SNP 642957 642957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C39%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold502 SAMTools SNP 643023 643023 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.51%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold502 SAMTools SNP 643029 643029 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold502 SAMTools SNP 644000 644000 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0056%2C0.1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C238:99 scaffold502 SAMTools SNP 644057 644057 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold502 SAMTools SNP 644090 644090 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C3%2C6%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.48%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold502 SAMTools SNP 644272 644272 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold502 SAMTools SNP 644669 644669 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C151:99 scaffold502 SAMTools SNP 644834 644834 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold502 SAMTools SNP 645686 645686 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold502 SAMTools SNP 645695 645695 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold502 SAMTools SNP 645725 645725 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold502 SAMTools SNP 646352 646352 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold502 SAMTools SNP 647743 647743 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 648273 648273 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C48%2C0:93 scaffold502 SAMTools SNP 648299 648299 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.17%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold502 SAMTools SNP 648318 648318 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C199:79 scaffold502 SAMTools SNP 648342 648342 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold502 SAMTools SNP 648780 648780 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold502 SAMTools SNP 663586 663586 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold502 SAMTools SNP 663629 663629 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold502 SAMTools SNP 664356 664356 140 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold502 SAMTools SNP 665370 665370 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.2%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold502 SAMTools SNP 666811 666811 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold502 SAMTools SNP 666832 666832 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold502 SAMTools SNP 666871 666871 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C239:99 scaffold502 SAMTools SNP 668604 668604 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold502 SAMTools SNP 671399 671399 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.46%2C0.031%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C208:67 scaffold502 SAMTools SNP 690563 690563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold502 SAMTools SNP 692096 692096 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold502 SAMTools SNP 692561 692561 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold502 SAMTools SNP 693691 693691 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 696539 696539 17.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold502 SAMTools SNP 696626 696626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C49%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold502 SAMTools SNP 696743 696743 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold502 SAMTools SNP 697254 697254 202 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20%2C248%2C0%2C245:51 scaffold502 SAMTools SNP 697903 697903 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C16%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold502 SAMTools SNP 698172 698172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C44%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold502 SAMTools SNP 698441 698441 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.34%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold502 SAMTools SNP 698453 698453 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold502 SAMTools SNP 698461 698461 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 698545 698545 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C69%2C0:99 scaffold502 SAMTools SNP 699225 699225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C15%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0098%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold502 SAMTools SNP 699234 699234 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.061%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold502 SAMTools SNP 699252 699252 73.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold502 SAMTools SNP 700426 700426 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 700432 700432 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 700588 700588 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.084%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 700664 700664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C44%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 704160 704160 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C140%2C3%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.18%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 704225 704225 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.54%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold502 SAMTools SNP 704227 704227 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.51%2C1%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold502 SAMTools SNP 706322 706322 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold502 SAMTools SNP 706899 706899 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.49%2C1.6e-11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C140:71 scaffold502 SAMTools SNP 706995 706995 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.45%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold502 SAMTools SNP 708869 708869 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold502 SAMTools SNP 756155 756155 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold502 SAMTools SNP 756897 756897 53.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold502 SAMTools SNP 757567 757567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold502 SAMTools SNP 758595 758595 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold502 SAMTools SNP 782614 782614 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 782788 782788 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 782867 782867 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 787843 787843 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 792501 792501 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 792549 792549 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 793068 793068 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 793859 793859 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 794277 794277 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold502 SAMTools SNP 794503 794503 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C180:99 scaffold502 SAMTools SNP 794630 794630 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C60%2C0:99 scaffold502 SAMTools SNP 796551 796551 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold502 SAMTools SNP 798153 798153 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold502 SAMTools SNP 800418 800418 23.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold502 SAMTools SNP 800431 800431 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold502 SAMTools SNP 800520 800520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 891366 891366 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C33%2C0:63 scaffold502 SAMTools SNP 910489 910489 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold502 SAMTools SNP 923442 923442 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold502 SAMTools SNP 924172 924172 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.017%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold502 SAMTools SNP 924482 924482 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold502 SAMTools SNP 924491 924491 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold502 SAMTools SNP 925093 925093 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold502 SAMTools SNP 931975 931975 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold502 SAMTools SNP 943760 943760 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D31%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C54%2C0:76 scaffold503 SAMTools SNP 511 511 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold503 SAMTools SNP 3870 3870 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C228:67 scaffold503 SAMTools SNP 3877 3877 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C225:53 scaffold503 SAMTools SNP 3886 3886 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C247:99 scaffold503 SAMTools SNP 3895 3895 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold503 SAMTools SNP 9656 9656 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold503 SAMTools SNP 9800 9800 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold503 SAMTools SNP 9852 9852 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 27105 27105 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold503 SAMTools SNP 27111 27111 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold503 SAMTools SNP 27209 27209 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C19%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold503 SAMTools SNP 28824 28824 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold503 SAMTools SNP 28846 28846 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold503 SAMTools SNP 29007 29007 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C17%2C18%2C3%3BMQ%3D46%3BFQ%3D198%3BPV4%3D0.15%2C1%2C7.3e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold503 SAMTools SNP 29143 29143 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold503 SAMTools SNP 30591 30591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C10%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.34%2C0.19%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold503 SAMTools SNP 33126 33126 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C240:99 scaffold503 SAMTools SNP 33557 33557 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold503 SAMTools SNP 33599 33599 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold503 SAMTools SNP 33795 33795 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold503 SAMTools SNP 48294 48294 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 48324 48324 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 54102 54102 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold503 SAMTools SNP 54558 54558 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold503 SAMTools SNP 57468 57468 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold503 SAMTools SNP 57488 57488 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 57924 57924 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold503 SAMTools SNP 57932 57932 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 57977 57977 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 58171 58171 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 58741 58741 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold503 SAMTools SNP 60822 60822 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold503 SAMTools SNP 61096 61096 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 61327 61327 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold503 SAMTools SNP 62063 62063 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold503 SAMTools SNP 63760 63760 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold503 SAMTools SNP 64498 64498 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 64572 64572 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold503 SAMTools SNP 64690 64690 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold503 SAMTools SNP 64720 64720 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold503 SAMTools SNP 65249 65249 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold503 SAMTools SNP 65355 65355 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.014%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold503 SAMTools SNP 65399 65399 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold503 SAMTools SNP 65745 65745 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 66459 66459 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.1e-06%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C156:33 scaffold503 SAMTools SNP 72515 72515 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold503 SAMTools SNP 72584 72584 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold503 SAMTools SNP 79784 79784 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 79789 79789 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 83908 83908 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold503 SAMTools SNP 96026 96026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold503 SAMTools SNP 96050 96050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold503 SAMTools SNP 97137 97137 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold503 SAMTools SNP 97700 97700 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C84:87 scaffold503 SAMTools SNP 101883 101883 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.38%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C219:99 scaffold503 SAMTools SNP 102033 102033 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold503 SAMTools SNP 102976 102976 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold503 SAMTools SNP 103000 103000 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 103153 103153 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C30%2C0:57 scaffold503 SAMTools SNP 103277 103277 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C45%2C0:87 scaffold503 SAMTools SNP 114948 114948 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold503 SAMTools SNP 126877 126877 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.67%2C4.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold503 SAMTools SNP 127003 127003 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C8e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C216:47 scaffold503 SAMTools SNP 127110 127110 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C107:41 scaffold503 SAMTools SNP 127263 127263 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold503 SAMTools SNP 127662 127662 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold503 SAMTools SNP 127833 127833 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D88.9%3BPV4%3D0.33%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C116:99 scaffold503 SAMTools SNP 134340 134340 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold503 SAMTools SNP 135002 135002 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold503 SAMTools SNP 156904 156904 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00039%2C4.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold503 SAMTools SNP 156929 156929 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold503 SAMTools SNP 158044 158044 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold503 SAMTools SNP 160757 160757 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold504 SAMTools SNP 6402 6402 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 17284 17284 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold504 SAMTools SNP 31054 31054 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 31566 31566 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 31950 31950 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.42%3BPV4%3D1%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C35:38 scaffold504 SAMTools SNP 51213 51213 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 59218 59218 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C155:31 scaffold504 SAMTools SNP 60605 60605 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 60626 60626 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 61102 61102 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 61135 61135 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 61892 61892 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 62162 62162 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold504 SAMTools SNP 63475 63475 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 63669 63669 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 65008 65008 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 65852 65852 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold504 SAMTools SNP 67345 67345 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 67351 67351 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 69167 69167 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 69374 69374 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 71251 71251 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold504 SAMTools SNP 71254 71254 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold504 SAMTools SNP 71899 71899 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold504 SAMTools SNP 71911 71911 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C0.044%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C163:98 scaffold504 SAMTools SNP 72594 72594 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 72735 72735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 73050 73050 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D45.2%3BPV4%3D0.33%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C80:75 scaffold504 SAMTools SNP 73374 73374 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D47%3BFQ%3D91.9%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C135:99 scaffold504 SAMTools SNP 73607 73607 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C32:35 scaffold504 SAMTools SNP 74128 74128 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 77027 77027 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold504 SAMTools SNP 77394 77394 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold504 SAMTools SNP 77790 77790 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold504 SAMTools SNP 77826 77826 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold504 SAMTools SNP 78336 78336 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.16%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold504 SAMTools SNP 78353 78353 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold504 SAMTools SNP 79117 79117 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 79157 79157 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.48%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C207:99 scaffold504 SAMTools SNP 79159 79159 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold504 SAMTools SNP 88298 88298 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold504 SAMTools SNP 101474 101474 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold504 SAMTools SNP 105369 105369 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold504 SAMTools SNP 105424 105424 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C0.0014%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold504 SAMTools SNP 105445 105445 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.27%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold504 SAMTools SNP 106298 106298 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold504 SAMTools SNP 106321 106321 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold504 SAMTools SNP 106953 106953 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold504 SAMTools SNP 107501 107501 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold504 SAMTools SNP 107892 107892 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold504 SAMTools SNP 112540 112540 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C47%2C7%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 112775 112775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 112793 112793 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C242:99 scaffold504 SAMTools SNP 113339 113339 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 113351 113351 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 113363 113363 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C3e-10%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C176:70 scaffold504 SAMTools SNP 113441 113441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold504 SAMTools SNP 116491 116491 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold504 SAMTools SNP 116507 116507 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.47%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C241:99 scaffold504 SAMTools SNP 117117 117117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C44%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold504 SAMTools SNP 117545 117545 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 120696 120696 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold504 SAMTools SNP 122021 122021 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.039%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C252:99 scaffold504 SAMTools SNP 123019 123019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold504 SAMTools SNP 123049 123049 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C58%2C3%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 124502 124502 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 125066 125066 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C4%2C16%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.47%2C2.5e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold504 SAMTools SNP 125111 125111 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C30%2C0:57 scaffold504 SAMTools SNP 125286 125286 8.22 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold504 SAMTools SNP 125422 125422 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold504 SAMTools SNP 125501 125501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold504 SAMTools SNP 125531 125531 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C255%2C0:99 scaffold504 SAMTools SNP 125669 125669 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D99.9%3BPV4%3D1%2C7.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C129:99 scaffold504 SAMTools SNP 127070 127070 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.67%2C9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold504 SAMTools SNP 127571 127571 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C8.2e-22%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C227:99 scaffold504 SAMTools SNP 139788 139788 55.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold504 SAMTools SNP 141014 141014 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C9%2C22%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.32%2C2.4e-50%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold504 SAMTools SNP 141197 141197 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C17%2C11%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.00015%2C2.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C201:99 scaffold504 SAMTools SNP 145081 145081 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C30%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C132%2C0:99 scaffold504 SAMTools SNP 145169 145169 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C72%2C0:99 scaffold504 SAMTools SNP 145460 145460 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C54%2C0:99 scaffold504 SAMTools SNP 145502 145502 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold504 SAMTools SNP 145517 145517 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold504 SAMTools SNP 145855 145855 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold504 SAMTools SNP 146353 146353 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold504 SAMTools SNP 152181 152181 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold504 SAMTools SNP 154932 154932 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 154992 154992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold504 SAMTools SNP 155007 155007 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C46%2C48%3BMQ%3D50%3BFQ%3D-153%3BPV4%3D0.12%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold504 SAMTools SNP 155244 155244 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C47%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C4.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C92:95 scaffold504 SAMTools SNP 155298 155298 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C226:99 scaffold504 SAMTools SNP 156201 156201 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold504 SAMTools SNP 176766 176766 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 176862 176862 11.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold504 SAMTools SNP 178349 178349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold504 SAMTools SNP 178873 178873 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold504 SAMTools SNP 178901 178901 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold504 SAMTools SNP 178946 178946 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C110:42 scaffold504 SAMTools SNP 178970 178970 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D444%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold504 SAMTools SNP 180001 180001 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold504 SAMTools SNP 188027 188027 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C3%2C40%3BMQ%3D42%3BFQ%3D225%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 189164 189164 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C30%2C18%2C2%3BMQ%3D48%3BFQ%3D95%3BPV4%3D0.058%2C0.061%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold504 SAMTools SNP 245397 245397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold504 SAMTools SNP 245450 245450 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold504 SAMTools SNP 245556 245556 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C25%2C3%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold504 SAMTools SNP 245585 245585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C18%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold504 SAMTools SNP 245713 245713 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C51%2C1%2C35%3BMQ%3D50%3BFQ%3D215%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold504 SAMTools SNP 245715 245715 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C30%2C51%3BMQ%3D50%3BFQ%3D167%3BPV4%3D3.9e-06%2C0.066%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold504 SAMTools SNP 245767 245767 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C52%2C0%2C32%3BMQ%3D50%3BFQ%3D134%3BPV4%3D3.8e-07%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold504 SAMTools SNP 246314 246314 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold504 SAMTools SNP 246706 246706 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold504 SAMTools SNP 246715 246715 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold504 SAMTools SNP 247069 247069 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold504 SAMTools SNP 247093 247093 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold504 SAMTools SNP 247606 247606 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold504 SAMTools SNP 247627 247627 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold504 SAMTools SNP 247678 247678 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 247699 247699 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 249043 249043 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold504 SAMTools SNP 249046 249046 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.3%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold504 SAMTools SNP 249061 249061 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold504 SAMTools SNP 249088 249088 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 250793 250793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold504 SAMTools SNP 250802 250802 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C18%2C31%2C7%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 250999 250999 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C46%2C15%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.12%2C0.39%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 251383 251383 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C40%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.33%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 251399 251399 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C13%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold504 SAMTools SNP 251527 251527 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C78%2C0:99 scaffold504 SAMTools SNP 260642 260642 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold504 SAMTools SNP 260643 260643 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold504 SAMTools SNP 265078 265078 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C4%2C33%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.43%2C2.7e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold504 SAMTools SNP 265112 265112 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C9%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.31%2C1.9e-20%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C246:50 scaffold504 SAMTools SNP 265237 265237 101 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.25%2C1%2C1%2C6.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C225:99 scaffold504 SAMTools SNP 268498 268498 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C20%2C15%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold504 SAMTools SNP 270500 270500 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00025%2C1.6e-06%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold504 SAMTools SNP 272542 272542 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold504 SAMTools SNP 274545 274545 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C24%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.39%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold504 SAMTools SNP 274602 274602 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C33%2C0:63 scaffold504 SAMTools SNP 275757 275757 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C24%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C105:99 scaffold504 SAMTools SNP 275763 275763 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold504 SAMTools SNP 275771 275771 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold504 SAMTools SNP 276429 276429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 276540 276540 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 276579 276579 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C21%2C59%3BMQ%3D50%3BFQ%3D-179%3BPV4%3D0.076%2C0.49%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C152%2C0:99 scaffold504 SAMTools SNP 278441 278441 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold504 SAMTools SNP 278444 278444 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold504 SAMTools SNP 278713 278713 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold504 SAMTools SNP 280689 280689 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C2%2C3%3BMQ%3D49%3BFQ%3D99%3BPV4%3D0.25%2C1%2C0.041%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold504 SAMTools SNP 280728 280728 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D47%3BFQ%3D80%3BPV4%3D0.43%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C107:99 scaffold504 SAMTools SNP 280767 280767 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold504 SAMTools SNP 280773 280773 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold504 SAMTools SNP 280806 280806 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold504 SAMTools SNP 281099 281099 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold504 SAMTools SNP 281184 281184 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0445%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C0.0094%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C24:27 scaffold504 SAMTools SNP 281361 281361 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C96%2C0:99 scaffold504 SAMTools SNP 281398 281398 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold504 SAMTools SNP 281496 281496 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold504 SAMTools SNP 283012 283012 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold504 SAMTools SNP 283184 283184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold504 SAMTools SNP 283512 283512 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold504 SAMTools SNP 283872 283872 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold504 SAMTools SNP 283877 283877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C14%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold504 SAMTools SNP 285168 285168 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.021%2C9.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold504 SAMTools SNP 285351 285351 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C10%2C166%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C9.5e-210%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 285375 285375 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C10%2C158%2C16%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.41%2C3.8e-217%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold504 SAMTools SNP 285531 285531 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 285546 285546 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C5%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold504 SAMTools SNP 286409 286409 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 286429 286429 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold504 SAMTools SNP 287625 287625 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.016%2C0.0063%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C235:79 scaffold504 SAMTools SNP 287740 287740 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold504 SAMTools SNP 287968 287968 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C11%2C37%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.34%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 288668 288668 61.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C6:9 scaffold504 SAMTools SNP 289767 289767 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C42%2C0:74 scaffold504 SAMTools SNP 289880 289880 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C18%2C82%2C15%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.57%2C8.7e-98%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold504 SAMTools SNP 289957 289957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C16%2C37%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C3.2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold504 SAMTools SNP 292900 292900 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold504 SAMTools SNP 294916 294916 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C158:99 scaffold504 SAMTools SNP 295005 295005 55.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold504 SAMTools SNP 295111 295111 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold504 SAMTools SNP 309287 309287 20.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold504 SAMTools SNP 317212 317212 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold504 SAMTools SNP 317805 317805 53.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold504 SAMTools SNP 318418 318418 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C30%2C0:55 scaffold504 SAMTools SNP 320831 320831 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.096%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold504 SAMTools SNP 322184 322184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold504 SAMTools SNP 323098 323098 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold504 SAMTools SNP 323159 323159 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold504 SAMTools SNP 323297 323297 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.32%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold504 SAMTools SNP 324904 324904 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold504 SAMTools SNP 325144 325144 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C11%2C6%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.62%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold504 SAMTools SNP 325178 325178 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold504 SAMTools SNP 325608 325608 165 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.077%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C140:99 scaffold504 SAMTools SNP 333503 333503 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 334092 334092 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold504 SAMTools SNP 334380 334380 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold504 SAMTools SNP 334396 334396 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold504 SAMTools SNP 334625 334625 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold504 SAMTools SNP 334643 334643 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold504 SAMTools SNP 334893 334893 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold504 SAMTools SNP 335712 335712 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C165:99 scaffold504 SAMTools SNP 340744 340744 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C163:36 scaffold504 SAMTools SNP 341474 341474 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold504 SAMTools SNP 341507 341507 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold504 SAMTools SNP 341702 341702 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold504 SAMTools SNP 344274 344274 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C190:69 scaffold504 SAMTools SNP 348827 348827 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C202:69 scaffold504 SAMTools SNP 348877 348877 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold504 SAMTools SNP 348890 348890 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C38:41 scaffold504 SAMTools SNP 350804 350804 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold504 SAMTools SNP 350810 350810 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold504 SAMTools SNP 351120 351120 21.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold504 SAMTools SNP 393998 393998 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold504 SAMTools SNP 394560 394560 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold504 SAMTools SNP 407159 407159 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold504 SAMTools SNP 407238 407238 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C42%2C0:81 scaffold504 SAMTools SNP 407282 407282 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold504 SAMTools SNP 413063 413063 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold504 SAMTools SNP 417086 417086 15.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold506 SAMTools SNP 10091 10091 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C1%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.65%2C8.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold506 SAMTools SNP 15954 15954 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 15969 15969 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold506 SAMTools SNP 16289 16289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold506 SAMTools SNP 16427 16427 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 16448 16448 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold506 SAMTools SNP 16449 16449 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.022%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold506 SAMTools SNP 16809 16809 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 16845 16845 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 17192 17192 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold506 SAMTools SNP 18010 18010 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold506 SAMTools SNP 18871 18871 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 19037 19037 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 19121 19121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold506 SAMTools SNP 19263 19263 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold506 SAMTools SNP 19314 19314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.6%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold506 SAMTools SNP 19490 19490 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold506 SAMTools SNP 20136 20136 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 20152 20152 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.32%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold506 SAMTools SNP 20184 20184 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold506 SAMTools SNP 20379 20379 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 20399 20399 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 20416 20416 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold506 SAMTools SNP 20433 20433 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold506 SAMTools SNP 20445 20445 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold506 SAMTools SNP 21211 21211 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 21576 21576 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 22134 22134 69.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold506 SAMTools SNP 25125 25125 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C0:3 scaffold506 SAMTools SNP 26239 26239 55.8 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C24%2C86%2C0%2C83:10 scaffold506 SAMTools SNP 35049 35049 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold506 SAMTools SNP 35450 35450 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C86%2C18%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 35513 35513 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 35609 35609 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold506 SAMTools SNP 36172 36172 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C37%2C104%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 36199 36199 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C50%2C56%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 36214 36214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C36%2C66%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C2.1e-07%2C1%2C2.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 36271 36271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C201%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 37726 37726 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C25%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.12%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold506 SAMTools SNP 37744 37744 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold506 SAMTools SNP 38270 38270 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C1%2C10%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.57%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold506 SAMTools SNP 38363 38363 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold506 SAMTools SNP 38375 38375 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold506 SAMTools SNP 38771 38771 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold506 SAMTools SNP 38777 38777 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 39206 39206 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold506 SAMTools SNP 39212 39212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold506 SAMTools SNP 39449 39449 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C114%2C0:99 scaffold506 SAMTools SNP 39845 39845 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 39869 39869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C5%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold506 SAMTools SNP 40028 40028 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold506 SAMTools SNP 40641 40641 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C81%2C35%2C18%3BMQ%3D48%3BFQ%3D225%3BPV4%3D4.9e-05%2C0.34%2C0.039%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 40644 40644 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C81%2C2%2C18%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.64%2C0.13%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold506 SAMTools SNP 41358 41358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.014%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 41857 41857 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C21%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 43052 43052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C13%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 46390 46390 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.31%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 46414 46414 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C2%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.17%2C0.04%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold506 SAMTools SNP 46709 46709 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C38%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold506 SAMTools SNP 53263 53263 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold506 SAMTools SNP 54879 54879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D897%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D489%2C10%2C385%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C2e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 56727 56727 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold506 SAMTools SNP 56809 56809 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C60%2C0:90 scaffold506 SAMTools SNP 56836 56836 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold506 SAMTools SNP 56839 56839 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 57002 57002 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold506 SAMTools SNP 57131 57131 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2753%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1093%2C268%2C1052%2C296%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 57428 57428 76.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D706%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C18%2C0:33 scaffold506 SAMTools SNP 57488 57488 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C19%2C128%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1.4e-154%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 57584 57584 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C227%2C30%2C147%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.46%2C7.7e-220%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold506 SAMTools SNP 57830 57830 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C279%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 58074 58074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C25%2C123%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 58732 58732 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 65068 65068 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 65409 65409 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold506 SAMTools SNP 65475 65475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold506 SAMTools SNP 65502 65502 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold506 SAMTools SNP 66612 66612 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C0.45%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold506 SAMTools SNP 66641 66641 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.57%2C0.45%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold506 SAMTools SNP 68548 68548 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C6%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 69211 69211 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C21%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C247:99 scaffold506 SAMTools SNP 70828 70828 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C57%2C0:99 scaffold506 SAMTools SNP 71014 71014 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C113%2C10%2C51%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.013%2C1.7e-59%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold506 SAMTools SNP 71316 71316 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C51%2C26%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0014%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold506 SAMTools SNP 71320 71320 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C47%2C26%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.00031%2C5.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold506 SAMTools SNP 71737 71737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C173%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 72056 72056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C36%2C43%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 72068 72068 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C104%2C26%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 72465 72465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C32%2C14%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0082%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 73859 73859 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C188%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 79440 79440 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 80039 80039 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 80343 80343 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 94730 94730 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold506 SAMTools SNP 96182 96182 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold506 SAMTools SNP 97665 97665 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C103:37 scaffold506 SAMTools SNP 100194 100194 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 102275 102275 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C45%2C0:72 scaffold506 SAMTools SNP 103301 103301 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold506 SAMTools SNP 104289 104289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold506 SAMTools SNP 104368 104368 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold506 SAMTools SNP 104400 104400 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 106718 106718 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold506 SAMTools SNP 106726 106726 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold506 SAMTools SNP 107073 107073 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.55%2C0.027%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C188:99 scaffold506 SAMTools SNP 111891 111891 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold506 SAMTools SNP 118567 118567 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C15%2C0:27 scaffold506 SAMTools SNP 118652 118652 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.68%2C3.3e-28%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold506 SAMTools SNP 146392 146392 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold506 SAMTools SNP 149823 149823 78.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C15%2C0:27 scaffold506 SAMTools SNP 149834 149834 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold506 SAMTools SNP 149940 149940 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold506 SAMTools SNP 150141 150141 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold506 SAMTools SNP 172569 172569 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C30%2C0:57 scaffold506 SAMTools SNP 173003 173003 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold506 SAMTools SNP 173398 173398 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C19%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1e-06%2C1.5e-12%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C211:64 scaffold506 SAMTools SNP 173929 173929 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C19%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold506 SAMTools SNP 173971 173971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold506 SAMTools SNP 174004 174004 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold506 SAMTools SNP 174458 174458 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold506 SAMTools SNP 174939 174939 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C31%2C25%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.76%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold506 SAMTools SNP 174954 174954 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C6%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.26%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold506 SAMTools SNP 174969 174969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C31%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold506 SAMTools SNP 175320 175320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold506 SAMTools SNP 176088 176088 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 176892 176892 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 176925 176925 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 176949 176949 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold506 SAMTools SNP 177179 177179 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.19%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C253:99 scaffold506 SAMTools SNP 177850 177850 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 177862 177862 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold506 SAMTools SNP 178012 178012 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold506 SAMTools SNP 178066 178066 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C0.0034%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold506 SAMTools SNP 178228 178228 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold506 SAMTools SNP 178269 178269 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C223:99 scaffold506 SAMTools SNP 179339 179339 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C162:30 scaffold506 SAMTools SNP 180000 180000 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 180021 180021 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 180145 180145 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 180847 180847 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold506 SAMTools SNP 180859 180859 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold506 SAMTools SNP 180877 180877 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold506 SAMTools SNP 181986 181986 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 182022 182022 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C81%2C0:99 scaffold506 SAMTools SNP 182139 182139 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C120%2C0:99 scaffold506 SAMTools SNP 182367 182367 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 182412 182412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 182597 182597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold506 SAMTools SNP 182611 182611 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold506 SAMTools SNP 182689 182689 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 182690 182690 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold506 SAMTools SNP 182936 182936 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold506 SAMTools SNP 182956 182956 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold506 SAMTools SNP 184206 184206 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold506 SAMTools SNP 184218 184218 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold506 SAMTools SNP 184849 184849 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C242:99 scaffold506 SAMTools SNP 185045 185045 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.22%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 185528 185528 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.085%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 185696 185696 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.58%2C0.0046%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold506 SAMTools SNP 185720 185720 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C122:99 scaffold506 SAMTools SNP 186190 186190 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C220:99 scaffold506 SAMTools SNP 186414 186414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 186441 186441 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 186723 186723 14.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C12:15 scaffold506 SAMTools SNP 186731 186731 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 187344 187344 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.42%2C2.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C73:55 scaffold506 SAMTools SNP 188290 188290 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 189881 189881 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold506 SAMTools SNP 193324 193324 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold506 SAMTools SNP 193345 193345 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.08%2C0.46%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold506 SAMTools SNP 193459 193459 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C9.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold506 SAMTools SNP 194792 194792 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold506 SAMTools SNP 203610 203610 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold506 SAMTools SNP 203627 203627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold506 SAMTools SNP 207815 207815 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold506 SAMTools SNP 208230 208230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold506 SAMTools SNP 208574 208574 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 208590 208590 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold506 SAMTools SNP 208613 208613 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C30%2C0:57 scaffold506 SAMTools SNP 208638 208638 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 209537 209537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.22%2C0.27%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold506 SAMTools SNP 209624 209624 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold506 SAMTools SNP 210996 210996 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold506 SAMTools SNP 211187 211187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold506 SAMTools SNP 211283 211283 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.17%2C0.018%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold506 SAMTools SNP 212771 212771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 212772 212772 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 212836 212836 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 217482 217482 26.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold506 SAMTools SNP 218491 218491 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0072%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold506 SAMTools SNP 218578 218578 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold506 SAMTools SNP 218590 218590 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold506 SAMTools SNP 219017 219017 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold506 SAMTools SNP 219038 219038 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 219337 219337 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold506 SAMTools SNP 219451 219451 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold506 SAMTools SNP 219532 219532 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C36%2C0:69 scaffold506 SAMTools SNP 219555 219555 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C145:99 scaffold506 SAMTools SNP 219556 219556 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.019%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold506 SAMTools SNP 219580 219580 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold506 SAMTools SNP 219960 219960 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C23:26 scaffold506 SAMTools SNP 220472 220472 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold506 SAMTools SNP 220633 220633 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold506 SAMTools SNP 220693 220693 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 221040 221040 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0155%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold506 SAMTools SNP 221253 221253 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold506 SAMTools SNP 222046 222046 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold506 SAMTools SNP 222064 222064 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 222753 222753 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold506 SAMTools SNP 222771 222771 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold506 SAMTools SNP 223200 223200 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold506 SAMTools SNP 223213 223213 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.56%2C1%2C1%2C5.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold506 SAMTools SNP 223264 223264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C20%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold506 SAMTools SNP 223793 223793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold506 SAMTools SNP 223847 223847 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 223883 223883 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold506 SAMTools SNP 223912 223912 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold506 SAMTools SNP 225019 225019 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 225039 225039 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 225179 225179 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold506 SAMTools SNP 225184 225184 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.49%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold506 SAMTools SNP 225232 225232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold506 SAMTools SNP 228050 228050 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold506 SAMTools SNP 228071 228071 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold506 SAMTools SNP 236857 236857 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 236963 236963 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 238214 238214 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold506 SAMTools SNP 238635 238635 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold506 SAMTools SNP 238701 238701 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 238982 238982 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 243256 243256 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold506 SAMTools SNP 243604 243604 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 243831 243831 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C57%2C0:99 scaffold506 SAMTools SNP 244194 244194 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold506 SAMTools SNP 250860 250860 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 251032 251032 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 270020 270020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 272032 272032 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold506 SAMTools SNP 274403 274403 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 274427 274427 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold506 SAMTools SNP 274462 274462 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 274471 274471 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 275740 275740 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 275821 275821 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold506 SAMTools SNP 276464 276464 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C84%2C0:99 scaffold506 SAMTools SNP 276735 276735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 276756 276756 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 277487 277487 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 278176 278176 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.018%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold506 SAMTools SNP 278698 278698 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold506 SAMTools SNP 278723 278723 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C27%2C0:51 scaffold506 SAMTools SNP 280415 280415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold506 SAMTools SNP 280466 280466 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 285120 285120 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold506 SAMTools SNP 290048 290048 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 290057 290057 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 290126 290126 116 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C4.3e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C55%2C0:99 scaffold506 SAMTools SNP 290153 290153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold506 SAMTools SNP 292745 292745 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C33%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C52%2C0:99 scaffold506 SAMTools SNP 292779 292779 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C33%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C52%2C0:99 scaffold506 SAMTools SNP 310581 310581 217 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C4%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C226%2C0%2C249%2C206%2C246:99 scaffold506 SAMTools SNP 311229 311229 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D55%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.58%2C3.2e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold506 SAMTools SNP 311347 311347 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0026%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C32:35 scaffold506 SAMTools SNP 311521 311521 36.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold506 SAMTools SNP 322864 322864 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C5%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold506 SAMTools SNP 322873 322873 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C5%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0015%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold506 SAMTools SNP 323616 323616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold506 SAMTools SNP 323733 323733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold506 SAMTools SNP 324057 324057 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold506 SAMTools SNP 324165 324165 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold506 SAMTools SNP 324437 324437 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 324526 324526 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C23%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C6.2e-21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C218:99 scaffold506 SAMTools SNP 325786 325786 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 326474 326474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1481%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C493%2C986%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 326504 326504 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1479%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D194%2C141%2C368%2C776%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-17%2C0.0094%2C1%2C1.1e-60;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 327852 327852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D693%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C376%2C316%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 327864 327864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1008%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C473%2C533%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 328113 328113 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D941%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D216%2C291%2C159%2C272%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 330069 330069 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.046%2C0.0094%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold506 SAMTools SNP 330115 330115 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C26%2C41%2C11%3BMQ%3D34%3BFQ%3D225%3BPV4%3D0.0095%2C1%2C0.015%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 333567 333567 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C10%2C25%2C7%3BMQ%3D14%3BFQ%3D26.9%3BPV4%3D1%2C1.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C58:57 scaffold506 SAMTools SNP 334212 334212 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C0%3BMQ%3D48%3BFQ%3D157%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold506 SAMTools SNP 334295 334295 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D30%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C90%2C0:99 scaffold506 SAMTools SNP 335515 335515 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C56%2C21%3BMQ%3D16%3BFQ%3D-243%3BPV4%3D0.28%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C216%2C0:99 scaffold506 SAMTools SNP 335672 335672 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C22%3BMQ%3D13%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C190%2C0:99 scaffold506 SAMTools SNP 337873 337873 7.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D0%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C60%2C0:54 scaffold506 SAMTools SNP 339762 339762 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C60%2C1%2C42%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 339845 339845 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D39%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold506 SAMTools SNP 341065 341065 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C26%3BMQ%3D18%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C144%2C0:99 scaffold506 SAMTools SNP 341222 341222 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C31%3BMQ%3D16%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C175%2C0:99 scaffold506 SAMTools SNP 343423 343423 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C24%3BMQ%3D0%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C111%2C0:63 scaffold506 SAMTools SNP 349132 349132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C46%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold506 SAMTools SNP 349147 349147 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold506 SAMTools SNP 351755 351755 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold506 SAMTools SNP 355877 355877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold506 SAMTools SNP 356923 356923 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold506 SAMTools SNP 357194 357194 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold506 SAMTools SNP 357610 357610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold506 SAMTools SNP 357669 357669 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C48%2C0:93 scaffold506 SAMTools SNP 358097 358097 56.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold506 SAMTools SNP 358670 358670 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C75%2C0:99 scaffold506 SAMTools SNP 358912 358912 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold506 SAMTools SNP 359291 359291 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 359294 359294 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 359342 359342 45.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold506 SAMTools SNP 359360 359360 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 359403 359403 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold506 SAMTools SNP 359862 359862 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold506 SAMTools SNP 360608 360608 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold506 SAMTools SNP 360680 360680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold506 SAMTools SNP 360701 360701 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold506 SAMTools SNP 361135 361135 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.32%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold506 SAMTools SNP 361144 361144 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold506 SAMTools SNP 361646 361646 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold506 SAMTools SNP 361661 361661 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold506 SAMTools SNP 361668 361668 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold506 SAMTools SNP 364375 364375 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold506 SAMTools SNP 369746 369746 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold506 SAMTools SNP 369869 369869 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold506 SAMTools SNP 370179 370179 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 370242 370242 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold506 SAMTools SNP 371550 371550 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.34%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold506 SAMTools SNP 373686 373686 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.43%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C84:43 scaffold506 SAMTools SNP 375939 375939 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C0%2C30%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.0019%2C3.4e-06%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold506 SAMTools SNP 381893 381893 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold506 SAMTools SNP 381934 381934 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold506 SAMTools SNP 382223 382223 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.33%2C0.14%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C247:99 scaffold506 SAMTools SNP 382635 382635 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.072%2C0.00059%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold506 SAMTools SNP 383514 383514 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold506 SAMTools SNP 383559 383559 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.51%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold506 SAMTools SNP 384075 384075 92 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold506 SAMTools SNP 384084 384084 44.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold506 SAMTools SNP 384139 384139 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C93%2C0:99 scaffold506 SAMTools SNP 384340 384340 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C166%2C0:99 scaffold506 SAMTools SNP 384573 384573 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C14%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold506 SAMTools SNP 386002 386002 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1.7e-11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C17:20 scaffold506 SAMTools SNP 387408 387408 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold506 SAMTools SNP 387742 387742 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold506 SAMTools SNP 387803 387803 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold506 SAMTools SNP 387928 387928 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold506 SAMTools SNP 388244 388244 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold506 SAMTools SNP 388542 388542 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 388964 388964 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold506 SAMTools SNP 388988 388988 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00078%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold506 SAMTools SNP 389621 389621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 389627 389627 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold506 SAMTools SNP 389720 389720 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C152:99 scaffold506 SAMTools SNP 390149 390149 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold506 SAMTools SNP 390163 390163 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold506 SAMTools SNP 390179 390179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold506 SAMTools SNP 390193 390193 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold506 SAMTools SNP 390230 390230 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold506 SAMTools SNP 390633 390633 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 394452 394452 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold506 SAMTools SNP 394517 394517 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold506 SAMTools SNP 394526 394526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold506 SAMTools SNP 394533 394533 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold506 SAMTools SNP 395823 395823 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C244:99 scaffold506 SAMTools SNP 396780 396780 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C195:99 scaffold506 SAMTools SNP 397241 397241 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C0.15%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold506 SAMTools SNP 397245 397245 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C0.094%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold506 SAMTools SNP 401028 401028 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold506 SAMTools SNP 403356 403356 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.036%2C7.2e-05%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold506 SAMTools SNP 403422 403422 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.00096%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold506 SAMTools SNP 403446 403446 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.077%2C1.9e-11%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold506 SAMTools SNP 403460 403460 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold506 SAMTools SNP 410838 410838 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C30%2C0:57 scaffold506 SAMTools SNP 410852 410852 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C39%2C0:75 scaffold506 SAMTools SNP 411220 411220 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold506 SAMTools SNP 411496 411496 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 412597 412597 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 414625 414625 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold506 SAMTools SNP 414628 414628 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold506 SAMTools SNP 414887 414887 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.081%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C164:99 scaffold506 SAMTools SNP 414989 414989 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C18%2C0:33 scaffold506 SAMTools SNP 423521 423521 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold506 SAMTools SNP 423540 423540 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold506 SAMTools SNP 427723 427723 11.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold506 SAMTools SNP 427895 427895 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 427927 427927 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 428968 428968 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold506 SAMTools SNP 429002 429002 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold506 SAMTools SNP 432647 432647 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 434052 434052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C0%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold506 SAMTools SNP 434059 434059 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold506 SAMTools SNP 434118 434118 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C58%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C181%2C0:99 scaffold506 SAMTools SNP 447777 447777 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 447938 447938 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 448116 448116 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 448136 448136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 453281 453281 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold506 SAMTools SNP 455506 455506 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 455517 455517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 455550 455550 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.41%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold506 SAMTools SNP 455974 455974 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C61:64 scaffold506 SAMTools SNP 456389 456389 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 456479 456479 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 456495 456495 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 458015 458015 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 458121 458121 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 458126 458126 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 460617 460617 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 461603 461603 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold506 SAMTools SNP 461614 461614 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold506 SAMTools SNP 464261 464261 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D0.33%2C2.3e-05%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C32:35 scaffold506 SAMTools SNP 464882 464882 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold506 SAMTools SNP 471627 471627 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C103:36 scaffold506 SAMTools SNP 471847 471847 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.029%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold506 SAMTools SNP 490145 490145 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C140:37 scaffold506 SAMTools SNP 491591 491591 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold506 SAMTools SNP 518685 518685 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 519075 519075 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold506 SAMTools SNP 543641 543641 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold506 SAMTools SNP 543724 543724 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold506 SAMTools SNP 543877 543877 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold507 SAMTools SNP 50971 50971 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 54866 54866 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold507 SAMTools SNP 55264 55264 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold507 SAMTools SNP 67900 67900 10.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold507 SAMTools SNP 68008 68008 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.47%2C1.4e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C74:58 scaffold507 SAMTools SNP 68069 68069 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold507 SAMTools SNP 69341 69341 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.46%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold507 SAMTools SNP 69403 69403 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold507 SAMTools SNP 69823 69823 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C12%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.046%2C3.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold507 SAMTools SNP 70538 70538 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 71394 71394 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold507 SAMTools SNP 72019 72019 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold507 SAMTools SNP 72090 72090 91.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C15%2C0:27 scaffold507 SAMTools SNP 73294 73294 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 73324 73324 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 73462 73462 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.067%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C177:88 scaffold507 SAMTools SNP 73851 73851 189 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C21%2C0:39 scaffold507 SAMTools SNP 73945 73945 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold507 SAMTools SNP 73969 73969 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold507 SAMTools SNP 74664 74664 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold507 SAMTools SNP 75062 75062 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.0041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C88:57 scaffold507 SAMTools SNP 75186 75186 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C0.2%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C61:64 scaffold507 SAMTools SNP 80541 80541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 80619 80619 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 81265 81265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.088%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 81945 81945 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold507 SAMTools SNP 82309 82309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold507 SAMTools SNP 82443 82443 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold507 SAMTools SNP 84020 84020 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold507 SAMTools SNP 84407 84407 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C121:99 scaffold507 SAMTools SNP 84431 84431 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C196:60 scaffold507 SAMTools SNP 85282 85282 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold507 SAMTools SNP 85321 85321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold507 SAMTools SNP 85336 85336 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold507 SAMTools SNP 85688 85688 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold507 SAMTools SNP 86154 86154 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 86792 86792 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 87173 87173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C3%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 87198 87198 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 88046 88046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C10%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.011%2C0.1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold507 SAMTools SNP 88064 88064 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.023%2C0.39%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold507 SAMTools SNP 88091 88091 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold507 SAMTools SNP 89277 89277 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold507 SAMTools SNP 117647 117647 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold507 SAMTools SNP 129043 129043 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold507 SAMTools SNP 130275 130275 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold507 SAMTools SNP 130301 130301 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 185242 185242 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold507 SAMTools SNP 185366 185366 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold507 SAMTools SNP 195573 195573 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold507 SAMTools SNP 223344 223344 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C51%2C0:99 scaffold507 SAMTools SNP 236973 236973 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D22%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C30%2C0:44 scaffold507 SAMTools SNP 250040 250040 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold507 SAMTools SNP 265025 265025 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold507 SAMTools SNP 285364 285364 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C3%2C0%3BMQ%3D31%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C3.6e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C194:47 scaffold507 SAMTools SNP 286355 286355 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D46%3BFQ%3D20.1%3BPV4%3D0.14%2C0.037%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C147:50 scaffold507 SAMTools SNP 286429 286429 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C39:42 scaffold507 SAMTools SNP 286441 286441 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold507 SAMTools SNP 286458 286458 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold507 SAMTools SNP 286463 286463 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D45%3BFQ%3D69%3BPV4%3D0.24%2C0.069%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C218:99 scaffold507 SAMTools SNP 286481 286481 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C24%2C0:45 scaffold507 SAMTools SNP 287411 287411 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C0.19%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C253:99 scaffold507 SAMTools SNP 287896 287896 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold507 SAMTools SNP 288265 288265 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.22%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C229:99 scaffold507 SAMTools SNP 288882 288882 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold507 SAMTools SNP 288895 288895 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C190:69 scaffold507 SAMTools SNP 288980 288980 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.11%2C0.48%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C185:99 scaffold507 SAMTools SNP 289157 289157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold507 SAMTools SNP 289883 289883 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold507 SAMTools SNP 289899 289899 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold507 SAMTools SNP 289905 289905 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold507 SAMTools SNP 290150 290150 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold507 SAMTools SNP 290203 290203 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 290227 290227 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 290373 290373 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold507 SAMTools SNP 290377 290377 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C74:42 scaffold507 SAMTools SNP 290428 290428 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold507 SAMTools SNP 290893 290893 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.2%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold507 SAMTools SNP 290933 290933 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold507 SAMTools SNP 292713 292713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold507 SAMTools SNP 293508 293508 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.56%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C178:99 scaffold507 SAMTools SNP 293578 293578 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold507 SAMTools SNP 293599 293599 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C18%2C0:33 scaffold507 SAMTools SNP 294613 294613 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C5:57 scaffold507 SAMTools SNP 294661 294661 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold507 SAMTools SNP 310642 310642 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold507 SAMTools SNP 364542 364542 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold507 SAMTools SNP 365182 365182 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold507 SAMTools SNP 365547 365547 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold507 SAMTools SNP 365604 365604 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold507 SAMTools SNP 365634 365634 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold507 SAMTools SNP 365637 365637 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C216:99 scaffold507 SAMTools SNP 365643 365643 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.0082%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C204:99 scaffold507 SAMTools SNP 367052 367052 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold507 SAMTools SNP 367287 367287 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold507 SAMTools SNP 367316 367316 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold507 SAMTools SNP 368505 368505 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold507 SAMTools SNP 369332 369332 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold507 SAMTools SNP 369362 369362 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 369875 369875 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.13%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold507 SAMTools SNP 370551 370551 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.37%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C170:99 scaffold507 SAMTools SNP 370557 370557 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C215:99 scaffold507 SAMTools SNP 370566 370566 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 371352 371352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C18%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.62%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold507 SAMTools SNP 371637 371637 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold507 SAMTools SNP 372012 372012 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold507 SAMTools SNP 372184 372184 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold507 SAMTools SNP 372199 372199 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold507 SAMTools SNP 372211 372211 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.42%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold507 SAMTools SNP 373227 373227 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold507 SAMTools SNP 375666 375666 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold507 SAMTools SNP 375675 375675 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold507 SAMTools SNP 378875 378875 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 379258 379258 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold507 SAMTools SNP 379764 379764 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold507 SAMTools SNP 380559 380559 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold507 SAMTools SNP 380962 380962 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold507 SAMTools SNP 384993 384993 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold507 SAMTools SNP 385015 385015 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold507 SAMTools SNP 385362 385362 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold507 SAMTools SNP 387653 387653 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold507 SAMTools SNP 387710 387710 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold507 SAMTools SNP 388049 388049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold507 SAMTools SNP 388106 388106 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D46%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D2.8e-10%2C5.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold507 SAMTools SNP 388502 388502 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold507 SAMTools SNP 388538 388538 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C8%3BMQ%3D49%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C205:99 scaffold507 SAMTools SNP 388550 388550 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold507 SAMTools SNP 389294 389294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold507 SAMTools SNP 389497 389497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold507 SAMTools SNP 389766 389766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C20%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.081%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 389790 389790 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C13%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 390254 390254 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 390275 390275 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.14%2C0.00084%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold507 SAMTools SNP 390282 390282 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.013%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold507 SAMTools SNP 391261 391261 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold507 SAMTools SNP 400593 400593 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold507 SAMTools SNP 407427 407427 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C21%2C0:39 scaffold507 SAMTools SNP 422939 422939 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1.2e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C119:78 scaffold507 SAMTools SNP 423766 423766 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C9%2C0:16 scaffold507 SAMTools SNP 451402 451402 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.7e-34%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C245:49 scaffold507 SAMTools SNP 564718 564718 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold507 SAMTools SNP 564731 564731 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold507 SAMTools SNP 565280 565280 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.56%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C247:99 scaffold507 SAMTools SNP 565667 565667 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C0%2C20%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold507 SAMTools SNP 565975 565975 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.016%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold507 SAMTools SNP 570129 570129 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold507 SAMTools SNP 570183 570183 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold507 SAMTools SNP 570632 570632 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold507 SAMTools SNP 570653 570653 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold507 SAMTools SNP 570746 570746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold507 SAMTools SNP 571581 571581 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0019%2C1.5e-17%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C232:66 scaffold507 SAMTools SNP 572810 572810 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold507 SAMTools SNP 572924 572924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold507 SAMTools SNP 573374 573374 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.07%2C0.24%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C169:99 scaffold507 SAMTools SNP 574212 574212 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C21%2C0:39 scaffold507 SAMTools SNP 574794 574794 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold507 SAMTools SNP 576576 576576 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.5%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold507 SAMTools SNP 576666 576666 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold507 SAMTools SNP 576672 576672 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold507 SAMTools SNP 576702 576702 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.18%2C0.048%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C221:99 scaffold508 SAMTools SNP 11866 11866 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 11895 11895 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 11953 11953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 11973 11973 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 21561 21561 57.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold508 SAMTools SNP 21906 21906 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold508 SAMTools SNP 27695 27695 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 27698 27698 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 28096 28096 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold508 SAMTools SNP 28364 28364 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 28418 28418 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 29750 29750 51.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold508 SAMTools SNP 29978 29978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold508 SAMTools SNP 30742 30742 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C12%2C0:21 scaffold508 SAMTools SNP 30793 30793 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C153:74 scaffold508 SAMTools SNP 30814 30814 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold508 SAMTools SNP 30823 30823 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold508 SAMTools SNP 31220 31220 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 33965 33965 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C33%2C0:63 scaffold508 SAMTools SNP 33999 33999 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold508 SAMTools SNP 34014 34014 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C189:99 scaffold508 SAMTools SNP 34211 34211 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 34259 34259 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 34320 34320 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold508 SAMTools SNP 34630 34630 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold508 SAMTools SNP 34932 34932 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold508 SAMTools SNP 35171 35171 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold508 SAMTools SNP 35189 35189 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold508 SAMTools SNP 35223 35223 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold508 SAMTools SNP 35444 35444 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold508 SAMTools SNP 35459 35459 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 35948 35948 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 35969 35969 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 36870 36870 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 36892 36892 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold508 SAMTools SNP 37164 37164 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 38408 38408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold508 SAMTools SNP 44845 44845 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.33%2C5.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C143:99 scaffold508 SAMTools SNP 44861 44861 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C3:6 scaffold508 SAMTools SNP 81240 81240 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C2.6e-12%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 81279 81279 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C1%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C0.16%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 85327 85327 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold508 SAMTools SNP 85346 85346 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C24%2C0:45 scaffold508 SAMTools SNP 87473 87473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold508 SAMTools SNP 89203 89203 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.07%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold508 SAMTools SNP 89257 89257 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold508 SAMTools SNP 89612 89612 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C7%2C1%3BMQ%3D49%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold508 SAMTools SNP 94716 94716 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold508 SAMTools SNP 94722 94722 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D48%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold508 SAMTools SNP 107806 107806 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 108405 108405 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold508 SAMTools SNP 108420 108420 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold508 SAMTools SNP 109061 109061 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold508 SAMTools SNP 110381 110381 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold508 SAMTools SNP 110720 110720 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold508 SAMTools SNP 111075 111075 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold508 SAMTools SNP 113195 113195 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C0%2C1%3BMQ%3D18%3BFQ%3D-33%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold508 SAMTools SNP 113616 113616 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold508 SAMTools SNP 116036 116036 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold508 SAMTools SNP 119861 119861 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 119876 119876 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 120111 120111 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 130599 130599 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 130662 130662 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold508 SAMTools SNP 130866 130866 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 133087 133087 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C81%2C0:99 scaffold508 SAMTools SNP 133174 133174 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C29%2C5%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.53%2C2.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold508 SAMTools SNP 133418 133418 56.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold508 SAMTools SNP 133983 133983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold508 SAMTools SNP 136536 136536 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold508 SAMTools SNP 136602 136602 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C24%2C0:45 scaffold508 SAMTools SNP 136614 136614 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold508 SAMTools SNP 137177 137177 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold508 SAMTools SNP 137297 137297 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold508 SAMTools SNP 137449 137449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold508 SAMTools SNP 137704 137704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 143542 143542 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold508 SAMTools SNP 143791 143791 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C14%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold508 SAMTools SNP 145240 145240 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold508 SAMTools SNP 145913 145913 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold508 SAMTools SNP 145922 145922 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C0.24%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C218:57 scaffold508 SAMTools SNP 146446 146446 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 146843 146843 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C235:99 scaffold508 SAMTools SNP 146860 146860 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.4%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C238:99 scaffold508 SAMTools SNP 147040 147040 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C214:99 scaffold508 SAMTools SNP 176985 176985 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold508 SAMTools SNP 191068 191068 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:29%2C0%2C0:7 scaffold508 SAMTools SNP 191545 191545 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold508 SAMTools SNP 192984 192984 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold508 SAMTools SNP 195382 195382 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.31%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 222089 222089 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C2%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.43%2C0.015%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold508 SAMTools SNP 225254 225254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 226079 226079 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C1%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold508 SAMTools SNP 226091 226091 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 226121 226121 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold508 SAMTools SNP 226160 226160 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold508 SAMTools SNP 226193 226193 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold508 SAMTools SNP 226699 226699 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold508 SAMTools SNP 227219 227219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold508 SAMTools SNP 227821 227821 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.3%2C0.019%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold508 SAMTools SNP 227850 227850 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold508 SAMTools SNP 227902 227902 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 228305 228305 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.35%2C2.5e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold508 SAMTools SNP 229486 229486 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold508 SAMTools SNP 230226 230226 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold508 SAMTools SNP 230229 230229 222 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C239%2C10%2C235:99 scaffold508 SAMTools SNP 230283 230283 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold508 SAMTools SNP 230307 230307 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold508 SAMTools SNP 230343 230343 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold508 SAMTools SNP 230702 230702 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C21%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C3e-22%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold508 SAMTools SNP 230798 230798 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.23%2C0.0018%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold508 SAMTools SNP 231407 231407 106 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C19%2C7%2C133%2C0%2C130:21 scaffold508 SAMTools SNP 231431 231431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold508 SAMTools SNP 231925 231925 53.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold508 SAMTools SNP 231945 231945 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 231970 231970 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold508 SAMTools SNP 233296 233296 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold508 SAMTools SNP 233383 233383 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold508 SAMTools SNP 234215 234215 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 234755 234755 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C9%2C30%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold508 SAMTools SNP 234767 234767 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C7%2C29%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.27%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold508 SAMTools SNP 234818 234818 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C15%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 235626 235626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C42%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold508 SAMTools SNP 236786 236786 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C9%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold508 SAMTools SNP 237405 237405 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold508 SAMTools SNP 237432 237432 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C6.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold508 SAMTools SNP 237456 237456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1.3e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 237498 237498 62.3 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C37%2C22%2C88%2C0%2C85:27 scaffold508 SAMTools SNP 237555 237555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C78%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold508 SAMTools SNP 240141 240141 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 240144 240144 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 240578 240578 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D46%3BFQ%3D37%3BPV4%3D0.43%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C159:67 scaffold508 SAMTools SNP 242911 242911 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C72%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold508 SAMTools SNP 243298 243298 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.041%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold508 SAMTools SNP 245687 245687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold508 SAMTools SNP 245723 245723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C81%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold508 SAMTools SNP 246233 246233 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold508 SAMTools SNP 246270 246270 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.044%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold508 SAMTools SNP 247957 247957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C20%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.062%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 251259 251259 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold508 SAMTools SNP 251985 251985 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold508 SAMTools SNP 254551 254551 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.00024%2C3.9e-07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold508 SAMTools SNP 254555 254555 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 254738 254738 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold508 SAMTools SNP 273275 273275 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 273666 273666 21.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold508 SAMTools SNP 273730 273730 29.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold508 SAMTools SNP 279582 279582 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold508 SAMTools SNP 279603 279603 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 4707 4707 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C35:38 scaffold509 SAMTools SNP 31676 31676 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold509 SAMTools SNP 47500 47500 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.00059%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C134:71 scaffold509 SAMTools SNP 47581 47581 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C38:41 scaffold509 SAMTools SNP 47774 47774 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold509 SAMTools SNP 49141 49141 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 49462 49462 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 49464 49464 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold509 SAMTools SNP 49636 49636 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold509 SAMTools SNP 52000 52000 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold509 SAMTools SNP 52003 52003 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold509 SAMTools SNP 56705 56705 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C10%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.11%2C8.5e-13%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold509 SAMTools SNP 56741 56741 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.58%2C7.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C201:99 scaffold509 SAMTools SNP 56792 56792 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold509 SAMTools SNP 57164 57164 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold509 SAMTools SNP 58536 58536 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 58545 58545 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 58572 58572 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 65547 65547 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold509 SAMTools SNP 65632 65632 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C44:47 scaffold509 SAMTools SNP 65733 65733 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 77081 77081 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold509 SAMTools SNP 77172 77172 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 77711 77711 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 87203 87203 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 87207 87207 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 90486 90486 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold509 SAMTools SNP 106451 106451 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 108597 108597 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 109576 109576 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 109619 109619 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold509 SAMTools SNP 109640 109640 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold509 SAMTools SNP 111170 111170 41.8 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C32%2C26%2C72%2C0%2C69:10 scaffold509 SAMTools SNP 111174 111174 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold509 SAMTools SNP 112100 112100 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold509 SAMTools SNP 112127 112127 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold509 SAMTools SNP 112160 112160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold509 SAMTools SNP 113608 113608 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold509 SAMTools SNP 114037 114037 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 155120 155120 32.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold509 SAMTools SNP 157571 157571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C20%2C50%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 157993 157993 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold509 SAMTools SNP 158767 158767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 159097 159097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C63%2C4%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 159127 159127 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 165705 165705 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C66%2C47%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.3%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 165744 165744 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D587%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C66%2C254%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 167777 167777 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold509 SAMTools SNP 169360 169360 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 169378 169378 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 170168 170168 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 193875 193875 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C35%2C11%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C0.14%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 195056 195056 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold509 SAMTools SNP 196759 196759 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold509 SAMTools SNP 196817 196817 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C86:28 scaffold509 SAMTools SNP 196848 196848 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C92:40 scaffold509 SAMTools SNP 198499 198499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C329%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 198514 198514 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C5%2C128%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 200695 200695 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 212408 212408 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C39%2C0:75 scaffold509 SAMTools SNP 213768 213768 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 213807 213807 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C47%2C31%2C47%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.74%2C6.5e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold509 SAMTools SNP 214417 214417 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.017%2C1%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold509 SAMTools SNP 214879 214879 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 215523 215523 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C14%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 215668 215668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 254053 254053 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold509 SAMTools SNP 254415 254415 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.22%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold509 SAMTools SNP 254459 254459 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 254841 254841 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold509 SAMTools SNP 254886 254886 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold509 SAMTools SNP 255165 255165 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.27%2C0.27%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C247:99 scaffold509 SAMTools SNP 255185 255185 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.024%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold509 SAMTools SNP 255372 255372 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 255404 255404 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C0.033%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold509 SAMTools SNP 260548 260548 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 260961 260961 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold509 SAMTools SNP 261471 261471 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold509 SAMTools SNP 261625 261625 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold509 SAMTools SNP 262682 262682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C0.00015%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 263231 263231 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold509 SAMTools SNP 263385 263385 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold509 SAMTools SNP 263546 263546 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold509 SAMTools SNP 263587 263587 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold509 SAMTools SNP 263626 263626 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold509 SAMTools SNP 263782 263782 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold509 SAMTools SNP 263917 263917 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C0%2C14%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.31%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold509 SAMTools SNP 263920 263920 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C0%2C15%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.32%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold509 SAMTools SNP 263944 263944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 264234 264234 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold509 SAMTools SNP 264235 264235 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold509 SAMTools SNP 264265 264265 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.17%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C207:60 scaffold509 SAMTools SNP 264420 264420 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold509 SAMTools SNP 264528 264528 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 265865 265865 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 267173 267173 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D29%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold509 SAMTools SNP 267437 267437 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold509 SAMTools SNP 267461 267461 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold509 SAMTools SNP 267527 267527 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold509 SAMTools SNP 267530 267530 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.24%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold509 SAMTools SNP 267725 267725 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold509 SAMTools SNP 267794 267794 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 268471 268471 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 268699 268699 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold509 SAMTools SNP 268786 268786 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 269013 269013 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 269596 269596 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 269831 269831 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 293438 293438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 323743 323743 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C51%2C0:99 scaffold509 SAMTools SNP 323856 323856 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C5%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.35%2C1.5e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold509 SAMTools SNP 326466 326466 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold509 SAMTools SNP 326968 326968 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C3%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.021%2C5.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold509 SAMTools SNP 326981 326981 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold509 SAMTools SNP 329464 329464 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold509 SAMTools SNP 329485 329485 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold509 SAMTools SNP 329563 329563 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 336169 336169 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold509 SAMTools SNP 336264 336264 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 336265 336265 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 337872 337872 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.28%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold509 SAMTools SNP 337936 337936 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C0.34%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold509 SAMTools SNP 338247 338247 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold509 SAMTools SNP 338308 338308 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold509 SAMTools SNP 338633 338633 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold509 SAMTools SNP 339478 339478 64.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold509 SAMTools SNP 340036 340036 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C30%2C0:57 scaffold509 SAMTools SNP 340144 340144 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C5%3BMQ%3D49%3BFQ%3D47%3BPV4%3D0.12%2C0.023%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold509 SAMTools SNP 342981 342981 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.15%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold509 SAMTools SNP 343298 343298 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold509 SAMTools SNP 343993 343993 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold509 SAMTools SNP 344011 344011 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold509 SAMTools SNP 344035 344035 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C138:72 scaffold509 SAMTools SNP 344952 344952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold509 SAMTools SNP 345335 345335 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold509 SAMTools SNP 345357 345357 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold509 SAMTools SNP 345851 345851 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 345871 345871 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold509 SAMTools SNP 346461 346461 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.31%2C0.037%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold509 SAMTools SNP 346530 346530 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.34%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 346887 346887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.089%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 346915 346915 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold509 SAMTools SNP 346923 346923 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold509 SAMTools SNP 347940 347940 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.44%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C254:99 scaffold509 SAMTools SNP 347966 347966 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold509 SAMTools SNP 348084 348084 134 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C248:99 scaffold509 SAMTools SNP 348538 348538 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold509 SAMTools SNP 348969 348969 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C21%2C0:39 scaffold509 SAMTools SNP 349011 349011 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold509 SAMTools SNP 349077 349077 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold509 SAMTools SNP 349714 349714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.052%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold509 SAMTools SNP 351084 351084 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.15%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold509 SAMTools SNP 352184 352184 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C4%3BMQ%3D45%3BFQ%3D34%3BPV4%3D0.55%2C0.00063%2C1%2C4.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C233:64 scaffold509 SAMTools SNP 353180 353180 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D13%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C90%2C0:99 scaffold509 SAMTools SNP 353207 353207 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D36%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold509 SAMTools SNP 354759 354759 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D37%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold509 SAMTools SNP 355376 355376 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold509 SAMTools SNP 355379 355379 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold509 SAMTools SNP 355434 355434 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.5%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold509 SAMTools SNP 355889 355889 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold509 SAMTools SNP 356296 356296 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold509 SAMTools SNP 356322 356322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold509 SAMTools SNP 356429 356429 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C48%2C0:93 scaffold509 SAMTools SNP 356468 356468 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.35%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C127:34 scaffold509 SAMTools SNP 356528 356528 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold509 SAMTools SNP 356933 356933 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold509 SAMTools SNP 357029 357029 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.21%2C0.2%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold509 SAMTools SNP 357570 357570 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold509 SAMTools SNP 357583 357583 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold509 SAMTools SNP 357591 357591 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold509 SAMTools SNP 358646 358646 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 358691 358691 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 359162 359162 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C42%2C0:81 scaffold509 SAMTools SNP 359234 359234 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C33%2C0:63 scaffold509 SAMTools SNP 359683 359683 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold509 SAMTools SNP 359689 359689 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 360203 360203 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold509 SAMTools SNP 360222 360222 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold509 SAMTools SNP 360224 360224 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold509 SAMTools SNP 360233 360233 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 360251 360251 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 360296 360296 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold509 SAMTools SNP 360856 360856 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 361746 361746 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 361749 361749 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 361830 361830 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold509 SAMTools SNP 365969 365969 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold509 SAMTools SNP 365975 365975 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold509 SAMTools SNP 366041 366041 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold509 SAMTools SNP 370597 370597 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.2%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold509 SAMTools SNP 372066 372066 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold509 SAMTools SNP 372087 372087 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 372202 372202 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 372203 372203 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 379877 379877 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold509 SAMTools SNP 403419 403419 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 403480 403480 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 403766 403766 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 403780 403780 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C115%2C0%2C70%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.0047%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold509 SAMTools SNP 404516 404516 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.12%2C0.42%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold509 SAMTools SNP 405367 405367 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold509 SAMTools SNP 405385 405385 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold509 SAMTools SNP 405651 405651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C4%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold509 SAMTools SNP 405660 405660 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C1%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold509 SAMTools SNP 405708 405708 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C12%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 406859 406859 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C52%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0095%2C0.087%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 407217 407217 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C10%2C31%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.062%2C0.06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold509 SAMTools SNP 407232 407232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 407277 407277 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C35%2C22%2C24%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.7%2C1.4e-38%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold509 SAMTools SNP 407328 407328 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C58%2C14%2C23%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.84%2C2e-40%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold509 SAMTools SNP 407455 407455 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold509 SAMTools SNP 415704 415704 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 415707 415707 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold509 SAMTools SNP 416156 416156 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C236:99 scaffold509 SAMTools SNP 416539 416539 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.35%2C0.003%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C223:99 scaffold509 SAMTools SNP 417054 417054 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C223:96 scaffold509 SAMTools SNP 417656 417656 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold509 SAMTools SNP 417665 417665 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold509 SAMTools SNP 417986 417986 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C93:96 scaffold509 SAMTools SNP 418900 418900 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold509 SAMTools SNP 418923 418923 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold509 SAMTools SNP 419609 419609 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold509 SAMTools SNP 419760 419760 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold509 SAMTools SNP 419775 419775 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold509 SAMTools SNP 420330 420330 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold509 SAMTools SNP 420366 420366 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold509 SAMTools SNP 420701 420701 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold509 SAMTools SNP 420740 420740 68 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C47%2C38%2C97%2C0%2C94:16 scaffold509 SAMTools SNP 420752 420752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold509 SAMTools SNP 423038 423038 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold509 SAMTools SNP 423066 423066 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold509 SAMTools SNP 423085 423085 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold509 SAMTools SNP 424115 424115 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold509 SAMTools SNP 425209 425209 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C88:30 scaffold509 SAMTools SNP 425623 425623 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold509 SAMTools SNP 427729 427729 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold509 SAMTools SNP 428838 428838 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C0.047%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold509 SAMTools SNP 428877 428877 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold509 SAMTools SNP 429210 429210 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold509 SAMTools SNP 429786 429786 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C127:28 scaffold509 SAMTools SNP 430250 430250 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold509 SAMTools SNP 430289 430289 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C18%2C0:33 scaffold509 SAMTools SNP 430649 430649 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold509 SAMTools SNP 430655 430655 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold509 SAMTools SNP 431208 431208 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold509 SAMTools SNP 431223 431223 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 431828 431828 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 431871 431871 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold509 SAMTools SNP 431879 431879 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold509 SAMTools SNP 432626 432626 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 432666 432666 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 439231 439231 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold509 SAMTools SNP 439250 439250 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold509 SAMTools SNP 439490 439490 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold509 SAMTools SNP 443915 443915 116 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold509 SAMTools SNP 443942 443942 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C18%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.14%2C0.069%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold509 SAMTools SNP 444189 444189 46.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold509 SAMTools SNP 444485 444485 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C28%2C13%2C22%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.28%2C4.6e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold509 SAMTools SNP 445152 445152 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold509 SAMTools SNP 472742 472742 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold509 SAMTools SNP 477453 477453 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold509 SAMTools SNP 477522 477522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold509 SAMTools SNP 478529 478529 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold509 SAMTools SNP 483471 483471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 483543 483543 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold509 SAMTools SNP 487019 487019 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.33%2C0.22%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C217:99 scaffold509 SAMTools SNP 487046 487046 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.36%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C146:99 scaffold509 SAMTools SNP 487067 487067 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold509 SAMTools SNP 487194 487194 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 487215 487215 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold509 SAMTools SNP 487266 487266 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold509 SAMTools SNP 488242 488242 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.6e-07%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C74:39 scaffold509 SAMTools SNP 488299 488299 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold509 SAMTools SNP 488745 488745 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold509 SAMTools SNP 488763 488763 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 489792 489792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold509 SAMTools SNP 490387 490387 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold509 SAMTools SNP 490629 490629 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 491873 491873 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold509 SAMTools SNP 491885 491885 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0.064%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold509 SAMTools SNP 497478 497478 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 498925 498925 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 498940 498940 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold509 SAMTools SNP 498986 498986 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold509 SAMTools SNP 499544 499544 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C208:59 scaffold509 SAMTools SNP 499617 499617 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold509 SAMTools SNP 500140 500140 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold509 SAMTools SNP 501815 501815 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold509 SAMTools SNP 501877 501877 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold509 SAMTools SNP 505961 505961 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C57%2C0:99 scaffold509 SAMTools SNP 506041 506041 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0042%2C5.5e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold509 SAMTools SNP 506661 506661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 508397 508397 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C78%2C65%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.1e-06%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold509 SAMTools SNP 508490 508490 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C64%2C0%2C34%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.029%2C9.7e-19%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold509 SAMTools SNP 508496 508496 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C63%2C0%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.35%2C0.43%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold509 SAMTools SNP 508839 508839 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C10%2C34%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.18%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C136:99 scaffold509 SAMTools SNP 509031 509031 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C27%2C0:51 scaffold509 SAMTools SNP 509051 509051 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold509 SAMTools SNP 509589 509589 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold509 SAMTools SNP 511031 511031 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold509 SAMTools SNP 511876 511876 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C21%2C23%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.0002%2C2.9e-48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C193:99 scaffold509 SAMTools SNP 512015 512015 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C166%2C0:99 scaffold509 SAMTools SNP 512259 512259 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.2%2C5.4e-05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold509 SAMTools SNP 513325 513325 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold509 SAMTools SNP 515926 515926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold509 SAMTools SNP 516496 516496 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C60%2C4%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.31%2C1.3e-41%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold509 SAMTools SNP 516860 516860 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C29%2C159%2C37%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D1.6e-18%2C0.099%2C1%2C9.9e-12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold509 SAMTools SNP 518409 518409 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 518699 518699 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold509 SAMTools SNP 519741 519741 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold509 SAMTools SNP 519850 519850 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C3%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C148%2C0:99 scaffold509 SAMTools SNP 519945 519945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C469%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold509 SAMTools SNP 525645 525645 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold510 SAMTools SNP 34061 34061 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 34238 34238 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 50498 50498 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C63:31 scaffold510 SAMTools SNP 51941 51941 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold510 SAMTools SNP 52151 52151 13.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold510 SAMTools SNP 54972 54972 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 56278 56278 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C248:99 scaffold510 SAMTools SNP 56293 56293 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.095%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold510 SAMTools SNP 57541 57541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold510 SAMTools SNP 57631 57631 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold510 SAMTools SNP 57649 57649 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold510 SAMTools SNP 58369 58369 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold510 SAMTools SNP 58390 58390 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold510 SAMTools SNP 59054 59054 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold510 SAMTools SNP 59078 59078 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.12%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold510 SAMTools SNP 59096 59096 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C9.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold510 SAMTools SNP 59129 59129 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C231:99 scaffold510 SAMTools SNP 65054 65054 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 65069 65069 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 66171 66171 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold510 SAMTools SNP 66201 66201 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold510 SAMTools SNP 67429 67429 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold510 SAMTools SNP 67453 67453 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold510 SAMTools SNP 67462 67462 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold510 SAMTools SNP 67471 67471 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.37%2C0.18%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold510 SAMTools SNP 67492 67492 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.084%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold510 SAMTools SNP 68365 68365 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.24%2C0.041%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold510 SAMTools SNP 68534 68534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 68617 68617 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.00072%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 69481 69481 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C4%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C0.36%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 69490 69490 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold510 SAMTools SNP 69502 69502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C32%2C2%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.0039%2C0.0083%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold510 SAMTools SNP 69845 69845 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C18%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold510 SAMTools SNP 70001 70001 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C3.6e-15%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C101:83 scaffold510 SAMTools SNP 70022 70022 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C2.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold510 SAMTools SNP 70597 70597 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 73632 73632 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold510 SAMTools SNP 73668 73668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold510 SAMTools SNP 73764 73764 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 76249 76249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C18%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold510 SAMTools SNP 77847 77847 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 78063 78063 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold510 SAMTools SNP 78084 78084 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold510 SAMTools SNP 78137 78137 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold510 SAMTools SNP 80025 80025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold510 SAMTools SNP 80335 80335 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold510 SAMTools SNP 80431 80431 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold510 SAMTools SNP 81318 81318 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C0%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold510 SAMTools SNP 82148 82148 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold510 SAMTools SNP 84497 84497 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C46%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C232%2C0:99 scaffold510 SAMTools SNP 84568 84568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold510 SAMTools SNP 169346 169346 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold510 SAMTools SNP 170199 170199 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C1%2C13%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.66%2C5.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold510 SAMTools SNP 171259 171259 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C8.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold510 SAMTools SNP 173756 173756 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.029%2C6.5e-14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C98:99 scaffold510 SAMTools SNP 224574 224574 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold510 SAMTools SNP 225305 225305 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold510 SAMTools SNP 225371 225371 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold510 SAMTools SNP 225425 225425 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold510 SAMTools SNP 225976 225976 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 226033 226033 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 226967 226967 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold510 SAMTools SNP 226997 226997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 227834 227834 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 233153 233153 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C72%2C0:99 scaffold510 SAMTools SNP 233808 233808 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold510 SAMTools SNP 236051 236051 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C84%2C0:99 scaffold510 SAMTools SNP 288266 288266 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C218:39 scaffold510 SAMTools SNP 288336 288336 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold510 SAMTools SNP 289537 289537 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.12%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C177:99 scaffold510 SAMTools SNP 305785 305785 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 316257 316257 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold510 SAMTools SNP 316323 316323 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold510 SAMTools SNP 327397 327397 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold510 SAMTools SNP 327499 327499 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold510 SAMTools SNP 329353 329353 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold510 SAMTools SNP 330090 330090 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1.9e-05%2C1%2C1%2C1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C222:62 scaffold510 SAMTools SNP 330955 330955 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 331432 331432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold510 SAMTools SNP 338385 338385 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C9.8e-14%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C152:42 scaffold510 SAMTools SNP 338441 338441 222 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0%2C226%2C21%2C220:99 scaffold510 SAMTools SNP 340739 340739 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C154%2C1%2C191%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 340785 340785 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C17%3BMQ%3D44%3BFQ%3D162%3BPV4%3D1%2C1%2C0.022%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C189:99 scaffold510 SAMTools SNP 342886 342886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold510 SAMTools SNP 343302 343302 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold510 SAMTools SNP 347677 347677 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 348752 348752 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold510 SAMTools SNP 349262 349262 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold510 SAMTools SNP 349272 349272 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.53%2C0.04%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold510 SAMTools SNP 349507 349507 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold510 SAMTools SNP 349840 349840 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C7.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C239:64 scaffold510 SAMTools SNP 352508 352508 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold510 SAMTools SNP 352517 352517 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold510 SAMTools SNP 352565 352565 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold510 SAMTools SNP 353157 353157 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold510 SAMTools SNP 354048 354048 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold510 SAMTools SNP 356774 356774 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.44%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C122:99 scaffold510 SAMTools SNP 357526 357526 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold510 SAMTools SNP 357732 357732 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold510 SAMTools SNP 357963 357963 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold510 SAMTools SNP 360093 360093 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 18355 18355 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D46%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold513 SAMTools SNP 19990 19990 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D48%3BFQ%3D190%3BPV4%3D1%2C1%2C0.17%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C245:99 scaffold513 SAMTools SNP 20021 20021 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D45%3BFQ%3D107%3BPV4%3D1%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C148:99 scaffold513 SAMTools SNP 20611 20611 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D47%3BFQ%3D92%3BPV4%3D1%2C1%2C0.15%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C171:99 scaffold513 SAMTools SNP 21993 21993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold513 SAMTools SNP 22033 22033 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold513 SAMTools SNP 22509 22509 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.015%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold513 SAMTools SNP 22835 22835 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold513 SAMTools SNP 23053 23053 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold513 SAMTools SNP 23165 23165 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold513 SAMTools SNP 23585 23585 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold513 SAMTools SNP 177434 177434 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C14%2C4%3BMQ%3D45%3BFQ%3D217%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold513 SAMTools SNP 178124 178124 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C12%2C13%2C1%3BMQ%3D47%3BFQ%3D109%3BPV4%3D0.15%2C0.35%2C9.2e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold513 SAMTools SNP 178142 178142 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C13%2C3%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.073%2C0.42%2C0.00031%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 183349 183349 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C44%2C66%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.0059%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 183949 183949 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold513 SAMTools SNP 186544 186544 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold513 SAMTools SNP 187389 187389 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 187478 187478 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.021%2C1.2e-28%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold513 SAMTools SNP 188481 188481 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold513 SAMTools SNP 190280 190280 34 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.57%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold513 SAMTools SNP 190786 190786 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold513 SAMTools SNP 191077 191077 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold513 SAMTools SNP 192369 192369 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.23%2C0.00052%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold513 SAMTools SNP 192643 192643 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold513 SAMTools SNP 192795 192795 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.29%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C82:85 scaffold513 SAMTools SNP 193171 193171 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold513 SAMTools SNP 196044 196044 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C108:99 scaffold513 SAMTools SNP 196681 196681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold513 SAMTools SNP 196747 196747 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C63:66 scaffold513 SAMTools SNP 197451 197451 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C11%2C3%3BMQ%3D41%3BFQ%3D34%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold513 SAMTools SNP 198070 198070 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C24%2C3%2C12%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D0.34%2C1.7e-16%2C1.9e-05%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold513 SAMTools SNP 198499 198499 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D42%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C169:99 scaffold513 SAMTools SNP 199373 199373 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D47%3BFQ%3D72%3BPV4%3D0.52%2C1%2C0.26%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C99:99 scaffold513 SAMTools SNP 199374 199374 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D36%3BPV4%3D0.13%2C1%2C0.32%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C63:66 scaffold513 SAMTools SNP 202104 202104 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold513 SAMTools SNP 202107 202107 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold513 SAMTools SNP 202909 202909 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.14%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 203313 203313 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold513 SAMTools SNP 203328 203328 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 205489 205489 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold513 SAMTools SNP 205586 205586 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold513 SAMTools SNP 206449 206449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 206475 206475 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.54%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold513 SAMTools SNP 206523 206523 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.7e-10%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C193:28 scaffold513 SAMTools SNP 206542 206542 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.17%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C149:99 scaffold513 SAMTools SNP 206563 206563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 207790 207790 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.035%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 208085 208085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold513 SAMTools SNP 208728 208728 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold513 SAMTools SNP 208883 208883 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 208923 208923 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold513 SAMTools SNP 209057 209057 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 209086 209086 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold513 SAMTools SNP 209640 209640 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C34%2C86%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 210045 210045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D423%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C356%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 210089 210089 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C123%2C27%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 210680 210680 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C15%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 210791 210791 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 210818 210818 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C8:11 scaffold513 SAMTools SNP 211004 211004 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold513 SAMTools SNP 211232 211232 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold513 SAMTools SNP 211256 211256 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.31%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold513 SAMTools SNP 211281 211281 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 211476 211476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold513 SAMTools SNP 211502 211502 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.53%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold513 SAMTools SNP 211917 211917 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold513 SAMTools SNP 212120 212120 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.083%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold513 SAMTools SNP 212231 212231 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C117%2C0:99 scaffold513 SAMTools SNP 212351 212351 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C50%2C10%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1.7e-05%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold513 SAMTools SNP 212354 212354 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C9%2C50%3BMQ%3D50%3BFQ%3D182%3BPV4%3D3.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold513 SAMTools SNP 212640 212640 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C29%2C49%3BMQ%3D50%3BFQ%3D-127%3BPV4%3D0.55%2C2.8e-38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C100%2C0:99 scaffold513 SAMTools SNP 212645 212645 49.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold513 SAMTools SNP 212763 212763 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D298%2C3%2C128%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-07%2C1.8e-12%2C1%2C1.3e-22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 212886 212886 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D197%2C9%2C85%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C2.3e-23%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 212901 212901 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C91%2C96%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 213171 213171 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C55%2C47%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-05%2C0.44%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 213700 213700 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 213708 213708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold513 SAMTools SNP 213786 213786 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.14%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold513 SAMTools SNP 213815 213815 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 214107 214107 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold513 SAMTools SNP 214112 214112 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.2e-21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold513 SAMTools SNP 216861 216861 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold513 SAMTools SNP 217075 217075 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold513 SAMTools SNP 217171 217171 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 217572 217572 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C13%2C46%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C5.9e-06%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 217656 217656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.019%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 217659 217659 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C4%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 217787 217787 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C51%2C7%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.48%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 218065 218065 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 219236 219236 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.00077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold513 SAMTools SNP 219272 219272 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0023%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold513 SAMTools SNP 219290 219290 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.3%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold513 SAMTools SNP 223420 223420 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold513 SAMTools SNP 228127 228127 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold513 SAMTools SNP 231673 231673 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C248:99 scaffold513 SAMTools SNP 231701 231701 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.24%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C252:99 scaffold513 SAMTools SNP 233318 233318 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold513 SAMTools SNP 233781 233781 213 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold513 SAMTools SNP 233792 233792 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 234190 234190 53.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold513 SAMTools SNP 234224 234224 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 234583 234583 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold513 SAMTools SNP 234599 234599 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold513 SAMTools SNP 234950 234950 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.3%2C0.098%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold513 SAMTools SNP 235186 235186 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 235262 235262 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C6.2e-20%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C183:99 scaffold513 SAMTools SNP 235851 235851 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 235880 235880 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 236573 236573 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C10%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.22%2C0.17%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold513 SAMTools SNP 236582 236582 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold513 SAMTools SNP 236808 236808 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.011%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 239958 239958 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold513 SAMTools SNP 239959 239959 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold513 SAMTools SNP 240594 240594 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D47%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold513 SAMTools SNP 240615 240615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C9%2C14%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.024%2C1%2C0.46%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 242425 242425 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.33%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold513 SAMTools SNP 242691 242691 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C41%2C13%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.13%2C0.32%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold513 SAMTools SNP 242702 242702 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C56%2C14%2C13%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.12%2C0.44%2C0.15%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold513 SAMTools SNP 244096 244096 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D43%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold513 SAMTools SNP 267283 267283 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 267346 267346 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold513 SAMTools SNP 268869 268869 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold513 SAMTools SNP 277028 277028 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.55%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold513 SAMTools SNP 277058 277058 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.13%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold513 SAMTools SNP 278959 278959 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 279597 279597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 279627 279627 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C11%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.18%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold513 SAMTools SNP 279633 279633 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C64%2C0%2C18%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.27%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold513 SAMTools SNP 281519 281519 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C65%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.16%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C165:99 scaffold513 SAMTools SNP 281558 281558 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 284458 284458 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C233:99 scaffold513 SAMTools SNP 286241 286241 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C242:99 scaffold513 SAMTools SNP 286279 286279 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold513 SAMTools SNP 286282 286282 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold513 SAMTools SNP 286285 286285 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C38:41 scaffold513 SAMTools SNP 286291 286291 194 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold513 SAMTools SNP 287365 287365 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C1%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 287371 287371 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C75%2C1%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 287401 287401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C1%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 288575 288575 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C10%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold513 SAMTools SNP 288719 288719 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.094%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold513 SAMTools SNP 289075 289075 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold513 SAMTools SNP 289891 289891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 295042 295042 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold513 SAMTools SNP 295045 295045 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold513 SAMTools SNP 319189 319189 34.3 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0%2C64%2C5%2C61:27 scaffold513 SAMTools SNP 319654 319654 28.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold513 SAMTools SNP 319753 319753 13.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold513 SAMTools SNP 319765 319765 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D534%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold513 SAMTools SNP 319900 319900 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C2.1e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C85:63 scaffold513 SAMTools SNP 320488 320488 27.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold513 SAMTools SNP 342829 342829 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold513 SAMTools SNP 347184 347184 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold513 SAMTools SNP 349350 349350 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold513 SAMTools SNP 350359 350359 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C72%2C1%2C35%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.0076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold513 SAMTools SNP 350408 350408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold513 SAMTools SNP 350412 350412 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C0.14%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 350512 350512 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C99%2C0:99 scaffold513 SAMTools SNP 356507 356507 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold513 SAMTools SNP 357241 357241 84.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold513 SAMTools SNP 360185 360185 21.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold513 SAMTools SNP 360335 360335 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold513 SAMTools SNP 360968 360968 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C24%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.61%2C4.8e-39%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold513 SAMTools SNP 361581 361581 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C42%2C0:81 scaffold513 SAMTools SNP 362134 362134 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold513 SAMTools SNP 362703 362703 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold513 SAMTools SNP 362707 362707 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C228:99 scaffold513 SAMTools SNP 365142 365142 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C221:99 scaffold513 SAMTools SNP 365477 365477 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C17%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D8.3e-05%2C8.2e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold513 SAMTools SNP 367519 367519 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold513 SAMTools SNP 367615 367615 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C246:99 scaffold513 SAMTools SNP 367864 367864 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 368302 368302 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C40%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold513 SAMTools SNP 368587 368587 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0330%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold513 SAMTools SNP 368623 368623 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.21%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C179:99 scaffold513 SAMTools SNP 369001 369001 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C144:99 scaffold513 SAMTools SNP 369016 369016 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C160:99 scaffold513 SAMTools SNP 369052 369052 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.46%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold513 SAMTools SNP 369297 369297 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.22%2C0.16%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold513 SAMTools SNP 369363 369363 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C45%2C0:87 scaffold513 SAMTools SNP 371174 371174 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold513 SAMTools SNP 372504 372504 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold513 SAMTools SNP 372550 372550 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.24%2C0.15%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C200:99 scaffold513 SAMTools SNP 372725 372725 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C21%2C0:39 scaffold513 SAMTools SNP 372728 372728 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold513 SAMTools SNP 373245 373245 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold513 SAMTools SNP 373737 373737 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold513 SAMTools SNP 376718 376718 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 383453 383453 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 383471 383471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 383794 383794 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold513 SAMTools SNP 383974 383974 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold513 SAMTools SNP 384184 384184 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold513 SAMTools SNP 384293 384293 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 385686 385686 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 386273 386273 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold513 SAMTools SNP 386285 386285 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold513 SAMTools SNP 386317 386317 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold513 SAMTools SNP 388709 388709 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold513 SAMTools SNP 388721 388721 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold513 SAMTools SNP 389695 389695 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.31%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold513 SAMTools SNP 390033 390033 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold513 SAMTools SNP 390460 390460 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 390484 390484 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 391168 391168 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 393284 393284 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C74:77 scaffold513 SAMTools SNP 393746 393746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C226%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.045%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 394057 394057 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C8%2C214%2C10%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.62%2C6e-312%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold513 SAMTools SNP 394219 394219 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C116%2C26%2C55%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.11%2C2.6e-183%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold513 SAMTools SNP 394873 394873 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C32%3BMQ%3D9%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C217%2C0:81 scaffold513 SAMTools SNP 395442 395442 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C43%3BMQ%3D16%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C247%2C0:99 scaffold513 SAMTools SNP 398188 398188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C168%2C62%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 399130 399130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D792%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C231%2C31%2C192%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.8e-12%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 399202 399202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C70%2C54%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 399601 399601 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C59%2C19%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 399613 399613 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C137%2C0%2C72%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.18%2C0.11%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold513 SAMTools SNP 399619 399619 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C72%2C10%2C151%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.034%2C0.27%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold513 SAMTools SNP 399622 399622 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C146%2C0%2C72%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold513 SAMTools SNP 400708 400708 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C41:44 scaffold513 SAMTools SNP 408450 408450 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold513 SAMTools SNP 408562 408562 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C225:54 scaffold513 SAMTools SNP 413720 413720 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D8.63%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C35:38 scaffold513 SAMTools SNP 413875 413875 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C73%2C2%2C38%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.33%2C6e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold513 SAMTools SNP 415141 415141 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C202:47 scaffold513 SAMTools SNP 423436 423436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C48%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 423449 423449 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0056%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold513 SAMTools SNP 423756 423756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C31%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 423813 423813 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C9.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 423888 423888 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 424232 424232 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C45%2C55%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 424238 424238 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C23%2C45%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 424292 424292 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C8%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 425174 425174 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold513 SAMTools SNP 425192 425192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold513 SAMTools SNP 425258 425258 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold513 SAMTools SNP 425652 425652 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 425742 425742 55.8 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold513 SAMTools SNP 426718 426718 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold513 SAMTools SNP 426809 426809 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C2%2C3%3BMQ%3D49%3BFQ%3D107%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold513 SAMTools SNP 426814 426814 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C2%2C3%3BMQ%3D49%3BFQ%3D107%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold513 SAMTools SNP 427474 427474 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold513 SAMTools SNP 429132 429132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold513 SAMTools SNP 429133 429133 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D6.4e-05%2C0.059%2C1%2C5.9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold513 SAMTools SNP 429144 429144 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C22%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1.6e-07%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold513 SAMTools SNP 429431 429431 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C2%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.012%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold513 SAMTools SNP 429590 429590 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C9%2C52%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 430100 430100 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C85%2C1%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 430464 430464 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 430472 430472 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C20%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0063%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold513 SAMTools SNP 430511 430511 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C14%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 430782 430782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C38%2C21%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 431010 431010 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold513 SAMTools SNP 431219 431219 11.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold513 SAMTools SNP 435130 435130 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C43:38 scaffold513 SAMTools SNP 435156 435156 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold513 SAMTools SNP 438527 438527 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 439099 439099 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 447856 447856 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D39.2%3BPV4%3D0.4%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C74:69 scaffold513 SAMTools SNP 447860 447860 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.46%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C121:46 scaffold513 SAMTools SNP 447903 447903 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold513 SAMTools SNP 448202 448202 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C245:99 scaffold513 SAMTools SNP 448229 448229 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.12%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold513 SAMTools SNP 448553 448553 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold513 SAMTools SNP 448793 448793 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.2%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C237:99 scaffold513 SAMTools SNP 448877 448877 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 449336 449336 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold513 SAMTools SNP 449341 449341 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold513 SAMTools SNP 449401 449401 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.043%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C190:57 scaffold513 SAMTools SNP 449503 449503 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C36%2C0:69 scaffold513 SAMTools SNP 449755 449755 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold513 SAMTools SNP 449776 449776 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold513 SAMTools SNP 449796 449796 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold513 SAMTools SNP 449904 449904 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 450553 450553 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold513 SAMTools SNP 450915 450915 105 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C3%3BMQ%3D37%3BFQ%3D93.8%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C121:99 scaffold513 SAMTools SNP 457235 457235 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold513 SAMTools SNP 457585 457585 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold513 SAMTools SNP 457697 457697 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold513 SAMTools SNP 458125 458125 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.024%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold513 SAMTools SNP 458276 458276 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.52%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold513 SAMTools SNP 459008 459008 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold513 SAMTools SNP 459688 459688 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold513 SAMTools SNP 460017 460017 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold513 SAMTools SNP 460157 460157 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C149:42 scaffold513 SAMTools SNP 461055 461055 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 461337 461337 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 461338 461338 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 461624 461624 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.46%2C0.0051%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold513 SAMTools SNP 461691 461691 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold513 SAMTools SNP 463289 463289 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 463927 463927 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold513 SAMTools SNP 464764 464764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold513 SAMTools SNP 465393 465393 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold513 SAMTools SNP 465419 465419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold513 SAMTools SNP 465495 465495 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C33%2C0:53 scaffold513 SAMTools SNP 465514 465514 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold513 SAMTools SNP 465621 465621 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold513 SAMTools SNP 465792 465792 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.027%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold513 SAMTools SNP 465867 465867 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold513 SAMTools SNP 466238 466238 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold513 SAMTools SNP 466274 466274 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 466286 466286 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold513 SAMTools SNP 466456 466456 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold513 SAMTools SNP 466465 466465 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold513 SAMTools SNP 466696 466696 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.05%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold513 SAMTools SNP 466704 466704 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold513 SAMTools SNP 466923 466923 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold513 SAMTools SNP 466944 466944 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold513 SAMTools SNP 467118 467118 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold513 SAMTools SNP 470086 470086 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C2%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 476272 476272 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold513 SAMTools SNP 476438 476438 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold513 SAMTools SNP 479345 479345 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C54%2C11%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.0002%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 479415 479415 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C45%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C2.1e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold513 SAMTools SNP 480868 480868 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold513 SAMTools SNP 484950 484950 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold513 SAMTools SNP 485030 485030 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C247:99 scaffold513 SAMTools SNP 485717 485717 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold513 SAMTools SNP 485998 485998 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C30%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C129%2C0:99 scaffold513 SAMTools SNP 490949 490949 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold513 SAMTools SNP 490972 490972 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold513 SAMTools SNP 491026 491026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold513 SAMTools SNP 491297 491297 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.44%2C0.15%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C68:71 scaffold513 SAMTools SNP 491343 491343 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C32:35 scaffold513 SAMTools SNP 495087 495087 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 495121 495121 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 496511 496511 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.21%2C5.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold513 SAMTools SNP 497552 497552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.46%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 497649 497649 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C40%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C126%2C0:99 scaffold513 SAMTools SNP 499373 499373 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C72%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C4.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C238:99 scaffold513 SAMTools SNP 499919 499919 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 499991 499991 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 500459 500459 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0052%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C20:23 scaffold513 SAMTools SNP 504327 504327 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 504397 504397 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold513 SAMTools SNP 504853 504853 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C244:99 scaffold513 SAMTools SNP 504872 504872 163 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold513 SAMTools SNP 508403 508403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0005%2C0.3%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 508424 508424 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1.3e-05%2C0.17%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C147:99 scaffold513 SAMTools SNP 508439 508439 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C0.0066%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C149:99 scaffold513 SAMTools SNP 508496 508496 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold513 SAMTools SNP 508550 508550 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold513 SAMTools SNP 509519 509519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold513 SAMTools SNP 509534 509534 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold513 SAMTools SNP 509588 509588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold513 SAMTools SNP 511155 511155 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C2.4e-08%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C173:69 scaffold513 SAMTools SNP 511411 511411 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold513 SAMTools SNP 511909 511909 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold513 SAMTools SNP 513017 513017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C11%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.67%2C0.28%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold513 SAMTools SNP 513080 513080 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.26%2C0.45%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold513 SAMTools SNP 513125 513125 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.32%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold513 SAMTools SNP 513436 513436 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.14%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold513 SAMTools SNP 516003 516003 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.25%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold513 SAMTools SNP 516014 516014 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold513 SAMTools SNP 518042 518042 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 518048 518048 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C0.41%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold513 SAMTools SNP 518221 518221 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 518344 518344 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold513 SAMTools SNP 518533 518533 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold513 SAMTools SNP 519266 519266 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 521832 521832 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D974%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D527%2C1%2C445%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 523610 523610 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold513 SAMTools SNP 523951 523951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C15%2C49%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 523981 523981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C15%2C33%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 524102 524102 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold513 SAMTools SNP 524721 524721 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C53%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold513 SAMTools SNP 525823 525823 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C35%2C84%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 525912 525912 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C126%2C65%2C82%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.27%2C1.3e-246%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold513 SAMTools SNP 525980 525980 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold513 SAMTools SNP 534760 534760 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D-4.62%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C25:29 scaffold513 SAMTools SNP 539441 539441 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 543314 543314 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C97:99 scaffold513 SAMTools SNP 543548 543548 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.081%2C1.9e-16%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold513 SAMTools SNP 543635 543635 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold513 SAMTools SNP 543644 543644 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold513 SAMTools SNP 544246 544246 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 545552 545552 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C2.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C197:99 scaffold513 SAMTools SNP 545906 545906 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C35%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold513 SAMTools SNP 554104 554104 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 554494 554494 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 555816 555816 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold513 SAMTools SNP 556210 556210 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold513 SAMTools SNP 556237 556237 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 564226 564226 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold513 SAMTools SNP 564232 564232 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold513 SAMTools SNP 564919 564919 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold513 SAMTools SNP 570231 570231 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C242:99 scaffold513 SAMTools SNP 570663 570663 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold513 SAMTools SNP 571217 571217 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold513 SAMTools SNP 571727 571727 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold513 SAMTools SNP 571757 571757 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.3%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C190:87 scaffold513 SAMTools SNP 572052 572052 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold513 SAMTools SNP 572071 572071 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.47%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold513 SAMTools SNP 572461 572461 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold513 SAMTools SNP 572482 572482 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 575683 575683 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 575692 575692 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold513 SAMTools SNP 580577 580577 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 580743 580743 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 587996 587996 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold513 SAMTools SNP 601049 601049 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C2e-16%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold513 SAMTools SNP 616584 616584 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold513 SAMTools SNP 616653 616653 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold513 SAMTools SNP 617063 617063 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.55%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold513 SAMTools SNP 617155 617155 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold513 SAMTools SNP 617198 617198 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 629143 629143 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C217:99 scaffold513 SAMTools SNP 629582 629582 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 629645 629645 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C7%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold513 SAMTools SNP 629669 629669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C12%2C8%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold513 SAMTools SNP 630091 630091 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.0015%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold513 SAMTools SNP 630172 630172 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold513 SAMTools SNP 630190 630190 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold513 SAMTools SNP 630201 630201 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C213:99 scaffold513 SAMTools SNP 630396 630396 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold513 SAMTools SNP 630420 630420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold513 SAMTools SNP 630797 630797 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold513 SAMTools SNP 630823 630823 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C63:43 scaffold513 SAMTools SNP 630835 630835 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold513 SAMTools SNP 630928 630928 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.001%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold513 SAMTools SNP 631278 631278 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.046%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold513 SAMTools SNP 631305 631305 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold513 SAMTools SNP 632724 632724 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C188:99 scaffold513 SAMTools SNP 632829 632829 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C225:99 scaffold513 SAMTools SNP 634091 634091 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold513 SAMTools SNP 634244 634244 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C28%2C6%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.77%2C1.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold513 SAMTools SNP 634274 634274 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.4%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold513 SAMTools SNP 634573 634573 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold513 SAMTools SNP 701230 701230 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.056%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold514 SAMTools SNP 11140 11140 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 11558 11558 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 11574 11574 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold514 SAMTools SNP 11657 11657 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold514 SAMTools SNP 11892 11892 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold514 SAMTools SNP 12155 12155 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C81%2C0:99 scaffold514 SAMTools SNP 12199 12199 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold514 SAMTools SNP 12275 12275 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 12702 12702 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 12737 12737 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 12792 12792 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 12814 12814 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 13321 13321 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 13328 13328 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 14060 14060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold514 SAMTools SNP 14065 14065 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 14074 14074 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold514 SAMTools SNP 14084 14084 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold514 SAMTools SNP 14381 14381 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 14631 14631 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold514 SAMTools SNP 14799 14799 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold514 SAMTools SNP 14811 14811 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold514 SAMTools SNP 14946 14946 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 15246 15246 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 15561 15561 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 15787 15787 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold514 SAMTools SNP 15920 15920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold514 SAMTools SNP 16719 16719 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold514 SAMTools SNP 16752 16752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold514 SAMTools SNP 16791 16791 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold514 SAMTools SNP 17530 17530 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold514 SAMTools SNP 19693 19693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold514 SAMTools SNP 19708 19708 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold514 SAMTools SNP 23710 23710 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold514 SAMTools SNP 35831 35831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 38553 38553 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 38614 38614 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 40222 40222 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 40274 40274 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 40566 40566 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 40599 40599 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold514 SAMTools SNP 40615 40615 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.25%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C211:99 scaffold514 SAMTools SNP 40638 40638 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold514 SAMTools SNP 41118 41118 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.39%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold514 SAMTools SNP 41142 41142 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold514 SAMTools SNP 41174 41174 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold514 SAMTools SNP 41933 41933 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold514 SAMTools SNP 42415 42415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold514 SAMTools SNP 42427 42427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold514 SAMTools SNP 43102 43102 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold514 SAMTools SNP 47443 47443 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 47456 47456 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 49892 49892 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold514 SAMTools SNP 51453 51453 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold514 SAMTools SNP 52207 52207 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 52534 52534 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C25%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 52726 52726 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C24%2C25%2C25%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.44%2C1.5e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold514 SAMTools SNP 52739 52739 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C44%2C19%2C25%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.15%2C8.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold514 SAMTools SNP 53029 53029 70.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold514 SAMTools SNP 53394 53394 70.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold514 SAMTools SNP 53401 53401 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold514 SAMTools SNP 53716 53716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 54277 54277 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C81%2C0:99 scaffold514 SAMTools SNP 54400 54400 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C87%2C0:99 scaffold514 SAMTools SNP 54553 54553 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C13%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C247:54 scaffold514 SAMTools SNP 54727 54727 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C25%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C182:99 scaffold514 SAMTools SNP 54772 54772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C6%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00095%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold514 SAMTools SNP 55396 55396 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 55424 55424 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold514 SAMTools SNP 56327 56327 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 57433 57433 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C27%2C0:51 scaffold514 SAMTools SNP 58098 58098 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold514 SAMTools SNP 62029 62029 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C22%2C12%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C6e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold514 SAMTools SNP 62056 62056 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C21%2C51%2C17%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C3.6e-111%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold514 SAMTools SNP 62882 62882 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold514 SAMTools SNP 63877 63877 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C14%2C47%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1.4e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 64345 64345 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C64%2C25%2C58%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.61%2C3.4e-103%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold514 SAMTools SNP 67095 67095 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C48%2C0:85 scaffold514 SAMTools SNP 67182 67182 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C25%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D4.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C59:62 scaffold514 SAMTools SNP 67199 67199 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C15%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C0.26%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold514 SAMTools SNP 68661 68661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold514 SAMTools SNP 68673 68673 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 68763 68763 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 68793 68793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C28%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold514 SAMTools SNP 69016 69016 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 69153 69153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold514 SAMTools SNP 69158 69158 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C11%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0053%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold514 SAMTools SNP 69430 69430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold514 SAMTools SNP 69433 69433 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold514 SAMTools SNP 70715 70715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold514 SAMTools SNP 70718 70718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold514 SAMTools SNP 71764 71764 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C22%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C253:99 scaffold514 SAMTools SNP 71793 71793 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold514 SAMTools SNP 72098 72098 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C0%2C43%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0041%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold514 SAMTools SNP 72148 72148 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.033%2C0.16%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold514 SAMTools SNP 72245 72245 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C11%2C63%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.003%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold514 SAMTools SNP 73358 73358 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.14%2C0.0028%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold514 SAMTools SNP 73370 73370 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.061%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold514 SAMTools SNP 73588 73588 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold514 SAMTools SNP 74445 74445 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.68%2C0.0052%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold514 SAMTools SNP 74547 74547 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold514 SAMTools SNP 75421 75421 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C217:99 scaffold514 SAMTools SNP 75493 75493 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C9.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold514 SAMTools SNP 76367 76367 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold514 SAMTools SNP 76406 76406 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold514 SAMTools SNP 76496 76496 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.53%2C0.34%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold514 SAMTools SNP 76529 76529 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold514 SAMTools SNP 76550 76550 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0284%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.55%2C6.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold514 SAMTools SNP 77724 77724 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold514 SAMTools SNP 77778 77778 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold514 SAMTools SNP 78090 78090 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C235:34 scaffold514 SAMTools SNP 78620 78620 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C36%2C0:69 scaffold514 SAMTools SNP 79212 79212 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold514 SAMTools SNP 79539 79539 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold514 SAMTools SNP 79554 79554 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.086%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold514 SAMTools SNP 79877 79877 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 79892 79892 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C4.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C240:88 scaffold514 SAMTools SNP 79997 79997 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C29%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C208:99 scaffold514 SAMTools SNP 80441 80441 165 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C22%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C249:99 scaffold514 SAMTools SNP 80480 80480 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C16%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C247:99 scaffold514 SAMTools SNP 80492 80492 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C18%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C142:99 scaffold514 SAMTools SNP 83692 83692 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold514 SAMTools SNP 83739 83739 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold514 SAMTools SNP 84706 84706 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.25%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C149:95 scaffold514 SAMTools SNP 84928 84928 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold514 SAMTools SNP 85132 85132 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold514 SAMTools SNP 86384 86384 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 86531 86531 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 86554 86554 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold514 SAMTools SNP 89811 89811 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold514 SAMTools SNP 91505 91505 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold514 SAMTools SNP 91538 91538 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold514 SAMTools SNP 93900 93900 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C12%2C0:21 scaffold514 SAMTools SNP 94599 94599 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 94632 94632 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold514 SAMTools SNP 95471 95471 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold514 SAMTools SNP 95507 95507 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold514 SAMTools SNP 99372 99372 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold514 SAMTools SNP 111187 111187 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold514 SAMTools SNP 111235 111235 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 111287 111287 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold514 SAMTools SNP 111315 111315 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold514 SAMTools SNP 111593 111593 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold514 SAMTools SNP 111646 111646 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold514 SAMTools SNP 112380 112380 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold514 SAMTools SNP 114195 114195 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold514 SAMTools SNP 114792 114792 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 115269 115269 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold514 SAMTools SNP 115290 115290 84.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold514 SAMTools SNP 116009 116009 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 116328 116328 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 116368 116368 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold514 SAMTools SNP 117382 117382 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 117460 117460 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold514 SAMTools SNP 117728 117728 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 117774 117774 63.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold514 SAMTools SNP 119212 119212 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 121578 121578 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold514 SAMTools SNP 121593 121593 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold514 SAMTools SNP 121941 121941 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 122138 122138 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 122266 122266 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 122630 122630 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold514 SAMTools SNP 122683 122683 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold514 SAMTools SNP 122689 122689 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold514 SAMTools SNP 130815 130815 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold514 SAMTools SNP 130883 130883 19.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold514 SAMTools SNP 130997 130997 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold514 SAMTools SNP 131285 131285 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 135736 135736 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold514 SAMTools SNP 137183 137183 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold514 SAMTools SNP 137203 137203 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold514 SAMTools SNP 141656 141656 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.26%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold514 SAMTools SNP 141729 141729 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold514 SAMTools SNP 141758 141758 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold514 SAMTools SNP 142298 142298 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 142381 142381 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C208:54 scaffold514 SAMTools SNP 143107 143107 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 143115 143115 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 145353 145353 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 147279 147279 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 147297 147297 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 147300 147300 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold514 SAMTools SNP 147309 147309 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold514 SAMTools SNP 147316 147316 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 147369 147369 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold514 SAMTools SNP 155440 155440 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C160:76 scaffold514 SAMTools SNP 170793 170793 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold514 SAMTools SNP 170802 170802 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 171563 171563 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.4%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 174736 174736 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 175438 175438 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 182882 182882 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold514 SAMTools SNP 182891 182891 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.45%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C242:99 scaffold514 SAMTools SNP 186209 186209 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold514 SAMTools SNP 186211 186211 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold514 SAMTools SNP 186295 186295 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold514 SAMTools SNP 190613 190613 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold514 SAMTools SNP 191125 191125 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.28%2C0.45%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold514 SAMTools SNP 191130 191130 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.16%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C209:99 scaffold514 SAMTools SNP 191136 191136 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.061%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C207:99 scaffold514 SAMTools SNP 191217 191217 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold514 SAMTools SNP 191848 191848 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 192254 192254 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold514 SAMTools SNP 192347 192347 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.37%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C155:34 scaffold514 SAMTools SNP 193082 193082 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold514 SAMTools SNP 193106 193106 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold514 SAMTools SNP 193226 193226 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 193856 193856 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold514 SAMTools SNP 201422 201422 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold514 SAMTools SNP 203051 203051 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.14%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold514 SAMTools SNP 203080 203080 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold514 SAMTools SNP 203623 203623 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C5.5e-17%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C239:99 scaffold514 SAMTools SNP 208965 208965 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold514 SAMTools SNP 209348 209348 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold514 SAMTools SNP 210333 210333 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C171:42 scaffold514 SAMTools SNP 210345 210345 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold514 SAMTools SNP 212205 212205 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold514 SAMTools SNP 212207 212207 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold514 SAMTools SNP 212240 212240 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.25%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold514 SAMTools SNP 212270 212270 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold514 SAMTools SNP 213135 213135 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold514 SAMTools SNP 214538 214538 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 214550 214550 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 215074 215074 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 219427 219427 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 219432 219432 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 219468 219468 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 219800 219800 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold514 SAMTools SNP 220699 220699 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C11%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1.3e-05%2C0.00065%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold514 SAMTools SNP 221065 221065 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold514 SAMTools SNP 221852 221852 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C18%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold514 SAMTools SNP 222344 222344 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C255%2C0:99 scaffold514 SAMTools SNP 222852 222852 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.47%2C5.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold514 SAMTools SNP 223227 223227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C18%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0056%2C2.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold514 SAMTools SNP 223263 223263 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C16%2C8%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.69%2C3.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C228:99 scaffold514 SAMTools SNP 223359 223359 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C34%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00031%2C2.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold514 SAMTools SNP 224259 224259 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C255%2C0:99 scaffold514 SAMTools SNP 224409 224409 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C48%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C169%2C0:99 scaffold514 SAMTools SNP 224733 224733 20.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold514 SAMTools SNP 224814 224814 59.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold514 SAMTools SNP 224960 224960 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold514 SAMTools SNP 225117 225117 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold514 SAMTools SNP 225537 225537 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C9.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C209:28 scaffold514 SAMTools SNP 231045 231045 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold514 SAMTools SNP 266908 266908 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold514 SAMTools SNP 299866 299866 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold514 SAMTools SNP 319460 319460 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold514 SAMTools SNP 320149 320149 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold514 SAMTools SNP 320175 320175 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold514 SAMTools SNP 320259 320259 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold514 SAMTools SNP 322490 322490 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 322491 322491 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 322553 322553 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold514 SAMTools SNP 322607 322607 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold514 SAMTools SNP 339500 339500 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C90%2C0:99 scaffold514 SAMTools SNP 339567 339567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C7%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold514 SAMTools SNP 339978 339978 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold514 SAMTools SNP 340067 340067 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C73%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold514 SAMTools SNP 340096 340096 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C51%2C12%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 341661 341661 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold514 SAMTools SNP 341671 341671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C40%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.038%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 341718 341718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold514 SAMTools SNP 342069 342069 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C39%2C21%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C4.1e-08%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 342075 342075 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C72%2C22%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 342132 342132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C55%2C9%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 342574 342574 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C30%2C9%2C6%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.38%2C9.9e-24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold514 SAMTools SNP 342652 342652 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C15%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold514 SAMTools SNP 342673 342673 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C32%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 343416 343416 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C0%2C11%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.56%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold514 SAMTools SNP 345443 345443 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold514 SAMTools SNP 345452 345452 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold514 SAMTools SNP 346869 346869 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 347290 347290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 348760 348760 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold514 SAMTools SNP 349035 349035 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold514 SAMTools SNP 349109 349109 33.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold514 SAMTools SNP 349547 349547 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold514 SAMTools SNP 350004 350004 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold514 SAMTools SNP 350060 350060 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C7%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold514 SAMTools SNP 351167 351167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold514 SAMTools SNP 351263 351263 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.15%2C0.49%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold514 SAMTools SNP 351287 351287 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C39%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 351751 351751 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C68%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold514 SAMTools SNP 352555 352555 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.41%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold514 SAMTools SNP 352871 352871 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold514 SAMTools SNP 352883 352883 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold514 SAMTools SNP 353033 353033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.35%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 353525 353525 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.54%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold514 SAMTools SNP 353927 353927 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.52%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold514 SAMTools SNP 353957 353957 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.07%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold514 SAMTools SNP 354770 354770 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold514 SAMTools SNP 355066 355066 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold514 SAMTools SNP 355141 355141 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 355688 355688 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 355754 355754 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C5%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C208%2C0:99 scaffold514 SAMTools SNP 355825 355825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 356197 356197 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C215:99 scaffold514 SAMTools SNP 356474 356474 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold514 SAMTools SNP 358654 358654 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 358687 358687 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold514 SAMTools SNP 358715 358715 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold514 SAMTools SNP 359556 359556 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.18%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold514 SAMTools SNP 360104 360104 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.35%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold514 SAMTools SNP 360113 360113 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold514 SAMTools SNP 360576 360576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 361602 361602 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold514 SAMTools SNP 361620 361620 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold514 SAMTools SNP 384980 384980 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 389413 389413 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C57:43 scaffold514 SAMTools SNP 389450 389450 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold514 SAMTools SNP 389453 389453 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold514 SAMTools SNP 391581 391581 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 392735 392735 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold514 SAMTools SNP 393010 393010 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold514 SAMTools SNP 393222 393222 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold514 SAMTools SNP 394638 394638 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold514 SAMTools SNP 395468 395468 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold514 SAMTools SNP 395532 395532 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold514 SAMTools SNP 397666 397666 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 397969 397969 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 397975 397975 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold514 SAMTools SNP 398295 398295 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold514 SAMTools SNP 404197 404197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold514 SAMTools SNP 405994 405994 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 406651 406651 29.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold514 SAMTools SNP 409216 409216 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 410503 410503 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 411133 411133 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold514 SAMTools SNP 411281 411281 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 411564 411564 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold514 SAMTools SNP 412420 412420 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold514 SAMTools SNP 418432 418432 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 418509 418509 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold514 SAMTools SNP 425391 425391 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 433738 433738 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C30%2C0:57 scaffold514 SAMTools SNP 451332 451332 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C193:30 scaffold514 SAMTools SNP 451349 451349 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C51:54 scaffold514 SAMTools SNP 454248 454248 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold514 SAMTools SNP 454340 454340 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold514 SAMTools SNP 461808 461808 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 461922 461922 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold514 SAMTools SNP 462459 462459 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold514 SAMTools SNP 462590 462590 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D62.9%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C107:93 scaffold514 SAMTools SNP 462600 462600 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C74:77 scaffold514 SAMTools SNP 464890 464890 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 468429 468429 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 468456 468456 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold514 SAMTools SNP 470394 470394 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 470415 470415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 479037 479037 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 479059 479059 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 491380 491380 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C7e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C37%2C0:59 scaffold514 SAMTools SNP 494916 494916 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 494957 494957 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.35%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold514 SAMTools SNP 497098 497098 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C1%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold514 SAMTools SNP 498378 498378 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 498582 498582 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 499230 499230 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 499254 499254 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 499597 499597 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold514 SAMTools SNP 500016 500016 116 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold514 SAMTools SNP 500028 500028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold514 SAMTools SNP 500046 500046 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold514 SAMTools SNP 500733 500733 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold514 SAMTools SNP 500791 500791 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold514 SAMTools SNP 502880 502880 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold514 SAMTools SNP 502884 502884 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold514 SAMTools SNP 502905 502905 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold514 SAMTools SNP 502923 502923 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C175:99 scaffold514 SAMTools SNP 503714 503714 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C201:72 scaffold514 SAMTools SNP 517498 517498 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C2%2C19%2C1%3BMQ%3D49%3BFQ%3D3.02%3BPV4%3D0.013%2C0.34%2C0.38%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C27:30 scaffold514 SAMTools SNP 517511 517511 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold514 SAMTools SNP 517530 517530 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold514 SAMTools SNP 517714 517714 26.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold514 SAMTools SNP 517930 517930 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold514 SAMTools SNP 518440 518440 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold514 SAMTools SNP 518648 518648 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold514 SAMTools SNP 518666 518666 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold517 SAMTools SNP 23112 23112 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 24045 24045 29.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold517 SAMTools SNP 31841 31841 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold517 SAMTools SNP 52537 52537 54.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C18%2C0:33 scaffold517 SAMTools SNP 63758 63758 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C10%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold517 SAMTools SNP 63817 63817 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C34%2C39%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold517 SAMTools SNP 88166 88166 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C13%2C23%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.66%2C2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold517 SAMTools SNP 88223 88223 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold517 SAMTools SNP 89506 89506 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C3%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold517 SAMTools SNP 90111 90111 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold517 SAMTools SNP 90363 90363 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold517 SAMTools SNP 91772 91772 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 92164 92164 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.58%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold517 SAMTools SNP 92719 92719 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold517 SAMTools SNP 93737 93737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C26%2C0:49 scaffold517 SAMTools SNP 94053 94053 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.00041%2C4e-05%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold517 SAMTools SNP 94058 94058 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D104%3BPV4%3D4.9e-08%2C1.1e-10%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold517 SAMTools SNP 95277 95277 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold517 SAMTools SNP 95578 95578 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold517 SAMTools SNP 95581 95581 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold517 SAMTools SNP 96754 96754 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 98193 98193 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold517 SAMTools SNP 99886 99886 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 99890 99890 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 101980 101980 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C0.091%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold517 SAMTools SNP 101989 101989 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C5%3BMQ%3D48%3BFQ%3D170%3BPV4%3D1%2C1%2C0.17%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C246:99 scaffold517 SAMTools SNP 165141 165141 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold517 SAMTools SNP 178195 178195 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C20%3BMQ%3D49%3BFQ%3D-77%3BPV4%3D1%2C6.2e-15%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C50%2C0:93 scaffold517 SAMTools SNP 180840 180840 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 181030 181030 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 190370 190370 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold517 SAMTools SNP 203753 203753 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold517 SAMTools SNP 210824 210824 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold517 SAMTools SNP 210845 210845 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold517 SAMTools SNP 210855 210855 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold517 SAMTools SNP 214621 214621 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold517 SAMTools SNP 214786 214786 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold517 SAMTools SNP 215226 215226 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold517 SAMTools SNP 215250 215250 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold520 SAMTools SNP 13288 13288 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold520 SAMTools SNP 13333 13333 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold520 SAMTools SNP 14827 14827 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold520 SAMTools SNP 15646 15646 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold520 SAMTools SNP 30069 30069 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold520 SAMTools SNP 53287 53287 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold520 SAMTools SNP 130224 130224 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold520 SAMTools SNP 130648 130648 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold520 SAMTools SNP 130837 130837 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold520 SAMTools SNP 144900 144900 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold520 SAMTools SNP 159658 159658 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold520 SAMTools SNP 223591 223591 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold520 SAMTools SNP 224131 224131 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold520 SAMTools SNP 224186 224186 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C108:40 scaffold520 SAMTools SNP 226426 226426 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold520 SAMTools SNP 271862 271862 60.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C6%2C0:10 scaffold521 SAMTools SNP 1920 1920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold521 SAMTools SNP 4888 4888 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold521 SAMTools SNP 6159 6159 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C7%2C19%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold521 SAMTools SNP 14350 14350 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold521 SAMTools SNP 14353 14353 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C4%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold521 SAMTools SNP 14361 14361 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C6%2C1%3BMQ%3D49%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold521 SAMTools SNP 28639 28639 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold521 SAMTools SNP 46141 46141 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.54%2C0.0049%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold521 SAMTools SNP 46630 46630 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold521 SAMTools SNP 46640 46640 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0093%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C234:43 scaffold521 SAMTools SNP 52287 52287 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold521 SAMTools SNP 52297 52297 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold521 SAMTools SNP 53657 53657 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0004%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C60:63 scaffold521 SAMTools SNP 53747 53747 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold521 SAMTools SNP 58348 58348 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold521 SAMTools SNP 58986 58986 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.16%2C0.45%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C249:99 scaffold521 SAMTools SNP 60139 60139 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.23%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold521 SAMTools SNP 61119 61119 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold521 SAMTools SNP 62243 62243 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold521 SAMTools SNP 62798 62798 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 66035 66035 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold521 SAMTools SNP 66056 66056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold521 SAMTools SNP 66228 66228 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C33%2C0:63 scaffold521 SAMTools SNP 66484 66484 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold521 SAMTools SNP 67683 67683 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold521 SAMTools SNP 67882 67882 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold521 SAMTools SNP 75177 75177 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold521 SAMTools SNP 75526 75526 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold521 SAMTools SNP 75674 75674 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C33%2C0:63 scaffold521 SAMTools SNP 76160 76160 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold521 SAMTools SNP 77260 77260 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold521 SAMTools SNP 142559 142559 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold521 SAMTools SNP 179143 179143 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D47%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold521 SAMTools SNP 179365 179365 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C237:99 scaffold521 SAMTools SNP 179404 179404 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.74%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 179637 179637 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold521 SAMTools SNP 179676 179676 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C0.00011%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C228:99 scaffold521 SAMTools SNP 179751 179751 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C15%2C0:27 scaffold521 SAMTools SNP 179763 179763 21.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold521 SAMTools SNP 201615 201615 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C40:43 scaffold521 SAMTools SNP 201622 201622 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.17%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C189:62 scaffold521 SAMTools SNP 202640 202640 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold521 SAMTools SNP 202646 202646 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold521 SAMTools SNP 202682 202682 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold521 SAMTools SNP 202687 202687 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold521 SAMTools SNP 210909 210909 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold521 SAMTools SNP 211719 211719 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold521 SAMTools SNP 211764 211764 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C27%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.00025%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C41:44 scaffold521 SAMTools SNP 211767 211767 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.00089%2C0.27%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold521 SAMTools SNP 212061 212061 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0088%2C0.002%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold521 SAMTools SNP 212385 212385 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C9%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold521 SAMTools SNP 212389 212389 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C12%2C9%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold521 SAMTools SNP 212401 212401 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.24%2C1%2C1.2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 212640 212640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C18%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 212700 212700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C35%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold521 SAMTools SNP 214893 214893 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 214896 214896 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 214899 214899 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 214920 214920 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold521 SAMTools SNP 214932 214932 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 214962 214962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C3%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold521 SAMTools SNP 216033 216033 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C1%2C3%3BMQ%3D49%3BFQ%3D76%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold521 SAMTools SNP 216081 216081 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C3%2C14%2C17%3BMQ%3D49%3BFQ%3D-13.2%3BPV4%3D0.62%2C1.3e-07%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C14:17 scaffold521 SAMTools SNP 216144 216144 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold521 SAMTools SNP 216604 216604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold521 SAMTools SNP 220862 220862 16.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold521 SAMTools SNP 223775 223775 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D762%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D74%2C269%2C205%2C214%3BMQ%3D7%3BFQ%3D-30%3BPV4%3D4e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C3%2C0:6 scaffold521 SAMTools SNP 229750 229750 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold522 SAMTools SNP 3891 3891 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C0%2C116%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C4.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 4943 4943 18.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold522 SAMTools SNP 5049 5049 16.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold522 SAMTools SNP 6932 6932 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C81%2C0:99 scaffold522 SAMTools SNP 6983 6983 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C6.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold522 SAMTools SNP 7170 7170 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold522 SAMTools SNP 7744 7744 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 17878 17878 92.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold522 SAMTools SNP 18117 18117 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C3%3BMQ%3D48%3BFQ%3D55%3BPV4%3D0.0071%2C0.029%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C230:85 scaffold522 SAMTools SNP 25582 25582 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold522 SAMTools SNP 27393 27393 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C60%2C0%2C34%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0086%2C2.9e-19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold522 SAMTools SNP 28333 28333 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 29171 29171 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C32%2C10%3BMQ%3D48%3BFQ%3D211%3BPV4%3D0.0038%2C1%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold522 SAMTools SNP 29210 29210 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D49%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold522 SAMTools SNP 29322 29322 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C77%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C229%2C0:99 scaffold522 SAMTools SNP 36069 36069 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 36721 36721 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold522 SAMTools SNP 36915 36915 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 39040 39040 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold522 SAMTools SNP 39378 39378 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold522 SAMTools SNP 52897 52897 20.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C15%2C0:26 scaffold522 SAMTools SNP 53125 53125 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold522 SAMTools SNP 53177 53177 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.32%2C1.8e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold522 SAMTools SNP 53886 53886 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C12%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold522 SAMTools SNP 55066 55066 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C36%2C0:69 scaffold522 SAMTools SNP 65714 65714 11.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold522 SAMTools SNP 65849 65849 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.36%2C2.3e-13%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C191:99 scaffold522 SAMTools SNP 66245 66245 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold522 SAMTools SNP 66431 66431 140 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C54%2C0%2C163%2C31%2C160:99 scaffold522 SAMTools SNP 66689 66689 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C3.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold522 SAMTools SNP 66980 66980 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.085%2C3.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold522 SAMTools SNP 67403 67403 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.48%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 68088 68088 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C20%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold522 SAMTools SNP 69733 69733 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.00033%2C0.00019%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold522 SAMTools SNP 72745 72745 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold522 SAMTools SNP 72962 72962 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold522 SAMTools SNP 74105 74105 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold522 SAMTools SNP 74404 74404 91.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D35%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C10%2C0:17 scaffold522 SAMTools SNP 74435 74435 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D38%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C34:37 scaffold522 SAMTools SNP 74809 74809 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C24%2C0:45 scaffold522 SAMTools SNP 76123 76123 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 78727 78727 83.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D33%3BFQ%3D-31%3BPV4%3D0.49%2C0.16%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C4%2C0:7 scaffold522 SAMTools SNP 79349 79349 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C5%2C0:8 scaffold522 SAMTools SNP 80399 80399 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C4%2C8%3BMQ%3D30%3BFQ%3D90%3BPV4%3D0.16%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C180:99 scaffold522 SAMTools SNP 80933 80933 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold522 SAMTools SNP 81371 81371 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.19%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold522 SAMTools SNP 81394 81394 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold522 SAMTools SNP 81560 81560 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold522 SAMTools SNP 81604 81604 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C129:99 scaffold522 SAMTools SNP 82233 82233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold522 SAMTools SNP 83392 83392 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold522 SAMTools SNP 83426 83426 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C34%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold522 SAMTools SNP 83808 83808 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D759%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D315%2C129%2C230%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 84231 84231 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C244%2C20%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.076%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 84265 84265 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D577%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C303%2C18%2C221%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.65%2C3.3e-261%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold522 SAMTools SNP 84662 84662 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C13%2C6%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0044%2C1%2C7.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold522 SAMTools SNP 85835 85835 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C104%2C51%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-29%2C1.4e-18%2C1%2C6.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 85859 85859 93.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold522 SAMTools SNP 85865 85865 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold522 SAMTools SNP 86087 86087 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C199:98 scaffold522 SAMTools SNP 86157 86157 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C0%2C58%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 86444 86444 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 86698 86698 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C39%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold522 SAMTools SNP 86733 86733 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold522 SAMTools SNP 86771 86771 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C63%2C0:99 scaffold522 SAMTools SNP 86815 86815 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C5%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C96%2C0:99 scaffold522 SAMTools SNP 86868 86868 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C45%2C0:87 scaffold522 SAMTools SNP 87389 87389 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold522 SAMTools SNP 87467 87467 81.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold522 SAMTools SNP 87862 87862 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 87866 87866 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C65%2C5%2C8%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.32%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold522 SAMTools SNP 88086 88086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold522 SAMTools SNP 88428 88428 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C16%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C0.44%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold522 SAMTools SNP 88490 88490 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C21%2C0:39 scaffold522 SAMTools SNP 89183 89183 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 89202 89202 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 89268 89268 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 89670 89670 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold522 SAMTools SNP 89740 89740 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold522 SAMTools SNP 89929 89929 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 92627 92627 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 92738 92738 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 93010 93010 110 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C86%2C74%2C141%2C0%2C135:21 scaffold522 SAMTools SNP 93115 93115 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 93118 93118 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 94633 94633 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 94690 94690 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold522 SAMTools SNP 96134 96134 24.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.0091%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C12:15 scaffold522 SAMTools SNP 96613 96613 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C12%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C8.4e-30%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C152:51 scaffold522 SAMTools SNP 102843 102843 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 102874 102874 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold522 SAMTools SNP 104253 104253 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.29%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold522 SAMTools SNP 104483 104483 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C30%2C0:57 scaffold522 SAMTools SNP 104654 104654 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold522 SAMTools SNP 111203 111203 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold522 SAMTools SNP 111204 111204 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D38%3BPV4%3D1%2C0.02%2C0.24%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C187:68 scaffold522 SAMTools SNP 111243 111243 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D49%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold522 SAMTools SNP 112292 112292 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold522 SAMTools SNP 112334 112334 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.11%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold522 SAMTools SNP 114214 114214 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C42%3BMQ%3D48%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold522 SAMTools SNP 115685 115685 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold522 SAMTools SNP 116418 116418 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C67:70 scaffold522 SAMTools SNP 116764 116764 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold522 SAMTools SNP 116875 116875 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 116877 116877 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 117418 117418 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold522 SAMTools SNP 117598 117598 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold522 SAMTools SNP 118892 118892 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 118899 118899 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 118974 118974 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold522 SAMTools SNP 118983 118983 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold522 SAMTools SNP 119753 119753 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold522 SAMTools SNP 122930 122930 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold522 SAMTools SNP 123139 123139 37.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold522 SAMTools SNP 124737 124737 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D734%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D543%2C0%2C191%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold522 SAMTools SNP 124758 124758 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D929%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D660%2C0%2C269%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.28%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold522 SAMTools SNP 127125 127125 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C0%2C50%3BMQ%3D50%3BFQ%3D165%3BPV4%3D7.5e-08%2C2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold522 SAMTools SNP 127167 127167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C32%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 128774 128774 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C14%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.049%2C1.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold522 SAMTools SNP 130943 130943 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold522 SAMTools SNP 130972 130972 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C230:99 scaffold522 SAMTools SNP 134712 134712 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold522 SAMTools SNP 153419 153419 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.15%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C158:99 scaffold522 SAMTools SNP 153428 153428 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold522 SAMTools SNP 153539 153539 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold522 SAMTools SNP 153924 153924 46.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold522 SAMTools SNP 153996 153996 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold522 SAMTools SNP 154462 154462 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold522 SAMTools SNP 154513 154513 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C82:85 scaffold522 SAMTools SNP 154576 154576 51.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold522 SAMTools SNP 154986 154986 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold522 SAMTools SNP 155025 155025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 155753 155753 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold522 SAMTools SNP 155764 155764 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold522 SAMTools SNP 155810 155810 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold522 SAMTools SNP 156276 156276 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 156288 156288 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 156332 156332 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold522 SAMTools SNP 156697 156697 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 156977 156977 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 157000 157000 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 158674 158674 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold522 SAMTools SNP 159249 159249 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.46%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold522 SAMTools SNP 159546 159546 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold522 SAMTools SNP 159606 159606 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 159618 159618 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold522 SAMTools SNP 160501 160501 29.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold522 SAMTools SNP 160766 160766 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold522 SAMTools SNP 163695 163695 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 163725 163725 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 163767 163767 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold522 SAMTools SNP 172561 172561 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold522 SAMTools SNP 175394 175394 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold522 SAMTools SNP 175754 175754 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C57%2C0:99 scaffold522 SAMTools SNP 176264 176264 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold522 SAMTools SNP 176716 176716 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold522 SAMTools SNP 176899 176899 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C255%2C0:99 scaffold522 SAMTools SNP 177124 177124 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C255%2C0:99 scaffold522 SAMTools SNP 177398 177398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold522 SAMTools SNP 177516 177516 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 177522 177522 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C1%2C11%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold522 SAMTools SNP 177569 177569 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C24%2C72%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 177823 177823 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C13%2C116%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C9.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 177901 177901 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C74%2C1%2C87%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1.9e-32%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold522 SAMTools SNP 178196 178196 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C111%2C5%2C63%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1.8e-10%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold522 SAMTools SNP 178334 178334 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 178576 178576 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C28%2C28%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 179167 179167 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C140%2C3%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 179380 179380 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C3%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.13%2C0.12%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold522 SAMTools SNP 179564 179564 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C43%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold522 SAMTools SNP 179591 179591 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold522 SAMTools SNP 179660 179660 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C18%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.042%2C3.7e-54%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold522 SAMTools SNP 179684 179684 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold522 SAMTools SNP 179705 179705 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.033%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold522 SAMTools SNP 179711 179711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold522 SAMTools SNP 182602 182602 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 182770 182770 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D202%2C49%2C139%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 182854 182854 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C93%2C100%2C116%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C3.7e-38%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 182866 182866 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C341%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 182872 182872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D579%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C225%2C9%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-06%2C0.053%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 183101 183101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1452%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D656%2C116%2C609%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 183235 183235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1567%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D596%2C55%2C888%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 183277 183277 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1660%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C372%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 183397 183397 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C489%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 183683 183683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold522 SAMTools SNP 183686 183686 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 183719 183719 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.48%2C0.091%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold522 SAMTools SNP 183759 183759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 184110 184110 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C18%2C11%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold522 SAMTools SNP 184188 184188 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C151%2C31%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-19%2C0.054%2C1%2C4.3e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 184215 184215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C96%2C36%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 184221 184221 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C25%2C1%2C22%3BMQ%3D50%3BFQ%3D204%3BPV4%3D3.3e-06%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold522 SAMTools SNP 184420 184420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold522 SAMTools SNP 184425 184425 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold522 SAMTools SNP 184932 184932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C236%2C33%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 185079 185079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C238%2C76%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-08%2C1%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 185125 185125 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C44%2C46%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-14%2C0.38%2C1%2C4.8e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 185130 185130 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C54%2C47%2C6%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0015%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold522 SAMTools SNP 185139 185139 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C15%2C57%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 185167 185167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C288%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 185461 185461 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D522%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold522 SAMTools SNP 187093 187093 11.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1.7e-13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C17:21 scaffold522 SAMTools SNP 187213 187213 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0146%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold522 SAMTools SNP 187222 187222 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold522 SAMTools SNP 188194 188194 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold522 SAMTools SNP 188215 188215 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold522 SAMTools SNP 188233 188233 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold522 SAMTools SNP 188272 188272 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold522 SAMTools SNP 189666 189666 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold522 SAMTools SNP 195300 195300 4.78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5011%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C23:28 scaffold522 SAMTools SNP 195342 195342 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold522 SAMTools SNP 195593 195593 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold522 SAMTools SNP 208066 208066 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C57%2C0:99 scaffold522 SAMTools SNP 208310 208310 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold522 SAMTools SNP 208350 208350 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold522 SAMTools SNP 220370 220370 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold522 SAMTools SNP 220382 220382 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C14%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.0068%2C0.081%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold522 SAMTools SNP 223878 223878 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold522 SAMTools SNP 224022 224022 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold522 SAMTools SNP 224134 224134 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold522 SAMTools SNP 227743 227743 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.26%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold522 SAMTools SNP 231337 231337 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.36%2C1.6e-13%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C145:99 scaffold522 SAMTools SNP 231364 231364 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.44%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C193:99 scaffold522 SAMTools SNP 231388 231388 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.24%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold522 SAMTools SNP 232116 232116 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold522 SAMTools SNP 243650 243650 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold522 SAMTools SNP 247098 247098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 247729 247729 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C26%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.48%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold522 SAMTools SNP 248293 248293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C45%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold522 SAMTools SNP 248766 248766 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 249139 249139 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 249198 249198 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C20%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold522 SAMTools SNP 249870 249870 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold522 SAMTools SNP 250080 250080 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 251010 251010 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold522 SAMTools SNP 251017 251017 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 254220 254220 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 254707 254707 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 255060 255060 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 256031 256031 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 256064 256064 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold522 SAMTools SNP 256780 256780 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold522 SAMTools SNP 258140 258140 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold522 SAMTools SNP 258154 258154 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold522 SAMTools SNP 263866 263866 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C1%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C135%2C0:99 scaffold522 SAMTools SNP 265101 265101 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C39%2C0:75 scaffold522 SAMTools SNP 265472 265472 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C75%2C0:99 scaffold522 SAMTools SNP 265763 265763 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C49%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C1%2C6.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 265778 265778 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C47%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 265868 265868 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C9%2C15%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-15%2C0.018%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 265883 265883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 265889 265889 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C87%2C37%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 266205 266205 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C91%2C0%2C30%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.00068%2C2.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold522 SAMTools SNP 266292 266292 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C26%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold522 SAMTools SNP 266501 266501 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C12%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 267282 267282 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C28%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C6.5e-27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold522 SAMTools SNP 267285 267285 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold522 SAMTools SNP 267287 267287 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold522 SAMTools SNP 267288 267288 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C186:99 scaffold522 SAMTools SNP 267489 267489 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C30%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 267800 267800 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 267845 267845 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C66%2C0:99 scaffold522 SAMTools SNP 267920 267920 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1.2e-127%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold522 SAMTools SNP 267971 267971 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 267974 267974 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 268347 268347 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold522 SAMTools SNP 268702 268702 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 268708 268708 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C0%2C9%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.18%2C1%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold522 SAMTools SNP 268738 268738 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C38%3BMQ%3D50%3BFQ%3D-130%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C103%2C0:99 scaffold522 SAMTools SNP 268774 268774 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C19%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 269046 269046 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C33%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 269067 269067 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C13%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold522 SAMTools SNP 269100 269100 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C27%2C12%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.18%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold522 SAMTools SNP 269572 269572 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C74%2C36%2C64%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.49%2C8.9e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold522 SAMTools SNP 271124 271124 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C211:99 scaffold522 SAMTools SNP 271492 271492 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C47%2C74%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D3.2e-07%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold522 SAMTools SNP 271571 271571 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold522 SAMTools SNP 271597 271597 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C6.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C74:47 scaffold522 SAMTools SNP 272247 272247 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C110%2C17%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.8e-51%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 272295 272295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D527%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C91%2C432%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0086%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 273721 273721 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold522 SAMTools SNP 274006 274006 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 274033 274033 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold522 SAMTools SNP 274048 274048 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C7%2C4%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold522 SAMTools SNP 274078 274078 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C8%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold522 SAMTools SNP 274218 274218 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold522 SAMTools SNP 274339 274339 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C15%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold522 SAMTools SNP 274804 274804 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C55%2C24%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D4.8e-08%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold522 SAMTools SNP 274993 274993 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C60%2C66%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1.2e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold522 SAMTools SNP 275023 275023 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C57%2C39%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D2e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold522 SAMTools SNP 275074 275074 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C50%2C17%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C5.4e-22%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 275119 275119 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C10%2C49%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.59%2C4.9e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold522 SAMTools SNP 275221 275221 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold522 SAMTools SNP 275260 275260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 275750 275750 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C9%2C14%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.039%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold522 SAMTools SNP 275822 275822 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C2%2C65%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.28%2C1.9e-63%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold522 SAMTools SNP 275906 275906 23.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold522 SAMTools SNP 275912 275912 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold522 SAMTools SNP 275939 275939 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold522 SAMTools SNP 276357 276357 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C10%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.00022%2C0.4%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold522 SAMTools SNP 282499 282499 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D47%2C17%2C16%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C3.7e-05%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold522 SAMTools SNP 283746 283746 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold522 SAMTools SNP 286886 286886 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C62%2C72%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C0.11%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 286898 286898 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C56%2C83%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C0.49%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 287267 287267 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C94%2C31%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 291007 291007 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 291058 291058 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 291130 291130 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C101:73 scaffold522 SAMTools SNP 294058 294058 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C255%2C0:99 scaffold522 SAMTools SNP 294100 294100 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold522 SAMTools SNP 295933 295933 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.02%2C6.7e-05%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold522 SAMTools SNP 295966 295966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold522 SAMTools SNP 296743 296743 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C7%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.00069%2C0.062%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold522 SAMTools SNP 296770 296770 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C7%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0022%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold522 SAMTools SNP 296839 296839 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold522 SAMTools SNP 301935 301935 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C38%2C9%2C7%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.012%2C7.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold522 SAMTools SNP 303395 303395 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold522 SAMTools SNP 308493 308493 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0073%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold522 SAMTools SNP 309643 309643 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold522 SAMTools SNP 309860 309860 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold522 SAMTools SNP 312987 312987 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold522 SAMTools SNP 313781 313781 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 325186 325186 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 333052 333052 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold522 SAMTools SNP 344412 344412 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold522 SAMTools SNP 344427 344427 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 353432 353432 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 353440 353440 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 354028 354028 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 354062 354062 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 355975 355975 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold522 SAMTools SNP 356913 356913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold522 SAMTools SNP 357589 357589 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 357595 357595 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 368234 368234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 372825 372825 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 373649 373649 22.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C24%2C0:41 scaffold522 SAMTools SNP 375220 375220 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold522 SAMTools SNP 376068 376068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C16%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.011%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold522 SAMTools SNP 376098 376098 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold522 SAMTools SNP 377383 377383 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold522 SAMTools SNP 377435 377435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold522 SAMTools SNP 377447 377447 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold522 SAMTools SNP 379360 379360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.17%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold522 SAMTools SNP 379405 379405 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D67.9%3BPV4%3D0.033%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C99:98 scaffold522 SAMTools SNP 380672 380672 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold522 SAMTools SNP 380810 380810 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1e-52%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold522 SAMTools SNP 381128 381128 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.54%2C4.6e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold522 SAMTools SNP 381314 381314 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C24%2C0:45 scaffold522 SAMTools SNP 381620 381620 11.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold522 SAMTools SNP 396068 396068 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 396081 396081 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D22.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C52:53 scaffold522 SAMTools SNP 396084 396084 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C32:35 scaffold522 SAMTools SNP 396135 396135 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.014%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold522 SAMTools SNP 400722 400722 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold522 SAMTools SNP 404464 404464 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C15%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.22%2C1.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C243:99 scaffold522 SAMTools SNP 405285 405285 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold522 SAMTools SNP 405376 405376 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C255%2C0:99 scaffold522 SAMTools SNP 406722 406722 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C5.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C132:76 scaffold522 SAMTools SNP 406960 406960 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold522 SAMTools SNP 407029 407029 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold522 SAMTools SNP 407086 407086 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C21%2C0:39 scaffold522 SAMTools SNP 407283 407283 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C255%2C0:99 scaffold522 SAMTools SNP 407509 407509 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.3e-20%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C192:39 scaffold522 SAMTools SNP 407627 407627 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C192:48 scaffold522 SAMTools SNP 410992 410992 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 412053 412053 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C1%2C13%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.31%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold522 SAMTools SNP 412080 412080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold522 SAMTools SNP 413442 413442 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 413933 413933 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.016%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 413960 413960 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold522 SAMTools SNP 414013 414013 70 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C65%2C32%2C89%2C0%2C82:63 scaffold522 SAMTools SNP 414095 414095 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 414771 414771 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold522 SAMTools SNP 417952 417952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold522 SAMTools SNP 418364 418364 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold522 SAMTools SNP 418368 418368 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.25%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold522 SAMTools SNP 419328 419328 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold522 SAMTools SNP 419373 419373 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 422970 422970 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 424120 424120 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 424525 424525 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 424976 424976 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold522 SAMTools SNP 425228 425228 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold522 SAMTools SNP 425302 425302 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold522 SAMTools SNP 425466 425466 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 426956 426956 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C43:46 scaffold522 SAMTools SNP 427162 427162 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold522 SAMTools SNP 427206 427206 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold522 SAMTools SNP 427529 427529 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C0.23%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold522 SAMTools SNP 427628 427628 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 427640 427640 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold522 SAMTools SNP 427903 427903 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold522 SAMTools SNP 428397 428397 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold522 SAMTools SNP 428907 428907 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold522 SAMTools SNP 428913 428913 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 428940 428940 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold522 SAMTools SNP 429263 429263 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold522 SAMTools SNP 429277 429277 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold522 SAMTools SNP 429315 429315 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold522 SAMTools SNP 429750 429750 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C243:99 scaffold522 SAMTools SNP 429774 429774 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C244:99 scaffold522 SAMTools SNP 429780 429780 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C24%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold522 SAMTools SNP 431215 431215 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 431713 431713 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold522 SAMTools SNP 431860 431860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C14%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.1%2C0.00056%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold522 SAMTools SNP 431875 431875 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C0.043%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C150:99 scaffold522 SAMTools SNP 432757 432757 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 433231 433231 169 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold522 SAMTools SNP 433757 433757 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.28%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C211:99 scaffold522 SAMTools SNP 434194 434194 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold522 SAMTools SNP 434371 434371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold522 SAMTools SNP 474148 474148 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold522 SAMTools SNP 488699 488699 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold522 SAMTools SNP 488783 488783 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold522 SAMTools SNP 491102 491102 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.15%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold522 SAMTools SNP 493215 493215 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold522 SAMTools SNP 493239 493239 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold522 SAMTools SNP 498288 498288 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold522 SAMTools SNP 500219 500219 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 500287 500287 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold522 SAMTools SNP 503334 503334 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold522 SAMTools SNP 503337 503337 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.37%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold522 SAMTools SNP 503352 503352 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C7%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold522 SAMTools SNP 503478 503478 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C51%2C0:99 scaffold522 SAMTools SNP 503505 503505 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.00014%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 503957 503957 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.3%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold522 SAMTools SNP 503988 503988 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.6%2C0.37%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold522 SAMTools SNP 504506 504506 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold522 SAMTools SNP 504539 504539 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold522 SAMTools SNP 504807 504807 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.085%2C0.049%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold522 SAMTools SNP 504882 504882 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.28%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C209:99 scaffold522 SAMTools SNP 505100 505100 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold522 SAMTools SNP 505281 505281 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold522 SAMTools SNP 505573 505573 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold522 SAMTools SNP 506109 506109 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 506585 506585 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.46%2C0.043%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C182:74 scaffold522 SAMTools SNP 506669 506669 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.25%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold522 SAMTools SNP 507033 507033 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold522 SAMTools SNP 507054 507054 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold522 SAMTools SNP 507381 507381 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold522 SAMTools SNP 507395 507395 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold522 SAMTools SNP 507398 507398 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.017%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C197:69 scaffold522 SAMTools SNP 507410 507410 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold522 SAMTools SNP 507425 507425 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold522 SAMTools SNP 507476 507476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold522 SAMTools SNP 507901 507901 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold522 SAMTools SNP 507913 507913 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold522 SAMTools SNP 508000 508000 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold522 SAMTools SNP 510073 510073 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C0%2C16%3BMQ%3D50%3BFQ%3D205%3BPV4%3D7.1e-07%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold522 SAMTools SNP 510091 510091 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.001%2C0.063%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold522 SAMTools SNP 510094 510094 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0015%2C0.043%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold522 SAMTools SNP 510115 510115 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C30%2C0:57 scaffold522 SAMTools SNP 510202 510202 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold522 SAMTools SNP 510561 510561 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold522 SAMTools SNP 510585 510585 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 510651 510651 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold522 SAMTools SNP 511043 511043 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 511052 511052 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 511420 511420 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold522 SAMTools SNP 511928 511928 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0081%2C0.26%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C218:99 scaffold522 SAMTools SNP 511961 511961 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold522 SAMTools SNP 512103 512103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold522 SAMTools SNP 512152 512152 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold522 SAMTools SNP 513314 513314 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold522 SAMTools SNP 513329 513329 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold522 SAMTools SNP 513347 513347 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold522 SAMTools SNP 513356 513356 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold522 SAMTools SNP 513796 513796 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C42%2C0:81 scaffold522 SAMTools SNP 513847 513847 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 513853 513853 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold522 SAMTools SNP 514285 514285 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 514411 514411 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold522 SAMTools SNP 514450 514450 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C0.23%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold522 SAMTools SNP 514938 514938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C25%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold522 SAMTools SNP 515166 515166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 515220 515220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C51%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold522 SAMTools SNP 515241 515241 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C3%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold522 SAMTools SNP 515492 515492 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold522 SAMTools SNP 515504 515504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold522 SAMTools SNP 517011 517011 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold522 SAMTools SNP 524392 524392 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold522 SAMTools SNP 527687 527687 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C60%2C0:99 scaffold522 SAMTools SNP 527698 527698 83.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold522 SAMTools SNP 528511 528511 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C0%2C15%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.0058%2C6.3e-06%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold522 SAMTools SNP 529401 529401 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C10%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C234:99 scaffold522 SAMTools SNP 529410 529410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 529431 529431 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 529473 529473 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C183%2C0%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 530811 530811 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C0.12%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold522 SAMTools SNP 531264 531264 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C96%2C139%2C122%3BMQ%3D39%3BFQ%3D105%3BPV4%3D4.6e-23%2C1%2C2.3e-20%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C132:99 scaffold522 SAMTools SNP 531764 531764 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 532928 532928 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D29%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C123%2C0:99 scaffold522 SAMTools SNP 532952 532952 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D40%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C66%2C0:99 scaffold522 SAMTools SNP 558469 558469 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold522 SAMTools SNP 563640 563640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C70%2C105%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 564425 564425 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C30%2C0:57 scaffold522 SAMTools SNP 564627 564627 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 566888 566888 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold522 SAMTools SNP 577265 577265 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold522 SAMTools SNP 577389 577389 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 578488 578488 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 582884 582884 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold522 SAMTools SNP 583197 583197 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 584772 584772 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C6.4e-05%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C225:49 scaffold522 SAMTools SNP 591390 591390 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold522 SAMTools SNP 594841 594841 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C31%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold522 SAMTools SNP 594872 594872 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 596080 596080 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold522 SAMTools SNP 596509 596509 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C6%2C11%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.17%2C4.8e-06%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold522 SAMTools SNP 596524 596524 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold522 SAMTools SNP 596608 596608 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-05%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 597160 597160 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.027%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold522 SAMTools SNP 597202 597202 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold522 SAMTools SNP 597566 597566 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold522 SAMTools SNP 597582 597582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.021%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 597952 597952 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 598296 598296 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 598351 598351 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold522 SAMTools SNP 598696 598696 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C23%2C75%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C3.8e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 598781 598781 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C80%2C4%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 599719 599719 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold522 SAMTools SNP 602149 602149 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold522 SAMTools SNP 602198 602198 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold522 SAMTools SNP 602578 602578 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.5e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C251:70 scaffold522 SAMTools SNP 602806 602806 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold522 SAMTools SNP 602925 602925 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C48%2C0:73 scaffold522 SAMTools SNP 605433 605433 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold522 SAMTools SNP 605468 605468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold522 SAMTools SNP 609544 609544 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold522 SAMTools SNP 611408 611408 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold522 SAMTools SNP 612239 612239 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold522 SAMTools SNP 612267 612267 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C0.47%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold522 SAMTools SNP 613137 613137 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold522 SAMTools SNP 613166 613166 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold522 SAMTools SNP 615427 615427 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold522 SAMTools SNP 619913 619913 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold522 SAMTools SNP 621838 621838 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C51%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold522 SAMTools SNP 624236 624236 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 624549 624549 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C40%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold522 SAMTools SNP 624684 624684 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 624738 624738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold522 SAMTools SNP 624801 624801 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold522 SAMTools SNP 625270 625270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 625566 625566 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold522 SAMTools SNP 626188 626188 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold522 SAMTools SNP 626196 626196 222 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0%2C233%2C4%2C230:99 scaffold522 SAMTools SNP 626998 626998 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C23%2C65%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 627771 627771 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C129%2C16%2C30%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.73%2C1%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold522 SAMTools SNP 628699 628699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C30%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold522 SAMTools SNP 628729 628729 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold522 SAMTools SNP 628738 628738 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C102%2C0:99 scaffold522 SAMTools SNP 628972 628972 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C10%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.027%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold522 SAMTools SNP 629425 629425 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C27%2C4%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold522 SAMTools SNP 629485 629485 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 629730 629730 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 630283 630283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 630285 630285 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 631359 631359 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C9%2C59%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C2.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold522 SAMTools SNP 631383 631383 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C54%2C13%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold522 SAMTools SNP 631389 631389 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold522 SAMTools SNP 634350 634350 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C81%2C0%2C29%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0038%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold522 SAMTools SNP 634385 634385 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C82%2C1%2C22%3BMQ%3D49%3BFQ%3D80%3BPV4%3D0.015%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold522 SAMTools SNP 634405 634405 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold522 SAMTools SNP 635630 635630 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold522 SAMTools SNP 647386 647386 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C104:49 scaffold522 SAMTools SNP 647503 647503 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold524 SAMTools SNP 29310 29310 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold524 SAMTools SNP 32242 32242 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 32244 32244 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 38007 38007 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold524 SAMTools SNP 38023 38023 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold524 SAMTools SNP 38034 38034 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold524 SAMTools SNP 38071 38071 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C12%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold524 SAMTools SNP 38101 38101 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold524 SAMTools SNP 38486 38486 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.57%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold524 SAMTools SNP 38489 38489 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.58%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold524 SAMTools SNP 38498 38498 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold524 SAMTools SNP 38558 38558 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold524 SAMTools SNP 38684 38684 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 38691 38691 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0041%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold524 SAMTools SNP 38704 38704 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold524 SAMTools SNP 41251 41251 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold524 SAMTools SNP 41268 41268 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C150:99 scaffold524 SAMTools SNP 41283 41283 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 41359 41359 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold524 SAMTools SNP 76041 76041 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold524 SAMTools SNP 76044 76044 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold524 SAMTools SNP 76091 76091 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold524 SAMTools SNP 76132 76132 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0015%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C32:35 scaffold524 SAMTools SNP 81021 81021 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C7.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C88:91 scaffold524 SAMTools SNP 81190 81190 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold524 SAMTools SNP 81485 81485 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C103:99 scaffold524 SAMTools SNP 81516 81516 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold524 SAMTools SNP 81529 81529 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 81963 81963 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.44%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold524 SAMTools SNP 82025 82025 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C8%2C0%3BMQ%3D43%3BFQ%3D145%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C214:99 scaffold524 SAMTools SNP 83002 83002 134 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C4%3BMQ%3D43%3BFQ%3D137%3BPV4%3D1%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold524 SAMTools SNP 83019 83019 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C221:44 scaffold524 SAMTools SNP 84088 84088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 84478 84478 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C0%3BMQ%3D48%3BFQ%3D53%3BPV4%3D1%2C0.31%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C228:83 scaffold524 SAMTools SNP 84498 84498 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C201:83 scaffold524 SAMTools SNP 84943 84943 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C2%2C7%2C1%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.29%2C1%2C0.23%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold524 SAMTools SNP 84955 84955 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C51%2C3%3BMQ%3D48%3BFQ%3D151%3BPV4%3D0.57%2C0.18%2C0.093%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold524 SAMTools SNP 84958 84958 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C16%2C8%2C5%3BMQ%3D48%3BFQ%3D134%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold524 SAMTools SNP 84976 84976 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C25%2C17%2C0%3BMQ%3D48%3BFQ%3D94%3BPV4%3D0.0048%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold524 SAMTools SNP 85008 85008 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C38%2C0%2C4%3BMQ%3D48%3BFQ%3D6.99%3BPV4%3D1%2C0.19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C219:33 scaffold524 SAMTools SNP 85238 85238 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C0%2C7%3BMQ%3D46%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold524 SAMTools SNP 85250 85250 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C10%3BMQ%3D43%3BFQ%3D80%3BPV4%3D0.095%2C1%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C107:99 scaffold524 SAMTools SNP 85785 85785 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D38%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C115:99 scaffold524 SAMTools SNP 86362 86362 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 86472 86472 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 86614 86614 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C48%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.25%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C169:99 scaffold524 SAMTools SNP 86699 86699 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.067%2C0.00023%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold524 SAMTools SNP 87649 87649 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C17%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.00012%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold524 SAMTools SNP 87657 87657 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold524 SAMTools SNP 87677 87677 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C234:99 scaffold524 SAMTools SNP 88453 88453 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C79:40 scaffold524 SAMTools SNP 88488 88488 71.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D2%2C1%2C51%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C154%2C168%2C155%2C0%2C236:17 scaffold524 SAMTools SNP 90322 90322 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold524 SAMTools SNP 90384 90384 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.17%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C10%2C0:17 scaffold524 SAMTools SNP 90897 90897 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 90924 90924 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 90972 90972 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold524 SAMTools SNP 92435 92435 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold524 SAMTools SNP 93424 93424 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold524 SAMTools SNP 93435 93435 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold524 SAMTools SNP 96167 96167 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 97627 97627 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold524 SAMTools SNP 100108 100108 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold524 SAMTools SNP 100152 100152 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold524 SAMTools SNP 100173 100173 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold524 SAMTools SNP 139985 139985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C37%2C14%3BMQ%3D50%3BFQ%3D131%3BPV4%3D6.6e-07%2C1%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold524 SAMTools SNP 141024 141024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold524 SAMTools SNP 141154 141154 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold524 SAMTools SNP 141656 141656 195 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C18:21 scaffold524 SAMTools SNP 141667 141667 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold524 SAMTools SNP 153686 153686 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C25%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold524 SAMTools SNP 153733 153733 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C25%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0084%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold524 SAMTools SNP 153869 153869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C0.28%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold524 SAMTools SNP 154099 154099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold524 SAMTools SNP 154318 154318 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 192085 192085 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold524 SAMTools SNP 192523 192523 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold524 SAMTools SNP 192759 192759 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold524 SAMTools SNP 192849 192849 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold524 SAMTools SNP 194886 194886 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold524 SAMTools SNP 247592 247592 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold524 SAMTools SNP 249176 249176 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 250851 250851 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold524 SAMTools SNP 276196 276196 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold524 SAMTools SNP 286333 286333 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold524 SAMTools SNP 409658 409658 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 410178 410178 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 410199 410199 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold524 SAMTools SNP 410335 410335 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold524 SAMTools SNP 410388 410388 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold524 SAMTools SNP 410410 410410 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold524 SAMTools SNP 410686 410686 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold524 SAMTools SNP 411198 411198 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C250:99 scaffold524 SAMTools SNP 411288 411288 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.68%2C1.5e-19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold524 SAMTools SNP 411311 411311 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.34%2C2.5e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold524 SAMTools SNP 413859 413859 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C112:57 scaffold524 SAMTools SNP 413920 413920 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 417010 417010 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C17%2C14%2C9%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0055%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold524 SAMTools SNP 417052 417052 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C52%2C209%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.0074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold524 SAMTools SNP 418766 418766 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C315%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold524 SAMTools SNP 418770 418770 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C314%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold524 SAMTools SNP 418941 418941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C27%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C7.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold524 SAMTools SNP 418959 418959 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.084%2C1%2C1%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold524 SAMTools SNP 418960 418960 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.084%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold524 SAMTools SNP 419529 419529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold524 SAMTools SNP 420684 420684 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold524 SAMTools SNP 420693 420693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold524 SAMTools SNP 421501 421501 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold524 SAMTools SNP 422147 422147 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C265%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold524 SAMTools SNP 422173 422173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C196%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold524 SAMTools SNP 431630 431630 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 439497 439497 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C7%3BMQ%3D45%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C217:78 scaffold524 SAMTools SNP 439498 439498 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold524 SAMTools SNP 455569 455569 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 455584 455584 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold524 SAMTools SNP 457455 457455 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold524 SAMTools SNP 457456 457456 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold524 SAMTools SNP 457886 457886 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 459897 459897 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold524 SAMTools SNP 460265 460265 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.4%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C174:99 scaffold524 SAMTools SNP 460568 460568 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C149:99 scaffold524 SAMTools SNP 462436 462436 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold524 SAMTools SNP 462446 462446 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold524 SAMTools SNP 465112 465112 79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.055%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C201:99 scaffold524 SAMTools SNP 466083 466083 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold524 SAMTools SNP 466101 466101 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold524 SAMTools SNP 466409 466409 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold524 SAMTools SNP 467604 467604 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold525 SAMTools SNP 3030 3030 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold525 SAMTools SNP 3192 3192 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold525 SAMTools SNP 28406 28406 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold525 SAMTools SNP 31208 31208 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold525 SAMTools SNP 32610 32610 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold525 SAMTools SNP 32754 32754 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold525 SAMTools SNP 56746 56746 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold525 SAMTools SNP 58102 58102 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold525 SAMTools SNP 58138 58138 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold525 SAMTools SNP 58390 58390 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold525 SAMTools SNP 62317 62317 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold525 SAMTools SNP 62737 62737 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold525 SAMTools SNP 62936 62936 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold525 SAMTools SNP 69605 69605 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D48%3BFQ%3D-50%3BPV4%3D1%2C3.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C23%2C0:37 scaffold525 SAMTools SNP 108357 108357 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1390%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D529%2C282%2C1%2C578%3BMQ%3D50%3BFQ%3D214%3BPV4%3D2.4e-171%2C6.3e-146%2C1%2C3.2e-98;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold525 SAMTools SNP 110111 110111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3379%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D397%2C943%2C129%2C1482%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold525 SAMTools SNP 110128 110128 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3300%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D399%2C1634%2C78%2C724%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-11%2C0.025%2C1%2C1.9e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold525 SAMTools SNP 112152 112152 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C131%2C0%2C116%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C188:99 scaffold525 SAMTools SNP 160523 160523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 53192 53192 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold527 SAMTools SNP 53986 53986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C25%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold527 SAMTools SNP 54232 54232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C17%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold527 SAMTools SNP 54244 54244 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1.6e-08%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 54259 54259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 54544 54544 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C39%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold527 SAMTools SNP 54547 54547 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.067%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 54839 54839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 54944 54944 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C41%2C61%2C5%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1.6e-05%2C1%2C0.074%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 54980 54980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C8%2C78%2C5%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 57210 57210 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C100%2C3%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 57257 57257 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C203:99 scaffold527 SAMTools SNP 57269 57269 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold527 SAMTools SNP 57376 57376 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C69%2C0:99 scaffold527 SAMTools SNP 57532 57532 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold527 SAMTools SNP 114001 114001 21.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold527 SAMTools SNP 117619 117619 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C54%2C0:99 scaffold527 SAMTools SNP 117875 117875 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C21%2C0:39 scaffold527 SAMTools SNP 121249 121249 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C4%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0047%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold527 SAMTools SNP 127991 127991 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold527 SAMTools SNP 128159 128159 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold527 SAMTools SNP 128192 128192 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.02%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold527 SAMTools SNP 128237 128237 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C26%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.37%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C165:99 scaffold527 SAMTools SNP 130918 130918 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold527 SAMTools SNP 135100 135100 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold527 SAMTools SNP 135673 135673 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C156:31 scaffold527 SAMTools SNP 135968 135968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold527 SAMTools SNP 136016 136016 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold527 SAMTools SNP 136127 136127 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold527 SAMTools SNP 136447 136447 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold527 SAMTools SNP 136504 136504 137 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C47%2C35%2C164%2C0%2C161:21 scaffold527 SAMTools SNP 136525 136525 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.19%2C0.058%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold527 SAMTools SNP 137241 137241 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.081%2C1.5e-10%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold527 SAMTools SNP 137269 137269 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold527 SAMTools SNP 137308 137308 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold527 SAMTools SNP 138134 138134 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold527 SAMTools SNP 138574 138574 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 139154 139154 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.49%2C4.3e-08%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C199:99 scaffold527 SAMTools SNP 140059 140059 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold527 SAMTools SNP 144958 144958 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold527 SAMTools SNP 145717 145717 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 148712 148712 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 149230 149230 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 149248 149248 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 150436 150436 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 150451 150451 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 150556 150556 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold527 SAMTools SNP 151070 151070 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold527 SAMTools SNP 151133 151133 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold527 SAMTools SNP 151511 151511 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.6%2C0.14%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold527 SAMTools SNP 151882 151882 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold527 SAMTools SNP 151928 151928 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C27%2C0:51 scaffold527 SAMTools SNP 151934 151934 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C4.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C241:85 scaffold527 SAMTools SNP 152081 152081 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C154:99 scaffold527 SAMTools SNP 152087 152087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold527 SAMTools SNP 152627 152627 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold527 SAMTools SNP 152628 152628 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold527 SAMTools SNP 155755 155755 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold527 SAMTools SNP 160846 160846 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold527 SAMTools SNP 164133 164133 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold527 SAMTools SNP 164845 164845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold527 SAMTools SNP 164896 164896 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold527 SAMTools SNP 173450 173450 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 174445 174445 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold527 SAMTools SNP 174619 174619 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C253:99 scaffold527 SAMTools SNP 175964 175964 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold527 SAMTools SNP 188406 188406 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold527 SAMTools SNP 194008 194008 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C42:45 scaffold527 SAMTools SNP 194507 194507 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C215:99 scaffold527 SAMTools SNP 194517 194517 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold527 SAMTools SNP 277420 277420 29.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C0.0053%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C5%2C0:9 scaffold527 SAMTools SNP 292822 292822 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold527 SAMTools SNP 294822 294822 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C151%2C0:99 scaffold527 SAMTools SNP 296455 296455 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 334436 334436 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1e-43%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C251:69 scaffold527 SAMTools SNP 334565 334565 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C69%2C0:99 scaffold527 SAMTools SNP 336139 336139 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold527 SAMTools SNP 336184 336184 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold527 SAMTools SNP 337312 337312 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 337483 337483 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C47%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.49%2C1.3e-35%2C1%2C2.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C231:99 scaffold527 SAMTools SNP 337561 337561 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C21%2C0%2C18%3BMQ%3D50%3BFQ%3D144%3BPV4%3D7.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold527 SAMTools SNP 342722 342722 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C247:99 scaffold527 SAMTools SNP 342773 342773 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold527 SAMTools SNP 343279 343279 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C289%2C75%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold527 SAMTools SNP 344151 344151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold527 SAMTools SNP 344157 344157 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold527 SAMTools SNP 344615 344615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold527 SAMTools SNP 347802 347802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold527 SAMTools SNP 347826 347826 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold527 SAMTools SNP 348102 348102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold527 SAMTools SNP 348111 348111 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C93%2C0:99 scaffold527 SAMTools SNP 348239 348239 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.54%2C3.3e-09%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold527 SAMTools SNP 348252 348252 15.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold527 SAMTools SNP 348507 348507 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold527 SAMTools SNP 348564 348564 61.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold527 SAMTools SNP 348735 348735 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C2%2C18%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold527 SAMTools SNP 352527 352527 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold527 SAMTools SNP 352722 352722 44.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold527 SAMTools SNP 354643 354643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 365978 365978 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C13%2C27%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.63%2C0.015%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 366097 366097 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 384208 384208 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.41%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold527 SAMTools SNP 384223 384223 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.66%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold527 SAMTools SNP 384629 384629 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold527 SAMTools SNP 385726 385726 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold527 SAMTools SNP 385747 385747 139 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold527 SAMTools SNP 385804 385804 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.18%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold527 SAMTools SNP 385861 385861 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold527 SAMTools SNP 386391 386391 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold527 SAMTools SNP 386873 386873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold527 SAMTools SNP 390638 390638 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold527 SAMTools SNP 399912 399912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold527 SAMTools SNP 403335 403335 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C48%2C4%2C32%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.4%2C2.8e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold527 SAMTools SNP 403350 403350 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C11%2C11%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.017%2C4.7e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold527 SAMTools SNP 403376 403376 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C4.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold527 SAMTools SNP 409948 409948 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D0.33%2C0.11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C41:43 scaffold527 SAMTools SNP 411716 411716 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold527 SAMTools SNP 412258 412258 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C11%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.00035%2C0.00097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold527 SAMTools SNP 413182 413182 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D34%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C51%2C0:99 scaffold527 SAMTools SNP 413220 413220 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold527 SAMTools SNP 413248 413248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C39%2C56%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00015%2C3.2e-11%2C7.4e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 413330 413330 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C406%2C100%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold527 SAMTools SNP 415915 415915 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold527 SAMTools SNP 426465 426465 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 426758 426758 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold527 SAMTools SNP 432170 432170 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C9%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.48%2C0.19%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold527 SAMTools SNP 436706 436706 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold527 SAMTools SNP 436728 436728 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold527 SAMTools SNP 443797 443797 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold527 SAMTools SNP 444361 444361 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold527 SAMTools SNP 445039 445039 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.04%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold527 SAMTools SNP 445130 445130 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold527 SAMTools SNP 449046 449046 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold527 SAMTools SNP 449304 449304 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold53 SAMTools SNP 9270 9270 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 9276 9276 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold53 SAMTools SNP 9768 9768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 10782 10782 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 12808 12808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold53 SAMTools SNP 12837 12837 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold53 SAMTools SNP 13573 13573 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C42%2C0:81 scaffold53 SAMTools SNP 16855 16855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold53 SAMTools SNP 17106 17106 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.59%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold53 SAMTools SNP 17572 17572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C1%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 17626 17626 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C29%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold53 SAMTools SNP 18295 18295 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C93%2C6%2C6%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold53 SAMTools SNP 18885 18885 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C48%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold53 SAMTools SNP 18912 18912 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C8%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.37%2C5.1e-20%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold53 SAMTools SNP 19243 19243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 19724 19724 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold53 SAMTools SNP 19733 19733 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 19751 19751 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C5.3e-08%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold53 SAMTools SNP 20243 20243 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 20860 20860 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C44%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold53 SAMTools SNP 21379 21379 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold53 SAMTools SNP 21381 21381 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.22%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold53 SAMTools SNP 21382 21382 221 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold53 SAMTools SNP 21460 21460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold53 SAMTools SNP 21503 21503 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.48%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold53 SAMTools SNP 21906 21906 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold53 SAMTools SNP 22094 22094 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 22545 22545 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold53 SAMTools SNP 23537 23537 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C22%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold53 SAMTools SNP 23933 23933 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold53 SAMTools SNP 23966 23966 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.45%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 24242 24242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 24821 24821 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold53 SAMTools SNP 24830 24830 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 24874 24874 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold53 SAMTools SNP 24875 24875 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold53 SAMTools SNP 25158 25158 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.043%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 25167 25167 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 25431 25431 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C69%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold53 SAMTools SNP 25487 25487 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold53 SAMTools SNP 29116 29116 20.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold53 SAMTools SNP 29137 29137 189 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold53 SAMTools SNP 50306 50306 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold53 SAMTools SNP 74587 74587 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold53 SAMTools SNP 74611 74611 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold53 SAMTools SNP 76915 76915 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold53 SAMTools SNP 76957 76957 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 77678 77678 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 78646 78646 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold53 SAMTools SNP 78698 78698 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold53 SAMTools SNP 78718 78718 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold53 SAMTools SNP 78721 78721 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D91.9%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C119:99 scaffold53 SAMTools SNP 80135 80135 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold53 SAMTools SNP 80194 80194 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 81321 81321 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C33%2C0:63 scaffold53 SAMTools SNP 85820 85820 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 93871 93871 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold53 SAMTools SNP 94039 94039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold53 SAMTools SNP 95851 95851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.64%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold53 SAMTools SNP 95971 95971 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold53 SAMTools SNP 98830 98830 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold53 SAMTools SNP 98833 98833 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.21%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C242:99 scaffold53 SAMTools SNP 98905 98905 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold53 SAMTools SNP 99204 99204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.17%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold53 SAMTools SNP 99243 99243 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold53 SAMTools SNP 99643 99643 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold53 SAMTools SNP 100402 100402 181 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold53 SAMTools SNP 100699 100699 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold53 SAMTools SNP 100882 100882 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold53 SAMTools SNP 101477 101477 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold53 SAMTools SNP 101480 101480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 101576 101576 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold53 SAMTools SNP 101642 101642 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold53 SAMTools SNP 101669 101669 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.0047%2C0.12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold53 SAMTools SNP 102330 102330 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold53 SAMTools SNP 104330 104330 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C139:74 scaffold53 SAMTools SNP 104360 104360 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 105442 105442 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold53 SAMTools SNP 108057 108057 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold53 SAMTools SNP 108107 108107 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold53 SAMTools SNP 108342 108342 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold53 SAMTools SNP 108573 108573 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold53 SAMTools SNP 109417 109417 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold53 SAMTools SNP 110087 110087 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold53 SAMTools SNP 111507 111507 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-4.15%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C25:28 scaffold53 SAMTools SNP 115410 115410 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold53 SAMTools SNP 115458 115458 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold53 SAMTools SNP 116938 116938 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold53 SAMTools SNP 116976 116976 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold53 SAMTools SNP 117663 117663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold53 SAMTools SNP 117699 117699 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00018%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold53 SAMTools SNP 122302 122302 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 122323 122323 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 122347 122347 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.59%3BPV4%3D1%2C0.00086%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C35:38 scaffold53 SAMTools SNP 122575 122575 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold53 SAMTools SNP 122626 122626 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold53 SAMTools SNP 123779 123779 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 123834 123834 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold53 SAMTools SNP 123857 123857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold53 SAMTools SNP 128954 128954 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C21%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.14%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold53 SAMTools SNP 128975 128975 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 129395 129395 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C23%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold53 SAMTools SNP 129456 129456 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold53 SAMTools SNP 129489 129489 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 129495 129495 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 130931 130931 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 130946 130946 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold53 SAMTools SNP 130984 130984 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 131002 131002 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold53 SAMTools SNP 131005 131005 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold53 SAMTools SNP 131548 131548 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C154:99 scaffold53 SAMTools SNP 131626 131626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 131633 131633 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold53 SAMTools SNP 132151 132151 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 132154 132154 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold53 SAMTools SNP 132157 132157 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.024%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C127:74 scaffold53 SAMTools SNP 132695 132695 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold53 SAMTools SNP 133339 133339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold53 SAMTools SNP 133807 133807 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.2e-06%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 134423 134423 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.21%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold53 SAMTools SNP 137610 137610 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold53 SAMTools SNP 137639 137639 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.075%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold53 SAMTools SNP 138078 138078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold53 SAMTools SNP 138141 138141 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold53 SAMTools SNP 138150 138150 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.2%2C3.5e-07%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold53 SAMTools SNP 138207 138207 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold53 SAMTools SNP 139116 139116 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C4%3BMQ%3D49%3BFQ%3D209%3BPV4%3D0.11%2C1%2C0.13%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C254:99 scaffold53 SAMTools SNP 139185 139185 67.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold53 SAMTools SNP 139227 139227 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold53 SAMTools SNP 140726 140726 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 140798 140798 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold53 SAMTools SNP 140834 140834 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold53 SAMTools SNP 148927 148927 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold53 SAMTools SNP 157266 157266 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 157269 157269 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 157332 157332 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold53 SAMTools SNP 160884 160884 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold53 SAMTools SNP 160926 160926 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C215:67 scaffold53 SAMTools SNP 160932 160932 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.42%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C173:99 scaffold53 SAMTools SNP 160971 160971 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.57%2C0.021%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C136:99 scaffold53 SAMTools SNP 161001 161001 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C126:99 scaffold53 SAMTools SNP 161271 161271 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold53 SAMTools SNP 161304 161304 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold53 SAMTools SNP 162452 162452 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C224:65 scaffold53 SAMTools SNP 162467 162467 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C235:99 scaffold53 SAMTools SNP 162971 162971 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 162989 162989 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 163037 163037 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold53 SAMTools SNP 163271 163271 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold53 SAMTools SNP 166350 166350 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C19%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.02%2C0.16%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold53 SAMTools SNP 167278 167278 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C25%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold53 SAMTools SNP 167547 167547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C21%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold53 SAMTools SNP 167726 167726 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 167736 167736 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold53 SAMTools SNP 167843 167843 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.54%2C0.081%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold53 SAMTools SNP 167861 167861 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.011%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C218:99 scaffold53 SAMTools SNP 168086 168086 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C9%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.096%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold53 SAMTools SNP 168432 168432 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold53 SAMTools SNP 168435 168435 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold53 SAMTools SNP 169014 169014 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold53 SAMTools SNP 169686 169686 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.01%2C0.048%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold53 SAMTools SNP 170109 170109 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold53 SAMTools SNP 170218 170218 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.45%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C223:99 scaffold53 SAMTools SNP 172612 172612 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold53 SAMTools SNP 174912 174912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold53 SAMTools SNP 176051 176051 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D9.3e-05%2C7.8e-08%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold53 SAMTools SNP 177533 177533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C100%2C0%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 178565 178565 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00039%2C0.16%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold53 SAMTools SNP 178580 178580 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.024%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold53 SAMTools SNP 178637 178637 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C114%2C0:99 scaffold53 SAMTools SNP 202274 202274 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold53 SAMTools SNP 202934 202934 9.53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold53 SAMTools SNP 203510 203510 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold53 SAMTools SNP 206856 206856 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C20%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 207068 207068 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C50%2C10%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 207835 207835 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold53 SAMTools SNP 211926 211926 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D81.7%3BPV4%3D0.49%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C121:99 scaffold53 SAMTools SNP 212055 212055 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C2.1e-12%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C207:49 scaffold53 SAMTools SNP 212253 212253 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C9%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C6.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C195:98 scaffold53 SAMTools SNP 212481 212481 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C17%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C5.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C156:99 scaffold53 SAMTools SNP 213866 213866 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 213888 213888 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 214053 214053 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 214068 214068 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 214284 214284 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C15%2C0:27 scaffold53 SAMTools SNP 222470 222470 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C0.19%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold53 SAMTools SNP 223113 223113 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.11%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C174:99 scaffold53 SAMTools SNP 223167 223167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold53 SAMTools SNP 223552 223552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C10%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 234563 234563 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold53 SAMTools SNP 234575 234575 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C21%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold53 SAMTools SNP 287201 287201 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold53 SAMTools SNP 357879 357879 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold53 SAMTools SNP 357998 357998 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 358553 358553 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold53 SAMTools SNP 358780 358780 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold53 SAMTools SNP 359435 359435 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold53 SAMTools SNP 407845 407845 37.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold53 SAMTools SNP 416266 416266 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D32%3BFQ%3D7.98%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C42:36 scaffold53 SAMTools SNP 416921 416921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold53 SAMTools SNP 417561 417561 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C15%3BMQ%3D48%3BFQ%3D198%3BPV4%3D0.38%2C0.092%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C229:99 scaffold53 SAMTools SNP 417600 417600 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold53 SAMTools SNP 418432 418432 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 418447 418447 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 418475 418475 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold53 SAMTools SNP 418485 418485 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold53 SAMTools SNP 429511 429511 15.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C18%2C0:28 scaffold53 SAMTools SNP 431259 431259 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold53 SAMTools SNP 432048 432048 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold53 SAMTools SNP 432060 432060 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold53 SAMTools SNP 432096 432096 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold53 SAMTools SNP 432114 432114 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold53 SAMTools SNP 432143 432143 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold53 SAMTools SNP 439793 439793 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold53 SAMTools SNP 441583 441583 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold53 SAMTools SNP 442328 442328 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C21%2C0:39 scaffold53 SAMTools SNP 443580 443580 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold53 SAMTools SNP 443622 443622 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 443637 443637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 443781 443781 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 445423 445423 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C0%3BMQ%3D48%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold53 SAMTools SNP 445474 445474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold53 SAMTools SNP 445504 445504 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold53 SAMTools SNP 446289 446289 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 447757 447757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 447826 447826 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.49%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold53 SAMTools SNP 448235 448235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold53 SAMTools SNP 448238 448238 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold53 SAMTools SNP 448256 448256 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold53 SAMTools SNP 448668 448668 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 449784 449784 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold53 SAMTools SNP 463601 463601 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C23%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold53 SAMTools SNP 463719 463719 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C12%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C3.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C186:99 scaffold53 SAMTools SNP 463804 463804 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.13%2C1.6e-30%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold53 SAMTools SNP 464918 464918 144 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C51%2C0%2C166%2C28%2C163:99 scaffold53 SAMTools SNP 464939 464939 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.3e-09%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C227:31 scaffold53 SAMTools SNP 465020 465020 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.054%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold53 SAMTools SNP 465035 465035 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold53 SAMTools SNP 465041 465041 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 465642 465642 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C143%2C8%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 466457 466457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold53 SAMTools SNP 467173 467173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C17%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D5.8e-06%2C0.39%2C1%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold53 SAMTools SNP 472690 472690 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 484524 484524 150 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.18%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold53 SAMTools SNP 484526 484526 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C6%2C16%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.66%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold53 SAMTools SNP 484632 484632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 485997 485997 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold53 SAMTools SNP 486053 486053 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C174:99 scaffold53 SAMTools SNP 491887 491887 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold53 SAMTools SNP 496009 496009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.036%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold53 SAMTools SNP 496018 496018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold53 SAMTools SNP 496054 496054 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.26%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold53 SAMTools SNP 496760 496760 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C223:99 scaffold53 SAMTools SNP 496897 496897 45.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold53 SAMTools SNP 496962 496962 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C28%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.2e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold53 SAMTools SNP 497175 497175 74.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C5:8 scaffold53 SAMTools SNP 497855 497855 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold53 SAMTools SNP 498544 498544 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold53 SAMTools SNP 498649 498649 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold53 SAMTools SNP 499129 499129 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold53 SAMTools SNP 500432 500432 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C30%2C0:53 scaffold53 SAMTools SNP 522484 522484 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C81%2C0:99 scaffold53 SAMTools SNP 522969 522969 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C6%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C105%2C0:99 scaffold53 SAMTools SNP 523133 523133 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 536180 536180 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.47%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C208:99 scaffold53 SAMTools SNP 536195 536195 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1e-06%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C229:28 scaffold53 SAMTools SNP 536324 536324 92.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C6:9 scaffold53 SAMTools SNP 536363 536363 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold53 SAMTools SNP 537574 537574 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.0005%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 550303 550303 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 550315 550315 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.0031%2C0.0035%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold53 SAMTools SNP 550422 550422 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold53 SAMTools SNP 550603 550603 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.00073%2C0.00067%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C221:83 scaffold53 SAMTools SNP 550607 550607 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0035%2C8.3e-10%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C218:41 scaffold53 SAMTools SNP 550715 550715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold53 SAMTools SNP 551130 551130 19.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold53 SAMTools SNP 551282 551282 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C0.063%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold53 SAMTools SNP 551348 551348 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold53 SAMTools SNP 551532 551532 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C32:35 scaffold53 SAMTools SNP 551551 551551 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold53 SAMTools SNP 551592 551592 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 551754 551754 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 569267 569267 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C191:65 scaffold53 SAMTools SNP 570365 570365 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold53 SAMTools SNP 570385 570385 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold53 SAMTools SNP 571132 571132 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold53 SAMTools SNP 572138 572138 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold53 SAMTools SNP 572396 572396 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C66:69 scaffold53 SAMTools SNP 573026 573026 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold53 SAMTools SNP 573050 573050 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold53 SAMTools SNP 585578 585578 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold53 SAMTools SNP 610454 610454 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C9.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold53 SAMTools SNP 610565 610565 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C75%2C0:99 scaffold53 SAMTools SNP 610783 610783 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.43%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C222:99 scaffold53 SAMTools SNP 610815 610815 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C16%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.16%2C3.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold53 SAMTools SNP 611168 611168 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold53 SAMTools SNP 617748 617748 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C219:99 scaffold53 SAMTools SNP 617756 617756 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C219:99 scaffold53 SAMTools SNP 618081 618081 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.11%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold53 SAMTools SNP 618083 618083 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold53 SAMTools SNP 618858 618858 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 618873 618873 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 619135 619135 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 619186 619186 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C22%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 619508 619508 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 619519 619519 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C1%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold53 SAMTools SNP 619777 619777 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 621696 621696 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 621750 621750 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 631188 631188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 631873 631873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold53 SAMTools SNP 632630 632630 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold53 SAMTools SNP 635573 635573 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 637096 637096 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold53 SAMTools SNP 637522 637522 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C129:87 scaffold53 SAMTools SNP 637641 637641 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold53 SAMTools SNP 637656 637656 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold53 SAMTools SNP 638280 638280 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold53 SAMTools SNP 638307 638307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold53 SAMTools SNP 638340 638340 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold53 SAMTools SNP 638394 638394 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold53 SAMTools SNP 640705 640705 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.065%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold53 SAMTools SNP 640732 640732 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold53 SAMTools SNP 640771 640771 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C24%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold53 SAMTools SNP 641558 641558 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.54%2C0.031%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold53 SAMTools SNP 642018 642018 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C35%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.00018%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 642866 642866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 642892 642892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C14%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.0033%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold53 SAMTools SNP 644168 644168 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold53 SAMTools SNP 644192 644192 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold53 SAMTools SNP 649556 649556 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C4%3BMQ%3D46%3BFQ%3D169%3BPV4%3D0.27%2C1%2C0.063%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C196:99 scaffold53 SAMTools SNP 654370 654370 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold53 SAMTools SNP 654883 654883 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold53 SAMTools SNP 654918 654918 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold53 SAMTools SNP 658379 658379 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C72%2C0:99 scaffold53 SAMTools SNP 660574 660574 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C188:99 scaffold53 SAMTools SNP 661950 661950 54.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold53 SAMTools SNP 663394 663394 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold53 SAMTools SNP 698588 698588 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.32%2C0.49%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold53 SAMTools SNP 698886 698886 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold53 SAMTools SNP 700267 700267 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold53 SAMTools SNP 700279 700279 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold53 SAMTools SNP 700280 700280 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0244%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold53 SAMTools SNP 700306 700306 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold53 SAMTools SNP 701253 701253 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold53 SAMTools SNP 701893 701893 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold53 SAMTools SNP 702944 702944 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold53 SAMTools SNP 702988 702988 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00032%2C0.0072%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold53 SAMTools SNP 703039 703039 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C48%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 705263 705263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C5%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 705616 705616 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold53 SAMTools SNP 711510 711510 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3041%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C12%3BMQ%3D48%3BFQ%3D-46%3BPV4%3D0.48%2C4.2e-12%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C19%2C0:35 scaffold53 SAMTools SNP 711546 711546 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4519%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C2147%2C63%2C848%3BMQ%3D38%3BFQ%3D200%3BPV4%3D0.0029%2C2.1e-27%2C1%2C2.5e-102;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold53 SAMTools SNP 711743 711743 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold53 SAMTools SNP 711767 711767 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C6%2C44%2C65%3BMQ%3D33%3BFQ%3D-99%3BPV4%3D0.48%2C1%2C0.035%2C6.8e-21;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C72%2C0:99 scaffold53 SAMTools SNP 711782 711782 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C30:33 scaffold53 SAMTools SNP 711857 711857 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2888%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D925%2C139%2C1792%2C9%3BMQ%3D47%3BFQ%3D94%3BPV4%3D7e-51%2C0%2C1%2C2.7e-88;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold53 SAMTools SNP 712019 712019 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7951%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C8%2C15%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0011%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C212:99 scaffold53 SAMTools SNP 714162 714162 52.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold53 SAMTools SNP 716740 716740 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold53 SAMTools SNP 716832 716832 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C255%2C0:99 scaffold53 SAMTools SNP 716864 716864 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C255%2C0:99 scaffold53 SAMTools SNP 718100 718100 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C23%2C0%2C12%3BMQ%3D50%3BFQ%3D57%3BPV4%3D6.3e-06%2C0.073%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold53 SAMTools SNP 718125 718125 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 742681 742681 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold53 SAMTools SNP 742689 742689 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C193:99 scaffold53 SAMTools SNP 745748 745748 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold53 SAMTools SNP 746551 746551 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.006%2C8e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold53 SAMTools SNP 748386 748386 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 748577 748577 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 748658 748658 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 749420 749420 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold53 SAMTools SNP 749422 749422 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 749448 749448 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 749693 749693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold53 SAMTools SNP 749717 749717 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold53 SAMTools SNP 749948 749948 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0088%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold53 SAMTools SNP 750029 750029 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold53 SAMTools SNP 750044 750044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold53 SAMTools SNP 750695 750695 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C171:99 scaffold53 SAMTools SNP 750704 750704 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold53 SAMTools SNP 750706 750706 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold53 SAMTools SNP 750838 750838 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold53 SAMTools SNP 751813 751813 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 752694 752694 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 752731 752731 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C111:80 scaffold53 SAMTools SNP 752755 752755 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C240:99 scaffold53 SAMTools SNP 752955 752955 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C1%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold53 SAMTools SNP 752968 752968 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold53 SAMTools SNP 753004 753004 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C59%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C190%2C0:99 scaffold53 SAMTools SNP 753089 753089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold53 SAMTools SNP 753119 753119 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.28%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C154:99 scaffold53 SAMTools SNP 753465 753465 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C146:99 scaffold53 SAMTools SNP 753524 753524 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold53 SAMTools SNP 756670 756670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold53 SAMTools SNP 757039 757039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold53 SAMTools SNP 757054 757054 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C19%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 758812 758812 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C108%2C2%2C25%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold53 SAMTools SNP 758857 758857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C0%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-06%2C1%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 758929 758929 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold53 SAMTools SNP 758965 758965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold53 SAMTools SNP 759453 759453 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C18%2C0:33 scaffold53 SAMTools SNP 759610 759610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold53 SAMTools SNP 759623 759623 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold53 SAMTools SNP 759938 759938 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.42%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C99:99 scaffold53 SAMTools SNP 760636 760636 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.019%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 760651 760651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold53 SAMTools SNP 760666 760666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold53 SAMTools SNP 760848 760848 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold53 SAMTools SNP 761400 761400 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold53 SAMTools SNP 761427 761427 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 761448 761448 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C13%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.35%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold53 SAMTools SNP 761508 761508 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold53 SAMTools SNP 761532 761532 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.11%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold53 SAMTools SNP 761712 761712 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold53 SAMTools SNP 761823 761823 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C18%2C33%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold53 SAMTools SNP 762068 762068 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C46%2C3%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.083%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold53 SAMTools SNP 762081 762081 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold53 SAMTools SNP 762088 762088 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold53 SAMTools SNP 763331 763331 51.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold53 SAMTools SNP 777091 777091 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold53 SAMTools SNP 777689 777689 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold53 SAMTools SNP 781675 781675 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 832249 832249 37.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold53 SAMTools SNP 902600 902600 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 915707 915707 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold53 SAMTools SNP 917191 917191 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold53 SAMTools SNP 954804 954804 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C203:60 scaffold53 SAMTools SNP 955578 955578 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold53 SAMTools SNP 955759 955759 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C33%2C38%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D9.9e-08%2C3.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold53 SAMTools SNP 955830 955830 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C7%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 955844 955844 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 967991 967991 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D48%3BFQ%3D27%3BPV4%3D1%2C1.6e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold53 SAMTools SNP 968015 968015 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.51%2C0.37%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold53 SAMTools SNP 968286 968286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C67%2C48%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 975970 975970 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C34%2C39%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 976394 976394 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C18%2C3%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.67%2C0.18%2C1%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold53 SAMTools SNP 977278 977278 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C22%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.15%2C1.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold53 SAMTools SNP 978325 978325 46.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold53 SAMTools SNP 978491 978491 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C7%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C99%2C0:99 scaffold53 SAMTools SNP 979253 979253 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.6%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold53 SAMTools SNP 979984 979984 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C39%2C0:75 scaffold53 SAMTools SNP 980008 980008 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C14%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.54%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold53 SAMTools SNP 980041 980041 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.56%2C0.2%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold53 SAMTools SNP 980366 980366 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold53 SAMTools SNP 980423 980423 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold53 SAMTools SNP 980468 980468 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C130:99 scaffold53 SAMTools SNP 980661 980661 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 983574 983574 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.038%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C182:33 scaffold53 SAMTools SNP 984272 984272 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C207:39 scaffold53 SAMTools SNP 984423 984423 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C7%2C19%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.73%2C8.6e-47%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold53 SAMTools SNP 984543 984543 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C9%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.11%2C0.014%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold53 SAMTools SNP 984556 984556 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 989253 989253 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 989257 989257 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold53 SAMTools SNP 990466 990466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold53 SAMTools SNP 990730 990730 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold53 SAMTools SNP 990826 990826 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 990859 990859 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 991446 991446 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 991481 991481 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.055%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold53 SAMTools SNP 992006 992006 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C245:99 scaffold53 SAMTools SNP 992040 992040 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.34%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold53 SAMTools SNP 992042 992042 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold53 SAMTools SNP 992377 992377 92 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C63%2C0:99 scaffold53 SAMTools SNP 992555 992555 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C3.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C210:99 scaffold53 SAMTools SNP 993040 993040 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C162:99 scaffold53 SAMTools SNP 993076 993076 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold53 SAMTools SNP 993078 993078 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold53 SAMTools SNP 994055 994055 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold53 SAMTools SNP 996478 996478 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold53 SAMTools SNP 996722 996722 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold53 SAMTools SNP 996755 996755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold53 SAMTools SNP 996803 996803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold53 SAMTools SNP 997537 997537 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C27%2C41%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 997546 997546 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C21%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 998111 998111 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C34%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0002%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 998733 998733 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C20%2C128%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C0.2%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold53 SAMTools SNP 999899 999899 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C123%2C0%2C83%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.00067%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold53 SAMTools SNP 999927 999927 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C0%2C13%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.19%2C1%2C1%2C4.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold53 SAMTools SNP 999938 999938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold53 SAMTools SNP 1001302 1001302 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold53 SAMTools SNP 1034819 1034819 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold53 SAMTools SNP 1034942 1034942 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 1034950 1034950 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold53 SAMTools SNP 1053037 1053037 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold53 SAMTools SNP 1061793 1061793 43 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D44%3BFQ%3D46%3BPV4%3D0.44%2C0.37%2C0.045%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C193:76 scaffold53 SAMTools SNP 1090903 1090903 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold53 SAMTools SNP 1090935 1090935 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold53 SAMTools SNP 1091676 1091676 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold53 SAMTools SNP 1093285 1093285 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold53 SAMTools SNP 1093620 1093620 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold53 SAMTools SNP 1093791 1093791 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.2e-09%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C171:40 scaffold53 SAMTools SNP 1095026 1095026 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 1095035 1095035 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold53 SAMTools SNP 1095325 1095325 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C27:31 scaffold53 SAMTools SNP 1095625 1095625 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold53 SAMTools SNP 1095653 1095653 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 1096309 1096309 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold53 SAMTools SNP 1096332 1096332 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.074%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C61:34 scaffold53 SAMTools SNP 1096595 1096595 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.052%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold53 SAMTools SNP 1096821 1096821 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold53 SAMTools SNP 1096838 1096838 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold53 SAMTools SNP 1096874 1096874 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold53 SAMTools SNP 1099069 1099069 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.43%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold53 SAMTools SNP 1099475 1099475 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold53 SAMTools SNP 1099603 1099603 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold53 SAMTools SNP 1105507 1105507 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0039%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold53 SAMTools SNP 1105541 1105541 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold53 SAMTools SNP 1106181 1106181 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold53 SAMTools SNP 1121372 1121372 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-3.68%3BPV4%3D1%2C0.029%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C26:30 scaffold53 SAMTools SNP 1132454 1132454 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold53 SAMTools SNP 1138655 1138655 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0.15%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold53 SAMTools SNP 1142041 1142041 67.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold53 SAMTools SNP 1142238 1142238 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C9%2C13%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.067%2C4.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold53 SAMTools SNP 1142833 1142833 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C35%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.21%2C4.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold53 SAMTools SNP 1149210 1149210 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.17%2C2e-10%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C99:83 scaffold53 SAMTools SNP 1177619 1177619 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C5e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C154:99 scaffold53 SAMTools SNP 1177652 1177652 64.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold53 SAMTools SNP 1178228 1178228 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C16%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold53 SAMTools SNP 1210463 1210463 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold53 SAMTools SNP 1210655 1210655 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0059%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C88:55 scaffold531 SAMTools SNP 3955 3955 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold531 SAMTools SNP 5418 5418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold531 SAMTools SNP 5747 5747 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C71%2C3%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold531 SAMTools SNP 5960 5960 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold531 SAMTools SNP 8248 8248 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C33%2C0:59 scaffold531 SAMTools SNP 11033 11033 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C108%2C1%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold531 SAMTools SNP 11106 11106 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C7%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C216:85 scaffold531 SAMTools SNP 54141 54141 19.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C13%2C0:22 scaffold531 SAMTools SNP 54246 54246 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C93%2C0:99 scaffold531 SAMTools SNP 73949 73949 25.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold531 SAMTools SNP 103749 103749 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C42%2C0:81 scaffold531 SAMTools SNP 103862 103862 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C32%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold531 SAMTools SNP 103924 103924 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C36%2C0:69 scaffold531 SAMTools SNP 113062 113062 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 113205 113205 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold531 SAMTools SNP 119654 119654 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold531 SAMTools SNP 128680 128680 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C214:99 scaffold531 SAMTools SNP 128726 128726 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C2%2C221%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold531 SAMTools SNP 129243 129243 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C216%2C27%2C80%3BMQ%3D50%3BFQ%3D138%3BPV4%3D2.2e-05%2C8.7e-110%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold531 SAMTools SNP 129273 129273 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold531 SAMTools SNP 129495 129495 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold531 SAMTools SNP 129799 129799 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold531 SAMTools SNP 129806 129806 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold531 SAMTools SNP 129901 129901 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C160%2C0:99 scaffold531 SAMTools SNP 131208 131208 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C17%2C12%2C116%3BMQ%3D49%3BFQ%3D8.65%3BPV4%3D1.1e-08%2C8.1e-131%2C0.2%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold531 SAMTools SNP 131267 131267 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D47%3BFQ%3D17.1%3BPV4%3D0.036%2C0.053%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C157:47 scaffold531 SAMTools SNP 131373 131373 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C99%2C0:99 scaffold531 SAMTools SNP 133326 133326 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold531 SAMTools SNP 134047 134047 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold531 SAMTools SNP 134416 134416 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold531 SAMTools SNP 134431 134431 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold531 SAMTools SNP 134940 134940 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C168:99 scaffold531 SAMTools SNP 135563 135563 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold531 SAMTools SNP 135633 135633 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C184:93 scaffold531 SAMTools SNP 136097 136097 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold531 SAMTools SNP 136624 136624 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold531 SAMTools SNP 138461 138461 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C40:43 scaffold531 SAMTools SNP 138568 138568 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold531 SAMTools SNP 138943 138943 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold531 SAMTools SNP 139001 139001 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold531 SAMTools SNP 139392 139392 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C35:38 scaffold531 SAMTools SNP 178306 178306 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 178384 178384 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C63:66 scaffold531 SAMTools SNP 178390 178390 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.45%2C0.012%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold531 SAMTools SNP 178457 178457 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.2%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C196:77 scaffold531 SAMTools SNP 178502 178502 37.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold531 SAMTools SNP 178713 178713 43.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold531 SAMTools SNP 179089 179089 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 179095 179095 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold531 SAMTools SNP 195763 195763 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold531 SAMTools SNP 195850 195850 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C37:40 scaffold531 SAMTools SNP 195876 195876 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold531 SAMTools SNP 196560 196560 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold531 SAMTools SNP 196631 196631 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold531 SAMTools SNP 198899 198899 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold531 SAMTools SNP 198945 198945 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold531 SAMTools SNP 198953 198953 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.38%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold531 SAMTools SNP 207607 207607 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold531 SAMTools SNP 238270 238270 20.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold531 SAMTools SNP 258785 258785 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C35%2C6%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.49%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold531 SAMTools SNP 258901 258901 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C13%2C0%3BMQ%3D32%3BFQ%3D91%3BPV4%3D0.32%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold531 SAMTools SNP 258907 258907 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C13%2C0%3BMQ%3D32%3BFQ%3D84%3BPV4%3D0.32%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold531 SAMTools SNP 259362 259362 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D24%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C51%2C0:99 scaffold531 SAMTools SNP 260420 260420 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C4%2C2%3BMQ%3D45%3BFQ%3D165%3BPV4%3D0.0063%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C193:99 scaffold531 SAMTools SNP 264746 264746 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D31%3BFQ%3D6.2%3BPV4%3D0.49%2C1%2C0.16%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C131:31 scaffold531 SAMTools SNP 264755 264755 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D37%3BFQ%3D-5.45%3BPV4%3D1%2C0.34%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C23:26 scaffold531 SAMTools SNP 264770 264770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C7%3BMQ%3D43%3BFQ%3D-31%3BPV4%3D0.44%2C0.33%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold531 SAMTools SNP 265141 265141 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold531 SAMTools SNP 265171 265171 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold531 SAMTools SNP 265237 265237 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold531 SAMTools SNP 265294 265294 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C2%2C33%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold531 SAMTools SNP 265958 265958 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C59%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.54%2C0.006%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold531 SAMTools SNP 266109 266109 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold531 SAMTools SNP 266866 266866 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C27%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold531 SAMTools SNP 267424 267424 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold531 SAMTools SNP 267977 267977 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold531 SAMTools SNP 267980 267980 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.082%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold531 SAMTools SNP 267988 267988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold531 SAMTools SNP 270141 270141 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold531 SAMTools SNP 270147 270147 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold531 SAMTools SNP 270180 270180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C11%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.22%2C0.07%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C120:99 scaffold531 SAMTools SNP 270186 270186 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold531 SAMTools SNP 270815 270815 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C2%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.18%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold531 SAMTools SNP 270869 270869 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C24%2C0:45 scaffold531 SAMTools SNP 270893 270893 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold531 SAMTools SNP 270946 270946 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C208:99 scaffold531 SAMTools SNP 270968 270968 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C25%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.13%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold531 SAMTools SNP 271211 271211 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold531 SAMTools SNP 271732 271732 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C25%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.29%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold531 SAMTools SNP 271801 271801 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold531 SAMTools SNP 271959 271959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold531 SAMTools SNP 271986 271986 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.021%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold531 SAMTools SNP 272028 272028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C13%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.54%2C0.017%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold531 SAMTools SNP 272073 272073 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C21%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C106:99 scaffold531 SAMTools SNP 273995 273995 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold531 SAMTools SNP 275492 275492 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold531 SAMTools SNP 276145 276145 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold531 SAMTools SNP 277042 277042 69.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold531 SAMTools SNP 277479 277479 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold531 SAMTools SNP 277491 277491 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 277706 277706 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold531 SAMTools SNP 278149 278149 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold531 SAMTools SNP 278337 278337 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold531 SAMTools SNP 278555 278555 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 278565 278565 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold531 SAMTools SNP 279105 279105 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.8%3BPV4%3D1%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C77:80 scaffold531 SAMTools SNP 279326 279326 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold531 SAMTools SNP 279329 279329 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold531 SAMTools SNP 279867 279867 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 279892 279892 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold531 SAMTools SNP 281063 281063 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold531 SAMTools SNP 281065 281065 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold531 SAMTools SNP 281095 281095 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold531 SAMTools SNP 281107 281107 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.31%2C0.29%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C206:99 scaffold531 SAMTools SNP 281958 281958 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold531 SAMTools SNP 281964 281964 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold531 SAMTools SNP 282548 282548 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C7%3BMQ%3D49%3BFQ%3D101%3BPV4%3D0.0001%2C0.0082%2C0.09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold531 SAMTools SNP 282696 282696 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold531 SAMTools SNP 283944 283944 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold531 SAMTools SNP 283969 283969 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold531 SAMTools SNP 284396 284396 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C152:99 scaffold531 SAMTools SNP 284483 284483 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold531 SAMTools SNP 288848 288848 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.24%2C1%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold531 SAMTools SNP 289882 289882 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C2%3BMQ%3D44%3BFQ%3D142%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold531 SAMTools SNP 289907 289907 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C30%2C6%2C0%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D0.0061%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold531 SAMTools SNP 291635 291635 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C29%3BMQ%3D48%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold531 SAMTools SNP 291705 291705 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C237:94 scaffold531 SAMTools SNP 292154 292154 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold531 SAMTools SNP 292157 292157 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C22%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.46%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold531 SAMTools SNP 292193 292193 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.2e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold531 SAMTools SNP 292598 292598 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold531 SAMTools SNP 304969 304969 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold531 SAMTools SNP 305450 305450 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C39%2C0:75 scaffold532 SAMTools SNP 12416 12416 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 12499 12499 36.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold532 SAMTools SNP 12573 12573 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold532 SAMTools SNP 12592 12592 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold532 SAMTools SNP 13934 13934 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.24%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold532 SAMTools SNP 22901 22901 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold532 SAMTools SNP 41183 41183 73 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C86%2C77%2C106%2C0%2C100:16 scaffold532 SAMTools SNP 41345 41345 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C235:99 scaffold532 SAMTools SNP 42054 42054 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0027%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold532 SAMTools SNP 42729 42729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold532 SAMTools SNP 43489 43489 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold532 SAMTools SNP 43529 43529 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.27%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold532 SAMTools SNP 43594 43594 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C12%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold532 SAMTools SNP 44102 44102 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C12%2C22%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1.7e-05%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold532 SAMTools SNP 44128 44128 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold532 SAMTools SNP 44184 44184 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C11%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold532 SAMTools SNP 44325 44325 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.2%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold532 SAMTools SNP 44340 44340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold532 SAMTools SNP 44883 44883 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold532 SAMTools SNP 44926 44926 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold532 SAMTools SNP 44983 44983 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold532 SAMTools SNP 45214 45214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold532 SAMTools SNP 45259 45259 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold532 SAMTools SNP 47027 47027 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 47139 47139 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.48%2C2.2e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold532 SAMTools SNP 48311 48311 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 48356 48356 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold532 SAMTools SNP 48638 48638 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold532 SAMTools SNP 48644 48644 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold532 SAMTools SNP 48650 48650 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold532 SAMTools SNP 48692 48692 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold532 SAMTools SNP 48919 48919 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold532 SAMTools SNP 48997 48997 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold532 SAMTools SNP 49000 49000 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold532 SAMTools SNP 49012 49012 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.019%2C0.035%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C207:99 scaffold532 SAMTools SNP 49513 49513 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.5e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold532 SAMTools SNP 49588 49588 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold532 SAMTools SNP 51042 51042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold532 SAMTools SNP 51273 51273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold532 SAMTools SNP 51286 51286 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold532 SAMTools SNP 51376 51376 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.54%3BPV4%3D1%2C0.049%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C50:36 scaffold532 SAMTools SNP 53148 53148 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.22%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold532 SAMTools SNP 53152 53152 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold532 SAMTools SNP 53181 53181 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold532 SAMTools SNP 53217 53217 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold532 SAMTools SNP 53655 53655 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold532 SAMTools SNP 53684 53684 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold532 SAMTools SNP 53770 53770 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold532 SAMTools SNP 53776 53776 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold532 SAMTools SNP 53984 53984 33.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold532 SAMTools SNP 54146 54146 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold532 SAMTools SNP 54290 54290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 54773 54773 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold532 SAMTools SNP 56147 56147 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold532 SAMTools SNP 56149 56149 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold532 SAMTools SNP 56161 56161 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.3%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold532 SAMTools SNP 56537 56537 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.015%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C238:99 scaffold532 SAMTools SNP 56567 56567 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C197:99 scaffold532 SAMTools SNP 56892 56892 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold532 SAMTools SNP 56934 56934 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold532 SAMTools SNP 56983 56983 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C48%2C0:93 scaffold532 SAMTools SNP 57060 57060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 57084 57084 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.12%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold532 SAMTools SNP 57707 57707 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C216:99 scaffold532 SAMTools SNP 57710 57710 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold532 SAMTools SNP 57716 57716 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold532 SAMTools SNP 58132 58132 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 58143 58143 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 58158 58158 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold532 SAMTools SNP 58250 58250 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold532 SAMTools SNP 59050 59050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold532 SAMTools SNP 59301 59301 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold532 SAMTools SNP 63066 63066 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold532 SAMTools SNP 84887 84887 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.31%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold532 SAMTools SNP 86301 86301 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold532 SAMTools SNP 88569 88569 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold532 SAMTools SNP 88572 88572 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C5%2C11%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.7%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold532 SAMTools SNP 89194 89194 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold532 SAMTools SNP 89233 89233 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.47%2C0.41%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C246:99 scaffold532 SAMTools SNP 90199 90199 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold532 SAMTools SNP 93403 93403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold532 SAMTools SNP 93463 93463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C13%3BMQ%3D49%3BFQ%3D-48%3BPV4%3D1%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold532 SAMTools SNP 94153 94153 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold532 SAMTools SNP 94199 94199 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold532 SAMTools SNP 94222 94222 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C107:80 scaffold532 SAMTools SNP 94854 94854 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold532 SAMTools SNP 94866 94866 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold532 SAMTools SNP 94929 94929 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold532 SAMTools SNP 95308 95308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.09%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C97:99 scaffold532 SAMTools SNP 95460 95460 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold532 SAMTools SNP 95502 95502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold532 SAMTools SNP 95780 95780 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold532 SAMTools SNP 95783 95783 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.43%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold532 SAMTools SNP 95801 95801 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C217:99 scaffold532 SAMTools SNP 95852 95852 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C63%2C0:99 scaffold532 SAMTools SNP 96282 96282 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold532 SAMTools SNP 96330 96330 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold532 SAMTools SNP 96390 96390 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold532 SAMTools SNP 96393 96393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold532 SAMTools SNP 97371 97371 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.2%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C214:99 scaffold532 SAMTools SNP 97373 97373 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold532 SAMTools SNP 97434 97434 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.0035%2C0.12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C237:99 scaffold532 SAMTools SNP 97672 97672 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold532 SAMTools SNP 98144 98144 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.06%2C0.3%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold532 SAMTools SNP 98565 98565 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold532 SAMTools SNP 98809 98809 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold532 SAMTools SNP 99447 99447 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold532 SAMTools SNP 99477 99477 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold532 SAMTools SNP 99823 99823 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C112:71 scaffold532 SAMTools SNP 100333 100333 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.55%2C0.0009%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold532 SAMTools SNP 100337 100337 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold532 SAMTools SNP 100409 100409 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold532 SAMTools SNP 100727 100727 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold532 SAMTools SNP 100781 100781 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0128%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold532 SAMTools SNP 100796 100796 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold532 SAMTools SNP 101232 101232 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold532 SAMTools SNP 101238 101238 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0055%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold532 SAMTools SNP 101545 101545 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold532 SAMTools SNP 101599 101599 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold532 SAMTools SNP 101629 101629 124 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold532 SAMTools SNP 107278 107278 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold532 SAMTools SNP 107305 107305 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold532 SAMTools SNP 107845 107845 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold532 SAMTools SNP 107869 107869 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold532 SAMTools SNP 108119 108119 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold532 SAMTools SNP 108370 108370 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold532 SAMTools SNP 108675 108675 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0123%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C0.0014%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold532 SAMTools SNP 108684 108684 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold532 SAMTools SNP 108738 108738 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold532 SAMTools SNP 108943 108943 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C198:42 scaffold532 SAMTools SNP 109709 109709 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold532 SAMTools SNP 110608 110608 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C12%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold532 SAMTools SNP 113251 113251 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold532 SAMTools SNP 113275 113275 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold532 SAMTools SNP 115902 115902 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C63%2C0:99 scaffold532 SAMTools SNP 116124 116124 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold532 SAMTools SNP 118382 118382 52.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold532 SAMTools SNP 118952 118952 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold532 SAMTools SNP 118954 118954 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C213:99 scaffold532 SAMTools SNP 122339 122339 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D9%2C1%2C12%2C5%3BMQ%3D24%3BFQ%3D-4.75%3BPV4%3D0.36%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C24:27 scaffold532 SAMTools SNP 122687 122687 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C22%2C11%2C0%3BMQ%3D44%3BFQ%3D40%3BPV4%3D0.012%2C3.7e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold532 SAMTools SNP 122700 122700 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C13%3BMQ%3D41%3BFQ%3D209%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold532 SAMTools SNP 123951 123951 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold532 SAMTools SNP 125918 125918 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.69%2C0.003%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold532 SAMTools SNP 128992 128992 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C17:20 scaffold532 SAMTools SNP 129295 129295 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold532 SAMTools SNP 136899 136899 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C51:54 scaffold532 SAMTools SNP 136920 136920 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold532 SAMTools SNP 141231 141231 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold532 SAMTools SNP 143086 143086 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold532 SAMTools SNP 143623 143623 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold532 SAMTools SNP 145483 145483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 150449 150449 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 151826 151826 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 151858 151858 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 169652 169652 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D23.7%3BPV4%3D0.066%2C3.8e-13%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C51:54 scaffold532 SAMTools SNP 172910 172910 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold532 SAMTools SNP 172952 172952 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold532 SAMTools SNP 173322 173322 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold532 SAMTools SNP 173323 173323 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold532 SAMTools SNP 173990 173990 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.093%2C0.092%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold532 SAMTools SNP 175101 175101 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold532 SAMTools SNP 183270 183270 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold532 SAMTools SNP 184310 184310 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 184374 184374 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold532 SAMTools SNP 184412 184412 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold532 SAMTools SNP 184422 184422 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold532 SAMTools SNP 184439 184439 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold532 SAMTools SNP 189189 189189 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C9%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C0%2C0:3 scaffold532 SAMTools SNP 189204 189204 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold532 SAMTools SNP 191046 191046 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C4%3BMQ%3D42%3BFQ%3D8.65%3BPV4%3D0.29%2C0.11%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C249:36 scaffold532 SAMTools SNP 192304 192304 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold532 SAMTools SNP 192322 192322 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.28%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold532 SAMTools SNP 192917 192917 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C12%2C19%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.29%2C1.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold532 SAMTools SNP 192995 192995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold532 SAMTools SNP 193128 193128 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 193157 193157 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold532 SAMTools SNP 193999 193999 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold532 SAMTools SNP 195083 195083 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold532 SAMTools SNP 195444 195444 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold532 SAMTools SNP 195816 195816 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold532 SAMTools SNP 196123 196123 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold532 SAMTools SNP 219475 219475 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold532 SAMTools SNP 219476 219476 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold532 SAMTools SNP 219490 219490 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.021%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold532 SAMTools SNP 221296 221296 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold532 SAMTools SNP 221860 221860 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold532 SAMTools SNP 221868 221868 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold532 SAMTools SNP 221973 221973 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold532 SAMTools SNP 221995 221995 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold532 SAMTools SNP 222186 222186 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold532 SAMTools SNP 222446 222446 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold533 SAMTools SNP 448 448 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold533 SAMTools SNP 480 480 186 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C42%2C0:81 scaffold533 SAMTools SNP 104492 104492 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0015%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold533 SAMTools SNP 104499 104499 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold533 SAMTools SNP 105785 105785 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold533 SAMTools SNP 105812 105812 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00023%2C0.0063%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C140:99 scaffold533 SAMTools SNP 105828 105828 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold533 SAMTools SNP 105837 105837 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold533 SAMTools SNP 106595 106595 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold533 SAMTools SNP 107025 107025 46.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold534 SAMTools SNP 1113 1113 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C121:99 scaffold534 SAMTools SNP 2772 2772 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.61%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C175:99 scaffold534 SAMTools SNP 2832 2832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.23%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold534 SAMTools SNP 4565 4565 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold534 SAMTools SNP 4736 4736 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C89%2C2%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold534 SAMTools SNP 6118 6118 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C18%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.75%2C5.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold534 SAMTools SNP 26265 26265 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold534 SAMTools SNP 33379 33379 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.0072%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold534 SAMTools SNP 38040 38040 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C82%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold534 SAMTools SNP 38097 38097 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C130:99 scaffold534 SAMTools SNP 38102 38102 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold534 SAMTools SNP 82103 82103 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold534 SAMTools SNP 86388 86388 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold534 SAMTools SNP 86435 86435 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.12%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C204:99 scaffold534 SAMTools SNP 86579 86579 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold534 SAMTools SNP 86607 86607 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold534 SAMTools SNP 88073 88073 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold534 SAMTools SNP 88730 88730 45.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold534 SAMTools SNP 90933 90933 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold534 SAMTools SNP 91134 91134 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C15%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C111%2C0:99 scaffold534 SAMTools SNP 91521 91521 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C129%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C255%2C0:99 scaffold534 SAMTools SNP 91706 91706 204 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C49%3BMQ%3D49%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C154%2C0%2C235%2C120%2C229:99 scaffold534 SAMTools SNP 91782 91782 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C72%2C0:99 scaffold534 SAMTools SNP 91809 91809 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C60%2C0:99 scaffold534 SAMTools SNP 91943 91943 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D808%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C789%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold534 SAMTools SNP 92797 92797 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C37%2C23%2C43%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D8e-05%2C6.5e-166%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold534 SAMTools SNP 92960 92960 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C6.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C118:61 scaffold534 SAMTools SNP 96084 96084 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold534 SAMTools SNP 96260 96260 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold534 SAMTools SNP 96309 96309 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold534 SAMTools SNP 102511 102511 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold534 SAMTools SNP 102633 102633 5.44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold535 SAMTools SNP 119 119 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 40214 40214 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold535 SAMTools SNP 40217 40217 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold535 SAMTools SNP 40466 40466 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold535 SAMTools SNP 71752 71752 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold535 SAMTools SNP 118763 118763 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold535 SAMTools SNP 120977 120977 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 120979 120979 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 121485 121485 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 125197 125197 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold535 SAMTools SNP 125222 125222 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 125558 125558 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold535 SAMTools SNP 129434 129434 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold535 SAMTools SNP 129819 129819 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold535 SAMTools SNP 129921 129921 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 130156 130156 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold535 SAMTools SNP 138700 138700 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 138865 138865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 138874 138874 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 142035 142035 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold535 SAMTools SNP 146257 146257 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold535 SAMTools SNP 146796 146796 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C1:4 scaffold535 SAMTools SNP 146886 146886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C6%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.052%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 147470 147470 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 148610 148610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold535 SAMTools SNP 148619 148619 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold535 SAMTools SNP 151189 151189 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold535 SAMTools SNP 151203 151203 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.46%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C246:70 scaffold535 SAMTools SNP 151439 151439 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 154488 154488 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 154510 154510 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 154733 154733 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold535 SAMTools SNP 158129 158129 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C223:98 scaffold535 SAMTools SNP 158368 158368 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C208:44 scaffold535 SAMTools SNP 162498 162498 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C241:99 scaffold535 SAMTools SNP 162536 162536 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C0.05%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold535 SAMTools SNP 173507 173507 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold535 SAMTools SNP 178705 178705 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C29%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 178730 178730 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold535 SAMTools SNP 178732 178732 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold535 SAMTools SNP 178762 178762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold535 SAMTools SNP 179459 179459 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C42%2C0:81 scaffold535 SAMTools SNP 180361 180361 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.47%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C162:44 scaffold535 SAMTools SNP 181102 181102 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.24%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold535 SAMTools SNP 181173 181173 207 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C10%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.055%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold535 SAMTools SNP 181572 181572 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 181654 181654 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 181758 181758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 182500 182500 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold535 SAMTools SNP 182790 182790 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C2.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 183551 183551 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C36%2C0:69 scaffold535 SAMTools SNP 183566 183566 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.083%2C0.0094%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C176:52 scaffold535 SAMTools SNP 183583 183583 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 183921 183921 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C246:91 scaffold535 SAMTools SNP 184020 184020 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.044%2C0.00098%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold535 SAMTools SNP 184062 184062 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold535 SAMTools SNP 184435 184435 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold535 SAMTools SNP 184455 184455 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 184456 184456 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 184522 184522 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C5.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C241:28 scaffold535 SAMTools SNP 188713 188713 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold535 SAMTools SNP 189652 189652 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 199784 199784 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 199834 199834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 203182 203182 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold535 SAMTools SNP 203191 203191 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold535 SAMTools SNP 204499 204499 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.0011%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold535 SAMTools SNP 204518 204518 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C3%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.063%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold535 SAMTools SNP 204521 204521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 204530 204530 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.49%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 206285 206285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold535 SAMTools SNP 206942 206942 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 206954 206954 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 208210 208210 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 208295 208295 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold535 SAMTools SNP 208569 208569 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold535 SAMTools SNP 208596 208596 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold535 SAMTools SNP 208605 208605 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold535 SAMTools SNP 209620 209620 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold535 SAMTools SNP 209749 209749 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 210520 210520 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold535 SAMTools SNP 211995 211995 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0025%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold535 SAMTools SNP 214122 214122 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold535 SAMTools SNP 215141 215141 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.57%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold535 SAMTools SNP 215156 215156 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.17%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold535 SAMTools SNP 215569 215569 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C2%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.57%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold535 SAMTools SNP 216097 216097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C39%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 216142 216142 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C40%2C3%2C10%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.22%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold535 SAMTools SNP 216153 216153 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.18%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold535 SAMTools SNP 216537 216537 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold535 SAMTools SNP 216538 216538 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C178:31 scaffold535 SAMTools SNP 216539 216539 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold535 SAMTools SNP 218480 218480 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.56%2C2.2e-05%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold535 SAMTools SNP 218500 218500 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C11%2C19%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.71%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold535 SAMTools SNP 218880 218880 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold535 SAMTools SNP 219629 219629 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold535 SAMTools SNP 219641 219641 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold535 SAMTools SNP 219833 219833 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.00021%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C134:64 scaffold535 SAMTools SNP 228094 228094 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 228369 228369 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold535 SAMTools SNP 232614 232614 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold535 SAMTools SNP 239923 239923 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C104:70 scaffold535 SAMTools SNP 240366 240366 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold535 SAMTools SNP 240381 240381 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C21%2C0:39 scaffold535 SAMTools SNP 240736 240736 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 243905 243905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold535 SAMTools SNP 244118 244118 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold535 SAMTools SNP 245334 245334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold535 SAMTools SNP 247659 247659 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold535 SAMTools SNP 247818 247818 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold535 SAMTools SNP 253690 253690 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C38:41 scaffold535 SAMTools SNP 266077 266077 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold535 SAMTools SNP 266098 266098 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold535 SAMTools SNP 278525 278525 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold535 SAMTools SNP 280779 280779 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 280964 280964 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 281089 281089 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 329659 329659 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold535 SAMTools SNP 329684 329684 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold535 SAMTools SNP 330412 330412 48.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold535 SAMTools SNP 330935 330935 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold535 SAMTools SNP 333254 333254 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold535 SAMTools SNP 333811 333811 75.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C14:17 scaffold535 SAMTools SNP 333919 333919 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 334400 334400 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold535 SAMTools SNP 334440 334440 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.11%2C9.5e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold535 SAMTools SNP 334463 334463 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C21%2C0:39 scaffold535 SAMTools SNP 335088 335088 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C15%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold535 SAMTools SNP 336194 336194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 336272 336272 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C77:80 scaffold535 SAMTools SNP 336320 336320 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold535 SAMTools SNP 336954 336954 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C54%2C0:99 scaffold535 SAMTools SNP 337878 337878 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C39%2C0:75 scaffold535 SAMTools SNP 337929 337929 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 338258 338258 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold535 SAMTools SNP 338273 338273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold535 SAMTools SNP 338746 338746 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C12%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold535 SAMTools SNP 339191 339191 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold535 SAMTools SNP 339877 339877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D0.27%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold535 SAMTools SNP 339902 339902 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold535 SAMTools SNP 340232 340232 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 375462 375462 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold535 SAMTools SNP 376250 376250 4.61 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C11%2C5%2C32%2C0%2C29:5 scaffold535 SAMTools SNP 376355 376355 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold535 SAMTools SNP 377209 377209 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 377223 377223 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold535 SAMTools SNP 377241 377241 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.094%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold535 SAMTools SNP 408652 408652 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 409062 409062 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold535 SAMTools SNP 409160 409160 7.59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold535 SAMTools SNP 409564 409564 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold535 SAMTools SNP 455206 455206 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 455235 455235 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 455284 455284 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold535 SAMTools SNP 457945 457945 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold535 SAMTools SNP 463234 463234 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold535 SAMTools SNP 464267 464267 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 464332 464332 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold535 SAMTools SNP 465033 465033 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 465210 465210 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold535 SAMTools SNP 472261 472261 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold535 SAMTools SNP 483802 483802 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D289%2C20%2C186%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 491977 491977 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C0%2C11%3BMQ%3D43%3BFQ%3D65%3BPV4%3D0.18%2C1%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C218:95 scaffold535 SAMTools SNP 493275 493275 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C7%2C4%3BMQ%3D45%3BFQ%3D150%3BPV4%3D0.0012%2C0.014%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold535 SAMTools SNP 498631 498631 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold535 SAMTools SNP 498891 498891 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold535 SAMTools SNP 500174 500174 29.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold535 SAMTools SNP 501944 501944 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold535 SAMTools SNP 501984 501984 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C22%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C250:99 scaffold535 SAMTools SNP 502645 502645 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 503261 503261 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold535 SAMTools SNP 504078 504078 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold535 SAMTools SNP 504120 504120 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold535 SAMTools SNP 504124 504124 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0025%2C1%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold535 SAMTools SNP 505249 505249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold535 SAMTools SNP 505289 505289 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 506678 506678 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold535 SAMTools SNP 508225 508225 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D45%3BFQ%3D6.2%3BPV4%3D1%2C0.0072%2C0.0016%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C237:31 scaffold535 SAMTools SNP 508245 508245 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.081%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C242:31 scaffold535 SAMTools SNP 509347 509347 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold535 SAMTools SNP 509451 509451 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold535 SAMTools SNP 510063 510063 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold535 SAMTools SNP 510079 510079 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 511090 511090 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C46%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold535 SAMTools SNP 512101 512101 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C21%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold535 SAMTools SNP 512157 512157 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 512245 512245 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold535 SAMTools SNP 514048 514048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold535 SAMTools SNP 514697 514697 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold535 SAMTools SNP 536757 536757 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold535 SAMTools SNP 566291 566291 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold535 SAMTools SNP 566299 566299 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold535 SAMTools SNP 571497 571497 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold535 SAMTools SNP 591951 591951 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold535 SAMTools SNP 591973 591973 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold535 SAMTools SNP 593486 593486 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold535 SAMTools SNP 608087 608087 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold535 SAMTools SNP 608199 608199 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold535 SAMTools SNP 608247 608247 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 608628 608628 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C10%3BMQ%3D48%3BFQ%3D9.53%3BPV4%3D0.0001%2C5.3e-23%2C0.096%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C209:37 scaffold535 SAMTools SNP 608639 608639 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C10%2C0%3BMQ%3D47%3BFQ%3D45%3BPV4%3D0.00055%2C1.2e-21%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold535 SAMTools SNP 608646 608646 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold535 SAMTools SNP 609387 609387 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold535 SAMTools SNP 609399 609399 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 610602 610602 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 611310 611310 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C95%2C16%2C49%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.72%2C3.6e-156%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold535 SAMTools SNP 611444 611444 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C54%2C0:99 scaffold535 SAMTools SNP 611445 611445 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.42%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C132:89 scaffold535 SAMTools SNP 611498 611498 112 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold535 SAMTools SNP 613700 613700 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C4%3BMQ%3D49%3BFQ%3D166%3BPV4%3D0.082%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold535 SAMTools SNP 615214 615214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C20%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold535 SAMTools SNP 616414 616414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold535 SAMTools SNP 617199 617199 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold535 SAMTools SNP 617223 617223 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold535 SAMTools SNP 617254 617254 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C3%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold535 SAMTools SNP 617327 617327 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C36%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold535 SAMTools SNP 617773 617773 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold535 SAMTools SNP 617944 617944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold535 SAMTools SNP 620885 620885 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold535 SAMTools SNP 621101 621101 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C6%2C46%2C2%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.47%2C6.4e-66%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold535 SAMTools SNP 621524 621524 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.026%2C1.4e-07%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold535 SAMTools SNP 621704 621704 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C26%2C2%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold535 SAMTools SNP 621713 621713 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C25%2C2%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold535 SAMTools SNP 624482 624482 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C5%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.23%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold535 SAMTools SNP 624951 624951 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold535 SAMTools SNP 624957 624957 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold535 SAMTools SNP 625032 625032 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold535 SAMTools SNP 625650 625650 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold535 SAMTools SNP 625999 625999 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold535 SAMTools SNP 626243 626243 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold535 SAMTools SNP 627300 627300 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C590%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold535 SAMTools SNP 627503 627503 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C60%2C72%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D3.9e-22%2C3.2e-118%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold535 SAMTools SNP 627548 627548 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C28%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold535 SAMTools SNP 627566 627566 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold535 SAMTools SNP 627685 627685 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D859%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00074%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C51:54 scaffold535 SAMTools SNP 627905 627905 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1210%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D538%2C75%2C545%2C39%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0011%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold535 SAMTools SNP 636619 636619 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold535 SAMTools SNP 637375 637375 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C57%2C0:99 scaffold535 SAMTools SNP 637666 637666 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold535 SAMTools SNP 637948 637948 28.5 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0%2C57%2C1%2C54:21 scaffold535 SAMTools SNP 638092 638092 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold536 SAMTools SNP 4500 4500 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold536 SAMTools SNP 4542 4542 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold536 SAMTools SNP 4593 4593 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold536 SAMTools SNP 6867 6867 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 7416 7416 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C36%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.035%2C3.1e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold536 SAMTools SNP 9001 9001 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold536 SAMTools SNP 9210 9210 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold536 SAMTools SNP 9414 9414 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold536 SAMTools SNP 9498 9498 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold536 SAMTools SNP 10435 10435 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold536 SAMTools SNP 10513 10513 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold536 SAMTools SNP 10520 10520 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold536 SAMTools SNP 11347 11347 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C35%2C1%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.41%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold536 SAMTools SNP 11359 11359 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C21%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.063%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold536 SAMTools SNP 12054 12054 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold536 SAMTools SNP 12120 12120 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold536 SAMTools SNP 12616 12616 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold536 SAMTools SNP 12925 12925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.001%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold536 SAMTools SNP 13913 13913 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold536 SAMTools SNP 14162 14162 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold536 SAMTools SNP 14189 14189 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold536 SAMTools SNP 14338 14338 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold536 SAMTools SNP 14429 14429 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold536 SAMTools SNP 14482 14482 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.45%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold536 SAMTools SNP 14666 14666 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold536 SAMTools SNP 14696 14696 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold536 SAMTools SNP 14710 14710 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold536 SAMTools SNP 27559 27559 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.00095%2C6e-15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C228:53 scaffold536 SAMTools SNP 27949 27949 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.9e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C32:35 scaffold536 SAMTools SNP 31539 31539 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C255%2C0:99 scaffold536 SAMTools SNP 31844 31844 204 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D399%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C345%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C255%2C0%2C237%2C255%2C234:99 scaffold536 SAMTools SNP 31904 31904 72.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1003%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C15%2C0:27 scaffold536 SAMTools SNP 31961 31961 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D886%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C75%2C0:99 scaffold536 SAMTools SNP 32221 32221 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C51%2C0:99 scaffold536 SAMTools SNP 32237 32237 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C63%2C0:99 scaffold536 SAMTools SNP 32273 32273 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C255%2C0:99 scaffold536 SAMTools SNP 32420 32420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C66%2C213%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-10%2C1%2C1%2C1.5e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 32435 32435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D538%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C382%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 33199 33199 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C240%2C5%2C135%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.044%2C1.5e-141%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold536 SAMTools SNP 33264 33264 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C32:35 scaffold536 SAMTools SNP 33267 33267 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C53:56 scaffold536 SAMTools SNP 34274 34274 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 34286 34286 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C26%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 35573 35573 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold536 SAMTools SNP 35591 35591 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold536 SAMTools SNP 35642 35642 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold536 SAMTools SNP 35643 35643 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold536 SAMTools SNP 36449 36449 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold536 SAMTools SNP 39002 39002 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C0%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 39071 39071 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C55%2C4%2C26%3BMQ%3D50%3BFQ%3D89%3BPV4%3D2.8e-05%2C8.5e-10%2C1%2C2.3e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold536 SAMTools SNP 42471 42471 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 42495 42495 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C268%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 45922 45922 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold536 SAMTools SNP 51862 51862 80.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold536 SAMTools SNP 51985 51985 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold536 SAMTools SNP 52022 52022 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold536 SAMTools SNP 52442 52442 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold536 SAMTools SNP 56371 56371 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C36%2C0:69 scaffold536 SAMTools SNP 56414 56414 86 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C42%2C0:81 scaffold536 SAMTools SNP 56507 56507 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold536 SAMTools SNP 57918 57918 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C63%2C0:99 scaffold536 SAMTools SNP 58172 58172 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C34%3BMQ%3D50%3BFQ%3D-157%3BPV4%3D0.41%2C1.7e-16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C130%2C0:99 scaffold536 SAMTools SNP 58181 58181 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C36%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold536 SAMTools SNP 58650 58650 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold536 SAMTools SNP 64789 64789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C17%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 64845 64845 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C50%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C154%2C0:99 scaffold536 SAMTools SNP 64992 64992 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold536 SAMTools SNP 67450 67450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 67461 67461 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C3%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold536 SAMTools SNP 67495 67495 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 68499 68499 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C33%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold536 SAMTools SNP 68526 68526 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C12%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.066%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold536 SAMTools SNP 68580 68580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold536 SAMTools SNP 68616 68616 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.61%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold536 SAMTools SNP 69605 69605 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C21%2C41%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 70080 70080 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C0%2C27%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.04%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold536 SAMTools SNP 70098 70098 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C1%2C35%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold536 SAMTools SNP 70139 70139 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C22%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C19%2C0:35 scaffold536 SAMTools SNP 71232 71232 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C13%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.086%2C4.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold536 SAMTools SNP 71400 71400 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C44%2C1%2C58%3BMQ%3D50%3BFQ%3D22%3BPV4%3D7.7e-10%2C2.6e-98%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold536 SAMTools SNP 71474 71474 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C72%2C0:99 scaffold536 SAMTools SNP 71646 71646 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C231:42 scaffold536 SAMTools SNP 71973 71973 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 72086 72086 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold536 SAMTools SNP 72191 72191 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D63%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C225:36 scaffold536 SAMTools SNP 72247 72247 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C1%2C27%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold536 SAMTools SNP 72248 72248 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C74%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.47%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold536 SAMTools SNP 72409 72409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C69%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.6e-08%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 72717 72717 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C63%2C0%2C11%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold536 SAMTools SNP 74103 74103 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold536 SAMTools SNP 77033 77033 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold536 SAMTools SNP 77043 77043 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold536 SAMTools SNP 77063 77063 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold536 SAMTools SNP 77317 77317 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold536 SAMTools SNP 77367 77367 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold536 SAMTools SNP 77402 77402 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.066%2C1.6e-07%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold536 SAMTools SNP 78371 78371 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C10%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.07%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 78376 78376 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 78396 78396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold536 SAMTools SNP 79767 79767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold536 SAMTools SNP 81019 81019 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C12%2C0:21 scaffold536 SAMTools SNP 81037 81037 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold536 SAMTools SNP 81089 81089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold536 SAMTools SNP 81857 81857 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold536 SAMTools SNP 81941 81941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold536 SAMTools SNP 82629 82629 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold536 SAMTools SNP 82738 82738 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold536 SAMTools SNP 83268 83268 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C22%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1e-44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C253:44 scaffold536 SAMTools SNP 83280 83280 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C59%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C178%2C0:99 scaffold536 SAMTools SNP 92789 92789 33.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold536 SAMTools SNP 96050 96050 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C38:41 scaffold536 SAMTools SNP 96089 96089 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold536 SAMTools SNP 96465 96465 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold536 SAMTools SNP 96472 96472 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.31%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold536 SAMTools SNP 96540 96540 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C32:35 scaffold536 SAMTools SNP 100037 100037 11.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D18%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C2%2C0:4 scaffold536 SAMTools SNP 100073 100073 13.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D0.14%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C4%2C0:7 scaffold536 SAMTools SNP 101586 101586 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold536 SAMTools SNP 101943 101943 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold536 SAMTools SNP 107312 107312 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold536 SAMTools SNP 107335 107335 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold536 SAMTools SNP 119098 119098 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.14%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C105:69 scaffold536 SAMTools SNP 119114 119114 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold54 SAMTools SNP 6037 6037 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 6044 6044 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 6131 6131 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 6141 6141 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 24811 24811 13.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold54 SAMTools SNP 56418 56418 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold54 SAMTools SNP 56444 56444 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold54 SAMTools SNP 56600 56600 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C251%2C7%2C74%3BMQ%3D50%3BFQ%3D34%3BPV4%3D4.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold54 SAMTools SNP 56842 56842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D558%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C113%2C356%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 57485 57485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C32%2C58%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 58210 58210 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C123%2C120%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 59949 59949 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C39%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold54 SAMTools SNP 60314 60314 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C16%2C24%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.04%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold54 SAMTools SNP 60445 60445 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C126%2C106%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-11%2C5.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 60782 60782 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C110%2C39%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 61254 61254 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1.7e-08%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold54 SAMTools SNP 62437 62437 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold54 SAMTools SNP 67895 67895 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold54 SAMTools SNP 67977 67977 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold54 SAMTools SNP 71663 71663 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold54 SAMTools SNP 76274 76274 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 90485 90485 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 90517 90517 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold54 SAMTools SNP 91480 91480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 91527 91527 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold54 SAMTools SNP 93219 93219 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold54 SAMTools SNP 93261 93261 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold54 SAMTools SNP 95627 95627 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold54 SAMTools SNP 95651 95651 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold54 SAMTools SNP 95917 95917 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 97305 97305 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 97566 97566 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold54 SAMTools SNP 97587 97587 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold54 SAMTools SNP 97632 97632 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold54 SAMTools SNP 99614 99614 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold54 SAMTools SNP 99635 99635 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold54 SAMTools SNP 99694 99694 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold54 SAMTools SNP 99738 99738 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold54 SAMTools SNP 99753 99753 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold54 SAMTools SNP 100169 100169 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold54 SAMTools SNP 100338 100338 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold54 SAMTools SNP 108077 108077 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold54 SAMTools SNP 111373 111373 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold54 SAMTools SNP 117104 117104 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 117687 117687 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold54 SAMTools SNP 119710 119710 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold54 SAMTools SNP 119718 119718 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold54 SAMTools SNP 119740 119740 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold54 SAMTools SNP 119821 119821 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold54 SAMTools SNP 119854 119854 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.45%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold54 SAMTools SNP 132095 132095 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold54 SAMTools SNP 132402 132402 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.5%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold54 SAMTools SNP 132451 132451 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold54 SAMTools SNP 132957 132957 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold54 SAMTools SNP 133060 133060 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C34%2C45%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 134541 134541 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C9%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 134544 134544 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C39%2C7%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 135084 135084 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D7.7e-07%2C2.2e-07%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold54 SAMTools SNP 135551 135551 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C24%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C4.8e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 138038 138038 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 138295 138295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 180571 180571 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 199156 199156 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 199622 199622 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.26%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C99:99 scaffold54 SAMTools SNP 201283 201283 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D38.5%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C66:68 scaffold54 SAMTools SNP 209004 209004 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold54 SAMTools SNP 210284 210284 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold54 SAMTools SNP 210591 210591 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold54 SAMTools SNP 210642 210642 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 214208 214208 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold54 SAMTools SNP 217264 217264 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 217466 217466 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.34%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C245:99 scaffold54 SAMTools SNP 217518 217518 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold54 SAMTools SNP 218813 218813 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.58%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C35:38 scaffold54 SAMTools SNP 219330 219330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold54 SAMTools SNP 220109 220109 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold54 SAMTools SNP 220491 220491 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C0.0083%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C151:88 scaffold54 SAMTools SNP 220501 220501 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold54 SAMTools SNP 220814 220814 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold54 SAMTools SNP 220862 220862 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold54 SAMTools SNP 221127 221127 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold54 SAMTools SNP 221155 221155 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold54 SAMTools SNP 225296 225296 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.46%2C0.058%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C168:41 scaffold54 SAMTools SNP 226434 226434 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold54 SAMTools SNP 234347 234347 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold54 SAMTools SNP 234870 234870 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold54 SAMTools SNP 236754 236754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold54 SAMTools SNP 237034 237034 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold54 SAMTools SNP 238641 238641 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold54 SAMTools SNP 239409 239409 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold54 SAMTools SNP 239449 239449 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold54 SAMTools SNP 239457 239457 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold54 SAMTools SNP 239951 239951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C1%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold54 SAMTools SNP 240250 240250 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold54 SAMTools SNP 240951 240951 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 240978 240978 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C63%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold54 SAMTools SNP 241015 241015 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C216:34 scaffold54 SAMTools SNP 241023 241023 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold54 SAMTools SNP 242986 242986 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C36%2C0:69 scaffold54 SAMTools SNP 245015 245015 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold54 SAMTools SNP 245033 245033 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold54 SAMTools SNP 246208 246208 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold54 SAMTools SNP 246319 246319 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C10%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold54 SAMTools SNP 246331 246331 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold54 SAMTools SNP 257145 257145 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold54 SAMTools SNP 257245 257245 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1%2C25%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold54 SAMTools SNP 273129 273129 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold54 SAMTools SNP 273716 273716 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold54 SAMTools SNP 276379 276379 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold54 SAMTools SNP 280076 280076 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold54 SAMTools SNP 280576 280576 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.22%2C0.058%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold54 SAMTools SNP 280630 280630 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C3.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold54 SAMTools SNP 281338 281338 8.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold54 SAMTools SNP 282128 282128 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold54 SAMTools SNP 284252 284252 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold54 SAMTools SNP 288538 288538 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold54 SAMTools SNP 288636 288636 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold54 SAMTools SNP 288655 288655 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 288679 288679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold54 SAMTools SNP 289832 289832 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold54 SAMTools SNP 290957 290957 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.5e-23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C236:66 scaffold54 SAMTools SNP 290975 290975 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C78%2C0:99 scaffold54 SAMTools SNP 291826 291826 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0212%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.45%2C1.4e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold54 SAMTools SNP 291842 291842 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold54 SAMTools SNP 291875 291875 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.51%2C0.066%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold54 SAMTools SNP 293366 293366 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold54 SAMTools SNP 293415 293415 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold54 SAMTools SNP 294923 294923 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold54 SAMTools SNP 307567 307567 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 307781 307781 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold54 SAMTools SNP 308078 308078 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C10%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.04%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold54 SAMTools SNP 308098 308098 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C39%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.32%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 309629 309629 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C65%3BMQ%3D50%3BFQ%3D-220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold54 SAMTools SNP 309809 309809 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C77:28 scaffold54 SAMTools SNP 314014 314014 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 322105 322105 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 323582 323582 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C44%2C52%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 324120 324120 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C60%2C8%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 324195 324195 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C53%2C13%2C17%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.011%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold54 SAMTools SNP 324211 324211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C135%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 324703 324703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C99%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.029%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 324852 324852 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold54 SAMTools SNP 324873 324873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C18%2C44%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.36%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 325647 325647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C17%2C61%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0027%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 325704 325704 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C37%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 325937 325937 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C23%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C37%2C0:71 scaffold54 SAMTools SNP 325960 325960 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold54 SAMTools SNP 325961 325961 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold54 SAMTools SNP 326024 326024 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold54 SAMTools SNP 328558 328558 6.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold54 SAMTools SNP 330190 330190 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C42%2C0:81 scaffold54 SAMTools SNP 332613 332613 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold54 SAMTools SNP 333758 333758 25.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold54 SAMTools SNP 365127 365127 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C0.00025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C85:37 scaffold54 SAMTools SNP 368012 368012 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.14%2C0.094%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold54 SAMTools SNP 368035 368035 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C150:99 scaffold54 SAMTools SNP 368102 368102 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold54 SAMTools SNP 368105 368105 21.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold54 SAMTools SNP 368174 368174 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 368177 368177 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 368406 368406 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.11%2C0.0044%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold54 SAMTools SNP 368688 368688 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold54 SAMTools SNP 369237 369237 42 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C207%2C180%2C214%2C0%2C193:51 scaffold54 SAMTools SNP 369282 369282 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 369644 369644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C29%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold54 SAMTools SNP 369704 369704 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 370377 370377 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold54 SAMTools SNP 370392 370392 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold54 SAMTools SNP 373585 373585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold54 SAMTools SNP 373588 373588 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C0.28%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold54 SAMTools SNP 374220 374220 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00014%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold54 SAMTools SNP 374256 374256 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold54 SAMTools SNP 377638 377638 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C11%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.02%2C0.25%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold54 SAMTools SNP 379392 379392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C2%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 379411 379411 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C51%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1.5e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C251:99 scaffold54 SAMTools SNP 379854 379854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C53%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold54 SAMTools SNP 385825 385825 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C87%2C0:99 scaffold54 SAMTools SNP 386381 386381 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C30%2C0:57 scaffold54 SAMTools SNP 387766 387766 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold54 SAMTools SNP 389536 389536 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 389611 389611 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 395746 395746 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold54 SAMTools SNP 397745 397745 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold54 SAMTools SNP 398012 398012 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold54 SAMTools SNP 398047 398047 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 398140 398140 226 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold54 SAMTools SNP 405421 405421 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold54 SAMTools SNP 406249 406249 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold54 SAMTools SNP 406280 406280 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold54 SAMTools SNP 407283 407283 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold54 SAMTools SNP 408582 408582 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 417229 417229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C2%2C39%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.05%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 417277 417277 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-08%2C0.078%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 418109 418109 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C0%2C23%3BMQ%3D50%3BFQ%3D204%3BPV4%3D6.3e-08%2C1%2C1%2C3.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold54 SAMTools SNP 418612 418612 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C1%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.001%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold54 SAMTools SNP 418674 418674 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold54 SAMTools SNP 419013 419013 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C36%2C18%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0014%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold54 SAMTools SNP 420330 420330 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 422072 422072 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold54 SAMTools SNP 422256 422256 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold54 SAMTools SNP 422801 422801 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold54 SAMTools SNP 422828 422828 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.093%2C0.21%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold54 SAMTools SNP 422843 422843 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 422906 422906 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.022%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 424561 424561 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 424999 424999 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.14%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 425027 425027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold54 SAMTools SNP 425054 425054 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C6.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C107:42 scaffold54 SAMTools SNP 425680 425680 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C33%2C3%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.14%2C0.27%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold54 SAMTools SNP 425736 425736 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C7%2C27%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C7.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold54 SAMTools SNP 425808 425808 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C12%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 426842 426842 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold54 SAMTools SNP 426860 426860 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold54 SAMTools SNP 426878 426878 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold54 SAMTools SNP 427444 427444 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.094%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold54 SAMTools SNP 427449 427449 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold54 SAMTools SNP 427495 427495 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold54 SAMTools SNP 427499 427499 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold54 SAMTools SNP 429556 429556 91.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold54 SAMTools SNP 429599 429599 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C45%2C0:87 scaffold54 SAMTools SNP 429929 429929 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold54 SAMTools SNP 429989 429989 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D45%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold54 SAMTools SNP 430010 430010 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C1%2C3%3BMQ%3D45%3BFQ%3D27%3BPV4%3D0.061%2C0.024%2C0.058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold54 SAMTools SNP 431242 431242 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C36%2C0:69 scaffold54 SAMTools SNP 432115 432115 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C5%3BMQ%3D39%3BFQ%3D21%3BPV4%3D1%2C0.016%2C0.018%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold54 SAMTools SNP 432691 432691 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C5%3BMQ%3D31%3BFQ%3D27%3BPV4%3D0.66%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C174:57 scaffold54 SAMTools SNP 432741 432741 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 433100 433100 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.62%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold54 SAMTools SNP 433142 433142 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C11%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold54 SAMTools SNP 433187 433187 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C60%2C8%3BMQ%3D50%3BFQ%3D-56%3BPV4%3D0.09%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C29%2C0:55 scaffold54 SAMTools SNP 434532 434532 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 434593 434593 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 442104 442104 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C100%2C9%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 444686 444686 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C13%2C0%2C18%3BMQ%3D50%3BFQ%3D72%3BPV4%3D5.8e-10%2C1%2C1%2C1.7e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold54 SAMTools SNP 446213 446213 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.38%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 446265 446265 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold54 SAMTools SNP 446365 446365 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C81%2C0:99 scaffold54 SAMTools SNP 451445 451445 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 460930 460930 45.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold54 SAMTools SNP 461523 461523 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C71%2C4%2C36%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.24%2C3.8e-73%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold54 SAMTools SNP 463829 463829 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.58%3BPV4%3D1%2C0.0073%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C35:38 scaffold54 SAMTools SNP 465191 465191 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C17%2C17%2C1%3BMQ%3D45%3BFQ%3D68%3BPV4%3D0.18%2C1%2C8.6e-05%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold54 SAMTools SNP 465242 465242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C23%2C31%2C17%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C0.2%2C0.31%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 466590 466590 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D447%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C211%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 466758 466758 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C19%2C108%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 470648 470648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C297%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold54 SAMTools SNP 470705 470705 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold54 SAMTools SNP 471918 471918 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C11:14 scaffold54 SAMTools SNP 472361 472361 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.051%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C207:52 scaffold54 SAMTools SNP 474343 474343 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold54 SAMTools SNP 474867 474867 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold54 SAMTools SNP 475014 475014 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold54 SAMTools SNP 475052 475052 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C230:99 scaffold54 SAMTools SNP 475445 475445 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C15%2C2%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 478157 478157 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 478171 478171 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold54 SAMTools SNP 479315 479315 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold54 SAMTools SNP 481621 481621 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C122%2C65%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-05%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 482339 482339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C183%2C75%2C135%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 483710 483710 21.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold54 SAMTools SNP 483752 483752 93.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold54 SAMTools SNP 485941 485941 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C125%3BMQ%3D6%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C255%2C0:99 scaffold54 SAMTools SNP 488523 488523 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D7%2C3%2C16%2C1%3BMQ%3D22%3BFQ%3D-4.75%3BPV4%3D0.13%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C24:27 scaffold54 SAMTools SNP 577247 577247 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 613685 613685 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold54 SAMTools SNP 614589 614589 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.38%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold54 SAMTools SNP 615450 615450 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold54 SAMTools SNP 617425 617425 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.28%2C0.0085%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold54 SAMTools SNP 617483 617483 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold54 SAMTools SNP 618115 618115 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C49%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C151%2C0:99 scaffold54 SAMTools SNP 644624 644624 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 645576 645576 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 703883 703883 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold54 SAMTools SNP 703940 703940 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold54 SAMTools SNP 704232 704232 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold54 SAMTools SNP 704633 704633 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold54 SAMTools SNP 726580 726580 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold54 SAMTools SNP 728961 728961 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.18%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C85:88 scaffold54 SAMTools SNP 730761 730761 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold54 SAMTools SNP 731290 731290 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold54 SAMTools SNP 731300 731300 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold54 SAMTools SNP 731904 731904 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold54 SAMTools SNP 732113 732113 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold54 SAMTools SNP 732428 732428 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold54 SAMTools SNP 732449 732449 17.1 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold54 SAMTools SNP 733327 733327 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C241:99 scaffold54 SAMTools SNP 734055 734055 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold54 SAMTools SNP 747145 747145 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold54 SAMTools SNP 747183 747183 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C39:42 scaffold54 SAMTools SNP 748138 748138 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C39:42 scaffold54 SAMTools SNP 748938 748938 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold54 SAMTools SNP 751815 751815 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold54 SAMTools SNP 752378 752378 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold54 SAMTools SNP 753063 753063 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold54 SAMTools SNP 756726 756726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold54 SAMTools SNP 757191 757191 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold54 SAMTools SNP 757355 757355 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold54 SAMTools SNP 757395 757395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold54 SAMTools SNP 757434 757434 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 766199 766199 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold54 SAMTools SNP 766603 766603 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold54 SAMTools SNP 766630 766630 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold54 SAMTools SNP 766681 766681 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold54 SAMTools SNP 766903 766903 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold54 SAMTools SNP 824006 824006 3.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold540 SAMTools SNP 66297 66297 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 66359 66359 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 66417 66417 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 170678 170678 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold540 SAMTools SNP 176289 176289 148 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0%2C177%2C8%2C174:39 scaffold540 SAMTools SNP 178125 178125 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold540 SAMTools SNP 184379 184379 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold540 SAMTools SNP 184412 184412 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold540 SAMTools SNP 184749 184749 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold540 SAMTools SNP 188013 188013 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 220291 220291 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 220345 220345 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold540 SAMTools SNP 220381 220381 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold540 SAMTools SNP 220794 220794 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold540 SAMTools SNP 221140 221140 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold540 SAMTools SNP 221207 221207 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold540 SAMTools SNP 221208 221208 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 222156 222156 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 223027 223027 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold540 SAMTools SNP 223151 223151 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold540 SAMTools SNP 223740 223740 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold540 SAMTools SNP 226126 226126 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold541 SAMTools SNP 973 973 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold541 SAMTools SNP 1889 1889 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C54%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C181%2C0:99 scaffold541 SAMTools SNP 3116 3116 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold541 SAMTools SNP 19540 19540 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold541 SAMTools SNP 19864 19864 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold541 SAMTools SNP 23822 23822 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold541 SAMTools SNP 34307 34307 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold541 SAMTools SNP 39822 39822 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold541 SAMTools SNP 39867 39867 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold541 SAMTools SNP 75191 75191 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C110%2C12%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 75249 75249 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C26%2C79%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 77691 77691 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.46%2C0.2%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C236:99 scaffold541 SAMTools SNP 77709 77709 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold541 SAMTools SNP 77711 77711 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 103020 103020 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold541 SAMTools SNP 133729 133729 24.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold541 SAMTools SNP 133734 133734 17.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold541 SAMTools SNP 133806 133806 15.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold541 SAMTools SNP 133830 133830 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold541 SAMTools SNP 181064 181064 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold541 SAMTools SNP 192967 192967 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold541 SAMTools SNP 193110 193110 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C0.19%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold541 SAMTools SNP 193114 193114 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C0.13%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold541 SAMTools SNP 193551 193551 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.014%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold541 SAMTools SNP 193994 193994 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.29%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C79:30 scaffold541 SAMTools SNP 195964 195964 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D23.5%3BPV4%3D1%2C4.3e-12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C60:53 scaffold541 SAMTools SNP 195988 195988 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C33%2C0:63 scaffold541 SAMTools SNP 196031 196031 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold541 SAMTools SNP 196299 196299 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C9%3BMQ%3D49%3BFQ%3D176%3BPV4%3D0.0031%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold541 SAMTools SNP 196318 196318 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C8%3BMQ%3D49%3BFQ%3D165%3BPV4%3D0.004%2C1%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold541 SAMTools SNP 196480 196480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 196487 196487 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 197552 197552 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold541 SAMTools SNP 197721 197721 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold541 SAMTools SNP 197748 197748 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold541 SAMTools SNP 197817 197817 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold541 SAMTools SNP 239024 239024 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold541 SAMTools SNP 239054 239054 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold541 SAMTools SNP 239079 239079 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold541 SAMTools SNP 239875 239875 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold541 SAMTools SNP 243682 243682 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold541 SAMTools SNP 243767 243767 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C144%2C0:99 scaffold541 SAMTools SNP 243777 243777 57 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold541 SAMTools SNP 247191 247191 76 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold541 SAMTools SNP 247257 247257 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold541 SAMTools SNP 247268 247268 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold541 SAMTools SNP 255715 255715 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold541 SAMTools SNP 258071 258071 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C4%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C166%2C0:99 scaffold541 SAMTools SNP 258100 258100 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C9%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C2.8e-16%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C160:99 scaffold541 SAMTools SNP 258158 258158 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C51%2C15%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D2e-05%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold541 SAMTools SNP 260169 260169 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C1%2C64%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 260191 260191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C170%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 260217 260217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C48%2C28%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 260809 260809 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C61%2C5%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 260840 260840 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C8%2C62%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.054%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold541 SAMTools SNP 261767 261767 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold541 SAMTools SNP 268776 268776 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 268803 268803 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 269373 269373 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 269390 269390 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 277308 277308 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold541 SAMTools SNP 277338 277338 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C128:85 scaffold541 SAMTools SNP 277897 277897 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold541 SAMTools SNP 277922 277922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold541 SAMTools SNP 277934 277934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 279928 279928 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold541 SAMTools SNP 280009 280009 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 284502 284502 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold541 SAMTools SNP 284531 284531 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold541 SAMTools SNP 285237 285237 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D0.33%2C1%2C0.21%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C80:44 scaffold541 SAMTools SNP 289185 289185 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold541 SAMTools SNP 289735 289735 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold541 SAMTools SNP 289759 289759 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold541 SAMTools SNP 290723 290723 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C232:28 scaffold541 SAMTools SNP 293667 293667 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold541 SAMTools SNP 293902 293902 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold541 SAMTools SNP 293920 293920 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold541 SAMTools SNP 296951 296951 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold541 SAMTools SNP 297198 297198 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold541 SAMTools SNP 297219 297219 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold541 SAMTools SNP 301230 301230 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold541 SAMTools SNP 301765 301765 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C48%3BMQ%3D8%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C255%2C0:99 scaffold541 SAMTools SNP 301806 301806 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C73%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 302345 302345 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C5.5e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C134:34 scaffold541 SAMTools SNP 302352 302352 35.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold541 SAMTools SNP 302434 302434 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold541 SAMTools SNP 318529 318529 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold541 SAMTools SNP 318543 318543 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold541 SAMTools SNP 319309 319309 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C2%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold541 SAMTools SNP 319370 319370 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C6%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 319379 319379 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C1%2C3%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.12%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold541 SAMTools SNP 319382 319382 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C5%2C3%3BMQ%3D49%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold541 SAMTools SNP 319394 319394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C6%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 319517 319517 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C2%2C8%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold541 SAMTools SNP 319518 319518 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.56%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold541 SAMTools SNP 319913 319913 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C6%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.27%2C1%2C0.3%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 319921 319921 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold541 SAMTools SNP 322177 322177 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C15%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.27%2C2.7e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C185:99 scaffold541 SAMTools SNP 322225 322225 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C33%2C0:63 scaffold541 SAMTools SNP 322601 322601 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D-218%3BPV4%3D1%2C0.45%2C0.46%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C191%2C0:99 scaffold541 SAMTools SNP 322617 322617 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C15%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold541 SAMTools SNP 323234 323234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C38%2C114%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.57%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 323324 323324 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C10%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 323327 323327 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C14%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold541 SAMTools SNP 323961 323961 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold541 SAMTools SNP 324035 324035 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C33%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 324050 324050 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C38%2C0%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold541 SAMTools SNP 324149 324149 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C19%2C33%2C0%3BMQ%3D48%3BFQ%3D153%3BPV4%3D0.0015%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold541 SAMTools SNP 324621 324621 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C11%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 325599 325599 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C21%2C77%3BMQ%3D49%3BFQ%3D96%3BPV4%3D1.4e-12%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold541 SAMTools SNP 325623 325623 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C21%2C65%3BMQ%3D50%3BFQ%3D120%3BPV4%3D2.3e-11%2C1%2C1%2C4.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold541 SAMTools SNP 325644 325644 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C7%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.07%2C0.00095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold541 SAMTools SNP 325650 325650 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C30%2C0:57 scaffold541 SAMTools SNP 381029 381029 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold541 SAMTools SNP 381054 381054 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold541 SAMTools SNP 381089 381089 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold541 SAMTools SNP 381528 381528 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold541 SAMTools SNP 381559 381559 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold541 SAMTools SNP 383690 383690 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold541 SAMTools SNP 384003 384003 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.28%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold541 SAMTools SNP 384025 384025 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold541 SAMTools SNP 388145 388145 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold541 SAMTools SNP 388177 388177 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.00053%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C197:99 scaffold541 SAMTools SNP 393681 393681 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 394120 394120 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 394132 394132 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold541 SAMTools SNP 458699 458699 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold541 SAMTools SNP 477332 477332 20.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold541 SAMTools SNP 477417 477417 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C39%2C0:65 scaffold541 SAMTools SNP 483234 483234 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.052%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C66:69 scaffold541 SAMTools SNP 483254 483254 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold541 SAMTools SNP 483428 483428 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold541 SAMTools SNP 526487 526487 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D756%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 526613 526613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1264%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C452%2C236%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 529517 529517 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D733%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D300%2C76%2C277%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 530885 530885 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D845%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C479%2C314%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 530930 530930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D925%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C293%2C623%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold541 SAMTools SNP 530971 530971 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold541 SAMTools SNP 534400 534400 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold541 SAMTools SNP 538384 538384 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.32%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C238:99 scaffold541 SAMTools SNP 539657 539657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 540824 540824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C5%2C93%2C2%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.71%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 540911 540911 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C98%2C14%2C28%3BMQ%3D37%3BFQ%3D70%3BPV4%3D0.17%2C1%2C0.11%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold541 SAMTools SNP 543812 543812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C15%2C36%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.81%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 543876 543876 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C3%2C6%3BMQ%3D35%3BFQ%3D98%3BPV4%3D0.27%2C0.029%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C200:99 scaffold541 SAMTools SNP 543880 543880 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D34%3BFQ%3D-50%3BPV4%3D0.36%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C23%2C0:43 scaffold541 SAMTools SNP 552897 552897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C118%2C97%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 552930 552930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C51%2C14%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-05%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 554493 554493 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C1%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.25%2C0.4%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold541 SAMTools SNP 555526 555526 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C6.3e-23%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold541 SAMTools SNP 558793 558793 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D39.3%3BPV4%3D1%2C6.8e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C71:69 scaffold541 SAMTools SNP 562400 562400 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold541 SAMTools SNP 565974 565974 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold541 SAMTools SNP 566170 566170 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold541 SAMTools SNP 566172 566172 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C125:80 scaffold541 SAMTools SNP 566949 566949 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold541 SAMTools SNP 566970 566970 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold541 SAMTools SNP 567820 567820 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold541 SAMTools SNP 570313 570313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold541 SAMTools SNP 576985 576985 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.58%2C0.23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold541 SAMTools SNP 576986 576986 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.58%2C0.087%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold541 SAMTools SNP 581080 581080 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C7%2C4%3BMQ%3D46%3BFQ%3D180%3BPV4%3D0.26%2C0.12%2C0.053%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold541 SAMTools SNP 582404 582404 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold541 SAMTools SNP 587395 587395 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold541 SAMTools SNP 590359 590359 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold541 SAMTools SNP 590371 590371 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold541 SAMTools SNP 590389 590389 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.45%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold541 SAMTools SNP 591592 591592 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C3%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.081%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold541 SAMTools SNP 591814 591814 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold541 SAMTools SNP 699447 699447 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C0.069%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C178:99 scaffold541 SAMTools SNP 699597 699597 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C245:99 scaffold541 SAMTools SNP 699660 699660 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.27%2C5.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C224:74 scaffold541 SAMTools SNP 700222 700222 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold541 SAMTools SNP 700288 700288 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold541 SAMTools SNP 700344 700344 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C116:99 scaffold541 SAMTools SNP 700359 700359 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C113:99 scaffold541 SAMTools SNP 700655 700655 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold541 SAMTools SNP 700657 700657 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold541 SAMTools SNP 700819 700819 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C71:74 scaffold541 SAMTools SNP 701465 701465 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C52%2C11%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold541 SAMTools SNP 701474 701474 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C42%2C0%2C38%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1.9e-05%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold541 SAMTools SNP 701543 701543 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0024%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C32:35 scaffold541 SAMTools SNP 701552 701552 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold541 SAMTools SNP 702627 702627 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold541 SAMTools SNP 708939 708939 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold541 SAMTools SNP 720143 720143 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold541 SAMTools SNP 720189 720189 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 619 619 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 6056 6056 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 6092 6092 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 6704 6704 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold542 SAMTools SNP 6719 6719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold542 SAMTools SNP 7232 7232 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.00029%2C9.7e-23%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold542 SAMTools SNP 7785 7785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold542 SAMTools SNP 9295 9295 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.064%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 9612 9612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C8%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold542 SAMTools SNP 9924 9924 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 9954 9954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold542 SAMTools SNP 10642 10642 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold542 SAMTools SNP 13306 13306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 14089 14089 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 14117 14117 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.12%2C0.01%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold542 SAMTools SNP 14171 14171 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.2e-20%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C211:62 scaffold542 SAMTools SNP 14764 14764 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 14767 14767 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 15414 15414 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.039%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold542 SAMTools SNP 16230 16230 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold542 SAMTools SNP 16233 16233 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold542 SAMTools SNP 16236 16236 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.01%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold542 SAMTools SNP 16360 16360 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.42%3BPV4%3D1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C35:38 scaffold542 SAMTools SNP 16397 16397 17.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold542 SAMTools SNP 16552 16552 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.062%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold542 SAMTools SNP 16565 16565 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D45.7%3BPV4%3D0.4%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C85:76 scaffold542 SAMTools SNP 16574 16574 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 16604 16604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.12%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold542 SAMTools SNP 16967 16967 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C5%2C0%3BMQ%3D49%3BFQ%3D97%3BPV4%3D0.54%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold542 SAMTools SNP 16970 16970 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C5%2C0%3BMQ%3D49%3BFQ%3D102%3BPV4%3D1%2C0.48%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold542 SAMTools SNP 17512 17512 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.032%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold542 SAMTools SNP 17539 17539 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold542 SAMTools SNP 18077 18077 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold542 SAMTools SNP 26455 26455 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold542 SAMTools SNP 26457 26457 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 26684 26684 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C139:62 scaffold542 SAMTools SNP 26687 26687 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C124:62 scaffold542 SAMTools SNP 27639 27639 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold542 SAMTools SNP 41685 41685 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold542 SAMTools SNP 47790 47790 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold542 SAMTools SNP 47796 47796 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold542 SAMTools SNP 47826 47826 52.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold542 SAMTools SNP 47853 47853 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold542 SAMTools SNP 48760 48760 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold542 SAMTools SNP 48943 48943 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold542 SAMTools SNP 49172 49172 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.32%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold542 SAMTools SNP 49634 49634 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 49646 49646 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 49802 49802 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold542 SAMTools SNP 50232 50232 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold542 SAMTools SNP 50238 50238 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold542 SAMTools SNP 50418 50418 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C21%2C0:39 scaffold542 SAMTools SNP 50436 50436 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold542 SAMTools SNP 50888 50888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 50929 50929 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 50936 50936 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold542 SAMTools SNP 51443 51443 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 51447 51447 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold542 SAMTools SNP 51518 51518 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold542 SAMTools SNP 51528 51528 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold542 SAMTools SNP 51763 51763 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 52107 52107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 52612 52612 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 53236 53236 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold542 SAMTools SNP 53260 53260 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold542 SAMTools SNP 53275 53275 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold542 SAMTools SNP 54525 54525 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C48:51 scaffold542 SAMTools SNP 54766 54766 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold542 SAMTools SNP 54793 54793 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.011%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C250:99 scaffold542 SAMTools SNP 54829 54829 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C18%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 61076 61076 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold542 SAMTools SNP 64242 64242 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.26%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold542 SAMTools SNP 64462 64462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold542 SAMTools SNP 65444 65444 107 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C115%2C237%2C0%2C228:33 scaffold542 SAMTools SNP 66109 66109 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold542 SAMTools SNP 66115 66115 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold542 SAMTools SNP 68657 68657 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C13%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.41%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C111:99 scaffold542 SAMTools SNP 68848 68848 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold542 SAMTools SNP 68854 68854 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 69138 69138 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 69673 69673 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold542 SAMTools SNP 70086 70086 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold542 SAMTools SNP 70576 70576 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold542 SAMTools SNP 71068 71068 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 78593 78593 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold542 SAMTools SNP 79027 79027 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.091%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold542 SAMTools SNP 80093 80093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D502%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C228%2C171%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold542 SAMTools SNP 82823 82823 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C137%2C130%2C113%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 83284 83284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C59%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold542 SAMTools SNP 86336 86336 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C165%2C72%2C151%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C4.3e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 86372 86372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C113%2C58%2C46%3BMQ%3D46%3BFQ%3D225%3BPV4%3D2.2e-05%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 88300 88300 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C55%2C34%2C43%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 88315 88315 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C66%2C45%2C66%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.43%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 110104 110104 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 110932 110932 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold542 SAMTools SNP 111361 111361 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold542 SAMTools SNP 111727 111727 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold542 SAMTools SNP 111784 111784 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.23%2C0.23%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold542 SAMTools SNP 112297 112297 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.5%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold542 SAMTools SNP 113395 113395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold542 SAMTools SNP 113421 113421 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold542 SAMTools SNP 114087 114087 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C0.15%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C193:99 scaffold542 SAMTools SNP 114130 114130 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C204:99 scaffold542 SAMTools SNP 114591 114591 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold542 SAMTools SNP 114674 114674 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 114957 114957 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold542 SAMTools SNP 114983 114983 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.02%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold542 SAMTools SNP 114987 114987 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0020%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C209:60 scaffold542 SAMTools SNP 115216 115216 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold542 SAMTools SNP 116638 116638 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold542 SAMTools SNP 119502 119502 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold542 SAMTools SNP 119574 119574 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00032%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold542 SAMTools SNP 120499 120499 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 120503 120503 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 123755 123755 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 123772 123772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 142573 142573 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 142767 142767 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold542 SAMTools SNP 142866 142866 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold542 SAMTools SNP 143966 143966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 144021 144021 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold542 SAMTools SNP 145555 145555 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold542 SAMTools SNP 146051 146051 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold542 SAMTools SNP 146100 146100 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold542 SAMTools SNP 146177 146177 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold542 SAMTools SNP 149671 149671 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 149877 149877 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold542 SAMTools SNP 150234 150234 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold542 SAMTools SNP 151221 151221 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 151798 151798 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold542 SAMTools SNP 152608 152608 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 152805 152805 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 153040 153040 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 156747 156747 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 157803 157803 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold542 SAMTools SNP 157830 157830 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 173712 173712 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold542 SAMTools SNP 177774 177774 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold542 SAMTools SNP 179183 179183 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 182544 182544 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold542 SAMTools SNP 183805 183805 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold542 SAMTools SNP 183808 183808 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold542 SAMTools SNP 184288 184288 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold542 SAMTools SNP 184294 184294 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold542 SAMTools SNP 191798 191798 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold542 SAMTools SNP 191803 191803 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold542 SAMTools SNP 192249 192249 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold542 SAMTools SNP 192297 192297 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D0.4%2C0.13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C77:62 scaffold542 SAMTools SNP 192303 192303 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold542 SAMTools SNP 192392 192392 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold542 SAMTools SNP 192904 192904 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold542 SAMTools SNP 273144 273144 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3241%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1875%2C500%2C345%2C443%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.7e-73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold542 SAMTools SNP 273267 273267 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3804%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C500%2C2%2C984%3BMQ%3D40%3BFQ%3D182%3BPV4%3D0.19%2C0.014%2C7.2e-108%2C2.7e-268;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C227:99 scaffold542 SAMTools SNP 273310 273310 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3537%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C2212%3BMQ%3D26%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.00014%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold542 SAMTools SNP 274567 274567 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D698%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C694%3BMQ%3D11%3BFQ%3D-282%3BPV4%3D1%2C1%2C4.1e-06%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold542 SAMTools SNP 274617 274617 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold542 SAMTools SNP 274958 274958 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 278507 278507 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold542 SAMTools SNP 278520 278520 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold542 SAMTools SNP 284087 284087 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold542 SAMTools SNP 284597 284597 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.37%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold542 SAMTools SNP 284613 284613 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold542 SAMTools SNP 285070 285070 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.33%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C184:73 scaffold542 SAMTools SNP 290443 290443 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C9%3BMQ%3D46%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C185:99 scaffold542 SAMTools SNP 388561 388561 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C45%2C16%2C54%3BMQ%3D30%3BFQ%3D34%3BPV4%3D0.84%2C2.6e-74%2C0.0062%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold542 SAMTools SNP 405449 405449 14.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold544 SAMTools SNP 1967 1967 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold544 SAMTools SNP 1979 1979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold544 SAMTools SNP 6722 6722 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold544 SAMTools SNP 6740 6740 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C10%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold544 SAMTools SNP 7523 7523 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.017%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C222:99 scaffold544 SAMTools SNP 7568 7568 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold544 SAMTools SNP 7573 7573 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold544 SAMTools SNP 7749 7749 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold544 SAMTools SNP 7799 7799 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold544 SAMTools SNP 8087 8087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold544 SAMTools SNP 10399 10399 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 10457 10457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold544 SAMTools SNP 10664 10664 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold544 SAMTools SNP 10718 10718 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold544 SAMTools SNP 11012 11012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold544 SAMTools SNP 11048 11048 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold544 SAMTools SNP 11534 11534 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.14%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold544 SAMTools SNP 13049 13049 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold544 SAMTools SNP 13159 13159 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 15442 15442 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D30%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C33%2C0:57 scaffold544 SAMTools SNP 16261 16261 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C21%2C4%3BMQ%3D47%3BFQ%3D175%3BPV4%3D0.64%2C1%2C0.24%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C202:99 scaffold544 SAMTools SNP 16288 16288 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C10%2C16%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.53%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 16712 16712 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C5%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.00083%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold544 SAMTools SNP 16727 16727 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.00029%2C0.13%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold544 SAMTools SNP 16894 16894 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D24%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C39%2C0:46 scaffold544 SAMTools SNP 20130 20130 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold544 SAMTools SNP 20191 20191 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C31%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C111%2C0:99 scaffold544 SAMTools SNP 20729 20729 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C1%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C144%2C0:99 scaffold544 SAMTools SNP 21337 21337 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold544 SAMTools SNP 21349 21349 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C24%2C0:45 scaffold544 SAMTools SNP 23685 23685 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold544 SAMTools SNP 26798 26798 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.061%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 27517 27517 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold544 SAMTools SNP 27532 27532 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.29%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold544 SAMTools SNP 27562 27562 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold544 SAMTools SNP 27997 27997 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold544 SAMTools SNP 28033 28033 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold544 SAMTools SNP 28655 28655 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold544 SAMTools SNP 29045 29045 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold544 SAMTools SNP 30609 30609 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C33%2C0:63 scaffold544 SAMTools SNP 32632 32632 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold544 SAMTools SNP 33457 33457 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold544 SAMTools SNP 33475 33475 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 33481 33481 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 33505 33505 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold544 SAMTools SNP 37158 37158 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 38782 38782 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold544 SAMTools SNP 50378 50378 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 50399 50399 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold544 SAMTools SNP 52283 52283 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold544 SAMTools SNP 58947 58947 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold544 SAMTools SNP 59341 59341 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold544 SAMTools SNP 59614 59614 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.00045%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C104:88 scaffold544 SAMTools SNP 59910 59910 42.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold544 SAMTools SNP 59992 59992 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.0064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C151:39 scaffold544 SAMTools SNP 66027 66027 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold544 SAMTools SNP 66039 66039 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.23%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C188:95 scaffold544 SAMTools SNP 69959 69959 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C9%2C5%3BMQ%3D29%3BFQ%3D56%3BPV4%3D0.74%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold544 SAMTools SNP 70374 70374 126 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C30%2C0%2C148%2C9%2C145:57 scaffold544 SAMTools SNP 70437 70437 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C10%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1.4e-43%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold544 SAMTools SNP 70530 70530 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold544 SAMTools SNP 72050 72050 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.053%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold544 SAMTools SNP 72051 72051 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.013%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold544 SAMTools SNP 72587 72587 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold544 SAMTools SNP 72640 72640 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold544 SAMTools SNP 73108 73108 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.014%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold544 SAMTools SNP 73144 73144 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold544 SAMTools SNP 73145 73145 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.29%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold544 SAMTools SNP 73695 73695 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold544 SAMTools SNP 82570 82570 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 108713 108713 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 108812 108812 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.022%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold544 SAMTools SNP 109426 109426 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 109458 109458 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 109751 109751 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 109757 109757 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 112442 112442 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 114149 114149 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold544 SAMTools SNP 114278 114278 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold544 SAMTools SNP 114526 114526 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold544 SAMTools SNP 114635 114635 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold544 SAMTools SNP 114818 114818 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold544 SAMTools SNP 115991 115991 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 116089 116089 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 118196 118196 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 146156 146156 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold544 SAMTools SNP 147318 147318 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold544 SAMTools SNP 147329 147329 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 151076 151076 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold544 SAMTools SNP 151082 151082 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold544 SAMTools SNP 151132 151132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold544 SAMTools SNP 152368 152368 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold544 SAMTools SNP 154075 154075 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D122%2C5%2C53%2C1%3BMQ%3D43%3BFQ%3D62%3BPV4%3D0.67%2C9e-12%2C5.3e-44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold544 SAMTools SNP 154587 154587 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 163546 163546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold544 SAMTools SNP 166137 166137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold544 SAMTools SNP 168719 168719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold544 SAMTools SNP 185907 185907 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C2%2C0:5 scaffold544 SAMTools SNP 208539 208539 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C20%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold544 SAMTools SNP 210724 210724 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold544 SAMTools SNP 210827 210827 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold544 SAMTools SNP 212509 212509 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 215213 215213 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold544 SAMTools SNP 215215 215215 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold544 SAMTools SNP 229722 229722 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C21%2C0:33 scaffold544 SAMTools SNP 233175 233175 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C66:34 scaffold544 SAMTools SNP 235961 235961 23 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold544 SAMTools SNP 243266 243266 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold544 SAMTools SNP 243775 243775 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C25%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C250:99 scaffold544 SAMTools SNP 246382 246382 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 290636 290636 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C30%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 290669 290669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 292901 292901 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C79%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold544 SAMTools SNP 292934 292934 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 292998 292998 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold544 SAMTools SNP 292999 292999 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold544 SAMTools SNP 293345 293345 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C10%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold544 SAMTools SNP 294008 294008 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 294770 294770 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 296404 296404 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 299348 299348 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 299417 299417 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 299956 299956 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold544 SAMTools SNP 300678 300678 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold544 SAMTools SNP 301006 301006 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C30%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.011%2C9.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold544 SAMTools SNP 301088 301088 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C28%2C2%2C26%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0028%2C2.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold544 SAMTools SNP 301658 301658 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold544 SAMTools SNP 303209 303209 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D30%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C42%2C0:81 scaffold544 SAMTools SNP 305585 305585 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C40%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 305906 305906 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C13%2C35%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.062%2C0.21%2C1%2C9.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold544 SAMTools SNP 306385 306385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C62%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00022%2C0.00016%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 306831 306831 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 308153 308153 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C24%2C9%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.1%2C0.39%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold544 SAMTools SNP 308156 308156 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C24%2C9%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold544 SAMTools SNP 309165 309165 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold544 SAMTools SNP 309178 309178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C8%2C55%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 309618 309618 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C60%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1.6e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 309916 309916 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C29%2C1%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-20%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 309949 309949 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold544 SAMTools SNP 309985 309985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.26%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 310036 310036 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C48%2C10%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.011%2C5.7e-25%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold544 SAMTools SNP 312098 312098 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C31%2C28%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 312125 312125 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C26%2C28%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.32%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold544 SAMTools SNP 312355 312355 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C38%2C1%2C16%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold544 SAMTools SNP 312358 312358 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C44%2C1%2C21%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold544 SAMTools SNP 312391 312391 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C3%2C89%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.6%2C0.0087%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold544 SAMTools SNP 312951 312951 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold544 SAMTools SNP 313031 313031 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C8%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 313346 313346 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C4%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 315207 315207 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold544 SAMTools SNP 315559 315559 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold544 SAMTools SNP 315577 315577 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold544 SAMTools SNP 315580 315580 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold544 SAMTools SNP 318501 318501 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0058%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold544 SAMTools SNP 318867 318867 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C229:79 scaffold544 SAMTools SNP 319887 319887 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold544 SAMTools SNP 335443 335443 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold544 SAMTools SNP 335449 335449 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C11:14 scaffold544 SAMTools SNP 335821 335821 48.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold544 SAMTools SNP 364726 364726 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 364973 364973 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 365108 365108 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 365282 365282 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 366358 366358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 366962 366962 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold544 SAMTools SNP 367087 367087 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold544 SAMTools SNP 367097 367097 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold544 SAMTools SNP 367420 367420 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C27%2C0:51 scaffold544 SAMTools SNP 367427 367427 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 367484 367484 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C111:99 scaffold544 SAMTools SNP 367657 367657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold544 SAMTools SNP 368521 368521 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold544 SAMTools SNP 368538 368538 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 369033 369033 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold544 SAMTools SNP 369072 369072 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C4%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.3%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C247:99 scaffold544 SAMTools SNP 369096 369096 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.09%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C218:99 scaffold544 SAMTools SNP 369330 369330 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 369348 369348 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 369630 369630 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold544 SAMTools SNP 369710 369710 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold544 SAMTools SNP 370066 370066 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold544 SAMTools SNP 372266 372266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.025%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold544 SAMTools SNP 372284 372284 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C12%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold544 SAMTools SNP 372605 372605 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C60%2C0:99 scaffold544 SAMTools SNP 372909 372909 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold544 SAMTools SNP 372912 372912 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold544 SAMTools SNP 372930 372930 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D89.3%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C121:99 scaffold544 SAMTools SNP 372958 372958 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.027%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C201:77 scaffold544 SAMTools SNP 372978 372978 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C27%2C0:51 scaffold544 SAMTools SNP 373229 373229 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold544 SAMTools SNP 373768 373768 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C242:99 scaffold544 SAMTools SNP 373814 373814 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C18%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold544 SAMTools SNP 375425 375425 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold544 SAMTools SNP 375696 375696 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold544 SAMTools SNP 375704 375704 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold544 SAMTools SNP 376231 376231 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 376233 376233 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 376583 376583 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold544 SAMTools SNP 376622 376622 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C4.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold544 SAMTools SNP 376687 376687 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C1%2C14%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.32%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold544 SAMTools SNP 376691 376691 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold544 SAMTools SNP 377144 377144 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C12%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.49%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold544 SAMTools SNP 377165 377165 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold544 SAMTools SNP 378420 378420 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold544 SAMTools SNP 378462 378462 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold544 SAMTools SNP 379352 379352 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0055%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold544 SAMTools SNP 379358 379358 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold544 SAMTools SNP 379421 379421 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C6%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0022%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold544 SAMTools SNP 379657 379657 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.05%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold544 SAMTools SNP 379678 379678 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.084%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold544 SAMTools SNP 379971 379971 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold544 SAMTools SNP 380200 380200 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold544 SAMTools SNP 380212 380212 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.09%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 381680 381680 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 394756 394756 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C15%2C239%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 396722 396722 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C21%2C7%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0028%2C0.00038%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold544 SAMTools SNP 396746 396746 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C58%2C10%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 397976 397976 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C13%2C133%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.38%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 408762 408762 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 408859 408859 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 412290 412290 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold544 SAMTools SNP 416856 416856 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C14%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C229%2C0:99 scaffold544 SAMTools SNP 417608 417608 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C18%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C3.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold544 SAMTools SNP 417652 417652 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold544 SAMTools SNP 419023 419023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold544 SAMTools SNP 420138 420138 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 420165 420165 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C5%2C63%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 421141 421141 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C8.3e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold544 SAMTools SNP 423247 423247 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold544 SAMTools SNP 424232 424232 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C8%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.34%2C6.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold544 SAMTools SNP 424610 424610 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.045%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold544 SAMTools SNP 424628 424628 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold544 SAMTools SNP 425106 425106 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold544 SAMTools SNP 425121 425121 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold544 SAMTools SNP 425358 425358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold544 SAMTools SNP 425589 425589 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C22%2C70%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 425962 425962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C4%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 426094 426094 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.23%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold544 SAMTools SNP 426121 426121 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 427587 427587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C30%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold544 SAMTools SNP 427900 427900 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C27%2C0:51 scaffold544 SAMTools SNP 428708 428708 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C45%2C0:81 scaffold544 SAMTools SNP 429071 429071 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C25%2C9%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D3.3e-05%2C6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold544 SAMTools SNP 429116 429116 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C39%2C0:75 scaffold544 SAMTools SNP 430189 430189 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C16%3BMQ%3D50%3BFQ%3D38.2%3BPV4%3D1%2C2.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C73:68 scaffold544 SAMTools SNP 438032 438032 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold544 SAMTools SNP 438068 438068 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold544 SAMTools SNP 438164 438164 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.2%2C2.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold544 SAMTools SNP 438190 438190 47.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C9:12 scaffold544 SAMTools SNP 438246 438246 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C75%2C0:99 scaffold544 SAMTools SNP 438628 438628 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C0.41%2C0.25%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C77:78 scaffold544 SAMTools SNP 439306 439306 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D79.9%3BPV4%3D1%2C0.22%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C124:99 scaffold544 SAMTools SNP 440504 440504 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C7%2C13%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.37%2C0.16%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold544 SAMTools SNP 445577 445577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold544 SAMTools SNP 447700 447700 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 450415 450415 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 453119 453119 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C25%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0011%2C6.2e-10%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold544 SAMTools SNP 453811 453811 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold544 SAMTools SNP 456071 456071 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold544 SAMTools SNP 457615 457615 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 460913 460913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 461082 461082 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C10%2C11%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.77%2C1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold544 SAMTools SNP 461810 461810 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C120%2C0:99 scaffold544 SAMTools SNP 462950 462950 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C8%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.41%2C2.1e-14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold544 SAMTools SNP 463161 463161 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.3%2C1.7e-28%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold544 SAMTools SNP 463199 463199 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C87%2C0:99 scaffold544 SAMTools SNP 463233 463233 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C15%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C4.6e-26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C229:74 scaffold544 SAMTools SNP 463372 463372 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold544 SAMTools SNP 463712 463712 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.055%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C215:28 scaffold544 SAMTools SNP 469222 469222 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold544 SAMTools SNP 469500 469500 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 469673 469673 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C88:40 scaffold544 SAMTools SNP 469676 469676 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C112:49 scaffold544 SAMTools SNP 469838 469838 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold544 SAMTools SNP 470143 470143 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 470260 470260 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold544 SAMTools SNP 471389 471389 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 471649 471649 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold544 SAMTools SNP 471663 471663 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold544 SAMTools SNP 482935 482935 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 485927 485927 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold544 SAMTools SNP 491449 491449 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C33%2C105%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold544 SAMTools SNP 492557 492557 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C44%2C3%2C15%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.098%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold544 SAMTools SNP 492622 492622 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C24%2C34%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 493084 493084 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C62%2C4%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 493086 493086 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C77%2C0%2C37%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.01%2C1.6e-18%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold544 SAMTools SNP 498482 498482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold544 SAMTools SNP 498484 498484 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold544 SAMTools SNP 498579 498579 29 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C120%2C0%2C39%2C81%2C36:99 scaffold544 SAMTools SNP 502008 502008 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold544 SAMTools SNP 503558 503558 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 503582 503582 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.29%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C144:53 scaffold544 SAMTools SNP 504321 504321 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold544 SAMTools SNP 505343 505343 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold544 SAMTools SNP 505404 505404 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 506092 506092 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold544 SAMTools SNP 506364 506364 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold544 SAMTools SNP 507093 507093 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D1%2C0.004%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C38:41 scaffold544 SAMTools SNP 507196 507196 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold544 SAMTools SNP 507199 507199 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold544 SAMTools SNP 507889 507889 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.1e-16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C174:83 scaffold544 SAMTools SNP 508757 508757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C6.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 508779 508779 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C36%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold544 SAMTools SNP 509245 509245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C19%2C12%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.2%2C0.19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 509272 509272 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C5%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 509454 509454 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C12%3BMQ%3D49%3BFQ%3D126%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold544 SAMTools SNP 509457 509457 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C12%3BMQ%3D49%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold544 SAMTools SNP 509500 509500 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold544 SAMTools SNP 509508 509508 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 510203 510203 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 510215 510215 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold544 SAMTools SNP 510296 510296 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold544 SAMTools SNP 510345 510345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold544 SAMTools SNP 512106 512106 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold544 SAMTools SNP 512175 512175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold544 SAMTools SNP 516740 516740 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C0.18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold544 SAMTools SNP 516808 516808 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold544 SAMTools SNP 521562 521562 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold544 SAMTools SNP 537448 537448 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold544 SAMTools SNP 537786 537786 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 537944 537944 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 540086 540086 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 541312 541312 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C69:31 scaffold544 SAMTools SNP 541628 541628 222 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C239%2C10%2C235:99 scaffold544 SAMTools SNP 541871 541871 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 542020 542020 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 543885 543885 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold544 SAMTools SNP 548171 548171 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold544 SAMTools SNP 548291 548291 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 548510 548510 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold544 SAMTools SNP 548565 548565 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 548888 548888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 554478 554478 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold544 SAMTools SNP 557603 557603 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 557610 557610 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 557633 557633 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 557703 557703 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold544 SAMTools SNP 558053 558053 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 558114 558114 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 558224 558224 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 558393 558393 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 558434 558434 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold544 SAMTools SNP 559190 559190 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold544 SAMTools SNP 559400 559400 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C66%2C0:99 scaffold544 SAMTools SNP 570870 570870 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C12%2C19%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.12%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold544 SAMTools SNP 573891 573891 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C27:30 scaffold544 SAMTools SNP 573926 573926 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 573946 573946 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 628048 628048 103 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C42%2C0:81 scaffold544 SAMTools SNP 628178 628178 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.6%2C2.1e-16%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold544 SAMTools SNP 628308 628308 89.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C18%2C0:33 scaffold544 SAMTools SNP 628798 628798 153 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C114%2C0:99 scaffold544 SAMTools SNP 628948 628948 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold544 SAMTools SNP 632506 632506 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C48%2C0:93 scaffold544 SAMTools SNP 632571 632571 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold544 SAMTools SNP 639155 639155 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 639168 639168 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C79:79 scaffold544 SAMTools SNP 639255 639255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold544 SAMTools SNP 639651 639651 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold544 SAMTools SNP 639724 639724 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.37%2C0.18%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C148:41 scaffold544 SAMTools SNP 640040 640040 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.44%2C7.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C193:99 scaffold544 SAMTools SNP 640814 640814 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 641919 641919 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold544 SAMTools SNP 645841 645841 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold544 SAMTools SNP 645883 645883 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold544 SAMTools SNP 646063 646063 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold544 SAMTools SNP 646407 646407 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 651476 651476 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold544 SAMTools SNP 651905 651905 46.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold544 SAMTools SNP 651965 651965 17.1 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold544 SAMTools SNP 652004 652004 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D48%3BFQ%3D47%3BPV4%3D0.015%2C2.4e-06%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C200:77 scaffold544 SAMTools SNP 652361 652361 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold544 SAMTools SNP 653798 653798 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.029%2C8.2e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C107:34 scaffold544 SAMTools SNP 654731 654731 4.12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D3%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C54%2C0:39 scaffold544 SAMTools SNP 655527 655527 7.07 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C2%2C9%2C1%3BMQ%3D12%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C5%2C0:6 scaffold544 SAMTools SNP 655692 655692 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C6%2C13%2C4%3BMQ%3D32%3BFQ%3D-41%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C14%2C0:25 scaffold544 SAMTools SNP 657132 657132 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold544 SAMTools SNP 657665 657665 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 658483 658483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 673003 673003 35.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold544 SAMTools SNP 710261 710261 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C234:66 scaffold544 SAMTools SNP 710633 710633 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold544 SAMTools SNP 710695 710695 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0014%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold544 SAMTools SNP 710915 710915 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C9%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.69%2C2.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold544 SAMTools SNP 710980 710980 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C1%2C15%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.012%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold544 SAMTools SNP 711948 711948 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.093%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold544 SAMTools SNP 711981 711981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold544 SAMTools SNP 712038 712038 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold544 SAMTools SNP 712065 712065 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold544 SAMTools SNP 712509 712509 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C142:31 scaffold544 SAMTools SNP 712909 712909 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold544 SAMTools SNP 713189 713189 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold544 SAMTools SNP 713215 713215 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.13%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold544 SAMTools SNP 713748 713748 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold544 SAMTools SNP 713844 713844 213 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C9%2C248%2C0%2C245:39 scaffold544 SAMTools SNP 714431 714431 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 734118 734118 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold544 SAMTools SNP 734138 734138 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.36%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C29:32 scaffold544 SAMTools SNP 735673 735673 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 737098 737098 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 737262 737262 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 738276 738276 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C22%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D4.5e-11%2C1%2C1%2C3.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C226:99 scaffold544 SAMTools SNP 743494 743494 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold544 SAMTools SNP 743520 743520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold544 SAMTools SNP 752083 752083 63.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold544 SAMTools SNP 752140 752140 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D25%3BFQ%3D8%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C39:36 scaffold544 SAMTools SNP 752501 752501 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold544 SAMTools SNP 753929 753929 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold544 SAMTools SNP 753937 753937 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C127:71 scaffold544 SAMTools SNP 754016 754016 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold544 SAMTools SNP 754378 754378 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold544 SAMTools SNP 756602 756602 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold544 SAMTools SNP 758470 758470 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold544 SAMTools SNP 759228 759228 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 759246 759246 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold544 SAMTools SNP 759623 759623 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold544 SAMTools SNP 760296 760296 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold544 SAMTools SNP 760644 760644 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold544 SAMTools SNP 761170 761170 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C27%2C0:51 scaffold544 SAMTools SNP 761200 761200 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.52%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C178:99 scaffold544 SAMTools SNP 761212 761212 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold544 SAMTools SNP 761223 761223 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold544 SAMTools SNP 761435 761435 204 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C62:65 scaffold544 SAMTools SNP 761540 761540 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C51%2C0:83 scaffold546 SAMTools SNP 24927 24927 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 24929 24929 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold546 SAMTools SNP 24956 24956 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 25049 25049 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C31%2C11%3BMQ%3D48%3BFQ%3D-87%3BPV4%3D0.57%2C0.41%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold546 SAMTools SNP 25400 25400 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold546 SAMTools SNP 26014 26014 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C16%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 30669 30669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C14%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold546 SAMTools SNP 30728 30728 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C37%2C10%2C7%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.6%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold546 SAMTools SNP 31401 31401 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C69%2C37%3BMQ%3D50%3BFQ%3D-263%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C236%2C0:99 scaffold546 SAMTools SNP 31430 31430 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C48%2C0%2C16%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.00098%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold546 SAMTools SNP 31438 31438 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C16%2C39%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.029%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold546 SAMTools SNP 31454 31454 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C8%2C65%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.59%2C0.0043%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold546 SAMTools SNP 32492 32492 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C25%2C12%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.4%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold546 SAMTools SNP 32501 32501 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C7%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.41%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold546 SAMTools SNP 34311 34311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold546 SAMTools SNP 34353 34353 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold546 SAMTools SNP 36893 36893 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C127:41 scaffold546 SAMTools SNP 36989 36989 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.42%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold546 SAMTools SNP 37025 37025 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C39%2C32%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1.3e-07%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 37743 37743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C55%2C22%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 37866 37866 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 39141 39141 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold546 SAMTools SNP 39537 39537 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C0.0047%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold546 SAMTools SNP 39585 39585 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold546 SAMTools SNP 39599 39599 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold546 SAMTools SNP 40045 40045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 40066 40066 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 41854 41854 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C39%2C1%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold546 SAMTools SNP 41899 41899 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C35%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold546 SAMTools SNP 41920 41920 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold546 SAMTools SNP 41938 41938 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 42003 42003 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0208%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.078%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold546 SAMTools SNP 42487 42487 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold546 SAMTools SNP 42548 42548 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold546 SAMTools SNP 42568 42568 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold546 SAMTools SNP 45054 45054 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 45077 45077 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 45980 45980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C16%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 47136 47136 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 48046 48046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold546 SAMTools SNP 48078 48078 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold546 SAMTools SNP 50866 50866 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold546 SAMTools SNP 51036 51036 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold546 SAMTools SNP 51050 51050 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold546 SAMTools SNP 51458 51458 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold546 SAMTools SNP 51485 51485 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold546 SAMTools SNP 54504 54504 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C2%2C3%3BMQ%3D25%3BFQ%3D29%3BPV4%3D0.047%2C0.33%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C100:59 scaffold546 SAMTools SNP 54980 54980 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C0%2C11%3BMQ%3D37%3BFQ%3D12.3%3BPV4%3D0.00027%2C5e-15%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold546 SAMTools SNP 55063 55063 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C13%2C4%3BMQ%3D43%3BFQ%3D50%3BPV4%3D0.067%2C3.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold546 SAMTools SNP 55368 55368 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 55402 55402 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold546 SAMTools SNP 55601 55601 6.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold546 SAMTools SNP 64421 64421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C6%2C19%3BMQ%3D44%3BFQ%3D150%3BPV4%3D0.69%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold546 SAMTools SNP 64515 64515 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.1%2C0.00011%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold546 SAMTools SNP 64866 64866 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold546 SAMTools SNP 76066 76066 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.44%2C1.8e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C152:42 scaffold546 SAMTools SNP 76134 76134 86.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C18%2C0:33 scaffold546 SAMTools SNP 76890 76890 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C17%2C38%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 78908 78908 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C135%2C7%2C19%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold546 SAMTools SNP 79910 79910 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 80322 80322 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C38%2C122%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 80379 80379 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D-4.78%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C24:27 scaffold546 SAMTools SNP 86738 86738 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0046%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C230:50 scaffold546 SAMTools SNP 86741 86741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold546 SAMTools SNP 86780 86780 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.16%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold546 SAMTools SNP 87351 87351 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C130%2C36%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 88506 88506 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C114%2C44%2C166%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C6.8e-08%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 91511 91511 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold546 SAMTools SNP 91514 91514 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold546 SAMTools SNP 100299 100299 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C6%2C74%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.42%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 103226 103226 52.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold546 SAMTools SNP 104563 104563 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.0015%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C166:46 scaffold546 SAMTools SNP 105458 105458 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold546 SAMTools SNP 105722 105722 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold546 SAMTools SNP 105788 105788 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.3%2C1%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold546 SAMTools SNP 108461 108461 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 110194 110194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C15%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold546 SAMTools SNP 110603 110603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 110648 110648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C28%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold546 SAMTools SNP 115476 115476 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C135%2C0:99 scaffold546 SAMTools SNP 116203 116203 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold546 SAMTools SNP 116207 116207 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C10%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D6.7e-05%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold546 SAMTools SNP 118053 118053 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C58%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 118111 118111 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C40%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 119238 119238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C41%2C21%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.09%2C1%2C1.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 119369 119369 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C42%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.9e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C225:37 scaffold546 SAMTools SNP 119375 119375 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C15%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.1e-38%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C246:37 scaffold546 SAMTools SNP 119699 119699 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold546 SAMTools SNP 120316 120316 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C2%2C29%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.068%2C1.2e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold546 SAMTools SNP 120475 120475 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold546 SAMTools SNP 120860 120860 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.56%2C5.8e-06%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold546 SAMTools SNP 123276 123276 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold546 SAMTools SNP 131194 131194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C39%3BMQ%3D50%3BFQ%3D-138%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold546 SAMTools SNP 131221 131221 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C3%2C40%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.04%2C1.6e-22%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold546 SAMTools SNP 132203 132203 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C0%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold546 SAMTools SNP 132215 132215 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold546 SAMTools SNP 132413 132413 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C57%2C0:99 scaffold546 SAMTools SNP 134543 134543 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold546 SAMTools SNP 136427 136427 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold546 SAMTools SNP 141133 141133 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C233:99 scaffold546 SAMTools SNP 141196 141196 79.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C21%2C0:39 scaffold546 SAMTools SNP 141300 141300 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C2%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold546 SAMTools SNP 141316 141316 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C1%2C7%3BMQ%3D49%3BFQ%3D188%3BPV4%3D0.35%2C0.36%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold546 SAMTools SNP 142351 142351 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 142920 142920 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 143893 143893 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.00045%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold546 SAMTools SNP 144449 144449 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C48%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold546 SAMTools SNP 151954 151954 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C35%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold546 SAMTools SNP 152015 152015 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C165%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 161206 161206 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C41:44 scaffold546 SAMTools SNP 163064 163064 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C16%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.014%2C2.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold546 SAMTools SNP 163490 163490 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C54%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C214%2C0:99 scaffold546 SAMTools SNP 164086 164086 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C20%2C2%2C17%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.029%2C4.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold546 SAMTools SNP 167143 167143 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold546 SAMTools SNP 167893 167893 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold546 SAMTools SNP 168001 168001 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold546 SAMTools SNP 197026 197026 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C73:76 scaffold546 SAMTools SNP 197053 197053 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold546 SAMTools SNP 197064 197064 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C162:74 scaffold546 SAMTools SNP 197489 197489 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.55%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold546 SAMTools SNP 197494 197494 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.55%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold546 SAMTools SNP 198013 198013 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold546 SAMTools SNP 198023 198023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold546 SAMTools SNP 198601 198601 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold546 SAMTools SNP 198997 198997 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.66%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold546 SAMTools SNP 199030 199030 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.0032%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 201334 201334 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 201431 201431 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold546 SAMTools SNP 202121 202121 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold546 SAMTools SNP 202127 202127 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold546 SAMTools SNP 202349 202349 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold546 SAMTools SNP 202433 202433 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.053%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C128:95 scaffold546 SAMTools SNP 202487 202487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold546 SAMTools SNP 203172 203172 173 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C216:99 scaffold546 SAMTools SNP 203535 203535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold546 SAMTools SNP 203612 203612 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold546 SAMTools SNP 204032 204032 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold546 SAMTools SNP 205239 205239 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C0%3BMQ%3D47%3BFQ%3D33%3BPV4%3D0.28%2C0.01%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold546 SAMTools SNP 218128 218128 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 221445 221445 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 221446 221446 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 259019 259019 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold546 SAMTools SNP 259037 259037 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold546 SAMTools SNP 259738 259738 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold546 SAMTools SNP 259753 259753 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold546 SAMTools SNP 270174 270174 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 270190 270190 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 273633 273633 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 280310 280310 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold546 SAMTools SNP 280328 280328 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold546 SAMTools SNP 282360 282360 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold546 SAMTools SNP 282774 282774 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C202:99 scaffold546 SAMTools SNP 286214 286214 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.38%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold546 SAMTools SNP 286245 286245 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 287648 287648 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 287660 287660 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 287749 287749 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold546 SAMTools SNP 287783 287783 124 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C169:99 scaffold546 SAMTools SNP 288209 288209 127 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.62%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold546 SAMTools SNP 288219 288219 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold546 SAMTools SNP 288248 288248 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold546 SAMTools SNP 296367 296367 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold546 SAMTools SNP 296757 296757 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C37%2C13%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 299530 299530 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold546 SAMTools SNP 299618 299618 9.97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold546 SAMTools SNP 299930 299930 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C94%3BMQ%3D50%3BFQ%3D-278%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C251%2C0:99 scaffold546 SAMTools SNP 300071 300071 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold546 SAMTools SNP 300261 300261 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold546 SAMTools SNP 300326 300326 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold546 SAMTools SNP 300615 300615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 300786 300786 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C6%2C19%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C5%2C0:9 scaffold546 SAMTools SNP 301017 301017 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C17%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C124:99 scaffold546 SAMTools SNP 301045 301045 51.3 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C24%2C9%2C77%2C0%2C74:27 scaffold546 SAMTools SNP 301154 301154 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 301158 301158 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold546 SAMTools SNP 337946 337946 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 337960 337960 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold546 SAMTools SNP 340801 340801 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold546 SAMTools SNP 340832 340832 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold546 SAMTools SNP 340851 340851 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.22%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold546 SAMTools SNP 340869 340869 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 388098 388098 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 388768 388768 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 388824 388824 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold546 SAMTools SNP 426167 426167 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 426233 426233 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold546 SAMTools SNP 427363 427363 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold546 SAMTools SNP 427376 427376 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold546 SAMTools SNP 427946 427946 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold546 SAMTools SNP 427982 427982 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.33%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold546 SAMTools SNP 428009 428009 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.37%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold546 SAMTools SNP 428050 428050 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 428765 428765 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 428807 428807 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.0025%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold546 SAMTools SNP 428828 428828 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold546 SAMTools SNP 429082 429082 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.37%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold546 SAMTools SNP 429106 429106 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold546 SAMTools SNP 429145 429145 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold546 SAMTools SNP 429448 429448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold546 SAMTools SNP 429460 429460 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold546 SAMTools SNP 430179 430179 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold546 SAMTools SNP 430221 430221 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold546 SAMTools SNP 430230 430230 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold546 SAMTools SNP 431024 431024 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 431057 431057 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C229:81 scaffold546 SAMTools SNP 431287 431287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C0%2C97%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 431314 431314 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C2%2C77%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 431335 431335 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C4%2C69%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 432638 432638 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C89%2C0%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 433884 433884 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold546 SAMTools SNP 434007 434007 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D31%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C69%2C0:99 scaffold546 SAMTools SNP 434834 434834 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D23%3BFQ%3D-30%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold546 SAMTools SNP 444224 444224 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C8%3BMQ%3D43%3BFQ%3D85%3BPV4%3D0.007%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C112:99 scaffold546 SAMTools SNP 446638 446638 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold546 SAMTools SNP 448283 448283 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 448286 448286 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 448329 448329 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold546 SAMTools SNP 448730 448730 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold546 SAMTools SNP 448760 448760 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 449192 449192 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 450642 450642 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 459390 459390 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 462603 462603 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.59%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C200:99 scaffold546 SAMTools SNP 462829 462829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold546 SAMTools SNP 462833 462833 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.37%2C0.42%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold546 SAMTools SNP 462860 462860 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold546 SAMTools SNP 462908 462908 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C11%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold546 SAMTools SNP 463138 463138 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.6%2C1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C222:99 scaffold546 SAMTools SNP 463508 463508 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C21%2C0:39 scaffold546 SAMTools SNP 465850 465850 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 467066 467066 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.54%2C0.00015%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold546 SAMTools SNP 470573 470573 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.023%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C152:99 scaffold546 SAMTools SNP 470597 470597 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.011%2C0.089%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C175:99 scaffold546 SAMTools SNP 470639 470639 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold546 SAMTools SNP 471429 471429 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold546 SAMTools SNP 471468 471468 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D76.9%3BPV4%3D0.2%2C0.063%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C104:99 scaffold546 SAMTools SNP 471830 471830 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold546 SAMTools SNP 471869 471869 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 471900 471900 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 475073 475073 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold546 SAMTools SNP 475200 475200 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold546 SAMTools SNP 475217 475217 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C15%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.49%2C0.2%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold546 SAMTools SNP 479903 479903 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold546 SAMTools SNP 490598 490598 184 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold546 SAMTools SNP 490600 490600 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold546 SAMTools SNP 490822 490822 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 490982 490982 39.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold546 SAMTools SNP 491019 491019 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold546 SAMTools SNP 491175 491175 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C207:99 scaffold546 SAMTools SNP 500047 500047 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold546 SAMTools SNP 500636 500636 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold546 SAMTools SNP 500651 500651 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold546 SAMTools SNP 500653 500653 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.053%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C127:99 scaffold546 SAMTools SNP 500745 500745 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 502868 502868 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 502928 502928 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 502949 502949 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold546 SAMTools SNP 507004 507004 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold546 SAMTools SNP 528274 528274 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 528360 528360 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold546 SAMTools SNP 528792 528792 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 528804 528804 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 528912 528912 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 529288 529288 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 529537 529537 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 530014 530014 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold546 SAMTools SNP 530140 530140 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 530344 530344 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold546 SAMTools SNP 530393 530393 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold546 SAMTools SNP 530671 530671 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold546 SAMTools SNP 530758 530758 54.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold546 SAMTools SNP 531004 531004 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold546 SAMTools SNP 532077 532077 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.37%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold546 SAMTools SNP 532791 532791 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold546 SAMTools SNP 533302 533302 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold546 SAMTools SNP 533315 533315 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 533358 533358 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 534034 534034 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold546 SAMTools SNP 534317 534317 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold546 SAMTools SNP 534600 534600 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C135:46 scaffold546 SAMTools SNP 534644 534644 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold546 SAMTools SNP 534797 534797 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold546 SAMTools SNP 534804 534804 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 534832 534832 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 535272 535272 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 536175 536175 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold546 SAMTools SNP 536214 536214 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold546 SAMTools SNP 536229 536229 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold546 SAMTools SNP 536476 536476 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C20%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold546 SAMTools SNP 536629 536629 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold546 SAMTools SNP 537022 537022 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold546 SAMTools SNP 537093 537093 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold546 SAMTools SNP 538016 538016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C10%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold546 SAMTools SNP 538091 538091 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold546 SAMTools SNP 538123 538123 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold546 SAMTools SNP 538159 538159 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C5%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold546 SAMTools SNP 538174 538174 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C18%2C16%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.22%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold546 SAMTools SNP 538590 538590 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold546 SAMTools SNP 538614 538614 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C190:59 scaffold546 SAMTools SNP 539671 539671 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 540280 540280 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold546 SAMTools SNP 540315 540315 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold546 SAMTools SNP 540385 540385 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold546 SAMTools SNP 540397 540397 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C33%2C0:63 scaffold546 SAMTools SNP 540633 540633 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold546 SAMTools SNP 541022 541022 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 541043 541043 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 541136 541136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 541139 541139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 541945 541945 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C7%3BMQ%3D46%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold546 SAMTools SNP 544124 544124 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold546 SAMTools SNP 544426 544426 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold546 SAMTools SNP 544526 544526 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C39%2C0:75 scaffold546 SAMTools SNP 545227 545227 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D49%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C214:99 scaffold546 SAMTools SNP 545778 545778 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold546 SAMTools SNP 545820 545820 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.42%2C0.29%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold546 SAMTools SNP 545841 545841 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold546 SAMTools SNP 546045 546045 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 546379 546379 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C0.014%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold546 SAMTools SNP 546382 546382 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C0.069%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold546 SAMTools SNP 546415 546415 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C20%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.00026%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C201:99 scaffold546 SAMTools SNP 546588 546588 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.081%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C125:99 scaffold546 SAMTools SNP 546609 546609 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold546 SAMTools SNP 547177 547177 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0016%2C1%2C1%2C3.9e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold546 SAMTools SNP 547198 547198 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C225:99 scaffold546 SAMTools SNP 547204 547204 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D6.9e-05%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold546 SAMTools SNP 547414 547414 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C6e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C182:99 scaffold546 SAMTools SNP 548059 548059 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold546 SAMTools SNP 554405 554405 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 554814 554814 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold546 SAMTools SNP 555316 555316 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.46%2C0.011%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C169:30 scaffold546 SAMTools SNP 555417 555417 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C36%2C0:69 scaffold546 SAMTools SNP 555823 555823 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.04%3BPV4%3D1%2C0.00024%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C32:35 scaffold546 SAMTools SNP 558102 558102 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.55%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C254:39 scaffold546 SAMTools SNP 558341 558341 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C7%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C3.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold546 SAMTools SNP 559253 559253 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C90%2C0:99 scaffold546 SAMTools SNP 559575 559575 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 560237 560237 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 560279 560279 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 561090 561090 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 561134 561134 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold546 SAMTools SNP 561824 561824 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold546 SAMTools SNP 563342 563342 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 563674 563674 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C29%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold546 SAMTools SNP 563711 563711 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold546 SAMTools SNP 564175 564175 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold546 SAMTools SNP 564254 564254 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold546 SAMTools SNP 564644 564644 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C51%2C0:99 scaffold546 SAMTools SNP 565224 565224 35.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold546 SAMTools SNP 565485 565485 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 565500 565500 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold546 SAMTools SNP 565872 565872 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold546 SAMTools SNP 568514 568514 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C157%2C1%3BMQ%3D50%3BFQ%3D-102%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C75%2C0:99 scaffold546 SAMTools SNP 568592 568592 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C149%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 568617 568617 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C19%2C0%2C149%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C48%2C0:93 scaffold546 SAMTools SNP 568875 568875 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold546 SAMTools SNP 568894 568894 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 569051 569051 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold546 SAMTools SNP 572201 572201 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C60%2C0:99 scaffold546 SAMTools SNP 572290 572290 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C13%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D7.2e-05%2C4.7e-16%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C243:99 scaffold546 SAMTools SNP 572697 572697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold546 SAMTools SNP 572736 572736 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C36%2C0:69 scaffold546 SAMTools SNP 573198 573198 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.059%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 574016 574016 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C51%2C5%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 574169 574169 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C57%2C0:99 scaffold546 SAMTools SNP 574745 574745 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C63%3BMQ%3D50%3BFQ%3D173%3BPV4%3D9.2e-06%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold546 SAMTools SNP 575546 575546 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.027%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C210:99 scaffold546 SAMTools SNP 576272 576272 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 576503 576503 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 576532 576532 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold546 SAMTools SNP 576561 576561 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.34%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C7%2C0:12 scaffold546 SAMTools SNP 577243 577243 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold546 SAMTools SNP 577249 577249 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C6%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.026%2C0.29%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold546 SAMTools SNP 578017 578017 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.66%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold546 SAMTools SNP 578095 578095 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold546 SAMTools SNP 578104 578104 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold546 SAMTools SNP 578635 578635 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold546 SAMTools SNP 578695 578695 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.32%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C29:32 scaffold546 SAMTools SNP 578716 578716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold546 SAMTools SNP 579095 579095 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C19%2C0:35 scaffold546 SAMTools SNP 579505 579505 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C212:99 scaffold546 SAMTools SNP 580772 580772 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 580775 580775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 580805 580805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 580865 580865 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold546 SAMTools SNP 580922 580922 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold546 SAMTools SNP 580931 580931 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold546 SAMTools SNP 581505 581505 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold546 SAMTools SNP 581556 581556 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.12%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold546 SAMTools SNP 581612 581612 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold546 SAMTools SNP 582242 582242 77.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C15%2C0:27 scaffold546 SAMTools SNP 582479 582479 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold546 SAMTools SNP 582527 582527 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C230:60 scaffold546 SAMTools SNP 582607 582607 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold546 SAMTools SNP 583025 583025 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C232:99 scaffold546 SAMTools SNP 583040 583040 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 583259 583259 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold546 SAMTools SNP 583284 583284 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 584021 584021 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 584077 584077 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C142:99 scaffold546 SAMTools SNP 584149 584149 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C51%2C0:77 scaffold546 SAMTools SNP 584185 584185 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C51%2C0:95 scaffold546 SAMTools SNP 584340 584340 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold546 SAMTools SNP 584888 584888 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 585197 585197 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C22%2C46%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1.2e-05%2C4.8e-07%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold546 SAMTools SNP 586593 586593 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D21%2C0%2C120%2C33%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold546 SAMTools SNP 587634 587634 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C33%2C0:63 scaffold546 SAMTools SNP 592145 592145 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C65%2C1%2C83%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C6.7e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold546 SAMTools SNP 592425 592425 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold546 SAMTools SNP 592629 592629 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold546 SAMTools SNP 592869 592869 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D504%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C423%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold546 SAMTools SNP 592877 592877 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D245%2C52%2C167%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.00095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 592930 592930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C40%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-14%2C1%2C1%2C1.1e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 592943 592943 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C110%2C0%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 592966 592966 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C175%2C0%2C231%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 623513 623513 6.17 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold546 SAMTools SNP 623607 623607 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold546 SAMTools SNP 625570 625570 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold546 SAMTools SNP 629983 629983 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C40:43 scaffold546 SAMTools SNP 630001 630001 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold546 SAMTools SNP 630028 630028 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 630071 630071 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 632202 632202 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold546 SAMTools SNP 633041 633041 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 633309 633309 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold546 SAMTools SNP 633637 633637 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold546 SAMTools SNP 634085 634085 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold546 SAMTools SNP 634662 634662 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold546 SAMTools SNP 634674 634674 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold546 SAMTools SNP 634844 634844 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold546 SAMTools SNP 634847 634847 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 634859 634859 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold546 SAMTools SNP 635284 635284 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold546 SAMTools SNP 636432 636432 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold546 SAMTools SNP 637124 637124 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold546 SAMTools SNP 637197 637197 87.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C15%2C0:27 scaffold546 SAMTools SNP 637251 637251 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold546 SAMTools SNP 640274 640274 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C16%2C11%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C7.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold546 SAMTools SNP 645192 645192 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 645339 645339 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 645393 645393 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold546 SAMTools SNP 645850 645850 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 645892 645892 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C12%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold546 SAMTools SNP 647011 647011 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold546 SAMTools SNP 648237 648237 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold546 SAMTools SNP 648248 648248 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold546 SAMTools SNP 650725 650725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold546 SAMTools SNP 650740 650740 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.044%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold546 SAMTools SNP 650857 650857 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C2.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C228:99 scaffold547 SAMTools SNP 515 515 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 46768 46768 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold547 SAMTools SNP 50109 50109 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C30%2C0:57 scaffold547 SAMTools SNP 52802 52802 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold547 SAMTools SNP 54642 54642 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.0055%2C0.00012%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold547 SAMTools SNP 54644 54644 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.014%2C0.00023%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold547 SAMTools SNP 54690 54690 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C16%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold547 SAMTools SNP 55694 55694 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C38%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 55770 55770 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C27%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold547 SAMTools SNP 57185 57185 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C9.4e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 57274 57274 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 80219 80219 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold547 SAMTools SNP 103323 103323 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold547 SAMTools SNP 103326 103326 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold547 SAMTools SNP 105782 105782 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold547 SAMTools SNP 105821 105821 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold547 SAMTools SNP 108780 108780 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.23%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 119385 119385 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.074%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold547 SAMTools SNP 119783 119783 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold547 SAMTools SNP 120875 120875 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold547 SAMTools SNP 129061 129061 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold547 SAMTools SNP 129358 129358 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold547 SAMTools SNP 131766 131766 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.0095%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold547 SAMTools SNP 131839 131839 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.37%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold547 SAMTools SNP 136241 136241 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold547 SAMTools SNP 136248 136248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold547 SAMTools SNP 137640 137640 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 145697 145697 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold547 SAMTools SNP 146806 146806 25.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold547 SAMTools SNP 165069 165069 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold547 SAMTools SNP 172383 172383 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 210983 210983 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold547 SAMTools SNP 211213 211213 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold547 SAMTools SNP 211556 211556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 211569 211569 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 219055 219055 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold547 SAMTools SNP 222292 222292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 225284 225284 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 225563 225563 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 227048 227048 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C121:99 scaffold547 SAMTools SNP 227419 227419 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C6.7e-05%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold547 SAMTools SNP 228000 228000 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C120:42 scaffold547 SAMTools SNP 228030 228030 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C42%2C0:81 scaffold547 SAMTools SNP 228071 228071 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D62.5%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C99:92 scaffold547 SAMTools SNP 228108 228108 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C0.044%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C190:99 scaffold547 SAMTools SNP 228767 228767 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold547 SAMTools SNP 229484 229484 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold547 SAMTools SNP 229528 229528 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C242:99 scaffold547 SAMTools SNP 236319 236319 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold547 SAMTools SNP 237131 237131 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold547 SAMTools SNP 237137 237137 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold547 SAMTools SNP 242803 242803 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 243474 243474 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold547 SAMTools SNP 243777 243777 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C22%2C8%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0038%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold547 SAMTools SNP 244134 244134 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C46:49 scaffold547 SAMTools SNP 244438 244438 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold547 SAMTools SNP 246620 246620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.0016%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 246786 246786 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C9%2C2%3BMQ%3D49%3BFQ%3D140%3BPV4%3D0.62%2C0.046%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold547 SAMTools SNP 246808 246808 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C0%3BMQ%3D49%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold547 SAMTools SNP 247571 247571 97.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C18%2C0:33 scaffold547 SAMTools SNP 247663 247663 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold547 SAMTools SNP 248444 248444 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C9%2C10%3BMQ%3D29%3BFQ%3D55%3BPV4%3D1%2C0.3%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C82:85 scaffold547 SAMTools SNP 248450 248450 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C4%2C6%3BMQ%3D33%3BFQ%3D53%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C206:83 scaffold547 SAMTools SNP 254087 254087 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold547 SAMTools SNP 254108 254108 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold547 SAMTools SNP 254648 254648 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C7%2C15%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold547 SAMTools SNP 254692 254692 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold547 SAMTools SNP 254756 254756 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C28%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold547 SAMTools SNP 254950 254950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 254982 254982 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C85:88 scaffold547 SAMTools SNP 255355 255355 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C16%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D8.3e-06%2C1.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C227:56 scaffold547 SAMTools SNP 255799 255799 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold547 SAMTools SNP 255808 255808 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C35:38 scaffold547 SAMTools SNP 255963 255963 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold547 SAMTools SNP 256489 256489 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold547 SAMTools SNP 269412 269412 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold547 SAMTools SNP 269582 269582 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold547 SAMTools SNP 269906 269906 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C19%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.29%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold547 SAMTools SNP 269960 269960 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold547 SAMTools SNP 269966 269966 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold547 SAMTools SNP 270227 270227 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold547 SAMTools SNP 270267 270267 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold547 SAMTools SNP 270347 270347 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.29%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold547 SAMTools SNP 270561 270561 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold547 SAMTools SNP 270570 270570 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold547 SAMTools SNP 270973 270973 177 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C73%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D1%2C0.0016%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C155%2C0%2C190%2C96%2C207:99 scaffold547 SAMTools SNP 271047 271047 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C4.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C199:99 scaffold547 SAMTools SNP 271081 271081 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C26%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C4.6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C248:67 scaffold547 SAMTools SNP 271716 271716 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C9%2C12%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.029%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold547 SAMTools SNP 271874 271874 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold547 SAMTools SNP 272357 272357 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold547 SAMTools SNP 272365 272365 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold547 SAMTools SNP 274681 274681 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold547 SAMTools SNP 274700 274700 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold547 SAMTools SNP 274705 274705 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C253:57 scaffold547 SAMTools SNP 275587 275587 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.013%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold547 SAMTools SNP 275824 275824 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold547 SAMTools SNP 275831 275831 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold547 SAMTools SNP 280663 280663 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 280699 280699 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold547 SAMTools SNP 281227 281227 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold547 SAMTools SNP 282614 282614 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold547 SAMTools SNP 282698 282698 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C75%2C0:99 scaffold547 SAMTools SNP 282773 282773 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold547 SAMTools SNP 282974 282974 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold547 SAMTools SNP 283027 283027 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold547 SAMTools SNP 283452 283452 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 283703 283703 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold547 SAMTools SNP 283742 283742 61.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold547 SAMTools SNP 284828 284828 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 284837 284837 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 284872 284872 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 285138 285138 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 285561 285561 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 286925 286925 209 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C40%2C7%2C228%2C0%2C222:63 scaffold547 SAMTools SNP 286946 286946 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold547 SAMTools SNP 288922 288922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold547 SAMTools SNP 288931 288931 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold547 SAMTools SNP 288960 288960 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold547 SAMTools SNP 289030 289030 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold547 SAMTools SNP 289499 289499 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold547 SAMTools SNP 289694 289694 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C11%2C21%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.44%2C1.2e-50%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold547 SAMTools SNP 289730 289730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C42%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold547 SAMTools SNP 290168 290168 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold547 SAMTools SNP 290195 290195 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C13%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold547 SAMTools SNP 290219 290219 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold547 SAMTools SNP 290697 290697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C45%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold547 SAMTools SNP 290947 290947 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.57%2C0.29%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold547 SAMTools SNP 290961 290961 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold547 SAMTools SNP 291230 291230 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C21%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold547 SAMTools SNP 291295 291295 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.42%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold547 SAMTools SNP 291304 291304 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold547 SAMTools SNP 292117 292117 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold547 SAMTools SNP 292228 292228 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold547 SAMTools SNP 292379 292379 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold547 SAMTools SNP 292761 292761 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.2e-17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 292872 292872 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 293457 293457 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C4.1e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C253:99 scaffold547 SAMTools SNP 293523 293523 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C54%2C0:99 scaffold547 SAMTools SNP 294078 294078 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold547 SAMTools SNP 294096 294096 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold547 SAMTools SNP 294539 294539 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold547 SAMTools SNP 294619 294619 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold547 SAMTools SNP 294667 294667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 294795 294795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 294862 294862 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.58%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold547 SAMTools SNP 295122 295122 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold547 SAMTools SNP 295416 295416 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold547 SAMTools SNP 295446 295446 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold547 SAMTools SNP 295545 295545 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold547 SAMTools SNP 296133 296133 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold547 SAMTools SNP 296636 296636 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold547 SAMTools SNP 296929 296929 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold547 SAMTools SNP 297336 297336 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold547 SAMTools SNP 297369 297369 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C115%2C5%2C12%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold547 SAMTools SNP 298237 298237 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C30%2C0%2C9%3BMQ%3D49%3BFQ%3D17.1%3BPV4%3D0.02%2C1%2C1%2C6.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold547 SAMTools SNP 298245 298245 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C13%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.08%2C0.051%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 301385 301385 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 301407 301407 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 301412 301412 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.092%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold547 SAMTools SNP 310852 310852 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0081%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold547 SAMTools SNP 310903 310903 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 311759 311759 87.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold547 SAMTools SNP 322274 322274 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.14%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C78:81 scaffold547 SAMTools SNP 332313 332313 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.59%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C245:99 scaffold547 SAMTools SNP 334509 334509 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C150:99 scaffold547 SAMTools SNP 335171 335171 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.061%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C172:99 scaffold547 SAMTools SNP 335686 335686 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold547 SAMTools SNP 337951 337951 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold547 SAMTools SNP 338005 338005 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 340077 340077 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C180:99 scaffold547 SAMTools SNP 340582 340582 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.077%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold547 SAMTools SNP 340630 340630 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 340911 340911 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold547 SAMTools SNP 340942 340942 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold547 SAMTools SNP 341083 341083 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold547 SAMTools SNP 342032 342032 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 342525 342525 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold547 SAMTools SNP 342666 342666 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold547 SAMTools SNP 342855 342855 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 342867 342867 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 343743 343743 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 343785 343785 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 343821 343821 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold547 SAMTools SNP 344121 344121 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold547 SAMTools SNP 344148 344148 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.46%2C0.11%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C196:96 scaffold547 SAMTools SNP 344384 344384 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold547 SAMTools SNP 344397 344397 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 344400 344400 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 344457 344457 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold547 SAMTools SNP 344466 344466 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold547 SAMTools SNP 344711 344711 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D32%3BFQ%3D10.6%3BPV4%3D1%2C0.014%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C42:40 scaffold547 SAMTools SNP 346350 346350 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C247:99 scaffold547 SAMTools SNP 346695 346695 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold547 SAMTools SNP 346728 346728 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0066%2C0.037%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold547 SAMTools SNP 346758 346758 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C29%2C2%2C27%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.032%2C8.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold547 SAMTools SNP 346845 346845 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold547 SAMTools SNP 347045 347045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold547 SAMTools SNP 347144 347144 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.43%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C134:99 scaffold547 SAMTools SNP 347147 347147 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.43%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold547 SAMTools SNP 347198 347198 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold547 SAMTools SNP 348084 348084 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 348114 348114 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 348180 348180 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C66%2C0:99 scaffold547 SAMTools SNP 348249 348249 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.11%2C0.2%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold547 SAMTools SNP 348657 348657 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.48%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C209:99 scaffold547 SAMTools SNP 348827 348827 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C16%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold547 SAMTools SNP 348860 348860 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C5%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.048%2C0.49%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold547 SAMTools SNP 348893 348893 58.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C12%2C0:21 scaffold547 SAMTools SNP 348914 348914 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold547 SAMTools SNP 349075 349075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold547 SAMTools SNP 349102 349102 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.045%2C0.032%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold547 SAMTools SNP 349506 349506 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C4%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold547 SAMTools SNP 350026 350026 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0041%2C7.9e-08%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold547 SAMTools SNP 350522 350522 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.0043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold547 SAMTools SNP 351455 351455 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.19%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 351464 351464 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C9.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 351493 351493 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.5%2C0.00019%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold547 SAMTools SNP 351506 351506 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 353261 353261 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.2%2C0.00042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C225:28 scaffold547 SAMTools SNP 357321 357321 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D32%3BPV4%3D9.2e-07%2C0.18%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C109:62 scaffold547 SAMTools SNP 357323 357323 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C15%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D9.2e-07%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C59:62 scaffold547 SAMTools SNP 357413 357413 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C2%2C14%3BMQ%3D42%3BFQ%3D-50%3BPV4%3D0.0031%2C9.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C23%2C0:43 scaffold547 SAMTools SNP 359372 359372 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C77%3BMQ%3D50%3BFQ%3D-119;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C163:99 scaffold547 SAMTools SNP 359584 359584 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold547 SAMTools SNP 359619 359619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold547 SAMTools SNP 363938 363938 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39.8%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C67:70 scaffold547 SAMTools SNP 364023 364023 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold547 SAMTools SNP 369620 369620 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C2%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 369644 369644 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold547 SAMTools SNP 369695 369695 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold547 SAMTools SNP 369746 369746 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold547 SAMTools SNP 369760 369760 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold547 SAMTools SNP 371363 371363 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.085%2C0.11%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold547 SAMTools SNP 371369 371369 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold547 SAMTools SNP 371390 371390 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold547 SAMTools SNP 371416 371416 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold547 SAMTools SNP 371422 371422 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.23%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold547 SAMTools SNP 371444 371444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold547 SAMTools SNP 371820 371820 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 372733 372733 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C47%2C91%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 372773 372773 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C33%2C76%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 373639 373639 21.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold547 SAMTools SNP 375085 375085 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C57%2C14%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold547 SAMTools SNP 375118 375118 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C67%2C26%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 376357 376357 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C59%2C12%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 376378 376378 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C53%2C17%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 376402 376402 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C45%2C13%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 378533 378533 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold547 SAMTools SNP 379523 379523 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold547 SAMTools SNP 379601 379601 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C46%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C6.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold547 SAMTools SNP 379610 379610 59.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold547 SAMTools SNP 379799 379799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 380285 380285 100 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C90%2C0:99 scaffold547 SAMTools SNP 381188 381188 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C142%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C255%2C0:99 scaffold547 SAMTools SNP 381614 381614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 381801 381801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 381841 381841 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 385113 385113 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.044%2C0.059%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold547 SAMTools SNP 385183 385183 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.24%2C0.0012%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold547 SAMTools SNP 390131 390131 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C129:34 scaffold547 SAMTools SNP 398888 398888 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold547 SAMTools SNP 398930 398930 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold547 SAMTools SNP 399568 399568 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold547 SAMTools SNP 399592 399592 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold547 SAMTools SNP 403757 403757 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold547 SAMTools SNP 404656 404656 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 404958 404958 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 406484 406484 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 409407 409407 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.021%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold547 SAMTools SNP 409531 409531 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold547 SAMTools SNP 411181 411181 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold547 SAMTools SNP 422782 422782 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold547 SAMTools SNP 423546 423546 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold547 SAMTools SNP 426597 426597 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold547 SAMTools SNP 434705 434705 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 486578 486578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C23%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1.2e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 486596 486596 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C23%2C29%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.54%2C1.7e-75%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold547 SAMTools SNP 488855 488855 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C23%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold547 SAMTools SNP 492424 492424 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold547 SAMTools SNP 494108 494108 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold547 SAMTools SNP 494474 494474 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold547 SAMTools SNP 494483 494483 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold547 SAMTools SNP 494491 494491 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold547 SAMTools SNP 498788 498788 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.55%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold547 SAMTools SNP 500688 500688 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C48%2C0:93 scaffold547 SAMTools SNP 544925 544925 10.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold547 SAMTools SNP 549388 549388 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold547 SAMTools SNP 549611 549611 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold547 SAMTools SNP 550030 550030 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C27%2C0:51 scaffold547 SAMTools SNP 551724 551724 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold547 SAMTools SNP 551779 551779 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold547 SAMTools SNP 553596 553596 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold547 SAMTools SNP 553944 553944 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C50%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold547 SAMTools SNP 554070 554070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold547 SAMTools SNP 555759 555759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold547 SAMTools SNP 555834 555834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold547 SAMTools SNP 556673 556673 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold547 SAMTools SNP 557085 557085 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold547 SAMTools SNP 557253 557253 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold547 SAMTools SNP 557268 557268 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C15%2C0:27 scaffold547 SAMTools SNP 561854 561854 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold547 SAMTools SNP 563230 563230 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold547 SAMTools SNP 563323 563323 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold547 SAMTools SNP 568305 568305 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D462%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D280%2C0%2C179%2C3%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.061%2C3.1e-217%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold547 SAMTools SNP 568673 568673 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D836%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D178%2C262%2C15%2C134%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold547 SAMTools SNP 569957 569957 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C90:36 scaffold549 SAMTools SNP 4258 4258 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C33%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C172%2C0:99 scaffold549 SAMTools SNP 4355 4355 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold549 SAMTools SNP 4371 4371 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C3%2C14%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.1%2C1.6e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold549 SAMTools SNP 4529 4529 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.6e-05%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold549 SAMTools SNP 5410 5410 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C36%2C0:69 scaffold549 SAMTools SNP 12942 12942 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold549 SAMTools SNP 13618 13618 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C244:99 scaffold549 SAMTools SNP 15505 15505 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold549 SAMTools SNP 15709 15709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C18%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold549 SAMTools SNP 16502 16502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold549 SAMTools SNP 16876 16876 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold549 SAMTools SNP 16885 16885 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold549 SAMTools SNP 17033 17033 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold549 SAMTools SNP 18463 18463 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold549 SAMTools SNP 18505 18505 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.32%2C0.059%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold549 SAMTools SNP 18517 18517 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.23%2C0.0021%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold549 SAMTools SNP 18526 18526 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C85:88 scaffold549 SAMTools SNP 18586 18586 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C186:99 scaffold549 SAMTools SNP 18628 18628 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C221:99 scaffold549 SAMTools SNP 18631 18631 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C247:99 scaffold549 SAMTools SNP 18883 18883 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold549 SAMTools SNP 18887 18887 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold549 SAMTools SNP 18947 18947 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold549 SAMTools SNP 19397 19397 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C33%2C0:63 scaffold549 SAMTools SNP 21259 21259 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C3%3BMQ%3D49%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold549 SAMTools SNP 21277 21277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C17%3BMQ%3D47%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold549 SAMTools SNP 21345 21345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C22%3BMQ%3D39%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold549 SAMTools SNP 22008 22008 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold549 SAMTools SNP 22053 22053 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold549 SAMTools SNP 22808 22808 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.016%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold549 SAMTools SNP 23027 23027 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C253:99 scaffold549 SAMTools SNP 24757 24757 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold549 SAMTools SNP 24935 24935 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 24936 24936 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold549 SAMTools SNP 29557 29557 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold549 SAMTools SNP 34725 34725 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold549 SAMTools SNP 34794 34794 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C36%2C0:69 scaffold549 SAMTools SNP 37140 37140 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 37141 37141 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 37945 37945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold549 SAMTools SNP 37972 37972 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.29%2C0.00079%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C228:90 scaffold549 SAMTools SNP 38020 38020 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold549 SAMTools SNP 38038 38038 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold549 SAMTools SNP 38083 38083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C182:99 scaffold549 SAMTools SNP 39312 39312 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C26%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C123:99 scaffold549 SAMTools SNP 39352 39352 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C16%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold549 SAMTools SNP 39940 39940 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold549 SAMTools SNP 39969 39969 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 40302 40302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold549 SAMTools SNP 40321 40321 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold549 SAMTools SNP 40360 40360 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold549 SAMTools SNP 40656 40656 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C74:77 scaffold549 SAMTools SNP 41029 41029 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold549 SAMTools SNP 41101 41101 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 41167 41167 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold549 SAMTools SNP 41801 41801 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C15%2C0:27 scaffold549 SAMTools SNP 43269 43269 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold549 SAMTools SNP 63177 63177 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C15%2C0:27 scaffold549 SAMTools SNP 63330 63330 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold549 SAMTools SNP 72387 72387 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C45%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold549 SAMTools SNP 73630 73630 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C8%2C38%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold549 SAMTools SNP 73771 73771 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C80%2C4%2C41%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.054%2C3.8e-105%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold549 SAMTools SNP 74479 74479 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C23%2C17%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.41%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold549 SAMTools SNP 74556 74556 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C75%2C1%2C41%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold549 SAMTools SNP 74557 74557 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C75%2C1%2C41%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold549 SAMTools SNP 74845 74845 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C32%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.2%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C231:99 scaffold549 SAMTools SNP 75150 75150 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold549 SAMTools SNP 75165 75165 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C248:99 scaffold549 SAMTools SNP 83159 83159 21.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold549 SAMTools SNP 83419 83419 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold549 SAMTools SNP 83667 83667 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C5%2C1%3BMQ%3D49%3BFQ%3D107%3BPV4%3D0.14%2C1%2C0.065%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold549 SAMTools SNP 83727 83727 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C81%2C0:99 scaffold549 SAMTools SNP 87352 87352 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold549 SAMTools SNP 89320 89320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold549 SAMTools SNP 89630 89630 37.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold549 SAMTools SNP 89748 89748 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold549 SAMTools SNP 90361 90361 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold550 SAMTools SNP 5009 5009 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 5048 5048 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 14978 14978 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold550 SAMTools SNP 14984 14984 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold550 SAMTools SNP 15049 15049 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C6%3BMQ%3D47%3BFQ%3D80%3BPV4%3D0.58%2C0.00058%2C0.22%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C129:99 scaffold550 SAMTools SNP 15059 15059 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D46%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold550 SAMTools SNP 15540 15540 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold550 SAMTools SNP 15582 15582 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D41%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C154:80 scaffold550 SAMTools SNP 16814 16814 17.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C5%2C0:8 scaffold550 SAMTools SNP 16822 16822 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold550 SAMTools SNP 17421 17421 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold550 SAMTools SNP 17831 17831 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C24:27 scaffold550 SAMTools SNP 17840 17840 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.27%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C129:59 scaffold550 SAMTools SNP 17843 17843 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C164:48 scaffold550 SAMTools SNP 17856 17856 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.037%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C210:44 scaffold550 SAMTools SNP 17880 17880 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold550 SAMTools SNP 18973 18973 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold550 SAMTools SNP 18999 18999 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C0.21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C3%2C0:6 scaffold550 SAMTools SNP 19000 19000 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.4%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C3%2C0:6 scaffold550 SAMTools SNP 19576 19576 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold550 SAMTools SNP 19936 19936 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold550 SAMTools SNP 19985 19985 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold550 SAMTools SNP 21643 21643 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold550 SAMTools SNP 21695 21695 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold550 SAMTools SNP 21809 21809 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold550 SAMTools SNP 21984 21984 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold550 SAMTools SNP 22041 22041 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold550 SAMTools SNP 25142 25142 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 25172 25172 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 26155 26155 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold550 SAMTools SNP 27068 27068 144 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C23%2C11%2C171%2C0%2C168:21 scaffold550 SAMTools SNP 27505 27505 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.58%2C9.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C223:95 scaffold550 SAMTools SNP 30891 30891 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C24:27 scaffold550 SAMTools SNP 30952 30952 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold550 SAMTools SNP 31129 31129 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold550 SAMTools SNP 31243 31243 95.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold550 SAMTools SNP 33091 33091 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 33100 33100 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 33176 33176 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold550 SAMTools SNP 33205 33205 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold550 SAMTools SNP 41202 41202 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold550 SAMTools SNP 62621 62621 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 62648 62648 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 63620 63620 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold550 SAMTools SNP 63988 63988 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold550 SAMTools SNP 64294 64294 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold550 SAMTools SNP 65552 65552 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold550 SAMTools SNP 65579 65579 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold550 SAMTools SNP 65835 65835 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 66001 66001 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 71723 71723 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold550 SAMTools SNP 75635 75635 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold550 SAMTools SNP 78519 78519 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold550 SAMTools SNP 78547 78547 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold550 SAMTools SNP 80533 80533 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold550 SAMTools SNP 80562 80562 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold550 SAMTools SNP 80976 80976 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold550 SAMTools SNP 80983 80983 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold550 SAMTools SNP 81291 81291 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C177:43 scaffold550 SAMTools SNP 83723 83723 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 84584 84584 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold550 SAMTools SNP 89772 89772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C261%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold550 SAMTools SNP 90109 90109 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.17%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C236:99 scaffold550 SAMTools SNP 90113 90113 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold550 SAMTools SNP 90999 90999 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C29%3BMQ%3D50%3BFQ%3D-121;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C179%2C85:99 scaffold550 SAMTools SNP 91005 91005 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold550 SAMTools SNP 91763 91763 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C115:99 scaffold550 SAMTools SNP 91772 91772 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C184:99 scaffold550 SAMTools SNP 91793 91793 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.42%2C0.087%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C222:72 scaffold550 SAMTools SNP 91802 91802 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C66:69 scaffold550 SAMTools SNP 92114 92114 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold550 SAMTools SNP 93854 93854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold550 SAMTools SNP 93982 93982 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold550 SAMTools SNP 94139 94139 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C12%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold550 SAMTools SNP 94396 94396 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold550 SAMTools SNP 94438 94438 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold550 SAMTools SNP 94460 94460 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold550 SAMTools SNP 94495 94495 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C36%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 94513 94513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 94872 94872 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 94998 94998 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C29%2C12%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold550 SAMTools SNP 95497 95497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 95638 95638 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C45%2C0:87 scaffold550 SAMTools SNP 96030 96030 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C82:85 scaffold550 SAMTools SNP 97388 97388 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold550 SAMTools SNP 99963 99963 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C96%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 100532 100532 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C39%2C42%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 102199 102199 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C56%2C12%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 102214 102214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C57%2C14%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.0069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 102565 102565 57 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C0%2C10%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.0042%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold550 SAMTools SNP 103284 103284 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 103329 103329 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C0%2C71%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 103779 103779 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C106%2C1%2C22%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold550 SAMTools SNP 105754 105754 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C15%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold550 SAMTools SNP 105988 105988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C10%2C75%2C51%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D0.00021%2C0.0027%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold550 SAMTools SNP 106206 106206 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold550 SAMTools SNP 106714 106714 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C41%2C5%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.015%2C0.18%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold550 SAMTools SNP 106741 106741 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.00049%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold550 SAMTools SNP 106750 106750 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D39%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D8.1e-06%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C208:37 scaffold550 SAMTools SNP 106759 106759 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.089%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C229:99 scaffold550 SAMTools SNP 107084 107084 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C30%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold550 SAMTools SNP 107597 107597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C9%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 107603 107603 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 107606 107606 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C0.039%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 111871 111871 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold550 SAMTools SNP 111895 111895 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold550 SAMTools SNP 111940 111940 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold550 SAMTools SNP 112435 112435 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold550 SAMTools SNP 112658 112658 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold550 SAMTools SNP 115114 115114 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C244:99 scaffold550 SAMTools SNP 115481 115481 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C242:99 scaffold550 SAMTools SNP 115843 115843 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C49%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold550 SAMTools SNP 115915 115915 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold550 SAMTools SNP 115942 115942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold550 SAMTools SNP 116539 116539 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C0.19%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold550 SAMTools SNP 116553 116553 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0077%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold550 SAMTools SNP 116557 116557 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.038%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C169:42 scaffold550 SAMTools SNP 116939 116939 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold550 SAMTools SNP 116948 116948 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold550 SAMTools SNP 116990 116990 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold550 SAMTools SNP 117005 117005 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold550 SAMTools SNP 120895 120895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.26%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 120976 120976 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 122323 122323 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold550 SAMTools SNP 122675 122675 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold550 SAMTools SNP 125432 125432 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.071%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 126406 126406 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.074%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold550 SAMTools SNP 126408 126408 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C0.42%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold550 SAMTools SNP 126415 126415 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold550 SAMTools SNP 126431 126431 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold550 SAMTools SNP 126660 126660 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 126930 126930 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C216:99 scaffold550 SAMTools SNP 127442 127442 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 132745 132745 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold550 SAMTools SNP 134618 134618 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C90%2C0:99 scaffold550 SAMTools SNP 134671 134671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold550 SAMTools SNP 134959 134959 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C29%2C20%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00058%2C0.00041%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold550 SAMTools SNP 135020 135020 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C6:9 scaffold550 SAMTools SNP 135767 135767 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C15%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold550 SAMTools SNP 135806 135806 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C41%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold550 SAMTools SNP 136000 136000 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 136018 136018 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 136543 136543 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C35%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold550 SAMTools SNP 136786 136786 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.00082%2C1.3e-07%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold550 SAMTools SNP 136811 136811 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold550 SAMTools SNP 136883 136883 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 137105 137105 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold550 SAMTools SNP 137654 137654 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold550 SAMTools SNP 137735 137735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold550 SAMTools SNP 138441 138441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C67%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold550 SAMTools SNP 138480 138480 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold550 SAMTools SNP 138546 138546 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold550 SAMTools SNP 138790 138790 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold550 SAMTools SNP 138824 138824 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold550 SAMTools SNP 138861 138861 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C37%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold550 SAMTools SNP 139029 139029 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C28%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold550 SAMTools SNP 139124 139124 88.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C18%2C0:33 scaffold550 SAMTools SNP 139348 139348 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold550 SAMTools SNP 139434 139434 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold550 SAMTools SNP 139579 139579 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C19%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold550 SAMTools SNP 170879 170879 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C87%2C0:99 scaffold550 SAMTools SNP 171316 171316 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold550 SAMTools SNP 172135 172135 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C20%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 172144 172144 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C13%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold550 SAMTools SNP 174028 174028 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.08%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C197:52 scaffold550 SAMTools SNP 174030 174030 111 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.0075%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C174:99 scaffold550 SAMTools SNP 174299 174299 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 200929 200929 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.9e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C107:31 scaffold550 SAMTools SNP 201689 201689 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.3e-07%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C156:47 scaffold550 SAMTools SNP 204318 204318 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C169:60 scaffold550 SAMTools SNP 204493 204493 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.49%2C8.5e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C243:85 scaffold550 SAMTools SNP 205723 205723 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold550 SAMTools SNP 205741 205741 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 205798 205798 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold550 SAMTools SNP 206244 206244 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold550 SAMTools SNP 206271 206271 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C57%2C0:99 scaffold550 SAMTools SNP 206750 206750 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold550 SAMTools SNP 207285 207285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C96%2C4%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 207297 207297 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C95%2C6%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.078%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 207462 207462 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C58%2C12%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold550 SAMTools SNP 207597 207597 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C3.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold550 SAMTools SNP 207744 207744 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C8%2C9%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.36%2C8.8e-12%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold552 SAMTools SNP 1089 1089 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.04%3BPV4%3D1%2C7.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C32:35 scaffold552 SAMTools SNP 1387 1387 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold552 SAMTools SNP 1669 1669 81.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C18%2C0:33 scaffold552 SAMTools SNP 1764 1764 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 2444 2444 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C15%2C0:27 scaffold552 SAMTools SNP 2888 2888 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C40:38 scaffold552 SAMTools SNP 3219 3219 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold552 SAMTools SNP 3302 3302 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold552 SAMTools SNP 3778 3778 34.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold552 SAMTools SNP 4287 4287 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 4725 4725 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 4758 4758 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold552 SAMTools SNP 5014 5014 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 5043 5043 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold552 SAMTools SNP 7076 7076 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold552 SAMTools SNP 7383 7383 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold552 SAMTools SNP 9137 9137 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold552 SAMTools SNP 9626 9626 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 27090 27090 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold552 SAMTools SNP 42537 42537 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00021%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C77:37 scaffold552 SAMTools SNP 56571 56571 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C39%2C9%2C29%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.13%2C2.8e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold552 SAMTools SNP 56596 56596 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C22%2C8%2C15%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.13%2C6.5e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold552 SAMTools SNP 56883 56883 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C30%2C7%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.41%2C6.4e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold552 SAMTools SNP 61117 61117 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.079%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C69:72 scaffold552 SAMTools SNP 61148 61148 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold552 SAMTools SNP 64430 64430 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold552 SAMTools SNP 64461 64461 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold552 SAMTools SNP 70373 70373 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold552 SAMTools SNP 92268 92268 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.026%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold552 SAMTools SNP 133578 133578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 136703 136703 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C24%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C148%2C0:99 scaffold552 SAMTools SNP 137386 137386 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold552 SAMTools SNP 138095 138095 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C7%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 138608 138608 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C222:99 scaffold552 SAMTools SNP 138609 138609 192 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C146:99 scaffold552 SAMTools SNP 138630 138630 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 139081 139081 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C2%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 139129 139129 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold552 SAMTools SNP 139291 139291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold552 SAMTools SNP 139534 139534 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.22%2C0.35%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold552 SAMTools SNP 139755 139755 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold552 SAMTools SNP 141602 141602 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold552 SAMTools SNP 147234 147234 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold552 SAMTools SNP 151058 151058 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C75%2C0:99 scaffold552 SAMTools SNP 152476 152476 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold552 SAMTools SNP 164540 164540 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.17%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold552 SAMTools SNP 164574 164574 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.6%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold552 SAMTools SNP 171907 171907 47.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold552 SAMTools SNP 172007 172007 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.049%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold552 SAMTools SNP 180170 180170 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.33%2C0.38%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C66:66 scaffold552 SAMTools SNP 180612 180612 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold552 SAMTools SNP 187308 187308 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 189138 189138 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D440%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D221%2C61%2C152%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D3.4e-13%2C3.6e-14%2C1%2C8.5e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold552 SAMTools SNP 189190 189190 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1271%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D495%2C183%2C319%2C200%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 197518 197518 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold552 SAMTools SNP 199833 199833 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold552 SAMTools SNP 199872 199872 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold552 SAMTools SNP 199908 199908 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold552 SAMTools SNP 199941 199941 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold552 SAMTools SNP 200572 200572 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold552 SAMTools SNP 201492 201492 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold552 SAMTools SNP 201501 201501 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold552 SAMTools SNP 201784 201784 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold552 SAMTools SNP 201805 201805 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold552 SAMTools SNP 205086 205086 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C42%2C0:77 scaffold552 SAMTools SNP 205202 205202 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.037%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold552 SAMTools SNP 205205 205205 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold552 SAMTools SNP 205223 205223 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold552 SAMTools SNP 205277 205277 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C5%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 205637 205637 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C58%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 205649 205649 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C60%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 205736 205736 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.042%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 206320 206320 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 208230 208230 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold552 SAMTools SNP 208317 208317 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold552 SAMTools SNP 208601 208601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold552 SAMTools SNP 208648 208648 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold552 SAMTools SNP 209337 209337 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold552 SAMTools SNP 209355 209355 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold552 SAMTools SNP 209376 209376 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold552 SAMTools SNP 209462 209462 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold552 SAMTools SNP 209490 209490 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C232:99 scaffold552 SAMTools SNP 209880 209880 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.064%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C249:47 scaffold552 SAMTools SNP 209882 209882 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C207:99 scaffold552 SAMTools SNP 209886 209886 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D22%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C241:31 scaffold552 SAMTools SNP 209925 209925 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold552 SAMTools SNP 210225 210225 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold552 SAMTools SNP 210240 210240 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 210496 210496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold552 SAMTools SNP 210508 210508 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold552 SAMTools SNP 210541 210541 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C12%2C0:21 scaffold552 SAMTools SNP 210542 210542 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0021%2C0.028%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C215:50 scaffold552 SAMTools SNP 210552 210552 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0081%2C9.9e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold552 SAMTools SNP 211046 211046 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C8%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D5.1e-05%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold552 SAMTools SNP 211069 211069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 211284 211284 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold552 SAMTools SNP 211290 211290 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.55%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C253:99 scaffold552 SAMTools SNP 211313 211313 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold552 SAMTools SNP 211317 211317 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold552 SAMTools SNP 211776 211776 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold552 SAMTools SNP 211817 211817 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold552 SAMTools SNP 212285 212285 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold552 SAMTools SNP 212286 212286 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold552 SAMTools SNP 212303 212303 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C44%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 212363 212363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C40%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold552 SAMTools SNP 214923 214923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C0.099%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 215266 215266 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold552 SAMTools SNP 215682 215682 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold552 SAMTools SNP 215694 215694 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold552 SAMTools SNP 215915 215915 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold552 SAMTools SNP 218116 218116 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 218492 218492 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 218522 218522 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold552 SAMTools SNP 219710 219710 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold552 SAMTools SNP 220533 220533 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.53%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold552 SAMTools SNP 220542 220542 63.8 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold552 SAMTools SNP 222067 222067 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold552 SAMTools SNP 222301 222301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold552 SAMTools SNP 222703 222703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C32%2C16%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 222922 222922 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 223838 223838 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.39%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold552 SAMTools SNP 226574 226574 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D3%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C78%2C0:66 scaffold556 SAMTools SNP 134 134 48.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold556 SAMTools SNP 321 321 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.58%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold556 SAMTools SNP 364 364 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C66%2C0:99 scaffold556 SAMTools SNP 418 418 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold556 SAMTools SNP 2546 2546 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold556 SAMTools SNP 13685 13685 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 14870 14870 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 14961 14961 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 19343 19343 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold556 SAMTools SNP 65237 65237 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00083%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold556 SAMTools SNP 66098 66098 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold556 SAMTools SNP 67974 67974 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C8%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C237:99 scaffold556 SAMTools SNP 68091 68091 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C35:38 scaffold556 SAMTools SNP 73506 73506 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 76221 76221 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold556 SAMTools SNP 120851 120851 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold556 SAMTools SNP 121030 121030 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 129988 129988 32.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold556 SAMTools SNP 141938 141938 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C53%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C244:28 scaffold556 SAMTools SNP 178251 178251 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C255%2C0:99 scaffold556 SAMTools SNP 180638 180638 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C33%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold556 SAMTools SNP 181554 181554 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.00066;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C245:61 scaffold556 SAMTools SNP 182298 182298 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold556 SAMTools SNP 182300 182300 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold556 SAMTools SNP 182356 182356 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.39%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C223:99 scaffold556 SAMTools SNP 182746 182746 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold556 SAMTools SNP 183932 183932 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold556 SAMTools SNP 183947 183947 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold556 SAMTools SNP 184437 184437 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold556 SAMTools SNP 184587 184587 18.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold556 SAMTools SNP 220618 220618 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C160%2C248%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.39%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 220648 220648 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold556 SAMTools SNP 221282 221282 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D822%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C457%2C28%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.8e-34%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C255%2C0:99 scaffold556 SAMTools SNP 221323 221323 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D456%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C11%2C35%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C3.6e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C82%2C0:99 scaffold556 SAMTools SNP 221418 221418 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D724%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C311%2C134%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-15%2C1.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 222314 222314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 222658 222658 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C63%2C0:99 scaffold556 SAMTools SNP 223770 223770 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C41%2C68%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.38%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 223953 223953 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 224007 224007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C41%3BMQ%3D50%3BFQ%3D-217%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold556 SAMTools SNP 224070 224070 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1028%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C986%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 224603 224603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 224842 224842 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C43%2C29%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 224994 224994 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C49%2C85%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C0.2%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 225599 225599 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C41%2C73%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 226446 226446 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C28%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold556 SAMTools SNP 228057 228057 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C190%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.05%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 228175 228175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 228730 228730 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C17%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.034%2C0.23%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 229604 229604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold556 SAMTools SNP 229627 229627 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.54%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C251:99 scaffold556 SAMTools SNP 229754 229754 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00032%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold556 SAMTools SNP 230376 230376 174 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C42%2C13%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.042%2C0.12%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold556 SAMTools SNP 230381 230381 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 230557 230557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C309%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 230588 230588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1110%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C277%2C616%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.43%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 232690 232690 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D555%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C30%2C0:57 scaffold556 SAMTools SNP 232954 232954 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C104%2C5%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-08%2C9.9e-34%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 233398 233398 75.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold556 SAMTools SNP 233455 233455 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C238%2C11%2C157%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0066%2C2.3e-226%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold556 SAMTools SNP 233980 233980 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C4.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C107:39 scaffold556 SAMTools SNP 234082 234082 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C210%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.6e-09%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 234263 234263 26.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold556 SAMTools SNP 234608 234608 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold556 SAMTools SNP 234621 234621 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold556 SAMTools SNP 234900 234900 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C44%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold556 SAMTools SNP 235134 235134 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C44%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold556 SAMTools SNP 235249 235249 13.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold556 SAMTools SNP 235279 235279 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold556 SAMTools SNP 235331 235331 42.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold556 SAMTools SNP 235332 235332 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C67:43 scaffold556 SAMTools SNP 235633 235633 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold556 SAMTools SNP 236059 236059 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.29%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold556 SAMTools SNP 236161 236161 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold556 SAMTools SNP 236170 236170 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold556 SAMTools SNP 237063 237063 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C48:75 scaffold556 SAMTools SNP 237596 237596 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.12%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold556 SAMTools SNP 237601 237601 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold556 SAMTools SNP 237652 237652 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold556 SAMTools SNP 237976 237976 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold556 SAMTools SNP 237994 237994 168 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C54%2C224%2C0%2C209:99 scaffold556 SAMTools SNP 239432 239432 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C28%2C21%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.03%2C3.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold556 SAMTools SNP 239440 239440 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C12%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C4.6e-16%2C1%2C2.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 239514 239514 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C9%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.081%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold556 SAMTools SNP 239825 239825 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C37%2C14%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.18%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 240062 240062 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C25%2C30%2C19%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.32%2C1%2C0.16%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 240119 240119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C28%3BMQ%3D41%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold556 SAMTools SNP 240122 240122 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C5%2C11%3BMQ%3D44%3BFQ%3D207%3BPV4%3D0.013%2C1%2C0.22%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold556 SAMTools SNP 240123 240123 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C0%2C18%3BMQ%3D43%3BFQ%3D127%3BPV4%3D0.002%2C0.15%2C0.0017%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold556 SAMTools SNP 241209 241209 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.017%2C0.14%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold556 SAMTools SNP 241212 241212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C11%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold556 SAMTools SNP 241242 241242 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold556 SAMTools SNP 241296 241296 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold556 SAMTools SNP 242507 242507 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C28%2C13%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.79%2C1%2C1%2C8e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold556 SAMTools SNP 245374 245374 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold556 SAMTools SNP 260909 260909 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold556 SAMTools SNP 262217 262217 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C19%2C112%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.027%2C8.8e-113%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C240:87 scaffold556 SAMTools SNP 262369 262369 134 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C0%2C13%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.00021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold556 SAMTools SNP 262370 262370 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C27%2C19%3BMQ%3D50%3BFQ%3D137%3BPV4%3D9.1e-05%2C0.36%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold556 SAMTools SNP 274648 274648 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold556 SAMTools SNP 276001 276001 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C34%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 277215 277215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 277259 277259 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C66%2C10%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C2.4e-19%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 277610 277610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold556 SAMTools SNP 277635 277635 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.55%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold556 SAMTools SNP 277705 277705 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold556 SAMTools SNP 277906 277906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 277912 277912 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C1%2C19%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.11%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold556 SAMTools SNP 277976 277976 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold556 SAMTools SNP 277980 277980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold556 SAMTools SNP 279759 279759 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C48%2C0:93 scaffold556 SAMTools SNP 281463 281463 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C31%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.77%2C0.27%2C0.067%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 285331 285331 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold556 SAMTools SNP 285607 285607 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C6%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.054%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 286664 286664 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 286833 286833 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold556 SAMTools SNP 286836 286836 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C21%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold556 SAMTools SNP 286950 286950 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 286992 286992 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 287184 287184 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C19%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.055%2C0.35%2C1%2C6.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold556 SAMTools SNP 287214 287214 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C0%2C37%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1.4e-06%2C9.5e-28%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold556 SAMTools SNP 287364 287364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C22%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold556 SAMTools SNP 287522 287522 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C44%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold556 SAMTools SNP 287797 287797 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 287935 287935 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.014%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold556 SAMTools SNP 287940 287940 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.14%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold556 SAMTools SNP 288004 288004 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C110%2C13%3BMQ%3D50%3BFQ%3D-259%3BPV4%3D0.037%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold556 SAMTools SNP 288270 288270 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C4%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D6.1e-08%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold556 SAMTools SNP 288345 288345 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C108%2C76%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D5.1e-52%2C2.3e-134%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold556 SAMTools SNP 288427 288427 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold556 SAMTools SNP 288486 288486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 288501 288501 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 288765 288765 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold556 SAMTools SNP 288937 288937 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C0.017%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold556 SAMTools SNP 288952 288952 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold556 SAMTools SNP 288972 288972 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 288987 288987 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold556 SAMTools SNP 289230 289230 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold556 SAMTools SNP 289239 289239 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C29%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold556 SAMTools SNP 289326 289326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C64%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold556 SAMTools SNP 289341 289341 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold556 SAMTools SNP 289572 289572 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C9%2C9%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold556 SAMTools SNP 289581 289581 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C10%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold556 SAMTools SNP 289730 289730 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 289740 289740 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C19%2C52%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 289956 289956 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C60%2C2%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.22%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold556 SAMTools SNP 291938 291938 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 292022 292022 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C17%2C39%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.012%2C1%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold556 SAMTools SNP 293655 293655 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C27%2C7%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold556 SAMTools SNP 293658 293658 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C23%2C7%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.04%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold556 SAMTools SNP 293805 293805 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 294101 294101 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C20%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold556 SAMTools SNP 294458 294458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C29%2C33%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C2e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 295128 295128 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C5%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.24%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold556 SAMTools SNP 295981 295981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C60%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 296022 296022 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C14%2C40%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0015%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 296025 296025 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C18%2C2%2C14%3BMQ%3D50%3BFQ%3D83%3BPV4%3D6.7e-08%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold556 SAMTools SNP 296409 296409 124 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C4%2C8%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold556 SAMTools SNP 296471 296471 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C120%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 296706 296706 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C55%2C15%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 297128 297128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold556 SAMTools SNP 298124 298124 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C12%2C5%2C3%3BMQ%3D49%3BFQ%3D82%3BPV4%3D0.35%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold556 SAMTools SNP 298360 298360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C51%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 298400 298400 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C22%2C5%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.72%2C0.036%2C1%2C2.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold556 SAMTools SNP 298917 298917 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold556 SAMTools SNP 299172 299172 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold556 SAMTools SNP 299551 299551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 299746 299746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C20%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold556 SAMTools SNP 300039 300039 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 300168 300168 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C6%2C141%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.52%2C1.6e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold556 SAMTools SNP 300480 300480 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.084%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold556 SAMTools SNP 300678 300678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold556 SAMTools SNP 300708 300708 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C32%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 300850 300850 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 300868 300868 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C7%2C41%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 301100 301100 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold556 SAMTools SNP 301102 301102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold556 SAMTools SNP 301305 301305 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 301457 301457 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold556 SAMTools SNP 301660 301660 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C41%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 301698 301698 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C1%2C18%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.025%2C0.0005%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold556 SAMTools SNP 301907 301907 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C10%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0063%2C1.2e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold556 SAMTools SNP 301948 301948 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold556 SAMTools SNP 302290 302290 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.45%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold556 SAMTools SNP 302314 302314 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold556 SAMTools SNP 302380 302380 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold556 SAMTools SNP 302710 302710 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C8%2C92%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 302832 302832 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C110%2C26%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 302915 302915 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold556 SAMTools SNP 302916 302916 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold556 SAMTools SNP 303538 303538 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 303570 303570 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C10%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.043%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold556 SAMTools SNP 303755 303755 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C15%3BMQ%3D33%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C81%2C0:99 scaffold556 SAMTools SNP 304204 304204 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C48%2C0:89 scaffold556 SAMTools SNP 304643 304643 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C3%3BMQ%3D42%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold556 SAMTools SNP 305087 305087 199 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0429%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D28%2C45%2C4%2C15%3BMQ%3D22%3BFQ%3D-13.2%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C14:17 scaffold556 SAMTools SNP 305308 305308 58.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold556 SAMTools SNP 305466 305466 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold556 SAMTools SNP 305500 305500 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 305628 305628 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C6%3BMQ%3D47%3BFQ%3D118%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold556 SAMTools SNP 305839 305839 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D33%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C5%2C0:9 scaffold556 SAMTools SNP 306015 306015 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C6%2C55%2C4%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.75%2C1%2C0.00016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 307264 307264 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C18%2C7%2C3%3BMQ%3D38%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold556 SAMTools SNP 307300 307300 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C7%2C4%3BMQ%3D39%3BFQ%3D70%3BPV4%3D0.47%2C1%2C0.018%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C170:99 scaffold556 SAMTools SNP 307301 307301 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C3%3BMQ%3D37%3BFQ%3D67%3BPV4%3D0.36%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C183:97 scaffold556 SAMTools SNP 307924 307924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold556 SAMTools SNP 308620 308620 34 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C35%2C25%2C33%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1.1e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold556 SAMTools SNP 308794 308794 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold556 SAMTools SNP 309344 309344 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C3.6e-13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C245:86 scaffold556 SAMTools SNP 309958 309958 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C60%2C0:99 scaffold556 SAMTools SNP 310086 310086 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold556 SAMTools SNP 310408 310408 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold556 SAMTools SNP 310690 310690 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 310722 310722 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 310971 310971 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0047%2C2.8e-07%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold556 SAMTools SNP 311173 311173 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 311201 311201 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.67%2C2.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold556 SAMTools SNP 311372 311372 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C8%2C34%2C6%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.57%2C3.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold556 SAMTools SNP 311426 311426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold556 SAMTools SNP 311733 311733 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C37%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C166%2C0:99 scaffold556 SAMTools SNP 311984 311984 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold556 SAMTools SNP 312399 312399 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold556 SAMTools SNP 312404 312404 166 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.49%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold556 SAMTools SNP 312817 312817 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.26%2C0.0056%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold556 SAMTools SNP 313031 313031 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C247:99 scaffold556 SAMTools SNP 313066 313066 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C16%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C2.3e-12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C245:99 scaffold556 SAMTools SNP 313235 313235 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.00022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold556 SAMTools SNP 313456 313456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C64%2C8%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 313877 313877 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.015%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold556 SAMTools SNP 313882 313882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 314101 314101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold556 SAMTools SNP 314260 314260 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold556 SAMTools SNP 314261 314261 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold556 SAMTools SNP 314265 314265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold556 SAMTools SNP 315636 315636 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold556 SAMTools SNP 318128 318128 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C123:44 scaffold556 SAMTools SNP 318209 318209 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold556 SAMTools SNP 330310 330310 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 330392 330392 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C208:50 scaffold556 SAMTools SNP 330531 330531 97.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C15%2C0:27 scaffold556 SAMTools SNP 330545 330545 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C21%2C2%3BMQ%3D46%3BFQ%3D144%3BPV4%3D0.28%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold556 SAMTools SNP 330597 330597 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C99%2C0:99 scaffold556 SAMTools SNP 330913 330913 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C102%2C0:99 scaffold556 SAMTools SNP 332836 332836 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.59%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold556 SAMTools SNP 333265 333265 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C5%2C18%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C5.9e-10%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold556 SAMTools SNP 333547 333547 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C4e-12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C140:99 scaffold556 SAMTools SNP 337831 337831 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold556 SAMTools SNP 339434 339434 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.29%2C0.0065%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold556 SAMTools SNP 343368 343368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold556 SAMTools SNP 344001 344001 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold556 SAMTools SNP 344519 344519 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.22%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold556 SAMTools SNP 349978 349978 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold556 SAMTools SNP 352532 352532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C19%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C3.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 352845 352845 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C28%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold556 SAMTools SNP 353282 353282 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold556 SAMTools SNP 353606 353606 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C36%2C5%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 353648 353648 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 355608 355608 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.33%2C7.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C138:59 scaffold556 SAMTools SNP 356892 356892 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 356907 356907 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C51%2C0:99 scaffold556 SAMTools SNP 356976 356976 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold556 SAMTools SNP 357468 357468 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C33%2C17%2C31%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.018%2C1.3e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold556 SAMTools SNP 358408 358408 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 361305 361305 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 361474 361474 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.014%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold556 SAMTools SNP 369901 369901 59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C8%3BMQ%3D46%3BFQ%3D57.9%3BPV4%3D0.007%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C87:88 scaffold556 SAMTools SNP 370818 370818 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold556 SAMTools SNP 374647 374647 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D40%3BFQ%3D31.9%3BPV4%3D0.49%2C0.00077%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C75:62 scaffold556 SAMTools SNP 374805 374805 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C3e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C77:34 scaffold556 SAMTools SNP 383621 383621 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C89%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C255%2C0:72 scaffold556 SAMTools SNP 389188 389188 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C18%2C0%3BMQ%3D36%3BFQ%3D153%3BPV4%3D0.00063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold556 SAMTools SNP 389203 389203 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C15%2C4%2C1%3BMQ%3D35%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold556 SAMTools SNP 389378 389378 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C4%2C2%3BMQ%3D32%3BFQ%3D-31%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C4%2C0:7 scaffold556 SAMTools SNP 389588 389588 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C4%2C1%3BMQ%3D45%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold556 SAMTools SNP 389604 389604 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C10%2C0%3BMQ%3D45%3BFQ%3D141%3BPV4%3D0.15%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold556 SAMTools SNP 389625 389625 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C4%3BMQ%3D43%3BFQ%3D120%3BPV4%3D0.089%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C212:99 scaffold556 SAMTools SNP 390272 390272 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C3%3BMQ%3D35%3BFQ%3D43%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C153:73 scaffold556 SAMTools SNP 390876 390876 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D32%3BFQ%3D-30%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C3%2C0:6 scaffold556 SAMTools SNP 394214 394214 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C93%2C0:99 scaffold556 SAMTools SNP 402719 402719 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold556 SAMTools SNP 403306 403306 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.2%2C0.00012%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold556 SAMTools SNP 405418 405418 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.026%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 405744 405744 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.018%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold556 SAMTools SNP 406085 406085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold556 SAMTools SNP 406100 406100 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold556 SAMTools SNP 406426 406426 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold556 SAMTools SNP 406438 406438 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 406528 406528 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold556 SAMTools SNP 407994 407994 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold556 SAMTools SNP 408281 408281 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold556 SAMTools SNP 408296 408296 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C20%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold556 SAMTools SNP 408692 408692 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold556 SAMTools SNP 408917 408917 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 410937 410937 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold556 SAMTools SNP 412253 412253 25.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold556 SAMTools SNP 412279 412279 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold556 SAMTools SNP 412671 412671 36.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold556 SAMTools SNP 412696 412696 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold556 SAMTools SNP 412996 412996 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold556 SAMTools SNP 413063 413063 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C241:66 scaffold556 SAMTools SNP 413132 413132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold556 SAMTools SNP 415309 415309 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0017%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 416478 416478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.44%2C0.36%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold556 SAMTools SNP 417491 417491 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 418077 418077 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold556 SAMTools SNP 418110 418110 96 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C95%2C86%2C134%2C0%2C121:16 scaffold556 SAMTools SNP 418372 418372 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold556 SAMTools SNP 418858 418858 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 418963 418963 78.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold556 SAMTools SNP 419720 419720 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C33%2C0:63 scaffold556 SAMTools SNP 420300 420300 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.33%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C113:99 scaffold556 SAMTools SNP 420333 420333 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold556 SAMTools SNP 420458 420458 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold556 SAMTools SNP 420486 420486 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C141:99 scaffold556 SAMTools SNP 420701 420701 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.57%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold556 SAMTools SNP 420842 420842 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C30%2C0:57 scaffold556 SAMTools SNP 420868 420868 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C0.056%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold556 SAMTools SNP 421424 421424 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold556 SAMTools SNP 421709 421709 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold556 SAMTools SNP 421730 421730 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.57%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C217:99 scaffold556 SAMTools SNP 422551 422551 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold556 SAMTools SNP 422878 422878 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold556 SAMTools SNP 423768 423768 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.025%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold556 SAMTools SNP 424225 424225 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.029%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold556 SAMTools SNP 425118 425118 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D80.8%3BPV4%3D0.14%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C122:99 scaffold556 SAMTools SNP 426358 426358 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold556 SAMTools SNP 426619 426619 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold556 SAMTools SNP 430141 430141 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold556 SAMTools SNP 430754 430754 181 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C185:99 scaffold556 SAMTools SNP 430868 430868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold556 SAMTools SNP 431376 431376 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold556 SAMTools SNP 432500 432500 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold556 SAMTools SNP 432521 432521 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.0047%2C1.4e-05%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C195:99 scaffold556 SAMTools SNP 432770 432770 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.042%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 433721 433721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 434262 434262 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold556 SAMTools SNP 437044 437044 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 437074 437074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold556 SAMTools SNP 437087 437087 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0026%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold556 SAMTools SNP 443915 443915 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold556 SAMTools SNP 444674 444674 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold556 SAMTools SNP 445509 445509 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold556 SAMTools SNP 445518 445518 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C34:37 scaffold556 SAMTools SNP 445572 445572 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.02%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold556 SAMTools SNP 446589 446589 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold556 SAMTools SNP 446980 446980 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold556 SAMTools SNP 450231 450231 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 451310 451310 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold556 SAMTools SNP 453297 453297 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold556 SAMTools SNP 454749 454749 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold556 SAMTools SNP 454810 454810 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.6e-11%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold556 SAMTools SNP 454834 454834 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.58%2C5.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold556 SAMTools SNP 460529 460529 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold556 SAMTools SNP 474421 474421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 474442 474442 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold556 SAMTools SNP 476751 476751 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 1011 1011 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 1511 1511 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold557 SAMTools SNP 1566 1566 168 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C8%3BMQ%3D46%3BFQ%3D99%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C126:99 scaffold557 SAMTools SNP 1791 1791 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold557 SAMTools SNP 4364 4364 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 6234 6234 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold557 SAMTools SNP 6241 6241 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 7015 7015 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 7054 7054 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 7187 7187 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold557 SAMTools SNP 7408 7408 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D4.69%3BPV4%3D0.33%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold557 SAMTools SNP 11196 11196 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C24%2C0:45 scaffold557 SAMTools SNP 11247 11247 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold557 SAMTools SNP 12099 12099 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold557 SAMTools SNP 12102 12102 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold557 SAMTools SNP 12168 12168 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold557 SAMTools SNP 13496 13496 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold557 SAMTools SNP 13643 13643 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold557 SAMTools SNP 14040 14040 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold557 SAMTools SNP 14057 14057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold557 SAMTools SNP 14422 14422 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C6%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold557 SAMTools SNP 14435 14435 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold557 SAMTools SNP 17890 17890 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C27%2C0:51 scaffold557 SAMTools SNP 17914 17914 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D48%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold557 SAMTools SNP 19677 19677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold557 SAMTools SNP 21867 21867 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold557 SAMTools SNP 21901 21901 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C28%3BMQ%3D49%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold557 SAMTools SNP 22368 22368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 43553 43553 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold557 SAMTools SNP 43780 43780 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 43798 43798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 57132 57132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold557 SAMTools SNP 60780 60780 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C217:39 scaffold557 SAMTools SNP 61143 61143 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold557 SAMTools SNP 71169 71169 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold557 SAMTools SNP 71658 71658 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold557 SAMTools SNP 71739 71739 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold557 SAMTools SNP 72008 72008 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold557 SAMTools SNP 73585 73585 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold557 SAMTools SNP 73962 73962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold557 SAMTools SNP 74249 74249 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold557 SAMTools SNP 74369 74369 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold557 SAMTools SNP 75292 75292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 75866 75866 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 78372 78372 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 78390 78390 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 78808 78808 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold557 SAMTools SNP 79105 79105 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold557 SAMTools SNP 80490 80490 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold557 SAMTools SNP 80904 80904 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold557 SAMTools SNP 80937 80937 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 81287 81287 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 81311 81311 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 81350 81350 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 82259 82259 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 143169 143169 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold557 SAMTools SNP 143196 143196 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.031%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold557 SAMTools SNP 143713 143713 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C74:77 scaffold557 SAMTools SNP 166936 166936 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold557 SAMTools SNP 166963 166963 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold557 SAMTools SNP 223529 223529 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold557 SAMTools SNP 223892 223892 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C32%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C3e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold557 SAMTools SNP 224327 224327 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold557 SAMTools SNP 224345 224345 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold557 SAMTools SNP 226002 226002 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C10%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.027%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold557 SAMTools SNP 226005 226005 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold557 SAMTools SNP 226035 226035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C41%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0062%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 226074 226074 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 226913 226913 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C75%2C0:99 scaffold557 SAMTools SNP 226937 226937 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 230698 230698 24.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold557 SAMTools SNP 232278 232278 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold557 SAMTools SNP 233103 233103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 233606 233606 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold557 SAMTools SNP 233959 233959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold557 SAMTools SNP 235604 235604 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C245:63 scaffold557 SAMTools SNP 236560 236560 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold557 SAMTools SNP 237207 237207 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold557 SAMTools SNP 238248 238248 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold557 SAMTools SNP 239809 239809 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.36%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold557 SAMTools SNP 239848 239848 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 239872 239872 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.52%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold557 SAMTools SNP 241036 241036 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.033%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C223:99 scaffold557 SAMTools SNP 241619 241619 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.22%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold557 SAMTools SNP 241685 241685 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C209:99 scaffold557 SAMTools SNP 242057 242057 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.64%2C0.35%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold557 SAMTools SNP 242165 242165 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold557 SAMTools SNP 243182 243182 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold557 SAMTools SNP 243649 243649 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0027%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold557 SAMTools SNP 245899 245899 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.57%2C0.19%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold557 SAMTools SNP 245902 245902 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold557 SAMTools SNP 246292 246292 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.32%2C1.6e-34%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C244:49 scaffold557 SAMTools SNP 246769 246769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold557 SAMTools SNP 246818 246818 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0033%2C2.3e-18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold557 SAMTools SNP 246892 246892 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C14%2C19%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.32%2C6.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C70:73 scaffold557 SAMTools SNP 247156 247156 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold557 SAMTools SNP 249034 249034 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C30%2C0:57 scaffold557 SAMTools SNP 250032 250032 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C9.3e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C127:33 scaffold557 SAMTools SNP 252590 252590 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C52%2C4%2C52%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.74%2C3.7e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold557 SAMTools SNP 255237 255237 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.11%2C0.059%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold557 SAMTools SNP 256695 256695 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.17%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold557 SAMTools SNP 257141 257141 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 261276 261276 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C118:99 scaffold557 SAMTools SNP 261279 261279 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.16%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold557 SAMTools SNP 261305 261305 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold557 SAMTools SNP 261310 261310 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold557 SAMTools SNP 263629 263629 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold557 SAMTools SNP 269882 269882 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.29%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold557 SAMTools SNP 269895 269895 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold557 SAMTools SNP 269908 269908 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold557 SAMTools SNP 270217 270217 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C12%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold557 SAMTools SNP 270400 270400 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.021%2C0.00069%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold557 SAMTools SNP 270404 270404 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C1%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.36%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold557 SAMTools SNP 270573 270573 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C63%2C0:99 scaffold557 SAMTools SNP 274600 274600 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold557 SAMTools SNP 274608 274608 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold557 SAMTools SNP 276432 276432 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C23%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0086%2C1.3e-08%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C168:76 scaffold557 SAMTools SNP 276531 276531 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C39%2C0:75 scaffold557 SAMTools SNP 276630 276630 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C71%2C9%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.54%2C7.1e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold557 SAMTools SNP 276793 276793 17.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold557 SAMTools SNP 284321 284321 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold557 SAMTools SNP 287087 287087 72.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C18%2C0:33 scaffold557 SAMTools SNP 287312 287312 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold557 SAMTools SNP 287345 287345 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C214:99 scaffold557 SAMTools SNP 290592 290592 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold557 SAMTools SNP 291300 291300 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold557 SAMTools SNP 293445 293445 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 294805 294805 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 300246 300246 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 300260 300260 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C138:51 scaffold557 SAMTools SNP 300954 300954 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold557 SAMTools SNP 302554 302554 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold557 SAMTools SNP 303629 303629 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold557 SAMTools SNP 303685 303685 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold557 SAMTools SNP 305491 305491 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C221:99 scaffold557 SAMTools SNP 305706 305706 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C190:99 scaffold557 SAMTools SNP 305726 305726 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold557 SAMTools SNP 305756 305756 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold557 SAMTools SNP 305942 305942 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold557 SAMTools SNP 310692 310692 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 310693 310693 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 318593 318593 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold557 SAMTools SNP 318633 318633 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 318795 318795 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.059%2C0.3%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold557 SAMTools SNP 318800 318800 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 319881 319881 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold557 SAMTools SNP 319892 319892 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold557 SAMTools SNP 320108 320108 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold557 SAMTools SNP 320135 320135 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 321624 321624 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold557 SAMTools SNP 324570 324570 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold557 SAMTools SNP 324616 324616 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold557 SAMTools SNP 324668 324668 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C197:99 scaffold557 SAMTools SNP 324683 324683 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C0.44%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold557 SAMTools SNP 324686 324686 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold557 SAMTools SNP 324814 324814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold557 SAMTools SNP 324960 324960 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold557 SAMTools SNP 325004 325004 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold557 SAMTools SNP 331677 331677 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold557 SAMTools SNP 347580 347580 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 347595 347595 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold557 SAMTools SNP 347882 347882 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.28%2C6.6e-05%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold557 SAMTools SNP 347912 347912 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.072%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C207:41 scaffold557 SAMTools SNP 349787 349787 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold557 SAMTools SNP 350719 350719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold557 SAMTools SNP 351900 351900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 364594 364594 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C1%2C24%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.64%2C4.7e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold557 SAMTools SNP 364612 364612 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C45%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C157%2C0:99 scaffold557 SAMTools SNP 364979 364979 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold557 SAMTools SNP 365087 365087 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold557 SAMTools SNP 365123 365123 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold557 SAMTools SNP 365748 365748 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.37%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold557 SAMTools SNP 365978 365978 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.53%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold557 SAMTools SNP 366049 366049 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold557 SAMTools SNP 366076 366076 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.5%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold557 SAMTools SNP 366078 366078 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold557 SAMTools SNP 366556 366556 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold557 SAMTools SNP 366835 366835 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold557 SAMTools SNP 366869 366869 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C8%2C1%2C14%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.8e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold557 SAMTools SNP 367119 367119 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C83%2C0%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold557 SAMTools SNP 367133 367133 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C64%2C1%2C11%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold557 SAMTools SNP 367316 367316 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.2%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold557 SAMTools SNP 367887 367887 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C2%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 368216 368216 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C223:99 scaffold557 SAMTools SNP 368232 368232 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C185:99 scaffold557 SAMTools SNP 368738 368738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold557 SAMTools SNP 368864 368864 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C3.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C77:79 scaffold557 SAMTools SNP 407337 407337 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 408310 408310 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C254:94 scaffold557 SAMTools SNP 408344 408344 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold557 SAMTools SNP 408388 408388 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.16%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold557 SAMTools SNP 409274 409274 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C27%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 410323 410323 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C39%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 411565 411565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C51%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 411581 411581 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C49%2C1%2C18%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.67%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold557 SAMTools SNP 411639 411639 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-06%2C1%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 412008 412008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-06%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 412025 412025 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-128%3BPV4%3D1%2C0.4%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C101%2C0:99 scaffold557 SAMTools SNP 412077 412077 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C2%2C9%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.59%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold557 SAMTools SNP 412101 412101 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C1%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold557 SAMTools SNP 412419 412419 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 412947 412947 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C2%2C71%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 413351 413351 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C53%2C45%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 413735 413735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C39%2C23%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 413792 413792 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.25%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold557 SAMTools SNP 415042 415042 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold557 SAMTools SNP 415496 415496 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 415519 415519 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.26%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C230:64 scaffold557 SAMTools SNP 415615 415615 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 416149 416149 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold557 SAMTools SNP 416179 416179 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold557 SAMTools SNP 416308 416308 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 416703 416703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold557 SAMTools SNP 416723 416723 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold557 SAMTools SNP 416894 416894 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold557 SAMTools SNP 422260 422260 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C12%2C40%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C0.04%2C0.21%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 425151 425151 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C365%2C225%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 425169 425169 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D632%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C327%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 425241 425241 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold557 SAMTools SNP 434021 434021 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D999%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C762%2C209%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 435498 435498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C78%2C83%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.23%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold557 SAMTools SNP 435501 435501 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C83%2C16%2C14%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.69%2C1%2C1%2C2.4e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold557 SAMTools SNP 437039 437039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D799%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D476%2C78%2C220%2C25%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.14%2C0.047%2C1.7e-13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 437306 437306 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D926%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D113%2C596%2C2%2C215%3BMQ%3D46%3BFQ%3D6.99%3BPV4%3D6.1e-12%2C5.5e-06%2C4.1e-24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold557 SAMTools SNP 441323 441323 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C195:60 scaffold557 SAMTools SNP 443895 443895 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D40%3BFQ%3D6.99%3BPV4%3D0.061%2C1%2C0.021%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C200:33 scaffold557 SAMTools SNP 443907 443907 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C5%2C3%3BMQ%3D27%3BFQ%3D11.3%3BPV4%3D0.044%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C235:40 scaffold557 SAMTools SNP 444879 444879 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C10%2C0%3BMQ%3D35%3BFQ%3D50%3BPV4%3D0.28%2C1%2C0.073%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold557 SAMTools SNP 444884 444884 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C14%2C40%3BMQ%3D23%3BFQ%3D36%3BPV4%3D1.6e-06%2C0.017%2C2.4e-07%2C9e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold557 SAMTools SNP 445686 445686 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C5%3BMQ%3D40%3BFQ%3D53%3BPV4%3D0.24%2C1%2C0.0094%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C187:83 scaffold557 SAMTools SNP 445722 445722 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C262%2C11%3BMQ%3D15%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 446599 446599 79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C11%2C158%2C1%3BMQ%3D18%3BFQ%3D82%3BPV4%3D7.6e-06%2C0.022%2C0.00012%2C8.6e-91;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C244:99 scaffold557 SAMTools SNP 446602 446602 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C26%2C109%2C0%3BMQ%3D19%3BFQ%3D116%3BPV4%3D2e-11%2C5.2e-08%2C0.013%2C7.8e-41;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold557 SAMTools SNP 446640 446640 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold557 SAMTools SNP 447653 447653 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold557 SAMTools SNP 447654 447654 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold557 SAMTools SNP 447678 447678 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold557 SAMTools SNP 447679 447679 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold557 SAMTools SNP 447991 447991 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C9%2C0%3BMQ%3D31%3BFQ%3D23%3BPV4%3D1%2C0.42%2C0.3%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C50:53 scaffold557 SAMTools SNP 448148 448148 70 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C84%2C0:99 scaffold557 SAMTools SNP 448401 448401 21.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold557 SAMTools SNP 448658 448658 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C3%2C11%2C25%3BMQ%3D37%3BFQ%3D-12.3%3BPV4%3D0.55%2C0.37%2C0.05%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C15:18 scaffold557 SAMTools SNP 449014 449014 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C163%2C8%2C38%3BMQ%3D31%3BFQ%3D57%3BPV4%3D1%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C252:87 scaffold557 SAMTools SNP 449453 449453 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold557 SAMTools SNP 449554 449554 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold557 SAMTools SNP 449663 449663 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C27%2C0:47 scaffold557 SAMTools SNP 449672 449672 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C30%2C0:57 scaffold557 SAMTools SNP 449853 449853 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D460%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C152%2C115%2C125%3BMQ%3D34%3BFQ%3D225%3BPV4%3D0.0002%2C1%2C0.21%2C6.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 451188 451188 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D689%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D452%2C32%2C175%2C8%3BMQ%3D44%3BFQ%3D90%3BPV4%3D0.36%2C1%2C5.6e-09%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold557 SAMTools SNP 451436 451436 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C60%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold557 SAMTools SNP 451465 451465 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D907%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D26%2C0%2C815%2C66%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.25%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 451744 451744 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1152%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1052%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 451771 451771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D537%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C482%2C8%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 452140 452140 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5221%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C3814%2C1215%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.43%2C0.4%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 456586 456586 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold557 SAMTools SNP 462216 462216 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.32%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold557 SAMTools SNP 463735 463735 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C11%2C32%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.47%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold557 SAMTools SNP 464506 464506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold557 SAMTools SNP 464606 464606 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C23:26 scaffold557 SAMTools SNP 469279 469279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C24%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold557 SAMTools SNP 469483 469483 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C136%2C223%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 471387 471387 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C267%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold557 SAMTools SNP 474514 474514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 475238 475238 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold557 SAMTools SNP 475691 475691 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C8%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C215:99 scaffold557 SAMTools SNP 476088 476088 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C10%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 476249 476249 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C54%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 476456 476456 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C10%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.19%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold557 SAMTools SNP 476646 476646 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.3%2C0.39%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold557 SAMTools SNP 477103 477103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.043%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold557 SAMTools SNP 477223 477223 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold557 SAMTools SNP 482405 482405 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold557 SAMTools SNP 483592 483592 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold557 SAMTools SNP 483604 483604 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold557 SAMTools SNP 483998 483998 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 484418 484418 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold557 SAMTools SNP 486506 486506 75.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold557 SAMTools SNP 486743 486743 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold557 SAMTools SNP 488690 488690 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold557 SAMTools SNP 501924 501924 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C8%3BMQ%3D48%3BFQ%3D51%3BPV4%3D1%2C0.00021%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C138:81 scaffold557 SAMTools SNP 514152 514152 52.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold557 SAMTools SNP 525502 525502 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold559 SAMTools SNP 73 73 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold559 SAMTools SNP 131 131 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold559 SAMTools SNP 146 146 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C0%2C7%3BMQ%3D49%3BFQ%3D30%3BPV4%3D2.3e-06%2C1.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold559 SAMTools SNP 903 903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C11%3BMQ%3D47%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold559 SAMTools SNP 1407 1407 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C55%3BMQ%3D14%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C226%2C0:99 scaffold559 SAMTools SNP 34918 34918 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold559 SAMTools SNP 37278 37278 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold559 SAMTools SNP 37570 37570 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C103:31 scaffold559 SAMTools SNP 37608 37608 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold559 SAMTools SNP 37639 37639 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.074%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold559 SAMTools SNP 38260 38260 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold559 SAMTools SNP 38502 38502 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold559 SAMTools SNP 38696 38696 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold559 SAMTools SNP 38833 38833 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold560 SAMTools SNP 2357 2357 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 2387 2387 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold560 SAMTools SNP 3027 3027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold560 SAMTools SNP 3123 3123 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C7%3BMQ%3D42%3BFQ%3D223%3BPV4%3D0.71%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold560 SAMTools SNP 3587 3587 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C20%2C6%3BMQ%3D46%3BFQ%3D196%3BPV4%3D1%2C0.2%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold560 SAMTools SNP 3614 3614 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C17%2C9%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.074%2C1%2C0.19%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 3883 3883 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold560 SAMTools SNP 9093 9093 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 9094 9094 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 9212 9212 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C183:31 scaffold560 SAMTools SNP 9587 9587 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold560 SAMTools SNP 10159 10159 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold560 SAMTools SNP 10213 10213 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold560 SAMTools SNP 10581 10581 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.35%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C248:99 scaffold560 SAMTools SNP 10655 10655 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 11220 11220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.00046%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 11247 11247 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold560 SAMTools SNP 11248 11248 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.29%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold560 SAMTools SNP 11439 11439 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold560 SAMTools SNP 11774 11774 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.062%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C166:99 scaffold560 SAMTools SNP 11780 11780 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.45%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C176:99 scaffold560 SAMTools SNP 11807 11807 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold560 SAMTools SNP 12171 12171 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold560 SAMTools SNP 12180 12180 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 12393 12393 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold560 SAMTools SNP 12420 12420 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C205:99 scaffold560 SAMTools SNP 12545 12545 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.041%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold560 SAMTools SNP 12590 12590 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold560 SAMTools SNP 13072 13072 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.005%2C2.7e-08%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold560 SAMTools SNP 13105 13105 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C6.8e-06%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 13621 13621 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C232:65 scaffold560 SAMTools SNP 13639 13639 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.018%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C104:39 scaffold560 SAMTools SNP 13717 13717 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold560 SAMTools SNP 14429 14429 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold560 SAMTools SNP 14826 14826 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold560 SAMTools SNP 16309 16309 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold560 SAMTools SNP 16650 16650 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold560 SAMTools SNP 17090 17090 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold560 SAMTools SNP 17102 17102 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.19%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold560 SAMTools SNP 27122 27122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 27351 27351 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0032%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold560 SAMTools SNP 27358 27358 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C245:99 scaffold560 SAMTools SNP 27405 27405 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.071%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold560 SAMTools SNP 27525 27525 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold560 SAMTools SNP 47106 47106 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D24%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.5e-52%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C247:31 scaffold560 SAMTools SNP 47581 47581 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold560 SAMTools SNP 47942 47942 37.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold560 SAMTools SNP 48205 48205 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C110%2C0%2C115%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.24%2C5.9e-153%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold560 SAMTools SNP 48452 48452 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C62%2C42%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.41%2C8.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 48585 48585 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C9%2C45%2C62%3BMQ%3D50%3BFQ%3D33%3BPV4%3D4.5e-06%2C2e-138%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold560 SAMTools SNP 48702 48702 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C36%2C2%2C35%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.68%2C1.7e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold560 SAMTools SNP 49642 49642 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold560 SAMTools SNP 51255 51255 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.021%2C0.00048%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C229:58 scaffold560 SAMTools SNP 51454 51454 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C16%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.16%2C9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold560 SAMTools SNP 51580 51580 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold560 SAMTools SNP 51683 51683 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C36%2C0:69 scaffold560 SAMTools SNP 52102 52102 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C2.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold560 SAMTools SNP 52420 52420 20.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold560 SAMTools SNP 52479 52479 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold560 SAMTools SNP 52910 52910 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold560 SAMTools SNP 53157 53157 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C48%2C0:93 scaffold560 SAMTools SNP 53248 53248 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.36%2C2.4e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C189:68 scaffold560 SAMTools SNP 53716 53716 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold560 SAMTools SNP 53749 53749 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C24%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.16%2C4.2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold560 SAMTools SNP 53851 53851 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold560 SAMTools SNP 53876 53876 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C4%2C19%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.67%2C5.8e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold560 SAMTools SNP 54364 54364 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C54%2C0:99 scaffold560 SAMTools SNP 62440 62440 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold560 SAMTools SNP 117246 117246 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold560 SAMTools SNP 125794 125794 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D195%2C1%2C121%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C7.6e-146%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold560 SAMTools SNP 127983 127983 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C7%2C54%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.59%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold560 SAMTools SNP 141548 141548 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C11%2C0%3BMQ%3D40%3BFQ%3D10.4%3BPV4%3D0.018%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C68:39 scaffold560 SAMTools SNP 144976 144976 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold560 SAMTools SNP 145262 145262 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.28%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold560 SAMTools SNP 145945 145945 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold560 SAMTools SNP 146261 146261 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D25%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.015%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold560 SAMTools SNP 146839 146839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C50%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 146848 146848 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C49%2C21%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 160452 160452 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C36%2C0:69 scaffold560 SAMTools SNP 161204 161204 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C60%2C0:99 scaffold560 SAMTools SNP 162027 162027 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold560 SAMTools SNP 162054 162054 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold560 SAMTools SNP 162077 162077 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold560 SAMTools SNP 162078 162078 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold560 SAMTools SNP 162614 162614 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold560 SAMTools SNP 162620 162620 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold560 SAMTools SNP 162632 162632 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.66%2C0.42%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C3%2C255:63 scaffold560 SAMTools SNP 162668 162668 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C28%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold560 SAMTools SNP 163122 163122 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 163720 163720 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C1%2C17%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.21%2C2.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold560 SAMTools SNP 163753 163753 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C54%2C0:99 scaffold560 SAMTools SNP 163762 163762 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold560 SAMTools SNP 165030 165030 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold560 SAMTools SNP 165066 165066 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 165075 165075 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold560 SAMTools SNP 165488 165488 14.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold560 SAMTools SNP 165572 165572 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D45.9%3BPV4%3D0.1%2C0.00047%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C77:76 scaffold560 SAMTools SNP 166400 166400 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold560 SAMTools SNP 166493 166493 54.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold560 SAMTools SNP 166532 166532 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold560 SAMTools SNP 166540 166540 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C44%2C0%2C12%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.012%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold560 SAMTools SNP 173933 173933 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C4%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 173959 173959 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.14%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 174490 174490 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C5%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 184599 184599 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C15%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C2.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold560 SAMTools SNP 184644 184644 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 184899 184899 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C4.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C12:15 scaffold560 SAMTools SNP 184974 184974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 186458 186458 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C17%2C21%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold560 SAMTools SNP 186510 186510 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D350%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C200%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 188364 188364 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D859%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D376%2C165%2C224%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.3e-17%2C0.43%2C1%2C8.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 188367 188367 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D887%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D375%2C179%2C225%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-18%2C1%2C1%2C3.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 188370 188370 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D901%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D242%2C96%2C346%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 194217 194217 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C43%2C5%2C37%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.73%2C0.00018%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 195660 195660 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C80%2C14%3BMQ%3D17%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold560 SAMTools SNP 196191 196191 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C81%2C45%3BMQ%3D29%3BFQ%3D-282%3BPV4%3D0.13%2C1%2C0.021%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold560 SAMTools SNP 197567 197567 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C104%2C149%2C69%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.0009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 197626 197626 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C97%2C95%2C59%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.2%2C2.3e-07%2C0.00094%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 197999 197999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C172%2C42%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C0.021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 198038 198038 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C114%2C20%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 198050 198050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C131%2C58%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C0.00037%2C1%2C2.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 198261 198261 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D818%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D344%2C84%2C330%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.49%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 198777 198777 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D566%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 199732 199732 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D428%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C139%2C79%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 199759 199759 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C92%2C65%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 199789 199789 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C184%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 200133 200133 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C147%2C6%2C60%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.00052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold560 SAMTools SNP 200283 200283 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold560 SAMTools SNP 200918 200918 65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold560 SAMTools SNP 201039 201039 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold560 SAMTools SNP 206069 206069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C185%2C39%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold560 SAMTools SNP 213183 213183 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.032%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold560 SAMTools SNP 213738 213738 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold560 SAMTools SNP 214327 214327 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 14047 14047 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold562 SAMTools SNP 16990 16990 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold562 SAMTools SNP 25366 25366 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold562 SAMTools SNP 52996 52996 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 74693 74693 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.23%3BPV4%3D1%2C0.092%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C36:39 scaffold562 SAMTools SNP 74709 74709 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold562 SAMTools SNP 74745 74745 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold562 SAMTools SNP 78083 78083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C32%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold562 SAMTools SNP 82854 82854 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold562 SAMTools SNP 82923 82923 55.8 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold562 SAMTools SNP 85613 85613 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold562 SAMTools SNP 87782 87782 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold562 SAMTools SNP 88057 88057 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 88321 88321 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold562 SAMTools SNP 89627 89627 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold562 SAMTools SNP 91611 91611 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold562 SAMTools SNP 92454 92454 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C151%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold562 SAMTools SNP 92810 92810 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold562 SAMTools SNP 96851 96851 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold562 SAMTools SNP 97024 97024 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 103031 103031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C44%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold562 SAMTools SNP 103605 103605 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C22%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold562 SAMTools SNP 103653 103653 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold562 SAMTools SNP 104502 104502 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C8%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D9.2e-07%2C2.6e-11%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold562 SAMTools SNP 110376 110376 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold562 SAMTools SNP 110400 110400 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C27%2C0:51 scaffold562 SAMTools SNP 110482 110482 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold562 SAMTools SNP 111382 111382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold562 SAMTools SNP 111566 111566 217 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5%2C230%2C0%2C227:81 scaffold562 SAMTools SNP 112130 112130 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold562 SAMTools SNP 112178 112178 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold562 SAMTools SNP 112437 112437 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.14%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C169:47 scaffold562 SAMTools SNP 113048 113048 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C3%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold562 SAMTools SNP 113535 113535 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 113540 113540 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 116035 116035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C66%2C3%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold562 SAMTools SNP 116198 116198 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C3%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold562 SAMTools SNP 116219 116219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold562 SAMTools SNP 116579 116579 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold562 SAMTools SNP 116627 116627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold562 SAMTools SNP 116702 116702 60.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold562 SAMTools SNP 116810 116810 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D21%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C51%2C0:74 scaffold562 SAMTools SNP 121050 121050 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold562 SAMTools SNP 134069 134069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 134114 134114 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 134735 134735 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.011%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold562 SAMTools SNP 135076 135076 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 135840 135840 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold562 SAMTools SNP 210981 210981 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold562 SAMTools SNP 214570 214570 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold562 SAMTools SNP 214616 214616 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold562 SAMTools SNP 214643 214643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold562 SAMTools SNP 215620 215620 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold562 SAMTools SNP 215623 215623 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.37%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold562 SAMTools SNP 216180 216180 102 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C121%2C145%2C0%2C136:21 scaffold562 SAMTools SNP 216306 216306 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 216313 216313 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold562 SAMTools SNP 216656 216656 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C78%2C0:99 scaffold562 SAMTools SNP 216660 216660 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold562 SAMTools SNP 217044 217044 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 217079 217079 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 217399 217399 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 217409 217409 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 217521 217521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold562 SAMTools SNP 218000 218000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 218647 218647 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C115%2C0%2C56%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.26%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold562 SAMTools SNP 218661 218661 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C9.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C199:99 scaffold562 SAMTools SNP 218680 218680 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold562 SAMTools SNP 218681 218681 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold562 SAMTools SNP 219776 219776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold562 SAMTools SNP 219785 219785 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold562 SAMTools SNP 219803 219803 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 219828 219828 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.016%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold562 SAMTools SNP 223520 223520 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C11%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C3.5e-28%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C165:55 scaffold562 SAMTools SNP 223698 223698 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold562 SAMTools SNP 224004 224004 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 224016 224016 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold562 SAMTools SNP 224406 224406 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold562 SAMTools SNP 227294 227294 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 229634 229634 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold562 SAMTools SNP 229640 229640 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold562 SAMTools SNP 230516 230516 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 230768 230768 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold562 SAMTools SNP 230797 230797 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 241125 241125 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold562 SAMTools SNP 244354 244354 13.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold562 SAMTools SNP 244531 244531 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold562 SAMTools SNP 245079 245079 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold562 SAMTools SNP 245103 245103 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C237:63 scaffold562 SAMTools SNP 245232 245232 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C26:29 scaffold562 SAMTools SNP 245490 245490 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold562 SAMTools SNP 245532 245532 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C2%3BMQ%3D48%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold562 SAMTools SNP 255602 255602 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold562 SAMTools SNP 259395 259395 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 259427 259427 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 260995 260995 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold562 SAMTools SNP 261279 261279 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold562 SAMTools SNP 261281 261281 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 261481 261481 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold562 SAMTools SNP 261766 261766 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.59%2C0.32%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold562 SAMTools SNP 261789 261789 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold562 SAMTools SNP 261814 261814 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C75%2C0:99 scaffold562 SAMTools SNP 280594 280594 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D37%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C73:76 scaffold562 SAMTools SNP 280797 280797 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C77:40 scaffold562 SAMTools SNP 281316 281316 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C1%2C21%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C4.3e-14%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold562 SAMTools SNP 281595 281595 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C10%2C27%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.03%2C2.1e-14%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold562 SAMTools SNP 281784 281784 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C0%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 281831 281831 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold562 SAMTools SNP 288684 288684 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold562 SAMTools SNP 288836 288836 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold562 SAMTools SNP 297428 297428 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold562 SAMTools SNP 297973 297973 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold562 SAMTools SNP 297986 297986 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold562 SAMTools SNP 298016 298016 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 298633 298633 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold562 SAMTools SNP 317019 317019 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 317883 317883 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 318463 318463 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 318710 318710 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 319846 319846 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.1%3BPV4%3D0.25%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C38:41 scaffold562 SAMTools SNP 320287 320287 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold562 SAMTools SNP 320625 320625 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 320649 320649 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 320676 320676 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold562 SAMTools SNP 320712 320712 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D29%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C220:36 scaffold562 SAMTools SNP 321119 321119 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C12%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.32%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold562 SAMTools SNP 321144 321144 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold562 SAMTools SNP 321168 321168 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C36%2C0%2C11%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold562 SAMTools SNP 321634 321634 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C33%2C1%2C12%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.26%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold562 SAMTools SNP 322136 322136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 322198 322198 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 322440 322440 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 322643 322643 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold562 SAMTools SNP 322676 322676 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold562 SAMTools SNP 322697 322697 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00047%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold562 SAMTools SNP 322709 322709 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold562 SAMTools SNP 322754 322754 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.14%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold562 SAMTools SNP 322904 322904 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.31%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold562 SAMTools SNP 322938 322938 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold562 SAMTools SNP 322947 322947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold562 SAMTools SNP 323025 323025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C34%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold562 SAMTools SNP 323034 323034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold562 SAMTools SNP 323489 323489 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C30%2C0:57 scaffold562 SAMTools SNP 326397 326397 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold562 SAMTools SNP 326412 326412 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold562 SAMTools SNP 326856 326856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold562 SAMTools SNP 326862 326862 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C15%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold562 SAMTools SNP 327412 327412 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold562 SAMTools SNP 327769 327769 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C21%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold562 SAMTools SNP 328611 328611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C29%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 328826 328826 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C21%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold562 SAMTools SNP 328868 328868 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.014%2C0.0028%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold562 SAMTools SNP 329148 329148 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold562 SAMTools SNP 329152 329152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C17%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold562 SAMTools SNP 329362 329362 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C178:99 scaffold562 SAMTools SNP 330097 330097 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold562 SAMTools SNP 331213 331213 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 331243 331243 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold562 SAMTools SNP 331418 331418 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold562 SAMTools SNP 331458 331458 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 331526 331526 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 331534 331534 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 331929 331929 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold562 SAMTools SNP 332103 332103 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 332472 332472 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold562 SAMTools SNP 332517 332517 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold562 SAMTools SNP 333384 333384 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C249:99 scaffold562 SAMTools SNP 333431 333431 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold562 SAMTools SNP 335261 335261 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.58%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold562 SAMTools SNP 335264 335264 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C149:99 scaffold562 SAMTools SNP 335465 335465 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 335919 335919 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.56%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C213:99 scaffold562 SAMTools SNP 335934 335934 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C0.36%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold562 SAMTools SNP 335944 335944 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.44%2C0.015%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold562 SAMTools SNP 336286 336286 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.023%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C244:99 scaffold562 SAMTools SNP 336343 336343 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C21%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.15%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold562 SAMTools SNP 336543 336543 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold562 SAMTools SNP 336549 336549 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold562 SAMTools SNP 336579 336579 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.073%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold562 SAMTools SNP 336618 336618 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C6%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0088%2C0.014%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold562 SAMTools SNP 337890 337890 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.029%2C1%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C13%2C228:99 scaffold562 SAMTools SNP 344698 344698 33.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold562 SAMTools SNP 346404 346404 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D1%2C1.2e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C88%2C0:99 scaffold562 SAMTools SNP 346593 346593 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.11%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C223:57 scaffold562 SAMTools SNP 346601 346601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold562 SAMTools SNP 350757 350757 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C24%2C0:45 scaffold562 SAMTools SNP 350942 350942 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C2.8e-11%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C190:49 scaffold562 SAMTools SNP 350966 350966 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold562 SAMTools SNP 365604 365604 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.3%2C0.15%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold562 SAMTools SNP 365645 365645 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00085%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold562 SAMTools SNP 365652 365652 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0011%2C1%2C1%2C7.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold562 SAMTools SNP 369157 369157 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold562 SAMTools SNP 380624 380624 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold562 SAMTools SNP 395782 395782 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold562 SAMTools SNP 397775 397775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 397974 397974 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C5%2C14%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C3.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold562 SAMTools SNP 398267 398267 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C20%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold562 SAMTools SNP 398291 398291 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C29%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.08%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold562 SAMTools SNP 402824 402824 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold562 SAMTools SNP 402839 402839 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold562 SAMTools SNP 404053 404053 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold562 SAMTools SNP 408985 408985 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold562 SAMTools SNP 408988 408988 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold562 SAMTools SNP 409692 409692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold562 SAMTools SNP 412435 412435 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.13%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C127:99 scaffold562 SAMTools SNP 412438 412438 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.16%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold562 SAMTools SNP 412926 412926 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.049%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 413552 413552 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.036%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold562 SAMTools SNP 413561 413561 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C34%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold562 SAMTools SNP 413584 413584 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold562 SAMTools SNP 415526 415526 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold563 SAMTools SNP 37693 37693 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 37707 37707 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 38168 38168 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold563 SAMTools SNP 45545 45545 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 45567 45567 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 54640 54640 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold563 SAMTools SNP 56615 56615 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold563 SAMTools SNP 83992 83992 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold563 SAMTools SNP 84012 84012 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold563 SAMTools SNP 85344 85344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold563 SAMTools SNP 89866 89866 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 91176 91176 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C42%2C1%2C13%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold563 SAMTools SNP 91206 91206 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C40%2C1%2C13%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.053%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold563 SAMTools SNP 91220 91220 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C8%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 91233 91233 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold563 SAMTools SNP 91248 91248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold563 SAMTools SNP 92618 92618 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C16%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold563 SAMTools SNP 92803 92803 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.035%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold563 SAMTools SNP 92874 92874 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold563 SAMTools SNP 93476 93476 54.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold563 SAMTools SNP 98520 98520 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 98532 98532 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C0.23%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold563 SAMTools SNP 98535 98535 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold563 SAMTools SNP 99331 99331 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold563 SAMTools SNP 99670 99670 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.65%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold563 SAMTools SNP 99688 99688 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C9%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold563 SAMTools SNP 99727 99727 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold563 SAMTools SNP 100483 100483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.24%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold563 SAMTools SNP 100524 100524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold563 SAMTools SNP 100531 100531 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.12%2C0.0097%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold563 SAMTools SNP 105643 105643 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 105652 105652 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 106035 106035 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold563 SAMTools SNP 106038 106038 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 106113 106113 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C78%2C0:99 scaffold563 SAMTools SNP 106191 106191 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C0.015%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C23:26 scaffold563 SAMTools SNP 108386 108386 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold563 SAMTools SNP 109098 109098 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold563 SAMTools SNP 112928 112928 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold563 SAMTools SNP 113131 113131 15.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold563 SAMTools SNP 113278 113278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 113703 113703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C17%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold563 SAMTools SNP 113715 113715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold563 SAMTools SNP 113760 113760 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.004%2C1.9e-09%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold563 SAMTools SNP 114193 114193 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C26%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.63%2C7.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold563 SAMTools SNP 114211 114211 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C4%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold563 SAMTools SNP 114524 114524 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold563 SAMTools SNP 114596 114596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C29%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 114915 114915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C34%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold563 SAMTools SNP 114984 114984 144 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C61%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C235%2C0%2C169%2C209%2C166:99 scaffold563 SAMTools SNP 115011 115011 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C120%2C0:99 scaffold563 SAMTools SNP 115074 115074 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C48%2C0:93 scaffold563 SAMTools SNP 116017 116017 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C32%2C4%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.025%2C6.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold563 SAMTools SNP 116023 116023 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 116175 116175 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C2%2C42%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.5%2C4.9e-26%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold563 SAMTools SNP 116194 116194 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C3%2C28%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.55%2C4.5e-12%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold563 SAMTools SNP 116242 116242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C31%2C27%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 117069 117069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C147%2C55%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 117351 117351 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C40%2C10%2C17%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.81%2C1.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold563 SAMTools SNP 117564 117564 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C116%2C4%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 119083 119083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C4%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 119107 119107 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.61%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold563 SAMTools SNP 119187 119187 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold563 SAMTools SNP 133625 133625 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C129%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 133664 133664 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C69%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold563 SAMTools SNP 133694 133694 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold563 SAMTools SNP 133709 133709 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.007%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold563 SAMTools SNP 142207 142207 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold563 SAMTools SNP 164186 164186 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold563 SAMTools SNP 172316 172316 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 176824 176824 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C114%2C0:99 scaffold563 SAMTools SNP 177193 177193 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 178335 178335 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold563 SAMTools SNP 178574 178574 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold563 SAMTools SNP 178625 178625 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 178689 178689 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 181718 181718 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold563 SAMTools SNP 214881 214881 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C24%2C0:39 scaffold563 SAMTools SNP 215727 215727 52.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D442%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.18%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C0:3 scaffold563 SAMTools SNP 221193 221193 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C195:53 scaffold563 SAMTools SNP 221201 221201 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C21%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C2.1e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C54:57 scaffold563 SAMTools SNP 221894 221894 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C11%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold563 SAMTools SNP 221930 221930 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 221937 221937 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold563 SAMTools SNP 237922 237922 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1547%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C899%2C3%2C603%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 238272 238272 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1294%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1291%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 238365 238365 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold563 SAMTools SNP 245715 245715 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C26%2C51%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold563 SAMTools SNP 245733 245733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C31%2C57%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D3.6e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold563 SAMTools SNP 247354 247354 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C50%2C43%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 248112 248112 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold563 SAMTools SNP 248186 248186 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold563 SAMTools SNP 249749 249749 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C43%2C36%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 250033 250033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C39%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 250153 250153 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C30%2C108%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 250226 250226 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold563 SAMTools SNP 252307 252307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 253022 253022 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C68%2C0%2C28%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.088%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold563 SAMTools SNP 253051 253051 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold563 SAMTools SNP 253319 253319 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold563 SAMTools SNP 253329 253329 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold563 SAMTools SNP 254032 254032 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.0088%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold563 SAMTools SNP 256094 256094 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold563 SAMTools SNP 256193 256193 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold563 SAMTools SNP 256814 256814 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C167:99 scaffold563 SAMTools SNP 256872 256872 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.057%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C217:99 scaffold563 SAMTools SNP 257122 257122 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold563 SAMTools SNP 257140 257140 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold563 SAMTools SNP 257189 257189 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold563 SAMTools SNP 257240 257240 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold563 SAMTools SNP 257248 257248 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold563 SAMTools SNP 257687 257687 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold563 SAMTools SNP 257721 257721 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 264406 264406 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold563 SAMTools SNP 266039 266039 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C1%2C41%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold563 SAMTools SNP 270344 270344 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold563 SAMTools SNP 270450 270450 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold563 SAMTools SNP 271008 271008 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C149%2C44%2C160%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.013%2C8.8e-292%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold563 SAMTools SNP 271194 271194 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C109%2C58%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 276717 276717 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C12%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 277016 277016 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C20%2C1%2C10%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.00022%2C1%2C1%2C1.7e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold563 SAMTools SNP 277112 277112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C67%2C17%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 279018 279018 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C144%2C0:99 scaffold563 SAMTools SNP 279903 279903 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C55%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.14%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 281992 281992 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.00059%2C0.0027%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C245:99 scaffold563 SAMTools SNP 282006 282006 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold563 SAMTools SNP 282075 282075 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C0%2C39%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold563 SAMTools SNP 284205 284205 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold563 SAMTools SNP 284213 284213 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold563 SAMTools SNP 285183 285183 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 299591 299591 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold563 SAMTools SNP 302747 302747 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold563 SAMTools SNP 303790 303790 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold563 SAMTools SNP 316005 316005 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold563 SAMTools SNP 319449 319449 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.001%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 319729 319729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 331702 331702 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold563 SAMTools SNP 333591 333591 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold563 SAMTools SNP 337112 337112 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.035%2C0.00075%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C229:99 scaffold563 SAMTools SNP 337402 337402 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold563 SAMTools SNP 337412 337412 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold563 SAMTools SNP 337881 337881 54.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C12%2C0:21 scaffold563 SAMTools SNP 337885 337885 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold563 SAMTools SNP 337931 337931 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold563 SAMTools SNP 338626 338626 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold563 SAMTools SNP 339295 339295 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold563 SAMTools SNP 339312 339312 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold563 SAMTools SNP 339633 339633 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C15%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C126%2C0:99 scaffold563 SAMTools SNP 339682 339682 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D925%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D521%2C0%2C380%2C23%3BMQ%3D50%3BFQ%3D80%3BPV4%3D3.6e-09%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold563 SAMTools SNP 339752 339752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D786%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C422%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 339758 339758 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D751%3BVDB%3D0.0302%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.2%2C0%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C25:28 scaffold563 SAMTools SNP 339914 339914 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C15%3BMQ%3D49%3BFQ%3D100%3BPV4%3D1%2C0.00046%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C228:99 scaffold563 SAMTools SNP 339938 339938 59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C0%2C12%3BMQ%3D49%3BFQ%3D62%3BPV4%3D0.094%2C0.016%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold563 SAMTools SNP 340476 340476 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 345385 345385 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold563 SAMTools SNP 346335 346335 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D991%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C280%2C230%2C268%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 347235 347235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D694%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C250%2C81%2C242%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 351187 351187 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C64%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 352541 352541 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold563 SAMTools SNP 352551 352551 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 352617 352617 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold563 SAMTools SNP 364363 364363 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold563 SAMTools SNP 364672 364672 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 364996 364996 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold563 SAMTools SNP 365542 365542 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold563 SAMTools SNP 366370 366370 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 371777 371777 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold563 SAMTools SNP 371778 371778 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C199:65 scaffold563 SAMTools SNP 371848 371848 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold563 SAMTools SNP 372457 372457 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold563 SAMTools SNP 372992 372992 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C164:99 scaffold563 SAMTools SNP 373010 373010 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold563 SAMTools SNP 373079 373079 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C208:99 scaffold563 SAMTools SNP 373100 373100 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold563 SAMTools SNP 373933 373933 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold563 SAMTools SNP 375003 375003 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold563 SAMTools SNP 375012 375012 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold563 SAMTools SNP 375036 375036 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold563 SAMTools SNP 375060 375060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold563 SAMTools SNP 378842 378842 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold563 SAMTools SNP 378918 378918 29.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold563 SAMTools SNP 384324 384324 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold563 SAMTools SNP 384347 384347 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold563 SAMTools SNP 389303 389303 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.24%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold563 SAMTools SNP 397922 397922 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold563 SAMTools SNP 397925 397925 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold563 SAMTools SNP 397963 397963 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold563 SAMTools SNP 399018 399018 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 399632 399632 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold563 SAMTools SNP 400215 400215 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold563 SAMTools SNP 400933 400933 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold563 SAMTools SNP 402189 402189 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold563 SAMTools SNP 402230 402230 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold563 SAMTools SNP 402278 402278 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold563 SAMTools SNP 402456 402456 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold563 SAMTools SNP 402622 402622 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold563 SAMTools SNP 402999 402999 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold563 SAMTools SNP 403019 403019 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold563 SAMTools SNP 403311 403311 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 403550 403550 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold563 SAMTools SNP 403581 403581 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold563 SAMTools SNP 408618 408618 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold563 SAMTools SNP 408711 408711 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 408754 408754 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.51%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold563 SAMTools SNP 409721 409721 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold563 SAMTools SNP 409781 409781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold563 SAMTools SNP 410122 410122 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 410545 410545 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold563 SAMTools SNP 410563 410563 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold563 SAMTools SNP 410720 410720 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold563 SAMTools SNP 411057 411057 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold563 SAMTools SNP 413005 413005 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 413169 413169 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold563 SAMTools SNP 413478 413478 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C214:99 scaffold563 SAMTools SNP 413508 413508 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold563 SAMTools SNP 414136 414136 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold563 SAMTools SNP 414142 414142 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold563 SAMTools SNP 414579 414579 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold563 SAMTools SNP 417079 417079 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 417275 417275 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold563 SAMTools SNP 417284 417284 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold563 SAMTools SNP 418504 418504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold563 SAMTools SNP 419577 419577 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.23%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C115:99 scaffold563 SAMTools SNP 420041 420041 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold563 SAMTools SNP 420074 420074 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold563 SAMTools SNP 420499 420499 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold563 SAMTools SNP 421135 421135 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C66%2C0:99 scaffold563 SAMTools SNP 421212 421212 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.41%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C153:99 scaffold563 SAMTools SNP 421270 421270 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold563 SAMTools SNP 421464 421464 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C239:99 scaffold563 SAMTools SNP 421620 421620 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 424076 424076 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 429053 429053 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C156%2C13%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.37%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 429090 429090 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C19%2C24%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 430822 430822 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C40%2C19%2C33%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.71%2C6e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold563 SAMTools SNP 431312 431312 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C126:80 scaffold563 SAMTools SNP 433334 433334 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold563 SAMTools SNP 433379 433379 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C3%2C31%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.039%2C2.2e-43%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold563 SAMTools SNP 433469 433469 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 433470 433470 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0064%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 434162 434162 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C37%2C13%2C14%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0036%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold563 SAMTools SNP 434249 434249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C81%2C1%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-10%2C0.45%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 434282 434282 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D299%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C145%2C1%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 434744 434744 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C35%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold563 SAMTools SNP 435047 435047 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C12%2C15%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.28%2C0.042%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold563 SAMTools SNP 435142 435142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C54%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 437199 437199 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold563 SAMTools SNP 440432 440432 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.002%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C167:99 scaffold563 SAMTools SNP 454306 454306 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold563 SAMTools SNP 469800 469800 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.46%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C194:31 scaffold563 SAMTools SNP 470172 470172 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold563 SAMTools SNP 471475 471475 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold563 SAMTools SNP 474229 474229 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold563 SAMTools SNP 474419 474419 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold563 SAMTools SNP 474594 474594 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold563 SAMTools SNP 481894 481894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 511839 511839 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold563 SAMTools SNP 543162 543162 8.65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold563 SAMTools SNP 543629 543629 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold563 SAMTools SNP 563481 563481 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 563539 563539 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 563554 563554 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 566869 566869 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold563 SAMTools SNP 567293 567293 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold563 SAMTools SNP 568514 568514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold563 SAMTools SNP 569008 569008 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold563 SAMTools SNP 569029 569029 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold563 SAMTools SNP 570263 570263 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold563 SAMTools SNP 570403 570403 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold563 SAMTools SNP 570599 570599 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold563 SAMTools SNP 571148 571148 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 571175 571175 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 571217 571217 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 571235 571235 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 572043 572043 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold563 SAMTools SNP 572744 572744 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0048%2C0.21%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold563 SAMTools SNP 574445 574445 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold563 SAMTools SNP 574579 574579 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.1%2C0.22%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold563 SAMTools SNP 574628 574628 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 574942 574942 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold563 SAMTools SNP 574954 574954 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold563 SAMTools SNP 576729 576729 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold563 SAMTools SNP 576783 576783 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold563 SAMTools SNP 576807 576807 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.25%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold563 SAMTools SNP 580672 580672 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.35%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold563 SAMTools SNP 580734 580734 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold563 SAMTools SNP 582722 582722 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C71:74 scaffold563 SAMTools SNP 582725 582725 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C102:99 scaffold563 SAMTools SNP 582779 582779 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold563 SAMTools SNP 583228 583228 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C3%3BMQ%3D46%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C221:99 scaffold563 SAMTools SNP 583229 583229 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C1%3BMQ%3D45%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C224:70 scaffold563 SAMTools SNP 583534 583534 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold563 SAMTools SNP 583831 583831 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C3%2C2%3BMQ%3D48%3BFQ%3D130%3BPV4%3D0.55%2C0.11%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold563 SAMTools SNP 583852 583852 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C14%2C3%3BMQ%3D48%3BFQ%3D118%3BPV4%3D0.00083%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold563 SAMTools SNP 583879 583879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C11%2C3%3BMQ%3D47%3BFQ%3D152%3BPV4%3D0.018%2C0.1%2C0.18%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold563 SAMTools SNP 583895 583895 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold563 SAMTools SNP 583924 583924 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold563 SAMTools SNP 584429 584429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold563 SAMTools SNP 585404 585404 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 585422 585422 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold563 SAMTools SNP 586546 586546 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.54%2C9.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold563 SAMTools SNP 586597 586597 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C2%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 587271 587271 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 587292 587292 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C5%2C42%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 587768 587768 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C71%2C7%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 588001 588001 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D31%2C40%2C0%2C12%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.0028%2C1%2C1%2C9.8e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold563 SAMTools SNP 588036 588036 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-10%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold563 SAMTools SNP 588045 588045 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C6%2C3%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C237:99 scaffold563 SAMTools SNP 588048 588048 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D7.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold563 SAMTools SNP 588084 588084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold563 SAMTools SNP 588339 588339 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold563 SAMTools SNP 588366 588366 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold563 SAMTools SNP 589590 589590 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold563 SAMTools SNP 595339 595339 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 595340 595340 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold563 SAMTools SNP 595345 595345 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold563 SAMTools SNP 595357 595357 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold563 SAMTools SNP 596192 596192 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold563 SAMTools SNP 596716 596716 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.25%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C248:99 scaffold563 SAMTools SNP 596791 596791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold563 SAMTools SNP 599854 599854 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold563 SAMTools SNP 599926 599926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold563 SAMTools SNP 603744 603744 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 603805 603805 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.28%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold563 SAMTools SNP 604163 604163 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold563 SAMTools SNP 604184 604184 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold563 SAMTools SNP 604223 604223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold563 SAMTools SNP 604398 604398 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold563 SAMTools SNP 604431 604431 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.43%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold563 SAMTools SNP 604439 604439 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold563 SAMTools SNP 604967 604967 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold564 SAMTools SNP 37356 37356 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 90059 90059 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold564 SAMTools SNP 90092 90092 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold564 SAMTools SNP 90643 90643 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold564 SAMTools SNP 91257 91257 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 91286 91286 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold564 SAMTools SNP 93761 93761 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold564 SAMTools SNP 93772 93772 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold564 SAMTools SNP 95189 95189 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold564 SAMTools SNP 95374 95374 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C36%2C0:60 scaffold564 SAMTools SNP 108564 108564 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 108576 108576 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold564 SAMTools SNP 108595 108595 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.096%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold564 SAMTools SNP 108600 108600 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold564 SAMTools SNP 108959 108959 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D36.8%3BPV4%3D0.1%2C0.11%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C77:67 scaffold564 SAMTools SNP 108968 108968 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold564 SAMTools SNP 109557 109557 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold564 SAMTools SNP 109563 109563 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold564 SAMTools SNP 109614 109614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold564 SAMTools SNP 109795 109795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold564 SAMTools SNP 109843 109843 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C186:99 scaffold564 SAMTools SNP 109846 109846 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C120:99 scaffold564 SAMTools SNP 109885 109885 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.022%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C217:99 scaffold564 SAMTools SNP 109894 109894 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0034%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C213:99 scaffold564 SAMTools SNP 111120 111120 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.0099%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 111177 111177 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C214:94 scaffold564 SAMTools SNP 112881 112881 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold564 SAMTools SNP 113456 113456 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold564 SAMTools SNP 116661 116661 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold564 SAMTools SNP 116919 116919 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold564 SAMTools SNP 117868 117868 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold564 SAMTools SNP 128223 128223 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 136524 136524 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold564 SAMTools SNP 165251 165251 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold564 SAMTools SNP 165767 165767 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold564 SAMTools SNP 165842 165842 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold564 SAMTools SNP 165917 165917 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold564 SAMTools SNP 165920 165920 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold564 SAMTools SNP 166900 166900 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.19%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C184:99 scaffold564 SAMTools SNP 168583 168583 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold564 SAMTools SNP 168916 168916 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold564 SAMTools SNP 169857 169857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold564 SAMTools SNP 172200 172200 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold564 SAMTools SNP 172393 172393 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 172398 172398 76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold564 SAMTools SNP 172888 172888 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold564 SAMTools SNP 175197 175197 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 175206 175206 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 176258 176258 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold564 SAMTools SNP 177298 177298 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold564 SAMTools SNP 177323 177323 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold564 SAMTools SNP 177349 177349 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.084%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold564 SAMTools SNP 178429 178429 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold564 SAMTools SNP 178447 178447 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold564 SAMTools SNP 178486 178486 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.8e-09%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C225:31 scaffold564 SAMTools SNP 201271 201271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold564 SAMTools SNP 201337 201337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C101%2C17%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-15%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 202151 202151 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C43%2C137%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 202303 202303 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C25%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C129%2C0:99 scaffold564 SAMTools SNP 202467 202467 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C33%2C0:63 scaffold564 SAMTools SNP 202711 202711 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C39%2C0:75 scaffold564 SAMTools SNP 202844 202844 104 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C27%2C0%2C131%2C11%2C128:51 scaffold564 SAMTools SNP 202900 202900 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0233%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D3.4%3BPV4%3D0.4%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C28:31 scaffold564 SAMTools SNP 205342 205342 68 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D904%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0%2C92%2C5%2C89:45 scaffold564 SAMTools SNP 205510 205510 108 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C63%2C0%2C132%2C41%2C129:99 scaffold564 SAMTools SNP 205963 205963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C36%2C65%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 205972 205972 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 206236 206236 16.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold564 SAMTools SNP 206239 206239 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold564 SAMTools SNP 206350 206350 3.41 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C25%2C19%2C34%2C0%2C28:4 scaffold564 SAMTools SNP 213843 213843 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C20%2C0%3BMQ%3D49%3BFQ%3D195%3BPV4%3D1%2C1%2C0.35%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C251:99 scaffold564 SAMTools SNP 214799 214799 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C22%2C5%3BMQ%3D49%3BFQ%3D185%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold564 SAMTools SNP 218683 218683 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C7%2C19%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.2%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 218692 218692 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C1%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 218725 218725 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C44%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold564 SAMTools SNP 220086 220086 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.58%2C0.21%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold564 SAMTools SNP 220124 220124 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold564 SAMTools SNP 220134 220134 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold564 SAMTools SNP 236247 236247 10.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold564 SAMTools SNP 239490 239490 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold564 SAMTools SNP 239518 239518 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold564 SAMTools SNP 240733 240733 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold564 SAMTools SNP 240753 240753 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold564 SAMTools SNP 241074 241074 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 243171 243171 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 243223 243223 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold564 SAMTools SNP 243972 243972 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C44%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold564 SAMTools SNP 243992 243992 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold564 SAMTools SNP 244320 244320 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C140:99 scaffold564 SAMTools SNP 244612 244612 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 244683 244683 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.56%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold564 SAMTools SNP 244712 244712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold564 SAMTools SNP 245154 245154 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C18%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold564 SAMTools SNP 245528 245528 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 245747 245747 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold564 SAMTools SNP 245780 245780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold564 SAMTools SNP 262811 262811 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold564 SAMTools SNP 262967 262967 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold564 SAMTools SNP 263022 263022 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold564 SAMTools SNP 263299 263299 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold564 SAMTools SNP 266074 266074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold564 SAMTools SNP 266424 266424 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C1%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.47%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold564 SAMTools SNP 266467 266467 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 266956 266956 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold564 SAMTools SNP 267012 267012 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C24%2C46%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 270350 270350 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold564 SAMTools SNP 270388 270388 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.0038%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C110:82 scaffold564 SAMTools SNP 270489 270489 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C110:48 scaffold564 SAMTools SNP 275586 275586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 276880 276880 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 277140 277140 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 279213 279213 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold564 SAMTools SNP 279220 279220 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold564 SAMTools SNP 279346 279346 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.25%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold564 SAMTools SNP 280024 280024 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 280097 280097 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00037%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 280469 280469 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C0.013%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 280538 280538 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold564 SAMTools SNP 280619 280619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C27%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0013%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 281373 281373 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C10%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 281419 281419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 282084 282084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 282258 282258 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C54%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold564 SAMTools SNP 282484 282484 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C35%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1%2C1%2C4.2e-13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold564 SAMTools SNP 286500 286500 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold564 SAMTools SNP 287547 287547 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C255%2C0:99 scaffold564 SAMTools SNP 287942 287942 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C34%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold564 SAMTools SNP 287957 287957 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C18%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 288738 288738 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C42%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 290526 290526 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 290869 290869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C47%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 292503 292503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C93%2C11%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.2%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 292918 292918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C36%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold564 SAMTools SNP 293569 293569 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold564 SAMTools SNP 294018 294018 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C67%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold564 SAMTools SNP 295812 295812 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C8%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.29%2C0.43%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C244:99 scaffold564 SAMTools SNP 297304 297304 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.26%2C1.3e-16%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C155:75 scaffold564 SAMTools SNP 298561 298561 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold564 SAMTools SNP 298577 298577 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold564 SAMTools SNP 299273 299273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 299362 299362 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C55%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold564 SAMTools SNP 299587 299587 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C8%2C17%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.55%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold564 SAMTools SNP 299611 299611 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 299623 299623 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C3%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold564 SAMTools SNP 299924 299924 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C21%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 299975 299975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold564 SAMTools SNP 300146 300146 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C168%2C51%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-31%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 300162 300162 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 300413 300413 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C210%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 302797 302797 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold564 SAMTools SNP 302919 302919 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C61%2C19%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 303296 303296 180 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C30%2C14%2C8%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.3%2C0.2%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold564 SAMTools SNP 303317 303317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C59%2C26%3BMQ%3D50%3BFQ%3D-253%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold564 SAMTools SNP 303413 303413 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold564 SAMTools SNP 303997 303997 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C11%2C56%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 304105 304105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C56%2C124%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 304135 304135 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C327%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 305548 305548 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D48%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold564 SAMTools SNP 305603 305603 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C14%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold564 SAMTools SNP 305832 305832 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 306028 306028 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C110:33 scaffold564 SAMTools SNP 307271 307271 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C40%2C6%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C1%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 312658 312658 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D28%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C220:31 scaffold564 SAMTools SNP 312740 312740 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold564 SAMTools SNP 312937 312937 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C0:75 scaffold564 SAMTools SNP 312949 312949 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold564 SAMTools SNP 313012 313012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.016%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold564 SAMTools SNP 313024 313024 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C18%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold564 SAMTools SNP 313595 313595 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C15%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold564 SAMTools SNP 313612 313612 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C15%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.54%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold564 SAMTools SNP 313651 313651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold564 SAMTools SNP 313684 313684 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold564 SAMTools SNP 315117 315117 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold564 SAMTools SNP 315457 315457 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.072%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold564 SAMTools SNP 315804 315804 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold564 SAMTools SNP 315873 315873 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold564 SAMTools SNP 316738 316738 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.62%3BPV4%3D1%2C0.00098%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C35:38 scaffold564 SAMTools SNP 317093 317093 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C10%3BMQ%3D50%3BFQ%3D-65%3BPV4%3D0.35%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C38%2C0:73 scaffold564 SAMTools SNP 317526 317526 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.072%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold564 SAMTools SNP 317544 317544 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold564 SAMTools SNP 317586 317586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold564 SAMTools SNP 317619 317619 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold564 SAMTools SNP 317872 317872 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold564 SAMTools SNP 320311 320311 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold564 SAMTools SNP 320610 320610 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold564 SAMTools SNP 320911 320911 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.7%2C0.4%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold564 SAMTools SNP 321364 321364 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0013%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold564 SAMTools SNP 321453 321453 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold564 SAMTools SNP 321509 321509 172 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold564 SAMTools SNP 321519 321519 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold564 SAMTools SNP 321930 321930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold564 SAMTools SNP 322695 322695 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold564 SAMTools SNP 323955 323955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C3.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 324405 324405 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C13%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.018%2C9.9e-27%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold564 SAMTools SNP 324900 324900 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold564 SAMTools SNP 325174 325174 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.19%2C0.23%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C169:99 scaffold564 SAMTools SNP 325183 325183 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold564 SAMTools SNP 325269 325269 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold564 SAMTools SNP 326120 326120 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.28%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold564 SAMTools SNP 327035 327035 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold564 SAMTools SNP 327089 327089 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.063%2C0.0014%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold564 SAMTools SNP 327319 327319 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.019%2C5.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold564 SAMTools SNP 327330 327330 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 327482 327482 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C12%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.14%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold564 SAMTools SNP 327656 327656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 327721 327721 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 327742 327742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-05%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 328036 328036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 328178 328178 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold564 SAMTools SNP 329430 329430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 329692 329692 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.14%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 330061 330061 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 330230 330230 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C4.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold564 SAMTools SNP 330422 330422 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C0%2C36%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.5%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold564 SAMTools SNP 330793 330793 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold564 SAMTools SNP 331422 331422 5.29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold564 SAMTools SNP 334910 334910 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C80:71 scaffold564 SAMTools SNP 335839 335839 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold564 SAMTools SNP 335983 335983 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold564 SAMTools SNP 336023 336023 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C14%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold564 SAMTools SNP 336300 336300 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold564 SAMTools SNP 337950 337950 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold564 SAMTools SNP 337966 337966 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold564 SAMTools SNP 338737 338737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold564 SAMTools SNP 343452 343452 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold564 SAMTools SNP 343453 343453 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold564 SAMTools SNP 343972 343972 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C116:99 scaffold564 SAMTools SNP 349070 349070 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold564 SAMTools SNP 349094 349094 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold564 SAMTools SNP 349120 349120 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C181:99 scaffold564 SAMTools SNP 349136 349136 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold564 SAMTools SNP 352460 352460 19 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold564 SAMTools SNP 353751 353751 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 374932 374932 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold564 SAMTools SNP 378778 378778 37.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold564 SAMTools SNP 379352 379352 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold564 SAMTools SNP 380770 380770 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold564 SAMTools SNP 398678 398678 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C7%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.00056%2C0.004%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold564 SAMTools SNP 398687 398687 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C43%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold564 SAMTools SNP 398756 398756 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.098%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 399039 399039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 403345 403345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C39%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold564 SAMTools SNP 403360 403360 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold564 SAMTools SNP 403626 403626 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold564 SAMTools SNP 404562 404562 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C30%2C0:57 scaffold564 SAMTools SNP 404823 404823 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold564 SAMTools SNP 406230 406230 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C14%2C51%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D8.9e-05%2C4.4e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold564 SAMTools SNP 408207 408207 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold564 SAMTools SNP 409000 409000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 409028 409028 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold564 SAMTools SNP 409341 409341 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold564 SAMTools SNP 409373 409373 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold564 SAMTools SNP 409940 409940 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 409974 409974 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold564 SAMTools SNP 410553 410553 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold564 SAMTools SNP 412198 412198 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold564 SAMTools SNP 412223 412223 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold564 SAMTools SNP 412710 412710 106 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D90.9%3BPV4%3D0.26%2C5.9e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C118:99 scaffold564 SAMTools SNP 413905 413905 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1.3e-30%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C229:65 scaffold564 SAMTools SNP 414644 414644 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold564 SAMTools SNP 414653 414653 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold564 SAMTools SNP 414656 414656 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold564 SAMTools SNP 417059 417059 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold564 SAMTools SNP 417133 417133 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C9.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C132:53 scaffold564 SAMTools SNP 417425 417425 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C51%2C0:99 scaffold564 SAMTools SNP 417650 417650 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold564 SAMTools SNP 424646 424646 29.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold564 SAMTools SNP 425047 425047 42.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold564 SAMTools SNP 425868 425868 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold564 SAMTools SNP 427276 427276 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 429584 429584 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 432805 432805 86.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C18%2C0:33 scaffold564 SAMTools SNP 433131 433131 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 433227 433227 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.019%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold564 SAMTools SNP 433469 433469 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.51%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold564 SAMTools SNP 434461 434461 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.15%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold564 SAMTools SNP 435018 435018 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold564 SAMTools SNP 436559 436559 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold564 SAMTools SNP 437268 437268 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold564 SAMTools SNP 437346 437346 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold564 SAMTools SNP 438890 438890 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold564 SAMTools SNP 441994 441994 45.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold564 SAMTools SNP 445402 445402 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.12%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold564 SAMTools SNP 445414 445414 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold564 SAMTools SNP 447182 447182 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold564 SAMTools SNP 449525 449525 52.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold564 SAMTools SNP 449590 449590 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold568 SAMTools SNP 61275 61275 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold568 SAMTools SNP 61387 61387 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold568 SAMTools SNP 161559 161559 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold568 SAMTools SNP 161577 161577 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold568 SAMTools SNP 291775 291775 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D41%3BFQ%3D-52%3BPV4%3D1%2C2.1e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C25%2C0:47 scaffold569 SAMTools SNP 199 199 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold569 SAMTools SNP 6764 6764 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold569 SAMTools SNP 10714 10714 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C0.25%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C194:57 scaffold569 SAMTools SNP 10750 10750 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold569 SAMTools SNP 10765 10765 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold569 SAMTools SNP 11058 11058 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold569 SAMTools SNP 11112 11112 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold569 SAMTools SNP 11121 11121 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold569 SAMTools SNP 11504 11504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 11528 11528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 11603 11603 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 11819 11819 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 15521 15521 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C4.5e-12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold569 SAMTools SNP 15546 15546 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 15851 15851 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold569 SAMTools SNP 15901 15901 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold569 SAMTools SNP 15943 15943 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold569 SAMTools SNP 16101 16101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold569 SAMTools SNP 16128 16128 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold569 SAMTools SNP 16648 16648 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.0058%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C173:44 scaffold569 SAMTools SNP 16658 16658 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.098%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C179:53 scaffold569 SAMTools SNP 16678 16678 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0093%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold569 SAMTools SNP 16954 16954 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold569 SAMTools SNP 16957 16957 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold569 SAMTools SNP 16969 16969 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold569 SAMTools SNP 16984 16984 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C137:99 scaffold569 SAMTools SNP 17231 17231 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold569 SAMTools SNP 17234 17234 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold569 SAMTools SNP 18231 18231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C38%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 18891 18891 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 19290 19290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 19329 19329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C18%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold569 SAMTools SNP 20042 20042 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C0%2C8%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold569 SAMTools SNP 20141 20141 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C60%2C0:99 scaffold569 SAMTools SNP 20191 20191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C96%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 23538 23538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.41%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold569 SAMTools SNP 23565 23565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold569 SAMTools SNP 23774 23774 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D4.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold569 SAMTools SNP 23785 23785 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D4.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold569 SAMTools SNP 24091 24091 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D15%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.28%2C0.0097%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold569 SAMTools SNP 24099 24099 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.065%2C0.0016%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold569 SAMTools SNP 24485 24485 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D5.37%3BPV4%3D1%2C0.035%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C31:34 scaffold569 SAMTools SNP 24927 24927 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold569 SAMTools SNP 24948 24948 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 61269 61269 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.19%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C84:70 scaffold569 SAMTools SNP 61275 61275 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C130:42 scaffold569 SAMTools SNP 61671 61671 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold569 SAMTools SNP 61704 61704 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 61905 61905 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C3.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C104:52 scaffold569 SAMTools SNP 61983 61983 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.47%2C8e-09%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C74:47 scaffold569 SAMTools SNP 72645 72645 20 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C177:53 scaffold569 SAMTools SNP 88322 88322 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.6e-65%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C253:51 scaffold569 SAMTools SNP 89140 89140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D484%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C302%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 89458 89458 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 89581 89581 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C402%2C104%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 89656 89656 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D607%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C474%2C110%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 93472 93472 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold569 SAMTools SNP 93794 93794 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold569 SAMTools SNP 93917 93917 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold569 SAMTools SNP 93934 93934 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold569 SAMTools SNP 103708 103708 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 108042 108042 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 115073 115073 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 117106 117106 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold569 SAMTools SNP 118149 118149 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold569 SAMTools SNP 123205 123205 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold569 SAMTools SNP 123207 123207 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold569 SAMTools SNP 132330 132330 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold569 SAMTools SNP 132363 132363 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold569 SAMTools SNP 134002 134002 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.45%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold569 SAMTools SNP 134038 134038 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold569 SAMTools SNP 134540 134540 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C234:99 scaffold569 SAMTools SNP 134663 134663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold569 SAMTools SNP 136275 136275 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold569 SAMTools SNP 136290 136290 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.14%2C0.0062%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C185:53 scaffold569 SAMTools SNP 136393 136393 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold569 SAMTools SNP 136408 136408 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold569 SAMTools SNP 136538 136538 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold569 SAMTools SNP 136816 136816 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C27%2C0:51 scaffold569 SAMTools SNP 136825 136825 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 137385 137385 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C29%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold569 SAMTools SNP 137628 137628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 156963 156963 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 157057 157057 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 175253 175253 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold569 SAMTools SNP 175474 175474 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C26%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1.4e-08%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C169:99 scaffold569 SAMTools SNP 175492 175492 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C32%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D2.9e-09%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C154:99 scaffold569 SAMTools SNP 176009 176009 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-90%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold569 SAMTools SNP 176296 176296 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold569 SAMTools SNP 176318 176318 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold569 SAMTools SNP 176324 176324 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold569 SAMTools SNP 176644 176644 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C19%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C58%2C0:99 scaffold569 SAMTools SNP 176689 176689 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold569 SAMTools SNP 177568 177568 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C132:99 scaffold569 SAMTools SNP 177598 177598 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold569 SAMTools SNP 177607 177607 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold569 SAMTools SNP 177616 177616 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold569 SAMTools SNP 178330 178330 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C21%2C0:39 scaffold569 SAMTools SNP 178376 178376 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold569 SAMTools SNP 178399 178399 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold569 SAMTools SNP 178958 178958 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C4%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold569 SAMTools SNP 179044 179044 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D388%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C34%2C154%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C0.098%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 179423 179423 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C177%2C6%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 179440 179440 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C133%2C3%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.38%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold569 SAMTools SNP 180484 180484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold569 SAMTools SNP 180501 180501 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C0%2C11%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.18%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold569 SAMTools SNP 181020 181020 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold569 SAMTools SNP 181443 181443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold569 SAMTools SNP 181461 181461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold569 SAMTools SNP 181521 181521 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold569 SAMTools SNP 181542 181542 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold569 SAMTools SNP 181841 181841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold569 SAMTools SNP 182291 182291 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.57%2C0.26%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C213:99 scaffold569 SAMTools SNP 182770 182770 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold569 SAMTools SNP 184298 184298 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold569 SAMTools SNP 184307 184307 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold569 SAMTools SNP 184356 184356 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold569 SAMTools SNP 184378 184378 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold569 SAMTools SNP 184831 184831 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold569 SAMTools SNP 184898 184898 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold569 SAMTools SNP 204545 204545 18 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold569 SAMTools SNP 204619 204619 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold57 SAMTools SNP 1233 1233 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C35%2C1%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold57 SAMTools SNP 1413 1413 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0075%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold57 SAMTools SNP 1755 1755 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C53%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.31%2C0.31%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C234:99 scaffold57 SAMTools SNP 1785 1785 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold57 SAMTools SNP 7609 7609 41.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold57 SAMTools SNP 9959 9959 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 16892 16892 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 18413 18413 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold57 SAMTools SNP 20626 20626 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 20949 20949 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 21033 21033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold57 SAMTools SNP 21592 21592 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.54%2C0.0067%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold57 SAMTools SNP 21620 21620 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.45%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C193:99 scaffold57 SAMTools SNP 21643 21643 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold57 SAMTools SNP 22026 22026 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold57 SAMTools SNP 22146 22146 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold57 SAMTools SNP 22162 22162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold57 SAMTools SNP 22326 22326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold57 SAMTools SNP 22381 22381 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold57 SAMTools SNP 22722 22722 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold57 SAMTools SNP 22772 22772 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold57 SAMTools SNP 22796 22796 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold57 SAMTools SNP 23229 23229 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 23233 23233 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 23240 23240 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C18%2C0:33 scaffold57 SAMTools SNP 24103 24103 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 24204 24204 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 24231 24231 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C1%2C14%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold57 SAMTools SNP 24518 24518 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold57 SAMTools SNP 24610 24610 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C26%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.0009%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 24827 24827 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 24870 24870 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C37%2C5%2C23%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.77%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold57 SAMTools SNP 25295 25295 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold57 SAMTools SNP 25358 25358 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold57 SAMTools SNP 25367 25367 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold57 SAMTools SNP 25385 25385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C5%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.52%2C0.24%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold57 SAMTools SNP 25410 25410 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.22%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold57 SAMTools SNP 25870 25870 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.078%2C0.00016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold57 SAMTools SNP 43068 43068 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 43077 43077 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold57 SAMTools SNP 43780 43780 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold57 SAMTools SNP 53659 53659 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C15%2C0:27 scaffold57 SAMTools SNP 53720 53720 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold57 SAMTools SNP 57913 57913 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold57 SAMTools SNP 57976 57976 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold57 SAMTools SNP 58776 58776 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold57 SAMTools SNP 58888 58888 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D31.5%3BPV4%3D0.4%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C68:61 scaffold57 SAMTools SNP 61085 61085 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.0038%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold57 SAMTools SNP 62108 62108 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C56%2C88%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C6.6e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 66702 66702 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C31%2C2%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 67276 67276 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 67342 67342 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 67515 67515 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold57 SAMTools SNP 72889 72889 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.69%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold57 SAMTools SNP 73606 73606 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.49%2C2.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C178:64 scaffold57 SAMTools SNP 73670 73670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 74497 74497 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold57 SAMTools SNP 74561 74561 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 74585 74585 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold57 SAMTools SNP 75611 75611 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold57 SAMTools SNP 75672 75672 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 75793 75793 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C15%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold57 SAMTools SNP 75839 75839 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C37%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 76913 76913 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C34%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.31%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 76942 76942 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C8%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.087%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 78278 78278 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold57 SAMTools SNP 78292 78292 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold57 SAMTools SNP 79615 79615 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 79720 79720 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold57 SAMTools SNP 82676 82676 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 83140 83140 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold57 SAMTools SNP 83313 83313 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold57 SAMTools SNP 83341 83341 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold57 SAMTools SNP 83556 83556 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold57 SAMTools SNP 87411 87411 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 87415 87415 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 87513 87513 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.43%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C160:99 scaffold57 SAMTools SNP 88243 88243 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold57 SAMTools SNP 88441 88441 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C0.17%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold57 SAMTools SNP 88788 88788 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 88794 88794 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 89706 89706 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.2%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C141:99 scaffold57 SAMTools SNP 90039 90039 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 90061 90061 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 91541 91541 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 91574 91574 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 91788 91788 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 92541 92541 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C254:51 scaffold57 SAMTools SNP 92777 92777 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C17%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold57 SAMTools SNP 92817 92817 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.31%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 93146 93146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold57 SAMTools SNP 93155 93155 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold57 SAMTools SNP 93751 93751 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold57 SAMTools SNP 94169 94169 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold57 SAMTools SNP 94187 94187 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C39%2C0:75 scaffold57 SAMTools SNP 94303 94303 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.057%2C0.013%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold57 SAMTools SNP 94465 94465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold57 SAMTools SNP 98920 98920 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C0.00018%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C217:99 scaffold57 SAMTools SNP 99442 99442 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold57 SAMTools SNP 99735 99735 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 100275 100275 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold57 SAMTools SNP 100365 100365 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 107996 107996 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.63%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold57 SAMTools SNP 108857 108857 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold57 SAMTools SNP 108878 108878 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 109488 109488 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.28%2C0.059%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold57 SAMTools SNP 109491 109491 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.016%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold57 SAMTools SNP 109496 109496 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.075%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C126:84 scaffold57 SAMTools SNP 109539 109539 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C78%2C0:99 scaffold57 SAMTools SNP 109641 109641 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold57 SAMTools SNP 109645 109645 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C0.47%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C245:99 scaffold57 SAMTools SNP 109964 109964 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.61%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold57 SAMTools SNP 110367 110367 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold57 SAMTools SNP 110373 110373 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.64%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold57 SAMTools SNP 113128 113128 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.27%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 113145 113145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold57 SAMTools SNP 117085 117085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C14%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold57 SAMTools SNP 118163 118163 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C33%2C0:63 scaffold57 SAMTools SNP 121146 121146 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold57 SAMTools SNP 122410 122410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C26%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.77%2C0.0026%2C0.031%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 122437 122437 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C30%2C4%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 122635 122635 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C35%2C3%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.69%2C1%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 124932 124932 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C11%2C35%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.065%2C1e-11%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold57 SAMTools SNP 125029 125029 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C73%2C25%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 125311 125311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C99%2C9%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1.2e-09%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 125637 125637 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold57 SAMTools SNP 125688 125688 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C74%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold57 SAMTools SNP 125718 125718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold57 SAMTools SNP 125907 125907 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold57 SAMTools SNP 126331 126331 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C5.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C210:85 scaffold57 SAMTools SNP 127656 127656 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C18%2C28%2C20%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.005%2C1.2e-71%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold57 SAMTools SNP 127734 127734 75.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold57 SAMTools SNP 127768 127768 3.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold57 SAMTools SNP 127817 127817 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold57 SAMTools SNP 128259 128259 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold57 SAMTools SNP 131787 131787 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C27%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 132738 132738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 133219 133219 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 133368 133368 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C11%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.8e-14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C242:50 scaffold57 SAMTools SNP 133428 133428 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 135540 135540 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold57 SAMTools SNP 135563 135563 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold57 SAMTools SNP 137389 137389 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C27%2C0:51 scaffold57 SAMTools SNP 138237 138237 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold57 SAMTools SNP 140792 140792 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold57 SAMTools SNP 140878 140878 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 142065 142065 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold57 SAMTools SNP 142449 142449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold57 SAMTools SNP 142464 142464 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold57 SAMTools SNP 142863 142863 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 143154 143154 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C238:99 scaffold57 SAMTools SNP 143492 143492 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.12%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold57 SAMTools SNP 143561 143561 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 143767 143767 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C16%2C31%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 143782 143782 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C20%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 144137 144137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C44%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold57 SAMTools SNP 144736 144736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 144745 144745 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 145178 145178 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C36%2C3%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold57 SAMTools SNP 145656 145656 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C231:59 scaffold57 SAMTools SNP 145667 145667 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold57 SAMTools SNP 145673 145673 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 151629 151629 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C54%2C0:95 scaffold57 SAMTools SNP 153631 153631 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 153681 153681 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C32%2C65%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.12%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 154974 154974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C9.1e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 154986 154986 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0024%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold57 SAMTools SNP 155295 155295 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C10%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold57 SAMTools SNP 156450 156450 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C8%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.3%2C3.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold57 SAMTools SNP 157128 157128 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold57 SAMTools SNP 157864 157864 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold57 SAMTools SNP 157887 157887 87.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold57 SAMTools SNP 157941 157941 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C54%2C0:99 scaffold57 SAMTools SNP 158112 158112 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C24%2C0:45 scaffold57 SAMTools SNP 158835 158835 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 159330 159330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C5%2C47%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 162424 162424 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold57 SAMTools SNP 162436 162436 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold57 SAMTools SNP 166828 166828 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold57 SAMTools SNP 169492 169492 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold57 SAMTools SNP 169534 169534 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold57 SAMTools SNP 169564 169564 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold57 SAMTools SNP 169579 169579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold57 SAMTools SNP 172198 172198 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold57 SAMTools SNP 172204 172204 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.26%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C32:35 scaffold57 SAMTools SNP 172462 172462 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold57 SAMTools SNP 172510 172510 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 173077 173077 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold57 SAMTools SNP 173326 173326 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.26%2C0.066%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold57 SAMTools SNP 173704 173704 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C14%3BMQ%3D33%3BFQ%3D-94%3BPV4%3D0.48%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C67%2C0:99 scaffold57 SAMTools SNP 175099 175099 178 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C44%2C247%2C0%2C238:99 scaffold57 SAMTools SNP 175126 175126 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold57 SAMTools SNP 175407 175407 120 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold57 SAMTools SNP 175734 175734 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C43%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold57 SAMTools SNP 175782 175782 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold57 SAMTools SNP 175878 175878 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold57 SAMTools SNP 176188 176188 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold57 SAMTools SNP 176382 176382 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold57 SAMTools SNP 176403 176403 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 176477 176477 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold57 SAMTools SNP 177609 177609 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.063%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C202:99 scaffold57 SAMTools SNP 177646 177646 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.52%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold57 SAMTools SNP 177681 177681 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold57 SAMTools SNP 177702 177702 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.21%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold57 SAMTools SNP 178094 178094 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 178109 178109 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold57 SAMTools SNP 178112 178112 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold57 SAMTools SNP 182632 182632 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 182875 182875 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C5%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold57 SAMTools SNP 184380 184380 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold57 SAMTools SNP 184401 184401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 184434 184434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C21%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 186914 186914 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C211:99 scaffold57 SAMTools SNP 194873 194873 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 195419 195419 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 195469 195469 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold57 SAMTools SNP 232293 232293 42.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold57 SAMTools SNP 232640 232640 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold57 SAMTools SNP 232678 232678 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D0.1%2C0.2%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold57 SAMTools SNP 232704 232704 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold57 SAMTools SNP 232712 232712 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 232727 232727 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 234309 234309 92.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold57 SAMTools SNP 234337 234337 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 245298 245298 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1.3e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold57 SAMTools SNP 245331 245331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C37%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 248002 248002 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C25%2C14%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 248071 248071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C25%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C7e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 251014 251014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold57 SAMTools SNP 251126 251126 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C3%2C64%2C25%3BMQ%3D50%3BFQ%3D165%3BPV4%3D6.6e-06%2C4.5e-148%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold57 SAMTools SNP 251418 251418 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 260351 260351 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold57 SAMTools SNP 260360 260360 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold57 SAMTools SNP 260515 260515 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 260522 260522 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 261417 261417 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 273033 273033 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold57 SAMTools SNP 279717 279717 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold57 SAMTools SNP 279732 279732 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold57 SAMTools SNP 283414 283414 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 287860 287860 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 287897 287897 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold57 SAMTools SNP 289244 289244 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.083%2C0.053%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold57 SAMTools SNP 290370 290370 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C228:99 scaffold57 SAMTools SNP 290400 290400 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C201:99 scaffold57 SAMTools SNP 290403 290403 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold57 SAMTools SNP 291558 291558 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold57 SAMTools SNP 291582 291582 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 291735 291735 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C18%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-07%2C0.025%2C1%2C2.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 291804 291804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold57 SAMTools SNP 292749 292749 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C41%2C16%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 293669 293669 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C8%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.41%2C9.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold57 SAMTools SNP 293690 293690 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C64%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold57 SAMTools SNP 293999 293999 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C70%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C226%2C0:99 scaffold57 SAMTools SNP 296981 296981 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 298426 298426 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold57 SAMTools SNP 298598 298598 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C4.5e-06%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C102:99 scaffold57 SAMTools SNP 299992 299992 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 300412 300412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold57 SAMTools SNP 300433 300433 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold57 SAMTools SNP 300682 300682 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.066%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 301064 301064 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold57 SAMTools SNP 327198 327198 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold57 SAMTools SNP 331960 331960 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.56%2C1.4e-05%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold57 SAMTools SNP 337357 337357 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold57 SAMTools SNP 337377 337377 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold57 SAMTools SNP 361557 361557 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold57 SAMTools SNP 361598 361598 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.35%2C4.5e-25%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold57 SAMTools SNP 362117 362117 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold57 SAMTools SNP 362388 362388 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold57 SAMTools SNP 362467 362467 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold57 SAMTools SNP 363294 363294 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold57 SAMTools SNP 363300 363300 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold57 SAMTools SNP 363315 363315 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold57 SAMTools SNP 364910 364910 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D32%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C27%2C0:51 scaffold57 SAMTools SNP 366263 366263 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C27%2C0:51 scaffold57 SAMTools SNP 367892 367892 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C8%3BMQ%3D33%3BFQ%3D64%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C91:94 scaffold57 SAMTools SNP 369548 369548 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold57 SAMTools SNP 371015 371015 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C3%2C0%3BMQ%3D47%3BFQ%3D35%3BPV4%3D1%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C237:65 scaffold57 SAMTools SNP 371018 371018 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C11%2C1%3BMQ%3D47%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C199:99 scaffold57 SAMTools SNP 371255 371255 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.26%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold57 SAMTools SNP 371266 371266 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C21%2C2%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.67%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold57 SAMTools SNP 371431 371431 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C6%3BMQ%3D40%3BFQ%3D143%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C205:99 scaffold57 SAMTools SNP 371453 371453 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C5%2C10%3BMQ%3D40%3BFQ%3D146%3BPV4%3D0.17%2C1%2C0.02%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C251:99 scaffold57 SAMTools SNP 373538 373538 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C9%2C0:16 scaffold57 SAMTools SNP 373604 373604 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 376308 376308 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold57 SAMTools SNP 395711 395711 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold57 SAMTools SNP 395875 395875 46.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold57 SAMTools SNP 397416 397416 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold57 SAMTools SNP 397448 397448 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold57 SAMTools SNP 400086 400086 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold57 SAMTools SNP 400463 400463 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold57 SAMTools SNP 400518 400518 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 400571 400571 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold57 SAMTools SNP 404778 404778 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 405056 405056 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C39:42 scaffold57 SAMTools SNP 405060 405060 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold57 SAMTools SNP 405065 405065 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold57 SAMTools SNP 405086 405086 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold57 SAMTools SNP 414747 414747 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0201%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold57 SAMTools SNP 416254 416254 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold57 SAMTools SNP 416885 416885 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold57 SAMTools SNP 420453 420453 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 424707 424707 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold57 SAMTools SNP 426239 426239 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 426422 426422 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold57 SAMTools SNP 426424 426424 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold57 SAMTools SNP 426448 426448 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold57 SAMTools SNP 426495 426495 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 432398 432398 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold57 SAMTools SNP 435128 435128 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C245:99 scaffold57 SAMTools SNP 436791 436791 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold57 SAMTools SNP 437299 437299 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.66%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold57 SAMTools SNP 437346 437346 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold57 SAMTools SNP 438995 438995 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 440030 440030 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold57 SAMTools SNP 440051 440051 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 440493 440493 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 440505 440505 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold57 SAMTools SNP 440838 440838 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold57 SAMTools SNP 440875 440875 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold57 SAMTools SNP 441616 441616 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.037%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C233:99 scaffold57 SAMTools SNP 442352 442352 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.42%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold57 SAMTools SNP 444998 444998 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 448173 448173 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C13%2C4%3BMQ%3D31%3BFQ%3D150%3BPV4%3D0.53%2C0.36%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold57 SAMTools SNP 450407 450407 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C11%3BMQ%3D43%3BFQ%3D179%3BPV4%3D0.72%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold57 SAMTools SNP 451027 451027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C7%2C3%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.69%2C0.054%2C0.34%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 451061 451061 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold57 SAMTools SNP 451373 451373 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C8%2C5%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.17%2C0.4%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 457371 457371 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C110:99 scaffold57 SAMTools SNP 459238 459238 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0033%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C173:36 scaffold57 SAMTools SNP 459261 459261 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold57 SAMTools SNP 473529 473529 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold57 SAMTools SNP 481368 481368 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold57 SAMTools SNP 481383 481383 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold57 SAMTools SNP 481957 481957 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 482480 482480 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold57 SAMTools SNP 482489 482489 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold57 SAMTools SNP 482623 482623 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold57 SAMTools SNP 485507 485507 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold57 SAMTools SNP 485509 485509 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold57 SAMTools SNP 486886 486886 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.55%2C1.2e-11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold57 SAMTools SNP 486898 486898 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.44%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold57 SAMTools SNP 486921 486921 79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.091%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold57 SAMTools SNP 487770 487770 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.15%2C0.34%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold57 SAMTools SNP 488283 488283 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.00034%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C223:33 scaffold57 SAMTools SNP 488316 488316 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold57 SAMTools SNP 488395 488395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold57 SAMTools SNP 489616 489616 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold57 SAMTools SNP 490359 490359 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C7%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C7.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold57 SAMTools SNP 490705 490705 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C252:99 scaffold57 SAMTools SNP 491122 491122 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.19%2C9.8e-16%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold57 SAMTools SNP 491248 491248 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold57 SAMTools SNP 491251 491251 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold57 SAMTools SNP 491557 491557 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold57 SAMTools SNP 491572 491572 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold57 SAMTools SNP 491620 491620 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold57 SAMTools SNP 491722 491722 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C6%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.073%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold57 SAMTools SNP 492355 492355 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold57 SAMTools SNP 492589 492589 41.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold57 SAMTools SNP 492619 492619 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C36%2C0:69 scaffold57 SAMTools SNP 492799 492799 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.014%2C0.28%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold57 SAMTools SNP 494825 494825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C17%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.035%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold57 SAMTools SNP 494831 494831 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold57 SAMTools SNP 495385 495385 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C75%2C0:99 scaffold57 SAMTools SNP 495481 495481 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C17%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1.2e-05%2C2.1e-21%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold57 SAMTools SNP 496023 496023 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 496028 496028 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.15%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold57 SAMTools SNP 496092 496092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 496247 496247 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 497138 497138 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C39%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C178%2C0:99 scaffold57 SAMTools SNP 497399 497399 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C87%2C0:99 scaffold57 SAMTools SNP 499472 499472 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold57 SAMTools SNP 500823 500823 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold57 SAMTools SNP 500849 500849 20.1 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold57 SAMTools SNP 501167 501167 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.34%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold57 SAMTools SNP 501168 501168 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C2%2C8%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.012%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold57 SAMTools SNP 501322 501322 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.046%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold57 SAMTools SNP 501410 501410 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.3%2C6.7e-33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C169:99 scaffold57 SAMTools SNP 502086 502086 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D31%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0021%2C1%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold57 SAMTools SNP 502511 502511 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold57 SAMTools SNP 502512 502512 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold57 SAMTools SNP 502815 502815 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold57 SAMTools SNP 503023 503023 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C184:56 scaffold57 SAMTools SNP 508324 508324 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold57 SAMTools SNP 509384 509384 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold57 SAMTools SNP 509456 509456 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.042%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold57 SAMTools SNP 510167 510167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold57 SAMTools SNP 510529 510529 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C19%2C34%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 510558 510558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold57 SAMTools SNP 511072 511072 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold57 SAMTools SNP 511651 511651 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23:45 scaffold57 SAMTools SNP 511666 511666 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C8%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold57 SAMTools SNP 512240 512240 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C5%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0066%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold57 SAMTools SNP 512390 512390 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.33%2C3.5e-12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C116:33 scaffold57 SAMTools SNP 580652 580652 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold574 SAMTools SNP 6123 6123 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold574 SAMTools SNP 6177 6177 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold574 SAMTools SNP 7411 7411 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold574 SAMTools SNP 8146 8146 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.43%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C121:56 scaffold574 SAMTools SNP 8531 8531 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold574 SAMTools SNP 19011 19011 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold574 SAMTools SNP 19023 19023 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold574 SAMTools SNP 19866 19866 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.52%2C0.041%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold574 SAMTools SNP 19912 19912 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C198:69 scaffold574 SAMTools SNP 19914 19914 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.58%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold574 SAMTools SNP 19941 19941 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold574 SAMTools SNP 22097 22097 9.49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold574 SAMTools SNP 22887 22887 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold574 SAMTools SNP 24354 24354 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C24%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold574 SAMTools SNP 25188 25188 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C27%2C31%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 25257 25257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.092%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 25865 25865 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C26%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.49%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold574 SAMTools SNP 31574 31574 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C249%3BMQ%3D9%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold574 SAMTools SNP 31634 31634 195 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C60%2C46%2C13%3BMQ%3D34%3BFQ%3D171%3BPV4%3D3.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C198:99 scaffold574 SAMTools SNP 32501 32501 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C8%2C24%2C8%3BMQ%3D44%3BFQ%3D174%3BPV4%3D0.25%2C0.47%2C0.0097%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold574 SAMTools SNP 32563 32563 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C0%2C27%3BMQ%3D47%3BFQ%3D14.2%3BPV4%3D0.17%2C3e-19%2C5.6e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold574 SAMTools SNP 32614 32614 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C26:29 scaffold574 SAMTools SNP 101266 101266 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold574 SAMTools SNP 110921 110921 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold574 SAMTools SNP 110942 110942 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold574 SAMTools SNP 111032 111032 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold574 SAMTools SNP 113576 113576 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold574 SAMTools SNP 113580 113580 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.039%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold574 SAMTools SNP 113775 113775 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold574 SAMTools SNP 113844 113844 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold574 SAMTools SNP 119401 119401 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C218:99 scaffold574 SAMTools SNP 119788 119788 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.23%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold574 SAMTools SNP 119894 119894 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 120811 120811 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C19%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0088%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold574 SAMTools SNP 120952 120952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-05%2C3.3e-05%2C1%2C0.00085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 122266 122266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 123519 123519 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 123531 123531 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 124373 124373 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold574 SAMTools SNP 126265 126265 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold574 SAMTools SNP 129555 129555 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.4%2C7.1e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C77:50 scaffold574 SAMTools SNP 132059 132059 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold574 SAMTools SNP 132102 132102 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold574 SAMTools SNP 132191 132191 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold574 SAMTools SNP 132203 132203 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold574 SAMTools SNP 132212 132212 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.3%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold574 SAMTools SNP 132392 132392 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C232:99 scaffold574 SAMTools SNP 132887 132887 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.41%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold574 SAMTools SNP 132916 132916 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.045%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold574 SAMTools SNP 133742 133742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold574 SAMTools SNP 134368 134368 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold574 SAMTools SNP 134613 134613 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C254:99 scaffold574 SAMTools SNP 134924 134924 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold574 SAMTools SNP 134951 134951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold574 SAMTools SNP 135374 135374 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 136751 136751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 136847 136847 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C116%2C53:99 scaffold574 SAMTools SNP 137430 137430 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.02%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C38:41 scaffold574 SAMTools SNP 138802 138802 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold574 SAMTools SNP 139091 139091 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold574 SAMTools SNP 139333 139333 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold574 SAMTools SNP 139482 139482 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold574 SAMTools SNP 140249 140249 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1.9e-16%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 140376 140376 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C7%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.45%2C2.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold574 SAMTools SNP 141026 141026 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold574 SAMTools SNP 141236 141236 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold574 SAMTools SNP 141357 141357 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.12%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C206:99 scaffold574 SAMTools SNP 141507 141507 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.33%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold574 SAMTools SNP 141963 141963 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C15%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold574 SAMTools SNP 142048 142048 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C23%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold574 SAMTools SNP 142260 142260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold574 SAMTools SNP 142974 142974 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C189:99 scaffold574 SAMTools SNP 143578 143578 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C195:31 scaffold574 SAMTools SNP 145622 145622 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C57%2C0:99 scaffold574 SAMTools SNP 145824 145824 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C4.8e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold574 SAMTools SNP 146177 146177 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C57%2C0:99 scaffold574 SAMTools SNP 147208 147208 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C8.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C229:99 scaffold574 SAMTools SNP 148227 148227 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold574 SAMTools SNP 148248 148248 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold574 SAMTools SNP 149654 149654 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold574 SAMTools SNP 149960 149960 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold574 SAMTools SNP 149987 149987 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold574 SAMTools SNP 150797 150797 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C155:99 scaffold574 SAMTools SNP 150827 150827 191 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C115:99 scaffold574 SAMTools SNP 150923 150923 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C33%2C0:63 scaffold574 SAMTools SNP 151385 151385 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold574 SAMTools SNP 152002 152002 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold574 SAMTools SNP 153774 153774 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold574 SAMTools SNP 157147 157147 55.8 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C24%2C86%2C0%2C83:10 scaffold574 SAMTools SNP 157814 157814 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold574 SAMTools SNP 158168 158168 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold574 SAMTools SNP 161873 161873 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold574 SAMTools SNP 162669 162669 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold574 SAMTools SNP 162972 162972 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold574 SAMTools SNP 163460 163460 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold574 SAMTools SNP 195131 195131 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold574 SAMTools SNP 195943 195943 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C5.7e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 197969 197969 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00083%2C0.00015%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold574 SAMTools SNP 197972 197972 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.03%2C0.002%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold574 SAMTools SNP 198012 198012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 201642 201642 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.24%2C0.00087%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold574 SAMTools SNP 201693 201693 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.7e-19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold574 SAMTools SNP 201754 201754 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold574 SAMTools SNP 201757 201757 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold574 SAMTools SNP 201916 201916 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold574 SAMTools SNP 201944 201944 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold574 SAMTools SNP 202818 202818 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 203875 203875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C13%3BMQ%3D49%3BFQ%3D174%3BPV4%3D0.53%2C0.095%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold574 SAMTools SNP 204107 204107 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D40%3BFQ%3D46%3BPV4%3D1%2C0.46%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C73:76 scaffold574 SAMTools SNP 204166 204166 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D40%3BFQ%3D70.2%3BPV4%3D0.19%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C105:99 scaffold574 SAMTools SNP 204547 204547 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 204622 204622 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C5%2C10%3BMQ%3D48%3BFQ%3D37%3BPV4%3D0.0015%2C2.8e-21%2C0.0076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold574 SAMTools SNP 204730 204730 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold574 SAMTools SNP 205221 205221 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C5%2C4%3BMQ%3D47%3BFQ%3D83%3BPV4%3D0.43%2C5.8e-06%2C0.1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold574 SAMTools SNP 205306 205306 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C14%3BMQ%3D49%3BFQ%3D58%3BPV4%3D1%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C230:88 scaffold574 SAMTools SNP 205344 205344 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C36%3BMQ%3D43%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C25:28 scaffold575 SAMTools SNP 11865 11865 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold575 SAMTools SNP 12236 12236 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold575 SAMTools SNP 16635 16635 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C27%2C66%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 16656 16656 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C4%2C52%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 18858 18858 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C53%2C4%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 19501 19501 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C22%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 20087 20087 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C25%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 20547 20547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold575 SAMTools SNP 20565 20565 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.3%2C0.003%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold575 SAMTools SNP 20730 20730 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold575 SAMTools SNP 20766 20766 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold575 SAMTools SNP 21092 21092 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold575 SAMTools SNP 21298 21298 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold575 SAMTools SNP 21331 21331 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold575 SAMTools SNP 21451 21451 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 23133 23133 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C9%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-05%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 23145 23145 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C36%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-05%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 25941 25941 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold575 SAMTools SNP 27688 27688 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C38:41 scaffold575 SAMTools SNP 27809 27809 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 28871 28871 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 28889 28889 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C30%2C0%2C34%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.23%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold575 SAMTools SNP 29680 29680 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold575 SAMTools SNP 29685 29685 186 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C47%2C23%2C204%2C0%2C201:45 scaffold575 SAMTools SNP 30603 30603 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C196%2C0:99 scaffold575 SAMTools SNP 30677 30677 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C111%2C0:99 scaffold575 SAMTools SNP 37574 37574 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold575 SAMTools SNP 37765 37765 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C125:31 scaffold575 SAMTools SNP 37772 37772 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C108:31 scaffold575 SAMTools SNP 37844 37844 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C2%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D0.091%2C0.48%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold575 SAMTools SNP 43952 43952 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold575 SAMTools SNP 47757 47757 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C91%2C9%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold575 SAMTools SNP 47796 47796 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C42%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 47811 47811 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C0%2C36%3BMQ%3D49%3BFQ%3D220%3BPV4%3D5.8e-09%2C0.048%2C1%2C4.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold575 SAMTools SNP 47829 47829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold575 SAMTools SNP 48273 48273 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C84%2C0:99 scaffold575 SAMTools SNP 48308 48308 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C15%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.084%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold575 SAMTools SNP 48359 48359 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C24%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D6.9e-05%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold575 SAMTools SNP 50173 50173 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 50592 50592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C35%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold575 SAMTools SNP 50645 50645 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold575 SAMTools SNP 50658 50658 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C23%2C28%3BMQ%3D50%3BFQ%3D-92%3BPV4%3D0.5%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C65%2C0:99 scaffold575 SAMTools SNP 50963 50963 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold575 SAMTools SNP 51011 51011 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold575 SAMTools SNP 51067 51067 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold575 SAMTools SNP 51314 51314 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 51800 51800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold575 SAMTools SNP 53408 53408 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C18%2C2%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 53442 53442 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C18%2C2%2C31%3BMQ%3D50%3BFQ%3D145%3BPV4%3D4e-18%2C0.43%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold575 SAMTools SNP 53620 53620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C104%3BMQ%3D50%3BFQ%3D-255%3BPV4%3D1%2C0.25%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C228%2C0:99 scaffold575 SAMTools SNP 54483 54483 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold575 SAMTools SNP 54487 54487 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold575 SAMTools SNP 54760 54760 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.58%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold575 SAMTools SNP 55060 55060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold575 SAMTools SNP 55100 55100 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold575 SAMTools SNP 55148 55148 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1.1e-09%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C238:54 scaffold575 SAMTools SNP 55829 55829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold575 SAMTools SNP 56338 56338 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold575 SAMTools SNP 56350 56350 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold575 SAMTools SNP 56362 56362 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold575 SAMTools SNP 89427 89427 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D72.6%3BPV4%3D0.1%2C3e-13%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C105:99 scaffold575 SAMTools SNP 96676 96676 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold575 SAMTools SNP 101407 101407 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.052%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold575 SAMTools SNP 103492 103492 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold575 SAMTools SNP 103866 103866 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold575 SAMTools SNP 103892 103892 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold575 SAMTools SNP 104543 104543 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold575 SAMTools SNP 104810 104810 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.056%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold575 SAMTools SNP 105549 105549 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold575 SAMTools SNP 106614 106614 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C1%2C0.21%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold575 SAMTools SNP 106621 106621 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D32%3BFQ%3D10.3%3BPV4%3D0.1%2C1%2C0.39%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C39:40 scaffold575 SAMTools SNP 108169 108169 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold575 SAMTools SNP 108170 108170 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold575 SAMTools SNP 108330 108330 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C201:99 scaffold575 SAMTools SNP 108689 108689 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C0.22%2C0.32%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C127:39 scaffold575 SAMTools SNP 108703 108703 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold575 SAMTools SNP 108736 108736 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold575 SAMTools SNP 108866 108866 5.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.8293%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D21%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C1:6 scaffold575 SAMTools SNP 108873 108873 7.34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D23%3BFQ%3D-26%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C1:5 scaffold575 SAMTools SNP 109120 109120 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold575 SAMTools SNP 109292 109292 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold575 SAMTools SNP 119951 119951 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C46%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold575 SAMTools SNP 120112 120112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold575 SAMTools SNP 120461 120461 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold575 SAMTools SNP 120561 120561 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C78%2C0:99 scaffold575 SAMTools SNP 120584 120584 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold575 SAMTools SNP 120983 120983 78 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D39%3BFQ%3D81%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C187:99 scaffold575 SAMTools SNP 121223 121223 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C3%3BMQ%3D42%3BFQ%3D81%3BPV4%3D1%2C0.48%2C0.39%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C108:99 scaffold575 SAMTools SNP 121791 121791 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold575 SAMTools SNP 137077 137077 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold575 SAMTools SNP 139761 139761 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold575 SAMTools SNP 143388 143388 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold576 SAMTools SNP 6893 6893 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.47%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C78:31 scaffold576 SAMTools SNP 8259 8259 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D48%3BFQ%3D60%3BPV4%3D1%2C1%2C0.041%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold576 SAMTools SNP 8941 8941 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D23%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold576 SAMTools SNP 9154 9154 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D15%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C33%2C0:34 scaffold576 SAMTools SNP 9279 9279 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold576 SAMTools SNP 46451 46451 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold576 SAMTools SNP 46458 46458 17.1 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C23%2C20%2C47%2C0%2C44:6 scaffold576 SAMTools SNP 47213 47213 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.033%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C101:70 scaffold576 SAMTools SNP 47230 47230 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 47237 47237 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C15%2C0:27 scaffold576 SAMTools SNP 47250 47250 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold576 SAMTools SNP 47270 47270 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.066%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold576 SAMTools SNP 47312 47312 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.14%2C0.37%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold576 SAMTools SNP 47853 47853 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold576 SAMTools SNP 47859 47859 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold576 SAMTools SNP 49132 49132 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold576 SAMTools SNP 49141 49141 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold576 SAMTools SNP 50069 50069 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C29%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold576 SAMTools SNP 50440 50440 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C5%2C21%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold576 SAMTools SNP 50818 50818 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 50842 50842 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold576 SAMTools SNP 57539 57539 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold576 SAMTools SNP 57572 57572 63.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold576 SAMTools SNP 58076 58076 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 67901 67901 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C0%2C70%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold576 SAMTools SNP 71511 71511 6.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C64%2C0%3BMQ%3D7%3BFQ%3D-205%3BPV4%3D1%2C0.34%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C178%2C0:51 scaffold576 SAMTools SNP 71885 71885 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C0%3BMQ%3D4%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C255%2C0:75 scaffold576 SAMTools SNP 72960 72960 7.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D7%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C181%2C0:54 scaffold576 SAMTools SNP 73045 73045 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C0%3BMQ%3D49%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold576 SAMTools SNP 73083 73083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C0%3BMQ%3D49%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold576 SAMTools SNP 88709 88709 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold576 SAMTools SNP 90311 90311 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C109%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.32%2C9.7e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C239:99 scaffold576 SAMTools SNP 91998 91998 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C14%2C12%3BMQ%3D49%3BFQ%3D93%3BPV4%3D0.057%2C7.9e-28%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold576 SAMTools SNP 92061 92061 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C20%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C2.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C213:81 scaffold576 SAMTools SNP 92177 92177 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold576 SAMTools SNP 93858 93858 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold576 SAMTools SNP 93894 93894 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C215:99 scaffold576 SAMTools SNP 94854 94854 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C51%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold576 SAMTools SNP 94921 94921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold576 SAMTools SNP 95028 95028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C75%2C23%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D2.6e-05%2C0.4%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold576 SAMTools SNP 96046 96046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C46%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold576 SAMTools SNP 96087 96087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C80%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D4.2e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold576 SAMTools SNP 96482 96482 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold576 SAMTools SNP 96554 96554 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C3%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold576 SAMTools SNP 96788 96788 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C6%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C2e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold576 SAMTools SNP 97444 97444 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C26%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold576 SAMTools SNP 97459 97459 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.029%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold576 SAMTools SNP 97522 97522 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.26%2C0.13%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold576 SAMTools SNP 97543 97543 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.044%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold576 SAMTools SNP 97603 97603 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 97860 97860 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C0%2C107%3BMQ%3D38%3BFQ%3D146%3BPV4%3D2e-20%2C0.0081%2C4.7e-12%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold576 SAMTools SNP 97943 97943 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C19%2C69%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 97993 97993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C286%2C10%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.073%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 100866 100866 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C75%2C7%2C13%3BMQ%3D48%3BFQ%3D124%3BPV4%3D0.0035%2C1.9e-09%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold576 SAMTools SNP 100916 100916 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C145%2C0%2C139%3BMQ%3D49%3BFQ%3D113%3BPV4%3D1%2C5e-223%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold576 SAMTools SNP 113959 113959 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold576 SAMTools SNP 115002 115002 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.24%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold576 SAMTools SNP 116214 116214 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.59%2C0.18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold576 SAMTools SNP 116354 116354 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C153:52 scaffold576 SAMTools SNP 116622 116622 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold576 SAMTools SNP 116761 116761 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 117526 117526 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold576 SAMTools SNP 121298 121298 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold576 SAMTools SNP 121650 121650 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold576 SAMTools SNP 123385 123385 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.43%2C0.023%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C136:61 scaffold576 SAMTools SNP 123453 123453 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold576 SAMTools SNP 123592 123592 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 166666 166666 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold576 SAMTools SNP 168726 168726 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold576 SAMTools SNP 169062 169062 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold576 SAMTools SNP 169374 169374 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold576 SAMTools SNP 169788 169788 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C82:53 scaffold576 SAMTools SNP 169968 169968 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold576 SAMTools SNP 170571 170571 85 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold576 SAMTools SNP 172238 172238 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold576 SAMTools SNP 176041 176041 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 176543 176543 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold576 SAMTools SNP 176559 176559 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold576 SAMTools SNP 176616 176616 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 177039 177039 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 177083 177083 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 178104 178104 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.1e-08%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C177:48 scaffold576 SAMTools SNP 178188 178188 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold576 SAMTools SNP 178815 178815 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.36%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold576 SAMTools SNP 178827 178827 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold576 SAMTools SNP 179072 179072 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold576 SAMTools SNP 179081 179081 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.25%2C0.00044%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold576 SAMTools SNP 179090 179090 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 179274 179274 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold576 SAMTools SNP 179480 179480 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold576 SAMTools SNP 180335 180335 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold576 SAMTools SNP 180551 180551 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold576 SAMTools SNP 180561 180561 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold576 SAMTools SNP 180578 180578 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold576 SAMTools SNP 182061 182061 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 182723 182723 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold576 SAMTools SNP 182873 182873 45.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold576 SAMTools SNP 188967 188967 7.59 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C31%2C25%2C37%2C0%2C34:7 scaffold576 SAMTools SNP 189537 189537 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D41%2C6%2C6%2C16%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1.4e-06%2C8e-70%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold576 SAMTools SNP 189558 189558 12 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold576 SAMTools SNP 192030 192030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C0%2C77%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 192053 192053 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 192609 192609 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C28%2C20%2C15%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.83%2C8.2e-85%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold576 SAMTools SNP 192765 192765 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D172%2C47%2C108%2C19%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.16%2C7e-231%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold576 SAMTools SNP 192960 192960 13 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C11%2C5%2C43%2C0%2C40:9 scaffold576 SAMTools SNP 193331 193331 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C68%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C223%2C0:99 scaffold576 SAMTools SNP 193739 193739 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold576 SAMTools SNP 203225 203225 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold576 SAMTools SNP 209164 209164 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold576 SAMTools SNP 209516 209516 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C5%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 209568 209568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold576 SAMTools SNP 211142 211142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C53%2C42%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C3e-13%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 211571 211571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C48%2C28%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 211614 211614 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C57%2C9%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.21%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 211629 211629 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C69%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold576 SAMTools SNP 211847 211847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C17%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold576 SAMTools SNP 211877 211877 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold576 SAMTools SNP 212192 212192 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold576 SAMTools SNP 212225 212225 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C8%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold576 SAMTools SNP 212237 212237 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C16%2C17%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold576 SAMTools SNP 212299 212299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C20%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-08%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 213450 213450 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D0.32%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C43%2C0:83 scaffold576 SAMTools SNP 214384 214384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold576 SAMTools SNP 214390 214390 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold576 SAMTools SNP 214432 214432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C37%2C5%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D0.14%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold576 SAMTools SNP 214444 214444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C6%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold576 SAMTools SNP 216018 216018 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C37%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold576 SAMTools SNP 216075 216075 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold576 SAMTools SNP 217095 217095 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold576 SAMTools SNP 222861 222861 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold576 SAMTools SNP 222885 222885 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 222933 222933 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold576 SAMTools SNP 223421 223421 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold576 SAMTools SNP 223469 223469 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold576 SAMTools SNP 223475 223475 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold576 SAMTools SNP 223855 223855 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold576 SAMTools SNP 224501 224501 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold576 SAMTools SNP 224504 224504 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold576 SAMTools SNP 224564 224564 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold576 SAMTools SNP 224812 224812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold576 SAMTools SNP 224893 224893 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold576 SAMTools SNP 224905 224905 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.42%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold576 SAMTools SNP 225178 225178 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold576 SAMTools SNP 225202 225202 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold576 SAMTools SNP 225223 225223 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold576 SAMTools SNP 225644 225644 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C4%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.014%2C0.45%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold576 SAMTools SNP 226021 226021 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold576 SAMTools SNP 226072 226072 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold576 SAMTools SNP 226153 226153 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold576 SAMTools SNP 226439 226439 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold576 SAMTools SNP 226520 226520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 226949 226949 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold576 SAMTools SNP 226958 226958 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.12%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold576 SAMTools SNP 227498 227498 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 227528 227528 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold576 SAMTools SNP 227594 227594 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0151%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold576 SAMTools SNP 227618 227618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold576 SAMTools SNP 229299 229299 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 229303 229303 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 229387 229387 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 229840 229840 9.49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold576 SAMTools SNP 229849 229849 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 231005 231005 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 231245 231245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold576 SAMTools SNP 231701 231701 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold576 SAMTools SNP 231725 231725 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold576 SAMTools SNP 231731 231731 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold576 SAMTools SNP 232825 232825 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.17%2C0.0027%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold576 SAMTools SNP 233416 233416 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C22%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold576 SAMTools SNP 233452 233452 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold576 SAMTools SNP 233896 233896 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 233944 233944 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C213:99 scaffold576 SAMTools SNP 233965 233965 223 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C240:99 scaffold576 SAMTools SNP 235681 235681 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold576 SAMTools SNP 235709 235709 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold576 SAMTools SNP 254649 254649 78.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold576 SAMTools SNP 255267 255267 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C19:22 scaffold576 SAMTools SNP 255454 255454 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C41%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold576 SAMTools SNP 258817 258817 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C93:51 scaffold576 SAMTools SNP 259930 259930 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C0.055%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold576 SAMTools SNP 260074 260074 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold576 SAMTools SNP 263466 263466 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C22%2C31%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 263535 263535 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C0%2C15%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.3%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold576 SAMTools SNP 263536 263536 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C0%2C16%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.31%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold576 SAMTools SNP 266204 266204 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1035%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C45%2C10%3BMQ%3D50%3BFQ%3D-104%3BPV4%3D0.041%2C1.2e-20%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C77%2C0:99 scaffold576 SAMTools SNP 266558 266558 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 266591 266591 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 266612 266612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C154%2C13%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-07%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 266905 266905 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C0%2C16%3BMQ%3D50%3BFQ%3D118%3BPV4%3D6e-07%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold576 SAMTools SNP 266950 266950 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C104%2C20:99 scaffold576 SAMTools SNP 267458 267458 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold576 SAMTools SNP 267476 267476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold576 SAMTools SNP 267739 267739 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C34%2C101%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.061%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 267988 267988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C123%2C13%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 267994 267994 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C123%2C13%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 268023 268023 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C24%2C3%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-11%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 268047 268047 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C19%2C3%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-05%2C1%2C1%2C7.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 268335 268335 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C33%2C49%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 269740 269740 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C248%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 269818 269818 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C105%2C42%2C121%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C5.3e-249%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold576 SAMTools SNP 269869 269869 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C40%2C67%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C2.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 270978 270978 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.046%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold576 SAMTools SNP 270981 270981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold576 SAMTools SNP 270984 270984 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold576 SAMTools SNP 275041 275041 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D56%3BPV4%3D2.6e-05%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold576 SAMTools SNP 276073 276073 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold576 SAMTools SNP 276367 276367 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 276740 276740 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.017%2C2.5e-06%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold576 SAMTools SNP 277843 277843 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.058%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold576 SAMTools SNP 282012 282012 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold576 SAMTools SNP 283532 283532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold576 SAMTools SNP 283539 283539 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 283718 283718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C23%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold576 SAMTools SNP 287670 287670 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C169:99 scaffold576 SAMTools SNP 288678 288678 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold576 SAMTools SNP 289494 289494 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold576 SAMTools SNP 289713 289713 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold576 SAMTools SNP 290313 290313 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 295643 295643 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 309559 309559 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 312930 312930 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C6.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C66:69 scaffold576 SAMTools SNP 313040 313040 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C41:44 scaffold576 SAMTools SNP 315370 315370 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold576 SAMTools SNP 315617 315617 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.036%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C95:54 scaffold576 SAMTools SNP 317891 317891 77.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold576 SAMTools SNP 318002 318002 31.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold576 SAMTools SNP 333938 333938 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold576 SAMTools SNP 333945 333945 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold576 SAMTools SNP 337727 337727 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 337755 337755 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold576 SAMTools SNP 341809 341809 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 342092 342092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 342642 342642 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold576 SAMTools SNP 342646 342646 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold576 SAMTools SNP 342662 342662 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold576 SAMTools SNP 343120 343120 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold576 SAMTools SNP 343385 343385 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 344006 344006 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold576 SAMTools SNP 346898 346898 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 346940 346940 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 347281 347281 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 354174 354174 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold576 SAMTools SNP 354214 354214 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 354690 354690 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold576 SAMTools SNP 354732 354732 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.28%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold576 SAMTools SNP 356597 356597 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold576 SAMTools SNP 356642 356642 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold576 SAMTools SNP 356809 356809 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold576 SAMTools SNP 356840 356840 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 356855 356855 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold576 SAMTools SNP 357025 357025 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold576 SAMTools SNP 357122 357122 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold576 SAMTools SNP 357139 357139 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 357157 357157 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold576 SAMTools SNP 357552 357552 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold576 SAMTools SNP 357768 357768 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C109:88 scaffold576 SAMTools SNP 357948 357948 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold576 SAMTools SNP 358740 358740 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold576 SAMTools SNP 359319 359319 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 359502 359502 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold576 SAMTools SNP 359529 359529 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold576 SAMTools SNP 359717 359717 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.31%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold576 SAMTools SNP 359834 359834 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.44%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C122:72 scaffold576 SAMTools SNP 360257 360257 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold576 SAMTools SNP 360341 360341 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold576 SAMTools SNP 360407 360407 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 360570 360570 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold576 SAMTools SNP 360582 360582 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 361078 361078 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold576 SAMTools SNP 362411 362411 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C113:99 scaffold576 SAMTools SNP 362436 362436 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold576 SAMTools SNP 362865 362865 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold576 SAMTools SNP 363299 363299 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 364215 364215 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold576 SAMTools SNP 364966 364966 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold576 SAMTools SNP 365068 365068 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold576 SAMTools SNP 365107 365107 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 365653 365653 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold576 SAMTools SNP 366179 366179 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold576 SAMTools SNP 366657 366657 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold576 SAMTools SNP 366951 366951 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C18%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold576 SAMTools SNP 366960 366960 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.28%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold576 SAMTools SNP 366996 366996 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.27%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold576 SAMTools SNP 367736 367736 11.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C7:10 scaffold576 SAMTools SNP 368120 368120 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.29%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold576 SAMTools SNP 368150 368150 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C221:99 scaffold576 SAMTools SNP 368174 368174 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 368630 368630 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold576 SAMTools SNP 369038 369038 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold576 SAMTools SNP 369104 369104 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 369347 369347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C57%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold576 SAMTools SNP 369407 369407 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.53%2C0.014%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold576 SAMTools SNP 369437 369437 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold576 SAMTools SNP 369757 369757 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold576 SAMTools SNP 370120 370120 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.58%2C0.47%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold576 SAMTools SNP 370174 370174 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 370210 370210 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C22%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 370437 370437 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D118%3BPV4%3D2.7e-05%2C0.25%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold576 SAMTools SNP 370476 370476 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 370506 370506 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold576 SAMTools SNP 370719 370719 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4.9e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C203:51 scaffold576 SAMTools SNP 370793 370793 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold576 SAMTools SNP 371107 371107 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 371131 371131 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 371248 371248 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.58%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold576 SAMTools SNP 371320 371320 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold576 SAMTools SNP 371508 371508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold576 SAMTools SNP 371514 371514 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold576 SAMTools SNP 371553 371553 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C39%2C0:75 scaffold576 SAMTools SNP 371578 371578 88 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C57%2C0:99 scaffold576 SAMTools SNP 371643 371643 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold576 SAMTools SNP 372386 372386 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold576 SAMTools SNP 372401 372401 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold576 SAMTools SNP 372414 372414 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold576 SAMTools SNP 372425 372425 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold576 SAMTools SNP 372676 372676 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C192:99 scaffold576 SAMTools SNP 372685 372685 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold576 SAMTools SNP 373267 373267 202 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C11%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D8.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold576 SAMTools SNP 378262 378262 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C87%2C0:99 scaffold576 SAMTools SNP 378702 378702 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C186:47 scaffold576 SAMTools SNP 378897 378897 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold576 SAMTools SNP 386277 386277 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold576 SAMTools SNP 386313 386313 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold576 SAMTools SNP 386322 386322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 386379 386379 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 389537 389537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.013%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 390672 390672 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold576 SAMTools SNP 390728 390728 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C21%2C0:39 scaffold576 SAMTools SNP 390764 390764 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 391915 391915 86.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold576 SAMTools SNP 393325 393325 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C6.2e-14%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C172:42 scaffold576 SAMTools SNP 393534 393534 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold576 SAMTools SNP 394664 394664 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold576 SAMTools SNP 396452 396452 21.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold576 SAMTools SNP 396864 396864 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.046%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold576 SAMTools SNP 397032 397032 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.2%2C6.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold576 SAMTools SNP 397560 397560 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C5.4e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C242:97 scaffold576 SAMTools SNP 397566 397566 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C2.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C241:99 scaffold576 SAMTools SNP 398217 398217 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold576 SAMTools SNP 405826 405826 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold576 SAMTools SNP 405846 405846 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 411741 411741 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 412198 412198 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold576 SAMTools SNP 414471 414471 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C172:99 scaffold576 SAMTools SNP 414492 414492 222 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0%2C251%2C43%2C248:99 scaffold576 SAMTools SNP 414798 414798 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C7.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 415246 415246 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C17%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 415334 415334 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C14%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 415543 415543 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold576 SAMTools SNP 415598 415598 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold576 SAMTools SNP 416136 416136 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 416250 416250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold576 SAMTools SNP 416646 416646 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold576 SAMTools SNP 416727 416727 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C29%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold576 SAMTools SNP 417284 417284 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 417575 417575 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold576 SAMTools SNP 417629 417629 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 417765 417765 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold576 SAMTools SNP 417787 417787 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold576 SAMTools SNP 417791 417791 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold576 SAMTools SNP 418163 418163 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold576 SAMTools SNP 418175 418175 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold576 SAMTools SNP 418197 418197 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold576 SAMTools SNP 418219 418219 105 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C13%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C224:99 scaffold576 SAMTools SNP 418557 418557 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold576 SAMTools SNP 418675 418675 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold576 SAMTools SNP 419717 419717 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 419749 419749 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold576 SAMTools SNP 419817 419817 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 420145 420145 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold576 SAMTools SNP 420160 420160 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.14%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C169:60 scaffold576 SAMTools SNP 420183 420183 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 420297 420297 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold576 SAMTools SNP 420312 420312 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold576 SAMTools SNP 420547 420547 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C5%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C228:91 scaffold576 SAMTools SNP 420592 420592 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold576 SAMTools SNP 420751 420751 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold576 SAMTools SNP 421690 421690 3.02 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C26%2C23%2C30%2C0%2C27:4 scaffold576 SAMTools SNP 421771 421771 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C9%2C67%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.12%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold576 SAMTools SNP 422452 422452 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C143%2C174%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.6e-19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 422483 422483 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D513%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C156%2C186%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-14%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 422728 422728 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C101%2C15%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1.5e-06%2C0.025%2C1%2C3.1e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold576 SAMTools SNP 423004 423004 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 423046 423046 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.61%2C0.45%2C1%2C6.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold576 SAMTools SNP 423049 423049 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold576 SAMTools SNP 423164 423164 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold576 SAMTools SNP 423490 423490 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 423556 423556 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C132%2C0:99 scaffold576 SAMTools SNP 423663 423663 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D21%3BPV4%3D2.9e-05%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold576 SAMTools SNP 423807 423807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C47%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold576 SAMTools SNP 424111 424111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C30%2C27%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 424242 424242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C40%2C27%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 424302 424302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 424313 424313 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C33%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C7.1e-23%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 424350 424350 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 424355 424355 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C0%2C12%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold576 SAMTools SNP 424358 424358 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold576 SAMTools SNP 426253 426253 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 426300 426300 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 462145 462145 40 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold576 SAMTools SNP 463295 463295 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 463518 463518 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 463545 463545 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold576 SAMTools SNP 464016 464016 92.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold576 SAMTools SNP 464165 464165 92.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold576 SAMTools SNP 464256 464256 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold576 SAMTools SNP 466497 466497 20.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold576 SAMTools SNP 477052 477052 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.15%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold576 SAMTools SNP 477100 477100 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold576 SAMTools SNP 477234 477234 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.49%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold576 SAMTools SNP 481428 481428 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold576 SAMTools SNP 481486 481486 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold576 SAMTools SNP 481658 481658 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C194:31 scaffold576 SAMTools SNP 484716 484716 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 485002 485002 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold576 SAMTools SNP 491500 491500 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold576 SAMTools SNP 499022 499022 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold576 SAMTools SNP 521099 521099 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.018%2C7.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold576 SAMTools SNP 521244 521244 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C10%2C6%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0063%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C210:28 scaffold576 SAMTools SNP 521728 521728 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.0017%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C149:99 scaffold576 SAMTools SNP 527638 527638 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C0.0018%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C35:38 scaffold576 SAMTools SNP 528050 528050 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C62%2C54%2C18%3BMQ%3D50%3BFQ%3D119%3BPV4%3D7e-05%2C4e-88%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold576 SAMTools SNP 528059 528059 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C29%2C44%2C62%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.00086%2C4e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold576 SAMTools SNP 528311 528311 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.56%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold576 SAMTools SNP 528454 528454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold576 SAMTools SNP 528472 528472 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold576 SAMTools SNP 528917 528917 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C122:46 scaffold576 SAMTools SNP 529090 529090 67 . . REF=A;ALT=T,C,G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C30%3BMQ%3D50%3BFQ%3D-160;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C255%2C122%2C231%2C0%2C89%2C220%2C253%2C212%2C217:99 scaffold576 SAMTools SNP 529371 529371 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 529709 529709 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 529851 529851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold576 SAMTools SNP 529861 529861 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold576 SAMTools SNP 531266 531266 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 533622 533622 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold576 SAMTools SNP 533969 533969 86.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold576 SAMTools SNP 534319 534319 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold576 SAMTools SNP 534361 534361 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C27%2C0:51 scaffold576 SAMTools SNP 534620 534620 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C86%2C1%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 542927 542927 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold576 SAMTools SNP 542984 542984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 543348 543348 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C14%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 543380 543380 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C69%2C3%2C17%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.27%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold576 SAMTools SNP 543398 543398 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C44%2C4%2C15%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.073%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold576 SAMTools SNP 543417 543417 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C27%2C29%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold576 SAMTools SNP 543838 543838 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C24%2C19%2C4%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold576 SAMTools SNP 543853 543853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 543873 543873 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C52%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 544058 544058 167 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C57%2C0%2C199%2C43%2C196:99 scaffold576 SAMTools SNP 544271 544271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C10%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold576 SAMTools SNP 549764 549764 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C163%2C0:99 scaffold576 SAMTools SNP 549858 549858 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 551355 551355 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C79%2C10%2C7%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.11%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold576 SAMTools SNP 551364 551364 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C26%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 551398 551398 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C27%3BMQ%3D49%3BFQ%3D-82%3BPV4%3D1%2C0.41%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold576 SAMTools SNP 552020 552020 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C14%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.018%2C0.29%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 552077 552077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold576 SAMTools SNP 552393 552393 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C19%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C219:99 scaffold576 SAMTools SNP 552534 552534 62.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C15%2C0:27 scaffold576 SAMTools SNP 552579 552579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold576 SAMTools SNP 552597 552597 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold576 SAMTools SNP 552850 552850 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold576 SAMTools SNP 553145 553145 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C254:99 scaffold576 SAMTools SNP 554246 554246 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold576 SAMTools SNP 554247 554247 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold576 SAMTools SNP 557161 557161 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3e-05%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold576 SAMTools SNP 557335 557335 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C54%2C0:99 scaffold576 SAMTools SNP 558354 558354 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.035%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold576 SAMTools SNP 558413 558413 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C211%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 558771 558771 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 558819 558819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C111%2C60%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C4.9e-98%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 558858 558858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 559289 559289 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C66%2C45%3BMQ%3D50%3BFQ%3D190%3BPV4%3D4.3e-09%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold576 SAMTools SNP 559747 559747 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 560308 560308 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold576 SAMTools SNP 560311 560311 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold576 SAMTools SNP 560344 560344 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold576 SAMTools SNP 560525 560525 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C10%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold576 SAMTools SNP 560811 560811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold576 SAMTools SNP 560856 560856 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C29%2C29%3BMQ%3D50%3BFQ%3D164%3BPV4%3D2.6e-06%2C4.1e-42%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C196:99 scaffold576 SAMTools SNP 560979 560979 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D245%2C38%2C242%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 561990 561990 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold576 SAMTools SNP 562722 562722 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C4%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.47%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold576 SAMTools SNP 562748 562748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold576 SAMTools SNP 562752 562752 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold576 SAMTools SNP 562773 562773 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C2%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.068%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold576 SAMTools SNP 563024 563024 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold576 SAMTools SNP 563026 563026 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.13%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C246:99 scaffold576 SAMTools SNP 563435 563435 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 563533 563533 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold576 SAMTools SNP 563726 563726 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C27%2C24%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 563905 563905 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C31%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 563938 563938 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C22%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 565697 565697 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D218%2C20%2C119%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold576 SAMTools SNP 566016 566016 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C108%2C105%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D9.5e-11%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold576 SAMTools SNP 566429 566429 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.00074%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C222:99 scaffold576 SAMTools SNP 566441 566441 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C211:99 scaffold576 SAMTools SNP 567220 567220 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold576 SAMTools SNP 567259 567259 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold577 SAMTools SNP 1564 1564 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold577 SAMTools SNP 1622 1622 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold577 SAMTools SNP 63809 63809 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold577 SAMTools SNP 78778 78778 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold577 SAMTools SNP 78819 78819 142 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C39%2C18%2C170%2C0%2C163:39 scaffold577 SAMTools SNP 81201 81201 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold577 SAMTools SNP 81250 81250 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold577 SAMTools SNP 81299 81299 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold577 SAMTools SNP 81860 81860 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold577 SAMTools SNP 81902 81902 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold577 SAMTools SNP 81935 81935 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold577 SAMTools SNP 82739 82739 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold577 SAMTools SNP 82753 82753 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold577 SAMTools SNP 82804 82804 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold577 SAMTools SNP 83446 83446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold577 SAMTools SNP 84399 84399 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.2%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C80:58 scaffold577 SAMTools SNP 85900 85900 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C21%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.22%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold577 SAMTools SNP 87645 87645 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C202:99 scaffold577 SAMTools SNP 87668 87668 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.22%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C118:99 scaffold577 SAMTools SNP 87736 87736 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C191:99 scaffold577 SAMTools SNP 88267 88267 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold577 SAMTools SNP 88329 88329 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C197:68 scaffold577 SAMTools SNP 89070 89070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C3%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold577 SAMTools SNP 89139 89139 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C65%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold577 SAMTools SNP 89184 89184 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C47%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold577 SAMTools SNP 93531 93531 25.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold577 SAMTools SNP 95991 95991 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C169:49 scaffold577 SAMTools SNP 96814 96814 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C31%2C6%3BMQ%3D50%3BFQ%3D-105%3BPV4%3D0.18%2C9.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C78%2C0:99 scaffold577 SAMTools SNP 96839 96839 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.27%2C8.5e-19%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold577 SAMTools SNP 96865 96865 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0072%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold577 SAMTools SNP 125515 125515 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold577 SAMTools SNP 126838 126838 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold577 SAMTools SNP 128929 128929 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C0%2C14%3BMQ%3D40%3BFQ%3D47%3BPV4%3D4.8e-06%2C9.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold577 SAMTools SNP 128932 128932 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C32%2C5%3BMQ%3D40%3BFQ%3D139%3BPV4%3D4.8e-13%2C1%2C4.4e-08%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold577 SAMTools SNP 128937 128937 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C27%2C4%3BMQ%3D40%3BFQ%3D196%3BPV4%3D3.6e-13%2C1%2C1.1e-11%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C225:99 scaffold577 SAMTools SNP 130682 130682 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold577 SAMTools SNP 133381 133381 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C119%2C25%2C69%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.11%2C1%2C0.00019%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold577 SAMTools SNP 133395 133395 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C165%2C9%2C32%3BMQ%3D41%3BFQ%3D26%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold577 SAMTools SNP 135140 135140 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D44%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold577 SAMTools SNP 151423 151423 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C86%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold577 SAMTools SNP 166762 166762 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D1%2C0.00061%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C138:28 scaffold577 SAMTools SNP 175750 175750 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold577 SAMTools SNP 175822 175822 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C15%3BMQ%3D41%3BFQ%3D13.2%3BPV4%3D1%2C1.1e-22%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C215:42 scaffold577 SAMTools SNP 184071 184071 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 22383 22383 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 22834 22834 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 85857 85857 25.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold578 SAMTools SNP 87406 87406 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D845%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C50%2C789%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 89741 89741 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C44%2C0%2C28%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.00012%2C1%2C1%2C4.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold578 SAMTools SNP 96915 96915 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold578 SAMTools SNP 97103 97103 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C19%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1.3e-05%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold578 SAMTools SNP 102769 102769 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 116551 116551 3.55 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C21%2C18%2C31%2C0%2C28:4 scaffold578 SAMTools SNP 118395 118395 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C81%2C19%3BMQ%3D50%3BFQ%3D-281%3BPV4%3D0.2%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C254%2C0:99 scaffold578 SAMTools SNP 118428 118428 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C198%2C27%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 118908 118908 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 119422 119422 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D470%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold578 SAMTools SNP 138424 138424 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C87%2C0:99 scaffold578 SAMTools SNP 138557 138557 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold578 SAMTools SNP 138624 138624 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0394%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C0.0017%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C21:24 scaffold578 SAMTools SNP 138629 138629 35.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold578 SAMTools SNP 138739 138739 62.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold578 SAMTools SNP 138850 138850 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C217%2C0:99 scaffold578 SAMTools SNP 139113 139113 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C69%2C0:99 scaffold578 SAMTools SNP 142069 142069 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold578 SAMTools SNP 142470 142470 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold578 SAMTools SNP 144744 144744 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C75%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 145618 145618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold578 SAMTools SNP 147462 147462 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold578 SAMTools SNP 147794 147794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C115%2C250%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.32%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 148994 148994 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C187%2C262%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 149024 149024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D478%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C265%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 150766 150766 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 151621 151621 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 152459 152459 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C255%2C0:99 scaffold578 SAMTools SNP 153224 153224 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold578 SAMTools SNP 156595 156595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold578 SAMTools SNP 156613 156613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C36%3BMQ%3D48%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold578 SAMTools SNP 157492 157492 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold578 SAMTools SNP 157514 157514 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D25%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0083%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold578 SAMTools SNP 167306 167306 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold578 SAMTools SNP 171398 171398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 171695 171695 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C27%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold578 SAMTools SNP 171715 171715 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C26%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold578 SAMTools SNP 172795 172795 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold578 SAMTools SNP 172825 172825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold578 SAMTools SNP 175029 175029 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold578 SAMTools SNP 175071 175071 196 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C47%2C20%2C212%2C0%2C209:51 scaffold578 SAMTools SNP 175590 175590 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C6%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold578 SAMTools SNP 175612 175612 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C2%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold578 SAMTools SNP 175877 175877 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C64%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold578 SAMTools SNP 175889 175889 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C64%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold578 SAMTools SNP 176634 176634 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold578 SAMTools SNP 177113 177113 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold578 SAMTools SNP 177125 177125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold578 SAMTools SNP 177299 177299 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 177306 177306 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 177490 177490 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 177657 177657 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 180066 180066 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 181021 181021 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.27%2C0.00013%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold578 SAMTools SNP 181058 181058 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold578 SAMTools SNP 181074 181074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold578 SAMTools SNP 181422 181422 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 181644 181644 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 181962 181962 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold578 SAMTools SNP 181965 181965 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C15:18 scaffold578 SAMTools SNP 182049 182049 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold578 SAMTools SNP 182085 182085 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold578 SAMTools SNP 182384 182384 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 184936 184936 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold578 SAMTools SNP 184960 184960 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C30%2C0:57 scaffold578 SAMTools SNP 185115 185115 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold578 SAMTools SNP 185157 185157 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold578 SAMTools SNP 185777 185777 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold578 SAMTools SNP 185780 185780 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 188884 188884 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 189515 189515 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C225%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 191270 191270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C54%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold578 SAMTools SNP 191967 191967 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C54%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold578 SAMTools SNP 192322 192322 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold578 SAMTools SNP 192326 192326 63.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C30%2C24%2C94%2C0%2C91:10 scaffold578 SAMTools SNP 192361 192361 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold578 SAMTools SNP 192826 192826 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.28%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C241:30 scaffold578 SAMTools SNP 192827 192827 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold578 SAMTools SNP 194285 194285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C118%2C86%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 194431 194431 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C125%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 196210 196210 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C31%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold578 SAMTools SNP 196265 196265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C8%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold578 SAMTools SNP 209078 209078 22.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold578 SAMTools SNP 209169 209169 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold578 SAMTools SNP 209172 209172 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.057%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold578 SAMTools SNP 210350 210350 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold578 SAMTools SNP 210383 210383 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 211557 211557 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.5%2C7.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold578 SAMTools SNP 212777 212777 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold578 SAMTools SNP 218150 218150 8.22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold578 SAMTools SNP 224424 224424 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold578 SAMTools SNP 226562 226562 73 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C62%2C15%2C1%3BMQ%3D50%3BFQ%3D76%3BPV4%3D3.4e-06%2C0.00035%2C1%2C5.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold578 SAMTools SNP 226563 226563 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C59%2C14%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1.2e-05%2C0.45%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold578 SAMTools SNP 230003 230003 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold578 SAMTools SNP 232139 232139 48.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold578 SAMTools SNP 233834 233834 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D747%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C643%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 234250 234250 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold578 SAMTools SNP 234819 234819 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D776%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C208%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C255%2C0:99 scaffold578 SAMTools SNP 235215 235215 93 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C56%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C138%2C0%2C106%2C13%2C76:99 scaffold578 SAMTools SNP 235221 235221 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C177%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 235561 235561 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C63%2C0:99 scaffold578 SAMTools SNP 235689 235689 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C27%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.00088%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C28%2C0:53 scaffold578 SAMTools SNP 236151 236151 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold578 SAMTools SNP 236213 236213 82.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold578 SAMTools SNP 236924 236924 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C179%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C255%2C0:99 scaffold578 SAMTools SNP 236996 236996 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold578 SAMTools SNP 237007 237007 41.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold578 SAMTools SNP 237516 237516 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold578 SAMTools SNP 237534 237534 8.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold578 SAMTools SNP 238273 238273 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold578 SAMTools SNP 238488 238488 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D0.059%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold578 SAMTools SNP 246365 246365 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold578 SAMTools SNP 246426 246426 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C78%2C0:99 scaffold578 SAMTools SNP 246478 246478 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C4%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C175%2C0:99 scaffold578 SAMTools SNP 246621 246621 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C40%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 247214 247214 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold578 SAMTools SNP 247365 247365 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold578 SAMTools SNP 250152 250152 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C15%2C0:27 scaffold578 SAMTools SNP 250223 250223 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold578 SAMTools SNP 251873 251873 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold578 SAMTools SNP 257813 257813 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold578 SAMTools SNP 258779 258779 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold578 SAMTools SNP 261236 261236 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold578 SAMTools SNP 261316 261316 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 261636 261636 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 261759 261759 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 262143 262143 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold578 SAMTools SNP 262263 262263 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 262268 262268 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold578 SAMTools SNP 262461 262461 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 278417 278417 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold578 SAMTools SNP 279943 279943 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C39%2C0:75 scaffold578 SAMTools SNP 280287 280287 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold578 SAMTools SNP 280291 280291 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold578 SAMTools SNP 280607 280607 92.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold578 SAMTools SNP 283637 283637 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold578 SAMTools SNP 283656 283656 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 283684 283684 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold578 SAMTools SNP 284066 284066 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold578 SAMTools SNP 284343 284343 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold578 SAMTools SNP 284361 284361 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 284403 284403 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold578 SAMTools SNP 284992 284992 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 292059 292059 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 293366 293366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C22%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold578 SAMTools SNP 293381 293381 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C15%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C0.36%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold578 SAMTools SNP 293387 293387 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C24%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold578 SAMTools SNP 294885 294885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C144%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold578 SAMTools SNP 297806 297806 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold578 SAMTools SNP 299396 299396 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold578 SAMTools SNP 300432 300432 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C7.8e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold578 SAMTools SNP 300462 300462 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold578 SAMTools SNP 301025 301025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold578 SAMTools SNP 301663 301663 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold578 SAMTools SNP 302212 302212 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold578 SAMTools SNP 307064 307064 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold578 SAMTools SNP 307526 307526 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold578 SAMTools SNP 307600 307600 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold578 SAMTools SNP 307606 307606 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold578 SAMTools SNP 309775 309775 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold578 SAMTools SNP 310604 310604 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold578 SAMTools SNP 311360 311360 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C39%2C0:75 scaffold578 SAMTools SNP 316290 316290 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold578 SAMTools SNP 317620 317620 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold578 SAMTools SNP 318251 318251 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C3.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C104:57 scaffold578 SAMTools SNP 320076 320076 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold578 SAMTools SNP 320150 320150 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D49%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold578 SAMTools SNP 323738 323738 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold578 SAMTools SNP 325337 325337 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C42%2C0:81 scaffold578 SAMTools SNP 329282 329282 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C0%2C8%3BMQ%3D49%3BFQ%3D30%3BPV4%3D0.58%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold578 SAMTools SNP 329467 329467 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.09%2C1%2C2.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold578 SAMTools SNP 329468 329468 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.077%2C1%2C9.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold578 SAMTools SNP 329471 329471 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold578 SAMTools SNP 329648 329648 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold578 SAMTools SNP 330155 330155 16.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold578 SAMTools SNP 330815 330815 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D107%2C0%2C112%2C8%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.0076%2C8.5e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold578 SAMTools SNP 330833 330833 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C8%2C39%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.11%2C3.4e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold578 SAMTools SNP 330884 330884 19.6 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0044%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.0026%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C31%2C37%2C48%2C0%2C57:9 scaffold578 SAMTools SNP 331835 331835 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D564%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C309%2C12%2C204%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1.6e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold578 SAMTools SNP 331889 331889 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C318%2C3%2C197%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold578 SAMTools SNP 337678 337678 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold578 SAMTools SNP 337979 337979 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C27%2C0:51 scaffold578 SAMTools SNP 339579 339579 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold578 SAMTools SNP 341444 341444 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold578 SAMTools SNP 341451 341451 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold578 SAMTools SNP 341499 341499 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold578 SAMTools SNP 341501 341501 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold578 SAMTools SNP 341530 341530 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C176%2C119:99 scaffold578 SAMTools SNP 342072 342072 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C14%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.61%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold578 SAMTools SNP 342188 342188 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold578 SAMTools SNP 342195 342195 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold578 SAMTools SNP 342564 342564 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C44%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold578 SAMTools SNP 343019 343019 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold578 SAMTools SNP 343049 343049 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold578 SAMTools SNP 343729 343729 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold578 SAMTools SNP 343774 343774 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold578 SAMTools SNP 343814 343814 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold578 SAMTools SNP 346708 346708 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0038%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C199:47 scaffold578 SAMTools SNP 353582 353582 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold578 SAMTools SNP 353602 353602 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold578 SAMTools SNP 353603 353603 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C52:55 scaffold578 SAMTools SNP 353616 353616 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0091%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold578 SAMTools SNP 370350 370350 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold578 SAMTools SNP 389337 389337 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C241:99 scaffold578 SAMTools SNP 390127 390127 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold578 SAMTools SNP 390149 390149 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.24%2C0.3%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold578 SAMTools SNP 390278 390278 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.049%2C0.12%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold578 SAMTools SNP 390606 390606 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold579 SAMTools SNP 2973 2973 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold579 SAMTools SNP 3159 3159 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C184:99 scaffold579 SAMTools SNP 3271 3271 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C48%2C0:72 scaffold579 SAMTools SNP 7176 7176 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold579 SAMTools SNP 7579 7579 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D-109;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C6:99 scaffold579 SAMTools SNP 7657 7657 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold579 SAMTools SNP 8360 8360 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold579 SAMTools SNP 8399 8399 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold579 SAMTools SNP 8700 8700 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold579 SAMTools SNP 9398 9398 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold579 SAMTools SNP 9428 9428 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold579 SAMTools SNP 9433 9433 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold579 SAMTools SNP 9458 9458 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold579 SAMTools SNP 11513 11513 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.15%2C0.0048%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold579 SAMTools SNP 24926 24926 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold579 SAMTools SNP 25680 25680 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold579 SAMTools SNP 33967 33967 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold579 SAMTools SNP 36409 36409 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold579 SAMTools SNP 36427 36427 115 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold579 SAMTools SNP 36436 36436 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C21%2C0:39 scaffold579 SAMTools SNP 41263 41263 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold579 SAMTools SNP 41278 41278 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold579 SAMTools SNP 55738 55738 3.41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold579 SAMTools SNP 67496 67496 63.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C6%2C0:10 scaffold579 SAMTools SNP 75542 75542 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.077%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold579 SAMTools SNP 75601 75601 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.016%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold579 SAMTools SNP 78347 78347 19.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold579 SAMTools SNP 104466 104466 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold579 SAMTools SNP 104499 104499 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold579 SAMTools SNP 164475 164475 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold579 SAMTools SNP 174557 174557 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold579 SAMTools SNP 174563 174563 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold579 SAMTools SNP 192548 192548 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 193663 193663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 193668 193668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 202413 202413 8.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold579 SAMTools SNP 231980 231980 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C12:15 scaffold579 SAMTools SNP 232441 232441 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C249:99 scaffold579 SAMTools SNP 232458 232458 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold579 SAMTools SNP 233132 233132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C34%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C5.9e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold579 SAMTools SNP 238658 238658 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold579 SAMTools SNP 239492 239492 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.52%2C4.8e-14%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C185:61 scaffold579 SAMTools SNP 239591 239591 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.36%2C0.0009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C176:43 scaffold579 SAMTools SNP 240098 240098 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0222%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C8.6e-09%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C221:28 scaffold579 SAMTools SNP 240204 240204 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C4.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold579 SAMTools SNP 240368 240368 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00048%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold579 SAMTools SNP 245661 245661 68.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold579 SAMTools SNP 246144 246144 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 246156 246156 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold579 SAMTools SNP 246177 246177 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold579 SAMTools SNP 247031 247031 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C43%2C3%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold579 SAMTools SNP 247161 247161 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C43%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold579 SAMTools SNP 247215 247215 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C32%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold579 SAMTools SNP 247472 247472 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold579 SAMTools SNP 247489 247489 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C71:99 scaffold579 SAMTools SNP 247591 247591 127 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C17%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.53%2C3.2e-15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold579 SAMTools SNP 247938 247938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C56%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold579 SAMTools SNP 247979 247979 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold579 SAMTools SNP 247996 247996 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold579 SAMTools SNP 248290 248290 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold579 SAMTools SNP 248517 248517 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold579 SAMTools SNP 248662 248662 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold579 SAMTools SNP 249518 249518 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold579 SAMTools SNP 263220 263220 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 263232 263232 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 264656 264656 37.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold579 SAMTools SNP 271515 271515 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold579 SAMTools SNP 274995 274995 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold579 SAMTools SNP 275017 275017 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold579 SAMTools SNP 278034 278034 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold579 SAMTools SNP 278083 278083 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold579 SAMTools SNP 278084 278084 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold58 SAMTools SNP 17712 17712 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold58 SAMTools SNP 17743 17743 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 18280 18280 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C255%2C0:99 scaffold58 SAMTools SNP 21433 21433 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 21442 21442 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 21469 21469 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold58 SAMTools SNP 22018 22018 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold58 SAMTools SNP 22024 22024 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold58 SAMTools SNP 26960 26960 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C27%2C0:51 scaffold58 SAMTools SNP 28144 28144 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold58 SAMTools SNP 28183 28183 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold58 SAMTools SNP 29127 29127 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold58 SAMTools SNP 29204 29204 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 37044 37044 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold58 SAMTools SNP 37332 37332 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C10%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C245:99 scaffold58 SAMTools SNP 37336 37336 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C26%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C180:99 scaffold58 SAMTools SNP 40534 40534 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold58 SAMTools SNP 40562 40562 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C179:99 scaffold58 SAMTools SNP 40784 40784 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold58 SAMTools SNP 42075 42075 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold58 SAMTools SNP 46921 46921 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold58 SAMTools SNP 46923 46923 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C15%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.00063%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C142:99 scaffold58 SAMTools SNP 46974 46974 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C1%2C57%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C189:99 scaffold58 SAMTools SNP 48303 48303 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold58 SAMTools SNP 48346 48346 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold58 SAMTools SNP 49181 49181 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold58 SAMTools SNP 49756 49756 88 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold58 SAMTools SNP 49829 49829 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold58 SAMTools SNP 50540 50540 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold58 SAMTools SNP 50943 50943 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold58 SAMTools SNP 51564 51564 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold58 SAMTools SNP 51630 51630 96.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold58 SAMTools SNP 54052 54052 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold58 SAMTools SNP 57161 57161 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold58 SAMTools SNP 57289 57289 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.43%2C0.14%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C129:99 scaffold58 SAMTools SNP 57627 57627 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold58 SAMTools SNP 64082 64082 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C192:99 scaffold58 SAMTools SNP 64089 64089 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold58 SAMTools SNP 64526 64526 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold58 SAMTools SNP 65255 65255 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.077%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold58 SAMTools SNP 66011 66011 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 66152 66152 41.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold58 SAMTools SNP 82230 82230 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold58 SAMTools SNP 82240 82240 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0076%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold58 SAMTools SNP 82527 82527 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C242:99 scaffold58 SAMTools SNP 82554 82554 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold58 SAMTools SNP 82599 82599 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold58 SAMTools SNP 84737 84737 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 84770 84770 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold58 SAMTools SNP 84791 84791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold58 SAMTools SNP 90024 90024 223 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C12%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C248:99 scaffold58 SAMTools SNP 91019 91019 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold58 SAMTools SNP 92242 92242 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D7%2C1%2C25%2C2%3BMQ%3D37%3BFQ%3D-24%3BPV4%3D0.55%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C3:6 scaffold58 SAMTools SNP 94672 94672 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D25%2C0%2C113%2C19%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.045%2C0.098%2C1%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold58 SAMTools SNP 95504 95504 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C3%2C47%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.9e-08%2C1%2C0.042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 95808 95808 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C0%2C18%3BMQ%3D48%3BFQ%3D170%3BPV4%3D1%2C1%2C0.079%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C246:99 scaffold58 SAMTools SNP 95847 95847 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C5%3BMQ%3D49%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C228:99 scaffold58 SAMTools SNP 100595 100595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold58 SAMTools SNP 100869 100869 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C4%3BMQ%3D48%3BFQ%3D169%3BPV4%3D1%2C0.0023%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold58 SAMTools SNP 100947 100947 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D43%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C103:99 scaffold58 SAMTools SNP 101388 101388 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C14:17 scaffold58 SAMTools SNP 101406 101406 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold58 SAMTools SNP 110605 110605 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C4%3BMQ%3D36%3BFQ%3D19.1%3BPV4%3D0.0025%2C2.3e-07%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C196:49 scaffold58 SAMTools SNP 110610 110610 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C5%3BMQ%3D36%3BFQ%3D70%3BPV4%3D0.00029%2C1.4e-07%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C176:99 scaffold58 SAMTools SNP 112033 112033 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C5%3BMQ%3D44%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C217:99 scaffold58 SAMTools SNP 112043 112043 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C7%3BMQ%3D40%3BFQ%3D103%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C211:99 scaffold58 SAMTools SNP 131184 131184 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold58 SAMTools SNP 131247 131247 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C51%2C0:99 scaffold58 SAMTools SNP 131288 131288 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold58 SAMTools SNP 131663 131663 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold58 SAMTools SNP 131667 131667 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold58 SAMTools SNP 159025 159025 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 160695 160695 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 160928 160928 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold58 SAMTools SNP 162049 162049 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold58 SAMTools SNP 162107 162107 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 162180 162180 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 163710 163710 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 164354 164354 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold58 SAMTools SNP 169034 169034 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C231:37 scaffold58 SAMTools SNP 169037 169037 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold58 SAMTools SNP 222430 222430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 223154 223154 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 254151 254151 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 254159 254159 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 254294 254294 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 254299 254299 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 291557 291557 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold58 SAMTools SNP 338294 338294 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold58 SAMTools SNP 339158 339158 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold58 SAMTools SNP 339698 339698 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold58 SAMTools SNP 339893 339893 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold58 SAMTools SNP 339905 339905 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold58 SAMTools SNP 339971 339971 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold58 SAMTools SNP 340067 340067 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold58 SAMTools SNP 341003 341003 220 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold58 SAMTools SNP 341352 341352 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold58 SAMTools SNP 341766 341766 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold58 SAMTools SNP 341827 341827 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold58 SAMTools SNP 343276 343276 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C74:76 scaffold58 SAMTools SNP 343325 343325 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold58 SAMTools SNP 344467 344467 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold58 SAMTools SNP 347532 347532 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold58 SAMTools SNP 347538 347538 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C113:80 scaffold58 SAMTools SNP 362207 362207 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C211:99 scaffold58 SAMTools SNP 362946 362946 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.13%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C41:38 scaffold58 SAMTools SNP 380689 380689 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 380922 380922 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold58 SAMTools SNP 380961 380961 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C83:42 scaffold58 SAMTools SNP 381559 381559 88 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C21%2C117%2C0%2C114:16 scaffold58 SAMTools SNP 381863 381863 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold58 SAMTools SNP 449335 449335 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 449784 449784 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 456396 456396 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C1%2C61%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C5.2e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold58 SAMTools SNP 456726 456726 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C7%2C15%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.35%2C3.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold58 SAMTools SNP 456816 456816 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.002%2C4.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold58 SAMTools SNP 457086 457086 41 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C58%2C19%2C75%2C0%2C60:73 scaffold58 SAMTools SNP 457197 457197 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C21%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0015%2C2.9e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold58 SAMTools SNP 457224 457224 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.012%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold58 SAMTools SNP 458142 458142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C47%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold58 SAMTools SNP 459434 459434 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C51%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold58 SAMTools SNP 459467 459467 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C47%2C32%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D2.9e-11%2C8e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold58 SAMTools SNP 459527 459527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C1%2C34%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-07%2C1.3e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 459548 459548 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C24%2C20%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.02%2C2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold58 SAMTools SNP 459635 459635 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C38%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-07%2C0.36%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 459665 459665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C30%2C52%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 460170 460170 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C51%2C6%2C5%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.015%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold58 SAMTools SNP 460213 460213 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C51%2C6%2C52%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.58%2C7.1e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold58 SAMTools SNP 460839 460839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 460870 460870 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C7%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold58 SAMTools SNP 460939 460939 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold58 SAMTools SNP 460945 460945 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C5%2C22%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.53%2C8.9e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold58 SAMTools SNP 461034 461034 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C20%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.5%2C1.4e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold58 SAMTools SNP 466138 466138 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold58 SAMTools SNP 506758 506758 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold58 SAMTools SNP 508708 508708 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold58 SAMTools SNP 509407 509407 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.00094%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold58 SAMTools SNP 509432 509432 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold58 SAMTools SNP 510265 510265 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 512502 512502 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold58 SAMTools SNP 525263 525263 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold58 SAMTools SNP 525328 525328 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 525332 525332 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 527886 527886 33.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold58 SAMTools SNP 527888 527888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 534484 534484 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 534970 534970 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.041%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold58 SAMTools SNP 537138 537138 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold58 SAMTools SNP 538289 538289 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold58 SAMTools SNP 567377 567377 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 569859 569859 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold58 SAMTools SNP 571141 571141 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold58 SAMTools SNP 571734 571734 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold58 SAMTools SNP 571979 571979 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 573827 573827 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D292%2C98%2C43%2C53%3BMQ%3D50%3BFQ%3D143%3BPV4%3D3.6e-08%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold58 SAMTools SNP 573853 573853 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D694%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D357%2C154%2C65%2C118%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.5e-16%2C4.5e-15%2C1%2C1.4e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 573902 573902 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D704%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C72%2C411%2C126%3BMQ%3D50%3BFQ%3D202%3BPV4%3D2.8e-08%2C1%2C1%2C4.5e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold58 SAMTools SNP 574118 574118 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D514%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D217%2C160%2C66%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 575404 575404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C69%2C1%2C191%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold58 SAMTools SNP 576157 576157 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold58 SAMTools SNP 582183 582183 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C18%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.44%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold58 SAMTools SNP 584298 584298 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C74:59 scaffold58 SAMTools SNP 600661 600661 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 622890 622890 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold58 SAMTools SNP 623489 623489 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C150:31 scaffold58 SAMTools SNP 625170 625170 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold58 SAMTools SNP 625173 625173 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold58 SAMTools SNP 625189 625189 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold58 SAMTools SNP 625501 625501 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold58 SAMTools SNP 634726 634726 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold58 SAMTools SNP 635546 635546 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 636819 636819 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold58 SAMTools SNP 637447 637447 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold58 SAMTools SNP 637792 637792 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.29%2C1%2C4.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold58 SAMTools SNP 637808 637808 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C7.4e-08%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C197:59 scaffold58 SAMTools SNP 641744 641744 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 641780 641780 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 649646 649646 14.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C14:17 scaffold58 SAMTools SNP 650022 650022 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 650028 650028 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 651068 651068 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C215:41 scaffold58 SAMTools SNP 651160 651160 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold58 SAMTools SNP 653767 653767 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.22%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold58 SAMTools SNP 655102 655102 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold58 SAMTools SNP 657966 657966 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold58 SAMTools SNP 657969 657969 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0011%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold58 SAMTools SNP 660069 660069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold58 SAMTools SNP 683731 683731 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C88:36 scaffold58 SAMTools SNP 684235 684235 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C25%2C48%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0029%2C5.2e-88%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold58 SAMTools SNP 684259 684259 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C48%2C0%2C24%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C4.7e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold58 SAMTools SNP 684559 684559 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C69%2C64%2C43%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.25%2C2.2e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold58 SAMTools SNP 684591 684591 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D605%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C33%2C0:63 scaffold58 SAMTools SNP 684612 684612 132 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D704%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D198%2C148%2C192%2C163%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold58 SAMTools SNP 687253 687253 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C24%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold58 SAMTools SNP 688323 688323 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold58 SAMTools SNP 688603 688603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 689201 689201 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 690150 690150 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C60%2C8%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.0078%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 690182 690182 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 690492 690492 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C174%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 691825 691825 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 694731 694731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C50%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C0.17%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 694806 694806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C59%2C11%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.00032%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 695274 695274 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C62%2C18%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 695397 695397 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C17%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C249:99 scaffold58 SAMTools SNP 696616 696616 82.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C15%2C0:27 scaffold58 SAMTools SNP 698267 698267 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C9%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 698474 698474 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold58 SAMTools SNP 698804 698804 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 699863 699863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C59%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold58 SAMTools SNP 700682 700682 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C44%2C9%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold58 SAMTools SNP 700706 700706 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C44%2C9%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.002%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold58 SAMTools SNP 700730 700730 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C9%2C43%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.11%2C0.088%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold58 SAMTools SNP 701106 701106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 701136 701136 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C19%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 701617 701617 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold58 SAMTools SNP 714173 714173 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C146:99 scaffold58 SAMTools SNP 725166 725166 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C21%2C0:34 scaffold58 SAMTools SNP 725325 725325 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold58 SAMTools SNP 758030 758030 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.067%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold58 SAMTools SNP 777310 777310 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold58 SAMTools SNP 777338 777338 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 785820 785820 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold58 SAMTools SNP 786806 786806 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold58 SAMTools SNP 795938 795938 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 795947 795947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 796537 796537 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C49%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold58 SAMTools SNP 797100 797100 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.0084%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 798141 798141 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.03%2C4.5e-05%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold58 SAMTools SNP 798150 798150 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.045%2C0.0032%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold58 SAMTools SNP 799205 799205 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.0041%2C0.037%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold58 SAMTools SNP 799220 799220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold58 SAMTools SNP 799262 799262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.00082%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold58 SAMTools SNP 799512 799512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold58 SAMTools SNP 800556 800556 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 800619 800619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C14%2C87%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C7.5e-66%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 800697 800697 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 802600 802600 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C45%2C0:87 scaffold58 SAMTools SNP 802629 802629 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C19%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C7.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold58 SAMTools SNP 802792 802792 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold58 SAMTools SNP 802834 802834 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C132:99 scaffold58 SAMTools SNP 803483 803483 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 803487 803487 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold58 SAMTools SNP 804735 804735 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold58 SAMTools SNP 804798 804798 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D49%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold58 SAMTools SNP 806339 806339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold58 SAMTools SNP 810382 810382 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C34%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold58 SAMTools SNP 810444 810444 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C27%2C0%3BMQ%3D49%3BFQ%3D117%3BPV4%3D0.0037%2C4.5e-05%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold58 SAMTools SNP 810459 810459 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C0%2C9%3BMQ%3D49%3BFQ%3D36%3BPV4%3D1%2C0.08%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold58 SAMTools SNP 810468 810468 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C63%2C0%2C17%3BMQ%3D49%3BFQ%3D21%3BPV4%3D1%2C0.0039%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C244:51 scaffold58 SAMTools SNP 810471 810471 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C73%2C0%2C27%3BMQ%3D49%3BFQ%3D69%3BPV4%3D1%2C0.012%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C254:99 scaffold58 SAMTools SNP 813266 813266 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0169%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D24%2C0%2C38%2C97%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D5.5e-12%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold58 SAMTools SNP 813308 813308 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C129%2C3%2C15%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.12%2C0.35%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold58 SAMTools SNP 813326 813326 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C116%2C15%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold58 SAMTools SNP 814569 814569 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold58 SAMTools SNP 814624 814624 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold58 SAMTools SNP 823024 823024 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C110:30 scaffold580 SAMTools SNP 656 656 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 49342 49342 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C37%3BMQ%3D1%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C132%2C0:99 scaffold580 SAMTools SNP 53153 53153 123 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C8%2C13%3BMQ%3D39%3BFQ%3D126%3BPV4%3D0.0053%2C1%2C0.0066%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C246:99 scaffold580 SAMTools SNP 53162 53162 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C28%2C10%3BMQ%3D39%3BFQ%3D137%3BPV4%3D0.015%2C0.058%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C164:99 scaffold580 SAMTools SNP 54159 54159 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C78:81 scaffold580 SAMTools SNP 54325 54325 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.2%2C8.7e-08%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C196:66 scaffold580 SAMTools SNP 54369 54369 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold580 SAMTools SNP 54411 54411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C55%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 54954 54954 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C57%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 55528 55528 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold580 SAMTools SNP 55537 55537 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold580 SAMTools SNP 55615 55615 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold580 SAMTools SNP 55830 55830 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.24%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C232:99 scaffold580 SAMTools SNP 55852 55852 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold580 SAMTools SNP 55864 55864 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0057%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C228:56 scaffold580 SAMTools SNP 56022 56022 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.24%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C227:99 scaffold580 SAMTools SNP 56461 56461 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold580 SAMTools SNP 56679 56679 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.057%2C0.027%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold580 SAMTools SNP 56742 56742 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold580 SAMTools SNP 59966 59966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 60005 60005 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 60047 60047 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C15%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold580 SAMTools SNP 60363 60363 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.45%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 60711 60711 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.11%2C0.055%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold580 SAMTools SNP 60978 60978 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold580 SAMTools SNP 60987 60987 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C2%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.12%2C0.19%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold580 SAMTools SNP 61364 61364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold580 SAMTools SNP 61379 61379 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C16%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.13%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold580 SAMTools SNP 61388 61388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C12%2C3%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.6%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold580 SAMTools SNP 61427 61427 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.23%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold580 SAMTools SNP 61428 61428 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D14%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold580 SAMTools SNP 61688 61688 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.39%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold580 SAMTools SNP 61757 61757 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold580 SAMTools SNP 61876 61876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold580 SAMTools SNP 62042 62042 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.3e-08%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C171:61 scaffold580 SAMTools SNP 62069 62069 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C243:99 scaffold580 SAMTools SNP 62090 62090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C0.27%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold580 SAMTools SNP 62262 62262 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.006%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold580 SAMTools SNP 62287 62287 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0063%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold580 SAMTools SNP 62334 62334 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold580 SAMTools SNP 62461 62461 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold580 SAMTools SNP 62584 62584 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold580 SAMTools SNP 62656 62656 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 62671 62671 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold580 SAMTools SNP 62743 62743 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C30%2C0:57 scaffold580 SAMTools SNP 62763 62763 63.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold580 SAMTools SNP 62935 62935 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.18%2C1.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C232:86 scaffold580 SAMTools SNP 63154 63154 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.21%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold580 SAMTools SNP 64002 64002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 64358 64358 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 64391 64391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C40%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold580 SAMTools SNP 64409 64409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C21%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.23%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 64633 64633 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.036%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold580 SAMTools SNP 64665 64665 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.68%2C0.0049%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold580 SAMTools SNP 64666 64666 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold580 SAMTools SNP 65351 65351 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C16%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.39%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold580 SAMTools SNP 65354 65354 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold580 SAMTools SNP 65357 65357 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold580 SAMTools SNP 65520 65520 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C13%2C12%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold580 SAMTools SNP 65810 65810 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.3%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C151:99 scaffold580 SAMTools SNP 65825 65825 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold580 SAMTools SNP 66145 66145 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold580 SAMTools SNP 66349 66349 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C2%3BMQ%3D44%3BFQ%3D17.1%3BPV4%3D0.42%2C0.48%2C0.3%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C232:47 scaffold580 SAMTools SNP 66779 66779 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D21%3BFQ%3D-27%3BPV4%3D0.49%2C0.11%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C0:4 scaffold580 SAMTools SNP 79716 79716 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold580 SAMTools SNP 83484 83484 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 160290 160290 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C36%2C0:69 scaffold580 SAMTools SNP 160362 160362 21.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D22%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold580 SAMTools SNP 203868 203868 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C93%2C0:99 scaffold580 SAMTools SNP 204093 204093 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold580 SAMTools SNP 210386 210386 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C16%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold580 SAMTools SNP 250013 250013 56.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C18%2C0:33 scaffold580 SAMTools SNP 251153 251153 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C126%2C0:99 scaffold580 SAMTools SNP 251899 251899 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C254:99 scaffold580 SAMTools SNP 251927 251927 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 254436 254436 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C51%2C27%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 254916 254916 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold580 SAMTools SNP 255143 255143 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold580 SAMTools SNP 255483 255483 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold580 SAMTools SNP 255498 255498 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold580 SAMTools SNP 255784 255784 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.11%2C2.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C157:99 scaffold580 SAMTools SNP 255796 255796 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.12%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold580 SAMTools SNP 255823 255823 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C4%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold580 SAMTools SNP 256445 256445 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C33%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 256478 256478 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C46%2C15%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C8.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 256514 256514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 257784 257784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C23%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold580 SAMTools SNP 257802 257802 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C5%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold580 SAMTools SNP 257841 257841 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold580 SAMTools SNP 258885 258885 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C140:61 scaffold580 SAMTools SNP 259964 259964 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold580 SAMTools SNP 265078 265078 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold580 SAMTools SNP 265168 265168 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold580 SAMTools SNP 265687 265687 53.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold580 SAMTools SNP 266044 266044 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C3.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C185:55 scaffold580 SAMTools SNP 266589 266589 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold580 SAMTools SNP 266745 266745 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold580 SAMTools SNP 267202 267202 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold580 SAMTools SNP 274789 274789 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 286199 286199 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.087%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C158:60 scaffold580 SAMTools SNP 290972 290972 38.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold580 SAMTools SNP 292179 292179 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold580 SAMTools SNP 292220 292220 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 292242 292242 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 293241 293241 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0035%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold580 SAMTools SNP 293298 293298 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold580 SAMTools SNP 293781 293781 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold580 SAMTools SNP 293904 293904 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D19%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C111%2C0:99 scaffold580 SAMTools SNP 294436 294436 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C233%2C16%3BMQ%3D11%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold580 SAMTools SNP 294472 294472 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C272%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C255%2C0:99 scaffold580 SAMTools SNP 299455 299455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold580 SAMTools SNP 301285 301285 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D12%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C117%2C0:99 scaffold580 SAMTools SNP 301747 301747 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 320677 320677 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold580 SAMTools SNP 321561 321561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C5%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 322159 322159 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C185%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 322186 322186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C233%2C74%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 326036 326036 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 326070 326070 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C57:43 scaffold580 SAMTools SNP 326179 326179 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold580 SAMTools SNP 327378 327378 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold580 SAMTools SNP 327406 327406 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold580 SAMTools SNP 328269 328269 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0018%2C1%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold580 SAMTools SNP 328270 328270 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0018%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold580 SAMTools SNP 328289 328289 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0015%2C0.14%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold580 SAMTools SNP 328770 328770 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C0.21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold580 SAMTools SNP 328791 328791 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold580 SAMTools SNP 330957 330957 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold580 SAMTools SNP 331274 331274 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 331455 331455 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.077%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C4%2C0:7 scaffold580 SAMTools SNP 331472 331472 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C39%2C0:75 scaffold580 SAMTools SNP 332272 332272 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 332304 332304 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold580 SAMTools SNP 337476 337476 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold580 SAMTools SNP 337506 337506 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.028%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold580 SAMTools SNP 337635 337635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C42%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold580 SAMTools SNP 338488 338488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold580 SAMTools SNP 338643 338643 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C50%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 339010 339010 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 340289 340289 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold580 SAMTools SNP 340350 340350 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 341320 341320 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold580 SAMTools SNP 341503 341503 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C120%2C0:99 scaffold580 SAMTools SNP 342313 342313 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C20%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.5%2C4.1e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold580 SAMTools SNP 342799 342799 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C7%2C16%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.58%2C5.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold580 SAMTools SNP 343030 343030 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C46%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 343057 343057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 343571 343571 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C28%2C19%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-05%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 343604 343604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C23%2C15%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-05%2C1%2C1%2C8.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 344854 344854 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.61%2C0.15%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold580 SAMTools SNP 344884 344884 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold580 SAMTools SNP 344896 344896 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold580 SAMTools SNP 344926 344926 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.092%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C174:99 scaffold580 SAMTools SNP 345383 345383 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold580 SAMTools SNP 346368 346368 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.0024%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold580 SAMTools SNP 346375 346375 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0071%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 346600 346600 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C16%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0081%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold580 SAMTools SNP 347026 347026 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C45%2C0:87 scaffold580 SAMTools SNP 347855 347855 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold580 SAMTools SNP 347871 347871 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold580 SAMTools SNP 348450 348450 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold580 SAMTools SNP 358961 358961 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.47%2C0.048%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C156:50 scaffold580 SAMTools SNP 358975 358975 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold580 SAMTools SNP 358990 358990 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold580 SAMTools SNP 359803 359803 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold580 SAMTools SNP 359837 359837 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold580 SAMTools SNP 381113 381113 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold580 SAMTools SNP 381732 381732 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 382498 382498 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold580 SAMTools SNP 382746 382746 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold580 SAMTools SNP 392028 392028 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D596%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D270%2C175%2C1%2C134%3BMQ%3D50%3BFQ%3D26%3BPV4%3D5.5e-43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold580 SAMTools SNP 392367 392367 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C21%2C11%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.017%2C1%2C1%2C1.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold580 SAMTools SNP 392391 392391 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C14%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold580 SAMTools SNP 394085 394085 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D10.5%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold580 SAMTools SNP 395583 395583 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C8.1e-22%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold580 SAMTools SNP 395679 395679 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold580 SAMTools SNP 395685 395685 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold580 SAMTools SNP 399186 399186 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold580 SAMTools SNP 399612 399612 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C28%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C241:99 scaffold580 SAMTools SNP 399633 399633 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.077%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C222:99 scaffold580 SAMTools SNP 399636 399636 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 400427 400427 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold580 SAMTools SNP 401170 401170 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold580 SAMTools SNP 401448 401448 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold580 SAMTools SNP 402598 402598 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold580 SAMTools SNP 414901 414901 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold580 SAMTools SNP 417902 417902 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold580 SAMTools SNP 421676 421676 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 425465 425465 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold580 SAMTools SNP 425699 425699 38.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold580 SAMTools SNP 428628 428628 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 428721 428721 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C0.17%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C14:17 scaffold580 SAMTools SNP 428859 428859 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold580 SAMTools SNP 430558 430558 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 432072 432072 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D79.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C120:99 scaffold580 SAMTools SNP 432261 432261 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold580 SAMTools SNP 432559 432559 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold580 SAMTools SNP 432604 432604 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold580 SAMTools SNP 441807 441807 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C185%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 442047 442047 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 442068 442068 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C21%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C33%2C0:63 scaffold580 SAMTools SNP 442637 442637 206 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C1%2C12%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.24%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold580 SAMTools SNP 442661 442661 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 442999 442999 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C20%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D2.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C167:99 scaffold580 SAMTools SNP 443407 443407 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C25%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold580 SAMTools SNP 443457 443457 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C59%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold580 SAMTools SNP 443969 443969 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 444581 444581 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C35%3BMQ%3D50%3BFQ%3D-103%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C0:99 scaffold580 SAMTools SNP 444761 444761 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C8%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold580 SAMTools SNP 444791 444791 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold580 SAMTools SNP 445275 445275 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C4%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 445520 445520 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C55%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 445762 445762 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 446153 446153 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold580 SAMTools SNP 446228 446228 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold580 SAMTools SNP 446243 446243 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C19%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold580 SAMTools SNP 446582 446582 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C26%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold580 SAMTools SNP 447083 447083 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C0%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold580 SAMTools SNP 447684 447684 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold580 SAMTools SNP 447705 447705 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold580 SAMTools SNP 449422 449422 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.62%2C0.024%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold580 SAMTools SNP 450620 450620 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 452499 452499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C7%2C14%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.15%2C1%2C0.11%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 454721 454721 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C2%2C21%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.088%2C1%2C3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold580 SAMTools SNP 472011 472011 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold580 SAMTools SNP 483974 483974 17.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold580 SAMTools SNP 484178 484178 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C21%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold580 SAMTools SNP 484184 484184 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C11%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0071%2C9.9e-29%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold580 SAMTools SNP 491267 491267 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold580 SAMTools SNP 501115 501115 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C0%2C13%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.2%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold580 SAMTools SNP 501136 501136 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C1%2C14%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.24%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold580 SAMTools SNP 505793 505793 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.12%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold580 SAMTools SNP 505862 505862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C30%2C27%3BMQ%3D50%3BFQ%3D-169%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C142%2C0:99 scaffold580 SAMTools SNP 506667 506667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C44%2C25%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C0.4%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C161%2C0:99 scaffold580 SAMTools SNP 507263 507263 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C47%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold580 SAMTools SNP 509031 509031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 510540 510540 164 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.00049%2C0.029%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold580 SAMTools SNP 510546 510546 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C14%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.00035%2C1.3e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold580 SAMTools SNP 510606 510606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold580 SAMTools SNP 510958 510958 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 511006 511006 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C17%2C28%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.13%2C1.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold580 SAMTools SNP 511081 511081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C11%3BMQ%3D47%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold580 SAMTools SNP 511105 511105 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C29%2C21%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.18%2C0.25%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 511839 511839 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold580 SAMTools SNP 512604 512604 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 512622 512622 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 513836 513836 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C7%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.2%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold580 SAMTools SNP 513947 513947 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold580 SAMTools SNP 514255 514255 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold580 SAMTools SNP 514297 514297 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold580 SAMTools SNP 514303 514303 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold580 SAMTools SNP 515079 515079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 515136 515136 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C3.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold580 SAMTools SNP 515148 515148 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C3%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C214%2C0:99 scaffold580 SAMTools SNP 515559 515559 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold580 SAMTools SNP 516429 516429 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C93%2C1%2C80%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.47%2C2.2e-139%2C1%2C2.9e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold580 SAMTools SNP 523200 523200 28.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold580 SAMTools SNP 523259 523259 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 529957 529957 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold580 SAMTools SNP 530968 530968 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold580 SAMTools SNP 531292 531292 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold580 SAMTools SNP 532677 532677 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold580 SAMTools SNP 535023 535023 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold580 SAMTools SNP 536812 536812 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C24%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.27%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold580 SAMTools SNP 538248 538248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold580 SAMTools SNP 538275 538275 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold580 SAMTools SNP 538813 538813 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C18%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C142:99 scaffold580 SAMTools SNP 538836 538836 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 539593 539593 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.0072%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold580 SAMTools SNP 539785 539785 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.073%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C176:93 scaffold580 SAMTools SNP 540356 540356 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold580 SAMTools SNP 540363 540363 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold580 SAMTools SNP 540402 540402 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold580 SAMTools SNP 540607 540607 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold580 SAMTools SNP 555423 555423 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.074%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C100:36 scaffold580 SAMTools SNP 558275 558275 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold580 SAMTools SNP 559385 559385 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C5.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C161:83 scaffold580 SAMTools SNP 559517 559517 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold580 SAMTools SNP 559838 559838 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C5%3BMQ%3D49%3BFQ%3D25%3BPV4%3D0.037%2C1e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold580 SAMTools SNP 559862 559862 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C0%2C14%3BMQ%3D49%3BFQ%3D59%3BPV4%3D5.6e-05%2C2.2e-08%2C0.061%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold580 SAMTools SNP 560393 560393 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C20%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C3.8e-20%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 560603 560603 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold580 SAMTools SNP 561408 561408 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D35%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C36%2C0:69 scaffold580 SAMTools SNP 565484 565484 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C2.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C232:99 scaffold580 SAMTools SNP 565512 565512 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.5e-11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C197:43 scaffold580 SAMTools SNP 569982 569982 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C42%2C0:81 scaffold580 SAMTools SNP 571371 571371 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold580 SAMTools SNP 571539 571539 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold580 SAMTools SNP 572211 572211 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 572235 572235 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold580 SAMTools SNP 572387 572387 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold580 SAMTools SNP 572410 572410 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold580 SAMTools SNP 572411 572411 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold580 SAMTools SNP 576960 576960 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold580 SAMTools SNP 577529 577529 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold580 SAMTools SNP 577976 577976 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold580 SAMTools SNP 578004 578004 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold580 SAMTools SNP 578356 578356 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold580 SAMTools SNP 578459 578459 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold580 SAMTools SNP 580961 580961 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold580 SAMTools SNP 581728 581728 17.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold580 SAMTools SNP 584326 584326 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C164%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold580 SAMTools SNP 584363 584363 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold580 SAMTools SNP 584408 584408 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold580 SAMTools SNP 584416 584416 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold580 SAMTools SNP 584665 584665 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.53%2C0.1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold580 SAMTools SNP 584674 584674 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 585764 585764 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C1%2C25%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00014%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold580 SAMTools SNP 590430 590430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 590495 590495 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.25%2C0.092%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C177:50 scaffold580 SAMTools SNP 595692 595692 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold580 SAMTools SNP 596758 596758 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D37.7%3BPV4%3D0.46%2C1.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C76:68 scaffold580 SAMTools SNP 609078 609078 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold580 SAMTools SNP 609083 609083 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold580 SAMTools SNP 613967 613967 86.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold580 SAMTools SNP 614489 614489 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.45%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 614656 614656 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold580 SAMTools SNP 614725 614725 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold580 SAMTools SNP 614882 614882 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.032%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold580 SAMTools SNP 614901 614901 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold580 SAMTools SNP 620507 620507 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C30%2C0:57 scaffold580 SAMTools SNP 620521 620521 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold580 SAMTools SNP 621220 621220 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.097%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C202:99 scaffold580 SAMTools SNP 621557 621557 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold580 SAMTools SNP 621605 621605 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C78%2C0:99 scaffold580 SAMTools SNP 621707 621707 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C45%2C1%2C20%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.00027%2C0.0015%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold580 SAMTools SNP 621737 621737 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C113%2C4%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold580 SAMTools SNP 623851 623851 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold580 SAMTools SNP 625889 625889 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C76%2C0%2C47%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C0.26%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold580 SAMTools SNP 626058 626058 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold580 SAMTools SNP 642472 642472 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold580 SAMTools SNP 642485 642485 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold580 SAMTools SNP 643310 643310 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0075%2C1.2e-22%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold580 SAMTools SNP 643364 643364 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C181:39 scaffold580 SAMTools SNP 643760 643760 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold580 SAMTools SNP 645504 645504 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold580 SAMTools SNP 649432 649432 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 347 347 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 491 491 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 1774 1774 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.21%2C2.3e-11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold581 SAMTools SNP 1821 1821 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C30%2C0:57 scaffold581 SAMTools SNP 3710 3710 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold581 SAMTools SNP 3711 3711 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold581 SAMTools SNP 3758 3758 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold581 SAMTools SNP 8179 8179 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold581 SAMTools SNP 8280 8280 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C59%3BMQ%3D50%3BFQ%3D-252%3BPV4%3D0.34%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C225%2C0:99 scaffold581 SAMTools SNP 9174 9174 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold581 SAMTools SNP 40197 40197 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.014%2C0.43%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold581 SAMTools SNP 44212 44212 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C32%2C0%2C28%3BMQ%3D50%3BFQ%3D175%3BPV4%3D5.5e-07%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold581 SAMTools SNP 46294 46294 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold581 SAMTools SNP 47028 47028 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold581 SAMTools SNP 47053 47053 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold581 SAMTools SNP 49336 49336 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.055%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold581 SAMTools SNP 49872 49872 39.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold581 SAMTools SNP 50109 50109 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold581 SAMTools SNP 50249 50249 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold581 SAMTools SNP 92879 92879 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C246:99 scaffold581 SAMTools SNP 94126 94126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C39%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold581 SAMTools SNP 94400 94400 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.052%2C0.48%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold581 SAMTools SNP 94424 94424 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 94962 94962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 94989 94989 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 95215 95215 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 96814 96814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C27%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold581 SAMTools SNP 97055 97055 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C30%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 97088 97088 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C34%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.059%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 97379 97379 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C63%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold581 SAMTools SNP 97836 97836 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 98246 98246 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C14%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold581 SAMTools SNP 98285 98285 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold581 SAMTools SNP 98473 98473 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C10%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold581 SAMTools SNP 98482 98482 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C12%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 100585 100585 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C32%2C22%3BMQ%3D50%3BFQ%3D-154%3BPV4%3D0.42%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C127%2C0:99 scaffold581 SAMTools SNP 100627 100627 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D16%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.24%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold581 SAMTools SNP 101361 101361 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 101548 101548 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold581 SAMTools SNP 104643 104643 110 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C112%2C230%2C0%2C221:39 scaffold581 SAMTools SNP 104649 104649 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold581 SAMTools SNP 104868 104868 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold581 SAMTools SNP 104919 104919 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold581 SAMTools SNP 104979 104979 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold581 SAMTools SNP 105156 105156 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold581 SAMTools SNP 105297 105297 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold581 SAMTools SNP 105342 105342 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 105502 105502 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold581 SAMTools SNP 110608 110608 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 111203 111203 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold581 SAMTools SNP 111772 111772 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold581 SAMTools SNP 111821 111821 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.44%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C253:59 scaffold581 SAMTools SNP 111896 111896 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C51%2C0:99 scaffold581 SAMTools SNP 112090 112090 57.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold581 SAMTools SNP 112336 112336 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold581 SAMTools SNP 112381 112381 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C68%2C23%3BMQ%3D47%3BFQ%3D180%3BPV4%3D0.039%2C1%2C0.2%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold581 SAMTools SNP 112519 112519 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C27%2C6%2C6%3BMQ%3D46%3BFQ%3D94%3BPV4%3D0.18%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold581 SAMTools SNP 112523 112523 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C27%2C6%2C6%3BMQ%3D46%3BFQ%3D94%3BPV4%3D0.18%2C0.028%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold581 SAMTools SNP 112914 112914 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C51%2C0%2C8%3BMQ%3D49%3BFQ%3D57%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C207:87 scaffold581 SAMTools SNP 112918 112918 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C51%3BMQ%3D49%3BFQ%3D57%3BPV4%3D1%2C1%2C0.29%2C6.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C84:87 scaffold581 SAMTools SNP 112920 112920 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C8%3BMQ%3D49%3BFQ%3D60%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C209:90 scaffold581 SAMTools SNP 112991 112991 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold581 SAMTools SNP 131592 131592 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold581 SAMTools SNP 243044 243044 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 253459 253459 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C135%2C0:99 scaffold581 SAMTools SNP 333657 333657 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold581 SAMTools SNP 351236 351236 37.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold581 SAMTools SNP 351311 351311 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C7.3e-09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C26:29 scaffold582 SAMTools SNP 13394 13394 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold582 SAMTools SNP 13504 13504 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 7680 7680 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 7689 7689 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 17825 17825 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 20314 20314 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D18.7%3BPV4%3D1%2C9.1e-14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C57:48 scaffold583 SAMTools SNP 25505 25505 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold583 SAMTools SNP 25561 25561 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold583 SAMTools SNP 33103 33103 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold583 SAMTools SNP 67978 67978 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold583 SAMTools SNP 74744 74744 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold583 SAMTools SNP 74766 74766 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold583 SAMTools SNP 75476 75476 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold583 SAMTools SNP 76091 76091 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C45%2C0:87 scaffold583 SAMTools SNP 76115 76115 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold583 SAMTools SNP 76252 76252 11.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold583 SAMTools SNP 76753 76753 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 77807 77807 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold583 SAMTools SNP 77982 77982 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 77986 77986 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.19%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold583 SAMTools SNP 78391 78391 60.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold583 SAMTools SNP 78484 78484 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold583 SAMTools SNP 78493 78493 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold583 SAMTools SNP 79449 79449 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold583 SAMTools SNP 79708 79708 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold583 SAMTools SNP 82225 82225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 82414 82414 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold583 SAMTools SNP 87654 87654 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold583 SAMTools SNP 87674 87674 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold583 SAMTools SNP 87747 87747 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold583 SAMTools SNP 120334 120334 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 137937 137937 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 139063 139063 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.00069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold583 SAMTools SNP 150808 150808 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold583 SAMTools SNP 153391 153391 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 153397 153397 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 156520 156520 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 157532 157532 11.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold583 SAMTools SNP 158040 158040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 158208 158208 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold583 SAMTools SNP 158214 158214 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold583 SAMTools SNP 170768 170768 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 176388 176388 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 176797 176797 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold583 SAMTools SNP 196527 196527 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C15%2C49%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold583 SAMTools SNP 196533 196533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C100%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 200876 200876 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C78%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 201227 201227 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C8%2C63%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 202233 202233 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold583 SAMTools SNP 202633 202633 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 203009 203009 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold583 SAMTools SNP 203189 203189 47.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold583 SAMTools SNP 204468 204468 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold583 SAMTools SNP 204484 204484 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold583 SAMTools SNP 205765 205765 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C18%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 205861 205861 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 206207 206207 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C26%2C6%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 206265 206265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C5%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold583 SAMTools SNP 206758 206758 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 206866 206866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C50%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold583 SAMTools SNP 207230 207230 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold583 SAMTools SNP 207299 207299 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold583 SAMTools SNP 207329 207329 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C90%2C0:99 scaffold583 SAMTools SNP 207362 207362 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C29%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold583 SAMTools SNP 207368 207368 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C29%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold583 SAMTools SNP 207926 207926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D29%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold583 SAMTools SNP 208540 208540 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold583 SAMTools SNP 208829 208829 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C3%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 209433 209433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 210102 210102 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C25%2C13%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0085%2C9e-08%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold583 SAMTools SNP 216623 216623 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C81%2C142%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.34%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 218560 218560 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C66%2C49%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 218561 218561 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D423%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C59%2C50%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 219162 219162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C253%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 219340 219340 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C1%2C32%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1.8e-07%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold583 SAMTools SNP 219367 219367 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold583 SAMTools SNP 235238 235238 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C18%2C0:33 scaffold583 SAMTools SNP 241912 241912 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold583 SAMTools SNP 242086 242086 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 248727 248727 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 249912 249912 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D50.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C79:80 scaffold583 SAMTools SNP 251139 251139 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C0%2C4%3BMQ%3D33%3BFQ%3D38%3BPV4%3D0.024%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C166:68 scaffold583 SAMTools SNP 295270 295270 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.074%2C0.053%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C228:99 scaffold583 SAMTools SNP 295541 295541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold583 SAMTools SNP 295598 295598 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 295667 295667 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 296531 296531 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 296579 296579 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C6e-06%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C110:28 scaffold583 SAMTools SNP 296648 296648 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D93.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C135:99 scaffold583 SAMTools SNP 296660 296660 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold583 SAMTools SNP 297517 297517 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold583 SAMTools SNP 298755 298755 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.24%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold583 SAMTools SNP 299354 299354 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.39%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold583 SAMTools SNP 299855 299855 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold583 SAMTools SNP 299874 299874 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0342%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold583 SAMTools SNP 301249 301249 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold583 SAMTools SNP 301272 301272 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 315722 315722 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C69%2C0:99 scaffold583 SAMTools SNP 315887 315887 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold583 SAMTools SNP 316085 316085 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold583 SAMTools SNP 322705 322705 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold583 SAMTools SNP 356762 356762 14.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold583 SAMTools SNP 367905 367905 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D30.9%3BPV4%3D1%2C6.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C74:61 scaffold583 SAMTools SNP 368242 368242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold583 SAMTools SNP 368293 368293 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 368311 368311 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C68:36 scaffold583 SAMTools SNP 368350 368350 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold583 SAMTools SNP 368829 368829 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 369509 369509 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 378023 378023 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 391830 391830 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 392166 392166 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C3:6 scaffold583 SAMTools SNP 392186 392186 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold583 SAMTools SNP 398423 398423 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 398722 398722 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 398732 398732 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 398743 398743 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 402279 402279 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold583 SAMTools SNP 405727 405727 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold583 SAMTools SNP 405847 405847 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C223:53 scaffold583 SAMTools SNP 406484 406484 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C45%2C0:87 scaffold583 SAMTools SNP 407929 407929 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold583 SAMTools SNP 412828 412828 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold583 SAMTools SNP 413291 413291 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C0%2C33%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold583 SAMTools SNP 414094 414094 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C11%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.56%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold583 SAMTools SNP 414103 414103 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold583 SAMTools SNP 414117 414117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold583 SAMTools SNP 414163 414163 34 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C47%2C38%2C63%2C0%2C60:16 scaffold583 SAMTools SNP 414176 414176 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold583 SAMTools SNP 414778 414778 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold583 SAMTools SNP 414806 414806 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold583 SAMTools SNP 415017 415017 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C225:71 scaffold583 SAMTools SNP 415077 415077 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 415553 415553 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold583 SAMTools SNP 415611 415611 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold583 SAMTools SNP 415614 415614 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold583 SAMTools SNP 416843 416843 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold583 SAMTools SNP 416851 416851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold583 SAMTools SNP 416863 416863 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold583 SAMTools SNP 417632 417632 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.12%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold583 SAMTools SNP 417683 417683 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold583 SAMTools SNP 418189 418189 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.051%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C233:83 scaffold583 SAMTools SNP 418195 418195 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C24%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C80:83 scaffold583 SAMTools SNP 418231 418231 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0220%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0038%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold583 SAMTools SNP 418258 418258 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold583 SAMTools SNP 420101 420101 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 420133 420133 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold583 SAMTools SNP 420867 420867 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C118:30 scaffold583 SAMTools SNP 420898 420898 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold583 SAMTools SNP 420992 420992 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold583 SAMTools SNP 421479 421479 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold583 SAMTools SNP 421516 421516 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 421552 421552 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold583 SAMTools SNP 422013 422013 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C21%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C240:99 scaffold583 SAMTools SNP 422073 422073 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D0.49%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C82%2C0:99 scaffold583 SAMTools SNP 422527 422527 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold583 SAMTools SNP 422545 422545 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold583 SAMTools SNP 423876 423876 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold583 SAMTools SNP 427214 427214 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold583 SAMTools SNP 427767 427767 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C73:76 scaffold583 SAMTools SNP 427788 427788 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold583 SAMTools SNP 427881 427881 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C45%2C0:86 scaffold583 SAMTools SNP 428838 428838 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold583 SAMTools SNP 429000 429000 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold583 SAMTools SNP 430980 430980 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold583 SAMTools SNP 431026 431026 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C18%2C0:33 scaffold583 SAMTools SNP 431105 431105 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C251:57 scaffold583 SAMTools SNP 431110 431110 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.52%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold583 SAMTools SNP 431608 431608 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.093%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold583 SAMTools SNP 432059 432059 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 432530 432530 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 433468 433468 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold583 SAMTools SNP 433764 433764 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold583 SAMTools SNP 436738 436738 98.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold583 SAMTools SNP 437085 437085 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 441427 441427 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold583 SAMTools SNP 443598 443598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 443610 443610 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.071%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold583 SAMTools SNP 443631 443631 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold583 SAMTools SNP 443670 443670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 444060 444060 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold583 SAMTools SNP 444062 444062 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold583 SAMTools SNP 444114 444114 85 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.46%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold583 SAMTools SNP 444162 444162 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold583 SAMTools SNP 444174 444174 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold583 SAMTools SNP 444177 444177 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C215:99 scaffold583 SAMTools SNP 445174 445174 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 445178 445178 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 445289 445289 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 445998 445998 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 446085 446085 50.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold583 SAMTools SNP 446112 446112 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 446148 446148 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold583 SAMTools SNP 472484 472484 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold583 SAMTools SNP 472706 472706 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold583 SAMTools SNP 475560 475560 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold583 SAMTools SNP 475582 475582 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.013%2C1%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold583 SAMTools SNP 475791 475791 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold583 SAMTools SNP 476931 476931 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold583 SAMTools SNP 476933 476933 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 477028 477028 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold583 SAMTools SNP 477458 477458 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 477645 477645 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 477646 477646 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 477849 477849 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C12%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0033%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold583 SAMTools SNP 477887 477887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold583 SAMTools SNP 477891 477891 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.044%2C0.21%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold583 SAMTools SNP 478124 478124 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 480267 480267 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 480335 480335 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 485125 485125 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold583 SAMTools SNP 518251 518251 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 518295 518295 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D72%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C154:99 scaffold583 SAMTools SNP 518522 518522 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D42%3BFQ%3D100%3BPV4%3D0.19%2C1%2C0.17%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C184:99 scaffold583 SAMTools SNP 518567 518567 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D38%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold583 SAMTools SNP 518991 518991 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 526095 526095 4.76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C5%3BMQ%3D10%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C255%2C0:42 scaffold583 SAMTools SNP 538745 538745 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C177:75 scaffold583 SAMTools SNP 538947 538947 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C77:46 scaffold583 SAMTools SNP 544041 544041 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C112:56 scaffold583 SAMTools SNP 544051 544051 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold583 SAMTools SNP 544662 544662 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.16%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C180:99 scaffold583 SAMTools SNP 569085 569085 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold583 SAMTools SNP 579344 579344 46.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold583 SAMTools SNP 581555 581555 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C1%2C3%2C2%3BMQ%3D20%3BFQ%3D-30%3BPV4%3D0.51%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C3%2C0:6 scaffold583 SAMTools SNP 583279 583279 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold583 SAMTools SNP 583313 583313 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C2e-09%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C187:86 scaffold583 SAMTools SNP 583624 583624 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C4.9e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C238:99 scaffold583 SAMTools SNP 583651 583651 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C33%2C0:63 scaffold583 SAMTools SNP 588224 588224 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 588791 588791 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold583 SAMTools SNP 591511 591511 168 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold583 SAMTools SNP 594512 594512 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 594522 594522 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold583 SAMTools SNP 594590 594590 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 594721 594721 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 596991 596991 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold583 SAMTools SNP 597993 597993 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 598026 598026 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold583 SAMTools SNP 598468 598468 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 598482 598482 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold583 SAMTools SNP 598517 598517 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 598525 598525 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 601158 601158 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold583 SAMTools SNP 602778 602778 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 602802 602802 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 603866 603866 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold583 SAMTools SNP 603887 603887 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.49%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold583 SAMTools SNP 603942 603942 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold583 SAMTools SNP 604719 604719 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 605060 605060 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 605514 605514 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 606646 606646 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold583 SAMTools SNP 606658 606658 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C219:91 scaffold583 SAMTools SNP 606706 606706 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold583 SAMTools SNP 607323 607323 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 607344 607344 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 608412 608412 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 641575 641575 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0005%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.077%2C6.9e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold583 SAMTools SNP 644930 644930 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.26%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold583 SAMTools SNP 645142 645142 22.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold583 SAMTools SNP 645387 645387 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C25%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.16%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 645549 645549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C27%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.00014%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 645554 645554 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C23%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 645573 645573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C21%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 652529 652529 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold583 SAMTools SNP 652579 652579 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C0.25%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold583 SAMTools SNP 653493 653493 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C35:38 scaffold583 SAMTools SNP 653499 653499 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold583 SAMTools SNP 653541 653541 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C149:85 scaffold583 SAMTools SNP 653553 653553 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold583 SAMTools SNP 654484 654484 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold583 SAMTools SNP 655033 655033 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold583 SAMTools SNP 655119 655119 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold583 SAMTools SNP 655961 655961 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D45%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold583 SAMTools SNP 656066 656066 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold583 SAMTools SNP 656113 656113 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 691165 691165 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 691547 691547 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold583 SAMTools SNP 691823 691823 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold583 SAMTools SNP 691888 691888 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C30%2C0:57 scaffold583 SAMTools SNP 693177 693177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold583 SAMTools SNP 693195 693195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold583 SAMTools SNP 693900 693900 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 693930 693930 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold583 SAMTools SNP 694212 694212 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 694215 694215 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 694230 694230 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.084%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold583 SAMTools SNP 694877 694877 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold583 SAMTools SNP 694927 694927 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold583 SAMTools SNP 695469 695469 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold583 SAMTools SNP 695524 695524 3.55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold583 SAMTools SNP 696776 696776 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 696779 696779 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 696851 696851 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold583 SAMTools SNP 697136 697136 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C23:26 scaffold583 SAMTools SNP 697174 697174 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold583 SAMTools SNP 697182 697182 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold583 SAMTools SNP 697897 697897 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold583 SAMTools SNP 698161 698161 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 698415 698415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 698429 698429 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold583 SAMTools SNP 699033 699033 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold583 SAMTools SNP 699039 699039 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold583 SAMTools SNP 699527 699527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.28%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold583 SAMTools SNP 699584 699584 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold583 SAMTools SNP 699607 699607 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold583 SAMTools SNP 699796 699796 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold583 SAMTools SNP 699952 699952 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold583 SAMTools SNP 700024 700024 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 700335 700335 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold583 SAMTools SNP 700395 700395 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.49%2C0.45%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C144:99 scaffold583 SAMTools SNP 700440 700440 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold583 SAMTools SNP 701086 701086 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C252:99 scaffold583 SAMTools SNP 701563 701563 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 702486 702486 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 702822 702822 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 705188 705188 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 705227 705227 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 705234 705234 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 707076 707076 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C133%2C106%2C116%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.077%2C1e-220%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold583 SAMTools SNP 708557 708557 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 710638 710638 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold583 SAMTools SNP 710643 710643 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C248:99 scaffold583 SAMTools SNP 712350 712350 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C77%2C0%2C25%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.37%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold583 SAMTools SNP 712823 712823 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C64%2C0%2C14%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold583 SAMTools SNP 715847 715847 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C8%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold583 SAMTools SNP 715868 715868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold583 SAMTools SNP 715901 715901 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold583 SAMTools SNP 715922 715922 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold583 SAMTools SNP 716728 716728 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C173:99 scaffold583 SAMTools SNP 717248 717248 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold583 SAMTools SNP 717275 717275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold583 SAMTools SNP 717674 717674 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold583 SAMTools SNP 718099 718099 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold583 SAMTools SNP 719096 719096 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold583 SAMTools SNP 719114 719114 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D40.3%3BPV4%3D0.4%2C0.44%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C69:70 scaffold583 SAMTools SNP 719131 719131 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C127:36 scaffold583 SAMTools SNP 719547 719547 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.25%2C0.00052%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold583 SAMTools SNP 719593 719593 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold583 SAMTools SNP 719611 719611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 725527 725527 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C247:99 scaffold583 SAMTools SNP 725774 725774 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C244:99 scaffold583 SAMTools SNP 726482 726482 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.14%2C0.45%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold583 SAMTools SNP 726799 726799 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.29%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold583 SAMTools SNP 726805 726805 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 726859 726859 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold583 SAMTools SNP 726889 726889 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C198:82 scaffold583 SAMTools SNP 726898 726898 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C247:76 scaffold583 SAMTools SNP 727306 727306 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C18%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold583 SAMTools SNP 727363 727363 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.14%2C1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold583 SAMTools SNP 727378 727378 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1.4e-14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C155:89 scaffold583 SAMTools SNP 727438 727438 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold583 SAMTools SNP 727453 727453 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold583 SAMTools SNP 728011 728011 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.091%2C0.018%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold583 SAMTools SNP 728361 728361 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold583 SAMTools SNP 728379 728379 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold583 SAMTools SNP 728415 728415 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold583 SAMTools SNP 728427 728427 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.33%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold583 SAMTools SNP 729186 729186 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 729976 729976 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 729982 729982 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 730060 730060 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 730078 730078 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold583 SAMTools SNP 732664 732664 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 735502 735502 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 735523 735523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 747342 747342 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold583 SAMTools SNP 751859 751859 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 752727 752727 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold583 SAMTools SNP 752796 752796 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 752921 752921 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 753686 753686 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold583 SAMTools SNP 753833 753833 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 753887 753887 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold583 SAMTools SNP 754744 754744 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C9.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C194:33 scaffold583 SAMTools SNP 754794 754794 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D27.8%3BPV4%3D1%2C0.0013%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C68:58 scaffold583 SAMTools SNP 762672 762672 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold583 SAMTools SNP 762976 762976 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C30%2C0:57 scaffold583 SAMTools SNP 763005 763005 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold583 SAMTools SNP 763397 763397 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold583 SAMTools SNP 763486 763486 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D0.36%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C83%2C0:99 scaffold583 SAMTools SNP 764035 764035 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C4%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 764074 764074 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C3%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold583 SAMTools SNP 764098 764098 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.37%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 764614 764614 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold583 SAMTools SNP 765454 765454 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold583 SAMTools SNP 765455 765455 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold583 SAMTools SNP 765851 765851 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold583 SAMTools SNP 765956 765956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold583 SAMTools SNP 765971 765971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold583 SAMTools SNP 766853 766853 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold583 SAMTools SNP 766895 766895 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.27%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold583 SAMTools SNP 766949 766949 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.25%2C0.13%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold583 SAMTools SNP 767516 767516 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 767562 767562 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C32%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0068%2C1.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold583 SAMTools SNP 767577 767577 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D40%2C5%2C31%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.075%2C8.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold583 SAMTools SNP 767688 767688 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C3%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.44%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 768570 768570 199 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold583 SAMTools SNP 769129 769129 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold583 SAMTools SNP 769131 769131 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 769169 769169 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold583 SAMTools SNP 769329 769329 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C70%2C0%2C38%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold583 SAMTools SNP 773750 773750 153 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C31%2C23%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D5.6e-06%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold583 SAMTools SNP 775011 775011 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C0%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 775023 775023 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 776258 776258 33.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold583 SAMTools SNP 776285 776285 75.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold583 SAMTools SNP 777878 777878 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 778219 778219 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C18%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.039%2C6.1e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold583 SAMTools SNP 778232 778232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C12%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 778283 778283 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 795646 795646 34.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold583 SAMTools SNP 795740 795740 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold583 SAMTools SNP 795748 795748 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold583 SAMTools SNP 796143 796143 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold583 SAMTools SNP 796572 796572 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold583 SAMTools SNP 796611 796611 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 796644 796644 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold583 SAMTools SNP 799023 799023 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold583 SAMTools SNP 799044 799044 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 799297 799297 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 799336 799336 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold583 SAMTools SNP 799384 799384 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold583 SAMTools SNP 799405 799405 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold583 SAMTools SNP 801974 801974 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold583 SAMTools SNP 801977 801977 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold583 SAMTools SNP 802085 802085 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D48.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C76:79 scaffold583 SAMTools SNP 802112 802112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C19%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold583 SAMTools SNP 804328 804328 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold583 SAMTools SNP 804343 804343 17.1 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold583 SAMTools SNP 804610 804610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold583 SAMTools SNP 804682 804682 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold583 SAMTools SNP 805351 805351 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.083%2C2.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C66:47 scaffold583 SAMTools SNP 805435 805435 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C21%2C0:39 scaffold583 SAMTools SNP 806026 806026 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C2.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C154:99 scaffold583 SAMTools SNP 806089 806089 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold583 SAMTools SNP 806143 806143 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C30%2C0:57 scaffold583 SAMTools SNP 806185 806185 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C57%2C0:99 scaffold583 SAMTools SNP 806260 806260 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold583 SAMTools SNP 807149 807149 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 809338 809338 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold583 SAMTools SNP 809833 809833 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 810199 810199 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 810226 810226 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C50%2C24%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 810523 810523 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 811470 811470 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold583 SAMTools SNP 811493 811493 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold583 SAMTools SNP 811496 811496 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold583 SAMTools SNP 813542 813542 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C12%2C15%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold583 SAMTools SNP 813545 813545 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C14%2C15%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold583 SAMTools SNP 814063 814063 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold583 SAMTools SNP 814083 814083 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold583 SAMTools SNP 814177 814177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold583 SAMTools SNP 814580 814580 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold583 SAMTools SNP 814582 814582 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.00018%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C240:99 scaffold583 SAMTools SNP 814905 814905 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.52%2C1%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold583 SAMTools SNP 814970 814970 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.31%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold583 SAMTools SNP 815227 815227 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.27%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold583 SAMTools SNP 815229 815229 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.0026%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold583 SAMTools SNP 815783 815783 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C51%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.00015%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 815813 815813 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C61%2C1%2C14%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.48%2C2.7e-11%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold583 SAMTools SNP 815819 815819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold583 SAMTools SNP 815858 815858 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C59%2C0%2C15%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C229:99 scaffold583 SAMTools SNP 816169 816169 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C15%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold583 SAMTools SNP 816215 816215 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.39%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold583 SAMTools SNP 816553 816553 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold583 SAMTools SNP 816649 816649 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C44%2C0%2C26%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.16%2C2.2e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold583 SAMTools SNP 816727 816727 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold583 SAMTools SNP 816754 816754 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C7%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold583 SAMTools SNP 817007 817007 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C19%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 817221 817221 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C16%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 817293 817293 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold583 SAMTools SNP 824855 824855 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold583 SAMTools SNP 828297 828297 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold583 SAMTools SNP 828788 828788 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C0.045%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 828800 828800 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00089%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 829304 829304 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold583 SAMTools SNP 829307 829307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold583 SAMTools SNP 829500 829500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold583 SAMTools SNP 829605 829605 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C59%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold583 SAMTools SNP 829614 829614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C12%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 829617 829617 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C11%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 830397 830397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C59%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 830433 830433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold583 SAMTools SNP 830461 830461 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C45%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold583 SAMTools SNP 830469 830469 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 830844 830844 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold583 SAMTools SNP 833740 833740 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 834296 834296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C68%2C26%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 834783 834783 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C52%2C95%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold583 SAMTools SNP 834837 834837 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C14%2C15%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.49%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold583 SAMTools SNP 834885 834885 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C54%2C5%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 838708 838708 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold583 SAMTools SNP 838725 838725 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold583 SAMTools SNP 839079 839079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold583 SAMTools SNP 839852 839852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C45%2C32%3BMQ%3D50%3BFQ%3D-168%3BPV4%3D0.51%2C0.19%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold583 SAMTools SNP 839882 839882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C32%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 841464 841464 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C11%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 841566 841566 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold583 SAMTools SNP 841964 841964 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 842036 842036 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold583 SAMTools SNP 842291 842291 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.43%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 842309 842309 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 842348 842348 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C0%2C12%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0011%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold583 SAMTools SNP 842354 842354 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C1%2C13%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.00041%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold583 SAMTools SNP 842635 842635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D0.15%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold583 SAMTools SNP 843242 843242 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C16%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.54%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold583 SAMTools SNP 843248 843248 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C16%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold583 SAMTools SNP 843290 843290 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold583 SAMTools SNP 843832 843832 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold583 SAMTools SNP 846267 846267 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C4.5e-16%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold583 SAMTools SNP 846285 846285 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 846958 846958 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C2%2C13%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.25%2C1.8e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold583 SAMTools SNP 846982 846982 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C6%2C3%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.13%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold583 SAMTools SNP 847203 847203 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C1%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold583 SAMTools SNP 847717 847717 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold583 SAMTools SNP 855089 855089 93.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C12%2C0:21 scaffold583 SAMTools SNP 855227 855227 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold583 SAMTools SNP 855590 855590 94.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0:39 scaffold585 SAMTools SNP 468 468 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold585 SAMTools SNP 473 473 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold585 SAMTools SNP 22583 22583 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold585 SAMTools SNP 22614 22614 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C210:60 scaffold585 SAMTools SNP 24148 24148 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C2%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold585 SAMTools SNP 24184 24184 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold585 SAMTools SNP 24232 24232 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C2%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold585 SAMTools SNP 24553 24553 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C8%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.021%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold585 SAMTools SNP 24581 24581 147 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold585 SAMTools SNP 36361 36361 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.44%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 36648 36648 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C17%2C35%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 38942 38942 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C21%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-05%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 39083 39083 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold585 SAMTools SNP 39504 39504 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C15%2C4%2C6%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold585 SAMTools SNP 39561 39561 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C18%2C4%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold585 SAMTools SNP 40237 40237 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C52%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 40525 40525 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.089%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 40572 40572 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C53%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 40841 40841 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C0.018%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 40868 40868 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 41211 41211 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 41804 41804 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold585 SAMTools SNP 41846 41846 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold585 SAMTools SNP 41852 41852 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold585 SAMTools SNP 42537 42537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C5%2C19%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.65%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold585 SAMTools SNP 43691 43691 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C23%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C223:99 scaffold585 SAMTools SNP 45129 45129 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold585 SAMTools SNP 45130 45130 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold585 SAMTools SNP 52078 52078 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.066%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold585 SAMTools SNP 52081 52081 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold585 SAMTools SNP 52277 52277 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.12%2C4.1e-07%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold585 SAMTools SNP 52282 52282 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C25%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.00048%2C0.027%2C1%2C7.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C148:99 scaffold585 SAMTools SNP 52739 52739 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold585 SAMTools SNP 53128 53128 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold585 SAMTools SNP 53634 53634 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold585 SAMTools SNP 53646 53646 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold585 SAMTools SNP 54347 54347 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold585 SAMTools SNP 54360 54360 218 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold585 SAMTools SNP 54697 54697 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold585 SAMTools SNP 54707 54707 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold585 SAMTools SNP 54793 54793 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold585 SAMTools SNP 54794 54794 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold585 SAMTools SNP 54796 54796 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold585 SAMTools SNP 54805 54805 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold585 SAMTools SNP 55092 55092 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C18%2C0:33 scaffold585 SAMTools SNP 55125 55125 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold585 SAMTools SNP 55206 55206 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.13%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C250:99 scaffold585 SAMTools SNP 55514 55514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold585 SAMTools SNP 55676 55676 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C57%2C4%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.012%2C0.057%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold585 SAMTools SNP 56514 56514 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold585 SAMTools SNP 56547 56547 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 57312 57312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 57503 57503 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 57596 57596 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0042%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold585 SAMTools SNP 58387 58387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold585 SAMTools SNP 58996 58996 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C5%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold585 SAMTools SNP 59367 59367 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0072%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold585 SAMTools SNP 59402 59402 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.29%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold585 SAMTools SNP 59620 59620 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C243:99 scaffold585 SAMTools SNP 65728 65728 9.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold585 SAMTools SNP 66718 66718 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold585 SAMTools SNP 67254 67254 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold585 SAMTools SNP 67762 67762 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold585 SAMTools SNP 67774 67774 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.61%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold585 SAMTools SNP 69024 69024 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold585 SAMTools SNP 73298 73298 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold585 SAMTools SNP 73338 73338 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold585 SAMTools SNP 77532 77532 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold585 SAMTools SNP 77934 77934 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold585 SAMTools SNP 78031 78031 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold585 SAMTools SNP 78420 78420 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold585 SAMTools SNP 82804 82804 43.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold585 SAMTools SNP 82837 82837 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold585 SAMTools SNP 87340 87340 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold585 SAMTools SNP 87834 87834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold585 SAMTools SNP 87882 87882 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold585 SAMTools SNP 88182 88182 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.49%2C6.7e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C152:77 scaffold585 SAMTools SNP 88191 88191 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C159:99 scaffold585 SAMTools SNP 92144 92144 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold585 SAMTools SNP 92186 92186 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold585 SAMTools SNP 92889 92889 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C102:80 scaffold585 SAMTools SNP 92913 92913 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold585 SAMTools SNP 93463 93463 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold585 SAMTools SNP 93496 93496 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0056%2C6.9e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold585 SAMTools SNP 93512 93512 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C20%2C0%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.032%2C0.00043%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold585 SAMTools SNP 93547 93547 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold585 SAMTools SNP 94036 94036 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold585 SAMTools SNP 94048 94048 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C15%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.001%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C152:99 scaffold585 SAMTools SNP 101945 101945 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C0.42%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold585 SAMTools SNP 102036 102036 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.022%2C0.00066%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold585 SAMTools SNP 102413 102413 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C12%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold585 SAMTools SNP 102430 102430 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C181:99 scaffold585 SAMTools SNP 102471 102471 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.033%2C0.077%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C224:80 scaffold585 SAMTools SNP 102541 102541 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold585 SAMTools SNP 102586 102586 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold585 SAMTools SNP 110039 110039 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold585 SAMTools SNP 112115 112115 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.4%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold585 SAMTools SNP 116248 116248 42.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold585 SAMTools SNP 116921 116921 41.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold585 SAMTools SNP 116970 116970 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.14%2C8.4e-09%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C107:39 scaffold585 SAMTools SNP 118157 118157 27.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold585 SAMTools SNP 119219 119219 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold585 SAMTools SNP 119279 119279 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold585 SAMTools SNP 119611 119611 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C208:79 scaffold585 SAMTools SNP 120016 120016 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C21%2C0:39 scaffold585 SAMTools SNP 120025 120025 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.48%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold585 SAMTools SNP 120720 120720 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.11%2C0.012%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold585 SAMTools SNP 120741 120741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold585 SAMTools SNP 121153 121153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold585 SAMTools SNP 121187 121187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold585 SAMTools SNP 121408 121408 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.023%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C191:39 scaffold585 SAMTools SNP 121737 121737 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C119:99 scaffold585 SAMTools SNP 123330 123330 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold585 SAMTools SNP 123447 123447 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold585 SAMTools SNP 123510 123510 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.63%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold585 SAMTools SNP 125599 125599 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold585 SAMTools SNP 125614 125614 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold585 SAMTools SNP 126185 126185 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold585 SAMTools SNP 126215 126215 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.26%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold585 SAMTools SNP 126523 126523 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold585 SAMTools SNP 127038 127038 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.12%2C4.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold585 SAMTools SNP 127059 127059 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C9.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold585 SAMTools SNP 128912 128912 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C0.079%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C212:99 scaffold585 SAMTools SNP 129215 129215 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 12659 12659 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold586 SAMTools SNP 12693 12693 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold586 SAMTools SNP 13771 13771 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold586 SAMTools SNP 17136 17136 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold586 SAMTools SNP 17156 17156 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.4%2C0.038%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold586 SAMTools SNP 17345 17345 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold586 SAMTools SNP 38456 38456 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold586 SAMTools SNP 38808 38808 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C69%2C0:99 scaffold586 SAMTools SNP 39206 39206 12.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold586 SAMTools SNP 39293 39293 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold586 SAMTools SNP 39329 39329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold586 SAMTools SNP 39561 39561 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 39578 39578 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold586 SAMTools SNP 39793 39793 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold586 SAMTools SNP 39907 39907 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C16%2C43%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 40362 40362 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 40400 40400 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C45%2C45%3BMQ%3D50%3BFQ%3D-258%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C231%2C0:99 scaffold586 SAMTools SNP 40842 40842 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C54%2C0:99 scaffold586 SAMTools SNP 40878 40878 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold586 SAMTools SNP 40899 40899 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold586 SAMTools SNP 41768 41768 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 41771 41771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 41831 41831 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold586 SAMTools SNP 41834 41834 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold586 SAMTools SNP 41867 41867 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.48%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold586 SAMTools SNP 43184 43184 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C66%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold586 SAMTools SNP 43261 43261 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.066%2C0.03%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold586 SAMTools SNP 43262 43262 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.066%2C0.077%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold586 SAMTools SNP 45260 45260 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C28%2C7%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.2%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold586 SAMTools SNP 45301 45301 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.11%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold586 SAMTools SNP 45302 45302 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.058%2C0.27%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold586 SAMTools SNP 45314 45314 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold586 SAMTools SNP 45428 45428 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0027%2C0.46%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold586 SAMTools SNP 45440 45440 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C11%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D0.34%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold586 SAMTools SNP 45845 45845 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold586 SAMTools SNP 45857 45857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold586 SAMTools SNP 46258 46258 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D22%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.001%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold586 SAMTools SNP 48809 48809 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C41%2C4%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.73%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold586 SAMTools SNP 50118 50118 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C51%2C23%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 50145 50145 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C74%2C2%2C11%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold586 SAMTools SNP 50193 50193 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 51113 51113 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold586 SAMTools SNP 54410 54410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold586 SAMTools SNP 54470 54470 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.6%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold586 SAMTools SNP 54980 54980 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold586 SAMTools SNP 55065 55065 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold586 SAMTools SNP 55068 55068 88 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold586 SAMTools SNP 55936 55936 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold586 SAMTools SNP 56085 56085 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold586 SAMTools SNP 56087 56087 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C97:99 scaffold586 SAMTools SNP 56830 56830 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.22%2C3.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C226:99 scaffold586 SAMTools SNP 57259 57259 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.48%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold586 SAMTools SNP 57271 57271 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold586 SAMTools SNP 57304 57304 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold586 SAMTools SNP 57307 57307 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.087%2C0.028%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold586 SAMTools SNP 57313 57313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold586 SAMTools SNP 57779 57779 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C33%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 58236 58236 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold586 SAMTools SNP 58258 58258 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.039%2C0.00015%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold586 SAMTools SNP 58591 58591 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold586 SAMTools SNP 60342 60342 44.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold586 SAMTools SNP 60408 60408 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold586 SAMTools SNP 60456 60456 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold586 SAMTools SNP 64158 64158 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold586 SAMTools SNP 64180 64180 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C29:32 scaffold586 SAMTools SNP 66362 66362 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C69:72 scaffold586 SAMTools SNP 66431 66431 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold586 SAMTools SNP 69442 69442 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold586 SAMTools SNP 69535 69535 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.56%2C3.1e-08%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold586 SAMTools SNP 69562 69562 84.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold586 SAMTools SNP 69595 69595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold586 SAMTools SNP 69601 69601 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold586 SAMTools SNP 80050 80050 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 99920 99920 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold586 SAMTools SNP 114278 114278 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold586 SAMTools SNP 116005 116005 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 116027 116027 222 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0%2C244%2C22%2C241:99 scaffold586 SAMTools SNP 117024 117024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C198%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 117096 117096 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C23%2C170%3BMQ%3D50%3BFQ%3D50%3BPV4%3D3.3e-24%2C9.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold586 SAMTools SNP 117629 117629 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C30%2C2%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold586 SAMTools SNP 117632 117632 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C30%2C2%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold586 SAMTools SNP 117680 117680 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C16%2C3%2C9%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0093%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold586 SAMTools SNP 118274 118274 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C3%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.039%2C0.039%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold586 SAMTools SNP 118326 118326 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C229:40 scaffold586 SAMTools SNP 119560 119560 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C0%2C109%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 119588 119588 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C20%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-19%2C0.00046%2C1%2C9.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 119639 119639 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C174%2C1%2C70%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C1%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold586 SAMTools SNP 120449 120449 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C12%2C0%2C37%3BMQ%3D50%3BFQ%3D157%3BPV4%3D4.5e-22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold586 SAMTools SNP 120863 120863 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 123293 123293 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C84%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold586 SAMTools SNP 123309 123309 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 126362 126362 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 126363 126363 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-158%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C131%2C0:99 scaffold586 SAMTools SNP 126392 126392 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold586 SAMTools SNP 126402 126402 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C1%2C44%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 127265 127265 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C82%2C0%2C42%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold586 SAMTools SNP 127549 127549 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C80%2C0%2C42%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold586 SAMTools SNP 127822 127822 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C114%2C0:99 scaffold586 SAMTools SNP 129025 129025 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C105%2C0:99 scaffold586 SAMTools SNP 129219 129219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold586 SAMTools SNP 130096 130096 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C3%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.37%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 131011 131011 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C17%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C4.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C216:80 scaffold586 SAMTools SNP 134069 134069 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold586 SAMTools SNP 134084 134084 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold586 SAMTools SNP 134275 134275 59 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.46%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C10%2C31%2C67%2C0%2C98:24 scaffold586 SAMTools SNP 134342 134342 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D24.8%3BPV4%3D0.17%2C9.3e-13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C64:55 scaffold586 SAMTools SNP 134912 134912 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 134920 134920 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 143832 143832 85 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C86%2C77%2C118%2C0%2C112:16 scaffold586 SAMTools SNP 144793 144793 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.42%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold586 SAMTools SNP 144924 144924 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 145311 145311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C12%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.18%2C0.014%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold586 SAMTools SNP 145994 145994 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold586 SAMTools SNP 147127 147127 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.14%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C167:89 scaffold586 SAMTools SNP 147487 147487 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold586 SAMTools SNP 147532 147532 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold586 SAMTools SNP 147913 147913 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.074%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold586 SAMTools SNP 147931 147931 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 148390 148390 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold586 SAMTools SNP 149133 149133 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold586 SAMTools SNP 149920 149920 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold586 SAMTools SNP 149926 149926 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 150199 150199 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C246:99 scaffold586 SAMTools SNP 150695 150695 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold586 SAMTools SNP 151441 151441 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold586 SAMTools SNP 151442 151442 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold586 SAMTools SNP 152562 152562 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold586 SAMTools SNP 152567 152567 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.023%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold586 SAMTools SNP 152654 152654 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold586 SAMTools SNP 152672 152672 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold586 SAMTools SNP 153445 153445 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold586 SAMTools SNP 154384 154384 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold586 SAMTools SNP 154447 154447 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0104%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold586 SAMTools SNP 154998 154998 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.47%2C0.00049%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C238:69 scaffold586 SAMTools SNP 155952 155952 6.17 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold586 SAMTools SNP 156042 156042 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.24%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C221:99 scaffold586 SAMTools SNP 157253 157253 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold586 SAMTools SNP 157256 157256 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold586 SAMTools SNP 163149 163149 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold586 SAMTools SNP 163952 163952 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold586 SAMTools SNP 163964 163964 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold586 SAMTools SNP 164868 164868 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold586 SAMTools SNP 165199 165199 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold586 SAMTools SNP 166019 166019 96.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold586 SAMTools SNP 166052 166052 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0002%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C71:74 scaffold586 SAMTools SNP 170195 170195 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 170561 170561 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 199176 199176 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold586 SAMTools SNP 199440 199440 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 205884 205884 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold586 SAMTools SNP 210022 210022 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C71%2C11%2C92%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-05%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 210709 210709 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C20%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C0.1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 211376 211376 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C15%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.0007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold586 SAMTools SNP 211381 211381 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C16%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold586 SAMTools SNP 211383 211383 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00025%2C0.37%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold586 SAMTools SNP 213654 213654 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C11%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 213735 213735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C349%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 213771 213771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C535%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 215454 215454 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C235%2C248%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 215487 215487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C422%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 215916 215916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D482%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C362%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 215955 215955 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C152%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 215976 215976 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C6%2C1%2C29%3BMQ%3D47%3BFQ%3D209%3BPV4%3D1.4e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold586 SAMTools SNP 215988 215988 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C8%2C37%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.071%2C0.47%2C1%2C4.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold586 SAMTools SNP 215994 215994 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C29%2C46%3BMQ%3D50%3BFQ%3D170%3BPV4%3D5e-05%2C0.21%2C1%2C6.8e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold586 SAMTools SNP 216636 216636 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C8%3BMQ%3D37%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold586 SAMTools SNP 217433 217433 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C69%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 218025 218025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold586 SAMTools SNP 220706 220706 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D164%3BPV4%3D8.1e-05%2C9.9e-10%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold586 SAMTools SNP 221050 221050 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C48%2C0:93 scaffold586 SAMTools SNP 221063 221063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold586 SAMTools SNP 221480 221480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 222259 222259 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 223546 223546 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold586 SAMTools SNP 223549 223549 51.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold586 SAMTools SNP 223860 223860 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.08%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C25:28 scaffold586 SAMTools SNP 223866 223866 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.08%2C0.27%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C25:28 scaffold586 SAMTools SNP 223929 223929 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold586 SAMTools SNP 224721 224721 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold586 SAMTools SNP 225591 225591 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold586 SAMTools SNP 225625 225625 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold586 SAMTools SNP 227993 227993 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C241:99 scaffold586 SAMTools SNP 228441 228441 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C237:99 scaffold586 SAMTools SNP 228708 228708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C4%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold586 SAMTools SNP 229068 229068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold586 SAMTools SNP 229114 229114 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold586 SAMTools SNP 229371 229371 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold586 SAMTools SNP 229383 229383 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold586 SAMTools SNP 229485 229485 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C46%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold586 SAMTools SNP 230840 230840 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.032%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 230873 230873 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C0.22%2C1%2C4.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 231023 231023 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold586 SAMTools SNP 231025 231025 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold586 SAMTools SNP 233314 233314 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold586 SAMTools SNP 233386 233386 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 233410 233410 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 235817 235817 59.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C18%2C0:33 scaffold586 SAMTools SNP 240980 240980 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold586 SAMTools SNP 242170 242170 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold586 SAMTools SNP 252942 252942 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold586 SAMTools SNP 259530 259530 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold586 SAMTools SNP 259553 259553 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold586 SAMTools SNP 259686 259686 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C42%2C0:80 scaffold586 SAMTools SNP 284603 284603 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 289619 289619 8.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold586 SAMTools SNP 290240 290240 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold586 SAMTools SNP 291486 291486 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 296873 296873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold586 SAMTools SNP 309378 309378 12.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold586 SAMTools SNP 315613 315613 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 315627 315627 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 317061 317061 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C222:56 scaffold586 SAMTools SNP 319629 319629 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold586 SAMTools SNP 319696 319696 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold586 SAMTools SNP 323949 323949 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C77%2C9%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.024%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 324072 324072 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C25%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold586 SAMTools SNP 326995 326995 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C1%2C5%3BMQ%3D49%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold586 SAMTools SNP 327088 327088 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.054%2C0.058%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 328135 328135 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.23%2C0.29%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold586 SAMTools SNP 328145 328145 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold586 SAMTools SNP 328162 328162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 328927 328927 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C0%2C17%3BMQ%3D50%3BFQ%3D52%3BPV4%3D9.2e-05%2C1.6e-07%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold586 SAMTools SNP 332521 332521 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C8%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold586 SAMTools SNP 332524 332524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold586 SAMTools SNP 332572 332572 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold586 SAMTools SNP 337062 337062 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C65%2C0%2C49%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1.8e-08%2C1.2e-13%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold586 SAMTools SNP 337101 337101 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C75%2C5%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 337392 337392 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C21%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 337454 337454 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0046%2C0.00081%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold586 SAMTools SNP 337466 337466 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C0%2C7%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C0.024%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold586 SAMTools SNP 337914 337914 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C20%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 338151 338151 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold586 SAMTools SNP 338826 338826 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold586 SAMTools SNP 338829 338829 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold586 SAMTools SNP 338931 338931 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 338949 338949 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold586 SAMTools SNP 338973 338973 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold586 SAMTools SNP 339244 339244 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C8%2C100%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-50%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 339262 339262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C9%2C78%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C5.6e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 340073 340073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 340094 340094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C199%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 340783 340783 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0043%2C1%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C140:99 scaffold586 SAMTools SNP 340786 340786 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.00076%2C0.00066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C214:96 scaffold586 SAMTools SNP 341047 341047 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 341056 341056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.013%2C0.47%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold586 SAMTools SNP 341428 341428 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C41%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.24%2C0.08%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold586 SAMTools SNP 341599 341599 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold586 SAMTools SNP 341623 341623 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C7%2C25%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.55%2C9.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C37:40 scaffold586 SAMTools SNP 341707 341707 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold586 SAMTools SNP 342286 342286 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 342297 342297 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C16%2C1%2C39%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1.4e-20%2C1.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold586 SAMTools SNP 342967 342967 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C93%2C28%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 343047 343047 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 343320 343320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C32%2C18%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 343368 343368 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C44%2C2%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C1%2C1%2C6.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 343377 343377 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C13%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.00068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 343380 343380 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.015%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold586 SAMTools SNP 343861 343861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 343870 343870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold586 SAMTools SNP 353828 353828 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 353889 353889 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold586 SAMTools SNP 367181 367181 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold586 SAMTools SNP 379205 379205 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.19%2C0.36%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold586 SAMTools SNP 379473 379473 42.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold586 SAMTools SNP 380274 380274 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold586 SAMTools SNP 380305 380305 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold586 SAMTools SNP 381949 381949 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold586 SAMTools SNP 385514 385514 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C17%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold586 SAMTools SNP 385525 385525 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.63%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold586 SAMTools SNP 387450 387450 181 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C26%2C0%2C17%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.023%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold586 SAMTools SNP 387531 387531 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.14%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold586 SAMTools SNP 387546 387546 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold586 SAMTools SNP 388991 388991 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C1%3BMQ%3D48%3BFQ%3D123%3BPV4%3D0.056%2C1%2C0.24%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold586 SAMTools SNP 389015 389015 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.67%2C0.26%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 389579 389579 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold586 SAMTools SNP 399205 399205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold586 SAMTools SNP 412684 412684 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold586 SAMTools SNP 412750 412750 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C1%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold586 SAMTools SNP 415048 415048 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.16%2C0.27%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold586 SAMTools SNP 415078 415078 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold586 SAMTools SNP 415084 415084 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.2%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold586 SAMTools SNP 415087 415087 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.47%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold586 SAMTools SNP 419365 419365 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold586 SAMTools SNP 419937 419937 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C19%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 426625 426625 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.00027%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold586 SAMTools SNP 426663 426663 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold586 SAMTools SNP 428345 428345 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold586 SAMTools SNP 428375 428375 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold586 SAMTools SNP 429321 429321 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C175:99 scaffold586 SAMTools SNP 435062 435062 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold586 SAMTools SNP 435080 435080 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold586 SAMTools SNP 435128 435128 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 435858 435858 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 436118 436118 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold586 SAMTools SNP 436863 436863 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold586 SAMTools SNP 436910 436910 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D1%2C0.00035%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold586 SAMTools SNP 445952 445952 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold586 SAMTools SNP 445958 445958 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold586 SAMTools SNP 447338 447338 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold586 SAMTools SNP 448509 448509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C9%2C10%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold586 SAMTools SNP 448533 448533 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 449588 449588 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C23%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold586 SAMTools SNP 450274 450274 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 451381 451381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.024%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 451414 451414 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 451789 451789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold586 SAMTools SNP 453067 453067 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold586 SAMTools SNP 453078 453078 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold586 SAMTools SNP 455921 455921 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 456341 456341 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold586 SAMTools SNP 456428 456428 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold586 SAMTools SNP 456432 456432 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold586 SAMTools SNP 457731 457731 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold586 SAMTools SNP 458719 458719 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold586 SAMTools SNP 458737 458737 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 458750 458750 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold586 SAMTools SNP 458800 458800 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold586 SAMTools SNP 458803 458803 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.25%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold586 SAMTools SNP 461038 461038 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold586 SAMTools SNP 461061 461061 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold586 SAMTools SNP 461080 461080 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C11%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold586 SAMTools SNP 461103 461103 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C3%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.66%2C0.063%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold586 SAMTools SNP 461544 461544 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold586 SAMTools SNP 462075 462075 182 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.11%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold586 SAMTools SNP 466757 466757 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C201:99 scaffold586 SAMTools SNP 466798 466798 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 478301 478301 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 478671 478671 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 478727 478727 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 496046 496046 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold586 SAMTools SNP 496194 496194 12.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold586 SAMTools SNP 497027 497027 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold586 SAMTools SNP 497052 497052 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold586 SAMTools SNP 497077 497077 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold586 SAMTools SNP 497663 497663 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold586 SAMTools SNP 505181 505181 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold586 SAMTools SNP 513137 513137 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C3.8e-11%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold586 SAMTools SNP 516467 516467 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 516483 516483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold586 SAMTools SNP 517447 517447 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold586 SAMTools SNP 517450 517450 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C70:73 scaffold586 SAMTools SNP 517486 517486 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold587 SAMTools SNP 4164 4164 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 4177 4177 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 4331 4331 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 4336 4336 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 4386 4386 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C35:38 scaffold587 SAMTools SNP 5212 5212 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold587 SAMTools SNP 5228 5228 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold587 SAMTools SNP 5254 5254 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold587 SAMTools SNP 7366 7366 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C15%2C19%2C15%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.36%2C8e-51%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold587 SAMTools SNP 7762 7762 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold587 SAMTools SNP 7776 7776 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C60%2C0:99 scaffold587 SAMTools SNP 8712 8712 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold587 SAMTools SNP 9346 9346 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold587 SAMTools SNP 10053 10053 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 12987 12987 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold587 SAMTools SNP 14313 14313 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C18%2C0:33 scaffold587 SAMTools SNP 14371 14371 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C24%2C0:45 scaffold587 SAMTools SNP 15299 15299 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold587 SAMTools SNP 17094 17094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold587 SAMTools SNP 17266 17266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold587 SAMTools SNP 17853 17853 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 17871 17871 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 17877 17877 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold587 SAMTools SNP 19278 19278 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold587 SAMTools SNP 19717 19717 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.097%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 19793 19793 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold587 SAMTools SNP 20563 20563 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold587 SAMTools SNP 24595 24595 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold587 SAMTools SNP 25029 25029 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold587 SAMTools SNP 25188 25188 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 26155 26155 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 26182 26182 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 26587 26587 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold587 SAMTools SNP 26772 26772 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold587 SAMTools SNP 27195 27195 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold587 SAMTools SNP 27232 27232 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold587 SAMTools SNP 27486 27486 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 27536 27536 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 27992 27992 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 28601 28601 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 30202 30202 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold587 SAMTools SNP 30610 30610 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold587 SAMTools SNP 30635 30635 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.052%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold587 SAMTools SNP 30652 30652 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.022%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold587 SAMTools SNP 30661 30661 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold587 SAMTools SNP 31528 31528 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold587 SAMTools SNP 31644 31644 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold587 SAMTools SNP 31662 31662 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold587 SAMTools SNP 31713 31713 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold587 SAMTools SNP 31768 31768 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C21%2C4%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.19%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C28%2C0:53 scaffold587 SAMTools SNP 31829 31829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold587 SAMTools SNP 32243 32243 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold587 SAMTools SNP 32272 32272 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold587 SAMTools SNP 32629 32629 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 32821 32821 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 32839 32839 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold587 SAMTools SNP 32920 32920 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold587 SAMTools SNP 33448 33448 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold587 SAMTools SNP 33651 33651 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold587 SAMTools SNP 33663 33663 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold587 SAMTools SNP 33667 33667 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold587 SAMTools SNP 33681 33681 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 33783 33783 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.055%2C7.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C97:58 scaffold587 SAMTools SNP 34148 34148 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold587 SAMTools SNP 34315 34315 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 34321 34321 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 34738 34738 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold587 SAMTools SNP 34766 34766 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 34885 34885 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 34936 34936 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold587 SAMTools SNP 34939 34939 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.036%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold587 SAMTools SNP 35269 35269 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold587 SAMTools SNP 35766 35766 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 35905 35905 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 35999 35999 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold587 SAMTools SNP 36046 36046 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold587 SAMTools SNP 36837 36837 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold587 SAMTools SNP 36948 36948 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold587 SAMTools SNP 36972 36972 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold587 SAMTools SNP 37139 37139 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold587 SAMTools SNP 37175 37175 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold587 SAMTools SNP 37349 37349 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold587 SAMTools SNP 37379 37379 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold587 SAMTools SNP 37516 37516 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold587 SAMTools SNP 37571 37571 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 37607 37607 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold587 SAMTools SNP 37640 37640 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold587 SAMTools SNP 37844 37844 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold587 SAMTools SNP 38307 38307 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold587 SAMTools SNP 38632 38632 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold587 SAMTools SNP 39624 39624 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 39627 39627 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 39957 39957 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold587 SAMTools SNP 39968 39968 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold587 SAMTools SNP 39971 39971 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C163:99 scaffold587 SAMTools SNP 40013 40013 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C182:99 scaffold587 SAMTools SNP 40258 40258 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.055%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 40285 40285 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold587 SAMTools SNP 40381 40381 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold587 SAMTools SNP 40393 40393 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold587 SAMTools SNP 40426 40426 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold587 SAMTools SNP 40605 40605 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 41016 41016 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold587 SAMTools SNP 41019 41019 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.042%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold587 SAMTools SNP 41073 41073 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold587 SAMTools SNP 41136 41136 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold587 SAMTools SNP 41163 41163 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.12%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold587 SAMTools SNP 41341 41341 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold587 SAMTools SNP 41343 41343 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold587 SAMTools SNP 41411 41411 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 41926 41926 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 42186 42186 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C20:23 scaffold587 SAMTools SNP 42256 42256 75.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold587 SAMTools SNP 42271 42271 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold587 SAMTools SNP 42278 42278 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.19%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C157:42 scaffold587 SAMTools SNP 42319 42319 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold587 SAMTools SNP 42641 42641 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold587 SAMTools SNP 42679 42679 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0014%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold587 SAMTools SNP 42698 42698 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold587 SAMTools SNP 42938 42938 45.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold587 SAMTools SNP 43061 43061 88 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold587 SAMTools SNP 44021 44021 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C15%2C0:27 scaffold587 SAMTools SNP 44072 44072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold587 SAMTools SNP 44102 44102 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold587 SAMTools SNP 44610 44610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold587 SAMTools SNP 45352 45352 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 45780 45780 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold587 SAMTools SNP 46290 46290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold587 SAMTools SNP 46302 46302 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold587 SAMTools SNP 48936 48936 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 48972 48972 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold587 SAMTools SNP 49358 49358 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C64:67 scaffold587 SAMTools SNP 49385 49385 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C150:77 scaffold587 SAMTools SNP 49433 49433 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold587 SAMTools SNP 50505 50505 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 50508 50508 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 51012 51012 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold587 SAMTools SNP 51051 51051 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold587 SAMTools SNP 51099 51099 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold587 SAMTools SNP 51491 51491 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold587 SAMTools SNP 51499 51499 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold587 SAMTools SNP 51509 51509 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold587 SAMTools SNP 51549 51549 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 52168 52168 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 52855 52855 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold587 SAMTools SNP 53356 53356 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold587 SAMTools SNP 53608 53608 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 53628 53628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 53660 53660 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 54282 54282 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C45%2C0:87 scaffold587 SAMTools SNP 54354 54354 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.21%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold587 SAMTools SNP 54627 54627 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold587 SAMTools SNP 54774 54774 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 54937 54937 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold587 SAMTools SNP 55087 55087 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold587 SAMTools SNP 55093 55093 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.11%2C0.0033%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold587 SAMTools SNP 55108 55108 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 55682 55682 65.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold587 SAMTools SNP 55982 55982 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C140:99 scaffold587 SAMTools SNP 56003 56003 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C230:99 scaffold587 SAMTools SNP 56219 56219 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.1%2C0.00033%2C1%2C0.00083;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold587 SAMTools SNP 56483 56483 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold587 SAMTools SNP 56504 56504 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold587 SAMTools SNP 56573 56573 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold587 SAMTools SNP 56624 56624 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold587 SAMTools SNP 56627 56627 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold587 SAMTools SNP 57110 57110 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C25%3BMQ%3D50%3BFQ%3D181%3BPV4%3D2.5e-05%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C208:99 scaffold587 SAMTools SNP 57113 57113 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C6%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D2.5e-05%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C242:99 scaffold587 SAMTools SNP 57140 57140 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold587 SAMTools SNP 57224 57224 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 57242 57242 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 57412 57412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 57457 57457 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 57481 57481 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 57490 57490 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold587 SAMTools SNP 57785 57785 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 58049 58049 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C14%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold587 SAMTools SNP 58166 58166 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 58190 58190 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold587 SAMTools SNP 58604 58604 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 58638 58638 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C27%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.0061%2C2.9e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold587 SAMTools SNP 59025 59025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 59043 59043 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C21%2C41%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C3.1e-09%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 59368 59368 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 59512 59512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C69%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold587 SAMTools SNP 59533 59533 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold587 SAMTools SNP 60359 60359 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold587 SAMTools SNP 60398 60398 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 60467 60467 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C21%2C0:34 scaffold587 SAMTools SNP 60509 60509 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold587 SAMTools SNP 60584 60584 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold587 SAMTools SNP 60611 60611 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold587 SAMTools SNP 60958 60958 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 60962 60962 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold587 SAMTools SNP 61147 61147 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C39%2C0:75 scaffold587 SAMTools SNP 61195 61195 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C30%2C0:54 scaffold587 SAMTools SNP 61243 61243 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold587 SAMTools SNP 61249 61249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold587 SAMTools SNP 61679 61679 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 61757 61757 45.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold587 SAMTools SNP 61862 61862 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold587 SAMTools SNP 61883 61883 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C10%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold587 SAMTools SNP 61898 61898 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0059%2C0.085%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62110 62110 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62156 62156 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold587 SAMTools SNP 62159 62159 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold587 SAMTools SNP 62226 62226 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62466 62466 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62478 62478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.035%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62550 62550 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C35%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62557 62557 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C13%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold587 SAMTools SNP 62577 62577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C20%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold587 SAMTools SNP 62786 62786 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C9%2C21%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0054%2C1.3e-24%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold587 SAMTools SNP 64190 64190 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C112:60 scaffold587 SAMTools SNP 71276 71276 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 71315 71315 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 76523 76523 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 76524 76524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 76704 76704 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold587 SAMTools SNP 76893 76893 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold587 SAMTools SNP 76952 76952 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold587 SAMTools SNP 77169 77169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold587 SAMTools SNP 77407 77407 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold587 SAMTools SNP 77632 77632 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold587 SAMTools SNP 77656 77656 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 102428 102428 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D216%2C53%2C46%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.71%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold587 SAMTools SNP 102443 102443 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D193%2C78%2C41%2C13%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold587 SAMTools SNP 105406 105406 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 106209 106209 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D459%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C247%2C204%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 106335 106335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 106337 106337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold587 SAMTools SNP 108314 108314 152 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-79;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C70%2C244%2C0%2C235:99 scaffold587 SAMTools SNP 110288 110288 24.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold587 SAMTools SNP 111292 111292 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold587 SAMTools SNP 111393 111393 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C42%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold587 SAMTools SNP 112044 112044 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C36%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C218:99 scaffold587 SAMTools SNP 112067 112067 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold587 SAMTools SNP 112210 112210 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C81%2C0:99 scaffold587 SAMTools SNP 114233 114233 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold587 SAMTools SNP 120328 120328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold587 SAMTools SNP 125415 125415 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold587 SAMTools SNP 126952 126952 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold587 SAMTools SNP 163712 163712 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold588 SAMTools SNP 355 355 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0126%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold588 SAMTools SNP 388 388 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold588 SAMTools SNP 845 845 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold588 SAMTools SNP 7543 7543 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold588 SAMTools SNP 14327 14327 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold588 SAMTools SNP 14375 14375 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C155:99 scaffold588 SAMTools SNP 19031 19031 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold588 SAMTools SNP 19542 19542 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.33%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold588 SAMTools SNP 19772 19772 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold588 SAMTools SNP 19799 19799 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold588 SAMTools SNP 29994 29994 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold588 SAMTools SNP 34495 34495 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold588 SAMTools SNP 34549 34549 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold588 SAMTools SNP 34926 34926 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C39:42 scaffold588 SAMTools SNP 36075 36075 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C74:77 scaffold588 SAMTools SNP 36087 36087 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C32:35 scaffold588 SAMTools SNP 36579 36579 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold588 SAMTools SNP 36637 36637 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.017%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold588 SAMTools SNP 36643 36643 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold588 SAMTools SNP 39273 39273 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0034%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold588 SAMTools SNP 43132 43132 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold588 SAMTools SNP 47293 47293 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.54%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C192:99 scaffold588 SAMTools SNP 47376 47376 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C182:99 scaffold588 SAMTools SNP 53888 53888 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C0.19%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C113:99 scaffold588 SAMTools SNP 56683 56683 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold588 SAMTools SNP 56753 56753 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold588 SAMTools SNP 57245 57245 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold588 SAMTools SNP 57911 57911 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold588 SAMTools SNP 100019 100019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold588 SAMTools SNP 115941 115941 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold588 SAMTools SNP 157014 157014 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold588 SAMTools SNP 157076 157076 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C69%2C0:99 scaffold588 SAMTools SNP 157375 157375 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.0039%2C0.0082%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold588 SAMTools SNP 157393 157393 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 159955 159955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 166588 166588 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold588 SAMTools SNP 166610 166610 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.18%2C0.12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C181:99 scaffold588 SAMTools SNP 175075 175075 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold588 SAMTools SNP 179212 179212 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.65%2C4.8e-09%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold588 SAMTools SNP 180349 180349 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C62%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 181135 181135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C102%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 182172 182172 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 182678 182678 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold588 SAMTools SNP 193156 193156 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold588 SAMTools SNP 194050 194050 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold588 SAMTools SNP 194643 194643 3.41 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C16%2C10%2C31%2C0%2C28:4 scaffold588 SAMTools SNP 195226 195226 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold588 SAMTools SNP 195310 195310 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold588 SAMTools SNP 195426 195426 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C72%2C0:99 scaffold588 SAMTools SNP 195488 195488 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C4%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C126%2C0:99 scaffold588 SAMTools SNP 195638 195638 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C21%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.16%2C6.2e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold588 SAMTools SNP 195685 195685 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C39%2C2%2C22%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.62%2C1.1e-52%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold588 SAMTools SNP 195967 195967 39.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold588 SAMTools SNP 229136 229136 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold588 SAMTools SNP 236978 236978 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold588 SAMTools SNP 237431 237431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold588 SAMTools SNP 237464 237464 48 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C210%2C174%2C249%2C0%2C228:69 scaffold588 SAMTools SNP 237467 237467 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C232:99 scaffold588 SAMTools SNP 239420 239420 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold588 SAMTools SNP 239439 239439 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold588 SAMTools SNP 239513 239513 63.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C18%2C0:33 scaffold588 SAMTools SNP 239570 239570 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold588 SAMTools SNP 239882 239882 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C19%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.7%2C6.7e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold588 SAMTools SNP 240154 240154 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C69%2C0:99 scaffold588 SAMTools SNP 240454 240454 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold588 SAMTools SNP 240467 240467 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold588 SAMTools SNP 241119 241119 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 241215 241215 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 241470 241470 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold588 SAMTools SNP 245740 245740 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold588 SAMTools SNP 246844 246844 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold588 SAMTools SNP 246907 246907 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C85:31 scaffold588 SAMTools SNP 247152 247152 45.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold588 SAMTools SNP 258966 258966 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold588 SAMTools SNP 259000 259000 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold588 SAMTools SNP 263883 263883 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 263929 263929 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 265562 265562 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C232:99 scaffold588 SAMTools SNP 265594 265594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C4%2C13%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold588 SAMTools SNP 267543 267543 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 267706 267706 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.28%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold588 SAMTools SNP 267728 267728 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold588 SAMTools SNP 267731 267731 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold588 SAMTools SNP 267749 267749 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 267767 267767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold588 SAMTools SNP 267809 267809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C96%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.57%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold588 SAMTools SNP 268138 268138 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C1%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.45%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold588 SAMTools SNP 268141 268141 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C1%2C10%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.0036%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold588 SAMTools SNP 268165 268165 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C60%2C3%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 273086 273086 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold588 SAMTools SNP 273095 273095 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.027%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C132:99 scaffold588 SAMTools SNP 273636 273636 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C14%2C32%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold588 SAMTools SNP 274250 274250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C98%2C5%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 274329 274329 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold588 SAMTools SNP 276286 276286 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold588 SAMTools SNP 276679 276679 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold588 SAMTools SNP 276775 276775 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold588 SAMTools SNP 277817 277817 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C0.31%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C219:99 scaffold588 SAMTools SNP 277870 277870 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C15%2C0:27 scaffold588 SAMTools SNP 285847 285847 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C40%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.001%2C0.25%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold588 SAMTools SNP 285857 285857 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C83%2C0%2C27%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold588 SAMTools SNP 285884 285884 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C38%2C23%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00017%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 286222 286222 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C21%2C74%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.071%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 286244 286244 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 286267 286267 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C42%2C82%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1.2e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 287217 287217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C186%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 287250 287250 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 304302 304302 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold588 SAMTools SNP 362385 362385 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold588 SAMTools SNP 362658 362658 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold588 SAMTools SNP 362682 362682 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.27%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C139:99 scaffold588 SAMTools SNP 362712 362712 180 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C51%2C0%2C196%2C21%2C193:99 scaffold588 SAMTools SNP 362721 362721 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C54%2C0:99 scaffold588 SAMTools SNP 389167 389167 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold588 SAMTools SNP 389552 389552 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 392548 392548 20.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold588 SAMTools SNP 394556 394556 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold588 SAMTools SNP 394793 394793 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 402582 402582 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 404771 404771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 404790 404790 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.17%2C0.33%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold588 SAMTools SNP 405280 405280 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C2%3BMQ%3D49%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold588 SAMTools SNP 428499 428499 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 429327 429327 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold588 SAMTools SNP 429726 429726 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C219:99 scaffold588 SAMTools SNP 430185 430185 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold588 SAMTools SNP 430205 430205 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.027%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold588 SAMTools SNP 431060 431060 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C10%2C0%3BMQ%3D46%3BFQ%3D149%3BPV4%3D0.0027%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold588 SAMTools SNP 431102 431102 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C17%2C12%2C0%3BMQ%3D47%3BFQ%3D70%3BPV4%3D0.061%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold588 SAMTools SNP 431426 431426 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C144%2C33%2C50%3BMQ%3D35%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 431788 431788 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C67%2C5%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 434043 434043 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D570%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D284%2C97%2C167%2C22%3BMQ%3D40%3BFQ%3D184%3BPV4%3D0.00011%2C0.31%2C7.3e-63%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold588 SAMTools SNP 434951 434951 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3240%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C2126%2C1026%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C0.17%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold588 SAMTools SNP 435013 435013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3145%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D522%2C1368%2C403%2C847%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0058%2C0.25%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 437799 437799 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 438249 438249 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 438369 438369 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D21%2C0%2C15%2C0%3BMQ%3D22%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C10%2C0:17 scaffold588 SAMTools SNP 439010 439010 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C23%3BMQ%3D43%3BFQ%3D28%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C55:58 scaffold588 SAMTools SNP 439104 439104 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 439127 439127 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D41%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C207:85 scaffold588 SAMTools SNP 439298 439298 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C0%2C195%2C1%3BMQ%3D37%3BFQ%3D107%3BPV4%3D1%2C3.1e-05%2C0.025%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C134:99 scaffold588 SAMTools SNP 439442 439442 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1012%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C692%2C15%2C262%3BMQ%3D47%3BFQ%3D141%3BPV4%3D0.62%2C0.0012%2C0.42%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold588 SAMTools SNP 439650 439650 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C5%3BMQ%3D49%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C236:99 scaffold588 SAMTools SNP 442004 442004 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C69%2C0:99 scaffold588 SAMTools SNP 442037 442037 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C54%2C0:99 scaffold588 SAMTools SNP 443828 443828 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold588 SAMTools SNP 443858 443858 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 443863 443863 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 443873 443873 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold588 SAMTools SNP 445582 445582 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold588 SAMTools SNP 445588 445588 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C18:21 scaffold588 SAMTools SNP 445630 445630 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold588 SAMTools SNP 446017 446017 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.007%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C254:99 scaffold588 SAMTools SNP 446056 446056 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.095%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C217:99 scaffold588 SAMTools SNP 446318 446318 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold588 SAMTools SNP 446330 446330 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold588 SAMTools SNP 446359 446359 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C36:39 scaffold588 SAMTools SNP 446453 446453 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold588 SAMTools SNP 446775 446775 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold588 SAMTools SNP 446908 446908 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold588 SAMTools SNP 447317 447317 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold588 SAMTools SNP 447329 447329 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 447356 447356 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 447563 447563 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 447721 447721 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold588 SAMTools SNP 447931 447931 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold588 SAMTools SNP 447945 447945 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold588 SAMTools SNP 447963 447963 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold588 SAMTools SNP 448458 448458 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.49%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold588 SAMTools SNP 448557 448557 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold588 SAMTools SNP 449960 449960 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold588 SAMTools SNP 451542 451542 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold588 SAMTools SNP 452107 452107 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold588 SAMTools SNP 452265 452265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C10:13 scaffold588 SAMTools SNP 452680 452680 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold588 SAMTools SNP 452710 452710 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold588 SAMTools SNP 453097 453097 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold588 SAMTools SNP 453345 453345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold588 SAMTools SNP 453375 453375 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.48%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 454426 454426 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C18%2C0:33 scaffold588 SAMTools SNP 454576 454576 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 454847 454847 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold588 SAMTools SNP 455112 455112 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold588 SAMTools SNP 458335 458335 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D43%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold588 SAMTools SNP 458349 458349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D43%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold588 SAMTools SNP 458830 458830 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C175:69 scaffold588 SAMTools SNP 459191 459191 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold588 SAMTools SNP 459464 459464 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C0%3BMQ%3D31%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C154:49 scaffold59 SAMTools SNP 32 32 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold59 SAMTools SNP 42 42 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold59 SAMTools SNP 112 112 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold59 SAMTools SNP 434 434 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold59 SAMTools SNP 472 472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold59 SAMTools SNP 2611 2611 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C64%2C15%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold59 SAMTools SNP 2620 2620 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D508%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C230%2C0%2C146%3BMQ%3D50%3BFQ%3D145%3BPV4%3D8.9e-24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold59 SAMTools SNP 2632 2632 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D641%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C402%2C0%2C190%3BMQ%3D50%3BFQ%3D123%3BPV4%3D2.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold59 SAMTools SNP 2655 2655 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D720%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C200%2C44%2C476%3BMQ%3D50%3BFQ%3D77%3BPV4%3D6.6e-07%2C6.2e-05%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold59 SAMTools SNP 3746 3746 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C13%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold59 SAMTools SNP 3777 3777 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold59 SAMTools SNP 4262 4262 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C19%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold59 SAMTools SNP 4289 4289 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold59 SAMTools SNP 4572 4572 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold59 SAMTools SNP 4581 4581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold59 SAMTools SNP 4691 4691 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C87%2C20%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold59 SAMTools SNP 5121 5121 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C22%2C27%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold59 SAMTools SNP 5181 5181 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C22%2C177%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-05%2C1%2C1%2C8.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold59 SAMTools SNP 5214 5214 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D485%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D263%2C44%2C36%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold59 SAMTools SNP 5218 5218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C284%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 6196 6196 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1402%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D317%2C328%2C80%2C65%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.2%2C3.7e-07%2C1%2C3.9e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold59 SAMTools SNP 6952 6952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 6956 6956 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 7117 7117 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C1%2C15%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.00085%2C0.39%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold59 SAMTools SNP 7135 7135 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 7443 7443 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 7476 7476 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C87%2C17%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 7623 7623 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C46%2C136%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold59 SAMTools SNP 7655 7655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C230%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold59 SAMTools SNP 7861 7861 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D540%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D243%2C223%2C46%2C22%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold59 SAMTools SNP 7965 7965 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D789%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C46%2C170%2C232%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-10%2C1%2C1%2C5.6e-135;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold59 SAMTools SNP 8296 8296 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D19%3BPV4%3D0.11%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C68:49 scaffold59 SAMTools SNP 8495 8495 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D374%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C8%2C70%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold59 SAMTools SNP 9245 9245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C258%2C33%2C293%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C8.5e-253%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold59 SAMTools SNP 10938 10938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold59 SAMTools SNP 13642 13642 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold59 SAMTools SNP 16648 16648 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold59 SAMTools SNP 16826 16826 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.49%2C7.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C127:99 scaffold59 SAMTools SNP 16880 16880 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.46%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C196:92 scaffold59 SAMTools SNP 17192 17192 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold59 SAMTools SNP 17490 17490 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C9%2C0:16 scaffold59 SAMTools SNP 18126 18126 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold59 SAMTools SNP 18851 18851 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold59 SAMTools SNP 23616 23616 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold59 SAMTools SNP 23619 23619 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold59 SAMTools SNP 23636 23636 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold59 SAMTools SNP 23800 23800 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D39%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C79:41 scaffold59 SAMTools SNP 24047 24047 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D42%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C144:34 scaffold59 SAMTools SNP 24059 24059 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.17%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold59 SAMTools SNP 24235 24235 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold59 SAMTools SNP 24313 24313 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.61%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold59 SAMTools SNP 24501 24501 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold59 SAMTools SNP 24617 24617 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold59 SAMTools SNP 24650 24650 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold59 SAMTools SNP 133678 133678 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C23%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.7%2C6.7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold59 SAMTools SNP 133783 133783 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C16%2C23%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.51%2C7.6e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold59 SAMTools SNP 134515 134515 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C60%2C0:99 scaffold59 SAMTools SNP 143396 143396 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold59 SAMTools SNP 146816 146816 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D35.9%3BPV4%3D0.33%2C0.013%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C80:66 scaffold59 SAMTools SNP 226944 226944 7.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold59 SAMTools SNP 227259 227259 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C42%2C0:81 scaffold59 SAMTools SNP 247660 247660 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 12613 12613 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 12664 12664 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 28183 28183 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold591 SAMTools SNP 91618 91618 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.019%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold591 SAMTools SNP 91937 91937 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.3%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold591 SAMTools SNP 95446 95446 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold591 SAMTools SNP 95727 95727 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C127:79 scaffold591 SAMTools SNP 109843 109843 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C3%2C35%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.44%2C6.7e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold591 SAMTools SNP 110020 110020 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold591 SAMTools SNP 114414 114414 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold591 SAMTools SNP 114431 114431 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold591 SAMTools SNP 114569 114569 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold591 SAMTools SNP 114964 114964 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold591 SAMTools SNP 118226 118226 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.2%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold591 SAMTools SNP 120420 120420 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold591 SAMTools SNP 127296 127296 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold591 SAMTools SNP 189314 189314 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D45%3BFQ%3D44%3BPV4%3D0.1%2C4.2e-09%2C0.39%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold591 SAMTools SNP 206190 206190 19.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D47%3BFQ%3D22%3BPV4%3D1%2C0.00064%2C0.33%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C172:52 scaffold591 SAMTools SNP 218806 218806 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold591 SAMTools SNP 223993 223993 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold591 SAMTools SNP 257922 257922 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 259540 259540 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 265264 265264 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 275045 275045 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 275245 275245 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 275277 275277 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 280424 280424 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 280467 280467 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 280549 280549 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 282844 282844 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold591 SAMTools SNP 346232 346232 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold591 SAMTools SNP 362293 362293 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C7%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C5.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C234:99 scaffold591 SAMTools SNP 390197 390197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C214%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 390599 390599 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C58%2C115%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 394129 394129 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C49%2C32%2C24%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.51%2C6e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold591 SAMTools SNP 395849 395849 32.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold591 SAMTools SNP 396018 396018 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 397205 397205 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.45%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 397283 397283 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C11%2C42%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 398405 398405 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C81%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold591 SAMTools SNP 398833 398833 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C17%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C232:99 scaffold591 SAMTools SNP 398881 398881 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 401879 401879 37.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold591 SAMTools SNP 418722 418722 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 418913 418913 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 419888 419888 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 420227 420227 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold591 SAMTools SNP 420546 420546 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold591 SAMTools SNP 422579 422579 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C18%2C0:33 scaffold591 SAMTools SNP 422884 422884 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D182%3BPV4%3D3.4e-05%2C0.035%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold591 SAMTools SNP 422902 422902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold591 SAMTools SNP 424743 424743 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C20%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C231:99 scaffold591 SAMTools SNP 424761 424761 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold591 SAMTools SNP 424812 424812 221 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C50%2C0%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold591 SAMTools SNP 425097 425097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 425275 425275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C9%2C14%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.06%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold591 SAMTools SNP 425342 425342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold591 SAMTools SNP 425502 425502 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C4%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.19%2C0.24%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold591 SAMTools SNP 425530 425530 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.55%2C0.0012%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold591 SAMTools SNP 425560 425560 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.041%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold591 SAMTools SNP 425747 425747 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 425782 425782 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold591 SAMTools SNP 425784 425784 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold591 SAMTools SNP 425795 425795 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.015%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold591 SAMTools SNP 425825 425825 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C18%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold591 SAMTools SNP 425864 425864 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold591 SAMTools SNP 425918 425918 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold591 SAMTools SNP 426158 426158 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C28%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold591 SAMTools SNP 426219 426219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 426390 426390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 427034 427034 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold591 SAMTools SNP 427040 427040 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C24%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C44:47 scaffold591 SAMTools SNP 427300 427300 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold591 SAMTools SNP 427330 427330 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold591 SAMTools SNP 429053 429053 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.02%2C0.068%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C240:99 scaffold591 SAMTools SNP 429065 429065 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.065%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C239:99 scaffold591 SAMTools SNP 429122 429122 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.6%2C1%2C1%2C7.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold591 SAMTools SNP 429130 429130 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.59%2C0.44%2C1%2C7.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold591 SAMTools SNP 429369 429369 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold591 SAMTools SNP 429375 429375 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.11%2C0.18%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold591 SAMTools SNP 429403 429403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold591 SAMTools SNP 429408 429408 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold591 SAMTools SNP 432069 432069 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold591 SAMTools SNP 432131 432131 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.038%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold591 SAMTools SNP 432401 432401 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold591 SAMTools SNP 434312 434312 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold591 SAMTools SNP 434364 434364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C61%2C0:99 scaffold591 SAMTools SNP 434732 434732 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C22%2C23%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.001%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold591 SAMTools SNP 436023 436023 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C44%2C18%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1e-06%2C2.4e-05%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold591 SAMTools SNP 436314 436314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 436369 436369 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 436410 436410 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 438067 438067 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.029%2C0.00097%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold591 SAMTools SNP 451489 451489 116 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C2%2C33%2C0%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D0.0048%2C0.00075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C28:31 scaffold591 SAMTools SNP 451520 451520 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.046%2C0.00034%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold591 SAMTools SNP 487060 487060 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold591 SAMTools SNP 495015 495015 43.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold591 SAMTools SNP 526708 526708 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold591 SAMTools SNP 616114 616114 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold591 SAMTools SNP 618543 618543 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 626422 626422 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 635495 635495 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 638909 638909 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold591 SAMTools SNP 638977 638977 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold591 SAMTools SNP 641128 641128 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold591 SAMTools SNP 641400 641400 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C9%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold591 SAMTools SNP 641442 641442 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold591 SAMTools SNP 641455 641455 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 641475 641475 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.074%2C0.35%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold591 SAMTools SNP 641478 641478 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.22%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold591 SAMTools SNP 641888 641888 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold591 SAMTools SNP 641901 641901 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 643025 643025 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 643081 643081 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 643105 643105 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold591 SAMTools SNP 643879 643879 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 645574 645574 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold591 SAMTools SNP 646270 646270 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold591 SAMTools SNP 646295 646295 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 646780 646780 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.0035%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C174:64 scaffold591 SAMTools SNP 647168 647168 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold591 SAMTools SNP 647180 647180 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold591 SAMTools SNP 647512 647512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold591 SAMTools SNP 647536 647536 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold591 SAMTools SNP 647647 647647 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 648281 648281 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold591 SAMTools SNP 648353 648353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold591 SAMTools SNP 648751 648751 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 648778 648778 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold591 SAMTools SNP 648958 648958 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 648994 648994 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 649334 649334 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 649373 649373 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 649595 649595 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 649622 649622 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold591 SAMTools SNP 653429 653429 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 653441 653441 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 654270 654270 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 654326 654326 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold591 SAMTools SNP 654330 654330 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold591 SAMTools SNP 654420 654420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 656449 656449 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 656684 656684 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 657458 657458 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 657521 657521 36.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold591 SAMTools SNP 658005 658005 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 658239 658239 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 658320 658320 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold591 SAMTools SNP 659081 659081 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold591 SAMTools SNP 659380 659380 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C155:76 scaffold591 SAMTools SNP 659399 659399 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 659417 659417 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 659506 659506 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold591 SAMTools SNP 659740 659740 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C197:82 scaffold591 SAMTools SNP 659812 659812 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 660189 660189 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 660718 660718 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold591 SAMTools SNP 661203 661203 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 661227 661227 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 662096 662096 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C39%2C0:75 scaffold591 SAMTools SNP 662234 662234 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold591 SAMTools SNP 663088 663088 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.61%2C1.2e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold591 SAMTools SNP 663649 663649 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold591 SAMTools SNP 663971 663971 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 665664 665664 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold591 SAMTools SNP 666163 666163 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold591 SAMTools SNP 666644 666644 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold591 SAMTools SNP 666686 666686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold591 SAMTools SNP 667190 667190 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold591 SAMTools SNP 667226 667226 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 667800 667800 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold591 SAMTools SNP 668209 668209 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold591 SAMTools SNP 668232 668232 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold591 SAMTools SNP 668407 668407 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold591 SAMTools SNP 668413 668413 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold591 SAMTools SNP 668711 668711 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.068%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 668738 668738 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold591 SAMTools SNP 669223 669223 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold591 SAMTools SNP 669668 669668 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold591 SAMTools SNP 669692 669692 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold591 SAMTools SNP 669827 669827 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold591 SAMTools SNP 670564 670564 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.077%2C0.00028%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C251:99 scaffold591 SAMTools SNP 670845 670845 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 670941 670941 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C11%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold591 SAMTools SNP 671306 671306 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 671654 671654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold591 SAMTools SNP 671738 671738 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold591 SAMTools SNP 672146 672146 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold591 SAMTools SNP 672164 672164 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold591 SAMTools SNP 672224 672224 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold591 SAMTools SNP 672561 672561 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C0.11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold591 SAMTools SNP 672606 672606 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 672666 672666 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold591 SAMTools SNP 672681 672681 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold591 SAMTools SNP 673404 673404 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold591 SAMTools SNP 674351 674351 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 674372 674372 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 674910 674910 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold591 SAMTools SNP 674937 674937 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C38:41 scaffold591 SAMTools SNP 675378 675378 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold591 SAMTools SNP 675381 675381 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold591 SAMTools SNP 675411 675411 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold591 SAMTools SNP 675922 675922 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 676166 676166 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold591 SAMTools SNP 676575 676575 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 677191 677191 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold591 SAMTools SNP 677757 677757 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.026%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold591 SAMTools SNP 677790 677790 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold591 SAMTools SNP 678035 678035 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 678069 678069 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 678113 678113 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold591 SAMTools SNP 678436 678436 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 678448 678448 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 678460 678460 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold591 SAMTools SNP 678520 678520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C13%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 678942 678942 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0178%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold591 SAMTools SNP 679444 679444 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold591 SAMTools SNP 679495 679495 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold591 SAMTools SNP 679758 679758 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold591 SAMTools SNP 679773 679773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 680194 680194 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.19%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold591 SAMTools SNP 682492 682492 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.11%2C0.011%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold591 SAMTools SNP 682511 682511 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.54%2C7e-05%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold591 SAMTools SNP 682515 682515 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.011%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C247:99 scaffold591 SAMTools SNP 683098 683098 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.00081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold591 SAMTools SNP 683119 683119 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold591 SAMTools SNP 683134 683134 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold591 SAMTools SNP 683569 683569 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.15%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold591 SAMTools SNP 683872 683872 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 684138 684138 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C8.2e-06%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold591 SAMTools SNP 684842 684842 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C9%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold591 SAMTools SNP 684925 684925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 684934 684934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.3%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 686367 686367 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C12%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.004%2C1.5e-15%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold591 SAMTools SNP 686414 686414 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.062%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold591 SAMTools SNP 686558 686558 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C69%2C0:99 scaffold591 SAMTools SNP 687298 687298 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold591 SAMTools SNP 687452 687452 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.031%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C145:99 scaffold591 SAMTools SNP 687467 687467 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C245:99 scaffold591 SAMTools SNP 687518 687518 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C236:99 scaffold591 SAMTools SNP 687874 687874 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0095%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold591 SAMTools SNP 688519 688519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold591 SAMTools SNP 689514 689514 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold591 SAMTools SNP 690064 690064 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold591 SAMTools SNP 690432 690432 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 690941 690941 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 691088 691088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 691365 691365 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 691377 691377 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 691596 691596 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold591 SAMTools SNP 691731 691731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C4.8e-06%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold591 SAMTools SNP 692107 692107 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.69%2C8.3e-21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold591 SAMTools SNP 692179 692179 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 692646 692646 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold591 SAMTools SNP 692653 692653 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold591 SAMTools SNP 693094 693094 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.31%2C0.39%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold591 SAMTools SNP 693723 693723 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold591 SAMTools SNP 693747 693747 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold591 SAMTools SNP 693825 693825 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold591 SAMTools SNP 694155 694155 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C1%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C212:83 scaffold591 SAMTools SNP 694377 694377 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C5%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00037%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold591 SAMTools SNP 694393 694393 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.26%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold591 SAMTools SNP 694593 694593 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold591 SAMTools SNP 694674 694674 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold591 SAMTools SNP 695172 695172 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold591 SAMTools SNP 695199 695199 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 695241 695241 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 695584 695584 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C250:99 scaffold591 SAMTools SNP 695954 695954 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 696201 696201 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 696543 696543 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 696715 696715 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold591 SAMTools SNP 696886 696886 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold591 SAMTools SNP 697650 697650 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold591 SAMTools SNP 697671 697671 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold591 SAMTools SNP 699180 699180 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C62%2C11%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D3.8e-08%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold591 SAMTools SNP 701906 701906 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold591 SAMTools SNP 701908 701908 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold591 SAMTools SNP 701975 701975 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D38.6%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C76:69 scaffold591 SAMTools SNP 702031 702031 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 702035 702035 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 702376 702376 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold591 SAMTools SNP 702381 702381 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C15%2C0:27 scaffold591 SAMTools SNP 702412 702412 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 702688 702688 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 702851 702851 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C48%2C0:93 scaffold591 SAMTools SNP 702899 702899 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C90%2C0:99 scaffold591 SAMTools SNP 702976 702976 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold591 SAMTools SNP 704567 704567 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 704656 704656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C31%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold591 SAMTools SNP 706240 706240 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold591 SAMTools SNP 706775 706775 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold591 SAMTools SNP 706816 706816 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold591 SAMTools SNP 706865 706865 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold591 SAMTools SNP 707453 707453 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 707506 707506 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold591 SAMTools SNP 708087 708087 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold591 SAMTools SNP 708167 708167 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C34%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C2.1e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold591 SAMTools SNP 708202 708202 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C6%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D0.41%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C15%2C0:27 scaffold591 SAMTools SNP 708234 708234 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold591 SAMTools SNP 709438 709438 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 709641 709641 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 710308 710308 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C197%2C112%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 710336 710336 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C61%2C47%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.2%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 710738 710738 17.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold591 SAMTools SNP 710739 710739 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 711942 711942 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold591 SAMTools SNP 714862 714862 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 715004 715004 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold591 SAMTools SNP 715187 715187 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold591 SAMTools SNP 715277 715277 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold591 SAMTools SNP 715985 715985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C27%2C29%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C3.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 716027 716027 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.3%2C0.3%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold591 SAMTools SNP 716147 716147 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C246:99 scaffold591 SAMTools SNP 716587 716587 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold591 SAMTools SNP 716680 716680 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold591 SAMTools SNP 717740 717740 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold591 SAMTools SNP 717745 717745 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.36%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold591 SAMTools SNP 718097 718097 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.39%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold591 SAMTools SNP 718127 718127 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.042%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 718305 718305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold591 SAMTools SNP 718407 718407 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold591 SAMTools SNP 718697 718697 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold591 SAMTools SNP 719954 719954 11.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold591 SAMTools SNP 720981 720981 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold591 SAMTools SNP 721191 721191 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.24%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold591 SAMTools SNP 721688 721688 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.096%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold591 SAMTools SNP 722510 722510 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 722612 722612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold591 SAMTools SNP 723119 723119 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold591 SAMTools SNP 723221 723221 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold591 SAMTools SNP 723235 723235 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 728434 728434 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold591 SAMTools SNP 731415 731415 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 732003 732003 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold591 SAMTools SNP 732006 732006 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.23%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold591 SAMTools SNP 733593 733593 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold591 SAMTools SNP 737071 737071 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold591 SAMTools SNP 737096 737096 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold591 SAMTools SNP 738471 738471 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 740229 740229 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 740256 740256 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 741772 741772 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 742335 742335 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold591 SAMTools SNP 743089 743089 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C25%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold591 SAMTools SNP 743118 743118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold591 SAMTools SNP 743284 743284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold591 SAMTools SNP 745738 745738 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 749845 749845 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 750129 750129 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 750504 750504 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 751752 751752 11.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold591 SAMTools SNP 754656 754656 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold591 SAMTools SNP 754657 754657 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold591 SAMTools SNP 755085 755085 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.017%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold591 SAMTools SNP 756555 756555 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 756963 756963 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold591 SAMTools SNP 757137 757137 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold591 SAMTools SNP 757411 757411 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold591 SAMTools SNP 757546 757546 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold591 SAMTools SNP 759364 759364 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0069%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold591 SAMTools SNP 759383 759383 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold591 SAMTools SNP 759826 759826 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C12%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.071%2C0.21%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C95:98 scaffold591 SAMTools SNP 759854 759854 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.08%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold591 SAMTools SNP 759863 759863 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold591 SAMTools SNP 760106 760106 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold591 SAMTools SNP 760130 760130 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold591 SAMTools SNP 764072 764072 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold591 SAMTools SNP 764545 764545 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 764722 764722 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold591 SAMTools SNP 764782 764782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold591 SAMTools SNP 764803 764803 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold591 SAMTools SNP 768372 768372 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold591 SAMTools SNP 768985 768985 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.31%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold591 SAMTools SNP 768991 768991 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 773436 773436 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 773892 773892 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold591 SAMTools SNP 773928 773928 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold591 SAMTools SNP 774222 774222 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold591 SAMTools SNP 774335 774335 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold591 SAMTools SNP 774643 774643 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold591 SAMTools SNP 774646 774646 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold591 SAMTools SNP 774658 774658 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold591 SAMTools SNP 775066 775066 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold591 SAMTools SNP 775132 775132 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 775401 775401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 775970 775970 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 785080 785080 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C217:99 scaffold591 SAMTools SNP 785086 785086 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 785158 785158 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold591 SAMTools SNP 785622 785622 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold591 SAMTools SNP 785715 785715 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold591 SAMTools SNP 789371 789371 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.43%2C0.13%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C163:98 scaffold591 SAMTools SNP 789700 789700 166 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.4%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold591 SAMTools SNP 789739 789739 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold591 SAMTools SNP 789779 789779 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.11%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold591 SAMTools SNP 790715 790715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold591 SAMTools SNP 792489 792489 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.28%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C230:99 scaffold591 SAMTools SNP 792516 792516 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.57%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C216:99 scaffold591 SAMTools SNP 792564 792564 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.35%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold591 SAMTools SNP 797489 797489 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 821973 821973 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 822000 822000 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold591 SAMTools SNP 822046 822046 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.21%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C71:52 scaffold591 SAMTools SNP 824424 824424 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 824465 824465 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 824509 824509 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold591 SAMTools SNP 824620 824620 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 824993 824993 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 825022 825022 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold591 SAMTools SNP 827657 827657 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C75%2C0:97 scaffold591 SAMTools SNP 828637 828637 32.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold591 SAMTools SNP 828730 828730 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C14%2C7%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.53%2C1.9e-15%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold591 SAMTools SNP 828814 828814 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 829244 829244 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold591 SAMTools SNP 833573 833573 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 837179 837179 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C18%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C217%2C0:99 scaffold591 SAMTools SNP 837212 837212 113 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C87%2C27%2C57%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C7.1e-131%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold591 SAMTools SNP 842110 842110 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold591 SAMTools SNP 842738 842738 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.65%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold591 SAMTools SNP 843097 843097 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.022%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold591 SAMTools SNP 843416 843416 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold591 SAMTools SNP 843428 843428 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold591 SAMTools SNP 852947 852947 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold591 SAMTools SNP 858161 858161 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 858971 858971 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C225:99 scaffold591 SAMTools SNP 859046 859046 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold591 SAMTools SNP 859073 859073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.54%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold591 SAMTools SNP 864141 864141 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.56%2C0.38%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold591 SAMTools SNP 864175 864175 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold591 SAMTools SNP 864525 864525 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.55%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold591 SAMTools SNP 864549 864549 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold591 SAMTools SNP 864597 864597 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 864678 864678 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold591 SAMTools SNP 865867 865867 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold591 SAMTools SNP 865904 865904 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold591 SAMTools SNP 874912 874912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold591 SAMTools SNP 874921 874921 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.59%2C0.48%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold591 SAMTools SNP 874972 874972 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.011%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold591 SAMTools SNP 876021 876021 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold591 SAMTools SNP 876033 876033 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D2.3e-05%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold591 SAMTools SNP 876045 876045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C14%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.11%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold591 SAMTools SNP 885636 885636 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 885653 885653 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 886286 886286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold591 SAMTools SNP 886292 886292 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold591 SAMTools SNP 886361 886361 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C17%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C147:99 scaffold591 SAMTools SNP 890070 890070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold591 SAMTools SNP 892764 892764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold591 SAMTools SNP 897352 897352 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C202:99 scaffold591 SAMTools SNP 897361 897361 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold591 SAMTools SNP 897397 897397 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.4%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C77:50 scaffold591 SAMTools SNP 897415 897415 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.38%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold591 SAMTools SNP 897436 897436 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold591 SAMTools SNP 897445 897445 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold591 SAMTools SNP 897797 897797 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0214%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.53%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold591 SAMTools SNP 898035 898035 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C13%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.06%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold591 SAMTools SNP 898050 898050 221 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C14%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.065%2C0.085%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold591 SAMTools SNP 898074 898074 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 898532 898532 208 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold591 SAMTools SNP 898620 898620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold591 SAMTools SNP 898959 898959 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 898971 898971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 899040 899040 56.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold591 SAMTools SNP 899112 899112 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.26%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold591 SAMTools SNP 899528 899528 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold591 SAMTools SNP 899534 899534 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold591 SAMTools SNP 899542 899542 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C0%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.33%2C0.011%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold591 SAMTools SNP 899564 899564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 900151 900151 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.51%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold591 SAMTools SNP 900189 900189 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00068%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C223:34 scaffold591 SAMTools SNP 901040 901040 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 901074 901074 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 901763 901763 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 901769 901769 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold591 SAMTools SNP 902181 902181 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.15%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold591 SAMTools SNP 902601 902601 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.043%2C1%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold591 SAMTools SNP 902611 902611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.51%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold591 SAMTools SNP 902635 902635 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold591 SAMTools SNP 904279 904279 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold591 SAMTools SNP 905332 905332 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.15%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold591 SAMTools SNP 906037 906037 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.077%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C11:14 scaffold591 SAMTools SNP 906067 906067 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 906289 906289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C28%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.44%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold591 SAMTools SNP 906965 906965 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold591 SAMTools SNP 907062 907062 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 907452 907452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold591 SAMTools SNP 907479 907479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold591 SAMTools SNP 907899 907899 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.091%2C0.3%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold591 SAMTools SNP 907977 907977 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.53%2C0.043%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold591 SAMTools SNP 908049 908049 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold591 SAMTools SNP 910262 910262 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold591 SAMTools SNP 910541 910541 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold591 SAMTools SNP 913700 913700 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C126:53 scaffold591 SAMTools SNP 923916 923916 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.00047%2C0.21%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C80:40 scaffold591 SAMTools SNP 924209 924209 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold591 SAMTools SNP 927554 927554 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.54%2C0.0076%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold591 SAMTools SNP 928319 928319 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold591 SAMTools SNP 928761 928761 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold591 SAMTools SNP 928914 928914 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 928953 928953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 929536 929536 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 930353 930353 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold591 SAMTools SNP 931383 931383 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 932337 932337 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold591 SAMTools SNP 932761 932761 30.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold591 SAMTools SNP 932772 932772 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 937770 937770 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold591 SAMTools SNP 938502 938502 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.021%2C4.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C201:59 scaffold591 SAMTools SNP 938578 938578 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C24%2C0:45 scaffold591 SAMTools SNP 938812 938812 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold591 SAMTools SNP 938813 938813 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 939225 939225 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 939258 939258 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold591 SAMTools SNP 939336 939336 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold591 SAMTools SNP 940050 940050 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold591 SAMTools SNP 945610 945610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7987%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C812%2C13%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C9.4e-96%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 945822 945822 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7987%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D530%2C344%2C1239%2C5840%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D2e-152%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold591 SAMTools SNP 945855 945855 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4066%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C428%2C80%2C3090%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1.6e-154%2C1%2C1%2C7.6e-63;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold591 SAMTools SNP 945890 945890 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1703%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D282%2C686%2C4%2C715%3BMQ%3D50%3BFQ%3D185%3BPV4%3D2.1e-70%2C2e-137%2C1%2C9.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold591 SAMTools SNP 946184 946184 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7954%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D943%2C4168%2C378%2C2309%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.3e-07%2C0.0091%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 946488 946488 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2431%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C723%2C28%2C449%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-21%2C1%2C1%2C1.7e-55;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 946696 946696 30.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold591 SAMTools SNP 960683 960683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 960901 960901 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 964908 964908 55.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold591 SAMTools SNP 964920 964920 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0027%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C219:31 scaffold591 SAMTools SNP 965075 965075 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C11%2C15%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.27%2C1.5e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold591 SAMTools SNP 965547 965547 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.0023%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C127:64 scaffold591 SAMTools SNP 965899 965899 27.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold591 SAMTools SNP 966279 966279 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D5.28%3BPV4%3D1%2C9.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C31:34 scaffold591 SAMTools SNP 966618 966618 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C21:24 scaffold591 SAMTools SNP 966678 966678 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C3.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 966789 966789 111 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C51%2C0:99 scaffold591 SAMTools SNP 967266 967266 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C16%2C27%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.029%2C5.4e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold591 SAMTools SNP 967458 967458 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.52%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C140:39 scaffold591 SAMTools SNP 967536 967536 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.49%2C5.5e-22%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C188:61 scaffold591 SAMTools SNP 967575 967575 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.016%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C223:89 scaffold591 SAMTools SNP 967728 967728 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.36%2C3.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold591 SAMTools SNP 967791 967791 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C16%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.71%2C2.8e-37%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold591 SAMTools SNP 967878 967878 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C1%2C13%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.52%2C1.9e-14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold591 SAMTools SNP 969797 969797 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold591 SAMTools SNP 969935 969935 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold591 SAMTools SNP 970002 970002 33.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold591 SAMTools SNP 970304 970304 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold591 SAMTools SNP 973233 973233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold591 SAMTools SNP 973262 973262 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold591 SAMTools SNP 973512 973512 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C36%2C0:69 scaffold591 SAMTools SNP 973602 973602 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold591 SAMTools SNP 986303 986303 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold591 SAMTools SNP 986846 986846 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold591 SAMTools SNP 987080 987080 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold591 SAMTools SNP 987082 987082 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold591 SAMTools SNP 987496 987496 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold591 SAMTools SNP 992102 992102 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 992938 992938 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 993252 993252 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold591 SAMTools SNP 994125 994125 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold591 SAMTools SNP 994145 994145 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold591 SAMTools SNP 996206 996206 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 996223 996223 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 998577 998577 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1003511 1003511 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold591 SAMTools SNP 1003952 1003952 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold591 SAMTools SNP 1003961 1003961 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D4.2e-05%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold591 SAMTools SNP 1004889 1004889 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0074%2C0.005%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C42:45 scaffold591 SAMTools SNP 1004892 1004892 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.00091%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold591 SAMTools SNP 1005066 1005066 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold591 SAMTools SNP 1005222 1005222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold591 SAMTools SNP 1005273 1005273 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.1e-52%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C192:40 scaffold591 SAMTools SNP 1005387 1005387 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C14%2C132%2C35%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0006%2C6.5e-222%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold591 SAMTools SNP 1021108 1021108 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1021620 1021620 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 1022256 1022256 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold591 SAMTools SNP 1082098 1082098 64.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold591 SAMTools SNP 1082560 1082560 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold591 SAMTools SNP 1082937 1082937 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1082954 1082954 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.069%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold591 SAMTools SNP 1082985 1082985 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold591 SAMTools SNP 1083697 1083697 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold591 SAMTools SNP 1115422 1115422 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold591 SAMTools SNP 1115603 1115603 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1115629 1115629 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold591 SAMTools SNP 1135559 1135559 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C190%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1135614 1135614 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1135623 1135623 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C90%2C0%2C67%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0034%2C0.035%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold591 SAMTools SNP 1136168 1136168 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.46%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold591 SAMTools SNP 1136171 1136171 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold591 SAMTools SNP 1142987 1142987 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold591 SAMTools SNP 1147951 1147951 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C21%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.3%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C222:99 scaffold591 SAMTools SNP 1147952 1147952 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C230:99 scaffold591 SAMTools SNP 1148222 1148222 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 1156499 1156499 88.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold591 SAMTools SNP 1157178 1157178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1172810 1172810 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold591 SAMTools SNP 1175412 1175412 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D333%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C42%2C66%2C178%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C0.21%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1175421 1175421 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C214%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1175496 1175496 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C108%2C24%2C8%3BMQ%3D50%3BFQ%3D216%3BPV4%3D7.4e-09%2C1%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold591 SAMTools SNP 1176208 1176208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1058%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C427%2C631%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1178874 1178874 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D751%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C205%2C7%2C481%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0079%2C2.5e-243%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold591 SAMTools SNP 1178926 1178926 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D664%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C614%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1179386 1179386 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1179415 1179415 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 1179766 1179766 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1182472 1182472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1182515 1182515 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold591 SAMTools SNP 1184325 1184325 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1188103 1188103 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C9%2C22%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C2.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C201:71 scaffold591 SAMTools SNP 1188551 1188551 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.16%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C79:82 scaffold591 SAMTools SNP 1188584 1188584 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0050%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C31%2C2%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.2%2C0.0075%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold591 SAMTools SNP 1189730 1189730 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C100%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1189979 1189979 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C56%2C3%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1191255 1191255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold591 SAMTools SNP 1192705 1192705 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1192750 1192750 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C36%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold591 SAMTools SNP 1192786 1192786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-06%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1193468 1193468 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C31%2C29%2C45%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.015%2C2.1e-97%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold591 SAMTools SNP 1193486 1193486 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold591 SAMTools SNP 1193702 1193702 153 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C7%2C18%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.059%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold591 SAMTools SNP 1194098 1194098 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 1194237 1194237 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.077%2C0.00043%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold591 SAMTools SNP 1194499 1194499 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold591 SAMTools SNP 1194617 1194617 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C15%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.53%2C1.5e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C225:99 scaffold591 SAMTools SNP 1203708 1203708 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold591 SAMTools SNP 1206323 1206323 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.46%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C45:48 scaffold591 SAMTools SNP 1206328 1206328 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold591 SAMTools SNP 1206755 1206755 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold591 SAMTools SNP 1207613 1207613 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0041%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C77:50 scaffold591 SAMTools SNP 1207631 1207631 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold591 SAMTools SNP 1207709 1207709 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.27%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C216:52 scaffold591 SAMTools SNP 1207730 1207730 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C178:69 scaffold591 SAMTools SNP 1208110 1208110 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold591 SAMTools SNP 1208179 1208179 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1208402 1208402 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1208613 1208613 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 1208686 1208686 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 1208711 1208711 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold591 SAMTools SNP 1209004 1209004 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1209349 1209349 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1209375 1209375 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold591 SAMTools SNP 1211120 1211120 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C209:99 scaffold591 SAMTools SNP 1214819 1214819 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C150:99 scaffold591 SAMTools SNP 1214916 1214916 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C78%2C0:99 scaffold591 SAMTools SNP 1215661 1215661 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1216626 1216626 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold591 SAMTools SNP 1216662 1216662 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold591 SAMTools SNP 1217196 1217196 71.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold591 SAMTools SNP 1217271 1217271 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1218005 1218005 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold591 SAMTools SNP 1218822 1218822 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold591 SAMTools SNP 1219314 1219314 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C30%2C0:57 scaffold591 SAMTools SNP 1219359 1219359 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C39%2C0:75 scaffold591 SAMTools SNP 1221156 1221156 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1221475 1221475 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold591 SAMTools SNP 1221502 1221502 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold591 SAMTools SNP 1221541 1221541 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C33%2C0:63 scaffold591 SAMTools SNP 1221986 1221986 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1221993 1221993 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold591 SAMTools SNP 1222031 1222031 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D30%3BFQ%3D41%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C106:71 scaffold591 SAMTools SNP 1222882 1222882 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D12%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C51%2C0:73 scaffold591 SAMTools SNP 1226293 1226293 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C8%2C0%3BMQ%3D28%3BFQ%3D-34%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C7%2C0:12 scaffold591 SAMTools SNP 1236931 1236931 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D13%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C48%2C0:80 scaffold591 SAMTools SNP 1237996 1237996 7.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D3%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C66%2C0:54 scaffold591 SAMTools SNP 1239194 1239194 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold591 SAMTools SNP 1239202 1239202 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold591 SAMTools SNP 1244442 1244442 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold591 SAMTools SNP 1253837 1253837 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C248:99 scaffold591 SAMTools SNP 1253990 1253990 55.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold591 SAMTools SNP 1255006 1255006 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C12%2C3%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold591 SAMTools SNP 1255114 1255114 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold591 SAMTools SNP 1258012 1258012 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold591 SAMTools SNP 1276127 1276127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1276136 1276136 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1277920 1277920 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1277961 1277961 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold591 SAMTools SNP 1278010 1278010 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold591 SAMTools SNP 1278758 1278758 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold591 SAMTools SNP 1278835 1278835 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1287054 1287054 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold591 SAMTools SNP 1287076 1287076 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold591 SAMTools SNP 1288964 1288964 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.012%2C0.081%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold591 SAMTools SNP 1289302 1289302 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold591 SAMTools SNP 1289305 1289305 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C16%2C12%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.4%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold591 SAMTools SNP 1291024 1291024 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C22%2C1%2C241%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.17%2C0.38%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1291712 1291712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1329992 1329992 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1330132 1330132 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold591 SAMTools SNP 1330296 1330296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1474%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D19%2C0%2C865%2C564%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.00014%2C0.011%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1340158 1340158 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1340232 1340232 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1340661 1340661 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1340685 1340685 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1340815 1340815 15.1 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C21%2C44%2C0%2C41:14 scaffold591 SAMTools SNP 1340847 1340847 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold591 SAMTools SNP 1341178 1341178 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold591 SAMTools SNP 1341280 1341280 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.46%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold591 SAMTools SNP 1344548 1344548 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1344582 1344582 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1350534 1350534 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C5%2C0%3BMQ%3D44%3BFQ%3D75%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold591 SAMTools SNP 1357663 1357663 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C2%2C5%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.66%2C0.0049%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold591 SAMTools SNP 1358071 1358071 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold591 SAMTools SNP 1358930 1358930 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C42%2C19%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.00033%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold591 SAMTools SNP 1359126 1359126 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C74%2C1%2C14%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.46%2C0.0029%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold591 SAMTools SNP 1359156 1359156 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C79%2C1%2C14%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold591 SAMTools SNP 1360171 1360171 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.58%2C0.5%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold591 SAMTools SNP 1360177 1360177 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.57%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold591 SAMTools SNP 1360183 1360183 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.32%2C9.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C82:85 scaffold591 SAMTools SNP 1360273 1360273 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C34%2C47%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1360713 1360713 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C41%2C34%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1360770 1360770 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C49%2C4%2C10%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.76%2C0.012%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold591 SAMTools SNP 1360791 1360791 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C57%2C6%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C7.1e-28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1361238 1361238 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C29%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold591 SAMTools SNP 1361638 1361638 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C14%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold591 SAMTools SNP 1363216 1363216 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C141%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold591 SAMTools SNP 1364553 1364553 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C48%3BMQ%3D48%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C184%2C0:99 scaffold591 SAMTools SNP 1366340 1366340 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C6%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1366342 1366342 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C8%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1367049 1367049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold591 SAMTools SNP 1367084 1367084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C2%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold591 SAMTools SNP 1368702 1368702 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold591 SAMTools SNP 1374158 1374158 113 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C6%2C2%3BMQ%3D45%3BFQ%3D116%3BPV4%3D0.67%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold591 SAMTools SNP 1374192 1374192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C14%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1379519 1379519 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1379537 1379537 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C0%2C119%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1380816 1380816 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C96%2C106%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1.3e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1381975 1381975 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 1381996 1381996 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1382011 1382011 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1382027 1382027 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold591 SAMTools SNP 1382072 1382072 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold591 SAMTools SNP 1382206 1382206 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C71:74 scaffold591 SAMTools SNP 1382877 1382877 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1382886 1382886 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold591 SAMTools SNP 1383397 1383397 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold591 SAMTools SNP 1390434 1390434 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold591 SAMTools SNP 1391276 1391276 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold591 SAMTools SNP 1410355 1410355 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C30%2C0:57 scaffold591 SAMTools SNP 1410377 1410377 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.27%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold591 SAMTools SNP 1410385 1410385 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold591 SAMTools SNP 1410838 1410838 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.37%2C3.2e-11%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C226:31 scaffold591 SAMTools SNP 1411113 1411113 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C27%2C0:50 scaffold591 SAMTools SNP 1411238 1411238 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C45%2C0:87 scaffold591 SAMTools SNP 1411406 1411406 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.079%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold591 SAMTools SNP 1411621 1411621 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C39%2C0:75 scaffold591 SAMTools SNP 1411827 1411827 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C24%2C0:45 scaffold591 SAMTools SNP 1414264 1414264 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C7%2C0%3BMQ%3D49%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C227:99 scaffold591 SAMTools SNP 1414725 1414725 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold591 SAMTools SNP 1425132 1425132 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold591 SAMTools SNP 1425603 1425603 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C33%2C10%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold591 SAMTools SNP 1425616 1425616 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C33%2C10%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 13337 13337 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold592 SAMTools SNP 13360 13360 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold592 SAMTools SNP 34052 34052 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold592 SAMTools SNP 34055 34055 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold592 SAMTools SNP 34232 34232 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold592 SAMTools SNP 34495 34495 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold592 SAMTools SNP 35232 35232 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold592 SAMTools SNP 35259 35259 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold592 SAMTools SNP 36306 36306 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold592 SAMTools SNP 37368 37368 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 55558 55558 18.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold592 SAMTools SNP 55691 55691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold592 SAMTools SNP 55867 55867 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.27%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold592 SAMTools SNP 55921 55921 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold592 SAMTools SNP 56072 56072 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C45%2C0:73 scaffold592 SAMTools SNP 60448 60448 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold592 SAMTools SNP 83913 83913 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 83956 83956 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 89204 89204 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold592 SAMTools SNP 97651 97651 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.8e-05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold592 SAMTools SNP 99857 99857 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0037%2C0.082%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C116:99 scaffold592 SAMTools SNP 99984 99984 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold592 SAMTools SNP 127376 127376 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D47%3BFQ%3D89%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C116:99 scaffold592 SAMTools SNP 131230 131230 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold592 SAMTools SNP 133029 133029 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 136297 136297 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold592 SAMTools SNP 138274 138274 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 142233 142233 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 142247 142247 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold592 SAMTools SNP 145520 145520 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C4%2C3%3BMQ%3D49%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold592 SAMTools SNP 145577 145577 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C4%3BMQ%3D48%3BFQ%3D201%3BPV4%3D0.61%2C0.18%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C237:99 scaffold592 SAMTools SNP 145629 145629 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D2.3e-05%2C0.14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold592 SAMTools SNP 147094 147094 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C17%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D2.3e-05%2C0.26%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold592 SAMTools SNP 147699 147699 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold592 SAMTools SNP 147726 147726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold592 SAMTools SNP 148307 148307 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold592 SAMTools SNP 148310 148310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold592 SAMTools SNP 148340 148340 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C15%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C89:92 scaffold592 SAMTools SNP 148682 148682 69.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C18%2C0:33 scaffold592 SAMTools SNP 148721 148721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold592 SAMTools SNP 148778 148778 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C4%3BMQ%3D49%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold592 SAMTools SNP 149348 149348 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C21%2C51%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.14%2C1.6e-05%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold592 SAMTools SNP 149386 149386 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C7%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.081%2C0.063%2C0.03%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 149473 149473 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold592 SAMTools SNP 149482 149482 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C34%2C0%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.26%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold592 SAMTools SNP 149969 149969 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold592 SAMTools SNP 151031 151031 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold592 SAMTools SNP 151040 151040 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold592 SAMTools SNP 151480 151480 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold592 SAMTools SNP 151485 151485 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.012%2C3.2e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold592 SAMTools SNP 152112 152112 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C4%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold592 SAMTools SNP 152118 152118 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold592 SAMTools SNP 152175 152175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D0.05%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C70%2C0:99 scaffold592 SAMTools SNP 152208 152208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C65%3BMQ%3D50%3BFQ%3D-176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C0:99 scaffold592 SAMTools SNP 152403 152403 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold592 SAMTools SNP 154823 154823 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold592 SAMTools SNP 155093 155093 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold592 SAMTools SNP 155162 155162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold592 SAMTools SNP 155348 155348 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C39%2C20%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D0.13%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold592 SAMTools SNP 155804 155804 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 155900 155900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold592 SAMTools SNP 156083 156083 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.39%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold592 SAMTools SNP 156116 156116 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold592 SAMTools SNP 156140 156140 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold592 SAMTools SNP 156266 156266 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold592 SAMTools SNP 156392 156392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold592 SAMTools SNP 157036 157036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold592 SAMTools SNP 157262 157262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C50%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold592 SAMTools SNP 157289 157289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C54%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold592 SAMTools SNP 157617 157617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C7%2C80%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 158081 158081 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C12%2C24%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 158207 158207 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C16%2C10%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C2e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold592 SAMTools SNP 158216 158216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold592 SAMTools SNP 158219 158219 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C53%2C5%2C14%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.14%2C0.032%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold592 SAMTools SNP 161565 161565 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C26%2C44%2C28%3BMQ%3D49%3BFQ%3D154%3BPV4%3D0.61%2C3.3e-90%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold592 SAMTools SNP 161628 161628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C48%2C11%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1.4e-35%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 165809 165809 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold592 SAMTools SNP 165818 165818 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold592 SAMTools SNP 165827 165827 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold592 SAMTools SNP 165863 165863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold592 SAMTools SNP 171520 171520 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 171577 171577 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.4%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold592 SAMTools SNP 171938 171938 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold592 SAMTools SNP 171950 171950 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.33%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold592 SAMTools SNP 172016 172016 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 172654 172654 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold592 SAMTools SNP 172658 172658 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold592 SAMTools SNP 172709 172709 58.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold592 SAMTools SNP 172712 172712 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold592 SAMTools SNP 183253 183253 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold592 SAMTools SNP 183286 183286 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold592 SAMTools SNP 184858 184858 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 184883 184883 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 185872 185872 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold592 SAMTools SNP 185884 185884 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold592 SAMTools SNP 206503 206503 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 207414 207414 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 207511 207511 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold592 SAMTools SNP 213442 213442 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 213485 213485 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold592 SAMTools SNP 213493 213493 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold592 SAMTools SNP 250860 250860 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold592 SAMTools SNP 250884 250884 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold592 SAMTools SNP 253478 253478 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold592 SAMTools SNP 253481 253481 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold592 SAMTools SNP 253485 253485 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.067%2C0.0097%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C223:39 scaffold592 SAMTools SNP 253533 253533 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.13%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold592 SAMTools SNP 255150 255150 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.13%2C0.41%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C191:99 scaffold592 SAMTools SNP 255174 255174 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold592 SAMTools SNP 255207 255207 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold592 SAMTools SNP 255731 255731 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.36%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold592 SAMTools SNP 255757 255757 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold592 SAMTools SNP 255763 255763 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold592 SAMTools SNP 255803 255803 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold592 SAMTools SNP 257220 257220 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold592 SAMTools SNP 263742 263742 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D47%3BFQ%3D-42%3BPV4%3D0.12%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold592 SAMTools SNP 264168 264168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C12%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-07%2C0.16%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 264507 264507 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C9%2C33%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.7e-05%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold592 SAMTools SNP 266648 266648 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C32%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold592 SAMTools SNP 266663 266663 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 266699 266699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold592 SAMTools SNP 266702 266702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold592 SAMTools SNP 267557 267557 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C6%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D0.28%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold592 SAMTools SNP 267584 267584 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold592 SAMTools SNP 267632 267632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C7%2C7%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0078%2C4.3e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold592 SAMTools SNP 267692 267692 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.042%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold592 SAMTools SNP 271030 271030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C19%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold592 SAMTools SNP 272593 272593 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold593 SAMTools SNP 18046 18046 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 18065 18065 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 69184 69184 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 69468 69468 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold593 SAMTools SNP 69505 69505 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold593 SAMTools SNP 69584 69584 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold593 SAMTools SNP 69661 69661 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 70701 70701 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 70704 70704 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C103:39 scaffold593 SAMTools SNP 70915 70915 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold593 SAMTools SNP 70924 70924 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 103470 103470 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C6.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C23:26 scaffold593 SAMTools SNP 104104 104104 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.04%3BPV4%3D0.17%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C32:35 scaffold593 SAMTools SNP 106407 106407 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold593 SAMTools SNP 106565 106565 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 106802 106802 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold593 SAMTools SNP 253150 253150 28.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold593 SAMTools SNP 254501 254501 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 256407 256407 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold593 SAMTools SNP 258302 258302 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold593 SAMTools SNP 258350 258350 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold593 SAMTools SNP 287664 287664 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 288005 288005 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold593 SAMTools SNP 288084 288084 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold593 SAMTools SNP 288514 288514 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D69%3BPV4%3D7.3e-07%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold593 SAMTools SNP 288997 288997 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold593 SAMTools SNP 289053 289053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C43%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D0.3%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold593 SAMTools SNP 289104 289104 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 289690 289690 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C173%2C16%2C22%3BMQ%3D50%3BFQ%3D153%3BPV4%3D4.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold593 SAMTools SNP 291008 291008 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C86%2C67%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 291041 291041 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C17%2C10%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.059%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold593 SAMTools SNP 291080 291080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 291107 291107 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C113%2C21%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00032%2C0.0068%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 291468 291468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C533%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 291567 291567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D649%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold593 SAMTools SNP 292148 292148 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C212%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 292492 292492 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C39%2C27%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.089%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 292507 292507 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C22%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 292537 292537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold593 SAMTools SNP 292553 292553 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C74%2C15%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1.1e-10%2C1%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold593 SAMTools SNP 292968 292968 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C98%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D3.5e-09%2C0.15%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C76:79 scaffold593 SAMTools SNP 292995 292995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C58%2C32%3BMQ%3D50%3BFQ%3D-251%3BPV4%3D1%2C1%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C224%2C0:99 scaffold593 SAMTools SNP 293013 293013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C60%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold593 SAMTools SNP 293528 293528 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C72%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold593 SAMTools SNP 293889 293889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C31%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-06%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 293926 293926 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold593 SAMTools SNP 297392 297392 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C148:99 scaffold593 SAMTools SNP 297414 297414 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0019%2C0.094%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C240:99 scaffold593 SAMTools SNP 297723 297723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C35%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold593 SAMTools SNP 298008 298008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C8%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold593 SAMTools SNP 298053 298053 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C41%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold593 SAMTools SNP 298282 298282 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C0%2C12%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.56%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold593 SAMTools SNP 298327 298327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold593 SAMTools SNP 299088 299088 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold593 SAMTools SNP 299097 299097 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 299121 299121 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold593 SAMTools SNP 299172 299172 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 299181 299181 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 299725 299725 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 299737 299737 56.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold593 SAMTools SNP 299860 299860 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold593 SAMTools SNP 300180 300180 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C2%2C40%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.52%2C0.055%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold593 SAMTools SNP 300185 300185 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 300213 300213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold593 SAMTools SNP 300279 300279 96 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C62%2C1%2C38%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C3e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold593 SAMTools SNP 300578 300578 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold593 SAMTools SNP 300626 300626 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold593 SAMTools SNP 300938 300938 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 300953 300953 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 300989 300989 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 301013 301013 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold593 SAMTools SNP 301064 301064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C34%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 301420 301420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 301577 301577 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.39%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold593 SAMTools SNP 301586 301586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold593 SAMTools SNP 301997 301997 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.014%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold593 SAMTools SNP 302015 302015 224 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.041%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C138:99 scaffold593 SAMTools SNP 302312 302312 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold593 SAMTools SNP 302681 302681 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C225:99 scaffold593 SAMTools SNP 303104 303104 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold593 SAMTools SNP 303106 303106 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold593 SAMTools SNP 303456 303456 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold593 SAMTools SNP 304161 304161 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold593 SAMTools SNP 304456 304456 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C0.022%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold593 SAMTools SNP 304939 304939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold593 SAMTools SNP 304972 304972 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold593 SAMTools SNP 305482 305482 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold593 SAMTools SNP 305512 305512 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C35%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold593 SAMTools SNP 305596 305596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold593 SAMTools SNP 305626 305626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold593 SAMTools SNP 306196 306196 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 306419 306419 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 306452 306452 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold593 SAMTools SNP 306474 306474 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold593 SAMTools SNP 307185 307185 60.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold593 SAMTools SNP 307401 307401 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D46%2C30%2C18%2C10%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.82%2C5.3e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold593 SAMTools SNP 307431 307431 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C22%2C44%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C7.6e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 307665 307665 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C5.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C26:29 scaffold593 SAMTools SNP 307851 307851 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C11%2C9%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C3.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold593 SAMTools SNP 307962 307962 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C5.2e-15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C247:65 scaffold593 SAMTools SNP 308202 308202 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold593 SAMTools SNP 308421 308421 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C12%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.03%2C3.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold593 SAMTools SNP 308458 308458 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0169%3BAF1%3D0.5019%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-7.07%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C21:25 scaffold593 SAMTools SNP 308807 308807 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C51%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C166%2C0:99 scaffold593 SAMTools SNP 310141 310141 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold593 SAMTools SNP 311115 311115 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C54%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C187%2C0:99 scaffold593 SAMTools SNP 311160 311160 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C24%2C0:45 scaffold593 SAMTools SNP 311497 311497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold593 SAMTools SNP 312231 312231 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.033%2C1.6e-17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C245:99 scaffold593 SAMTools SNP 312813 312813 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold593 SAMTools SNP 313317 313317 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold593 SAMTools SNP 313515 313515 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C5.7e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 314025 314025 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C3.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C141:75 scaffold593 SAMTools SNP 314679 314679 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C27%2C0:51 scaffold593 SAMTools SNP 314885 314885 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C63%2C0:99 scaffold593 SAMTools SNP 315195 315195 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.67%2C5.5e-33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold593 SAMTools SNP 315240 315240 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C31%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C7.2e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold593 SAMTools SNP 315537 315537 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold593 SAMTools SNP 316020 316020 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold593 SAMTools SNP 316563 316563 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C3.2e-08%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C228:93 scaffold593 SAMTools SNP 316739 316739 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C239:34 scaffold593 SAMTools SNP 316812 316812 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.12%2C7.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold593 SAMTools SNP 316938 316938 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold593 SAMTools SNP 317222 317222 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 317372 317372 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold593 SAMTools SNP 317378 317378 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold593 SAMTools SNP 317422 317422 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.31%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C180:99 scaffold593 SAMTools SNP 317642 317642 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold593 SAMTools SNP 317838 317838 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 317847 317847 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold593 SAMTools SNP 317865 317865 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold593 SAMTools SNP 318237 318237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold593 SAMTools SNP 318298 318298 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold593 SAMTools SNP 318508 318508 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 318520 318520 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 319221 319221 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 319408 319408 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 319456 319456 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C204:99 scaffold593 SAMTools SNP 319485 319485 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold593 SAMTools SNP 319939 319939 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.41%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold593 SAMTools SNP 320029 320029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 320240 320240 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold593 SAMTools SNP 320363 320363 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold593 SAMTools SNP 321032 321032 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 321068 321068 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 321095 321095 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 321948 321948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold593 SAMTools SNP 322002 322002 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.39%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold593 SAMTools SNP 322381 322381 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C187:31 scaffold593 SAMTools SNP 322553 322553 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C226:51 scaffold593 SAMTools SNP 322588 322588 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.18%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C66:69 scaffold593 SAMTools SNP 323027 323027 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.45%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold593 SAMTools SNP 323353 323353 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold593 SAMTools SNP 323739 323739 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 324128 324128 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold593 SAMTools SNP 324396 324396 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 324402 324402 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold593 SAMTools SNP 325552 325552 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C108:77 scaffold593 SAMTools SNP 325564 325564 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold593 SAMTools SNP 325959 325959 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C191:99 scaffold593 SAMTools SNP 326019 326019 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold593 SAMTools SNP 326046 326046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold593 SAMTools SNP 326299 326299 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 326645 326645 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 327068 327068 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold593 SAMTools SNP 327080 327080 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold593 SAMTools SNP 327134 327134 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold593 SAMTools SNP 327158 327158 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C74:77 scaffold593 SAMTools SNP 327436 327436 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C209:72 scaffold593 SAMTools SNP 327685 327685 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 328073 328073 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold593 SAMTools SNP 328522 328522 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold593 SAMTools SNP 328552 328552 38.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold593 SAMTools SNP 328609 328609 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold593 SAMTools SNP 328630 328630 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold593 SAMTools SNP 329030 329030 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 329045 329045 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 329335 329335 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 329476 329476 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D23.9%3BPV4%3D1%2C1.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C51:54 scaffold593 SAMTools SNP 329530 329530 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 329552 329552 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold593 SAMTools SNP 330046 330046 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold593 SAMTools SNP 330079 330079 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 330223 330223 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold593 SAMTools SNP 330227 330227 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold593 SAMTools SNP 330361 330361 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0046%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold593 SAMTools SNP 331159 331159 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0090%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.3%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold593 SAMTools SNP 331169 331169 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.42%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold593 SAMTools SNP 331202 331202 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold593 SAMTools SNP 331670 331670 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 331987 331987 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 332958 332958 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 333539 333539 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.33%2C0%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold593 SAMTools SNP 333554 333554 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold593 SAMTools SNP 334131 334131 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold593 SAMTools SNP 334267 334267 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 334268 334268 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 334656 334656 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold593 SAMTools SNP 334668 334668 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold593 SAMTools SNP 334863 334863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold593 SAMTools SNP 335249 335249 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C162:99 scaffold593 SAMTools SNP 335273 335273 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold593 SAMTools SNP 335281 335281 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.52%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold593 SAMTools SNP 335757 335757 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 335763 335763 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 336246 336246 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold593 SAMTools SNP 336430 336430 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold593 SAMTools SNP 336469 336469 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold593 SAMTools SNP 336631 336631 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C77:80 scaffold593 SAMTools SNP 336682 336682 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 336828 336828 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C8.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C29:32 scaffold593 SAMTools SNP 336964 336964 59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C2.8e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C163:92 scaffold593 SAMTools SNP 336988 336988 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 337346 337346 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold593 SAMTools SNP 337388 337388 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold593 SAMTools SNP 337421 337421 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C30:32 scaffold593 SAMTools SNP 337604 337604 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold593 SAMTools SNP 337788 337788 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold593 SAMTools SNP 339440 339440 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold593 SAMTools SNP 339910 339910 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 339922 339922 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 340043 340043 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold593 SAMTools SNP 340160 340160 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold593 SAMTools SNP 340233 340233 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.4%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C85:37 scaffold593 SAMTools SNP 340308 340308 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 340641 340641 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 340780 340780 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 340798 340798 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 341366 341366 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C112:74 scaffold593 SAMTools SNP 341420 341420 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold593 SAMTools SNP 341626 341626 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold593 SAMTools SNP 341659 341659 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 342833 342833 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold593 SAMTools SNP 343255 343255 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold593 SAMTools SNP 343693 343693 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 343856 343856 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 345379 345379 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 345470 345470 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold593 SAMTools SNP 345612 345612 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 345654 345654 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold593 SAMTools SNP 345676 345676 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold593 SAMTools SNP 346101 346101 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 346375 346375 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 346399 346399 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 346568 346568 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold593 SAMTools SNP 346606 346606 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 346748 346748 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 347014 347014 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 347554 347554 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C138:66 scaffold593 SAMTools SNP 347829 347829 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold593 SAMTools SNP 347856 347856 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold593 SAMTools SNP 348261 348261 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.055%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C201:68 scaffold593 SAMTools SNP 348814 348814 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 349813 349813 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 349840 349840 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 351087 351087 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold593 SAMTools SNP 351105 351105 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 351111 351111 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold593 SAMTools SNP 351633 351633 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 351970 351970 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 351998 351998 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 352117 352117 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.47%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C222:99 scaffold593 SAMTools SNP 352277 352277 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.011%2C0.0011%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C226:39 scaffold593 SAMTools SNP 352308 352308 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold593 SAMTools SNP 352579 352579 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 352645 352645 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold593 SAMTools SNP 353391 353391 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 353405 353405 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 353502 353502 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 353862 353862 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 354018 354018 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 354418 354418 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 354752 354752 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 355189 355189 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 355203 355203 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 355876 355876 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 356405 356405 33.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold593 SAMTools SNP 357424 357424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 357785 357785 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 357797 357797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 358424 358424 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 362288 362288 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold593 SAMTools SNP 363268 363268 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.079%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C128:51 scaffold593 SAMTools SNP 363279 363279 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0083%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold593 SAMTools SNP 363646 363646 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold593 SAMTools SNP 364392 364392 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold593 SAMTools SNP 365727 365727 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.014%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold593 SAMTools SNP 365730 365730 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold593 SAMTools SNP 366563 366563 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 366603 366603 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 368328 368328 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 368592 368592 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 369228 369228 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 369485 369485 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold593 SAMTools SNP 370967 370967 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold593 SAMTools SNP 372905 372905 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold593 SAMTools SNP 373655 373655 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 374950 374950 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 375403 375403 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 375428 375428 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 376224 376224 3.83 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C36%2C24%2C29%2C0%2C26:10 scaffold593 SAMTools SNP 376550 376550 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold593 SAMTools SNP 377600 377600 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold593 SAMTools SNP 377602 377602 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold593 SAMTools SNP 377633 377633 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C112:53 scaffold593 SAMTools SNP 402164 402164 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 402212 402212 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C49%2C7%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 402413 402413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold593 SAMTools SNP 402428 402428 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold593 SAMTools SNP 405571 405571 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C2%2C31%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold593 SAMTools SNP 405610 405610 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C79%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold593 SAMTools SNP 405613 405613 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C21%2C24%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0067%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold593 SAMTools SNP 405631 405631 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C40%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 405646 405646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C34%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.078%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 406282 406282 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C102%2C3%2C30%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.72%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold593 SAMTools SNP 407017 407017 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold593 SAMTools SNP 407023 407023 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold593 SAMTools SNP 407041 407041 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.13%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 407457 407457 55.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold593 SAMTools SNP 407667 407667 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C13%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0061%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold593 SAMTools SNP 408295 408295 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold593 SAMTools SNP 408340 408340 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C13%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.00028%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold593 SAMTools SNP 408523 408523 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C37%2C1%2C21%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0044%2C1.2e-06%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold593 SAMTools SNP 409215 409215 55.8 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold593 SAMTools SNP 409435 409435 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C9%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold593 SAMTools SNP 409932 409932 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C21%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.074%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 410376 410376 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C19%2C13%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.73%2C0.14%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold593 SAMTools SNP 410391 410391 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C12%2C25%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.29%2C9.3e-12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold593 SAMTools SNP 410688 410688 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold593 SAMTools SNP 411644 411644 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C49%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C157%2C0:99 scaffold593 SAMTools SNP 413499 413499 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C32%2C35%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.011%2C5.4e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold593 SAMTools SNP 413534 413534 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0028%2C0.00012%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold593 SAMTools SNP 413910 413910 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C56%2C3%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.71%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold593 SAMTools SNP 413913 413913 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C0%2C45%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2e-06%2C1.2e-17%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold593 SAMTools SNP 414413 414413 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C15%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold593 SAMTools SNP 414794 414794 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C4%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C2.4e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 421032 421032 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C56%2C18%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold593 SAMTools SNP 421469 421469 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C54%2C15%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.00039%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold593 SAMTools SNP 421613 421613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 421628 421628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold593 SAMTools SNP 422609 422609 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C64%2C7%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 423287 423287 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C157%2C17%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 423323 423323 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C161%2C27%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 435705 435705 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 436773 436773 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold593 SAMTools SNP 437698 437698 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C66:43 scaffold593 SAMTools SNP 456635 456635 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C0.42%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C251:99 scaffold593 SAMTools SNP 456702 456702 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold593 SAMTools SNP 457179 457179 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold593 SAMTools SNP 459140 459140 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold593 SAMTools SNP 459463 459463 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.4%2C1.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold593 SAMTools SNP 462944 462944 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C12%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold593 SAMTools SNP 462962 462962 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C5%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.066%2C0.059%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold593 SAMTools SNP 462992 462992 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C1%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.13%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold593 SAMTools SNP 463107 463107 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C1%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold593 SAMTools SNP 463182 463182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold593 SAMTools SNP 463638 463638 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C19%3BMQ%3D50%3BFQ%3D195%3BPV4%3D6.9e-05%2C0.44%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold593 SAMTools SNP 463692 463692 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold593 SAMTools SNP 463695 463695 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 463704 463704 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold593 SAMTools SNP 463746 463746 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C93:96 scaffold593 SAMTools SNP 463761 463761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold593 SAMTools SNP 464080 464080 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold593 SAMTools SNP 464254 464254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold593 SAMTools SNP 464316 464316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 465354 465354 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.47%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C152:52 scaffold593 SAMTools SNP 465522 465522 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold593 SAMTools SNP 465997 465997 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 467648 467648 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C8%2C26%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.35%2C5.6e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold593 SAMTools SNP 467723 467723 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold593 SAMTools SNP 468052 468052 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold593 SAMTools SNP 468395 468395 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C7%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.086%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold593 SAMTools SNP 469620 469620 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold593 SAMTools SNP 469914 469914 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D34%3BFQ%3D-32%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C5%2C0:9 scaffold593 SAMTools SNP 470519 470519 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.028%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C74:77 scaffold593 SAMTools SNP 470535 470535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold593 SAMTools SNP 472605 472605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C5%2C11%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.75%2C0.38%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 472617 472617 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C5%2C3%3BMQ%3D39%3BFQ%3D148%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold593 SAMTools SNP 473773 473773 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C2%2C157%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 474367 474367 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0063%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold593 SAMTools SNP 474551 474551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C38%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold593 SAMTools SNP 474620 474620 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C24%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.12%2C0.3%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold593 SAMTools SNP 475037 475037 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold593 SAMTools SNP 476714 476714 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C27%2C17%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.078%2C6.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold593 SAMTools SNP 476793 476793 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold593 SAMTools SNP 480530 480530 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C30%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.24%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold593 SAMTools SNP 481394 481394 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D928%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D429%2C12%2C475%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.84%2C4.7e-318%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold593 SAMTools SNP 481452 481452 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C186%2C0%2C186%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 481470 481470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D905%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C428%2C0%2C477%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 482233 482233 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C134%2C0%2C256%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold593 SAMTools SNP 484861 484861 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold593 SAMTools SNP 485926 485926 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold593 SAMTools SNP 485941 485941 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold593 SAMTools SNP 485980 485980 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.26%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold593 SAMTools SNP 486349 486349 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.24%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C112:99 scaffold593 SAMTools SNP 486366 486366 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C7.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold593 SAMTools SNP 486420 486420 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold593 SAMTools SNP 486434 486434 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold593 SAMTools SNP 486790 486790 138 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C30%2C15%2C164%2C0%2C161:27 scaffold593 SAMTools SNP 498103 498103 43.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold593 SAMTools SNP 556387 556387 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C23%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold593 SAMTools SNP 568406 568406 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 568411 568411 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 568708 568708 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold593 SAMTools SNP 568757 568757 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 601297 601297 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.15%2C0.0066%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold593 SAMTools SNP 601327 601327 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold593 SAMTools SNP 604356 604356 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold593 SAMTools SNP 604375 604375 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C88:52 scaffold593 SAMTools SNP 604470 604470 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0068%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold593 SAMTools SNP 707227 707227 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold593 SAMTools SNP 712649 712649 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C30%2C0:56 scaffold593 SAMTools SNP 714665 714665 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C9%2C0:16 scaffold593 SAMTools SNP 715032 715032 6.79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold593 SAMTools SNP 739017 739017 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold593 SAMTools SNP 739079 739079 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold593 SAMTools SNP 761236 761236 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold594 SAMTools SNP 4059 4059 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 17425 17425 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C6%2C14%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.39%2C4e-34%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold594 SAMTools SNP 17739 17739 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 21255 21255 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2144%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1110%2C666%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold594 SAMTools SNP 21835 21835 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2453%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C1336%2C31%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.09%2C2e-24%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C255%2C0:99 scaffold594 SAMTools SNP 21867 21867 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2255%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D38.4%3BPV4%3D1%2C7.9e-07%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C66:68 scaffold594 SAMTools SNP 22660 22660 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold594 SAMTools SNP 22663 22663 64.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold594 SAMTools SNP 23932 23932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold594 SAMTools SNP 25243 25243 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold594 SAMTools SNP 25297 25297 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold594 SAMTools SNP 25321 25321 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold594 SAMTools SNP 26754 26754 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 26792 26792 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 27685 27685 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 27721 27721 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 27853 27853 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 27903 27903 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 28095 28095 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 28323 28323 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C2:5 scaffold594 SAMTools SNP 28634 28634 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold594 SAMTools SNP 28748 28748 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold594 SAMTools SNP 29020 29020 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold594 SAMTools SNP 29029 29029 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold594 SAMTools SNP 29598 29598 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold594 SAMTools SNP 29626 29626 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C117:46 scaffold594 SAMTools SNP 29982 29982 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0029%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold594 SAMTools SNP 30568 30568 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold594 SAMTools SNP 31466 31466 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold594 SAMTools SNP 31481 31481 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 31493 31493 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 31866 31866 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold594 SAMTools SNP 31877 31877 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 33805 33805 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold594 SAMTools SNP 33856 33856 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold594 SAMTools SNP 33871 33871 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold594 SAMTools SNP 34411 34411 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold594 SAMTools SNP 35633 35633 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold594 SAMTools SNP 35684 35684 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 35756 35756 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold594 SAMTools SNP 35774 35774 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold594 SAMTools SNP 36047 36047 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.47%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C254:99 scaffold594 SAMTools SNP 36234 36234 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.33%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold594 SAMTools SNP 36615 36615 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold594 SAMTools SNP 36675 36675 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold594 SAMTools SNP 38204 38204 3.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold594 SAMTools SNP 38276 38276 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C70:34 scaffold594 SAMTools SNP 51546 51546 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0119%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold594 SAMTools SNP 52612 52612 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C54:57 scaffold594 SAMTools SNP 52640 52640 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.3%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C144:39 scaffold594 SAMTools SNP 55695 55695 97.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold594 SAMTools SNP 75004 75004 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold594 SAMTools SNP 91056 91056 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 91096 91096 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold594 SAMTools SNP 92912 92912 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold594 SAMTools SNP 93994 93994 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold594 SAMTools SNP 101044 101044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold594 SAMTools SNP 101069 101069 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold594 SAMTools SNP 101157 101157 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold594 SAMTools SNP 101167 101167 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold594 SAMTools SNP 102775 102775 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold594 SAMTools SNP 104596 104596 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold594 SAMTools SNP 111784 111784 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold594 SAMTools SNP 112926 112926 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold594 SAMTools SNP 112940 112940 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.42%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C180:99 scaffold594 SAMTools SNP 113649 113649 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold594 SAMTools SNP 114012 114012 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 114350 114350 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.059%2C0.081%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C183:99 scaffold594 SAMTools SNP 114357 114357 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold594 SAMTools SNP 114376 114376 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C20%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold594 SAMTools SNP 114510 114510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold594 SAMTools SNP 114511 114511 201 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold594 SAMTools SNP 114909 114909 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.32%2C3.2e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold594 SAMTools SNP 115013 115013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold594 SAMTools SNP 115235 115235 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold594 SAMTools SNP 115241 115241 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D0.1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C77:80 scaffold594 SAMTools SNP 115472 115472 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 116080 116080 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.07%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold594 SAMTools SNP 116261 116261 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold594 SAMTools SNP 116279 116279 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.23%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold594 SAMTools SNP 116363 116363 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold594 SAMTools SNP 116792 116792 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.14%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold594 SAMTools SNP 116836 116836 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold594 SAMTools SNP 116845 116845 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C2%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.36%2C0.0004%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold594 SAMTools SNP 116922 116922 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold594 SAMTools SNP 117052 117052 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C17%2C4%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.14%2C0.00026%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C209:99 scaffold594 SAMTools SNP 117481 117481 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C35%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C203:99 scaffold594 SAMTools SNP 117509 117509 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.31%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 117545 117545 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold594 SAMTools SNP 117823 117823 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.73%2C2.5e-20%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold594 SAMTools SNP 117854 117854 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.074%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold594 SAMTools SNP 118202 118202 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 118235 118235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 119897 119897 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C6%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.075%2C4.5e-09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold594 SAMTools SNP 120022 120022 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C15%2C12%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C221:99 scaffold594 SAMTools SNP 121051 121051 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C5.4e-07%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C202:73 scaffold594 SAMTools SNP 123093 123093 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C31%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold594 SAMTools SNP 123116 123116 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C35%2C18%2C21%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.069%2C3e-72%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold594 SAMTools SNP 159282 159282 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C35:34 scaffold594 SAMTools SNP 163936 163936 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold594 SAMTools SNP 164106 164106 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D46%3BFQ%3D54%3BPV4%3D1%2C4.9e-05%2C0.27%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C82:84 scaffold594 SAMTools SNP 164862 164862 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold594 SAMTools SNP 167009 167009 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold594 SAMTools SNP 173222 173222 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold594 SAMTools SNP 173288 173288 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold594 SAMTools SNP 181692 181692 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C17%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 181743 181743 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C42%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold594 SAMTools SNP 182890 182890 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 182902 182902 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C0.13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 182932 182932 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 183347 183347 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C2%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold594 SAMTools SNP 183356 183356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold594 SAMTools SNP 184861 184861 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 185623 185623 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C170:31 scaffold594 SAMTools SNP 187034 187034 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C1%2C1%2C9.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold594 SAMTools SNP 187038 187038 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold594 SAMTools SNP 187101 187101 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 187937 187937 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C9%2C69%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 188663 188663 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold594 SAMTools SNP 189140 189140 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold594 SAMTools SNP 189191 189191 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold594 SAMTools SNP 189224 189224 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold594 SAMTools SNP 189576 189576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold594 SAMTools SNP 190423 190423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold594 SAMTools SNP 190438 190438 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.017%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold594 SAMTools SNP 190454 190454 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold594 SAMTools SNP 190471 190471 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C28%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold594 SAMTools SNP 191299 191299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 196501 196501 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D1%2C1.1e-07%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C153:28 scaffold594 SAMTools SNP 196650 196650 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold594 SAMTools SNP 206160 206160 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C92%2C17%2C112%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C1.8e-55%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 206180 206180 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C102%2C4%2C21%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.75%2C1%2C0.11%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold594 SAMTools SNP 206530 206530 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C5%3BMQ%3D49%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold594 SAMTools SNP 206531 206531 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C0%2C14%3BMQ%3D49%3BFQ%3D151%3BPV4%3D0.56%2C0.0037%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold594 SAMTools SNP 206562 206562 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C15%3BMQ%3D46%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C234:99 scaffold594 SAMTools SNP 206563 206563 189 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C14%3BMQ%3D46%3BFQ%3D192%3BPV4%3D0.24%2C0.49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C236:99 scaffold594 SAMTools SNP 206605 206605 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D21%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C33%2C0:63 scaffold594 SAMTools SNP 206623 206623 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C2%3BMQ%3D34%3BFQ%3D68%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C95:98 scaffold594 SAMTools SNP 206996 206996 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C0%3BMQ%3D31%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C99:57 scaffold594 SAMTools SNP 207627 207627 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C55%2C10%2C38%3BMQ%3D49%3BFQ%3D109%3BPV4%3D0.044%2C5.5e-43%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold594 SAMTools SNP 208059 208059 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C5%2C1%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D0.065%2C0.00035%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold594 SAMTools SNP 208613 208613 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 215767 215767 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold594 SAMTools SNP 216513 216513 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold594 SAMTools SNP 217209 217209 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold594 SAMTools SNP 232404 232404 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold594 SAMTools SNP 232419 232419 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold594 SAMTools SNP 232712 232712 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold594 SAMTools SNP 232742 232742 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold594 SAMTools SNP 232745 232745 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold594 SAMTools SNP 232968 232968 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold594 SAMTools SNP 233004 233004 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold594 SAMTools SNP 233196 233196 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 233235 233235 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold594 SAMTools SNP 233253 233253 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold594 SAMTools SNP 234322 234322 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 234325 234325 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 234367 234367 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold594 SAMTools SNP 234385 234385 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold594 SAMTools SNP 234929 234929 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.44%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C151:86 scaffold594 SAMTools SNP 234970 234970 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold594 SAMTools SNP 235031 235031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C9%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold594 SAMTools SNP 236000 236000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold594 SAMTools SNP 237058 237058 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.099%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold594 SAMTools SNP 237088 237088 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 238579 238579 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 242686 242686 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold594 SAMTools SNP 245767 245767 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C56%2C31%2C29%3BMQ%3D34%3BFQ%3D225%3BPV4%3D7.1e-06%2C1.2e-05%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 245861 245861 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C0%2C9%3BMQ%3D47%3BFQ%3D48%3BPV4%3D0.0015%2C1%2C9.9e-08%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold594 SAMTools SNP 245959 245959 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C15%2C18%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.12%2C1%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold594 SAMTools SNP 247058 247058 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C88%2C54%3BMQ%3D50%3BFQ%3D141%3BPV4%3D2.8e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold594 SAMTools SNP 247067 247067 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C53%2C58%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D2e-10%2C0.093%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold594 SAMTools SNP 247085 247085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold594 SAMTools SNP 247169 247169 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C57%2C105%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.2e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 251470 251470 99.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold594 SAMTools SNP 253531 253531 170 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C42%2C0:81 scaffold594 SAMTools SNP 260787 260787 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.00016%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C181:99 scaffold594 SAMTools SNP 261349 261349 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 263245 263245 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold594 SAMTools SNP 263255 263255 98.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold594 SAMTools SNP 263386 263386 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 263399 263399 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 272929 272929 84.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C21%2C0:39 scaffold594 SAMTools SNP 272961 272961 54.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C21%2C0:39 scaffold594 SAMTools SNP 275252 275252 60.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.21%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C2%2C0:5 scaffold594 SAMTools SNP 281385 281385 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.34%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold594 SAMTools SNP 281400 281400 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold594 SAMTools SNP 281680 281680 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C27%2C7%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.017%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold594 SAMTools SNP 282753 282753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold594 SAMTools SNP 282963 282963 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0325%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C2.2e-10%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C174:34 scaffold594 SAMTools SNP 283029 283029 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold594 SAMTools SNP 284105 284105 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold594 SAMTools SNP 287354 287354 208 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C14:63 scaffold594 SAMTools SNP 287404 287404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C15%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.22%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold594 SAMTools SNP 289238 289238 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 289421 289421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 289458 289458 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 292185 292185 155 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold594 SAMTools SNP 292193 292193 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C18%2C0:33 scaffold594 SAMTools SNP 292268 292268 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C186:48 scaffold594 SAMTools SNP 292550 292550 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 292711 292711 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C218:99 scaffold594 SAMTools SNP 292720 292720 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.36%2C0.11%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C244:99 scaffold594 SAMTools SNP 293541 293541 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold594 SAMTools SNP 294447 294447 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 294525 294525 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 295179 295179 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 299502 299502 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 303176 303176 34.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C188%2C188%2C0%2C172:33 scaffold594 SAMTools SNP 303194 303194 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold594 SAMTools SNP 303212 303212 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold594 SAMTools SNP 303281 303281 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.5%2C4.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold594 SAMTools SNP 303867 303867 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold594 SAMTools SNP 310524 310524 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold594 SAMTools SNP 310557 310557 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold594 SAMTools SNP 311219 311219 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold594 SAMTools SNP 313937 313937 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold594 SAMTools SNP 318783 318783 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold594 SAMTools SNP 320730 320730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold594 SAMTools SNP 320928 320928 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold594 SAMTools SNP 320958 320958 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold594 SAMTools SNP 320964 320964 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 321009 321009 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold594 SAMTools SNP 321621 321621 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold594 SAMTools SNP 323015 323015 222 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D48%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0%2C244%2C0%2C241:57 scaffold594 SAMTools SNP 323026 323026 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold594 SAMTools SNP 323122 323122 22.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold594 SAMTools SNP 323846 323846 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 323873 323873 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold594 SAMTools SNP 324778 324778 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold594 SAMTools SNP 325125 325125 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold594 SAMTools SNP 325131 325131 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold594 SAMTools SNP 325601 325601 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold594 SAMTools SNP 325700 325700 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 325847 325847 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold594 SAMTools SNP 325901 325901 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C235:99 scaffold594 SAMTools SNP 326758 326758 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.51%2C0.0049%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold594 SAMTools SNP 326760 326760 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.043%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C216:59 scaffold594 SAMTools SNP 326761 326761 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C159:99 scaffold594 SAMTools SNP 326804 326804 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C57%2C0:99 scaffold594 SAMTools SNP 326873 326873 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold594 SAMTools SNP 327347 327347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold594 SAMTools SNP 327945 327945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold594 SAMTools SNP 328170 328170 91.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C12%2C0:21 scaffold594 SAMTools SNP 335684 335684 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold594 SAMTools SNP 335858 335858 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C12%2C35%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.024%2C4.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold594 SAMTools SNP 335912 335912 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold594 SAMTools SNP 335942 335942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold594 SAMTools SNP 337009 337009 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold594 SAMTools SNP 337099 337099 19 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold594 SAMTools SNP 347155 347155 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold594 SAMTools SNP 352586 352586 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 360631 360631 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold594 SAMTools SNP 361920 361920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 363299 363299 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C218:99 scaffold594 SAMTools SNP 363773 363773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold594 SAMTools SNP 363787 363787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C5%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold594 SAMTools SNP 364981 364981 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold594 SAMTools SNP 364984 364984 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold594 SAMTools SNP 365047 365047 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C30%2C0:57 scaffold594 SAMTools SNP 367593 367593 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold594 SAMTools SNP 367680 367680 45.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold594 SAMTools SNP 367708 367708 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold594 SAMTools SNP 367719 367719 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C219:99 scaffold594 SAMTools SNP 367746 367746 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.038%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold594 SAMTools SNP 368356 368356 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C3%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.017%2C0.00025%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold594 SAMTools SNP 368359 368359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C33%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold594 SAMTools SNP 368395 368395 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.029%2C0.17%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold594 SAMTools SNP 369024 369024 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold594 SAMTools SNP 369063 369063 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.64%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold594 SAMTools SNP 369078 369078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C28%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 370532 370532 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C2%2C59%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.5%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 371252 371252 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C13%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C128:99 scaffold594 SAMTools SNP 372014 372014 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.22%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold594 SAMTools SNP 373019 373019 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold594 SAMTools SNP 373073 373073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold594 SAMTools SNP 375244 375244 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C15%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold594 SAMTools SNP 375262 375262 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0012%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold594 SAMTools SNP 375304 375304 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.00065%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold594 SAMTools SNP 384752 384752 11.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold594 SAMTools SNP 385522 385522 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold594 SAMTools SNP 386066 386066 35.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold594 SAMTools SNP 386129 386129 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold594 SAMTools SNP 386639 386639 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold594 SAMTools SNP 386672 386672 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C126:99 scaffold594 SAMTools SNP 390725 390725 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold594 SAMTools SNP 390765 390765 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0043%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold594 SAMTools SNP 391151 391151 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C12%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 392774 392774 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold594 SAMTools SNP 398435 398435 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 398492 398492 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C5%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.49%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 402274 402274 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.026%2C3.2e-06%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold594 SAMTools SNP 402312 402312 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C1%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.39%2C0.39%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold594 SAMTools SNP 402362 402362 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 404511 404511 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C52%2C8%3BMQ%3D50%3BFQ%3D-119%3BPV4%3D1%2C4.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C92%2C0:99 scaffold594 SAMTools SNP 405035 405035 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C25%2C108%2C17%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1.5e-05%2C4e-134%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold594 SAMTools SNP 405330 405330 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold594 SAMTools SNP 405522 405522 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D81%2C1%2C42%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C4.6e-94%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold594 SAMTools SNP 405798 405798 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C24%2C10%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.77%2C3.4e-32%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold594 SAMTools SNP 405906 405906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C11%2C36%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C2e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 406143 406143 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C121%2C59%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C7.7e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold594 SAMTools SNP 406729 406729 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C45%2C33%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1.5e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 407289 407289 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C19%2C19%2C18%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.66%2C7.8e-69%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold594 SAMTools SNP 407385 407385 11.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold594 SAMTools SNP 407435 407435 62.3 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C16%2C1%2C88%2C0%2C85:27 scaffold594 SAMTools SNP 430735 430735 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold594 SAMTools SNP 430789 430789 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold594 SAMTools SNP 430813 430813 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0026%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold594 SAMTools SNP 443328 443328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 443468 443468 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 448565 448565 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 448615 448615 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold594 SAMTools SNP 449155 449155 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C27%2C0:51 scaffold594 SAMTools SNP 449264 449264 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C45%2C0:87 scaffold594 SAMTools SNP 449338 449338 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.38%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold594 SAMTools SNP 449437 449437 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.5e-08%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold594 SAMTools SNP 449703 449703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C35%2C5%2C32%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold594 SAMTools SNP 450043 450043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C33%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold594 SAMTools SNP 450051 450051 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C4%2C7%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0033%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold594 SAMTools SNP 450360 450360 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.39%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C231:99 scaffold594 SAMTools SNP 450370 450370 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold594 SAMTools SNP 453885 453885 9.31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold594 SAMTools SNP 456347 456347 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold594 SAMTools SNP 456977 456977 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.02%2C1%2C1%2C2.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold595 SAMTools SNP 3393 3393 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold595 SAMTools SNP 3492 3492 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold595 SAMTools SNP 3528 3528 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold595 SAMTools SNP 49703 49703 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold595 SAMTools SNP 50095 50095 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold595 SAMTools SNP 51275 51275 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold595 SAMTools SNP 73641 73641 13.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold596 SAMTools SNP 2184 2184 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold596 SAMTools SNP 2312 2312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold596 SAMTools SNP 2330 2330 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold596 SAMTools SNP 15763 15763 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold596 SAMTools SNP 19905 19905 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold596 SAMTools SNP 20298 20298 51.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold596 SAMTools SNP 21035 21035 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 21356 21356 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold596 SAMTools SNP 21531 21531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold596 SAMTools SNP 21541 21541 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.066%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold596 SAMTools SNP 22017 22017 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 22036 22036 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold596 SAMTools SNP 22041 22041 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 23970 23970 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold596 SAMTools SNP 36443 36443 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C158:99 scaffold596 SAMTools SNP 37545 37545 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold596 SAMTools SNP 37689 37689 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold596 SAMTools SNP 38239 38239 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold596 SAMTools SNP 38247 38247 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold596 SAMTools SNP 38667 38667 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold596 SAMTools SNP 38757 38757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold596 SAMTools SNP 39584 39584 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold596 SAMTools SNP 39593 39593 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold596 SAMTools SNP 39763 39763 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C76:79 scaffold596 SAMTools SNP 39823 39823 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold596 SAMTools SNP 39912 39912 14.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold596 SAMTools SNP 40063 40063 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold596 SAMTools SNP 41614 41614 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold596 SAMTools SNP 41755 41755 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.51%2C1.7e-19%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C174:78 scaffold596 SAMTools SNP 41930 41930 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C27%2C0:46 scaffold596 SAMTools SNP 41968 41968 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 42510 42510 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold596 SAMTools SNP 42537 42537 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C16%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.14%2C5.7e-40%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold596 SAMTools SNP 42741 42741 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C6%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.25%2C2.7e-20%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold596 SAMTools SNP 43224 43224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.094%2C2.6e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 44029 44029 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1.7e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C156:91 scaffold596 SAMTools SNP 44837 44837 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C75%2C0:99 scaffold596 SAMTools SNP 62465 62465 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold596 SAMTools SNP 69238 69238 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold596 SAMTools SNP 70271 70271 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0104%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold596 SAMTools SNP 70295 70295 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 71233 71233 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.28%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold596 SAMTools SNP 71262 71262 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0:51 scaffold596 SAMTools SNP 71313 71313 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold596 SAMTools SNP 71388 71388 154 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.021%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C237:99 scaffold596 SAMTools SNP 74255 74255 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold596 SAMTools SNP 74290 74290 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C221:99 scaffold596 SAMTools SNP 78970 78970 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C2%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.68%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold596 SAMTools SNP 78994 78994 167 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C2%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.69%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold596 SAMTools SNP 79029 79029 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.28%2C1%2C1%2C4.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold596 SAMTools SNP 79033 79033 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold596 SAMTools SNP 79048 79048 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C10%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C167:99 scaffold596 SAMTools SNP 79970 79970 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold596 SAMTools SNP 80015 80015 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.33%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C249:99 scaffold596 SAMTools SNP 80460 80460 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold596 SAMTools SNP 80487 80487 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.055%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold596 SAMTools SNP 81248 81248 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D48%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C226:88 scaffold596 SAMTools SNP 81252 81252 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C0.026%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold596 SAMTools SNP 81284 81284 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold596 SAMTools SNP 81929 81929 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold596 SAMTools SNP 81955 81955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold596 SAMTools SNP 82562 82562 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 83179 83179 80.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold596 SAMTools SNP 83573 83573 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D51.6%3BPV4%3D1%2C0.00059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C79:82 scaffold596 SAMTools SNP 83606 83606 141 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C51%2C0:99 scaffold596 SAMTools SNP 83787 83787 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C17:20 scaffold596 SAMTools SNP 83795 83795 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold596 SAMTools SNP 84035 84035 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold596 SAMTools SNP 84545 84545 86 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold596 SAMTools SNP 85344 85344 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.33%2C1%2C0.2%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 85998 85998 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold596 SAMTools SNP 86093 86093 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C33%2C0:63 scaffold596 SAMTools SNP 86131 86131 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold596 SAMTools SNP 86355 86355 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C42%2C0:80 scaffold596 SAMTools SNP 86457 86457 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C105%2C0:99 scaffold596 SAMTools SNP 115766 115766 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold596 SAMTools SNP 116446 116446 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold596 SAMTools SNP 116475 116475 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C10%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.64%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold596 SAMTools SNP 116907 116907 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C12%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 117138 117138 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.037%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 117651 117651 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C28%2C0%2C19%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold596 SAMTools SNP 117781 117781 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C47%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold596 SAMTools SNP 117832 117832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold596 SAMTools SNP 118039 118039 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C28%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold596 SAMTools SNP 118087 118087 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold596 SAMTools SNP 118114 118114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 118229 118229 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C23%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 118245 118245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.069%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 118409 118409 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold596 SAMTools SNP 118743 118743 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold596 SAMTools SNP 118801 118801 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold596 SAMTools SNP 119076 119076 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold596 SAMTools SNP 119373 119373 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.56%2C8.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold596 SAMTools SNP 119403 119403 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold596 SAMTools SNP 119523 119523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold596 SAMTools SNP 119526 119526 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C190:99 scaffold596 SAMTools SNP 119529 119529 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C204:99 scaffold596 SAMTools SNP 122533 122533 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C1%2C8%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold596 SAMTools SNP 122572 122572 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.072%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold596 SAMTools SNP 122587 122587 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold596 SAMTools SNP 123133 123133 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold596 SAMTools SNP 123465 123465 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold596 SAMTools SNP 123483 123483 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C30%2C0:57 scaffold596 SAMTools SNP 123531 123531 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 123579 123579 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold596 SAMTools SNP 123901 123901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C3%2C47%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 123925 123925 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C23%2C60%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 124303 124303 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C59%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 124417 124417 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold596 SAMTools SNP 124888 124888 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.033%2C0.00031%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C215:31 scaffold596 SAMTools SNP 124991 124991 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold596 SAMTools SNP 126089 126089 64.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C12%2C0:21 scaffold596 SAMTools SNP 126615 126615 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 126982 126982 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.23%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold596 SAMTools SNP 127067 127067 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 127515 127515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 127878 127878 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C4%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.012%2C0.49%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold596 SAMTools SNP 127914 127914 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold596 SAMTools SNP 130293 130293 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold596 SAMTools SNP 130313 130313 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold596 SAMTools SNP 130328 130328 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold596 SAMTools SNP 130370 130370 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold596 SAMTools SNP 130424 130424 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold596 SAMTools SNP 132507 132507 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold596 SAMTools SNP 132558 132558 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C15%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0093%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold596 SAMTools SNP 132801 132801 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 133194 133194 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C8%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.044%2C0.099%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold596 SAMTools SNP 133199 133199 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C7%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.045%2C0.0013%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold596 SAMTools SNP 133229 133229 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold596 SAMTools SNP 133244 133244 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold596 SAMTools SNP 133505 133505 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C8%2C36%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 133526 133526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C8%2C53%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 133955 133955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C16%2C30%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 135444 135444 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C4%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 135616 135616 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C138:69 scaffold596 SAMTools SNP 135652 135652 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C118:99 scaffold596 SAMTools SNP 135685 135685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold596 SAMTools SNP 135922 135922 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold596 SAMTools SNP 136127 136127 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C11%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold596 SAMTools SNP 136320 136320 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C0%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D4.5e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold596 SAMTools SNP 136655 136655 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0023%2C1%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold596 SAMTools SNP 136673 136673 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.55%2C0.0062%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold596 SAMTools SNP 137330 137330 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold596 SAMTools SNP 137401 137401 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C28%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold596 SAMTools SNP 138279 138279 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.27%2C3.4e-06%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold596 SAMTools SNP 138375 138375 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 138854 138854 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold596 SAMTools SNP 139726 139726 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C71%2C2%2C18%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.73%2C5.2e-05%2C1%2C8.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold596 SAMTools SNP 139744 139744 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C74%2C0%2C21%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.21%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold596 SAMTools SNP 141550 141550 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C37%2C77%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 142465 142465 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C78%2C33%2C47%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.56%2C6.5e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold596 SAMTools SNP 142512 142512 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C18%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.00081%2C2.9e-08%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold596 SAMTools SNP 142944 142944 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.089%2C4e-11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold596 SAMTools SNP 142988 142988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.081%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 148332 148332 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold596 SAMTools SNP 148841 148841 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold596 SAMTools SNP 148844 148844 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold596 SAMTools SNP 149029 149029 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.074%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold596 SAMTools SNP 149038 149038 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold596 SAMTools SNP 149075 149075 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C15%2C0:27 scaffold596 SAMTools SNP 149095 149095 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold596 SAMTools SNP 149662 149662 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold596 SAMTools SNP 149695 149695 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold596 SAMTools SNP 151912 151912 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 152514 152514 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold596 SAMTools SNP 152531 152531 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold596 SAMTools SNP 153246 153246 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C72%2C0:99 scaffold596 SAMTools SNP 153786 153786 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 154175 154175 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C0%2C38%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.0054%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold596 SAMTools SNP 154388 154388 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold596 SAMTools SNP 154478 154478 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.3%2C7.1e-12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold596 SAMTools SNP 154533 154533 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold596 SAMTools SNP 154566 154566 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.015%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold596 SAMTools SNP 154981 154981 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.68%2C1.1e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold596 SAMTools SNP 156048 156048 98.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C21%2C0:39 scaffold596 SAMTools SNP 157393 157393 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold596 SAMTools SNP 157771 157771 220 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C215%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C255%2C0%2C243%2C255%2C240:99 scaffold596 SAMTools SNP 158482 158482 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C28%2C3%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold596 SAMTools SNP 159093 159093 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.057%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold596 SAMTools SNP 159239 159239 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C53%2C9%3BMQ%3D50%3BFQ%3D-174%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C147%2C0:99 scaffold596 SAMTools SNP 161633 161633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C38%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 161705 161705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold596 SAMTools SNP 161717 161717 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C23%2C13%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 163046 163046 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C5%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.09%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold596 SAMTools SNP 163166 163166 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C5%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C219%2C50:99 scaffold596 SAMTools SNP 163667 163667 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C37%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold596 SAMTools SNP 164056 164056 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C11%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold596 SAMTools SNP 164383 164383 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold596 SAMTools SNP 164404 164404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold596 SAMTools SNP 164966 164966 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C23%2C46%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 165101 165101 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C154%2C66%2C152%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C5.8e-24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 165430 165430 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C189%2C39%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 165478 165478 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C105%2C1%2C16%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.69%2C1%2C1%2C3.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold596 SAMTools SNP 165574 165574 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C18%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C132%2C0:99 scaffold596 SAMTools SNP 165595 165595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C18%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold596 SAMTools SNP 165979 165979 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C65%2C7%2C104%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.57%2C2.7e-83%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold596 SAMTools SNP 166289 166289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C8%2C101%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.19%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold596 SAMTools SNP 173784 173784 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold596 SAMTools SNP 174172 174172 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold596 SAMTools SNP 185971 185971 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold596 SAMTools SNP 185986 185986 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold596 SAMTools SNP 217667 217667 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C33%2C0:63 scaffold596 SAMTools SNP 219206 219206 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold596 SAMTools SNP 220290 220290 51.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold596 SAMTools SNP 226906 226906 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold596 SAMTools SNP 226929 226929 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C150:99 scaffold596 SAMTools SNP 227390 227390 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold596 SAMTools SNP 230630 230630 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold596 SAMTools SNP 230638 230638 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold597 SAMTools SNP 1537 1537 12 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold597 SAMTools SNP 3505 3505 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C28%2C0%3BMQ%3D17%3BFQ%3D22%3BPV4%3D1%2C1%2C0.46%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C49:52 scaffold597 SAMTools SNP 3730 3730 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold597 SAMTools SNP 4002 4002 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C57%3BMQ%3D19%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C172%2C0:99 scaffold597 SAMTools SNP 4501 4501 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold597 SAMTools SNP 6812 6812 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C225:99 scaffold597 SAMTools SNP 6832 6832 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C216:99 scaffold597 SAMTools SNP 6874 6874 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold597 SAMTools SNP 7167 7167 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold597 SAMTools SNP 7367 7367 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C42%2C0:81 scaffold597 SAMTools SNP 22174 22174 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold597 SAMTools SNP 30314 30314 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold597 SAMTools SNP 33839 33839 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold597 SAMTools SNP 40127 40127 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 40446 40446 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold597 SAMTools SNP 40460 40460 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold597 SAMTools SNP 51717 51717 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold597 SAMTools SNP 51977 51977 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold597 SAMTools SNP 51978 51978 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 52606 52606 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold597 SAMTools SNP 52654 52654 191 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C149:99 scaffold597 SAMTools SNP 56765 56765 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 57214 57214 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 57220 57220 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 65054 65054 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold597 SAMTools SNP 68742 68742 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold597 SAMTools SNP 68820 68820 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold597 SAMTools SNP 69451 69451 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.26%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C29:32 scaffold597 SAMTools SNP 69944 69944 88 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold597 SAMTools SNP 70001 70001 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold597 SAMTools SNP 70040 70040 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold597 SAMTools SNP 70049 70049 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold597 SAMTools SNP 70440 70440 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold597 SAMTools SNP 70485 70485 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C10%2C6%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.035%2C4.1e-05%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C127:99 scaffold597 SAMTools SNP 70605 70605 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold597 SAMTools SNP 73545 73545 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold597 SAMTools SNP 74680 74680 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold597 SAMTools SNP 74695 74695 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 74815 74815 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold597 SAMTools SNP 75971 75971 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.3%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C196:99 scaffold597 SAMTools SNP 82612 82612 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold597 SAMTools SNP 83098 83098 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold597 SAMTools SNP 83146 83146 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C149%2C113:69 scaffold597 SAMTools SNP 83164 83164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold597 SAMTools SNP 83716 83716 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold597 SAMTools SNP 84257 84257 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold597 SAMTools SNP 84859 84859 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold597 SAMTools SNP 84877 84877 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold597 SAMTools SNP 84967 84967 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold597 SAMTools SNP 87762 87762 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold597 SAMTools SNP 87768 87768 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold597 SAMTools SNP 88602 88602 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C0.35%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold597 SAMTools SNP 88620 88620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold597 SAMTools SNP 88665 88665 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C42%2C0:81 scaffold597 SAMTools SNP 88686 88686 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold597 SAMTools SNP 89103 89103 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C113:49 scaffold597 SAMTools SNP 89153 89153 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.45%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C103:37 scaffold599 SAMTools SNP 48384 48384 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold599 SAMTools SNP 48681 48681 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold599 SAMTools SNP 48784 48784 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.054%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold599 SAMTools SNP 49526 49526 59.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold599 SAMTools SNP 50012 50012 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold599 SAMTools SNP 50051 50051 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold599 SAMTools SNP 50082 50082 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C0.14%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold599 SAMTools SNP 50096 50096 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold599 SAMTools SNP 50452 50452 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold599 SAMTools SNP 50473 50473 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold599 SAMTools SNP 50966 50966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 50973 50973 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 51043 51043 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 51058 51058 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold599 SAMTools SNP 51060 51060 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold599 SAMTools SNP 51455 51455 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C32:35 scaffold599 SAMTools SNP 51539 51539 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold599 SAMTools SNP 52169 52169 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold599 SAMTools SNP 52187 52187 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 62167 62167 26.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C18%2C0:32 scaffold599 SAMTools SNP 81784 81784 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold599 SAMTools SNP 108974 108974 17.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold599 SAMTools SNP 214168 214168 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold599 SAMTools SNP 241694 241694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold599 SAMTools SNP 243367 243367 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C221:39 scaffold599 SAMTools SNP 243725 243725 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C42%2C22%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-09%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 243798 243798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D263%2C45%2C131%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00058%2C4.1e-82%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 243877 243877 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1626%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D959%2C313%2C351%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D5.6e-38%2C6.1e-118%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold599 SAMTools SNP 244939 244939 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D233%2C104%2C143%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 245514 245514 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 247793 247793 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D506%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D246%2C31%2C186%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 249882 249882 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold599 SAMTools SNP 251128 251128 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold599 SAMTools SNP 257405 257405 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold599 SAMTools SNP 260889 260889 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold599 SAMTools SNP 261678 261678 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.34%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C244:76 scaffold599 SAMTools SNP 267238 267238 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold599 SAMTools SNP 267361 267361 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 268589 268589 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold599 SAMTools SNP 268655 268655 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold599 SAMTools SNP 272565 272565 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold599 SAMTools SNP 272886 272886 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C33%2C0:63 scaffold599 SAMTools SNP 275660 275660 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold599 SAMTools SNP 279734 279734 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 285859 285859 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C6.1e-14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold599 SAMTools SNP 290733 290733 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.6e-09%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold599 SAMTools SNP 291066 291066 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1.6e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C146:96 scaffold599 SAMTools SNP 291084 291084 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.6e-14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 292426 292426 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C247:99 scaffold599 SAMTools SNP 296488 296488 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold599 SAMTools SNP 306895 306895 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 307045 307045 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C14%3BMQ%3D38%3BFQ%3D110%3BPV4%3D0.42%2C0.18%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C137:99 scaffold599 SAMTools SNP 340310 340310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 350447 350447 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 359202 359202 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 359239 359239 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C439%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold599 SAMTools SNP 359471 359471 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C91%2C128%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-24%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 359630 359630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C38%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold599 SAMTools SNP 360412 360412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C30%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold599 SAMTools SNP 369562 369562 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 369598 369598 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 373089 373089 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.43%2C0.022%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C231:99 scaffold599 SAMTools SNP 373541 373541 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 373583 373583 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold599 SAMTools SNP 373643 373643 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold599 SAMTools SNP 373670 373670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold599 SAMTools SNP 374214 374214 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 374299 374299 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 374969 374969 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 376512 376512 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold599 SAMTools SNP 376548 376548 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold599 SAMTools SNP 376598 376598 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold599 SAMTools SNP 376599 376599 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold599 SAMTools SNP 377182 377182 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold599 SAMTools SNP 378420 378420 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold599 SAMTools SNP 378934 378934 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.31%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C227:99 scaffold599 SAMTools SNP 378955 378955 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold599 SAMTools SNP 378967 378967 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.54%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold599 SAMTools SNP 379998 379998 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold599 SAMTools SNP 380019 380019 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold599 SAMTools SNP 381741 381741 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold599 SAMTools SNP 381759 381759 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold599 SAMTools SNP 391758 391758 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C15:18 scaffold599 SAMTools SNP 398867 398867 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 400289 400289 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C51%2C0:99 scaffold599 SAMTools SNP 400503 400503 73 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold599 SAMTools SNP 401246 401246 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 402793 402793 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold599 SAMTools SNP 403067 403067 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.037%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold599 SAMTools SNP 406628 406628 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold599 SAMTools SNP 407080 407080 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold599 SAMTools SNP 419662 419662 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C39%2C0:75 scaffold599 SAMTools SNP 419821 419821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C39%3BMQ%3D50%3BFQ%3D-136%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C109%2C0:99 scaffold599 SAMTools SNP 431931 431931 52.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold599 SAMTools SNP 441272 441272 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C8%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold599 SAMTools SNP 441386 441386 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C69%2C0:99 scaffold599 SAMTools SNP 441436 441436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 441481 441481 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold599 SAMTools SNP 441835 441835 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold599 SAMTools SNP 444499 444499 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.3%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold599 SAMTools SNP 447353 447353 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold599 SAMTools SNP 447515 447515 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold599 SAMTools SNP 447518 447518 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold599 SAMTools SNP 448415 448415 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.084%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold599 SAMTools SNP 448478 448478 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold599 SAMTools SNP 448568 448568 165 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C0%2C15%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C0.3%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold599 SAMTools SNP 449738 449738 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold599 SAMTools SNP 449753 449753 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23:45 scaffold599 SAMTools SNP 449771 449771 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.2%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C19:22 scaffold599 SAMTools SNP 450305 450305 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold599 SAMTools SNP 450797 450797 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C16%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.25%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C39:42 scaffold599 SAMTools SNP 450813 450813 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold599 SAMTools SNP 450819 450819 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold599 SAMTools SNP 453396 453396 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold599 SAMTools SNP 453416 453416 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C225:99 scaffold599 SAMTools SNP 454491 454491 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C152:99 scaffold599 SAMTools SNP 454563 454563 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold599 SAMTools SNP 455183 455183 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold599 SAMTools SNP 457123 457123 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.087%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold599 SAMTools SNP 457632 457632 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 457644 457644 224 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold599 SAMTools SNP 457674 457674 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold599 SAMTools SNP 457946 457946 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 462189 462189 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 462595 462595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold599 SAMTools SNP 463158 463158 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C4%3BMQ%3D48%3BFQ%3D33%3BPV4%3D0.45%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold599 SAMTools SNP 463236 463236 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold599 SAMTools SNP 463239 463239 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold599 SAMTools SNP 463930 463930 14.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold599 SAMTools SNP 464602 464602 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold599 SAMTools SNP 471574 471574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 473642 473642 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D41%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C36%2C0:69 scaffold599 SAMTools SNP 475033 475033 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.27%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C134:99 scaffold599 SAMTools SNP 475057 475057 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 475343 475343 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold599 SAMTools SNP 475366 475366 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold599 SAMTools SNP 483610 483610 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold599 SAMTools SNP 484135 484135 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold599 SAMTools SNP 489034 489034 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold599 SAMTools SNP 491737 491737 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold599 SAMTools SNP 491771 491771 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold599 SAMTools SNP 493816 493816 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold599 SAMTools SNP 493822 493822 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold599 SAMTools SNP 494066 494066 55.8 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold599 SAMTools SNP 494098 494098 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 495001 495001 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 495020 495020 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 495226 495226 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 497767 497767 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.001%2C3.4e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold599 SAMTools SNP 497830 497830 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C13%2C5%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.2%2C0.16%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold599 SAMTools SNP 497831 497831 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.2%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold599 SAMTools SNP 499015 499015 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.022%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold599 SAMTools SNP 499065 499065 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold599 SAMTools SNP 499468 499468 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 500586 500586 88 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold599 SAMTools SNP 500668 500668 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 500672 500672 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold599 SAMTools SNP 502235 502235 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold599 SAMTools SNP 502587 502587 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold599 SAMTools SNP 502942 502942 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold599 SAMTools SNP 503581 503581 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.036%2C8.2e-15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold599 SAMTools SNP 503653 503653 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold599 SAMTools SNP 503675 503675 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold599 SAMTools SNP 503842 503842 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0037%2C0.071%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold599 SAMTools SNP 504189 504189 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold599 SAMTools SNP 504273 504273 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C15%2C0:27 scaffold599 SAMTools SNP 504315 504315 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold599 SAMTools SNP 504950 504950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0078%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 505362 505362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold599 SAMTools SNP 505425 505425 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C171:99 scaffold599 SAMTools SNP 505614 505614 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold599 SAMTools SNP 508566 508566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 508618 508618 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold599 SAMTools SNP 509875 509875 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.35%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold599 SAMTools SNP 511419 511419 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold599 SAMTools SNP 511587 511587 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.052%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold599 SAMTools SNP 512117 512117 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.18%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold599 SAMTools SNP 514555 514555 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.64%2C1.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold599 SAMTools SNP 518573 518573 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C1%2C35%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.21%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold599 SAMTools SNP 518596 518596 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C6%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold599 SAMTools SNP 519971 519971 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold599 SAMTools SNP 520383 520383 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C186:99 scaffold599 SAMTools SNP 520385 520385 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold599 SAMTools SNP 520399 520399 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold599 SAMTools SNP 521657 521657 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold599 SAMTools SNP 521893 521893 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold599 SAMTools SNP 527417 527417 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold599 SAMTools SNP 527734 527734 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold599 SAMTools SNP 528017 528017 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold599 SAMTools SNP 528759 528759 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold599 SAMTools SNP 532311 532311 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold599 SAMTools SNP 542587 542587 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold599 SAMTools SNP 557983 557983 42.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold599 SAMTools SNP 558034 558034 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 558064 558064 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold599 SAMTools SNP 561296 561296 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold599 SAMTools SNP 561871 561871 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold599 SAMTools SNP 564671 564671 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold599 SAMTools SNP 575927 575927 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold599 SAMTools SNP 575990 575990 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold599 SAMTools SNP 576566 576566 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold599 SAMTools SNP 576776 576776 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C24%2C0:45 scaffold599 SAMTools SNP 578282 578282 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.46%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold599 SAMTools SNP 578493 578493 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold599 SAMTools SNP 578499 578499 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold599 SAMTools SNP 579033 579033 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold599 SAMTools SNP 579564 579564 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold599 SAMTools SNP 580867 580867 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C18%2C0:33 scaffold599 SAMTools SNP 581273 581273 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold599 SAMTools SNP 581417 581417 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold599 SAMTools SNP 581833 581833 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold599 SAMTools SNP 582425 582425 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold599 SAMTools SNP 583191 583191 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C33%2C0:62 scaffold599 SAMTools SNP 583467 583467 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold599 SAMTools SNP 583520 583520 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold599 SAMTools SNP 583579 583579 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.17%2C6.5e-21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C229:49 scaffold599 SAMTools SNP 584342 584342 79.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C12%2C0:21 scaffold599 SAMTools SNP 584411 584411 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0019%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C155:36 scaffold599 SAMTools SNP 584564 584564 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C9%2C0:16 scaffold599 SAMTools SNP 584885 584885 133 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold599 SAMTools SNP 584918 584918 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C210:99 scaffold599 SAMTools SNP 585325 585325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold599 SAMTools SNP 585479 585479 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold599 SAMTools SNP 585495 585495 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold599 SAMTools SNP 585496 585496 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold599 SAMTools SNP 587635 587635 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 587644 587644 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 589430 589430 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold599 SAMTools SNP 589436 589436 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold599 SAMTools SNP 590555 590555 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold599 SAMTools SNP 592251 592251 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 625007 625007 6.17 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold599 SAMTools SNP 625179 625179 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold599 SAMTools SNP 625230 625230 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold599 SAMTools SNP 628321 628321 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C148:54 scaffold599 SAMTools SNP 628358 628358 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold599 SAMTools SNP 631910 631910 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.18%2C0.11%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold599 SAMTools SNP 692891 692891 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold599 SAMTools SNP 705842 705842 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold6 SAMTools SNP 24170 24170 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 64364 64364 122 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C30%2C0%2C150%2C15%2C147:57 scaffold6 SAMTools SNP 65774 65774 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold6 SAMTools SNP 94384 94384 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold6 SAMTools SNP 95545 95545 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 95590 95590 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold6 SAMTools SNP 105625 105625 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold6 SAMTools SNP 105931 105931 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold6 SAMTools SNP 106152 106152 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold6 SAMTools SNP 106424 106424 7.59 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold6 SAMTools SNP 107042 107042 9.08 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold6 SAMTools SNP 129072 129072 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold6 SAMTools SNP 129194 129194 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold6 SAMTools SNP 130774 130774 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold6 SAMTools SNP 131491 131491 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold6 SAMTools SNP 131531 131531 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold6 SAMTools SNP 135269 135269 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D37.9%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C82:68 scaffold6 SAMTools SNP 136079 136079 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold6 SAMTools SNP 136095 136095 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C152:77 scaffold6 SAMTools SNP 136125 136125 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 136364 136364 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 136988 136988 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C1%3BMQ%3D47%3BFQ%3D89%3BPV4%3D0.4%2C1%2C0.12%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C174:99 scaffold6 SAMTools SNP 136995 136995 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D47%3BFQ%3D89%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C116:99 scaffold6 SAMTools SNP 139741 139741 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D47%3BFQ%3D46%3BPV4%3D0.37%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C73:76 scaffold6 SAMTools SNP 140253 140253 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold6 SAMTools SNP 140329 140329 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold6 SAMTools SNP 151978 151978 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C7%2C5%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0012%2C0.0095%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C233:99 scaffold6 SAMTools SNP 152678 152678 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C107:73 scaffold6 SAMTools SNP 153277 153277 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold6 SAMTools SNP 154826 154826 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold6 SAMTools SNP 156085 156085 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C18%2C1%3BMQ%3D46%3BFQ%3D212%3BPV4%3D0.34%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C239:99 scaffold6 SAMTools SNP 156328 156328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C27%3BMQ%3D46%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold6 SAMTools SNP 157542 157542 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.12%2C0.5%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C235:99 scaffold6 SAMTools SNP 157595 157595 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 157820 157820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold6 SAMTools SNP 158044 158044 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold6 SAMTools SNP 158290 158290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 158291 158291 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 159584 159584 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold6 SAMTools SNP 159622 159622 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold6 SAMTools SNP 170799 170799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 170820 170820 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold6 SAMTools SNP 174959 174959 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 174984 174984 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 214436 214436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 215097 215097 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 215182 215182 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 215185 215185 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold6 SAMTools SNP 215666 215666 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold6 SAMTools SNP 215733 215733 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold6 SAMTools SNP 216368 216368 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 216376 216376 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 216926 216926 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 217350 217350 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 218470 218470 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold6 SAMTools SNP 218959 218959 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold6 SAMTools SNP 239435 239435 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold6 SAMTools SNP 243683 243683 34.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold6 SAMTools SNP 243937 243937 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C30%2C0:57 scaffold6 SAMTools SNP 243947 243947 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C27%2C0:51 scaffold6 SAMTools SNP 244079 244079 29.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C0:33 scaffold6 SAMTools SNP 249164 249164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C20%2C49%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 254342 254342 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C26%2C21%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 254821 254821 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C31%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.0053%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C183:99 scaffold6 SAMTools SNP 256046 256046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold6 SAMTools SNP 256578 256578 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C8%2C2%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.023%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold6 SAMTools SNP 256599 256599 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold6 SAMTools SNP 258230 258230 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C42%2C5%2C24%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.3%2C1.1e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold6 SAMTools SNP 258280 258280 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold6 SAMTools SNP 271973 271973 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C24%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 272015 272015 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0072%2C0.017%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold6 SAMTools SNP 272065 272065 187 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold6 SAMTools SNP 272108 272108 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C21%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 272747 272747 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.058%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold6 SAMTools SNP 274280 274280 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold6 SAMTools SNP 282714 282714 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold6 SAMTools SNP 282750 282750 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.26%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold6 SAMTools SNP 283003 283003 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold6 SAMTools SNP 283510 283510 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C26%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold6 SAMTools SNP 286699 286699 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C121%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold6 SAMTools SNP 287141 287141 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C0%2C19%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold6 SAMTools SNP 287144 287144 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C0%2C19%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.57%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold6 SAMTools SNP 287171 287171 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C3%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 287465 287465 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 287770 287770 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C4%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold6 SAMTools SNP 287791 287791 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C19%2C31%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 288191 288191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C24%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 288209 288209 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C66%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 290769 290769 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold6 SAMTools SNP 293177 293177 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C0%2C17%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.28%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold6 SAMTools SNP 293819 293819 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.19%2C1.2e-11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold6 SAMTools SNP 295243 295243 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold6 SAMTools SNP 296202 296202 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold6 SAMTools SNP 296460 296460 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.49%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold6 SAMTools SNP 296999 296999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold6 SAMTools SNP 297807 297807 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C1.4e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold6 SAMTools SNP 298219 298219 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 298222 298222 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 298276 298276 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold6 SAMTools SNP 303576 303576 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold6 SAMTools SNP 303606 303606 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 308625 308625 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold6 SAMTools SNP 308703 308703 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C15%2C0:27 scaffold6 SAMTools SNP 308715 308715 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold6 SAMTools SNP 308904 308904 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold6 SAMTools SNP 308988 308988 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold6 SAMTools SNP 309000 309000 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold6 SAMTools SNP 309426 309426 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold6 SAMTools SNP 310024 310024 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold6 SAMTools SNP 310063 310063 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 310123 310123 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 310522 310522 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold6 SAMTools SNP 310583 310583 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold6 SAMTools SNP 310814 310814 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 310817 310817 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 311035 311035 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 311247 311247 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 311320 311320 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 311605 311605 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold6 SAMTools SNP 311635 311635 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0032%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold6 SAMTools SNP 312026 312026 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold6 SAMTools SNP 312040 312040 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 312259 312259 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold6 SAMTools SNP 312287 312287 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold6 SAMTools SNP 312896 312896 92.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold6 SAMTools SNP 312923 312923 92.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold6 SAMTools SNP 313606 313606 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 313630 313630 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold6 SAMTools SNP 314900 314900 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C185:94 scaffold6 SAMTools SNP 314918 314918 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C6.7e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold6 SAMTools SNP 324275 324275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold6 SAMTools SNP 330358 330358 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C11%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D2.4e-06%2C4.3e-11%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold6 SAMTools SNP 330436 330436 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 330965 330965 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.11%2C1%2C2.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold6 SAMTools SNP 330985 330985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold6 SAMTools SNP 331809 331809 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold6 SAMTools SNP 332618 332618 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.4%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C69:33 scaffold6 SAMTools SNP 333978 333978 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C9.1e-13%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C236:52 scaffold6 SAMTools SNP 334030 334030 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold6 SAMTools SNP 334114 334114 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold6 SAMTools SNP 352129 352129 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold6 SAMTools SNP 353009 353009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C17%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold6 SAMTools SNP 358340 358340 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 359381 359381 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D7.64%3BPV4%3D0.2%2C0.00046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C35:37 scaffold6 SAMTools SNP 374683 374683 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold6 SAMTools SNP 375940 375940 83.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C12%2C0:21 scaffold6 SAMTools SNP 376418 376418 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold6 SAMTools SNP 376642 376642 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 377764 377764 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold6 SAMTools SNP 382835 382835 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold6 SAMTools SNP 407030 407030 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 407042 407042 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 408392 408392 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold6 SAMTools SNP 408620 408620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold6 SAMTools SNP 408623 408623 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold6 SAMTools SNP 408864 408864 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold6 SAMTools SNP 408865 408865 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold6 SAMTools SNP 409090 409090 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold6 SAMTools SNP 414018 414018 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 418270 418270 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 420974 420974 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 423295 423295 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold6 SAMTools SNP 423341 423341 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold6 SAMTools SNP 423688 423688 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold6 SAMTools SNP 424009 424009 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.086%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold6 SAMTools SNP 425086 425086 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold6 SAMTools SNP 427689 427689 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C73:76 scaffold6 SAMTools SNP 430552 430552 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold6 SAMTools SNP 433173 433173 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold6 SAMTools SNP 439234 439234 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 446324 446324 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold6 SAMTools SNP 446362 446362 13.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold6 SAMTools SNP 458400 458400 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold6 SAMTools SNP 458595 458595 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D12.2%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C41:42 scaffold6 SAMTools SNP 461980 461980 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold6 SAMTools SNP 464821 464821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 464944 464944 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 467314 467314 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold6 SAMTools SNP 467498 467498 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold6 SAMTools SNP 467723 467723 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 467939 467939 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold6 SAMTools SNP 468404 468404 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.45%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold6 SAMTools SNP 468854 468854 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold6 SAMTools SNP 468878 468878 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold6 SAMTools SNP 469037 469037 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold6 SAMTools SNP 470410 470410 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 470413 470413 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold6 SAMTools SNP 489779 489779 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold6 SAMTools SNP 489953 489953 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 489980 489980 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 490322 490322 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold6 SAMTools SNP 490374 490374 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold6 SAMTools SNP 491289 491289 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold6 SAMTools SNP 491301 491301 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold6 SAMTools SNP 491343 491343 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold6 SAMTools SNP 491578 491578 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold6 SAMTools SNP 493113 493113 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C144:36 scaffold6 SAMTools SNP 493115 493115 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0163%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold6 SAMTools SNP 493170 493170 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold6 SAMTools SNP 502908 502908 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 502918 502918 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 510066 510066 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold6 SAMTools SNP 536971 536971 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C155:50 scaffold6 SAMTools SNP 537377 537377 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C23:27 scaffold6 SAMTools SNP 537623 537623 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold6 SAMTools SNP 537941 537941 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C22%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C252:99 scaffold6 SAMTools SNP 551331 551331 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 551444 551444 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 568211 568211 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 591272 591272 73.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold6 SAMTools SNP 669552 669552 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold6 SAMTools SNP 674125 674125 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold6 SAMTools SNP 675810 675810 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C9.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold6 SAMTools SNP 675812 675812 83 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold6 SAMTools SNP 676694 676694 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.19%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C178:99 scaffold6 SAMTools SNP 677126 677126 156 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C66%2C220%2C0%2C214:39 scaffold6 SAMTools SNP 677152 677152 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold6 SAMTools SNP 685400 685400 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C233:99 scaffold6 SAMTools SNP 685433 685433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold6 SAMTools SNP 685647 685647 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C25%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.14%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold6 SAMTools SNP 686031 686031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold6 SAMTools SNP 702443 702443 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 703177 703177 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 705622 705622 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 722583 722583 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 722737 722737 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold6 SAMTools SNP 722862 722862 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 723404 723404 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold6 SAMTools SNP 723487 723487 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 723617 723617 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold6 SAMTools SNP 740915 740915 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold60 SAMTools SNP 8072 8072 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold60 SAMTools SNP 8939 8939 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold60 SAMTools SNP 20398 20398 29.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold60 SAMTools SNP 20434 20434 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold60 SAMTools SNP 20455 20455 7.39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold60 SAMTools SNP 27367 27367 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold60 SAMTools SNP 27455 27455 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold60 SAMTools SNP 27567 27567 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold60 SAMTools SNP 27606 27606 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold60 SAMTools SNP 27770 27770 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold60 SAMTools SNP 27817 27817 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold60 SAMTools SNP 28794 28794 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold60 SAMTools SNP 28854 28854 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold60 SAMTools SNP 28988 28988 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold60 SAMTools SNP 35170 35170 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold60 SAMTools SNP 35503 35503 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D44%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C230:74 scaffold60 SAMTools SNP 35766 35766 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C68%2C0%2C13%3BMQ%3D49%3BFQ%3D74%3BPV4%3D1%2C1%2C0.095%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C211:99 scaffold60 SAMTools SNP 35797 35797 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold60 SAMTools SNP 63509 63509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C19%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold60 SAMTools SNP 64079 64079 24.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold60 SAMTools SNP 64434 64434 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold60 SAMTools SNP 64442 64442 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold60 SAMTools SNP 65583 65583 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold60 SAMTools SNP 65871 65871 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C11%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold60 SAMTools SNP 65895 65895 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C45%2C18%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold60 SAMTools SNP 66474 66474 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C57%2C7%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold60 SAMTools SNP 66619 66619 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold60 SAMTools SNP 68793 68793 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C12%2C8%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.33%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold60 SAMTools SNP 68815 68815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C52%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold60 SAMTools SNP 70610 70610 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold60 SAMTools SNP 72753 72753 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C21%2C0%2C31%3BMQ%3D50%3BFQ%3D104%3BPV4%3D7.3e-12%2C1.5e-15%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold60 SAMTools SNP 73739 73739 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C53%2C28%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C0.34%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold60 SAMTools SNP 79258 79258 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold60 SAMTools SNP 80097 80097 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.29%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold60 SAMTools SNP 80166 80166 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold60 SAMTools SNP 80253 80253 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C51:54 scaffold60 SAMTools SNP 80282 80282 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold60 SAMTools SNP 81793 81793 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C5.1e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C26:29 scaffold60 SAMTools SNP 81854 81854 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C36%2C0:69 scaffold60 SAMTools SNP 81934 81934 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.021%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C86:89 scaffold60 SAMTools SNP 81971 81971 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold60 SAMTools SNP 91966 91966 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold60 SAMTools SNP 93319 93319 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C237:69 scaffold60 SAMTools SNP 93902 93902 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold60 SAMTools SNP 94099 94099 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold60 SAMTools SNP 94317 94317 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold60 SAMTools SNP 94376 94376 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold60 SAMTools SNP 94405 94405 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold60 SAMTools SNP 107327 107327 22.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold60 SAMTools SNP 107679 107679 17.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold601 SAMTools SNP 16926 16926 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold601 SAMTools SNP 16927 16927 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0078%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold601 SAMTools SNP 18825 18825 114 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C24%2C0:45 scaffold601 SAMTools SNP 32960 32960 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold601 SAMTools SNP 33056 33056 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold601 SAMTools SNP 33077 33077 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold601 SAMTools SNP 33468 33468 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.048%2C0.0029%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C135:83 scaffold601 SAMTools SNP 34548 34548 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold601 SAMTools SNP 73899 73899 97.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C12%2C0:21 scaffold601 SAMTools SNP 77984 77984 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C27%2C0:51 scaffold601 SAMTools SNP 82651 82651 31.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold601 SAMTools SNP 82683 82683 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C54%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold601 SAMTools SNP 138200 138200 40.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold601 SAMTools SNP 153126 153126 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.029%2C0.0011%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C133:84 scaffold601 SAMTools SNP 154974 154974 116 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold601 SAMTools SNP 155335 155335 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 157115 157115 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold601 SAMTools SNP 159737 159737 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold601 SAMTools SNP 159789 159789 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 160417 160417 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 161200 161200 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold601 SAMTools SNP 161665 161665 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C27%2C0:51 scaffold601 SAMTools SNP 161707 161707 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold601 SAMTools SNP 161886 161886 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C24%2C0:45 scaffold601 SAMTools SNP 161952 161952 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C21%2C0:39 scaffold601 SAMTools SNP 164175 164175 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 164389 164389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 165165 165165 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold601 SAMTools SNP 165169 165169 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 168167 168167 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.033%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C68:71 scaffold601 SAMTools SNP 168203 168203 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.61%2C2.3e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold601 SAMTools SNP 168481 168481 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C5%3BMQ%3D48%3BFQ%3D35%3BPV4%3D0.2%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C62:65 scaffold601 SAMTools SNP 168568 168568 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C3%3BMQ%3D49%3BFQ%3D170%3BPV4%3D1%2C0.023%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C249:99 scaffold601 SAMTools SNP 168592 168592 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C3%3BMQ%3D49%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold601 SAMTools SNP 168888 168888 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold601 SAMTools SNP 168912 168912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 168939 168939 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold601 SAMTools SNP 169376 169376 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold601 SAMTools SNP 169394 169394 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold601 SAMTools SNP 169472 169472 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C3%2C2%3BMQ%3D49%3BFQ%3D23%3BPV4%3D0.11%2C0.0029%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold601 SAMTools SNP 169851 169851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 169923 169923 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold601 SAMTools SNP 170382 170382 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold601 SAMTools SNP 170391 170391 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold601 SAMTools SNP 170988 170988 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold601 SAMTools SNP 171012 171012 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C57%2C0:99 scaffold601 SAMTools SNP 171393 171393 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 171429 171429 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.01%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 171459 171459 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C6e-08%2C1%2C9.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 171477 171477 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.011%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 171938 171938 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C9%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 172264 172264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C30%2C12%2C8%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.011%2C0.0064%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 172273 172273 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D46%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold601 SAMTools SNP 173725 173725 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.27%2C4.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C28%2C0:53 scaffold601 SAMTools SNP 174209 174209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C6%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold601 SAMTools SNP 174272 174272 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 175126 175126 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C105%2C0:99 scaffold601 SAMTools SNP 178676 178676 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C129:99 scaffold601 SAMTools SNP 179773 179773 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold601 SAMTools SNP 179815 179815 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold601 SAMTools SNP 180200 180200 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold601 SAMTools SNP 180248 180248 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0027%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C88:91 scaffold601 SAMTools SNP 180260 180260 202 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0015%2C0.17%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C79:82 scaffold601 SAMTools SNP 181457 181457 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C43:46 scaffold601 SAMTools SNP 182322 182322 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 182388 182388 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C219:72 scaffold601 SAMTools SNP 182707 182707 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold601 SAMTools SNP 182754 182754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold601 SAMTools SNP 183137 183137 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold601 SAMTools SNP 185045 185045 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.0067%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold601 SAMTools SNP 185395 185395 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C24%2C0:45 scaffold601 SAMTools SNP 185408 185408 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.022%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C208:65 scaffold601 SAMTools SNP 185446 185446 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C226:30 scaffold601 SAMTools SNP 186260 186260 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C242:99 scaffold601 SAMTools SNP 208442 208442 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold601 SAMTools SNP 208482 208482 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D43.6%3BPV4%3D0.14%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C81:74 scaffold601 SAMTools SNP 208510 208510 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold601 SAMTools SNP 209402 209402 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 209426 209426 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 210491 210491 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C1%2C30%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.45%2C8.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold601 SAMTools SNP 210545 210545 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C54%2C0:99 scaffold601 SAMTools SNP 210565 210565 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold601 SAMTools SNP 211143 211143 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C24%2C0:45 scaffold601 SAMTools SNP 213612 213612 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold601 SAMTools SNP 213613 213613 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.43%2C0.0013%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C224:99 scaffold601 SAMTools SNP 216924 216924 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C11%2C110%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.0011%2C5.9e-133%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold601 SAMTools SNP 217462 217462 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C28%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold601 SAMTools SNP 218288 218288 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 219894 219894 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.041%2C2.6e-10%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C80:83 scaffold601 SAMTools SNP 221375 221375 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold601 SAMTools SNP 222576 222576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold601 SAMTools SNP 223222 223222 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C2%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold601 SAMTools SNP 223270 223270 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.48%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold601 SAMTools SNP 223658 223658 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C69%2C0:99 scaffold601 SAMTools SNP 223694 223694 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold601 SAMTools SNP 223711 223711 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold601 SAMTools SNP 224080 224080 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold601 SAMTools SNP 224097 224097 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C89:87 scaffold601 SAMTools SNP 224322 224322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold601 SAMTools SNP 224385 224385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold601 SAMTools SNP 224641 224641 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 224781 224781 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 224793 224793 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 224804 224804 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 224817 224817 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold601 SAMTools SNP 225010 225010 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold601 SAMTools SNP 225266 225266 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold601 SAMTools SNP 225590 225590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 225716 225716 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 225731 225731 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold601 SAMTools SNP 225875 225875 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold601 SAMTools SNP 225926 225926 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C5.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C228:39 scaffold601 SAMTools SNP 225962 225962 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C27%2C0:49 scaffold601 SAMTools SNP 235088 235088 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 237391 237391 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C80:31 scaffold601 SAMTools SNP 243360 243360 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold601 SAMTools SNP 243640 243640 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C74:77 scaffold601 SAMTools SNP 244060 244060 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.038%2C0.011%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold601 SAMTools SNP 244328 244328 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 244393 244393 43.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold601 SAMTools SNP 244981 244981 132 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold601 SAMTools SNP 245140 245140 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold601 SAMTools SNP 245183 245183 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 246442 246442 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold601 SAMTools SNP 247813 247813 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold601 SAMTools SNP 247939 247939 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C17%2C34%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.0021%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold601 SAMTools SNP 248397 248397 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C2%2C0%2C18%3BMQ%3D50%3BFQ%3D68%3BPV4%3D7.6e-18%2C3.7e-37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold601 SAMTools SNP 248409 248409 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C18%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 248532 248532 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C61%2C18%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1.6e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 249474 249474 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C222%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 249564 249564 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 249765 249765 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold601 SAMTools SNP 262745 262745 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold601 SAMTools SNP 263236 263236 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold601 SAMTools SNP 277866 277866 9.49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold601 SAMTools SNP 278423 278423 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold601 SAMTools SNP 278692 278692 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C13%2C36%2C3%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.39%2C1.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold601 SAMTools SNP 278716 278716 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C8%2C77%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C3.4e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 278800 278800 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C48%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.049%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 278815 278815 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C76%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 278821 278821 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 279435 279435 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.57%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C215:99 scaffold601 SAMTools SNP 279483 279483 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold601 SAMTools SNP 280542 280542 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold601 SAMTools SNP 280567 280567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold601 SAMTools SNP 281033 281033 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C3%2C57%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C9.4e-08%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 281642 281642 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C59%2C3%2C77%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1.3e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold601 SAMTools SNP 282546 282546 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C18%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 283443 283443 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C6%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.0025%2C0.00042%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold601 SAMTools SNP 285384 285384 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C65%2C52%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 288205 288205 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C45%2C1%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.4%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold601 SAMTools SNP 288217 288217 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C54%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold601 SAMTools SNP 288248 288248 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C40%2C13%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.052%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold601 SAMTools SNP 288526 288526 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 288566 288566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C18%3BMQ%3D50%3BFQ%3D-96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold601 SAMTools SNP 289087 289087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C161%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 289115 289115 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold601 SAMTools SNP 289117 289117 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold601 SAMTools SNP 289168 289168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.36%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold601 SAMTools SNP 289353 289353 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.025%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C195:53 scaffold601 SAMTools SNP 289487 289487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold601 SAMTools SNP 289955 289955 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold601 SAMTools SNP 289962 289962 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C33%2C0:63 scaffold601 SAMTools SNP 290470 290470 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold601 SAMTools SNP 290495 290495 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.45%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold601 SAMTools SNP 290502 290502 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold601 SAMTools SNP 290503 290503 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 290646 290646 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 290687 290687 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 290812 290812 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold601 SAMTools SNP 290968 290968 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold601 SAMTools SNP 290988 290988 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 290999 290999 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C0.1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C132:99 scaffold601 SAMTools SNP 291039 291039 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold601 SAMTools SNP 291370 291370 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold601 SAMTools SNP 291375 291375 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold601 SAMTools SNP 291387 291387 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 291499 291499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold601 SAMTools SNP 291565 291565 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 291910 291910 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold601 SAMTools SNP 292078 292078 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold601 SAMTools SNP 292372 292372 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold601 SAMTools SNP 292533 292533 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold601 SAMTools SNP 292534 292534 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold601 SAMTools SNP 292573 292573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C394%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 292603 292603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C412%2C52%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 292963 292963 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C93%2C0%2C25%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.34%2C1%2C1%2C1.6e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold601 SAMTools SNP 292994 292994 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C129%2C0:99 scaffold601 SAMTools SNP 293218 293218 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold601 SAMTools SNP 293378 293378 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold601 SAMTools SNP 293423 293423 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold601 SAMTools SNP 293426 293426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold601 SAMTools SNP 294168 294168 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C116:99 scaffold601 SAMTools SNP 298860 298860 81.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C21%2C0:39 scaffold601 SAMTools SNP 300284 300284 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold601 SAMTools SNP 303099 303099 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.017%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold601 SAMTools SNP 303529 303529 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold601 SAMTools SNP 303977 303977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 304002 304002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 304313 304313 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 305365 305365 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold601 SAMTools SNP 305873 305873 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold601 SAMTools SNP 306164 306164 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 306176 306176 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold601 SAMTools SNP 306236 306236 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold601 SAMTools SNP 306290 306290 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold601 SAMTools SNP 308151 308151 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold601 SAMTools SNP 308172 308172 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 308410 308410 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 308587 308587 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.49%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C147:86 scaffold601 SAMTools SNP 309016 309016 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C21%2C0:39 scaffold601 SAMTools SNP 309097 309097 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C148:99 scaffold601 SAMTools SNP 309629 309629 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.0097%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C66:69 scaffold601 SAMTools SNP 309638 309638 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D64.9%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C110:95 scaffold601 SAMTools SNP 309867 309867 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.31%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold601 SAMTools SNP 309905 309905 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 310215 310215 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold601 SAMTools SNP 310384 310384 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold601 SAMTools SNP 310414 310414 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold601 SAMTools SNP 310507 310507 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold601 SAMTools SNP 310780 310780 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold601 SAMTools SNP 311107 311107 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 311645 311645 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 311678 311678 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 312300 312300 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 312342 312342 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 312615 312615 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 312621 312621 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 312693 312693 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.097%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold601 SAMTools SNP 313588 313588 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C5.3e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C107:86 scaffold601 SAMTools SNP 313880 313880 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C210:99 scaffold601 SAMTools SNP 313889 313889 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold601 SAMTools SNP 314107 314107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 314374 314374 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 314426 314426 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold601 SAMTools SNP 314593 314593 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.42%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C222:99 scaffold601 SAMTools SNP 315520 315520 184 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C6%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.22%2C0.14%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold601 SAMTools SNP 315532 315532 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.15%2C0.14%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold601 SAMTools SNP 315866 315866 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C228:99 scaffold601 SAMTools SNP 315867 315867 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C12%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.4%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C208:99 scaffold601 SAMTools SNP 316207 316207 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 318177 318177 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.2%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold601 SAMTools SNP 318536 318536 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 318696 318696 99.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold601 SAMTools SNP 318794 318794 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold601 SAMTools SNP 318986 318986 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold601 SAMTools SNP 319004 319004 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold601 SAMTools SNP 319708 319708 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold601 SAMTools SNP 319778 319778 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold601 SAMTools SNP 319947 319947 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.27%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold601 SAMTools SNP 319950 319950 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.56%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C125:99 scaffold601 SAMTools SNP 320750 320750 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold601 SAMTools SNP 321091 321091 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.18%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold601 SAMTools SNP 321469 321469 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold601 SAMTools SNP 321487 321487 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold601 SAMTools SNP 321512 321512 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C24%2C0:45 scaffold601 SAMTools SNP 321917 321917 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold601 SAMTools SNP 321928 321928 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold601 SAMTools SNP 321931 321931 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold601 SAMTools SNP 322454 322454 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold601 SAMTools SNP 323883 323883 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C17%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.27%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold601 SAMTools SNP 323927 323927 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold601 SAMTools SNP 323968 323968 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C24%2C0:45 scaffold601 SAMTools SNP 324862 324862 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold601 SAMTools SNP 324881 324881 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold601 SAMTools SNP 325015 325015 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 325294 325294 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold601 SAMTools SNP 325310 325310 116 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.017%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold601 SAMTools SNP 325335 325335 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold601 SAMTools SNP 325357 325357 152 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.037%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C192:99 scaffold601 SAMTools SNP 325399 325399 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C171:99 scaffold601 SAMTools SNP 326531 326531 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold601 SAMTools SNP 326561 326561 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold601 SAMTools SNP 328705 328705 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 329774 329774 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold601 SAMTools SNP 330234 330234 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold601 SAMTools SNP 330264 330264 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.6%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold601 SAMTools SNP 330800 330800 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold601 SAMTools SNP 330822 330822 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold601 SAMTools SNP 331034 331034 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold601 SAMTools SNP 331104 331104 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.043%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C193:97 scaffold601 SAMTools SNP 332303 332303 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C15%2C0:27 scaffold601 SAMTools SNP 332915 332915 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold601 SAMTools SNP 332925 332925 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold601 SAMTools SNP 333440 333440 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 333464 333464 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.18%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 333730 333730 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.6%2C0.29%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold601 SAMTools SNP 333751 333751 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold601 SAMTools SNP 333778 333778 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold601 SAMTools SNP 333793 333793 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 334057 334057 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C223:99 scaffold601 SAMTools SNP 395778 395778 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold601 SAMTools SNP 399175 399175 31.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold601 SAMTools SNP 421062 421062 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 452791 452791 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D3.52%3BPV4%3D0.14%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C28:31 scaffold601 SAMTools SNP 454051 454051 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold601 SAMTools SNP 454389 454389 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold601 SAMTools SNP 454457 454457 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold601 SAMTools SNP 455136 455136 98.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold601 SAMTools SNP 455163 455163 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold601 SAMTools SNP 455529 455529 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold601 SAMTools SNP 455992 455992 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 456003 456003 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 457041 457041 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold601 SAMTools SNP 457461 457461 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C172:99 scaffold601 SAMTools SNP 458634 458634 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 458670 458670 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold601 SAMTools SNP 459215 459215 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold601 SAMTools SNP 459216 459216 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold601 SAMTools SNP 459219 459219 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.048%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C198:71 scaffold601 SAMTools SNP 460854 460854 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.0016%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C201:99 scaffold601 SAMTools SNP 461294 461294 141 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold601 SAMTools SNP 461494 461494 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 461565 461565 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold601 SAMTools SNP 461576 461576 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold601 SAMTools SNP 462918 462918 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.29%2C0.1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold601 SAMTools SNP 462960 462960 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C15%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold601 SAMTools SNP 466604 466604 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C35%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold601 SAMTools SNP 466738 466738 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C60:63 scaffold601 SAMTools SNP 467021 467021 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 467937 467937 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold601 SAMTools SNP 467938 467938 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold601 SAMTools SNP 471481 471481 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 472652 472652 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold601 SAMTools SNP 474324 474324 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold601 SAMTools SNP 474352 474352 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.015%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold601 SAMTools SNP 474355 474355 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C71%2C6%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold601 SAMTools SNP 474910 474910 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C47%2C87%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-07%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 474931 474931 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 476040 476040 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C409%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 476089 476089 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold601 SAMTools SNP 476541 476541 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold601 SAMTools SNP 476590 476590 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C271%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 479198 479198 15.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold601 SAMTools SNP 480596 480596 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D43%3BFQ%3D77%3BPV4%3D1%2C6.9e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C104:99 scaffold601 SAMTools SNP 480774 480774 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.4%2C5.2e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C124:28 scaffold601 SAMTools SNP 481169 481169 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C149%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 486460 486460 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C88%2C134%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-10%2C1%2C0.082%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 495546 495546 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C31%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0036%2C0.46%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold601 SAMTools SNP 495555 495555 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C31%3BMQ%3D50%3BFQ%3D-117%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold601 SAMTools SNP 495558 495558 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold601 SAMTools SNP 495603 495603 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C19%2C35%2C9%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.82%2C1.3e-113%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold601 SAMTools SNP 495651 495651 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C40%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 495672 495672 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 495681 495681 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C62%2C22%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 498316 498316 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 498577 498577 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 499410 499410 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D668%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C157%2C226%2C64%3BMQ%3D50%3BFQ%3D134%3BPV4%3D8.1e-13%2C2.4e-296%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold601 SAMTools SNP 499542 499542 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C94%2C12%2C110%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.02%2C1.3e-121%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold601 SAMTools SNP 499706 499706 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C23%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C241%2C0:99 scaffold601 SAMTools SNP 501266 501266 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.51%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold601 SAMTools SNP 501293 501293 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C218%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 502839 502839 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C78%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 502842 502842 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C87%2C16%2C15%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.7%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold601 SAMTools SNP 502851 502851 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C82%2C32%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 506705 506705 188 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C485%2C19%2C120%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.16%2C0.021%2C1%2C8.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold601 SAMTools SNP 506711 506711 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C448%2C17%2C95%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.19%2C0.46%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold601 SAMTools SNP 507103 507103 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D291%2C38%2C220%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 507746 507746 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1124%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D247%2C265%2C409%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-17%2C1%2C1%2C7.5e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 508047 508047 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 519455 519455 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C39%2C0:75 scaffold601 SAMTools SNP 537180 537180 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 539159 539159 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold601 SAMTools SNP 539262 539262 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold601 SAMTools SNP 540840 540840 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 541415 541415 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold601 SAMTools SNP 542863 542863 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold601 SAMTools SNP 544258 544258 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold601 SAMTools SNP 545287 545287 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.076%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold601 SAMTools SNP 545293 545293 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold601 SAMTools SNP 545306 545306 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.011%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold601 SAMTools SNP 545354 545354 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold601 SAMTools SNP 545355 545355 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold601 SAMTools SNP 545359 545359 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C140:99 scaffold601 SAMTools SNP 545369 545369 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.028%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C137:99 scaffold601 SAMTools SNP 545630 545630 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold601 SAMTools SNP 545663 545663 30.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold601 SAMTools SNP 545683 545683 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 545924 545924 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C29:32 scaffold601 SAMTools SNP 545963 545963 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 545984 545984 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 546153 546153 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold601 SAMTools SNP 546162 546162 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 546336 546336 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 546356 546356 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 547167 547167 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold601 SAMTools SNP 547191 547191 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 548137 548137 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 548153 548153 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold601 SAMTools SNP 556354 556354 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold601 SAMTools SNP 556859 556859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold601 SAMTools SNP 556883 556883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold601 SAMTools SNP 573910 573910 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold601 SAMTools SNP 573940 573940 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 574125 574125 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold601 SAMTools SNP 574169 574169 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C24%2C0%3BMQ%3D48%3BFQ%3D194%3BPV4%3D0.0097%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold601 SAMTools SNP 574673 574673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C15%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.067%2C0.042%2C0.23%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 575978 575978 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold601 SAMTools SNP 575987 575987 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold601 SAMTools SNP 577200 577200 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 577237 577237 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold601 SAMTools SNP 577300 577300 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold601 SAMTools SNP 577711 577711 95.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold601 SAMTools SNP 577764 577764 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.13%2C0.13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C106:99 scaffold601 SAMTools SNP 577774 577774 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 578207 578207 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold601 SAMTools SNP 578221 578221 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold601 SAMTools SNP 578243 578243 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 578249 578249 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C46%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.1%2C1%2C3.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 578473 578473 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 584295 584295 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold601 SAMTools SNP 586594 586594 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold601 SAMTools SNP 587749 587749 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold601 SAMTools SNP 587857 587857 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold601 SAMTools SNP 588542 588542 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold601 SAMTools SNP 588872 588872 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C15%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold601 SAMTools SNP 588887 588887 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold601 SAMTools SNP 590078 590078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C18%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold601 SAMTools SNP 591403 591403 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C26%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.096%2C3.2e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold601 SAMTools SNP 591571 591571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 592649 592649 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C14%2C12%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.17%2C3.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold601 SAMTools SNP 592912 592912 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold601 SAMTools SNP 596643 596643 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold601 SAMTools SNP 607741 607741 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 638332 638332 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C186:53 scaffold601 SAMTools SNP 638512 638512 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C17%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.69%2C8.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold601 SAMTools SNP 638683 638683 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.53%2C4.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold601 SAMTools SNP 639083 639083 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C224:50 scaffold601 SAMTools SNP 639851 639851 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.071%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold601 SAMTools SNP 652263 652263 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold601 SAMTools SNP 664395 664395 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 668262 668262 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold601 SAMTools SNP 669456 669456 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold601 SAMTools SNP 672881 672881 12.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold601 SAMTools SNP 677154 677154 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 680656 680656 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold601 SAMTools SNP 681005 681005 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold601 SAMTools SNP 681037 681037 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold601 SAMTools SNP 681085 681085 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C18%2C0:33 scaffold601 SAMTools SNP 685197 685197 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 689912 689912 6.95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold601 SAMTools SNP 690334 690334 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold601 SAMTools SNP 691628 691628 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold601 SAMTools SNP 719839 719839 5.29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold601 SAMTools SNP 730289 730289 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold601 SAMTools SNP 732011 732011 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.00057%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold601 SAMTools SNP 732868 732868 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold601 SAMTools SNP 732892 732892 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C9%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.27%2C0.00087%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold601 SAMTools SNP 732921 732921 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C5%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0086%2C2.4e-07%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold601 SAMTools SNP 733341 733341 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 737309 737309 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold601 SAMTools SNP 737318 737318 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold601 SAMTools SNP 737327 737327 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold601 SAMTools SNP 737366 737366 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold601 SAMTools SNP 737381 737381 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 737449 737449 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold601 SAMTools SNP 737670 737670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C10%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold601 SAMTools SNP 737727 737727 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.32%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold601 SAMTools SNP 737775 737775 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C13%2C16%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.034%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C131:99 scaffold601 SAMTools SNP 737999 737999 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C0%2C7%3BMQ%3D49%3BFQ%3D104%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold601 SAMTools SNP 738036 738036 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C6%3BMQ%3D49%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C242:99 scaffold601 SAMTools SNP 738132 738132 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C9%2C2%3BMQ%3D31%3BFQ%3D-47%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C20%2C0:37 scaffold601 SAMTools SNP 744436 744436 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C24%2C0:45 scaffold601 SAMTools SNP 760715 760715 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold601 SAMTools SNP 761456 761456 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 763114 763114 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold601 SAMTools SNP 871407 871407 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold601 SAMTools SNP 888534 888534 61.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C12%2C0:21 scaffold601 SAMTools SNP 889488 889488 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 889530 889530 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 890638 890638 154 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C0.21%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C40%2C65%2C152%2C0%2C188:28 scaffold601 SAMTools SNP 890659 890659 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold601 SAMTools SNP 890692 890692 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C0.48%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold601 SAMTools SNP 890722 890722 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0072%2C0.025%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold601 SAMTools SNP 891980 891980 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C13%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00016%2C1%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold601 SAMTools SNP 892754 892754 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C12%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D7.4e-07%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold601 SAMTools SNP 892757 892757 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold601 SAMTools SNP 892790 892790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold601 SAMTools SNP 895329 895329 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.31%2C0.091%2C1%2C4.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold601 SAMTools SNP 895407 895407 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C0.00035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 895437 895437 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C5%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-07%2C0.00019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 895929 895929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold601 SAMTools SNP 895968 895968 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold601 SAMTools SNP 896254 896254 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 896272 896272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold601 SAMTools SNP 896619 896619 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.23%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold601 SAMTools SNP 896637 896637 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold601 SAMTools SNP 896655 896655 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold601 SAMTools SNP 896679 896679 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C0.084%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold601 SAMTools SNP 896703 896703 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold601 SAMTools SNP 897312 897312 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.005%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold601 SAMTools SNP 899774 899774 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.01%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C238:99 scaffold601 SAMTools SNP 899798 899798 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold601 SAMTools SNP 899822 899822 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold601 SAMTools SNP 899831 899831 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold601 SAMTools SNP 900346 900346 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold601 SAMTools SNP 900352 900352 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold601 SAMTools SNP 900409 900409 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 900877 900877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold601 SAMTools SNP 900893 900893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold601 SAMTools SNP 901007 901007 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold601 SAMTools SNP 902133 902133 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 902163 902163 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 922953 922953 13.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold601 SAMTools SNP 923087 923087 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C42%2C0:81 scaffold601 SAMTools SNP 923542 923542 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C42%2C0:81 scaffold601 SAMTools SNP 950707 950707 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 967249 967249 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold601 SAMTools SNP 967264 967264 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 998379 998379 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1003438 1003438 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1003439 1003439 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1048573 1048573 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1085782 1085782 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold601 SAMTools SNP 1086931 1086931 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold601 SAMTools SNP 1086962 1086962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold601 SAMTools SNP 1087402 1087402 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C12%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.25%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold601 SAMTools SNP 1087922 1087922 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold601 SAMTools SNP 1088838 1088838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold601 SAMTools SNP 1088855 1088855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold601 SAMTools SNP 1088919 1088919 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold601 SAMTools SNP 1090758 1090758 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1090986 1090986 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1091025 1091025 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold601 SAMTools SNP 1091026 1091026 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold601 SAMTools SNP 1091310 1091310 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold601 SAMTools SNP 1091376 1091376 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.3%2C0.016%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold601 SAMTools SNP 1091654 1091654 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold601 SAMTools SNP 1091692 1091692 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.00062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold601 SAMTools SNP 1092747 1092747 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold601 SAMTools SNP 1094357 1094357 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold601 SAMTools SNP 1094838 1094838 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C33%2C0:63 scaffold601 SAMTools SNP 1095533 1095533 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1095756 1095756 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold601 SAMTools SNP 1190254 1190254 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold601 SAMTools SNP 1190263 1190263 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold601 SAMTools SNP 1191046 1191046 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C21%2C0:39 scaffold601 SAMTools SNP 1191070 1191070 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold601 SAMTools SNP 1191245 1191245 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C32%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C49%2C0:95 scaffold601 SAMTools SNP 1191410 1191410 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 1191415 1191415 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold601 SAMTools SNP 1209522 1209522 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold601 SAMTools SNP 1212939 1212939 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold601 SAMTools SNP 1214864 1214864 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1222852 1222852 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1225181 1225181 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1241631 1241631 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold601 SAMTools SNP 1246524 1246524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1246565 1246565 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1249696 1249696 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 1249904 1249904 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1250092 1250092 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D22%2C56%2C0%2C9%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold601 SAMTools SNP 1251394 1251394 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold601 SAMTools SNP 1251399 1251399 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0077%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold601 SAMTools SNP 1251978 1251978 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold601 SAMTools SNP 1251984 1251984 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold601 SAMTools SNP 1252121 1252121 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold601 SAMTools SNP 1253117 1253117 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C3%2C9%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.0091%2C1.6e-23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold601 SAMTools SNP 1253198 1253198 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold601 SAMTools SNP 1253243 1253243 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold601 SAMTools SNP 1254452 1254452 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold601 SAMTools SNP 1255254 1255254 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold601 SAMTools SNP 1256842 1256842 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold601 SAMTools SNP 1257825 1257825 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold601 SAMTools SNP 1257861 1257861 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold601 SAMTools SNP 1258519 1258519 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold601 SAMTools SNP 1258540 1258540 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.22%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold601 SAMTools SNP 1258558 1258558 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.12%2C0.23%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C230:68 scaffold601 SAMTools SNP 1258861 1258861 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 13154 13154 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold602 SAMTools SNP 14087 14087 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold602 SAMTools SNP 14172 14172 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold602 SAMTools SNP 14197 14197 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 15602 15602 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold602 SAMTools SNP 15710 15710 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 15852 15852 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 19640 19640 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold602 SAMTools SNP 28372 28372 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold602 SAMTools SNP 28682 28682 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 86330 86330 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 88356 88356 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold602 SAMTools SNP 90545 90545 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold602 SAMTools SNP 94877 94877 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C9.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold602 SAMTools SNP 94969 94969 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold602 SAMTools SNP 118530 118530 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold602 SAMTools SNP 118575 118575 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold602 SAMTools SNP 119153 119153 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold602 SAMTools SNP 119338 119338 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C1%2C30%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.59%2C3.5e-42%2C1%2C2e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold602 SAMTools SNP 130825 130825 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C195:99 scaffold602 SAMTools SNP 132646 132646 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C255%2C0:99 scaffold602 SAMTools SNP 132862 132862 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C38%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C104:56 scaffold602 SAMTools SNP 133006 133006 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold602 SAMTools SNP 133086 133086 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C27%2C0:51 scaffold602 SAMTools SNP 133139 133139 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C27%2C0:51 scaffold602 SAMTools SNP 143438 143438 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold602 SAMTools SNP 145452 145452 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold602 SAMTools SNP 146007 146007 33.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold602 SAMTools SNP 146709 146709 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold602 SAMTools SNP 147293 147293 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C111%2C0:99 scaffold602 SAMTools SNP 147329 147329 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C2.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 147407 147407 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C2.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 147530 147530 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold602 SAMTools SNP 156982 156982 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold602 SAMTools SNP 157161 157161 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold602 SAMTools SNP 157384 157384 9.97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold602 SAMTools SNP 159310 159310 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold602 SAMTools SNP 159388 159388 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 162081 162081 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold602 SAMTools SNP 162380 162380 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold602 SAMTools SNP 179272 179272 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 213810 213810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold602 SAMTools SNP 214811 214811 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold602 SAMTools SNP 216092 216092 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C32:35 scaffold602 SAMTools SNP 238713 238713 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D41%3BFQ%3D71%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C151:99 scaffold602 SAMTools SNP 238744 238744 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D38%3BFQ%3D59%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C123:89 scaffold602 SAMTools SNP 239227 239227 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D47%3BFQ%3D85%3BPV4%3D0.3%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C112:99 scaffold602 SAMTools SNP 239651 239651 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0263%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D1%2C0.14%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold602 SAMTools SNP 239705 239705 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D46%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C77:80 scaffold602 SAMTools SNP 243912 243912 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.25%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold602 SAMTools SNP 245529 245529 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C7e-06%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold602 SAMTools SNP 245799 245799 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 245821 245821 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 246839 246839 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C34%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold602 SAMTools SNP 246875 246875 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold602 SAMTools SNP 247047 247047 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0005%2C0.3%2C1%2C1.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C210:99 scaffold602 SAMTools SNP 247076 247076 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold602 SAMTools SNP 247101 247101 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C177:99 scaffold602 SAMTools SNP 247103 247103 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold602 SAMTools SNP 248227 248227 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 249070 249070 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold602 SAMTools SNP 249201 249201 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold602 SAMTools SNP 249238 249238 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 250549 250549 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold602 SAMTools SNP 250569 250569 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C222:66 scaffold602 SAMTools SNP 250936 250936 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold602 SAMTools SNP 251940 251940 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold602 SAMTools SNP 251989 251989 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold602 SAMTools SNP 252096 252096 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold602 SAMTools SNP 261038 261038 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold602 SAMTools SNP 303329 303329 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold602 SAMTools SNP 307218 307218 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 307472 307472 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.087%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold602 SAMTools SNP 308086 308086 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.00024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold602 SAMTools SNP 309847 309847 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.012%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C176:54 scaffold602 SAMTools SNP 309985 309985 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold602 SAMTools SNP 311775 311775 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold602 SAMTools SNP 318583 318583 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.22%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold602 SAMTools SNP 318602 318602 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold602 SAMTools SNP 321061 321061 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold602 SAMTools SNP 333501 333501 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C0%2C89%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 336337 336337 72.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold602 SAMTools SNP 340007 340007 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C24%2C22%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 340079 340079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 340106 340106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C66%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold602 SAMTools SNP 340334 340334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold602 SAMTools SNP 340562 340562 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.47%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold602 SAMTools SNP 340574 340574 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.32%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold602 SAMTools SNP 340744 340744 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 340841 340841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C1%2C56%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 341043 341043 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C87%2C4%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 341594 341594 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C5%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.74%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold602 SAMTools SNP 341613 341613 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C20%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 342436 342436 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C26%2C29%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 342636 342636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C31%2C19%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 342927 342927 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C2%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold602 SAMTools SNP 342957 342957 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C6%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.5%2C1.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold602 SAMTools SNP 343298 343298 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 343428 343428 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C5%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.38%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold602 SAMTools SNP 343620 343620 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C40%2C0%2C15%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold602 SAMTools SNP 344033 344033 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C52%2C7%2C9%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.6%2C0.13%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold602 SAMTools SNP 344097 344097 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C50%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold602 SAMTools SNP 344187 344187 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.66%2C7.6e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold602 SAMTools SNP 345301 345301 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 345349 345349 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold602 SAMTools SNP 346473 346473 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C28%2C3%2C9%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.027%2C0.085%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold602 SAMTools SNP 346572 346572 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C4%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.21%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold602 SAMTools SNP 346611 346611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C43%2C9%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 347015 347015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C166%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 349545 349545 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold602 SAMTools SNP 352152 352152 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 352194 352194 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 352808 352808 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold602 SAMTools SNP 352829 352829 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C22%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold602 SAMTools SNP 354142 354142 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold602 SAMTools SNP 355113 355113 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C55%2C7%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.6%2C0.057%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold602 SAMTools SNP 355116 355116 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C14%2C28%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.043%2C3.3e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold602 SAMTools SNP 356619 356619 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold602 SAMTools SNP 357951 357951 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0440%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.027%2C3.1e-15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold602 SAMTools SNP 358313 358313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C20%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold602 SAMTools SNP 358373 358373 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold602 SAMTools SNP 359625 359625 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C13%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 359806 359806 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C18%2C15%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.12%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold602 SAMTools SNP 360362 360362 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 360893 360893 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold602 SAMTools SNP 360905 360905 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C31%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold602 SAMTools SNP 360968 360968 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.077%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold602 SAMTools SNP 361371 361371 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C45%2C32%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 361777 361777 56.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold602 SAMTools SNP 362183 362183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold602 SAMTools SNP 362579 362579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold602 SAMTools SNP 362624 362624 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold602 SAMTools SNP 362720 362720 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold602 SAMTools SNP 362822 362822 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C13%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 363792 363792 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C21%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1.6e-14%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 364116 364116 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 364353 364353 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 364576 364576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C7%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 365379 365379 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C32%2C21%2C5%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.0085%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold602 SAMTools SNP 365403 365403 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C39%2C12%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 365430 365430 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C52%2C16%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 366042 366042 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D134%2C55%2C39%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 366979 366979 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C0.014%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C23%2C0:43 scaffold602 SAMTools SNP 367033 367033 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C161%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 367429 367429 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 367435 367435 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 367682 367682 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 367694 367694 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 367900 367900 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold602 SAMTools SNP 367939 367939 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold602 SAMTools SNP 368161 368161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 368173 368173 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 368230 368230 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 368257 368257 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold602 SAMTools SNP 368469 368469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold602 SAMTools SNP 368737 368737 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D774%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C273%2C27%2C146%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-09%2C1%2C1%2C2e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 368887 368887 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C16%2C136%2C7%3BMQ%3D13%3BFQ%3D42%3BPV4%3D0.2%2C1%2C0.21%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C140:72 scaffold602 SAMTools SNP 369415 369415 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C91%2C223%2C27%3BMQ%3D35%3BFQ%3D225%3BPV4%3D2.2e-08%2C0.27%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 369513 369513 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold602 SAMTools SNP 369897 369897 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D864%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C400%2C45%2C340%3BMQ%3D29%3BFQ%3D144%3BPV4%3D0.36%2C1.4e-136%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold602 SAMTools SNP 369951 369951 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D910%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C121%2C764%3BMQ%3D30%3BFQ%3D-282%3BPV4%3D1%2C5.3e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C255%2C0:99 scaffold602 SAMTools SNP 370238 370238 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C72%2C12%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 370376 370376 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C255%2C0:99 scaffold602 SAMTools SNP 370553 370553 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C72%2C66%2C47%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.0059%2C3.9e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold602 SAMTools SNP 370610 370610 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C56%2C63%2C42%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.6%2C3.9e-204%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold602 SAMTools SNP 372735 372735 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold602 SAMTools SNP 373135 373135 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold602 SAMTools SNP 375146 375146 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.037%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold602 SAMTools SNP 375155 375155 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold602 SAMTools SNP 391427 391427 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.18%2C0.014%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C234:99 scaffold602 SAMTools SNP 392247 392247 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold602 SAMTools SNP 392263 392263 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold602 SAMTools SNP 392300 392300 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold602 SAMTools SNP 392390 392390 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C78%2C0:99 scaffold602 SAMTools SNP 395477 395477 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C41%2C27%2C32%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.73%2C6.3e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold602 SAMTools SNP 395672 395672 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C129:47 scaffold602 SAMTools SNP 398552 398552 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold602 SAMTools SNP 404676 404676 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.14%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C169:42 scaffold602 SAMTools SNP 404755 404755 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold602 SAMTools SNP 405452 405452 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 407276 407276 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.013%2C0.074%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold602 SAMTools SNP 407609 407609 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.024%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold602 SAMTools SNP 407704 407704 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C17%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 422104 422104 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 424948 424948 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold602 SAMTools SNP 424992 424992 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold602 SAMTools SNP 426582 426582 65.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C18%2C0:33 scaffold602 SAMTools SNP 426608 426608 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C54%2C0:99 scaffold602 SAMTools SNP 427579 427579 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold602 SAMTools SNP 429733 429733 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold602 SAMTools SNP 430632 430632 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C30%2C0:57 scaffold602 SAMTools SNP 440646 440646 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C244:99 scaffold602 SAMTools SNP 441705 441705 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C27%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold602 SAMTools SNP 441908 441908 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold602 SAMTools SNP 441911 441911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold602 SAMTools SNP 442128 442128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold602 SAMTools SNP 442276 442276 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C8%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.068%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 442294 442294 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 444721 444721 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 446747 446747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 446985 446985 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C9%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 447935 447935 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C26%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold602 SAMTools SNP 448244 448244 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold602 SAMTools SNP 448689 448689 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C11%2C9%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.4%2C1.1e-17%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold602 SAMTools SNP 448747 448747 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C20%2C30%2C11%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.4e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold602 SAMTools SNP 449623 449623 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 449753 449753 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C35%2C0%2C18%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.05%2C3.8e-05%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold602 SAMTools SNP 450626 450626 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C12%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 451865 451865 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C13%2C44%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.62%2C5.3e-78%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold602 SAMTools SNP 451877 451877 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C8%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0074%2C1%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold602 SAMTools SNP 451920 451920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C195%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 452229 452229 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0084%2C5.9e-11%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold602 SAMTools SNP 480993 480993 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.13%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold602 SAMTools SNP 482494 482494 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold602 SAMTools SNP 482747 482747 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold602 SAMTools SNP 484678 484678 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C5%2C11%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.75%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold602 SAMTools SNP 485264 485264 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold602 SAMTools SNP 485287 485287 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold602 SAMTools SNP 490064 490064 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C48%2C0:93 scaffold602 SAMTools SNP 490319 490319 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D0.33%2C0.1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C41:41 scaffold602 SAMTools SNP 490500 490500 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold602 SAMTools SNP 491079 491079 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold602 SAMTools SNP 491240 491240 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold602 SAMTools SNP 491290 491290 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold602 SAMTools SNP 491641 491641 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold602 SAMTools SNP 491683 491683 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 497653 497653 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 497675 497675 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 511739 511739 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold602 SAMTools SNP 511954 511954 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold602 SAMTools SNP 511975 511975 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold602 SAMTools SNP 512660 512660 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 513297 513297 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold602 SAMTools SNP 513966 513966 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C2.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C161:33 scaffold602 SAMTools SNP 514605 514605 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C45%2C0:87 scaffold602 SAMTools SNP 514707 514707 42.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold602 SAMTools SNP 515052 515052 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold602 SAMTools SNP 526217 526217 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.3e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C179:49 scaffold602 SAMTools SNP 526826 526826 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C17%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold602 SAMTools SNP 527385 527385 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C17%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold602 SAMTools SNP 527736 527736 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold602 SAMTools SNP 527775 527775 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold602 SAMTools SNP 528147 528147 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.43%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C121:37 scaffold602 SAMTools SNP 529027 529027 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold602 SAMTools SNP 529147 529147 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.026%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold602 SAMTools SNP 536542 536542 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold602 SAMTools SNP 536659 536659 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.01%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C188:99 scaffold602 SAMTools SNP 536961 536961 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 540038 540038 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C74:77 scaffold602 SAMTools SNP 540045 540045 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C117:46 scaffold602 SAMTools SNP 542966 542966 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.11%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C100:49 scaffold602 SAMTools SNP 543305 543305 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold602 SAMTools SNP 543310 543310 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold602 SAMTools SNP 543323 543323 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold602 SAMTools SNP 543497 543497 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 543554 543554 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold602 SAMTools SNP 543579 543579 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold602 SAMTools SNP 543755 543755 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold602 SAMTools SNP 548929 548929 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold602 SAMTools SNP 548938 548938 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold602 SAMTools SNP 549004 549004 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold602 SAMTools SNP 551051 551051 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold602 SAMTools SNP 551510 551510 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold602 SAMTools SNP 551594 551594 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C8.9e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C119:99 scaffold602 SAMTools SNP 551627 551627 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold602 SAMTools SNP 551913 551913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold602 SAMTools SNP 551919 551919 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold602 SAMTools SNP 552128 552128 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold602 SAMTools SNP 552185 552185 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold602 SAMTools SNP 552356 552356 103 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold602 SAMTools SNP 552368 552368 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C1%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.45%2C0.1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold602 SAMTools SNP 552395 552395 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C17%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-08%2C1%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 552794 552794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold602 SAMTools SNP 553043 553043 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.028%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold602 SAMTools SNP 553104 553104 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 554518 554518 7.08 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold602 SAMTools SNP 593878 593878 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold602 SAMTools SNP 594419 594419 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 613554 613554 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold602 SAMTools SNP 619075 619075 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold602 SAMTools SNP 640454 640454 9.33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D12%3BFQ%3D-37%3BPV4%3D1%2C0.012%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C10%2C0:13 scaffold602 SAMTools SNP 640460 640460 8.75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C18%2C0:23 scaffold602 SAMTools SNP 674103 674103 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold602 SAMTools SNP 674240 674240 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold602 SAMTools SNP 674285 674285 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold602 SAMTools SNP 674354 674354 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold602 SAMTools SNP 674529 674529 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 675637 675637 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 676251 676251 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 679243 679243 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 697123 697123 8.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold602 SAMTools SNP 697263 697263 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 697491 697491 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 700141 700141 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 726095 726095 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 726128 726128 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 726462 726462 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C41:44 scaffold602 SAMTools SNP 726827 726827 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 734428 734428 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold602 SAMTools SNP 734429 734429 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.13%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C183:99 scaffold602 SAMTools SNP 734958 734958 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold602 SAMTools SNP 735499 735499 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C32%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C207:99 scaffold602 SAMTools SNP 735523 735523 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold602 SAMTools SNP 736622 736622 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C30%2C0:57 scaffold602 SAMTools SNP 736664 736664 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold602 SAMTools SNP 736851 736851 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0016%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold602 SAMTools SNP 737577 737577 55.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold602 SAMTools SNP 737702 737702 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 737970 737970 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 738850 738850 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 738903 738903 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold602 SAMTools SNP 740905 740905 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold602 SAMTools SNP 741245 741245 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 741643 741643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold602 SAMTools SNP 741864 741864 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C0%2C0:3 scaffold602 SAMTools SNP 741926 741926 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold602 SAMTools SNP 741978 741978 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold602 SAMTools SNP 742584 742584 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 742672 742672 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 743776 743776 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold602 SAMTools SNP 743794 743794 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 744224 744224 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 744449 744449 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 744545 744545 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 744820 744820 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold602 SAMTools SNP 756214 756214 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold602 SAMTools SNP 756230 756230 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold602 SAMTools SNP 777410 777410 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 777446 777446 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 778135 778135 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold602 SAMTools SNP 779304 779304 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold602 SAMTools SNP 780427 780427 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold602 SAMTools SNP 780432 780432 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold602 SAMTools SNP 781108 781108 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold602 SAMTools SNP 781955 781955 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold602 SAMTools SNP 781956 781956 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.52%2C0.047%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold602 SAMTools SNP 782802 782802 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C24%2C0:45 scaffold602 SAMTools SNP 782853 782853 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C0.45%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold602 SAMTools SNP 783112 783112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.49%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 783181 783181 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C5%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 783302 783302 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C1%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 783943 783943 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.17%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C242:59 scaffold602 SAMTools SNP 784637 784637 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold602 SAMTools SNP 784662 784662 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C10%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.00036%2C4.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold602 SAMTools SNP 784792 784792 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold602 SAMTools SNP 784823 784823 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.068%2C5.6e-06%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold602 SAMTools SNP 785183 785183 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold602 SAMTools SNP 787097 787097 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold602 SAMTools SNP 787862 787862 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold602 SAMTools SNP 787863 787863 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold602 SAMTools SNP 788580 788580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold602 SAMTools SNP 789016 789016 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C15%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold602 SAMTools SNP 789070 789070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C6%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C3.1e-17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 790974 790974 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 791041 791041 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 791399 791399 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C12%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D4e-05%2C5.6e-09%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold602 SAMTools SNP 791762 791762 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.02%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 791937 791937 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold602 SAMTools SNP 792962 792962 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C22%2C0%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.001%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold602 SAMTools SNP 793018 793018 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C12%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold602 SAMTools SNP 793317 793317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C44%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold602 SAMTools SNP 793697 793697 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold602 SAMTools SNP 793702 793702 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.06%2C0.00082%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold602 SAMTools SNP 793719 793719 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.093%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold602 SAMTools SNP 793727 793727 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.13%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold602 SAMTools SNP 794480 794480 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 794697 794697 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 795086 795086 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 795119 795119 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C13%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.013%2C0.064%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold602 SAMTools SNP 795783 795783 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 796519 796519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C29%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold602 SAMTools SNP 796590 796590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C6.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 798460 798460 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold602 SAMTools SNP 798478 798478 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold602 SAMTools SNP 800648 800648 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.4%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C109:47 scaffold602 SAMTools SNP 800732 800732 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold602 SAMTools SNP 801416 801416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold602 SAMTools SNP 801452 801452 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold602 SAMTools SNP 801518 801518 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.43%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold602 SAMTools SNP 802269 802269 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C232:46 scaffold602 SAMTools SNP 802968 802968 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold602 SAMTools SNP 810038 810038 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold602 SAMTools SNP 813377 813377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C330%2C0%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 813391 813391 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D242%2C2%2C256%2C1%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.61%2C4.1e-32%2C4.5e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 813733 813733 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D926%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C447%2C479%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold602 SAMTools SNP 815500 815500 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C71:46 scaffold602 SAMTools SNP 815668 815668 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C33%2C0:63 scaffold602 SAMTools SNP 816440 816440 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C0%2C11%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.018%2C1.2e-12%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold602 SAMTools SNP 816491 816491 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C37%2C9%2C21%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C3.2e-43%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold602 SAMTools SNP 816930 816930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C31%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.44%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold602 SAMTools SNP 816933 816933 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C31%2C4%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.71%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold602 SAMTools SNP 817963 817963 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold602 SAMTools SNP 819760 819760 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C12%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.17%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold602 SAMTools SNP 820093 820093 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold602 SAMTools SNP 820166 820166 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold602 SAMTools SNP 820196 820196 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold602 SAMTools SNP 821085 821085 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold602 SAMTools SNP 822982 822982 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold602 SAMTools SNP 823063 823063 37.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold602 SAMTools SNP 825695 825695 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold602 SAMTools SNP 826055 826055 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C21%3BMQ%3D49%3BFQ%3D145%3BPV4%3D0.11%2C1%2C0.31%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold603 SAMTools SNP 3322 3322 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold603 SAMTools SNP 3407 3407 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold603 SAMTools SNP 3414 3414 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 12514 12514 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C36%2C0:48 scaffold603 SAMTools SNP 36129 36129 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold603 SAMTools SNP 45947 45947 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold603 SAMTools SNP 52916 52916 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold603 SAMTools SNP 52957 52957 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.025%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C0:5 scaffold603 SAMTools SNP 57672 57672 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 57767 57767 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 87392 87392 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold603 SAMTools SNP 88683 88683 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold603 SAMTools SNP 89680 89680 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold603 SAMTools SNP 89702 89702 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold603 SAMTools SNP 91848 91848 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 92696 92696 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold603 SAMTools SNP 93442 93442 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold603 SAMTools SNP 93448 93448 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold603 SAMTools SNP 95240 95240 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold603 SAMTools SNP 95245 95245 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold603 SAMTools SNP 95296 95296 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold603 SAMTools SNP 95749 95749 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold603 SAMTools SNP 95896 95896 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold603 SAMTools SNP 96830 96830 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold603 SAMTools SNP 128222 128222 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold603 SAMTools SNP 129162 129162 137 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C47%2C1%2C10%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.56%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold603 SAMTools SNP 129505 129505 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C163:99 scaffold603 SAMTools SNP 129691 129691 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 129724 129724 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C6%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.72%2C0.0055%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold603 SAMTools SNP 130577 130577 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.14%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 130925 130925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 131348 131348 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C240:99 scaffold603 SAMTools SNP 131359 131359 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold603 SAMTools SNP 131369 131369 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C132:99 scaffold603 SAMTools SNP 139723 139723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold603 SAMTools SNP 139764 139764 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C232:99 scaffold603 SAMTools SNP 139766 139766 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.00015%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold603 SAMTools SNP 140345 140345 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold603 SAMTools SNP 141827 141827 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C9%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.24%2C9.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold603 SAMTools SNP 145062 145062 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold603 SAMTools SNP 145086 145086 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold603 SAMTools SNP 147387 147387 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C0.059%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold603 SAMTools SNP 158377 158377 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.52%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold603 SAMTools SNP 158384 158384 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.31%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold603 SAMTools SNP 158877 158877 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold603 SAMTools SNP 158880 158880 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C111:99 scaffold603 SAMTools SNP 158918 158918 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 159561 159561 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold603 SAMTools SNP 160173 160173 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold603 SAMTools SNP 160240 160240 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 162193 162193 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold603 SAMTools SNP 162276 162276 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold603 SAMTools SNP 162684 162684 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold603 SAMTools SNP 162693 162693 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold603 SAMTools SNP 162939 162939 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold603 SAMTools SNP 162953 162953 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.51%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold603 SAMTools SNP 163552 163552 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C41%2C1%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.66%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold603 SAMTools SNP 163607 163607 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C22%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 164259 164259 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C3%2C8%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold603 SAMTools SNP 167910 167910 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold603 SAMTools SNP 167931 167931 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold603 SAMTools SNP 167943 167943 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.49%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold603 SAMTools SNP 168202 168202 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C237:99 scaffold603 SAMTools SNP 168253 168253 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.0066%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold603 SAMTools SNP 168682 168682 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 168737 168737 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.15%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold603 SAMTools SNP 168827 168827 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 169044 169044 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C3.9e-22%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C162:33 scaffold603 SAMTools SNP 169173 169173 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.0085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 170894 170894 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold603 SAMTools SNP 170953 170953 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold603 SAMTools SNP 171604 171604 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold603 SAMTools SNP 171662 171662 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold603 SAMTools SNP 172646 172646 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 173929 173929 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold603 SAMTools SNP 173949 173949 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold603 SAMTools SNP 185011 185011 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 203220 203220 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C2%3BMQ%3D49%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold603 SAMTools SNP 204066 204066 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D27%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C0.066%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C13:16 scaffold603 SAMTools SNP 205162 205162 77.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D37%3BFQ%3D-34%3BPV4%3D0.17%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C7%2C0:12 scaffold603 SAMTools SNP 205171 205171 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold603 SAMTools SNP 205523 205523 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold603 SAMTools SNP 205538 205538 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold603 SAMTools SNP 205703 205703 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold603 SAMTools SNP 205736 205736 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold603 SAMTools SNP 205763 205763 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold603 SAMTools SNP 206051 206051 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold603 SAMTools SNP 206067 206067 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 207447 207447 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 217102 217102 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold603 SAMTools SNP 217145 217145 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold603 SAMTools SNP 217182 217182 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold603 SAMTools SNP 232647 232647 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold604 SAMTools SNP 2308 2308 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold604 SAMTools SNP 2604 2604 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold604 SAMTools SNP 6729 6729 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold604 SAMTools SNP 6913 6913 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold604 SAMTools SNP 7496 7496 20.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold604 SAMTools SNP 8859 8859 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold604 SAMTools SNP 21276 21276 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 29668 29668 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 29960 29960 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold604 SAMTools SNP 30014 30014 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold604 SAMTools SNP 36040 36040 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold604 SAMTools SNP 38012 38012 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold604 SAMTools SNP 38016 38016 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold604 SAMTools SNP 48005 48005 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2100%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1087%2C2%2C994%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 48541 48541 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 49436 49436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D165%2C58%2C126%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 49454 49454 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D144%2C58%2C127%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 49789 49789 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C79%2C10%2C16%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.4%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold604 SAMTools SNP 49810 49810 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C18%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 50111 50111 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D782%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D269%2C61%2C355%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 50483 50483 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C10%2C0%2C52%3BMQ%3D49%3BFQ%3D79%3BPV4%3D2.7e-34%2C1%2C1%2C2.3e-26;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold604 SAMTools SNP 51031 51031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D835%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C578%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold604 SAMTools SNP 51151 51151 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D689%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C229%2C121%2C182%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.94%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 51725 51725 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1469%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D467%2C306%2C445%2C251%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.34%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 52794 52794 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C31%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C22%2C117:98 scaffold604 SAMTools SNP 52958 52958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C422%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold604 SAMTools SNP 52979 52979 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C462%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold604 SAMTools SNP 57583 57583 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C7%3BMQ%3D46%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold604 SAMTools SNP 59758 59758 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C10%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold604 SAMTools SNP 60367 60367 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold604 SAMTools SNP 63854 63854 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold604 SAMTools SNP 73599 73599 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold604 SAMTools SNP 76926 76926 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C30%2C0:57 scaffold604 SAMTools SNP 77152 77152 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C254:99 scaffold604 SAMTools SNP 77200 77200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold604 SAMTools SNP 77372 77372 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold604 SAMTools SNP 77375 77375 173 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.0042%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold604 SAMTools SNP 77904 77904 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold604 SAMTools SNP 78675 78675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold604 SAMTools SNP 78708 78708 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold604 SAMTools SNP 78899 78899 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold604 SAMTools SNP 79417 79417 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold604 SAMTools SNP 79418 79418 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold604 SAMTools SNP 79559 79559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold604 SAMTools SNP 80110 80110 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold604 SAMTools SNP 89634 89634 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C222:49 scaffold604 SAMTools SNP 92753 92753 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C165%2C22%2C13%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.0051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold604 SAMTools SNP 92772 92772 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C27%2C88%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold604 SAMTools SNP 93139 93139 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold604 SAMTools SNP 93466 93466 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold604 SAMTools SNP 93489 93489 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold604 SAMTools SNP 93498 93498 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.057%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold604 SAMTools SNP 117435 117435 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold604 SAMTools SNP 118588 118588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold604 SAMTools SNP 122441 122441 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold604 SAMTools SNP 122443 122443 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold605 SAMTools SNP 1169 1169 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold605 SAMTools SNP 1170 1170 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold605 SAMTools SNP 1302 1302 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold605 SAMTools SNP 1326 1326 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold605 SAMTools SNP 3127 3127 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.38%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold605 SAMTools SNP 3130 3130 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold605 SAMTools SNP 13901 13901 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold605 SAMTools SNP 25950 25950 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.33%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold605 SAMTools SNP 26203 26203 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold605 SAMTools SNP 68495 68495 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold605 SAMTools SNP 68832 68832 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold605 SAMTools SNP 69147 69147 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C0.00023%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold605 SAMTools SNP 69590 69590 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold605 SAMTools SNP 70113 70113 18.6 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold605 SAMTools SNP 91953 91953 10.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold605 SAMTools SNP 97017 97017 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 50168 50168 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 51466 51466 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 168617 168617 17.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D23%3BFQ%3D-35%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C8%2C0:13 scaffold606 SAMTools SNP 168632 168632 21.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold606 SAMTools SNP 169954 169954 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold606 SAMTools SNP 170755 170755 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C12:15 scaffold606 SAMTools SNP 170761 170761 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C21%2C0:39 scaffold606 SAMTools SNP 170815 170815 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold606 SAMTools SNP 170836 170836 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold606 SAMTools SNP 171503 171503 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 172563 172563 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 172576 172576 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold606 SAMTools SNP 173731 173731 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.15%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C228:63 scaffold606 SAMTools SNP 173766 173766 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold606 SAMTools SNP 174074 174074 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold606 SAMTools SNP 174095 174095 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold606 SAMTools SNP 174168 174168 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 175089 175089 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 183614 183614 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold606 SAMTools SNP 186031 186031 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold606 SAMTools SNP 186043 186043 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 186632 186632 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 186723 186723 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold606 SAMTools SNP 188272 188272 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold606 SAMTools SNP 188275 188275 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold606 SAMTools SNP 190089 190089 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold606 SAMTools SNP 236577 236577 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold606 SAMTools SNP 245567 245567 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.041%2C1%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold606 SAMTools SNP 245642 245642 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold606 SAMTools SNP 245690 245690 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C8%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.6%2C6.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold606 SAMTools SNP 245725 245725 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.45%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold606 SAMTools SNP 245801 245801 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.0076%2C2.2e-32%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C237:96 scaffold606 SAMTools SNP 246024 246024 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C173:99 scaffold606 SAMTools SNP 246429 246429 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold606 SAMTools SNP 246485 246485 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold606 SAMTools SNP 249339 249339 45.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold606 SAMTools SNP 250215 250215 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.55%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold606 SAMTools SNP 302712 302712 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold606 SAMTools SNP 306997 306997 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold606 SAMTools SNP 307031 307031 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold606 SAMTools SNP 311225 311225 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold608 SAMTools SNP 2742 2742 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold608 SAMTools SNP 5185 5185 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold608 SAMTools SNP 5242 5242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold608 SAMTools SNP 6068 6068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold608 SAMTools SNP 6131 6131 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C11%2C54%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.25%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold608 SAMTools SNP 15920 15920 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold608 SAMTools SNP 27022 27022 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold608 SAMTools SNP 27149 27149 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold608 SAMTools SNP 29227 29227 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold608 SAMTools SNP 33564 33564 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D6.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold608 SAMTools SNP 33663 33663 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold608 SAMTools SNP 34683 34683 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold608 SAMTools SNP 34719 34719 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.044%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold608 SAMTools SNP 34776 34776 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold608 SAMTools SNP 36270 36270 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold608 SAMTools SNP 37683 37683 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold608 SAMTools SNP 37739 37739 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold608 SAMTools SNP 37920 37920 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold608 SAMTools SNP 37951 37951 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold608 SAMTools SNP 40335 40335 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold608 SAMTools SNP 41134 41134 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C0.026%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold608 SAMTools SNP 41137 41137 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.63%2C0.034%2C1%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold608 SAMTools SNP 41947 41947 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C5.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold608 SAMTools SNP 42357 42357 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold608 SAMTools SNP 42399 42399 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold608 SAMTools SNP 42710 42710 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C254:99 scaffold608 SAMTools SNP 42713 42713 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C254:99 scaffold608 SAMTools SNP 48552 48552 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold608 SAMTools SNP 57908 57908 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold608 SAMTools SNP 59400 59400 35.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold608 SAMTools SNP 65449 65449 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold608 SAMTools SNP 71200 71200 53.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold608 SAMTools SNP 71786 71786 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold608 SAMTools SNP 72258 72258 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold608 SAMTools SNP 72544 72544 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.9e-18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C166:42 scaffold608 SAMTools SNP 72670 72670 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C11%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.00039%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold608 SAMTools SNP 72693 72693 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C11%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D5.6e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold608 SAMTools SNP 72777 72777 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 4489 4489 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold609 SAMTools SNP 4826 4826 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 4956 4956 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold609 SAMTools SNP 5366 5366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold609 SAMTools SNP 5448 5448 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold609 SAMTools SNP 5505 5505 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C21%2C11%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.0045%2C1.2e-25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold609 SAMTools SNP 5517 5517 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0045%2C7.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold609 SAMTools SNP 5547 5547 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 5574 5574 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold609 SAMTools SNP 5809 5809 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C21%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold609 SAMTools SNP 5899 5899 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0068%2C0.0026%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold609 SAMTools SNP 5923 5923 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.01%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C151:99 scaffold609 SAMTools SNP 5961 5961 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.53%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold609 SAMTools SNP 6143 6143 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 6313 6313 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0325%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D34%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold609 SAMTools SNP 6322 6322 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 6410 6410 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C6%2C4%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold609 SAMTools SNP 6451 6451 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold609 SAMTools SNP 6727 6727 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D46%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold609 SAMTools SNP 6766 6766 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C10%2C9%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 7263 7263 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C12%2C2%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.27%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 7427 7427 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C30%3BMQ%3D44%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold609 SAMTools SNP 8402 8402 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C1%2C12%3BMQ%3D49%3BFQ%3D213%3BPV4%3D0.067%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold609 SAMTools SNP 8426 8426 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.09%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold609 SAMTools SNP 8435 8435 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.18%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold609 SAMTools SNP 8481 8481 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C6.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C229:94 scaffold609 SAMTools SNP 8954 8954 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C69%2C0:99 scaffold609 SAMTools SNP 11563 11563 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 11574 11574 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 11904 11904 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold609 SAMTools SNP 11927 11927 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold609 SAMTools SNP 13737 13737 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C228:99 scaffold609 SAMTools SNP 14386 14386 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C229:99 scaffold609 SAMTools SNP 14471 14471 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C229:99 scaffold609 SAMTools SNP 15470 15470 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 15476 15476 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 16033 16033 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C18%2C0:33 scaffold609 SAMTools SNP 16051 16051 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold609 SAMTools SNP 16484 16484 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold609 SAMTools SNP 16621 16621 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold609 SAMTools SNP 16672 16672 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 16938 16938 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C37%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold609 SAMTools SNP 17271 17271 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C37%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold609 SAMTools SNP 17343 17343 27.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold609 SAMTools SNP 17511 17511 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 18091 18091 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 18100 18100 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold609 SAMTools SNP 18172 18172 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.0012%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 18196 18196 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.024%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold609 SAMTools SNP 18719 18719 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold609 SAMTools SNP 18818 18818 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold609 SAMTools SNP 18826 18826 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold609 SAMTools SNP 19170 19170 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold609 SAMTools SNP 19296 19296 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold609 SAMTools SNP 19777 19777 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold609 SAMTools SNP 19945 19945 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.63%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold609 SAMTools SNP 20467 20467 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C75%2C1%2C56%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.64%2C4.3e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold609 SAMTools SNP 20500 20500 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C77%2C0%2C56%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C4.6e-71%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold609 SAMTools SNP 21899 21899 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold609 SAMTools SNP 40804 40804 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold609 SAMTools SNP 40924 40924 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold609 SAMTools SNP 41041 41041 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold609 SAMTools SNP 41181 41181 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.002%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold609 SAMTools SNP 41446 41446 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold609 SAMTools SNP 96602 96602 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 149044 149044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 155434 155434 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C15%2C0:27 scaffold609 SAMTools SNP 156559 156559 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D40%3BFQ%3D11.3%3BPV4%3D0.029%2C0.12%2C0.012%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C134:40 scaffold609 SAMTools SNP 156592 156592 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D41%3BFQ%3D39%3BPV4%3D0.17%2C0.37%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C160:69 scaffold609 SAMTools SNP 157128 157128 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D38%3BFQ%3D43%3BPV4%3D0.048%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C77:73 scaffold609 SAMTools SNP 157266 157266 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C241:99 scaffold609 SAMTools SNP 158236 158236 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C182:99 scaffold609 SAMTools SNP 158312 158312 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.24%2C0.021%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C214:99 scaffold609 SAMTools SNP 160158 160158 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1.2e-07%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C201:33 scaffold609 SAMTools SNP 160200 160200 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C193:99 scaffold609 SAMTools SNP 160206 160206 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.001%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C109:99 scaffold609 SAMTools SNP 160480 160480 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold609 SAMTools SNP 161335 161335 71.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold609 SAMTools SNP 187312 187312 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 187342 187342 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold609 SAMTools SNP 204736 204736 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C13%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.13%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C225:99 scaffold609 SAMTools SNP 205219 205219 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold609 SAMTools SNP 205246 205246 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold609 SAMTools SNP 205270 205270 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold609 SAMTools SNP 205357 205357 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold609 SAMTools SNP 205877 205877 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold609 SAMTools SNP 205936 205936 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold609 SAMTools SNP 206166 206166 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold609 SAMTools SNP 206718 206718 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D86.9%3BPV4%3D1%2C0.014%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C118:99 scaffold609 SAMTools SNP 206745 206745 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold609 SAMTools SNP 207134 207134 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold609 SAMTools SNP 207167 207167 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold609 SAMTools SNP 207373 207373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold609 SAMTools SNP 207508 207508 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold609 SAMTools SNP 209175 209175 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold609 SAMTools SNP 209647 209647 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold609 SAMTools SNP 211188 211188 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold609 SAMTools SNP 211305 211305 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold609 SAMTools SNP 211832 211832 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C21%2C0:39 scaffold609 SAMTools SNP 211892 211892 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0099%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold609 SAMTools SNP 212389 212389 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold609 SAMTools SNP 212509 212509 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold609 SAMTools SNP 212927 212927 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold609 SAMTools SNP 212937 212937 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C1%2C11%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.63%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold609 SAMTools SNP 213268 213268 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.21%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C251:99 scaffold609 SAMTools SNP 213278 213278 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.36%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold609 SAMTools SNP 213297 213297 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.029%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold609 SAMTools SNP 215080 215080 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 215163 215163 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold609 SAMTools SNP 215369 215369 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold609 SAMTools SNP 215408 215408 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold609 SAMTools SNP 215882 215882 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold609 SAMTools SNP 216154 216154 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold609 SAMTools SNP 216187 216187 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold609 SAMTools SNP 216568 216568 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold609 SAMTools SNP 216661 216661 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 217092 217092 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold609 SAMTools SNP 217104 217104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold609 SAMTools SNP 227406 227406 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C357%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold609 SAMTools SNP 227424 227424 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C142%2C22%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D3.3e-19%2C1%2C1%2C4.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold609 SAMTools SNP 227601 227601 87.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C2:5 scaffold609 SAMTools SNP 229670 229670 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold609 SAMTools SNP 230877 230877 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00077%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold609 SAMTools SNP 230976 230976 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C35%2C8%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D4.4e-06%2C1%2C1%2C1.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold609 SAMTools SNP 234491 234491 218 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C63%2C0:99 scaffold609 SAMTools SNP 234518 234518 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold609 SAMTools SNP 234855 234855 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold609 SAMTools SNP 250324 250324 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold609 SAMTools SNP 254802 254802 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C30%2C0:57 scaffold609 SAMTools SNP 256509 256509 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C32:35 scaffold609 SAMTools SNP 256563 256563 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold609 SAMTools SNP 257354 257354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold609 SAMTools SNP 258289 258289 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold609 SAMTools SNP 258294 258294 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold609 SAMTools SNP 261537 261537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold609 SAMTools SNP 263571 263571 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold61 SAMTools SNP 3866 3866 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold61 SAMTools SNP 4028 4028 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold61 SAMTools SNP 4250 4250 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 4277 4277 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold61 SAMTools SNP 4586 4586 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold61 SAMTools SNP 6395 6395 48.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold61 SAMTools SNP 6797 6797 48.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold61 SAMTools SNP 22123 22123 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold61 SAMTools SNP 23313 23313 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0059%2C0.00046%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold61 SAMTools SNP 27012 27012 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold61 SAMTools SNP 27143 27143 32.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold61 SAMTools SNP 27161 27161 63.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold61 SAMTools SNP 42699 42699 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold61 SAMTools SNP 43579 43579 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold61 SAMTools SNP 43896 43896 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C0.42%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold61 SAMTools SNP 44655 44655 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold61 SAMTools SNP 44688 44688 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold61 SAMTools SNP 45859 45859 69.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold61 SAMTools SNP 48449 48449 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold61 SAMTools SNP 48509 48509 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 54148 54148 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 55386 55386 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold61 SAMTools SNP 55880 55880 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold61 SAMTools SNP 55952 55952 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold61 SAMTools SNP 58216 58216 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 59085 59085 86.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold61 SAMTools SNP 59106 59106 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 59575 59575 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold61 SAMTools SNP 59618 59618 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold61 SAMTools SNP 59662 59662 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold61 SAMTools SNP 61287 61287 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 63588 63588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold61 SAMTools SNP 64042 64042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold61 SAMTools SNP 64107 64107 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.031%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold61 SAMTools SNP 64801 64801 66.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C6%2C0:10 scaffold61 SAMTools SNP 76051 76051 66.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C6%2C0:10 scaffold61 SAMTools SNP 78254 78254 60.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold61 SAMTools SNP 78567 78567 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 78576 78576 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 78615 78615 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 78631 78631 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 88180 88180 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold61 SAMTools SNP 88249 88249 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold61 SAMTools SNP 88518 88518 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C27%2C0:51 scaffold61 SAMTools SNP 88933 88933 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 88936 88936 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 99328 99328 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold61 SAMTools SNP 99403 99403 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold61 SAMTools SNP 99646 99646 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold61 SAMTools SNP 101503 101503 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold61 SAMTools SNP 106975 106975 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold61 SAMTools SNP 106976 106976 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 132482 132482 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 132507 132507 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold61 SAMTools SNP 133153 133153 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold61 SAMTools SNP 133219 133219 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold61 SAMTools SNP 136720 136720 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold61 SAMTools SNP 164880 164880 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold61 SAMTools SNP 189571 189571 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 189598 189598 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 189630 189630 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold61 SAMTools SNP 191945 191945 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 224687 224687 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold61 SAMTools SNP 247342 247342 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C24%2C0:45 scaffold61 SAMTools SNP 247658 247658 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold61 SAMTools SNP 248135 248135 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold61 SAMTools SNP 263273 263273 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold61 SAMTools SNP 263304 263304 23.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold61 SAMTools SNP 263333 263333 6.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold61 SAMTools SNP 266305 266305 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold61 SAMTools SNP 266477 266477 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 269021 269021 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold61 SAMTools SNP 269073 269073 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 299145 299145 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.0042%2C1.1e-10%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold61 SAMTools SNP 300365 300365 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold61 SAMTools SNP 300522 300522 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold61 SAMTools SNP 300574 300574 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 300575 300575 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold61 SAMTools SNP 301540 301540 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold61 SAMTools SNP 301558 301558 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold61 SAMTools SNP 308634 308634 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold61 SAMTools SNP 309260 309260 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold61 SAMTools SNP 310347 310347 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C15%3BMQ%3D50%3BFQ%3D78.9%3BPV4%3D0.14%2C1.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C110:99 scaffold61 SAMTools SNP 310448 310448 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.52%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C195:99 scaffold61 SAMTools SNP 310713 310713 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C5%3BMQ%3D48%3BFQ%3D24%3BPV4%3D1%2C0.044%2C0.00014%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold61 SAMTools SNP 310899 310899 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold61 SAMTools SNP 311747 311747 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold61 SAMTools SNP 311779 311779 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold61 SAMTools SNP 312006 312006 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold61 SAMTools SNP 313548 313548 69.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C12%2C0:21 scaffold61 SAMTools SNP 315198 315198 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold61 SAMTools SNP 336396 336396 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 344349 344349 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D47%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold61 SAMTools SNP 344377 344377 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 344742 344742 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C188:99 scaffold61 SAMTools SNP 344792 344792 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold61 SAMTools SNP 344853 344853 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 359752 359752 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold61 SAMTools SNP 359767 359767 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold61 SAMTools SNP 360226 360226 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold61 SAMTools SNP 361016 361016 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 361059 361059 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 361649 361649 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold61 SAMTools SNP 361986 361986 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C24%2C0:44 scaffold61 SAMTools SNP 362067 362067 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold61 SAMTools SNP 373542 373542 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold61 SAMTools SNP 382798 382798 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 382827 382827 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold61 SAMTools SNP 383442 383442 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold61 SAMTools SNP 383451 383451 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold61 SAMTools SNP 384908 384908 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 385308 385308 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold61 SAMTools SNP 411569 411569 45 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C4%3BMQ%3D47%3BFQ%3D48%3BPV4%3D0.0079%2C9.5e-08%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C156:78 scaffold61 SAMTools SNP 421324 421324 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 421346 421346 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 421677 421677 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold61 SAMTools SNP 421719 421719 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold61 SAMTools SNP 425696 425696 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold61 SAMTools SNP 425842 425842 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 426304 426304 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold61 SAMTools SNP 426308 426308 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold61 SAMTools SNP 426311 426311 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 426314 426314 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold61 SAMTools SNP 426496 426496 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold61 SAMTools SNP 429366 429366 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 432008 432008 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 432039 432039 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 432813 432813 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 433159 433159 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold61 SAMTools SNP 440494 440494 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 441104 441104 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold61 SAMTools SNP 441162 441162 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 441380 441380 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold61 SAMTools SNP 460702 460702 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C7%2C10%3BMQ%3D31%3BFQ%3D125%3BPV4%3D0.12%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C188:99 scaffold61 SAMTools SNP 460881 460881 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C6%2C0%3BMQ%3D36%3BFQ%3D77%3BPV4%3D1%2C0.024%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C165:99 scaffold61 SAMTools SNP 460887 460887 16.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D21%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C30%2C0%2C30%2C0%2C27:43 scaffold61 SAMTools SNP 461394 461394 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C40%2C9%3BMQ%3D40%3BFQ%3D-70%3BPV4%3D1%2C1%2C0.062%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C43%2C0:83 scaffold61 SAMTools SNP 462178 462178 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C30%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold61 SAMTools SNP 462421 462421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C33%2C47%2C64%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.0044%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold61 SAMTools SNP 462451 462451 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D281%2C23%2C255%2C1%3BMQ%3D43%3BFQ%3D192%3BPV4%3D8.2e-06%2C1%2C2.2e-71%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold61 SAMTools SNP 462713 462713 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D938%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C508%2C0%2C380%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.076%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold61 SAMTools SNP 462984 462984 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.49%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C214:68 scaffold61 SAMTools SNP 462985 462985 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold610 SAMTools SNP 5506 5506 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 5514 5514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 5589 5589 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 101604 101604 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold610 SAMTools SNP 101611 101611 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C140:33 scaffold610 SAMTools SNP 102605 102605 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold610 SAMTools SNP 105177 105177 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold610 SAMTools SNP 105533 105533 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold610 SAMTools SNP 106352 106352 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 106353 106353 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 135790 135790 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold610 SAMTools SNP 135962 135962 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold610 SAMTools SNP 138782 138782 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 150859 150859 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C78%2C0:99 scaffold610 SAMTools SNP 151715 151715 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C1%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C126%2C0:99 scaffold610 SAMTools SNP 151751 151751 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C4%2C38%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C7.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 151967 151967 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C49%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C226%2C0:99 scaffold610 SAMTools SNP 152438 152438 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C22%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold610 SAMTools SNP 152636 152636 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C46%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold610 SAMTools SNP 153074 153074 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.22%2C0.00046%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold610 SAMTools SNP 153080 153080 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.53%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold610 SAMTools SNP 158083 158083 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 158098 158098 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold610 SAMTools SNP 161266 161266 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 171725 171725 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C14%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold610 SAMTools SNP 171776 171776 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold610 SAMTools SNP 171789 171789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold610 SAMTools SNP 194391 194391 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold610 SAMTools SNP 198578 198578 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold610 SAMTools SNP 198616 198616 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C249:99 scaffold610 SAMTools SNP 201266 201266 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold610 SAMTools SNP 201302 201302 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold610 SAMTools SNP 206321 206321 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold610 SAMTools SNP 208380 208380 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C105:33 scaffold610 SAMTools SNP 210461 210461 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold610 SAMTools SNP 210473 210473 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.53%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold610 SAMTools SNP 210503 210503 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.013%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 210542 210542 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.0067%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 212191 212191 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.024%2C0.00035%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold610 SAMTools SNP 212228 212228 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 212309 212309 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold610 SAMTools SNP 213574 213574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold610 SAMTools SNP 213577 213577 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold610 SAMTools SNP 215069 215069 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 218469 218469 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold610 SAMTools SNP 219684 219684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D43%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold610 SAMTools SNP 221025 221025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C17%2C12%3BMQ%3D43%3BFQ%3D225%3BPV4%3D1%2C0.0036%2C0.096%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 222551 222551 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold610 SAMTools SNP 222709 222709 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C3%2C18%3BMQ%3D47%3BFQ%3D205%3BPV4%3D0.23%2C1%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold610 SAMTools SNP 222724 222724 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C49%2C10%2C24%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.32%2C0.37%2C0.047%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 225230 225230 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C7%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 225262 225262 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold610 SAMTools SNP 225298 225298 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold610 SAMTools SNP 227369 227369 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C32%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold610 SAMTools SNP 243923 243923 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C217:99 scaffold610 SAMTools SNP 243929 243929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold610 SAMTools SNP 245488 245488 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold610 SAMTools SNP 257841 257841 9.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold610 SAMTools SNP 257899 257899 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C60%2C0:99 scaffold610 SAMTools SNP 258000 258000 70.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C18%2C0:33 scaffold610 SAMTools SNP 258072 258072 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold610 SAMTools SNP 258084 258084 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C9%2C23%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.00012%2C4.7e-63%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold610 SAMTools SNP 266352 266352 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold610 SAMTools SNP 267171 267171 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 267198 267198 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 267488 267488 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 269123 269123 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.22%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold610 SAMTools SNP 269174 269174 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 278520 278520 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 309123 309123 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold610 SAMTools SNP 309136 309136 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold610 SAMTools SNP 309146 309146 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 313070 313070 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold610 SAMTools SNP 313914 313914 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C174:99 scaffold610 SAMTools SNP 316169 316169 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C1%2C6%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.65%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold610 SAMTools SNP 316190 316190 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C34%2C3%2C20%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.52%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold610 SAMTools SNP 316874 316874 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C20%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 316891 316891 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 317503 317503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 321126 321126 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.17%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold610 SAMTools SNP 321814 321814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C9%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold610 SAMTools SNP 322239 322239 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C57%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold610 SAMTools SNP 324452 324452 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold610 SAMTools SNP 325396 325396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold610 SAMTools SNP 325418 325418 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.52%2C0.011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold610 SAMTools SNP 325758 325758 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold610 SAMTools SNP 326302 326302 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold610 SAMTools SNP 327249 327249 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C0.11%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold610 SAMTools SNP 327463 327463 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 327472 327472 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 327497 327497 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C242:71 scaffold610 SAMTools SNP 327540 327540 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.023%2C2.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold610 SAMTools SNP 338525 338525 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold610 SAMTools SNP 338541 338541 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 339395 339395 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.19%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C212:99 scaffold610 SAMTools SNP 341318 341318 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 341611 341611 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C51%2C0:96 scaffold610 SAMTools SNP 341753 341753 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold610 SAMTools SNP 342179 342179 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold610 SAMTools SNP 344633 344633 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C66%2C0:99 scaffold610 SAMTools SNP 346038 346038 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C14%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.019%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 346627 346627 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold610 SAMTools SNP 347126 347126 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 347190 347190 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold610 SAMTools SNP 347990 347990 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C18%2C0:33 scaffold610 SAMTools SNP 349510 349510 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C0.049%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold610 SAMTools SNP 350094 350094 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C38:31 scaffold610 SAMTools SNP 360190 360190 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold610 SAMTools SNP 361138 361138 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold610 SAMTools SNP 361273 361273 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.54%2C8.3e-11%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold610 SAMTools SNP 361465 361465 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold610 SAMTools SNP 364663 364663 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold610 SAMTools SNP 368982 368982 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 371206 371206 22.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold610 SAMTools SNP 375505 375505 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 375508 375508 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 376621 376621 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 376623 376623 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 377134 377134 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold610 SAMTools SNP 377170 377170 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold610 SAMTools SNP 378368 378368 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold610 SAMTools SNP 378386 378386 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold610 SAMTools SNP 378416 378416 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 378461 378461 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold610 SAMTools SNP 378667 378667 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D53.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C87:84 scaffold610 SAMTools SNP 378688 378688 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D39%3BFQ%3D14.2%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C41:44 scaffold610 SAMTools SNP 378881 378881 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D42%3BFQ%3D58%3BPV4%3D0.49%2C1%2C0.1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C121:88 scaffold610 SAMTools SNP 378888 378888 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C0.27%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C32:35 scaffold610 SAMTools SNP 379489 379489 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 380199 380199 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold610 SAMTools SNP 380896 380896 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold610 SAMTools SNP 380917 380917 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C173:99 scaffold610 SAMTools SNP 381358 381358 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold610 SAMTools SNP 381794 381794 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold610 SAMTools SNP 393583 393583 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C3%2C0:6 scaffold610 SAMTools SNP 394033 394033 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold610 SAMTools SNP 396134 396134 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold610 SAMTools SNP 396647 396647 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold610 SAMTools SNP 396746 396746 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 396764 396764 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold610 SAMTools SNP 401870 401870 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 401885 401885 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold610 SAMTools SNP 403449 403449 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold610 SAMTools SNP 405543 405543 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 412578 412578 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C27%2C0:51 scaffold610 SAMTools SNP 412697 412697 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold610 SAMTools SNP 412698 412698 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold610 SAMTools SNP 415357 415357 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.013%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold610 SAMTools SNP 415432 415432 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C5%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold610 SAMTools SNP 415470 415470 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 416248 416248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C46%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold610 SAMTools SNP 416271 416271 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold610 SAMTools SNP 416290 416290 149 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.47%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold610 SAMTools SNP 419052 419052 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold610 SAMTools SNP 419054 419054 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.34%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold610 SAMTools SNP 419085 419085 181 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C30%2C3%2C197%2C0%2C194:51 scaffold610 SAMTools SNP 419088 419088 125 . . REF=T;ALT=A,C,G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C90%2C72%2C159%2C0%2C150%2C166%2C7%2C82%2C157:33 scaffold610 SAMTools SNP 419957 419957 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 420725 420725 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 420812 420812 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C12%2C12%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.54%2C2.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold610 SAMTools SNP 420839 420839 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C4%2C14%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.34%2C2.4e-10%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold610 SAMTools SNP 420875 420875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 421890 421890 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 422332 422332 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C42%2C5%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.031%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold610 SAMTools SNP 422347 422347 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold610 SAMTools SNP 422796 422796 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C41%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold610 SAMTools SNP 422977 422977 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C221:99 scaffold610 SAMTools SNP 423387 423387 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold610 SAMTools SNP 426766 426766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 426777 426777 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 427432 427432 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold610 SAMTools SNP 427623 427623 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.9e-07%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold610 SAMTools SNP 427630 427630 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C14%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.38%2C7e-15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C209:99 scaffold610 SAMTools SNP 428540 428540 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold610 SAMTools SNP 428708 428708 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold610 SAMTools SNP 431538 431538 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold610 SAMTools SNP 431603 431603 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C3.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C198:99 scaffold610 SAMTools SNP 433245 433245 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 434287 434287 14.7 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold610 SAMTools SNP 434615 434615 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C18%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold610 SAMTools SNP 434865 434865 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C33%2C0:63 scaffold610 SAMTools SNP 435354 435354 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold610 SAMTools SNP 436622 436622 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C24%2C0:45 scaffold610 SAMTools SNP 436889 436889 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold610 SAMTools SNP 436977 436977 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.83%3BPV4%3D1%2C0%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C34:36 scaffold610 SAMTools SNP 437432 437432 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C40%2C1%2C7%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D0.17%2C1%2C1%2C5.6e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C3:6 scaffold610 SAMTools SNP 437466 437466 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C229:99 scaffold610 SAMTools SNP 437677 437677 17.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D43%3BFQ%3D9.23%3BPV4%3D1%2C1.8e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C36:39 scaffold610 SAMTools SNP 437885 437885 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1.3e-05%2C1.1e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C232:46 scaffold610 SAMTools SNP 438118 438118 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.0051%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C35:37 scaffold610 SAMTools SNP 438325 438325 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold610 SAMTools SNP 438872 438872 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0.057%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold610 SAMTools SNP 439337 439337 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold610 SAMTools SNP 439473 439473 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold610 SAMTools SNP 440295 440295 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C108%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C255%2C0:99 scaffold610 SAMTools SNP 440473 440473 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C61%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C205%2C0:99 scaffold610 SAMTools SNP 441043 441043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C271%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 441315 441315 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C255%2C0:99 scaffold610 SAMTools SNP 441832 441832 85 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C30%2C0%2C102%2C4%2C99:57 scaffold610 SAMTools SNP 442150 442150 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C87%2C145%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.14%2C2.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C255%2C0:99 scaffold610 SAMTools SNP 442226 442226 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D441%3BVDB%3D0.0367%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C23:26 scaffold610 SAMTools SNP 442359 442359 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C58%2C72%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.45%2C1.1e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold610 SAMTools SNP 442415 442415 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C15%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C226%2C0:99 scaffold610 SAMTools SNP 444382 444382 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D487%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.1%2C0.002%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold610 SAMTools SNP 444463 444463 19.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D395%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold610 SAMTools SNP 444797 444797 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0268%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D3.54%3BPV4%3D0.2%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C28:31 scaffold610 SAMTools SNP 444865 444865 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C42%2C0:81 scaffold610 SAMTools SNP 444874 444874 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C287%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 444976 444976 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold610 SAMTools SNP 445036 445036 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C69%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 445258 445258 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold610 SAMTools SNP 445284 445284 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold610 SAMTools SNP 446256 446256 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0394%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D1%2C0.005%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C1:4 scaffold610 SAMTools SNP 468894 468894 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 470392 470392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C83%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 470850 470850 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold610 SAMTools SNP 470883 470883 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C4%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold610 SAMTools SNP 471657 471657 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C3%2C15%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.23%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold610 SAMTools SNP 472319 472319 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C7%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 472337 472337 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 473616 473616 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.31%2C0.025%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold610 SAMTools SNP 474072 474072 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.24%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold610 SAMTools SNP 474354 474354 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C47%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold610 SAMTools SNP 474423 474423 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold610 SAMTools SNP 474561 474561 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C129:99 scaffold610 SAMTools SNP 475058 475058 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C5%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.68%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold610 SAMTools SNP 475435 475435 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.047%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 475504 475504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 476052 476052 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 476079 476079 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.21%2C0.27%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold610 SAMTools SNP 476193 476193 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 476486 476486 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold610 SAMTools SNP 477027 477027 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C25%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 477102 477102 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C44%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.034%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 477114 477114 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C44%2C21%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 477751 477751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C27%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 479027 479027 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C190:58 scaffold610 SAMTools SNP 483054 483054 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C26%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 483468 483468 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold610 SAMTools SNP 483492 483492 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C4%2C25%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.18%2C2.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold610 SAMTools SNP 483573 483573 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold610 SAMTools SNP 483580 483580 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold610 SAMTools SNP 483921 483921 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C0.34%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold610 SAMTools SNP 483923 483923 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold610 SAMTools SNP 483948 483948 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.28%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold610 SAMTools SNP 484173 484173 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold610 SAMTools SNP 484290 484290 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold610 SAMTools SNP 484880 484880 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold610 SAMTools SNP 484911 484911 51 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C59%2C23%2C91%2C0%2C73:69 scaffold610 SAMTools SNP 485368 485368 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold610 SAMTools SNP 485736 485736 8.44 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C12%2C38%2C0%2C35:8 scaffold610 SAMTools SNP 486198 486198 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C6%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.64%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold610 SAMTools SNP 486213 486213 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C13%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.0024%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold610 SAMTools SNP 486956 486956 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.28%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold610 SAMTools SNP 487192 487192 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.15%2C0.063%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold610 SAMTools SNP 487550 487550 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C14%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold610 SAMTools SNP 487580 487580 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 487719 487719 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 488379 488379 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold610 SAMTools SNP 489184 489184 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.012%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C154:99 scaffold610 SAMTools SNP 489214 489214 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C166:99 scaffold610 SAMTools SNP 489250 489250 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold610 SAMTools SNP 489271 489271 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.16%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold610 SAMTools SNP 489704 489704 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.015%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C191:54 scaffold610 SAMTools SNP 489870 489870 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 490353 490353 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C17%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold610 SAMTools SNP 490579 490579 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C9.6e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold610 SAMTools SNP 491267 491267 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold610 SAMTools SNP 492190 492190 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold610 SAMTools SNP 492211 492211 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold610 SAMTools SNP 492259 492259 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 492535 492535 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold610 SAMTools SNP 492619 492619 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold610 SAMTools SNP 492863 492863 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C21%2C0:39 scaffold610 SAMTools SNP 492890 492890 74.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C15%2C0:27 scaffold610 SAMTools SNP 492915 492915 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold610 SAMTools SNP 492926 492926 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold610 SAMTools SNP 493111 493111 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.19%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold610 SAMTools SNP 493165 493165 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold610 SAMTools SNP 494058 494058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 494087 494087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 494112 494112 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 494365 494365 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 494649 494649 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold610 SAMTools SNP 495274 495274 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C1%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.065%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold610 SAMTools SNP 495286 495286 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold610 SAMTools SNP 495316 495316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.29%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 495853 495853 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold610 SAMTools SNP 496225 496225 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold610 SAMTools SNP 496243 496243 55.8 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold610 SAMTools SNP 496300 496300 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold610 SAMTools SNP 497479 497479 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold610 SAMTools SNP 497635 497635 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold610 SAMTools SNP 501356 501356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold610 SAMTools SNP 501590 501590 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 502088 502088 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C27%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold610 SAMTools SNP 503379 503379 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold610 SAMTools SNP 503700 503700 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C194:99 scaffold610 SAMTools SNP 503745 503745 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold610 SAMTools SNP 503775 503775 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold610 SAMTools SNP 503971 503971 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold610 SAMTools SNP 504874 504874 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C25%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 504946 504946 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C2.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 504994 504994 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold610 SAMTools SNP 504997 504997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C14%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold610 SAMTools SNP 505595 505595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C26%2C45%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 505812 505812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold610 SAMTools SNP 505846 505846 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C8%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 507341 507341 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C0%2C41%3BMQ%3D50%3BFQ%3D213%3BPV4%3D2.7e-17%2C2.9e-10%2C1%2C8.6e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold610 SAMTools SNP 507636 507636 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C56%2C54%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 508777 508777 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.25%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold610 SAMTools SNP 508798 508798 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold610 SAMTools SNP 510992 510992 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold610 SAMTools SNP 511001 511001 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.017%2C0.036%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold610 SAMTools SNP 511315 511315 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold610 SAMTools SNP 511755 511755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C15%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold610 SAMTools SNP 512179 512179 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C35%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold610 SAMTools SNP 512469 512469 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold610 SAMTools SNP 513035 513035 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C9%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold610 SAMTools SNP 513063 513063 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.053%2C0.43%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold610 SAMTools SNP 522903 522903 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.34%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold610 SAMTools SNP 544825 544825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold610 SAMTools SNP 547542 547542 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C1%2C19%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.62%2C1.4e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold610 SAMTools SNP 660704 660704 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold610 SAMTools SNP 664975 664975 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold610 SAMTools SNP 664992 664992 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold610 SAMTools SNP 665014 665014 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold610 SAMTools SNP 672496 672496 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold610 SAMTools SNP 672980 672980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold610 SAMTools SNP 674649 674649 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44.9%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C72:75 scaffold610 SAMTools SNP 675980 675980 79.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C18%2C0:33 scaffold612 SAMTools SNP 24713 24713 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 26320 26320 56.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold612 SAMTools SNP 30630 30630 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 30646 30646 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 117050 117050 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold612 SAMTools SNP 138314 138314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold612 SAMTools SNP 140560 140560 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 142271 142271 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 144068 144068 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold612 SAMTools SNP 144078 144078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold612 SAMTools SNP 146145 146145 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.075%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold612 SAMTools SNP 149784 149784 221 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C240:99 scaffold612 SAMTools SNP 150116 150116 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 152405 152405 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C31%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 152476 152476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold612 SAMTools SNP 152480 152480 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C70%2C3%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.15%2C7.5e-07%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold612 SAMTools SNP 152760 152760 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C12%2C36%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 152793 152793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C76%2C11%3BMQ%3D50%3BFQ%3D-259%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold612 SAMTools SNP 152838 152838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 152856 152856 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 153162 153162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C33%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold612 SAMTools SNP 153199 153199 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 153687 153687 33.5 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D774%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C16%2C4%2C61%2C0%2C58:21 scaffold612 SAMTools SNP 153767 153767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C96%2C18%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 154152 154152 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C318%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold612 SAMTools SNP 154447 154447 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C63%2C0:99 scaffold612 SAMTools SNP 154448 154448 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C13%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C79:40 scaffold612 SAMTools SNP 156928 156928 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold612 SAMTools SNP 158663 158663 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1.4e-23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C201:59 scaffold612 SAMTools SNP 162573 162573 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C171:70 scaffold612 SAMTools SNP 162574 162574 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C206:51 scaffold612 SAMTools SNP 164200 164200 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C7.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C241:41 scaffold612 SAMTools SNP 164759 164759 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold612 SAMTools SNP 164880 164880 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.68%2C3.3e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold612 SAMTools SNP 164916 164916 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C22%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.16%2C4.8e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold612 SAMTools SNP 165188 165188 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.18%2C0%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C223:61 scaffold612 SAMTools SNP 165823 165823 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C50%3BMQ%3D50%3BFQ%3D-147%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold612 SAMTools SNP 165881 165881 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold612 SAMTools SNP 166018 166018 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 166038 166038 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold612 SAMTools SNP 166958 166958 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C60%2C0:99 scaffold612 SAMTools SNP 167097 167097 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold612 SAMTools SNP 168601 168601 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold612 SAMTools SNP 168643 168643 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold612 SAMTools SNP 169613 169613 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C161:33 scaffold612 SAMTools SNP 170428 170428 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.034%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold612 SAMTools SNP 170464 170464 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C0.16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold612 SAMTools SNP 171851 171851 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold612 SAMTools SNP 171869 171869 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.18%2C0.0017%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C210:94 scaffold612 SAMTools SNP 172223 172223 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C169:99 scaffold612 SAMTools SNP 172513 172513 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C2%2C7%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.15%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold612 SAMTools SNP 172564 172564 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C1%2C9%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.53%2C0.23%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold612 SAMTools SNP 172918 172918 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold612 SAMTools SNP 172959 172959 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold612 SAMTools SNP 173909 173909 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D45%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold612 SAMTools SNP 174472 174472 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C1%3BMQ%3D39%3BFQ%3D64%3BPV4%3D0.19%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C119:94 scaffold612 SAMTools SNP 174511 174511 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold612 SAMTools SNP 175138 175138 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold612 SAMTools SNP 175152 175152 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold612 SAMTools SNP 175183 175183 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold612 SAMTools SNP 175748 175748 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold612 SAMTools SNP 176122 176122 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold612 SAMTools SNP 177960 177960 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C6%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C126%2C0:99 scaffold612 SAMTools SNP 177982 177982 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold612 SAMTools SNP 178340 178340 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold612 SAMTools SNP 181699 181699 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C12%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold612 SAMTools SNP 181734 181734 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C13%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.034%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold612 SAMTools SNP 183109 183109 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C1%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold612 SAMTools SNP 183137 183137 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 183225 183225 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold612 SAMTools SNP 183254 183254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold612 SAMTools SNP 183689 183689 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C9%2C6%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C184:99 scaffold612 SAMTools SNP 184541 184541 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 184567 184567 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C11%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 184603 184603 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C11%2C8%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C3.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold612 SAMTools SNP 186361 186361 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold612 SAMTools SNP 186431 186431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold612 SAMTools SNP 187027 187027 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C45%2C0:87 scaffold612 SAMTools SNP 187565 187565 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0184%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C24%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.015%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold612 SAMTools SNP 187643 187643 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.3%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold612 SAMTools SNP 187793 187793 149 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.58%2C0.097%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold612 SAMTools SNP 187805 187805 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold612 SAMTools SNP 187901 187901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C29%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 188131 188131 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C30%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C174:99 scaffold612 SAMTools SNP 188491 188491 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 189270 189270 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C226:88 scaffold612 SAMTools SNP 189452 189452 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D24%2C26%2C0%2C15%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.00046%2C5.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold612 SAMTools SNP 189512 189512 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C35%2C1%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold612 SAMTools SNP 189914 189914 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C77:40 scaffold612 SAMTools SNP 190742 190742 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C33%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.097%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold612 SAMTools SNP 190941 190941 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C3%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold612 SAMTools SNP 191151 191151 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 191998 191998 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C17%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.16%2C3.6e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold612 SAMTools SNP 192103 192103 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C9.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C190:71 scaffold612 SAMTools SNP 192154 192154 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold612 SAMTools SNP 192497 192497 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold612 SAMTools SNP 192551 192551 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold612 SAMTools SNP 192572 192572 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold612 SAMTools SNP 192586 192586 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold612 SAMTools SNP 193211 193211 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C217:99 scaffold612 SAMTools SNP 193223 193223 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold612 SAMTools SNP 194794 194794 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold612 SAMTools SNP 194859 194859 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold612 SAMTools SNP 195510 195510 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C15%2C31%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.051%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold612 SAMTools SNP 195738 195738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold612 SAMTools SNP 195778 195778 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold612 SAMTools SNP 195852 195852 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C168:34 scaffold612 SAMTools SNP 196229 196229 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C239:99 scaffold612 SAMTools SNP 196394 196394 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C90%2C0:99 scaffold612 SAMTools SNP 197564 197564 21.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D0.45%2C2.2e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C5%2C0:9 scaffold612 SAMTools SNP 200221 200221 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold612 SAMTools SNP 200328 200328 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold612 SAMTools SNP 200595 200595 26.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold612 SAMTools SNP 209183 209183 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold612 SAMTools SNP 230419 230419 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold613 SAMTools SNP 66019 66019 67 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold613 SAMTools SNP 66032 66032 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C61:33 scaffold614 SAMTools SNP 2628 2628 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold614 SAMTools SNP 21749 21749 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C54%2C0:83 scaffold614 SAMTools SNP 62722 62722 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D44%3BFQ%3D26%3BPV4%3D0.51%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold614 SAMTools SNP 62778 62778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D44%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold614 SAMTools SNP 63298 63298 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold614 SAMTools SNP 74008 74008 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C22%2C7%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C0.04%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 74038 74038 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.086%2C0.15%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 75530 75530 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 75539 75539 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C77%2C50%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 75623 75623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C32%2C83%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 76253 76253 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C61%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold614 SAMTools SNP 76302 76302 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C39%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold614 SAMTools SNP 76316 76316 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C29%3BMQ%3D50%3BFQ%3D-83%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C0:99 scaffold614 SAMTools SNP 77465 77465 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 77480 77480 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C0%2C92%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 77830 77830 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C0%2C279%2C24%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00059%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C128:99 scaffold614 SAMTools SNP 82294 82294 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold614 SAMTools SNP 84585 84585 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C79%2C19%2C6%3BMQ%3D50%3BFQ%3D190%3BPV4%3D8.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold614 SAMTools SNP 84726 84726 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C24%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C103:99 scaffold614 SAMTools SNP 86624 86624 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.3%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold614 SAMTools SNP 92990 92990 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0099%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C6.7e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold614 SAMTools SNP 99189 99189 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold614 SAMTools SNP 118091 118091 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D42%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold614 SAMTools SNP 132230 132230 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 132835 132835 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C0%3BMQ%3D48%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold614 SAMTools SNP 133047 133047 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold614 SAMTools SNP 133091 133091 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold614 SAMTools SNP 134728 134728 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold614 SAMTools SNP 135168 135168 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold614 SAMTools SNP 152178 152178 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 153124 153124 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 153227 153227 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 194253 194253 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C0%2C3%3BMQ%3D44%3BFQ%3D23%3BPV4%3D0.23%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold614 SAMTools SNP 195289 195289 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 205385 205385 43.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C2%2C0:5 scaffold614 SAMTools SNP 206554 206554 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold614 SAMTools SNP 209497 209497 52.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold614 SAMTools SNP 209892 209892 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold614 SAMTools SNP 209992 209992 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold614 SAMTools SNP 210802 210802 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold614 SAMTools SNP 211802 211802 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 211940 211940 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold614 SAMTools SNP 215530 215530 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 215877 215877 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 223434 223434 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 223809 223809 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold614 SAMTools SNP 225936 225936 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 226403 226403 55.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold614 SAMTools SNP 226777 226777 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold614 SAMTools SNP 226786 226786 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold614 SAMTools SNP 226912 226912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold614 SAMTools SNP 227323 227323 222 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C49%3BMQ%3D50%3BFQ%3D-116%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C89%2C0%2C215%2C55%2C242:99 scaffold614 SAMTools SNP 227324 227324 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C48%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C62%2C0:99 scaffold614 SAMTools SNP 227717 227717 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold614 SAMTools SNP 235768 235768 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold614 SAMTools SNP 235771 235771 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold614 SAMTools SNP 235822 235822 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold614 SAMTools SNP 235984 235984 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold614 SAMTools SNP 237601 237601 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C235:99 scaffold614 SAMTools SNP 237773 237773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold614 SAMTools SNP 237871 237871 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 237895 237895 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 255170 255170 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold614 SAMTools SNP 255437 255437 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C81%2C0:99 scaffold614 SAMTools SNP 255488 255488 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold614 SAMTools SNP 255832 255832 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 256789 256789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold614 SAMTools SNP 256846 256846 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold614 SAMTools SNP 257402 257402 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D40%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold614 SAMTools SNP 257445 257445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D42%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold614 SAMTools SNP 258944 258944 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold614 SAMTools SNP 262239 262239 143 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C42%2C3%2C164%2C0%2C155:75 scaffold614 SAMTools SNP 262381 262381 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold614 SAMTools SNP 262388 262388 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold614 SAMTools SNP 263791 263791 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C132%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 264196 264196 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold614 SAMTools SNP 270329 270329 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold614 SAMTools SNP 270695 270695 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C48%2C0:93 scaffold614 SAMTools SNP 271944 271944 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold614 SAMTools SNP 272158 272158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold614 SAMTools SNP 272847 272847 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold614 SAMTools SNP 273305 273305 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold614 SAMTools SNP 273688 273688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold614 SAMTools SNP 277497 277497 6.17 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold614 SAMTools SNP 279886 279886 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold614 SAMTools SNP 280050 280050 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold614 SAMTools SNP 284954 284954 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold614 SAMTools SNP 285101 285101 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold614 SAMTools SNP 288435 288435 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold614 SAMTools SNP 293327 293327 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C9.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold614 SAMTools SNP 316420 316420 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 321117 321117 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold614 SAMTools SNP 355357 355357 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C41%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C4.4e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold614 SAMTools SNP 366013 366013 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold614 SAMTools SNP 366525 366525 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.4%2C0.0056%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C112:55 scaffold614 SAMTools SNP 367002 367002 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0306%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.1e-13%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C222:31 scaffold614 SAMTools SNP 376264 376264 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold614 SAMTools SNP 376297 376297 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold614 SAMTools SNP 376453 376453 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.17%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C183:51 scaffold614 SAMTools SNP 377563 377563 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold614 SAMTools SNP 379436 379436 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold614 SAMTools SNP 382856 382856 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C250%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 382882 382882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C237%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold614 SAMTools SNP 383006 383006 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C29%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C0.00014%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C49%2C0:88 scaffold614 SAMTools SNP 383490 383490 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold614 SAMTools SNP 388458 388458 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold614 SAMTools SNP 388461 388461 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold614 SAMTools SNP 388470 388470 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.4%2C1%2C1%2C8.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold614 SAMTools SNP 388821 388821 63.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C21%2C0:39 scaffold614 SAMTools SNP 389057 389057 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold614 SAMTools SNP 389138 389138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C24%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold614 SAMTools SNP 389327 389327 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.017%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 394964 394964 65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.038%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C236:98 scaffold614 SAMTools SNP 394997 394997 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold614 SAMTools SNP 401432 401432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold614 SAMTools SNP 401439 401439 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C250:99 scaffold614 SAMTools SNP 401462 401462 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold614 SAMTools SNP 402217 402217 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0012%2C0.43%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold614 SAMTools SNP 402681 402681 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.011%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold614 SAMTools SNP 402728 402728 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold614 SAMTools SNP 403288 403288 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold614 SAMTools SNP 404882 404882 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold614 SAMTools SNP 404941 404941 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0143%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C253:31 scaffold614 SAMTools SNP 405283 405283 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C20%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.4e-33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold614 SAMTools SNP 413206 413206 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.33%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold614 SAMTools SNP 413313 413313 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 413832 413832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold614 SAMTools SNP 418432 418432 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold614 SAMTools SNP 419035 419035 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold614 SAMTools SNP 438197 438197 106 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold614 SAMTools SNP 438493 438493 11.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold614 SAMTools SNP 451305 451305 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold614 SAMTools SNP 451449 451449 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold614 SAMTools SNP 451484 451484 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold614 SAMTools SNP 452850 452850 11.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold614 SAMTools SNP 453381 453381 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold615 SAMTools SNP 2519 2519 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold615 SAMTools SNP 2520 2520 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold615 SAMTools SNP 5226 5226 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold615 SAMTools SNP 6420 6420 92.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold615 SAMTools SNP 10707 10707 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold615 SAMTools SNP 36012 36012 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold615 SAMTools SNP 36364 36364 22.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold615 SAMTools SNP 40352 40352 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold615 SAMTools SNP 41341 41341 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold615 SAMTools SNP 45865 45865 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold615 SAMTools SNP 45898 45898 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold615 SAMTools SNP 45928 45928 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold615 SAMTools SNP 45941 45941 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold615 SAMTools SNP 46403 46403 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold615 SAMTools SNP 46490 46490 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C3:6 scaffold615 SAMTools SNP 46813 46813 144 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold615 SAMTools SNP 46959 46959 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.077%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold615 SAMTools SNP 47000 47000 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.035%2C0.47%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold615 SAMTools SNP 47559 47559 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold615 SAMTools SNP 47560 47560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold615 SAMTools SNP 55839 55839 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold615 SAMTools SNP 56980 56980 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold615 SAMTools SNP 56992 56992 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 3174 3174 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 25133 25133 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold616 SAMTools SNP 31464 31464 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.14%2C0.0027%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C184:48 scaffold616 SAMTools SNP 32028 32028 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C15%2C0:27 scaffold616 SAMTools SNP 33925 33925 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.43%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C12:15 scaffold616 SAMTools SNP 34310 34310 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 34334 34334 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 34609 34609 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C15%2C0:27 scaffold616 SAMTools SNP 34969 34969 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold616 SAMTools SNP 35350 35350 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold616 SAMTools SNP 35392 35392 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold616 SAMTools SNP 36118 36118 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 36367 36367 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold616 SAMTools SNP 36377 36377 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 36773 36773 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 36845 36845 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold616 SAMTools SNP 37195 37195 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 38076 38076 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 52599 52599 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold616 SAMTools SNP 52614 52614 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold616 SAMTools SNP 53322 53322 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.56%3BPV4%3D1%2C5.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C26:29 scaffold616 SAMTools SNP 55682 55682 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 56049 56049 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold616 SAMTools SNP 56067 56067 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold616 SAMTools SNP 56078 56078 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold616 SAMTools SNP 56705 56705 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold616 SAMTools SNP 56717 56717 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold616 SAMTools SNP 56747 56747 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold616 SAMTools SNP 58763 58763 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 58779 58779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 59568 59568 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold616 SAMTools SNP 59785 59785 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 76300 76300 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold616 SAMTools SNP 76891 76891 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold616 SAMTools SNP 77720 77720 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C240:99 scaffold616 SAMTools SNP 77726 77726 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold616 SAMTools SNP 77747 77747 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold616 SAMTools SNP 77775 77775 13.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold616 SAMTools SNP 78504 78504 77.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold616 SAMTools SNP 78519 78519 61.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold616 SAMTools SNP 81240 81240 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 81261 81261 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold616 SAMTools SNP 81289 81289 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C243:99 scaffold616 SAMTools SNP 82226 82226 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold616 SAMTools SNP 82325 82325 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold616 SAMTools SNP 82834 82834 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold616 SAMTools SNP 83008 83008 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C193:99 scaffold616 SAMTools SNP 83043 83043 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C216:99 scaffold616 SAMTools SNP 83134 83134 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.00061%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 85870 85870 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold616 SAMTools SNP 85893 85893 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold616 SAMTools SNP 89275 89275 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C32%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C201:99 scaffold616 SAMTools SNP 89284 89284 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C248:99 scaffold616 SAMTools SNP 89608 89608 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C248:99 scaffold616 SAMTools SNP 89617 89617 205 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C14%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.36%2C0.23%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C217:99 scaffold616 SAMTools SNP 89721 89721 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold616 SAMTools SNP 89941 89941 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold616 SAMTools SNP 89950 89950 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold616 SAMTools SNP 90174 90174 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C18%2C0:33 scaffold616 SAMTools SNP 90191 90191 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold616 SAMTools SNP 90445 90445 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold616 SAMTools SNP 91803 91803 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold616 SAMTools SNP 91933 91933 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0061%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold616 SAMTools SNP 92306 92306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold616 SAMTools SNP 92611 92611 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 94434 94434 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C228:99 scaffold616 SAMTools SNP 94449 94449 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C99:99 scaffold616 SAMTools SNP 94452 94452 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold616 SAMTools SNP 94801 94801 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 173405 173405 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C30%2C0:57 scaffold616 SAMTools SNP 173912 173912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold616 SAMTools SNP 174316 174316 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold616 SAMTools SNP 174355 174355 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold616 SAMTools SNP 178878 178878 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold616 SAMTools SNP 179127 179127 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold616 SAMTools SNP 179160 179160 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold616 SAMTools SNP 180698 180698 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold616 SAMTools SNP 180720 180720 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold616 SAMTools SNP 181414 181414 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C88:37 scaffold616 SAMTools SNP 184660 184660 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold616 SAMTools SNP 184672 184672 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold616 SAMTools SNP 184713 184713 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C0%3BMQ%3D36%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C0.00046%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C207:28 scaffold616 SAMTools SNP 185009 185009 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D44%3BFQ%3D38%3BPV4%3D1%2C1%2C0.0026%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C231:68 scaffold616 SAMTools SNP 185051 185051 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C4%3BMQ%3D46%3BFQ%3D17.1%3BPV4%3D1%2C0.00015%2C0.00023%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold616 SAMTools SNP 185135 185135 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.12%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold616 SAMTools SNP 185897 185897 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold616 SAMTools SNP 186685 186685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold616 SAMTools SNP 186751 186751 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C9%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 186924 186924 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C2%2C5%3BMQ%3D47%3BFQ%3D168%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold616 SAMTools SNP 187980 187980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D47%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold616 SAMTools SNP 188016 188016 139 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C9%3BMQ%3D47%3BFQ%3D142%3BPV4%3D1%2C0.3%2C0.45%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold616 SAMTools SNP 190952 190952 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D46%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.17%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold616 SAMTools SNP 190956 190956 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0.0042%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold616 SAMTools SNP 191347 191347 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C34:37 scaffold616 SAMTools SNP 191422 191422 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold616 SAMTools SNP 192578 192578 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.63%2C1.4e-22%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold616 SAMTools SNP 192668 192668 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C18%2C37%2C37%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.00042%2C2e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold616 SAMTools SNP 192830 192830 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C37%2C12%2C2%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0024%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold616 SAMTools SNP 195506 195506 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 197506 197506 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C18%2C0:33 scaffold616 SAMTools SNP 199203 199203 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold616 SAMTools SNP 203553 203553 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 205739 205739 157 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C26%2C0%3BMQ%3D42%3BFQ%3D154%3BPV4%3D1%2C7.4e-06%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C182:99 scaffold616 SAMTools SNP 205782 205782 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7851%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4021%2C0%2C1714%2C0%3BMQ%3D44%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C3.7e-97;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold616 SAMTools SNP 209471 209471 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3831%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C101%2C3620%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold616 SAMTools SNP 209790 209790 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3416%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C1422%2C34%2C1894%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-06%2C1%2C1%2C6.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 209796 209796 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3412%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C1896%2C63%2C1419%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C0.29%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 209841 209841 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C80%2C25%3BMQ%3D50%3BFQ%3D-235%3BPV4%3D0.26%2C1%2C1%2C2.3e-17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold616 SAMTools SNP 209894 209894 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1163%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D739%2C36%2C257%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-13%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 210417 210417 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2151%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1455%2C109%2C240%2C115%3BMQ%3D50%3BFQ%3D132%3BPV4%3D2.5e-33%2C1%2C1%2C2.2e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold616 SAMTools SNP 210447 210447 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2909%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D370%2C748%2C635%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-157%2C4.7e-149%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 210474 210474 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2485%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D361%2C733%2C299%2C20%3BMQ%3D50%3BFQ%3D119%3BPV4%3D8.6e-92%2C4e-10%2C1%2C4.2e-270;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold616 SAMTools SNP 210518 210518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1778%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C13%2C34%2C1363%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold616 SAMTools SNP 213065 213065 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1683%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C249%2C33%2C1400%3BMQ%3D50%3BFQ%3D-189%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C162%2C0:99 scaffold616 SAMTools SNP 213990 213990 32.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D781%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold616 SAMTools SNP 214028 214028 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.0017%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C197:71 scaffold616 SAMTools SNP 217150 217150 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.24%2C0.42%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold616 SAMTools SNP 217182 217182 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C207:99 scaffold616 SAMTools SNP 217452 217452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold616 SAMTools SNP 219024 219024 198 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C14%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.14%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold616 SAMTools SNP 219052 219052 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.36%2C1%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C214:99 scaffold616 SAMTools SNP 220666 220666 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C243:99 scaffold616 SAMTools SNP 220687 220687 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C160:99 scaffold616 SAMTools SNP 220696 220696 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold616 SAMTools SNP 224333 224333 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold616 SAMTools SNP 224686 224686 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold616 SAMTools SNP 224830 224830 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C74%2C30%3BMQ%3D48%3BFQ%3D-267%3BPV4%3D1%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C240%2C0:99 scaffold616 SAMTools SNP 225714 225714 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold616 SAMTools SNP 226541 226541 28.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold616 SAMTools SNP 228285 228285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C9%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.14%2C0.14%2C0.014%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 228897 228897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C56%2C20%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.6e-13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 228975 228975 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C104%2C45%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 230568 230568 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C197%2C2%2C154%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 230583 230583 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D608%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C290%2C4%2C309%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 235832 235832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold616 SAMTools SNP 235846 235846 71 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.07%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold616 SAMTools SNP 238254 238254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold616 SAMTools SNP 238296 238296 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.17%2C0.28%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold616 SAMTools SNP 238320 238320 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.63%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold616 SAMTools SNP 238765 238765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold616 SAMTools SNP 238821 238821 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C16%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold616 SAMTools SNP 238989 238989 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 239013 239013 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.092%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 239068 239068 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 239865 239865 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D133%3BPV4%3D4.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold616 SAMTools SNP 239988 239988 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C2%2C12%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.17%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold616 SAMTools SNP 240021 240021 49.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold616 SAMTools SNP 240263 240263 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C1%2C13%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.3%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C247:99 scaffold616 SAMTools SNP 240287 240287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold616 SAMTools SNP 242685 242685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold616 SAMTools SNP 242973 242973 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 244727 244727 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 246882 246882 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 254690 254690 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 255318 255318 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold616 SAMTools SNP 255368 255368 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold616 SAMTools SNP 255541 255541 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold616 SAMTools SNP 255808 255808 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C30%2C0:57 scaffold616 SAMTools SNP 258944 258944 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C90%2C0:99 scaffold616 SAMTools SNP 259284 259284 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 259823 259823 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold616 SAMTools SNP 259948 259948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold616 SAMTools SNP 260002 260002 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold616 SAMTools SNP 260042 260042 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold616 SAMTools SNP 260332 260332 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold616 SAMTools SNP 260377 260377 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold616 SAMTools SNP 261109 261109 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 261112 261112 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold616 SAMTools SNP 261474 261474 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold616 SAMTools SNP 262063 262063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C4%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold616 SAMTools SNP 262943 262943 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold616 SAMTools SNP 262955 262955 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold616 SAMTools SNP 263431 263431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold616 SAMTools SNP 263714 263714 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold616 SAMTools SNP 266902 266902 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 267184 267184 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 267886 267886 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.26%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold616 SAMTools SNP 268296 268296 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold616 SAMTools SNP 268660 268660 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold616 SAMTools SNP 268665 268665 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 268723 268723 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold616 SAMTools SNP 268751 268751 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold616 SAMTools SNP 270529 270529 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 270671 270671 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 271479 271479 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 271533 271533 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 271548 271548 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 272144 272144 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.022%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C226:33 scaffold616 SAMTools SNP 273966 273966 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 273975 273975 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 274059 274059 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold616 SAMTools SNP 278863 278863 20.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold616 SAMTools SNP 278984 278984 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 279191 279191 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 279206 279206 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold616 SAMTools SNP 279702 279702 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold616 SAMTools SNP 279741 279741 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C198:66 scaffold616 SAMTools SNP 279997 279997 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 280112 280112 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 281499 281499 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C24%2C0:45 scaffold616 SAMTools SNP 282339 282339 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold616 SAMTools SNP 282849 282849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold616 SAMTools SNP 282921 282921 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C7%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold616 SAMTools SNP 283233 283233 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C51%2C0:99 scaffold616 SAMTools SNP 284146 284146 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold616 SAMTools SNP 293776 293776 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 293940 293940 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold616 SAMTools SNP 293947 293947 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 296961 296961 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold616 SAMTools SNP 297000 297000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold616 SAMTools SNP 297024 297024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold616 SAMTools SNP 298137 298137 195 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C27%2C0%2C212%2C1%2C209:51 scaffold616 SAMTools SNP 301480 301480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold616 SAMTools SNP 301486 301486 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold616 SAMTools SNP 301603 301603 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C33%2C0:63 scaffold616 SAMTools SNP 301645 301645 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold616 SAMTools SNP 302000 302000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold616 SAMTools SNP 302045 302045 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold616 SAMTools SNP 302069 302069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold616 SAMTools SNP 305046 305046 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold616 SAMTools SNP 306016 306016 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold616 SAMTools SNP 306087 306087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C34%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold616 SAMTools SNP 306440 306440 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C28%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold616 SAMTools SNP 306865 306865 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold616 SAMTools SNP 309084 309084 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold616 SAMTools SNP 309087 309087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold616 SAMTools SNP 335092 335092 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold616 SAMTools SNP 337601 337601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C68%3BMQ%3D50%3BFQ%3D-197%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C170%2C0:99 scaffold616 SAMTools SNP 339001 339001 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold616 SAMTools SNP 339073 339073 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.065%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold616 SAMTools SNP 339439 339439 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold616 SAMTools SNP 340357 340357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C18%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold616 SAMTools SNP 340602 340602 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C49%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold616 SAMTools SNP 348515 348515 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold616 SAMTools SNP 348628 348628 33.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold616 SAMTools SNP 369552 369552 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold616 SAMTools SNP 374822 374822 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold616 SAMTools SNP 375468 375468 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold616 SAMTools SNP 422286 422286 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold616 SAMTools SNP 424140 424140 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.018%2C5.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C158:28 scaffold616 SAMTools SNP 424193 424193 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D15%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold616 SAMTools SNP 424979 424979 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold616 SAMTools SNP 425948 425948 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold617 SAMTools SNP 5042 5042 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold617 SAMTools SNP 58603 58603 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D48.3%3BPV4%3D1%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold617 SAMTools SNP 58616 58616 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold617 SAMTools SNP 58831 58831 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C118:36 scaffold617 SAMTools SNP 58871 58871 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold617 SAMTools SNP 59249 59249 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold617 SAMTools SNP 59283 59283 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold617 SAMTools SNP 59431 59431 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold617 SAMTools SNP 59433 59433 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold617 SAMTools SNP 59451 59451 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold617 SAMTools SNP 59506 59506 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold617 SAMTools SNP 59975 59975 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold617 SAMTools SNP 74277 74277 58.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold617 SAMTools SNP 74476 74476 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 91347 91347 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold617 SAMTools SNP 107149 107149 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold617 SAMTools SNP 131102 131102 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.2%2C0.013%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold617 SAMTools SNP 131446 131446 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold617 SAMTools SNP 132279 132279 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 132280 132280 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 141195 141195 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold617 SAMTools SNP 141565 141565 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold617 SAMTools SNP 141792 141792 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold617 SAMTools SNP 142017 142017 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C16%2C84%2C10%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.41%2C2.5e-137%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold617 SAMTools SNP 142253 142253 62.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold617 SAMTools SNP 143784 143784 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C0.19%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold617 SAMTools SNP 144241 144241 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold617 SAMTools SNP 145862 145862 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold617 SAMTools SNP 146284 146284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold617 SAMTools SNP 146318 146318 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold617 SAMTools SNP 147838 147838 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold617 SAMTools SNP 148526 148526 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold617 SAMTools SNP 148747 148747 16.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold617 SAMTools SNP 152014 152014 197 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold617 SAMTools SNP 152064 152064 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.52%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C179:99 scaffold617 SAMTools SNP 153457 153457 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C0.022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C154:99 scaffold617 SAMTools SNP 155555 155555 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C4%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold617 SAMTools SNP 157049 157049 196 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold617 SAMTools SNP 157180 157180 50.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold617 SAMTools SNP 159259 159259 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C12%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C217%2C0:99 scaffold617 SAMTools SNP 159478 159478 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C4%2C36%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C4.6e-53%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold617 SAMTools SNP 159522 159522 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C1%2C34%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.8e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold617 SAMTools SNP 163842 163842 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C24%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C87%2C0:99 scaffold617 SAMTools SNP 164725 164725 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold617 SAMTools SNP 166867 166867 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 166889 166889 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold617 SAMTools SNP 167428 167428 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C74:36 scaffold617 SAMTools SNP 168331 168331 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold617 SAMTools SNP 168400 168400 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold617 SAMTools SNP 168550 168550 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C295%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold617 SAMTools SNP 171143 171143 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C96%2C3%2C39%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.00066%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold617 SAMTools SNP 174756 174756 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold617 SAMTools SNP 174766 174766 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C79:43 scaffold617 SAMTools SNP 174794 174794 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold617 SAMTools SNP 175066 175066 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold617 SAMTools SNP 177484 177484 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold617 SAMTools SNP 177662 177662 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C127:47 scaffold617 SAMTools SNP 179840 179840 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C49%2C156%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.4e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 183048 183048 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 183103 183103 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 183743 183743 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold617 SAMTools SNP 184608 184608 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold617 SAMTools SNP 185857 185857 25.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold617 SAMTools SNP 188381 188381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C225%2C12%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.21%2C0.031%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 189072 189072 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C255%2C0:99 scaffold617 SAMTools SNP 189906 189906 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C40%2C18%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D8.1e-06%2C1%2C1%2C1.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold617 SAMTools SNP 190665 190665 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold617 SAMTools SNP 195119 195119 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C36%2C0:69 scaffold617 SAMTools SNP 199410 199410 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold617 SAMTools SNP 199423 199423 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold617 SAMTools SNP 199446 199446 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold617 SAMTools SNP 199586 199586 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 205272 205272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 205876 205876 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.05%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold617 SAMTools SNP 206466 206466 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0144%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.53%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold617 SAMTools SNP 206492 206492 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.26%2C0.019%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold617 SAMTools SNP 206866 206866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold617 SAMTools SNP 207820 207820 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold617 SAMTools SNP 208076 208076 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold617 SAMTools SNP 208272 208272 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold617 SAMTools SNP 208286 208286 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.21%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold617 SAMTools SNP 208678 208678 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C42%2C0:81 scaffold617 SAMTools SNP 211238 211238 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold617 SAMTools SNP 211243 211243 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold617 SAMTools SNP 211255 211255 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold617 SAMTools SNP 211619 211619 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C27:31 scaffold617 SAMTools SNP 211678 211678 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold617 SAMTools SNP 212103 212103 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 212443 212443 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 213296 213296 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 213318 213318 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 214292 214292 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 214353 214353 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold617 SAMTools SNP 214490 214490 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold617 SAMTools SNP 214592 214592 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C18%2C0:33 scaffold617 SAMTools SNP 214601 214601 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold617 SAMTools SNP 215129 215129 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold617 SAMTools SNP 215201 215201 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold617 SAMTools SNP 215597 215597 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold617 SAMTools SNP 216994 216994 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0023%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold617 SAMTools SNP 216998 216998 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold617 SAMTools SNP 217022 217022 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C137:99 scaffold617 SAMTools SNP 217267 217267 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold617 SAMTools SNP 218340 218340 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold617 SAMTools SNP 218507 218507 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold617 SAMTools SNP 218546 218546 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.4%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold617 SAMTools SNP 218781 218781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold617 SAMTools SNP 218957 218957 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold617 SAMTools SNP 219008 219008 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold617 SAMTools SNP 219599 219599 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold617 SAMTools SNP 219600 219600 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C0.084%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold617 SAMTools SNP 219785 219785 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold617 SAMTools SNP 220087 220087 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold617 SAMTools SNP 220114 220114 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold617 SAMTools SNP 220842 220842 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C23%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold617 SAMTools SNP 221573 221573 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C22%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold617 SAMTools SNP 222076 222076 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold617 SAMTools SNP 223058 223058 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold617 SAMTools SNP 223106 223106 202 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold617 SAMTools SNP 224286 224286 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0039%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold617 SAMTools SNP 224595 224595 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.061%2C6.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold617 SAMTools SNP 224623 224623 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold617 SAMTools SNP 224816 224816 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.22%2C0.19%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold617 SAMTools SNP 225025 225025 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1.5e-23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C224:99 scaffold617 SAMTools SNP 225680 225680 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C96%2C0:99 scaffold617 SAMTools SNP 227825 227825 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.078%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold617 SAMTools SNP 228494 228494 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 228632 228632 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold617 SAMTools SNP 229293 229293 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.4%2C7.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold617 SAMTools SNP 231794 231794 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold617 SAMTools SNP 240607 240607 65.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold617 SAMTools SNP 242521 242521 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C4%2C56%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.28%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold617 SAMTools SNP 242552 242552 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C0%2C3%3BMQ%3D37%3BFQ%3D14.2%3BPV4%3D0.09%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold617 SAMTools SNP 242651 242651 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C37%2C31%3BMQ%3D39%3BFQ%3D41%3BPV4%3D0.018%2C0.018%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold617 SAMTools SNP 243844 243844 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C28%2C9%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold617 SAMTools SNP 243850 243850 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C9%2C1%3BMQ%3D49%3BFQ%3D124%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold617 SAMTools SNP 243955 243955 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 244749 244749 157 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C30%2C0:57 scaffold617 SAMTools SNP 245278 245278 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold617 SAMTools SNP 247664 247664 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold617 SAMTools SNP 247668 247668 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0055%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold617 SAMTools SNP 247671 247671 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold617 SAMTools SNP 256544 256544 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold617 SAMTools SNP 256822 256822 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold617 SAMTools SNP 257819 257819 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold617 SAMTools SNP 258201 258201 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold617 SAMTools SNP 258205 258205 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C0.41%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold617 SAMTools SNP 261255 261255 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C20%2C25%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.47%2C2.2e-70%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold617 SAMTools SNP 261276 261276 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C29%2C20%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.64%2C2.3e-56%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold617 SAMTools SNP 261288 261288 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold617 SAMTools SNP 268649 268649 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C72%2C0:99 scaffold617 SAMTools SNP 279855 279855 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 280449 280449 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 280478 280478 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C5%2C14%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.025%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold617 SAMTools SNP 280533 280533 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 282620 282620 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold617 SAMTools SNP 284065 284065 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0037%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold617 SAMTools SNP 284497 284497 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold617 SAMTools SNP 285717 285717 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C24%2C0:45 scaffold617 SAMTools SNP 285845 285845 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 286207 286207 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C8%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold617 SAMTools SNP 287749 287749 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C21%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 287872 287872 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C54%2C24%2C114%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C0.007%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 288359 288359 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C92%2C0%2C21%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold617 SAMTools SNP 289830 289830 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold617 SAMTools SNP 289835 289835 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold617 SAMTools SNP 289865 289865 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold617 SAMTools SNP 290559 290559 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold617 SAMTools SNP 290735 290735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C30%3BMQ%3D44%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold617 SAMTools SNP 291117 291117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold617 SAMTools SNP 291510 291510 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C6.4e-06%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 291585 291585 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C10%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold617 SAMTools SNP 292471 292471 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold617 SAMTools SNP 292540 292540 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold617 SAMTools SNP 292795 292795 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C38%2C18%2C31%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1.2e-86%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold617 SAMTools SNP 292903 292903 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C53%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold617 SAMTools SNP 293540 293540 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.34%2C1%2C1.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold617 SAMTools SNP 294618 294618 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold617 SAMTools SNP 294909 294909 28.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold617 SAMTools SNP 298063 298063 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold617 SAMTools SNP 298177 298177 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold617 SAMTools SNP 300899 300899 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C6%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.43%2C0.11%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold617 SAMTools SNP 300926 300926 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C4%3BMQ%3D48%3BFQ%3D155%3BPV4%3D1%2C0.39%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C182:99 scaffold617 SAMTools SNP 301541 301541 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold617 SAMTools SNP 319527 319527 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold617 SAMTools SNP 319998 319998 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold617 SAMTools SNP 321170 321170 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold617 SAMTools SNP 321188 321188 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 1140 1140 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 1157 1157 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold619 SAMTools SNP 1176 1176 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold619 SAMTools SNP 56644 56644 43.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold619 SAMTools SNP 80955 80955 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 81019 81019 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 81200 81200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold619 SAMTools SNP 81240 81240 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 85354 85354 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 85387 85387 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 93400 93400 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 94892 94892 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C36%2C0:69 scaffold619 SAMTools SNP 100432 100432 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold619 SAMTools SNP 150734 150734 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold619 SAMTools SNP 150762 150762 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold619 SAMTools SNP 150782 150782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 152027 152027 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold619 SAMTools SNP 152057 152057 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold619 SAMTools SNP 152084 152084 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C30%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold619 SAMTools SNP 153373 153373 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold619 SAMTools SNP 153388 153388 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold619 SAMTools SNP 154756 154756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C7%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold619 SAMTools SNP 154838 154838 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C108%2C0:99 scaffold619 SAMTools SNP 154852 154852 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C99%2C0:99 scaffold619 SAMTools SNP 163284 163284 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 176781 176781 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold619 SAMTools SNP 176821 176821 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 176866 176866 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 179005 179005 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold619 SAMTools SNP 180211 180211 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 183614 183614 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0263%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold619 SAMTools SNP 183626 183626 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.35%2C0.017%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold619 SAMTools SNP 193966 193966 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.09%2C8.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold619 SAMTools SNP 194585 194585 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.014%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold619 SAMTools SNP 194613 194613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C18%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 195892 195892 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.015%2C2.9e-07%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold619 SAMTools SNP 207754 207754 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C43%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold619 SAMTools SNP 207804 207804 6.79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold619 SAMTools SNP 207885 207885 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.025%2C1%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold619 SAMTools SNP 208280 208280 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.44%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C209:99 scaffold619 SAMTools SNP 208340 208340 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold619 SAMTools SNP 208364 208364 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold619 SAMTools SNP 209373 209373 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C18%2C0:33 scaffold619 SAMTools SNP 210021 210021 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold619 SAMTools SNP 210552 210552 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold619 SAMTools SNP 210567 210567 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold619 SAMTools SNP 210627 210627 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold619 SAMTools SNP 210652 210652 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold619 SAMTools SNP 211206 211206 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 211933 211933 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold619 SAMTools SNP 212084 212084 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold619 SAMTools SNP 212247 212247 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold619 SAMTools SNP 213968 213968 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold619 SAMTools SNP 213984 213984 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold619 SAMTools SNP 214150 214150 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold619 SAMTools SNP 215419 215419 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold619 SAMTools SNP 216112 216112 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold619 SAMTools SNP 216160 216160 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold619 SAMTools SNP 216277 216277 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 217053 217053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C24%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C8.3e-23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 218956 218956 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold619 SAMTools SNP 219739 219739 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 222156 222156 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C8.1e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C174:59 scaffold619 SAMTools SNP 227044 227044 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C3%3BMQ%3D35%3BFQ%3D65%3BPV4%3D0.24%2C1%2C0.14%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C92:95 scaffold619 SAMTools SNP 228399 228399 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D36%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold619 SAMTools SNP 229101 229101 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00042%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold619 SAMTools SNP 229122 229122 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold619 SAMTools SNP 230274 230274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold619 SAMTools SNP 230289 230289 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold619 SAMTools SNP 230314 230314 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold619 SAMTools SNP 232610 232610 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C36%2C11%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D6.3e-07%2C2e-11%2C1%2C7.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold619 SAMTools SNP 232635 232635 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C24%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0012%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold619 SAMTools SNP 248672 248672 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold619 SAMTools SNP 249196 249196 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold619 SAMTools SNP 249735 249735 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold619 SAMTools SNP 249765 249765 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold619 SAMTools SNP 250895 250895 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.25%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C85:49 scaffold619 SAMTools SNP 250905 250905 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C27:29 scaffold619 SAMTools SNP 250929 250929 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 250932 250932 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 250935 250935 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C42:45 scaffold619 SAMTools SNP 251491 251491 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold619 SAMTools SNP 251518 251518 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold619 SAMTools SNP 266663 266663 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold619 SAMTools SNP 267399 267399 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C10%2C2%3BMQ%3D46%3BFQ%3D192%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold619 SAMTools SNP 269248 269248 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C5%2C12%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.48%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 269263 269263 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C2%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.078%2C1%2C0.37%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 269617 269617 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D48%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C33%2C0:63 scaffold619 SAMTools SNP 269686 269686 184 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C1%2C9%3BMQ%3D49%3BFQ%3D187%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold619 SAMTools SNP 270594 270594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C18%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.58%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 270633 270633 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C19%2C8%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.04%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold619 SAMTools SNP 271715 271715 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C17%2C12%2C3%3BMQ%3D46%3BFQ%3D124%3BPV4%3D0.21%2C0.29%2C3.8e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold619 SAMTools SNP 271754 271754 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C68%2C10%3BMQ%3D48%3BFQ%3D225%3BPV4%3D5.6e-07%2C7.3e-22%2C0.28%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 271814 271814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C18%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 272116 272116 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C16%3BMQ%3D49%3BFQ%3D143%3BPV4%3D1%2C1%2C0.087%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold619 SAMTools SNP 272117 272117 153 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C69%2C183%2C0%2C177:33 scaffold619 SAMTools SNP 272147 272147 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.03%2C2.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold619 SAMTools SNP 272186 272186 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold619 SAMTools SNP 273291 273291 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold619 SAMTools SNP 273429 273429 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold619 SAMTools SNP 273851 273851 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C120%2C0:99 scaffold619 SAMTools SNP 275965 275965 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold619 SAMTools SNP 276385 276385 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold619 SAMTools SNP 276510 276510 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 279161 279161 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold619 SAMTools SNP 279205 279205 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 280174 280174 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 280224 280224 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold619 SAMTools SNP 280232 280232 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold619 SAMTools SNP 280894 280894 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 280953 280953 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 281008 281008 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold619 SAMTools SNP 281808 281808 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 281813 281813 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 281845 281845 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 284828 284828 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00039%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C124:39 scaffold619 SAMTools SNP 288420 288420 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold619 SAMTools SNP 288450 288450 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.00033%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold619 SAMTools SNP 288949 288949 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C160:99 scaffold619 SAMTools SNP 288979 288979 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold619 SAMTools SNP 288994 288994 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.045%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold619 SAMTools SNP 289647 289647 104 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold619 SAMTools SNP 291639 291639 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold619 SAMTools SNP 291648 291648 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold619 SAMTools SNP 291756 291756 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 292252 292252 22.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold619 SAMTools SNP 292273 292273 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold619 SAMTools SNP 292285 292285 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold619 SAMTools SNP 294788 294788 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold619 SAMTools SNP 294846 294846 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C236:99 scaffold619 SAMTools SNP 295147 295147 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C0%3BMQ%3D40%3BFQ%3D14.2%3BPV4%3D1%2C0.0016%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C243:43 scaffold619 SAMTools SNP 295166 295166 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 298904 298904 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C4%2C8%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 299635 299635 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 300054 300054 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C14%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold619 SAMTools SNP 300097 300097 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C18%2C7%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.091%2C0.35%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold619 SAMTools SNP 303675 303675 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C6%2C93%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.16%2C3.3e-118%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold619 SAMTools SNP 304476 304476 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold619 SAMTools SNP 311469 311469 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold619 SAMTools SNP 312402 312402 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold619 SAMTools SNP 312457 312457 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold619 SAMTools SNP 312724 312724 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold619 SAMTools SNP 312908 312908 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C79:82 scaffold619 SAMTools SNP 313201 313201 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold619 SAMTools SNP 313399 313399 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold619 SAMTools SNP 313628 313628 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold619 SAMTools SNP 313630 313630 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold619 SAMTools SNP 314013 314013 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold619 SAMTools SNP 314163 314163 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 314182 314182 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 315484 315484 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold619 SAMTools SNP 316625 316625 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 318419 318419 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C182:36 scaffold619 SAMTools SNP 319541 319541 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 322672 322672 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C4.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C213:65 scaffold619 SAMTools SNP 322673 322673 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C193:65 scaffold619 SAMTools SNP 322720 322720 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D666%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D508%2C18%2C140%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.019%2C1%2C1%2C1.5e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold619 SAMTools SNP 323561 323561 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C100%2C3%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-15%2C1%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 323592 323592 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C11%2C1%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D2.9e-10%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold619 SAMTools SNP 327294 327294 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold619 SAMTools SNP 330535 330535 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.69%2C1.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold619 SAMTools SNP 330786 330786 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 330802 330802 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 331725 331725 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C161:72 scaffold619 SAMTools SNP 331746 331746 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.32%2C0.047%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C237:99 scaffold619 SAMTools SNP 332049 332049 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 333790 333790 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold619 SAMTools SNP 335599 335599 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C21%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0063%2C1.3e-10%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold619 SAMTools SNP 335661 335661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 339494 339494 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C13%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.49%2C0.017%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold619 SAMTools SNP 339496 339496 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold619 SAMTools SNP 342608 342608 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold619 SAMTools SNP 343152 343152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 345829 345829 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C54%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold619 SAMTools SNP 349220 349220 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C21%2C17%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D0.22%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold619 SAMTools SNP 349232 349232 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.34%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 350221 350221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C34%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 350600 350600 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 350625 350625 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold619 SAMTools SNP 350747 350747 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.97%3BPV4%3D1%2C0.13%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C21:24 scaffold619 SAMTools SNP 350759 350759 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold619 SAMTools SNP 350763 350763 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C0.11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold619 SAMTools SNP 350764 350764 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.088%2C0.0019%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold619 SAMTools SNP 351155 351155 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold619 SAMTools SNP 352045 352045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C37%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold619 SAMTools SNP 352120 352120 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C176%2C3%2C64%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold619 SAMTools SNP 354813 354813 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C199:51 scaffold619 SAMTools SNP 354830 354830 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold619 SAMTools SNP 355481 355481 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C71:34 scaffold619 SAMTools SNP 355664 355664 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold619 SAMTools SNP 356252 356252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C43%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 356290 356290 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C13%2C17%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-11%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 356314 356314 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C10%2C93%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.008%2C4.2e-71%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 356410 356410 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C126%2C2%2C105%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C3.5e-83%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold619 SAMTools SNP 356502 356502 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C255%2C0:99 scaffold619 SAMTools SNP 358056 358056 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C30%2C0:56 scaffold619 SAMTools SNP 384306 384306 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.55%2C3.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C253:63 scaffold619 SAMTools SNP 394773 394773 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold619 SAMTools SNP 394944 394944 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 395157 395157 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 395265 395265 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold619 SAMTools SNP 395568 395568 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 396894 396894 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 396965 396965 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold619 SAMTools SNP 406042 406042 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold619 SAMTools SNP 406166 406166 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C129:46 scaffold619 SAMTools SNP 406547 406547 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold619 SAMTools SNP 420330 420330 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold619 SAMTools SNP 424489 424489 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold619 SAMTools SNP 426140 426140 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold619 SAMTools SNP 426223 426223 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C57%2C0:99 scaffold619 SAMTools SNP 426334 426334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold619 SAMTools SNP 428069 428069 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C20%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold619 SAMTools SNP 428149 428149 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold619 SAMTools SNP 428162 428162 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.33%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C71:74 scaffold619 SAMTools SNP 428664 428664 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.52%2C0.3%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold619 SAMTools SNP 428880 428880 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 428888 428888 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 429338 429338 11.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold619 SAMTools SNP 429464 429464 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.058%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold619 SAMTools SNP 429887 429887 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C9.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold619 SAMTools SNP 430350 430350 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C13%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C197:99 scaffold619 SAMTools SNP 430383 430383 162 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C60%2C216%2C0%2C210:51 scaffold619 SAMTools SNP 430904 430904 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C0.35%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C198:99 scaffold619 SAMTools SNP 432102 432102 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold619 SAMTools SNP 436515 436515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 437298 437298 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C33%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 437397 437397 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C26%2C43%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 438337 438337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C52%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold619 SAMTools SNP 438388 438388 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C37%2C41%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.35%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold619 SAMTools SNP 438410 438410 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C39%2C12%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold619 SAMTools SNP 438436 438436 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C35%2C38%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1.1e-07%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold619 SAMTools SNP 439368 439368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C67%2C9%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 441155 441155 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 441191 441191 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C15%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold619 SAMTools SNP 442002 442002 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold619 SAMTools SNP 442004 442004 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold619 SAMTools SNP 445535 445535 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1639%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C734%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 475160 475160 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold619 SAMTools SNP 475184 475184 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold619 SAMTools SNP 476984 476984 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold619 SAMTools SNP 477003 477003 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold619 SAMTools SNP 477016 477016 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold619 SAMTools SNP 477481 477481 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold619 SAMTools SNP 477521 477521 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold619 SAMTools SNP 477593 477593 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C33%2C0:63 scaffold619 SAMTools SNP 478060 478060 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0335%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C25:28 scaffold619 SAMTools SNP 478133 478133 12.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold619 SAMTools SNP 478154 478154 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold619 SAMTools SNP 478321 478321 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D968%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold619 SAMTools SNP 478349 478349 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D765%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C39%2C0:75 scaffold619 SAMTools SNP 478385 478385 73 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D752%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C54%2C15%2C87%2C0%2C81:75 scaffold619 SAMTools SNP 478581 478581 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold619 SAMTools SNP 478645 478645 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D640%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C32:35 scaffold619 SAMTools SNP 478737 478737 59 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D639%3BVDB%3D0.0440%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C23:26 scaffold619 SAMTools SNP 478765 478765 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D453%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0004%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C69:52 scaffold619 SAMTools SNP 478838 478838 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 478852 478852 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 489898 489898 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C54%2C0:99 scaffold619 SAMTools SNP 497845 497845 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C229%2C0:99 scaffold619 SAMTools SNP 498086 498086 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C74%3BMQ%3D50%3BFQ%3D-203%3BPV4%3D1%2C2.3e-13%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C176%2C0:99 scaffold619 SAMTools SNP 561034 561034 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C13%2C0%3BMQ%3D49%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C222:99 scaffold619 SAMTools SNP 561042 561042 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C9%2C0%3BMQ%3D49%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C198:77 scaffold619 SAMTools SNP 561063 561063 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C1%2C58%2C0%3BMQ%3D48%3BFQ%3D206%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold619 SAMTools SNP 562335 562335 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold619 SAMTools SNP 562338 562338 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold619 SAMTools SNP 562342 562342 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold619 SAMTools SNP 562377 562377 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 562433 562433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C21%2C61%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.84%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 562473 562473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C45%3BMQ%3D48%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold619 SAMTools SNP 562700 562700 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D46%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C54%2C0:99 scaffold619 SAMTools SNP 562910 562910 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C26%3BMQ%3D38%3BFQ%3D117%3BPV4%3D1%2C8.2e-10%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C195:99 scaffold619 SAMTools SNP 562967 562967 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D38%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C102:99 scaffold619 SAMTools SNP 620668 620668 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 625060 625060 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold619 SAMTools SNP 639145 639145 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C25%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 639320 639320 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C71%2C2%3BMQ%3D50%3BFQ%3D-200%3BPV4%3D1%2C0.44%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C173%2C0:99 scaffold619 SAMTools SNP 640077 640077 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold619 SAMTools SNP 641391 641391 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold619 SAMTools SNP 643245 643245 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 644864 644864 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 644866 644866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold619 SAMTools SNP 645223 645223 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 647731 647731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C23%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 649200 649200 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 649587 649587 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C32%2C20%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 649611 649611 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold619 SAMTools SNP 650080 650080 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C12%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.037%2C7.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold619 SAMTools SNP 650317 650317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 650368 650368 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold619 SAMTools SNP 651597 651597 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold619 SAMTools SNP 691425 691425 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold619 SAMTools SNP 703155 703155 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C14%2C14%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.61%2C6.1e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold619 SAMTools SNP 703271 703271 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C15%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C7.9e-37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 703321 703321 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C24%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D9.7e-06%2C5.1e-11%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold619 SAMTools SNP 703744 703744 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold619 SAMTools SNP 704022 704022 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.02%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold619 SAMTools SNP 704040 704040 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.47%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold619 SAMTools SNP 704073 704073 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 705031 705031 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 706146 706146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold619 SAMTools SNP 708849 708849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold619 SAMTools SNP 708945 708945 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C63%2C0:99 scaffold619 SAMTools SNP 709804 709804 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C3%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C247%2C0:99 scaffold619 SAMTools SNP 713279 713279 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C5%2C62%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.15%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 715235 715235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 720344 720344 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold619 SAMTools SNP 721007 721007 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 721578 721578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 721632 721632 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 724303 724303 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 726321 726321 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold619 SAMTools SNP 733417 733417 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 733460 733460 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 741986 741986 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold619 SAMTools SNP 745899 745899 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.25%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold619 SAMTools SNP 745932 745932 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.027%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C240:46 scaffold619 SAMTools SNP 746010 746010 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C1%2C13%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.66%2C1.5e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold619 SAMTools SNP 746021 746021 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C6%2C31%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.66%2C4.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C230:99 scaffold619 SAMTools SNP 746865 746865 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold619 SAMTools SNP 747097 747097 45.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold619 SAMTools SNP 775766 775766 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold619 SAMTools SNP 775935 775935 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold619 SAMTools SNP 776135 776135 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C100:46 scaffold619 SAMTools SNP 776136 776136 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C79:41 scaffold619 SAMTools SNP 776408 776408 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold619 SAMTools SNP 832174 832174 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold619 SAMTools SNP 833155 833155 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold619 SAMTools SNP 833189 833189 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 840447 840447 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 840782 840782 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold619 SAMTools SNP 840855 840855 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold619 SAMTools SNP 843186 843186 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 847954 847954 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 849760 849760 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold619 SAMTools SNP 850027 850027 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 850052 850052 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 850324 850324 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold619 SAMTools SNP 850543 850543 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold619 SAMTools SNP 856409 856409 48.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold619 SAMTools SNP 857104 857104 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold619 SAMTools SNP 857899 857899 120 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C6%3BMQ%3D48%3BFQ%3D123%3BPV4%3D0.061%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold619 SAMTools SNP 858276 858276 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold619 SAMTools SNP 859019 859019 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold619 SAMTools SNP 859040 859040 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold619 SAMTools SNP 859064 859064 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold619 SAMTools SNP 859471 859471 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold619 SAMTools SNP 859672 859672 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold619 SAMTools SNP 859676 859676 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold619 SAMTools SNP 861091 861091 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 864093 864093 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 868654 868654 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold619 SAMTools SNP 869109 869109 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold619 SAMTools SNP 871355 871355 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D56.6%3BPV4%3D1%2C0.0089%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C85:87 scaffold619 SAMTools SNP 871530 871530 128 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C66%2C0%2C154%2C45%2C151:99 scaffold619 SAMTools SNP 875005 875005 9.49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold619 SAMTools SNP 952040 952040 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C6.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C71:41 scaffold619 SAMTools SNP 976005 976005 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C159:74 scaffold619 SAMTools SNP 976332 976332 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C237:66 scaffold619 SAMTools SNP 976362 976362 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C173:99 scaffold619 SAMTools SNP 976759 976759 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold619 SAMTools SNP 978476 978476 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00057%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C59:42 scaffold619 SAMTools SNP 978486 978486 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.072%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold619 SAMTools SNP 978525 978525 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C175:99 scaffold619 SAMTools SNP 979256 979256 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold619 SAMTools SNP 979295 979295 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 980245 980245 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold619 SAMTools SNP 980707 980707 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C197:66 scaffold619 SAMTools SNP 980725 980725 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.48%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold619 SAMTools SNP 980773 980773 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold619 SAMTools SNP 980797 980797 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold619 SAMTools SNP 981423 981423 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.21%2C1%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold619 SAMTools SNP 981709 981709 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.099%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C242:99 scaffold619 SAMTools SNP 981766 981766 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold619 SAMTools SNP 982358 982358 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold619 SAMTools SNP 983088 983088 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 983976 983976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 983979 983979 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 984924 984924 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold619 SAMTools SNP 984931 984931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold619 SAMTools SNP 985134 985134 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C115:99 scaffold619 SAMTools SNP 985405 985405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 985450 985450 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold619 SAMTools SNP 985474 985474 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.36%2C0.21%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C167:99 scaffold619 SAMTools SNP 986301 986301 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold619 SAMTools SNP 986340 986340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 986922 986922 26.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold619 SAMTools SNP 987008 987008 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold619 SAMTools SNP 991950 991950 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold619 SAMTools SNP 995593 995593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C39%2C8%2C35%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.078%2C0.38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 995617 995617 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C81%2C7%2C72%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 995900 995900 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold619 SAMTools SNP 995935 995935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C17%2C6%3BMQ%3D44%3BFQ%3D225%3BPV4%3D1%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 996022 996022 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C24%2C77%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 996455 996455 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C30%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold619 SAMTools SNP 996659 996659 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold619 SAMTools SNP 996994 996994 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D2%2C2%2C28%2C26%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C13:16 scaffold619 SAMTools SNP 997054 997054 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.65%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold619 SAMTools SNP 997072 997072 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C18%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.3%2C0.14%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold619 SAMTools SNP 999207 999207 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C172%2C0:99 scaffold619 SAMTools SNP 999254 999254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold619 SAMTools SNP 999278 999278 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.023%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold619 SAMTools SNP 999483 999483 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C28%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.49%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 999489 999489 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.0015%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 999785 999785 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C37%2C2%2C14%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.006%2C1%2C1%2C1.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold619 SAMTools SNP 999845 999845 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C30%2C13%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00078%2C8.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1000116 1000116 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C76%2C1%2C38%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold619 SAMTools SNP 1000144 1000144 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C80%2C1%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1000348 1000348 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.089%2C1%2C1%2C3.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold619 SAMTools SNP 1000397 1000397 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C204:99 scaffold619 SAMTools SNP 1000415 1000415 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.31%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold619 SAMTools SNP 1000567 1000567 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1000778 1000778 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1002093 1002093 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C29%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1002163 1002163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1002499 1002499 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1002845 1002845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C12%2C45%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.098%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1003238 1003238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C54%2C84%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.9%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1003280 1003280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C16%2C86%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold619 SAMTools SNP 1007574 1007574 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C12%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.4%2C1.8e-29%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold619 SAMTools SNP 1008159 1008159 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C66%2C0:99 scaffold619 SAMTools SNP 1008309 1008309 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold619 SAMTools SNP 1012999 1012999 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 1013384 1013384 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold619 SAMTools SNP 1013658 1013658 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold619 SAMTools SNP 1047408 1047408 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C18%2C0%3BMQ%3D44%3BFQ%3D46%3BPV4%3D1%2C0.44%2C0.5%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C192:76 scaffold619 SAMTools SNP 1048284 1048284 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold619 SAMTools SNP 1052282 1052282 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C60%2C0:99 scaffold619 SAMTools SNP 1054588 1054588 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C96%2C0:99 scaffold619 SAMTools SNP 1054600 1054600 14.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold619 SAMTools SNP 1057593 1057593 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold619 SAMTools SNP 1060854 1060854 35.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold619 SAMTools SNP 1070665 1070665 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D5.47%3BPV4%3D1%2C1%2C0.059%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold619 SAMTools SNP 1071183 1071183 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 1071230 1071230 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 1071659 1071659 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold619 SAMTools SNP 1072203 1072203 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold619 SAMTools SNP 1072217 1072217 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold619 SAMTools SNP 1072892 1072892 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold619 SAMTools SNP 1072910 1072910 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold619 SAMTools SNP 1072999 1072999 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold619 SAMTools SNP 1073403 1073403 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C35:38 scaffold619 SAMTools SNP 1076920 1076920 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold619 SAMTools SNP 1076971 1076971 48.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold619 SAMTools SNP 1081298 1081298 6.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold619 SAMTools SNP 1082194 1082194 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C28%3BMQ%3D8%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C144%2C0:99 scaffold619 SAMTools SNP 1084270 1084270 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C51%3BMQ%3D3%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C190%2C0:99 scaffold619 SAMTools SNP 1096347 1096347 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 1096412 1096412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold619 SAMTools SNP 1096432 1096432 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.42%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold619 SAMTools SNP 1096458 1096458 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold619 SAMTools SNP 1098042 1098042 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold619 SAMTools SNP 1098193 1098193 39.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold619 SAMTools SNP 1098234 1098234 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold619 SAMTools SNP 1098974 1098974 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold62 SAMTools SNP 1682 1682 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold62 SAMTools SNP 1691 1691 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold62 SAMTools SNP 1736 1736 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold62 SAMTools SNP 1766 1766 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 1768 1768 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C89:40 scaffold62 SAMTools SNP 1957 1957 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold62 SAMTools SNP 1965 1965 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold62 SAMTools SNP 20638 20638 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold62 SAMTools SNP 20639 20639 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold62 SAMTools SNP 20899 20899 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold62 SAMTools SNP 21276 21276 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold62 SAMTools SNP 21567 21567 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C154:85 scaffold62 SAMTools SNP 21621 21621 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.016%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C219:50 scaffold62 SAMTools SNP 22173 22173 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold62 SAMTools SNP 22269 22269 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold62 SAMTools SNP 22506 22506 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold62 SAMTools SNP 22514 22514 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold62 SAMTools SNP 22628 22628 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold62 SAMTools SNP 22647 22647 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold62 SAMTools SNP 22670 22670 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold62 SAMTools SNP 26104 26104 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 26146 26146 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold62 SAMTools SNP 26505 26505 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.26%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold62 SAMTools SNP 26789 26789 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0079%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C132:99 scaffold62 SAMTools SNP 26830 26830 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold62 SAMTools SNP 27003 27003 20.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold62 SAMTools SNP 31084 31084 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C19%2C20%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.026%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold62 SAMTools SNP 31177 31177 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C63%2C79%2C52%3BMQ%3D50%3BFQ%3D85%3BPV4%3D2.2e-06%2C1.3e-151%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold62 SAMTools SNP 31588 31588 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold62 SAMTools SNP 34185 34185 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold62 SAMTools SNP 34241 34241 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold62 SAMTools SNP 47705 47705 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 47775 47775 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold62 SAMTools SNP 191469 191469 52.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold62 SAMTools SNP 199217 199217 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D29%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold62 SAMTools SNP 199235 199235 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold62 SAMTools SNP 200063 200063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C31%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1e-08%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold62 SAMTools SNP 201482 201482 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C18%2C0:33 scaffold62 SAMTools SNP 202239 202239 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C21:24 scaffold62 SAMTools SNP 202240 202240 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C21:24 scaffold62 SAMTools SNP 204780 204780 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C45%2C0:86 scaffold62 SAMTools SNP 209084 209084 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C6.6e-09%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C172:33 scaffold62 SAMTools SNP 209122 209122 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C7.8e-11%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C150:57 scaffold62 SAMTools SNP 209799 209799 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0028%2C2.5e-20%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold62 SAMTools SNP 210007 210007 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C114%2C0:99 scaffold62 SAMTools SNP 210129 210129 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C7%2C14%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C2.5e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold62 SAMTools SNP 210295 210295 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C45%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00027%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold62 SAMTools SNP 210708 210708 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold62 SAMTools SNP 210741 210741 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold62 SAMTools SNP 211248 211248 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C228:99 scaffold62 SAMTools SNP 213629 213629 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C33:36 scaffold62 SAMTools SNP 215018 215018 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold62 SAMTools SNP 215051 215051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold62 SAMTools SNP 215183 215183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold62 SAMTools SNP 215210 215210 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold62 SAMTools SNP 215213 215213 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C1%2C19%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C236:71 scaffold62 SAMTools SNP 216546 216546 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D109%2C44%2C2%2C38%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D5.1e-15%2C3.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold62 SAMTools SNP 217170 217170 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold62 SAMTools SNP 217355 217355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 221084 221084 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold62 SAMTools SNP 221108 221108 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D1%2C1.7e-26%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C46%2C0:89 scaffold62 SAMTools SNP 221337 221337 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold62 SAMTools SNP 221377 221377 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold62 SAMTools SNP 221378 221378 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold62 SAMTools SNP 222008 222008 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold62 SAMTools SNP 222080 222080 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C19%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold62 SAMTools SNP 223001 223001 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold62 SAMTools SNP 223025 223025 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold62 SAMTools SNP 223323 223323 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold62 SAMTools SNP 223571 223571 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold62 SAMTools SNP 223715 223715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold62 SAMTools SNP 224141 224141 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold62 SAMTools SNP 224365 224365 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold62 SAMTools SNP 224421 224421 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold62 SAMTools SNP 225017 225017 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold62 SAMTools SNP 226811 226811 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 230942 230942 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold62 SAMTools SNP 231503 231503 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C14%3BMQ%3D48%3BFQ%3D180%3BPV4%3D0.2%2C0.066%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C207:99 scaffold62 SAMTools SNP 231935 231935 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 231960 231960 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C157:57 scaffold62 SAMTools SNP 232221 232221 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold62 SAMTools SNP 232487 232487 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C253:99 scaffold62 SAMTools SNP 233910 233910 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold62 SAMTools SNP 234579 234579 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold62 SAMTools SNP 234594 234594 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 234740 234740 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold62 SAMTools SNP 234764 234764 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold62 SAMTools SNP 234870 234870 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold62 SAMTools SNP 234882 234882 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold62 SAMTools SNP 235170 235170 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 235239 235239 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold62 SAMTools SNP 235689 235689 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold62 SAMTools SNP 236011 236011 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold62 SAMTools SNP 236050 236050 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold62 SAMTools SNP 236062 236062 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C3%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.12%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold62 SAMTools SNP 236065 236065 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold62 SAMTools SNP 236077 236077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold62 SAMTools SNP 240603 240603 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 240973 240973 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold62 SAMTools SNP 243562 243562 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold62 SAMTools SNP 258940 258940 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold62 SAMTools SNP 259073 259073 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 268403 268403 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.046%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold62 SAMTools SNP 268444 268444 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold62 SAMTools SNP 270865 270865 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold62 SAMTools SNP 277279 277279 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7993%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D175%2C4666%2C0%2C3064%3BMQ%3D49%3BFQ%3D97%3BPV4%3D1.7e-38%2C0%2C7.8e-23%2C1.4e-229;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold62 SAMTools SNP 277741 277741 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C9e-13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C142:99 scaffold62 SAMTools SNP 278766 278766 93.1 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C147%2C129%2C186%2C0%2C174:33 scaffold62 SAMTools SNP 278784 278784 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold62 SAMTools SNP 279367 279367 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.44%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C215:99 scaffold62 SAMTools SNP 279584 279584 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C27%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold62 SAMTools SNP 279707 279707 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C184:73 scaffold62 SAMTools SNP 280072 280072 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold62 SAMTools SNP 280588 280588 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold62 SAMTools SNP 280880 280880 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold62 SAMTools SNP 280947 280947 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 281007 281007 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold62 SAMTools SNP 282290 282290 82.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold62 SAMTools SNP 283372 283372 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold62 SAMTools SNP 284855 284855 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 284870 284870 63.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold62 SAMTools SNP 285659 285659 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C124:99 scaffold62 SAMTools SNP 285919 285919 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold62 SAMTools SNP 287527 287527 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.15%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold62 SAMTools SNP 287671 287671 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.23%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold62 SAMTools SNP 290496 290496 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold62 SAMTools SNP 290507 290507 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C9%2C0:16 scaffold62 SAMTools SNP 293045 293045 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D10.3%3BPV4%3D0.25%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C43:39 scaffold62 SAMTools SNP 293057 293057 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D0.4%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C89:36 scaffold62 SAMTools SNP 293654 293654 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.18%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C222:76 scaffold62 SAMTools SNP 293681 293681 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold62 SAMTools SNP 294205 294205 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold62 SAMTools SNP 294530 294530 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold62 SAMTools SNP 294572 294572 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold62 SAMTools SNP 295150 295150 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold62 SAMTools SNP 295650 295650 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold62 SAMTools SNP 295846 295846 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold62 SAMTools SNP 296819 296819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold62 SAMTools SNP 299492 299492 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold62 SAMTools SNP 300017 300017 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold62 SAMTools SNP 300279 300279 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C45%2C0:82 scaffold62 SAMTools SNP 300288 300288 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C45%2C0:87 scaffold62 SAMTools SNP 300338 300338 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold62 SAMTools SNP 301371 301371 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold62 SAMTools SNP 301652 301652 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold62 SAMTools SNP 301752 301752 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold62 SAMTools SNP 303452 303452 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold62 SAMTools SNP 303457 303457 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold62 SAMTools SNP 304824 304824 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold62 SAMTools SNP 306054 306054 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold62 SAMTools SNP 306478 306478 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold62 SAMTools SNP 309653 309653 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C513%2C0%2C190%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold62 SAMTools SNP 309685 309685 87 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D681%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C503%2C0%2C178%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold62 SAMTools SNP 317335 317335 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 318450 318450 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold62 SAMTools SNP 321802 321802 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold62 SAMTools SNP 340518 340518 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold62 SAMTools SNP 340962 340962 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold62 SAMTools SNP 340967 340967 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold62 SAMTools SNP 347553 347553 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.67%2C3.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold62 SAMTools SNP 347795 347795 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C3%2C11%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.073%2C3.8e-42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold62 SAMTools SNP 360449 360449 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold62 SAMTools SNP 410457 410457 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold62 SAMTools SNP 410465 410465 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold621 SAMTools SNP 1352 1352 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 3973 3973 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold621 SAMTools SNP 5571 5571 87 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C3%2C32%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.26%2C8.8e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C237:99 scaffold621 SAMTools SNP 23975 23975 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold621 SAMTools SNP 65453 65453 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.018%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C104:40 scaffold621 SAMTools SNP 65902 65902 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C12%3BMQ%3D49%3BFQ%3D53%3BPV4%3D1%2C6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C220:83 scaffold621 SAMTools SNP 66354 66354 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.083%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold621 SAMTools SNP 67575 67575 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 69035 69035 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 110968 110968 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C12%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C51:54 scaffold621 SAMTools SNP 110999 110999 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.36%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold621 SAMTools SNP 111007 111007 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold621 SAMTools SNP 137984 137984 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 138033 138033 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold621 SAMTools SNP 138129 138129 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 138339 138339 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 148064 148064 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 158481 158481 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 160332 160332 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold621 SAMTools SNP 161282 161282 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 164149 164149 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 165366 165366 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C40:42 scaffold621 SAMTools SNP 174007 174007 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 174147 174147 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 180560 180560 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 180581 180581 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 182338 182338 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 182656 182656 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold621 SAMTools SNP 183943 183943 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 191001 191001 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 191226 191226 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold621 SAMTools SNP 191350 191350 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 191749 191749 13.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold621 SAMTools SNP 192488 192488 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.037%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold621 SAMTools SNP 194809 194809 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 199502 199502 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 199509 199509 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 202264 202264 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold621 SAMTools SNP 202354 202354 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold621 SAMTools SNP 206355 206355 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 206359 206359 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 209504 209504 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 210995 210995 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 211055 211055 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold621 SAMTools SNP 211509 211509 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 211587 211587 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 211859 211859 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold621 SAMTools SNP 213433 213433 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold621 SAMTools SNP 213457 213457 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold621 SAMTools SNP 213469 213469 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.41%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold621 SAMTools SNP 213499 213499 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 213562 213562 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold621 SAMTools SNP 214446 214446 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 214452 214452 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 214691 214691 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold621 SAMTools SNP 214799 214799 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold621 SAMTools SNP 215116 215116 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00095%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C32:35 scaffold621 SAMTools SNP 215339 215339 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C29:32 scaffold621 SAMTools SNP 215407 215407 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold621 SAMTools SNP 217002 217002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 217027 217027 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold621 SAMTools SNP 218007 218007 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold621 SAMTools SNP 218292 218292 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0037%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold621 SAMTools SNP 218307 218307 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold621 SAMTools SNP 218664 218664 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold621 SAMTools SNP 218685 218685 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 219475 219475 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold621 SAMTools SNP 219564 219564 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold621 SAMTools SNP 219883 219883 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 219964 219964 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 220182 220182 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 222265 222265 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold621 SAMTools SNP 222268 222268 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold621 SAMTools SNP 222591 222591 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.054%2C0.48%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C241:99 scaffold621 SAMTools SNP 222626 222626 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold621 SAMTools SNP 222815 222815 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold621 SAMTools SNP 223087 223087 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold621 SAMTools SNP 223384 223384 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 223410 223410 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 223428 223428 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 224540 224540 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 224991 224991 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 225986 225986 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 226637 226637 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold621 SAMTools SNP 226815 226815 160 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C15%2C0:27 scaffold621 SAMTools SNP 227215 227215 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 227228 227228 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 227647 227647 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 227984 227984 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 228005 228005 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 229302 229302 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 229715 229715 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 229756 229756 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 229760 229760 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold621 SAMTools SNP 229799 229799 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold621 SAMTools SNP 229940 229940 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold621 SAMTools SNP 229959 229959 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold621 SAMTools SNP 229985 229985 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold621 SAMTools SNP 230374 230374 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.52%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C221:99 scaffold621 SAMTools SNP 230530 230530 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 230713 230713 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.4%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C3%2C0:6 scaffold621 SAMTools SNP 230978 230978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold621 SAMTools SNP 231104 231104 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold621 SAMTools SNP 231738 231738 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold621 SAMTools SNP 231775 231775 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.9e-10%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C152:54 scaffold621 SAMTools SNP 232315 232315 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold621 SAMTools SNP 233000 233000 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold621 SAMTools SNP 233028 233028 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold621 SAMTools SNP 233038 233038 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold621 SAMTools SNP 233064 233064 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 234774 234774 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold621 SAMTools SNP 236010 236010 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold621 SAMTools SNP 237524 237524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold621 SAMTools SNP 237865 237865 137 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C15%2C0:27 scaffold621 SAMTools SNP 240043 240043 66.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold621 SAMTools SNP 240131 240131 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C38%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.12%2C1.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold621 SAMTools SNP 240143 240143 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C84%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.11%2C3.7e-39%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold621 SAMTools SNP 240318 240318 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C80%2C1%2C22%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0026%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold621 SAMTools SNP 240361 240361 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C27%2C0:51 scaffold621 SAMTools SNP 240592 240592 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C54%2C0:99 scaffold621 SAMTools SNP 240613 240613 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold621 SAMTools SNP 240616 240616 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.17%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C25:28 scaffold621 SAMTools SNP 244006 244006 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold621 SAMTools SNP 244516 244516 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold621 SAMTools SNP 244564 244564 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold621 SAMTools SNP 244809 244809 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold621 SAMTools SNP 244818 244818 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold621 SAMTools SNP 244821 244821 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold621 SAMTools SNP 244859 244859 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold621 SAMTools SNP 245049 245049 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold621 SAMTools SNP 245089 245089 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold621 SAMTools SNP 245157 245157 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 245196 245196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold621 SAMTools SNP 245814 245814 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 248346 248346 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 249117 249117 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 275453 275453 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 276995 276995 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 277394 277394 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 284569 284569 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold621 SAMTools SNP 284746 284746 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 284871 284871 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold621 SAMTools SNP 289137 289137 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 289142 289142 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 292147 292147 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold621 SAMTools SNP 292356 292356 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold621 SAMTools SNP 292375 292375 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold621 SAMTools SNP 296311 296311 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold621 SAMTools SNP 296491 296491 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold621 SAMTools SNP 296571 296571 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold621 SAMTools SNP 308582 308582 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold621 SAMTools SNP 308736 308736 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold621 SAMTools SNP 309365 309365 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold621 SAMTools SNP 309938 309938 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold621 SAMTools SNP 332060 332060 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 333578 333578 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.14%2C8.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C107:39 scaffold621 SAMTools SNP 340677 340677 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold621 SAMTools SNP 340858 340858 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C3.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C133:72 scaffold621 SAMTools SNP 382764 382764 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 382879 382879 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 382944 382944 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold621 SAMTools SNP 470230 470230 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C86:66 scaffold621 SAMTools SNP 470308 470308 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold621 SAMTools SNP 470317 470317 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold621 SAMTools SNP 471001 471001 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold621 SAMTools SNP 471415 471415 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold621 SAMTools SNP 471434 471434 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold621 SAMTools SNP 471466 471466 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold621 SAMTools SNP 472262 472262 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold621 SAMTools SNP 472311 472311 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.44%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C229:99 scaffold621 SAMTools SNP 473008 473008 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold621 SAMTools SNP 473017 473017 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.085%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold621 SAMTools SNP 473032 473032 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold621 SAMTools SNP 473263 473263 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 473284 473284 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold621 SAMTools SNP 474230 474230 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 474535 474535 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 476423 476423 73 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.28%2C1%2C1%2C6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold621 SAMTools SNP 476967 476967 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C21%2C0:39 scaffold621 SAMTools SNP 477003 477003 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold621 SAMTools SNP 477045 477045 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold621 SAMTools SNP 477574 477574 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold621 SAMTools SNP 480475 480475 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold621 SAMTools SNP 480532 480532 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.43%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C225:99 scaffold621 SAMTools SNP 480535 480535 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold621 SAMTools SNP 481893 481893 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C6%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold621 SAMTools SNP 481950 481950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold621 SAMTools SNP 481980 481980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C36%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold621 SAMTools SNP 481992 481992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C1%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold621 SAMTools SNP 482010 482010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C57%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold621 SAMTools SNP 484496 484496 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold621 SAMTools SNP 487685 487685 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C239:99 scaffold621 SAMTools SNP 487690 487690 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold621 SAMTools SNP 488702 488702 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold621 SAMTools SNP 488846 488846 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 20853 20853 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold622 SAMTools SNP 21430 21430 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold622 SAMTools SNP 22868 22868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold622 SAMTools SNP 24808 24808 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold622 SAMTools SNP 24981 24981 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold622 SAMTools SNP 36424 36424 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 53346 53346 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold622 SAMTools SNP 53377 53377 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.00011%2C0.0004%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold622 SAMTools SNP 53723 53723 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C11%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D3.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold622 SAMTools SNP 54510 54510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C23%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold622 SAMTools SNP 54552 54552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C34%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold622 SAMTools SNP 54588 54588 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 55073 55073 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C33%2C40%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 55384 55384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D611%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D195%2C41%2C314%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 55419 55419 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D697%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D210%2C46%2C309%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 55502 55502 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D645%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C41%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold622 SAMTools SNP 64418 64418 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 64608 64608 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold622 SAMTools SNP 64621 64621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold622 SAMTools SNP 65403 65403 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold622 SAMTools SNP 65430 65430 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold622 SAMTools SNP 66934 66934 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C13%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.3%2C2.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold622 SAMTools SNP 67080 67080 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.57%2C1.6e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold622 SAMTools SNP 67134 67134 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C8%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.00094%2C2.2e-11%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold622 SAMTools SNP 67231 67231 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold622 SAMTools SNP 68790 68790 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C11%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.00038%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold622 SAMTools SNP 73794 73794 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold622 SAMTools SNP 74254 74254 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 77121 77121 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold622 SAMTools SNP 77160 77160 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 77172 77172 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 79378 79378 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 79997 79997 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold622 SAMTools SNP 80374 80374 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold622 SAMTools SNP 80419 80419 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold622 SAMTools SNP 80434 80434 122 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.048%2C0.1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C156:99 scaffold622 SAMTools SNP 83889 83889 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.28%2C0.057%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold622 SAMTools SNP 86624 86624 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold622 SAMTools SNP 86767 86767 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C144%2C0:99 scaffold622 SAMTools SNP 87599 87599 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C9%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.024%2C1.9e-16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold622 SAMTools SNP 88448 88448 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C30%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold622 SAMTools SNP 92147 92147 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C33%2C0:63 scaffold622 SAMTools SNP 92691 92691 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C78%2C0:99 scaffold622 SAMTools SNP 92823 92823 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 93032 93032 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.18%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold622 SAMTools SNP 93067 93067 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold622 SAMTools SNP 94246 94246 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C15%2C11%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold622 SAMTools SNP 94258 94258 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold622 SAMTools SNP 94363 94363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C7%2C48%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C2.7e-07%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold622 SAMTools SNP 95541 95541 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold622 SAMTools SNP 97017 97017 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.0002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold622 SAMTools SNP 97028 97028 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.019%2C0.0015%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold622 SAMTools SNP 97458 97458 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 97573 97573 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C51%2C0:99 scaffold622 SAMTools SNP 97614 97614 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold622 SAMTools SNP 97900 97900 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C132:99 scaffold622 SAMTools SNP 99768 99768 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold622 SAMTools SNP 99804 99804 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.11%2C0.26%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold622 SAMTools SNP 100266 100266 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 100292 100292 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 100378 100378 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold622 SAMTools SNP 102432 102432 25 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C9.3e-11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C96:58 scaffold622 SAMTools SNP 103209 103209 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.52%2C1.4e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C223:48 scaffold622 SAMTools SNP 103572 103572 51.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold622 SAMTools SNP 104592 104592 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C30%2C0:57 scaffold622 SAMTools SNP 104775 104775 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold622 SAMTools SNP 104795 104795 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold622 SAMTools SNP 111569 111569 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 111596 111596 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 113454 113454 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 115274 115274 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 115279 115279 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 115565 115565 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold622 SAMTools SNP 116565 116565 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold622 SAMTools SNP 118598 118598 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C6%2C66%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.43%2C0.33%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold622 SAMTools SNP 118613 118613 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C12%2C20%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.12%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold622 SAMTools SNP 121377 121377 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C218%2C64%2C229%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.00042%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold622 SAMTools SNP 122477 122477 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D712%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D197%2C75%2C382%2C45%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1e-08%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold622 SAMTools SNP 122490 122490 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C84%2C339%2C66%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1.6e-06%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold622 SAMTools SNP 122965 122965 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold622 SAMTools SNP 123427 123427 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold622 SAMTools SNP 123473 123473 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold622 SAMTools SNP 124529 124529 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 126939 126939 107 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D33%3BFQ%3D-31%3BPV4%3D0.17%2C0.2%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C4%2C0:7 scaffold622 SAMTools SNP 128423 128423 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D39%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C30%2C0:57 scaffold622 SAMTools SNP 128482 128482 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C4%3BMQ%3D40%3BFQ%3D90.8%3BPV4%3D0.24%2C0.25%2C0.18%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C130:99 scaffold622 SAMTools SNP 128869 128869 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.07%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C121:99 scaffold622 SAMTools SNP 129372 129372 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold622 SAMTools SNP 130160 130160 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold622 SAMTools SNP 136786 136786 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold622 SAMTools SNP 136787 136787 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold622 SAMTools SNP 137521 137521 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold622 SAMTools SNP 137602 137602 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold622 SAMTools SNP 138734 138734 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 139718 139718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold622 SAMTools SNP 139765 139765 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.083%2C2.8e-06%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C226:34 scaffold622 SAMTools SNP 139781 139781 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold622 SAMTools SNP 140247 140247 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C207:99 scaffold622 SAMTools SNP 140271 140271 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C177:99 scaffold622 SAMTools SNP 140504 140504 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold622 SAMTools SNP 140525 140525 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C107:99 scaffold622 SAMTools SNP 140558 140558 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.053%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold622 SAMTools SNP 140996 140996 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold622 SAMTools SNP 141751 141751 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold622 SAMTools SNP 141761 141761 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold622 SAMTools SNP 141854 141854 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold622 SAMTools SNP 141957 141957 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold622 SAMTools SNP 142224 142224 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold622 SAMTools SNP 142536 142536 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C12%2C9%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.35%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold622 SAMTools SNP 165492 165492 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 165528 165528 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold622 SAMTools SNP 175674 175674 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold622 SAMTools SNP 175727 175727 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold622 SAMTools SNP 175938 175938 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold622 SAMTools SNP 176355 176355 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold622 SAMTools SNP 276363 276363 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 370402 370402 15.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold622 SAMTools SNP 372332 372332 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold622 SAMTools SNP 372780 372780 43.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold622 SAMTools SNP 372931 372931 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C255%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 373448 373448 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C162%2C10%2C18%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.00026%2C0.19%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold622 SAMTools SNP 373457 373457 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C55%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold622 SAMTools SNP 374105 374105 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.2e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C182:33 scaffold622 SAMTools SNP 374117 374117 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C99:99 scaffold622 SAMTools SNP 374123 374123 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C123%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.36%2C0.18%2C1%2C5.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C56:59 scaffold622 SAMTools SNP 374168 374168 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C227%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 374924 374924 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C167%2C3%2C72%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1.7e-13%2C1%2C1%2C3.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold622 SAMTools SNP 375490 375490 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C9%2C120%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0011%2C2.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C140:99 scaffold622 SAMTools SNP 375556 375556 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C255%2C0:99 scaffold622 SAMTools SNP 376300 376300 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold622 SAMTools SNP 376354 376354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold622 SAMTools SNP 376989 376989 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold622 SAMTools SNP 377952 377952 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C32%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold622 SAMTools SNP 377969 377969 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold622 SAMTools SNP 378478 378478 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00038%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold622 SAMTools SNP 378537 378537 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold622 SAMTools SNP 379754 379754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 379765 379765 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C3%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.043%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold622 SAMTools SNP 379829 379829 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.078%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold622 SAMTools SNP 380031 380031 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold622 SAMTools SNP 380941 380941 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold622 SAMTools SNP 384210 384210 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.044%2C0.00073%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold622 SAMTools SNP 384213 384213 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold622 SAMTools SNP 384246 384246 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold622 SAMTools SNP 385475 385475 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C37%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C117%2C0:99 scaffold622 SAMTools SNP 390281 390281 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 398036 398036 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C15%2C0:27 scaffold622 SAMTools SNP 398084 398084 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold622 SAMTools SNP 420922 420922 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 420926 420926 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 421039 421039 48.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold622 SAMTools SNP 439393 439393 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold622 SAMTools SNP 439997 439997 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold622 SAMTools SNP 440009 440009 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold622 SAMTools SNP 440305 440305 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold622 SAMTools SNP 442852 442852 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 442882 442882 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C31%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold622 SAMTools SNP 442909 442909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold622 SAMTools SNP 443011 443011 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C33%2C0:63 scaffold622 SAMTools SNP 443038 443038 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold622 SAMTools SNP 443234 443234 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold622 SAMTools SNP 443270 443270 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.23%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold622 SAMTools SNP 443707 443707 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C155:99 scaffold622 SAMTools SNP 444065 444065 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold622 SAMTools SNP 444087 444087 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold622 SAMTools SNP 444098 444098 222 . . REF=A;ALT=C,T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0%2C237%2C10%2C234:99 scaffold622 SAMTools SNP 444137 444137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C4%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold622 SAMTools SNP 449574 449574 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold622 SAMTools SNP 449577 449577 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C238:99 scaffold622 SAMTools SNP 449643 449643 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold622 SAMTools SNP 453125 453125 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold622 SAMTools SNP 453200 453200 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold622 SAMTools SNP 454255 454255 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold622 SAMTools SNP 454859 454859 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 455213 455213 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold622 SAMTools SNP 455784 455784 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold622 SAMTools SNP 456425 456425 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C17%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 456442 456442 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C14%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 462185 462185 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold622 SAMTools SNP 462195 462195 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C252%2C0%2C232%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold622 SAMTools SNP 464226 464226 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C19%2C41%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 469832 469832 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold622 SAMTools SNP 472099 472099 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold622 SAMTools SNP 473895 473895 16.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold622 SAMTools SNP 475471 475471 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold622 SAMTools SNP 475631 475631 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold622 SAMTools SNP 475661 475661 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.4%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold622 SAMTools SNP 475670 475670 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.12%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold622 SAMTools SNP 475675 475675 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold622 SAMTools SNP 485078 485078 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold622 SAMTools SNP 486329 486329 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold622 SAMTools SNP 486366 486366 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.17%2C1.9e-13%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C154:47 scaffold622 SAMTools SNP 486373 486373 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold622 SAMTools SNP 486397 486397 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold622 SAMTools SNP 486950 486950 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold622 SAMTools SNP 489267 489267 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C2%2C39%2C0%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.5%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold622 SAMTools SNP 491727 491727 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.64%2C0.00021%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold622 SAMTools SNP 491733 491733 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold622 SAMTools SNP 491751 491751 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold622 SAMTools SNP 491793 491793 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 492898 492898 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold622 SAMTools SNP 493441 493441 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold622 SAMTools SNP 493468 493468 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.33%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold622 SAMTools SNP 494336 494336 180 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C18%2C0:33 scaffold622 SAMTools SNP 494395 494395 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold622 SAMTools SNP 496697 496697 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.5%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold622 SAMTools SNP 496715 496715 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold622 SAMTools SNP 496996 496996 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold622 SAMTools SNP 500193 500193 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C152:99 scaffold622 SAMTools SNP 501288 501288 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold622 SAMTools SNP 501306 501306 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold622 SAMTools SNP 501354 501354 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold622 SAMTools SNP 501968 501968 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold622 SAMTools SNP 501986 501986 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.36%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold622 SAMTools SNP 501987 501987 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold622 SAMTools SNP 505257 505257 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.029%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold622 SAMTools SNP 505293 505293 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.055%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold622 SAMTools SNP 505320 505320 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold622 SAMTools SNP 505765 505765 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold622 SAMTools SNP 505973 505973 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C8%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold622 SAMTools SNP 506133 506133 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold622 SAMTools SNP 507358 507358 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.4%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold622 SAMTools SNP 508233 508233 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.018%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C191:39 scaffold622 SAMTools SNP 508240 508240 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C0.067%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C194:39 scaffold622 SAMTools SNP 508879 508879 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.059%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold622 SAMTools SNP 514051 514051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C1%2C49%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold622 SAMTools SNP 514090 514090 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold622 SAMTools SNP 514235 514235 224 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C36%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C249:99 scaffold622 SAMTools SNP 514279 514279 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold622 SAMTools SNP 514727 514727 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.23%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C69:72 scaffold622 SAMTools SNP 514758 514758 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold622 SAMTools SNP 514916 514916 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0098%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold622 SAMTools SNP 515140 515140 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold622 SAMTools SNP 516643 516643 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 516645 516645 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold622 SAMTools SNP 516845 516845 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold622 SAMTools SNP 516864 516864 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold622 SAMTools SNP 517174 517174 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold622 SAMTools SNP 517204 517204 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.25%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C9:12 scaffold622 SAMTools SNP 517818 517818 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 517849 517849 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 517907 517907 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C69:72 scaffold622 SAMTools SNP 518050 518050 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C10%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C52:55 scaffold622 SAMTools SNP 518100 518100 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold622 SAMTools SNP 518380 518380 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 518392 518392 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 519019 519019 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold622 SAMTools SNP 519070 519070 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 519937 519937 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold622 SAMTools SNP 520110 520110 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.22%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold622 SAMTools SNP 520900 520900 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 520958 520958 205 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17%2C218%2C0%2C215:57 scaffold622 SAMTools SNP 520991 520991 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold622 SAMTools SNP 521135 521135 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C190:99 scaffold622 SAMTools SNP 521171 521171 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.014%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold622 SAMTools SNP 521203 521203 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C10%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.21%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold622 SAMTools SNP 522062 522062 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold622 SAMTools SNP 522957 522957 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold622 SAMTools SNP 523305 523305 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold622 SAMTools SNP 523431 523431 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold622 SAMTools SNP 523460 523460 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold622 SAMTools SNP 523916 523916 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold622 SAMTools SNP 523952 523952 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 524595 524595 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 524602 524602 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 525257 525257 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 525292 525292 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 525375 525375 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold622 SAMTools SNP 526164 526164 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold622 SAMTools SNP 533247 533247 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.26%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold622 SAMTools SNP 533253 533253 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold622 SAMTools SNP 533722 533722 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold622 SAMTools SNP 533800 533800 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 533952 533952 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 534039 534039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold622 SAMTools SNP 534550 534550 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold622 SAMTools SNP 534968 534968 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold622 SAMTools SNP 535184 535184 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 535191 535191 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 535269 535269 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold622 SAMTools SNP 535475 535475 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.042%2C0.00035%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold622 SAMTools SNP 535494 535494 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold622 SAMTools SNP 535555 535555 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold622 SAMTools SNP 535800 535800 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold622 SAMTools SNP 535801 535801 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold622 SAMTools SNP 536030 536030 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold622 SAMTools SNP 536226 536226 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 22875 22875 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold625 SAMTools SNP 22955 22955 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 22984 22984 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 23119 23119 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold625 SAMTools SNP 23218 23218 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 23848 23848 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C126%2C0:99 scaffold625 SAMTools SNP 24292 24292 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold625 SAMTools SNP 25110 25110 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold625 SAMTools SNP 25139 25139 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C3%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold625 SAMTools SNP 25300 25300 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C4%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold625 SAMTools SNP 25636 25636 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C27%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold625 SAMTools SNP 25788 25788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold625 SAMTools SNP 25890 25890 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.031%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C237:99 scaffold625 SAMTools SNP 25941 25941 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.68%2C1.9e-18%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold625 SAMTools SNP 29175 29175 33.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold625 SAMTools SNP 29528 29528 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold625 SAMTools SNP 31690 31690 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 31750 31750 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold625 SAMTools SNP 41988 41988 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold625 SAMTools SNP 50006 50006 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold625 SAMTools SNP 51243 51243 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C12%2C82%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 53337 53337 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C0%2C9%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.02%2C0.43%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold625 SAMTools SNP 53339 53339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold625 SAMTools SNP 53714 53714 65.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold625 SAMTools SNP 60438 60438 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold625 SAMTools SNP 60470 60470 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold625 SAMTools SNP 61242 61242 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0131%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold625 SAMTools SNP 62655 62655 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold625 SAMTools SNP 63102 63102 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C32:35 scaffold625 SAMTools SNP 63466 63466 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold625 SAMTools SNP 64080 64080 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.31%2C9.4e-10%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C232:99 scaffold625 SAMTools SNP 64309 64309 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C18%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.0025%2C3.6e-09%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold625 SAMTools SNP 64794 64794 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C51%2C0:99 scaffold625 SAMTools SNP 65814 65814 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold625 SAMTools SNP 68474 68474 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold625 SAMTools SNP 68521 68521 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold625 SAMTools SNP 70746 70746 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold625 SAMTools SNP 71676 71676 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D181%2C56%2C135%2C35%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C3.4e-175%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold625 SAMTools SNP 72435 72435 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C198:65 scaffold625 SAMTools SNP 72559 72559 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C27%2C0:51 scaffold625 SAMTools SNP 72727 72727 68.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold625 SAMTools SNP 72830 72830 23 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold625 SAMTools SNP 72859 72859 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold625 SAMTools SNP 73526 73526 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold625 SAMTools SNP 73529 73529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold625 SAMTools SNP 75180 75180 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold625 SAMTools SNP 75568 75568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C13%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.054%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold625 SAMTools SNP 75973 75973 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold625 SAMTools SNP 76183 76183 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C239:99 scaffold625 SAMTools SNP 76713 76713 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C19%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.21%2C0.21%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C141:99 scaffold625 SAMTools SNP 77247 77247 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold625 SAMTools SNP 77696 77696 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C12%2C0:21 scaffold625 SAMTools SNP 77948 77948 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 78347 78347 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 80314 80314 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold625 SAMTools SNP 80332 80332 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold625 SAMTools SNP 84311 84311 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold625 SAMTools SNP 84349 84349 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 92170 92170 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 92530 92530 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold625 SAMTools SNP 92548 92548 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 92582 92582 88 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C14%2C5%2C117%2C0%2C114:16 scaffold625 SAMTools SNP 92599 92599 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold625 SAMTools SNP 93069 93069 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 93216 93216 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold625 SAMTools SNP 93826 93826 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold625 SAMTools SNP 93861 93861 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold625 SAMTools SNP 100935 100935 145 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.00032%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold625 SAMTools SNP 101404 101404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 102082 102082 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold625 SAMTools SNP 104492 104492 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold625 SAMTools SNP 105587 105587 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 107721 107721 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.38%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold625 SAMTools SNP 107784 107784 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 108164 108164 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C22%2C67%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 108636 108636 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C54%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 108732 108732 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D751%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C660%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 108927 108927 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C4%2C168%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 108936 108936 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C82%2C97%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-07%2C4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 109727 109727 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D3.43%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C28:31 scaffold625 SAMTools SNP 116738 116738 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold625 SAMTools SNP 116750 116750 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 121154 121154 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold625 SAMTools SNP 130941 130941 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C189:53 scaffold625 SAMTools SNP 131085 131085 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C14%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.67%2C6.1e-39%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold625 SAMTools SNP 131127 131127 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.31%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold625 SAMTools SNP 131136 131136 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C13%2C17%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.012%2C1.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold625 SAMTools SNP 131494 131494 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C44%2C0%2C17%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0044%2C0.43%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold625 SAMTools SNP 131506 131506 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C48%2C1%2C17%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.06%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold625 SAMTools SNP 131599 131599 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.018%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold625 SAMTools SNP 131809 131809 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C14%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold625 SAMTools SNP 132256 132256 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold625 SAMTools SNP 132373 132373 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C8%2C20%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.1%2C2.9e-12%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold625 SAMTools SNP 132403 132403 6.79 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C19%2C13%2C36%2C0%2C33:7 scaffold625 SAMTools SNP 132511 132511 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C102%2C8%2C60%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.16%2C2.1e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold625 SAMTools SNP 132517 132517 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C88%2C6%2C102%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.58%2C8e-116%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold625 SAMTools SNP 132756 132756 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold625 SAMTools SNP 133281 133281 89.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0200%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1.8e-05%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C14:17 scaffold625 SAMTools SNP 133663 133663 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.4%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C14:17 scaffold625 SAMTools SNP 133756 133756 188 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C255%2C0%2C221%2C255%2C218:99 scaffold625 SAMTools SNP 133809 133809 30.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold625 SAMTools SNP 134750 134750 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold625 SAMTools SNP 134792 134792 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.18%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold625 SAMTools SNP 134813 134813 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold625 SAMTools SNP 134858 134858 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D34%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.67%2C1.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold625 SAMTools SNP 134951 134951 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C17%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.0031%2C4.4e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold625 SAMTools SNP 135643 135643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 136501 136501 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold625 SAMTools SNP 136993 136993 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 136996 136996 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C131:36 scaffold625 SAMTools SNP 137116 137116 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C33%2C0:63 scaffold625 SAMTools SNP 138175 138175 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold625 SAMTools SNP 138581 138581 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold625 SAMTools SNP 138985 138985 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold625 SAMTools SNP 140071 140071 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C23%2C12%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 140112 140112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C19%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C3.5e-09%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 140145 140145 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C18%2C16%2C13%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.48%2C7.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold625 SAMTools SNP 140212 140212 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C46%2C0%2C21%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold625 SAMTools SNP 145146 145146 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.18%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold625 SAMTools SNP 145515 145515 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold625 SAMTools SNP 145518 145518 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C11%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.37%2C0.13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold625 SAMTools SNP 145981 145981 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold625 SAMTools SNP 145982 145982 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold625 SAMTools SNP 146235 146235 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C3%2C55%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold625 SAMTools SNP 146252 146252 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold625 SAMTools SNP 146291 146291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D41%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold625 SAMTools SNP 147239 147239 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold625 SAMTools SNP 151362 151362 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 153596 153596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D418%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C213%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 154069 154069 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C149%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C255%2C0:99 scaffold625 SAMTools SNP 154702 154702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C110%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 154717 154717 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C97%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 156251 156251 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold625 SAMTools SNP 156385 156385 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C6%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.032%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold625 SAMTools SNP 157184 157184 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C30%2C101%2C5%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.00069%2C0.087%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 158007 158007 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 158017 158017 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C120%2C46%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 158070 158070 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D702%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C165%2C171%2C128%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1.1e-05%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 159017 159017 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C89%2C3%2C13%3BMQ%3D46%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold625 SAMTools SNP 159683 159683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C52%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold625 SAMTools SNP 159713 159713 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C48%3BMQ%3D48%3BFQ%3D-155%3BPV4%3D1%2C1%2C0.4%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold625 SAMTools SNP 159725 159725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C6%3BMQ%3D48%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold625 SAMTools SNP 160183 160183 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.55%2C0.34%2C0.014%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold625 SAMTools SNP 160246 160246 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C29%2C2%2C57%3BMQ%3D49%3BFQ%3D225%3BPV4%3D5.2e-16%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 191885 191885 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold625 SAMTools SNP 220791 220791 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold625 SAMTools SNP 228167 228167 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold625 SAMTools SNP 232405 232405 164 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C24%2C0:45 scaffold625 SAMTools SNP 233140 233140 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C60%2C0:84 scaffold625 SAMTools SNP 233203 233203 24.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C21%2C0:37 scaffold625 SAMTools SNP 235871 235871 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold625 SAMTools SNP 238224 238224 5.55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C1%2C0:4 scaffold625 SAMTools SNP 239671 239671 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold625 SAMTools SNP 240751 240751 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 240840 240840 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold625 SAMTools SNP 241231 241231 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold625 SAMTools SNP 241590 241590 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold625 SAMTools SNP 241605 241605 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C171:99 scaffold625 SAMTools SNP 242487 242487 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.4%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C148:99 scaffold625 SAMTools SNP 242599 242599 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold625 SAMTools SNP 242607 242607 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 243149 243149 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold625 SAMTools SNP 248952 248952 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold625 SAMTools SNP 249030 249030 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 250607 250607 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 250706 250706 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.028%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C162:28 scaffold625 SAMTools SNP 251837 251837 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C24%2C0:45 scaffold625 SAMTools SNP 251921 251921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold625 SAMTools SNP 253433 253433 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C28%2C9%3BMQ%3D49%3BFQ%3D-51%3BPV4%3D1%2C0.23%2C0.37%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold625 SAMTools SNP 253472 253472 170 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D45%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C39%2C12%2C186%2C0%2C183:51 scaffold625 SAMTools SNP 308282 308282 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 326719 326719 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.3%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C69:72 scaffold625 SAMTools SNP 326731 326731 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold625 SAMTools SNP 329504 329504 52.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold625 SAMTools SNP 329534 329534 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold625 SAMTools SNP 333899 333899 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C19%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C6.2e-32%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C223:80 scaffold625 SAMTools SNP 334439 334439 55.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold625 SAMTools SNP 334457 334457 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C54%2C0:99 scaffold625 SAMTools SNP 334730 334730 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold625 SAMTools SNP 334823 334823 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C7%2C40%3BMQ%3D49%3BFQ%3D207%3BPV4%3D0.25%2C2.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold625 SAMTools SNP 334831 334831 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C3%2C4%3BMQ%3D49%3BFQ%3D162%3BPV4%3D0.019%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold625 SAMTools SNP 335576 335576 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold625 SAMTools SNP 335893 335893 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold625 SAMTools SNP 337449 337449 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.17%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold625 SAMTools SNP 339515 339515 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C39%2C0%2C14%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.1%2C8.4e-10%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold625 SAMTools SNP 341794 341794 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C1%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.076%2C0.39%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold625 SAMTools SNP 342056 342056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C7%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold625 SAMTools SNP 342097 342097 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D178%3BPV4%3D5.5e-07%2C0.27%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold625 SAMTools SNP 342130 342130 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C12%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1.6e-08%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold625 SAMTools SNP 343764 343764 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C26%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C249:99 scaffold625 SAMTools SNP 393010 393010 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold625 SAMTools SNP 393013 393013 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C3%2C1%3BMQ%3D47%3BFQ%3D28%3BPV4%3D1%2C1%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold625 SAMTools SNP 393030 393030 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C23%2C1%3BMQ%3D47%3BFQ%3D198%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold625 SAMTools SNP 393048 393048 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C10%2C10%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.6%2C0.0082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold625 SAMTools SNP 393810 393810 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold625 SAMTools SNP 393819 393819 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold625 SAMTools SNP 393824 393824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C14%3BMQ%3D49%3BFQ%3D52%3BPV4%3D1%2C0.054%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold625 SAMTools SNP 393842 393842 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C4%3BMQ%3D47%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold625 SAMTools SNP 424264 424264 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C31%3BMQ%3D45%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold625 SAMTools SNP 424296 424296 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C9%2C7%3BMQ%3D45%3BFQ%3D216%3BPV4%3D0.0043%2C0.18%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold625 SAMTools SNP 428012 428012 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold625 SAMTools SNP 428029 428029 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 437086 437086 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.023%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C230:84 scaffold625 SAMTools SNP 437957 437957 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold625 SAMTools SNP 438039 438039 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 438854 438854 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 440682 440682 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold625 SAMTools SNP 440688 440688 84 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold625 SAMTools SNP 440831 440831 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C206:99 scaffold625 SAMTools SNP 440927 440927 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 441451 441451 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C21%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.28%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold625 SAMTools SNP 441493 441493 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold625 SAMTools SNP 441517 441517 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold625 SAMTools SNP 442205 442205 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 444134 444134 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 444690 444690 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 444744 444744 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C35:38 scaffold625 SAMTools SNP 444753 444753 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold625 SAMTools SNP 444765 444765 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold625 SAMTools SNP 444883 444883 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold625 SAMTools SNP 445300 445300 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold625 SAMTools SNP 445812 445812 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold625 SAMTools SNP 445995 445995 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold625 SAMTools SNP 446018 446018 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 447278 447278 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold625 SAMTools SNP 447322 447322 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 448441 448441 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 448450 448450 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 448454 448454 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 448926 448926 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 448943 448943 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold625 SAMTools SNP 449135 449135 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold625 SAMTools SNP 449441 449441 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 449447 449447 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 460360 460360 12 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold625 SAMTools SNP 460637 460637 19.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C12%3BMQ%3D39%3BFQ%3D22%3BPV4%3D0.025%2C1.1e-15%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C140:52 scaffold625 SAMTools SNP 461993 461993 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C1%2C7%3BMQ%3D48%3BFQ%3D130%3BPV4%3D2e-05%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold625 SAMTools SNP 464891 464891 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C34%3BMQ%3D48%3BFQ%3D215%3BPV4%3D1%2C0.05%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C251:99 scaffold625 SAMTools SNP 479168 479168 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 479195 479195 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 479228 479228 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 479261 479261 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 479648 479648 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 480029 480029 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 481132 481132 21.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold625 SAMTools SNP 481383 481383 21.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D21%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold625 SAMTools SNP 488063 488063 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 489031 489031 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 489516 489516 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 491531 491531 23.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold625 SAMTools SNP 493812 493812 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold625 SAMTools SNP 495197 495197 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C6%2C6%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.73%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold625 SAMTools SNP 495212 495212 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold625 SAMTools SNP 495628 495628 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.037%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold625 SAMTools SNP 495705 495705 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D30%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.5e-13%2C1%2C3.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold625 SAMTools SNP 497173 497173 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C42%2C0:81 scaffold625 SAMTools SNP 497745 497745 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0017%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C0.071%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold625 SAMTools SNP 498476 498476 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold625 SAMTools SNP 502072 502072 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold625 SAMTools SNP 505704 505704 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold625 SAMTools SNP 505722 505722 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold625 SAMTools SNP 506475 506475 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold625 SAMTools SNP 506650 506650 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold625 SAMTools SNP 506663 506663 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C7%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold625 SAMTools SNP 509270 509270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold625 SAMTools SNP 509321 509321 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.37%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C228:39 scaffold625 SAMTools SNP 509798 509798 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold625 SAMTools SNP 510508 510508 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 510511 510511 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 511013 511013 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold625 SAMTools SNP 511019 511019 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold625 SAMTools SNP 511067 511067 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C71:47 scaffold625 SAMTools SNP 527717 527717 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C21:24 scaffold625 SAMTools SNP 527719 527719 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 528907 528907 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C23:26 scaffold625 SAMTools SNP 534887 534887 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C100%2C0%2C141%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-06%2C1.9e-14%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 535575 535575 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.33%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 535620 535620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C28%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 536177 536177 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C53%2C58%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 536551 536551 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C60%2C13%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 536763 536763 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 536828 536828 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold625 SAMTools SNP 537013 537013 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 537246 537246 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C14%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 537252 537252 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C13%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 540559 540559 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 540607 540607 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C11%2C137%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 542268 542268 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C5%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 542421 542421 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C13%2C9%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.54%2C2.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold625 SAMTools SNP 543047 543047 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C122%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C255%2C0:99 scaffold625 SAMTools SNP 543076 543076 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C8%2C58%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.59%2C1.1e-110%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold625 SAMTools SNP 543251 543251 178 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D228%2C11%2C76%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold625 SAMTools SNP 543302 543302 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D768%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D215%2C185%2C194%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.94%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 543590 543590 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D776%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C343%2C44%2C290%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 543928 543928 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 544061 544061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C50%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold625 SAMTools SNP 544103 544103 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 544242 544242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 544516 544516 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D108%2C46%2C21%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 544522 544522 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C57%2C87%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-08%2C4.9e-06%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 544534 544534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C118%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 544672 544672 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C30%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 544974 544974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C27%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 545725 545725 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold625 SAMTools SNP 546087 546087 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold625 SAMTools SNP 549220 549220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D490%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D178%2C20%2C265%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 549712 549712 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C146%2C0%2C72%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold625 SAMTools SNP 549775 549775 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C27%2C0:51 scaffold625 SAMTools SNP 549807 549807 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold625 SAMTools SNP 550860 550860 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold625 SAMTools SNP 551750 551750 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C26:29 scaffold625 SAMTools SNP 552151 552151 44.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold625 SAMTools SNP 552238 552238 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold625 SAMTools SNP 553710 553710 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold625 SAMTools SNP 557598 557598 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold625 SAMTools SNP 558277 558277 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 558282 558282 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 559445 559445 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0061%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold625 SAMTools SNP 559937 559937 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C19%2C28%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 560707 560707 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C76%2C38%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.8e-05%2C3.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 563454 563454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C27%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold625 SAMTools SNP 564587 564587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C24%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 564642 564642 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C6%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.12%2C0.4%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold625 SAMTools SNP 569016 569016 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold625 SAMTools SNP 569339 569339 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 571939 571939 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold625 SAMTools SNP 571968 571968 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 587706 587706 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 587709 587709 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 588760 588760 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C226:99 scaffold625 SAMTools SNP 589169 589169 106 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C36%2C21%2C132%2C0%2C129:27 scaffold625 SAMTools SNP 589202 589202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold625 SAMTools SNP 589211 589211 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.39%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C241:99 scaffold625 SAMTools SNP 589511 589511 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C228:99 scaffold625 SAMTools SNP 594735 594735 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 596889 596889 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold625 SAMTools SNP 596919 596919 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold625 SAMTools SNP 597734 597734 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.12%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold625 SAMTools SNP 606593 606593 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold625 SAMTools SNP 606648 606648 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold625 SAMTools SNP 606910 606910 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold625 SAMTools SNP 607055 607055 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 607390 607390 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold625 SAMTools SNP 609506 609506 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 621243 621243 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold625 SAMTools SNP 621788 621788 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold625 SAMTools SNP 622378 622378 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 622389 622389 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold625 SAMTools SNP 624341 624341 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold625 SAMTools SNP 624342 624342 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold625 SAMTools SNP 624345 624345 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold625 SAMTools SNP 626551 626551 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 634302 634302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C3%2C89%3BMQ%3D50%3BFQ%3D-133%3BPV4%3D0.00055%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C106%2C0:99 scaffold625 SAMTools SNP 634854 634854 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C8%2C0%3BMQ%3D49%3BFQ%3D133%3BPV4%3D0.00022%2C0.41%2C0.081%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold625 SAMTools SNP 635157 635157 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D0.43%2C1%2C0.039%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C223:31 scaffold625 SAMTools SNP 635199 635199 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 636177 636177 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C9%3BMQ%3D45%3BFQ%3D-220%3BPV4%3D1%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold625 SAMTools SNP 636825 636825 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C153%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C255%2C0:99 scaffold625 SAMTools SNP 637158 637158 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C30%2C0:57 scaffold625 SAMTools SNP 639899 639899 3.69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C15%2C0:13 scaffold625 SAMTools SNP 642655 642655 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold625 SAMTools SNP 643065 643065 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold625 SAMTools SNP 643088 643088 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold625 SAMTools SNP 646643 646643 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold625 SAMTools SNP 648653 648653 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold625 SAMTools SNP 650933 650933 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold625 SAMTools SNP 651462 651462 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold625 SAMTools SNP 651477 651477 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.38%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C176:77 scaffold625 SAMTools SNP 651690 651690 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold625 SAMTools SNP 652436 652436 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold625 SAMTools SNP 652452 652452 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold625 SAMTools SNP 654917 654917 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold625 SAMTools SNP 654953 654953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold625 SAMTools SNP 655098 655098 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C39%2C0:74 scaffold625 SAMTools SNP 658442 658442 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold625 SAMTools SNP 658476 658476 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 660879 660879 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold625 SAMTools SNP 660949 660949 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 660975 660975 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold625 SAMTools SNP 661272 661272 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.36%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 661299 661299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C16%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 661508 661508 112 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold625 SAMTools SNP 661577 661577 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 662166 662166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 662239 662239 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C25%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.52%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold625 SAMTools SNP 663556 663556 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold625 SAMTools SNP 663843 663843 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.11%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C245:99 scaffold625 SAMTools SNP 663852 663852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold625 SAMTools SNP 664400 664400 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold625 SAMTools SNP 664647 664647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold625 SAMTools SNP 665174 665174 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C1%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 665578 665578 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C50%2C59%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 667329 667329 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold625 SAMTools SNP 667820 667820 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C218:99 scaffold625 SAMTools SNP 667938 667938 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C121:42 scaffold625 SAMTools SNP 668410 668410 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C20%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.38%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C251:99 scaffold625 SAMTools SNP 670169 670169 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold625 SAMTools SNP 670549 670549 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold625 SAMTools SNP 670887 670887 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold625 SAMTools SNP 670917 670917 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold625 SAMTools SNP 671217 671217 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold625 SAMTools SNP 671331 671331 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 672957 672957 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 672981 672981 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 673014 673014 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 673471 673471 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.0059%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold625 SAMTools SNP 674275 674275 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold625 SAMTools SNP 674304 674304 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold625 SAMTools SNP 674422 674422 149 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C51%2C0:99 scaffold625 SAMTools SNP 675065 675065 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold625 SAMTools SNP 675398 675398 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold625 SAMTools SNP 675834 675834 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 676648 676648 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 682320 682320 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C29%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 682420 682420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C18%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold625 SAMTools SNP 682672 682672 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C2%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.13%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 682804 682804 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 682969 682969 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold625 SAMTools SNP 684109 684109 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold625 SAMTools SNP 691409 691409 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C205%2C0:99 scaffold625 SAMTools SNP 692915 692915 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 693619 693619 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 693739 693739 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.13%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold625 SAMTools SNP 693823 693823 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 693841 693841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 694832 694832 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.3%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold625 SAMTools SNP 694886 694886 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.15%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold625 SAMTools SNP 695184 695184 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.3%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold625 SAMTools SNP 695521 695521 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.44%2C0.031%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C237:34 scaffold625 SAMTools SNP 697627 697627 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.039%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold625 SAMTools SNP 700920 700920 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.009%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold625 SAMTools SNP 702182 702182 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 702369 702369 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold625 SAMTools SNP 702375 702375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 706276 706276 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold625 SAMTools SNP 714756 714756 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C9.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C248:50 scaffold625 SAMTools SNP 714943 714943 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C78%2C0:99 scaffold625 SAMTools SNP 715012 715012 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.082%2C1e-17%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold625 SAMTools SNP 715556 715556 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 716047 716047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C72%2C16%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 717651 717651 9.08 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold625 SAMTools SNP 717995 717995 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C32%2C29%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0022%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 718058 718058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C45%2C20%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 718478 718478 94 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C78%2C0:99 scaffold625 SAMTools SNP 719211 719211 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.49%3BPV4%3D0.17%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C32:35 scaffold625 SAMTools SNP 719347 719347 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C39%2C0:75 scaffold625 SAMTools SNP 719546 719546 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C46%2C39%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C3.5e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 721955 721955 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold625 SAMTools SNP 722794 722794 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 722910 722910 48.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold625 SAMTools SNP 724447 724447 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C18%2C0:33 scaffold625 SAMTools SNP 726908 726908 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C41:44 scaffold625 SAMTools SNP 727921 727921 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 728422 728422 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold625 SAMTools SNP 728673 728673 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C45%2C0:87 scaffold625 SAMTools SNP 729608 729608 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C27%2C0:51 scaffold625 SAMTools SNP 732085 732085 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold625 SAMTools SNP 734604 734604 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.45%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold625 SAMTools SNP 734745 734745 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold625 SAMTools SNP 734787 734787 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold625 SAMTools SNP 739066 739066 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold625 SAMTools SNP 739137 739137 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C35:38 scaffold625 SAMTools SNP 742026 742026 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 750524 750524 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold625 SAMTools SNP 750621 750621 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C96%2C65%2C76%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.24%2C2.5e-257%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold625 SAMTools SNP 750702 750702 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C60%2C1%2C48%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1.5e-05%2C2.5e-25%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold625 SAMTools SNP 750831 750831 184 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C10%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C138%2C0:99 scaffold625 SAMTools SNP 750992 750992 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold625 SAMTools SNP 751200 751200 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C16%2C14%3BMQ%3D50%3BFQ%3D92%3BPV4%3D4e-07%2C5.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C251:99 scaffold625 SAMTools SNP 751482 751482 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C81%2C14%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D3.6e-10%2C5.6e-24%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold625 SAMTools SNP 751500 751500 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C77%2C11%2C6%3BMQ%3D50%3BFQ%3D119%3BPV4%3D7.3e-07%2C6e-15%2C1%2C2.8e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold625 SAMTools SNP 752047 752047 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C10%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 752859 752859 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold625 SAMTools SNP 752868 752868 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C39%2C0:75 scaffold625 SAMTools SNP 752964 752964 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0017%2C0.16%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold625 SAMTools SNP 753127 753127 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C1%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold625 SAMTools SNP 753168 753168 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C19%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold625 SAMTools SNP 753190 753190 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D131%3BPV4%3D6.5e-07%2C1%2C1%2C6.1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold625 SAMTools SNP 753234 753234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C11%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold625 SAMTools SNP 753520 753520 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C47%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold625 SAMTools SNP 753582 753582 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C16%2C142%2C22%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.47%2C1.9e-203%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold625 SAMTools SNP 754033 754033 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C102%2C0:99 scaffold625 SAMTools SNP 754175 754175 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold625 SAMTools SNP 754367 754367 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0023%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 754388 754388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold625 SAMTools SNP 754399 754399 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.35%2C0.19%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold625 SAMTools SNP 754803 754803 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold625 SAMTools SNP 754854 754854 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C3%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold625 SAMTools SNP 755220 755220 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 755462 755462 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C24%2C0:45 scaffold625 SAMTools SNP 755514 755514 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C27%2C0:51 scaffold625 SAMTools SNP 755630 755630 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold625 SAMTools SNP 755636 755636 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold625 SAMTools SNP 756033 756033 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold625 SAMTools SNP 756214 756214 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold625 SAMTools SNP 756239 756239 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 756543 756543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.075%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 756585 756585 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.25%2C0.2%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold625 SAMTools SNP 756616 756616 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C30%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold625 SAMTools SNP 756963 756963 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C5.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C132:58 scaffold625 SAMTools SNP 757001 757001 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.51%2C8.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold625 SAMTools SNP 757126 757126 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold625 SAMTools SNP 757168 757168 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C30%2C0:57 scaffold625 SAMTools SNP 757428 757428 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold625 SAMTools SNP 757832 757832 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold625 SAMTools SNP 758187 758187 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C2.6e-11%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C33:36 scaffold625 SAMTools SNP 758956 758956 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C63%2C0:99 scaffold625 SAMTools SNP 758970 758970 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C8%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.73%2C4.8e-32%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold625 SAMTools SNP 759348 759348 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C32%2C12%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.81%2C6.1e-45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold625 SAMTools SNP 759466 759466 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold625 SAMTools SNP 759591 759591 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold625 SAMTools SNP 759786 759786 116 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C18%2C143%2C0%2C140:21 scaffold625 SAMTools SNP 760745 760745 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.37%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C132:99 scaffold625 SAMTools SNP 760862 760862 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold625 SAMTools SNP 760928 760928 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold625 SAMTools SNP 761392 761392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold625 SAMTools SNP 766308 766308 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 767136 767136 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold625 SAMTools SNP 767151 767151 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1.1e-10%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold625 SAMTools SNP 771112 771112 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.14%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold625 SAMTools SNP 771228 771228 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 772580 772580 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold625 SAMTools SNP 773141 773141 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C33%2C0:63 scaffold625 SAMTools SNP 773600 773600 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.19%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C213:99 scaffold625 SAMTools SNP 775204 775204 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C237:60 scaffold625 SAMTools SNP 777380 777380 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C33%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 777595 777595 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.98%3BPV4%3D0.25%2C0.0013%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold625 SAMTools SNP 777670 777670 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 777712 777712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 778255 778255 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C15%2C10%2C2%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C2.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold625 SAMTools SNP 778266 778266 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold625 SAMTools SNP 778894 778894 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.27%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 779073 779073 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 779253 779253 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 779846 779846 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C5%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.72%2C0.0014%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold625 SAMTools SNP 779945 779945 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.0048%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold625 SAMTools SNP 779969 779969 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold625 SAMTools SNP 780131 780131 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold625 SAMTools SNP 780392 780392 136 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C6%2C9%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold625 SAMTools SNP 780407 780407 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C24%2C3%2C10%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.5%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold625 SAMTools SNP 780543 780543 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.093%2C9.4e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold625 SAMTools SNP 780693 780693 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C15%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold625 SAMTools SNP 780950 780950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold625 SAMTools SNP 781113 781113 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 782082 782082 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold625 SAMTools SNP 782401 782401 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C19%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold625 SAMTools SNP 783187 783187 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C8%2C75%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 783313 783313 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C75%2C7%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C2.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 783952 783952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C52%2C9%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 784336 784336 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold625 SAMTools SNP 784835 784835 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C186:99 scaffold625 SAMTools SNP 786200 786200 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.06%3BPV4%3D1%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C33:29 scaffold625 SAMTools SNP 786489 786489 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C220:70 scaffold625 SAMTools SNP 787730 787730 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D250%2C28%2C112%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 787742 787742 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D285%2C27%2C146%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1.7e-12%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 787838 787838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D430%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C312%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 788622 788622 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C9%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 788691 788691 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C10%2C2%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.16%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold625 SAMTools SNP 793498 793498 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold625 SAMTools SNP 793507 793507 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold625 SAMTools SNP 795145 795145 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold625 SAMTools SNP 795184 795184 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 795190 795190 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold625 SAMTools SNP 795940 795940 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold625 SAMTools SNP 797157 797157 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold625 SAMTools SNP 797172 797172 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 798051 798051 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold625 SAMTools SNP 798078 798078 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 798378 798378 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold625 SAMTools SNP 799433 799433 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C18%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold625 SAMTools SNP 799499 799499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C20%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold625 SAMTools SNP 800740 800740 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C3%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.13%2C2e-07%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold625 SAMTools SNP 801043 801043 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold625 SAMTools SNP 801144 801144 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 801224 801224 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C47%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 801429 801429 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C2%2C38%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.4%2C2.6e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold625 SAMTools SNP 801510 801510 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold625 SAMTools SNP 801992 801992 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 802182 802182 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C44%2C54%3BMQ%3D50%3BFQ%3D-275%3BPV4%3D0.45%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C248%2C0:99 scaffold625 SAMTools SNP 803193 803193 196 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C3%2C212%2C0%2C209:51 scaffold625 SAMTools SNP 803208 803208 82.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C15%2C0:27 scaffold625 SAMTools SNP 804444 804444 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 805211 805211 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C2%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 805250 805250 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C43%2C0%2C15%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold625 SAMTools SNP 806650 806650 187 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D649%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C36%2C0%2C216%2C22%2C213:69 scaffold625 SAMTools SNP 806961 806961 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold625 SAMTools SNP 807168 807168 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.32%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold625 SAMTools SNP 807243 807243 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.31%2C1.9e-08%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold625 SAMTools SNP 807261 807261 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold625 SAMTools SNP 807306 807306 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold625 SAMTools SNP 807354 807354 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C30%2C20%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.039%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold625 SAMTools SNP 807846 807846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C12%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold625 SAMTools SNP 807950 807950 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C26%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold625 SAMTools SNP 808963 808963 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold625 SAMTools SNP 809935 809935 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0055%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold625 SAMTools SNP 809976 809976 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.53%2C4.2e-25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold625 SAMTools SNP 810047 810047 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C9%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.34%2C5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C245:43 scaffold625 SAMTools SNP 810433 810433 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C114%2C0:99 scaffold625 SAMTools SNP 810641 810641 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C60%2C0:99 scaffold625 SAMTools SNP 812817 812817 14.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold625 SAMTools SNP 814995 814995 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.0032%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 817507 817507 15.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold625 SAMTools SNP 818634 818634 5.47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D-5.03%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C24:28 scaffold625 SAMTools SNP 819280 819280 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C27%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold625 SAMTools SNP 821668 821668 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold625 SAMTools SNP 822320 822320 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold625 SAMTools SNP 827598 827598 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C8%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold625 SAMTools SNP 828203 828203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C35%2C84%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C2.3e-11%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 828269 828269 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C102%2C16%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.018%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 828696 828696 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 828765 828765 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 829967 829967 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C15%2C0:27 scaffold625 SAMTools SNP 831164 831164 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold625 SAMTools SNP 831692 831692 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C52%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold625 SAMTools SNP 832556 832556 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C31%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 832616 832616 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D49%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold625 SAMTools SNP 832634 832634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C36%2C36%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C2e-07%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 833282 833282 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold625 SAMTools SNP 833349 833349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold625 SAMTools SNP 833420 833420 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold625 SAMTools SNP 835507 835507 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold625 SAMTools SNP 836048 836048 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C41%2C31%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold625 SAMTools SNP 836198 836198 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold625 SAMTools SNP 838730 838730 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold625 SAMTools SNP 838745 838745 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold626 SAMTools SNP 196 196 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 204 204 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 309 309 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 1083 1083 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold626 SAMTools SNP 1493 1493 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C110:80 scaffold626 SAMTools SNP 1517 1517 91 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold626 SAMTools SNP 1777 1777 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 1802 1802 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C188:28 scaffold626 SAMTools SNP 2741 2741 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold626 SAMTools SNP 2774 2774 56 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.097%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold626 SAMTools SNP 3090 3090 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold626 SAMTools SNP 3139 3139 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold626 SAMTools SNP 5536 5536 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C26%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.008%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C236:99 scaffold626 SAMTools SNP 5592 5592 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C45%2C0:87 scaffold626 SAMTools SNP 5734 5734 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold626 SAMTools SNP 6102 6102 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.56%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold626 SAMTools SNP 26682 26682 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 26713 26713 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold626 SAMTools SNP 36058 36058 37.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold626 SAMTools SNP 36386 36386 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C7%2C14%3BMQ%3D50%3BFQ%3D69%3BPV4%3D2.5e-05%2C2.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold626 SAMTools SNP 36392 36392 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.083%2C1.9e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold626 SAMTools SNP 36653 36653 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold626 SAMTools SNP 37407 37407 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold626 SAMTools SNP 37588 37588 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C153:99 scaffold626 SAMTools SNP 38493 38493 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.53%2C5.1e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold626 SAMTools SNP 38779 38779 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold626 SAMTools SNP 39615 39615 212 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.06%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold626 SAMTools SNP 39760 39760 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C3%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold626 SAMTools SNP 39803 39803 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C0.28%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C228:99 scaffold626 SAMTools SNP 40101 40101 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold626 SAMTools SNP 53042 53042 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold626 SAMTools SNP 53591 53591 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold626 SAMTools SNP 53969 53969 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold626 SAMTools SNP 54243 54243 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold626 SAMTools SNP 54593 54593 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold626 SAMTools SNP 55173 55173 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C6.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 55347 55347 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C69%2C0:99 scaffold626 SAMTools SNP 55890 55890 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C27%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C132%2C0:99 scaffold626 SAMTools SNP 65316 65316 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold626 SAMTools SNP 65594 65594 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold626 SAMTools SNP 67100 67100 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold626 SAMTools SNP 67908 67908 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold626 SAMTools SNP 68335 68335 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold626 SAMTools SNP 68389 68389 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold626 SAMTools SNP 68552 68552 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold626 SAMTools SNP 70292 70292 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold626 SAMTools SNP 70358 70358 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold626 SAMTools SNP 70373 70373 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold626 SAMTools SNP 71393 71393 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 71930 71930 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 73848 73848 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold626 SAMTools SNP 74117 74117 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold626 SAMTools SNP 74132 74132 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold626 SAMTools SNP 74180 74180 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold626 SAMTools SNP 74769 74769 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C79:82 scaffold626 SAMTools SNP 161286 161286 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0076%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C222:28 scaffold626 SAMTools SNP 161656 161656 201 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C15%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C49:52 scaffold626 SAMTools SNP 161678 161678 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.12%2C0.012%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C230:55 scaffold626 SAMTools SNP 162260 162260 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold626 SAMTools SNP 162261 162261 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold626 SAMTools SNP 162439 162439 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold626 SAMTools SNP 167937 167937 68.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C12%2C0:21 scaffold626 SAMTools SNP 168801 168801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C69%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold626 SAMTools SNP 171823 171823 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 174190 174190 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 174810 174810 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold626 SAMTools SNP 177995 177995 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 178043 178043 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold626 SAMTools SNP 181423 181423 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold626 SAMTools SNP 185514 185514 95 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C122%2C68%2C130%2C0%2C109:99 scaffold626 SAMTools SNP 185523 185523 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C36%2C0:69 scaffold626 SAMTools SNP 185635 185635 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C0.37%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold626 SAMTools SNP 185812 185812 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C195:30 scaffold626 SAMTools SNP 185813 185813 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold626 SAMTools SNP 185927 185927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold626 SAMTools SNP 185951 185951 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C6%2C55%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 185969 185969 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D284%2C27%2C87%2C7%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.83%2C1%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold626 SAMTools SNP 186002 186002 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D577%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D285%2C98%2C152%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 186951 186951 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D648%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D224%2C135%2C198%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 187236 187236 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D191%2C115%2C148%2C174%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.3e-05%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 187273 187273 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D925%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C81%2C33%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold626 SAMTools SNP 187858 187858 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D536%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.0052%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold626 SAMTools SNP 188161 188161 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C94%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold626 SAMTools SNP 188336 188336 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C91%2C3%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.00052%2C0.0017%2C1%2C2.6e-37;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C162:49 scaffold626 SAMTools SNP 188367 188367 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C75%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold626 SAMTools SNP 188552 188552 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold626 SAMTools SNP 188597 188597 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold626 SAMTools SNP 188628 188628 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold626 SAMTools SNP 188637 188637 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.011%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold626 SAMTools SNP 188646 188646 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0071%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold626 SAMTools SNP 188661 188661 182 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C14%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.0075%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold626 SAMTools SNP 188987 188987 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C2%2C13%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold626 SAMTools SNP 189248 189248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold626 SAMTools SNP 189269 189269 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D28%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold626 SAMTools SNP 189309 189309 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C84%2C0:99 scaffold626 SAMTools SNP 189326 189326 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C90%2C0:99 scaffold626 SAMTools SNP 189347 189347 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold626 SAMTools SNP 189359 189359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold626 SAMTools SNP 189719 189719 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C255%2C33%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold626 SAMTools SNP 189869 189869 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C208%2C4%2C71%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold626 SAMTools SNP 190256 190256 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C42%2C0:81 scaffold626 SAMTools SNP 190268 190268 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D56.9%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C84:87 scaffold626 SAMTools SNP 190393 190393 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C21:24 scaffold626 SAMTools SNP 190397 190397 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold626 SAMTools SNP 190822 190822 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold626 SAMTools SNP 190857 190857 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold626 SAMTools SNP 193806 193806 51.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold626 SAMTools SNP 193818 193818 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold626 SAMTools SNP 194166 194166 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C21%2C0:39 scaffold626 SAMTools SNP 197437 197437 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold626 SAMTools SNP 198644 198644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold626 SAMTools SNP 202759 202759 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C27%2C0:51 scaffold626 SAMTools SNP 202844 202844 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.17%2C5.2e-06%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C156:41 scaffold626 SAMTools SNP 203213 203213 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold626 SAMTools SNP 204252 204252 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold626 SAMTools SNP 207048 207048 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 207078 207078 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 207105 207105 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 207414 207414 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 209402 209402 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold626 SAMTools SNP 209414 209414 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold626 SAMTools SNP 211361 211361 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C197:99 scaffold626 SAMTools SNP 211711 211711 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.28%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold626 SAMTools SNP 211737 211737 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.094%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold626 SAMTools SNP 211783 211783 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C15%2C0:27 scaffold626 SAMTools SNP 212100 212100 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.36%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C82:85 scaffold626 SAMTools SNP 212408 212408 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 212433 212433 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 212450 212450 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold626 SAMTools SNP 213141 213141 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 214138 214138 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold626 SAMTools SNP 217003 217003 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C2%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold626 SAMTools SNP 217909 217909 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C0%2C21%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C2.8e-18%2C1%2C3.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C247:99 scaffold626 SAMTools SNP 218639 218639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.39%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 220178 220178 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 220189 220189 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C22%2C11%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.21%2C0.069%2C1%2C4.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold626 SAMTools SNP 220250 220250 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.28%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold626 SAMTools SNP 221486 221486 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C2%2C12%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.092%2C0.0016%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C248:99 scaffold626 SAMTools SNP 224680 224680 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C30%2C0:57 scaffold626 SAMTools SNP 224790 224790 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 224990 224990 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0148%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold626 SAMTools SNP 225067 225067 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold626 SAMTools SNP 225342 225342 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0041%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C32:35 scaffold626 SAMTools SNP 225934 225934 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 226045 226045 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C45%2C0:87 scaffold626 SAMTools SNP 250136 250136 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 255551 255551 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 256227 256227 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 270538 270538 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D0.33%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold626 SAMTools SNP 270569 270569 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold626 SAMTools SNP 270786 270786 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold626 SAMTools SNP 286983 286983 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C42:45 scaffold626 SAMTools SNP 313768 313768 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C0%3BMQ%3D40%3BFQ%3D10.4%3BPV4%3D0.45%2C3.4e-08%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C73:39 scaffold626 SAMTools SNP 330105 330105 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold626 SAMTools SNP 416262 416262 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold626 SAMTools SNP 416306 416306 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold626 SAMTools SNP 442079 442079 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold626 SAMTools SNP 442590 442590 197 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C21%2C0:39 scaffold626 SAMTools SNP 471915 471915 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C62%2C6%2C42%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.022%2C3e-109%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold626 SAMTools SNP 472505 472505 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C231:99 scaffold626 SAMTools SNP 472511 472511 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0059%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C226:99 scaffold626 SAMTools SNP 473313 473313 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.41%2C0.18%2C1%2C5.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold626 SAMTools SNP 474095 474095 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold626 SAMTools SNP 474107 474107 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold626 SAMTools SNP 503554 503554 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold626 SAMTools SNP 528207 528207 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold626 SAMTools SNP 542923 542923 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold626 SAMTools SNP 558791 558791 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D32%3BFQ%3D10.3%3BPV4%3D1%2C0.00078%2C0.39%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C39:40 scaffold626 SAMTools SNP 569769 569769 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold626 SAMTools SNP 594876 594876 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C2%3BMQ%3D44%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold626 SAMTools SNP 595344 595344 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D49%3BFQ%3D172%3BPV4%3D1%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C199:99 scaffold626 SAMTools SNP 595384 595384 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold63 SAMTools SNP 850 850 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold63 SAMTools SNP 2963 2963 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 3649 3649 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D13%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C45%2C0:57 scaffold63 SAMTools SNP 3986 3986 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold63 SAMTools SNP 4037 4037 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D23%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold63 SAMTools SNP 7095 7095 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C73%2C51%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 7317 7317 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C105%2C190%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 7597 7597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D216%2C14%2C103%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 7636 7636 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D446%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C135%2C42%2C218%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 12892 12892 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D407%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C213%2C20%2C136%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 12920 12920 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C179%2C2%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 17199 17199 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C76:30 scaffold63 SAMTools SNP 17517 17517 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C45%2C0:87 scaffold63 SAMTools SNP 18152 18152 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.077%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold63 SAMTools SNP 19823 19823 35.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold63 SAMTools SNP 20208 20208 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold63 SAMTools SNP 21065 21065 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold63 SAMTools SNP 21079 21079 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold63 SAMTools SNP 26514 26514 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.25%2C7.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold63 SAMTools SNP 65129 65129 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold63 SAMTools SNP 69887 69887 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold63 SAMTools SNP 69932 69932 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C198:31 scaffold63 SAMTools SNP 70128 70128 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold63 SAMTools SNP 70172 70172 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold63 SAMTools SNP 70207 70207 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold63 SAMTools SNP 70641 70641 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold63 SAMTools SNP 71908 71908 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 72129 72129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 76078 76078 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 76445 76445 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold63 SAMTools SNP 76469 76469 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold63 SAMTools SNP 76529 76529 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.24%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold63 SAMTools SNP 78516 78516 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.15%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold63 SAMTools SNP 78539 78539 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold63 SAMTools SNP 78714 78714 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold63 SAMTools SNP 78752 78752 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold63 SAMTools SNP 78767 78767 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold63 SAMTools SNP 81883 81883 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.11%2C0.00017%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C208:50 scaffold63 SAMTools SNP 82554 82554 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold63 SAMTools SNP 84624 84624 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C42%2C0:81 scaffold63 SAMTools SNP 84852 84852 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D29.7%3BPV4%3D0.52%2C7.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C57:60 scaffold63 SAMTools SNP 84885 84885 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D0.4%2C0.0067%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C77:62 scaffold63 SAMTools SNP 85632 85632 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.087%2C1.6e-05%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold63 SAMTools SNP 86100 86100 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.048%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C71:30 scaffold63 SAMTools SNP 86105 86105 17.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold63 SAMTools SNP 93038 93038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D34%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold63 SAMTools SNP 93373 93373 9.63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D17%3BFQ%3D-28%3BPV4%3D1%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold63 SAMTools SNP 97631 97631 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 97809 97809 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 171579 171579 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold63 SAMTools SNP 201822 201822 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C63%2C0:99 scaffold63 SAMTools SNP 201831 201831 98.1 . . REF=N;ALT=C,A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C33%2C12%2C119%2C0%2C116:39 scaffold63 SAMTools SNP 225019 225019 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.12%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C224:99 scaffold63 SAMTools SNP 225252 225252 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C64%2C11%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D3.4e-06%2C1%2C0.0043%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold63 SAMTools SNP 225585 225585 34.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold63 SAMTools SNP 226117 226117 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C4%2C66%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.0018%2C0.093%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 226131 226131 136 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C13%2C32%2C1%3BMQ%3D48%3BFQ%3D139%3BPV4%3D0.19%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold63 SAMTools SNP 226888 226888 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C47%3BMQ%3D23%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C141%2C0:99 scaffold63 SAMTools SNP 227844 227844 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D38%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C110:34 scaffold63 SAMTools SNP 287268 287268 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold63 SAMTools SNP 322688 322688 4.75 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold63 SAMTools SNP 322762 322762 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold63 SAMTools SNP 323565 323565 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold63 SAMTools SNP 325146 325146 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold63 SAMTools SNP 343761 343761 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C51%2C0:99 scaffold63 SAMTools SNP 343925 343925 22.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C7.1e-09%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C20:23 scaffold63 SAMTools SNP 344375 344375 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C108%2C0:99 scaffold63 SAMTools SNP 350382 350382 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold63 SAMTools SNP 350851 350851 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold63 SAMTools SNP 350964 350964 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 351298 351298 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 353557 353557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold63 SAMTools SNP 353913 353913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold63 SAMTools SNP 353981 353981 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold63 SAMTools SNP 354453 354453 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold63 SAMTools SNP 354459 354459 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold63 SAMTools SNP 354504 354504 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C63%2C0:99 scaffold63 SAMTools SNP 355019 355019 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold63 SAMTools SNP 355438 355438 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold63 SAMTools SNP 355459 355459 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold63 SAMTools SNP 361850 361850 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C37%2C20%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.034%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 362522 362522 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C50%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold63 SAMTools SNP 362558 362558 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C56%2C6%2C5%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.36%2C0.0027%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold63 SAMTools SNP 364804 364804 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C41%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold63 SAMTools SNP 364811 364811 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C52%2C0%2C16%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00098%2C0.0016%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold63 SAMTools SNP 364814 364814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C67%2C67%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold63 SAMTools SNP 370444 370444 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D992%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D304%2C171%2C227%2C153%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 373017 373017 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D680%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D458%2C34%2C178%2C10%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.6%2C0.00046%2C1%2C8.3e-34;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold63 SAMTools SNP 375432 375432 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold63 SAMTools SNP 375454 375454 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold63 SAMTools SNP 375973 375973 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold63 SAMTools SNP 380959 380959 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 380965 380965 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 381341 381341 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold63 SAMTools SNP 381476 381476 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold63 SAMTools SNP 382677 382677 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold63 SAMTools SNP 396236 396236 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold63 SAMTools SNP 399391 399391 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D889%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D251%2C290%2C139%2C165%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.89%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold63 SAMTools SNP 399446 399446 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D731%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C315%2C358%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C2e-49%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold63 SAMTools SNP 399469 399469 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C32:35 scaffold63 SAMTools SNP 399490 399490 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11%3BPV4%3D0.25%2C0%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C38:41 scaffold63 SAMTools SNP 399571 399571 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D774%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C3e-06%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C35:38 scaffold63 SAMTools SNP 399592 399592 57.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D923%3BVDB%3D0.0394%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C14:17 scaffold63 SAMTools SNP 399661 399661 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2307%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C21%2C13%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D0.55%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C30%2C0:57 scaffold63 SAMTools SNP 399839 399839 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1264%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C77%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C241%2C0:99 scaffold63 SAMTools SNP 399904 399904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2450%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1669%2C529%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.4e-62%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold63 SAMTools SNP 400102 400102 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1594%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C40%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold63 SAMTools SNP 400513 400513 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1031%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D137%2C445%2C111%2C330%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 400773 400773 4.33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D14%2C17%2C1%2C11%3BMQ%3D19%3BFQ%3D-41%3BPV4%3D0.033%2C6.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C14%2C0:13 scaffold63 SAMTools SNP 400923 400923 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1166%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C494%2C137%2C347%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 401116 401116 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C60%2C0:99 scaffold63 SAMTools SNP 401121 401121 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C16%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C36%2C0:69 scaffold63 SAMTools SNP 406275 406275 8.44 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C17%2C11%2C38%2C0%2C35:8 scaffold63 SAMTools SNP 406346 406346 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold63 SAMTools SNP 406995 406995 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C58%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold63 SAMTools SNP 407012 407012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold63 SAMTools SNP 407088 407088 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C15%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.00064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold63 SAMTools SNP 408160 408160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 408196 408196 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 408523 408523 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 408532 408532 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 408535 408535 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 408857 408857 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C52:43 scaffold63 SAMTools SNP 409823 409823 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold63 SAMTools SNP 409829 409829 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C13%2C10%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.33%2C0.19%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold63 SAMTools SNP 412119 412119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C19%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold63 SAMTools SNP 413398 413398 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C45%2C91%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold63 SAMTools SNP 413866 413866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C76%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold63 SAMTools SNP 420398 420398 124 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D324%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C81%2C0%2C136%2C25%2C127:99 scaffold63 SAMTools SNP 420491 420491 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold63 SAMTools SNP 420845 420845 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold63 SAMTools SNP 421218 421218 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold63 SAMTools SNP 421393 421393 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C4%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.5e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold63 SAMTools SNP 421480 421480 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C2%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.59%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold63 SAMTools SNP 428380 428380 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold63 SAMTools SNP 428523 428523 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C261%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.6e-33%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C255%2C0:99 scaffold63 SAMTools SNP 429547 429547 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C268%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold63 SAMTools SNP 430090 430090 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 430096 430096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 431361 431361 56.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C5%2C0:9 scaffold63 SAMTools SNP 431379 431379 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D33%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C27%2C0:51 scaffold63 SAMTools SNP 432302 432302 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 432833 432833 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold63 SAMTools SNP 433561 433561 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold63 SAMTools SNP 434870 434870 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold63 SAMTools SNP 435594 435594 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold63 SAMTools SNP 435639 435639 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold63 SAMTools SNP 454976 454976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 14800 14800 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0051%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C222:54 scaffold630 SAMTools SNP 23274 23274 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold630 SAMTools SNP 27525 27525 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold630 SAMTools SNP 42448 42448 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold630 SAMTools SNP 42465 42465 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold630 SAMTools SNP 43350 43350 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold630 SAMTools SNP 43778 43778 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold630 SAMTools SNP 44329 44329 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C234:99 scaffold630 SAMTools SNP 45167 45167 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.6%2C8.6e-10%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold630 SAMTools SNP 45255 45255 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C225:31 scaffold630 SAMTools SNP 45710 45710 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C124:79 scaffold630 SAMTools SNP 46240 46240 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C27%2C0:51 scaffold630 SAMTools SNP 47571 47571 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C30%2C0:57 scaffold630 SAMTools SNP 47772 47772 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.44%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C155:99 scaffold630 SAMTools SNP 49621 49621 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold630 SAMTools SNP 51808 51808 12.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold630 SAMTools SNP 51961 51961 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.0055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C38:39 scaffold630 SAMTools SNP 65622 65622 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C32:35 scaffold630 SAMTools SNP 65631 65631 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.036%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold630 SAMTools SNP 65969 65969 224 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C20%2C11%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.15%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C6%2C0:10 scaffold630 SAMTools SNP 66004 66004 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold630 SAMTools SNP 66138 66138 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold630 SAMTools SNP 66154 66154 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold630 SAMTools SNP 66807 66807 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 68439 68439 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold630 SAMTools SNP 78001 78001 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C0%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D0.55%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold630 SAMTools SNP 78029 78029 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C1%2C33%2C1%3BMQ%3D46%3BFQ%3D-39%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C12%2C0:21 scaffold630 SAMTools SNP 81183 81183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold630 SAMTools SNP 81686 81686 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold630 SAMTools SNP 81725 81725 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold630 SAMTools SNP 89457 89457 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold630 SAMTools SNP 91325 91325 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold630 SAMTools SNP 92526 92526 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 96115 96115 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold630 SAMTools SNP 96350 96350 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 108852 108852 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 108858 108858 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 112340 112340 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 112821 112821 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 118952 118952 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold630 SAMTools SNP 120706 120706 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold630 SAMTools SNP 120722 120722 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.43%2C0.027%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C149:67 scaffold630 SAMTools SNP 120727 120727 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C135:46 scaffold630 SAMTools SNP 123907 123907 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 125772 125772 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.27%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C181:73 scaffold630 SAMTools SNP 126938 126938 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold630 SAMTools SNP 158329 158329 18.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold630 SAMTools SNP 159831 159831 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold630 SAMTools SNP 160455 160455 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold630 SAMTools SNP 160661 160661 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.33%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C23:26 scaffold630 SAMTools SNP 161429 161429 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold630 SAMTools SNP 161731 161731 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 191671 191671 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold630 SAMTools SNP 210511 210511 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold630 SAMTools SNP 218882 218882 6.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C18%2C0:20 scaffold630 SAMTools SNP 239935 239935 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 239990 239990 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 264315 264315 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold630 SAMTools SNP 264673 264673 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 264688 264688 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 333793 333793 6.02 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold630 SAMTools SNP 338507 338507 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold630 SAMTools SNP 338649 338649 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold630 SAMTools SNP 376174 376174 41.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold630 SAMTools SNP 376540 376540 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold630 SAMTools SNP 376543 376543 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold630 SAMTools SNP 378652 378652 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold630 SAMTools SNP 389916 389916 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D38%3BFQ%3D6.83%3BPV4%3D1%2C0.0025%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C39:34 scaffold630 SAMTools SNP 412757 412757 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D25.6%3BPV4%3D0.022%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C63:56 scaffold630 SAMTools SNP 413111 413111 40.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold630 SAMTools SNP 435344 435344 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C24%2C0%3BMQ%3D38%3BFQ%3D82%3BPV4%3D1%2C1%2C0.13%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C218:99 scaffold630 SAMTools SNP 435353 435353 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C0%2C94%2C0%3BMQ%3D35%3BFQ%3D126%3BPV4%3D1%2C0.07%2C0.35%2C2.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C217:99 scaffold630 SAMTools SNP 435407 435407 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1387%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D886%2C0%2C498%2C3%3BMQ%3D33%3BFQ%3D165%3BPV4%3D0.047%2C2.2e-31%2C0.0019%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C235:99 scaffold630 SAMTools SNP 436272 436272 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold630 SAMTools SNP 436630 436630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3561%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D881%2C643%2C870%2C1068%3BMQ%3D41%3BFQ%3D225%3BPV4%3D4.6e-14%2C0.036%2C1%2C6.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 437148 437148 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold630 SAMTools SNP 437600 437600 95 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D40%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C45%2C0%2C124%2C19%2C118:87 scaffold630 SAMTools SNP 437729 437729 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D964%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C937%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0021%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 438865 438865 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1417%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D192%2C534%2C123%2C379%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.47%2C1%2C0.015%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 442065 442065 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D547%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D318%2C0%2C225%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 446391 446391 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D552%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C530%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 448812 448812 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.55%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold630 SAMTools SNP 448818 448818 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C135:73 scaffold630 SAMTools SNP 450333 450333 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C61%2C11%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 450402 450402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 451348 451348 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C33%2C33%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 451387 451387 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 451699 451699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 451804 451804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold630 SAMTools SNP 452239 452239 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C38%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 453338 453338 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 454218 454218 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C120%2C10%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 454269 454269 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C153%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 455515 455515 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C36%2C13%2C15%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.2%2C2.6e-63%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold630 SAMTools SNP 456715 456715 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C12%2C4%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.65%2C6.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold630 SAMTools SNP 456770 456770 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C21%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C190%2C0:99 scaffold630 SAMTools SNP 457794 457794 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C16%2C0%3BMQ%3D47%3BFQ%3D13.2%3BPV4%3D0.0088%2C1.6e-11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold630 SAMTools SNP 461163 461163 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C130%2C73%2C27%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D3.9e-07%2C7.4e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold630 SAMTools SNP 461220 461220 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C234%2C23%2C113%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.78%2C1.5e-209%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold630 SAMTools SNP 462076 462076 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C36%2C13%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 462145 462145 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C13%2C21%2C4%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.39%2C1e-11%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold630 SAMTools SNP 462169 462169 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 462861 462861 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.37%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold630 SAMTools SNP 463291 463291 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.56%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold630 SAMTools SNP 463789 463789 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold630 SAMTools SNP 463797 463797 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold630 SAMTools SNP 463822 463822 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.39%2C1%2C3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 463837 463837 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold630 SAMTools SNP 464649 464649 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold630 SAMTools SNP 470305 470305 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold630 SAMTools SNP 470642 470642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold630 SAMTools SNP 470873 470873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C2%2C66%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 470966 470966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C40%2C15%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.4e-08%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 471443 471443 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C65%2C0%2C38%3BMQ%3D50%3BFQ%3D123%3BPV4%3D8e-07%2C1.1e-09%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold630 SAMTools SNP 471952 471952 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold630 SAMTools SNP 483801 483801 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold630 SAMTools SNP 483870 483870 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold630 SAMTools SNP 526195 526195 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D644%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D288%2C93%2C112%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C7e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 526258 526258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D912%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C682%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 526462 526462 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1006%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.43%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold630 SAMTools SNP 527188 527188 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D828%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D372%2C63%2C303%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 529238 529238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D503%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C332%2C120%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 531416 531416 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1308%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C57%2C0:99 scaffold630 SAMTools SNP 531934 531934 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1780%3BVDB%3D0.0367%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D0.1%2C2.7e-09%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C22:25 scaffold630 SAMTools SNP 532010 532010 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4289%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1168%2C798%2C1243%2C861%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold630 SAMTools SNP 533423 533423 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.33%2C9.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold630 SAMTools SNP 534038 534038 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C2%2C179%2C195%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.43%2C1.5e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold630 SAMTools SNP 534206 534206 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D493%3BVDB%3D0.0367%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.023%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C20:23 scaffold630 SAMTools SNP 534612 534612 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C44%2C129%2C63%3BMQ%3D50%3BFQ%3D48%3BPV4%3D4.5e-10%2C1.2e-120%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold630 SAMTools SNP 536760 536760 6.97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C7%2C153%2C159%3BMQ%3D1%3BFQ%3D-282%3BPV4%3D0.18%2C8.2e-158%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C255%2C0:51 scaffold630 SAMTools SNP 539550 539550 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D40%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold630 SAMTools SNP 540411 540411 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3728%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C921%2C1942%3BMQ%3D20%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold630 SAMTools SNP 540702 540702 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold630 SAMTools SNP 541346 541346 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C264%2C2%3BMQ%3D39%3BFQ%3D-282%3BPV4%3D0.0016%2C0.054%2C0.031%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold630 SAMTools SNP 542624 542624 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C21%2C36%2C4%3BMQ%3D24%3BFQ%3D69%3BPV4%3D0.00082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C96:99 scaffold630 SAMTools SNP 542862 542862 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold631 SAMTools SNP 22721 22721 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 22758 22758 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 34385 34385 179 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold631 SAMTools SNP 34407 34407 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold631 SAMTools SNP 34565 34565 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 34853 34853 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold631 SAMTools SNP 36589 36589 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 37074 37074 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold631 SAMTools SNP 37083 37083 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold631 SAMTools SNP 39021 39021 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold631 SAMTools SNP 41027 41027 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 42169 42169 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold631 SAMTools SNP 43381 43381 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold631 SAMTools SNP 43402 43402 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold631 SAMTools SNP 45857 45857 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 46046 46046 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 46052 46052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 46347 46347 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold631 SAMTools SNP 46399 46399 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C39%2C0:75 scaffold631 SAMTools SNP 46790 46790 4.75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold631 SAMTools SNP 96292 96292 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold631 SAMTools SNP 109650 109650 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold631 SAMTools SNP 114045 114045 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold631 SAMTools SNP 114096 114096 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold631 SAMTools SNP 114705 114705 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold631 SAMTools SNP 115225 115225 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold631 SAMTools SNP 115247 115247 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 115580 115580 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold631 SAMTools SNP 121028 121028 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 121034 121034 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 123319 123319 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.22%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold631 SAMTools SNP 124124 124124 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold631 SAMTools SNP 124286 124286 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold631 SAMTools SNP 124977 124977 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold631 SAMTools SNP 125019 125019 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 125041 125041 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 131491 131491 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold631 SAMTools SNP 134012 134012 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold631 SAMTools SNP 134631 134631 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 134902 134902 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold631 SAMTools SNP 135134 135134 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.53%2C0.17%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold631 SAMTools SNP 135209 135209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold631 SAMTools SNP 136149 136149 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold631 SAMTools SNP 137182 137182 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold631 SAMTools SNP 140322 140322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 141832 141832 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold631 SAMTools SNP 153890 153890 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold631 SAMTools SNP 154052 154052 8.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold631 SAMTools SNP 154340 154340 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold631 SAMTools SNP 154343 154343 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold631 SAMTools SNP 158986 158986 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C60:63 scaffold631 SAMTools SNP 160191 160191 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold631 SAMTools SNP 160354 160354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold631 SAMTools SNP 160670 160670 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold631 SAMTools SNP 162707 162707 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold631 SAMTools SNP 162708 162708 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold631 SAMTools SNP 164474 164474 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold631 SAMTools SNP 164872 164872 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold631 SAMTools SNP 164905 164905 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.15%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C112:51 scaffold631 SAMTools SNP 165011 165011 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 167453 167453 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold631 SAMTools SNP 175794 175794 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 176688 176688 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold631 SAMTools SNP 176713 176713 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 177176 177176 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.16%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold631 SAMTools SNP 177857 177857 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 178119 178119 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold631 SAMTools SNP 178134 178134 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold631 SAMTools SNP 178399 178399 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold631 SAMTools SNP 178675 178675 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 178951 178951 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold631 SAMTools SNP 182092 182092 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D30%3BFQ%3D40.8%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C74:71 scaffold631 SAMTools SNP 182135 182135 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D26.8%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C54:57 scaffold631 SAMTools SNP 191363 191363 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold631 SAMTools SNP 191383 191383 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold631 SAMTools SNP 192273 192273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold631 SAMTools SNP 194469 194469 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C4%2C7%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.39%2C0.0034%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold631 SAMTools SNP 196035 196035 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold631 SAMTools SNP 196055 196055 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold631 SAMTools SNP 196058 196058 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold631 SAMTools SNP 196067 196067 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D47%3BFQ%3D102%3BPV4%3D1%2C0.2%2C0.22%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C129:99 scaffold631 SAMTools SNP 196993 196993 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold631 SAMTools SNP 197289 197289 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold631 SAMTools SNP 206857 206857 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C117:47 scaffold631 SAMTools SNP 206992 206992 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C15%2C0:27 scaffold631 SAMTools SNP 208582 208582 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 209656 209656 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.26%2C7.9e-10%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold631 SAMTools SNP 211348 211348 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold631 SAMTools SNP 211411 211411 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold631 SAMTools SNP 211512 211512 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold631 SAMTools SNP 211517 211517 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold631 SAMTools SNP 211976 211976 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D70.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C98:99 scaffold631 SAMTools SNP 212649 212649 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C8%2C7%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.26%2C1.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold631 SAMTools SNP 220024 220024 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold631 SAMTools SNP 238354 238354 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold631 SAMTools SNP 238837 238837 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 239103 239103 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.086%2C0.002%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold631 SAMTools SNP 241127 241127 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold631 SAMTools SNP 241630 241630 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D41%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C201:60 scaffold631 SAMTools SNP 241651 241651 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D41%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C178:96 scaffold631 SAMTools SNP 241824 241824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C12%2C2%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 244584 244584 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 244608 244608 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.44%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold631 SAMTools SNP 245991 245991 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C43%2C0%2C25%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.53%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold631 SAMTools SNP 246908 246908 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 252461 252461 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold631 SAMTools SNP 254968 254968 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 255009 255009 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C15%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.4%2C7.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold631 SAMTools SNP 255026 255026 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 255201 255201 166 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C14%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.67%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold631 SAMTools SNP 257522 257522 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold631 SAMTools SNP 257549 257549 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C0%2C21%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.5%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold631 SAMTools SNP 260208 260208 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C280%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold631 SAMTools SNP 271190 271190 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.063%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C134:99 scaffold631 SAMTools SNP 271273 271273 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold631 SAMTools SNP 273078 273078 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold631 SAMTools SNP 273145 273145 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.51%2C0.046%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold631 SAMTools SNP 273839 273839 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold631 SAMTools SNP 273905 273905 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C30%2C0:57 scaffold631 SAMTools SNP 275665 275665 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C27%2C0:51 scaffold631 SAMTools SNP 276237 276237 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C30%2C24%3BMQ%3D48%3BFQ%3D54%3BPV4%3D0.019%2C1%2C0.19%2C4.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C81:84 scaffold631 SAMTools SNP 277636 277636 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold631 SAMTools SNP 279433 279433 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 289589 289589 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 293114 293114 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C2%2C60%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.5e-108%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold631 SAMTools SNP 293997 293997 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold631 SAMTools SNP 295134 295134 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C32%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C6.6e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C229:65 scaffold631 SAMTools SNP 300300 300300 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold631 SAMTools SNP 300336 300336 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.3%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold631 SAMTools SNP 300339 300339 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold631 SAMTools SNP 300372 300372 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C182:31 scaffold631 SAMTools SNP 303489 303489 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold631 SAMTools SNP 303728 303728 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C69%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold631 SAMTools SNP 307449 307449 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold631 SAMTools SNP 310137 310137 32.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold631 SAMTools SNP 310344 310344 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold631 SAMTools SNP 310614 310614 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C63:43 scaffold631 SAMTools SNP 310622 310622 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C87:43 scaffold631 SAMTools SNP 310627 310627 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C35:28 scaffold631 SAMTools SNP 311203 311203 25.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold631 SAMTools SNP 311347 311347 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold631 SAMTools SNP 311754 311754 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold631 SAMTools SNP 311876 311876 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold631 SAMTools SNP 311995 311995 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C134:67 scaffold631 SAMTools SNP 340349 340349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold631 SAMTools SNP 340683 340683 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C16%2C37%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C2.7e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 340742 340742 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold631 SAMTools SNP 343344 343344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold631 SAMTools SNP 343386 343386 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold631 SAMTools SNP 359230 359230 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C85:41 scaffold631 SAMTools SNP 359338 359338 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.32%2C4.9e-14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold631 SAMTools SNP 359386 359386 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C51%2C0:99 scaffold631 SAMTools SNP 368719 368719 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold631 SAMTools SNP 368831 368831 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold631 SAMTools SNP 369069 369069 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold631 SAMTools SNP 369078 369078 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold631 SAMTools SNP 382581 382581 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold631 SAMTools SNP 382645 382645 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D45%3BFQ%3D149%3BPV4%3D1%2C1%2C0.062%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C178:99 scaffold631 SAMTools SNP 382654 382654 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C213:82 scaffold632 SAMTools SNP 22401 22401 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 22427 22427 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold632 SAMTools SNP 24463 24463 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C19%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.13%2C1.8e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold632 SAMTools SNP 24538 24538 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C33%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold632 SAMTools SNP 24863 24863 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold632 SAMTools SNP 24913 24913 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold632 SAMTools SNP 24916 24916 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold632 SAMTools SNP 25410 25410 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C81:62 scaffold632 SAMTools SNP 26289 26289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.38%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 26319 26319 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.21%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 27203 27203 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 27548 27548 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C0.064%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 27563 27563 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold632 SAMTools SNP 27626 27626 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold632 SAMTools SNP 40808 40808 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 40838 40838 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 40864 40864 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 42889 42889 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D0.27%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold632 SAMTools SNP 42904 42904 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.31%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 45133 45133 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 45277 45277 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C10%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold632 SAMTools SNP 45715 45715 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold632 SAMTools SNP 46129 46129 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold632 SAMTools SNP 46259 46259 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold632 SAMTools SNP 46306 46306 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold632 SAMTools SNP 47928 47928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 48653 48653 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold632 SAMTools SNP 48670 48670 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold632 SAMTools SNP 48690 48690 9.52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold632 SAMTools SNP 48725 48725 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold632 SAMTools SNP 48854 48854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold632 SAMTools SNP 48877 48877 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold632 SAMTools SNP 48955 48955 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 50151 50151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C8%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 50183 50183 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 50228 50228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 50615 50615 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 50714 50714 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold632 SAMTools SNP 50990 50990 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold632 SAMTools SNP 50996 50996 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.58%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold632 SAMTools SNP 51038 51038 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.4%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold632 SAMTools SNP 51998 51998 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 52028 52028 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C216:99 scaffold632 SAMTools SNP 53301 53301 44.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold632 SAMTools SNP 53401 53401 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 54330 54330 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold632 SAMTools SNP 54548 54548 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold632 SAMTools SNP 54590 54590 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 54892 54892 186 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C47%2C29%2C209%2C0%2C206:33 scaffold632 SAMTools SNP 55429 55429 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold632 SAMTools SNP 57970 57970 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 57974 57974 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold632 SAMTools SNP 57994 57994 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold632 SAMTools SNP 58733 58733 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold632 SAMTools SNP 58751 58751 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 58799 58799 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 58835 58835 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 66242 66242 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold632 SAMTools SNP 66769 66769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold632 SAMTools SNP 69181 69181 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 70415 70415 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 70649 70649 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C7%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 71133 71133 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold632 SAMTools SNP 72183 72183 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C0%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold632 SAMTools SNP 72589 72589 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C66%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold632 SAMTools SNP 73616 73616 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold632 SAMTools SNP 73618 73618 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 74394 74394 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold632 SAMTools SNP 77453 77453 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 77466 77466 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold632 SAMTools SNP 78053 78053 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C45%2C0:86 scaffold632 SAMTools SNP 80100 80100 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 81568 81568 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 82767 82767 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.022%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold632 SAMTools SNP 83185 83185 160 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C26%2C5%2C181%2C0%2C178:39 scaffold632 SAMTools SNP 83739 83739 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.1%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold632 SAMTools SNP 84461 84461 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C17%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.017%2C1.8e-06%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold632 SAMTools SNP 84812 84812 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 84824 84824 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 85174 85174 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C2%2C25%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold632 SAMTools SNP 85184 85184 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C24%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold632 SAMTools SNP 85567 85567 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.072%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 85606 85606 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.38%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C201:99 scaffold632 SAMTools SNP 85624 85624 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold632 SAMTools SNP 85642 85642 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.26%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold632 SAMTools SNP 86124 86124 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.58%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold632 SAMTools SNP 86792 86792 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 86840 86840 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C9%2C1%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.00089%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold632 SAMTools SNP 87072 87072 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C11%2C6%2C9%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.00017%2C1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold632 SAMTools SNP 87297 87297 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.12%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold632 SAMTools SNP 87624 87624 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold632 SAMTools SNP 87783 87783 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C39%2C0:71 scaffold632 SAMTools SNP 87909 87909 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold632 SAMTools SNP 88374 88374 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 88375 88375 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 88411 88411 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 88826 88826 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold632 SAMTools SNP 88836 88836 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold632 SAMTools SNP 91493 91493 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C201:99 scaffold632 SAMTools SNP 98209 98209 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C36%2C0:69 scaffold632 SAMTools SNP 100933 100933 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C15%2C0:27 scaffold632 SAMTools SNP 103914 103914 168 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D44%3BFQ%3D71%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C98:99 scaffold632 SAMTools SNP 104749 104749 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold632 SAMTools SNP 104752 104752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold632 SAMTools SNP 107844 107844 46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C2.1e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C20:23 scaffold632 SAMTools SNP 107857 107857 34.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C21%2C0:39 scaffold632 SAMTools SNP 113155 113155 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C10%2C12%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.55%2C0.12%2C0.048%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 113414 113414 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold632 SAMTools SNP 113436 113436 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D42%3BFQ%3D50%3BPV4%3D0.43%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C107:80 scaffold632 SAMTools SNP 113988 113988 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold632 SAMTools SNP 113999 113999 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold632 SAMTools SNP 114009 114009 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold632 SAMTools SNP 117398 117398 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold632 SAMTools SNP 117417 117417 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold632 SAMTools SNP 120214 120214 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 120217 120217 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 120487 120487 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C29:32 scaffold632 SAMTools SNP 123178 123178 31 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C10%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.027%2C4.7e-23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold632 SAMTools SNP 123293 123293 19 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C41%2C32%2C52%2C0%2C46:15 scaffold632 SAMTools SNP 123319 123319 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C11%3BMQ%3D48%3BFQ%3D-60%3BPV4%3D1%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold632 SAMTools SNP 123383 123383 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C7%2C17%3BMQ%3D43%3BFQ%3D199%3BPV4%3D0.53%2C1%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C242:99 scaffold632 SAMTools SNP 129936 129936 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C14%3BMQ%3D43%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold632 SAMTools SNP 130001 130001 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C11%3BMQ%3D45%3BFQ%3D20.1%3BPV4%3D1%2C3.4e-08%2C0.26%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C205:50 scaffold632 SAMTools SNP 130313 130313 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C39%2C0:75 scaffold632 SAMTools SNP 176694 176694 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 176895 176895 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 179548 179548 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C4%2C0%3BMQ%3D33%3BFQ%3D30%3BPV4%3D0.024%2C1.7e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C161:60 scaffold632 SAMTools SNP 179639 179639 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.055%2C0.0019%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold632 SAMTools SNP 184045 184045 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold632 SAMTools SNP 184092 184092 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 184555 184555 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.56%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold632 SAMTools SNP 184977 184977 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold632 SAMTools SNP 184998 184998 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.39%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold632 SAMTools SNP 189365 189365 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C34%2C23%2C25%3BMQ%3D24%3BFQ%3D37%3BPV4%3D1%2C0.41%2C0.00011%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C212:67 scaffold632 SAMTools SNP 189390 189390 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C40%2C22%2C33%3BMQ%3D25%3BFQ%3D44%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C71:74 scaffold632 SAMTools SNP 189438 189438 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C40%2C0%2C33%3BMQ%3D27%3BFQ%3D5.47%3BPV4%3D0.0051%2C0.017%2C0.39%2C1.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold632 SAMTools SNP 189582 189582 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D18.7%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C46:49 scaffold632 SAMTools SNP 189806 189806 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C2%2C71%2C21%3BMQ%3D50%3BFQ%3D121%3BPV4%3D7.5e-06%2C9.7e-142%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold632 SAMTools SNP 190225 190225 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C218%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 190432 190432 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C63%2C0:99 scaffold632 SAMTools SNP 190517 190517 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D3.4e-07%2C8.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold632 SAMTools SNP 190531 190531 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C24%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D7.8e-07%2C7e-18%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold632 SAMTools SNP 190765 190765 64.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C15%2C0:27 scaffold632 SAMTools SNP 190774 190774 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold632 SAMTools SNP 190852 190852 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C93%2C0:99 scaffold632 SAMTools SNP 190955 190955 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C8%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.23%2C7.1e-10%2C1%2C0.00073;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold632 SAMTools SNP 191042 191042 21.8 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C11%2C5%2C52%2C0%2C49:10 scaffold632 SAMTools SNP 196294 196294 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C67%2C2%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 196299 196299 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C89%2C4%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 196587 196587 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.17%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold632 SAMTools SNP 196631 196631 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold632 SAMTools SNP 196648 196648 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold632 SAMTools SNP 196661 196661 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold632 SAMTools SNP 198306 198306 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold632 SAMTools SNP 198344 198344 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C21%2C0:39 scaffold632 SAMTools SNP 198383 198383 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C36%2C0:69 scaffold632 SAMTools SNP 198503 198503 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold632 SAMTools SNP 198720 198720 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold632 SAMTools SNP 199562 199562 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 199815 199815 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold632 SAMTools SNP 200171 200171 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 201676 201676 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold632 SAMTools SNP 224839 224839 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 224866 224866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.0042%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 224999 224999 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C7%2C18%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1.1e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold632 SAMTools SNP 226321 226321 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C45%2C0:87 scaffold632 SAMTools SNP 226591 226591 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold632 SAMTools SNP 227296 227296 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C39%2C0:75 scaffold632 SAMTools SNP 227368 227368 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C254:99 scaffold632 SAMTools SNP 228723 228723 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.015%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C244:59 scaffold632 SAMTools SNP 258342 258342 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 270829 270829 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D47%3BFQ%3D-7.78%3BPV4%3D1%2C0.0096%2C0.38%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C20:23 scaffold632 SAMTools SNP 275498 275498 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold632 SAMTools SNP 275872 275872 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold632 SAMTools SNP 276489 276489 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold632 SAMTools SNP 277828 277828 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C21%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 278099 278099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 278745 278745 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 284128 284128 26.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold632 SAMTools SNP 285115 285115 176 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C30%2C0:57 scaffold632 SAMTools SNP 286019 286019 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C34%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C120%2C0:99 scaffold632 SAMTools SNP 287440 287440 13.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold632 SAMTools SNP 287491 287491 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold632 SAMTools SNP 288010 288010 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold632 SAMTools SNP 288016 288016 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.55%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold632 SAMTools SNP 288043 288043 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold632 SAMTools SNP 288091 288091 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold632 SAMTools SNP 288109 288109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold632 SAMTools SNP 288532 288532 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 289397 289397 71.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C21%2C0:39 scaffold632 SAMTools SNP 289406 289406 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold632 SAMTools SNP 289859 289859 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C177:99 scaffold632 SAMTools SNP 289868 289868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold632 SAMTools SNP 291623 291623 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0039%2C0.00041%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold632 SAMTools SNP 291824 291824 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.48%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold632 SAMTools SNP 292138 292138 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.45%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold632 SAMTools SNP 292210 292210 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C144:36 scaffold632 SAMTools SNP 292222 292222 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.37%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C201:99 scaffold632 SAMTools SNP 292228 292228 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold632 SAMTools SNP 292778 292778 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.42%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C224:99 scaffold632 SAMTools SNP 292818 292818 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold632 SAMTools SNP 293291 293291 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 293294 293294 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 293348 293348 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 293366 293366 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D49%3BFQ%3D103%3BPV4%3D1%2C0.076%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C226:99 scaffold632 SAMTools SNP 295147 295147 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C0%3BMQ%3D49%3BFQ%3D200%3BPV4%3D1%2C1%2C0.17%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C230:99 scaffold632 SAMTools SNP 295177 295177 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C14%2C0%3BMQ%3D49%3BFQ%3D184%3BPV4%3D0.28%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold632 SAMTools SNP 295210 295210 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold632 SAMTools SNP 295237 295237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C43%2C32%3BMQ%3D50%3BFQ%3D-206%3BPV4%3D0.43%2C0.46%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C179%2C0:99 scaffold632 SAMTools SNP 295557 295557 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 295593 295593 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C189:99 scaffold632 SAMTools SNP 295908 295908 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C247:99 scaffold632 SAMTools SNP 295914 295914 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C239:99 scaffold632 SAMTools SNP 295935 295935 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold632 SAMTools SNP 295941 295941 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 295989 295989 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 296513 296513 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C228:73 scaffold632 SAMTools SNP 296931 296931 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D43%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold632 SAMTools SNP 296982 296982 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold632 SAMTools SNP 297003 297003 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold632 SAMTools SNP 297006 297006 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold632 SAMTools SNP 297136 297136 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold632 SAMTools SNP 297640 297640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C21%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 299535 299535 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C25%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold632 SAMTools SNP 299559 299559 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.2%2C1%2C6.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 299971 299971 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.6e-05%2C0.25%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 300542 300542 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 300849 300849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold632 SAMTools SNP 300855 300855 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold632 SAMTools SNP 300924 300924 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 302577 302577 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold632 SAMTools SNP 304506 304506 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D35.5%3BPV4%3D1%2C4.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C63:65 scaffold632 SAMTools SNP 304743 304743 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C9.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C185:54 scaffold632 SAMTools SNP 305037 305037 25 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold632 SAMTools SNP 305918 305918 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold632 SAMTools SNP 305930 305930 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold632 SAMTools SNP 305951 305951 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold632 SAMTools SNP 306337 306337 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 321394 321394 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 321451 321451 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.027%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold632 SAMTools SNP 326487 326487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 326517 326517 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C40%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.45%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 327063 327063 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 327394 327394 32.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold632 SAMTools SNP 332640 332640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C40%2C94%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 332742 332742 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C101%2C6%2C55%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 332989 332989 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C5%2C14%3BMQ%3D42%3BFQ%3D188%3BPV4%3D0.75%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold632 SAMTools SNP 334894 334894 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C25%2C94%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D2.8e-06%2C1.9e-18%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold632 SAMTools SNP 336340 336340 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold632 SAMTools SNP 337583 337583 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold632 SAMTools SNP 341790 341790 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold632 SAMTools SNP 341799 341799 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold632 SAMTools SNP 347316 347316 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 370298 370298 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 370345 370345 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold632 SAMTools SNP 376818 376818 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 377088 377088 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold632 SAMTools SNP 377143 377143 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 377843 377843 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 385656 385656 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 385686 385686 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 386300 386300 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 392588 392588 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 392601 392601 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 392625 392625 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 393931 393931 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 393949 393949 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 394754 394754 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 398094 398094 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 398272 398272 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 415680 415680 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 415685 415685 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold632 SAMTools SNP 417076 417076 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C11%2C27%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 419130 419130 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C68%2C1%2C30%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.31%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold632 SAMTools SNP 419133 419133 219 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C70%2C1%2C31%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.31%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold632 SAMTools SNP 419846 419846 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold632 SAMTools SNP 419880 419880 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0057%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C230:31 scaffold632 SAMTools SNP 420159 420159 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C254:99 scaffold632 SAMTools SNP 420473 420473 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold632 SAMTools SNP 420478 420478 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.0087%2C1%2C1%2C0.00055;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold632 SAMTools SNP 421028 421028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 421223 421223 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 421296 421296 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold632 SAMTools SNP 421631 421631 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.13%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 422113 422113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold632 SAMTools SNP 427187 427187 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C3%3BMQ%3D49%3BFQ%3D104%3BPV4%3D1%2C1%2C0.054%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold632 SAMTools SNP 427196 427196 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C2%2C6%3BMQ%3D49%3BFQ%3D171%3BPV4%3D1%2C0.12%2C0.088%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold632 SAMTools SNP 427943 427943 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold632 SAMTools SNP 429892 429892 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold632 SAMTools SNP 429910 429910 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold632 SAMTools SNP 429913 429913 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold632 SAMTools SNP 430315 430315 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.083%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C205:39 scaffold632 SAMTools SNP 430366 430366 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.45%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold632 SAMTools SNP 432262 432262 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold632 SAMTools SNP 432477 432477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold632 SAMTools SNP 432509 432509 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold632 SAMTools SNP 494880 494880 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold632 SAMTools SNP 495275 495275 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold632 SAMTools SNP 521620 521620 139 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C235:99 scaffold632 SAMTools SNP 521645 521645 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.077%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C197:99 scaffold632 SAMTools SNP 521651 521651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold632 SAMTools SNP 522683 522683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold632 SAMTools SNP 523137 523137 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 523218 523218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 523273 523273 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold632 SAMTools SNP 523301 523301 8.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold632 SAMTools SNP 523925 523925 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 523939 523939 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 527615 527615 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C36%2C0:69 scaffold632 SAMTools SNP 527799 527799 52.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold632 SAMTools SNP 527959 527959 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C18%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C4e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold632 SAMTools SNP 528291 528291 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C194%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 528390 528390 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C185%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold632 SAMTools SNP 531131 531131 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C62%2C19%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 531818 531818 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C31%2C0%2C20%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold632 SAMTools SNP 531894 531894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold632 SAMTools SNP 531912 531912 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold632 SAMTools SNP 534623 534623 5.29 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C21%2C15%2C34%2C0%2C31:6 scaffold632 SAMTools SNP 540613 540613 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold632 SAMTools SNP 540631 540631 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold632 SAMTools SNP 541185 541185 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C127:30 scaffold632 SAMTools SNP 541668 541668 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold632 SAMTools SNP 541762 541762 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C184:72 scaffold632 SAMTools SNP 542158 542158 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold632 SAMTools SNP 542216 542216 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold632 SAMTools SNP 546658 546658 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold632 SAMTools SNP 546694 546694 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold632 SAMTools SNP 546707 546707 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C22%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.23%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C47:50 scaffold632 SAMTools SNP 547036 547036 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold632 SAMTools SNP 547328 547328 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold632 SAMTools SNP 547861 547861 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.048%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold632 SAMTools SNP 548345 548345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold632 SAMTools SNP 548372 548372 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold632 SAMTools SNP 548396 548396 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold632 SAMTools SNP 548423 548423 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold632 SAMTools SNP 548742 548742 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold632 SAMTools SNP 550055 550055 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold632 SAMTools SNP 551409 551409 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold632 SAMTools SNP 551442 551442 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold632 SAMTools SNP 553466 553466 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold632 SAMTools SNP 553546 553546 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.023%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold632 SAMTools SNP 553739 553739 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold633 SAMTools SNP 4614 4614 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold633 SAMTools SNP 5778 5778 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold633 SAMTools SNP 5842 5842 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold633 SAMTools SNP 6230 6230 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold633 SAMTools SNP 6241 6241 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold633 SAMTools SNP 8644 8644 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold633 SAMTools SNP 9335 9335 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold633 SAMTools SNP 9395 9395 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold633 SAMTools SNP 30509 30509 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold633 SAMTools SNP 30763 30763 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold633 SAMTools SNP 49663 49663 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold633 SAMTools SNP 55250 55250 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold633 SAMTools SNP 55277 55277 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold634 SAMTools SNP 753 753 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold634 SAMTools SNP 15269 15269 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold634 SAMTools SNP 19084 19084 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold634 SAMTools SNP 60229 60229 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold634 SAMTools SNP 63943 63943 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold634 SAMTools SNP 69197 69197 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold634 SAMTools SNP 70443 70443 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold635 SAMTools SNP 1372 1372 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold635 SAMTools SNP 5035 5035 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold635 SAMTools SNP 18561 18561 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold635 SAMTools SNP 18580 18580 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold635 SAMTools SNP 18621 18621 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold635 SAMTools SNP 18627 18627 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold635 SAMTools SNP 18683 18683 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold635 SAMTools SNP 21393 21393 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold635 SAMTools SNP 27580 27580 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold635 SAMTools SNP 31605 31605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C10%3BMQ%3D48%3BFQ%3D-8.63%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C19:22 scaffold635 SAMTools SNP 42174 42174 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold635 SAMTools SNP 42175 42175 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold635 SAMTools SNP 43113 43113 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold635 SAMTools SNP 45472 45472 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold635 SAMTools SNP 63783 63783 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold635 SAMTools SNP 65752 65752 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D7.43%3BPV4%3D1%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C35:37 scaffold635 SAMTools SNP 89934 89934 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold635 SAMTools SNP 101932 101932 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold635 SAMTools SNP 113212 113212 46.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold635 SAMTools SNP 114018 114018 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold635 SAMTools SNP 114445 114445 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold635 SAMTools SNP 124039 124039 55.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold635 SAMTools SNP 138892 138892 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold635 SAMTools SNP 185195 185195 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold635 SAMTools SNP 191118 191118 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0031%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C112:30 scaffold635 SAMTools SNP 191746 191746 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold635 SAMTools SNP 203001 203001 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold635 SAMTools SNP 204673 204673 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C0%2C7%2C6%3BMQ%3D30%3BFQ%3D-35%3BPV4%3D0.046%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C8%2C0:14 scaffold635 SAMTools SNP 211661 211661 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C240:99 scaffold635 SAMTools SNP 215320 215320 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C30%2C40%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.5e-06%2C0.0002%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold635 SAMTools SNP 215627 215627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C85%2C22%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.19%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold635 SAMTools SNP 215678 215678 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C60%2C29%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold635 SAMTools SNP 216012 216012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C75%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold635 SAMTools SNP 216135 216135 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C21%2C15%2C22%3BMQ%3D46%3BFQ%3D153%3BPV4%3D0.00014%2C1%2C5.5e-19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold635 SAMTools SNP 217273 217273 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C133%2C23%2C7%3BMQ%3D48%3BFQ%3D31%3BPV4%3D1.1e-07%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold635 SAMTools SNP 217418 217418 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D41%2C23%2C8%2C5%3BMQ%3D32%3BFQ%3D9.53%3BPV4%3D1%2C1%2C0.4%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold635 SAMTools SNP 218265 218265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D488%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D226%2C28%2C145%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.16%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold635 SAMTools SNP 218304 218304 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D561%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D253%2C33%2C264%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00088%2C3.7e-42%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold635 SAMTools SNP 218725 218725 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold636 SAMTools SNP 2866 2866 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold636 SAMTools SNP 2890 2890 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold636 SAMTools SNP 4609 4609 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold636 SAMTools SNP 7238 7238 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold636 SAMTools SNP 7274 7274 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold636 SAMTools SNP 18994 18994 58 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D45%3BFQ%3D56.3%3BPV4%3D1%2C0.11%2C0.25%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C85:86 scaffold636 SAMTools SNP 19473 19473 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold636 SAMTools SNP 19482 19482 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold636 SAMTools SNP 19520 19520 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold636 SAMTools SNP 19562 19562 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold636 SAMTools SNP 19937 19937 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold636 SAMTools SNP 21492 21492 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold636 SAMTools SNP 23444 23444 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold636 SAMTools SNP 28935 28935 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold636 SAMTools SNP 29349 29349 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D3.54%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C28:31 scaffold636 SAMTools SNP 33941 33941 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold636 SAMTools SNP 33944 33944 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold636 SAMTools SNP 34064 34064 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold636 SAMTools SNP 34121 34121 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold636 SAMTools SNP 39530 39530 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold636 SAMTools SNP 39584 39584 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold636 SAMTools SNP 39873 39873 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold64 SAMTools SNP 1101 1101 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold64 SAMTools SNP 1114 1114 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold64 SAMTools SNP 4578 4578 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C1%2C10%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.49%2C0.45%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold64 SAMTools SNP 5245 5245 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold64 SAMTools SNP 5590 5590 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold64 SAMTools SNP 5668 5668 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold64 SAMTools SNP 5734 5734 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold64 SAMTools SNP 5761 5761 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold64 SAMTools SNP 5927 5927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0014%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold64 SAMTools SNP 6137 6137 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 6140 6140 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 6179 6179 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 6596 6596 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 6622 6622 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold64 SAMTools SNP 7813 7813 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold64 SAMTools SNP 7846 7846 78.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold64 SAMTools SNP 7858 7858 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold64 SAMTools SNP 7894 7894 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold64 SAMTools SNP 8567 8567 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold64 SAMTools SNP 8720 8720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C22%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.44%2C0.25%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold64 SAMTools SNP 10175 10175 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C8.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C20:23 scaffold64 SAMTools SNP 10972 10972 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold64 SAMTools SNP 30266 30266 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold64 SAMTools SNP 30656 30656 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 30678 30678 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.26%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold64 SAMTools SNP 30763 30763 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C7%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold64 SAMTools SNP 31113 31113 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C13%2C30%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold64 SAMTools SNP 31786 31786 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C50%2C3%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0032%2C1%2C1%2C6.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold64 SAMTools SNP 33654 33654 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold64 SAMTools SNP 33708 33708 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C87%2C0:99 scaffold64 SAMTools SNP 34148 34148 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C24%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 34187 34187 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.27%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold64 SAMTools SNP 34327 34327 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C3.2e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 34876 34876 42.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold64 SAMTools SNP 37523 37523 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C68%2C20%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.2%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 37556 37556 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 37583 37583 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C14%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold64 SAMTools SNP 37685 37685 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C2%2C3%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.6%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold64 SAMTools SNP 37692 37692 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.07%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 37713 37713 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 38002 38002 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.22%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold64 SAMTools SNP 38035 38035 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.68%2C0.00015%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold64 SAMTools SNP 38056 38056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold64 SAMTools SNP 38098 38098 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold64 SAMTools SNP 38493 38493 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C17%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.4%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold64 SAMTools SNP 38531 38531 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C58%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold64 SAMTools SNP 38745 38745 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C1%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold64 SAMTools SNP 38941 38941 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold64 SAMTools SNP 38977 38977 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.031%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold64 SAMTools SNP 38992 38992 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold64 SAMTools SNP 49055 49055 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold64 SAMTools SNP 49086 49086 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold64 SAMTools SNP 49113 49113 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold64 SAMTools SNP 49152 49152 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold64 SAMTools SNP 49155 49155 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold64 SAMTools SNP 49526 49526 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold64 SAMTools SNP 49528 49528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold64 SAMTools SNP 53055 53055 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold64 SAMTools SNP 53109 53109 161 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold64 SAMTools SNP 53141 53141 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C124:99 scaffold64 SAMTools SNP 53552 53552 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.048%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C202:99 scaffold64 SAMTools SNP 55215 55215 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold64 SAMTools SNP 58077 58077 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold64 SAMTools SNP 58152 58152 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold64 SAMTools SNP 60173 60173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold64 SAMTools SNP 60311 60311 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold64 SAMTools SNP 60332 60332 60.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold64 SAMTools SNP 114178 114178 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold64 SAMTools SNP 126005 126005 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold64 SAMTools SNP 126019 126019 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold64 SAMTools SNP 128381 128381 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C6%2C0%3BMQ%3D49%3BFQ%3D18.1%3BPV4%3D0.57%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold64 SAMTools SNP 132303 132303 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold64 SAMTools SNP 133287 133287 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.3%3BPV4%3D1%2C1.5e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C35:38 scaffold640 SAMTools SNP 1943 1943 51.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold640 SAMTools SNP 1945 1945 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C27:31 scaffold640 SAMTools SNP 24558 24558 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 25023 25023 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 25900 25900 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 31279 31279 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold640 SAMTools SNP 31342 31342 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold640 SAMTools SNP 31375 31375 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold640 SAMTools SNP 32317 32317 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold640 SAMTools SNP 35917 35917 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold640 SAMTools SNP 35929 35929 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold640 SAMTools SNP 36191 36191 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold640 SAMTools SNP 36215 36215 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold640 SAMTools SNP 36609 36609 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold640 SAMTools SNP 38337 38337 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C16%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold640 SAMTools SNP 38370 38370 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 39789 39789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 40671 40671 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C61%2C94%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-12%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 40720 40720 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C12%2C43%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.12%2C1%2C2.6e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 40753 40753 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C59%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 41075 41075 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C101%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-12%2C6.3e-09%2C1%2C6.7e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 41102 41102 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C1%2C87%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold640 SAMTools SNP 41541 41541 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C13%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.29%2C1%2C1.4e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C235:99 scaffold640 SAMTools SNP 41542 41542 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C40%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C104:99 scaffold640 SAMTools SNP 41565 41565 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold640 SAMTools SNP 44601 44601 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold640 SAMTools SNP 45205 45205 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C12%2C0:21 scaffold640 SAMTools SNP 64635 64635 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold640 SAMTools SNP 65245 65245 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C2%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold640 SAMTools SNP 65992 65992 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C9%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 66034 66034 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 66773 66773 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C36%2C22%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.011%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 66775 66775 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C36%2C20%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 68025 68025 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C30%2C0:57 scaffold640 SAMTools SNP 91979 91979 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C2.7e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C185:50 scaffold640 SAMTools SNP 92237 92237 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.038%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C28%2C0:53 scaffold640 SAMTools SNP 92240 92240 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.038%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C28%2C0:53 scaffold640 SAMTools SNP 92975 92975 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold640 SAMTools SNP 92981 92981 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C38%2C40%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C3.9e-47%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 93995 93995 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C84%2C0:99 scaffold640 SAMTools SNP 94844 94844 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold640 SAMTools SNP 94862 94862 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold640 SAMTools SNP 95290 95290 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold640 SAMTools SNP 95296 95296 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold640 SAMTools SNP 95419 95419 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold640 SAMTools SNP 96606 96606 210 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C25%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C28%2C0:53 scaffold640 SAMTools SNP 96639 96639 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 96645 96645 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 96706 96706 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C167:99 scaffold640 SAMTools SNP 96707 96707 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C224:68 scaffold640 SAMTools SNP 96723 96723 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C228:99 scaffold640 SAMTools SNP 96744 96744 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C163:99 scaffold640 SAMTools SNP 97032 97032 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold640 SAMTools SNP 97059 97059 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C13%2C4%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D5.8e-05%2C3.3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold640 SAMTools SNP 97176 97176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C55%3BMQ%3D50%3BFQ%3D-209%3BPV4%3D0.29%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold640 SAMTools SNP 97652 97652 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C67%2C21%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-07%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 97654 97654 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 97709 97709 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold640 SAMTools SNP 97721 97721 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C2%2C10%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.052%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C225:99 scaffold640 SAMTools SNP 97724 97724 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold640 SAMTools SNP 97733 97733 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C39%2C2%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C239:99 scaffold640 SAMTools SNP 98203 98203 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold640 SAMTools SNP 98619 98619 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold640 SAMTools SNP 98622 98622 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.018%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold640 SAMTools SNP 98739 98739 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold640 SAMTools SNP 99135 99135 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 99354 99354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold640 SAMTools SNP 99964 99964 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C63%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 99991 99991 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.26%2C0.0077%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold640 SAMTools SNP 100069 100069 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C0%2C63%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0013%2C4.9e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold640 SAMTools SNP 100715 100715 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C65%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold640 SAMTools SNP 101241 101241 58.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0%2C81%2C0%2C78:33 scaffold640 SAMTools SNP 101247 101247 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold640 SAMTools SNP 101289 101289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C9%2C7%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00025%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold640 SAMTools SNP 101634 101634 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C29%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 101640 101640 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold640 SAMTools SNP 101814 101814 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C31%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.00029%2C1.8e-34%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold640 SAMTools SNP 101823 101823 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C1%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.065%2C0.36%2C1%2C8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold640 SAMTools SNP 101847 101847 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold640 SAMTools SNP 101889 101889 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C26%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold640 SAMTools SNP 102196 102196 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C55%2C0%2C26%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold640 SAMTools SNP 102211 102211 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C46%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold640 SAMTools SNP 102247 102247 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold640 SAMTools SNP 102298 102298 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 102337 102337 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold640 SAMTools SNP 102352 102352 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold640 SAMTools SNP 103720 103720 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold640 SAMTools SNP 103735 103735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold640 SAMTools SNP 103741 103741 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold640 SAMTools SNP 104201 104201 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C169:74 scaffold640 SAMTools SNP 105386 105386 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold640 SAMTools SNP 105471 105471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 106442 106442 78.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C12%2C0:21 scaffold640 SAMTools SNP 116337 116337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C114%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 117003 117003 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C0%2C176%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1.9e-50%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold640 SAMTools SNP 117012 117012 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C1%2C0%2C176%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1.9e-50%2C1%2C1%2C1.3e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C114:99 scaffold640 SAMTools SNP 117045 117045 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C3%2C38%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D9.4e-05%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C9:12 scaffold640 SAMTools SNP 117090 117090 20.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold640 SAMTools SNP 117108 117108 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C0%3BMQ%3D41%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 118841 118841 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C123%2C0:99 scaffold640 SAMTools SNP 119693 119693 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold640 SAMTools SNP 121262 121262 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C42%2C0:81 scaffold640 SAMTools SNP 124004 124004 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 127560 127560 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C19%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0008%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C139:99 scaffold640 SAMTools SNP 128399 128399 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C0%2C4%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold640 SAMTools SNP 128471 128471 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C23%2C7%3BMQ%3D48%3BFQ%3D189%3BPV4%3D1.6e-07%2C1.4e-05%2C0.47%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold640 SAMTools SNP 128492 128492 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold640 SAMTools SNP 128802 128802 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold640 SAMTools SNP 128809 128809 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C2%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 128874 128874 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.057%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold640 SAMTools SNP 129126 129126 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C0%2C7%3BMQ%3D46%3BFQ%3D11.3%3BPV4%3D8.4e-07%2C1%2C1.3e-05%2C3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C236:40 scaffold640 SAMTools SNP 129147 129147 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold640 SAMTools SNP 129196 129196 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C58%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-15%2C1%2C1%2C5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold640 SAMTools SNP 129216 129216 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 129678 129678 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C105%2C7%2C14%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold640 SAMTools SNP 129711 129711 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D373%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C268%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 129728 129728 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold640 SAMTools SNP 129827 129827 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C12%2C7%2C283%3BMQ%3D50%3BFQ%3D-216%3BPV4%3D2.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C189%2C0:99 scaffold640 SAMTools SNP 129964 129964 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C11%2C5%2C327%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.025%2C0.27%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold640 SAMTools SNP 130000 130000 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C50%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold640 SAMTools SNP 130605 130605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D36%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold640 SAMTools SNP 130883 130883 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold640 SAMTools SNP 130892 130892 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold640 SAMTools SNP 130922 130922 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold640 SAMTools SNP 131335 131335 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold640 SAMTools SNP 132501 132501 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D144%2C2%2C0%2C32%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D2.8e-33%2C1e-10%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold640 SAMTools SNP 132507 132507 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D144%2C2%2C2%2C32%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1e-30%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold640 SAMTools SNP 140891 140891 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold640 SAMTools SNP 141079 141079 9.49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold640 SAMTools SNP 149347 149347 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold640 SAMTools SNP 173412 173412 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 173723 173723 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 185943 185943 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C66%2C0:95 scaffold640 SAMTools SNP 186301 186301 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold640 SAMTools SNP 186402 186402 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold640 SAMTools SNP 186703 186703 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold640 SAMTools SNP 186894 186894 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold644 SAMTools SNP 7522 7522 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold644 SAMTools SNP 7552 7552 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C41:44 scaffold644 SAMTools SNP 7759 7759 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold644 SAMTools SNP 8568 8568 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold644 SAMTools SNP 8609 8609 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold644 SAMTools SNP 46360 46360 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold644 SAMTools SNP 54453 54453 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold644 SAMTools SNP 54579 54579 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold645 SAMTools SNP 63171 63171 12.2 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold645 SAMTools SNP 63172 63172 12.2 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold647 SAMTools SNP 39081 39081 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold647 SAMTools SNP 39082 39082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold647 SAMTools SNP 39984 39984 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 41034 41034 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold647 SAMTools SNP 41766 41766 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold647 SAMTools SNP 41799 41799 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C4%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0093%2C8e-10%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold647 SAMTools SNP 42087 42087 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0048%2C3.7e-12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold647 SAMTools SNP 42177 42177 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C60%2C0:99 scaffold647 SAMTools SNP 42216 42216 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold647 SAMTools SNP 44744 44744 26.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.071%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold647 SAMTools SNP 45092 45092 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C30%2C10%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.00025%2C2.1e-12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold647 SAMTools SNP 45117 45117 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C26%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold647 SAMTools SNP 45141 45141 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold647 SAMTools SNP 45276 45276 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold647 SAMTools SNP 45355 45355 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold647 SAMTools SNP 45697 45697 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C26%3BMQ%3D50%3BFQ%3D-71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C44%2C0:85 scaffold647 SAMTools SNP 45701 45701 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold647 SAMTools SNP 45788 45788 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold647 SAMTools SNP 46393 46393 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C36%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold647 SAMTools SNP 46719 46719 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold647 SAMTools SNP 46731 46731 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C111%2C0%2C51%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold647 SAMTools SNP 46794 46794 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 46950 46950 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C224:99 scaffold647 SAMTools SNP 47506 47506 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold647 SAMTools SNP 48391 48391 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold647 SAMTools SNP 48718 48718 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C6%2C18%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.067%2C2.6e-22%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold647 SAMTools SNP 49330 49330 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D693%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C508%2C178%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C255%2C0:99 scaffold647 SAMTools SNP 50013 50013 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C60%2C0:99 scaffold647 SAMTools SNP 50117 50117 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold647 SAMTools SNP 50121 50121 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold647 SAMTools SNP 51463 51463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold647 SAMTools SNP 51511 51511 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.42%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C7%2C0:12 scaffold647 SAMTools SNP 51562 51562 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C83%2C29%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1.8e-27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C250:99 scaffold647 SAMTools SNP 51900 51900 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C0%2C82%3BMQ%3D50%3BFQ%3D183%3BPV4%3D5.3e-26%2C0.1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C210:99 scaffold647 SAMTools SNP 51925 51925 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold647 SAMTools SNP 52112 52112 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold647 SAMTools SNP 52133 52133 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold647 SAMTools SNP 52721 52721 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 52731 52731 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 53295 53295 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold647 SAMTools SNP 53673 53673 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold647 SAMTools SNP 53689 53689 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold647 SAMTools SNP 53754 53754 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold647 SAMTools SNP 54125 54125 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C16%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold647 SAMTools SNP 54342 54342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold647 SAMTools SNP 54509 54509 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C6%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold647 SAMTools SNP 55483 55483 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold647 SAMTools SNP 55730 55730 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold647 SAMTools SNP 55743 55743 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold647 SAMTools SNP 58083 58083 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C15%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold647 SAMTools SNP 58137 58137 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C18%2C121%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold647 SAMTools SNP 58161 58161 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C214%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold647 SAMTools SNP 58472 58472 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C79%2C15%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold647 SAMTools SNP 58506 58506 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C122%2C24%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.21%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold647 SAMTools SNP 59474 59474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold647 SAMTools SNP 59507 59507 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.48%2C1.9e-08%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C225:99 scaffold647 SAMTools SNP 60379 60379 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C28%2C12%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.038%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold647 SAMTools SNP 60408 60408 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C53%2C0%2C6%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold647 SAMTools SNP 60411 60411 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C53%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold647 SAMTools SNP 60424 60424 95 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold647 SAMTools SNP 60820 60820 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C238:99 scaffold647 SAMTools SNP 60838 60838 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 61293 61293 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 61332 61332 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 62289 62289 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold647 SAMTools SNP 62309 62309 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 63433 63433 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 63438 63438 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 95995 95995 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C113%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold647 SAMTools SNP 97542 97542 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 97554 97554 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold647 SAMTools SNP 97792 97792 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 98006 98006 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold647 SAMTools SNP 102629 102629 54.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold647 SAMTools SNP 102919 102919 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold647 SAMTools SNP 102964 102964 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold647 SAMTools SNP 103375 103375 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold647 SAMTools SNP 103588 103588 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C154:34 scaffold647 SAMTools SNP 103721 103721 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold647 SAMTools SNP 103820 103820 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold647 SAMTools SNP 104221 104221 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 104573 104573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold647 SAMTools SNP 104575 104575 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.29%2C4.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold647 SAMTools SNP 105343 105343 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C21%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C215:99 scaffold647 SAMTools SNP 105380 105380 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C224:99 scaffold647 SAMTools SNP 105383 105383 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold647 SAMTools SNP 124634 124634 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold647 SAMTools SNP 149008 149008 6.17 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold647 SAMTools SNP 161669 161669 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold647 SAMTools SNP 161965 161965 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold65 SAMTools SNP 3162 3162 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 3282 3282 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 63936 63936 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 63986 63986 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 64959 64959 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold65 SAMTools SNP 65001 65001 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 65109 65109 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold65 SAMTools SNP 65301 65301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold65 SAMTools SNP 65359 65359 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C6%2C73%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D7e-06%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold65 SAMTools SNP 68099 68099 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C6%2C88%2C4%3BMQ%3D50%3BFQ%3D-47%3BPV4%3D1.3e-06%2C0.39%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold65 SAMTools SNP 68161 68161 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 68923 68923 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold65 SAMTools SNP 69362 69362 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C9%2C3%3BMQ%3D43%3BFQ%3D-42%3BPV4%3D0.53%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C15%2C0:27 scaffold65 SAMTools SNP 69853 69853 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 69863 69863 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C1%3BMQ%3D47%3BFQ%3D78%3BPV4%3D0.44%2C1%2C0.15%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C156:99 scaffold65 SAMTools SNP 70100 70100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold65 SAMTools SNP 71632 71632 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C10%2C11%3BMQ%3D46%3BFQ%3D62%3BPV4%3D1%2C0.011%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold65 SAMTools SNP 71644 71644 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C3%3BMQ%3D43%3BFQ%3D90%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C117:99 scaffold65 SAMTools SNP 71703 71703 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold65 SAMTools SNP 71731 71731 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold65 SAMTools SNP 72566 72566 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C4%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.61%2C0.18%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold65 SAMTools SNP 72614 72614 186 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C54%2C0:99 scaffold65 SAMTools SNP 72647 72647 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold65 SAMTools SNP 72858 72858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold65 SAMTools SNP 72882 72882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C1%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold65 SAMTools SNP 74200 74200 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C7%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold65 SAMTools SNP 74221 74221 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C7%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold65 SAMTools SNP 74395 74395 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold65 SAMTools SNP 74523 74523 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C3.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold65 SAMTools SNP 74586 74586 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C8%2C19%3BMQ%3D50%3BFQ%3D112%3BPV4%3D5.8e-09%2C5.3e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold65 SAMTools SNP 74629 74629 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold65 SAMTools SNP 74731 74731 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C3%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold65 SAMTools SNP 75131 75131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold65 SAMTools SNP 75188 75188 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0005%2C1%2C1%2C0.00064;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold65 SAMTools SNP 75716 75716 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C8e-06%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold65 SAMTools SNP 75748 75748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C17%2C1%3BMQ%3D49%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold65 SAMTools SNP 76388 76388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C32%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 76457 76457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D44%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold65 SAMTools SNP 76460 76460 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C0%2C15%3BMQ%3D44%3BFQ%3D88%3BPV4%3D0.015%2C1%2C0.022%2C4.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold65 SAMTools SNP 76782 76782 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold65 SAMTools SNP 77155 77155 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold65 SAMTools SNP 77188 77188 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 77511 77511 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold65 SAMTools SNP 77529 77529 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold65 SAMTools SNP 77571 77571 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.37%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C148:99 scaffold65 SAMTools SNP 78357 78357 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.35%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold65 SAMTools SNP 78368 78368 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold65 SAMTools SNP 78894 78894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold65 SAMTools SNP 79255 79255 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold65 SAMTools SNP 79280 79280 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 79328 79328 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold65 SAMTools SNP 79360 79360 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold65 SAMTools SNP 79420 79420 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C31%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold65 SAMTools SNP 79775 79775 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C16%2C0%2C30%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold65 SAMTools SNP 79796 79796 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C27%2C11%3BMQ%3D50%3BFQ%3D191%3BPV4%3D8.4e-08%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold65 SAMTools SNP 79841 79841 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 80877 80877 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.003%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C244:99 scaffold65 SAMTools SNP 80893 80893 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold65 SAMTools SNP 80899 80899 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0047%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 81036 81036 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C9%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold65 SAMTools SNP 81050 81050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold65 SAMTools SNP 81051 81051 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold65 SAMTools SNP 81116 81116 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold65 SAMTools SNP 81139 81139 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold65 SAMTools SNP 81602 81602 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C15%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.0093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold65 SAMTools SNP 81642 81642 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold65 SAMTools SNP 81659 81659 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.25%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold65 SAMTools SNP 81908 81908 127 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold65 SAMTools SNP 81989 81989 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold65 SAMTools SNP 81992 81992 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 82567 82567 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C27:31 scaffold65 SAMTools SNP 82577 82577 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 84305 84305 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C204%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 84311 84311 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C2%2C32%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.5%2C2.1e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C245:99 scaffold65 SAMTools SNP 84876 84876 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold65 SAMTools SNP 84882 84882 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold65 SAMTools SNP 85554 85554 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold65 SAMTools SNP 86124 86124 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C39%2C0:75 scaffold65 SAMTools SNP 86163 86163 176 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D44%3BFQ%3D-21%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C6:9 scaffold65 SAMTools SNP 86175 86175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold65 SAMTools SNP 86784 86784 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold65 SAMTools SNP 86860 86860 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold65 SAMTools SNP 87332 87332 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold65 SAMTools SNP 87338 87338 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold65 SAMTools SNP 87868 87868 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C53%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold65 SAMTools SNP 88559 88559 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold65 SAMTools SNP 88568 88568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold65 SAMTools SNP 89548 89548 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C19%2C22%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.00088%2C1.2e-06%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold65 SAMTools SNP 89600 89600 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C67%2C14%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C8.5e-64%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold65 SAMTools SNP 89975 89975 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold65 SAMTools SNP 90813 90813 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C5%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold65 SAMTools SNP 90819 90819 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C5%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold65 SAMTools SNP 91464 91464 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 91476 91476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold65 SAMTools SNP 91578 91578 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C1%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.011%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold65 SAMTools SNP 93256 93256 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold65 SAMTools SNP 93279 93279 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 93393 93393 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 93396 93396 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold65 SAMTools SNP 93949 93949 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold65 SAMTools SNP 94003 94003 129 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold65 SAMTools SNP 94027 94027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C71%2C17%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.095%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold65 SAMTools SNP 94333 94333 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold65 SAMTools SNP 95305 95305 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D432%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D271%2C69%2C60%2C31%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold65 SAMTools SNP 95668 95668 76 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0%2C102%2C7%2C99:45 scaffold65 SAMTools SNP 96343 96343 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 96407 96407 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold65 SAMTools SNP 96953 96953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold65 SAMTools SNP 99484 99484 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 99600 99600 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold65 SAMTools SNP 99885 99885 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D42%3BFQ%3D50%3BPV4%3D1%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C107:80 scaffold65 SAMTools SNP 99900 99900 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D45%3BFQ%3D44%3BPV4%3D1%2C1%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C174:74 scaffold65 SAMTools SNP 99909 99909 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold65 SAMTools SNP 99963 99963 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold65 SAMTools SNP 100002 100002 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C12%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold65 SAMTools SNP 102821 102821 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D48%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold65 SAMTools SNP 102851 102851 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C12%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C245:99 scaffold65 SAMTools SNP 102872 102872 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C2%2C12%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.12%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold65 SAMTools SNP 103490 103490 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold65 SAMTools SNP 103514 103514 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold65 SAMTools SNP 103523 103523 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold65 SAMTools SNP 105853 105853 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold65 SAMTools SNP 105964 105964 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold65 SAMTools SNP 106000 106000 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold65 SAMTools SNP 107487 107487 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold65 SAMTools SNP 107504 107504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold65 SAMTools SNP 109460 109460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold65 SAMTools SNP 109529 109529 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold65 SAMTools SNP 109682 109682 98.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold65 SAMTools SNP 109715 109715 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold65 SAMTools SNP 109726 109726 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold65 SAMTools SNP 111076 111076 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold65 SAMTools SNP 111613 111613 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold65 SAMTools SNP 111640 111640 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold65 SAMTools SNP 113418 113418 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold65 SAMTools SNP 114335 114335 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold65 SAMTools SNP 114383 114383 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold654 SAMTools SNP 17965 17965 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold654 SAMTools SNP 17990 17990 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C1%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.4%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold654 SAMTools SNP 18001 18001 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C29%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold654 SAMTools SNP 24690 24690 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold654 SAMTools SNP 24723 24723 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold654 SAMTools SNP 25023 25023 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold654 SAMTools SNP 25153 25153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold654 SAMTools SNP 25168 25168 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold654 SAMTools SNP 25261 25261 22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold654 SAMTools SNP 25676 25676 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold654 SAMTools SNP 47855 47855 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold654 SAMTools SNP 86730 86730 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold654 SAMTools SNP 87248 87248 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold654 SAMTools SNP 87479 87479 70.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C15%2C0:27 scaffold654 SAMTools SNP 88602 88602 63.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C15%2C0:27 scaffold654 SAMTools SNP 93006 93006 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 1339 1339 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold655 SAMTools SNP 33082 33082 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold655 SAMTools SNP 33595 33595 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold655 SAMTools SNP 72986 72986 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold655 SAMTools SNP 73994 73994 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C57%2C0:99 scaffold655 SAMTools SNP 75514 75514 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold655 SAMTools SNP 75581 75581 37 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C0.0094%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C211:70 scaffold655 SAMTools SNP 75587 75587 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.49%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C215:82 scaffold655 SAMTools SNP 90175 90175 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 98812 98812 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0042%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 98873 98873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 148925 148925 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.013%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold655 SAMTools SNP 187835 187835 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 187845 187845 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 192381 192381 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 196577 196577 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 197308 197308 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.9%3BPV4%3D1%2C4.6e-06%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C77:80 scaffold655 SAMTools SNP 212852 212852 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D41%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C63%2C0:99 scaffold655 SAMTools SNP 213164 213164 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold655 SAMTools SNP 213442 213442 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold655 SAMTools SNP 225194 225194 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C54%2C0:99 scaffold655 SAMTools SNP 225381 225381 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C30%2C0:57 scaffold655 SAMTools SNP 228465 228465 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold655 SAMTools SNP 228524 228524 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold655 SAMTools SNP 229589 229589 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold655 SAMTools SNP 229712 229712 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C8%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.00022%2C1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C229:92 scaffold655 SAMTools SNP 229787 229787 65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C185:98 scaffold655 SAMTools SNP 229818 229818 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold655 SAMTools SNP 230233 230233 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C10%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-17%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 230261 230261 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C32%2C0%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold655 SAMTools SNP 230273 230273 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C25%2C2%2C8%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold655 SAMTools SNP 230287 230287 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 231855 231855 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold655 SAMTools SNP 231891 231891 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold655 SAMTools SNP 232281 232281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold655 SAMTools SNP 232799 232799 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold655 SAMTools SNP 232804 232804 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold655 SAMTools SNP 232873 232873 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 233218 233218 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold655 SAMTools SNP 233221 233221 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 233227 233227 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 233733 233733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold655 SAMTools SNP 233757 233757 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold655 SAMTools SNP 234244 234244 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold655 SAMTools SNP 234308 234308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold655 SAMTools SNP 234341 234341 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold655 SAMTools SNP 234364 234364 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold655 SAMTools SNP 235569 235569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 236031 236031 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 246447 246447 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 246477 246477 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C28%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold655 SAMTools SNP 246874 246874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C25%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 246915 246915 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C0%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold655 SAMTools SNP 247333 247333 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C18%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold655 SAMTools SNP 247348 247348 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold655 SAMTools SNP 247408 247408 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold655 SAMTools SNP 247423 247423 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold655 SAMTools SNP 247432 247432 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold655 SAMTools SNP 248421 248421 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.055%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold655 SAMTools SNP 248846 248846 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C12%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C102%2C0:99 scaffold655 SAMTools SNP 248864 248864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold655 SAMTools SNP 248903 248903 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold655 SAMTools SNP 248933 248933 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 251360 251360 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C36%2C0:69 scaffold655 SAMTools SNP 251442 251442 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C4.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C216:99 scaffold655 SAMTools SNP 254153 254153 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.061%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C204:99 scaffold655 SAMTools SNP 254159 254159 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D98.5%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C126:99 scaffold655 SAMTools SNP 254243 254243 215 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C112:99 scaffold655 SAMTools SNP 256763 256763 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold655 SAMTools SNP 258124 258124 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold655 SAMTools SNP 258162 258162 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold655 SAMTools SNP 266042 266042 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold655 SAMTools SNP 266288 266288 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold655 SAMTools SNP 267892 267892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C118%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-07%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 268006 268006 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C154%2C10%2C12%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold655 SAMTools SNP 268200 268200 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 274960 274960 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold655 SAMTools SNP 275411 275411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C13%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 275498 275498 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C16%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.043%2C0.0073%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold655 SAMTools SNP 275972 275972 45 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C30%2C21%2C74%2C0%2C71:16 scaffold655 SAMTools SNP 276241 276241 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold655 SAMTools SNP 276655 276655 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.35%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C76:79 scaffold655 SAMTools SNP 276718 276718 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C13%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C4.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C108:81 scaffold655 SAMTools SNP 276784 276784 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold655 SAMTools SNP 276900 276900 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold655 SAMTools SNP 276967 276967 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 277990 277990 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold655 SAMTools SNP 278378 278378 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold655 SAMTools SNP 278642 278642 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold655 SAMTools SNP 278759 278759 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold655 SAMTools SNP 278963 278963 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold655 SAMTools SNP 279041 279041 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold655 SAMTools SNP 279613 279613 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.17%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold655 SAMTools SNP 280673 280673 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold655 SAMTools SNP 280751 280751 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold655 SAMTools SNP 281323 281323 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.44%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold655 SAMTools SNP 281666 281666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold655 SAMTools SNP 282567 282567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 284258 284258 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold655 SAMTools SNP 284455 284455 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold655 SAMTools SNP 284476 284476 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold655 SAMTools SNP 284959 284959 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold655 SAMTools SNP 285950 285950 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.041%2C0.086%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold655 SAMTools SNP 286415 286415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C14%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold655 SAMTools SNP 286592 286592 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold655 SAMTools SNP 286617 286617 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.015%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C162:44 scaffold655 SAMTools SNP 289959 289959 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold655 SAMTools SNP 294102 294102 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C10%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.19%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 297781 297781 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold655 SAMTools SNP 297784 297784 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold655 SAMTools SNP 298330 298330 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C18%2C0:33 scaffold655 SAMTools SNP 298372 298372 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C7%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold655 SAMTools SNP 298402 298402 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 299052 299052 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold655 SAMTools SNP 299055 299055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold655 SAMTools SNP 299547 299547 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C15%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold655 SAMTools SNP 300060 300060 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold655 SAMTools SNP 300600 300600 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C49%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 301774 301774 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C28%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 301849 301849 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C21%2C35%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 302158 302158 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 302226 302226 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 302418 302418 66.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold655 SAMTools SNP 303761 303761 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold655 SAMTools SNP 303841 303841 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold655 SAMTools SNP 305537 305537 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 307146 307146 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C47%3BMQ%3D49%3BFQ%3D-201;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C25:99 scaffold655 SAMTools SNP 308052 308052 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C48%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold655 SAMTools SNP 308093 308093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold655 SAMTools SNP 308111 308111 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold655 SAMTools SNP 308586 308586 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.00033%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold655 SAMTools SNP 308593 308593 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C0.00066%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 309656 309656 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C20%2C95%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.012%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 310532 310532 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C16%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.027%2C0.35%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold655 SAMTools SNP 310682 310682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold655 SAMTools SNP 335155 335155 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C5.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C154:99 scaffold655 SAMTools SNP 335871 335871 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C16:19 scaffold655 SAMTools SNP 336145 336145 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold655 SAMTools SNP 336548 336548 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold655 SAMTools SNP 336797 336797 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.013%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 336824 336824 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 336827 336827 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 339448 339448 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.42%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C215:99 scaffold655 SAMTools SNP 340571 340571 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold655 SAMTools SNP 340623 340623 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold655 SAMTools SNP 341048 341048 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold655 SAMTools SNP 341496 341496 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold655 SAMTools SNP 341564 341564 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 342076 342076 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C0.21%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold655 SAMTools SNP 342384 342384 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C129:99 scaffold655 SAMTools SNP 343135 343135 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold655 SAMTools SNP 343600 343600 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold655 SAMTools SNP 350710 350710 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold655 SAMTools SNP 362057 362057 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C5%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 362121 362121 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C239:99 scaffold655 SAMTools SNP 362184 362184 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.5%2C0.092%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C204:99 scaffold655 SAMTools SNP 362693 362693 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold655 SAMTools SNP 363109 363109 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 363615 363615 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C31%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1.4e-09%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 363657 363657 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C21%2C0:39 scaffold655 SAMTools SNP 364579 364579 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C26%2C29%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.00054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 364603 364603 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 364892 364892 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C8%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 365211 365211 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C50%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 365266 365266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 365274 365274 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 365535 365535 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C40%2C57%2C8%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.00019%2C3.2e-108%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold655 SAMTools SNP 365577 365577 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C40%2C4%2C9%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold655 SAMTools SNP 365589 365589 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C107%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 366172 366172 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C18%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold655 SAMTools SNP 366241 366241 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C304%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 367646 367646 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C1%2C290%2C21%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 367938 367938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C23%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold655 SAMTools SNP 367956 367956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold655 SAMTools SNP 368076 368076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 368430 368430 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 368442 368442 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C24%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold655 SAMTools SNP 368494 368494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C20%3BMQ%3D50%3BFQ%3D-120%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold655 SAMTools SNP 368532 368532 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C15%2C55%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 368855 368855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 371734 371734 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C31%2C55%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 371751 371751 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C26%2C82%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C5.3e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 372277 372277 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold655 SAMTools SNP 372400 372400 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C44%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold655 SAMTools SNP 372692 372692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D439%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 373191 373191 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 373556 373556 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 373622 373622 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C26%2C49%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C5.1e-08%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 374392 374392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C123%2C195%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 374473 374473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 375070 375070 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C9%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold655 SAMTools SNP 375776 375776 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.24%2C7.1e-14%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold655 SAMTools SNP 376055 376055 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold655 SAMTools SNP 376591 376591 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.023%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold655 SAMTools SNP 376609 376609 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 376612 376612 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 376631 376631 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.016%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold655 SAMTools SNP 376828 376828 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.68%2C0.055%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold655 SAMTools SNP 376837 376837 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 377522 377522 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.6%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold655 SAMTools SNP 377546 377546 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold655 SAMTools SNP 377552 377552 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold655 SAMTools SNP 378166 378166 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold655 SAMTools SNP 378626 378626 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C4%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0032%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold655 SAMTools SNP 378971 378971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold655 SAMTools SNP 379052 379052 73 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.59%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold655 SAMTools SNP 379070 379070 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C51%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 379103 379103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C14%2C16%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 379473 379473 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C21%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C248:99 scaffold655 SAMTools SNP 379512 379512 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.079%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold655 SAMTools SNP 379548 379548 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C57%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.28%2C7.7e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold655 SAMTools SNP 379581 379581 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold655 SAMTools SNP 379584 379584 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold655 SAMTools SNP 380021 380021 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 380439 380439 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C111%2C3%2C25%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C8.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold655 SAMTools SNP 380463 380463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C49%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold655 SAMTools SNP 380511 380511 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C3%2C7%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-14%2C0.3%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 380520 380520 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C3%2C38%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.086%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 380539 380539 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C17%2C147%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 381369 381369 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C81%2C123%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1.2e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 381465 381465 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D305%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C157%2C32%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 381746 381746 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C31%2C109%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C2.3e-08%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 382320 382320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 383661 383661 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C18%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.00032%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold655 SAMTools SNP 383662 383662 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0063%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold655 SAMTools SNP 383672 383672 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C41%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold655 SAMTools SNP 383690 383690 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold655 SAMTools SNP 383807 383807 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C1%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold655 SAMTools SNP 384349 384349 83.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold655 SAMTools SNP 384445 384445 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C41%2C202%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.7e-28%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 384511 384511 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C4%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold655 SAMTools SNP 386375 386375 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D174%2C121%2C147%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.00039%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 386919 386919 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold655 SAMTools SNP 387342 387342 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 387372 387372 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 387591 387591 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C4%2C22%2C13%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C32:35 scaffold655 SAMTools SNP 388141 388141 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 388372 388372 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold655 SAMTools SNP 388996 388996 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C574%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 389382 389382 12 . . REF=N;ALT=A,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C23%2C17%2C42%2C0%2C39:9 scaffold655 SAMTools SNP 389987 389987 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C182%2C93%2C149%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C3.6e-105%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 390311 390311 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D314%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C194%2C9%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 390386 390386 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C70%2C2%2C184%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D5.3e-05%2C5.8e-217%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold655 SAMTools SNP 390399 390399 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C44%2C2%2C20%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.21%2C1.5e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold655 SAMTools SNP 390512 390512 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C3%2C100%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 390702 390702 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C14%2C171%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C3.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 390727 390727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D401%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D238%2C37%2C106%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C2.3e-08%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 391018 391018 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C202%2C24%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 391035 391035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C158%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 391288 391288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C8%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 391311 391311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C11%2C73%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 391684 391684 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C38%2C147%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 391741 391741 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C66%2C0%2C59%3BMQ%3D50%3BFQ%3D65%3BPV4%3D4.2e-05%2C3e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold655 SAMTools SNP 392607 392607 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C26%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold655 SAMTools SNP 393064 393064 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D300%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C290%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 393068 393068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C250%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold655 SAMTools SNP 393178 393178 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C116%2C13%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D5.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold655 SAMTools SNP 394559 394559 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold655 SAMTools SNP 395168 395168 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold655 SAMTools SNP 397173 397173 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C12%2C111%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C2.5e-70%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 397317 397317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D309%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C130%2C63%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-43%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 397984 397984 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C141%2C13%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D2e-06%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold655 SAMTools SNP 398537 398537 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D852%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D382%2C27%2C419%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold655 SAMTools SNP 399783 399783 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold658 SAMTools SNP 5960 5960 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 5992 5992 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 6955 6955 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold658 SAMTools SNP 7133 7133 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold658 SAMTools SNP 7966 7966 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold658 SAMTools SNP 28092 28092 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00036%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold658 SAMTools SNP 99070 99070 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold658 SAMTools SNP 99075 99075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold658 SAMTools SNP 99112 99112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 99475 99475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold658 SAMTools SNP 99788 99788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold658 SAMTools SNP 100415 100415 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0123%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.58%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold658 SAMTools SNP 100936 100936 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold658 SAMTools SNP 101929 101929 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C3%2C14%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-06%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 102412 102412 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C36%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold658 SAMTools SNP 102445 102445 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C0%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.23%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C211:99 scaffold658 SAMTools SNP 102923 102923 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C0%2C25%3BMQ%3D50%3BFQ%3D214%3BPV4%3D3.4e-06%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold658 SAMTools SNP 102947 102947 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.00016%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold658 SAMTools SNP 103013 103013 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold658 SAMTools SNP 103299 103299 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold658 SAMTools SNP 103326 103326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C18%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold658 SAMTools SNP 103643 103643 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold658 SAMTools SNP 103906 103906 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C232:99 scaffold658 SAMTools SNP 104050 104050 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0035%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C127:49 scaffold658 SAMTools SNP 104077 104077 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold658 SAMTools SNP 104089 104089 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.17%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold658 SAMTools SNP 105344 105344 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C35%2C3%2C13%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.36%2C0.018%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold658 SAMTools SNP 105356 105356 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C0%2C22%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.17%2C1%2C1%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold658 SAMTools SNP 105371 105371 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C68%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 109342 109342 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.064%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C214:99 scaffold658 SAMTools SNP 109360 109360 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold658 SAMTools SNP 109465 109465 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C23%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C240:99 scaffold658 SAMTools SNP 109889 109889 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold658 SAMTools SNP 110532 110532 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C234:99 scaffold658 SAMTools SNP 110544 110544 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C248:99 scaffold658 SAMTools SNP 112932 112932 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold658 SAMTools SNP 112983 112983 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 113004 113004 87 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C27%2C0:51 scaffold658 SAMTools SNP 113103 113103 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C96%2C0:99 scaffold658 SAMTools SNP 113256 113256 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0083%2C5.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C190:68 scaffold658 SAMTools SNP 113610 113610 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold658 SAMTools SNP 113889 113889 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold658 SAMTools SNP 113901 113901 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold658 SAMTools SNP 115830 115830 31 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C27%2C0:50 scaffold658 SAMTools SNP 116450 116450 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.42%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold658 SAMTools SNP 116796 116796 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold658 SAMTools SNP 117482 117482 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.039%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold658 SAMTools SNP 117913 117913 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.0031%2C0.49%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold658 SAMTools SNP 119194 119194 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.31%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold658 SAMTools SNP 119209 119209 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold658 SAMTools SNP 119248 119248 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 120029 120029 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold658 SAMTools SNP 120050 120050 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C10%2C0:17 scaffold658 SAMTools SNP 121133 121133 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C102:99 scaffold658 SAMTools SNP 121154 121154 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D47%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C58:61 scaffold658 SAMTools SNP 121229 121229 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold658 SAMTools SNP 121801 121801 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold658 SAMTools SNP 121804 121804 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold658 SAMTools SNP 121992 121992 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 121996 121996 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 122464 122464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold658 SAMTools SNP 122509 122509 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C184:99 scaffold658 SAMTools SNP 123111 123111 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold658 SAMTools SNP 123117 123117 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.0024%2C2e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold658 SAMTools SNP 124500 124500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C94%3BMQ%3D50%3BFQ%3D-263%3BPV4%3D0.011%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C236%2C0:99 scaffold658 SAMTools SNP 124823 124823 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C2%2C5%3BMQ%3D35%3BFQ%3D94%3BPV4%3D0.41%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C182:99 scaffold658 SAMTools SNP 130831 130831 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C113%2C12%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 133223 133223 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C61%2C9%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 227279 227279 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold658 SAMTools SNP 228223 228223 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 229722 229722 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0073%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C160:53 scaffold658 SAMTools SNP 313002 313002 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold658 SAMTools SNP 313926 313926 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold658 SAMTools SNP 313971 313971 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 314336 314336 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 314868 314868 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 314970 314970 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.21%2C0.0057%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C236:99 scaffold658 SAMTools SNP 315458 315458 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C152:99 scaffold658 SAMTools SNP 315908 315908 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold658 SAMTools SNP 315950 315950 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold658 SAMTools SNP 315969 315969 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold658 SAMTools SNP 316227 316227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold658 SAMTools SNP 316257 316257 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C78%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold658 SAMTools SNP 316689 316689 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold658 SAMTools SNP 317715 317715 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold658 SAMTools SNP 317721 317721 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold658 SAMTools SNP 318177 318177 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold658 SAMTools SNP 318228 318228 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold658 SAMTools SNP 318252 318252 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold658 SAMTools SNP 318871 318871 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 318872 318872 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 319283 319283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold658 SAMTools SNP 319315 319315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D45%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold658 SAMTools SNP 319721 319721 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold658 SAMTools SNP 320864 320864 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 320894 320894 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.29%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold658 SAMTools SNP 321346 321346 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C157:42 scaffold658 SAMTools SNP 322007 322007 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold658 SAMTools SNP 322013 322013 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 322955 322955 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold658 SAMTools SNP 324848 324848 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 329881 329881 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 358658 358658 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 362531 362531 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 362630 362630 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold658 SAMTools SNP 369312 369312 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold658 SAMTools SNP 370852 370852 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold658 SAMTools SNP 370894 370894 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 373059 373059 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold658 SAMTools SNP 373329 373329 11.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C11%2C5%2C41%2C0%2C38:9 scaffold658 SAMTools SNP 373380 373380 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold658 SAMTools SNP 373998 373998 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C7%2C7%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C5.7e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold658 SAMTools SNP 374343 374343 87 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.28%2C0.17%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold658 SAMTools SNP 385161 385161 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold658 SAMTools SNP 399209 399209 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold658 SAMTools SNP 399311 399311 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold658 SAMTools SNP 401501 401501 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 443996 443996 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold658 SAMTools SNP 446674 446674 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold658 SAMTools SNP 491066 491066 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 491081 491081 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold658 SAMTools SNP 492793 492793 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold658 SAMTools SNP 504190 504190 19 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold658 SAMTools SNP 504460 504460 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold658 SAMTools SNP 504466 504466 222 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0%2C239%2C8%2C236:93 scaffold658 SAMTools SNP 542148 542148 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold658 SAMTools SNP 542220 542220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold658 SAMTools SNP 549716 549716 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold658 SAMTools SNP 549740 549740 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold658 SAMTools SNP 560780 560780 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold658 SAMTools SNP 561869 561869 49.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold658 SAMTools SNP 562013 562013 43.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold658 SAMTools SNP 562023 562023 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C73:31 scaffold659 SAMTools SNP 11587 11587 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold659 SAMTools SNP 103142 103142 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold659 SAMTools SNP 117985 117985 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C156:70 scaffold659 SAMTools SNP 128227 128227 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D13%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C144%2C0:81 scaffold659 SAMTools SNP 137256 137256 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2.8e-06%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold659 SAMTools SNP 137908 137908 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold659 SAMTools SNP 138428 138428 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.18%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold659 SAMTools SNP 138439 138439 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold659 SAMTools SNP 138609 138609 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold659 SAMTools SNP 138645 138645 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold659 SAMTools SNP 138801 138801 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold659 SAMTools SNP 138846 138846 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold659 SAMTools SNP 138937 138937 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold659 SAMTools SNP 139024 139024 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold659 SAMTools SNP 139264 139264 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0059%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold659 SAMTools SNP 139279 139279 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C96:99 scaffold659 SAMTools SNP 139342 139342 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold659 SAMTools SNP 139352 139352 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold659 SAMTools SNP 139387 139387 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold659 SAMTools SNP 139509 139509 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C102:99 scaffold659 SAMTools SNP 139530 139530 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C0.17%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold659 SAMTools SNP 139703 139703 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold659 SAMTools SNP 140090 140090 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 140269 140269 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold659 SAMTools SNP 140287 140287 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold659 SAMTools SNP 140404 140404 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold659 SAMTools SNP 140410 140410 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold659 SAMTools SNP 140769 140769 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.37%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C41:41 scaffold659 SAMTools SNP 140920 140920 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold659 SAMTools SNP 141205 141205 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 141705 141705 94.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold659 SAMTools SNP 142418 142418 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold659 SAMTools SNP 144053 144053 15.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold659 SAMTools SNP 144727 144727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C48%2C45%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 146151 146151 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold659 SAMTools SNP 146921 146921 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C14:17 scaffold659 SAMTools SNP 146922 146922 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 148763 148763 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D771%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C426%2C0%2C345%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 155010 155010 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold659 SAMTools SNP 158486 158486 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D43%3BFQ%3D104%3BPV4%3D1%2C9.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C174:99 scaffold659 SAMTools SNP 159415 159415 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C15%2C13%2C4%3BMQ%3D48%3BFQ%3D205%3BPV4%3D0.76%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold659 SAMTools SNP 162066 162066 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C44%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold659 SAMTools SNP 162593 162593 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C71%2C0%2C18%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold659 SAMTools SNP 162641 162641 96 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.58%2C0.088%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold659 SAMTools SNP 163530 163530 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C10%3BMQ%3D34%3BFQ%3D142%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C212:99 scaffold659 SAMTools SNP 164144 164144 67.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C0:39 scaffold659 SAMTools SNP 168486 168486 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.47%2C0.022%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold659 SAMTools SNP 176615 176615 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C90%2C0:72 scaffold659 SAMTools SNP 182728 182728 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 182757 182757 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 183161 183161 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 183177 183177 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 183462 183462 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold659 SAMTools SNP 183480 183480 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold659 SAMTools SNP 183719 183719 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.17%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold659 SAMTools SNP 183788 183788 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.63%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold659 SAMTools SNP 185136 185136 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold659 SAMTools SNP 186066 186066 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C21%3BMQ%3D31%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold659 SAMTools SNP 187180 187180 101 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D23%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C69%2C0%2C117%2C39%2C114:99 scaffold659 SAMTools SNP 187240 187240 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold659 SAMTools SNP 215010 215010 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold659 SAMTools SNP 215014 215014 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold659 SAMTools SNP 216914 216914 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold659 SAMTools SNP 217576 217576 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold659 SAMTools SNP 222221 222221 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0013%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold659 SAMTools SNP 223347 223347 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold659 SAMTools SNP 223350 223350 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold659 SAMTools SNP 223463 223463 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 246332 246332 31.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold659 SAMTools SNP 247766 247766 64.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold659 SAMTools SNP 249029 249029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C7%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 249053 249053 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold659 SAMTools SNP 249537 249537 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold659 SAMTools SNP 250202 250202 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold659 SAMTools SNP 251912 251912 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C67%2C12%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 252135 252135 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold659 SAMTools SNP 269645 269645 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold659 SAMTools SNP 271010 271010 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold659 SAMTools SNP 273155 273155 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C47%2C1%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 274713 274713 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold659 SAMTools SNP 281888 281888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 293917 293917 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1.2e-10%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C216:77 scaffold659 SAMTools SNP 293963 293963 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C54%2C0:99 scaffold659 SAMTools SNP 294211 294211 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C30%2C0:57 scaffold659 SAMTools SNP 299206 299206 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold659 SAMTools SNP 299233 299233 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold659 SAMTools SNP 299266 299266 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold659 SAMTools SNP 299344 299344 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 299916 299916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold659 SAMTools SNP 300544 300544 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold659 SAMTools SNP 300568 300568 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold659 SAMTools SNP 304891 304891 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 306083 306083 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold659 SAMTools SNP 310071 310071 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold659 SAMTools SNP 310437 310437 64.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold659 SAMTools SNP 310906 310906 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold659 SAMTools SNP 312170 312170 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold659 SAMTools SNP 313774 313774 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.2%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold659 SAMTools SNP 314061 314061 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C66%2C0:99 scaffold659 SAMTools SNP 314199 314199 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold659 SAMTools SNP 314439 314439 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C38:41 scaffold659 SAMTools SNP 319738 319738 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold659 SAMTools SNP 320252 320252 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.32%2C0.022%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold659 SAMTools SNP 320716 320716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold659 SAMTools SNP 321011 321011 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C3%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.64%2C0.44%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold659 SAMTools SNP 321026 321026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C18%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold659 SAMTools SNP 321214 321214 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C17%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 321394 321394 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold659 SAMTools SNP 323564 323564 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold659 SAMTools SNP 324226 324226 212 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C5%3BMQ%3D48%3BFQ%3D97%3BPV4%3D0.49%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C124:99 scaffold659 SAMTools SNP 324912 324912 22.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold659 SAMTools SNP 326061 326061 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C34%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold659 SAMTools SNP 326088 326088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C34%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold659 SAMTools SNP 326163 326163 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 333383 333383 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold659 SAMTools SNP 334068 334068 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold659 SAMTools SNP 334605 334605 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold659 SAMTools SNP 334866 334866 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold659 SAMTools SNP 334923 334923 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.37%2C0.42%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold659 SAMTools SNP 334995 334995 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 335492 335492 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold659 SAMTools SNP 335782 335782 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold659 SAMTools SNP 336082 336082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold659 SAMTools SNP 336467 336467 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 336486 336486 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 338062 338062 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold659 SAMTools SNP 339563 339563 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D46%3BFQ%3D26%3BPV4%3D0.51%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold659 SAMTools SNP 339592 339592 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold659 SAMTools SNP 341454 341454 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C1%2C5%3BMQ%3D49%3BFQ%3D108%3BPV4%3D0.36%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold659 SAMTools SNP 341705 341705 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C205:69 scaffold659 SAMTools SNP 341729 341729 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold659 SAMTools SNP 342406 342406 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D29%3BFQ%3D5.95%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C43:31 scaffold659 SAMTools SNP 344332 344332 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold659 SAMTools SNP 344670 344670 180 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C5%2C3%3BMQ%3D49%3BFQ%3D183%3BPV4%3D0.3%2C1%2C0.053%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold659 SAMTools SNP 345210 345210 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C2%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.038%2C0.0074%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold659 SAMTools SNP 345321 345321 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C15%2C26%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 345685 345685 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C15%2C24%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.0096%2C6e-11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold659 SAMTools SNP 346323 346323 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 346375 346375 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C27%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0044%2C3.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold659 SAMTools SNP 348124 348124 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold659 SAMTools SNP 351099 351099 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold659 SAMTools SNP 352892 352892 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.27%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold659 SAMTools SNP 356677 356677 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold659 SAMTools SNP 358892 358892 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold659 SAMTools SNP 358916 358916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold659 SAMTools SNP 359343 359343 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold659 SAMTools SNP 359654 359654 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.15%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold659 SAMTools SNP 360070 360070 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold659 SAMTools SNP 360443 360443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold659 SAMTools SNP 360531 360531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C1%2C39%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold659 SAMTools SNP 360883 360883 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold659 SAMTools SNP 364586 364586 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C209:96 scaffold659 SAMTools SNP 364712 364712 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold659 SAMTools SNP 364901 364901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C22%2C4%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.0098%2C0.27%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold659 SAMTools SNP 370211 370211 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold659 SAMTools SNP 372509 372509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C243%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold659 SAMTools SNP 372885 372885 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D466%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C114%2C133%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C9.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 374417 374417 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D510%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C507%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold659 SAMTools SNP 374461 374461 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C236:66 scaffold659 SAMTools SNP 375632 375632 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold659 SAMTools SNP 378317 378317 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C1%2C0:4 scaffold659 SAMTools SNP 378339 378339 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D1%2C0.34%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C14%2C0:25 scaffold659 SAMTools SNP 378365 378365 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold659 SAMTools SNP 378410 378410 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold659 SAMTools SNP 378636 378636 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold659 SAMTools SNP 378639 378639 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold659 SAMTools SNP 378960 378960 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C54%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold659 SAMTools SNP 379011 379011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold659 SAMTools SNP 379230 379230 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold659 SAMTools SNP 379254 379254 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold659 SAMTools SNP 379369 379369 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold659 SAMTools SNP 379432 379432 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold659 SAMTools SNP 379459 379459 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold659 SAMTools SNP 379462 379462 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold659 SAMTools SNP 379864 379864 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C3%2C24%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.28%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold659 SAMTools SNP 379912 379912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C35%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 380040 380040 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold659 SAMTools SNP 380061 380061 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C25%2C1%2C35%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.022%2C1.6e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold659 SAMTools SNP 380076 380076 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C14%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.5%2C0.095%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold659 SAMTools SNP 380326 380326 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold659 SAMTools SNP 380359 380359 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold659 SAMTools SNP 389435 389435 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold659 SAMTools SNP 392859 392859 53.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold66 SAMTools SNP 1658 1658 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold66 SAMTools SNP 1659 1659 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold66 SAMTools SNP 1786 1786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold66 SAMTools SNP 14776 14776 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold66 SAMTools SNP 15265 15265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold66 SAMTools SNP 17186 17186 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold66 SAMTools SNP 17242 17242 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold66 SAMTools SNP 17249 17249 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold66 SAMTools SNP 17257 17257 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold66 SAMTools SNP 17262 17262 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold66 SAMTools SNP 17821 17821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold66 SAMTools SNP 17857 17857 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold66 SAMTools SNP 19160 19160 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold66 SAMTools SNP 54698 54698 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold66 SAMTools SNP 86227 86227 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold66 SAMTools SNP 86276 86276 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C1%2C2%3BMQ%3D48%3BFQ%3D23%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold66 SAMTools SNP 87170 87170 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C3%2C2%3BMQ%3D48%3BFQ%3D31%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold66 SAMTools SNP 87199 87199 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C21%2C2%3BMQ%3D47%3BFQ%3D26%3BPV4%3D1%2C0.31%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C53:56 scaffold66 SAMTools SNP 87710 87710 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C4%2C0:7 scaffold66 SAMTools SNP 115414 115414 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold66 SAMTools SNP 116478 116478 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold66 SAMTools SNP 116615 116615 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C42%2C0:81 scaffold66 SAMTools SNP 116639 116639 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold66 SAMTools SNP 117029 117029 48.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold66 SAMTools SNP 117727 117727 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold660 SAMTools SNP 57 57 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold660 SAMTools SNP 6404 6404 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C24%2C0:45 scaffold660 SAMTools SNP 6471 6471 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold660 SAMTools SNP 9307 9307 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C138:51 scaffold660 SAMTools SNP 10097 10097 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold660 SAMTools SNP 10112 10112 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold660 SAMTools SNP 10532 10532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold660 SAMTools SNP 10598 10598 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.055%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold660 SAMTools SNP 13942 13942 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold660 SAMTools SNP 13954 13954 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold660 SAMTools SNP 14011 14011 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D7%2C0%2C63%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C35:38 scaffold660 SAMTools SNP 17690 17690 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C74%2C1%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D0.0093%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C14%2C0:25 scaffold660 SAMTools SNP 17756 17756 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C64%2C72%3BMQ%3D50%3BFQ%3D-246%3BPV4%3D0.063%2C4.2e-27%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C219%2C0:99 scaffold660 SAMTools SNP 17825 17825 99.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C25%2C26%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.12%2C1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C10%2C0:17 scaffold660 SAMTools SNP 18029 18029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C12%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold660 SAMTools SNP 19086 19086 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C3%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.67%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold660 SAMTools SNP 20505 20505 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold660 SAMTools SNP 21015 21015 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold660 SAMTools SNP 21364 21364 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C55%2C0%2C12%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.35%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold660 SAMTools SNP 22194 22194 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold660 SAMTools SNP 22219 22219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold660 SAMTools SNP 22997 22997 8.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold660 SAMTools SNP 25441 25441 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold660 SAMTools SNP 26434 26434 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 27701 27701 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold660 SAMTools SNP 29663 29663 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold660 SAMTools SNP 30298 30298 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D33%2C1%2C180%2C8%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold660 SAMTools SNP 31608 31608 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C73%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 31656 31656 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C30%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 32026 32026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold660 SAMTools SNP 32496 32496 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C73%2C1%2C25%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C2.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold660 SAMTools SNP 33537 33537 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C57%2C0:99 scaffold660 SAMTools SNP 33776 33776 3.41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold660 SAMTools SNP 33888 33888 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C84%2C0:99 scaffold660 SAMTools SNP 33921 33921 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold660 SAMTools SNP 35496 35496 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold660 SAMTools SNP 37082 37082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold660 SAMTools SNP 37327 37327 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C247:99 scaffold660 SAMTools SNP 37381 37381 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 37432 37432 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C166:80 scaffold660 SAMTools SNP 37790 37790 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold660 SAMTools SNP 37850 37850 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold660 SAMTools SNP 37877 37877 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold660 SAMTools SNP 38287 38287 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold660 SAMTools SNP 39097 39097 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold660 SAMTools SNP 39109 39109 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 39136 39136 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 39160 39160 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 39169 39169 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold660 SAMTools SNP 39647 39647 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold660 SAMTools SNP 39679 39679 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 39687 39687 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.39%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold660 SAMTools SNP 40031 40031 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold660 SAMTools SNP 40049 40049 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold660 SAMTools SNP 40368 40368 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold660 SAMTools SNP 40773 40773 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 40821 40821 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold660 SAMTools SNP 41341 41341 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 43344 43344 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 43371 43371 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 44238 44238 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold660 SAMTools SNP 44637 44637 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 44691 44691 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold660 SAMTools SNP 45027 45027 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold660 SAMTools SNP 45058 45058 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.44%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold660 SAMTools SNP 45064 45064 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.2%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold660 SAMTools SNP 47222 47222 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold660 SAMTools SNP 47249 47249 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold660 SAMTools SNP 50831 50831 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold660 SAMTools SNP 56564 56564 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.013%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C137:53 scaffold660 SAMTools SNP 57108 57108 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold660 SAMTools SNP 57153 57153 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 57230 57230 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold660 SAMTools SNP 57251 57251 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold660 SAMTools SNP 57748 57748 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.58%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C143:99 scaffold660 SAMTools SNP 59193 59193 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold660 SAMTools SNP 59997 59997 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold660 SAMTools SNP 60189 60189 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold660 SAMTools SNP 60282 60282 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 60330 60330 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 60758 60758 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold660 SAMTools SNP 62584 62584 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold660 SAMTools SNP 63370 63370 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C18%2C0:33 scaffold660 SAMTools SNP 63682 63682 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold660 SAMTools SNP 63712 63712 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold660 SAMTools SNP 64855 64855 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.048%2C0.00041%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold660 SAMTools SNP 64878 64878 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold660 SAMTools SNP 65170 65170 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold660 SAMTools SNP 65374 65374 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold660 SAMTools SNP 66609 66609 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 66796 66796 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold660 SAMTools SNP 67032 67032 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold660 SAMTools SNP 67671 67671 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C191:51 scaffold660 SAMTools SNP 69240 69240 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold660 SAMTools SNP 69901 69901 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold660 SAMTools SNP 69934 69934 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C0.48%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C204:99 scaffold660 SAMTools SNP 69937 69937 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C143:99 scaffold660 SAMTools SNP 69941 69941 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold660 SAMTools SNP 69961 69961 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C186:65 scaffold660 SAMTools SNP 70385 70385 19.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold660 SAMTools SNP 70424 70424 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C3.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C127:60 scaffold660 SAMTools SNP 70474 70474 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold660 SAMTools SNP 70876 70876 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold660 SAMTools SNP 70910 70910 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 72071 72071 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold660 SAMTools SNP 72251 72251 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0069%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold660 SAMTools SNP 72559 72559 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 72964 72964 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold660 SAMTools SNP 72973 72973 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold660 SAMTools SNP 72997 72997 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 73753 73753 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 74044 74044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold660 SAMTools SNP 74083 74083 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold660 SAMTools SNP 74110 74110 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D68.5%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C99:98 scaffold660 SAMTools SNP 74217 74217 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C18%2C0:33 scaffold660 SAMTools SNP 76745 76745 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold660 SAMTools SNP 77439 77439 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold660 SAMTools SNP 78022 78022 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold660 SAMTools SNP 83166 83166 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 100951 100951 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C59%3BMQ%3D6%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C255%2C0:99 scaffold660 SAMTools SNP 101633 101633 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold660 SAMTools SNP 102857 102857 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold660 SAMTools SNP 102872 102872 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold660 SAMTools SNP 104091 104091 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 104127 104127 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 104343 104343 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 104912 104912 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 105992 105992 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 106177 106177 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 106496 106496 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 133681 133681 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold660 SAMTools SNP 133858 133858 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold660 SAMTools SNP 133889 133889 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold660 SAMTools SNP 134587 134587 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold660 SAMTools SNP 134841 134841 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold660 SAMTools SNP 134999 134999 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 135651 135651 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 136009 136009 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.096%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 142369 142369 156 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C2%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold660 SAMTools SNP 144234 144234 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold660 SAMTools SNP 148514 148514 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold660 SAMTools SNP 148518 148518 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold660 SAMTools SNP 148685 148685 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.004%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 150755 150755 71 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C2%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.16%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold660 SAMTools SNP 150767 150767 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C1%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold660 SAMTools SNP 150950 150950 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold660 SAMTools SNP 151195 151195 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.24%2C0.13%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C188:58 scaffold660 SAMTools SNP 151373 151373 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold660 SAMTools SNP 152908 152908 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold660 SAMTools SNP 153031 153031 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold660 SAMTools SNP 153123 153123 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C2%2C5%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.11%2C0.00033%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold660 SAMTools SNP 153778 153778 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 153790 153790 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C22%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 154002 154002 207 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold660 SAMTools SNP 154008 154008 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C1%2C11%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold660 SAMTools SNP 168135 168135 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold660 SAMTools SNP 184477 184477 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold660 SAMTools SNP 184550 184550 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold660 SAMTools SNP 184908 184908 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 185906 185906 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.024%2C0.0063%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold660 SAMTools SNP 185909 185909 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D87%3BPV4%3D3.7e-05%2C9.3e-07%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold660 SAMTools SNP 186296 186296 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C1%2C16%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold660 SAMTools SNP 186322 186322 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C72%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold660 SAMTools SNP 189386 189386 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold660 SAMTools SNP 189624 189624 19.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold660 SAMTools SNP 189842 189842 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold660 SAMTools SNP 189870 189870 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 190882 190882 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C28%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 190909 190909 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 190993 190993 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C23%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 192741 192741 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C0%2C9%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.56%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold660 SAMTools SNP 192750 192750 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold660 SAMTools SNP 193079 193079 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold660 SAMTools SNP 193094 193094 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold660 SAMTools SNP 193199 193199 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold660 SAMTools SNP 193257 193257 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold660 SAMTools SNP 194143 194143 96 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C174%2C126%2C185%2C0%2C172:93 scaffold660 SAMTools SNP 194197 194197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold660 SAMTools SNP 194666 194666 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C14%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.31%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold660 SAMTools SNP 195112 195112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.18%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 195747 195747 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.033%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 196211 196211 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C12%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 196407 196407 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold660 SAMTools SNP 196421 196421 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold660 SAMTools SNP 196497 196497 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 196565 196565 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C66:40 scaffold660 SAMTools SNP 218281 218281 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 218310 218310 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 225553 225553 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold660 SAMTools SNP 225746 225746 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.3%2C0.49%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C245:99 scaffold660 SAMTools SNP 225783 225783 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 226151 226151 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C49%2C1%2C18%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.44%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold660 SAMTools SNP 226752 226752 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold660 SAMTools SNP 228884 228884 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold660 SAMTools SNP 229231 229231 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold660 SAMTools SNP 229244 229244 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold660 SAMTools SNP 229679 229679 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.68%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold660 SAMTools SNP 229685 229685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold660 SAMTools SNP 230512 230512 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold660 SAMTools SNP 230899 230899 221 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C5%2C43%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.66%2C0.0076%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold660 SAMTools SNP 230909 230909 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C20%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 230947 230947 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C79%2C0%2C45%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.16%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold660 SAMTools SNP 231497 231497 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 231566 231566 96 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.046%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold660 SAMTools SNP 231569 231569 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C22%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold660 SAMTools SNP 232146 232146 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C13%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold660 SAMTools SNP 232473 232473 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold660 SAMTools SNP 233196 233196 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 238904 238904 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 238950 238950 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C15%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C204:99 scaffold660 SAMTools SNP 238987 238987 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold660 SAMTools SNP 241108 241108 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold660 SAMTools SNP 241129 241129 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 241140 241140 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 241625 241625 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold660 SAMTools SNP 263335 263335 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 263374 263374 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold660 SAMTools SNP 265488 265488 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold660 SAMTools SNP 265734 265734 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.33%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 270273 270273 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold660 SAMTools SNP 270904 270904 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold660 SAMTools SNP 290161 290161 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 290184 290184 63 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold660 SAMTools SNP 292867 292867 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold660 SAMTools SNP 299177 299177 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold660 SAMTools SNP 310206 310206 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold660 SAMTools SNP 313853 313853 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 317484 317484 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.031%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold660 SAMTools SNP 320046 320046 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5633%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1751%2C1641%2C737%2C399%3BMQ%3D50%3BFQ%3D125%3BPV4%3D5.9e-15%2C0%2C0.21%2C4.9e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold660 SAMTools SNP 322157 322157 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1173%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C657%2C19%2C437%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 322181 322181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1139%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C639%2C4%2C480%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C4.7e-20%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 327815 327815 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold660 SAMTools SNP 328587 328587 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C42%2C0:81 scaffold660 SAMTools SNP 328733 328733 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold660 SAMTools SNP 330316 330316 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold660 SAMTools SNP 331687 331687 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold660 SAMTools SNP 332242 332242 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold660 SAMTools SNP 332269 332269 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold660 SAMTools SNP 332298 332298 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold660 SAMTools SNP 334451 334451 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.42%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold660 SAMTools SNP 334466 334466 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C2%3BMQ%3D48%3BFQ%3D77%3BPV4%3D0.23%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C208:99 scaffold660 SAMTools SNP 334480 334480 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D48%3BFQ%3D158%3BPV4%3D0.43%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C195:99 scaffold660 SAMTools SNP 345575 345575 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.012%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold660 SAMTools SNP 345614 345614 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold660 SAMTools SNP 345629 345629 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold660 SAMTools SNP 347602 347602 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold660 SAMTools SNP 347620 347620 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold660 SAMTools SNP 348703 348703 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C5%2C0:9 scaffold660 SAMTools SNP 348715 348715 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C24%2C0:45 scaffold660 SAMTools SNP 348751 348751 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.39%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold660 SAMTools SNP 348763 348763 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C6:9 scaffold660 SAMTools SNP 366237 366237 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C21%2C12%3BMQ%3D43%3BFQ%3D147%3BPV4%3D0.021%2C0.35%2C0.0093%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C174:99 scaffold660 SAMTools SNP 366492 366492 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C10%2C0%3BMQ%3D46%3BFQ%3D153%3BPV4%3D0.29%2C0.32%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C250:99 scaffold660 SAMTools SNP 366499 366499 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C9%2C0%3BMQ%3D47%3BFQ%3D146%3BPV4%3D0.55%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C249:99 scaffold660 SAMTools SNP 366540 366540 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold660 SAMTools SNP 366735 366735 201 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C204:99 scaffold663 SAMTools SNP 2734 2734 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 2759 2759 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 4106 4106 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 8474 8474 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold663 SAMTools SNP 9020 9020 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold663 SAMTools SNP 11789 11789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold663 SAMTools SNP 12218 12218 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.086%2C0.0045%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold663 SAMTools SNP 13248 13248 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold663 SAMTools SNP 16105 16105 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold663 SAMTools SNP 16838 16838 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold663 SAMTools SNP 20836 20836 3.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold663 SAMTools SNP 22936 22936 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold663 SAMTools SNP 30709 30709 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.29%2C9.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C183:99 scaffold663 SAMTools SNP 31556 31556 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold663 SAMTools SNP 56286 56286 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold663 SAMTools SNP 56303 56303 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold663 SAMTools SNP 56459 56459 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 57579 57579 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.28%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold663 SAMTools SNP 58064 58064 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold663 SAMTools SNP 58085 58085 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold663 SAMTools SNP 58100 58100 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C245:99 scaffold663 SAMTools SNP 58567 58567 215 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C1%2C19%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold663 SAMTools SNP 58732 58732 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C9%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C240:99 scaffold663 SAMTools SNP 58759 58759 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold663 SAMTools SNP 58768 58768 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold663 SAMTools SNP 58788 58788 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 59162 59162 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold663 SAMTools SNP 59195 59195 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold663 SAMTools SNP 59761 59761 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold663 SAMTools SNP 59764 59764 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold663 SAMTools SNP 73741 73741 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C215:99 scaffold663 SAMTools SNP 73749 73749 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D49%3BFQ%3D164%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C191:99 scaffold663 SAMTools SNP 74029 74029 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold663 SAMTools SNP 74507 74507 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D35%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C42%2C0:81 scaffold663 SAMTools SNP 74522 74522 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D45%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C51%2C0:99 scaffold663 SAMTools SNP 74654 74654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C24%3BMQ%3D47%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold663 SAMTools SNP 75131 75131 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold663 SAMTools SNP 75158 75158 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold663 SAMTools SNP 75179 75179 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 75188 75188 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold663 SAMTools SNP 76247 76247 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C45%3BMQ%3D20%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C184%2C0:99 scaffold663 SAMTools SNP 76309 76309 62.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold663 SAMTools SNP 77367 77367 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D7%2C19%2C6%2C5%3BMQ%3D22%3BFQ%3D4.13%3BPV4%3D0.14%2C0.38%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C29:32 scaffold663 SAMTools SNP 77585 77585 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C11%2C9%2C6%3BMQ%3D13%3BFQ%3D-31%3BPV4%3D0.06%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C4%2C0:7 scaffold663 SAMTools SNP 77657 77657 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C9%3BMQ%3D17%3BFQ%3D4.42%3BPV4%3D0.12%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C32:32 scaffold663 SAMTools SNP 77690 77690 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C27%2C3%3BMQ%3D32%3BFQ%3D64%3BPV4%3D0.0002%2C0.047%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C91:94 scaffold663 SAMTools SNP 77959 77959 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C0%3BMQ%3D36%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C172%2C0:99 scaffold663 SAMTools SNP 78035 78035 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C41%2C17%2C14%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold663 SAMTools SNP 78520 78520 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C29%2C10%2C13%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold663 SAMTools SNP 100833 100833 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.2e-05%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C110:37 scaffold663 SAMTools SNP 113422 113422 42 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold664 SAMTools SNP 5874 5874 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold664 SAMTools SNP 6734 6734 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C2%3BMQ%3D46%3BFQ%3D35%3BPV4%3D1%2C1%2C0.21%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold664 SAMTools SNP 6778 6778 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 8359 8359 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold664 SAMTools SNP 55324 55324 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C83%3BMQ%3D50%3BFQ%3D-188%3BPV4%3D1%2C2.7e-05%2C0.44%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C161%2C0:99 scaffold664 SAMTools SNP 71882 71882 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold664 SAMTools SNP 71927 71927 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold664 SAMTools SNP 75906 75906 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold664 SAMTools SNP 75951 75951 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C230:99 scaffold664 SAMTools SNP 75960 75960 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold664 SAMTools SNP 76405 76405 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold664 SAMTools SNP 76930 76930 220 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.052%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C140:99 scaffold664 SAMTools SNP 78963 78963 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C9.2e-05%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold664 SAMTools SNP 79720 79720 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C229:99 scaffold664 SAMTools SNP 79763 79763 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold664 SAMTools SNP 82369 82369 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold664 SAMTools SNP 83599 83599 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C32%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold664 SAMTools SNP 83624 83624 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C30%3BMQ%3D50%3BFQ%3D-151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C124%2C0:99 scaffold664 SAMTools SNP 84130 84130 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold664 SAMTools SNP 84686 84686 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C108:77 scaffold664 SAMTools SNP 85359 85359 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold664 SAMTools SNP 85431 85431 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 85437 85437 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold664 SAMTools SNP 86225 86225 104 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C118%2C204%2C0%2C195:27 scaffold664 SAMTools SNP 87339 87339 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C12%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D7.8e-05%2C0.00017%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold664 SAMTools SNP 87349 87349 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C13%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.11%2C0.11%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold664 SAMTools SNP 87369 87369 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold664 SAMTools SNP 87396 87396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold664 SAMTools SNP 88477 88477 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C18%2C0:33 scaffold664 SAMTools SNP 88489 88489 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold664 SAMTools SNP 89177 89177 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold664 SAMTools SNP 89204 89204 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold664 SAMTools SNP 89843 89843 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold664 SAMTools SNP 90381 90381 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold664 SAMTools SNP 90405 90405 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 90408 90408 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold664 SAMTools SNP 90893 90893 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold664 SAMTools SNP 90959 90959 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold664 SAMTools SNP 90968 90968 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold664 SAMTools SNP 91352 91352 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold664 SAMTools SNP 91920 91920 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold664 SAMTools SNP 91938 91938 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold664 SAMTools SNP 91944 91944 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold664 SAMTools SNP 93648 93648 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold664 SAMTools SNP 95356 95356 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold664 SAMTools SNP 95390 95390 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold664 SAMTools SNP 95440 95440 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold664 SAMTools SNP 95456 95456 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold664 SAMTools SNP 96144 96144 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold664 SAMTools SNP 96227 96227 97 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C30%2C6%2C115%2C0%2C112:45 scaffold664 SAMTools SNP 96266 96266 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold664 SAMTools SNP 96873 96873 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold664 SAMTools SNP 97268 97268 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold664 SAMTools SNP 99001 99001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C47%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.25%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold664 SAMTools SNP 99664 99664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C2%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold664 SAMTools SNP 99698 99698 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold664 SAMTools SNP 99709 99709 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C252:99 scaffold664 SAMTools SNP 100113 100113 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold664 SAMTools SNP 100134 100134 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C24%2C0:45 scaffold664 SAMTools SNP 100170 100170 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C69%2C0:99 scaffold664 SAMTools SNP 102096 102096 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C17%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0033%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C209:99 scaffold664 SAMTools SNP 102501 102501 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold664 SAMTools SNP 102591 102591 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 103419 103419 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.51%2C1.5e-14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold664 SAMTools SNP 103443 103443 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.49%2C1e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold664 SAMTools SNP 103536 103536 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold664 SAMTools SNP 104613 104613 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C87:43 scaffold664 SAMTools SNP 104614 104614 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold664 SAMTools SNP 104643 104643 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold664 SAMTools SNP 104987 104987 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D47%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C253:66 scaffold664 SAMTools SNP 105793 105793 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold664 SAMTools SNP 105796 105796 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C156:99 scaffold664 SAMTools SNP 105802 105802 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C15%2C0:27 scaffold664 SAMTools SNP 105908 105908 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.46%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold664 SAMTools SNP 105922 105922 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold664 SAMTools SNP 106656 106656 202 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C23%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.026%2C0.23%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C139:99 scaffold664 SAMTools SNP 106677 106677 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.17%2C0.082%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C141:88 scaffold664 SAMTools SNP 109890 109890 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C15:18 scaffold664 SAMTools SNP 110144 110144 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C138:51 scaffold664 SAMTools SNP 110768 110768 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.00041%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold664 SAMTools SNP 125753 125753 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 132307 132307 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C152:46 scaffold664 SAMTools SNP 132317 132317 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.09%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C174:42 scaffold664 SAMTools SNP 136034 136034 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 136124 136124 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 139618 139618 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.063%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold664 SAMTools SNP 139841 139841 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C24%2C0:45 scaffold664 SAMTools SNP 139849 139849 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0074%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold664 SAMTools SNP 139874 139874 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 141661 141661 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold664 SAMTools SNP 142380 142380 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C197:72 scaffold664 SAMTools SNP 145483 145483 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C24%2C0:45 scaffold664 SAMTools SNP 145991 145991 9.49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold664 SAMTools SNP 146395 146395 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold664 SAMTools SNP 146942 146942 57.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold664 SAMTools SNP 147187 147187 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-8.64%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C19:22 scaffold664 SAMTools SNP 148960 148960 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C24%2C0:45 scaffold664 SAMTools SNP 149203 149203 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold664 SAMTools SNP 160559 160559 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 163801 163801 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold664 SAMTools SNP 163813 163813 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold664 SAMTools SNP 163855 163855 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold664 SAMTools SNP 164635 164635 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold664 SAMTools SNP 164658 164658 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 164800 164800 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C30%2C0:57 scaffold664 SAMTools SNP 164883 164883 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C148%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold664 SAMTools SNP 164995 164995 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold664 SAMTools SNP 165012 165012 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold664 SAMTools SNP 166095 166095 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold664 SAMTools SNP 209613 209613 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold664 SAMTools SNP 265119 265119 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold664 SAMTools SNP 266441 266441 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 292363 292363 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold664 SAMTools SNP 303774 303774 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold664 SAMTools SNP 303801 303801 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.055%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C193:30 scaffold664 SAMTools SNP 381056 381056 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold664 SAMTools SNP 381063 381063 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold664 SAMTools SNP 381265 381265 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 390998 390998 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0026%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold664 SAMTools SNP 402046 402046 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold664 SAMTools SNP 402106 402106 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold664 SAMTools SNP 402216 402216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold664 SAMTools SNP 402423 402423 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold664 SAMTools SNP 402438 402438 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C129:99 scaffold664 SAMTools SNP 402443 402443 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.21%2C0.22%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold664 SAMTools SNP 440943 440943 40.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold664 SAMTools SNP 441816 441816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 454234 454234 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold664 SAMTools SNP 491277 491277 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold664 SAMTools SNP 493489 493489 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold664 SAMTools SNP 561495 561495 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 561785 561785 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 587470 587470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 593718 593718 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 594071 594071 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 594086 594086 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 595403 595403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 595755 595755 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold664 SAMTools SNP 649261 649261 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold664 SAMTools SNP 685440 685440 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.0023%2C1.1e-06%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold665 SAMTools SNP 14294 14294 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold665 SAMTools SNP 17963 17963 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0015%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C26:29 scaffold665 SAMTools SNP 18119 18119 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C46%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.5%2C0.073%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold665 SAMTools SNP 20529 20529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 20559 20559 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C3%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 20612 20612 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.056%2C0.0017%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold665 SAMTools SNP 20616 20616 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C11%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold665 SAMTools SNP 37713 37713 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold665 SAMTools SNP 43146 43146 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 57506 57506 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold665 SAMTools SNP 58134 58134 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold665 SAMTools SNP 58239 58239 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C5%3BMQ%3D43%3BFQ%3D105%3BPV4%3D0.08%2C0.38%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C148:99 scaffold665 SAMTools SNP 58853 58853 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0052%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C0%2C2%3BMQ%3D34%3BFQ%3D6.99%3BPV4%3D0.47%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C166:33 scaffold665 SAMTools SNP 58901 58901 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C2%3BMQ%3D28%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C73:57 scaffold665 SAMTools SNP 65275 65275 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold665 SAMTools SNP 66899 66899 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C9%2C0%3BMQ%3D49%3BFQ%3D88%3BPV4%3D0.094%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold665 SAMTools SNP 67890 67890 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold665 SAMTools SNP 68012 68012 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C37%3BMQ%3D49%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold665 SAMTools SNP 69136 69136 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.2%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C209:99 scaffold665 SAMTools SNP 69139 69139 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold665 SAMTools SNP 69159 69159 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold665 SAMTools SNP 71080 71080 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C250:99 scaffold665 SAMTools SNP 71242 71242 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C68%2C6%2C53%3BMQ%3D49%3BFQ%3D181%3BPV4%3D0.00039%2C2.2e-47%2C0.00013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold665 SAMTools SNP 71266 71266 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C31%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D6.9e-10%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 71290 71290 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C42%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold665 SAMTools SNP 71534 71534 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C38%2C52%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 71550 71550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C14%2C82%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 73586 73586 44.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold665 SAMTools SNP 73631 73631 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C21%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C2.2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C201:92 scaffold665 SAMTools SNP 84716 84716 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold665 SAMTools SNP 86143 86143 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold665 SAMTools SNP 86197 86197 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold665 SAMTools SNP 89866 89866 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold665 SAMTools SNP 89977 89977 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C8.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold665 SAMTools SNP 95316 95316 12 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold665 SAMTools SNP 95362 95362 16.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold665 SAMTools SNP 95620 95620 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.8e-18%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C169:53 scaffold665 SAMTools SNP 95792 95792 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C27%2C0:51 scaffold665 SAMTools SNP 95877 95877 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold665 SAMTools SNP 101933 101933 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C30%2C0:57 scaffold665 SAMTools SNP 101950 101950 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C27%2C0:51 scaffold665 SAMTools SNP 102155 102155 30.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold665 SAMTools SNP 102373 102373 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C27%2C0:51 scaffold665 SAMTools SNP 102409 102409 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C27%2C0:51 scaffold665 SAMTools SNP 102444 102444 47.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold665 SAMTools SNP 102725 102725 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold665 SAMTools SNP 102758 102758 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold665 SAMTools SNP 103239 103239 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C72%2C0:99 scaffold665 SAMTools SNP 103608 103608 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C4%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.66%2C7e-15%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold665 SAMTools SNP 103996 103996 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold665 SAMTools SNP 119109 119109 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold665 SAMTools SNP 120370 120370 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold665 SAMTools SNP 125488 125488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D581%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D35%2C38%2C271%2C231%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D0.38%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold665 SAMTools SNP 125717 125717 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C188%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold665 SAMTools SNP 126015 126015 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D963%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold665 SAMTools SNP 126270 126270 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D304%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C124%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C255%2C0:99 scaffold665 SAMTools SNP 126378 126378 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0440%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-6.97%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C21:24 scaffold665 SAMTools SNP 131113 131113 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold665 SAMTools SNP 131245 131245 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C219:99 scaffold665 SAMTools SNP 133206 133206 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.12%2C0.19%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold665 SAMTools SNP 133555 133555 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.6%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold665 SAMTools SNP 135514 135514 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold665 SAMTools SNP 135529 135529 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold665 SAMTools SNP 137925 137925 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C187:72 scaffold665 SAMTools SNP 137973 137973 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold665 SAMTools SNP 138658 138658 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold665 SAMTools SNP 138960 138960 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold665 SAMTools SNP 140338 140338 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 141058 141058 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold665 SAMTools SNP 142002 142002 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold665 SAMTools SNP 142454 142454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold665 SAMTools SNP 142765 142765 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 143162 143162 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold665 SAMTools SNP 143237 143237 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold665 SAMTools SNP 143249 143249 152 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C190:99 scaffold665 SAMTools SNP 145330 145330 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 145372 145372 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 148848 148848 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold665 SAMTools SNP 148873 148873 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold665 SAMTools SNP 149166 149166 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0366%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D7.98%3BPV4%3D0.4%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C35:38 scaffold665 SAMTools SNP 150695 150695 12.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold665 SAMTools SNP 151086 151086 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold665 SAMTools SNP 153206 153206 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold665 SAMTools SNP 153258 153258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold665 SAMTools SNP 153269 153269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold665 SAMTools SNP 153870 153870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold665 SAMTools SNP 153934 153934 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold665 SAMTools SNP 156929 156929 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold665 SAMTools SNP 157067 157067 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold665 SAMTools SNP 157971 157971 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C6%2C10%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold665 SAMTools SNP 158192 158192 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C4.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C96:99 scaffold665 SAMTools SNP 163729 163729 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 164293 164293 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold665 SAMTools SNP 170439 170439 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 170839 170839 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 174063 174063 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 174092 174092 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 174292 174292 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C197:99 scaffold665 SAMTools SNP 174548 174548 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold665 SAMTools SNP 175889 175889 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.52%2C0.059%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold665 SAMTools SNP 177243 177243 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold665 SAMTools SNP 177250 177250 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold665 SAMTools SNP 177666 177666 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold665 SAMTools SNP 178179 178179 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.085%2C0.00067%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C254:58 scaffold665 SAMTools SNP 178322 178322 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold665 SAMTools SNP 179324 179324 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold665 SAMTools SNP 181039 181039 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C72%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold665 SAMTools SNP 181140 181140 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C0%2C66%3BMQ%3D50%3BFQ%3D-97%3BPV4%3D0.043%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C70%2C0:99 scaffold665 SAMTools SNP 181260 181260 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold665 SAMTools SNP 181815 181815 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0208%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold665 SAMTools SNP 181833 181833 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold665 SAMTools SNP 182197 182197 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold665 SAMTools SNP 182229 182229 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold665 SAMTools SNP 197402 197402 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 197664 197664 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold665 SAMTools SNP 206898 206898 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 1974 1974 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 2029 2029 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 2048 2048 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 9697 9697 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 10797 10797 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold667 SAMTools SNP 10851 10851 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 10874 10874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 10888 10888 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.056%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold667 SAMTools SNP 11733 11733 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold667 SAMTools SNP 12891 12891 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.039%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold667 SAMTools SNP 12904 12904 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold667 SAMTools SNP 13035 13035 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold667 SAMTools SNP 13098 13098 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 13395 13395 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold667 SAMTools SNP 13396 13396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C220%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold667 SAMTools SNP 23060 23060 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold667 SAMTools SNP 23971 23971 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C68%3BMQ%3D5%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C255%2C0:99 scaffold667 SAMTools SNP 45009 45009 5.45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C62%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C255%2C0:45 scaffold667 SAMTools SNP 47682 47682 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C68%2C70%2C54%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.71%2C0.14%2C0.32%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold667 SAMTools SNP 47721 47721 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C82%2C28%2C16%3BMQ%3D37%3BFQ%3D163%3BPV4%3D0.24%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold667 SAMTools SNP 48510 48510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C69%2C7%2C46%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.028%2C1%2C0.012%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold667 SAMTools SNP 48534 48534 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C55%3BMQ%3D46%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold667 SAMTools SNP 48625 48625 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C2%2C5%3BMQ%3D49%3BFQ%3D122%3BPV4%3D0.01%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold667 SAMTools SNP 48658 48658 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C0%2C18%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.00034%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold667 SAMTools SNP 49422 49422 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C48%2C28%2C0%3BMQ%3D44%3BFQ%3D97%3BPV4%3D6.7e-10%2C0.095%2C5.4e-09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold667 SAMTools SNP 49423 49423 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C47%2C28%2C0%3BMQ%3D44%3BFQ%3D99%3BPV4%3D8.7e-10%2C1%2C7.2e-09%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold667 SAMTools SNP 49484 49484 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C78%2C21%3BMQ%3D46%3BFQ%3D53%3BPV4%3D3.7e-15%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold667 SAMTools SNP 49517 49517 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C31%2C0%2C26%3BMQ%3D46%3BFQ%3D17.1%3BPV4%3D2.6e-12%2C1%2C1.1e-13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold667 SAMTools SNP 49635 49635 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C37%2C1%2C18%3BMQ%3D45%3BFQ%3D122%3BPV4%3D0.03%2C1%2C3.4e-07%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold667 SAMTools SNP 51072 51072 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold667 SAMTools SNP 51138 51138 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C65%2C1%2C19%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.68%2C0.19%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold667 SAMTools SNP 51143 51143 155 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C70%2C1%2C20%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.14%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold667 SAMTools SNP 51601 51601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C86%2C4%3BMQ%3D50%3BFQ%3D-209%3BPV4%3D1%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold667 SAMTools SNP 51724 51724 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C213%2C1%2C50%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.19%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C239:53 scaffold667 SAMTools SNP 54084 54084 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C188%2C0%2C56%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold667 SAMTools SNP 54095 54095 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C185%2C0%2C52%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold667 SAMTools SNP 63103 63103 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold667 SAMTools SNP 63297 63297 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold667 SAMTools SNP 63386 63386 14.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold667 SAMTools SNP 63502 63502 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold667 SAMTools SNP 63555 63555 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold667 SAMTools SNP 66055 66055 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold67 SAMTools SNP 2039 2039 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0180%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.018%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C202:28 scaffold67 SAMTools SNP 3762 3762 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C20%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold67 SAMTools SNP 3798 3798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold67 SAMTools SNP 3863 3863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C11%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold67 SAMTools SNP 5768 5768 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold67 SAMTools SNP 11050 11050 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold67 SAMTools SNP 11086 11086 17.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C18%2C0:30 scaffold67 SAMTools SNP 11348 11348 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C54%2C0:99 scaffold67 SAMTools SNP 21959 21959 29.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C15%2C0:27 scaffold67 SAMTools SNP 25155 25155 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5691%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3198%2C522%2C798%2C311%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.7e-25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 32039 32039 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7773%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2562%2C2071%2C1198%2C1911%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 40439 40439 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 40644 40644 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D139%2C0%2C150%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 47984 47984 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C98%2C13%2C7%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.00029%2C1.1e-05%2C1%2C7.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold67 SAMTools SNP 48463 48463 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C55%2C17%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 50151 50151 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold67 SAMTools SNP 56465 56465 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C39%2C0:75 scaffold67 SAMTools SNP 56612 56612 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold67 SAMTools SNP 59966 59966 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C24%2C0:45 scaffold67 SAMTools SNP 60901 60901 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold67 SAMTools SNP 62763 62763 55.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold67 SAMTools SNP 63152 63152 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C57%2C0:98 scaffold67 SAMTools SNP 67579 67579 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C14%3BMQ%3D48%3BFQ%3D-94%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold67 SAMTools SNP 69626 69626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C30%2C33%3BMQ%3D50%3BFQ%3D-202%3BPV4%3D0.48%2C0.26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold67 SAMTools SNP 69688 69688 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C1%2C1%2C5%3BMQ%3D27%3BFQ%3D-31%3BPV4%3D0.026%2C0.00011%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C4%2C0:7 scaffold67 SAMTools SNP 72645 72645 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C30%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold67 SAMTools SNP 72984 72984 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C30%2C9%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold67 SAMTools SNP 73379 73379 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C30%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold67 SAMTools SNP 112438 112438 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold67 SAMTools SNP 113004 113004 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold67 SAMTools SNP 113289 113289 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.39%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C115:71 scaffold67 SAMTools SNP 113328 113328 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold67 SAMTools SNP 113343 113343 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold67 SAMTools SNP 153679 153679 37.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold67 SAMTools SNP 153784 153784 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 159305 159305 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.4%2C0.0011%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C127:31 scaffold67 SAMTools SNP 162530 162530 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold67 SAMTools SNP 163349 163349 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold67 SAMTools SNP 163418 163418 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 174695 174695 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.028%2C1%2C1%2C3.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold67 SAMTools SNP 175324 175324 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C96%2C2%2C12%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.2%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold67 SAMTools SNP 175791 175791 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C91%2C5%2C12%3BMQ%3D50%3BFQ%3D177%3BPV4%3D5.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C205:99 scaffold67 SAMTools SNP 175800 175800 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.068%2C1%2C1%2C7.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold67 SAMTools SNP 175870 175870 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold67 SAMTools SNP 176457 176457 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold67 SAMTools SNP 176978 176978 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold67 SAMTools SNP 179236 179236 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold67 SAMTools SNP 179240 179240 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold67 SAMTools SNP 179714 179714 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold67 SAMTools SNP 180348 180348 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C29%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold67 SAMTools SNP 181073 181073 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold67 SAMTools SNP 184193 184193 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold67 SAMTools SNP 184200 184200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold67 SAMTools SNP 185884 185884 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold67 SAMTools SNP 185902 185902 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C7%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.21%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold67 SAMTools SNP 185938 185938 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 186927 186927 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold67 SAMTools SNP 186951 186951 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C119:99 scaffold67 SAMTools SNP 189953 189953 8.22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold67 SAMTools SNP 191247 191247 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold67 SAMTools SNP 198003 198003 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 198683 198683 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 266797 266797 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 267834 267834 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 306118 306118 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold67 SAMTools SNP 306728 306728 8.65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold67 SAMTools SNP 314574 314574 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold67 SAMTools SNP 324559 324559 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold67 SAMTools SNP 324590 324590 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold67 SAMTools SNP 339212 339212 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C41:44 scaffold67 SAMTools SNP 354983 354983 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0025%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold67 SAMTools SNP 357589 357589 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold67 SAMTools SNP 359183 359183 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold67 SAMTools SNP 359711 359711 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C11%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.27%2C1.9e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold67 SAMTools SNP 362923 362923 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C250:99 scaffold67 SAMTools SNP 363040 363040 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold67 SAMTools SNP 363170 363170 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C36%2C0:68 scaffold67 SAMTools SNP 363334 363334 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold67 SAMTools SNP 363488 363488 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.2e-10%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C254:52 scaffold67 SAMTools SNP 381285 381285 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold67 SAMTools SNP 389947 389947 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C7%2C72%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C2.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 394339 394339 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C11%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold67 SAMTools SNP 395267 395267 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C24%2C0:45 scaffold67 SAMTools SNP 399965 399965 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold67 SAMTools SNP 400456 400456 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C3.9e-05%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C74:77 scaffold67 SAMTools SNP 404248 404248 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C26%2C71%2C24%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.19%2C2.5e-139%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold67 SAMTools SNP 407274 407274 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold67 SAMTools SNP 407434 407434 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold67 SAMTools SNP 409036 409036 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 409112 409112 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold67 SAMTools SNP 416342 416342 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold67 SAMTools SNP 422994 422994 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold67 SAMTools SNP 427903 427903 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 431176 431176 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold67 SAMTools SNP 435768 435768 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.012%2C9.9e-09%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C176:62 scaffold67 SAMTools SNP 440966 440966 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 441796 441796 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 464299 464299 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold67 SAMTools SNP 466885 466885 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold67 SAMTools SNP 467434 467434 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C29:32 scaffold67 SAMTools SNP 467491 467491 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold67 SAMTools SNP 467914 467914 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold67 SAMTools SNP 467935 467935 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold67 SAMTools SNP 469001 469001 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold67 SAMTools SNP 469007 469007 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold67 SAMTools SNP 469023 469023 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold67 SAMTools SNP 469142 469142 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold67 SAMTools SNP 479884 479884 60.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold67 SAMTools SNP 482929 482929 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold67 SAMTools SNP 505006 505006 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold67 SAMTools SNP 505082 505082 51.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C21%2C0:39 scaffold67 SAMTools SNP 505968 505968 32.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold67 SAMTools SNP 514539 514539 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold67 SAMTools SNP 515639 515639 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D37%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C45%2C0:87 scaffold67 SAMTools SNP 516042 516042 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D240%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C36%2C52%2C33%3BMQ%3D29%3BFQ%3D183%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold67 SAMTools SNP 516213 516213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C109%3BMQ%3D37%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold67 SAMTools SNP 518715 518715 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C3%3BMQ%3D49%3BFQ%3D46%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C230:76 scaffold670 SAMTools SNP 571 571 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 640 640 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold670 SAMTools SNP 674 674 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 1040 1040 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold670 SAMTools SNP 2638 2638 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.59%3BPV4%3D1%2C0.0024%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C35:38 scaffold670 SAMTools SNP 2679 2679 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold670 SAMTools SNP 3523 3523 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 3554 3554 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold670 SAMTools SNP 5269 5269 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold670 SAMTools SNP 5836 5836 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C2%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold670 SAMTools SNP 6593 6593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D313%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C14%2C74%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 6625 6625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C22%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 7203 7203 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold670 SAMTools SNP 7238 7238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 10136 10136 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C37%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 10150 10150 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold670 SAMTools SNP 15308 15308 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold670 SAMTools SNP 18966 18966 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C57%2C0:99 scaffold670 SAMTools SNP 19012 19012 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C45%2C0:87 scaffold670 SAMTools SNP 20970 20970 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold670 SAMTools SNP 21029 21029 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C27%2C0:51 scaffold670 SAMTools SNP 22546 22546 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold670 SAMTools SNP 22614 22614 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C249:99 scaffold670 SAMTools SNP 23036 23036 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C233:99 scaffold670 SAMTools SNP 23089 23089 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C6%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C4.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 23596 23596 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.42%2C0.13%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C218:53 scaffold670 SAMTools SNP 23614 23614 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.00023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold670 SAMTools SNP 23716 23716 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.5e-05%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C153:50 scaffold670 SAMTools SNP 23902 23902 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold670 SAMTools SNP 23929 23929 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold670 SAMTools SNP 24146 24146 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold670 SAMTools SNP 25027 25027 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold670 SAMTools SNP 27163 27163 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.08%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C175:99 scaffold670 SAMTools SNP 27181 27181 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C148:99 scaffold670 SAMTools SNP 27310 27310 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.29%2C2.1e-38%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold670 SAMTools SNP 27544 27544 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.0002%2C1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold670 SAMTools SNP 27617 27617 28 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C13%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.8e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold670 SAMTools SNP 29245 29245 47.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C21%2C0:39 scaffold670 SAMTools SNP 30138 30138 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold670 SAMTools SNP 44600 44600 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold670 SAMTools SNP 44610 44610 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 49543 49543 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold670 SAMTools SNP 49576 49576 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold670 SAMTools SNP 60038 60038 22.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold670 SAMTools SNP 73490 73490 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C45:48 scaffold670 SAMTools SNP 141487 141487 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C7.1e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C102:36 scaffold670 SAMTools SNP 151975 151975 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold670 SAMTools SNP 153516 153516 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold670 SAMTools SNP 153820 153820 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold670 SAMTools SNP 164307 164307 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 164336 164336 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold670 SAMTools SNP 165643 165643 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold670 SAMTools SNP 165659 165659 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 165677 165677 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold670 SAMTools SNP 165683 165683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold670 SAMTools SNP 166655 166655 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C57%2C72%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold670 SAMTools SNP 166931 166931 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold670 SAMTools SNP 167064 167064 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C228:99 scaffold670 SAMTools SNP 174533 174533 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 175384 175384 90.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C15%2C0:27 scaffold670 SAMTools SNP 175633 175633 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold670 SAMTools SNP 175649 175649 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold672 SAMTools SNP 615 615 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 733 733 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 10950 10950 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold672 SAMTools SNP 12364 12364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C537%2C4%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold672 SAMTools SNP 12374 12374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C537%2C4%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold672 SAMTools SNP 24278 24278 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold672 SAMTools SNP 25604 25604 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold672 SAMTools SNP 34703 34703 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold672 SAMTools SNP 34752 34752 53.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold672 SAMTools SNP 43384 43384 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C0.00059%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold672 SAMTools SNP 44137 44137 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold672 SAMTools SNP 44154 44154 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C10%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold672 SAMTools SNP 44426 44426 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 44564 44564 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold672 SAMTools SNP 44962 44962 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.17%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C239:92 scaffold672 SAMTools SNP 45437 45437 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 45450 45450 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 49714 49714 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold672 SAMTools SNP 52618 52618 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 52745 52745 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 53640 53640 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 55265 55265 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold672 SAMTools SNP 55296 55296 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C151:31 scaffold672 SAMTools SNP 70069 70069 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0039%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold672 SAMTools SNP 70978 70978 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold672 SAMTools SNP 130808 130808 64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C38:41 scaffold672 SAMTools SNP 133295 133295 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0032%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold672 SAMTools SNP 137315 137315 14.9 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold672 SAMTools SNP 183839 183839 19.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold672 SAMTools SNP 185251 185251 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C15%2C17%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.072%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 185262 185262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 188784 188784 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C15%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold672 SAMTools SNP 188828 188828 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C17%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.49%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold672 SAMTools SNP 188832 188832 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold672 SAMTools SNP 190768 190768 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold672 SAMTools SNP 190925 190925 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold672 SAMTools SNP 193763 193763 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold672 SAMTools SNP 193778 193778 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold672 SAMTools SNP 194094 194094 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold672 SAMTools SNP 194127 194127 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold672 SAMTools SNP 194473 194473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold672 SAMTools SNP 194498 194498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C40%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold672 SAMTools SNP 194729 194729 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold672 SAMTools SNP 196652 196652 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 196658 196658 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 197261 197261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C14%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold672 SAMTools SNP 197354 197354 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C4%2C13%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.69%2C4.1e-18%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold672 SAMTools SNP 199307 199307 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.41%2C9.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C125:68 scaffold672 SAMTools SNP 199476 199476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C7%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold672 SAMTools SNP 199480 199480 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold672 SAMTools SNP 199486 199486 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.0017%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold672 SAMTools SNP 200523 200523 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold672 SAMTools SNP 201976 201976 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C209:63 scaffold672 SAMTools SNP 202019 202019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold672 SAMTools SNP 202613 202613 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold672 SAMTools SNP 204105 204105 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold672 SAMTools SNP 205462 205462 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold672 SAMTools SNP 206364 206364 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold672 SAMTools SNP 206913 206913 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold672 SAMTools SNP 206928 206928 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold672 SAMTools SNP 206982 206982 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 207033 207033 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 207338 207338 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 208693 208693 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C188:99 scaffold672 SAMTools SNP 209395 209395 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold672 SAMTools SNP 209706 209706 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C2.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold672 SAMTools SNP 209773 209773 16.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C7%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.5e-11%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold672 SAMTools SNP 212727 212727 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C37%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.12%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C207:99 scaffold672 SAMTools SNP 212767 212767 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C11%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C242:99 scaffold672 SAMTools SNP 212794 212794 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.54%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold672 SAMTools SNP 213293 213293 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C129:69 scaffold672 SAMTools SNP 217624 217624 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold672 SAMTools SNP 219315 219315 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold672 SAMTools SNP 219339 219339 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold672 SAMTools SNP 219597 219597 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C0%3BMQ%3D48%3BFQ%3D68%3BPV4%3D0.5%2C1%2C0.07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold672 SAMTools SNP 219846 219846 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold672 SAMTools SNP 219934 219934 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C4%2C2%3BMQ%3D44%3BFQ%3D43%3BPV4%3D1%2C0.099%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold672 SAMTools SNP 220199 220199 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C1%3BMQ%3D46%3BFQ%3D30%3BPV4%3D1%2C1%2C0.16%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold672 SAMTools SNP 220264 220264 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold672 SAMTools SNP 220273 220273 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D47%3BFQ%3D39%3BPV4%3D1%2C0.3%2C0.31%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C66:69 scaffold672 SAMTools SNP 220827 220827 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 220854 220854 59.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold672 SAMTools SNP 222202 222202 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C24%2C0:45 scaffold672 SAMTools SNP 222465 222465 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold672 SAMTools SNP 222508 222508 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 223142 223142 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C10%2C0:17 scaffold672 SAMTools SNP 223196 223196 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold672 SAMTools SNP 223232 223232 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 223242 223242 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold672 SAMTools SNP 224686 224686 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 225264 225264 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 225267 225267 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 225726 225726 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 225744 225744 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 226609 226609 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 226645 226645 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold672 SAMTools SNP 227079 227079 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold672 SAMTools SNP 227537 227537 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold672 SAMTools SNP 227615 227615 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 227671 227671 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 228258 228258 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 229310 229310 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 229553 229553 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold672 SAMTools SNP 229577 229577 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold672 SAMTools SNP 231348 231348 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold672 SAMTools SNP 231399 231399 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold672 SAMTools SNP 232292 232292 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold672 SAMTools SNP 232310 232310 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D0.4%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C127:41 scaffold672 SAMTools SNP 232900 232900 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold672 SAMTools SNP 232933 232933 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold672 SAMTools SNP 233113 233113 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold672 SAMTools SNP 233143 233143 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.42%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold672 SAMTools SNP 233467 233467 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 233646 233646 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold672 SAMTools SNP 233676 233676 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold672 SAMTools SNP 234011 234011 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold672 SAMTools SNP 234017 234017 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold672 SAMTools SNP 234542 234542 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold672 SAMTools SNP 235155 235155 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold672 SAMTools SNP 235606 235606 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 235715 235715 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold672 SAMTools SNP 241884 241884 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C11%2C79%2C11%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C4.6e-71%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold672 SAMTools SNP 241944 241944 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C90%2C17%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 243765 243765 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C28%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C132%2C0:99 scaffold672 SAMTools SNP 243839 243839 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C1%2C11%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold672 SAMTools SNP 243840 243840 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 244351 244351 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold672 SAMTools SNP 244391 244391 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C26%2C10%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C2.7e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold672 SAMTools SNP 287370 287370 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.3e-06%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C107:39 scaffold672 SAMTools SNP 287489 287489 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold672 SAMTools SNP 288309 288309 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C27%2C0:51 scaffold672 SAMTools SNP 288314 288314 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 293669 293669 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.083%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C14:17 scaffold672 SAMTools SNP 293700 293700 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C12%2C0:21 scaffold672 SAMTools SNP 294254 294254 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold672 SAMTools SNP 294278 294278 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold672 SAMTools SNP 294299 294299 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold672 SAMTools SNP 296053 296053 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.52%2C0.1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C221:99 scaffold672 SAMTools SNP 297688 297688 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 298080 298080 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C111:40 scaffold672 SAMTools SNP 298131 298131 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold672 SAMTools SNP 298675 298675 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold672 SAMTools SNP 299164 299164 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C176:99 scaffold672 SAMTools SNP 299252 299252 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold672 SAMTools SNP 299313 299313 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 308485 308485 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 308711 308711 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 308715 308715 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 309818 309818 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 332877 332877 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 334834 334834 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 334873 334873 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 351747 351747 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C209:99 scaffold672 SAMTools SNP 351759 351759 168 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.2%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C186:99 scaffold672 SAMTools SNP 367950 367950 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 384435 384435 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold672 SAMTools SNP 384462 384462 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 388367 388367 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C10%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.7e-06%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 388439 388439 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 392229 392229 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C30%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold672 SAMTools SNP 392467 392467 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 399281 399281 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 399295 399295 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 399298 399298 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 399551 399551 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 399572 399572 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold672 SAMTools SNP 401022 401022 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C32%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 401085 401085 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C26%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 402270 402270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C35%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold672 SAMTools SNP 406981 406981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C69%3BMQ%3D49%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold672 SAMTools SNP 407042 407042 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold672 SAMTools SNP 407089 407089 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C10%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.73%2C0.3%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 409980 409980 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.38%2C0.0048%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold672 SAMTools SNP 410117 410117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C36%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold672 SAMTools SNP 410423 410423 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C57:60 scaffold672 SAMTools SNP 410452 410452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold672 SAMTools SNP 410485 410485 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold672 SAMTools SNP 412108 412108 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.018%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold672 SAMTools SNP 412266 412266 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.28%2C1%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold672 SAMTools SNP 412453 412453 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 412484 412484 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.45%2C3.7e-08%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold672 SAMTools SNP 413905 413905 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C3%2C45%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.63%2C2.7e-86%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold672 SAMTools SNP 413937 413937 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C75%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C238%2C0:99 scaffold672 SAMTools SNP 436685 436685 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 436730 436730 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold672 SAMTools SNP 437383 437383 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold672 SAMTools SNP 437849 437849 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 438878 438878 71.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C12%2C0:21 scaffold672 SAMTools SNP 441983 441983 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-3.21%3BPV4%3D0.029%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C27:31 scaffold672 SAMTools SNP 442636 442636 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C54%2C0:99 scaffold672 SAMTools SNP 442736 442736 48.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold672 SAMTools SNP 442766 442766 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold672 SAMTools SNP 443677 443677 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C24%2C0:45 scaffold672 SAMTools SNP 446680 446680 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 447344 447344 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold672 SAMTools SNP 447415 447415 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold672 SAMTools SNP 447600 447600 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 448128 448128 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.07%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold672 SAMTools SNP 448707 448707 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 449407 449407 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 449420 449420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 449491 449491 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 449495 449495 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 452918 452918 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 452935 452935 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 452967 452967 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold672 SAMTools SNP 453426 453426 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold672 SAMTools SNP 453935 453935 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold672 SAMTools SNP 454341 454341 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold672 SAMTools SNP 454872 454872 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 455435 455435 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 455465 455465 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold672 SAMTools SNP 456038 456038 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.25%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold672 SAMTools SNP 456689 456689 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold672 SAMTools SNP 456725 456725 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C197:99 scaffold672 SAMTools SNP 456737 456737 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C0.13%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold672 SAMTools SNP 460078 460078 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold672 SAMTools SNP 460110 460110 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold672 SAMTools SNP 460167 460167 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.36%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold672 SAMTools SNP 460380 460380 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold672 SAMTools SNP 460383 460383 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.23%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold672 SAMTools SNP 460418 460418 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold672 SAMTools SNP 461298 461298 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C24%2C0:45 scaffold672 SAMTools SNP 461316 461316 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 462191 462191 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold672 SAMTools SNP 462315 462315 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 462347 462347 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 463224 463224 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 463794 463794 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold672 SAMTools SNP 469408 469408 23.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold672 SAMTools SNP 469999 469999 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C0.00036%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold672 SAMTools SNP 470029 470029 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold672 SAMTools SNP 470053 470053 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold672 SAMTools SNP 470438 470438 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold672 SAMTools SNP 470486 470486 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold672 SAMTools SNP 471122 471122 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold672 SAMTools SNP 471861 471861 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.036%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C191:31 scaffold672 SAMTools SNP 471886 471886 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold672 SAMTools SNP 471887 471887 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold672 SAMTools SNP 471957 471957 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C39%2C0:75 scaffold672 SAMTools SNP 472158 472158 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.34%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold672 SAMTools SNP 472167 472167 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold672 SAMTools SNP 472219 472219 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C205:96 scaffold672 SAMTools SNP 482195 482195 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold672 SAMTools SNP 482816 482816 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 482826 482826 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 522464 522464 21.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold672 SAMTools SNP 554294 554294 60 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold672 SAMTools SNP 592561 592561 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 592563 592563 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 593523 593523 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold672 SAMTools SNP 599953 599953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold672 SAMTools SNP 600394 600394 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 604497 604497 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold672 SAMTools SNP 617173 617173 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold672 SAMTools SNP 641942 641942 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold672 SAMTools SNP 641992 641992 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C72%2C0:99 scaffold672 SAMTools SNP 642155 642155 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C6%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C4.4e-11%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold672 SAMTools SNP 642877 642877 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 642887 642887 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold672 SAMTools SNP 646809 646809 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.16%2C0.0057%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold672 SAMTools SNP 646818 646818 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 647240 647240 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold672 SAMTools SNP 647245 647245 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold672 SAMTools SNP 648015 648015 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold672 SAMTools SNP 648058 648058 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.24%2C0.0019%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold672 SAMTools SNP 648284 648284 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold672 SAMTools SNP 648452 648452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C21%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold672 SAMTools SNP 648833 648833 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C78%2C0:99 scaffold672 SAMTools SNP 648986 648986 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C114%2C0:99 scaffold672 SAMTools SNP 649332 649332 71 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C33%2C0:63 scaffold672 SAMTools SNP 656207 656207 16.9 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold672 SAMTools SNP 656280 656280 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold673 SAMTools SNP 43 43 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold673 SAMTools SNP 54 54 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold673 SAMTools SNP 115 115 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold673 SAMTools SNP 7330 7330 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold673 SAMTools SNP 7641 7641 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.38%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold673 SAMTools SNP 7731 7731 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold673 SAMTools SNP 8571 8571 186 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C169:99 scaffold673 SAMTools SNP 10591 10591 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold673 SAMTools SNP 10647 10647 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold673 SAMTools SNP 10733 10733 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold673 SAMTools SNP 10938 10938 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold673 SAMTools SNP 11155 11155 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold673 SAMTools SNP 11163 11163 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold673 SAMTools SNP 15399 15399 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold673 SAMTools SNP 40911 40911 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold673 SAMTools SNP 41414 41414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C48%2C26%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold673 SAMTools SNP 41801 41801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold673 SAMTools SNP 42777 42777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold673 SAMTools SNP 42810 42810 132 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C126%2C0:99 scaffold673 SAMTools SNP 44043 44043 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.46%2C0.024%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C208:55 scaffold673 SAMTools SNP 45106 45106 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold673 SAMTools SNP 45160 45160 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold673 SAMTools SNP 45860 45860 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C2%2C47%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.35%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold673 SAMTools SNP 45944 45944 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold673 SAMTools SNP 74999 74999 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C8%2C65%2C13%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.64%2C1.7e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold673 SAMTools SNP 85146 85146 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C8%2C3%3BMQ%3D41%3BFQ%3D216%3BPV4%3D0.16%2C0.0019%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold673 SAMTools SNP 85161 85161 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C3%2C0%3BMQ%3D32%3BFQ%3D23%3BPV4%3D0.075%2C0.39%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C171:53 scaffold673 SAMTools SNP 85795 85795 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D30%3BFQ%3D32.7%3BPV4%3D0.11%2C0.33%2C0.02%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C60:63 scaffold673 SAMTools SNP 85825 85825 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold673 SAMTools SNP 86327 86327 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C143:99 scaffold673 SAMTools SNP 86390 86390 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C57%2C0:99 scaffold673 SAMTools SNP 86423 86423 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C76%2C31:87 scaffold673 SAMTools SNP 86953 86953 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C17%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C33:36 scaffold673 SAMTools SNP 87013 87013 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.08%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C197:99 scaffold673 SAMTools SNP 87036 87036 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.7e-11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C218:30 scaffold673 SAMTools SNP 89721 89721 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C6%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.7%2C4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold673 SAMTools SNP 89970 89970 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold673 SAMTools SNP 97422 97422 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.5e-25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C235:40 scaffold673 SAMTools SNP 98499 98499 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.22%2C2.2e-15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C183:50 scaffold673 SAMTools SNP 98553 98553 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.4%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C117:63 scaffold673 SAMTools SNP 107177 107177 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C60%2C0%2C30%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.3%2C1.8e-48%2C1%2C3.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold673 SAMTools SNP 107749 107749 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C45%2C22%2C50%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.85%2C8.1e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold673 SAMTools SNP 107789 107789 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C55%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold673 SAMTools SNP 107840 107840 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C4%2C30%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold675 SAMTools SNP 1209 1209 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 1285 1285 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 1312 1312 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 2649 2649 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold675 SAMTools SNP 35091 35091 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 35131 35131 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold675 SAMTools SNP 35874 35874 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 42162 42162 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 42281 42281 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 49560 49560 4.75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold675 SAMTools SNP 55922 55922 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 55975 55975 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 62502 62502 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold675 SAMTools SNP 74581 74581 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold675 SAMTools SNP 75409 75409 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 93929 93929 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold675 SAMTools SNP 93968 93968 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.44%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C180:99 scaffold675 SAMTools SNP 94754 94754 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold675 SAMTools SNP 94858 94858 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C14%2C23%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.29%2C1.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C241:99 scaffold675 SAMTools SNP 94882 94882 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C12%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.4%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold675 SAMTools SNP 95254 95254 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C33%2C15%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold675 SAMTools SNP 95286 95286 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0071%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.028%2C1%2C1%2C0.00062;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold675 SAMTools SNP 95947 95947 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C21%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0021%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold675 SAMTools SNP 95954 95954 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C0.39%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold675 SAMTools SNP 97531 97531 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C23%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.34%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 97538 97538 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C23%2C27%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.16%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 97588 97588 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C44%2C0%2C19%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0005%2C1e-05%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold675 SAMTools SNP 99146 99146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold675 SAMTools SNP 99703 99703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold675 SAMTools SNP 99761 99761 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 100605 100605 6.17 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold675 SAMTools SNP 106694 106694 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C37%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C121:99 scaffold675 SAMTools SNP 106790 106790 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C199:51 scaffold675 SAMTools SNP 107077 107077 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold675 SAMTools SNP 107083 107083 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 107347 107347 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold675 SAMTools SNP 107494 107494 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C225:99 scaffold675 SAMTools SNP 107985 107985 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 108056 108056 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.015%2C0.33%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold675 SAMTools SNP 108115 108115 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C158:99 scaffold675 SAMTools SNP 108160 108160 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 108377 108377 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold675 SAMTools SNP 108455 108455 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold675 SAMTools SNP 109548 109548 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C10%2C19%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold675 SAMTools SNP 109556 109556 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C1%2C17%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.033%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold675 SAMTools SNP 109590 109590 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.52%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold675 SAMTools SNP 111993 111993 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C57%2C0:99 scaffold675 SAMTools SNP 113134 113134 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C55%3BMQ%3D50%3BFQ%3D-156%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C129%2C0:99 scaffold675 SAMTools SNP 114638 114638 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 128227 128227 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.014%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold675 SAMTools SNP 142120 142120 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold675 SAMTools SNP 142383 142383 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold675 SAMTools SNP 142999 142999 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold675 SAMTools SNP 143029 143029 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C24%2C0:45 scaffold675 SAMTools SNP 143059 143059 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold675 SAMTools SNP 143542 143542 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 144421 144421 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 144549 144549 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 144589 144589 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 145204 145204 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 145229 145229 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 148380 148380 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold675 SAMTools SNP 148440 148440 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold675 SAMTools SNP 149373 149373 31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C4.2e-07%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C212:64 scaffold675 SAMTools SNP 149404 149404 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C45%2C0:87 scaffold675 SAMTools SNP 149467 149467 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold675 SAMTools SNP 149500 149500 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold675 SAMTools SNP 150317 150317 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 150466 150466 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold675 SAMTools SNP 150917 150917 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold675 SAMTools SNP 150938 150938 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold675 SAMTools SNP 151510 151510 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 151543 151543 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 151621 151621 17.1 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold675 SAMTools SNP 151645 151645 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold675 SAMTools SNP 152163 152163 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 159432 159432 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold675 SAMTools SNP 159979 159979 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.028%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold675 SAMTools SNP 160855 160855 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 160921 160921 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 161426 161426 163 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C48%2C0:93 scaffold675 SAMTools SNP 161453 161453 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold675 SAMTools SNP 161552 161552 135 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold675 SAMTools SNP 161559 161559 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C27%2C0:51 scaffold675 SAMTools SNP 161748 161748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold675 SAMTools SNP 161820 161820 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 161886 161886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 162417 162417 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold675 SAMTools SNP 162460 162460 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold675 SAMTools SNP 162784 162784 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 162859 162859 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.36%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 163452 163452 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold675 SAMTools SNP 163491 163491 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold675 SAMTools SNP 163523 163523 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 163916 163916 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold675 SAMTools SNP 164593 164593 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold675 SAMTools SNP 164640 164640 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold675 SAMTools SNP 164966 164966 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold675 SAMTools SNP 166181 166181 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C5%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.019%2C0.00062%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold675 SAMTools SNP 166245 166245 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold675 SAMTools SNP 166485 166485 114 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.033%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold675 SAMTools SNP 166539 166539 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C25%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C4.1e-08%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 166579 166579 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 167136 167136 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 167925 167925 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold675 SAMTools SNP 168153 168153 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold675 SAMTools SNP 168913 168913 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C29%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold675 SAMTools SNP 168923 168923 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C2%2C4%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.68%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold675 SAMTools SNP 169677 169677 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C146:99 scaffold675 SAMTools SNP 169710 169710 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C16%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold675 SAMTools SNP 170123 170123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold675 SAMTools SNP 172233 172233 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold675 SAMTools SNP 172247 172247 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 172281 172281 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold675 SAMTools SNP 172320 172320 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold675 SAMTools SNP 172341 172341 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold675 SAMTools SNP 172721 172721 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.31%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold675 SAMTools SNP 172731 172731 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C0.0093%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold675 SAMTools SNP 172732 172732 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.54%2C0.31%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold675 SAMTools SNP 184083 184083 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C253:99 scaffold675 SAMTools SNP 184107 184107 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D434%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold675 SAMTools SNP 189066 189066 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold675 SAMTools SNP 192531 192531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C70%2C88%2C346%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-25%2C1%2C1%2C1e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 193687 193687 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C43%2C55%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 194256 194256 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 194417 194417 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 198212 198212 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D897%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C324%2C46%2C470%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0077%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 198842 198842 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold675 SAMTools SNP 199868 199868 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold675 SAMTools SNP 199925 199925 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold675 SAMTools SNP 200597 200597 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D190%2C44%2C86%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 200606 200606 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C209%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 203023 203023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D498%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C244%2C8%2C168%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-09%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 203044 203044 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C136%2C25%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1.6e-08%2C1%2C6.8e-25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 203065 203065 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C25%2C8%2C6%3BMQ%3D49%3BFQ%3D108%3BPV4%3D0.56%2C1%2C0.098%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold675 SAMTools SNP 203074 203074 182 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C96%3BMQ%3D50%3BFQ%3D-242;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C40%2C255%2C0%2C200:99 scaffold675 SAMTools SNP 203128 203128 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C76%2C83%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.4e-08%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 203569 203569 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold675 SAMTools SNP 203931 203931 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C63%2C57%2C80%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.088%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 204030 204030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C84%2C255%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1.2e-31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 204500 204500 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D746%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D499%2C31%2C177%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-06%2C0.36%2C0.059%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 204524 204524 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D850%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D452%2C210%2C158%2C30%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1.4e-05%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold675 SAMTools SNP 205208 205208 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C73%2C324%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 205436 205436 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C10%2C17%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold675 SAMTools SNP 207453 207453 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C25%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.43%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 207465 207465 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C33%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C3.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 207818 207818 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold675 SAMTools SNP 207821 207821 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold675 SAMTools SNP 209170 209170 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 211674 211674 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 215598 215598 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 215633 215633 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 222639 222639 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C178:54 scaffold675 SAMTools SNP 223107 223107 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold675 SAMTools SNP 224514 224514 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold675 SAMTools SNP 224877 224877 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C244%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 224889 224889 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C97%2C2%3BMQ%3D50%3BFQ%3D-265%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold675 SAMTools SNP 224895 224895 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D406%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C45%2C0:87 scaffold675 SAMTools SNP 225209 225209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 225389 225389 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C18%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 226038 226038 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold675 SAMTools SNP 226047 226047 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.17%2C0.17%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold675 SAMTools SNP 226065 226065 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C230%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 226095 226095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D801%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C774%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 233151 233151 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 233998 233998 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 234655 234655 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold675 SAMTools SNP 237265 237265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold675 SAMTools SNP 237500 237500 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold675 SAMTools SNP 241845 241845 154 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C68:99 scaffold675 SAMTools SNP 242100 242100 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold675 SAMTools SNP 242245 242245 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold675 SAMTools SNP 242260 242260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold675 SAMTools SNP 242897 242897 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.32%2C0.088%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold675 SAMTools SNP 244905 244905 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 245578 245578 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 245620 245620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C36%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.096%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 246016 246016 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00065%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 246850 246850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C33%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold675 SAMTools SNP 246913 246913 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C95:98 scaffold675 SAMTools SNP 247675 247675 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 248515 248515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.2%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 248533 248533 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.46%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 248839 248839 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.4%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold675 SAMTools SNP 249094 249094 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C192:99 scaffold675 SAMTools SNP 249424 249424 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 249430 249430 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold675 SAMTools SNP 249573 249573 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold675 SAMTools SNP 249864 249864 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold675 SAMTools SNP 249921 249921 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.44%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C193:99 scaffold675 SAMTools SNP 250390 250390 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold675 SAMTools SNP 251546 251546 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.6%2C0.5%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold675 SAMTools SNP 253639 253639 40.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C7%2C0:12 scaffold675 SAMTools SNP 253796 253796 58.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C15:18 scaffold675 SAMTools SNP 253920 253920 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold675 SAMTools SNP 254488 254488 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 254506 254506 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 254761 254761 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 258088 258088 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold675 SAMTools SNP 258134 258134 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold675 SAMTools SNP 258141 258141 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold675 SAMTools SNP 259208 259208 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 259283 259283 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 259852 259852 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 263470 263470 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold675 SAMTools SNP 263726 263726 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold675 SAMTools SNP 263756 263756 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 263762 263762 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 270677 270677 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 274546 274546 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 274778 274778 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C2%2C18%2C2%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold675 SAMTools SNP 274826 274826 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C8%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.15%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 274829 274829 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C64%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 275173 275173 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C20%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 275263 275263 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C66%2C1%2C15%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.57%2C2.1e-14%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold675 SAMTools SNP 275487 275487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00082%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 275574 275574 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.0025%2C0.00093%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold675 SAMTools SNP 277028 277028 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C0%2C7%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C245:39 scaffold675 SAMTools SNP 303895 303895 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold675 SAMTools SNP 304266 304266 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold675 SAMTools SNP 306259 306259 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 317572 317572 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.15%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold675 SAMTools SNP 317627 317627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C39:42 scaffold675 SAMTools SNP 320311 320311 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold675 SAMTools SNP 320337 320337 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold675 SAMTools SNP 323433 323433 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 323442 323442 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C5%2C53%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.076%2C0.21%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold675 SAMTools SNP 329632 329632 6.19 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D3%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C75%2C0:48 scaffold675 SAMTools SNP 337852 337852 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C15%3BMQ%3D50%3BFQ%3D-160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C133%2C0:99 scaffold675 SAMTools SNP 337906 337906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C44%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold675 SAMTools SNP 338213 338213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold675 SAMTools SNP 338226 338226 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold675 SAMTools SNP 339150 339150 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C22%2C56%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 343889 343889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C55%2C37%2C121%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 343928 343928 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C25%2C6%3BMQ%3D50%3BFQ%3D-73%3BPV4%3D0.22%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C46%2C0:89 scaffold675 SAMTools SNP 344454 344454 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.57%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C147:99 scaffold675 SAMTools SNP 344457 344457 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold675 SAMTools SNP 344469 344469 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold675 SAMTools SNP 344487 344487 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold675 SAMTools SNP 344742 344742 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold675 SAMTools SNP 344807 344807 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C34%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold675 SAMTools SNP 345328 345328 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C8%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 345329 345329 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 350789 350789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C2%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold675 SAMTools SNP 350803 350803 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C15%2C16%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold675 SAMTools SNP 350876 350876 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C18%2C2%2C22%3BMQ%3D50%3BFQ%3D215%3BPV4%3D7e-08%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold675 SAMTools SNP 353969 353969 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C1%2C47%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0016%2C2.7e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold675 SAMTools SNP 354047 354047 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.049%2C5.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold675 SAMTools SNP 358586 358586 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold675 SAMTools SNP 379558 379558 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 381920 381920 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 427728 427728 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold675 SAMTools SNP 428533 428533 16.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C15%2C0:25 scaffold675 SAMTools SNP 430917 430917 99.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C21%2C0:39 scaffold675 SAMTools SNP 431305 431305 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 431452 431452 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold675 SAMTools SNP 431479 431479 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold675 SAMTools SNP 431631 431631 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold675 SAMTools SNP 431752 431752 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C70:73 scaffold675 SAMTools SNP 432108 432108 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 432520 432520 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 432540 432540 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold675 SAMTools SNP 432705 432705 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 432808 432808 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold675 SAMTools SNP 433379 433379 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold675 SAMTools SNP 436341 436341 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold675 SAMTools SNP 446337 446337 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 446534 446534 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 462807 462807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold675 SAMTools SNP 462838 462838 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold675 SAMTools SNP 462881 462881 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C6%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold675 SAMTools SNP 462885 462885 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold675 SAMTools SNP 462906 462906 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C5%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.66%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold675 SAMTools SNP 464150 464150 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.062%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold675 SAMTools SNP 464154 464154 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C1%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.036%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold675 SAMTools SNP 464526 464526 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 464539 464539 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold675 SAMTools SNP 464583 464583 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold675 SAMTools SNP 466542 466542 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C6%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold675 SAMTools SNP 466561 466561 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold675 SAMTools SNP 466728 466728 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.00064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold675 SAMTools SNP 466786 466786 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.074%2C1%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold675 SAMTools SNP 466856 466856 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.31%2C3.8e-15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold675 SAMTools SNP 466949 466949 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold675 SAMTools SNP 467608 467608 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold675 SAMTools SNP 467624 467624 167 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.16%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold675 SAMTools SNP 467661 467661 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.13%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold675 SAMTools SNP 467758 467758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C3%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 468263 468263 34.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold675 SAMTools SNP 468653 468653 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.19%2C1.9e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold675 SAMTools SNP 469846 469846 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C5.2e-14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C232:57 scaffold675 SAMTools SNP 470826 470826 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 471053 471053 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 471461 471461 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.24%2C1.9e-13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C138:90 scaffold675 SAMTools SNP 471488 471488 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.091%2C5.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C231:49 scaffold675 SAMTools SNP 471524 471524 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.27%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C190:99 scaffold675 SAMTools SNP 471877 471877 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.9e-16%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C195:74 scaffold675 SAMTools SNP 472677 472677 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.29%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C252:98 scaffold675 SAMTools SNP 472775 472775 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C4.4e-05%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C104:70 scaffold675 SAMTools SNP 473082 473082 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C0.00049%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C82:57 scaffold675 SAMTools SNP 473239 473239 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 473387 473387 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 473488 473488 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold675 SAMTools SNP 473521 473521 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold675 SAMTools SNP 473677 473677 63.8 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold675 SAMTools SNP 473774 473774 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold675 SAMTools SNP 474233 474233 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 474351 474351 56.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold675 SAMTools SNP 474861 474861 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.49%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold675 SAMTools SNP 475051 475051 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold675 SAMTools SNP 475091 475091 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold675 SAMTools SNP 476179 476179 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 478562 478562 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold675 SAMTools SNP 478905 478905 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 479087 479087 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 479386 479386 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold675 SAMTools SNP 479855 479855 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 480226 480226 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold675 SAMTools SNP 481758 481758 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold675 SAMTools SNP 482072 482072 5.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold675 SAMTools SNP 482135 482135 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 482166 482166 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold675 SAMTools SNP 482168 482168 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold675 SAMTools SNP 482359 482359 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold675 SAMTools SNP 482533 482533 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 483335 483335 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold675 SAMTools SNP 483608 483608 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 483797 483797 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold675 SAMTools SNP 484002 484002 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold675 SAMTools SNP 484143 484143 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold675 SAMTools SNP 484331 484331 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold675 SAMTools SNP 484457 484457 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 485292 485292 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 485650 485650 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 486514 486514 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold675 SAMTools SNP 486521 486521 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold675 SAMTools SNP 486715 486715 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold675 SAMTools SNP 487760 487760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold675 SAMTools SNP 489030 489030 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold675 SAMTools SNP 491834 491834 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C40%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.0094%2C4.8e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold675 SAMTools SNP 491858 491858 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C23%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C2.1e-43%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold675 SAMTools SNP 491873 491873 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1.8e-20%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 491954 491954 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C43%2C3%2C5%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.036%2C0.047%2C1%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold675 SAMTools SNP 492451 492451 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 492552 492552 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 492732 492732 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold675 SAMTools SNP 492866 492866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 492896 492896 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 492925 492925 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.42%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 492950 492950 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C10%2C3%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.27%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold675 SAMTools SNP 492956 492956 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C0%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.036%2C0.32%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold675 SAMTools SNP 493010 493010 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 493213 493213 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 493237 493237 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold675 SAMTools SNP 493804 493804 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.4%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C171:99 scaffold675 SAMTools SNP 493958 493958 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C67:31 scaffold675 SAMTools SNP 494117 494117 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold675 SAMTools SNP 494246 494246 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold675 SAMTools SNP 494574 494574 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C24%2C0:45 scaffold675 SAMTools SNP 494627 494627 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold675 SAMTools SNP 494895 494895 226 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold675 SAMTools SNP 495608 495608 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C11%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C4.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C217:99 scaffold675 SAMTools SNP 495818 495818 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold675 SAMTools SNP 495824 495824 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold675 SAMTools SNP 496121 496121 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold675 SAMTools SNP 496481 496481 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold675 SAMTools SNP 496529 496529 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold675 SAMTools SNP 496818 496818 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold675 SAMTools SNP 496940 496940 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C223:99 scaffold675 SAMTools SNP 496950 496950 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold675 SAMTools SNP 497099 497099 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold675 SAMTools SNP 497143 497143 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold675 SAMTools SNP 497513 497513 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C0.043%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C121:99 scaffold675 SAMTools SNP 497554 497554 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C8%2C32%2C0%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.0085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold675 SAMTools SNP 497922 497922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold675 SAMTools SNP 497930 497930 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C16%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.018%2C1%2C1%2C1.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold675 SAMTools SNP 498375 498375 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold675 SAMTools SNP 501711 501711 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C51%2C0:99 scaffold675 SAMTools SNP 501828 501828 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 502331 502331 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold675 SAMTools SNP 503218 503218 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold675 SAMTools SNP 503245 503245 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C0.047%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold676 SAMTools SNP 74920 74920 18.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold676 SAMTools SNP 84543 84543 110 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C42%2C0:81 scaffold676 SAMTools SNP 119579 119579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C27%2C2%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold676 SAMTools SNP 125392 125392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 126753 126753 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C0.1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 130626 130626 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C39%2C0:75 scaffold676 SAMTools SNP 132800 132800 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold676 SAMTools SNP 132962 132962 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold676 SAMTools SNP 133123 133123 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold676 SAMTools SNP 133458 133458 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 133463 133463 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 138563 138563 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold676 SAMTools SNP 138776 138776 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold676 SAMTools SNP 138813 138813 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0028%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 139178 139178 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold676 SAMTools SNP 140115 140115 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C18%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C0.28%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold676 SAMTools SNP 140466 140466 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold676 SAMTools SNP 143145 143145 50.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold676 SAMTools SNP 143541 143541 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C83:41 scaffold676 SAMTools SNP 145222 145222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C87%2C81%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 146278 146278 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold676 SAMTools SNP 146953 146953 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C23%2C2%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.67%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 146972 146972 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C6%3BMQ%3D46%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold676 SAMTools SNP 147034 147034 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C3%2C23%3BMQ%3D46%3BFQ%3D213%3BPV4%3D0.24%2C0.1%2C0.14%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold676 SAMTools SNP 147225 147225 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C25%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 148020 148020 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.12%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold676 SAMTools SNP 148270 148270 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 148840 148840 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.03%2C1%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold676 SAMTools SNP 150228 150228 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold676 SAMTools SNP 150241 150241 216 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold676 SAMTools SNP 150370 150370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold676 SAMTools SNP 150402 150402 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold676 SAMTools SNP 162577 162577 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold676 SAMTools SNP 162578 162578 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold676 SAMTools SNP 165775 165775 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold676 SAMTools SNP 165795 165795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold676 SAMTools SNP 166006 166006 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold676 SAMTools SNP 166833 166833 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C1%2C22%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-05%2C6.4e-07%2C1%2C6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 166854 166854 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C53%3BMQ%3D50%3BFQ%3D-161%3BPV4%3D0.13%2C0.48%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C134%2C0:99 scaffold676 SAMTools SNP 168597 168597 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold676 SAMTools SNP 169015 169015 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C56%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold676 SAMTools SNP 169387 169387 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold676 SAMTools SNP 170134 170134 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C48%2C0:72 scaffold676 SAMTools SNP 170224 170224 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C4%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C141%2C0:99 scaffold676 SAMTools SNP 170709 170709 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C67%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold676 SAMTools SNP 170735 170735 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C57%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold676 SAMTools SNP 172627 172627 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold676 SAMTools SNP 172995 172995 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.057%2C0.00014%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold676 SAMTools SNP 173013 173013 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.03%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold676 SAMTools SNP 174110 174110 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 174216 174216 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold676 SAMTools SNP 174536 174536 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold676 SAMTools SNP 174575 174575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C2%2C23%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.095%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 174582 174582 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C41%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175066 175066 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C46%2C14%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175482 175482 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C0%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C0.19%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175678 175678 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175711 175711 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175833 175833 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175848 175848 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175901 175901 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C66%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 175921 175921 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 176543 176543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 176860 176860 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D55%2C9%2C15%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.19%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold676 SAMTools SNP 177581 177581 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C65%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.59%2C1.9e-63%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold676 SAMTools SNP 178288 178288 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold676 SAMTools SNP 178391 178391 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold676 SAMTools SNP 178460 178460 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C34%2C10%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C4.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 178469 178469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 179512 179512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C21%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold676 SAMTools SNP 180193 180193 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00029%2C0.27%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 180325 180325 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold676 SAMTools SNP 181017 181017 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold676 SAMTools SNP 186842 186842 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 187083 187083 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold676 SAMTools SNP 187343 187343 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 187853 187853 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold676 SAMTools SNP 187860 187860 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold676 SAMTools SNP 187920 187920 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 189125 189125 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.035%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold676 SAMTools SNP 189129 189129 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold676 SAMTools SNP 190781 190781 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold676 SAMTools SNP 202526 202526 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 203663 203663 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C22%2C2%2C5%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold676 SAMTools SNP 203714 203714 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C29%2C4%2C9%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.22%2C1%2C1%2C1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold676 SAMTools SNP 203750 203750 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 205235 205235 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C2%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.22%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold676 SAMTools SNP 205262 205262 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.21%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold676 SAMTools SNP 206172 206172 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold676 SAMTools SNP 206204 206204 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.07%2C1%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold676 SAMTools SNP 206322 206322 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 208106 208106 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D17.1%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C44:47 scaffold676 SAMTools SNP 208188 208188 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D47%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold676 SAMTools SNP 208226 208226 220 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C5%3BMQ%3D48%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold676 SAMTools SNP 212610 212610 101 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C32%2C2%2C8%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold676 SAMTools SNP 212698 212698 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C14%2C0%2C16%3BMQ%3D50%3BFQ%3D164%3BPV4%3D2.2e-06%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold676 SAMTools SNP 214615 214615 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C6.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C212:70 scaffold676 SAMTools SNP 248528 248528 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 249143 249143 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 250140 250140 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.24%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C119:99 scaffold676 SAMTools SNP 252115 252115 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold676 SAMTools SNP 252118 252118 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C155:99 scaffold676 SAMTools SNP 257734 257734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 257771 257771 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold676 SAMTools SNP 258202 258202 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold676 SAMTools SNP 258713 258713 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold676 SAMTools SNP 258716 258716 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold676 SAMTools SNP 261140 261140 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C34%2C0%2C11%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.012%2C2.8e-16%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold676 SAMTools SNP 261152 261152 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C16%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.023%2C1.9e-05%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold676 SAMTools SNP 261167 261167 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C28%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.022%2C7.2e-06%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold676 SAMTools SNP 261432 261432 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.54%2C8.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold676 SAMTools SNP 265287 265287 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C39%2C0:75 scaffold676 SAMTools SNP 265486 265486 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.12%3BPV4%3D1%2C0.00041%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C29:32 scaffold676 SAMTools SNP 289720 289720 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 289768 289768 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 290498 290498 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 332773 332773 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold676 SAMTools SNP 332906 332906 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold676 SAMTools SNP 435458 435458 34.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold676 SAMTools SNP 438256 438256 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold676 SAMTools SNP 438259 438259 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.014%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold676 SAMTools SNP 438307 438307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C29%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 438797 438797 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C32%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1.9e-05%2C1.3e-09%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold676 SAMTools SNP 438977 438977 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.5%2C0.16%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C207:34 scaffold676 SAMTools SNP 439397 439397 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.027%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold676 SAMTools SNP 439448 439448 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold676 SAMTools SNP 442658 442658 8.44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold676 SAMTools SNP 443138 443138 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C1%2C40%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C5.3e-74%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold676 SAMTools SNP 443678 443678 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C88%2C1%2C82%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.49%2C4.8e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold676 SAMTools SNP 444840 444840 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C23%2C5%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0017%2C4.5e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold676 SAMTools SNP 444849 444849 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D6.2e-05%2C3.6e-08%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold676 SAMTools SNP 444868 444868 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C26%2C5%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0064%2C1%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold676 SAMTools SNP 448427 448427 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold676 SAMTools SNP 449434 449434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C80%2C48%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 450326 450326 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C48%2C28%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 450458 450458 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold676 SAMTools SNP 450467 450467 42.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C21%2C0:39 scaffold676 SAMTools SNP 450996 450996 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold676 SAMTools SNP 451113 451113 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.35%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C41:44 scaffold676 SAMTools SNP 451114 451114 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold676 SAMTools SNP 451877 451877 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold676 SAMTools SNP 452007 452007 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C12%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C199%2C0:99 scaffold676 SAMTools SNP 452288 452288 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C91%2C46%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 452360 452360 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 452381 452381 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 453252 453252 39.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold676 SAMTools SNP 454732 454732 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 454833 454833 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold676 SAMTools SNP 457027 457027 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C28%2C14%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 457048 457048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold676 SAMTools SNP 457679 457679 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold676 SAMTools SNP 458512 458512 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold676 SAMTools SNP 458515 458515 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 461078 461078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C10%2C91%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 461198 461198 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C67%2C0%2C33%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.097%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold676 SAMTools SNP 461630 461630 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C7%2C13%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold676 SAMTools SNP 461636 461636 186 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C8%2C55%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.043%2C5.4e-20%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold676 SAMTools SNP 462041 462041 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold676 SAMTools SNP 467029 467029 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C39%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold676 SAMTools SNP 477243 477243 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold676 SAMTools SNP 478220 478220 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C12%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold676 SAMTools SNP 481546 481546 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold676 SAMTools SNP 484506 484506 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 484519 484519 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold676 SAMTools SNP 484526 484526 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold676 SAMTools SNP 484780 484780 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C42%2C0%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D7e-05%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C3%2C0:6 scaffold676 SAMTools SNP 484797 484797 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold676 SAMTools SNP 484853 484853 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold676 SAMTools SNP 492763 492763 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold676 SAMTools SNP 492790 492790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold676 SAMTools SNP 492958 492958 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold676 SAMTools SNP 495922 495922 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 496558 496558 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C193:99 scaffold676 SAMTools SNP 496561 496561 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold676 SAMTools SNP 496567 496567 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.44%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C226:99 scaffold676 SAMTools SNP 497909 497909 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C6%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.074%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold676 SAMTools SNP 498059 498059 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold676 SAMTools SNP 498536 498536 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold676 SAMTools SNP 501526 501526 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold676 SAMTools SNP 502532 502532 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C51%2C0:99 scaffold676 SAMTools SNP 504508 504508 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold676 SAMTools SNP 504523 504523 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold676 SAMTools SNP 504602 504602 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold676 SAMTools SNP 504848 504848 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold676 SAMTools SNP 505123 505123 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C9%3BMQ%3D43%3BFQ%3D107%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C134:99 scaffold676 SAMTools SNP 505157 505157 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C1%3BMQ%3D44%3BFQ%3D77%3BPV4%3D0.038%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold676 SAMTools SNP 505183 505183 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D45%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C159:99 scaffold676 SAMTools SNP 532279 532279 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold676 SAMTools SNP 555664 555664 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold676 SAMTools SNP 585043 585043 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 585093 585093 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 594371 594371 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold676 SAMTools SNP 594419 594419 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.022%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold676 SAMTools SNP 594438 594438 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold676 SAMTools SNP 594448 594448 28.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold676 SAMTools SNP 594471 594471 54.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold676 SAMTools SNP 612715 612715 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold676 SAMTools SNP 612720 612720 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold676 SAMTools SNP 617808 617808 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0059%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold676 SAMTools SNP 622169 622169 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold676 SAMTools SNP 664734 664734 4.11 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold678 SAMTools SNP 13815 13815 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold678 SAMTools SNP 29049 29049 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold678 SAMTools SNP 29088 29088 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 29553 29553 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C252%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 29781 29781 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C54%2C0:99 scaffold678 SAMTools SNP 29904 29904 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C6%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold678 SAMTools SNP 30183 30183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 31638 31638 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.57%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold678 SAMTools SNP 31714 31714 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold678 SAMTools SNP 34358 34358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C66%2C9%3BMQ%3D50%3BFQ%3D-206%3BPV4%3D1%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C179%2C0:99 scaffold678 SAMTools SNP 34391 34391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold678 SAMTools SNP 34829 34829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C6%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 34868 34868 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C5.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C232:90 scaffold678 SAMTools SNP 36789 36789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold678 SAMTools SNP 36798 36798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold678 SAMTools SNP 36810 36810 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold678 SAMTools SNP 39395 39395 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold678 SAMTools SNP 40135 40135 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.64%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold678 SAMTools SNP 42041 42041 80.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold678 SAMTools SNP 45235 45235 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C32%2C10%2C0%3BMQ%3D46%3BFQ%3D28%3BPV4%3D0.00022%2C1.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold678 SAMTools SNP 45378 45378 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C27%2C107%2C22%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 46641 46641 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 47591 47591 145 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold678 SAMTools SNP 47620 47620 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold678 SAMTools SNP 47867 47867 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C69%2C0:99 scaffold678 SAMTools SNP 52405 52405 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 125796 125796 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 127289 127289 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.62%2C0.3%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold678 SAMTools SNP 127872 127872 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C3%2C5%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C238:99 scaffold678 SAMTools SNP 128005 128005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C19%2C16%2C13%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.81%2C0.38%2C0.15%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 128313 128313 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C8%3BMQ%3D46%3BFQ%3D147%3BPV4%3D0.12%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold678 SAMTools SNP 128574 128574 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold678 SAMTools SNP 130811 130811 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C24%2C17%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 131459 131459 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold678 SAMTools SNP 132876 132876 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold678 SAMTools SNP 132946 132946 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold678 SAMTools SNP 143459 143459 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold678 SAMTools SNP 152615 152615 145 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C36%2C0:69 scaffold678 SAMTools SNP 153107 153107 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold678 SAMTools SNP 158281 158281 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 158303 158303 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 175717 175717 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 176659 176659 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold678 SAMTools SNP 176991 176991 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 177004 177004 202 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D42%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C42%2C0:81 scaffold678 SAMTools SNP 179461 179461 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1.9e-06%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C157:41 scaffold678 SAMTools SNP 180109 180109 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D42%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C51%2C0:99 scaffold678 SAMTools SNP 180191 180191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D45%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold678 SAMTools SNP 182776 182776 129 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C27%2C0:51 scaffold678 SAMTools SNP 183562 183562 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 188555 188555 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold678 SAMTools SNP 188732 188732 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C254:99 scaffold678 SAMTools SNP 188783 188783 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.08%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C202:99 scaffold678 SAMTools SNP 188800 188800 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C173:99 scaffold678 SAMTools SNP 189573 189573 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.6%2C5.1e-22%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold678 SAMTools SNP 189631 189631 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold678 SAMTools SNP 197788 197788 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C3%2C9%3BMQ%3D45%3BFQ%3D218%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold678 SAMTools SNP 198864 198864 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C13%3BMQ%3D21%3BFQ%3D6.2%3BPV4%3D0.41%2C1%2C0.044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold678 SAMTools SNP 199115 199115 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C6.9e-05%2C1%2C7.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C193:99 scaffold678 SAMTools SNP 199245 199245 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C3.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C244:67 scaffold678 SAMTools SNP 199602 199602 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C14%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.72%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold678 SAMTools SNP 201171 201171 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 201237 201237 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.082%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold678 SAMTools SNP 201515 201515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C16%2C65%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 201864 201864 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold678 SAMTools SNP 201912 201912 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C13%2C46%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0096%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 201962 201962 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C33%2C0:63 scaffold678 SAMTools SNP 202058 202058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 202939 202939 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 203223 203223 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 204463 204463 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 207882 207882 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold678 SAMTools SNP 208113 208113 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C12%2C21%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00014%2C5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold678 SAMTools SNP 208916 208916 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C26%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.013%2C7.5e-41%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold678 SAMTools SNP 208973 208973 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 208989 208989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C22%2C9%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 210847 210847 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C6.6e-05%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C85:30 scaffold678 SAMTools SNP 211325 211325 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold678 SAMTools SNP 211672 211672 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C69:72 scaffold678 SAMTools SNP 213644 213644 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.1%3BPV4%3D1%2C6.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C29:32 scaffold678 SAMTools SNP 216936 216936 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.061%2C6.4e-06%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold678 SAMTools SNP 218271 218271 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold678 SAMTools SNP 219849 219849 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold678 SAMTools SNP 234572 234572 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold678 SAMTools SNP 235015 235015 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold678 SAMTools SNP 235388 235388 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 236609 236609 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 236831 236831 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 236952 236952 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold678 SAMTools SNP 239963 239963 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 259597 259597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold678 SAMTools SNP 259621 259621 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C0%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 260725 260725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold678 SAMTools SNP 260792 260792 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C5%3BMQ%3D48%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold678 SAMTools SNP 260858 260858 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C7%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold678 SAMTools SNP 260903 260903 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C46%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 260937 260937 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold678 SAMTools SNP 261060 261060 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 261376 261376 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C38:41 scaffold678 SAMTools SNP 271620 271620 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold678 SAMTools SNP 288088 288088 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C24%2C5%3BMQ%3D30%3BFQ%3D17.1%3BPV4%3D1%2C0.28%2C0.025%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C44:47 scaffold678 SAMTools SNP 288642 288642 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold678 SAMTools SNP 289017 289017 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.59%2C0.16%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C183:99 scaffold678 SAMTools SNP 291706 291706 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C13%2C68%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.017%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 293308 293308 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C47%2C0%2C9%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.34%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold678 SAMTools SNP 293814 293814 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold678 SAMTools SNP 293894 293894 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C4%2C7%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.14%2C5.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold678 SAMTools SNP 294329 294329 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold678 SAMTools SNP 296022 296022 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C45%2C0:87 scaffold678 SAMTools SNP 296085 296085 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold678 SAMTools SNP 296262 296262 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold678 SAMTools SNP 296316 296316 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.048%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 298270 298270 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C14%3BMQ%3D45%3BFQ%3D219%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold678 SAMTools SNP 300486 300486 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold678 SAMTools SNP 301191 301191 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold678 SAMTools SNP 301242 301242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold678 SAMTools SNP 303094 303094 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold678 SAMTools SNP 303665 303665 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C153:99 scaffold678 SAMTools SNP 303692 303692 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold678 SAMTools SNP 303701 303701 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold678 SAMTools SNP 303836 303836 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold678 SAMTools SNP 303869 303869 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold678 SAMTools SNP 304537 304537 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold678 SAMTools SNP 304851 304851 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold678 SAMTools SNP 305045 305045 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 305757 305757 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold678 SAMTools SNP 306562 306562 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 313079 313079 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 313100 313100 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 313262 313262 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold678 SAMTools SNP 313354 313354 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 313507 313507 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 313552 313552 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 317826 317826 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C33%2C39%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.86%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 318453 318453 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold678 SAMTools SNP 321434 321434 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C262%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 321458 321458 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C16%2C123%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 322598 322598 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C76%2C17%3BMQ%3D50%3BFQ%3D-277%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold678 SAMTools SNP 322688 322688 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C60%2C3%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.074%2C0.052%2C1%2C8.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold678 SAMTools SNP 322897 322897 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C58%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 323176 323176 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C36%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 323875 323875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C20%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 324831 324831 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C33%2C52%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 326393 326393 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C54%2C28%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0031%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 328355 328355 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold678 SAMTools SNP 328388 328388 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 329321 329321 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 329373 329373 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C15%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C135%2C0:99 scaffold678 SAMTools SNP 329466 329466 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C17%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0062%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 329525 329525 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold678 SAMTools SNP 330319 330319 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold678 SAMTools SNP 331422 331422 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold678 SAMTools SNP 332083 332083 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C4%2C4%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold678 SAMTools SNP 332168 332168 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C234:99 scaffold678 SAMTools SNP 332348 332348 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.089%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold678 SAMTools SNP 332359 332359 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.27%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold678 SAMTools SNP 332434 332434 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C0%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C141%2C0:99 scaffold678 SAMTools SNP 332559 332559 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold678 SAMTools SNP 336405 336405 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold678 SAMTools SNP 337594 337594 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold678 SAMTools SNP 337748 337748 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C154:77 scaffold678 SAMTools SNP 338011 338011 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold678 SAMTools SNP 338059 338059 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold678 SAMTools SNP 344049 344049 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold678 SAMTools SNP 344087 344087 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold678 SAMTools SNP 345391 345391 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold678 SAMTools SNP 348480 348480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 352872 352872 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold678 SAMTools SNP 353551 353551 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold678 SAMTools SNP 354671 354671 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 382941 382941 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.018%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold678 SAMTools SNP 383386 383386 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 394294 394294 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 396339 396339 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 396608 396608 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.0019%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C221:99 scaffold678 SAMTools SNP 396982 396982 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.52%2C0.12%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold678 SAMTools SNP 400344 400344 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C62%2C11%3BMQ%3D50%3BFQ%3D-122%3BPV4%3D0.0052%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C95%2C0:99 scaffold678 SAMTools SNP 400346 400346 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C21%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.016%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold678 SAMTools SNP 400468 400468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C65%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold678 SAMTools SNP 401957 401957 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold678 SAMTools SNP 402363 402363 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C8%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold678 SAMTools SNP 402365 402365 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0095%2C0.27%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold678 SAMTools SNP 404196 404196 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.28%2C0.2%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold678 SAMTools SNP 404199 404199 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.28%2C0.49%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold678 SAMTools SNP 404250 404250 31.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold678 SAMTools SNP 406898 406898 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold678 SAMTools SNP 406961 406961 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00071%2C0.16%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 407551 407551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 408708 408708 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C37%2C34%2C14%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C4.2e-74%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold678 SAMTools SNP 410384 410384 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 410839 410839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C52%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.38%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 410875 410875 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold678 SAMTools SNP 410896 410896 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold678 SAMTools SNP 410911 410911 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.35%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C243:99 scaffold678 SAMTools SNP 410914 410914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold678 SAMTools SNP 413431 413431 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.33%2C0.0012%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C82:53 scaffold678 SAMTools SNP 413904 413904 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold678 SAMTools SNP 413916 413916 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0096%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold678 SAMTools SNP 413935 413935 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 413953 413953 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C112:99 scaffold678 SAMTools SNP 413968 413968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C3%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold678 SAMTools SNP 413986 413986 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C40%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.052%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 415736 415736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 415895 415895 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.3%2C0.085%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold678 SAMTools SNP 416363 416363 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.24%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold678 SAMTools SNP 416848 416848 76.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C15%2C0:27 scaffold678 SAMTools SNP 416863 416863 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold678 SAMTools SNP 416886 416886 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold678 SAMTools SNP 417210 417210 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C2%2C12%2C0%3BMQ%3D48%3BFQ%3D72%3BPV4%3D1%2C0.38%2C1%2C2.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold678 SAMTools SNP 417249 417249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C10%2C29%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 417595 417595 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C68%2C7%2C34%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 417619 417619 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C50%2C7%2C103%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.058%2C0.33%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 417926 417926 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1.6e-05%2C0.47%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold678 SAMTools SNP 417955 417955 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C39%2C22%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00014%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold678 SAMTools SNP 418229 418229 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C0%2C9%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold678 SAMTools SNP 418364 418364 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.092%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold678 SAMTools SNP 418721 418721 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C12%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold678 SAMTools SNP 419076 419076 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold678 SAMTools SNP 419573 419573 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C42%2C26%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 419636 419636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0097%2C0.37%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 419953 419953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C47%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold678 SAMTools SNP 422418 422418 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C18%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 424046 424046 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C0%2C11%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold678 SAMTools SNP 424080 424080 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold678 SAMTools SNP 424652 424652 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C24%2C0:45 scaffold678 SAMTools SNP 425320 425320 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold678 SAMTools SNP 426415 426415 69.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold678 SAMTools SNP 427152 427152 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold678 SAMTools SNP 427166 427166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold678 SAMTools SNP 427858 427858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C5%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold678 SAMTools SNP 428434 428434 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.041%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold678 SAMTools SNP 430994 430994 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold678 SAMTools SNP 439790 439790 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 451052 451052 16.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold678 SAMTools SNP 456061 456061 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 456521 456521 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold678 SAMTools SNP 456542 456542 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.2e-09%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C202:39 scaffold678 SAMTools SNP 456670 456670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 457154 457154 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold678 SAMTools SNP 457178 457178 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 457367 457367 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold678 SAMTools SNP 462294 462294 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C201:28 scaffold678 SAMTools SNP 463843 463843 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold678 SAMTools SNP 463860 463860 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00054%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold678 SAMTools SNP 463891 463891 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold678 SAMTools SNP 464387 464387 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.41%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C190:91 scaffold678 SAMTools SNP 464474 464474 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold678 SAMTools SNP 464888 464888 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold678 SAMTools SNP 464913 464913 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.2%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold678 SAMTools SNP 465999 465999 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold678 SAMTools SNP 466751 466751 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold678 SAMTools SNP 473014 473014 132 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C21%2C0:39 scaffold678 SAMTools SNP 482252 482252 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold678 SAMTools SNP 488855 488855 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold678 SAMTools SNP 488894 488894 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold678 SAMTools SNP 526188 526188 122 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold678 SAMTools SNP 526423 526423 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.038%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold678 SAMTools SNP 526465 526465 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold678 SAMTools SNP 526477 526477 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold678 SAMTools SNP 526847 526847 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.45%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold678 SAMTools SNP 528928 528928 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C51%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 529622 529622 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C4%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold678 SAMTools SNP 529661 529661 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C68%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 529969 529969 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 531448 531448 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 533098 533098 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 533904 533904 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold678 SAMTools SNP 533916 533916 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 534375 534375 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold678 SAMTools SNP 534423 534423 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.01%2C0.32%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C174:99 scaffold678 SAMTools SNP 534441 534441 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold678 SAMTools SNP 534444 534444 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold678 SAMTools SNP 534608 534608 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C62%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1.7e-10%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C132:99 scaffold678 SAMTools SNP 534779 534779 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold678 SAMTools SNP 534830 534830 187 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C11%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D6.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold678 SAMTools SNP 535242 535242 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold678 SAMTools SNP 535257 535257 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C245:99 scaffold678 SAMTools SNP 535272 535272 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D28%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.56%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold678 SAMTools SNP 535323 535323 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C1%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.67%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold678 SAMTools SNP 535338 535338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C43%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold678 SAMTools SNP 536419 536419 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C17%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 537024 537024 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.0052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold678 SAMTools SNP 537277 537277 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold678 SAMTools SNP 537283 537283 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold678 SAMTools SNP 537415 537415 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 537428 537428 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold678 SAMTools SNP 537599 537599 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold678 SAMTools SNP 537620 537620 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.27%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold678 SAMTools SNP 537653 537653 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.58%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold678 SAMTools SNP 537947 537947 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold678 SAMTools SNP 538055 538055 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold678 SAMTools SNP 538405 538405 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold678 SAMTools SNP 538464 538464 220 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.13%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C238:99 scaffold678 SAMTools SNP 538799 538799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 538832 538832 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C61%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 539976 539976 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.45%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold678 SAMTools SNP 541074 541074 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C34%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 541482 541482 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C156:99 scaffold678 SAMTools SNP 541551 541551 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 541578 541578 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold678 SAMTools SNP 544316 544316 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold678 SAMTools SNP 548352 548352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C30%3BMQ%3D38%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold678 SAMTools SNP 550314 550314 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 550371 550371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold678 SAMTools SNP 550380 550380 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C1%2C41%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 550844 550844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 551119 551119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 556159 556159 41.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold678 SAMTools SNP 558551 558551 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 561542 561542 9.51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D10%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C78%2C0:60 scaffold678 SAMTools SNP 561564 561564 6.29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D17%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C5%2C0:5 scaffold678 SAMTools SNP 637227 637227 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold678 SAMTools SNP 655455 655455 4.75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold678 SAMTools SNP 656420 656420 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 656463 656463 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 669446 669446 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.082%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold678 SAMTools SNP 669876 669876 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C7.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C248:87 scaffold678 SAMTools SNP 670095 670095 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.14%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold678 SAMTools SNP 673604 673604 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold678 SAMTools SNP 673694 673694 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold678 SAMTools SNP 689772 689772 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold678 SAMTools SNP 690076 690076 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold678 SAMTools SNP 692206 692206 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold678 SAMTools SNP 692212 692212 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold678 SAMTools SNP 692246 692246 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold678 SAMTools SNP 693760 693760 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 703879 703879 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C594%3BMQ%3D46%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.33%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 705265 705265 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C7%2C0%2C299%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.026%2C1%2C1%2C4.6e-12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 715389 715389 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C30%2C0:57 scaffold678 SAMTools SNP 733441 733441 4.61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold678 SAMTools SNP 744451 744451 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 745446 745446 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C74:31 scaffold678 SAMTools SNP 745636 745636 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold678 SAMTools SNP 747095 747095 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C8%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold678 SAMTools SNP 748778 748778 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold678 SAMTools SNP 769874 769874 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 775669 775669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold678 SAMTools SNP 775749 775749 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold678 SAMTools SNP 779363 779363 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold678 SAMTools SNP 779811 779811 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold678 SAMTools SNP 780003 780003 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold678 SAMTools SNP 781190 781190 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 781244 781244 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold678 SAMTools SNP 782736 782736 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.37%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold678 SAMTools SNP 782803 782803 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold678 SAMTools SNP 817388 817388 17.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C30%2C27%2C47%2C0%2C44:6 scaffold678 SAMTools SNP 817561 817561 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 822079 822079 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold678 SAMTools SNP 844625 844625 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 844632 844632 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold678 SAMTools SNP 846757 846757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 846793 846793 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C25%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold678 SAMTools SNP 847119 847119 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold678 SAMTools SNP 848216 848216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold678 SAMTools SNP 852486 852486 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 853656 853656 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C41:39 scaffold678 SAMTools SNP 854248 854248 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C38:41 scaffold678 SAMTools SNP 854499 854499 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.58%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C254:40 scaffold678 SAMTools SNP 854586 854586 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C36%2C0%2C8%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold678 SAMTools SNP 855633 855633 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold678 SAMTools SNP 856023 856023 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold678 SAMTools SNP 856032 856032 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.26%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold678 SAMTools SNP 856362 856362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 856556 856556 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 856646 856646 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 857270 857270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C99%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 858095 858095 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 858353 858353 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold678 SAMTools SNP 862013 862013 67.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold678 SAMTools SNP 862922 862922 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C36%2C55%2C16%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.095%2C6.6e-82%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold678 SAMTools SNP 870554 870554 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold678 SAMTools SNP 873975 873975 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold678 SAMTools SNP 873992 873992 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold678 SAMTools SNP 874952 874952 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.047%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C177:57 scaffold678 SAMTools SNP 874964 874964 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C0.00057;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C174:99 scaffold678 SAMTools SNP 875782 875782 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold678 SAMTools SNP 875798 875798 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0088%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0059%2C4.6e-05%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold678 SAMTools SNP 877203 877203 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold678 SAMTools SNP 877353 877353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C44%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold678 SAMTools SNP 877540 877540 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 878008 878008 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold678 SAMTools SNP 878026 878026 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 878088 878088 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold678 SAMTools SNP 878110 878110 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold678 SAMTools SNP 879425 879425 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C132:99 scaffold678 SAMTools SNP 880095 880095 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 880146 880146 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 880366 880366 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 881366 881366 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.25%2C1%2C1%2C9.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C167:99 scaffold678 SAMTools SNP 881389 881389 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C36%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.074%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold678 SAMTools SNP 883215 883215 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C41%2C90%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 883660 883660 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C19%2C21%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 884436 884436 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C84%2C35%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 884466 884466 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C172%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 884514 884514 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C37%2C13%2C6%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.8%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold678 SAMTools SNP 884526 884526 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C107%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 885387 885387 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C4%2C107%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.48%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 885435 885435 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C67%2C36%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.017%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 885436 885436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C68%2C33%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1.7e-06%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 885901 885901 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C71%2C16%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C8.8e-05%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 887894 887894 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C25%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 890738 890738 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D993%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D730%2C1%2C232%2C30%3BMQ%3D50%3BFQ%3D209%3BPV4%3D2.9e-17%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold678 SAMTools SNP 890778 890778 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1447%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D504%2C37%2C898%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-10%2C3.9e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 891379 891379 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1471%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1381%2C58%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 891781 891781 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C126%2C27%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 892137 892137 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C122%2C44%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 892174 892174 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D239%2C54%2C205%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C1.5e-64%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 892192 892192 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C431%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 892575 892575 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C111%2C3%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 892596 892596 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C21%3BMQ%3D50%3BFQ%3D-65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C38%2C0:73 scaffold678 SAMTools SNP 892599 892599 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold678 SAMTools SNP 892641 892641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1667%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C806%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 892694 892694 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2154%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1404%2C166%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 895254 895254 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1239%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C598%2C549%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold678 SAMTools SNP 931410 931410 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold678 SAMTools SNP 931448 931448 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold678 SAMTools SNP 1005167 1005167 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold678 SAMTools SNP 1005183 1005183 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold678 SAMTools SNP 1005328 1005328 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 1006648 1006648 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 1065891 1065891 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C24%2C0:45 scaffold678 SAMTools SNP 1067976 1067976 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold678 SAMTools SNP 1068039 1068039 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C31%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold678 SAMTools SNP 1068075 1068075 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C29%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold678 SAMTools SNP 1073733 1073733 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C0.0021%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold678 SAMTools SNP 1073744 1073744 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C212:99 scaffold678 SAMTools SNP 1073774 1073774 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold678 SAMTools SNP 1074367 1074367 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C14%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.026%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C68:71 scaffold678 SAMTools SNP 1074373 1074373 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold678 SAMTools SNP 1074493 1074493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold678 SAMTools SNP 1074511 1074511 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.0022%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold678 SAMTools SNP 1077478 1077478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold678 SAMTools SNP 1077607 1077607 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C81%2C0:99 scaffold678 SAMTools SNP 1078224 1078224 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold678 SAMTools SNP 1078251 1078251 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold678 SAMTools SNP 1078272 1078272 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold678 SAMTools SNP 1081025 1081025 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C4.3e-05%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold678 SAMTools SNP 1081426 1081426 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold678 SAMTools SNP 1081462 1081462 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 1081489 1081489 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold678 SAMTools SNP 1081900 1081900 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 1081928 1081928 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold678 SAMTools SNP 1081940 1081940 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold678 SAMTools SNP 1084247 1084247 18.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold678 SAMTools SNP 1084253 1084253 176 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C33%2C0:63 scaffold678 SAMTools SNP 1084366 1084366 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold678 SAMTools SNP 1084461 1084461 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold678 SAMTools SNP 1084907 1084907 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C17%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.5e-29%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C94:63 scaffold678 SAMTools SNP 1085069 1085069 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C9.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C250:42 scaffold678 SAMTools SNP 1085195 1085195 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C255%2C0:99 scaffold678 SAMTools SNP 1085306 1085306 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C45%2C9%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.26%2C2.9e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold678 SAMTools SNP 1085521 1085521 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C11%2C31%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.00034%2C4.9e-59%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold678 SAMTools SNP 1088278 1088278 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold678 SAMTools SNP 1088381 1088381 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C75%2C0:99 scaffold678 SAMTools SNP 1104682 1104682 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold678 SAMTools SNP 1126406 1126406 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C74:72 scaffold678 SAMTools SNP 1128682 1128682 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold678 SAMTools SNP 1128733 1128733 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold678 SAMTools SNP 1130346 1130346 189 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.34%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold678 SAMTools SNP 1130439 1130439 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C1%3BMQ%3D42%3BFQ%3D174%3BPV4%3D1%2C0.04%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold678 SAMTools SNP 1141793 1141793 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold678 SAMTools SNP 1142153 1142153 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold678 SAMTools SNP 1142170 1142170 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C20:23 scaffold678 SAMTools SNP 1142886 1142886 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.00012%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C23:26 scaffold678 SAMTools SNP 1142922 1142922 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold678 SAMTools SNP 1143402 1143402 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold678 SAMTools SNP 1144749 1144749 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold678 SAMTools SNP 1145495 1145495 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C43%2C20%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.71%2C6.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C137:99 scaffold678 SAMTools SNP 1145558 1145558 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C64%2C0%2C12%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold678 SAMTools SNP 1145730 1145730 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C32%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold678 SAMTools SNP 1145796 1145796 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold678 SAMTools SNP 1146120 1146120 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C1%3BMQ%3D49%3BFQ%3D61%3BPV4%3D0.21%2C1%2C0.025%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C211:91 scaffold678 SAMTools SNP 1146178 1146178 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C32%2C2%2C17%3BMQ%3D49%3BFQ%3D220%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold678 SAMTools SNP 1147496 1147496 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C16%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.49%2C0.34%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold678 SAMTools SNP 1147546 1147546 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold678 SAMTools SNP 1147616 1147616 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold678 SAMTools SNP 1147622 1147622 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold678 SAMTools SNP 1148140 1148140 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C159:40 scaffold678 SAMTools SNP 1168115 1168115 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C24%2C0:45 scaffold678 SAMTools SNP 1168878 1168878 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold678 SAMTools SNP 1169409 1169409 14.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold678 SAMTools SNP 1169866 1169866 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C15%2C0:27 scaffold678 SAMTools SNP 1169919 1169919 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold678 SAMTools SNP 1170439 1170439 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C0%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold678 SAMTools SNP 1170477 1170477 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold678 SAMTools SNP 1170653 1170653 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold678 SAMTools SNP 1171199 1171199 65.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold680 SAMTools SNP 49792 49792 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold680 SAMTools SNP 50130 50130 21.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold680 SAMTools SNP 50151 50151 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1.4e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C190:69 scaffold680 SAMTools SNP 55719 55719 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold680 SAMTools SNP 57734 57734 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold680 SAMTools SNP 57779 57779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 62824 62824 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 62832 62832 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 63076 63076 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 63302 63302 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold680 SAMTools SNP 63333 63333 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold680 SAMTools SNP 63554 63554 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold680 SAMTools SNP 64334 64334 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 64385 64385 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 65233 65233 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold680 SAMTools SNP 65447 65447 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold680 SAMTools SNP 65463 65463 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold681 SAMTools SNP 39658 39658 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold681 SAMTools SNP 40553 40553 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C15%2C21%2C14%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.36%2C1.5e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold681 SAMTools SNP 41429 41429 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold681 SAMTools SNP 41712 41712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold681 SAMTools SNP 41770 41770 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 42626 42626 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C1%2C9%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold681 SAMTools SNP 45079 45079 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold681 SAMTools SNP 45089 45089 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold681 SAMTools SNP 45095 45095 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold681 SAMTools SNP 52333 52333 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 61609 61609 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold681 SAMTools SNP 69737 69737 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold681 SAMTools SNP 69758 69758 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C0%2C22%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.5%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold681 SAMTools SNP 70115 70115 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold681 SAMTools SNP 70172 70172 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C0%2C19%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1.2e-05%2C1%2C1%2C2.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold681 SAMTools SNP 70523 70523 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C24%2C80%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 72120 72120 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C80%2C12%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 72604 72604 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.34%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold681 SAMTools SNP 73010 73010 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C20%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold681 SAMTools SNP 73657 73657 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold681 SAMTools SNP 73666 73666 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold681 SAMTools SNP 73695 73695 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.37%2C0.0044%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold681 SAMTools SNP 73735 73735 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C10%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold681 SAMTools SNP 81095 81095 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold681 SAMTools SNP 81125 81125 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.42%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold681 SAMTools SNP 84786 84786 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold681 SAMTools SNP 85237 85237 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold681 SAMTools SNP 85259 85259 43 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold681 SAMTools SNP 86370 86370 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 86588 86588 156 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.057%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C169:99 scaffold681 SAMTools SNP 86951 86951 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C6%2C28%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 86953 86953 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 87053 87053 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 87062 87062 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.13%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C232:74 scaffold681 SAMTools SNP 87527 87527 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C0%2C20%3BMQ%3D50%3BFQ%3D133%3BPV4%3D6.3e-09%2C2.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold681 SAMTools SNP 87530 87530 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C14%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 87557 87557 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C69%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 88021 88021 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C36%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold681 SAMTools SNP 88030 88030 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C40%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold681 SAMTools SNP 88051 88051 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 88258 88258 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C45%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 88689 88689 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C31%2C13%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 89246 89246 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C31%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 89508 89508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C40%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold681 SAMTools SNP 89604 89604 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D233%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C34%2C57%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 89804 89804 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C28%2C59%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 90057 90057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D256%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C104%2C49%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.38%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 90078 90078 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C30%2C52%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 90243 90243 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C21%2C30%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.025%2C0.41%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold681 SAMTools SNP 90258 90258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold681 SAMTools SNP 90324 90324 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C288%2C54%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 105724 105724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D748%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D341%2C7%2C391%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 105775 105775 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D743%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C30%2C0:57 scaffold681 SAMTools SNP 106096 106096 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3695%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1720%2C1814%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 106127 106127 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5826%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C3%2C814%2C3065%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.11%2C1.9e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C255%2C0:99 scaffold681 SAMTools SNP 106629 106629 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2774%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C671%2C1140%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D0.37%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 106650 106650 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2714%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D965%2C476%2C578%2C181%3BMQ%3D48%3BFQ%3D225%3BPV4%3D6.5e-06%2C1%2C1%2C1.1e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 107475 107475 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3656%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D694%2C1167%2C778%2C888%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.6e-08%2C6e-310%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 109563 109563 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D376%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C298%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 109569 109569 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D415%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C83%2C295%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold681 SAMTools SNP 109590 109590 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C242%2C53%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D3.3e-25%2C1%2C1%2C9.3e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold681 SAMTools SNP 109986 109986 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D321%2C35%2C421%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold681 SAMTools SNP 110885 110885 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D27%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C10%2C0:17 scaffold681 SAMTools SNP 110919 110919 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold681 SAMTools SNP 110964 110964 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold681 SAMTools SNP 110982 110982 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold681 SAMTools SNP 112542 112542 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold681 SAMTools SNP 113171 113171 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold681 SAMTools SNP 113430 113430 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold681 SAMTools SNP 115712 115712 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.28%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold681 SAMTools SNP 116958 116958 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00028%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold681 SAMTools SNP 118188 118188 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold681 SAMTools SNP 118296 118296 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C5%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C236:99 scaffold681 SAMTools SNP 118710 118710 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0047%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C195:99 scaffold681 SAMTools SNP 118722 118722 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0047%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C186:99 scaffold681 SAMTools SNP 118734 118734 138 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-43;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C87%2C71%2C168%2C0%2C162:29 scaffold681 SAMTools SNP 126552 126552 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold681 SAMTools SNP 165369 165369 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 175530 175530 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 176595 176595 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold681 SAMTools SNP 176607 176607 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 176711 176711 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold681 SAMTools SNP 179020 179020 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0065%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold681 SAMTools SNP 188213 188213 99.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold681 SAMTools SNP 210909 210909 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold681 SAMTools SNP 211283 211283 40.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold681 SAMTools SNP 221151 221151 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 231694 231694 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C30%2C0:57 scaffold681 SAMTools SNP 247104 247104 58.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold681 SAMTools SNP 269483 269483 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold681 SAMTools SNP 286928 286928 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 287292 287292 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold681 SAMTools SNP 288416 288416 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold681 SAMTools SNP 372325 372325 36.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold681 SAMTools SNP 372376 372376 32.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold681 SAMTools SNP 382672 382672 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold681 SAMTools SNP 394891 394891 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold682 SAMTools SNP 14970 14970 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold682 SAMTools SNP 15281 15281 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.14%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C224:99 scaffold682 SAMTools SNP 15295 15295 208 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C214:99 scaffold682 SAMTools SNP 16215 16215 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold682 SAMTools SNP 16218 16218 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold682 SAMTools SNP 17205 17205 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0063%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold682 SAMTools SNP 23694 23694 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold682 SAMTools SNP 25585 25585 22.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold682 SAMTools SNP 25660 25660 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold682 SAMTools SNP 30968 30968 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold682 SAMTools SNP 31237 31237 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold682 SAMTools SNP 32062 32062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold682 SAMTools SNP 32119 32119 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C84%2C0:99 scaffold682 SAMTools SNP 32131 32131 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold682 SAMTools SNP 32290 32290 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold682 SAMTools SNP 32299 32299 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold682 SAMTools SNP 33195 33195 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold682 SAMTools SNP 34671 34671 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold682 SAMTools SNP 34710 34710 216 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold682 SAMTools SNP 36696 36696 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C246:96 scaffold682 SAMTools SNP 37145 37145 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold682 SAMTools SNP 37187 37187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold682 SAMTools SNP 37519 37519 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold682 SAMTools SNP 37854 37854 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold682 SAMTools SNP 38206 38206 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C168:31 scaffold682 SAMTools SNP 39484 39484 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold682 SAMTools SNP 39495 39495 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.13%2C0.0011%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C228:40 scaffold682 SAMTools SNP 42354 42354 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C54%2C1%2C13%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0036%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold682 SAMTools SNP 42378 42378 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.00054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold682 SAMTools SNP 42705 42705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C7%2C29%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold682 SAMTools SNP 43055 43055 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C78%2C0:99 scaffold682 SAMTools SNP 43999 43999 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C44%2C8%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.024%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold682 SAMTools SNP 44569 44569 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold682 SAMTools SNP 45479 45479 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C7%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold682 SAMTools SNP 46443 46443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C65%3BMQ%3D46%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold682 SAMTools SNP 46902 46902 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C91%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold682 SAMTools SNP 47736 47736 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold682 SAMTools SNP 48082 48082 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C9%2C108%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D4.4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold682 SAMTools SNP 48102 48102 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C50%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold682 SAMTools SNP 49321 49321 54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C60%2C0:99 scaffold682 SAMTools SNP 81169 81169 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold683 SAMTools SNP 5252 5252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 5378 5378 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 8870 8870 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold683 SAMTools SNP 8971 8971 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold683 SAMTools SNP 9039 9039 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold683 SAMTools SNP 9569 9569 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 9906 9906 57 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold683 SAMTools SNP 46429 46429 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold683 SAMTools SNP 46434 46434 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold683 SAMTools SNP 47924 47924 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold683 SAMTools SNP 48257 48257 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold683 SAMTools SNP 49716 49716 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold683 SAMTools SNP 50239 50239 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.59%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C183:99 scaffold683 SAMTools SNP 50252 50252 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C0.09%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold683 SAMTools SNP 50544 50544 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold683 SAMTools SNP 54427 54427 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C245:99 scaffold683 SAMTools SNP 54486 54486 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 71456 71456 33.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold683 SAMTools SNP 72648 72648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 72691 72691 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 73328 73328 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 74090 74090 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 76073 76073 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 76102 76102 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 76565 76565 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold683 SAMTools SNP 77951 77951 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 78586 78586 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 78645 78645 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold683 SAMTools SNP 80190 80190 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold683 SAMTools SNP 80747 80747 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0034%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold683 SAMTools SNP 80755 80755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D0.38%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold683 SAMTools SNP 80760 80760 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.063%2C1%2C1%2C3.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold683 SAMTools SNP 80786 80786 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C9%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.002%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold683 SAMTools SNP 86386 86386 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.053%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 86426 86426 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C13%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 87734 87734 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold683 SAMTools SNP 87749 87749 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 87776 87776 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold683 SAMTools SNP 88271 88271 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold683 SAMTools SNP 90202 90202 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.044%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C213:72 scaffold683 SAMTools SNP 102757 102757 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 108669 108669 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold683 SAMTools SNP 108775 108775 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0281%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold683 SAMTools SNP 109532 109532 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold683 SAMTools SNP 110447 110447 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C20%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1.5e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold683 SAMTools SNP 111124 111124 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold683 SAMTools SNP 121594 121594 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold683 SAMTools SNP 121895 121895 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold683 SAMTools SNP 122102 122102 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold683 SAMTools SNP 123310 123310 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C0.16%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 123311 123311 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C66%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00084%2C0.19%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 123346 123346 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.41%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 123381 123381 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold683 SAMTools SNP 123690 123690 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.21%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold683 SAMTools SNP 123821 123821 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C16%2C8%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.5%2C1.3e-30%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold683 SAMTools SNP 123864 123864 17.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold683 SAMTools SNP 125147 125147 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D100%2C11%2C63%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 125160 125160 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold683 SAMTools SNP 128138 128138 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold683 SAMTools SNP 169284 169284 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.007%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C244:99 scaffold683 SAMTools SNP 169948 169948 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold683 SAMTools SNP 171789 171789 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold683 SAMTools SNP 173282 173282 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C24%2C0:45 scaffold683 SAMTools SNP 175746 175746 192 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C96%2C15%2C65%3BMQ%3D49%3BFQ%3D195%3BPV4%3D0.22%2C4.1e-72%2C0.21%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold683 SAMTools SNP 180699 180699 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold683 SAMTools SNP 180934 180934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C29%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold683 SAMTools SNP 180961 180961 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C41%2C2%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.014%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold683 SAMTools SNP 180970 180970 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C47%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold683 SAMTools SNP 186175 186175 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 186195 186195 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 186259 186259 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C6%2C24%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C4e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 189697 189697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C11%2C2%3BMQ%3D49%3BFQ%3D189%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold683 SAMTools SNP 189742 189742 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold683 SAMTools SNP 189743 189743 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold683 SAMTools SNP 189750 189750 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold683 SAMTools SNP 193206 193206 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold683 SAMTools SNP 195147 195147 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C5.6e-10%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold683 SAMTools SNP 195198 195198 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C24%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold683 SAMTools SNP 195920 195920 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.067%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C61:64 scaffold683 SAMTools SNP 195921 195921 45.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold683 SAMTools SNP 197144 197144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold683 SAMTools SNP 197309 197309 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.09%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold683 SAMTools SNP 197369 197369 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C36%2C3%2C23%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C5.8e-67%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold683 SAMTools SNP 197780 197780 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold683 SAMTools SNP 197918 197918 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold683 SAMTools SNP 197954 197954 16.6 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold683 SAMTools SNP 209230 209230 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold683 SAMTools SNP 261105 261105 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold683 SAMTools SNP 261114 261114 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold683 SAMTools SNP 261407 261407 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold685 SAMTools SNP 5749 5749 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold685 SAMTools SNP 5935 5935 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold685 SAMTools SNP 7089 7089 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold685 SAMTools SNP 7780 7780 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold685 SAMTools SNP 9594 9594 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold685 SAMTools SNP 10872 10872 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold685 SAMTools SNP 12109 12109 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.001%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C85:39 scaffold685 SAMTools SNP 13683 13683 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C11%2C36%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.38%2C4.3e-10%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold685 SAMTools SNP 13696 13696 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D47%2C26%2C35%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D7.2e-06%2C3.5e-19%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold685 SAMTools SNP 13710 13710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold685 SAMTools SNP 14438 14438 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C88%2C5%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 14456 14456 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C83%2C4%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 14832 14832 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C149%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold685 SAMTools SNP 15489 15489 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C95%2C2%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 15534 15534 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C82%2C20%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 16003 16003 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold685 SAMTools SNP 16355 16355 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C15%2C1%2C14%3BMQ%3D50%3BFQ%3D190%3BPV4%3D4.4e-05%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold685 SAMTools SNP 16385 16385 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C11%2C11%2C8%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0032%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold685 SAMTools SNP 16403 16403 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C8%2C11%2C5%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold685 SAMTools SNP 16967 16967 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C114%2C0:99 scaffold685 SAMTools SNP 18258 18258 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold685 SAMTools SNP 18261 18261 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold685 SAMTools SNP 18312 18312 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold685 SAMTools SNP 18492 18492 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold685 SAMTools SNP 18514 18514 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D1%2C0.47%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C227:28 scaffold685 SAMTools SNP 23570 23570 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.48%2C0.22%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold685 SAMTools SNP 23693 23693 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold685 SAMTools SNP 25152 25152 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C23%2C23%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.092%2C1%2C0.31%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 25194 25194 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C65%2C16%2C42%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold685 SAMTools SNP 25691 25691 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold685 SAMTools SNP 26819 26819 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C8%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.0019%2C0.07%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold685 SAMTools SNP 27775 27775 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C56%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold685 SAMTools SNP 29641 29641 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C15%3BMQ%3D45%3BFQ%3D55%3BPV4%3D1%2C0.13%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C82:85 scaffold685 SAMTools SNP 49030 49030 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold685 SAMTools SNP 54535 54535 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold685 SAMTools SNP 54951 54951 14.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold685 SAMTools SNP 55148 55148 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold686 SAMTools SNP 438 438 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold686 SAMTools SNP 3132 3132 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C22%2C8%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold686 SAMTools SNP 6965 6965 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold686 SAMTools SNP 6988 6988 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold686 SAMTools SNP 8908 8908 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C54%2C0:99 scaffold686 SAMTools SNP 9139 9139 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C35%2C20%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D0.54%2C2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C51%2C0:99 scaffold686 SAMTools SNP 9439 9439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C15%3BMQ%3D45%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold686 SAMTools SNP 9457 9457 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C36%3BMQ%3D47%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold686 SAMTools SNP 82780 82780 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C78:78 scaffold686 SAMTools SNP 83185 83185 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold686 SAMTools SNP 83507 83507 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold686 SAMTools SNP 83936 83936 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold686 SAMTools SNP 92360 92360 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold686 SAMTools SNP 96678 96678 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold686 SAMTools SNP 96753 96753 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold686 SAMTools SNP 96860 96860 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold686 SAMTools SNP 98256 98256 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold686 SAMTools SNP 98489 98489 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold686 SAMTools SNP 98528 98528 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold686 SAMTools SNP 98563 98563 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold686 SAMTools SNP 98809 98809 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 348 348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 469 469 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 480 480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 1026 1026 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold689 SAMTools SNP 5421 5421 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.15%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold689 SAMTools SNP 6762 6762 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.25%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold689 SAMTools SNP 6808 6808 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.51%2C0.18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold689 SAMTools SNP 7045 7045 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold689 SAMTools SNP 14616 14616 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold689 SAMTools SNP 16019 16019 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold689 SAMTools SNP 24824 24824 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold689 SAMTools SNP 24868 24868 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold689 SAMTools SNP 25136 25136 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold689 SAMTools SNP 49948 49948 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold689 SAMTools SNP 52202 52202 17.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold689 SAMTools SNP 53838 53838 3.56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.503%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-8.86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C19:25 scaffold689 SAMTools SNP 53862 53862 15.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold689 SAMTools SNP 121768 121768 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 153935 153935 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold689 SAMTools SNP 153944 153944 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C92%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold689 SAMTools SNP 154312 154312 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C34%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold689 SAMTools SNP 154472 154472 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C82%2C2%2C31%3BMQ%3D49%3BFQ%3D60%3BPV4%3D0.51%2C0.00011%2C0.088%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold689 SAMTools SNP 154475 154475 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C99%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold689 SAMTools SNP 156652 156652 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C48%2C0:82 scaffold689 SAMTools SNP 156827 156827 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold689 SAMTools SNP 157143 157143 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.51%2C0.37%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold689 SAMTools SNP 157188 157188 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold689 SAMTools SNP 158068 158068 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C237:99 scaffold689 SAMTools SNP 159530 159530 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold689 SAMTools SNP 159532 159532 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold689 SAMTools SNP 159749 159749 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold689 SAMTools SNP 160956 160956 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.3%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold689 SAMTools SNP 160991 160991 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C177:31 scaffold689 SAMTools SNP 160993 160993 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold689 SAMTools SNP 161417 161417 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.6e-16%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C243:46 scaffold689 SAMTools SNP 162856 162856 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C13%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold689 SAMTools SNP 162859 162859 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.27%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold689 SAMTools SNP 163565 163565 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold689 SAMTools SNP 163774 163774 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C13%2C9%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold689 SAMTools SNP 164125 164125 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.00087%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold689 SAMTools SNP 164153 164153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold689 SAMTools SNP 164401 164401 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold689 SAMTools SNP 164683 164683 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold689 SAMTools SNP 164893 164893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold689 SAMTools SNP 165228 165228 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold689 SAMTools SNP 165331 165331 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold689 SAMTools SNP 165487 165487 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold689 SAMTools SNP 165514 165514 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold689 SAMTools SNP 165526 165526 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold689 SAMTools SNP 165751 165751 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold689 SAMTools SNP 165775 165775 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C18%2C0:33 scaffold689 SAMTools SNP 165790 165790 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 165955 165955 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold689 SAMTools SNP 166075 166075 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold689 SAMTools SNP 166702 166702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold689 SAMTools SNP 166969 166969 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold689 SAMTools SNP 170277 170277 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.25%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold689 SAMTools SNP 170292 170292 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold689 SAMTools SNP 170307 170307 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold689 SAMTools SNP 170655 170655 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold689 SAMTools SNP 170852 170852 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold689 SAMTools SNP 171141 171141 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold689 SAMTools SNP 171186 171186 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 172108 172108 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold689 SAMTools SNP 172670 172670 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold689 SAMTools SNP 172672 172672 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold689 SAMTools SNP 173268 173268 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold689 SAMTools SNP 173318 173318 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.28%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold689 SAMTools SNP 173554 173554 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.51%2C0.023%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold689 SAMTools SNP 173605 173605 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold689 SAMTools SNP 180799 180799 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C7.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C244:74 scaffold689 SAMTools SNP 181180 181180 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C75%2C0:99 scaffold689 SAMTools SNP 181216 181216 22.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C21%2C0:36 scaffold689 SAMTools SNP 181734 181734 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C48%2C0:93 scaffold689 SAMTools SNP 181801 181801 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 181858 181858 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold689 SAMTools SNP 200739 200739 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold689 SAMTools SNP 200853 200853 72.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C15%2C0:27 scaffold689 SAMTools SNP 200931 200931 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D-54%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold689 SAMTools SNP 210538 210538 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 289860 289860 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C7%2C0%3BMQ%3D47%3BFQ%3D17.1%3BPV4%3D1%2C0.058%2C0.35%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C201:47 scaffold689 SAMTools SNP 289880 289880 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C0%3BMQ%3D47%3BFQ%3D32%3BPV4%3D1%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C114:62 scaffold689 SAMTools SNP 314536 314536 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold689 SAMTools SNP 318628 318628 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold689 SAMTools SNP 321686 321686 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold689 SAMTools SNP 333399 333399 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold689 SAMTools SNP 334322 334322 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold689 SAMTools SNP 336388 336388 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 336469 336469 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold689 SAMTools SNP 336639 336639 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 337365 337365 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold689 SAMTools SNP 337389 337389 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold689 SAMTools SNP 338251 338251 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold689 SAMTools SNP 338254 338254 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold689 SAMTools SNP 339483 339483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 340296 340296 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold689 SAMTools SNP 342348 342348 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold689 SAMTools SNP 345204 345204 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold689 SAMTools SNP 368140 368140 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold689 SAMTools SNP 368565 368565 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold689 SAMTools SNP 368775 368775 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold689 SAMTools SNP 368841 368841 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.04%3BPV4%3D1%2C4.5e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C32:35 scaffold689 SAMTools SNP 375048 375048 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold689 SAMTools SNP 376254 376254 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold689 SAMTools SNP 392779 392779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold694 SAMTools SNP 8703 8703 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 8831 8831 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 8846 8846 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 30206 30206 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 30221 30221 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 30425 30425 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 38910 38910 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold694 SAMTools SNP 40338 40338 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C217:99 scaffold694 SAMTools SNP 54984 54984 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 55009 55009 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 59262 59262 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold694 SAMTools SNP 61694 61694 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold694 SAMTools SNP 69145 69145 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 77816 77816 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C30%2C0:57 scaffold694 SAMTools SNP 78878 78878 28.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold694 SAMTools SNP 79024 79024 40.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold694 SAMTools SNP 79105 79105 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold694 SAMTools SNP 84215 84215 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold694 SAMTools SNP 115751 115751 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold694 SAMTools SNP 126811 126811 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold694 SAMTools SNP 126846 126846 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.46%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold694 SAMTools SNP 127326 127326 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C238:99 scaffold694 SAMTools SNP 127329 127329 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold694 SAMTools SNP 127333 127333 182 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold694 SAMTools SNP 127452 127452 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.079%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold694 SAMTools SNP 127980 127980 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C23%2C2%2C15%3BMQ%3D50%3BFQ%3D138%3BPV4%3D2.5e-06%2C1%2C1%2C6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold694 SAMTools SNP 128707 128707 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C147%2C8%2C13%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold694 SAMTools SNP 129181 129181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C60%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold694 SAMTools SNP 129207 129207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C12%2C33%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.014%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold694 SAMTools SNP 129225 129225 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold694 SAMTools SNP 131157 131157 222 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0%2C241%2C10%2C238:87 scaffold694 SAMTools SNP 131199 131199 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold694 SAMTools SNP 133280 133280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold694 SAMTools SNP 133303 133303 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold694 SAMTools SNP 133331 133331 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C3%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C9.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold694 SAMTools SNP 133397 133397 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold694 SAMTools SNP 134126 134126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold694 SAMTools SNP 145816 145816 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold694 SAMTools SNP 146275 146275 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold694 SAMTools SNP 147086 147086 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold694 SAMTools SNP 147100 147100 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold694 SAMTools SNP 148164 148164 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold694 SAMTools SNP 148190 148190 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8e-05%2C0.4%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold694 SAMTools SNP 149404 149404 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C48:75 scaffold694 SAMTools SNP 149446 149446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold694 SAMTools SNP 151107 151107 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 151496 151496 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold694 SAMTools SNP 151505 151505 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold694 SAMTools SNP 151574 151574 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold694 SAMTools SNP 151604 151604 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold694 SAMTools SNP 152027 152027 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold694 SAMTools SNP 152036 152036 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold694 SAMTools SNP 152372 152372 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 158404 158404 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 158462 158462 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold694 SAMTools SNP 158659 158659 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 162399 162399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold694 SAMTools SNP 162413 162413 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold694 SAMTools SNP 171468 171468 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 171763 171763 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold694 SAMTools SNP 173433 173433 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold694 SAMTools SNP 174166 174166 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 182273 182273 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D0.29%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C34:37 scaffold694 SAMTools SNP 186045 186045 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 186768 186768 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold694 SAMTools SNP 186786 186786 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 186804 186804 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold694 SAMTools SNP 188139 188139 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold694 SAMTools SNP 188158 188158 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold694 SAMTools SNP 188413 188413 63.8 . . REF=T;ALT=A,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C47%2C41%2C94%2C0%2C91:10 scaffold694 SAMTools SNP 188431 188431 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold694 SAMTools SNP 188443 188443 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold694 SAMTools SNP 189947 189947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold694 SAMTools SNP 190001 190001 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold694 SAMTools SNP 190385 190385 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold694 SAMTools SNP 190416 190416 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold694 SAMTools SNP 190917 190917 197 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C30%2C0%2C210%2C0%2C207:57 scaffold694 SAMTools SNP 191402 191402 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold694 SAMTools SNP 191420 191420 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold694 SAMTools SNP 191482 191482 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold694 SAMTools SNP 191699 191699 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.0026%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold694 SAMTools SNP 193020 193020 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C0.38%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold694 SAMTools SNP 193059 193059 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C5%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C210:99 scaffold694 SAMTools SNP 193080 193080 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold695 SAMTools SNP 5548 5548 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 5549 5549 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 5687 5687 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 40677 40677 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold695 SAMTools SNP 44910 44910 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold695 SAMTools SNP 84725 84725 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold695 SAMTools SNP 103930 103930 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold695 SAMTools SNP 107013 107013 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 107031 107031 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold695 SAMTools SNP 107092 107092 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 108459 108459 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 108846 108846 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C0.049%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold695 SAMTools SNP 108883 108883 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C27%2C0:51 scaffold695 SAMTools SNP 109698 109698 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold695 SAMTools SNP 109734 109734 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold695 SAMTools SNP 110246 110246 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 110695 110695 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 110866 110866 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold695 SAMTools SNP 110875 110875 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 112433 112433 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 112466 112466 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 117022 117022 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold695 SAMTools SNP 117405 117405 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 117608 117608 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C5%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.011%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold695 SAMTools SNP 117626 117626 156 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C21%2C16%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.00045%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold695 SAMTools SNP 118710 118710 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.053%2C1%2C8.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold695 SAMTools SNP 119276 119276 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 119360 119360 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C43%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold695 SAMTools SNP 120735 120735 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C52%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 120750 120750 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C6%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 120804 120804 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C30%2C7%2C13%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold695 SAMTools SNP 120921 120921 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C36%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold695 SAMTools SNP 120948 120948 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 120969 120969 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C26%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 121260 121260 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C26%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold695 SAMTools SNP 121301 121301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C54%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold695 SAMTools SNP 121637 121637 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold695 SAMTools SNP 121658 121658 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.64%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold695 SAMTools SNP 122139 122139 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold695 SAMTools SNP 122154 122154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0085%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 122172 122172 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C29%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.0049%2C2.7e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold695 SAMTools SNP 122676 122676 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C9%2C37%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 123255 123255 205 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C5%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold695 SAMTools SNP 123806 123806 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold695 SAMTools SNP 123809 123809 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.31%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold695 SAMTools SNP 123866 123866 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold695 SAMTools SNP 124197 124197 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold695 SAMTools SNP 124198 124198 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 124662 124662 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.57%2C0.094%2C1%2C0.00068;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold695 SAMTools SNP 127119 127119 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold695 SAMTools SNP 127378 127378 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold695 SAMTools SNP 127384 127384 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold695 SAMTools SNP 127396 127396 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold695 SAMTools SNP 127873 127873 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C8%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold695 SAMTools SNP 127906 127906 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C21%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold695 SAMTools SNP 127919 127919 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 129076 129076 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C18%2C0:33 scaffold695 SAMTools SNP 129094 129094 46.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold695 SAMTools SNP 129160 129160 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold695 SAMTools SNP 130232 130232 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 130244 130244 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 130331 130331 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold695 SAMTools SNP 130352 130352 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold695 SAMTools SNP 130636 130636 57.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold695 SAMTools SNP 130754 130754 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold695 SAMTools SNP 135439 135439 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D153%2C14%2C59%2C13%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.043%2C4.6e-128%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold695 SAMTools SNP 136309 136309 4.77 . . REF=N;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C27%2C24%2C33%2C0%2C30:3 scaffold695 SAMTools SNP 136990 136990 117 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D356%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C141%2C3%2C89%3BMQ%3D50%3BFQ%3D120%3BPV4%3D8e-16%2C2.3e-83%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold695 SAMTools SNP 141301 141301 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C56%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C175%2C0:99 scaffold695 SAMTools SNP 141808 141808 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D19%2C30%2C6%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0061%2C0.15%2C1%2C8.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold695 SAMTools SNP 141832 141832 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C108%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 142668 142668 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C162%2C9%2C37%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.04%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold695 SAMTools SNP 143091 143091 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C177%2C7%2C97%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.0024%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 143118 143118 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 143449 143449 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.39%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C253:99 scaffold695 SAMTools SNP 143455 143455 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C237:99 scaffold695 SAMTools SNP 143482 143482 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 143527 143527 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 143565 143565 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C0%2C107%2C2%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C42%2C0:81 scaffold695 SAMTools SNP 144479 144479 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 145161 145161 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C8%2C94%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 149589 149589 37.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold695 SAMTools SNP 150355 150355 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C169%2C84%2C152%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C7.4e-20%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 155030 155030 22.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold695 SAMTools SNP 156165 156165 9.08 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold695 SAMTools SNP 158468 158468 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold695 SAMTools SNP 171725 171725 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D11%2C4%2C40%2C24%3BMQ%3D30%3BFQ%3D-3.53%3BPV4%3D0.55%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C26:29 scaffold695 SAMTools SNP 171786 171786 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D29%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C81%2C0:99 scaffold695 SAMTools SNP 173179 173179 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C215:99 scaffold695 SAMTools SNP 173550 173550 9.49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold695 SAMTools SNP 174087 174087 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C36%2C0:69 scaffold695 SAMTools SNP 174723 174723 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold695 SAMTools SNP 176700 176700 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C6%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.69%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold695 SAMTools SNP 176715 176715 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold695 SAMTools SNP 176754 176754 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C17%2C1%2C6%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.11%2C2.1e-06%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold695 SAMTools SNP 180908 180908 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.13%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C100:49 scaffold695 SAMTools SNP 180923 180923 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold695 SAMTools SNP 180956 180956 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.28%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold695 SAMTools SNP 182637 182637 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold695 SAMTools SNP 190133 190133 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C36%2C0:69 scaffold695 SAMTools SNP 190746 190746 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D118%3BPV4%3D3.8e-07%2C0.14%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold695 SAMTools SNP 191272 191272 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C15%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.25%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C142:99 scaffold695 SAMTools SNP 191308 191308 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold695 SAMTools SNP 191505 191505 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold695 SAMTools SNP 191508 191508 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold695 SAMTools SNP 191533 191533 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold695 SAMTools SNP 192020 192020 179 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.002%2C0.017%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold695 SAMTools SNP 192410 192410 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C52%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 192762 192762 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C28%2C4%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.73%2C1%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold695 SAMTools SNP 192774 192774 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C3%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C8.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold695 SAMTools SNP 193452 193452 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold695 SAMTools SNP 193482 193482 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 193500 193500 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold695 SAMTools SNP 193577 193577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold695 SAMTools SNP 194882 194882 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 194993 194993 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C186:56 scaffold695 SAMTools SNP 207596 207596 15.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold695 SAMTools SNP 208389 208389 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 208449 208449 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 213393 213393 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold695 SAMTools SNP 246420 246420 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold695 SAMTools SNP 246452 246452 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 247110 247110 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C29:32 scaffold695 SAMTools SNP 254319 254319 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 254340 254340 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold695 SAMTools SNP 254368 254368 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75.2%3BPV4%3D1%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C110:99 scaffold695 SAMTools SNP 254702 254702 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C74:77 scaffold695 SAMTools SNP 254796 254796 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold695 SAMTools SNP 261735 261735 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold695 SAMTools SNP 262011 262011 7.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold695 SAMTools SNP 267119 267119 45.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold695 SAMTools SNP 271028 271028 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold695 SAMTools SNP 271268 271268 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 271652 271652 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold695 SAMTools SNP 273558 273558 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 273615 273615 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 274659 274659 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold695 SAMTools SNP 274787 274787 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold695 SAMTools SNP 274805 274805 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold695 SAMTools SNP 274841 274841 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 276128 276128 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold695 SAMTools SNP 287911 287911 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 287984 287984 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 289680 289680 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold695 SAMTools SNP 290930 290930 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold695 SAMTools SNP 293139 293139 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C7.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C129:65 scaffold695 SAMTools SNP 293671 293671 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 293672 293672 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold695 SAMTools SNP 293714 293714 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.047%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C239:99 scaffold695 SAMTools SNP 295768 295768 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.009%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold695 SAMTools SNP 295851 295851 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.62%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold695 SAMTools SNP 296581 296581 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 296842 296842 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 296994 296994 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C141:99 scaffold695 SAMTools SNP 297000 297000 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.47%2C0.15%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C221:99 scaffold695 SAMTools SNP 297015 297015 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C162:99 scaffold695 SAMTools SNP 297024 297024 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold695 SAMTools SNP 300445 300445 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold695 SAMTools SNP 301532 301532 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C9.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C245:99 scaffold695 SAMTools SNP 301589 301589 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C17%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.00072%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold695 SAMTools SNP 301743 301743 79 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.02%2C0.16%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold695 SAMTools SNP 301767 301767 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold695 SAMTools SNP 301778 301778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold695 SAMTools SNP 302093 302093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 302709 302709 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C1%2C13%3BMQ%3D49%3BFQ%3D186%3BPV4%3D0.38%2C0.4%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C248:99 scaffold695 SAMTools SNP 303354 303354 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C4%3BMQ%3D47%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C237:54 scaffold695 SAMTools SNP 303356 303356 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D43%3BFQ%3D14.2%3BPV4%3D0.53%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C208:43 scaffold695 SAMTools SNP 303374 303374 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold695 SAMTools SNP 303562 303562 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold695 SAMTools SNP 303565 303565 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold695 SAMTools SNP 303577 303577 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C4%3BMQ%3D41%3BFQ%3D37%3BPV4%3D0.036%2C1%2C0.0075%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C210:67 scaffold695 SAMTools SNP 304396 304396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C0%2C62%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0065%2C7.9e-14%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 304411 304411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0012%2C0.16%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold695 SAMTools SNP 305185 305185 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C70%2C6%2C84%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 305252 305252 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.00081;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold695 SAMTools SNP 307058 307058 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.46%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C171:37 scaffold695 SAMTools SNP 308338 308338 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 308499 308499 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 308527 308527 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold695 SAMTools SNP 308956 308956 221 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.061%2C0.017%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C204:99 scaffold695 SAMTools SNP 308977 308977 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.11%2C0.055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C205:57 scaffold695 SAMTools SNP 311000 311000 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold695 SAMTools SNP 313642 313642 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold695 SAMTools SNP 314088 314088 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold695 SAMTools SNP 314107 314107 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 314119 314119 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 314320 314320 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 314338 314338 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 314698 314698 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold695 SAMTools SNP 315141 315141 49.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold695 SAMTools SNP 316344 316344 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold695 SAMTools SNP 317724 317724 34.8 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold695 SAMTools SNP 319087 319087 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold695 SAMTools SNP 319494 319494 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C9%2C5%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.0026%2C5.8e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C195:99 scaffold695 SAMTools SNP 319500 319500 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1.2e-06%2C1.6e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C235:99 scaffold695 SAMTools SNP 323395 323395 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C8.8e-05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C229:57 scaffold695 SAMTools SNP 324211 324211 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold695 SAMTools SNP 324727 324727 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C12%3BMQ%3D43%3BFQ%3D-48%3BPV4%3D1%2C0.17%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold695 SAMTools SNP 325092 325092 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C160:72 scaffold695 SAMTools SNP 325194 325194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold695 SAMTools SNP 325980 325980 175 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold695 SAMTools SNP 326041 326041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C0.35%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C145:99 scaffold695 SAMTools SNP 326386 326386 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.056%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold695 SAMTools SNP 326731 326731 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold695 SAMTools SNP 327227 327227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold695 SAMTools SNP 327655 327655 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold695 SAMTools SNP 328051 328051 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.039%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold695 SAMTools SNP 328461 328461 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 328854 328854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold695 SAMTools SNP 328880 328880 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold695 SAMTools SNP 328984 328984 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold695 SAMTools SNP 329343 329343 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0061%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold695 SAMTools SNP 329620 329620 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold695 SAMTools SNP 329650 329650 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold695 SAMTools SNP 329734 329734 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold695 SAMTools SNP 329915 329915 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 331255 331255 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 331273 331273 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 331315 331315 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 331321 331321 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold695 SAMTools SNP 331585 331585 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.018%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold695 SAMTools SNP 331913 331913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold695 SAMTools SNP 331961 331961 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold695 SAMTools SNP 333878 333878 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.026%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold695 SAMTools SNP 333884 333884 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.026%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold695 SAMTools SNP 334167 334167 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold695 SAMTools SNP 334179 334179 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold695 SAMTools SNP 334251 334251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C22%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold695 SAMTools SNP 334506 334506 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 334570 334570 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold695 SAMTools SNP 335092 335092 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold695 SAMTools SNP 335159 335159 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold695 SAMTools SNP 335477 335477 33.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C21%2C0:39 scaffold695 SAMTools SNP 335511 335511 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold695 SAMTools SNP 335862 335862 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold695 SAMTools SNP 337090 337090 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold695 SAMTools SNP 337353 337353 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C248:99 scaffold695 SAMTools SNP 337434 337434 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C224:99 scaffold695 SAMTools SNP 365686 365686 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 365715 365715 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 380172 380172 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold695 SAMTools SNP 380177 380177 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold695 SAMTools SNP 381873 381873 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold695 SAMTools SNP 381925 381925 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold695 SAMTools SNP 382536 382536 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 382542 382542 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold695 SAMTools SNP 384875 384875 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold695 SAMTools SNP 385085 385085 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold695 SAMTools SNP 385127 385127 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold695 SAMTools SNP 385495 385495 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold695 SAMTools SNP 385535 385535 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 385556 385556 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 385975 385975 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold695 SAMTools SNP 387791 387791 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 388727 388727 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C48%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold695 SAMTools SNP 388756 388756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 389008 389008 101 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.00064%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C74:77 scaffold695 SAMTools SNP 410310 410310 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold695 SAMTools SNP 416053 416053 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold695 SAMTools SNP 427395 427395 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold695 SAMTools SNP 427401 427401 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold695 SAMTools SNP 428430 428430 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 430844 430844 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.45%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold695 SAMTools SNP 430862 430862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold695 SAMTools SNP 430871 430871 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.21%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C165:99 scaffold695 SAMTools SNP 431568 431568 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.35%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold695 SAMTools SNP 432608 432608 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 432632 432632 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.0063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 435276 435276 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C8.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold695 SAMTools SNP 436931 436931 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold695 SAMTools SNP 436974 436974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold695 SAMTools SNP 437007 437007 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C52%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold695 SAMTools SNP 437480 437480 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C18%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.63%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold695 SAMTools SNP 437975 437975 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C28%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold695 SAMTools SNP 438605 438605 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C71%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 445453 445453 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold695 SAMTools SNP 453575 453575 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C39%2C0:75 scaffold695 SAMTools SNP 453777 453777 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C42%2C168%2C17%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1.8e-17%2C7.8e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold695 SAMTools SNP 455427 455427 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C230:28 scaffold695 SAMTools SNP 455438 455438 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C245:99 scaffold695 SAMTools SNP 460766 460766 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C10%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 461038 461038 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold695 SAMTools SNP 461089 461089 203 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C19%2C9%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.052%2C2.2e-09%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold695 SAMTools SNP 461177 461177 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C96%2C0:99 scaffold695 SAMTools SNP 463610 463610 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold695 SAMTools SNP 470959 470959 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C1%2C24%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C7.8e-57%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C247:49 scaffold695 SAMTools SNP 472342 472342 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C61%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold695 SAMTools SNP 472599 472599 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold695 SAMTools SNP 473018 473018 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C13%2C27%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.017%2C2e-06%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold695 SAMTools SNP 473031 473031 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.14%2C4.5e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold695 SAMTools SNP 473135 473135 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C1%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold695 SAMTools SNP 474024 474024 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C19%2C19%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.037%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 476746 476746 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold695 SAMTools SNP 476818 476818 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold695 SAMTools SNP 476863 476863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold695 SAMTools SNP 477127 477127 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D38%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold695 SAMTools SNP 477172 477172 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 479670 479670 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 479679 479679 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C49%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold695 SAMTools SNP 480036 480036 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.037%2C0.085%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold695 SAMTools SNP 480046 480046 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C9%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.2%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold695 SAMTools SNP 480061 480061 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold695 SAMTools SNP 480094 480094 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 486486 486486 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C18%2C0:33 scaffold695 SAMTools SNP 486708 486708 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold695 SAMTools SNP 486738 486738 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold695 SAMTools SNP 487084 487084 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C57%2C0:99 scaffold695 SAMTools SNP 487110 487110 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold695 SAMTools SNP 494674 494674 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.044%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold695 SAMTools SNP 494683 494683 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold695 SAMTools SNP 494725 494725 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold695 SAMTools SNP 494758 494758 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C102%2C0:99 scaffold695 SAMTools SNP 495040 495040 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C12%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C187%2C0:99 scaffold695 SAMTools SNP 507613 507613 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 507665 507665 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 534921 534921 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold695 SAMTools SNP 535171 535171 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold695 SAMTools SNP 535183 535183 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 535192 535192 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold695 SAMTools SNP 535225 535225 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold695 SAMTools SNP 535386 535386 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold695 SAMTools SNP 535455 535455 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold695 SAMTools SNP 535903 535903 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold695 SAMTools SNP 536023 536023 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold695 SAMTools SNP 536435 536435 47.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold695 SAMTools SNP 536442 536442 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold695 SAMTools SNP 536690 536690 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.0044%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold695 SAMTools SNP 537052 537052 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold695 SAMTools SNP 537303 537303 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.011%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold695 SAMTools SNP 537925 537925 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold695 SAMTools SNP 538873 538873 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold695 SAMTools SNP 539281 539281 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.14%2C6.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C156:41 scaffold695 SAMTools SNP 539362 539362 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.14%2C7.3e-07%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C136:91 scaffold695 SAMTools SNP 540137 540137 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C9.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold695 SAMTools SNP 540293 540293 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold695 SAMTools SNP 540491 540491 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold695 SAMTools SNP 540536 540536 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold695 SAMTools SNP 541028 541028 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.59%2C3e-09%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold695 SAMTools SNP 541539 541539 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.0013%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C121:99 scaffold695 SAMTools SNP 542016 542016 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold695 SAMTools SNP 542229 542229 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold695 SAMTools SNP 543600 543600 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold695 SAMTools SNP 544257 544257 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.016%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold695 SAMTools SNP 544639 544639 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C3.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C219:47 scaffold695 SAMTools SNP 544846 544846 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold695 SAMTools SNP 545280 545280 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold695 SAMTools SNP 545295 545295 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold695 SAMTools SNP 588994 588994 66.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C15%2C0:27 scaffold695 SAMTools SNP 592252 592252 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C6.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold695 SAMTools SNP 593629 593629 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C218:99 scaffold695 SAMTools SNP 593644 593644 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold695 SAMTools SNP 593737 593737 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C29%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.00025%2C1%2C1%2C2.1e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C240:99 scaffold695 SAMTools SNP 593776 593776 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C34%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold695 SAMTools SNP 594352 594352 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.22%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold695 SAMTools SNP 594384 594384 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold695 SAMTools SNP 595178 595178 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C23%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C205:99 scaffold695 SAMTools SNP 595181 595181 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.36%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C247:99 scaffold695 SAMTools SNP 595199 595199 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C235:99 scaffold695 SAMTools SNP 595226 595226 146 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold695 SAMTools SNP 595256 595256 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 595268 595268 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold695 SAMTools SNP 596526 596526 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold695 SAMTools SNP 596712 596712 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold695 SAMTools SNP 596733 596733 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.19%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold695 SAMTools SNP 596792 596792 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.15%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 596934 596934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold695 SAMTools SNP 597026 597026 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold695 SAMTools SNP 597185 597185 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold695 SAMTools SNP 597254 597254 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.26%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold695 SAMTools SNP 597371 597371 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C8%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0099%2C9.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold695 SAMTools SNP 597891 597891 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C61%2C12%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3.8e-108%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold695 SAMTools SNP 598022 598022 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C8%2C58%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.1%2C6.4e-81%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C182:99 scaffold695 SAMTools SNP 598496 598496 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold695 SAMTools SNP 598858 598858 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C51%2C0:99 scaffold695 SAMTools SNP 598873 598873 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C33%2C0:63 scaffold695 SAMTools SNP 599841 599841 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold695 SAMTools SNP 601708 601708 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold695 SAMTools SNP 602865 602865 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.067%2C0.19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C190:85 scaffold695 SAMTools SNP 603199 603199 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 604067 604067 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 604792 604792 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 607335 607335 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold695 SAMTools SNP 616624 616624 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 617044 617044 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 622134 622134 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 622415 622415 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold695 SAMTools SNP 626589 626589 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 626590 626590 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 627258 627258 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold695 SAMTools SNP 628439 628439 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold695 SAMTools SNP 628497 628497 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C21:24 scaffold695 SAMTools SNP 628535 628535 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C121:99 scaffold695 SAMTools SNP 629114 629114 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C74:77 scaffold695 SAMTools SNP 629198 629198 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 629464 629464 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 629758 629758 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold695 SAMTools SNP 629788 629788 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold695 SAMTools SNP 630214 630214 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C234:99 scaffold695 SAMTools SNP 630241 630241 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C18%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C7.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C233:99 scaffold695 SAMTools SNP 630298 630298 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.32%2C0.086%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold695 SAMTools SNP 630331 630331 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C16%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold695 SAMTools SNP 631330 631330 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0.27%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold695 SAMTools SNP 632314 632314 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C6%3BMQ%3D47%3BFQ%3D38%3BPV4%3D1%2C5.7e-09%2C0.16%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold695 SAMTools SNP 632803 632803 132 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C8%3BMQ%3D46%3BFQ%3D135%3BPV4%3D0.48%2C1%2C0.21%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold695 SAMTools SNP 632809 632809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C9%3BMQ%3D47%3BFQ%3D90%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C117:99 scaffold695 SAMTools SNP 633191 633191 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold695 SAMTools SNP 637739 637739 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C5%2C116%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.11%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 638777 638777 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C67%2C38%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3e-06%2C1%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 639097 639097 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C39%2C204%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 642010 642010 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C0%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold695 SAMTools SNP 642255 642255 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.37%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold695 SAMTools SNP 642949 642949 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 643508 643508 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C12%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.24%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold695 SAMTools SNP 644835 644835 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C5%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 644886 644886 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C3%2C78%2C3%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1.9e-65%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold695 SAMTools SNP 645131 645131 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C147%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 645137 645137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C149%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 645215 645215 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 645497 645497 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold695 SAMTools SNP 645569 645569 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold695 SAMTools SNP 648784 648784 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C184%2C0:99 scaffold695 SAMTools SNP 648793 648793 12.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold695 SAMTools SNP 648946 648946 64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D67%3BPV4%3D5.3e-10%2C1%2C1%2C7.7e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C195:97 scaffold695 SAMTools SNP 648970 648970 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D188%3BPV4%3D5.3e-15%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C218:99 scaffold695 SAMTools SNP 649730 649730 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D408%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C120%2C1%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C0.32%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 650050 650050 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C55%2C43%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00059%2C0.0035%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 650391 650391 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold695 SAMTools SNP 650676 650676 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C212%2C51%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 650798 650798 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C13%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C0.12%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C15%2C0:27 scaffold695 SAMTools SNP 650857 650857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C260%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 653699 653699 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C78%2C88%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1.4e-12%2C0.45%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold695 SAMTools SNP 653708 653708 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 654162 654162 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold695 SAMTools SNP 654490 654490 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D918%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D432%2C159%2C100%2C225%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-35%2C0.001%2C1%2C1.7e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 654917 654917 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D810%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C258%2C473%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 655128 655128 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1039%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C516%2C3%2C262%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.097%2C0.06%2C4.1e-06%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold695 SAMTools SNP 655177 655177 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D936%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C469%2C1%2C278%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 655323 655323 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 655546 655546 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 656879 656879 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C227:50 scaffold695 SAMTools SNP 662745 662745 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C41%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.29%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold695 SAMTools SNP 662927 662927 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold695 SAMTools SNP 663395 663395 138 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C40%2C9%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0024%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold695 SAMTools SNP 663458 663458 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold695 SAMTools SNP 664163 664163 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 664707 664707 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold695 SAMTools SNP 671824 671824 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 671834 671834 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 671848 671848 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold695 SAMTools SNP 672563 672563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C9%2C134%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 672686 672686 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C271%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 672697 672697 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C7%2C69%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 673011 673011 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C62%2C101%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-09%2C2.2e-05%2C1%2C9.6e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 673202 673202 89 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D633%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C114%2C0%2C119%2C95%2C116:99 scaffold695 SAMTools SNP 686487 686487 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0028%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 693693 693693 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold695 SAMTools SNP 694076 694076 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold695 SAMTools SNP 698982 698982 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold695 SAMTools SNP 700184 700184 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold695 SAMTools SNP 700487 700487 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold695 SAMTools SNP 700563 700563 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold695 SAMTools SNP 704975 704975 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold695 SAMTools SNP 705188 705188 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 706136 706136 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold695 SAMTools SNP 706963 706963 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 707909 707909 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 709156 709156 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 709185 709185 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 709768 709768 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold695 SAMTools SNP 713516 713516 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.003%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold695 SAMTools SNP 713978 713978 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold695 SAMTools SNP 714015 714015 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold695 SAMTools SNP 719437 719437 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold695 SAMTools SNP 719851 719851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold695 SAMTools SNP 719904 719904 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold695 SAMTools SNP 720437 720437 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold695 SAMTools SNP 720446 720446 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 721056 721056 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold695 SAMTools SNP 721125 721125 87.5 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C47%2C35%2C115%2C0%2C112:21 scaffold695 SAMTools SNP 722283 722283 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C26:29 scaffold695 SAMTools SNP 722399 722399 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold695 SAMTools SNP 722415 722415 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold695 SAMTools SNP 722454 722454 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold695 SAMTools SNP 725350 725350 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C3%2C0:6 scaffold695 SAMTools SNP 725381 725381 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.039%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold695 SAMTools SNP 741190 741190 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C9%2C43%2C9%3BMQ%3D46%3BFQ%3D203%3BPV4%3D0.44%2C1%2C0.29%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold695 SAMTools SNP 743809 743809 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 745630 745630 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 747385 747385 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold695 SAMTools SNP 749512 749512 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C43%2C0%2C10%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold695 SAMTools SNP 750095 750095 69.5 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C165%2C153%2C173%2C0%2C160:21 scaffold695 SAMTools SNP 751095 751095 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold695 SAMTools SNP 759161 759161 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C0%2C98%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 759904 759904 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C102%2C2%2C23%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.25%2C1%2C1%2C1.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold695 SAMTools SNP 759910 759910 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C102%2C4%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C4.4e-36%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 760118 760118 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C35%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 760359 760359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 760619 760619 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C17%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 761200 761200 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.0012%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold695 SAMTools SNP 761210 761210 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0074%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold695 SAMTools SNP 761211 761211 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold695 SAMTools SNP 761746 761746 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C9%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 761785 761785 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold695 SAMTools SNP 763291 763291 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 763552 763552 47.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold695 SAMTools SNP 764258 764258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 764327 764327 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C12%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold695 SAMTools SNP 765209 765209 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold695 SAMTools SNP 766825 766825 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C207:99 scaffold695 SAMTools SNP 767210 767210 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold695 SAMTools SNP 767249 767249 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold695 SAMTools SNP 767396 767396 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C160%2C0:99 scaffold695 SAMTools SNP 767420 767420 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0075%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold695 SAMTools SNP 768006 768006 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.38%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 768381 768381 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.09%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 768687 768687 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold695 SAMTools SNP 769106 769106 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold695 SAMTools SNP 769381 769381 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C17%2C0%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold695 SAMTools SNP 769391 769391 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.53%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold695 SAMTools SNP 769610 769610 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0036%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 769645 769645 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C29%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 769951 769951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 770180 770180 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 770378 770378 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C3%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C84%2C0:99 scaffold695 SAMTools SNP 770447 770447 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0049%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold695 SAMTools SNP 770455 770455 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C14%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.26%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold695 SAMTools SNP 770470 770470 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.24%2C0.022%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold695 SAMTools SNP 771347 771347 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 772608 772608 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold695 SAMTools SNP 774260 774260 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.041%2C0.051%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold695 SAMTools SNP 774913 774913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold695 SAMTools SNP 775504 775504 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.00051%2C1.6e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold695 SAMTools SNP 775862 775862 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold695 SAMTools SNP 776020 776020 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C245:58 scaffold695 SAMTools SNP 776069 776069 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D92.8%3BPV4%3D0.43%2C0.19%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C134:99 scaffold695 SAMTools SNP 776644 776644 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold695 SAMTools SNP 776769 776769 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C16%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.34%2C3.8e-27%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold695 SAMTools SNP 776856 776856 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C35%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1e-23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 777055 777055 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C54%2C0:99 scaffold695 SAMTools SNP 777267 777267 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C0%2C24%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold695 SAMTools SNP 777527 777527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.095%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 777533 777533 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold695 SAMTools SNP 778278 778278 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold695 SAMTools SNP 779037 779037 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold695 SAMTools SNP 780487 780487 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D43%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold695 SAMTools SNP 782463 782463 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold695 SAMTools SNP 782523 782523 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold695 SAMTools SNP 783062 783062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold695 SAMTools SNP 784034 784034 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold695 SAMTools SNP 809356 809356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C0%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold695 SAMTools SNP 809491 809491 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C31%2C47%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 809643 809643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C31%2C38%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.23%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 809664 809664 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C42%2C52%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.084%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 810297 810297 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold695 SAMTools SNP 811126 811126 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold695 SAMTools SNP 811599 811599 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C23%2C4%3BMQ%3D41%3BFQ%3D111%3BPV4%3D0.18%2C1.6e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C209:99 scaffold695 SAMTools SNP 811645 811645 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C3%2C11%3BMQ%3D39%3BFQ%3D171%3BPV4%3D0.1%2C1%2C0.38%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold695 SAMTools SNP 811665 811665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C22%2C7%2C25%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.082%2C0.28%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold695 SAMTools SNP 812535 812535 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C12%2C0%2C5%3BMQ%3D48%3BFQ%3D43%3BPV4%3D0.044%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold695 SAMTools SNP 812595 812595 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C23:26 scaffold695 SAMTools SNP 813635 813635 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C101%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D3.5e-17%2C6.8e-09%2C1%2C3.4e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C251:99 scaffold695 SAMTools SNP 813637 813637 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C80%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D8.6e-12%2C1.3e-12%2C1%2C1.8e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold696 SAMTools SNP 5313 5313 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 5353 5353 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 7574 7574 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold696 SAMTools SNP 15937 15937 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C7.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C160:52 scaffold696 SAMTools SNP 21883 21883 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold696 SAMTools SNP 22977 22977 42 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C1.4e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold696 SAMTools SNP 22996 22996 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C117%2C0:99 scaffold696 SAMTools SNP 24275 24275 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.18%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C32:35 scaffold696 SAMTools SNP 26196 26196 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold696 SAMTools SNP 26226 26226 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C2%2C11%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C2.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold696 SAMTools SNP 28118 28118 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.033%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold696 SAMTools SNP 28182 28182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0015%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold696 SAMTools SNP 28570 28570 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.0042%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 28708 28708 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C60%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold696 SAMTools SNP 29897 29897 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C62%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold696 SAMTools SNP 29960 29960 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 30870 30870 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold696 SAMTools SNP 30899 30899 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold696 SAMTools SNP 33006 33006 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold696 SAMTools SNP 33288 33288 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C193:66 scaffold696 SAMTools SNP 33289 33289 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.32%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C63:66 scaffold696 SAMTools SNP 33295 33295 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold696 SAMTools SNP 33313 33313 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.16%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C155:99 scaffold696 SAMTools SNP 34647 34647 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.0042%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold696 SAMTools SNP 35682 35682 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold696 SAMTools SNP 35961 35961 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold696 SAMTools SNP 43660 43660 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold696 SAMTools SNP 43713 43713 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D19%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.39%2C1e-35%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C245:28 scaffold696 SAMTools SNP 43836 43836 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.023%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold696 SAMTools SNP 43857 43857 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C1%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D2.7e-05%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold696 SAMTools SNP 44303 44303 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C25%2C16%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold696 SAMTools SNP 44820 44820 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C59%2C11%2C11%3BMQ%3D45%3BFQ%3D211%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold696 SAMTools SNP 44913 44913 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C44%2C17%2C4%3BMQ%3D37%3BFQ%3D70%3BPV4%3D0.14%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold696 SAMTools SNP 45356 45356 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C40%2C12%2C11%3BMQ%3D37%3BFQ%3D211%3BPV4%3D0.64%2C0.27%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold696 SAMTools SNP 47693 47693 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C96%2C49%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold696 SAMTools SNP 47718 47718 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold696 SAMTools SNP 47757 47757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C27%3BMQ%3D48%3BFQ%3D-9.5%3BPV4%3D0.015%2C1%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C18:21 scaffold696 SAMTools SNP 47805 47805 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C7%2C52%3BMQ%3D48%3BFQ%3D-90%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold696 SAMTools SNP 48117 48117 220 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C61%2C51%2C5%3BMQ%3D47%3BFQ%3D222%3BPV4%3D6.6e-07%2C2.1e-75%2C9.5e-10%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold696 SAMTools SNP 48633 48633 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C22%2C56%3BMQ%3D37%3BFQ%3D29%3BPV4%3D3e-05%2C0.17%2C1%2C4.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold696 SAMTools SNP 48888 48888 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C7%3BMQ%3D38%3BFQ%3D34%3BPV4%3D0.25%2C1%2C0.0018%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold696 SAMTools SNP 50375 50375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C42%2C26%2C14%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 50741 50741 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D33%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold696 SAMTools SNP 50805 50805 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C51%2C15%2C13%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.00093%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 50853 50853 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C0%2C10%3BMQ%3D45%3BFQ%3D19.1%3BPV4%3D1%2C1%2C0.045%2C3.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C241:49 scaffold696 SAMTools SNP 51165 51165 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold696 SAMTools SNP 51201 51201 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C29%3BMQ%3D49%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold696 SAMTools SNP 52863 52863 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.81%3BPV4%3D1%2C7.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C20:24 scaffold696 SAMTools SNP 53313 53313 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C66%2C67%3BMQ%3D46%3BFQ%3D32%3BPV4%3D0.003%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C59:62 scaffold696 SAMTools SNP 53568 53568 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C0%2C84%3BMQ%3D40%3BFQ%3D88%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C115:99 scaffold696 SAMTools SNP 53952 53952 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 55891 55891 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold696 SAMTools SNP 55927 55927 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C36%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold696 SAMTools SNP 56120 56120 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C39%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold696 SAMTools SNP 56448 56448 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.082%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 56729 56729 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C10%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold696 SAMTools SNP 56777 56777 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold696 SAMTools SNP 56983 56983 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C15%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C249:99 scaffold696 SAMTools SNP 57980 57980 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold696 SAMTools SNP 60840 60840 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold696 SAMTools SNP 60847 60847 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold696 SAMTools SNP 60878 60878 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold696 SAMTools SNP 60914 60914 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold696 SAMTools SNP 61236 61236 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold696 SAMTools SNP 61460 61460 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C54%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold696 SAMTools SNP 61547 61547 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold696 SAMTools SNP 61633 61633 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold696 SAMTools SNP 61634 61634 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold696 SAMTools SNP 61655 61655 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold696 SAMTools SNP 63316 63316 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C195:99 scaffold696 SAMTools SNP 63322 63322 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.36%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold696 SAMTools SNP 63346 63346 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold696 SAMTools SNP 63365 63365 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 63553 63553 35.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold696 SAMTools SNP 67891 67891 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C4e-57%2C1%2C2.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C250:99 scaffold696 SAMTools SNP 68379 68379 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold696 SAMTools SNP 68387 68387 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold696 SAMTools SNP 68459 68459 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.37%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold696 SAMTools SNP 68478 68478 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold696 SAMTools SNP 68795 68795 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 72368 72368 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 74457 74457 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold696 SAMTools SNP 74540 74540 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 12970 12970 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold698 SAMTools SNP 13542 13542 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold698 SAMTools SNP 20670 20670 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold698 SAMTools SNP 25543 25543 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 25820 25820 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 25833 25833 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold698 SAMTools SNP 26054 26054 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold698 SAMTools SNP 26260 26260 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 27081 27081 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 27258 27258 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 27286 27286 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold698 SAMTools SNP 28623 28623 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C34%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold698 SAMTools SNP 33480 33480 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold698 SAMTools SNP 33591 33591 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C38%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 33627 33627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C38%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.46%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 33988 33988 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C21%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 34036 34036 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0033%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C2%2C8%2C18%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold698 SAMTools SNP 34102 34102 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C142%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold698 SAMTools SNP 36238 36238 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 38179 38179 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 40171 40171 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold698 SAMTools SNP 41005 41005 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 41221 41221 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.32%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C180:99 scaffold698 SAMTools SNP 41721 41721 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold698 SAMTools SNP 42609 42609 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 42627 42627 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 44062 44062 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 45374 45374 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold698 SAMTools SNP 84559 84559 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold698 SAMTools SNP 90665 90665 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D15%3BFQ%3D-30%3BPV4%3D0.45%2C0.00068%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold698 SAMTools SNP 90774 90774 45.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C6%2C2%2C5%3BMQ%3D20%3BFQ%3D-32%3BPV4%3D0.46%2C0.26%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C5%2C0:9 scaffold698 SAMTools SNP 91171 91171 69.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C15%2C0:27 scaffold698 SAMTools SNP 91262 91262 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D7.46%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold698 SAMTools SNP 91862 91862 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 91895 91895 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 92507 92507 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold698 SAMTools SNP 92548 92548 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold698 SAMTools SNP 93143 93143 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold698 SAMTools SNP 93994 93994 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 94223 94223 36.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold698 SAMTools SNP 94552 94552 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold698 SAMTools SNP 94571 94571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold698 SAMTools SNP 97461 97461 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.45%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold698 SAMTools SNP 97467 97467 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C11%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.19%2C0.41%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C92:95 scaffold698 SAMTools SNP 98116 98116 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold698 SAMTools SNP 98606 98606 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.18%2C0.0023%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold698 SAMTools SNP 98609 98609 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold698 SAMTools SNP 98633 98633 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.002%2C0.14%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C192:99 scaffold698 SAMTools SNP 101893 101893 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C0%2C10%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.047%2C1%2C1%2C5.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold698 SAMTools SNP 102259 102259 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C11%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold698 SAMTools SNP 103657 103657 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold698 SAMTools SNP 104205 104205 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold698 SAMTools SNP 104258 104258 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C3%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold698 SAMTools SNP 105032 105032 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C31%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold698 SAMTools SNP 105068 105068 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C31%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.4%2C1%2C2.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C254:99 scaffold698 SAMTools SNP 105119 105119 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold698 SAMTools SNP 105767 105767 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold698 SAMTools SNP 105939 105939 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold698 SAMTools SNP 105989 105989 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold698 SAMTools SNP 106037 106037 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold698 SAMTools SNP 106208 106208 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold698 SAMTools SNP 111539 111539 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 111549 111549 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 111723 111723 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold698 SAMTools SNP 114645 114645 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold698 SAMTools SNP 115224 115224 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 115524 115524 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold698 SAMTools SNP 115560 115560 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C18%2C0:33 scaffold698 SAMTools SNP 120154 120154 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C8.9e-27%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C237:72 scaffold698 SAMTools SNP 120160 120160 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold698 SAMTools SNP 121075 121075 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 121117 121117 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold698 SAMTools SNP 121158 121158 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.12%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold698 SAMTools SNP 122252 122252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 122369 122369 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C27%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold698 SAMTools SNP 123500 123500 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold698 SAMTools SNP 123636 123636 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.19%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C141:99 scaffold698 SAMTools SNP 124938 124938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C32%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold698 SAMTools SNP 124957 124957 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold698 SAMTools SNP 126887 126887 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C12%2C8%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold698 SAMTools SNP 127283 127283 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C17%2C13%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C4.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold698 SAMTools SNP 127286 127286 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.1%2C1%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold698 SAMTools SNP 129414 129414 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold698 SAMTools SNP 136248 136248 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold698 SAMTools SNP 136254 136254 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 136461 136461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C17%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold698 SAMTools SNP 136506 136506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold698 SAMTools SNP 136509 136509 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1%2C0.019%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C247:99 scaffold698 SAMTools SNP 136732 136732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C27%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold698 SAMTools SNP 136765 136765 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C245:99 scaffold698 SAMTools SNP 136768 136768 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C165:99 scaffold698 SAMTools SNP 138233 138233 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 138235 138235 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 138423 138423 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.0071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C131:99 scaffold698 SAMTools SNP 138426 138426 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.012%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C231:77 scaffold698 SAMTools SNP 138438 138438 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C172:99 scaffold698 SAMTools SNP 139363 139363 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold698 SAMTools SNP 139854 139854 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 139869 139869 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 141131 141131 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 141182 141182 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 147082 147082 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold698 SAMTools SNP 149236 149236 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold698 SAMTools SNP 149979 149979 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold698 SAMTools SNP 150189 150189 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 150195 150195 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold698 SAMTools SNP 155575 155575 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C19%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold698 SAMTools SNP 155601 155601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold698 SAMTools SNP 155960 155960 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold698 SAMTools SNP 155967 155967 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 159125 159125 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 207438 207438 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.13%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold698 SAMTools SNP 207456 207456 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold698 SAMTools SNP 209171 209171 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold698 SAMTools SNP 210279 210279 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold698 SAMTools SNP 210340 210340 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 212875 212875 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold698 SAMTools SNP 212886 212886 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold698 SAMTools SNP 222057 222057 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C164:72 scaffold698 SAMTools SNP 222085 222085 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C212:69 scaffold698 SAMTools SNP 222154 222154 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C167:36 scaffold698 SAMTools SNP 222943 222943 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold698 SAMTools SNP 222946 222946 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold698 SAMTools SNP 226026 226026 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 227880 227880 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold698 SAMTools SNP 229198 229198 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 229203 229203 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 230872 230872 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 230876 230876 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 231037 231037 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 231046 231046 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 231106 231106 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 231897 231897 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 232151 232151 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 234674 234674 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold698 SAMTools SNP 239628 239628 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold698 SAMTools SNP 247999 247999 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 248038 248038 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 248327 248327 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold698 SAMTools SNP 251504 251504 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold698 SAMTools SNP 255205 255205 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.32%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold698 SAMTools SNP 255220 255220 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold698 SAMTools SNP 256249 256249 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 257394 257394 44.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold698 SAMTools SNP 257852 257852 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 257918 257918 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 260543 260543 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold698 SAMTools SNP 260563 260563 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold698 SAMTools SNP 263138 263138 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold698 SAMTools SNP 263242 263242 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 265124 265124 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 364745 364745 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold698 SAMTools SNP 365436 365436 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold698 SAMTools SNP 365455 365455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C5%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold698 SAMTools SNP 365756 365756 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold698 SAMTools SNP 367762 367762 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.0029%2C0.00012%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold698 SAMTools SNP 367764 367764 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold698 SAMTools SNP 371283 371283 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C7%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold698 SAMTools SNP 372583 372583 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold698 SAMTools SNP 372991 372991 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold698 SAMTools SNP 376360 376360 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold698 SAMTools SNP 376466 376466 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 377126 377126 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 377319 377319 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold698 SAMTools SNP 377373 377373 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold698 SAMTools SNP 377935 377935 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold698 SAMTools SNP 377939 377939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold698 SAMTools SNP 378548 378548 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.089%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold698 SAMTools SNP 378837 378837 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold698 SAMTools SNP 379003 379003 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C215:69 scaffold698 SAMTools SNP 379004 379004 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C214:99 scaffold698 SAMTools SNP 379699 379699 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold698 SAMTools SNP 380570 380570 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold698 SAMTools SNP 380574 380574 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C18%2C0:33 scaffold698 SAMTools SNP 380939 380939 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold698 SAMTools SNP 382826 382826 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 382967 382967 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C202:99 scaffold698 SAMTools SNP 384770 384770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C31%2C94%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 385061 385061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D480%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C90%2C145%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 387411 387411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C29%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 387426 387426 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C7%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-07%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 387462 387462 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C5%2C63%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C4.7e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 387498 387498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C19%2C73%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 387891 387891 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold698 SAMTools SNP 387915 387915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D515%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C364%2C150%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold698 SAMTools SNP 388200 388200 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C107%2C6%2C142%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 388419 388419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D214%2C45%2C136%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 396175 396175 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 422662 422662 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 423917 423917 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 432141 432141 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.66%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C34:37 scaffold698 SAMTools SNP 436693 436693 19 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold698 SAMTools SNP 449884 449884 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C27%2C0:51 scaffold698 SAMTools SNP 450542 450542 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold698 SAMTools SNP 450561 450561 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold698 SAMTools SNP 454706 454706 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 457144 457144 176 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold698 SAMTools SNP 458396 458396 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold698 SAMTools SNP 459443 459443 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 459445 459445 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 460041 460041 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold698 SAMTools SNP 460967 460967 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.26%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold698 SAMTools SNP 461006 461006 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold698 SAMTools SNP 461385 461385 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold698 SAMTools SNP 461388 461388 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold698 SAMTools SNP 510339 510339 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C166:99 scaffold698 SAMTools SNP 553297 553297 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D39.9%3BPV4%3D1%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C84:70 scaffold698 SAMTools SNP 553734 553734 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold698 SAMTools SNP 553976 553976 13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold698 SAMTools SNP 553982 553982 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold698 SAMTools SNP 555214 555214 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 555243 555243 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold698 SAMTools SNP 555637 555637 107 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C226:99 scaffold698 SAMTools SNP 555655 555655 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold698 SAMTools SNP 555889 555889 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.00071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold698 SAMTools SNP 555901 555901 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5554%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-20%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C7:10 scaffold698 SAMTools SNP 556666 556666 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold698 SAMTools SNP 556696 556696 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 556714 556714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold698 SAMTools SNP 556738 556738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold698 SAMTools SNP 556973 556973 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold698 SAMTools SNP 556984 556984 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold698 SAMTools SNP 557400 557400 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 557424 557424 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 557493 557493 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 557517 557517 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 558435 558435 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 558458 558458 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 560141 560141 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C30%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold698 SAMTools SNP 560189 560189 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold698 SAMTools SNP 560234 560234 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.044%2C3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C164:78 scaffold698 SAMTools SNP 560264 560264 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold698 SAMTools SNP 560315 560315 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold698 SAMTools SNP 560973 560973 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold698 SAMTools SNP 560980 560980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold698 SAMTools SNP 566679 566679 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 566994 566994 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold698 SAMTools SNP 567273 567273 204 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0049%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C125:99 scaffold698 SAMTools SNP 568512 568512 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C6.6e-21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold698 SAMTools SNP 568536 568536 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold698 SAMTools SNP 568938 568938 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold698 SAMTools SNP 568968 568968 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold698 SAMTools SNP 569010 569010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold698 SAMTools SNP 569475 569475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold698 SAMTools SNP 569541 569541 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 569864 569864 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 569877 569877 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 578233 578233 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold698 SAMTools SNP 578886 578886 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold698 SAMTools SNP 582366 582366 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 582382 582382 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 582976 582976 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 591971 591971 90.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C12%2C0:21 scaffold698 SAMTools SNP 592329 592329 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold698 SAMTools SNP 592634 592634 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold698 SAMTools SNP 592684 592684 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 594257 594257 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold698 SAMTools SNP 619816 619816 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold698 SAMTools SNP 619819 619819 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold698 SAMTools SNP 619882 619882 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.33%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold698 SAMTools SNP 620938 620938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C4%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold698 SAMTools SNP 621496 621496 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C61%3BMQ%3D50%3BFQ%3D-87%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C60%2C0:99 scaffold698 SAMTools SNP 621553 621553 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold698 SAMTools SNP 622954 622954 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold698 SAMTools SNP 623506 623506 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold698 SAMTools SNP 623767 623767 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 629488 629488 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold698 SAMTools SNP 629500 629500 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C247:99 scaffold698 SAMTools SNP 630324 630324 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C246:99 scaffold698 SAMTools SNP 634351 634351 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C151:99 scaffold698 SAMTools SNP 634375 634375 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold698 SAMTools SNP 635291 635291 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.45%2C0.00087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C177:78 scaffold698 SAMTools SNP 635567 635567 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold698 SAMTools SNP 635597 635597 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold698 SAMTools SNP 636428 636428 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold698 SAMTools SNP 642425 642425 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold698 SAMTools SNP 643968 643968 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C132:63 scaffold698 SAMTools SNP 643998 643998 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold698 SAMTools SNP 647754 647754 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold698 SAMTools SNP 647757 647757 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold698 SAMTools SNP 656136 656136 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.12%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold698 SAMTools SNP 656151 656151 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.25%2C0.00091%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold698 SAMTools SNP 656164 656164 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold698 SAMTools SNP 656323 656323 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold698 SAMTools SNP 656329 656329 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C70:73 scaffold698 SAMTools SNP 656362 656362 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C10%3BMQ%3D24%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C132%2C0:99 scaffold698 SAMTools SNP 656497 656497 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C4%3BMQ%3D22%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C105%2C0:99 scaffold698 SAMTools SNP 658633 658633 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C20%3BMQ%3D24%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C255%2C0:99 scaffold698 SAMTools SNP 658718 658718 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C1%2C38%3BMQ%3D23%3BFQ%3D95%3BPV4%3D1%2C1.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C218:99 scaffold70 SAMTools SNP 6195 6195 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 6197 6197 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 9092 9092 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C12%3BMQ%3D46%3BFQ%3D71%3BPV4%3D1%2C8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C122:99 scaffold70 SAMTools SNP 29274 29274 54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C56:59 scaffold70 SAMTools SNP 29780 29780 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold70 SAMTools SNP 29951 29951 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C15%2C0:27 scaffold70 SAMTools SNP 38607 38607 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 38655 38655 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 41438 41438 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 45826 45826 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold70 SAMTools SNP 45855 45855 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold70 SAMTools SNP 45964 45964 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold70 SAMTools SNP 46350 46350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold70 SAMTools SNP 46395 46395 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold70 SAMTools SNP 46410 46410 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C158:99 scaffold70 SAMTools SNP 46419 46419 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C171:99 scaffold70 SAMTools SNP 47156 47156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C0.22%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold70 SAMTools SNP 48750 48750 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 48774 48774 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C27%2C0:51 scaffold70 SAMTools SNP 48840 48840 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C35:38 scaffold70 SAMTools SNP 48861 48861 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold70 SAMTools SNP 49251 49251 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.5%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C245:99 scaffold70 SAMTools SNP 49544 49544 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C104:99 scaffold70 SAMTools SNP 49625 49625 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold70 SAMTools SNP 49634 49634 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold70 SAMTools SNP 49649 49649 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold70 SAMTools SNP 50161 50161 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 50173 50173 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold70 SAMTools SNP 50176 50176 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold70 SAMTools SNP 50686 50686 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.00039%2C0.43%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold70 SAMTools SNP 50728 50728 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.011%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold70 SAMTools SNP 51234 51234 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold70 SAMTools SNP 52661 52661 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold70 SAMTools SNP 52663 52663 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold70 SAMTools SNP 52686 52686 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 52714 52714 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 52741 52741 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 53269 53269 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold70 SAMTools SNP 53285 53285 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold70 SAMTools SNP 54557 54557 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold70 SAMTools SNP 54653 54653 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.091%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C149:99 scaffold70 SAMTools SNP 55451 55451 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.055%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C201:99 scaffold70 SAMTools SNP 55511 55511 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 55639 55639 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C9%2C0:16 scaffold70 SAMTools SNP 60372 60372 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 60376 60376 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 66915 66915 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C3%2C20%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.24%2C7.6e-45%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold70 SAMTools SNP 67022 67022 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C4%2C22%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C2.2e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold70 SAMTools SNP 67665 67665 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C3.9e-05%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C32:35 scaffold70 SAMTools SNP 68756 68756 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 69355 69355 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 69379 69379 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold70 SAMTools SNP 71775 71775 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 74533 74533 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 74561 74561 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 83344 83344 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 83656 83656 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold70 SAMTools SNP 83658 83658 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 99068 99068 4.75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold70 SAMTools SNP 112058 112058 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 128617 128617 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold70 SAMTools SNP 128857 128857 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold70 SAMTools SNP 130564 130564 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C23%2C83%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.19%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 131776 131776 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C145%2C32%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 138679 138679 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold70 SAMTools SNP 139232 139232 91 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C163:99 scaffold70 SAMTools SNP 139551 139551 203 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C14%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0012%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold70 SAMTools SNP 139750 139750 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.12%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold70 SAMTools SNP 153736 153736 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D31%3BFQ%3D-23%3BPV4%3D0.25%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C4:7 scaffold70 SAMTools SNP 154508 154508 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C7%3BMQ%3D49%3BFQ%3D147%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold70 SAMTools SNP 154547 154547 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.031%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold70 SAMTools SNP 162771 162771 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 162795 162795 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C16%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 165936 165936 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C31%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 165951 165951 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C0%2C27%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1.2e-06%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold70 SAMTools SNP 165966 165966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C54%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold70 SAMTools SNP 166720 166720 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C4%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.18%2C0.32%2C1%2C9.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold70 SAMTools SNP 166744 166744 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C20%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.017%2C0.00048%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold70 SAMTools SNP 166755 166755 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold70 SAMTools SNP 166813 166813 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C9%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold70 SAMTools SNP 167419 167419 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C17%3BMQ%3D50%3BFQ%3D-194%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C0:99 scaffold70 SAMTools SNP 167503 167503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C61%2C23%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 168092 168092 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C11%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 168098 168098 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 168901 168901 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 169095 169095 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.015%2C9.9e-08%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C57:60 scaffold70 SAMTools SNP 169200 169200 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C36%2C0:69 scaffold70 SAMTools SNP 170896 170896 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C5%2C11%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.021%2C3.9e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold70 SAMTools SNP 171031 171031 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C13%2C2%2C17%3BMQ%3D50%3BFQ%3D172%3BPV4%3D2.7e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold70 SAMTools SNP 171614 171614 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C54%2C0%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 171683 171683 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.00023%2C1%2C1%2C3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold70 SAMTools SNP 171960 171960 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 172017 172017 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C199%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 173213 173213 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.034%2C0.4%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold70 SAMTools SNP 173368 173368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C42%2C21%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0026%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold70 SAMTools SNP 173431 173431 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C34%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.38%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 173691 173691 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 173857 173857 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C20%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C193:99 scaffold70 SAMTools SNP 174083 174083 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold70 SAMTools SNP 175388 175388 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 175439 175439 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 175475 175475 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 175490 175490 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C35%2C4%3BMQ%3D50%3BFQ%3D-57%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold70 SAMTools SNP 175511 175511 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C4%2C19%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C9.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold70 SAMTools SNP 175523 175523 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold70 SAMTools SNP 176682 176682 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C3%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold70 SAMTools SNP 178982 178982 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold70 SAMTools SNP 179523 179523 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C49%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold70 SAMTools SNP 179548 179548 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C0%2C17%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold70 SAMTools SNP 181241 181241 193 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C62%2C2%2C31%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.22%2C1.2e-21%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold70 SAMTools SNP 183997 183997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.013%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold70 SAMTools SNP 184024 184024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold70 SAMTools SNP 184096 184096 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C60%2C14%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 184117 184117 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C23%2C6%2C5%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C1%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold70 SAMTools SNP 184726 184726 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C19%2C6%2C5%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.51%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold70 SAMTools SNP 184764 184764 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C16%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.0068%2C1%2C2e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 184810 184810 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C15%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D3.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 185155 185155 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D46%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold70 SAMTools SNP 188621 188621 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C0.03%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold70 SAMTools SNP 190003 190003 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C22%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold70 SAMTools SNP 190409 190409 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold70 SAMTools SNP 190418 190418 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold70 SAMTools SNP 191475 191475 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 191486 191486 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C30%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold70 SAMTools SNP 191499 191499 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 192633 192633 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 192646 192646 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C59%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 192922 192922 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold70 SAMTools SNP 193574 193574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold70 SAMTools SNP 193778 193778 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C21%2C0:39 scaffold70 SAMTools SNP 193784 193784 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold70 SAMTools SNP 195156 195156 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold70 SAMTools SNP 195196 195196 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold70 SAMTools SNP 195279 195279 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold70 SAMTools SNP 195495 195495 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C33%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold70 SAMTools SNP 197956 197956 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 197968 197968 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C20%2C74%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 198183 198183 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C150%2C12%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.49%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 198222 198222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C39%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 198603 198603 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C12%2C48%3BMQ%3D49%3BFQ%3D223%3BPV4%3D0.74%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold70 SAMTools SNP 198639 198639 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C40%2C4%2C10%3BMQ%3D49%3BFQ%3D218%3BPV4%3D0.49%2C1%2C0.17%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold70 SAMTools SNP 198645 198645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C35%3BMQ%3D49%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold70 SAMTools SNP 199620 199620 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold70 SAMTools SNP 201755 201755 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C1%3BMQ%3D48%3BFQ%3D82%3BPV4%3D0.24%2C0.097%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C241:99 scaffold70 SAMTools SNP 201788 201788 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold70 SAMTools SNP 201794 201794 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C2%3BMQ%3D48%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C182:99 scaffold70 SAMTools SNP 203196 203196 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 203198 203198 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold70 SAMTools SNP 206233 206233 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold70 SAMTools SNP 206236 206236 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 206380 206380 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C3%2C0:6 scaffold70 SAMTools SNP 208615 208615 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold70 SAMTools SNP 208630 208630 10.2 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C14%2C8%2C40%2C0%2C37:8 scaffold70 SAMTools SNP 236891 236891 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 241193 241193 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C13%2C59%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.3%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 246228 246228 51.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold70 SAMTools SNP 246610 246610 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold70 SAMTools SNP 247953 247953 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C6%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 247958 247958 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.69%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 260435 260435 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C8%2C21%3BMQ%3D37%3BFQ%3D225%3BPV4%3D0.047%2C1%2C0.092%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 261043 261043 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C15%3BMQ%3D45%3BFQ%3D84%3BPV4%3D0.1%2C3.7e-05%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C178:99 scaffold70 SAMTools SNP 262522 262522 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 266703 266703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold70 SAMTools SNP 270896 270896 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 270942 270942 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold70 SAMTools SNP 274869 274869 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 275403 275403 43.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold70 SAMTools SNP 295900 295900 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.067%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C112:47 scaffold70 SAMTools SNP 367108 367108 20.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold70 SAMTools SNP 367117 367117 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 367318 367318 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold70 SAMTools SNP 375317 375317 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C4%2C65%2C4%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.2e-122%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold70 SAMTools SNP 375380 375380 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C42%2C1%2C42%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1.5e-06%2C8.9e-58%2C1%2C8.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold70 SAMTools SNP 376517 376517 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.41%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold70 SAMTools SNP 378799 378799 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C23%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C4.8e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C194:99 scaffold70 SAMTools SNP 378838 378838 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 380914 380914 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C63%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold70 SAMTools SNP 381810 381810 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold70 SAMTools SNP 393964 393964 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.0013%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C100:37 scaffold70 SAMTools SNP 395030 395030 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold70 SAMTools SNP 398378 398378 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 398416 398416 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.15%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C124:87 scaffold70 SAMTools SNP 400432 400432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C56%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold70 SAMTools SNP 400482 400482 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold70 SAMTools SNP 400976 400976 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D33%3BFQ%3D4.13%3BPV4%3D0.29%2C0.16%2C0.14%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C29:32 scaffold70 SAMTools SNP 412723 412723 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 413516 413516 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 413547 413547 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 413818 413818 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold70 SAMTools SNP 415314 415314 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold70 SAMTools SNP 445267 445267 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold70 SAMTools SNP 480449 480449 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.005%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 481131 481131 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C6%2C10%2C6%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.027%2C0.00027%2C1%2C8.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold70 SAMTools SNP 481686 481686 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C1%2C17%3BMQ%3D50%3BFQ%3D206%3BPV4%3D6.4e-07%2C1%2C1%2C4.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold70 SAMTools SNP 481689 481689 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.072%2C0.46%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold70 SAMTools SNP 481737 481737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 482503 482503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C11%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 482515 482515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.37%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 482542 482542 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C29%2C7%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 482569 482569 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C25%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 483105 483105 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.12%2C0.014%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold70 SAMTools SNP 483717 483717 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold70 SAMTools SNP 484438 484438 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold70 SAMTools SNP 484442 484442 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold70 SAMTools SNP 484461 484461 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.027%2C0.0011%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold70 SAMTools SNP 484724 484724 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0025%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C127:99 scaffold70 SAMTools SNP 491188 491188 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold70 SAMTools SNP 500940 500940 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold70 SAMTools SNP 502070 502070 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.18%2C6.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C172:30 scaffold70 SAMTools SNP 504804 504804 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold70 SAMTools SNP 507806 507806 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C174:99 scaffold70 SAMTools SNP 508167 508167 87.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C15%2C0:27 scaffold70 SAMTools SNP 509426 509426 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 513229 513229 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold70 SAMTools SNP 525145 525145 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 527853 527853 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold70 SAMTools SNP 528998 528998 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold70 SAMTools SNP 529538 529538 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.00048%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C99:99 scaffold70 SAMTools SNP 533480 533480 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold70 SAMTools SNP 534066 534066 152 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.25%2C0.39%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C242:99 scaffold70 SAMTools SNP 534088 534088 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C234:92 scaffold70 SAMTools SNP 534089 534089 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold70 SAMTools SNP 534094 534094 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold70 SAMTools SNP 534138 534138 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 535098 535098 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold70 SAMTools SNP 535113 535113 58.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold70 SAMTools SNP 536195 536195 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 538207 538207 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C250:99 scaffold70 SAMTools SNP 538635 538635 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold70 SAMTools SNP 539055 539055 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 539640 539640 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold70 SAMTools SNP 539660 539660 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold70 SAMTools SNP 541228 541228 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold70 SAMTools SNP 541270 541270 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.044%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold70 SAMTools SNP 541333 541333 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 541339 541339 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 542089 542089 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C238:99 scaffold70 SAMTools SNP 542116 542116 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C7%2C0:12 scaffold70 SAMTools SNP 542152 542152 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold70 SAMTools SNP 544338 544338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold70 SAMTools SNP 544461 544461 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold70 SAMTools SNP 544997 544997 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0059%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold70 SAMTools SNP 545003 545003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold70 SAMTools SNP 545069 545069 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold70 SAMTools SNP 545964 545964 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C99%2C0:99 scaffold70 SAMTools SNP 546060 546060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold70 SAMTools SNP 548125 548125 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold70 SAMTools SNP 548922 548922 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.002%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold70 SAMTools SNP 548934 548934 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C49:52 scaffold70 SAMTools SNP 548936 548936 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.42%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C249:42 scaffold70 SAMTools SNP 548960 548960 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 551401 551401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 552655 552655 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold70 SAMTools SNP 554965 554965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C9%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.25%2C0.15%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold70 SAMTools SNP 557681 557681 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold70 SAMTools SNP 576956 576956 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold70 SAMTools SNP 577146 577146 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.032%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C79:82 scaffold70 SAMTools SNP 577184 577184 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C45:48 scaffold70 SAMTools SNP 578297 578297 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold70 SAMTools SNP 578302 578302 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 578339 578339 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C90%2C0:99 scaffold70 SAMTools SNP 578838 578838 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold70 SAMTools SNP 606282 606282 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold70 SAMTools SNP 609773 609773 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold70 SAMTools SNP 618479 618479 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold70 SAMTools SNP 619964 619964 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 620002 620002 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 621306 621306 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 621384 621384 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 621387 621387 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold70 SAMTools SNP 621962 621962 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold70 SAMTools SNP 622886 622886 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 624739 624739 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 632795 632795 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold70 SAMTools SNP 632799 632799 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold70 SAMTools SNP 632882 632882 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C3.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold70 SAMTools SNP 633368 633368 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.63%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold70 SAMTools SNP 633437 633437 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C3.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C247:66 scaffold70 SAMTools SNP 633478 633478 48.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold70 SAMTools SNP 633707 633707 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.56%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C170:94 scaffold70 SAMTools SNP 635568 635568 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold70 SAMTools SNP 636368 636368 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C17%2C5%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.56%2C2.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold70 SAMTools SNP 636526 636526 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C1%2C17%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.21%2C1.3e-38%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold70 SAMTools SNP 637454 637454 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C90%2C0:99 scaffold70 SAMTools SNP 638000 638000 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 641020 641020 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C162:34 scaffold70 SAMTools SNP 641081 641081 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold70 SAMTools SNP 645106 645106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C42%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 645118 645118 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C16%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold70 SAMTools SNP 646347 646347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C37%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold70 SAMTools SNP 647755 647755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C22%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold70 SAMTools SNP 648609 648609 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 648621 648621 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 648962 648962 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold70 SAMTools SNP 651074 651074 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold70 SAMTools SNP 657926 657926 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C11%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold70 SAMTools SNP 659651 659651 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C2%2C8%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.69%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold70 SAMTools SNP 659762 659762 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold70 SAMTools SNP 659978 659978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold70 SAMTools SNP 660007 660007 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold70 SAMTools SNP 660741 660741 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C33%2C0:63 scaffold70 SAMTools SNP 660802 660802 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.032%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 661641 661641 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold70 SAMTools SNP 663087 663087 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 664695 664695 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold70 SAMTools SNP 664722 664722 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 664905 664905 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold70 SAMTools SNP 665411 665411 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.00099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold70 SAMTools SNP 665630 665630 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold70 SAMTools SNP 665645 665645 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold70 SAMTools SNP 666173 666173 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.2%2C0.067%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold70 SAMTools SNP 666206 666206 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold70 SAMTools SNP 666653 666653 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C18%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold70 SAMTools SNP 668018 668018 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold70 SAMTools SNP 668064 668064 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold70 SAMTools SNP 668174 668174 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.68%2C2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold70 SAMTools SNP 668394 668394 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C5%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.41%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold70 SAMTools SNP 668443 668443 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C6%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0053%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold70 SAMTools SNP 668978 668978 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C219:99 scaffold70 SAMTools SNP 669033 669033 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold70 SAMTools SNP 669102 669102 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold70 SAMTools SNP 670840 670840 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold70 SAMTools SNP 670846 670846 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.23%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold70 SAMTools SNP 670903 670903 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold70 SAMTools SNP 673844 673844 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D38.6%3BPV4%3D0.14%2C0.00013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C71:69 scaffold70 SAMTools SNP 675100 675100 41.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold70 SAMTools SNP 675369 675369 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold70 SAMTools SNP 675591 675591 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 677922 677922 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 679410 679410 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold70 SAMTools SNP 680900 680900 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C138:36 scaffold70 SAMTools SNP 680901 680901 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C141:36 scaffold70 SAMTools SNP 680997 680997 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold70 SAMTools SNP 681009 681009 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold70 SAMTools SNP 681032 681032 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold70 SAMTools SNP 681244 681244 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 681407 681407 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold70 SAMTools SNP 681419 681419 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold70 SAMTools SNP 683258 683258 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold70 SAMTools SNP 683584 683584 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.62%2C9.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold70 SAMTools SNP 684089 684089 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold70 SAMTools SNP 684117 684117 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D71.7%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C110:99 scaffold70 SAMTools SNP 684272 684272 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.37%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold70 SAMTools SNP 684320 684320 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold70 SAMTools SNP 684350 684350 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C243:99 scaffold70 SAMTools SNP 684683 684683 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.11%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold70 SAMTools SNP 686467 686467 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold70 SAMTools SNP 686478 686478 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C12%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.018%2C0.058%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold70 SAMTools SNP 686483 686483 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C24%2C0:45 scaffold70 SAMTools SNP 687178 687178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold70 SAMTools SNP 689313 689313 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold70 SAMTools SNP 689321 689321 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 689407 689407 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C82:28 scaffold70 SAMTools SNP 692394 692394 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 692405 692405 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 692907 692907 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold70 SAMTools SNP 693226 693226 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold70 SAMTools SNP 694809 694809 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold70 SAMTools SNP 698287 698287 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0023%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold70 SAMTools SNP 698294 698294 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C126:67 scaffold70 SAMTools SNP 707366 707366 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 708381 708381 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold70 SAMTools SNP 721941 721941 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold70 SAMTools SNP 765514 765514 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold70 SAMTools SNP 765583 765583 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold70 SAMTools SNP 765601 765601 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C148:99 scaffold70 SAMTools SNP 766080 766080 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold70 SAMTools SNP 766101 766101 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold70 SAMTools SNP 766104 766104 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 767652 767652 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C253:51 scaffold70 SAMTools SNP 767700 767700 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.43%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold70 SAMTools SNP 768112 768112 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold70 SAMTools SNP 768121 768121 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold70 SAMTools SNP 770897 770897 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold70 SAMTools SNP 771368 771368 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold70 SAMTools SNP 772131 772131 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.54%2C0.048%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold70 SAMTools SNP 774060 774060 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D81.9%3BPV4%3D1%2C0.22%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C124:99 scaffold70 SAMTools SNP 775857 775857 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.15%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold70 SAMTools SNP 775872 775872 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold70 SAMTools SNP 775944 775944 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold70 SAMTools SNP 776549 776549 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C33%2C0:63 scaffold70 SAMTools SNP 776591 776591 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C17%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.0031%2C7.5e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold70 SAMTools SNP 776594 776594 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C6%2C12%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.0023%2C1.2e-37%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold70 SAMTools SNP 776648 776648 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.46%2C9.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold70 SAMTools SNP 776696 776696 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold70 SAMTools SNP 777593 777593 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold70 SAMTools SNP 778722 778722 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold70 SAMTools SNP 779087 779087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold70 SAMTools SNP 780768 780768 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold70 SAMTools SNP 780874 780874 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.03%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C226:99 scaffold70 SAMTools SNP 790596 790596 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 790643 790643 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 792874 792874 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.33%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C80:46 scaffold70 SAMTools SNP 793742 793742 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 794302 794302 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold70 SAMTools SNP 794305 794305 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold70 SAMTools SNP 794726 794726 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 794745 794745 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 796829 796829 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 797628 797628 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 797848 797848 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold70 SAMTools SNP 798050 798050 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C33%2C0:63 scaffold70 SAMTools SNP 798347 798347 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.48%2C0.043%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold70 SAMTools SNP 799573 799573 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.061%2C5.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C188:99 scaffold70 SAMTools SNP 799711 799711 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D78.3%3BPV4%3D0.4%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C107:99 scaffold70 SAMTools SNP 802482 802482 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D239%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C235%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C255%2C0:99 scaffold70 SAMTools SNP 803493 803493 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D18%2C6%2C9%2C1%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.64%2C2.1e-08%2C0.061%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold70 SAMTools SNP 813220 813220 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 813280 813280 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 814058 814058 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C182:99 scaffold70 SAMTools SNP 814440 814440 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold70 SAMTools SNP 814473 814473 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold70 SAMTools SNP 814760 814760 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 815041 815041 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold70 SAMTools SNP 815065 815065 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold70 SAMTools SNP 815077 815077 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.59%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold70 SAMTools SNP 816539 816539 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C8%2C3%3BMQ%3D45%3BFQ%3D194%3BPV4%3D0.69%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold70 SAMTools SNP 817735 817735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C11%3BMQ%3D46%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold70 SAMTools SNP 817926 817926 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C40%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.73%2C7.7e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold70 SAMTools SNP 820222 820222 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C42%2C0:81 scaffold70 SAMTools SNP 821655 821655 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C226:78 scaffold70 SAMTools SNP 821686 821686 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C0%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold70 SAMTools SNP 822073 822073 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C66%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold70 SAMTools SNP 822602 822602 46.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold70 SAMTools SNP 822611 822611 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C9.9e-10%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C129:57 scaffold70 SAMTools SNP 823656 823656 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold70 SAMTools SNP 823677 823677 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C31%2C0%2C9%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold70 SAMTools SNP 823719 823719 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold70 SAMTools SNP 823743 823743 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold70 SAMTools SNP 823794 823794 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.53%2C0.0042%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold70 SAMTools SNP 824246 824246 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold70 SAMTools SNP 824252 824252 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold70 SAMTools SNP 824270 824270 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold70 SAMTools SNP 824902 824902 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold70 SAMTools SNP 824980 824980 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold70 SAMTools SNP 825995 825995 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold70 SAMTools SNP 826013 826013 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.17%2C0.2%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold70 SAMTools SNP 826308 826308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C7%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 827566 827566 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 830418 830418 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold70 SAMTools SNP 833489 833489 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 834160 834160 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 834222 834222 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold70 SAMTools SNP 837881 837881 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C18%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.0076%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 838606 838606 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C36%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold70 SAMTools SNP 839869 839869 43 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.52%2C8.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold70 SAMTools SNP 840156 840156 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold70 SAMTools SNP 841915 841915 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C1%2C45%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C6.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold70 SAMTools SNP 841951 841951 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold70 SAMTools SNP 842499 842499 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C21%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.16%2C1%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C108:99 scaffold70 SAMTools SNP 851558 851558 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 863375 863375 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold70 SAMTools SNP 866079 866079 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.21%2C0.00053%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold70 SAMTools SNP 866603 866603 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C9%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold70 SAMTools SNP 878247 878247 14.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold70 SAMTools SNP 878369 878369 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold70 SAMTools SNP 880972 880972 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C14%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0037%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold70 SAMTools SNP 881002 881002 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold70 SAMTools SNP 883374 883374 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold70 SAMTools SNP 884138 884138 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C81%2C0:99 scaffold70 SAMTools SNP 889399 889399 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C220:95 scaffold70 SAMTools SNP 889687 889687 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C5%2C70%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 889882 889882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C73%2C111%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.2e-05%2C1%2C1%2C6.8e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 889921 889921 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C132%2C19%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1.4e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 889930 889930 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D271%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C45%2C1%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-13%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 891429 891429 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C0%2C81%2C1%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.34%2C0.33%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold70 SAMTools SNP 894665 894665 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C197%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 895032 895032 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold70 SAMTools SNP 895322 895322 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C238:99 scaffold70 SAMTools SNP 895478 895478 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold70 SAMTools SNP 895951 895951 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold70 SAMTools SNP 895957 895957 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 895970 895970 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C15%2C0:27 scaffold70 SAMTools SNP 896432 896432 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.061%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C216:99 scaffold70 SAMTools SNP 896554 896554 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold70 SAMTools SNP 896587 896587 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C35:38 scaffold70 SAMTools SNP 896611 896611 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.29%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold70 SAMTools SNP 897035 897035 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C0%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.029%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C55%2C0:99 scaffold70 SAMTools SNP 897077 897077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold70 SAMTools SNP 897377 897377 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C3%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0025%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C235:99 scaffold70 SAMTools SNP 897384 897384 77 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C145%2C254%2C0%2C239:99 scaffold70 SAMTools SNP 898336 898336 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold70 SAMTools SNP 898368 898368 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.019%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold70 SAMTools SNP 898395 898395 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold70 SAMTools SNP 898409 898409 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C8%2C5%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold70 SAMTools SNP 898413 898413 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold70 SAMTools SNP 899225 899225 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold70 SAMTools SNP 899628 899628 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold70 SAMTools SNP 899661 899661 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold70 SAMTools SNP 899706 899706 113 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C86%2C74%2C144%2C0%2C138:21 scaffold70 SAMTools SNP 900025 900025 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold70 SAMTools SNP 900157 900157 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold70 SAMTools SNP 900181 900181 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold70 SAMTools SNP 900846 900846 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold70 SAMTools SNP 901258 901258 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C146:99 scaffold70 SAMTools SNP 902515 902515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C0.024%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 902623 902623 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D49%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold70 SAMTools SNP 902920 902920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C27%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold70 SAMTools SNP 902968 902968 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold70 SAMTools SNP 904299 904299 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold70 SAMTools SNP 904349 904349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C8%2C11%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.061%2C0.27%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold70 SAMTools SNP 904404 904404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C10%2C14%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold70 SAMTools SNP 904797 904797 87.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.33%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C5%2C0:9 scaffold70 SAMTools SNP 904899 904899 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold70 SAMTools SNP 905128 905128 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C19%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.18%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C34:37 scaffold70 SAMTools SNP 906084 906084 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold70 SAMTools SNP 906104 906104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold70 SAMTools SNP 909786 909786 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D22.6%3BPV4%3D2.9e-06%2C8.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C51:53 scaffold70 SAMTools SNP 910434 910434 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold70 SAMTools SNP 911740 911740 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold70 SAMTools SNP 911832 911832 12.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold70 SAMTools SNP 913369 913369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.61%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold70 SAMTools SNP 913424 913424 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.033%2C0.00097%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold70 SAMTools SNP 913569 913569 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold70 SAMTools SNP 913625 913625 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.046%2C0.00018%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold70 SAMTools SNP 913660 913660 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1e-06%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold70 SAMTools SNP 913684 913684 62.3 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C22%2C7%2C88%2C0%2C85:27 scaffold70 SAMTools SNP 913840 913840 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.018%2C2.3e-10%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C251:33 scaffold70 SAMTools SNP 914440 914440 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.56%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold70 SAMTools SNP 914689 914689 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold70 SAMTools SNP 914720 914720 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold70 SAMTools SNP 914721 914721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold70 SAMTools SNP 915354 915354 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold70 SAMTools SNP 915371 915371 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C130:99 scaffold70 SAMTools SNP 915437 915437 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C223:92 scaffold70 SAMTools SNP 916515 916515 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold70 SAMTools SNP 916530 916530 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold70 SAMTools SNP 917317 917317 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 917903 917903 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold70 SAMTools SNP 922357 922357 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold70 SAMTools SNP 923184 923184 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C17%2C6%2C25%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.019%2C7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold70 SAMTools SNP 923202 923202 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C7%2C30%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.28%2C2.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold70 SAMTools SNP 938389 938389 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold70 SAMTools SNP 938401 938401 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold70 SAMTools SNP 952574 952574 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C206:99 scaffold70 SAMTools SNP 952734 952734 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold70 SAMTools SNP 953082 953082 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.26%2C0.13%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold70 SAMTools SNP 953096 953096 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.51%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold70 SAMTools SNP 963046 963046 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold70 SAMTools SNP 963513 963513 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold70 SAMTools SNP 963609 963609 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold70 SAMTools SNP 964321 964321 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold70 SAMTools SNP 965687 965687 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 966186 966186 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold70 SAMTools SNP 966251 966251 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold700 SAMTools SNP 860 860 61 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C68%3BMQ%3D12%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C214%2C0%2C65%2C167%2C62:99 scaffold700 SAMTools SNP 2307 2307 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C16%2C17%2C20%3BMQ%3D19%3BFQ%3D-40%3BPV4%3D0.61%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C13%2C0:23 scaffold700 SAMTools SNP 2515 2515 4.85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C12%2C21%2C9%3BMQ%3D8%3BFQ%3D-45%3BPV4%3D0.0053%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C18%2C0:18 scaffold700 SAMTools SNP 36670 36670 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C5%2C0%3BMQ%3D23%3BFQ%3D23.9%3BPV4%3D0.12%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C51:54 scaffold700 SAMTools SNP 97397 97397 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold700 SAMTools SNP 97448 97448 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold700 SAMTools SNP 97953 97953 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold700 SAMTools SNP 98052 98052 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold700 SAMTools SNP 107055 107055 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold700 SAMTools SNP 141358 141358 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C30%2C0:57 scaffold700 SAMTools SNP 141690 141690 7.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold700 SAMTools SNP 141757 141757 34.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold700 SAMTools SNP 141790 141790 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C2%3BMQ%3D48%3BFQ%3D37%3BPV4%3D1%2C2.3e-12%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C167:67 scaffold700 SAMTools SNP 141887 141887 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C171:99 scaffold700 SAMTools SNP 142559 142559 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold705 SAMTools SNP 1324 1324 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 2600 2600 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold705 SAMTools SNP 3408 3408 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold705 SAMTools SNP 3412 3412 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold705 SAMTools SNP 8649 8649 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C33%2C0:58 scaffold705 SAMTools SNP 8768 8768 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D336%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C7%2C175%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.2%2C6.8e-228%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold705 SAMTools SNP 9062 9062 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C66%2C42%2C1%3BMQ%3D49%3BFQ%3D73%3BPV4%3D1.3e-09%2C2.8e-51%2C0.3%2C3.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold705 SAMTools SNP 9086 9086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C113%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 9461 9461 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C19%2C78%2C10%3BMQ%3D44%3BFQ%3D21%3BPV4%3D0.68%2C1.5e-110%2C0.33%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold705 SAMTools SNP 9504 9504 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C86%2C0%2C38%3BMQ%3D42%3BFQ%3D16.1%3BPV4%3D0.011%2C1.4e-08%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold705 SAMTools SNP 10297 10297 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C133%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 10477 10477 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 10618 10618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 10660 10660 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C44%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold705 SAMTools SNP 10897 10897 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold705 SAMTools SNP 11448 11448 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C164%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 12018 12018 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C131%2C0%2C24%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C240:30 scaffold705 SAMTools SNP 20768 20768 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold705 SAMTools SNP 20769 20769 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold705 SAMTools SNP 20792 20792 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.047%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold705 SAMTools SNP 22746 22746 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 23248 23248 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C36%2C11%2C18%3BMQ%3D50%3BFQ%3D147%3BPV4%3D2.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold705 SAMTools SNP 25936 25936 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D142%2C7%2C22%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.022%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold705 SAMTools SNP 28905 28905 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 29641 29641 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 29679 29679 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold705 SAMTools SNP 29689 29689 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold705 SAMTools SNP 30483 30483 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.1%2C0.0014%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C77:77 scaffold705 SAMTools SNP 30694 30694 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 31242 31242 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 31260 31260 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold705 SAMTools SNP 32110 32110 150 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C204:99 scaffold705 SAMTools SNP 32843 32843 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold705 SAMTools SNP 32870 32870 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold705 SAMTools SNP 33691 33691 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 33697 33697 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 33946 33946 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold705 SAMTools SNP 34111 34111 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold705 SAMTools SNP 34114 34114 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-4.15%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C25:28 scaffold705 SAMTools SNP 34338 34338 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold705 SAMTools SNP 34401 34401 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold705 SAMTools SNP 36567 36567 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0089%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold705 SAMTools SNP 36808 36808 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold705 SAMTools SNP 38326 38326 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold705 SAMTools SNP 82512 82512 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold705 SAMTools SNP 82565 82565 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold705 SAMTools SNP 82598 82598 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold705 SAMTools SNP 84116 84116 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.29%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold705 SAMTools SNP 84307 84307 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 84499 84499 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold705 SAMTools SNP 85701 85701 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0067%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold705 SAMTools SNP 86585 86585 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold705 SAMTools SNP 86631 86631 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold705 SAMTools SNP 86792 86792 74 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold705 SAMTools SNP 86832 86832 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold705 SAMTools SNP 87080 87080 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0104%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold705 SAMTools SNP 87147 87147 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.51%3BPV4%3D1%2C0.00027%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C35:38 scaffold705 SAMTools SNP 87213 87213 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.02%3BPV4%3D1%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C35:28 scaffold705 SAMTools SNP 94338 94338 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold705 SAMTools SNP 97847 97847 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold705 SAMTools SNP 97863 97863 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold705 SAMTools SNP 98104 98104 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold705 SAMTools SNP 98275 98275 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold705 SAMTools SNP 103638 103638 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold705 SAMTools SNP 123354 123354 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold705 SAMTools SNP 123369 123369 49.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold705 SAMTools SNP 124625 124625 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D609%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C601%2C7%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 124754 124754 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C568%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 125108 125108 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C78%2C0%2C216%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.096%2C1%2C3.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold705 SAMTools SNP 125992 125992 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold705 SAMTools SNP 127113 127113 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 127126 127126 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold705 SAMTools SNP 127165 127165 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C241:99 scaffold705 SAMTools SNP 127177 127177 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C244:99 scaffold705 SAMTools SNP 127547 127547 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 127584 127584 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C14%2C37%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold705 SAMTools SNP 127613 127613 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C38%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 128852 128852 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C104%2C0%2C42%3BMQ%3D50%3BFQ%3D59%3BPV4%3D2.8e-06%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold705 SAMTools SNP 128882 128882 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C92%2C0%2C37%3BMQ%3D50%3BFQ%3D49%3BPV4%3D8.5e-07%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold705 SAMTools SNP 129375 129375 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1327%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D511%2C403%2C386%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1.1e-73%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold705 SAMTools SNP 130263 130263 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C37%2C3%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold705 SAMTools SNP 130430 130430 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C3%2C92%2C44%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold705 SAMTools SNP 130503 130503 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C102%2C45%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D2.4e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold705 SAMTools SNP 130623 130623 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C96%2C48%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-08%2C0.046%2C1%2C7.5e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 130885 130885 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C45%2C20%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 130958 130958 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C4.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C207:91 scaffold705 SAMTools SNP 130975 130975 43 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C63%2C0%2C76%2C50%2C73:99 scaffold705 SAMTools SNP 131360 131360 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C14%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold705 SAMTools SNP 131378 131378 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C50%2C26%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 131809 131809 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 132223 132223 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold705 SAMTools SNP 132241 132241 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C40%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold705 SAMTools SNP 132246 132246 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C40%2C0%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.33%2C1%2C1%2C0.00097;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold705 SAMTools SNP 132764 132764 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold705 SAMTools SNP 132779 132779 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.016%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold705 SAMTools SNP 133421 133421 38.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold705 SAMTools SNP 133496 133496 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.054%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 137984 137984 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C1%2C14%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold705 SAMTools SNP 138081 138081 170 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C66:69 scaffold705 SAMTools SNP 139220 139220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 139260 139260 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D26%2C52%2C0%2C21%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0014%2C4.7e-19%2C1%2C2.5e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold705 SAMTools SNP 139499 139499 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D279%2C41%2C159%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 139541 139541 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D371%2C15%2C129%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C4.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 139574 139574 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D592%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D342%2C60%2C82%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.7e-14%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 139592 139592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D522%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D164%2C121%2C92%2C145%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 139909 139909 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold705 SAMTools SNP 139928 139928 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C109%2C41%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0043%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 140226 140226 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C42%2C6%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-06%2C1%2C1%2C7.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 140250 140250 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C113%2C13%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0067%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 141697 141697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D581%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C254%2C53%2C201%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.31%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 142896 142896 31.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold705 SAMTools SNP 144800 144800 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold705 SAMTools SNP 152702 152702 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C20%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.24%2C1%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold705 SAMTools SNP 152729 152729 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.42%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold705 SAMTools SNP 152750 152750 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold705 SAMTools SNP 152846 152846 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C27%2C0:51 scaffold705 SAMTools SNP 152852 152852 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold705 SAMTools SNP 153196 153196 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D20%3BPV4%3D1%2C5.6e-07%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C71:50 scaffold705 SAMTools SNP 156104 156104 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D90.9%3BPV4%3D0.37%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C118:99 scaffold705 SAMTools SNP 157534 157534 21.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C24%2C0:40 scaffold705 SAMTools SNP 157622 157622 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C4%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C114%2C0:99 scaffold705 SAMTools SNP 159513 159513 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold705 SAMTools SNP 164460 164460 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C4.9e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C176:68 scaffold705 SAMTools SNP 164652 164652 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 168487 168487 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C35%2C41%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 168577 168577 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold705 SAMTools SNP 168637 168637 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold705 SAMTools SNP 169476 169476 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 169510 169510 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold705 SAMTools SNP 169931 169931 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C6%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 169945 169945 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C50%2C6%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 169972 169972 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C44%2C8%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 170141 170141 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.51%2C0.019%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold705 SAMTools SNP 170152 170152 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C21%2C0:39 scaffold705 SAMTools SNP 170167 170167 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.31%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 170221 170221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold705 SAMTools SNP 170556 170556 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold705 SAMTools SNP 170601 170601 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C36%2C0:69 scaffold705 SAMTools SNP 170851 170851 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 170884 170884 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 171439 171439 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold705 SAMTools SNP 173958 173958 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold705 SAMTools SNP 174069 174069 30.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold705 SAMTools SNP 174285 174285 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 174354 174354 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 174733 174733 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C11%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold705 SAMTools SNP 174745 174745 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C19%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold705 SAMTools SNP 177420 177420 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold705 SAMTools SNP 177447 177447 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold705 SAMTools SNP 177453 177453 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold705 SAMTools SNP 177480 177480 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.6%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold705 SAMTools SNP 178064 178064 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold705 SAMTools SNP 178118 178118 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.49%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 178389 178389 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C7%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 179073 179073 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold705 SAMTools SNP 179074 179074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold705 SAMTools SNP 179108 179108 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C6%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold705 SAMTools SNP 179304 179304 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold705 SAMTools SNP 179350 179350 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C7.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C166:99 scaffold705 SAMTools SNP 179649 179649 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold705 SAMTools SNP 180242 180242 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold705 SAMTools SNP 180262 180262 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold705 SAMTools SNP 181959 181959 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold705 SAMTools SNP 182241 182241 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold705 SAMTools SNP 182587 182587 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold705 SAMTools SNP 196260 196260 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D692%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D206%2C139%2C217%2C130%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 197114 197114 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.31%2C5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C208:61 scaffold705 SAMTools SNP 197185 197185 58 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C45%2C0%2C89%2C31%2C86:87 scaffold705 SAMTools SNP 200332 200332 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold705 SAMTools SNP 200354 200354 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold705 SAMTools SNP 200378 200378 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold705 SAMTools SNP 200606 200606 64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.26%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold705 SAMTools SNP 200624 200624 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.35%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold705 SAMTools SNP 201216 201216 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C3%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 201655 201655 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.41%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold705 SAMTools SNP 201700 201700 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold705 SAMTools SNP 202376 202376 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C10%2C4%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold705 SAMTools SNP 202644 202644 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.089%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold705 SAMTools SNP 202659 202659 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold705 SAMTools SNP 202711 202711 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold705 SAMTools SNP 202733 202733 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.066%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C218:99 scaffold705 SAMTools SNP 203171 203171 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold705 SAMTools SNP 205578 205578 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C4%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D0.25%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold705 SAMTools SNP 206009 206009 164 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C33%2C0:63 scaffold705 SAMTools SNP 208518 208518 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold705 SAMTools SNP 210301 210301 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.2%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold705 SAMTools SNP 210316 210316 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold705 SAMTools SNP 210418 210418 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 210455 210455 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 214375 214375 45.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold705 SAMTools SNP 214492 214492 22.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C24%2C0:41 scaffold705 SAMTools SNP 214868 214868 41.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold705 SAMTools SNP 214943 214943 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C8.6e-10%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C158:39 scaffold705 SAMTools SNP 215312 215312 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 217513 217513 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold705 SAMTools SNP 217687 217687 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.052%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C63:39 scaffold705 SAMTools SNP 221542 221542 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold705 SAMTools SNP 221569 221569 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold705 SAMTools SNP 221601 221601 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold705 SAMTools SNP 224131 224131 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C150:36 scaffold705 SAMTools SNP 224557 224557 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold705 SAMTools SNP 224622 224622 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C142:99 scaffold705 SAMTools SNP 225787 225787 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold705 SAMTools SNP 227712 227712 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold705 SAMTools SNP 227915 227915 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.54%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C231:99 scaffold705 SAMTools SNP 228344 228344 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold705 SAMTools SNP 229381 229381 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold705 SAMTools SNP 233306 233306 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold705 SAMTools SNP 235400 235400 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 235415 235415 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.24%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold705 SAMTools SNP 236374 236374 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.47%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C240:99 scaffold705 SAMTools SNP 238224 238224 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C12%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold705 SAMTools SNP 239076 239076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold705 SAMTools SNP 239148 239148 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C9%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold705 SAMTools SNP 240204 240204 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold705 SAMTools SNP 241083 241083 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C10%2C14%3BMQ%3D50%3BFQ%3D197%3BPV4%3D2.7e-06%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold705 SAMTools SNP 241116 241116 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C70%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold705 SAMTools SNP 243384 243384 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0083%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C188:68 scaffold705 SAMTools SNP 248764 248764 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C6%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold705 SAMTools SNP 248884 248884 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C26%2C4%2C8%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.055%2C4e-30%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold705 SAMTools SNP 248924 248924 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D2.8e-05%2C2.1e-32%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold705 SAMTools SNP 248954 248954 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold705 SAMTools SNP 250144 250144 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold705 SAMTools SNP 250396 250396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C50%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold705 SAMTools SNP 252026 252026 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold705 SAMTools SNP 253836 253836 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold705 SAMTools SNP 264466 264466 31.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold705 SAMTools SNP 265619 265619 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold705 SAMTools SNP 271357 271357 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold705 SAMTools SNP 273273 273273 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold705 SAMTools SNP 273309 273309 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold705 SAMTools SNP 273321 273321 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold705 SAMTools SNP 276969 276969 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold705 SAMTools SNP 281287 281287 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.23%2C1.7e-20%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold705 SAMTools SNP 285206 285206 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold705 SAMTools SNP 286559 286559 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold705 SAMTools SNP 286601 286601 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C162%2C0%2C72%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold705 SAMTools SNP 286670 286670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D-186%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C159%2C0:99 scaffold705 SAMTools SNP 287250 287250 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold705 SAMTools SNP 287337 287337 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C53%2C1%2C8%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.37%2C3.3e-12%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold705 SAMTools SNP 316229 316229 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold705 SAMTools SNP 316845 316845 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 316872 316872 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 329588 329588 27.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D35%3BFQ%3D-32%3BPV4%3D1%2C1.5e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C5%2C0:9 scaffold705 SAMTools SNP 330620 330620 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold705 SAMTools SNP 330780 330780 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C39%2C0:72 scaffold705 SAMTools SNP 351831 351831 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 352059 352059 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 352282 352282 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold705 SAMTools SNP 423589 423589 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C81%2C0:99 scaffold705 SAMTools SNP 424038 424038 24.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold705 SAMTools SNP 424064 424064 49.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold707 SAMTools SNP 17671 17671 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold707 SAMTools SNP 17697 17697 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold707 SAMTools SNP 17761 17761 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold707 SAMTools SNP 20987 20987 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C15%2C0:27 scaffold707 SAMTools SNP 22631 22631 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C30%2C0:57 scaffold707 SAMTools SNP 42418 42418 45 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C1%3BMQ%3D47%3BFQ%3D48%3BPV4%3D1%2C1%2C0.066%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold707 SAMTools SNP 43652 43652 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D44%3BFQ%3D39%3BPV4%3D0.5%2C0.14%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C195:69 scaffold707 SAMTools SNP 43672 43672 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold707 SAMTools SNP 44375 44375 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold707 SAMTools SNP 109802 109802 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C20%2C1%3BMQ%3D36%3BFQ%3D22%3BPV4%3D1%2C1e-38%2C0.26%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C202:52 scaffold707 SAMTools SNP 110151 110151 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D48%3BFQ%3D23%3BPV4%3D0.35%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C195:53 scaffold707 SAMTools SNP 110171 110171 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C169:99 scaffold707 SAMTools SNP 116627 116627 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold707 SAMTools SNP 117626 117626 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold707 SAMTools SNP 117648 117648 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold707 SAMTools SNP 123854 123854 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C8%2C21%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.043%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold707 SAMTools SNP 127823 127823 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold707 SAMTools SNP 127838 127838 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.00046;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold707 SAMTools SNP 127854 127854 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C42%2C0:81 scaffold707 SAMTools SNP 128747 128747 55.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold707 SAMTools SNP 128755 128755 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold707 SAMTools SNP 129359 129359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C10%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold707 SAMTools SNP 129745 129745 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C7%2C3%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.49%2C0.4%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold707 SAMTools SNP 129757 129757 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C21%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.38%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold707 SAMTools SNP 129783 129783 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C3%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.43%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold707 SAMTools SNP 132602 132602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold707 SAMTools SNP 132610 132610 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C18%2C0:33 scaffold707 SAMTools SNP 132628 132628 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C3%2C0:6 scaffold707 SAMTools SNP 133101 133101 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.53%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold707 SAMTools SNP 133917 133917 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C51%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold707 SAMTools SNP 136124 136124 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C19%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold707 SAMTools SNP 138248 138248 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold707 SAMTools SNP 141287 141287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold707 SAMTools SNP 141346 141346 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.31%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold707 SAMTools SNP 141349 141349 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.46%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold707 SAMTools SNP 141371 141371 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00013%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold707 SAMTools SNP 143517 143517 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C0%2C10%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold707 SAMTools SNP 143529 143529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold707 SAMTools SNP 144688 144688 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C6%2C90%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.38%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold707 SAMTools SNP 147591 147591 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold707 SAMTools SNP 147999 147999 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold707 SAMTools SNP 150122 150122 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold707 SAMTools SNP 150318 150318 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold707 SAMTools SNP 150370 150370 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold707 SAMTools SNP 150413 150413 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold707 SAMTools SNP 150431 150431 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold707 SAMTools SNP 150628 150628 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold707 SAMTools SNP 150935 150935 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold707 SAMTools SNP 150982 150982 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold707 SAMTools SNP 151029 151029 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold707 SAMTools SNP 151434 151434 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold707 SAMTools SNP 151439 151439 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold707 SAMTools SNP 151463 151463 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold707 SAMTools SNP 152126 152126 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.35%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C26:29 scaffold707 SAMTools SNP 152524 152524 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C0.064%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold707 SAMTools SNP 153228 153228 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.4%2C0.0064%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C127:53 scaffold707 SAMTools SNP 153275 153275 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold707 SAMTools SNP 153674 153674 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold707 SAMTools SNP 157917 157917 4.11 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold707 SAMTools SNP 162050 162050 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C21%2C0:39 scaffold707 SAMTools SNP 162065 162065 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold707 SAMTools SNP 162197 162197 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold707 SAMTools SNP 162992 162992 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C3%3BMQ%3D43%3BFQ%3D44%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C71:74 scaffold707 SAMTools SNP 163686 163686 149 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D42%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C73%2C205%2C0%2C190:27 scaffold707 SAMTools SNP 163722 163722 75.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C6%2C1%3BMQ%3D26%3BFQ%3D-34%3BPV4%3D0.015%2C0.38%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C7%2C0:12 scaffold707 SAMTools SNP 165145 165145 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C7%2C1%3BMQ%3D32%3BFQ%3D-40%3BPV4%3D0.067%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C13%2C0:23 scaffold707 SAMTools SNP 168477 168477 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C8%3BMQ%3D32%3BFQ%3D30%3BPV4%3D0.026%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C57:60 scaffold707 SAMTools SNP 169170 169170 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C5%3BMQ%3D46%3BFQ%3D78%3BPV4%3D0.0062%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold707 SAMTools SNP 169245 169245 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold707 SAMTools SNP 170878 170878 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold707 SAMTools SNP 170941 170941 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold707 SAMTools SNP 171378 171378 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold707 SAMTools SNP 171477 171477 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.14%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold707 SAMTools SNP 173393 173393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold707 SAMTools SNP 173402 173402 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold709 SAMTools SNP 4367 4367 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C36%2C0:69 scaffold709 SAMTools SNP 5395 5395 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold709 SAMTools SNP 5440 5440 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold709 SAMTools SNP 10944 10944 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 11793 11793 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold709 SAMTools SNP 12072 12072 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold709 SAMTools SNP 12087 12087 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold709 SAMTools SNP 13520 13520 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 15001 15001 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold709 SAMTools SNP 15046 15046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold709 SAMTools SNP 16390 16390 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold709 SAMTools SNP 16593 16593 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 20588 20588 8.65 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold709 SAMTools SNP 25199 25199 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C222:72 scaffold709 SAMTools SNP 26304 26304 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 26309 26309 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 26376 26376 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold709 SAMTools SNP 27143 27143 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold709 SAMTools SNP 27279 27279 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.52%2C1.6e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C158:99 scaffold709 SAMTools SNP 48117 48117 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C6%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.57%2C0.47%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold709 SAMTools SNP 48298 48298 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold709 SAMTools SNP 53364 53364 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold709 SAMTools SNP 53366 53366 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold709 SAMTools SNP 56696 56696 8.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold709 SAMTools SNP 64177 64177 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 64654 64654 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.0008%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C88:70 scaffold709 SAMTools SNP 64670 64670 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold709 SAMTools SNP 64683 64683 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.23%2C0.21%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold709 SAMTools SNP 65629 65629 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold709 SAMTools SNP 66338 66338 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold709 SAMTools SNP 66509 66509 28.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold709 SAMTools SNP 76302 76302 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold709 SAMTools SNP 120199 120199 41.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold709 SAMTools SNP 121338 121338 13.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C18%2C0:27 scaffold709 SAMTools SNP 151569 151569 38.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold709 SAMTools SNP 152197 152197 52.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold709 SAMTools SNP 152216 152216 52.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold709 SAMTools SNP 158731 158731 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold709 SAMTools SNP 158916 158916 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold709 SAMTools SNP 163231 163231 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold709 SAMTools SNP 165347 165347 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 185911 185911 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C33:36 scaffold709 SAMTools SNP 185971 185971 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C160:36 scaffold709 SAMTools SNP 186201 186201 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C27%2C0:51 scaffold709 SAMTools SNP 186595 186595 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D35%3BFQ%3D6.98%3BPV4%3D1%2C0.0011%2C0.058%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold709 SAMTools SNP 306865 306865 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 306870 306870 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold709 SAMTools SNP 307547 307547 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 376308 376308 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold709 SAMTools SNP 376312 376312 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold709 SAMTools SNP 376893 376893 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold709 SAMTools SNP 386539 386539 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 386540 386540 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 386778 386778 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold709 SAMTools SNP 386819 386819 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold709 SAMTools SNP 388604 388604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold709 SAMTools SNP 397788 397788 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold709 SAMTools SNP 397794 397794 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold709 SAMTools SNP 398137 398137 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 399227 399227 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold709 SAMTools SNP 403189 403189 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C18%2C0:33 scaffold709 SAMTools SNP 403309 403309 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C16%2C10%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.096%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold709 SAMTools SNP 403718 403718 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C81%2C0:99 scaffold709 SAMTools SNP 404079 404079 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C27%2C0:51 scaffold709 SAMTools SNP 404259 404259 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C118:30 scaffold709 SAMTools SNP 408780 408780 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 409412 409412 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold709 SAMTools SNP 409595 409595 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold709 SAMTools SNP 409926 409926 5.29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold709 SAMTools SNP 411824 411824 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold709 SAMTools SNP 411961 411961 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold709 SAMTools SNP 413937 413937 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold709 SAMTools SNP 420270 420270 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 422427 422427 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold709 SAMTools SNP 423620 423620 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 423661 423661 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.63%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold709 SAMTools SNP 423703 423703 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold709 SAMTools SNP 424649 424649 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 425972 425972 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 426009 426009 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 426599 426599 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C23%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold709 SAMTools SNP 432963 432963 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold709 SAMTools SNP 433666 433666 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold709 SAMTools SNP 435635 435635 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.017%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold709 SAMTools SNP 437581 437581 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.097%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C234:99 scaffold709 SAMTools SNP 437626 437626 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C13%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 438944 438944 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C232:99 scaffold709 SAMTools SNP 439893 439893 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold709 SAMTools SNP 440028 440028 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold709 SAMTools SNP 440055 440055 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold709 SAMTools SNP 441584 441584 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 441593 441593 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.25%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold709 SAMTools SNP 441650 441650 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.18%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold709 SAMTools SNP 442428 442428 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold709 SAMTools SNP 442432 442432 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold709 SAMTools SNP 443236 443236 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold709 SAMTools SNP 443245 443245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold709 SAMTools SNP 444396 444396 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold709 SAMTools SNP 444426 444426 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold709 SAMTools SNP 445228 445228 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold709 SAMTools SNP 445229 445229 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold709 SAMTools SNP 446206 446206 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold709 SAMTools SNP 447042 447042 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold709 SAMTools SNP 447084 447084 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold709 SAMTools SNP 448001 448001 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold709 SAMTools SNP 455779 455779 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold709 SAMTools SNP 456167 456167 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.28%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C254:99 scaffold709 SAMTools SNP 456369 456369 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.091%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold709 SAMTools SNP 456417 456417 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.07%2C0.0094%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold709 SAMTools SNP 456431 456431 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C0.35%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold709 SAMTools SNP 456651 456651 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 457012 457012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 457027 457027 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C32%2C22%3BMQ%3D50%3BFQ%3D-144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold709 SAMTools SNP 457261 457261 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 457309 457309 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C13%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C9.1e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 457741 457741 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold709 SAMTools SNP 457760 457760 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C30%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold709 SAMTools SNP 458037 458037 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 458830 458830 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold709 SAMTools SNP 458920 458920 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold709 SAMTools SNP 459299 459299 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.21%2C1%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold709 SAMTools SNP 459356 459356 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C6%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 460764 460764 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.023%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold709 SAMTools SNP 461181 461181 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C0%2C7%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold709 SAMTools SNP 461211 461211 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C4.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold709 SAMTools SNP 463647 463647 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold709 SAMTools SNP 514880 514880 31.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold709 SAMTools SNP 551471 551471 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C39%2C0:75 scaffold709 SAMTools SNP 551583 551583 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.012%2C9.9e-06%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold709 SAMTools SNP 551630 551630 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C69%2C0:99 scaffold709 SAMTools SNP 559192 559192 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 560231 560231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold709 SAMTools SNP 561221 561221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold709 SAMTools SNP 561370 561370 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C45%2C5%2C31%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.42%2C5.5e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold709 SAMTools SNP 561391 561391 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C32%2C12%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C7.1e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 17684 17684 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 17816 17816 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 91841 91841 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C24%2C0:45 scaffold71 SAMTools SNP 96571 96571 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold71 SAMTools SNP 96610 96610 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold71 SAMTools SNP 96622 96622 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold71 SAMTools SNP 105203 105203 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C3.5e-10%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold71 SAMTools SNP 105232 105232 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold71 SAMTools SNP 105238 105238 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.22%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold71 SAMTools SNP 105876 105876 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 108530 108530 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold71 SAMTools SNP 108537 108537 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold71 SAMTools SNP 109463 109463 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C5%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold71 SAMTools SNP 109508 109508 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C0%2C55%2C0%3BMQ%3D49%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold71 SAMTools SNP 111363 111363 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C3%2C79%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.72%2C0.098%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 111375 111375 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C8%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold71 SAMTools SNP 111721 111721 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C7%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.15%2C0.00052%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold71 SAMTools SNP 111744 111744 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D47%3BFQ%3D115%3BPV4%3D0.52%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C201:99 scaffold71 SAMTools SNP 112443 112443 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold71 SAMTools SNP 112452 112452 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D35%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C54%2C0:99 scaffold71 SAMTools SNP 114029 114029 4.76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D1%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C75%2C0:42 scaffold71 SAMTools SNP 114448 114448 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C15%2C0:27 scaffold71 SAMTools SNP 115128 115128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold71 SAMTools SNP 115499 115499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C14%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold71 SAMTools SNP 127827 127827 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C8%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1.4e-16%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 128760 128760 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold71 SAMTools SNP 128811 128811 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold71 SAMTools SNP 134308 134308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C29%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C3.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 134318 134318 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold71 SAMTools SNP 134948 134948 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 135564 135564 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold71 SAMTools SNP 135567 135567 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.044%2C0.22%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold71 SAMTools SNP 136376 136376 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 138290 138290 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 138826 138826 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 138835 138835 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold71 SAMTools SNP 139484 139484 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold71 SAMTools SNP 139498 139498 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold71 SAMTools SNP 139528 139528 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 139561 139561 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold71 SAMTools SNP 139582 139582 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold71 SAMTools SNP 139615 139615 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold71 SAMTools SNP 140015 140015 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold71 SAMTools SNP 141236 141236 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold71 SAMTools SNP 141260 141260 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold71 SAMTools SNP 141293 141293 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold71 SAMTools SNP 141571 141571 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold71 SAMTools SNP 141601 141601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold71 SAMTools SNP 141634 141634 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold71 SAMTools SNP 141942 141942 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C6.5e-09%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 142023 142023 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 142413 142413 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold71 SAMTools SNP 142496 142496 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C6%2C7%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold71 SAMTools SNP 143375 143375 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C4%2C6%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold71 SAMTools SNP 143420 143420 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.25%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 143486 143486 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C10%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.3e-06%2C0.073%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 143865 143865 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C2%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold71 SAMTools SNP 144131 144131 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold71 SAMTools SNP 145360 145360 73.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold71 SAMTools SNP 146124 146124 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C19%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold71 SAMTools SNP 146208 146208 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C13%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold71 SAMTools SNP 146694 146694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C27%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold71 SAMTools SNP 147176 147176 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C24%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold71 SAMTools SNP 147240 147240 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C26%2C25%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1.3e-05%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold71 SAMTools SNP 147285 147285 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C15%2C1%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.14%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold71 SAMTools SNP 147563 147563 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold71 SAMTools SNP 147575 147575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold71 SAMTools SNP 148323 148323 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 149997 149997 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C0.05%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 150056 150056 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C11%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.68%2C0.0022%2C1%2C0.00096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 150350 150350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C183%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold71 SAMTools SNP 151543 151543 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C102%2C0:99 scaffold71 SAMTools SNP 158638 158638 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.62%2C0.32%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold71 SAMTools SNP 159004 159004 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 159328 159328 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C11%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 159361 159361 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C9%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1.6e-05%2C6.7e-09%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold71 SAMTools SNP 159377 159377 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0242%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C36%2C2%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.16%2C0.0061%2C1%2C0.00099;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold71 SAMTools SNP 159404 159404 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 159426 159426 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C5%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.0027%2C0.00044%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold71 SAMTools SNP 159895 159895 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold71 SAMTools SNP 160223 160223 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold71 SAMTools SNP 160337 160337 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C19%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold71 SAMTools SNP 161213 161213 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold71 SAMTools SNP 161231 161231 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C72%2C0:99 scaffold71 SAMTools SNP 161309 161309 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold71 SAMTools SNP 161557 161557 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold71 SAMTools SNP 180736 180736 28.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold71 SAMTools SNP 180960 180960 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold71 SAMTools SNP 218470 218470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 230594 230594 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 268496 268496 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 268500 268500 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C42:41 scaffold71 SAMTools SNP 290891 290891 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold71 SAMTools SNP 291022 291022 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold71 SAMTools SNP 291286 291286 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold71 SAMTools SNP 308656 308656 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C6%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.035%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 308686 308686 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C45%2C9%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 309476 309476 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 309527 309527 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold71 SAMTools SNP 310270 310270 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.49%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 310318 310318 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.12%2C0.043%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold71 SAMTools SNP 310647 310647 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold71 SAMTools SNP 310655 310655 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold71 SAMTools SNP 310919 310919 124 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold71 SAMTools SNP 311114 311114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C54%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold71 SAMTools SNP 311316 311316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 311562 311562 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold71 SAMTools SNP 311599 311599 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold71 SAMTools SNP 311796 311796 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold71 SAMTools SNP 311804 311804 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 311843 311843 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold71 SAMTools SNP 312736 312736 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C5%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold71 SAMTools SNP 312805 312805 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.19%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold71 SAMTools SNP 313088 313088 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold71 SAMTools SNP 313113 313113 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold71 SAMTools SNP 313190 313190 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold71 SAMTools SNP 314042 314042 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold71 SAMTools SNP 314353 314353 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C18%2C3%2C3%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.66%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold71 SAMTools SNP 314396 314396 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C18%2C5%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.29%2C0.045%2C1%2C9.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold71 SAMTools SNP 314449 314449 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C35%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold71 SAMTools SNP 314747 314747 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C39%2C11%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 315193 315193 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C52%2C0%2C16%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.0095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold71 SAMTools SNP 315202 315202 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C45%2C0%2C16%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.0042%2C0.23%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold71 SAMTools SNP 315216 315216 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.0014%2C1%2C1%2C4.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold71 SAMTools SNP 315310 315310 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C19%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00071%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 315678 315678 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C8%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-05%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 316115 316115 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C2%2C7%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold71 SAMTools SNP 316136 316136 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.15%2C1%2C1%2C3.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold71 SAMTools SNP 316157 316157 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C21%2C0:39 scaffold71 SAMTools SNP 316389 316389 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.11%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold71 SAMTools SNP 316419 316419 206 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.33%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C4%2C0:7 scaffold71 SAMTools SNP 316440 316440 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold71 SAMTools SNP 316719 316719 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C8%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.51%2C0.011%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold71 SAMTools SNP 316752 316752 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold71 SAMTools SNP 317058 317058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.0013%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 317251 317251 21.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold71 SAMTools SNP 320084 320084 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C250:99 scaffold71 SAMTools SNP 320252 320252 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C245:99 scaffold71 SAMTools SNP 320254 320254 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C217:99 scaffold71 SAMTools SNP 320279 320279 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.072%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 322775 322775 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold71 SAMTools SNP 325156 325156 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold71 SAMTools SNP 325172 325172 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold71 SAMTools SNP 325184 325184 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold71 SAMTools SNP 325187 325187 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold71 SAMTools SNP 325597 325597 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C33%2C0:63 scaffold71 SAMTools SNP 325642 325642 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold71 SAMTools SNP 326900 326900 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold71 SAMTools SNP 327200 327200 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold71 SAMTools SNP 327290 327290 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold71 SAMTools SNP 328547 328547 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold71 SAMTools SNP 328577 328577 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C4%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C4.9e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold71 SAMTools SNP 329115 329115 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold71 SAMTools SNP 330192 330192 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold71 SAMTools SNP 330242 330242 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold71 SAMTools SNP 330374 330374 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold71 SAMTools SNP 330401 330401 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold71 SAMTools SNP 330512 330512 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.092%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 330888 330888 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C7%2C10%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.11%2C5.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold71 SAMTools SNP 336619 336619 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold71 SAMTools SNP 337597 337597 174 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C21%2C0:39 scaffold71 SAMTools SNP 337634 337634 194 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C21%2C0:39 scaffold71 SAMTools SNP 338730 338730 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold71 SAMTools SNP 338745 338745 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold71 SAMTools SNP 339339 339339 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C39%2C0:75 scaffold71 SAMTools SNP 339344 339344 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold71 SAMTools SNP 340303 340303 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold71 SAMTools SNP 340318 340318 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold71 SAMTools SNP 341804 341804 76.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C21%2C0:39 scaffold71 SAMTools SNP 342450 342450 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold71 SAMTools SNP 342767 342767 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold71 SAMTools SNP 343036 343036 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C104:99 scaffold71 SAMTools SNP 343057 343057 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold71 SAMTools SNP 343565 343565 86.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C18%2C0:33 scaffold71 SAMTools SNP 343667 343667 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C15%2C0:27 scaffold71 SAMTools SNP 343712 343712 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold71 SAMTools SNP 343958 343958 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.27%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C73:76 scaffold71 SAMTools SNP 343999 343999 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.094%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold71 SAMTools SNP 344218 344218 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold71 SAMTools SNP 344424 344424 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold71 SAMTools SNP 344494 344494 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold71 SAMTools SNP 344742 344742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold71 SAMTools SNP 344784 344784 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C3%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C0.14%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold71 SAMTools SNP 344982 344982 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold71 SAMTools SNP 345189 345189 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.44%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold71 SAMTools SNP 345525 345525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold71 SAMTools SNP 345799 345799 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.29%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C239:99 scaffold71 SAMTools SNP 345845 345845 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold71 SAMTools SNP 345848 345848 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold71 SAMTools SNP 345879 345879 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C104:99 scaffold71 SAMTools SNP 346081 346081 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.52%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C152:99 scaffold71 SAMTools SNP 346135 346135 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold71 SAMTools SNP 346138 346138 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold71 SAMTools SNP 346422 346422 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold71 SAMTools SNP 346807 346807 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold71 SAMTools SNP 347141 347141 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold71 SAMTools SNP 347153 347153 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold71 SAMTools SNP 347279 347279 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold71 SAMTools SNP 347282 347282 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold71 SAMTools SNP 347740 347740 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C115:99 scaffold71 SAMTools SNP 347764 347764 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold71 SAMTools SNP 348138 348138 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold71 SAMTools SNP 348437 348437 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold71 SAMTools SNP 348836 348836 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C160:99 scaffold71 SAMTools SNP 348848 348848 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold71 SAMTools SNP 349273 349273 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold71 SAMTools SNP 349805 349805 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold71 SAMTools SNP 349824 349824 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.4%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold71 SAMTools SNP 351442 351442 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 351575 351575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 353070 353070 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.26%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold71 SAMTools SNP 356078 356078 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C18%2C0:33 scaffold71 SAMTools SNP 356105 356105 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold71 SAMTools SNP 356641 356641 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold71 SAMTools SNP 356642 356642 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C195:66 scaffold71 SAMTools SNP 356675 356675 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold71 SAMTools SNP 356955 356955 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold71 SAMTools SNP 357858 357858 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.19%2C0.37%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold71 SAMTools SNP 357876 357876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold71 SAMTools SNP 357878 357878 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.26%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold71 SAMTools SNP 357933 357933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.35%2C0.48%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold71 SAMTools SNP 358843 358843 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold71 SAMTools SNP 358961 358961 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold71 SAMTools SNP 359009 359009 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold71 SAMTools SNP 359556 359556 46.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold71 SAMTools SNP 363293 363293 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold71 SAMTools SNP 364975 364975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold71 SAMTools SNP 365447 365447 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold71 SAMTools SNP 365471 365471 195 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C155:99 scaffold71 SAMTools SNP 366191 366191 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold71 SAMTools SNP 366196 366196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold71 SAMTools SNP 366217 366217 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold71 SAMTools SNP 366789 366789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold71 SAMTools SNP 366793 366793 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C0.087%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold71 SAMTools SNP 372345 372345 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C45%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C138%2C0:99 scaffold71 SAMTools SNP 373202 373202 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold71 SAMTools SNP 373265 373265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C12%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 374097 374097 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold71 SAMTools SNP 374396 374396 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C166%2C22%2C175%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 374870 374870 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C21%2C13%2C17%3BMQ%3D50%3BFQ%3D181%3BPV4%3D9.9e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold71 SAMTools SNP 374885 374885 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C26%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold71 SAMTools SNP 374945 374945 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C39%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 375223 375223 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C17%2C45%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 376301 376301 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C46%2C25%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C0.00078%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold71 SAMTools SNP 382094 382094 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C139:99 scaffold711 SAMTools SNP 68284 68284 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold711 SAMTools SNP 69505 69505 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold711 SAMTools SNP 120508 120508 98.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold711 SAMTools SNP 133934 133934 18.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold711 SAMTools SNP 134032 134032 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C4%2C8%3BMQ%3D49%3BFQ%3D69%3BPV4%3D0.42%2C1.3e-07%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold712 SAMTools SNP 63 63 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C191:76 scaffold712 SAMTools SNP 129 129 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C6%2C67%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 728 728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D281%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C7%2C125%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 1595 1595 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C87%2C14%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 1625 1625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C71%2C15%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 1675 1675 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C48%2C41%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 1714 1714 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C57%2C65%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 2685 2685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D477%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D290%2C67%2C58%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-07%2C1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 3160 3160 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D435%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C225%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 3208 3208 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C203%2C65%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.061%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 3235 3235 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D141%2C166%2C93%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 3530 3530 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C211%2C26%2C85%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.011%2C1.4e-92%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold712 SAMTools SNP 4157 4157 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D196%2C26%2C102%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 4394 4394 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C55%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C4.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C43%2C127:59 scaffold712 SAMTools SNP 4546 4546 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.4e-16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C127:47 scaffold712 SAMTools SNP 9087 9087 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.037%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C42:45 scaffold712 SAMTools SNP 11809 11809 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold712 SAMTools SNP 12260 12260 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 13176 13176 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 15555 15555 9.31 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold712 SAMTools SNP 15563 15563 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold712 SAMTools SNP 16132 16132 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold712 SAMTools SNP 16253 16253 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C27%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C160%2C0:99 scaffold712 SAMTools SNP 19046 19046 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold712 SAMTools SNP 19374 19374 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold712 SAMTools SNP 19377 19377 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold712 SAMTools SNP 19471 19471 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C1%2C74%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 19750 19750 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C81%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.028%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 19921 19921 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C28%2C37%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.17%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 19941 19941 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 20621 20621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C45%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 21033 21033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.5%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 21057 21057 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C27%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 21320 21320 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C28%2C24%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C0.099%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 21338 21338 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C31%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold712 SAMTools SNP 21386 21386 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C23%3BMQ%3D49%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold712 SAMTools SNP 21401 21401 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C1%2C16%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0025%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold712 SAMTools SNP 23764 23764 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C11%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.18%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold712 SAMTools SNP 23767 23767 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.47%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 26628 26628 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold712 SAMTools SNP 26712 26712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold712 SAMTools SNP 26757 26757 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold712 SAMTools SNP 26763 26763 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.14%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold712 SAMTools SNP 26811 26811 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold712 SAMTools SNP 26814 26814 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold712 SAMTools SNP 29043 29043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D43%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold712 SAMTools SNP 29045 29045 64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C4%2C0%3BMQ%3D43%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold712 SAMTools SNP 29165 29165 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C84%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 29481 29481 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C1%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.47%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold712 SAMTools SNP 29541 29541 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C9%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C6.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C196:99 scaffold712 SAMTools SNP 29822 29822 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold712 SAMTools SNP 30440 30440 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.52%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold712 SAMTools SNP 30443 30443 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold712 SAMTools SNP 30446 30446 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold712 SAMTools SNP 30629 30629 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C238:99 scaffold712 SAMTools SNP 30677 30677 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 33220 33220 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold712 SAMTools SNP 33248 33248 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold712 SAMTools SNP 33533 33533 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C6%2C55%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.29%2C7e-111%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold712 SAMTools SNP 33647 33647 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.36%2C6.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold712 SAMTools SNP 34172 34172 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C60%2C0:99 scaffold712 SAMTools SNP 34427 34427 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold712 SAMTools SNP 34451 34451 5.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold712 SAMTools SNP 36220 36220 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C22%2C28%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0029%2C0.41%2C0.078%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 36392 36392 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C17%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.46%2C1%2C0.057%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 36779 36779 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold712 SAMTools SNP 36782 36782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold712 SAMTools SNP 37913 37913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold712 SAMTools SNP 37979 37979 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C3%2C15%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.66%2C4.8e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold712 SAMTools SNP 38039 38039 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold712 SAMTools SNP 38051 38051 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C166:99 scaffold712 SAMTools SNP 38199 38199 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C218:99 scaffold712 SAMTools SNP 38210 38210 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold712 SAMTools SNP 38220 38220 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold712 SAMTools SNP 38283 38283 60.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold712 SAMTools SNP 38304 38304 64.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C6%2C0:10 scaffold712 SAMTools SNP 38570 38570 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold712 SAMTools SNP 38603 38603 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold712 SAMTools SNP 39153 39153 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 39406 39406 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 39415 39415 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold712 SAMTools SNP 40835 40835 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C12%2C1%3BMQ%3D35%3BFQ%3D10.4%3BPV4%3D1%2C0.00011%2C0.0018%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C229:39 scaffold712 SAMTools SNP 45874 45874 40.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C1%2C12%2C2%3BMQ%3D15%3BFQ%3D-38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C11%2C0:19 scaffold712 SAMTools SNP 48171 48171 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C15%2C27%2C8%3BMQ%3D44%3BFQ%3D42%3BPV4%3D0.8%2C7.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold712 SAMTools SNP 52089 52089 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C1%3BMQ%3D45%3BFQ%3D166%3BPV4%3D0.2%2C1%2C0.079%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C193:99 scaffold712 SAMTools SNP 52096 52096 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C3%2C2%2C0%3BMQ%3D45%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold712 SAMTools SNP 52143 52143 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D43%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C203:51 scaffold712 SAMTools SNP 52144 52144 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D43%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C203:51 scaffold712 SAMTools SNP 52828 52828 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C245:76 scaffold712 SAMTools SNP 53099 53099 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C60:63 scaffold712 SAMTools SNP 53101 53101 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C211:34 scaffold712 SAMTools SNP 53143 53143 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C33%2C0:63 scaffold712 SAMTools SNP 53436 53436 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold712 SAMTools SNP 53538 53538 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.23%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold712 SAMTools SNP 53817 53817 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold712 SAMTools SNP 53828 53828 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.34%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold712 SAMTools SNP 53850 53850 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold712 SAMTools SNP 54286 54286 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold712 SAMTools SNP 54492 54492 7.08 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D25%3BFQ%3D-28%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold712 SAMTools SNP 56379 56379 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold712 SAMTools SNP 56390 56390 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold712 SAMTools SNP 56407 56407 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold712 SAMTools SNP 57139 57139 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 66761 66761 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold712 SAMTools SNP 67417 67417 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 70115 70115 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C68%2C11%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6e-34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 73058 73058 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold712 SAMTools SNP 73065 73065 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C4.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C192:74 scaffold712 SAMTools SNP 73093 73093 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0325%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.43%2C1.6e-06%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C98:36 scaffold712 SAMTools SNP 73199 73199 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold712 SAMTools SNP 76376 76376 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C136:77 scaffold712 SAMTools SNP 77889 77889 27 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D29.8%3BPV4%3D0.036%2C4.9e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C69:60 scaffold712 SAMTools SNP 175983 175983 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C30%2C0:57 scaffold712 SAMTools SNP 176125 176125 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C36%2C0:69 scaffold712 SAMTools SNP 176269 176269 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 203148 203148 9.63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C1%2C0:3 scaffold712 SAMTools SNP 229819 229819 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold712 SAMTools SNP 232647 232647 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold712 SAMTools SNP 237742 237742 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold712 SAMTools SNP 318653 318653 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold712 SAMTools SNP 337140 337140 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C39%2C20%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 337632 337632 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C8%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 338483 338483 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 338551 338551 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C10%2C21%2C4%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.26%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold712 SAMTools SNP 338575 338575 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C1%2C21%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.3%2C0.37%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C239:99 scaffold712 SAMTools SNP 339061 339061 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C3%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 339070 339070 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C1%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 339396 339396 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.19%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold712 SAMTools SNP 340222 340222 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D24%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.9e-05%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold712 SAMTools SNP 340232 340232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold712 SAMTools SNP 340274 340274 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0059%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 340544 340544 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 340586 340586 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C34%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.2%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 347633 347633 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold712 SAMTools SNP 347711 347711 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold712 SAMTools SNP 347738 347738 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 357740 357740 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold712 SAMTools SNP 357799 357799 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C15%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold712 SAMTools SNP 361812 361812 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C60%2C0:99 scaffold712 SAMTools SNP 362021 362021 25 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold712 SAMTools SNP 362533 362533 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold712 SAMTools SNP 362555 362555 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold712 SAMTools SNP 362771 362771 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C71:74 scaffold712 SAMTools SNP 363286 363286 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.19%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold712 SAMTools SNP 363295 363295 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold712 SAMTools SNP 363379 363379 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C18%2C1%3BMQ%3D49%3BFQ%3D130%3BPV4%3D0.43%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold712 SAMTools SNP 365369 365369 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C19%2C19%3BMQ%3D49%3BFQ%3D184%3BPV4%3D0.15%2C0.092%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold712 SAMTools SNP 365577 365577 8.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold712 SAMTools SNP 366171 366171 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold712 SAMTools SNP 366260 366260 17.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5101%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1e-13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C14:17 scaffold712 SAMTools SNP 372196 372196 31.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold712 SAMTools SNP 374373 374373 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C71:37 scaffold712 SAMTools SNP 374460 374460 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.59%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold712 SAMTools SNP 375099 375099 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C3.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C143:43 scaffold712 SAMTools SNP 375102 375102 9.75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-42%3BPV4%3D1%2C0%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C15%2C0:20 scaffold712 SAMTools SNP 375126 375126 222 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C52%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0%2C220%2C22%2C205:99 scaffold712 SAMTools SNP 375127 375127 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C52%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold712 SAMTools SNP 375756 375756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D154%2C135%2C18%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6e-07%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 376224 376224 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C57%2C11%2C51%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold712 SAMTools SNP 377503 377503 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C85%2C39%2C12%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.32%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold712 SAMTools SNP 377554 377554 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 377693 377693 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C60%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C184%2C0:99 scaffold712 SAMTools SNP 377714 377714 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C123%2C0:99 scaffold712 SAMTools SNP 378370 378370 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C4.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 379800 379800 51.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C12%2C0:21 scaffold712 SAMTools SNP 380569 380569 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C6%2C10%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0091%2C2.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold712 SAMTools SNP 382905 382905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C140%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 382953 382953 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00057%2C1%2C1%2C5.6e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 384375 384375 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C1%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.63%2C0.026%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold712 SAMTools SNP 384750 384750 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C26%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0019%2C5.2e-26%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold712 SAMTools SNP 384816 384816 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C15%2C22%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.77%2C2.6e-43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold712 SAMTools SNP 384840 384840 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C6%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.69%2C2.1e-11%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold712 SAMTools SNP 384866 384866 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C23%2C10%2C11%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.61%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold712 SAMTools SNP 384987 384987 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C38%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C169%2C0:99 scaffold712 SAMTools SNP 385281 385281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 385431 385431 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D566%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C30%2C0:57 scaffold712 SAMTools SNP 385758 385758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C31%2C33%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 388777 388777 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold712 SAMTools SNP 391197 391197 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C65%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold712 SAMTools SNP 393725 393725 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold712 SAMTools SNP 395589 395589 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold712 SAMTools SNP 406014 406014 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold712 SAMTools SNP 406307 406307 15.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D-8.64%3BPV4%3D0.2%2C9.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C19:22 scaffold712 SAMTools SNP 410857 410857 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold712 SAMTools SNP 418500 418500 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold712 SAMTools SNP 418503 418503 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold712 SAMTools SNP 418579 418579 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0008%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold712 SAMTools SNP 422662 422662 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold712 SAMTools SNP 424943 424943 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D48%3BFQ%3D8.65%3BPV4%3D0.045%2C0.00048%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C240:36 scaffold712 SAMTools SNP 425111 425111 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold712 SAMTools SNP 425168 425168 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold712 SAMTools SNP 428594 428594 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold713 SAMTools SNP 13164 13164 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 13284 13284 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 14107 14107 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold713 SAMTools SNP 14131 14131 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold713 SAMTools SNP 14694 14694 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold713 SAMTools SNP 15245 15245 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold713 SAMTools SNP 15287 15287 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold713 SAMTools SNP 15828 15828 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold713 SAMTools SNP 15831 15831 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold713 SAMTools SNP 16418 16418 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold713 SAMTools SNP 17237 17237 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C8%2C5%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.46%2C8.1e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold713 SAMTools SNP 17338 17338 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C24%2C0:45 scaffold713 SAMTools SNP 17409 17409 25.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C21%2C0:38 scaffold713 SAMTools SNP 20799 20799 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 67060 67060 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold713 SAMTools SNP 67335 67335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C138%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 68264 68264 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 68590 68590 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C165%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 69649 69649 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 72204 72204 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold713 SAMTools SNP 72270 72270 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold713 SAMTools SNP 76197 76197 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold713 SAMTools SNP 76263 76263 105 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold713 SAMTools SNP 76605 76605 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold713 SAMTools SNP 76677 76677 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold713 SAMTools SNP 76682 76682 99.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C15%2C0:27 scaffold713 SAMTools SNP 76688 76688 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C18%2C0:33 scaffold713 SAMTools SNP 81891 81891 26.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold713 SAMTools SNP 81893 81893 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C159:99 scaffold713 SAMTools SNP 83373 83373 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 83842 83842 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold713 SAMTools SNP 85270 85270 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C48%2C0:93 scaffold713 SAMTools SNP 85299 85299 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold713 SAMTools SNP 86116 86116 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C0%2C8%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.039%2C2.2e-07%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold713 SAMTools SNP 97280 97280 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.21%2C0.0046%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C230:34 scaffold713 SAMTools SNP 98199 98199 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold713 SAMTools SNP 99073 99073 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 99634 99634 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 100465 100465 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold713 SAMTools SNP 102103 102103 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C28%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold713 SAMTools SNP 102331 102331 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold713 SAMTools SNP 103004 103004 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold713 SAMTools SNP 103224 103224 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C6%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold713 SAMTools SNP 103276 103276 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold713 SAMTools SNP 104976 104976 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold713 SAMTools SNP 107315 107315 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold713 SAMTools SNP 107548 107548 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold713 SAMTools SNP 109597 109597 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold713 SAMTools SNP 109678 109678 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold713 SAMTools SNP 110075 110075 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold713 SAMTools SNP 110132 110132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C7%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold713 SAMTools SNP 117929 117929 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold713 SAMTools SNP 118012 118012 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C190%2C0:99 scaffold713 SAMTools SNP 120760 120760 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold713 SAMTools SNP 121238 121238 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 121242 121242 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold713 SAMTools SNP 122010 122010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C48%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold713 SAMTools SNP 122015 122015 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 122695 122695 88 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold713 SAMTools SNP 122955 122955 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C303%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 123431 123431 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C54%2C0%2C15%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold713 SAMTools SNP 123814 123814 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.55%2C0.09%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold713 SAMTools SNP 123821 123821 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.031%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold713 SAMTools SNP 123863 123863 213 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C54%2C0:99 scaffold713 SAMTools SNP 126000 126000 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold713 SAMTools SNP 126061 126061 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold713 SAMTools SNP 133501 133501 25.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-35%3BPV4%3D1%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C8%2C0:14 scaffold713 SAMTools SNP 133612 133612 19.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold713 SAMTools SNP 140298 140298 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold713 SAMTools SNP 140590 140590 188 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold713 SAMTools SNP 150520 150520 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 165468 165468 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold713 SAMTools SNP 165829 165829 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C42%2C0:81 scaffold713 SAMTools SNP 208459 208459 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C19%2C27%2C17%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C3.7e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold713 SAMTools SNP 209693 209693 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold713 SAMTools SNP 209852 209852 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold713 SAMTools SNP 209936 209936 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C106%2C4%2C18%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.6%2C0.32%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold713 SAMTools SNP 214007 214007 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold713 SAMTools SNP 216282 216282 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold713 SAMTools SNP 216663 216663 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D5.38%3BPV4%3D1%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C35:32 scaffold713 SAMTools SNP 216797 216797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 218670 218670 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold713 SAMTools SNP 221423 221423 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C106%2C9%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 221434 221434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C110%2C7%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 223915 223915 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.42%2C4.1e-10%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C174:61 scaffold713 SAMTools SNP 228489 228489 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold713 SAMTools SNP 228533 228533 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold713 SAMTools SNP 228544 228544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold713 SAMTools SNP 229256 229256 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold713 SAMTools SNP 229351 229351 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold713 SAMTools SNP 232223 232223 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold713 SAMTools SNP 232859 232859 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C66%2C0:99 scaffold713 SAMTools SNP 233392 233392 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold713 SAMTools SNP 234126 234126 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold713 SAMTools SNP 234185 234185 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 235067 235067 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold713 SAMTools SNP 235078 235078 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold713 SAMTools SNP 236613 236613 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 236670 236670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 237394 237394 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold713 SAMTools SNP 239784 239784 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 239821 239821 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 247145 247145 22.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold713 SAMTools SNP 252751 252751 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold713 SAMTools SNP 253032 253032 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00022%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 253073 253073 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 253121 253121 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 254609 254609 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 254631 254631 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 258733 258733 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold713 SAMTools SNP 259683 259683 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C243:69 scaffold713 SAMTools SNP 260249 260249 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold713 SAMTools SNP 260264 260264 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 261905 261905 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold713 SAMTools SNP 261957 261957 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold713 SAMTools SNP 261992 261992 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold713 SAMTools SNP 262406 262406 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 262424 262424 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 263615 263615 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold713 SAMTools SNP 263651 263651 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold713 SAMTools SNP 264385 264385 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold713 SAMTools SNP 265000 265000 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.088%2C2.7e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C222:39 scaffold713 SAMTools SNP 265025 265025 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.24%2C3.3e-06%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C238:99 scaffold713 SAMTools SNP 265832 265832 16.9 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C15%2C47%2C0%2C44:10 scaffold713 SAMTools SNP 266374 266374 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold713 SAMTools SNP 266421 266421 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold713 SAMTools SNP 266696 266696 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold713 SAMTools SNP 266765 266765 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold713 SAMTools SNP 266826 266826 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold713 SAMTools SNP 267279 267279 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold713 SAMTools SNP 274238 274238 27.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold713 SAMTools SNP 278964 278964 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C20%2C18%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.17%2C6.8e-48%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold713 SAMTools SNP 279081 279081 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0435%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C20%2C41%2C32%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1.3e-06%2C3.2e-100%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C147:28 scaffold713 SAMTools SNP 279281 279281 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C5%2C11%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.46%2C8.6e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold713 SAMTools SNP 279365 279365 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C7.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold713 SAMTools SNP 290061 290061 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold713 SAMTools SNP 290066 290066 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold713 SAMTools SNP 290092 290092 78.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold713 SAMTools SNP 304039 304039 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold713 SAMTools SNP 324129 324129 17.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold713 SAMTools SNP 324189 324189 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C9%2C0:16 scaffold713 SAMTools SNP 324258 324258 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C18:21 scaffold713 SAMTools SNP 324287 324287 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold713 SAMTools SNP 326817 326817 44.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold713 SAMTools SNP 330088 330088 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.012%2C2.6e-05%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold713 SAMTools SNP 330103 330103 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold713 SAMTools SNP 330157 330157 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.13%2C0.36%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C30:33 scaffold713 SAMTools SNP 330446 330446 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold713 SAMTools SNP 330616 330616 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0252%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C21%2C0%2C3%3BMQ%3D49%3BFQ%3D6.2%3BPV4%3D0.54%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold713 SAMTools SNP 330651 330651 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C16%3BMQ%3D49%3BFQ%3D-49%3BPV4%3D1%2C0.29%2C0.42%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold713 SAMTools SNP 330718 330718 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold713 SAMTools SNP 330754 330754 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold713 SAMTools SNP 330773 330773 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C0%3BMQ%3D48%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold713 SAMTools SNP 330910 330910 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold713 SAMTools SNP 331104 331104 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C119:99 scaffold713 SAMTools SNP 331124 331124 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold713 SAMTools SNP 331251 331251 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D43%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C24:27 scaffold713 SAMTools SNP 331254 331254 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold713 SAMTools SNP 349394 349394 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 349418 349418 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 376632 376632 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold713 SAMTools SNP 385065 385065 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0232%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold713 SAMTools SNP 385700 385700 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold713 SAMTools SNP 392073 392073 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 403462 403462 41.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold713 SAMTools SNP 417011 417011 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C10%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold713 SAMTools SNP 417038 417038 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C2%2C87%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C7.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 417756 417756 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold713 SAMTools SNP 417844 417844 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold713 SAMTools SNP 421382 421382 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 421452 421452 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C29%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 422614 422614 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 425716 425716 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 425764 425764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 426729 426729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold713 SAMTools SNP 435484 435484 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold713 SAMTools SNP 450633 450633 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold713 SAMTools SNP 450669 450669 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 451298 451298 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C4%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.65%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold713 SAMTools SNP 451340 451340 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.1%2C0.11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold713 SAMTools SNP 455873 455873 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C46%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold713 SAMTools SNP 456246 456246 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 457115 457115 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 457353 457353 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.59%2C3.9e-21%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold713 SAMTools SNP 457622 457622 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C216:62 scaffold713 SAMTools SNP 458124 458124 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C117%2C0:99 scaffold713 SAMTools SNP 458261 458261 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C9%2C13%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.051%2C8.9e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold713 SAMTools SNP 458450 458450 45 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C69%2C0:99 scaffold713 SAMTools SNP 458459 458459 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C66%2C0:97 scaffold713 SAMTools SNP 461052 461052 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold713 SAMTools SNP 461624 461624 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.26%2C0.023%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold713 SAMTools SNP 461657 461657 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold713 SAMTools SNP 461793 461793 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D2.3e-06%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold713 SAMTools SNP 461798 461798 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C15%2C2%3BMQ%3D50%3BFQ%3D173%3BPV4%3D7.8e-06%2C0.1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold713 SAMTools SNP 462107 462107 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold713 SAMTools SNP 462481 462481 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.044%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C137:99 scaffold713 SAMTools SNP 463095 463095 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold713 SAMTools SNP 463100 463100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold713 SAMTools SNP 463494 463494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C20%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.26%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold713 SAMTools SNP 463978 463978 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C218:99 scaffold713 SAMTools SNP 464456 464456 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold713 SAMTools SNP 464736 464736 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C4%2C5%3BMQ%3D34%3BFQ%3D-43%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C16%2C0:29 scaffold713 SAMTools SNP 465257 465257 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C19%3BMQ%3D3%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C81%2C0:66 scaffold713 SAMTools SNP 468022 468022 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.19%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold713 SAMTools SNP 468374 468374 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold713 SAMTools SNP 468459 468459 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C255%2C0:99 scaffold713 SAMTools SNP 475481 475481 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold713 SAMTools SNP 475938 475938 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C54%2C0:99 scaffold713 SAMTools SNP 476643 476643 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C11%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.64%2C3.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold713 SAMTools SNP 477477 477477 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C10%2C37%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0095%2C1.4e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold713 SAMTools SNP 477708 477708 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C39%2C0:75 scaffold713 SAMTools SNP 477828 477828 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C2e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C29:32 scaffold713 SAMTools SNP 483480 483480 9.97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold713 SAMTools SNP 483556 483556 39.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold713 SAMTools SNP 487019 487019 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C63%2C0:99 scaffold713 SAMTools SNP 487506 487506 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold713 SAMTools SNP 488876 488876 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold713 SAMTools SNP 488973 488973 40.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold713 SAMTools SNP 488994 488994 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold713 SAMTools SNP 489033 489033 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold713 SAMTools SNP 489843 489843 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-78%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C51%2C0:99 scaffold713 SAMTools SNP 489857 489857 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0012%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold713 SAMTools SNP 490789 490789 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold713 SAMTools SNP 491704 491704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold713 SAMTools SNP 491803 491803 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold713 SAMTools SNP 491839 491839 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold713 SAMTools SNP 492486 492486 42.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold713 SAMTools SNP 492511 492511 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.0027%2C0.026%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold713 SAMTools SNP 493363 493363 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold713 SAMTools SNP 493444 493444 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold713 SAMTools SNP 494738 494738 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold713 SAMTools SNP 494741 494741 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold713 SAMTools SNP 506496 506496 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C60%2C0:99 scaffold713 SAMTools SNP 506702 506702 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.11%2C2.3e-14%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold713 SAMTools SNP 507060 507060 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold713 SAMTools SNP 507099 507099 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.3%2C0.00022%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold713 SAMTools SNP 508316 508316 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.61%2C0.042%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold713 SAMTools SNP 508416 508416 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C5.4e-06%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold713 SAMTools SNP 508633 508633 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold713 SAMTools SNP 509312 509312 30.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold713 SAMTools SNP 509478 509478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold714 SAMTools SNP 14409 14409 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold714 SAMTools SNP 14502 14502 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold714 SAMTools SNP 14520 14520 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold714 SAMTools SNP 14523 14523 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold714 SAMTools SNP 24712 24712 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 25120 25120 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 57429 57429 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 57713 57713 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 61044 61044 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold714 SAMTools SNP 61707 61707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold714 SAMTools SNP 61743 61743 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.39%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C196:30 scaffold714 SAMTools SNP 62482 62482 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C17%3BMQ%3D48%3BFQ%3D208%3BPV4%3D0.041%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold714 SAMTools SNP 62636 62636 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold714 SAMTools SNP 62809 62809 215 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.37%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C26:29 scaffold714 SAMTools SNP 63298 63298 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold714 SAMTools SNP 63345 63345 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 63406 63406 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D48%3BFQ%3D118%3BPV4%3D1%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C145:99 scaffold714 SAMTools SNP 63606 63606 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold714 SAMTools SNP 80951 80951 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 80965 80965 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold714 SAMTools SNP 83720 83720 182 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.021%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C186:99 scaffold714 SAMTools SNP 84964 84964 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.05%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C132:99 scaffold714 SAMTools SNP 90686 90686 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0119%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold714 SAMTools SNP 93140 93140 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 209041 209041 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold714 SAMTools SNP 213470 213470 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold714 SAMTools SNP 232948 232948 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold714 SAMTools SNP 250963 250963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold714 SAMTools SNP 251012 251012 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold714 SAMTools SNP 261870 261870 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold714 SAMTools SNP 303155 303155 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold714 SAMTools SNP 303804 303804 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold714 SAMTools SNP 303862 303862 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 318597 318597 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold714 SAMTools SNP 339729 339729 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold714 SAMTools SNP 341877 341877 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold714 SAMTools SNP 342916 342916 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 365609 365609 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0324%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold714 SAMTools SNP 370575 370575 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold714 SAMTools SNP 374685 374685 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C36%2C0:68 scaffold714 SAMTools SNP 377919 377919 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.00042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C124:30 scaffold714 SAMTools SNP 379128 379128 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold714 SAMTools SNP 380161 380161 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.021%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C205:48 scaffold714 SAMTools SNP 380195 380195 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C17%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.66%2C4.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold714 SAMTools SNP 380327 380327 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5.5e-09%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C107:46 scaffold714 SAMTools SNP 383991 383991 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 390011 390011 187 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C187:99 scaffold714 SAMTools SNP 390567 390567 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C7%2C58%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold714 SAMTools SNP 395156 395156 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold714 SAMTools SNP 415492 415492 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold714 SAMTools SNP 418552 418552 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold714 SAMTools SNP 418662 418662 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold714 SAMTools SNP 425602 425602 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C14%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.37%2C0.0074%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold714 SAMTools SNP 425605 425605 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.57%2C0.0032%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold714 SAMTools SNP 437932 437932 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold714 SAMTools SNP 439421 439421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold714 SAMTools SNP 439571 439571 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold714 SAMTools SNP 441190 441190 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C41%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold714 SAMTools SNP 441240 441240 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold715 SAMTools SNP 603 603 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C51%2C0:99 scaffold715 SAMTools SNP 1325 1325 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D47%3BFQ%3D18.1%3BPV4%3D1%2C0.0067%2C0.3%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C45:48 scaffold715 SAMTools SNP 48509 48509 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold715 SAMTools SNP 85416 85416 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold715 SAMTools SNP 85417 85417 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold715 SAMTools SNP 100709 100709 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold715 SAMTools SNP 107064 107064 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C48%2C0:93 scaffold715 SAMTools SNP 110254 110254 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold716 SAMTools SNP 2580 2580 55.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold716 SAMTools SNP 55871 55871 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold716 SAMTools SNP 93986 93986 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold716 SAMTools SNP 94135 94135 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 94626 94626 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold716 SAMTools SNP 95313 95313 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold716 SAMTools SNP 96437 96437 28.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C18%2C0:33 scaffold716 SAMTools SNP 96574 96574 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C75%2C0:99 scaffold716 SAMTools SNP 96706 96706 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold716 SAMTools SNP 100916 100916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C42%3BMQ%3D33%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold716 SAMTools SNP 101629 101629 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.00041%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C254:99 scaffold716 SAMTools SNP 101671 101671 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold716 SAMTools SNP 102151 102151 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D70.5%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C98:99 scaffold716 SAMTools SNP 103664 103664 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.45%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C152:99 scaffold716 SAMTools SNP 104923 104923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 105263 105263 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.16%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C238:99 scaffold716 SAMTools SNP 106260 106260 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C11%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.21%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold716 SAMTools SNP 111110 111110 212 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C233:99 scaffold716 SAMTools SNP 111134 111134 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C235:99 scaffold716 SAMTools SNP 111158 111158 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C244:99 scaffold716 SAMTools SNP 111979 111979 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C10%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.019%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold716 SAMTools SNP 112009 112009 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C2%2C14%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold716 SAMTools SNP 112331 112331 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold716 SAMTools SNP 112382 112382 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C217:99 scaffold716 SAMTools SNP 112769 112769 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.33%2C1.6e-11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold716 SAMTools SNP 112787 112787 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold716 SAMTools SNP 113135 113135 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold716 SAMTools SNP 113549 113549 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold716 SAMTools SNP 113555 113555 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C10%2C8%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.4%2C0.091%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold716 SAMTools SNP 113963 113963 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold716 SAMTools SNP 114028 114028 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C36%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold716 SAMTools SNP 114101 114101 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.016%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold716 SAMTools SNP 114655 114655 100 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.3%2C0.0065%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold716 SAMTools SNP 114670 114670 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.067%2C0.013%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold716 SAMTools SNP 114688 114688 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0062%2C0.46%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold716 SAMTools SNP 114916 114916 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.63%2C0.03%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold716 SAMTools SNP 114961 114961 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold716 SAMTools SNP 115003 115003 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.17%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold716 SAMTools SNP 115483 115483 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C15%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 115849 115849 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold716 SAMTools SNP 116183 116183 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C51%2C0:99 scaffold716 SAMTools SNP 116819 116819 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C39%3BMQ%3D50%3BFQ%3D-68%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C41%2C0:79 scaffold716 SAMTools SNP 116918 116918 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C218:99 scaffold716 SAMTools SNP 117276 117276 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C10%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 118260 118260 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold716 SAMTools SNP 118272 118272 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold716 SAMTools SNP 119816 119816 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold716 SAMTools SNP 119876 119876 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C0%2C10%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.093%2C1.4e-09%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold716 SAMTools SNP 120217 120217 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C132:99 scaffold716 SAMTools SNP 120630 120630 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.024%2C0.0041%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C189:99 scaffold716 SAMTools SNP 121000 121000 11.4 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C211%2C216%2C0%2C198:32 scaffold716 SAMTools SNP 121051 121051 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.3%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C200:99 scaffold716 SAMTools SNP 121368 121368 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold716 SAMTools SNP 123068 123068 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.3%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C241:99 scaffold716 SAMTools SNP 123119 123119 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 123464 123464 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C82:85 scaffold716 SAMTools SNP 123602 123602 44.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold716 SAMTools SNP 123698 123698 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold716 SAMTools SNP 123705 123705 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold716 SAMTools SNP 124145 124145 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold716 SAMTools SNP 124501 124501 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold716 SAMTools SNP 124619 124619 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.47%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C163:53 scaffold716 SAMTools SNP 124676 124676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C6%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold716 SAMTools SNP 124700 124700 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C6%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold716 SAMTools SNP 125226 125226 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold716 SAMTools SNP 125304 125304 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 125351 125351 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 126559 126559 34.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold716 SAMTools SNP 127201 127201 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold716 SAMTools SNP 127432 127432 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 132599 132599 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C27%2C0:51 scaffold716 SAMTools SNP 153836 153836 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold716 SAMTools SNP 153871 153871 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold716 SAMTools SNP 156447 156447 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold716 SAMTools SNP 156724 156724 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 164739 164739 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold716 SAMTools SNP 164778 164778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold716 SAMTools SNP 165500 165500 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold716 SAMTools SNP 165611 165611 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold716 SAMTools SNP 165973 165973 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold716 SAMTools SNP 166371 166371 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold716 SAMTools SNP 166486 166486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold716 SAMTools SNP 167047 167047 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C128%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold716 SAMTools SNP 168672 168672 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold716 SAMTools SNP 168709 168709 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold716 SAMTools SNP 169141 169141 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C52%2C2%2C30%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.63%2C1.7e-52%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold716 SAMTools SNP 173019 173019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold716 SAMTools SNP 173027 173027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold716 SAMTools SNP 173106 173106 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold716 SAMTools SNP 173127 173127 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold716 SAMTools SNP 174039 174039 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold716 SAMTools SNP 174130 174130 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.46%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C236:99 scaffold716 SAMTools SNP 174135 174135 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D64%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C186:34 scaffold716 SAMTools SNP 174747 174747 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 174771 174771 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 175492 175492 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold716 SAMTools SNP 176323 176323 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C19%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold716 SAMTools SNP 176688 176688 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold716 SAMTools SNP 176716 176716 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C239:99 scaffold716 SAMTools SNP 176763 176763 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.18%2C5.5e-14%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold716 SAMTools SNP 176783 176783 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C5%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.39%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold716 SAMTools SNP 176969 176969 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold716 SAMTools SNP 177006 177006 163 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C59:99 scaffold716 SAMTools SNP 177309 177309 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C102:99 scaffold716 SAMTools SNP 177357 177357 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold716 SAMTools SNP 177400 177400 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C93%2C0:99 scaffold716 SAMTools SNP 177686 177686 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C21%2C0:39 scaffold716 SAMTools SNP 177744 177744 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C6%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C4.1e-10%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C213:99 scaffold716 SAMTools SNP 177918 177918 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C25%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C129%2C0:99 scaffold716 SAMTools SNP 178008 178008 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C60%2C0:99 scaffold716 SAMTools SNP 178152 178152 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D1%2C2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C5%2C0:9 scaffold716 SAMTools SNP 178629 178629 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold716 SAMTools SNP 178848 178848 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C7%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C135%2C0:99 scaffold716 SAMTools SNP 179363 179363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold716 SAMTools SNP 179420 179420 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold716 SAMTools SNP 179679 179679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C11%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold716 SAMTools SNP 179721 179721 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold716 SAMTools SNP 182953 182953 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C132:99 scaffold716 SAMTools SNP 184249 184249 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0135%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold716 SAMTools SNP 184276 184276 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 184284 184284 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold716 SAMTools SNP 184566 184566 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold716 SAMTools SNP 185449 185449 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C7.9e-05%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C134:71 scaffold716 SAMTools SNP 185512 185512 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 185533 185533 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 187641 187641 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.12%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold716 SAMTools SNP 187683 187683 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.3%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C178:99 scaffold716 SAMTools SNP 187704 187704 91 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C239:99 scaffold716 SAMTools SNP 187986 187986 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold716 SAMTools SNP 187995 187995 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold716 SAMTools SNP 188061 188061 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 188791 188791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C20%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold716 SAMTools SNP 189984 189984 181 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C228:99 scaffold716 SAMTools SNP 203807 203807 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C2%2C77%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.22%2C1.7e-85%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold716 SAMTools SNP 204439 204439 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C18%2C17%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 205895 205895 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 205944 205944 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 205956 205956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 206285 206285 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.53%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold716 SAMTools SNP 207693 207693 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C6%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold716 SAMTools SNP 210613 210613 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.047%2C0.2%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold716 SAMTools SNP 210679 210679 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D330%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C13%2C135%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.021%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 210805 210805 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C15%2C125%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 211121 211121 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C35%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.04%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 211827 211827 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold716 SAMTools SNP 212550 212550 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C9%2C14%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold716 SAMTools SNP 212559 212559 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C6%2C12%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold716 SAMTools SNP 212616 212616 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 212664 212664 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C49%2C3%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold716 SAMTools SNP 221961 221961 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold716 SAMTools SNP 222394 222394 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.027%2C2e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold716 SAMTools SNP 223482 223482 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold716 SAMTools SNP 223667 223667 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold716 SAMTools SNP 223710 223710 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C190:55 scaffold716 SAMTools SNP 224278 224278 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold716 SAMTools SNP 225043 225043 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold716 SAMTools SNP 225084 225084 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold716 SAMTools SNP 225913 225913 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold716 SAMTools SNP 225997 225997 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C57%2C0:99 scaffold716 SAMTools SNP 227906 227906 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.5%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold716 SAMTools SNP 227923 227923 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C29%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.52%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold716 SAMTools SNP 227971 227971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C43%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold716 SAMTools SNP 230133 230133 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C1%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C0.32%2C0.34%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C57:60 scaffold716 SAMTools SNP 238680 238680 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C188:66 scaffold716 SAMTools SNP 241624 241624 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold716 SAMTools SNP 259060 259060 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold716 SAMTools SNP 263910 263910 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold716 SAMTools SNP 291550 291550 5.29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold716 SAMTools SNP 295224 295224 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold716 SAMTools SNP 295301 295301 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C37:34 scaffold716 SAMTools SNP 296497 296497 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold716 SAMTools SNP 298798 298798 18 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold716 SAMTools SNP 298932 298932 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 298977 298977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold716 SAMTools SNP 301234 301234 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold716 SAMTools SNP 301240 301240 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold716 SAMTools SNP 302278 302278 79 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.55%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C251:99 scaffold716 SAMTools SNP 317957 317957 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold716 SAMTools SNP 319719 319719 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold716 SAMTools SNP 319741 319741 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 331770 331770 22.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C5%2C1%3BMQ%3D37%3BFQ%3D-34%3BPV4%3D0.048%2C3.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C7%2C0:12 scaffold716 SAMTools SNP 332004 332004 4.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.8293%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D16%3BFQ%3D-26%3BPV4%3D0.2%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C1:7 scaffold716 SAMTools SNP 332564 332564 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D73.5%3BPV4%3D1%2C0.00078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C110:99 scaffold716 SAMTools SNP 343691 343691 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold716 SAMTools SNP 343718 343718 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D37.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C66:67 scaffold716 SAMTools SNP 343940 343940 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold716 SAMTools SNP 391392 391392 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold716 SAMTools SNP 391442 391442 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold716 SAMTools SNP 391695 391695 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold716 SAMTools SNP 391733 391733 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold716 SAMTools SNP 392443 392443 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold718 SAMTools SNP 2622 2622 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold718 SAMTools SNP 44454 44454 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C94%2C74%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 44478 44478 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C74%2C108%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.92%2C0.49%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 47517 47517 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold718 SAMTools SNP 81290 81290 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold718 SAMTools SNP 84316 84316 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold718 SAMTools SNP 105232 105232 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold718 SAMTools SNP 105271 105271 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.14%2C0.047%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold718 SAMTools SNP 106020 106020 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C0.29%2C1%2C2.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold718 SAMTools SNP 106027 106027 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C0.2%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold718 SAMTools SNP 107246 107246 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold718 SAMTools SNP 111718 111718 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C6%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.35%2C5.3e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold718 SAMTools SNP 112206 112206 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.47%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 115272 115272 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C46%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 115314 115314 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C63%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C193%2C0:99 scaffold718 SAMTools SNP 117540 117540 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold718 SAMTools SNP 119038 119038 156 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C8%2C6%3BMQ%3D40%3BFQ%3D159%3BPV4%3D0.42%2C0.079%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C196:99 scaffold718 SAMTools SNP 119352 119352 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C8%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold718 SAMTools SNP 126288 126288 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 126312 126312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 126593 126593 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C23%2C18%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold718 SAMTools SNP 127010 127010 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold718 SAMTools SNP 127052 127052 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0067%2C0.39%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold718 SAMTools SNP 127546 127546 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C31%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold718 SAMTools SNP 135596 135596 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold718 SAMTools SNP 141195 141195 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold718 SAMTools SNP 142838 142838 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold718 SAMTools SNP 142903 142903 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold718 SAMTools SNP 143091 143091 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold718 SAMTools SNP 143125 143125 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold718 SAMTools SNP 144175 144175 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold718 SAMTools SNP 144311 144311 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.22%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C86:86 scaffold718 SAMTools SNP 144317 144317 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold718 SAMTools SNP 144448 144448 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold718 SAMTools SNP 147145 147145 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold718 SAMTools SNP 147765 147765 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold718 SAMTools SNP 148190 148190 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold718 SAMTools SNP 148195 148195 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C200:99 scaffold718 SAMTools SNP 153173 153173 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold718 SAMTools SNP 155715 155715 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold718 SAMTools SNP 158058 158058 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold718 SAMTools SNP 159022 159022 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold718 SAMTools SNP 161751 161751 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold719 SAMTools SNP 2221 2221 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 2228 2228 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 2414 2414 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C51%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold719 SAMTools SNP 2931 2931 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 2962 2962 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 3368 3368 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 3384 3384 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 4127 4127 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold719 SAMTools SNP 4132 4132 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold719 SAMTools SNP 6865 6865 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C8%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.2%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold719 SAMTools SNP 6938 6938 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C8.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C207:99 scaffold719 SAMTools SNP 7976 7976 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold719 SAMTools SNP 10204 10204 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold719 SAMTools SNP 10748 10748 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold719 SAMTools SNP 11096 11096 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold719 SAMTools SNP 11117 11117 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold719 SAMTools SNP 12239 12239 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold719 SAMTools SNP 12260 12260 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold719 SAMTools SNP 12272 12272 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold719 SAMTools SNP 13161 13161 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C0%2C18%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.038%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold719 SAMTools SNP 13184 13184 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C24%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.2%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold719 SAMTools SNP 13220 13220 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold719 SAMTools SNP 13229 13229 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold719 SAMTools SNP 18455 18455 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C138:74 scaffold719 SAMTools SNP 18470 18470 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold719 SAMTools SNP 18506 18506 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold719 SAMTools SNP 19801 19801 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold719 SAMTools SNP 44338 44338 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold719 SAMTools SNP 44441 44441 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold719 SAMTools SNP 48232 48232 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold719 SAMTools SNP 48874 48874 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold719 SAMTools SNP 54749 54749 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 55691 55691 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 59194 59194 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold719 SAMTools SNP 59864 59864 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold719 SAMTools SNP 59885 59885 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold719 SAMTools SNP 59888 59888 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold719 SAMTools SNP 61957 61957 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold719 SAMTools SNP 61972 61972 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.16%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold719 SAMTools SNP 63443 63443 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold719 SAMTools SNP 77204 77204 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 319420 319420 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D3.48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C30:30 scaffold719 SAMTools SNP 344782 344782 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.012%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold719 SAMTools SNP 383958 383958 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 387958 387958 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold719 SAMTools SNP 389800 389800 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 389976 389976 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 404063 404063 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold719 SAMTools SNP 409868 409868 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold719 SAMTools SNP 410093 410093 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold719 SAMTools SNP 411967 411967 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C6.1e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold719 SAMTools SNP 412330 412330 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C176:99 scaffold719 SAMTools SNP 437923 437923 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold719 SAMTools SNP 437937 437937 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold719 SAMTools SNP 438718 438718 85.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold719 SAMTools SNP 438776 438776 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C5%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.67%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold719 SAMTools SNP 441062 441062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold719 SAMTools SNP 441300 441300 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C23%2C28%2C25%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.45%2C4.7e-51%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold72 SAMTools SNP 5646 5646 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold72 SAMTools SNP 5668 5668 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold72 SAMTools SNP 6088 6088 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold72 SAMTools SNP 6208 6208 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold72 SAMTools SNP 6466 6466 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold72 SAMTools SNP 6515 6515 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C45%2C0:87 scaffold72 SAMTools SNP 7192 7192 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C27%2C0:51 scaffold72 SAMTools SNP 7961 7961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C113%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold72 SAMTools SNP 8093 8093 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold72 SAMTools SNP 9234 9234 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold72 SAMTools SNP 9355 9355 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.2%2C0.016%2C1%2C7.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C227:92 scaffold72 SAMTools SNP 9405 9405 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold72 SAMTools SNP 11785 11785 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold72 SAMTools SNP 11799 11799 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold72 SAMTools SNP 11804 11804 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 12810 12810 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C249:99 scaffold72 SAMTools SNP 12817 12817 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.36%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C250:99 scaffold72 SAMTools SNP 12977 12977 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 13226 13226 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C15%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold72 SAMTools SNP 13304 13304 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold72 SAMTools SNP 24670 24670 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold72 SAMTools SNP 27400 27400 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C2.9e-05%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold72 SAMTools SNP 27425 27425 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold72 SAMTools SNP 34324 34324 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 43378 43378 50.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold72 SAMTools SNP 129729 129729 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 131332 131332 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 174721 174721 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold72 SAMTools SNP 176478 176478 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold72 SAMTools SNP 178116 178116 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold72 SAMTools SNP 178238 178238 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold72 SAMTools SNP 179263 179263 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold72 SAMTools SNP 182079 182079 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold72 SAMTools SNP 187878 187878 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold72 SAMTools SNP 188452 188452 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C140:34 scaffold72 SAMTools SNP 188491 188491 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold72 SAMTools SNP 188862 188862 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 190191 190191 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold72 SAMTools SNP 192538 192538 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold72 SAMTools SNP 193335 193335 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold72 SAMTools SNP 195238 195238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold72 SAMTools SNP 196292 196292 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.094%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold72 SAMTools SNP 196315 196315 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 196711 196711 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold72 SAMTools SNP 196722 196722 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold72 SAMTools SNP 196726 196726 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00035%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold72 SAMTools SNP 197148 197148 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 197444 197444 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold72 SAMTools SNP 197594 197594 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 197830 197830 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C30%2C0:57 scaffold72 SAMTools SNP 197875 197875 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold72 SAMTools SNP 200944 200944 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold72 SAMTools SNP 207126 207126 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C8%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C5.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold72 SAMTools SNP 207837 207837 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 208384 208384 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 208429 208429 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold72 SAMTools SNP 208531 208531 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold72 SAMTools SNP 208566 208566 217 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C87%2C0:99 scaffold72 SAMTools SNP 208594 208594 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold72 SAMTools SNP 211441 211441 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold72 SAMTools SNP 211564 211564 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold72 SAMTools SNP 212731 212731 7.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C5%3BMQ%3D50%3BFQ%3D-67;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C215:44 scaffold72 SAMTools SNP 212735 212735 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.54%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold72 SAMTools SNP 213340 213340 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold72 SAMTools SNP 213528 213528 201 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C3%2C13%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.35%2C8.7e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold72 SAMTools SNP 213580 213580 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.07%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold72 SAMTools SNP 213725 213725 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C33%2C1%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.67%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold72 SAMTools SNP 214240 214240 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold72 SAMTools SNP 228117 228117 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C3.2e-24%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C247:58 scaffold72 SAMTools SNP 228150 228150 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold72 SAMTools SNP 229087 229087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold72 SAMTools SNP 229848 229848 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 229853 229853 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 260312 260312 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D16%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C117%2C0:99 scaffold72 SAMTools SNP 260384 260384 67.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D35%3BFQ%3D-33%3BPV4%3D1%2C0.47%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C27%2C21%2C101%2C0%2C93:10 scaffold72 SAMTools SNP 260393 260393 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C3%3BMQ%3D22%3BFQ%3D-11.3%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C16:19 scaffold72 SAMTools SNP 261952 261952 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold72 SAMTools SNP 425846 425846 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C39%2C0:75 scaffold72 SAMTools SNP 433089 433089 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold72 SAMTools SNP 433304 433304 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold72 SAMTools SNP 434488 434488 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold72 SAMTools SNP 434716 434716 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0023%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C160:39 scaffold72 SAMTools SNP 435265 435265 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold72 SAMTools SNP 435505 435505 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold72 SAMTools SNP 435528 435528 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold72 SAMTools SNP 435852 435852 39.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold72 SAMTools SNP 436657 436657 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold72 SAMTools SNP 436978 436978 12.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C23%2C8%2C38%2C0%2C35:22 scaffold72 SAMTools SNP 441660 441660 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold72 SAMTools SNP 444303 444303 15.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold72 SAMTools SNP 444406 444406 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.015%2C0.17%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C177:99 scaffold72 SAMTools SNP 444436 444436 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C0.093%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold72 SAMTools SNP 444437 444437 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold72 SAMTools SNP 444585 444585 10.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold72 SAMTools SNP 444775 444775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold72 SAMTools SNP 445212 445212 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold72 SAMTools SNP 445613 445613 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold72 SAMTools SNP 461523 461523 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold72 SAMTools SNP 461569 461569 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold72 SAMTools SNP 472219 472219 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold72 SAMTools SNP 473768 473768 30.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold72 SAMTools SNP 517489 517489 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold72 SAMTools SNP 521062 521062 67.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold72 SAMTools SNP 521149 521149 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.038%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C168:31 scaffold721 SAMTools SNP 2033 2033 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 2044 2044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 2201 2201 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 57670 57670 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 57682 57682 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 57710 57710 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold721 SAMTools SNP 58273 58273 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold721 SAMTools SNP 58285 58285 82.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C12%2C0:21 scaffold721 SAMTools SNP 58352 58352 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold721 SAMTools SNP 62264 62264 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 62280 62280 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 65249 65249 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 65252 65252 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 65418 65418 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 65706 65706 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 68058 68058 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold721 SAMTools SNP 68093 68093 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C14%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.43%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold721 SAMTools SNP 68221 68221 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.044%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold721 SAMTools SNP 69780 69780 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C0.34%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold721 SAMTools SNP 69799 69799 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold721 SAMTools SNP 69809 69809 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold721 SAMTools SNP 69841 69841 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C35:38 scaffold721 SAMTools SNP 69842 69842 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 69967 69967 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold721 SAMTools SNP 70899 70899 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 70914 70914 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 71076 71076 96.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold721 SAMTools SNP 71608 71608 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold721 SAMTools SNP 71611 71611 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold721 SAMTools SNP 71613 71613 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold721 SAMTools SNP 87038 87038 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C44%3BMQ%3D49%3BFQ%3D-115%3BPV4%3D1%2C0.19%2C0.44%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C0:99 scaffold721 SAMTools SNP 87040 87040 21.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold721 SAMTools SNP 111928 111928 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold721 SAMTools SNP 112036 112036 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 112400 112400 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 127773 127773 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold721 SAMTools SNP 145091 145091 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold721 SAMTools SNP 150913 150913 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold721 SAMTools SNP 162380 162380 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold721 SAMTools SNP 162394 162394 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 163145 163145 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C54%2C0:99 scaffold721 SAMTools SNP 163254 163254 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C9%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold721 SAMTools SNP 165041 165041 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C3%2C9%3BMQ%3D49%3BFQ%3D208%3BPV4%3D0.59%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold721 SAMTools SNP 165053 165053 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C157:72 scaffold721 SAMTools SNP 165386 165386 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 165400 165400 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 167706 167706 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold721 SAMTools SNP 167718 167718 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.046%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold721 SAMTools SNP 167747 167747 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold721 SAMTools SNP 167938 167938 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold721 SAMTools SNP 168403 168403 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C0.19%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C88:74 scaffold721 SAMTools SNP 168429 168429 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold721 SAMTools SNP 168454 168454 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold721 SAMTools SNP 168997 168997 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.024%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold721 SAMTools SNP 169183 169183 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold721 SAMTools SNP 169347 169347 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold721 SAMTools SNP 169368 169368 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold721 SAMTools SNP 169841 169841 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C1%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 169859 169859 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold721 SAMTools SNP 170136 170136 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold721 SAMTools SNP 170157 170157 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C146:99 scaffold721 SAMTools SNP 170744 170744 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C142:99 scaffold721 SAMTools SNP 171170 171170 148 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold721 SAMTools SNP 171237 171237 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold721 SAMTools SNP 172747 172747 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold721 SAMTools SNP 172753 172753 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold721 SAMTools SNP 173384 173384 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C136:77 scaffold721 SAMTools SNP 177254 177254 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.042%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 179051 179051 45 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C51%2C0:92 scaffold721 SAMTools SNP 215633 215633 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C9.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C164:99 scaffold721 SAMTools SNP 223051 223051 17.1 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C11%2C2%2C46%2C0%2C43:15 scaffold721 SAMTools SNP 223653 223653 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C12%2C20%2C7%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.78%2C1.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold721 SAMTools SNP 224652 224652 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C255%2C0:99 scaffold721 SAMTools SNP 225829 225829 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 230016 230016 3.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold721 SAMTools SNP 233138 233138 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold721 SAMTools SNP 233257 233257 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold721 SAMTools SNP 233260 233260 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold721 SAMTools SNP 233859 233859 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold721 SAMTools SNP 262498 262498 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 264023 264023 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 314855 314855 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold721 SAMTools SNP 319263 319263 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.47%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C244:66 scaffold721 SAMTools SNP 319302 319302 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold721 SAMTools SNP 324648 324648 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold721 SAMTools SNP 327204 327204 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 333799 333799 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.17%2C0.42%2C1%2C9.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C41:44 scaffold721 SAMTools SNP 334102 334102 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold721 SAMTools SNP 334331 334331 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold721 SAMTools SNP 334337 334337 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold721 SAMTools SNP 334375 334375 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold721 SAMTools SNP 334381 334381 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0103%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C221:99 scaffold721 SAMTools SNP 334394 334394 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C166:99 scaffold721 SAMTools SNP 334631 334631 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold721 SAMTools SNP 334637 334637 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold721 SAMTools SNP 334686 334686 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold721 SAMTools SNP 334824 334824 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold721 SAMTools SNP 334844 334844 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold721 SAMTools SNP 336016 336016 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold721 SAMTools SNP 336370 336370 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold721 SAMTools SNP 336409 336409 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold721 SAMTools SNP 336446 336446 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.009%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold721 SAMTools SNP 336624 336624 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.27%2C1%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold721 SAMTools SNP 336629 336629 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C202:99 scaffold721 SAMTools SNP 336636 336636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold721 SAMTools SNP 336669 336669 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C36%2C3%3BMQ%3D50%3BFQ%3D196%3BPV4%3D4.2e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold721 SAMTools SNP 337032 337032 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C4%2C2%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1.1e-06%2C0.29%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold721 SAMTools SNP 338182 338182 33.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold721 SAMTools SNP 338218 338218 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold721 SAMTools SNP 338502 338502 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.4%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold721 SAMTools SNP 338724 338724 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold721 SAMTools SNP 338743 338743 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold721 SAMTools SNP 338754 338754 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C15%2C0:27 scaffold721 SAMTools SNP 339185 339185 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold721 SAMTools SNP 339610 339610 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.11%2C0.31%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold721 SAMTools SNP 339790 339790 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C234:96 scaffold721 SAMTools SNP 339796 339796 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold721 SAMTools SNP 339803 339803 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold721 SAMTools SNP 339858 339858 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold721 SAMTools SNP 340155 340155 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold721 SAMTools SNP 340203 340203 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold721 SAMTools SNP 340644 340644 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 341978 341978 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.17%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold721 SAMTools SNP 342152 342152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.012%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold721 SAMTools SNP 342367 342367 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.44%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C126:99 scaffold721 SAMTools SNP 342421 342421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold721 SAMTools SNP 342847 342847 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 343072 343072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C65%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold721 SAMTools SNP 343093 343093 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C1%2C17%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold721 SAMTools SNP 343780 343780 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C24%2C0:44 scaffold721 SAMTools SNP 344102 344102 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold721 SAMTools SNP 344131 344131 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.026%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold721 SAMTools SNP 344733 344733 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C0.38%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold721 SAMTools SNP 344763 344763 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 345280 345280 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C74%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 345566 345566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 345677 345677 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 345915 345915 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C39%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold721 SAMTools SNP 345939 345939 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold721 SAMTools SNP 346035 346035 222 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0%2C248%2C13%2C245:75 scaffold721 SAMTools SNP 346580 346580 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold721 SAMTools SNP 346600 346600 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D43%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold721 SAMTools SNP 348149 348149 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C19%3BMQ%3D48%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold721 SAMTools SNP 349653 349653 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C39%2C0:75 scaffold721 SAMTools SNP 350328 350328 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold721 SAMTools SNP 354485 354485 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C69%2C0:99 scaffold721 SAMTools SNP 357637 357637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C43%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold721 SAMTools SNP 358743 358743 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 358759 358759 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.024%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold721 SAMTools SNP 359075 359075 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 359136 359136 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold721 SAMTools SNP 359178 359178 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C33%2C0:63 scaffold721 SAMTools SNP 369934 369934 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold721 SAMTools SNP 369977 369977 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D529%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C455%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C255%2C0:99 scaffold721 SAMTools SNP 370122 370122 222 . . REF=N;ALT=G,A;FILTER=.;INFO=DP%3D386%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C292%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0%2C255%2C255%2C255:99 scaffold721 SAMTools SNP 373052 373052 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold721 SAMTools SNP 373086 373086 181 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.47%2C0.46%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C205:99 scaffold721 SAMTools SNP 373361 373361 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold721 SAMTools SNP 374762 374762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold721 SAMTools SNP 375254 375254 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.42%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C217:99 scaffold721 SAMTools SNP 375787 375787 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold721 SAMTools SNP 376019 376019 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.47%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C210:99 scaffold721 SAMTools SNP 379744 379744 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D35%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold721 SAMTools SNP 380792 380792 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.41%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold721 SAMTools SNP 381450 381450 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C8%2C2%3BMQ%3D42%3BFQ%3D136%3BPV4%3D1%2C1%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C163:99 scaffold721 SAMTools SNP 381519 381519 37 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1.4e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C29:32 scaffold721 SAMTools SNP 384605 384605 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 384615 384615 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 385729 385729 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold721 SAMTools SNP 385741 385741 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold721 SAMTools SNP 385910 385910 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold721 SAMTools SNP 385958 385958 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold721 SAMTools SNP 391415 391415 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold721 SAMTools SNP 395108 395108 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold721 SAMTools SNP 395261 395261 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C90%2C0:99 scaffold721 SAMTools SNP 396077 396077 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold721 SAMTools SNP 396078 396078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold721 SAMTools SNP 396992 396992 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold721 SAMTools SNP 397394 397394 26.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D22%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold721 SAMTools SNP 401934 401934 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 405246 405246 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 405548 405548 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C68%2C15%3BMQ%3D45%3BFQ%3D-230%3BPV4%3D1%2C0.28%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C203%2C0:99 scaffold721 SAMTools SNP 405563 405563 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C15%3BMQ%3D45%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold721 SAMTools SNP 406131 406131 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C68%3BMQ%3D50%3BFQ%3D-191%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C164%2C0:99 scaffold721 SAMTools SNP 406367 406367 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C70%3BMQ%3D50%3BFQ%3D-203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C176%2C0:99 scaffold721 SAMTools SNP 418513 418513 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold721 SAMTools SNP 423418 423418 109 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold721 SAMTools SNP 427986 427986 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.029%2C8.5e-11%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C134:84 scaffold721 SAMTools SNP 428353 428353 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold721 SAMTools SNP 428757 428757 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D46%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold721 SAMTools SNP 428779 428779 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C29%3BMQ%3D46%3BFQ%3D-67%3BPV4%3D1%2C0.27%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C40%2C0:77 scaffold721 SAMTools SNP 429293 429293 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 433084 433084 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold721 SAMTools SNP 433432 433432 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold721 SAMTools SNP 433437 433437 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold721 SAMTools SNP 434060 434060 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D14%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C114%2C0:99 scaffold721 SAMTools SNP 434074 434074 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C53%3BMQ%3D12%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C160%2C0:99 scaffold721 SAMTools SNP 434237 434237 7.89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D13%3BFQ%3D-32%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C5%2C0:6 scaffold721 SAMTools SNP 437316 437316 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C243:99 scaffold721 SAMTools SNP 440016 440016 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold721 SAMTools SNP 440026 440026 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 443501 443501 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D833%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C829%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 455061 455061 25.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold721 SAMTools SNP 458543 458543 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold721 SAMTools SNP 476925 476925 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C9.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C19:22 scaffold721 SAMTools SNP 485978 485978 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold721 SAMTools SNP 488230 488230 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C1%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C120%2C0:99 scaffold721 SAMTools SNP 488502 488502 45.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold721 SAMTools SNP 488580 488580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C4%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold721 SAMTools SNP 488851 488851 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C27%2C17%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 490084 490084 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C9%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.0017%2C1%2C1%2C5.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold721 SAMTools SNP 491162 491162 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C231%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 491197 491197 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C186%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 491458 491458 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 491504 491504 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold721 SAMTools SNP 491806 491806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C55%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 492087 492087 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C10%2C37%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 492140 492140 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C19%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.15%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 492528 492528 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C57%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold721 SAMTools SNP 493192 493192 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C12:15 scaffold721 SAMTools SNP 493211 493211 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold721 SAMTools SNP 493228 493228 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C26%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold721 SAMTools SNP 503377 503377 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.34%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C232:99 scaffold721 SAMTools SNP 503429 503429 152 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold721 SAMTools SNP 504623 504623 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold721 SAMTools SNP 504770 504770 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold721 SAMTools SNP 506087 506087 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.057%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold721 SAMTools SNP 508432 508432 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold721 SAMTools SNP 509944 509944 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 510265 510265 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold721 SAMTools SNP 510765 510765 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C3%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold721 SAMTools SNP 510854 510854 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold721 SAMTools SNP 510855 510855 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold721 SAMTools SNP 511522 511522 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 512223 512223 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C23%2C12%2C17%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C5.3e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold721 SAMTools SNP 512356 512356 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C4%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 512580 512580 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C5.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 512633 512633 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold721 SAMTools SNP 513339 513339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold721 SAMTools SNP 513767 513767 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold721 SAMTools SNP 513776 513776 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.0095%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C234:99 scaffold721 SAMTools SNP 514203 514203 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold721 SAMTools SNP 514482 514482 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 516371 516371 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 516624 516624 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 518544 518544 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C32%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold721 SAMTools SNP 518549 518549 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 528531 528531 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C145:99 scaffold721 SAMTools SNP 528975 528975 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C213:99 scaffold721 SAMTools SNP 531808 531808 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold721 SAMTools SNP 531847 531847 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold721 SAMTools SNP 531868 531868 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold721 SAMTools SNP 532465 532465 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold721 SAMTools SNP 533548 533548 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.52%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold721 SAMTools SNP 533557 533557 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold721 SAMTools SNP 536724 536724 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C30%2C0:57 scaffold721 SAMTools SNP 537844 537844 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold721 SAMTools SNP 542976 542976 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C175:99 scaffold721 SAMTools SNP 543025 543025 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold721 SAMTools SNP 544564 544564 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.3%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold721 SAMTools SNP 547921 547921 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C17%2C61%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.065%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold721 SAMTools SNP 548985 548985 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C5%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 549317 549317 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C5%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-08%2C5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 550554 550554 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C30%2C36%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C0.0058%2C1%2C9.6e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 550558 550558 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C31%2C36%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D6.6e-08%2C0.056%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold721 SAMTools SNP 550569 550569 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C23%2C0%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.071%2C5.6e-07%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold721 SAMTools SNP 551021 551021 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold721 SAMTools SNP 553657 553657 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold721 SAMTools SNP 554155 554155 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold721 SAMTools SNP 554505 554505 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C24%2C0:45 scaffold721 SAMTools SNP 557057 557057 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold721 SAMTools SNP 557501 557501 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0175%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold721 SAMTools SNP 557567 557567 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.43%2C0.042%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold721 SAMTools SNP 557639 557639 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.17%2C0.017%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C244:54 scaffold721 SAMTools SNP 557650 557650 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.057%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold721 SAMTools SNP 558235 558235 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 560045 560045 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 560054 560054 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C1%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.6%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold721 SAMTools SNP 561242 561242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold721 SAMTools SNP 561574 561574 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold721 SAMTools SNP 564225 564225 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold721 SAMTools SNP 564437 564437 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.57%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C225:71 scaffold721 SAMTools SNP 565176 565176 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C85:88 scaffold721 SAMTools SNP 565186 565186 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold721 SAMTools SNP 565532 565532 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold721 SAMTools SNP 565686 565686 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold721 SAMTools SNP 565688 565688 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold721 SAMTools SNP 565787 565787 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.59%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold721 SAMTools SNP 570149 570149 204 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C214:99 scaffold721 SAMTools SNP 570629 570629 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D26.6%3BPV4%3D1%2C5.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C64:57 scaffold721 SAMTools SNP 570904 570904 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C0.27%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold721 SAMTools SNP 571522 571522 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold721 SAMTools SNP 573572 573572 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold721 SAMTools SNP 583470 583470 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold721 SAMTools SNP 583482 583482 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.23%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold721 SAMTools SNP 583855 583855 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold721 SAMTools SNP 585223 585223 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold721 SAMTools SNP 585749 585749 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold721 SAMTools SNP 602485 602485 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C91:94 scaffold721 SAMTools SNP 602530 602530 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold721 SAMTools SNP 603529 603529 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold721 SAMTools SNP 603563 603563 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold721 SAMTools SNP 603809 603809 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold721 SAMTools SNP 604291 604291 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.49%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold721 SAMTools SNP 604871 604871 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C152:99 scaffold721 SAMTools SNP 604901 604901 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold721 SAMTools SNP 605339 605339 209 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C30%2C9%2C230%2C0%2C227:39 scaffold721 SAMTools SNP 605360 605360 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold721 SAMTools SNP 605538 605538 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold721 SAMTools SNP 605562 605562 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold721 SAMTools SNP 605573 605573 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold721 SAMTools SNP 606596 606596 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C38:41 scaffold721 SAMTools SNP 606638 606638 138 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C30%2C15%2C164%2C0%2C161:27 scaffold721 SAMTools SNP 607298 607298 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold721 SAMTools SNP 607304 607304 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold721 SAMTools SNP 607336 607336 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold721 SAMTools SNP 607337 607337 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold721 SAMTools SNP 621708 621708 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold721 SAMTools SNP 622671 622671 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C17%2C1%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.25%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold721 SAMTools SNP 623018 623018 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C6%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00016%2C4.3e-16%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold721 SAMTools SNP 623254 623254 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold721 SAMTools SNP 624193 624193 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold721 SAMTools SNP 624195 624195 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold721 SAMTools SNP 624339 624339 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold721 SAMTools SNP 624498 624498 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C7.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C134:31 scaffold721 SAMTools SNP 626846 626846 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C10%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.19%2C2.4e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold721 SAMTools SNP 627781 627781 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C9%2C3%3BMQ%3D49%3BFQ%3D199%3BPV4%3D0.013%2C0.00096%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold721 SAMTools SNP 628460 628460 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C5%3BMQ%3D49%3BFQ%3D87%3BPV4%3D1%2C0.39%2C0.018%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold721 SAMTools SNP 631345 631345 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C25%2C9%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D0.48%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold721 SAMTools SNP 635579 635579 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C549%2C49%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.0071%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 636109 636109 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 636158 636158 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 636185 636185 53.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C12%2C0:21 scaffold721 SAMTools SNP 636251 636251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 636287 636287 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C13%2C0%2C15%3BMQ%3D50%3BFQ%3D64%3BPV4%3D2.1e-08%2C2.6e-16%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold721 SAMTools SNP 636607 636607 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C20%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 636754 636754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D564%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C172%2C147%2C124%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-05%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 637712 637712 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D242%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C84%2C35%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.89%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 639907 639907 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C2%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.13%2C0.02%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold721 SAMTools SNP 649117 649117 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 649480 649480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 649568 649568 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold721 SAMTools SNP 652709 652709 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C66%2C10%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C0.31%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 654519 654519 181 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C19%2C12%2C11%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.8%2C0.0037%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold721 SAMTools SNP 660359 660359 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D572%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D246%2C50%2C241%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 660462 660462 18.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0006%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C9:12 scaffold721 SAMTools SNP 667641 667641 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold721 SAMTools SNP 671222 671222 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold721 SAMTools SNP 671246 671246 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold721 SAMTools SNP 674775 674775 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C50%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold721 SAMTools SNP 683046 683046 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C219:99 scaffold721 SAMTools SNP 683057 683057 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold721 SAMTools SNP 683091 683091 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 687117 687117 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C9%2C49%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 693983 693983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C123%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 695405 695405 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D799%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D369%2C29%2C361%2C25%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold721 SAMTools SNP 696242 696242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C67%2C238%3BMQ%3D22%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold721 SAMTools SNP 706368 706368 78.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C17%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C1%2C0:4 scaffold721 SAMTools SNP 707570 707570 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C5%3BMQ%3D49%3BFQ%3D171%3BPV4%3D1%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold721 SAMTools SNP 707685 707685 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C33%2C0:63 scaffold721 SAMTools SNP 708051 708051 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C5%3BMQ%3D49%3BFQ%3D-71%3BPV4%3D1%2C2.7e-09%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C44%2C0:85 scaffold721 SAMTools SNP 708145 708145 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C18%2C7%3BMQ%3D49%3BFQ%3D49%3BPV4%3D0.54%2C2.7e-33%2C0.18%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold721 SAMTools SNP 714115 714115 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 715176 715176 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold721 SAMTools SNP 715206 715206 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold721 SAMTools SNP 715253 715253 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold721 SAMTools SNP 715481 715481 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold721 SAMTools SNP 715517 715517 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold721 SAMTools SNP 716256 716256 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold721 SAMTools SNP 716590 716590 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold721 SAMTools SNP 716686 716686 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C6%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold721 SAMTools SNP 716707 716707 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.11%2C0.14%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold721 SAMTools SNP 716716 716716 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C5%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0095%2C0.49%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold721 SAMTools SNP 716740 716740 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold721 SAMTools SNP 716782 716782 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold721 SAMTools SNP 717024 717024 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold721 SAMTools SNP 717922 717922 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.66%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold721 SAMTools SNP 717971 717971 123 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C99%2C199%2C0%2C190:39 scaffold721 SAMTools SNP 719687 719687 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold721 SAMTools SNP 719746 719746 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold721 SAMTools SNP 721653 721653 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 5992 5992 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold722 SAMTools SNP 6076 6076 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold722 SAMTools SNP 10304 10304 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 11622 11622 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 11865 11865 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 12059 12059 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold722 SAMTools SNP 12076 12076 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold722 SAMTools SNP 12608 12608 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold722 SAMTools SNP 12629 12629 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 12653 12653 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 13751 13751 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 16324 16324 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 19192 19192 12.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold722 SAMTools SNP 19333 19333 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C154%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 20178 20178 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C30%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold722 SAMTools SNP 20289 20289 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold722 SAMTools SNP 20656 20656 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 20659 20659 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C13%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold722 SAMTools SNP 20699 20699 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C44%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold722 SAMTools SNP 22307 22307 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold722 SAMTools SNP 24999 24999 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 25026 25026 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C129%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 26306 26306 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D755%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C460%2C220%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 27286 27286 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D379%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold722 SAMTools SNP 29364 29364 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C11%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold722 SAMTools SNP 29640 29640 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold722 SAMTools SNP 30675 30675 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold722 SAMTools SNP 30731 30731 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C13%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold722 SAMTools SNP 31594 31594 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C23%2C34%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.0022%2C4e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold722 SAMTools SNP 37472 37472 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold722 SAMTools SNP 39710 39710 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold722 SAMTools SNP 41570 41570 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C233:99 scaffold722 SAMTools SNP 44730 44730 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold722 SAMTools SNP 45215 45215 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 47142 47142 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C27%2C0:45 scaffold722 SAMTools SNP 47475 47475 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold722 SAMTools SNP 48708 48708 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C2%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold722 SAMTools SNP 50074 50074 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold722 SAMTools SNP 58022 58022 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 71132 71132 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.07%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold722 SAMTools SNP 72283 72283 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold722 SAMTools SNP 72914 72914 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold722 SAMTools SNP 72983 72983 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold722 SAMTools SNP 73442 73442 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold722 SAMTools SNP 73460 73460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 74287 74287 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold722 SAMTools SNP 74696 74696 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.044%2C2.3e-09%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold722 SAMTools SNP 74706 74706 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold722 SAMTools SNP 75235 75235 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C32%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold722 SAMTools SNP 75366 75366 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold722 SAMTools SNP 76649 76649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D46%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold722 SAMTools SNP 77615 77615 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold722 SAMTools SNP 77652 77652 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold722 SAMTools SNP 77704 77704 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold722 SAMTools SNP 78239 78239 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C39%2C0:75 scaffold722 SAMTools SNP 78772 78772 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold722 SAMTools SNP 82077 82077 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold722 SAMTools SNP 82088 82088 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold722 SAMTools SNP 82452 82452 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold722 SAMTools SNP 82461 82461 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold722 SAMTools SNP 83261 83261 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C1%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold722 SAMTools SNP 83321 83321 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C11%3BMQ%3D50%3BFQ%3D-67%3BPV4%3D0.4%2C0.36%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C0:77 scaffold722 SAMTools SNP 83361 83361 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold722 SAMTools SNP 83777 83777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold722 SAMTools SNP 84301 84301 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.015%2C0.00038%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C157:99 scaffold722 SAMTools SNP 84311 84311 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C110:70 scaffold722 SAMTools SNP 84320 84320 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.13%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C192:56 scaffold722 SAMTools SNP 84323 84323 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.19%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C80:83 scaffold722 SAMTools SNP 84620 84620 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 84626 84626 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold722 SAMTools SNP 84650 84650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold722 SAMTools SNP 84906 84906 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 85254 85254 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold722 SAMTools SNP 85444 85444 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C54%2C0:99 scaffold722 SAMTools SNP 85592 85592 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold722 SAMTools SNP 92319 92319 14.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold722 SAMTools SNP 92764 92764 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold722 SAMTools SNP 92835 92835 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C184%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 94191 94191 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold722 SAMTools SNP 94194 94194 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C34%2C12%2C0%3BMQ%3D49%3BFQ%3D10.4%3BPV4%3D0.0037%2C1%2C0.055%2C5.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold722 SAMTools SNP 94445 94445 47.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold722 SAMTools SNP 97217 97217 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C24%2C0:45 scaffold722 SAMTools SNP 97322 97322 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D238%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C170%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.47%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 97743 97743 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C149%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 97756 97756 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 100309 100309 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C4%2C48%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold722 SAMTools SNP 100769 100769 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 102351 102351 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.018%2C1%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold722 SAMTools SNP 103230 103230 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C20%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold722 SAMTools SNP 104078 104078 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold722 SAMTools SNP 105151 105151 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C24%2C0%2C21%3BMQ%3D50%3BFQ%3D66%3BPV4%3D9e-08%2C1%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold722 SAMTools SNP 106556 106556 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.051%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold722 SAMTools SNP 106557 106557 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold722 SAMTools SNP 106566 106566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 106705 106705 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C151%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 107533 107533 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 109152 109152 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C0%2C23%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.00039%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold722 SAMTools SNP 109595 109595 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C63%2C0:99 scaffold722 SAMTools SNP 109937 109937 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C42%2C0:81 scaffold722 SAMTools SNP 110091 110091 112 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C15%2C0:27 scaffold722 SAMTools SNP 117254 117254 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C39%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold722 SAMTools SNP 117470 117470 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C12%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C72%2C0:99 scaffold722 SAMTools SNP 119197 119197 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C21%2C0:39 scaffold722 SAMTools SNP 119918 119918 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C42%2C0:81 scaffold722 SAMTools SNP 120160 120160 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C60%2C0:99 scaffold722 SAMTools SNP 120964 120964 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 121173 121173 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 121176 121176 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold722 SAMTools SNP 121595 121595 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold722 SAMTools SNP 121616 121616 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold722 SAMTools SNP 121828 121828 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.29%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold722 SAMTools SNP 122930 122930 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold722 SAMTools SNP 123263 123263 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 125497 125497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold722 SAMTools SNP 127856 127856 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 145738 145738 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold722 SAMTools SNP 163431 163431 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 172391 172391 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold722 SAMTools SNP 172394 172394 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold722 SAMTools SNP 173854 173854 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold722 SAMTools SNP 175669 175669 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold722 SAMTools SNP 175766 175766 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold722 SAMTools SNP 176748 176748 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold722 SAMTools SNP 177847 177847 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 177892 177892 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 180376 180376 14.2 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C23%2C2%2C35%2C0%2C32:31 scaffold722 SAMTools SNP 181812 181812 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold722 SAMTools SNP 185544 185544 48.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C12%2C0:21 scaffold722 SAMTools SNP 186446 186446 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D25%2C26%2C1%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.064%2C4.9e-06%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold722 SAMTools SNP 187966 187966 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C33%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold722 SAMTools SNP 188132 188132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 189980 189980 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 190735 190735 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold722 SAMTools SNP 190811 190811 49.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C15%2C0:27 scaffold722 SAMTools SNP 192441 192441 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C194%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold722 SAMTools SNP 194964 194964 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C66%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold722 SAMTools SNP 195042 195042 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C155:72 scaffold722 SAMTools SNP 200253 200253 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold722 SAMTools SNP 200298 200298 75.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-48%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C21%2C0:39 scaffold722 SAMTools SNP 200838 200838 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C24%2C0:45 scaffold722 SAMTools SNP 202952 202952 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold722 SAMTools SNP 212459 212459 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold722 SAMTools SNP 212750 212750 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold722 SAMTools SNP 213202 213202 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold722 SAMTools SNP 213661 213661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 213686 213686 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold722 SAMTools SNP 213801 213801 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold722 SAMTools SNP 214537 214537 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold722 SAMTools SNP 217689 217689 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold722 SAMTools SNP 218401 218401 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C39%2C0:75 scaffold722 SAMTools SNP 220955 220955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold722 SAMTools SNP 222524 222524 81 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold722 SAMTools SNP 222577 222577 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.7e-08%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold722 SAMTools SNP 223147 223147 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold722 SAMTools SNP 223634 223634 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold722 SAMTools SNP 223643 223643 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold722 SAMTools SNP 224212 224212 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold722 SAMTools SNP 224257 224257 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold722 SAMTools SNP 224868 224868 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.037%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C180:63 scaffold722 SAMTools SNP 225566 225566 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold722 SAMTools SNP 225816 225816 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold722 SAMTools SNP 230781 230781 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold722 SAMTools SNP 231150 231150 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold722 SAMTools SNP 231468 231468 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C160:31 scaffold722 SAMTools SNP 232843 232843 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 233443 233443 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 233965 233965 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold722 SAMTools SNP 234301 234301 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold722 SAMTools SNP 234310 234310 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 234443 234443 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold722 SAMTools SNP 234729 234729 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C5%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold722 SAMTools SNP 243275 243275 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold722 SAMTools SNP 246461 246461 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 246481 246481 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold722 SAMTools SNP 247148 247148 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.17%2C0.037%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C176:99 scaffold722 SAMTools SNP 250536 250536 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold722 SAMTools SNP 253930 253930 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D43%3BFQ%3D51%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C189:81 scaffold722 SAMTools SNP 257196 257196 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C147:36 scaffold722 SAMTools SNP 257611 257611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold722 SAMTools SNP 260470 260470 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold722 SAMTools SNP 260517 260517 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold722 SAMTools SNP 263381 263381 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 263390 263390 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 264015 264015 165 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C15%2C0:27 scaffold722 SAMTools SNP 267228 267228 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold722 SAMTools SNP 267276 267276 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold722 SAMTools SNP 267693 267693 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold722 SAMTools SNP 268363 268363 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold722 SAMTools SNP 280006 280006 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold722 SAMTools SNP 280306 280306 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C6%2C0%2C11%3BMQ%3D50%3BFQ%3D25%3BPV4%3D6.7e-08%2C9.5e-14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold722 SAMTools SNP 281741 281741 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C32%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold722 SAMTools SNP 282126 282126 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C43%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold722 SAMTools SNP 282157 282157 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C27%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold722 SAMTools SNP 282757 282757 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold722 SAMTools SNP 298596 298596 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold722 SAMTools SNP 298791 298791 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold722 SAMTools SNP 298844 298844 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold722 SAMTools SNP 316785 316785 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold723 SAMTools SNP 713 713 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold723 SAMTools SNP 19193 19193 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold723 SAMTools SNP 28042 28042 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C33%2C0:63 scaffold723 SAMTools SNP 28122 28122 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.21%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C102:99 scaffold723 SAMTools SNP 28612 28612 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D2%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C12:15 scaffold723 SAMTools SNP 28627 28627 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold723 SAMTools SNP 28633 28633 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold723 SAMTools SNP 28654 28654 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C215:51 scaffold723 SAMTools SNP 30814 30814 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C35%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C215:51 scaffold723 SAMTools SNP 30865 30865 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold723 SAMTools SNP 30889 30889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 32408 32408 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C91:94 scaffold723 SAMTools SNP 32483 32483 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold723 SAMTools SNP 33867 33867 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C1%2C22%3BMQ%3D43%3BFQ%3D225%3BPV4%3D1.2e-08%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold723 SAMTools SNP 33870 33870 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C9%2C3%3BMQ%3D46%3BFQ%3D185%3BPV4%3D4.2e-06%2C0.072%2C0.00027%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold723 SAMTools SNP 33885 33885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D40%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold723 SAMTools SNP 34608 34608 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D37%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C45%2C0:87 scaffold723 SAMTools SNP 34659 34659 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 34704 34704 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 34710 34710 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 43196 43196 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold723 SAMTools SNP 43256 43256 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold723 SAMTools SNP 44032 44032 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.019%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold723 SAMTools SNP 46740 46740 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold723 SAMTools SNP 47902 47902 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold723 SAMTools SNP 47939 47939 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold723 SAMTools SNP 48431 48431 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold723 SAMTools SNP 49504 49504 82.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C18%2C0:33 scaffold723 SAMTools SNP 49999 49999 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold723 SAMTools SNP 52494 52494 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C30%2C0:57 scaffold723 SAMTools SNP 52528 52528 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold723 SAMTools SNP 52563 52563 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C61:43 scaffold723 SAMTools SNP 67569 67569 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C42%2C0:81 scaffold723 SAMTools SNP 67902 67902 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold723 SAMTools SNP 68034 68034 3.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold723 SAMTools SNP 68259 68259 26.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold723 SAMTools SNP 69192 69192 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C8%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C6.3e-30%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold723 SAMTools SNP 69252 69252 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold723 SAMTools SNP 69612 69612 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C24%2C0:45 scaffold723 SAMTools SNP 70359 70359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold723 SAMTools SNP 70366 70366 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C75%2C0:99 scaffold723 SAMTools SNP 70485 70485 18 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold723 SAMTools SNP 70599 70599 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C27%2C0:51 scaffold723 SAMTools SNP 70845 70845 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C51%2C0:80 scaffold723 SAMTools SNP 72728 72728 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 72773 72773 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 86356 86356 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold723 SAMTools SNP 94457 94457 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D13.2%3BPV4%3D1%2C0.0046%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C213:42 scaffold723 SAMTools SNP 94747 94747 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 103325 103325 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold723 SAMTools SNP 109289 109289 193 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold723 SAMTools SNP 109319 109319 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C26:29 scaffold723 SAMTools SNP 109349 109349 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C0.23%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold723 SAMTools SNP 109544 109544 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0047%2C0.23%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C232:99 scaffold723 SAMTools SNP 109747 109747 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold723 SAMTools SNP 109801 109801 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold723 SAMTools SNP 109897 109897 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold723 SAMTools SNP 109933 109933 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C254:99 scaffold723 SAMTools SNP 109939 109939 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C161:99 scaffold723 SAMTools SNP 110228 110228 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold723 SAMTools SNP 110430 110430 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold723 SAMTools SNP 111377 111377 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold723 SAMTools SNP 111401 111401 226 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.3%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold723 SAMTools SNP 111929 111929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold723 SAMTools SNP 112000 112000 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold723 SAMTools SNP 112968 112968 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold723 SAMTools SNP 112983 112983 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold723 SAMTools SNP 113504 113504 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.18%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C127:99 scaffold723 SAMTools SNP 113534 113534 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C238:99 scaffold723 SAMTools SNP 113862 113862 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.29%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C240:99 scaffold723 SAMTools SNP 113907 113907 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.093%2C0.00019%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold723 SAMTools SNP 114183 114183 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold723 SAMTools SNP 114200 114200 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold723 SAMTools SNP 114750 114750 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 115400 115400 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 115492 115492 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold723 SAMTools SNP 115812 115812 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 115813 115813 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 116045 116045 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C46:49 scaffold723 SAMTools SNP 116054 116054 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold723 SAMTools SNP 116060 116060 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.25%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold723 SAMTools SNP 118687 118687 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 118991 118991 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 119051 119051 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 120046 120046 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 120560 120560 55.8 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold723 SAMTools SNP 120602 120602 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold723 SAMTools SNP 120632 120632 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 120643 120643 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 120650 120650 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold723 SAMTools SNP 121056 121056 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold723 SAMTools SNP 121110 121110 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 124808 124808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 125707 125707 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 125750 125750 16.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold723 SAMTools SNP 125831 125831 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold723 SAMTools SNP 125876 125876 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold723 SAMTools SNP 126388 126388 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C18%2C0:33 scaffold723 SAMTools SNP 128044 128044 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 128140 128140 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.014%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold723 SAMTools SNP 128155 128155 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold723 SAMTools SNP 128419 128419 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold723 SAMTools SNP 128420 128420 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.18%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold723 SAMTools SNP 129808 129808 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold723 SAMTools SNP 130381 130381 201 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C21%2C0:39 scaffold723 SAMTools SNP 131549 131549 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 132483 132483 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 132630 132630 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold723 SAMTools SNP 132907 132907 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold723 SAMTools SNP 133088 133088 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 134555 134555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 134567 134567 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 141109 141109 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold723 SAMTools SNP 145820 145820 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 149436 149436 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 167868 167868 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold723 SAMTools SNP 167903 167903 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold723 SAMTools SNP 168623 168623 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold723 SAMTools SNP 169252 169252 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold723 SAMTools SNP 169471 169471 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold723 SAMTools SNP 169582 169582 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C39%2C0:75 scaffold723 SAMTools SNP 169876 169876 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C15%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold723 SAMTools SNP 169922 169922 16.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold723 SAMTools SNP 170144 170144 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold723 SAMTools SNP 170774 170774 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold723 SAMTools SNP 170851 170851 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold723 SAMTools SNP 200850 200850 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold723 SAMTools SNP 200881 200881 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold723 SAMTools SNP 201169 201169 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 201183 201183 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C12%2C0:21 scaffold723 SAMTools SNP 214443 214443 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 234317 234317 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 235540 235540 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold723 SAMTools SNP 236547 236547 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 237735 237735 4.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold723 SAMTools SNP 238128 238128 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 238131 238131 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 238750 238750 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold723 SAMTools SNP 239586 239586 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 241509 241509 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold723 SAMTools SNP 241933 241933 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 243792 243792 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold723 SAMTools SNP 244130 244130 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold723 SAMTools SNP 244232 244232 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold723 SAMTools SNP 246125 246125 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 246950 246950 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0032%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0042%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C35:38 scaffold723 SAMTools SNP 247050 247050 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold723 SAMTools SNP 248306 248306 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 248948 248948 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold723 SAMTools SNP 248977 248977 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 249373 249373 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 249418 249418 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 250192 250192 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold723 SAMTools SNP 250981 250981 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold723 SAMTools SNP 255759 255759 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 256809 256809 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold723 SAMTools SNP 256813 256813 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold723 SAMTools SNP 257855 257855 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 257864 257864 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 260166 260166 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 260209 260209 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 260973 260973 42.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold723 SAMTools SNP 261044 261044 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 261084 261084 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold723 SAMTools SNP 261423 261423 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold723 SAMTools SNP 261954 261954 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 264194 264194 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold723 SAMTools SNP 264240 264240 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold723 SAMTools SNP 266439 266439 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold723 SAMTools SNP 267143 267143 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold723 SAMTools SNP 267236 267236 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold723 SAMTools SNP 285435 285435 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.014%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold723 SAMTools SNP 285823 285823 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4.7e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold723 SAMTools SNP 291991 291991 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold723 SAMTools SNP 292045 292045 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 294974 294974 210 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold723 SAMTools SNP 294992 294992 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold723 SAMTools SNP 296843 296843 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold723 SAMTools SNP 296867 296867 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold723 SAMTools SNP 297389 297389 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold723 SAMTools SNP 298725 298725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold723 SAMTools SNP 298749 298749 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold723 SAMTools SNP 298873 298873 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold723 SAMTools SNP 298888 298888 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold723 SAMTools SNP 343561 343561 37.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold723 SAMTools SNP 376555 376555 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold723 SAMTools SNP 376848 376848 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.19%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C164:99 scaffold723 SAMTools SNP 376873 376873 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C225:99 scaffold723 SAMTools SNP 378360 378360 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold723 SAMTools SNP 378520 378520 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C18%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold723 SAMTools SNP 388350 388350 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C3%3BMQ%3D47%3BFQ%3D14.2%3BPV4%3D0.5%2C0.035%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C167:43 scaffold723 SAMTools SNP 395819 395819 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.48%2C0.0024%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold723 SAMTools SNP 398486 398486 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold723 SAMTools SNP 405099 405099 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold723 SAMTools SNP 405138 405138 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold723 SAMTools SNP 406573 406573 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold723 SAMTools SNP 408073 408073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold723 SAMTools SNP 409712 409712 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold723 SAMTools SNP 409718 409718 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold723 SAMTools SNP 416801 416801 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold723 SAMTools SNP 417115 417115 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold724 SAMTools SNP 7014 7014 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 7036 7036 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 9647 9647 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 12099 12099 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 12113 12113 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold724 SAMTools SNP 12503 12503 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold724 SAMTools SNP 12525 12525 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.065%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold724 SAMTools SNP 17374 17374 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold724 SAMTools SNP 23271 23271 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C153:64 scaffold724 SAMTools SNP 23362 23362 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.19%2C3e-09%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C245:37 scaffold724 SAMTools SNP 23938 23938 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold724 SAMTools SNP 23953 23953 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold724 SAMTools SNP 24187 24187 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C18%2C0:33 scaffold724 SAMTools SNP 25563 25563 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 25714 25714 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold724 SAMTools SNP 26717 26717 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold724 SAMTools SNP 27413 27413 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 28109 28109 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 31938 31938 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 40149 40149 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold724 SAMTools SNP 41254 41254 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 43938 43938 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C21%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.16%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold724 SAMTools SNP 44230 44230 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C7%2C22%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.089%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold724 SAMTools SNP 44587 44587 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C251:70 scaffold724 SAMTools SNP 44604 44604 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold724 SAMTools SNP 44786 44786 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.071%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold724 SAMTools SNP 45594 45594 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 51371 51371 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 72031 72031 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 72887 72887 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 72969 72969 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold724 SAMTools SNP 75444 75444 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 75446 75446 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 93393 93393 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold724 SAMTools SNP 95105 95105 39.3 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C35%2C20%2C65%2C0%2C62:27 scaffold724 SAMTools SNP 95130 95130 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold724 SAMTools SNP 96300 96300 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold724 SAMTools SNP 133375 133375 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 133415 133415 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold724 SAMTools SNP 134755 134755 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold724 SAMTools SNP 134756 134756 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold724 SAMTools SNP 134788 134788 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold724 SAMTools SNP 136060 136060 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C185:99 scaffold724 SAMTools SNP 136583 136583 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.58%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold724 SAMTools SNP 136657 136657 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.044%2C5.3e-05%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold724 SAMTools SNP 138877 138877 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0057%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C132:80 scaffold724 SAMTools SNP 139377 139377 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.083%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold724 SAMTools SNP 147107 147107 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 154165 154165 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 165953 165953 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold724 SAMTools SNP 171088 171088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 173171 173171 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 173886 173886 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 174301 174301 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 174340 174340 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold724 SAMTools SNP 174364 174364 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold724 SAMTools SNP 174396 174396 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 174412 174412 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 175090 175090 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 178286 178286 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 179273 179273 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C3.4e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold724 SAMTools SNP 179353 179353 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold724 SAMTools SNP 179820 179820 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold724 SAMTools SNP 179832 179832 32 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.29%2C0.064%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C160:65 scaffold724 SAMTools SNP 180951 180951 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C6%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold724 SAMTools SNP 180954 180954 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold724 SAMTools SNP 181254 181254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold724 SAMTools SNP 181263 181263 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.37%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold724 SAMTools SNP 181893 181893 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 183335 183335 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.49%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold724 SAMTools SNP 183772 183772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold724 SAMTools SNP 183782 183782 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C1%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.15%2C0.0071%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold724 SAMTools SNP 184357 184357 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold724 SAMTools SNP 184363 184363 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold724 SAMTools SNP 186955 186955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold724 SAMTools SNP 186966 186966 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold724 SAMTools SNP 186982 186982 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold724 SAMTools SNP 196584 196584 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold724 SAMTools SNP 198226 198226 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold724 SAMTools SNP 198860 198860 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold724 SAMTools SNP 198919 198919 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.55%2C1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold724 SAMTools SNP 199363 199363 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.26%2C1.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold724 SAMTools SNP 199479 199479 12.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.12%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C11:14 scaffold724 SAMTools SNP 200204 200204 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold724 SAMTools SNP 200379 200379 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.07%2C3.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C237:41 scaffold724 SAMTools SNP 211962 211962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold724 SAMTools SNP 212880 212880 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C24%2C0:45 scaffold724 SAMTools SNP 212940 212940 46.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C21%2C0:39 scaffold724 SAMTools SNP 213423 213423 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.19%2C6.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C168:54 scaffold724 SAMTools SNP 213816 213816 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold724 SAMTools SNP 221689 221689 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold724 SAMTools SNP 222985 222985 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold724 SAMTools SNP 286758 286758 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold726 SAMTools SNP 18515 18515 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold726 SAMTools SNP 22397 22397 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 22407 22407 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 24473 24473 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 25181 25181 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 27113 27113 20.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold726 SAMTools SNP 27828 27828 5.44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold726 SAMTools SNP 27904 27904 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 27942 27942 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 29404 29404 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold726 SAMTools SNP 29851 29851 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C39%2C0:75 scaffold726 SAMTools SNP 31677 31677 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold726 SAMTools SNP 32432 32432 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C55%2C0%3BMQ%3D50%3BFQ%3D-146%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C119%2C0:99 scaffold726 SAMTools SNP 33513 33513 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C3%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold726 SAMTools SNP 35112 35112 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C43%2C46%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 35147 35147 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C30%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.0026%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 35156 35156 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C30%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold726 SAMTools SNP 35397 35397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C78%2C3%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 35466 35466 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C45%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 35474 35474 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C51%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 37167 37167 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 37751 37751 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold726 SAMTools SNP 37775 37775 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold726 SAMTools SNP 38048 38048 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 48043 48043 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold726 SAMTools SNP 48071 48071 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold726 SAMTools SNP 48464 48464 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 52006 52006 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold726 SAMTools SNP 52036 52036 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold726 SAMTools SNP 52131 52131 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.74%3BPV4%3D1%2C0.023%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C41:39 scaffold726 SAMTools SNP 52234 52234 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 52249 52249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 53662 53662 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold726 SAMTools SNP 57043 57043 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold726 SAMTools SNP 57596 57596 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold726 SAMTools SNP 57974 57974 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold726 SAMTools SNP 57986 57986 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold726 SAMTools SNP 59287 59287 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold726 SAMTools SNP 59794 59794 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.3%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C191:99 scaffold726 SAMTools SNP 59800 59800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold726 SAMTools SNP 59843 59843 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold726 SAMTools SNP 60253 60253 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C164:74 scaffold726 SAMTools SNP 60286 60286 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold726 SAMTools SNP 60340 60340 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D46%3BFQ%3D33%3BPV4%3D0.4%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C60:63 scaffold726 SAMTools SNP 62759 62759 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold726 SAMTools SNP 63136 63136 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.92%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C50:33 scaffold726 SAMTools SNP 77953 77953 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold726 SAMTools SNP 77975 77975 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold726 SAMTools SNP 77978 77978 31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.42%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold726 SAMTools SNP 78224 78224 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.12%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold726 SAMTools SNP 78239 78239 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C5%2C6%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.005%2C0.0012%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold726 SAMTools SNP 78284 78284 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 79029 79029 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C11%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 79051 79051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C11%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 79096 79096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold726 SAMTools SNP 79246 79246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C49%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold726 SAMTools SNP 79883 79883 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.054%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold726 SAMTools SNP 79901 79901 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold726 SAMTools SNP 79922 79922 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold726 SAMTools SNP 79946 79946 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold726 SAMTools SNP 79967 79967 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C27%2C0:51 scaffold726 SAMTools SNP 80462 80462 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold726 SAMTools SNP 80491 80491 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold726 SAMTools SNP 88734 88734 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C154:99 scaffold726 SAMTools SNP 93891 93891 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.37%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold726 SAMTools SNP 97382 97382 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold726 SAMTools SNP 97853 97853 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C113:99 scaffold726 SAMTools SNP 101068 101068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold726 SAMTools SNP 101073 101073 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.58%2C0.46%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold726 SAMTools SNP 101282 101282 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C11%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.033%2C2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold726 SAMTools SNP 101456 101456 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C22%2C63%2C10%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.17%2C2.4e-122%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold726 SAMTools SNP 101513 101513 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold726 SAMTools SNP 101594 101594 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C61%2C0%2C60%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1.1e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold726 SAMTools SNP 106032 106032 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold726 SAMTools SNP 106083 106083 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C42%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 108095 108095 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C76%2C42%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold726 SAMTools SNP 108134 108134 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C25%2C102%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0029%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 108140 108140 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C37%2C27%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0087%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 108497 108497 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold726 SAMTools SNP 108548 108548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold726 SAMTools SNP 109771 109771 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C122%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold726 SAMTools SNP 110353 110353 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C52%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 111398 111398 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold726 SAMTools SNP 112776 112776 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C21%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.36%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C244:99 scaffold726 SAMTools SNP 113668 113668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold726 SAMTools SNP 113706 113706 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold726 SAMTools SNP 114537 114537 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 114847 114847 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 114935 114935 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold726 SAMTools SNP 115817 115817 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold726 SAMTools SNP 116190 116190 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 116871 116871 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 116904 116904 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold726 SAMTools SNP 117670 117670 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.43%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold726 SAMTools SNP 117672 117672 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C69:72 scaffold726 SAMTools SNP 119440 119440 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold726 SAMTools SNP 119485 119485 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold726 SAMTools SNP 120104 120104 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 122014 122014 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold726 SAMTools SNP 122032 122032 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C124:99 scaffold726 SAMTools SNP 122444 122444 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold726 SAMTools SNP 124039 124039 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 124361 124361 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold726 SAMTools SNP 127196 127196 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold726 SAMTools SNP 127380 127380 29.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C21%2C0:38 scaffold726 SAMTools SNP 127673 127673 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C27%3BMQ%3D49%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold726 SAMTools SNP 127705 127705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D49%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold726 SAMTools SNP 128416 128416 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold726 SAMTools SNP 129863 129863 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold726 SAMTools SNP 130154 130154 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold726 SAMTools SNP 131221 131221 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold726 SAMTools SNP 131588 131588 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold726 SAMTools SNP 135419 135419 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C27%2C0:51 scaffold726 SAMTools SNP 136047 136047 155 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C39%2C0:75 scaffold726 SAMTools SNP 136282 136282 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C25%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C96%2C0:99 scaffold726 SAMTools SNP 136682 136682 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C126%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C255%2C0:99 scaffold726 SAMTools SNP 136772 136772 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C24%2C1%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-16%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 137554 137554 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C145%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold726 SAMTools SNP 137590 137590 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold726 SAMTools SNP 137704 137704 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold726 SAMTools SNP 138826 138826 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold726 SAMTools SNP 150076 150076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold726 SAMTools SNP 150115 150115 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C253:99 scaffold726 SAMTools SNP 153063 153063 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C22%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold726 SAMTools SNP 153498 153498 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C30%2C0:57 scaffold726 SAMTools SNP 153501 153501 94.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold726 SAMTools SNP 153868 153868 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C5%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 154087 154087 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C2%2C45%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.42%2C2.7e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold726 SAMTools SNP 154129 154129 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C12%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold726 SAMTools SNP 155989 155989 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C4%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 156064 156064 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold726 SAMTools SNP 156441 156441 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold726 SAMTools SNP 157017 157017 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold726 SAMTools SNP 157080 157080 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold726 SAMTools SNP 157900 157900 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold726 SAMTools SNP 158551 158551 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.31%2C0.028%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold726 SAMTools SNP 158590 158590 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C4%2C4%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.02%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold726 SAMTools SNP 158596 158596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 158907 158907 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C243:99 scaffold726 SAMTools SNP 158922 158922 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.27%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold726 SAMTools SNP 158937 158937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold726 SAMTools SNP 159577 159577 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold726 SAMTools SNP 159596 159596 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold726 SAMTools SNP 159892 159892 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold726 SAMTools SNP 159955 159955 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold726 SAMTools SNP 159970 159970 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold726 SAMTools SNP 160395 160395 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold726 SAMTools SNP 160398 160398 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold726 SAMTools SNP 160440 160440 116 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C26%2C14%2C143%2C0%2C140:21 scaffold726 SAMTools SNP 160506 160506 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.00051%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold726 SAMTools SNP 161011 161011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C10%2C28%2C2%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.19%2C0.46%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 161026 161026 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C15%2C44%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.17%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 161143 161143 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C5%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.47%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 161609 161609 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 161999 161999 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold726 SAMTools SNP 162049 162049 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold726 SAMTools SNP 162102 162102 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C7%2C8%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.52%2C1.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold726 SAMTools SNP 163238 163238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C12%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold726 SAMTools SNP 165238 165238 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold726 SAMTools SNP 165259 165259 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold726 SAMTools SNP 165284 165284 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.55%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold726 SAMTools SNP 165611 165611 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C6.6e-08%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 165650 165650 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 175787 175787 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold726 SAMTools SNP 177296 177296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold726 SAMTools SNP 177828 177828 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C20%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.1e-05%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 178685 178685 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold726 SAMTools SNP 178742 178742 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold726 SAMTools SNP 178817 178817 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold726 SAMTools SNP 179215 179215 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C232:99 scaffold726 SAMTools SNP 179561 179561 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C3%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.35%2C0.0089%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold726 SAMTools SNP 179576 179576 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold726 SAMTools SNP 179582 179582 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.13%2C0.03%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold726 SAMTools SNP 180016 180016 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.51%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold726 SAMTools SNP 180500 180500 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C35%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold726 SAMTools SNP 180821 180821 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold726 SAMTools SNP 180908 180908 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold726 SAMTools SNP 180911 180911 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold726 SAMTools SNP 181422 181422 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.22%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold726 SAMTools SNP 181436 181436 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold726 SAMTools SNP 182044 182044 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C22%2C3%2C2%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.1%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold726 SAMTools SNP 182113 182113 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.53%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold726 SAMTools SNP 182929 182929 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C2%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold726 SAMTools SNP 183299 183299 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C50%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold726 SAMTools SNP 183608 183608 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C33%2C0:63 scaffold726 SAMTools SNP 183784 183784 118 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C48:51 scaffold726 SAMTools SNP 183911 183911 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold726 SAMTools SNP 184513 184513 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C0%2C48%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C3.5e-46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C252:99 scaffold726 SAMTools SNP 185616 185616 15.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold726 SAMTools SNP 185761 185761 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C36%2C0:69 scaffold726 SAMTools SNP 185953 185953 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C3%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C223%2C0:99 scaffold726 SAMTools SNP 186006 186006 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C255%2C0:99 scaffold726 SAMTools SNP 186304 186304 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C108%2C0:99 scaffold726 SAMTools SNP 186356 186356 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C13%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C92:95 scaffold726 SAMTools SNP 187512 187512 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C132:46 scaffold726 SAMTools SNP 196654 196654 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold726 SAMTools SNP 201146 201146 10.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold726 SAMTools SNP 201431 201431 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C3%2C95%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.051%2C4.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 202153 202153 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C52%2C4%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C0.41%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 202166 202166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C82%2C1%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold726 SAMTools SNP 202477 202477 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold726 SAMTools SNP 202541 202541 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C17%2C77%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1.3e-05%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold726 SAMTools SNP 204078 204078 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.3%3BPV4%3D1%2C0.046%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C41:43 scaffold726 SAMTools SNP 204088 204088 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold728 SAMTools SNP 4535 4535 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold728 SAMTools SNP 4567 4567 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold728 SAMTools SNP 4573 4573 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 20639 20639 79.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D33%3BFQ%3D-29%3BPV4%3D1%2C0.22%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C2%2C0:5 scaffold728 SAMTools SNP 20641 20641 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D42%3BFQ%3D61%3BPV4%3D1%2C0.31%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C179:91 scaffold728 SAMTools SNP 21360 21360 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C14%3BMQ%3D47%3BFQ%3D146%3BPV4%3D1%2C0.0013%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C225:99 scaffold728 SAMTools SNP 21513 21513 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C13%3BMQ%3D48%3BFQ%3D153%3BPV4%3D1%2C1%2C0.0037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C247:99 scaffold728 SAMTools SNP 21534 21534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold728 SAMTools SNP 21678 21678 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold728 SAMTools SNP 21920 21920 100 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C30%2C0:57 scaffold728 SAMTools SNP 21990 21990 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold728 SAMTools SNP 22014 22014 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold728 SAMTools SNP 22957 22957 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold728 SAMTools SNP 24039 24039 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C24:27 scaffold728 SAMTools SNP 24045 24045 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D3.88%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C29:32 scaffold728 SAMTools SNP 24153 24153 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 24180 24180 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 26710 26710 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold728 SAMTools SNP 26713 26713 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold728 SAMTools SNP 26742 26742 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 26827 26827 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold728 SAMTools SNP 27910 27910 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 27955 27955 28.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold728 SAMTools SNP 27980 27980 61.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C21%2C0:39 scaffold728 SAMTools SNP 28042 28042 158 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.01%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C174:99 scaffold728 SAMTools SNP 28078 28078 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.00023%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C235:99 scaffold728 SAMTools SNP 28085 28085 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.00012%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C235:99 scaffold728 SAMTools SNP 28992 28992 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold728 SAMTools SNP 29442 29442 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.16%2C0.0096%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold728 SAMTools SNP 29502 29502 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.32%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold728 SAMTools SNP 29747 29747 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 29849 29849 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold728 SAMTools SNP 29947 29947 5.44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold728 SAMTools SNP 30312 30312 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 30454 30454 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 30628 30628 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0027%2C1.5e-06%2C1%2C2.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold728 SAMTools SNP 30631 30631 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.029%2C0.0058%2C1%2C3.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold728 SAMTools SNP 31219 31219 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.37%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold728 SAMTools SNP 31876 31876 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C152:85 scaffold728 SAMTools SNP 31888 31888 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold728 SAMTools SNP 32234 32234 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.16%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold728 SAMTools SNP 32563 32563 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold728 SAMTools SNP 32979 32979 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C9%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold728 SAMTools SNP 33131 33131 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold728 SAMTools SNP 33194 33194 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold728 SAMTools SNP 33320 33320 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.23%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C250:99 scaffold728 SAMTools SNP 33326 33326 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.2%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C146:99 scaffold728 SAMTools SNP 33572 33572 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C0.047%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C96:99 scaffold728 SAMTools SNP 33608 33608 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold728 SAMTools SNP 34028 34028 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold728 SAMTools SNP 34085 34085 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold728 SAMTools SNP 34240 34240 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold728 SAMTools SNP 35384 35384 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.62%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold728 SAMTools SNP 35399 35399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold728 SAMTools SNP 35476 35476 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C26%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 35798 35798 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C38%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold728 SAMTools SNP 36657 36657 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold728 SAMTools SNP 36709 36709 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 36947 36947 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold728 SAMTools SNP 37040 37040 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold728 SAMTools SNP 37061 37061 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 37312 37312 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 37423 37423 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 38034 38034 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold728 SAMTools SNP 38713 38713 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold728 SAMTools SNP 39054 39054 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold728 SAMTools SNP 39732 39732 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold728 SAMTools SNP 39993 39993 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 40286 40286 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold728 SAMTools SNP 40297 40297 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold728 SAMTools SNP 40363 40363 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold728 SAMTools SNP 40889 40889 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 40970 40970 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 41631 41631 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.093%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold728 SAMTools SNP 41632 41632 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C104:40 scaffold728 SAMTools SNP 41941 41941 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold728 SAMTools SNP 42399 42399 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 42790 42790 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 42799 42799 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 43526 43526 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.38%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold728 SAMTools SNP 43544 43544 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold728 SAMTools SNP 43576 43576 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C149:74 scaffold728 SAMTools SNP 44138 44138 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold728 SAMTools SNP 44149 44149 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold728 SAMTools SNP 44185 44185 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold728 SAMTools SNP 44214 44214 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold728 SAMTools SNP 44561 44561 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold728 SAMTools SNP 44707 44707 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold728 SAMTools SNP 44739 44739 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.32%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold728 SAMTools SNP 45109 45109 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold728 SAMTools SNP 45445 45445 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 45454 45454 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 45600 45600 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold728 SAMTools SNP 45604 45604 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold728 SAMTools SNP 46136 46136 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold728 SAMTools SNP 46157 46157 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold728 SAMTools SNP 46241 46241 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold728 SAMTools SNP 46256 46256 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold728 SAMTools SNP 51874 51874 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 52308 52308 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 52635 52635 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 53470 53470 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 53582 53582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold728 SAMTools SNP 53911 53911 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold728 SAMTools SNP 54547 54547 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold728 SAMTools SNP 54559 54559 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold728 SAMTools SNP 54978 54978 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 55282 55282 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold728 SAMTools SNP 55341 55341 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold728 SAMTools SNP 57863 57863 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold728 SAMTools SNP 58240 58240 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold728 SAMTools SNP 58741 58741 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0145%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C35:38 scaffold728 SAMTools SNP 58846 58846 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C38:41 scaffold728 SAMTools SNP 58876 58876 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold728 SAMTools SNP 59230 59230 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 59332 59332 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold728 SAMTools SNP 59579 59579 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold728 SAMTools SNP 61386 61386 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold728 SAMTools SNP 61673 61673 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold728 SAMTools SNP 61913 61913 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 61943 61943 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 63858 63858 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold728 SAMTools SNP 64199 64199 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.3%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold728 SAMTools SNP 64220 64220 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold728 SAMTools SNP 65754 65754 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold728 SAMTools SNP 65903 65903 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold728 SAMTools SNP 66076 66076 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C9%2C3%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.6%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold728 SAMTools SNP 66103 66103 118 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.64%2C0.21%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold728 SAMTools SNP 66144 66144 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.55%2C0.00033%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold728 SAMTools SNP 66166 66166 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 66864 66864 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C227:99 scaffold728 SAMTools SNP 67096 67096 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.47%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C206:99 scaffold728 SAMTools SNP 67157 67157 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold728 SAMTools SNP 67187 67187 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 72540 72540 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold728 SAMTools SNP 74302 74302 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C6%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C126%2C0:99 scaffold728 SAMTools SNP 74337 74337 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C6%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold728 SAMTools SNP 76128 76128 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C6%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 76218 76218 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 76335 76335 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 76400 76400 168 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.02%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold728 SAMTools SNP 76406 76406 28 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.029%2C1.1e-19%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold728 SAMTools SNP 78977 78977 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold728 SAMTools SNP 78978 78978 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold728 SAMTools SNP 79136 79136 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold728 SAMTools SNP 83215 83215 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold728 SAMTools SNP 83634 83634 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold728 SAMTools SNP 84763 84763 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold728 SAMTools SNP 84958 84958 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.41%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold728 SAMTools SNP 84970 84970 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C156:84 scaffold728 SAMTools SNP 84974 84974 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.11%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold728 SAMTools SNP 85267 85267 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C7%3BMQ%3D48%3BFQ%3D128%3BPV4%3D0.021%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C185:99 scaffold728 SAMTools SNP 91576 91576 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold728 SAMTools SNP 91978 91978 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C78%2C0:99 scaffold728 SAMTools SNP 92788 92788 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold728 SAMTools SNP 92878 92878 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C3%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C144%2C0:99 scaffold728 SAMTools SNP 93096 93096 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold728 SAMTools SNP 93530 93530 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 93671 93671 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C45%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold728 SAMTools SNP 94937 94937 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C51%2C0:99 scaffold728 SAMTools SNP 98142 98142 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold728 SAMTools SNP 98172 98172 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C21%2C8%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C4.6e-45%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold728 SAMTools SNP 98226 98226 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold728 SAMTools SNP 98617 98617 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold728 SAMTools SNP 98662 98662 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold728 SAMTools SNP 99156 99156 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold728 SAMTools SNP 102500 102500 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C6%2C9%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.3%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold728 SAMTools SNP 102645 102645 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C46%2C0%2C28%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.53%2C2.7e-20%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold728 SAMTools SNP 103136 103136 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C48%2C0:93 scaffold728 SAMTools SNP 104073 104073 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C17%3BMQ%3D50%3BFQ%3D82.6%3BPV4%3D0.073%2C3.1e-15%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C120:99 scaffold728 SAMTools SNP 104637 104637 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C7%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.39%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold728 SAMTools SNP 107014 107014 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C7.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold728 SAMTools SNP 107149 107149 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.27%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold728 SAMTools SNP 107218 107218 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C34%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 107925 107925 56 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C20%2C7%2C16%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C2.3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold728 SAMTools SNP 108169 108169 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C129%2C0:99 scaffold728 SAMTools SNP 113957 113957 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C87%2C0:99 scaffold728 SAMTools SNP 114191 114191 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C140%2C57%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold728 SAMTools SNP 114257 114257 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C11%2C76%2C26%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.063%2C1%2C0.095%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 114411 114411 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C92%2C49%2C48%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.9%2C0.012%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 115281 115281 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold728 SAMTools SNP 116206 116206 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold728 SAMTools SNP 116220 116220 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold728 SAMTools SNP 131547 131547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C37%3BMQ%3D49%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold728 SAMTools SNP 131607 131607 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C28%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold728 SAMTools SNP 133564 133564 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C17%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 133594 133594 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C47%2C17%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 134260 134260 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C5%2C31%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 134598 134598 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C50%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold728 SAMTools SNP 134736 134736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C25%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00039%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 141996 141996 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C39%2C0:75 scaffold728 SAMTools SNP 164829 164829 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold728 SAMTools SNP 174890 174890 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold728 SAMTools SNP 177819 177819 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0025%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold728 SAMTools SNP 188739 188739 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold728 SAMTools SNP 189205 189205 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold728 SAMTools SNP 190571 190571 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold728 SAMTools SNP 197670 197670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C18%2C206%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 197721 197721 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C17%2C121%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 199540 199540 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C33%2C33%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1.3e-05%2C1.9e-10%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold728 SAMTools SNP 200641 200641 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C79%2C36%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D4.5e-19%2C1.2e-22%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold728 SAMTools SNP 203323 203323 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C30%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C1%2C1%2C2.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 203326 203326 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C30%2C24%2C4%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.15%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold728 SAMTools SNP 204034 204034 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C43%2C5%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 204435 204435 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C46%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C193%2C0:99 scaffold728 SAMTools SNP 205067 205067 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C66%2C13%2C17%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.18%2C1.5e-107%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold728 SAMTools SNP 205200 205200 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C0%2C13%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.17%2C1.7e-23%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold728 SAMTools SNP 248668 248668 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C86%2C54%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C5.1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 248954 248954 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1072%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D363%2C129%2C433%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold728 SAMTools SNP 262674 262674 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold728 SAMTools SNP 262717 262717 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 262871 262871 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 263510 263510 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.38%2C0.025%2C1%2C9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C219:99 scaffold728 SAMTools SNP 263527 263527 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C219:99 scaffold728 SAMTools SNP 264102 264102 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 274152 274152 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 274211 274211 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D34%3BFQ%3D41%3BPV4%3D1%2C0.27%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C103:71 scaffold728 SAMTools SNP 274236 274236 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C33%2C0:63 scaffold728 SAMTools SNP 274564 274564 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D46%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C42%2C0:81 scaffold728 SAMTools SNP 274646 274646 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C1%3BMQ%3D45%3BFQ%3D7.8%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold728 SAMTools SNP 274691 274691 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C18%3BMQ%3D42%3BFQ%3D77.9%3BPV4%3D0.31%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C123:99 scaffold728 SAMTools SNP 276045 276045 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold728 SAMTools SNP 276549 276549 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 298109 298109 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C72%2C0:99 scaffold728 SAMTools SNP 299039 299039 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C246:69 scaffold728 SAMTools SNP 300280 300280 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold728 SAMTools SNP 300370 300370 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold728 SAMTools SNP 300396 300396 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold728 SAMTools SNP 300713 300713 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold728 SAMTools SNP 300736 300736 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold728 SAMTools SNP 300818 300818 73.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold728 SAMTools SNP 300950 300950 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.54%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold728 SAMTools SNP 300992 300992 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C229:99 scaffold728 SAMTools SNP 300995 300995 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold728 SAMTools SNP 301718 301718 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold728 SAMTools SNP 334207 334207 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold728 SAMTools SNP 350781 350781 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold728 SAMTools SNP 350850 350850 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C12%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold728 SAMTools SNP 366640 366640 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold728 SAMTools SNP 369169 369169 8.44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold728 SAMTools SNP 402612 402612 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold728 SAMTools SNP 433538 433538 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold728 SAMTools SNP 433732 433732 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C80:43 scaffold728 SAMTools SNP 434905 434905 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00013%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold728 SAMTools SNP 470448 470448 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold730 SAMTools SNP 2946 2946 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 3984 3984 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold730 SAMTools SNP 4857 4857 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold730 SAMTools SNP 5089 5089 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold730 SAMTools SNP 28097 28097 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C8%2C0%3BMQ%3D30%3BFQ%3D31%3BPV4%3D0.079%2C0.00015%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C79:61 scaffold730 SAMTools SNP 29132 29132 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C3%3BMQ%3D23%3BFQ%3D10.3%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C37:40 scaffold730 SAMTools SNP 29397 29397 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold730 SAMTools SNP 115135 115135 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold730 SAMTools SNP 115576 115576 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold730 SAMTools SNP 115653 115653 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C18%2C0:33 scaffold730 SAMTools SNP 117686 117686 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.27%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C80:55 scaffold730 SAMTools SNP 118321 118321 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold730 SAMTools SNP 118799 118799 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold730 SAMTools SNP 119113 119113 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold730 SAMTools SNP 119189 119189 33.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold730 SAMTools SNP 119522 119522 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C154:99 scaffold730 SAMTools SNP 119543 119543 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold730 SAMTools SNP 119567 119567 106 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold730 SAMTools SNP 119749 119749 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold730 SAMTools SNP 119751 119751 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold730 SAMTools SNP 121642 121642 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 121663 121663 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold730 SAMTools SNP 122992 122992 70 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0263%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C35:38 scaffold730 SAMTools SNP 123199 123199 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold730 SAMTools SNP 123215 123215 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 123239 123239 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 135521 135521 51.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold730 SAMTools SNP 137221 137221 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 137234 137234 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 152844 152844 92 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold730 SAMTools SNP 153161 153161 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C54%2C0:99 scaffold730 SAMTools SNP 153910 153910 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold730 SAMTools SNP 153930 153930 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold730 SAMTools SNP 154383 154383 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold730 SAMTools SNP 157414 157414 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 159200 159200 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold730 SAMTools SNP 159210 159210 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold730 SAMTools SNP 159837 159837 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 160100 160100 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold730 SAMTools SNP 161058 161058 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 161513 161513 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold730 SAMTools SNP 161523 161523 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C0.064%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold730 SAMTools SNP 161830 161830 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.041%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold730 SAMTools SNP 162201 162201 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold730 SAMTools SNP 162210 162210 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold730 SAMTools SNP 163710 163710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold730 SAMTools SNP 163722 163722 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold730 SAMTools SNP 163938 163938 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold730 SAMTools SNP 163951 163951 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.31%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold730 SAMTools SNP 164066 164066 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C72%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 166494 166494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C119%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 166696 166696 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold730 SAMTools SNP 166715 166715 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold730 SAMTools SNP 167363 167363 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold730 SAMTools SNP 167425 167425 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold730 SAMTools SNP 168876 168876 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold730 SAMTools SNP 168881 168881 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold730 SAMTools SNP 173534 173534 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D41%3BFQ%3D-39%3BPV4%3D1%2C5.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold730 SAMTools SNP 175001 175001 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold730 SAMTools SNP 175048 175048 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold730 SAMTools SNP 175273 175273 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold730 SAMTools SNP 176309 176309 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold730 SAMTools SNP 176360 176360 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold730 SAMTools SNP 185261 185261 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold730 SAMTools SNP 216789 216789 117 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold730 SAMTools SNP 216847 216847 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C197:99 scaffold730 SAMTools SNP 231242 231242 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold730 SAMTools SNP 247150 247150 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold730 SAMTools SNP 247158 247158 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold730 SAMTools SNP 247185 247185 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 258775 258775 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C19%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold730 SAMTools SNP 258786 258786 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C28%2C8%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.00024%2C3.2e-07%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold730 SAMTools SNP 259679 259679 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C36%2C32%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0057%2C3e-27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 259799 259799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C100%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 260242 260242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C18%2C151%2C123%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-11%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 260287 260287 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D711%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C19%2C367%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.1e-07%2C0.44%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 260993 260993 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D733%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D410%2C109%2C193%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.4e-05%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 261113 261113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D535%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C95%3BMQ%3D50%3BFQ%3D-237%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C210%2C0:99 scaffold730 SAMTools SNP 261131 261131 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C122%2C2%2C12%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0099%2C0.00042%2C1%2C4.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C153:37 scaffold730 SAMTools SNP 261474 261474 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C27%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.0075;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold730 SAMTools SNP 261513 261513 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold730 SAMTools SNP 261660 261660 26.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold730 SAMTools SNP 262020 262020 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C255%2C0:99 scaffold730 SAMTools SNP 268886 268886 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D27%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold730 SAMTools SNP 269820 269820 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1572%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1180%2C30%2C360%2C0%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D0.00062%2C4e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold730 SAMTools SNP 269835 269835 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1604%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1206%2C15%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.013%2C1%2C0.46%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 269927 269927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1843%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C358%2C110%2C1208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 271128 271128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1388%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C176%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 271380 271380 26 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold730 SAMTools SNP 272605 272605 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold730 SAMTools SNP 273256 273256 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold730 SAMTools SNP 273283 273283 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 345511 345511 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold730 SAMTools SNP 345519 345519 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold730 SAMTools SNP 345587 345587 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C18%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold730 SAMTools SNP 345593 345593 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold730 SAMTools SNP 349588 349588 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C12%2C0:21 scaffold730 SAMTools SNP 349630 349630 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold730 SAMTools SNP 349648 349648 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C22%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold730 SAMTools SNP 350636 350636 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 350690 350690 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 350723 350723 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 351212 351212 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold730 SAMTools SNP 351942 351942 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold730 SAMTools SNP 352230 352230 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 354816 354816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C72%3BMQ%3D46%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 355241 355241 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C84%2C29%3BMQ%3D47%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 355274 355274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C40%2C18%3BMQ%3D49%3BFQ%3D-172%3BPV4%3D1%2C1%2C0.41%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C145%2C0:99 scaffold730 SAMTools SNP 355329 355329 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C39%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold730 SAMTools SNP 366409 366409 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.23%2C0.00089%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C189:28 scaffold730 SAMTools SNP 370315 370315 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C221:67 scaffold730 SAMTools SNP 370825 370825 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold730 SAMTools SNP 370865 370865 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold730 SAMTools SNP 370891 370891 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold730 SAMTools SNP 371687 371687 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold730 SAMTools SNP 375802 375802 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold730 SAMTools SNP 377630 377630 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.18%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C254:99 scaffold730 SAMTools SNP 377672 377672 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold730 SAMTools SNP 377685 377685 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.19%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold730 SAMTools SNP 383627 383627 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold730 SAMTools SNP 395840 395840 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 396532 396532 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 408955 408955 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C15%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 409166 409166 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D0.25%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold730 SAMTools SNP 410799 410799 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 411342 411342 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C31%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0016%2C5.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C117:51 scaffold730 SAMTools SNP 414942 414942 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.64%2C2.3e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold730 SAMTools SNP 415085 415085 34 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C13%3BMQ%3D50%3BFQ%3D18%3BPV4%3D1%2C1e-16%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C45:48 scaffold730 SAMTools SNP 416031 416031 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C24%2C107%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D7.8e-07%2C3.5e-175%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold730 SAMTools SNP 416259 416259 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.18%2C5.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold730 SAMTools SNP 416298 416298 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.17%2C6.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold730 SAMTools SNP 418188 418188 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.3e-09%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold730 SAMTools SNP 419412 419412 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C12%2C12%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.79%2C1.2e-38%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold730 SAMTools SNP 420858 420858 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C36%2C0:69 scaffold730 SAMTools SNP 421094 421094 6.98 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold730 SAMTools SNP 421594 421594 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.047%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold730 SAMTools SNP 422996 422996 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.61%2C1.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C241:73 scaffold730 SAMTools SNP 423029 423029 30 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C3e-08%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C127:63 scaffold730 SAMTools SNP 423225 423225 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold730 SAMTools SNP 423343 423343 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 424191 424191 107 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C254:99 scaffold730 SAMTools SNP 424233 424233 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold730 SAMTools SNP 424957 424957 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C47:50 scaffold730 SAMTools SNP 428336 428336 193 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold730 SAMTools SNP 428370 428370 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0058%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C2%2C3%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.032%2C0.074%2C1%2C1.1e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold730 SAMTools SNP 428881 428881 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C11%3BMQ%3D41%3BFQ%3D170%3BPV4%3D8.7e-05%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold730 SAMTools SNP 431743 431743 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold730 SAMTools SNP 431791 431791 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold730 SAMTools SNP 432545 432545 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C241:99 scaffold730 SAMTools SNP 432557 432557 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C232:99 scaffold730 SAMTools SNP 436381 436381 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C15%2C6%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.039%2C1e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold730 SAMTools SNP 436434 436434 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 436474 436474 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C28%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 437487 437487 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold730 SAMTools SNP 437543 437543 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C26%2C14%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 438235 438235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C2%2C60%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.15%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 438270 438270 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C33%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold730 SAMTools SNP 438351 438351 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D284%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C223%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 438380 438380 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C231%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold730 SAMTools SNP 440286 440286 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C7%2C101%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1e-133%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 443460 443460 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C4.5e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C195:99 scaffold730 SAMTools SNP 443529 443529 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold730 SAMTools SNP 443830 443830 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C235:99 scaffold730 SAMTools SNP 443866 443866 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold730 SAMTools SNP 444271 444271 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 444289 444289 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 445050 445050 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C69%2C0:99 scaffold730 SAMTools SNP 445898 445898 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 445914 445914 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 446393 446393 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C18%2C0:33 scaffold730 SAMTools SNP 446501 446501 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold730 SAMTools SNP 446503 446503 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold730 SAMTools SNP 447438 447438 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.47%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold730 SAMTools SNP 448300 448300 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold730 SAMTools SNP 448301 448301 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold730 SAMTools SNP 450081 450081 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D44%3BFQ%3D30%3BPV4%3D1%2C1.9e-09%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C95:60 scaffold730 SAMTools SNP 450807 450807 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold730 SAMTools SNP 451333 451333 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold730 SAMTools SNP 451423 451423 124 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C191:99 scaffold730 SAMTools SNP 452178 452178 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold730 SAMTools SNP 452626 452626 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0101%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold730 SAMTools SNP 453167 453167 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold730 SAMTools SNP 453177 453177 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.021%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold730 SAMTools SNP 453438 453438 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 453531 453531 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C8%3BMQ%3D48%3BFQ%3D-19%3BPV4%3D0.43%2C0.18%2C0.4%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold730 SAMTools SNP 454340 454340 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold730 SAMTools SNP 454408 454408 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold730 SAMTools SNP 462539 462539 33.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold730 SAMTools SNP 471109 471109 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold730 SAMTools SNP 510675 510675 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C2%2C3%3BMQ%3D49%3BFQ%3D101%3BPV4%3D0.63%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold730 SAMTools SNP 510732 510732 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C19%2C4%2C0%3BMQ%3D49%3BFQ%3D44%3BPV4%3D0.016%2C1%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold730 SAMTools SNP 510738 510738 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C1%2C7%3BMQ%3D49%3BFQ%3D150%3BPV4%3D0.02%2C0.12%2C0.13%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold730 SAMTools SNP 510768 510768 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold730 SAMTools SNP 511115 511115 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.53%2C2.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold730 SAMTools SNP 511136 511136 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.19%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold730 SAMTools SNP 513368 513368 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C44:43 scaffold730 SAMTools SNP 513416 513416 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold730 SAMTools SNP 513449 513449 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.25%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold730 SAMTools SNP 513626 513626 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold730 SAMTools SNP 514257 514257 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold730 SAMTools SNP 514443 514443 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 514457 514457 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 514668 514668 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold730 SAMTools SNP 514963 514963 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold730 SAMTools SNP 515014 515014 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold730 SAMTools SNP 515113 515113 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold730 SAMTools SNP 515505 515505 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 515559 515559 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 515881 515881 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold730 SAMTools SNP 515907 515907 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold730 SAMTools SNP 516366 516366 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold730 SAMTools SNP 516372 516372 65 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C39%2C0:75 scaffold730 SAMTools SNP 516442 516442 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold730 SAMTools SNP 516471 516471 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C11%2C0%3BMQ%3D49%3BFQ%3D138%3BPV4%3D0.02%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold730 SAMTools SNP 517212 517212 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C2.6e-07%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C182:99 scaffold730 SAMTools SNP 519130 519130 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 519156 519156 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C4%3BMQ%3D48%3BFQ%3D168%3BPV4%3D0.077%2C0.39%2C0.17%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C195:99 scaffold730 SAMTools SNP 521438 521438 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold730 SAMTools SNP 524317 524317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 524349 524349 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.58%2C3.2e-06%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold730 SAMTools SNP 525813 525813 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C5%2C31%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 526310 526310 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C21%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold730 SAMTools SNP 526361 526361 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C0%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C5.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold730 SAMTools SNP 526478 526478 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.18%2C0.0096%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C196:87 scaffold730 SAMTools SNP 527528 527528 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.63%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold730 SAMTools SNP 527531 527531 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C1%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.63%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold730 SAMTools SNP 528548 528548 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C14%2C1%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.041%2C1.5e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold730 SAMTools SNP 531300 531300 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 544790 544790 103 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C17%2C8%2C132%2C0%2C129:16 scaffold730 SAMTools SNP 545359 545359 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold730 SAMTools SNP 545417 545417 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold730 SAMTools SNP 545527 545527 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold730 SAMTools SNP 546120 546120 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C20%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00054%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold730 SAMTools SNP 546171 546171 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C1%2C16%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.021%2C5.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold730 SAMTools SNP 546177 546177 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold730 SAMTools SNP 546566 546566 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 546578 546578 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold730 SAMTools SNP 546702 546702 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold730 SAMTools SNP 546722 546722 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold730 SAMTools SNP 546966 546966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold730 SAMTools SNP 551799 551799 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C3%2C9%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.41%2C2.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold733 SAMTools SNP 1720 1720 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 2048 2048 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 3160 3160 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 3189 3189 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold733 SAMTools SNP 3200 3200 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold733 SAMTools SNP 3711 3711 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C10%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.38%2C1.3e-05%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C243:99 scaffold733 SAMTools SNP 4059 4059 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold733 SAMTools SNP 29285 29285 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C104:99 scaffold733 SAMTools SNP 31808 31808 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold733 SAMTools SNP 59074 59074 6.02 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold733 SAMTools SNP 70797 70797 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold733 SAMTools SNP 71116 71116 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold733 SAMTools SNP 73404 73404 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold733 SAMTools SNP 95170 95170 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 188803 188803 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 221094 221094 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C7%3BMQ%3D44%3BFQ%3D6.2%3BPV4%3D0.55%2C1.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C203:31 scaffold733 SAMTools SNP 228801 228801 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C61%2C4%2C12%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold733 SAMTools SNP 231213 231213 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C4%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 231769 231769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold733 SAMTools SNP 231790 231790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C18%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold733 SAMTools SNP 231832 231832 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold733 SAMTools SNP 231864 231864 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.014%2C1.2e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold733 SAMTools SNP 232733 232733 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C8%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 233299 233299 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D47%3BFQ%3D85%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C113:99 scaffold733 SAMTools SNP 235893 235893 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold733 SAMTools SNP 236066 236066 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C22%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold733 SAMTools SNP 236117 236117 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.25%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold733 SAMTools SNP 236453 236453 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold733 SAMTools SNP 236522 236522 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold733 SAMTools SNP 236828 236828 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C27%2C0:51 scaffold733 SAMTools SNP 237216 237216 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold733 SAMTools SNP 237523 237523 188 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C30%2C0:57 scaffold733 SAMTools SNP 240847 240847 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold733 SAMTools SNP 251550 251550 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold733 SAMTools SNP 254062 254062 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 254093 254093 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold733 SAMTools SNP 254321 254321 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 254342 254342 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold733 SAMTools SNP 254652 254652 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold733 SAMTools SNP 258248 258248 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold733 SAMTools SNP 258291 258291 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 258306 258306 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 261238 261238 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold733 SAMTools SNP 261372 261372 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 263073 263073 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 264463 264463 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C36%2C0:69 scaffold733 SAMTools SNP 265212 265212 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold733 SAMTools SNP 266509 266509 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold733 SAMTools SNP 266515 266515 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold733 SAMTools SNP 266524 266524 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 267237 267237 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 267314 267314 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold733 SAMTools SNP 270096 270096 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold733 SAMTools SNP 271678 271678 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold733 SAMTools SNP 275504 275504 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold733 SAMTools SNP 277422 277422 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold733 SAMTools SNP 277437 277437 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold733 SAMTools SNP 277467 277467 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold733 SAMTools SNP 297907 297907 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 302943 302943 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold733 SAMTools SNP 303001 303001 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C5%2C0:9 scaffold733 SAMTools SNP 303515 303515 16.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold733 SAMTools SNP 305581 305581 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold733 SAMTools SNP 306170 306170 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold733 SAMTools SNP 315133 315133 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C169:99 scaffold733 SAMTools SNP 318653 318653 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold733 SAMTools SNP 327530 327530 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold733 SAMTools SNP 331782 331782 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 332474 332474 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 362159 362159 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 373334 373334 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold733 SAMTools SNP 374873 374873 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold733 SAMTools SNP 376428 376428 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 424102 424102 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 424123 424123 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 424162 424162 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 431622 431622 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold733 SAMTools SNP 431984 431984 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold733 SAMTools SNP 432288 432288 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 441217 441217 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold733 SAMTools SNP 441238 441238 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 441622 441622 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 485999 485999 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C10%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.079%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold733 SAMTools SNP 492479 492479 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C50%2C0%2C15%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.033%2C4.1e-11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold733 SAMTools SNP 494187 494187 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.028%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold733 SAMTools SNP 498979 498979 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C18%2C3%2C3%3BMQ%3D49%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold733 SAMTools SNP 498987 498987 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C4%2C5%3BMQ%3D49%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold733 SAMTools SNP 499280 499280 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C9%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.18%2C0.4%2C0.14%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 500285 500285 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.43%2C0.49%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold733 SAMTools SNP 500832 500832 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold733 SAMTools SNP 534038 534038 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 541266 541266 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 547705 547705 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold733 SAMTools SNP 549317 549317 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold733 SAMTools SNP 553513 553513 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 553526 553526 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 553535 553535 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 580712 580712 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold733 SAMTools SNP 580842 580842 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold733 SAMTools SNP 591326 591326 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 623635 623635 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold733 SAMTools SNP 631134 631134 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold733 SAMTools SNP 631155 631155 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold733 SAMTools SNP 631173 631173 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 632355 632355 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold733 SAMTools SNP 633551 633551 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold733 SAMTools SNP 635497 635497 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C11%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C4.7e-16%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C199:62 scaffold733 SAMTools SNP 653020 653020 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold733 SAMTools SNP 677737 677737 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold733 SAMTools SNP 677920 677920 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold733 SAMTools SNP 690056 690056 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.00057%2C1%2C1%2C6.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold733 SAMTools SNP 690107 690107 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 692971 692971 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C155%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold733 SAMTools SNP 694804 694804 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C172%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold733 SAMTools SNP 694838 694838 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C3%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold733 SAMTools SNP 698356 698356 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C13%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold733 SAMTools SNP 698443 698443 223 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C1%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.63%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold733 SAMTools SNP 699531 699531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold733 SAMTools SNP 700338 700338 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C6%2C31%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.76%2C4e-50%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold733 SAMTools SNP 700350 700350 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C3%2C39%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.18%2C6.1e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold733 SAMTools SNP 701145 701145 69 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C36%2C26%2C15%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C8.6e-71%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold733 SAMTools SNP 702034 702034 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 703445 703445 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 703472 703472 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 704430 704430 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C28%2C0%2C17%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.022%2C1.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold733 SAMTools SNP 704506 704506 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C2%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.31%2C3.5e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold733 SAMTools SNP 704545 704545 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.52%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold733 SAMTools SNP 704766 704766 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold733 SAMTools SNP 704809 704809 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 705167 705167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.027%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 706278 706278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C12%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold733 SAMTools SNP 707166 707166 28.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold733 SAMTools SNP 722337 722337 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D54.5%3BPV4%3D1%2C0.12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C85:84 scaffold733 SAMTools SNP 722743 722743 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold733 SAMTools SNP 723169 723169 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0206%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.011%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold733 SAMTools SNP 723205 723205 83 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold733 SAMTools SNP 725781 725781 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C49:52 scaffold733 SAMTools SNP 725910 725910 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold733 SAMTools SNP 725925 725925 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold733 SAMTools SNP 726406 726406 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold733 SAMTools SNP 726446 726446 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold733 SAMTools SNP 726550 726550 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold733 SAMTools SNP 729905 729905 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold733 SAMTools SNP 730010 730010 11.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C15%2C0:22 scaffold733 SAMTools SNP 731299 731299 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 731323 731323 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C7%2C16%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold733 SAMTools SNP 731904 731904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C21%2C6%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.65%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold733 SAMTools SNP 737209 737209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C4%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold733 SAMTools SNP 737392 737392 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.1%2C6.8e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold733 SAMTools SNP 738789 738789 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold733 SAMTools SNP 738988 738988 51 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C57%2C0:99 scaffold733 SAMTools SNP 741312 741312 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 741318 741318 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 751214 751214 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold733 SAMTools SNP 751998 751998 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold733 SAMTools SNP 766228 766228 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold733 SAMTools SNP 766423 766423 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.2%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold733 SAMTools SNP 768660 768660 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold733 SAMTools SNP 768695 768695 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold733 SAMTools SNP 768954 768954 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.63%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold733 SAMTools SNP 769017 769017 188 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.07%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C186:99 scaffold733 SAMTools SNP 769320 769320 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold733 SAMTools SNP 769342 769342 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 769477 769477 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold733 SAMTools SNP 769532 769532 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold733 SAMTools SNP 769758 769758 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold733 SAMTools SNP 769782 769782 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold733 SAMTools SNP 771369 771369 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C26:29 scaffold733 SAMTools SNP 771801 771801 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold733 SAMTools SNP 771840 771840 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold733 SAMTools SNP 771860 771860 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold733 SAMTools SNP 771922 771922 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C15%2C3%3BMQ%3D50%3BFQ%3D89.5%3BPV4%3D0.21%2C4.5e-18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C120:99 scaffold733 SAMTools SNP 777720 777720 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C8.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold733 SAMTools SNP 778107 778107 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C6.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C131:55 scaffold733 SAMTools SNP 803846 803846 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold733 SAMTools SNP 803932 803932 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold733 SAMTools SNP 803960 803960 52.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold733 SAMTools SNP 804341 804341 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold733 SAMTools SNP 804389 804389 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 806460 806460 144 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold733 SAMTools SNP 806483 806483 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold733 SAMTools SNP 806576 806576 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 807478 807478 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold733 SAMTools SNP 807511 807511 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold733 SAMTools SNP 807536 807536 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 807750 807750 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 810379 810379 110 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C66%2C0%2C118%2C17%2C112:99 scaffold733 SAMTools SNP 810515 810515 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold733 SAMTools SNP 811445 811445 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold733 SAMTools SNP 812248 812248 206 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold733 SAMTools SNP 812791 812791 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C18:21 scaffold733 SAMTools SNP 813044 813044 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C14%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.69%2C6.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold733 SAMTools SNP 813672 813672 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C33%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 815354 815354 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold733 SAMTools SNP 815843 815843 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C30%2C0:57 scaffold733 SAMTools SNP 818901 818901 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1.9e-13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold733 SAMTools SNP 819245 819245 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 819468 819468 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C11%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold733 SAMTools SNP 819671 819671 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.00061%2C1.5e-12%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold733 SAMTools SNP 823041 823041 62 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold733 SAMTools SNP 824125 824125 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold733 SAMTools SNP 826196 826196 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C24%2C0:45 scaffold733 SAMTools SNP 861176 861176 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 861383 861383 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 861407 861407 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 865364 865364 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.38%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C17:20 scaffold733 SAMTools SNP 884547 884547 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00024%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C32:35 scaffold733 SAMTools SNP 894089 894089 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold733 SAMTools SNP 898235 898235 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold733 SAMTools SNP 902596 902596 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.044%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold733 SAMTools SNP 905045 905045 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold733 SAMTools SNP 906343 906343 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold733 SAMTools SNP 906400 906400 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.067%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold733 SAMTools SNP 906986 906986 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C151:99 scaffold733 SAMTools SNP 912410 912410 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold733 SAMTools SNP 941664 941664 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 955301 955301 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C26:29 scaffold733 SAMTools SNP 955312 955312 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold733 SAMTools SNP 955342 955342 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C7.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C219:51 scaffold733 SAMTools SNP 971337 971337 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold733 SAMTools SNP 971384 971384 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold733 SAMTools SNP 972611 972611 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 973184 973184 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold733 SAMTools SNP 976081 976081 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold733 SAMTools SNP 977029 977029 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold733 SAMTools SNP 978447 978447 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 978478 978478 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 978691 978691 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 978760 978760 54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C0.0011%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C156:87 scaffold733 SAMTools SNP 979527 979527 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold733 SAMTools SNP 979911 979911 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold733 SAMTools SNP 979923 979923 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold733 SAMTools SNP 980549 980549 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold733 SAMTools SNP 980664 980664 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C4.8e-05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold733 SAMTools SNP 980980 980980 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 981076 981076 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 981106 981106 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold733 SAMTools SNP 981638 981638 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 981680 981680 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 981815 981815 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold733 SAMTools SNP 982244 982244 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C48%2C0:93 scaffold733 SAMTools SNP 982621 982621 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C42%2C0:79 scaffold733 SAMTools SNP 982747 982747 80 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C224:99 scaffold733 SAMTools SNP 982750 982750 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C119:99 scaffold733 SAMTools SNP 982762 982762 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold733 SAMTools SNP 983150 983150 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold733 SAMTools SNP 983419 983419 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 983573 983573 32.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold733 SAMTools SNP 983770 983770 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold733 SAMTools SNP 983882 983882 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.4%2C0.0031%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C110:44 scaffold733 SAMTools SNP 983908 983908 164 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:197%2C15%2C0:27 scaffold733 SAMTools SNP 983915 983915 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold733 SAMTools SNP 984990 984990 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.66%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold733 SAMTools SNP 985113 985113 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold733 SAMTools SNP 985143 985143 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold733 SAMTools SNP 985591 985591 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold733 SAMTools SNP 985911 985911 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold733 SAMTools SNP 985980 985980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold733 SAMTools SNP 986214 986214 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.56%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold733 SAMTools SNP 986312 986312 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 986349 986349 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold733 SAMTools SNP 986652 986652 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold733 SAMTools SNP 986748 986748 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C245:60 scaffold733 SAMTools SNP 987539 987539 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 988320 988320 131 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C25:28 scaffold733 SAMTools SNP 988344 988344 160 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0034%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold733 SAMTools SNP 988371 988371 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold733 SAMTools SNP 988401 988401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.0039%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold733 SAMTools SNP 988914 988914 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold733 SAMTools SNP 989389 989389 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold733 SAMTools SNP 989407 989407 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold733 SAMTools SNP 989460 989460 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold733 SAMTools SNP 989476 989476 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 989493 989493 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.3%2C0.41%2C1%2C8.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold733 SAMTools SNP 990331 990331 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C30%2C0:57 scaffold733 SAMTools SNP 990337 990337 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold733 SAMTools SNP 990485 990485 155 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold733 SAMTools SNP 990916 990916 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.18%2C4.5e-13%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C152:60 scaffold733 SAMTools SNP 991150 991150 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C0.18%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold733 SAMTools SNP 991329 991329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold733 SAMTools SNP 992338 992338 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold733 SAMTools SNP 992934 992934 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.18%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold733 SAMTools SNP 995006 995006 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold733 SAMTools SNP 995502 995502 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold733 SAMTools SNP 995595 995595 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold733 SAMTools SNP 995656 995656 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 1000410 1000410 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C227:99 scaffold733 SAMTools SNP 1000541 1000541 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold733 SAMTools SNP 1000829 1000829 18 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold733 SAMTools SNP 1002931 1002931 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C57%2C48%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C4.8e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 1003422 1003422 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C238%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold733 SAMTools SNP 1003935 1003935 68 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D507%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C48%2C235%2C125%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.59%2C5e-309%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold733 SAMTools SNP 1004058 1004058 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C235%2C26%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-10%2C2.8e-203%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 1018548 1018548 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold733 SAMTools SNP 1041057 1041057 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 1041085 1041085 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold733 SAMTools SNP 1074198 1074198 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold733 SAMTools SNP 1074199 1074199 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold733 SAMTools SNP 1074225 1074225 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C10%2C0%3BMQ%3D49%3BFQ%3D162%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C243:99 scaffold733 SAMTools SNP 1074831 1074831 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C23%2C0%3BMQ%3D48%3BFQ%3D160%3BPV4%3D1%2C1%2C0.18%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C187:99 scaffold733 SAMTools SNP 1096348 1096348 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold733 SAMTools SNP 1096412 1096412 52.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold733 SAMTools SNP 1096993 1096993 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold733 SAMTools SNP 1097020 1097020 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.074%2C1%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C228:99 scaffold733 SAMTools SNP 1097727 1097727 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D48%3BFQ%3D25%3BPV4%3D1%2C1%2C0.016%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold733 SAMTools SNP 1097774 1097774 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D45%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold733 SAMTools SNP 1099891 1099891 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D32%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold733 SAMTools SNP 1107761 1107761 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C6%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold733 SAMTools SNP 1109991 1109991 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1.1e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold733 SAMTools SNP 1110057 1110057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C29%2C10%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold734 SAMTools SNP 12602 12602 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold734 SAMTools SNP 12773 12773 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold734 SAMTools SNP 28065 28065 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C1%2C115%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1.1e-179%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold734 SAMTools SNP 32517 32517 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold734 SAMTools SNP 67560 67560 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold734 SAMTools SNP 69257 69257 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold734 SAMTools SNP 70354 70354 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold735 SAMTools SNP 68 68 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.17%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C220:99 scaffold735 SAMTools SNP 921 921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C10%2C44%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold735 SAMTools SNP 964 964 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C77%2C29%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold735 SAMTools SNP 997 997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C45%2C39%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold735 SAMTools SNP 1183 1183 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold735 SAMTools SNP 1186 1186 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C132:99 scaffold735 SAMTools SNP 1201 1201 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.3%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold735 SAMTools SNP 1595 1595 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C69%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold735 SAMTools SNP 6762 6762 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C1%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.18%2C0.28%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C17:20 scaffold735 SAMTools SNP 6803 6803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C1%2C299%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.088%2C0.5%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold735 SAMTools SNP 7134 7134 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C317%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold735 SAMTools SNP 7143 7143 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D495%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C435%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold735 SAMTools SNP 7224 7224 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C62:65 scaffold735 SAMTools SNP 7225 7225 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold735 SAMTools SNP 7805 7805 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D505%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C12%2C186%2C52%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1.8e-06%2C1%2C0.4%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold735 SAMTools SNP 7826 7826 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D500%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C15%2C2%2C482%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C3.9e-06%2C0.43%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold735 SAMTools SNP 8027 8027 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold735 SAMTools SNP 21056 21056 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold735 SAMTools SNP 21284 21284 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold735 SAMTools SNP 21332 21332 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.24%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C134:33 scaffold735 SAMTools SNP 21749 21749 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold735 SAMTools SNP 21770 21770 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold735 SAMTools SNP 84966 84966 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold735 SAMTools SNP 85432 85432 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold736 SAMTools SNP 5382 5382 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold736 SAMTools SNP 5383 5383 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold736 SAMTools SNP 7606 7606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold736 SAMTools SNP 7615 7615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold736 SAMTools SNP 7672 7672 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold736 SAMTools SNP 7681 7681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C35%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold736 SAMTools SNP 8300 8300 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.02%2C1%2C1%2C3.9e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold736 SAMTools SNP 8303 8303 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C9%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.0017%2C0.46%2C1%2C2.2e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold736 SAMTools SNP 8866 8866 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C2%2C66%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.014%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold736 SAMTools SNP 57230 57230 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold736 SAMTools SNP 62917 62917 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold736 SAMTools SNP 63884 63884 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold736 SAMTools SNP 64324 64324 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold736 SAMTools SNP 66698 66698 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold736 SAMTools SNP 72533 72533 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold736 SAMTools SNP 72998 72998 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold736 SAMTools SNP 73010 73010 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold736 SAMTools SNP 73169 73169 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold736 SAMTools SNP 73777 73777 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.43%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold736 SAMTools SNP 73810 73810 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold736 SAMTools SNP 73837 73837 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C4.5e-15%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C145:99 scaffold736 SAMTools SNP 76448 76448 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C5.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C241:66 scaffold736 SAMTools SNP 77838 77838 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold736 SAMTools SNP 81552 81552 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C7%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold736 SAMTools SNP 81594 81594 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold736 SAMTools SNP 82330 82330 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold736 SAMTools SNP 82429 82429 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C36%2C0:69 scaffold736 SAMTools SNP 82432 82432 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.26%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C55:58 scaffold736 SAMTools SNP 82719 82719 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold736 SAMTools SNP 82889 82889 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C4%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0023%2C2.7e-15%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C242:99 scaffold736 SAMTools SNP 83238 83238 70.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C21%2C0:39 scaffold736 SAMTools SNP 83262 83262 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold736 SAMTools SNP 83541 83541 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold736 SAMTools SNP 83954 83954 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.58%2C0.21%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold736 SAMTools SNP 83969 83969 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold737 SAMTools SNP 16357 16357 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold737 SAMTools SNP 18851 18851 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold737 SAMTools SNP 19055 19055 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold737 SAMTools SNP 22662 22662 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.028%2C3.5e-09%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C150:99 scaffold737 SAMTools SNP 22696 22696 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold737 SAMTools SNP 23438 23438 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold737 SAMTools SNP 25147 25147 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold737 SAMTools SNP 26537 26537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold737 SAMTools SNP 30399 30399 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C218:99 scaffold737 SAMTools SNP 30474 30474 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.0092;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold737 SAMTools SNP 34531 34531 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C217:99 scaffold737 SAMTools SNP 35195 35195 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold737 SAMTools SNP 35198 35198 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold737 SAMTools SNP 35223 35223 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold737 SAMTools SNP 38120 38120 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold737 SAMTools SNP 38287 38287 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C255%2C0:99 scaffold737 SAMTools SNP 38510 38510 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C26%2C1%2C5%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.39%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold737 SAMTools SNP 38570 38570 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C38%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 39778 39778 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C10%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.34%2C0.00053%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C254:99 scaffold737 SAMTools SNP 39832 39832 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C51%2C0:99 scaffold737 SAMTools SNP 40996 40996 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold737 SAMTools SNP 47029 47029 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold737 SAMTools SNP 47056 47056 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold737 SAMTools SNP 48369 48369 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 49759 49759 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.018%2C2.1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold737 SAMTools SNP 51844 51844 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold737 SAMTools SNP 51903 51903 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold737 SAMTools SNP 52432 52432 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold737 SAMTools SNP 52460 52460 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C15%2C0%3BMQ%3D50%3BFQ%3D99.5%3BPV4%3D0.035%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C129:99 scaffold737 SAMTools SNP 52507 52507 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold737 SAMTools SNP 54399 54399 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold737 SAMTools SNP 60725 60725 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.37%2C0.15%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C158:99 scaffold737 SAMTools SNP 61623 61623 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold737 SAMTools SNP 61662 61662 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold737 SAMTools SNP 96611 96611 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 97577 97577 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold737 SAMTools SNP 97626 97626 125 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C104:99 scaffold737 SAMTools SNP 98419 98419 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C36%2C2%2C6%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold737 SAMTools SNP 98571 98571 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0261%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D30%2C12%2C3%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.15%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold737 SAMTools SNP 98734 98734 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C13%2C15%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.61%2C4.3e-76%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold737 SAMTools SNP 98934 98934 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C90%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold737 SAMTools SNP 98979 98979 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C34%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold737 SAMTools SNP 99252 99252 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C45%2C0:87 scaffold737 SAMTools SNP 100487 100487 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold737 SAMTools SNP 107801 107801 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 107862 107862 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 109140 109140 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold737 SAMTools SNP 113762 113762 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C193:99 scaffold737 SAMTools SNP 115359 115359 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C4.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C110:78 scaffold737 SAMTools SNP 117175 117175 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C4.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C221:80 scaffold737 SAMTools SNP 117382 117382 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C28%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C68:71 scaffold737 SAMTools SNP 119582 119582 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold737 SAMTools SNP 119597 119597 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C39%2C0:75 scaffold737 SAMTools SNP 119753 119753 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold737 SAMTools SNP 119939 119939 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold737 SAMTools SNP 121209 121209 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 121210 121210 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C42:42 scaffold737 SAMTools SNP 121643 121643 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.32%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C85:88 scaffold737 SAMTools SNP 121667 121667 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold737 SAMTools SNP 128282 128282 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold737 SAMTools SNP 133255 133255 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.22%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C234:99 scaffold737 SAMTools SNP 134397 134397 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold737 SAMTools SNP 134485 134485 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold737 SAMTools SNP 134486 134486 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.022%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold737 SAMTools SNP 134904 134904 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 135811 135811 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 139743 139743 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 141343 141343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold737 SAMTools SNP 141413 141413 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.19%2C1.1e-11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C212:66 scaffold737 SAMTools SNP 147219 147219 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold737 SAMTools SNP 147253 147253 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C0.18%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C173:99 scaffold737 SAMTools SNP 147494 147494 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold737 SAMTools SNP 147515 147515 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold737 SAMTools SNP 151274 151274 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.012%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold737 SAMTools SNP 151319 151319 65.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C15%2C0:27 scaffold737 SAMTools SNP 160724 160724 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold737 SAMTools SNP 161603 161603 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C74:77 scaffold737 SAMTools SNP 165250 165250 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold737 SAMTools SNP 168814 168814 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold737 SAMTools SNP 168863 168863 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold737 SAMTools SNP 171910 171910 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 171942 171942 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C0%2C24%3BMQ%3D50%3BFQ%3D216%3BPV4%3D6.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold737 SAMTools SNP 172242 172242 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.029%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C136:99 scaffold737 SAMTools SNP 173553 173553 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold737 SAMTools SNP 173589 173589 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold737 SAMTools SNP 173610 173610 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold737 SAMTools SNP 177013 177013 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 177548 177548 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 177573 177573 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 177893 177893 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C200:99 scaffold737 SAMTools SNP 178546 178546 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold737 SAMTools SNP 178570 178570 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold737 SAMTools SNP 178690 178690 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold737 SAMTools SNP 179467 179467 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.3%2C0.41%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold737 SAMTools SNP 179517 179517 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold737 SAMTools SNP 179521 179521 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C151:99 scaffold737 SAMTools SNP 179933 179933 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold737 SAMTools SNP 180034 180034 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C22%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.4%2C4.9e-53%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold737 SAMTools SNP 180156 180156 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C4%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 180364 180364 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 180570 180570 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold737 SAMTools SNP 181593 181593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C19%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold737 SAMTools SNP 182300 182300 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold737 SAMTools SNP 182519 182519 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C4%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.67%2C0.0013%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold737 SAMTools SNP 182947 182947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C72%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold737 SAMTools SNP 182975 182975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold737 SAMTools SNP 183387 183387 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 183722 183722 50.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold737 SAMTools SNP 183827 183827 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 183977 183977 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold737 SAMTools SNP 184563 184563 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C5%3BMQ%3D48%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold737 SAMTools SNP 184566 184566 38 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C4%3BMQ%3D48%3BFQ%3D41%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold737 SAMTools SNP 184736 184736 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.47%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold737 SAMTools SNP 185235 185235 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.39%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold737 SAMTools SNP 185608 185608 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C146:39 scaffold737 SAMTools SNP 185763 185763 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold737 SAMTools SNP 185991 185991 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold737 SAMTools SNP 186238 186238 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold737 SAMTools SNP 186393 186393 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold737 SAMTools SNP 187940 187940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold737 SAMTools SNP 187972 187972 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold737 SAMTools SNP 189100 189100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold737 SAMTools SNP 189112 189112 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold737 SAMTools SNP 190004 190004 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 190006 190006 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 190619 190619 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C16%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 191053 191053 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C4%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.43%2C0.0075%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold737 SAMTools SNP 191101 191101 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C7%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 191595 191595 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C26%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold737 SAMTools SNP 191814 191814 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 192082 192082 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C8%2C9%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C1.4e-21%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C219:81 scaffold737 SAMTools SNP 192299 192299 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.0022%2C0.0013%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C157:55 scaffold737 SAMTools SNP 192348 192348 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C4%2C3%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.032%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold737 SAMTools SNP 192384 192384 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold737 SAMTools SNP 192399 192399 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold737 SAMTools SNP 192810 192810 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold737 SAMTools SNP 193134 193134 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold737 SAMTools SNP 193221 193221 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C4%2C3%3BMQ%3D34%3BFQ%3D-34%3BPV4%3D0.24%2C0.11%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C7%2C0:12 scaffold737 SAMTools SNP 207683 207683 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold737 SAMTools SNP 207705 207705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold737 SAMTools SNP 208166 208166 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold737 SAMTools SNP 208241 208241 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C12%2C0:21 scaffold737 SAMTools SNP 208244 208244 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C15%2C0:27 scaffold737 SAMTools SNP 208614 208614 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.43%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold737 SAMTools SNP 209132 209132 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold737 SAMTools SNP 209135 209135 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold737 SAMTools SNP 209165 209165 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold737 SAMTools SNP 209210 209210 222 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0%2C248%2C34%2C245:99 scaffold737 SAMTools SNP 209249 209249 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C16%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 209268 209268 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C42%2C18%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 209703 209703 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C70%2C3%2C22%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold737 SAMTools SNP 212182 212182 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C11%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.29%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold737 SAMTools SNP 212248 212248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold737 SAMTools SNP 212564 212564 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.021%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold737 SAMTools SNP 213371 213371 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold737 SAMTools SNP 213401 213401 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold737 SAMTools SNP 214172 214172 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 214205 214205 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 214259 214259 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold737 SAMTools SNP 214499 214499 212 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1.2e-07%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C200:99 scaffold737 SAMTools SNP 214552 214552 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C0%2C18%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1.1e-14%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold737 SAMTools SNP 215309 215309 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold737 SAMTools SNP 215575 215575 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D96%3BPV4%3D5.5e-06%2C0.078%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold737 SAMTools SNP 215593 215593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D61%3BPV4%3D6.5e-05%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold737 SAMTools SNP 215683 215683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 215687 215687 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C21%2C1%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.0032%2C1%2C1%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold737 SAMTools SNP 215695 215695 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C9%2C9%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.00012%2C7.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold737 SAMTools SNP 215952 215952 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 215981 215981 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C9%2C10%2C13%3BMQ%3D50%3BFQ%3D203%3BPV4%3D2.5e-07%2C1%2C1%2C2.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold737 SAMTools SNP 216529 216529 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C39%2C98%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.0014%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold737 SAMTools SNP 216598 216598 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C49%2C28%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C1.7e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 216604 216604 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C35%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold737 SAMTools SNP 217442 217442 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C46%2C43%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 217928 217928 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C56%2C26%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 218184 218184 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C40%2C0%2C38%3BMQ%3D50%3BFQ%3D205%3BPV4%3D7.4e-06%2C0.31%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold737 SAMTools SNP 219199 219199 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C21%2C0:39 scaffold737 SAMTools SNP 219343 219343 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C29%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.024%2C2.8e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C67:70 scaffold737 SAMTools SNP 227540 227540 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 227572 227572 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold737 SAMTools SNP 227595 227595 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C195:99 scaffold737 SAMTools SNP 232866 232866 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.69%2C0.0019%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold737 SAMTools SNP 233064 233064 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold737 SAMTools SNP 236910 236910 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold737 SAMTools SNP 239792 239792 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold737 SAMTools SNP 259417 259417 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold737 SAMTools SNP 268754 268754 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold737 SAMTools SNP 269228 269228 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C1%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C105%2C0:99 scaffold737 SAMTools SNP 277392 277392 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C132:99 scaffold737 SAMTools SNP 285688 285688 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 285769 285769 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 286107 286107 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 286146 286146 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 287200 287200 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold737 SAMTools SNP 287280 287280 87 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold737 SAMTools SNP 288373 288373 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 289027 289027 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 300997 300997 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold737 SAMTools SNP 343242 343242 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C27%2C0:51 scaffold737 SAMTools SNP 343294 343294 111 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C54%2C0:99 scaffold737 SAMTools SNP 343440 343440 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold737 SAMTools SNP 343605 343605 30.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold737 SAMTools SNP 343656 343656 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold737 SAMTools SNP 347370 347370 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.21%2C5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold737 SAMTools SNP 347511 347511 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C32%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C3.2e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 347532 347532 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C17%2C18%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 349056 349056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C44%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 349098 349098 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C43%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold737 SAMTools SNP 349113 349113 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C44%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold737 SAMTools SNP 353194 353194 227 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold737 SAMTools SNP 353473 353473 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold737 SAMTools SNP 353486 353486 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold737 SAMTools SNP 353557 353557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold737 SAMTools SNP 353608 353608 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C182:99 scaffold737 SAMTools SNP 356147 356147 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C207:60 scaffold737 SAMTools SNP 357382 357382 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C1%2C4%3BMQ%3D46%3BFQ%3D32%3BPV4%3D0.62%2C1%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold737 SAMTools SNP 364664 364664 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C63%2C0:99 scaffold737 SAMTools SNP 365510 365510 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 365542 365542 103 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1e-23%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C195:99 scaffold737 SAMTools SNP 365632 365632 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold737 SAMTools SNP 365635 365635 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.0041%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C204:99 scaffold737 SAMTools SNP 365642 365642 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold737 SAMTools SNP 365947 365947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold737 SAMTools SNP 365965 365965 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C24%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C252:99 scaffold737 SAMTools SNP 366223 366223 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0038%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.19%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold737 SAMTools SNP 366265 366265 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold737 SAMTools SNP 366274 366274 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.044%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold737 SAMTools SNP 366524 366524 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold737 SAMTools SNP 366536 366536 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold737 SAMTools SNP 366563 366563 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.26%2C5.7e-05%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold737 SAMTools SNP 367299 367299 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold737 SAMTools SNP 367367 367367 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold737 SAMTools SNP 368718 368718 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 368742 368742 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 368745 368745 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 382921 382921 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 382934 382934 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold737 SAMTools SNP 382989 382989 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold737 SAMTools SNP 388726 388726 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold737 SAMTools SNP 389199 389199 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold739 SAMTools SNP 20112 20112 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 1188 1188 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C18%2C2%2C0%3BMQ%3D13%3BFQ%3D-57%3BPV4%3D0.15%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C30%2C0:27 scaffold743 SAMTools SNP 2124 2124 4.85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C1%2C2%3BMQ%3D15%3BFQ%3D-32%3BPV4%3D0.27%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C5%2C0:5 scaffold743 SAMTools SNP 2573 2573 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C6.4e-11%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C147:50 scaffold743 SAMTools SNP 3981 3981 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold743 SAMTools SNP 4098 4098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold743 SAMTools SNP 5232 5232 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold743 SAMTools SNP 7568 7568 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold743 SAMTools SNP 9889 9889 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 9896 9896 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.35%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold743 SAMTools SNP 10649 10649 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold743 SAMTools SNP 10666 10666 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold743 SAMTools SNP 13430 13430 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold743 SAMTools SNP 13436 13436 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold743 SAMTools SNP 13443 13443 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold743 SAMTools SNP 15936 15936 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 15959 15959 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold743 SAMTools SNP 16699 16699 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 16749 16749 137 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C71:74 scaffold743 SAMTools SNP 19437 19437 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold743 SAMTools SNP 26576 26576 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.55%2C0.33%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C183:99 scaffold743 SAMTools SNP 26672 26672 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.28%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold743 SAMTools SNP 27144 27144 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold743 SAMTools SNP 28432 28432 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold743 SAMTools SNP 28465 28465 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 28573 28573 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold743 SAMTools SNP 28606 28606 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C17%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold743 SAMTools SNP 28979 28979 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold743 SAMTools SNP 29003 29003 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold743 SAMTools SNP 29127 29127 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.27%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold743 SAMTools SNP 29612 29612 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold743 SAMTools SNP 29829 29829 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C0%2C59%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.017%2C1.6e-64%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold743 SAMTools SNP 54030 54030 18.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold743 SAMTools SNP 78347 78347 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold743 SAMTools SNP 78373 78373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C32%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.023%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold743 SAMTools SNP 79116 79116 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold743 SAMTools SNP 79119 79119 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.49%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold743 SAMTools SNP 79134 79134 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold743 SAMTools SNP 81419 81419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold743 SAMTools SNP 81452 81452 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C13%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0023%2C0.42%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold743 SAMTools SNP 81984 81984 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold743 SAMTools SNP 82019 82019 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold743 SAMTools SNP 82023 82023 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold743 SAMTools SNP 83298 83298 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold743 SAMTools SNP 83331 83331 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold743 SAMTools SNP 83355 83355 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold743 SAMTools SNP 86671 86671 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold743 SAMTools SNP 86682 86682 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold743 SAMTools SNP 86703 86703 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C253:99 scaffold743 SAMTools SNP 87927 87927 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C2%2C18%2C4%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.054%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold743 SAMTools SNP 87972 87972 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold743 SAMTools SNP 89265 89265 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold743 SAMTools SNP 89449 89449 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold743 SAMTools SNP 89464 89464 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold743 SAMTools SNP 90108 90108 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D25.6%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C63:56 scaffold743 SAMTools SNP 90118 90118 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0075%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C138:47 scaffold743 SAMTools SNP 91218 91218 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold743 SAMTools SNP 92324 92324 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold743 SAMTools SNP 204271 204271 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold743 SAMTools SNP 204354 204354 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold743 SAMTools SNP 206337 206337 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 8709 8709 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold747 SAMTools SNP 10665 10665 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold747 SAMTools SNP 10698 10698 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C68:71 scaffold747 SAMTools SNP 10935 10935 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 10941 10941 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 28692 28692 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold747 SAMTools SNP 40650 40650 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold747 SAMTools SNP 40681 40681 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold747 SAMTools SNP 40876 40876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold747 SAMTools SNP 41446 41446 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 42726 42726 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D30%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C90%2C0:99 scaffold747 SAMTools SNP 42989 42989 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold747 SAMTools SNP 44279 44279 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 44601 44601 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 45282 45282 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D0.065%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold747 SAMTools SNP 45307 45307 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D49%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold747 SAMTools SNP 46967 46967 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold747 SAMTools SNP 46973 46973 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold747 SAMTools SNP 48530 48530 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold747 SAMTools SNP 48536 48536 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold747 SAMTools SNP 48562 48562 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C115:36 scaffold747 SAMTools SNP 91366 91366 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 95231 95231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold747 SAMTools SNP 97768 97768 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C57%2C0:82 scaffold747 SAMTools SNP 130183 130183 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold747 SAMTools SNP 130195 130195 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold747 SAMTools SNP 130673 130673 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold747 SAMTools SNP 131159 131159 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold747 SAMTools SNP 131237 131237 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C24%2C0:45 scaffold747 SAMTools SNP 131809 131809 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.036%2C2.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C69:44 scaffold747 SAMTools SNP 131812 131812 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C142:72 scaffold747 SAMTools SNP 131833 131833 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 132402 132402 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C36%2C0:69 scaffold747 SAMTools SNP 132784 132784 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold747 SAMTools SNP 132799 132799 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold747 SAMTools SNP 133266 133266 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold747 SAMTools SNP 133357 133357 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.00045%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C13%2C0:23 scaffold747 SAMTools SNP 133384 133384 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold747 SAMTools SNP 135272 135272 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C19%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold747 SAMTools SNP 135359 135359 32.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C10%3BMQ%3D39%3BFQ%3D-31%3BPV4%3D1%2C5.6e-11%2C0.22%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C4%2C0:7 scaffold747 SAMTools SNP 142630 142630 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold747 SAMTools SNP 142691 142691 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold747 SAMTools SNP 142703 142703 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold747 SAMTools SNP 143260 143260 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D35.5%3BPV4%3D1%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C65:65 scaffold747 SAMTools SNP 143269 143269 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold747 SAMTools SNP 143681 143681 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 143754 143754 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold747 SAMTools SNP 143802 143802 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold747 SAMTools SNP 144185 144185 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold747 SAMTools SNP 144204 144204 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold747 SAMTools SNP 144470 144470 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold747 SAMTools SNP 144531 144531 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold747 SAMTools SNP 145176 145176 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold747 SAMTools SNP 145302 145302 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold747 SAMTools SNP 145317 145317 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold747 SAMTools SNP 146134 146134 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C27%2C0:51 scaffold747 SAMTools SNP 146187 146187 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold747 SAMTools SNP 146522 146522 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold747 SAMTools SNP 148491 148491 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 148512 148512 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 149018 149018 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 149057 149057 172 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold747 SAMTools SNP 149500 149500 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C0.077%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C171:99 scaffold747 SAMTools SNP 149984 149984 111 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold747 SAMTools SNP 150008 150008 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C100:99 scaffold747 SAMTools SNP 150056 150056 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold747 SAMTools SNP 152427 152427 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold747 SAMTools SNP 152478 152478 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold747 SAMTools SNP 153236 153236 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C154:99 scaffold747 SAMTools SNP 153354 153354 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold747 SAMTools SNP 153695 153695 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold747 SAMTools SNP 153770 153770 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold747 SAMTools SNP 153776 153776 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold747 SAMTools SNP 154029 154029 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold747 SAMTools SNP 154047 154047 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold747 SAMTools SNP 154457 154457 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold747 SAMTools SNP 158658 158658 68.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C15%2C0:27 scaffold747 SAMTools SNP 160545 160545 6.79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold747 SAMTools SNP 161742 161742 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold747 SAMTools SNP 165062 165062 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 169661 169661 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold747 SAMTools SNP 221703 221703 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold747 SAMTools SNP 228423 228423 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.7%2C0.089%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold747 SAMTools SNP 228424 228424 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0016%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold747 SAMTools SNP 231460 231460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C213%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold747 SAMTools SNP 233048 233048 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C45%2C16%2C161%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.59%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold747 SAMTools SNP 237587 237587 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 238105 238105 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold747 SAMTools SNP 238502 238502 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 241453 241453 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold747 SAMTools SNP 242428 242428 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold747 SAMTools SNP 242480 242480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C17%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold747 SAMTools SNP 244133 244133 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.34%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold747 SAMTools SNP 250634 250634 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C21%2C26%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0048%2C1%2C1%2C1.3e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 250654 250654 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C21%2C39%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 251331 251331 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0045%2C3e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C209:48 scaffold747 SAMTools SNP 251846 251846 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C0%2C15%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold747 SAMTools SNP 251875 251875 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C9%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C216:99 scaffold747 SAMTools SNP 256344 256344 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 256371 256371 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 257411 257411 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D546%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C242%2C2%2C224%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.2e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 257472 257472 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C53:40 scaffold747 SAMTools SNP 257530 257530 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold747 SAMTools SNP 257793 257793 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold747 SAMTools SNP 257834 257834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold747 SAMTools SNP 259840 259840 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 259861 259861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 260242 260242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold747 SAMTools SNP 265173 265173 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 265213 265213 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold747 SAMTools SNP 265270 265270 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold747 SAMTools SNP 265626 265626 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold747 SAMTools SNP 265938 265938 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold747 SAMTools SNP 266318 266318 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold747 SAMTools SNP 266390 266390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.25%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold747 SAMTools SNP 267851 267851 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold747 SAMTools SNP 267890 267890 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 270979 270979 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.38%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C226:99 scaffold747 SAMTools SNP 271028 271028 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.12%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold747 SAMTools SNP 271275 271275 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C87%2C0:99 scaffold747 SAMTools SNP 271294 271294 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold747 SAMTools SNP 271855 271855 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C48%2C0:70 scaffold747 SAMTools SNP 271939 271939 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.15%2C6e-05%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold747 SAMTools SNP 272136 272136 54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C47%2C0%3BMQ%3D50%3BFQ%3D-121%3BPV4%3D0.021%2C4.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C94%2C0:99 scaffold747 SAMTools SNP 272482 272482 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.044%2C9.8e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold747 SAMTools SNP 273038 273038 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D3e-05%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold747 SAMTools SNP 273042 273042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold747 SAMTools SNP 274301 274301 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C2%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C126%2C0:99 scaffold747 SAMTools SNP 276595 276595 62.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.062%2C0.0036%2C1%2C7.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C2:5 scaffold747 SAMTools SNP 276727 276727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C19%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold747 SAMTools SNP 276906 276906 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold747 SAMTools SNP 276913 276913 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold747 SAMTools SNP 276919 276919 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold747 SAMTools SNP 279585 279585 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 280010 280010 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C22%2C11%2C2%3BMQ%3D49%3BFQ%3D161%3BPV4%3D0.2%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold747 SAMTools SNP 280011 280011 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C22%2C11%2C2%3BMQ%3D49%3BFQ%3D161%3BPV4%3D0.2%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold747 SAMTools SNP 280061 280061 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C1%2C16%3BMQ%3D48%3BFQ%3D206%3BPV4%3D0.34%2C0.39%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold747 SAMTools SNP 283067 283067 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.008%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C129:39 scaffold747 SAMTools SNP 283694 283694 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C11%2C17%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.12%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 288141 288141 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C17%2C19%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-10%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 288159 288159 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C22%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold747 SAMTools SNP 288165 288165 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C15%2C46%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 288180 288180 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C40%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C2.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 288989 288989 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C32%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold747 SAMTools SNP 289758 289758 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C33%2C0:63 scaffold747 SAMTools SNP 290231 290231 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C24%2C0:45 scaffold747 SAMTools SNP 290951 290951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C83%2C90%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.25%2C0.45%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold747 SAMTools SNP 292696 292696 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C1%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold747 SAMTools SNP 292700 292700 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C0%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold747 SAMTools SNP 295799 295799 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C7.9e-17%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C223:40 scaffold747 SAMTools SNP 295874 295874 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold747 SAMTools SNP 295925 295925 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C12%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C100:99 scaffold747 SAMTools SNP 298288 298288 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold747 SAMTools SNP 298297 298297 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.22%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold747 SAMTools SNP 298625 298625 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold747 SAMTools SNP 299144 299144 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C6%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.37%2C0.01%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold747 SAMTools SNP 299666 299666 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C36%2C6%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.012%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold747 SAMTools SNP 302321 302321 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold747 SAMTools SNP 303175 303175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.52%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold747 SAMTools SNP 303679 303679 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C3%2C27%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.68%2C1.3e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold747 SAMTools SNP 303793 303793 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold747 SAMTools SNP 306113 306113 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold747 SAMTools SNP 307136 307136 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C118:46 scaffold747 SAMTools SNP 307371 307371 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold747 SAMTools SNP 307716 307716 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C71:31 scaffold747 SAMTools SNP 307753 307753 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold747 SAMTools SNP 307802 307802 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C71:74 scaffold747 SAMTools SNP 308596 308596 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold747 SAMTools SNP 308640 308640 12.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold747 SAMTools SNP 313386 313386 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C54%2C0:99 scaffold747 SAMTools SNP 313750 313750 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 314833 314833 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold747 SAMTools SNP 317948 317948 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold747 SAMTools SNP 317988 317988 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold747 SAMTools SNP 318018 318018 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.55%2C0.0036%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C181:73 scaffold747 SAMTools SNP 318620 318620 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold747 SAMTools SNP 321669 321669 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold747 SAMTools SNP 321691 321691 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold747 SAMTools SNP 322433 322433 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C2.9e-05%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold747 SAMTools SNP 322448 322448 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold747 SAMTools SNP 325222 325222 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C239:99 scaffold747 SAMTools SNP 325267 325267 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.12%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C206:99 scaffold747 SAMTools SNP 325342 325342 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.00079%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C254:46 scaffold747 SAMTools SNP 325836 325836 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold747 SAMTools SNP 328332 328332 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold747 SAMTools SNP 329692 329692 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C39%2C0:72 scaffold747 SAMTools SNP 332460 332460 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold747 SAMTools SNP 332943 332943 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold747 SAMTools SNP 335289 335289 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold747 SAMTools SNP 341182 341182 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold747 SAMTools SNP 344138 344138 81 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold747 SAMTools SNP 411354 411354 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.25%2C0.12%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold747 SAMTools SNP 411390 411390 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold747 SAMTools SNP 411416 411416 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold747 SAMTools SNP 413753 413753 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 413810 413810 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold747 SAMTools SNP 416244 416244 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold747 SAMTools SNP 449340 449340 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold747 SAMTools SNP 453908 453908 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold747 SAMTools SNP 454025 454025 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D6.98%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C82:33 scaffold747 SAMTools SNP 454341 454341 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold747 SAMTools SNP 455178 455178 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0005%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C32:35 scaffold747 SAMTools SNP 466990 466990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold748 SAMTools SNP 1736 1736 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold748 SAMTools SNP 1754 1754 67 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold748 SAMTools SNP 1833 1833 36.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold748 SAMTools SNP 1848 1848 31.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold748 SAMTools SNP 2694 2694 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold748 SAMTools SNP 2729 2729 79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C24%2C0:45 scaffold748 SAMTools SNP 166278 166278 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold748 SAMTools SNP 166802 166802 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold748 SAMTools SNP 179136 179136 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C24%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.3%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 181667 181667 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.16%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold748 SAMTools SNP 183161 183161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold748 SAMTools SNP 184066 184066 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.47%2C4e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold748 SAMTools SNP 184094 184094 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C8.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C188:99 scaffold748 SAMTools SNP 191634 191634 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.6%3BPV4%3D0.33%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C42:28 scaffold748 SAMTools SNP 191646 191646 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold748 SAMTools SNP 191767 191767 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold748 SAMTools SNP 191821 191821 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold748 SAMTools SNP 191961 191961 49.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C12%2C0:21 scaffold748 SAMTools SNP 192106 192106 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C26%2C45%2C18%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.86%2C1.2e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold748 SAMTools SNP 192118 192118 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C4%2C40%2C9%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.07%2C1.5e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold748 SAMTools SNP 192192 192192 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C8%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.00015%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 192684 192684 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C2%2C14%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.6%2C3.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold748 SAMTools SNP 194825 194825 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold748 SAMTools SNP 194914 194914 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold748 SAMTools SNP 195419 195419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C86%2C73%2C92%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.51%2C1.5e-17%2C0.42%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 197806 197806 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold748 SAMTools SNP 197842 197842 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold748 SAMTools SNP 198178 198178 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C69%2C3%2C14%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.36%2C0.0058%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold748 SAMTools SNP 198181 198181 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C64%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 198377 198377 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C6%2C71%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 198941 198941 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C9%2C23%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1.7e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 198947 198947 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C10%2C25%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1.5e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 199055 199055 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold748 SAMTools SNP 199457 199457 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C60%2C0%2C30%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.0015%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold748 SAMTools SNP 199463 199463 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold748 SAMTools SNP 200570 200570 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C25%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold748 SAMTools SNP 200597 200597 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C19%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold748 SAMTools SNP 202408 202408 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C10%2C14%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0073%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 202567 202567 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C39%2C4%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold748 SAMTools SNP 202918 202918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C37%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 203269 203269 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D445%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C226%2C0%2C107%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C9.6e-07%2C1%2C5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold748 SAMTools SNP 203349 203349 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold748 SAMTools SNP 208435 208435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold748 SAMTools SNP 211588 211588 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C75%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold748 SAMTools SNP 214054 214054 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold748 SAMTools SNP 214117 214117 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold748 SAMTools SNP 217313 217313 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold748 SAMTools SNP 217388 217388 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold748 SAMTools SNP 219052 219052 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.18%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C196:99 scaffold748 SAMTools SNP 219835 219835 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C9.8e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C202:48 scaffold748 SAMTools SNP 219861 219861 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C18%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.31%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 219894 219894 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C51%2C16%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 220227 220227 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C54%2C56%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold748 SAMTools SNP 221574 221574 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.43%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold748 SAMTools SNP 221609 221609 106 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold748 SAMTools SNP 222545 222545 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold748 SAMTools SNP 222770 222770 26.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold748 SAMTools SNP 223019 223019 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2.1e-19%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C91:39 scaffold748 SAMTools SNP 223103 223103 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.25%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C132:86 scaffold748 SAMTools SNP 232655 232655 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold748 SAMTools SNP 232679 232679 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold748 SAMTools SNP 257412 257412 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D39%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C63%2C0:99 scaffold748 SAMTools SNP 263976 263976 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold748 SAMTools SNP 264014 264014 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold748 SAMTools SNP 264035 264035 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C0.17%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold748 SAMTools SNP 273494 273494 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold748 SAMTools SNP 275666 275666 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold748 SAMTools SNP 275674 275674 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold748 SAMTools SNP 275704 275704 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold748 SAMTools SNP 282647 282647 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D42%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C75:78 scaffold748 SAMTools SNP 282997 282997 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D25%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold748 SAMTools SNP 284161 284161 52.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C3%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D0.46%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C5%2C0:9 scaffold748 SAMTools SNP 284396 284396 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold748 SAMTools SNP 284429 284429 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold748 SAMTools SNP 320820 320820 46.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C12%2C0:21 scaffold748 SAMTools SNP 321066 321066 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold748 SAMTools SNP 321103 321103 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold748 SAMTools SNP 321128 321128 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold748 SAMTools SNP 321415 321415 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C228:95 scaffold748 SAMTools SNP 321421 321421 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.45%2C0.44%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C210:78 scaffold75 SAMTools SNP 1619 1619 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold75 SAMTools SNP 1709 1709 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 1712 1712 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 41642 41642 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold75 SAMTools SNP 44186 44186 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold75 SAMTools SNP 44705 44705 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold75 SAMTools SNP 46853 46853 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 47084 47084 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 85385 85385 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C29%2C12%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold75 SAMTools SNP 99176 99176 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold75 SAMTools SNP 102585 102585 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 102597 102597 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold75 SAMTools SNP 108635 108635 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C50%2C4%3BMQ%3D49%3BFQ%3D16.1%3BPV4%3D1%2C0.14%2C0.28%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C43:46 scaffold75 SAMTools SNP 108712 108712 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold75 SAMTools SNP 108773 108773 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold75 SAMTools SNP 110283 110283 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.093%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold75 SAMTools SNP 110346 110346 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C32%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C216:99 scaffold75 SAMTools SNP 111350 111350 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold75 SAMTools SNP 112295 112295 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold75 SAMTools SNP 112391 112391 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0057%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C12:15 scaffold75 SAMTools SNP 117011 117011 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold75 SAMTools SNP 117642 117642 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C207:99 scaffold75 SAMTools SNP 118503 118503 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold75 SAMTools SNP 120047 120047 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold75 SAMTools SNP 120804 120804 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold75 SAMTools SNP 120829 120829 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold75 SAMTools SNP 121118 121118 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold75 SAMTools SNP 124728 124728 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold75 SAMTools SNP 124758 124758 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold75 SAMTools SNP 124903 124903 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C23:26 scaffold75 SAMTools SNP 124924 124924 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold75 SAMTools SNP 125661 125661 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0065%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold75 SAMTools SNP 125974 125974 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D32%3BFQ%3D8.11%3BPV4%3D0.4%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C43:36 scaffold75 SAMTools SNP 128518 128518 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D24%3BFQ%3D-28%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C1%2C0:4 scaffold750 SAMTools SNP 3228 3228 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 7253 7253 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold750 SAMTools SNP 7282 7282 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 7307 7307 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 7465 7465 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 7599 7599 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold750 SAMTools SNP 7771 7771 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold750 SAMTools SNP 62446 62446 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.3%2C4.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold750 SAMTools SNP 62650 62650 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold750 SAMTools SNP 63371 63371 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C24%2C33%2C16%3BMQ%3D41%3BFQ%3D73%3BPV4%3D0.42%2C8.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold750 SAMTools SNP 63516 63516 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0440%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D65%2C70%2C7%2C54%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D4e-07%2C3.9e-115%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold750 SAMTools SNP 64090 64090 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C30%2C2%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D0.011%2C1.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold750 SAMTools SNP 64373 64373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C334%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold750 SAMTools SNP 64939 64939 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold750 SAMTools SNP 68255 68255 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold750 SAMTools SNP 69326 69326 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.0081%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold750 SAMTools SNP 70385 70385 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold750 SAMTools SNP 70410 70410 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold750 SAMTools SNP 70528 70528 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 78028 78028 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C41:44 scaffold750 SAMTools SNP 78129 78129 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold750 SAMTools SNP 78471 78471 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C30%2C0:57 scaffold750 SAMTools SNP 78492 78492 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold750 SAMTools SNP 80430 80430 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C24%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C251:99 scaffold750 SAMTools SNP 82533 82533 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C28%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold750 SAMTools SNP 85637 85637 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C16%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 85664 85664 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 86208 86208 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 86209 86209 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 86255 86255 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold750 SAMTools SNP 86257 86257 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold750 SAMTools SNP 90045 90045 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C4.4e-54%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 91473 91473 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold750 SAMTools SNP 91944 91944 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold750 SAMTools SNP 91968 91968 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C223:66 scaffold750 SAMTools SNP 92626 92626 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C208:99 scaffold750 SAMTools SNP 92709 92709 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold750 SAMTools SNP 93095 93095 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.016%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 93218 93218 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 94376 94376 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.088%2C7.1e-19%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold750 SAMTools SNP 101423 101423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold750 SAMTools SNP 101453 101453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold750 SAMTools SNP 102685 102685 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 103447 103447 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C39%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold750 SAMTools SNP 105513 105513 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C22%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold750 SAMTools SNP 106072 106072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold750 SAMTools SNP 107277 107277 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C52%2C0%2C8%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.34%2C0.32%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold750 SAMTools SNP 107278 107278 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.089%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold750 SAMTools SNP 107878 107878 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold750 SAMTools SNP 125990 125990 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 129006 129006 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 129843 129843 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 129859 129859 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold750 SAMTools SNP 131145 131145 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold750 SAMTools SNP 143181 143181 59.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold750 SAMTools SNP 143569 143569 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C36%2C0:69 scaffold750 SAMTools SNP 143626 143626 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C0%3BMQ%3D34%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C206:33 scaffold750 SAMTools SNP 144016 144016 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C5%2C50%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 144064 144064 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C10%2C12%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.55%2C0.0051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 144527 144527 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D40%3BFQ%3D45%3BPV4%3D1%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C122:75 scaffold750 SAMTools SNP 145084 145084 55.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D14%2C0%2C5%2C8%3BMQ%3D27%3BFQ%3D-34%3BPV4%3D0.00058%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C7%2C0:12 scaffold750 SAMTools SNP 145654 145654 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C19%3BMQ%3D33%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold750 SAMTools SNP 146024 146024 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C9%3BMQ%3D40%3BFQ%3D170%3BPV4%3D0.054%2C0.11%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold750 SAMTools SNP 146087 146087 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D49%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold750 SAMTools SNP 146099 146099 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C3%3BMQ%3D48%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold750 SAMTools SNP 146489 146489 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold750 SAMTools SNP 146513 146513 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C2%3BMQ%3D45%3BFQ%3D105%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C132:99 scaffold750 SAMTools SNP 147412 147412 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold750 SAMTools SNP 147460 147460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C108%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold750 SAMTools SNP 148011 148011 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C106%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold750 SAMTools SNP 148323 148323 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 150137 150137 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C119:34 scaffold750 SAMTools SNP 150868 150868 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C87%2C0:99 scaffold750 SAMTools SNP 150921 150921 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C3.3e-26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold750 SAMTools SNP 153053 153053 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C115%2C9%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-05%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 153059 153059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D520%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C188%2C21%2C269%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 153333 153333 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D978%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D206%2C316%2C244%2C212%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C0.26%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 153866 153866 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C178%2C9%2C163%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.08%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 153873 153873 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C288%2C1%2C123%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C2e-36%2C1%2C2.1e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold750 SAMTools SNP 154939 154939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C53%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold750 SAMTools SNP 158911 158911 4.75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold750 SAMTools SNP 243626 243626 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 244039 244039 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 252317 252317 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.085%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold750 SAMTools SNP 252319 252319 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C3%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.045%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold750 SAMTools SNP 254642 254642 186 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C15%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.29%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C249:99 scaffold750 SAMTools SNP 254686 254686 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C137:36 scaffold750 SAMTools SNP 269581 269581 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.017%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C114:39 scaffold750 SAMTools SNP 269586 269586 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold750 SAMTools SNP 273475 273475 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold750 SAMTools SNP 282804 282804 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold750 SAMTools SNP 290231 290231 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D60.4%3BPV4%3D1%2C3e-23%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C96:90 scaffold750 SAMTools SNP 293628 293628 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold750 SAMTools SNP 341409 341409 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C39%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C126%2C0:99 scaffold750 SAMTools SNP 341497 341497 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D48%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C75%2C0:99 scaffold750 SAMTools SNP 341942 341942 106 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C18%2C0:33 scaffold750 SAMTools SNP 342736 342736 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold750 SAMTools SNP 342764 342764 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 350346 350346 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold750 SAMTools SNP 354882 354882 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 426412 426412 24.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold750 SAMTools SNP 426592 426592 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold750 SAMTools SNP 426696 426696 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold750 SAMTools SNP 439992 439992 31.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold750 SAMTools SNP 459792 459792 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 460327 460327 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold750 SAMTools SNP 464465 464465 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 464538 464538 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold750 SAMTools SNP 490716 490716 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold750 SAMTools SNP 491129 491129 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold750 SAMTools SNP 491162 491162 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold750 SAMTools SNP 493521 493521 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 493557 493557 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold750 SAMTools SNP 493560 493560 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold750 SAMTools SNP 494265 494265 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold750 SAMTools SNP 494453 494453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold750 SAMTools SNP 494477 494477 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold750 SAMTools SNP 547732 547732 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D764%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D333%2C30%2C147%2C184%3BMQ%3D46%3BFQ%3D225%3BPV4%3D4.1e-44%2C0.39%2C0.33%2C4.2e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 547775 547775 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1410%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C454%2C729%2C83%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1.3e-153%2C1%2C1%2C1.7e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 548641 548641 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1374%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D684%2C156%2C95%2C421%3BMQ%3D46%3BFQ%3D225%3BPV4%3D2.6e-121%2C1%2C0.1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold750 SAMTools SNP 549920 549920 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 551291 551291 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C30%2C0:57 scaffold750 SAMTools SNP 552817 552817 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold750 SAMTools SNP 552859 552859 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold750 SAMTools SNP 554300 554300 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 554314 554314 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 554324 554324 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold750 SAMTools SNP 554654 554654 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold750 SAMTools SNP 555630 555630 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold750 SAMTools SNP 556414 556414 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold750 SAMTools SNP 615540 615540 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold750 SAMTools SNP 621619 621619 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold750 SAMTools SNP 621696 621696 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold750 SAMTools SNP 621715 621715 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold750 SAMTools SNP 622611 622611 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold750 SAMTools SNP 628806 628806 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold750 SAMTools SNP 628908 628908 95.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C21%2C0:39 scaffold750 SAMTools SNP 632016 632016 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 632502 632502 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 633564 633564 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 633733 633733 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold750 SAMTools SNP 634854 634854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold750 SAMTools SNP 634982 634982 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C4.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold750 SAMTools SNP 635005 635005 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold750 SAMTools SNP 635949 635949 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold750 SAMTools SNP 635953 635953 96.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C23%2C37%2C109%2C0%2C126:17 scaffold750 SAMTools SNP 636221 636221 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold750 SAMTools SNP 636688 636688 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold750 SAMTools SNP 636697 636697 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold750 SAMTools SNP 637312 637312 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold750 SAMTools SNP 637484 637484 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold750 SAMTools SNP 637509 637509 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold750 SAMTools SNP 637517 637517 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold750 SAMTools SNP 637640 637640 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold750 SAMTools SNP 638547 638547 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold750 SAMTools SNP 638561 638561 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold750 SAMTools SNP 640275 640275 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 640308 640308 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 641615 641615 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold750 SAMTools SNP 641749 641749 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 642875 642875 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold750 SAMTools SNP 645575 645575 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold750 SAMTools SNP 646446 646446 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold750 SAMTools SNP 646464 646464 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold750 SAMTools SNP 646508 646508 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold750 SAMTools SNP 647195 647195 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.24%2C5.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold750 SAMTools SNP 647267 647267 54.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C15%2C0:27 scaffold750 SAMTools SNP 647318 647318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold750 SAMTools SNP 648163 648163 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.072%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold750 SAMTools SNP 648175 648175 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.081%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold750 SAMTools SNP 648182 648182 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.23%2C1%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold750 SAMTools SNP 650819 650819 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C5%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold750 SAMTools SNP 652523 652523 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C16%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.15%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold750 SAMTools SNP 708188 708188 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold751 SAMTools SNP 1725 1725 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold751 SAMTools SNP 1743 1743 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C90:43 scaffold751 SAMTools SNP 1773 1773 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold751 SAMTools SNP 10178 10178 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold751 SAMTools SNP 10215 10215 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold751 SAMTools SNP 63683 63683 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 67230 67230 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 72165 72165 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 72178 72178 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 73445 73445 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 73488 73488 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 73859 73859 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 76793 76793 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 79697 79697 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 81796 81796 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold751 SAMTools SNP 84073 84073 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold751 SAMTools SNP 84081 84081 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold751 SAMTools SNP 84882 84882 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold751 SAMTools SNP 85009 85009 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C24%2C0:45 scaffold751 SAMTools SNP 85099 85099 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold751 SAMTools SNP 88952 88952 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold751 SAMTools SNP 89246 89246 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold751 SAMTools SNP 90392 90392 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold751 SAMTools SNP 92792 92792 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold751 SAMTools SNP 98754 98754 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold751 SAMTools SNP 116684 116684 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold751 SAMTools SNP 117689 117689 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold751 SAMTools SNP 117706 117706 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.4%2C0.00053%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C85:44 scaffold751 SAMTools SNP 154256 154256 47.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold751 SAMTools SNP 155840 155840 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold751 SAMTools SNP 160197 160197 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold751 SAMTools SNP 167453 167453 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C5.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold751 SAMTools SNP 167495 167495 65 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.21%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold751 SAMTools SNP 167516 167516 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.12%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold751 SAMTools SNP 171410 171410 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.57%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold751 SAMTools SNP 179119 179119 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 179298 179298 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C26%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 179306 179306 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C28%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 186410 186410 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C55%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold751 SAMTools SNP 235296 235296 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold751 SAMTools SNP 236358 236358 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C10%2C10%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.55%2C4.7e-11%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold751 SAMTools SNP 236505 236505 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold751 SAMTools SNP 236532 236532 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.5%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold751 SAMTools SNP 236899 236899 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 238901 238901 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold751 SAMTools SNP 239082 239082 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.42%2C0.39%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold751 SAMTools SNP 239709 239709 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold751 SAMTools SNP 239939 239939 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold751 SAMTools SNP 239984 239984 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.18%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold751 SAMTools SNP 240046 240046 170 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold751 SAMTools SNP 241352 241352 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 241367 241367 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C17%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 241939 241939 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0049%2C0.18%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 242511 242511 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C20%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.11%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold751 SAMTools SNP 242803 242803 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold751 SAMTools SNP 242923 242923 8.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold751 SAMTools SNP 243070 243070 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C15%2C0:27 scaffold751 SAMTools SNP 243149 243149 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold751 SAMTools SNP 243247 243247 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold751 SAMTools SNP 243319 243319 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold751 SAMTools SNP 243803 243803 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C2.2e-07%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C244:99 scaffold751 SAMTools SNP 244808 244808 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold751 SAMTools SNP 244811 244811 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold751 SAMTools SNP 244895 244895 135 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold751 SAMTools SNP 245795 245795 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold751 SAMTools SNP 245859 245859 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C18%2C0:33 scaffold751 SAMTools SNP 248521 248521 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 258923 258923 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.00041%2C4.1e-06%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold751 SAMTools SNP 258938 258938 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1.5e-06%2C1.7e-16%2C1%2C3.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold751 SAMTools SNP 260997 260997 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.49%2C0.014%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C218:56 scaffold751 SAMTools SNP 261398 261398 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 263459 263459 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C13%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.065%2C8.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C169:69 scaffold751 SAMTools SNP 264606 264606 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C55%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold751 SAMTools SNP 264648 264648 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C2%2C32%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.18%2C1.6e-72%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold751 SAMTools SNP 264817 264817 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C132:39 scaffold751 SAMTools SNP 265008 265008 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.0075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C197:84 scaffold751 SAMTools SNP 265711 265711 21 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold751 SAMTools SNP 266120 266120 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold751 SAMTools SNP 274433 274433 16.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold751 SAMTools SNP 274892 274892 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.58%2C2.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold751 SAMTools SNP 277181 277181 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C33%2C0:63 scaffold751 SAMTools SNP 277244 277244 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D468%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold751 SAMTools SNP 280612 280612 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C108:82 scaffold751 SAMTools SNP 280747 280747 43.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold751 SAMTools SNP 281773 281773 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C26%2C8%2C20%3BMQ%3D38%3BFQ%3D13.2%3BPV4%3D0.00069%2C1.8e-27%2C5.1e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold751 SAMTools SNP 282520 282520 57 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C14%2C17%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0055%2C1.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold751 SAMTools SNP 284649 284649 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C15%2C0:27 scaffold751 SAMTools SNP 284695 284695 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C0%2C15%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.00088%2C0.00012%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold751 SAMTools SNP 284729 284729 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C7%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 285241 285241 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C24%2C4%3BMQ%3D30%3BFQ%3D193%3BPV4%3D0.39%2C1e-05%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold751 SAMTools SNP 290409 290409 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 295122 295122 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 295125 295125 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 300770 300770 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold751 SAMTools SNP 301367 301367 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold751 SAMTools SNP 301430 301430 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold751 SAMTools SNP 301692 301692 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.44%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C106:99 scaffold751 SAMTools SNP 301756 301756 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold751 SAMTools SNP 302194 302194 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D32.9%3BPV4%3D0.4%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C77:63 scaffold751 SAMTools SNP 305562 305562 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold751 SAMTools SNP 305776 305776 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold751 SAMTools SNP 305832 305832 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C138:59 scaffold751 SAMTools SNP 306322 306322 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold751 SAMTools SNP 306324 306324 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold751 SAMTools SNP 306394 306394 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold751 SAMTools SNP 306395 306395 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold751 SAMTools SNP 315920 315920 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold751 SAMTools SNP 315968 315968 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C173:72 scaffold751 SAMTools SNP 317526 317526 118 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C168:99 scaffold751 SAMTools SNP 318074 318074 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.22%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C211:99 scaffold751 SAMTools SNP 320557 320557 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 320595 320595 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold751 SAMTools SNP 322199 322199 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 322249 322249 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.14%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold751 SAMTools SNP 322462 322462 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C136:76 scaffold751 SAMTools SNP 354083 354083 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C230:99 scaffold751 SAMTools SNP 354089 354089 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold751 SAMTools SNP 354090 354090 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold751 SAMTools SNP 354519 354519 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.014%2C0.14%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold751 SAMTools SNP 355014 355014 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C27%2C0:50 scaffold751 SAMTools SNP 355140 355140 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.061%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold751 SAMTools SNP 366211 366211 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold751 SAMTools SNP 366239 366239 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold751 SAMTools SNP 366249 366249 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold751 SAMTools SNP 366266 366266 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold751 SAMTools SNP 369373 369373 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 369754 369754 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold751 SAMTools SNP 369774 369774 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold751 SAMTools SNP 369787 369787 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 370614 370614 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 370643 370643 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 370871 370871 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 371081 371081 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 372501 372501 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 372564 372564 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold751 SAMTools SNP 372719 372719 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold751 SAMTools SNP 376561 376561 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold751 SAMTools SNP 376857 376857 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold751 SAMTools SNP 377134 377134 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold751 SAMTools SNP 377158 377158 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold751 SAMTools SNP 377443 377443 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold751 SAMTools SNP 377453 377453 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold751 SAMTools SNP 378343 378343 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold751 SAMTools SNP 381120 381120 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold751 SAMTools SNP 381431 381431 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold751 SAMTools SNP 381762 381762 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold751 SAMTools SNP 381787 381787 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold751 SAMTools SNP 384250 384250 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold751 SAMTools SNP 385986 385986 9.49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold751 SAMTools SNP 386027 386027 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C66%2C0:99 scaffold751 SAMTools SNP 386074 386074 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold751 SAMTools SNP 386878 386878 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C111%2C0:99 scaffold751 SAMTools SNP 387109 387109 123 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1381%3BVDB%3D0.0394%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C16%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D0.55%2C6.2e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C19:22 scaffold751 SAMTools SNP 387128 387128 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1469%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C54:57 scaffold751 SAMTools SNP 392385 392385 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D392%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C36%2C0:69 scaffold751 SAMTools SNP 393051 393051 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C34%2C76%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 393438 393438 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C4%2C13%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.00025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold751 SAMTools SNP 393474 393474 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D436%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold751 SAMTools SNP 393752 393752 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C116%2C46%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C7.9e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 393785 393785 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C29%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.2e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 394014 394014 25 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.1%2C0.43%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold751 SAMTools SNP 396720 396720 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.63%3BPV4%3D1%2C1.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C35:38 scaffold751 SAMTools SNP 398584 398584 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 399279 399279 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C52%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold751 SAMTools SNP 399763 399763 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.44%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold751 SAMTools SNP 399779 399779 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold751 SAMTools SNP 400658 400658 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold751 SAMTools SNP 400683 400683 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold751 SAMTools SNP 400707 400707 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold751 SAMTools SNP 402444 402444 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C9%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold751 SAMTools SNP 402471 402471 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 407541 407541 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold751 SAMTools SNP 407645 407645 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C36%2C0:69 scaffold751 SAMTools SNP 407794 407794 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C27%2C0:47 scaffold751 SAMTools SNP 410314 410314 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C50%2C38%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 411116 411116 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C3%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 412241 412241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 416768 416768 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C74:77 scaffold751 SAMTools SNP 416841 416841 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold751 SAMTools SNP 417356 417356 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold751 SAMTools SNP 417390 417390 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold751 SAMTools SNP 417485 417485 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold751 SAMTools SNP 417807 417807 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold751 SAMTools SNP 417821 417821 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 417860 417860 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold751 SAMTools SNP 422014 422014 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold751 SAMTools SNP 422058 422058 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold751 SAMTools SNP 422301 422301 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold751 SAMTools SNP 422610 422610 159 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold751 SAMTools SNP 424085 424085 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 424138 424138 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.022%2C9.1e-05%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold751 SAMTools SNP 424718 424718 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold751 SAMTools SNP 426797 426797 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold751 SAMTools SNP 426880 426880 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.3%2C0.17%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold751 SAMTools SNP 428084 428084 38.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold751 SAMTools SNP 428390 428390 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C4%2C18%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.01%2C3.7e-26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C214:37 scaffold751 SAMTools SNP 429178 429178 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold751 SAMTools SNP 430819 430819 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold751 SAMTools SNP 430831 430831 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C251:66 scaffold751 SAMTools SNP 430871 430871 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.25%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C199:50 scaffold751 SAMTools SNP 431060 431060 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C238:99 scaffold751 SAMTools SNP 431578 431578 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 431699 431699 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C154:85 scaffold751 SAMTools SNP 431977 431977 207 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C21%2C0:39 scaffold751 SAMTools SNP 432206 432206 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.45%2C2e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold751 SAMTools SNP 432228 432228 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold751 SAMTools SNP 432351 432351 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold751 SAMTools SNP 432748 432748 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 433279 433279 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold751 SAMTools SNP 433529 433529 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 434073 434073 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold751 SAMTools SNP 434091 434091 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold751 SAMTools SNP 434774 434774 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold751 SAMTools SNP 434946 434946 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 434970 434970 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold751 SAMTools SNP 435370 435370 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold751 SAMTools SNP 446325 446325 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D449%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold751 SAMTools SNP 448866 448866 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C9%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.32%2C4.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C183:99 scaffold751 SAMTools SNP 449031 449031 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C41%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.6e-15%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 449156 449156 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold751 SAMTools SNP 449210 449210 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold751 SAMTools SNP 449518 449518 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold751 SAMTools SNP 450475 450475 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold751 SAMTools SNP 451630 451630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold751 SAMTools SNP 452950 452950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.44%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 452986 452986 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold751 SAMTools SNP 452989 452989 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold751 SAMTools SNP 453132 453132 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold751 SAMTools SNP 453349 453349 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold751 SAMTools SNP 453363 453363 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.064%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold751 SAMTools SNP 453415 453415 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C14%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.2%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold751 SAMTools SNP 454239 454239 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold751 SAMTools SNP 454367 454367 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C25%2C6%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.023%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold751 SAMTools SNP 454395 454395 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 454883 454883 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 454904 454904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C27%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold751 SAMTools SNP 455219 455219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C37%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.25%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 455267 455267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C59%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold751 SAMTools SNP 456427 456427 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D0.067%2C0.49%2C1%2C8.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold751 SAMTools SNP 456442 456442 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C49:52 scaffold751 SAMTools SNP 457532 457532 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C23%2C19%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00015%2C2.8e-11%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold751 SAMTools SNP 457570 457570 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C23%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.00031%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold751 SAMTools SNP 457588 457588 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C33%2C12%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C5.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 457603 457603 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C28%3BMQ%3D50%3BFQ%3D218%3BPV4%3D4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold751 SAMTools SNP 458012 458012 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold751 SAMTools SNP 458132 458132 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.42%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold751 SAMTools SNP 458201 458201 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold751 SAMTools SNP 458397 458397 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C3%2C61%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold751 SAMTools SNP 458445 458445 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C60%2C4%2C20%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.42%2C0.00039%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold751 SAMTools SNP 458499 458499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C169%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold751 SAMTools SNP 458647 458647 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C67%2C2%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 459789 459789 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C4%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 460104 460104 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C30%2C2%2C10%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold751 SAMTools SNP 460119 460119 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C1%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.0001%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold751 SAMTools SNP 460372 460372 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 463978 463978 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold751 SAMTools SNP 471464 471464 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold751 SAMTools SNP 471469 471469 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold751 SAMTools SNP 471578 471578 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold751 SAMTools SNP 472213 472213 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold751 SAMTools SNP 472812 472812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold751 SAMTools SNP 472851 472851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C33%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold751 SAMTools SNP 473119 473119 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C21%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold751 SAMTools SNP 473128 473128 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C14%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.48%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 473964 473964 123 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C16%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D9.8e-07%2C6.9e-11%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold751 SAMTools SNP 474085 474085 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 474570 474570 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold751 SAMTools SNP 475980 475980 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 476268 476268 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C13%2C32%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold751 SAMTools SNP 477864 477864 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold751 SAMTools SNP 477876 477876 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.092%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C223:99 scaffold751 SAMTools SNP 478066 478066 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.11%2C0.15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold751 SAMTools SNP 478334 478334 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold751 SAMTools SNP 478834 478834 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold751 SAMTools SNP 482568 482568 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold751 SAMTools SNP 484657 484657 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold752 SAMTools SNP 4140 4140 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 4694 4694 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 9532 9532 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C246:99 scaffold752 SAMTools SNP 9553 9553 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.09%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold752 SAMTools SNP 10106 10106 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold752 SAMTools SNP 10734 10734 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold752 SAMTools SNP 11417 11417 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C9%3BMQ%3D50%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C1:4 scaffold752 SAMTools SNP 11471 11471 96.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C21%2C0:39 scaffold752 SAMTools SNP 19683 19683 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold752 SAMTools SNP 23225 23225 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold752 SAMTools SNP 23284 23284 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 25436 25436 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 26524 26524 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold752 SAMTools SNP 48564 48564 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold752 SAMTools SNP 48592 48592 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold752 SAMTools SNP 48614 48614 7.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold752 SAMTools SNP 51560 51560 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold752 SAMTools SNP 51573 51573 30.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold752 SAMTools SNP 51668 51668 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 56604 56604 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold752 SAMTools SNP 56635 56635 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold752 SAMTools SNP 56686 56686 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold752 SAMTools SNP 56689 56689 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold752 SAMTools SNP 56692 56692 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold752 SAMTools SNP 56698 56698 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold752 SAMTools SNP 70971 70971 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C1%2C6%3BMQ%3D49%3BFQ%3D157%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold752 SAMTools SNP 71627 71627 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C20:51 scaffold752 SAMTools SNP 73342 73342 135 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D16%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C175%2C0:99 scaffold752 SAMTools SNP 73408 73408 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C3%2C7%2C3%3BMQ%3D29%3BFQ%3D138%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C192:99 scaffold752 SAMTools SNP 73798 73798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C48%2C15%2C15%3BMQ%3D33%3BFQ%3D225%3BPV4%3D0.0078%2C0.078%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold752 SAMTools SNP 75480 75480 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C12%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D3.7e-05%2C5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold752 SAMTools SNP 75961 75961 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C0.43%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold752 SAMTools SNP 76594 76594 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.53%2C0.0037%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold752 SAMTools SNP 76825 76825 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold752 SAMTools SNP 76840 76840 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.024%2C0.38%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold752 SAMTools SNP 77285 77285 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold752 SAMTools SNP 78285 78285 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold752 SAMTools SNP 78312 78312 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.28%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C205:99 scaffold752 SAMTools SNP 78840 78840 75 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold752 SAMTools SNP 79090 79090 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold752 SAMTools SNP 79982 79982 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold752 SAMTools SNP 80021 80021 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold752 SAMTools SNP 80090 80090 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold752 SAMTools SNP 104807 104807 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C105:40 scaffold752 SAMTools SNP 104815 104815 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold752 SAMTools SNP 105815 105815 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold752 SAMTools SNP 106497 106497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold752 SAMTools SNP 106504 106504 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold752 SAMTools SNP 106515 106515 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.35%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold752 SAMTools SNP 106518 106518 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold752 SAMTools SNP 107268 107268 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.16%2C0.11%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold752 SAMTools SNP 107280 107280 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.024%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C235:99 scaffold752 SAMTools SNP 107498 107498 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold752 SAMTools SNP 107507 107507 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold752 SAMTools SNP 109116 109116 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold752 SAMTools SNP 109257 109257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold752 SAMTools SNP 109613 109613 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold752 SAMTools SNP 109661 109661 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold752 SAMTools SNP 109685 109685 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold752 SAMTools SNP 112735 112735 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold752 SAMTools SNP 112975 112975 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold752 SAMTools SNP 113848 113848 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold752 SAMTools SNP 114004 114004 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold752 SAMTools SNP 114353 114353 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold752 SAMTools SNP 114458 114458 51.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold752 SAMTools SNP 114461 114461 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.21%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C124:46 scaffold752 SAMTools SNP 117342 117342 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold752 SAMTools SNP 117387 117387 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold752 SAMTools SNP 118430 118430 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 118442 118442 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 118448 118448 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold752 SAMTools SNP 144310 144310 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold752 SAMTools SNP 241784 241784 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold752 SAMTools SNP 241796 241796 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold752 SAMTools SNP 248607 248607 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold752 SAMTools SNP 248874 248874 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold752 SAMTools SNP 248875 248875 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 7147 7147 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold753 SAMTools SNP 14516 14516 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold753 SAMTools SNP 19237 19237 44.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold753 SAMTools SNP 19691 19691 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D31.9%3BPV4%3D0.46%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C76:62 scaffold753 SAMTools SNP 39030 39030 176 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold753 SAMTools SNP 40154 40154 119 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C39%2C0:75 scaffold753 SAMTools SNP 40669 40669 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 46110 46110 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold753 SAMTools SNP 46248 46248 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.013%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C240:99 scaffold753 SAMTools SNP 46831 46831 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 47424 47424 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold753 SAMTools SNP 47617 47617 23.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold753 SAMTools SNP 54792 54792 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold753 SAMTools SNP 55322 55322 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 55355 55355 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C8%2C32%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.018%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold753 SAMTools SNP 56854 56854 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.27%2C0.47%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold753 SAMTools SNP 56872 56872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold753 SAMTools SNP 56878 56878 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C4%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.55%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold753 SAMTools SNP 58283 58283 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 58316 58316 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C5%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.075%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold753 SAMTools SNP 58343 58343 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C5.3e-12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 58406 58406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 61533 61533 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C1%2C12%3BMQ%3D49%3BFQ%3D106%3BPV4%3D0.0001%2C1%2C2.7e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold753 SAMTools SNP 63719 63719 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C67%2C5%2C4%3BMQ%3D49%3BFQ%3D5.47%3BPV4%3D0.032%2C1%2C2.6e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold753 SAMTools SNP 64894 64894 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D45%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold753 SAMTools SNP 65644 65644 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold753 SAMTools SNP 65683 65683 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold753 SAMTools SNP 66128 66128 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold753 SAMTools SNP 66170 66170 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold753 SAMTools SNP 66491 66491 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold753 SAMTools SNP 66530 66530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold753 SAMTools SNP 68299 68299 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold753 SAMTools SNP 68322 68322 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.47%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold753 SAMTools SNP 68337 68337 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.009%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold753 SAMTools SNP 68710 68710 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.5e-10%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C69:47 scaffold753 SAMTools SNP 68782 68782 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C2.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C152:48 scaffold753 SAMTools SNP 69176 69176 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C111%2C0:90 scaffold753 SAMTools SNP 119177 119177 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 119228 119228 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 119255 119255 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 119449 119449 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold753 SAMTools SNP 120325 120325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 120327 120327 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 120338 120338 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 120364 120364 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold753 SAMTools SNP 120604 120604 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 120684 120684 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold753 SAMTools SNP 120821 120821 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold753 SAMTools SNP 121721 121721 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 122290 122290 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold753 SAMTools SNP 122320 122320 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 122392 122392 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-30%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C3%2C0:6 scaffold753 SAMTools SNP 122821 122821 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C0%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold753 SAMTools SNP 122869 122869 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.28%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 122929 122929 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold753 SAMTools SNP 122950 122950 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C52%2C1%2C32%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0017%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold753 SAMTools SNP 123447 123447 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold753 SAMTools SNP 123468 123468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold753 SAMTools SNP 123486 123486 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold753 SAMTools SNP 123789 123789 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 123818 123818 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 123858 123858 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C10%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold753 SAMTools SNP 124119 124119 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C10%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 124155 124155 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C18%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.31%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 124444 124444 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold753 SAMTools SNP 124934 124934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C24%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold753 SAMTools SNP 124936 124936 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C35%2C3%2C6%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold753 SAMTools SNP 125015 125015 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C24%2C10%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold753 SAMTools SNP 125026 125026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C4%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold753 SAMTools SNP 125045 125045 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C8%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold753 SAMTools SNP 125322 125322 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C20%3BMQ%3D50%3BFQ%3D-134%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C107%2C0:99 scaffold753 SAMTools SNP 125849 125849 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C37%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold753 SAMTools SNP 125876 125876 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold753 SAMTools SNP 126041 126041 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 126094 126094 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C18%2C24%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 126475 126475 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold753 SAMTools SNP 126529 126529 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 126673 126673 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold753 SAMTools SNP 127152 127152 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold753 SAMTools SNP 131096 131096 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold753 SAMTools SNP 131372 131372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold753 SAMTools SNP 133666 133666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.11%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 133679 133679 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C9%2C8%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.32%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold753 SAMTools SNP 134035 134035 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C42%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold753 SAMTools SNP 134059 134059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold753 SAMTools SNP 134532 134532 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold753 SAMTools SNP 134538 134538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold753 SAMTools SNP 134878 134878 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold753 SAMTools SNP 134926 134926 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold753 SAMTools SNP 135307 135307 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C232:99 scaffold753 SAMTools SNP 135596 135596 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold753 SAMTools SNP 136185 136185 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold753 SAMTools SNP 137470 137470 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.3%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C187:99 scaffold753 SAMTools SNP 137956 137956 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold753 SAMTools SNP 137977 137977 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold753 SAMTools SNP 138397 138397 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold753 SAMTools SNP 138564 138564 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold753 SAMTools SNP 138636 138636 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 138822 138822 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold753 SAMTools SNP 139020 139020 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold753 SAMTools SNP 139364 139364 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 140259 140259 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold753 SAMTools SNP 140283 140283 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold753 SAMTools SNP 140324 140324 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C98:30 scaffold753 SAMTools SNP 140436 140436 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.015%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C215:99 scaffold753 SAMTools SNP 141061 141061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold753 SAMTools SNP 141758 141758 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 142182 142182 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C26%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 142448 142448 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C25%2C3%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 142495 142495 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.099%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 142521 142521 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.53%2C0.46%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold753 SAMTools SNP 142563 142563 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C226:59 scaffold753 SAMTools SNP 145029 145029 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C7%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.22%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold753 SAMTools SNP 145491 145491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold753 SAMTools SNP 146631 146631 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold753 SAMTools SNP 150004 150004 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 150320 150320 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold753 SAMTools SNP 150375 150375 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C33%2C0%2C11%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.025%2C1.6e-14%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold753 SAMTools SNP 160240 160240 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold753 SAMTools SNP 165532 165532 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C10%2C5%2C22%3BMQ%3D49%3BFQ%3D225%3BPV4%3D7.5e-10%2C0.00079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 165536 165536 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C61%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D5.9e-10%2C1%2C0.11%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 165976 165976 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C38%2C3%3BMQ%3D49%3BFQ%3D225%3BPV4%3D5.4e-07%2C0.24%2C0.046%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 166060 166060 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C73%2C10%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 166531 166531 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C65%2C2%2C8%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold753 SAMTools SNP 166553 166553 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C68%2C22%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C6.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 167278 167278 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold753 SAMTools SNP 167546 167546 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C23%2C81%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C2.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 167564 167564 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C1%2C37%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00061%2C0.46%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 168106 168106 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C14%2C55%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C8.7e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 168154 168154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D279%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C108%2C38%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 168455 168455 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold753 SAMTools SNP 169061 169061 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 169182 169182 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold753 SAMTools SNP 169267 169267 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.22%2C2.6e-15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C201:72 scaffold753 SAMTools SNP 172371 172371 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C6.5e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C88:91 scaffold753 SAMTools SNP 172466 172466 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C48%2C0:93 scaffold753 SAMTools SNP 172543 172543 29.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold753 SAMTools SNP 176397 176397 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.17%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C132:99 scaffold753 SAMTools SNP 177049 177049 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold753 SAMTools SNP 177079 177079 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C154:41 scaffold753 SAMTools SNP 178851 178851 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.017%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C218:39 scaffold753 SAMTools SNP 179230 179230 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold753 SAMTools SNP 179236 179236 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold753 SAMTools SNP 179278 179278 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold753 SAMTools SNP 180332 180332 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold753 SAMTools SNP 184673 184673 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 184918 184918 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold753 SAMTools SNP 184921 184921 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold753 SAMTools SNP 184938 184938 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold753 SAMTools SNP 184954 184954 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 185264 185264 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 185926 185926 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 188866 188866 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C69%2C0:99 scaffold753 SAMTools SNP 189070 189070 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C191:99 scaffold753 SAMTools SNP 189236 189236 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold753 SAMTools SNP 216314 216314 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C15%2C0:27 scaffold753 SAMTools SNP 216978 216978 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 223537 223537 43.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold753 SAMTools SNP 233641 233641 55.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C6%2C0:10 scaffold753 SAMTools SNP 254429 254429 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold753 SAMTools SNP 260192 260192 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C30%2C35%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.49%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 260222 260222 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C30%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00018%2C3.4e-06%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 261781 261781 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C114%2C31%2C9%3BMQ%3D50%3BFQ%3D148%3BPV4%3D6.7e-11%2C5.8e-11%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold753 SAMTools SNP 263813 263813 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D755%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C219%2C149%2C240%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 271966 271966 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold753 SAMTools SNP 272815 272815 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C255%2C0:99 scaffold753 SAMTools SNP 272909 272909 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C31%2C0%2C30%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.008%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold753 SAMTools SNP 272923 272923 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C65%3BMQ%3D50%3BFQ%3D-190%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold753 SAMTools SNP 277791 277791 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C10%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.54%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold753 SAMTools SNP 285598 285598 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 300376 300376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold753 SAMTools SNP 300415 300415 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold753 SAMTools SNP 301374 301374 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C7%2C10%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.68%2C1.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold753 SAMTools SNP 301956 301956 13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold753 SAMTools SNP 302341 302341 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold753 SAMTools SNP 305224 305224 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold753 SAMTools SNP 305254 305254 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold753 SAMTools SNP 305288 305288 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold753 SAMTools SNP 305791 305791 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold753 SAMTools SNP 305892 305892 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.58%2C5.4e-14%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C251:42 scaffold753 SAMTools SNP 306351 306351 140 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C9%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C189:99 scaffold753 SAMTools SNP 306405 306405 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.13%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold753 SAMTools SNP 318222 318222 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 318231 318231 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold753 SAMTools SNP 319275 319275 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0306%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold753 SAMTools SNP 319876 319876 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.49%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold753 SAMTools SNP 319915 319915 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.071%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold753 SAMTools SNP 320237 320237 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold753 SAMTools SNP 320779 320779 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold753 SAMTools SNP 320782 320782 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold753 SAMTools SNP 320797 320797 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C101:99 scaffold753 SAMTools SNP 321062 321062 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold753 SAMTools SNP 322151 322151 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 322211 322211 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C5%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.0057%2C0.23%2C1%2C8.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold753 SAMTools SNP 322256 322256 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C227:99 scaffold753 SAMTools SNP 322268 322268 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold753 SAMTools SNP 324195 324195 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold753 SAMTools SNP 325434 325434 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold753 SAMTools SNP 325726 325726 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 326178 326178 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C7%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold753 SAMTools SNP 326805 326805 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold753 SAMTools SNP 326823 326823 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C9%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C4.6e-53%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 326841 326841 72 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C136:99 scaffold753 SAMTools SNP 327268 327268 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.003%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold753 SAMTools SNP 327301 327301 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0039%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold753 SAMTools SNP 327340 327340 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold753 SAMTools SNP 327716 327716 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 327719 327719 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 328088 328088 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold753 SAMTools SNP 328091 328091 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold753 SAMTools SNP 328568 328568 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0019%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold753 SAMTools SNP 328583 328583 29 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold753 SAMTools SNP 328613 328613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.005%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C187:99 scaffold753 SAMTools SNP 328911 328911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C20%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold753 SAMTools SNP 328920 328920 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 328974 328974 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C10%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.25%2C2.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold753 SAMTools SNP 329103 329103 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold753 SAMTools SNP 329444 329444 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold753 SAMTools SNP 331962 331962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold753 SAMTools SNP 331972 331972 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold753 SAMTools SNP 338749 338749 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 339152 339152 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 339213 339213 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 340528 340528 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold753 SAMTools SNP 340938 340938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C10%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold753 SAMTools SNP 342669 342669 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold753 SAMTools SNP 342673 342673 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold753 SAMTools SNP 342679 342679 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold753 SAMTools SNP 343803 343803 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D40%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold753 SAMTools SNP 344144 344144 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold753 SAMTools SNP 344449 344449 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D43%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold753 SAMTools SNP 353404 353404 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.052%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold753 SAMTools SNP 363038 363038 215 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold753 SAMTools SNP 363153 363153 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold753 SAMTools SNP 363630 363630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C37%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 365816 365816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold753 SAMTools SNP 365834 365834 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C41%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 365876 365876 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C0%2C30%3BMQ%3D50%3BFQ%3D216%3BPV4%3D3e-06%2C0.28%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold753 SAMTools SNP 366114 366114 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C0%2C30%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold753 SAMTools SNP 368226 368226 14.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D13%3BFQ%3D-35%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C8%2C0:13 scaffold753 SAMTools SNP 368247 368247 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D20%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C0:4 scaffold753 SAMTools SNP 368618 368618 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C18%3BMQ%3D21%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C66%2C0:96 scaffold753 SAMTools SNP 370496 370496 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 370535 370535 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C27%2C3%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold753 SAMTools SNP 372640 372640 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C58%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold753 SAMTools SNP 372652 372652 185 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C20%2C6%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.27%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold753 SAMTools SNP 372709 372709 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C6%3BMQ%3D45%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C169:99 scaffold754 SAMTools SNP 17759 17759 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C24%2C0:45 scaffold754 SAMTools SNP 17851 17851 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold754 SAMTools SNP 18905 18905 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold754 SAMTools SNP 18914 18914 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.28%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C63:66 scaffold754 SAMTools SNP 18959 18959 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold754 SAMTools SNP 19127 19127 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold754 SAMTools SNP 20337 20337 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.2%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold754 SAMTools SNP 20373 20373 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold754 SAMTools SNP 20378 20378 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C2.1e-05%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C230:39 scaffold754 SAMTools SNP 42379 42379 212 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C33%2C0:63 scaffold754 SAMTools SNP 42394 42394 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold754 SAMTools SNP 42571 42571 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold754 SAMTools SNP 43257 43257 9.49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold754 SAMTools SNP 44300 44300 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold754 SAMTools SNP 49041 49041 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold754 SAMTools SNP 49098 49098 29 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold754 SAMTools SNP 49900 49900 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold754 SAMTools SNP 51180 51180 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 54361 54361 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold754 SAMTools SNP 57021 57021 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold754 SAMTools SNP 57062 57062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold754 SAMTools SNP 80868 80868 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D45%3BFQ%3D5.42%3BPV4%3D0.4%2C0.0027%2C0.34%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C31:34 scaffold754 SAMTools SNP 80982 80982 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold754 SAMTools SNP 82310 82310 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold754 SAMTools SNP 91472 91472 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.62%2C0.0044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C248:76 scaffold754 SAMTools SNP 126848 126848 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 127927 127927 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 127977 127977 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 145814 145814 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold754 SAMTools SNP 146621 146621 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold754 SAMTools SNP 146638 146638 137 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.12%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold754 SAMTools SNP 146690 146690 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C57%2C0:99 scaffold754 SAMTools SNP 146775 146775 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.029%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold754 SAMTools SNP 146796 146796 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold754 SAMTools SNP 148346 148346 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold754 SAMTools SNP 148389 148389 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D32%2C2%2C22%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.51%2C5.9e-48%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold754 SAMTools SNP 148440 148440 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold754 SAMTools SNP 148463 148463 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold754 SAMTools SNP 150231 150231 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold754 SAMTools SNP 150950 150950 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C54%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold754 SAMTools SNP 151002 151002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C54%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold754 SAMTools SNP 151340 151340 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold754 SAMTools SNP 154013 154013 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold754 SAMTools SNP 154508 154508 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.47%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold754 SAMTools SNP 155112 155112 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold754 SAMTools SNP 155630 155630 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.019%2C5.3e-05%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold754 SAMTools SNP 160908 160908 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C39%2C0:74 scaffold754 SAMTools SNP 161348 161348 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold754 SAMTools SNP 161357 161357 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold754 SAMTools SNP 162164 162164 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold754 SAMTools SNP 163537 163537 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold754 SAMTools SNP 166692 166692 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C36%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C132%2C0:99 scaffold754 SAMTools SNP 166827 166827 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C7%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C199%2C0:99 scaffold754 SAMTools SNP 166947 166947 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C10%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.29%2C3.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C138:61 scaffold754 SAMTools SNP 167130 167130 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C13%2C64%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.49%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 167151 167151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C14%2C64%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0046%2C0.0026%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 170215 170215 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C65%2C0%2C120%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold754 SAMTools SNP 183772 183772 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold754 SAMTools SNP 183790 183790 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold754 SAMTools SNP 183814 183814 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold754 SAMTools SNP 184633 184633 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C21%2C0:39 scaffold754 SAMTools SNP 184654 184654 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C22%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.28%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C218:99 scaffold754 SAMTools SNP 184681 184681 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C1%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 184854 184854 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C47%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold754 SAMTools SNP 184911 184911 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.29%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C160:99 scaffold754 SAMTools SNP 185841 185841 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold754 SAMTools SNP 185847 185847 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 186340 186340 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold754 SAMTools SNP 186376 186376 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold754 SAMTools SNP 187418 187418 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C9%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.042%2C0.033%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold754 SAMTools SNP 187440 187440 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.22%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold754 SAMTools SNP 201178 201178 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold754 SAMTools SNP 202715 202715 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C91:94 scaffold754 SAMTools SNP 203551 203551 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold754 SAMTools SNP 203566 203566 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold754 SAMTools SNP 204268 204268 49 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C5%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D3.5e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold754 SAMTools SNP 204282 204282 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C43%3BMQ%3D50%3BFQ%3D89%3BPV4%3D2.7e-06%2C0.21%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold754 SAMTools SNP 206321 206321 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold754 SAMTools SNP 206380 206380 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold754 SAMTools SNP 206485 206485 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold754 SAMTools SNP 206489 206489 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C6%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold754 SAMTools SNP 207000 207000 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold754 SAMTools SNP 249497 249497 10.9 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold754 SAMTools SNP 270453 270453 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold754 SAMTools SNP 270733 270733 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.051%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 270745 270745 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C60%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold754 SAMTools SNP 270752 270752 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C0%2C18%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.11%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold754 SAMTools SNP 275803 275803 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 278395 278395 36.5 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C26%2C14%2C64%2C0%2C61:21 scaffold754 SAMTools SNP 278792 278792 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C22%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C172%2C0:99 scaffold754 SAMTools SNP 279035 279035 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C7%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0001%2C2.3e-05%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C209:74 scaffold754 SAMTools SNP 279057 279057 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C51%2C0:99 scaffold754 SAMTools SNP 279225 279225 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold754 SAMTools SNP 279233 279233 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold754 SAMTools SNP 289380 289380 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C1%2C16%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1.9e-21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold754 SAMTools SNP 292311 292311 28.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold754 SAMTools SNP 294999 294999 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold754 SAMTools SNP 299096 299096 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C202:99 scaffold754 SAMTools SNP 299414 299414 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C30%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 301998 301998 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C88%2C3%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 302031 302031 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C139%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold754 SAMTools SNP 302562 302562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 303007 303007 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C29%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold754 SAMTools SNP 303251 303251 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold754 SAMTools SNP 303359 303359 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold754 SAMTools SNP 303755 303755 78 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D70.6%3BPV4%3D0.53%2C9.4e-20%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C98:99 scaffold754 SAMTools SNP 304290 304290 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold754 SAMTools SNP 304362 304362 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C3.8e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C132:34 scaffold754 SAMTools SNP 310413 310413 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C87%2C0:99 scaffold754 SAMTools SNP 311753 311753 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.052%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold754 SAMTools SNP 311757 311757 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C14%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.02%2C2.8e-12%2C1%2C2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold754 SAMTools SNP 311776 311776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold754 SAMTools SNP 311797 311797 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C160:99 scaffold754 SAMTools SNP 311893 311893 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold754 SAMTools SNP 311908 311908 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold754 SAMTools SNP 313059 313059 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 313356 313356 67 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold754 SAMTools SNP 313429 313429 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold754 SAMTools SNP 314259 314259 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold754 SAMTools SNP 314316 314316 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D31%2C0%2C170%2C0%3BMQ%3D50%3BFQ%3D-44%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C17%2C0:31 scaffold754 SAMTools SNP 320680 320680 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C35%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.024%2C8.1e-35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C161:34 scaffold754 SAMTools SNP 321045 321045 11.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold754 SAMTools SNP 321282 321282 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C9%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.49%2C5.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold754 SAMTools SNP 325797 325797 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.55%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C207:64 scaffold754 SAMTools SNP 325875 325875 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.012%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold754 SAMTools SNP 328093 328093 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold754 SAMTools SNP 340135 340135 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C130:99 scaffold754 SAMTools SNP 340588 340588 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.37%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold754 SAMTools SNP 340606 340606 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C245:99 scaffold754 SAMTools SNP 340823 340823 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold754 SAMTools SNP 341467 341467 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold754 SAMTools SNP 341480 341480 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold754 SAMTools SNP 343295 343295 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold754 SAMTools SNP 344743 344743 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold754 SAMTools SNP 344765 344765 183 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold754 SAMTools SNP 344801 344801 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold754 SAMTools SNP 347092 347092 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold754 SAMTools SNP 347144 347144 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold754 SAMTools SNP 347149 347149 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold754 SAMTools SNP 348795 348795 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold754 SAMTools SNP 349327 349327 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C107:99 scaffold754 SAMTools SNP 349987 349987 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold754 SAMTools SNP 350609 350609 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold754 SAMTools SNP 365601 365601 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold754 SAMTools SNP 376020 376020 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 376668 376668 95 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C45%2C0:87 scaffold754 SAMTools SNP 377269 377269 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C7%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 377371 377371 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C2%2C31%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.3%2C8.8e-38%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold754 SAMTools SNP 377809 377809 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C32:35 scaffold754 SAMTools SNP 379492 379492 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold754 SAMTools SNP 379522 379522 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold754 SAMTools SNP 380372 380372 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.37%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold754 SAMTools SNP 380387 380387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 380680 380680 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold754 SAMTools SNP 380889 380889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C31%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.12%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold754 SAMTools SNP 382140 382140 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 382519 382519 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 385886 385886 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold754 SAMTools SNP 385961 385961 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold756 SAMTools SNP 2833 2833 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold756 SAMTools SNP 2845 2845 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C36%2C0:69 scaffold756 SAMTools SNP 2929 2929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold756 SAMTools SNP 3194 3194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold756 SAMTools SNP 3266 3266 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 3314 3314 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold756 SAMTools SNP 3880 3880 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold756 SAMTools SNP 3888 3888 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold756 SAMTools SNP 4069 4069 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold756 SAMTools SNP 4141 4141 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold756 SAMTools SNP 4495 4495 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold756 SAMTools SNP 4620 4620 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 4629 4629 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 6679 6679 19.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.001%2C0.0001%2C1%2C5.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold756 SAMTools SNP 7599 7599 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold756 SAMTools SNP 7683 7683 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 7728 7728 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C25%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 9732 9732 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 9876 9876 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C4%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold756 SAMTools SNP 9918 9918 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold756 SAMTools SNP 13897 13897 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 13900 13900 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold756 SAMTools SNP 13969 13969 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C17%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.11%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C246:99 scaffold756 SAMTools SNP 15743 15743 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.11%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold756 SAMTools SNP 15753 15753 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C174:99 scaffold756 SAMTools SNP 15769 15769 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C222:99 scaffold756 SAMTools SNP 16010 16010 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold756 SAMTools SNP 16043 16043 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold756 SAMTools SNP 18967 18967 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold756 SAMTools SNP 22466 22466 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold756 SAMTools SNP 22491 22491 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold756 SAMTools SNP 25142 25142 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.035%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold756 SAMTools SNP 25187 25187 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold756 SAMTools SNP 25479 25479 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold756 SAMTools SNP 30820 30820 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C32%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C111%2C0:99 scaffold756 SAMTools SNP 31158 31158 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold756 SAMTools SNP 33824 33824 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold756 SAMTools SNP 36377 36377 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold756 SAMTools SNP 37580 37580 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold756 SAMTools SNP 37672 37672 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold756 SAMTools SNP 37916 37916 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold756 SAMTools SNP 37988 37988 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.16%2C2.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold756 SAMTools SNP 38030 38030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C26%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.029%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold756 SAMTools SNP 38070 38070 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C2%2C87%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-05%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 38336 38336 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C21%2C83%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 38498 38498 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C5%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.094%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold756 SAMTools SNP 39672 39672 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 39708 39708 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C2%2C8%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.073%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold756 SAMTools SNP 42640 42640 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold756 SAMTools SNP 42820 42820 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold756 SAMTools SNP 42826 42826 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold756 SAMTools SNP 46073 46073 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold756 SAMTools SNP 46135 46135 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 52779 52779 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D972%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D330%2C204%2C230%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 52938 52938 82.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0447%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C8:11 scaffold756 SAMTools SNP 53961 53961 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 53980 53980 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 56201 56201 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold756 SAMTools SNP 56466 56466 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold756 SAMTools SNP 59985 59985 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.11%2C2e-12%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold756 SAMTools SNP 60764 60764 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold756 SAMTools SNP 60815 60815 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 65089 65089 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold756 SAMTools SNP 65092 65092 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold756 SAMTools SNP 65865 65865 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold756 SAMTools SNP 66248 66248 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.26%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold756 SAMTools SNP 66314 66314 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold756 SAMTools SNP 66678 66678 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C216:94 scaffold756 SAMTools SNP 67101 67101 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold756 SAMTools SNP 67478 67478 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold756 SAMTools SNP 67505 67505 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0192%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C158:36 scaffold756 SAMTools SNP 67541 67541 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold756 SAMTools SNP 67574 67574 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold756 SAMTools SNP 68133 68133 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold756 SAMTools SNP 68666 68666 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold756 SAMTools SNP 69870 69870 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold756 SAMTools SNP 71038 71038 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 71074 71074 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 71575 71575 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold756 SAMTools SNP 71736 71736 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold756 SAMTools SNP 71778 71778 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 71793 71793 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.18%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 71820 71820 49.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold756 SAMTools SNP 71850 71850 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 72340 72340 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold756 SAMTools SNP 72702 72702 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold756 SAMTools SNP 72714 72714 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.31%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold756 SAMTools SNP 73220 73220 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 73235 73235 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 73250 73250 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 73397 73397 17.1 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C40%2C37%2C47%2C0%2C44:6 scaffold756 SAMTools SNP 73451 73451 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0029%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold756 SAMTools SNP 73468 73468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold756 SAMTools SNP 75145 75145 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0133%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold756 SAMTools SNP 75538 75538 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold756 SAMTools SNP 75582 75582 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold756 SAMTools SNP 75616 75616 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold756 SAMTools SNP 75932 75932 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold756 SAMTools SNP 76638 76638 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold756 SAMTools SNP 76662 76662 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold756 SAMTools SNP 76727 76727 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 77726 77726 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 77747 77747 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 78354 78354 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold756 SAMTools SNP 78553 78553 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold756 SAMTools SNP 78991 78991 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 84992 84992 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 86189 86189 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold756 SAMTools SNP 86689 86689 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C21%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold756 SAMTools SNP 87804 87804 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold756 SAMTools SNP 87987 87987 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C28%2C3%2C15%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00011%2C7.7e-06%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold756 SAMTools SNP 92093 92093 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold756 SAMTools SNP 94993 94993 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C47%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold756 SAMTools SNP 95110 95110 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold756 SAMTools SNP 95146 95146 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold756 SAMTools SNP 95615 95615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D471%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C324%2C6%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold756 SAMTools SNP 177245 177245 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold756 SAMTools SNP 186098 186098 16.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold756 SAMTools SNP 227834 227834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold756 SAMTools SNP 227942 227942 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold756 SAMTools SNP 228060 228060 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold756 SAMTools SNP 228079 228079 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 282453 282453 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold756 SAMTools SNP 283170 283170 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold756 SAMTools SNP 283179 283179 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold756 SAMTools SNP 283297 283297 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 285386 285386 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 288450 288450 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold756 SAMTools SNP 290798 290798 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold756 SAMTools SNP 328868 328868 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold756 SAMTools SNP 328885 328885 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold756 SAMTools SNP 362334 362334 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 363773 363773 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold756 SAMTools SNP 363878 363878 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C7%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold756 SAMTools SNP 364355 364355 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C30%2C12%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C87:90 scaffold756 SAMTools SNP 364438 364438 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C7%2C29%3BMQ%3D49%3BFQ%3D-48%3BPV4%3D0.051%2C1%2C0.37%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold756 SAMTools SNP 364568 364568 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C36%3BMQ%3D48%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold756 SAMTools SNP 364594 364594 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C1%2C1%3BMQ%3D47%3BFQ%3D16.1%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold756 SAMTools SNP 364646 364646 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C4%3BMQ%3D47%3BFQ%3D80%3BPV4%3D0.43%2C1%2C0.18%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C160:99 scaffold756 SAMTools SNP 365274 365274 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.43%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C198:99 scaffold756 SAMTools SNP 365286 365286 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold756 SAMTools SNP 365289 365289 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold756 SAMTools SNP 365295 365295 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C0.01%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold756 SAMTools SNP 365490 365490 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.2%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold756 SAMTools SNP 365501 365501 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C0.34%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold756 SAMTools SNP 365537 365537 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold756 SAMTools SNP 365794 365794 214 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold756 SAMTools SNP 365831 365831 30.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold756 SAMTools SNP 365885 365885 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 377548 377548 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold756 SAMTools SNP 377570 377570 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold756 SAMTools SNP 378418 378418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold756 SAMTools SNP 379252 379252 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold756 SAMTools SNP 430949 430949 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold756 SAMTools SNP 431869 431869 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold756 SAMTools SNP 432012 432012 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D45%3BFQ%3D56.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C88:86 scaffold756 SAMTools SNP 461035 461035 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 4755 4755 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 4789 4789 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 4839 4839 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 4864 4864 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 32661 32661 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold759 SAMTools SNP 34600 34600 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 34984 34984 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold759 SAMTools SNP 35035 35035 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold759 SAMTools SNP 36663 36663 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold759 SAMTools SNP 36762 36762 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C12:15 scaffold759 SAMTools SNP 37279 37279 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold759 SAMTools SNP 45826 45826 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold759 SAMTools SNP 47692 47692 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold759 SAMTools SNP 53167 53167 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold759 SAMTools SNP 53212 53212 33.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold759 SAMTools SNP 54005 54005 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold759 SAMTools SNP 55051 55051 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold759 SAMTools SNP 55682 55682 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C39%2C0:75 scaffold759 SAMTools SNP 55943 55943 64.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C0:39 scaffold759 SAMTools SNP 55990 55990 6.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold759 SAMTools SNP 64357 64357 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold759 SAMTools SNP 87380 87380 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold759 SAMTools SNP 95571 95571 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold759 SAMTools SNP 103279 103279 17.6 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold759 SAMTools SNP 104905 104905 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold759 SAMTools SNP 149354 149354 4.11 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold759 SAMTools SNP 155442 155442 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold759 SAMTools SNP 157004 157004 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C0%3BMQ%3D47%3BFQ%3D-3.01%3BPV4%3D0.2%2C3.6e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C27:30 scaffold759 SAMTools SNP 157652 157652 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D47.2%3BPV4%3D1%2C0.0062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C82:77 scaffold759 SAMTools SNP 196632 196632 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold759 SAMTools SNP 197346 197346 47.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold759 SAMTools SNP 197430 197430 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00016%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C107:60 scaffold759 SAMTools SNP 197520 197520 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold759 SAMTools SNP 202145 202145 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold759 SAMTools SNP 202161 202161 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold759 SAMTools SNP 202223 202223 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C151:99 scaffold759 SAMTools SNP 203284 203284 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold759 SAMTools SNP 203401 203401 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.29%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold759 SAMTools SNP 203407 203407 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.64%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold759 SAMTools SNP 203960 203960 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.59%2C0.14%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C227:99 scaffold759 SAMTools SNP 204006 204006 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C209:99 scaffold759 SAMTools SNP 206156 206156 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C11%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.11%2C0.0018%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold759 SAMTools SNP 206351 206351 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold759 SAMTools SNP 207551 207551 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C59%2C0%2C14%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.58%2C1%2C1%2C1.2e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold759 SAMTools SNP 207612 207612 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold759 SAMTools SNP 209575 209575 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold759 SAMTools SNP 210405 210405 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D65.7%3BPV4%3D0.012%2C0.043%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C93:96 scaffold759 SAMTools SNP 210443 210443 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold759 SAMTools SNP 210797 210797 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold759 SAMTools SNP 211155 211155 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold759 SAMTools SNP 211823 211823 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.22%2C0.25%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C73:76 scaffold759 SAMTools SNP 211951 211951 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold759 SAMTools SNP 212176 212176 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold759 SAMTools SNP 212188 212188 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold759 SAMTools SNP 213292 213292 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold759 SAMTools SNP 213409 213409 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 213421 213421 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold759 SAMTools SNP 213948 213948 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold759 SAMTools SNP 214565 214565 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C135:36 scaffold759 SAMTools SNP 214755 214755 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C160:85 scaffold759 SAMTools SNP 215319 215319 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold759 SAMTools SNP 215320 215320 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold759 SAMTools SNP 215703 215703 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold759 SAMTools SNP 215731 215731 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C5%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.57%2C0.19%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold759 SAMTools SNP 216822 216822 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold759 SAMTools SNP 217371 217371 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold759 SAMTools SNP 217413 217413 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold759 SAMTools SNP 218272 218272 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C53%2C1%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.42%2C0.0014%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold759 SAMTools SNP 218810 218810 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C17%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.044%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold759 SAMTools SNP 220757 220757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold759 SAMTools SNP 221038 221038 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold759 SAMTools SNP 221069 221069 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold759 SAMTools SNP 221284 221284 22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.00011%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C138:55 scaffold759 SAMTools SNP 221380 221380 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C8.3e-12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold759 SAMTools SNP 226047 226047 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold759 SAMTools SNP 226646 226646 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold759 SAMTools SNP 228123 228123 102 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.29%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold759 SAMTools SNP 229084 229084 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold759 SAMTools SNP 231244 231244 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold759 SAMTools SNP 249228 249228 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold759 SAMTools SNP 249765 249765 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold76 SAMTools SNP 11348 11348 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold76 SAMTools SNP 11369 11369 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold76 SAMTools SNP 18527 18527 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 36578 36578 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C42%2C0:80 scaffold76 SAMTools SNP 37436 37436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 44003 44003 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold76 SAMTools SNP 46512 46512 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold76 SAMTools SNP 46516 46516 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.17%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold76 SAMTools SNP 46555 46555 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C13%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.079%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 48417 48417 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 48647 48647 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C215:99 scaffold76 SAMTools SNP 60421 60421 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C11%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C72%2C0:99 scaffold76 SAMTools SNP 103203 103203 8.66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.83%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C20:24 scaffold76 SAMTools SNP 103290 103290 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C48%2C4%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D0.094%2C5.6e-28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C110%2C0:99 scaffold76 SAMTools SNP 103353 103353 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C95:40 scaffold76 SAMTools SNP 103368 103368 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D451%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.071%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C66:69 scaffold76 SAMTools SNP 103421 103421 172 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C63:66 scaffold76 SAMTools SNP 103490 103490 66.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D810%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C21%2C0:39 scaffold76 SAMTools SNP 115220 115220 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.015%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold76 SAMTools SNP 118430 118430 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold76 SAMTools SNP 118857 118857 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold76 SAMTools SNP 118869 118869 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 118881 118881 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold76 SAMTools SNP 119107 119107 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold76 SAMTools SNP 135194 135194 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold76 SAMTools SNP 135221 135221 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold76 SAMTools SNP 135254 135254 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C10%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.27%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold76 SAMTools SNP 135290 135290 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C5%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold76 SAMTools SNP 137506 137506 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C5%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.15%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold76 SAMTools SNP 141143 141143 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 141937 141937 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold76 SAMTools SNP 142294 142294 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold76 SAMTools SNP 142360 142360 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.24%2C1%2C5.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 142631 142631 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C18%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 142670 142670 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 143208 143208 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C8%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 144917 144917 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.06%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold76 SAMTools SNP 146115 146115 207 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C8%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold76 SAMTools SNP 146121 146121 213 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C36%2C8%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold76 SAMTools SNP 147666 147666 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 147684 147684 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 149206 149206 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.048%2C0.071%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold76 SAMTools SNP 149210 149210 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C0%2C11%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.048%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold76 SAMTools SNP 149318 149318 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold76 SAMTools SNP 149360 149360 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C0%2C16%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold76 SAMTools SNP 150669 150669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold76 SAMTools SNP 150698 150698 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 150710 150710 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold76 SAMTools SNP 151724 151724 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 152632 152632 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold76 SAMTools SNP 152656 152656 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C213:57 scaffold76 SAMTools SNP 152683 152683 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold76 SAMTools SNP 153995 153995 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C6%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold76 SAMTools SNP 154258 154258 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold76 SAMTools SNP 154264 154264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 157281 157281 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C3%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold76 SAMTools SNP 157296 157296 154 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C4%2C24%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.57%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold76 SAMTools SNP 161720 161720 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold76 SAMTools SNP 161741 161741 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold76 SAMTools SNP 162036 162036 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold76 SAMTools SNP 162347 162347 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 163481 163481 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold76 SAMTools SNP 163517 163517 78.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C21%2C0:39 scaffold76 SAMTools SNP 163682 163682 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 163826 163826 32.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold76 SAMTools SNP 163877 163877 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C84%2C0:99 scaffold76 SAMTools SNP 164116 164116 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C56%2C66%2C36%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.012%2C3.4e-146%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold76 SAMTools SNP 164608 164608 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C45%2C23%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C2.2e-26%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 164656 164656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C13%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold76 SAMTools SNP 165745 165745 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C320%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold76 SAMTools SNP 168723 168723 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold76 SAMTools SNP 170963 170963 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 171285 171285 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold76 SAMTools SNP 172723 172723 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold76 SAMTools SNP 173673 173673 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold76 SAMTools SNP 174160 174160 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C5%2C12%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.2%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold76 SAMTools SNP 174340 174340 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C13%3BMQ%3D48%3BFQ%3D202%3BPV4%3D0.47%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold76 SAMTools SNP 174376 174376 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D43%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C134:79 scaffold76 SAMTools SNP 174692 174692 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold76 SAMTools SNP 174997 174997 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold76 SAMTools SNP 175042 175042 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold76 SAMTools SNP 175765 175765 32 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.011%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold76 SAMTools SNP 176323 176323 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold76 SAMTools SNP 176356 176356 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold76 SAMTools SNP 176942 176942 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold76 SAMTools SNP 177981 177981 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C4.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C238:99 scaffold76 SAMTools SNP 186285 186285 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold76 SAMTools SNP 186454 186454 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold76 SAMTools SNP 190050 190050 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold76 SAMTools SNP 190107 190107 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold76 SAMTools SNP 190575 190575 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold76 SAMTools SNP 191088 191088 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold76 SAMTools SNP 191410 191410 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 192935 192935 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 195103 195103 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C129:99 scaffold76 SAMTools SNP 197339 197339 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold76 SAMTools SNP 198191 198191 86.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold76 SAMTools SNP 198532 198532 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold76 SAMTools SNP 198574 198574 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 198580 198580 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 198998 198998 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 204615 204615 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 204627 204627 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold76 SAMTools SNP 212497 212497 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold76 SAMTools SNP 212629 212629 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold76 SAMTools SNP 212638 212638 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold76 SAMTools SNP 213075 213075 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C36%2C16%3BMQ%3D50%3BFQ%3D-137%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C110%2C0:99 scaffold76 SAMTools SNP 213376 213376 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C53%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold76 SAMTools SNP 213573 213573 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold76 SAMTools SNP 213850 213850 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 214025 214025 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.21%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold76 SAMTools SNP 214432 214432 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold76 SAMTools SNP 214462 214462 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C148:77 scaffold76 SAMTools SNP 214502 214502 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold76 SAMTools SNP 214508 214508 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold76 SAMTools SNP 214549 214549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.38%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold76 SAMTools SNP 215698 215698 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.069%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold76 SAMTools SNP 216093 216093 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold76 SAMTools SNP 216538 216538 94.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C12%2C0:21 scaffold76 SAMTools SNP 216586 216586 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C54%2C0:99 scaffold76 SAMTools SNP 216755 216755 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold76 SAMTools SNP 216943 216943 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.37%2C8.2e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C228:33 scaffold76 SAMTools SNP 218074 218074 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold76 SAMTools SNP 218089 218089 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold76 SAMTools SNP 218277 218277 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C30%2C0:57 scaffold76 SAMTools SNP 218298 218298 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C4:69 scaffold76 SAMTools SNP 218495 218495 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold76 SAMTools SNP 219991 219991 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C107:37 scaffold76 SAMTools SNP 221418 221418 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 5770 5770 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold760 SAMTools SNP 5798 5798 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 53168 53168 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C1%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold760 SAMTools SNP 53198 53198 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold760 SAMTools SNP 53940 53940 26.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold760 SAMTools SNP 58372 58372 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 76143 76143 8.44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold760 SAMTools SNP 79965 79965 66.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C15%2C0:27 scaffold760 SAMTools SNP 80109 80109 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold760 SAMTools SNP 87027 87027 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 87434 87434 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold760 SAMTools SNP 88533 88533 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 88566 88566 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold760 SAMTools SNP 93110 93110 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold760 SAMTools SNP 93160 93160 6.59 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold760 SAMTools SNP 95180 95180 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold760 SAMTools SNP 95192 95192 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.48%2C4.2e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C229:99 scaffold760 SAMTools SNP 95283 95283 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold760 SAMTools SNP 97983 97983 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold760 SAMTools SNP 101124 101124 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.52%2C0.00024%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold760 SAMTools SNP 116666 116666 3.54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D38%3BFQ%3D5.02%3BPV4%3D1%2C5.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C39:30 scaffold760 SAMTools SNP 117830 117830 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 117833 117833 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 118046 118046 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold760 SAMTools SNP 138268 138268 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D20%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C54%2C0:99 scaffold760 SAMTools SNP 138535 138535 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D35%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C36%2C0:69 scaffold760 SAMTools SNP 138589 138589 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C29:32 scaffold760 SAMTools SNP 153286 153286 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 155512 155512 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D47%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C222:66 scaffold760 SAMTools SNP 156376 156376 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold760 SAMTools SNP 156409 156409 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C6%3BMQ%3D48%3BFQ%3D120%3BPV4%3D0.49%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C147:99 scaffold760 SAMTools SNP 156416 156416 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C12%2C2%2C0%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D0.12%2C0.42%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold760 SAMTools SNP 156460 156460 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold760 SAMTools SNP 156595 156595 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold760 SAMTools SNP 156639 156639 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C19%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 157679 157679 127 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold760 SAMTools SNP 157867 157867 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold760 SAMTools SNP 157875 157875 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold760 SAMTools SNP 157942 157942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold760 SAMTools SNP 158320 158320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold760 SAMTools SNP 158597 158597 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.25%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold760 SAMTools SNP 158611 158611 113 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C51%2C0:99 scaffold760 SAMTools SNP 158625 158625 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0012%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold760 SAMTools SNP 158633 158633 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold760 SAMTools SNP 158786 158786 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C8%2C11%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.2%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold760 SAMTools SNP 159026 159026 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C9%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.17%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold760 SAMTools SNP 159061 159061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold760 SAMTools SNP 167098 167098 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C17%2C9%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0051%2C1.2e-05%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold760 SAMTools SNP 167705 167705 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.27%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold760 SAMTools SNP 167712 167712 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C14%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C0.19%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold760 SAMTools SNP 167737 167737 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0099%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold760 SAMTools SNP 168291 168291 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C31%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.0016%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C86:89 scaffold760 SAMTools SNP 168298 168298 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C7%2C35%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C0.00082%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold760 SAMTools SNP 169379 169379 137 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C10%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.11%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold760 SAMTools SNP 169390 169390 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C18%2C0:33 scaffold760 SAMTools SNP 169480 169480 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C11%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 170404 170404 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 170451 170451 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C30%2C0:57 scaffold760 SAMTools SNP 171894 171894 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C2%2C9%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold760 SAMTools SNP 171981 171981 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D261%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C37%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 175590 175590 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 175647 175647 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 176461 176461 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold760 SAMTools SNP 178178 178178 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 178231 178231 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold760 SAMTools SNP 178415 178415 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold760 SAMTools SNP 178442 178442 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold760 SAMTools SNP 178483 178483 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 178793 178793 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 180036 180036 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 180071 180071 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 186307 186307 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold760 SAMTools SNP 212187 212187 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold760 SAMTools SNP 217124 217124 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold760 SAMTools SNP 219874 219874 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C232:36 scaffold760 SAMTools SNP 219982 219982 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1.1e-09%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C220:50 scaffold760 SAMTools SNP 252468 252468 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold760 SAMTools SNP 253648 253648 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.41%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C216:62 scaffold760 SAMTools SNP 253683 253683 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold760 SAMTools SNP 254333 254333 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.14%2C2.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C150:99 scaffold760 SAMTools SNP 256072 256072 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold760 SAMTools SNP 258764 258764 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold760 SAMTools SNP 258771 258771 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold760 SAMTools SNP 258822 258822 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 261387 261387 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold760 SAMTools SNP 261540 261540 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C9%2C0:16 scaffold760 SAMTools SNP 263464 263464 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold760 SAMTools SNP 263482 263482 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C249:99 scaffold760 SAMTools SNP 263495 263495 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C207:99 scaffold760 SAMTools SNP 263814 263814 51.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold760 SAMTools SNP 263900 263900 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold760 SAMTools SNP 264254 264254 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold760 SAMTools SNP 264265 264265 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold760 SAMTools SNP 264312 264312 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold760 SAMTools SNP 265956 265956 20.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C5%2C0:9 scaffold760 SAMTools SNP 267339 267339 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold760 SAMTools SNP 267353 267353 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold760 SAMTools SNP 269011 269011 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 269314 269314 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 269390 269390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.082%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold760 SAMTools SNP 269454 269454 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C19%2C0%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold760 SAMTools SNP 270275 270275 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold760 SAMTools SNP 271040 271040 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold760 SAMTools SNP 271042 271042 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold760 SAMTools SNP 271751 271751 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold760 SAMTools SNP 272886 272886 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C24%2C0:45 scaffold760 SAMTools SNP 272922 272922 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C166:99 scaffold760 SAMTools SNP 273805 273805 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.28%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold760 SAMTools SNP 273806 273806 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 290978 290978 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.5e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C223:47 scaffold760 SAMTools SNP 298461 298461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D226%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C0%2C127%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 299199 299199 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 300145 300145 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C17%2C89%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 300156 300156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C19%2C68%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 300654 300654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C8%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold760 SAMTools SNP 300693 300693 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C33%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 300707 300707 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C25%2C3%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0055%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 301080 301080 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold760 SAMTools SNP 301113 301113 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C4%2C22%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.092%2C1.3e-08%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold760 SAMTools SNP 302752 302752 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D152%2C154%2C109%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C9.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 303937 303937 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D647%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C386%2C214%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 305021 305021 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D574%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C275%2C17%2C249%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 305077 305077 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D678%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C250%2C421%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 305098 305098 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C261%2C78%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.23%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 307136 307136 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold760 SAMTools SNP 309180 309180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C14%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.41%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 319855 319855 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C75%2C0:99 scaffold760 SAMTools SNP 321728 321728 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C123:36 scaffold760 SAMTools SNP 322279 322279 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold760 SAMTools SNP 324009 324009 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C40%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold760 SAMTools SNP 336564 336564 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C38%2C0%2C34%3BMQ%3D50%3BFQ%3D33%3BPV4%3D6.2e-11%2C1.1e-16%2C1%2C2.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold760 SAMTools SNP 337282 337282 35.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold760 SAMTools SNP 337498 337498 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C112%2C7%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 338145 338145 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold760 SAMTools SNP 338205 338205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold760 SAMTools SNP 339139 339139 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold760 SAMTools SNP 339145 339145 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C40%2C19%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C2.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 339262 339262 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C66%2C0:99 scaffold760 SAMTools SNP 339334 339334 26.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0169%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C18:21 scaffold760 SAMTools SNP 339409 339409 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D685%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D362%2C42%2C251%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 339666 339666 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D560%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D202%2C133%2C131%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 340249 340249 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C65%2C7%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.09%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 340824 340824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C27%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 340971 340971 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C14%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 353045 353045 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 353094 353094 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D283%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold760 SAMTools SNP 354407 354407 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.53%2C8.2e-15%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold760 SAMTools SNP 355214 355214 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C335%2C24%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 356281 356281 59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C60%2C1%2C10%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C0.033%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold760 SAMTools SNP 356284 356284 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C60%2C1%2C8%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.44%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold760 SAMTools SNP 356324 356324 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C11%2C47%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 356462 356462 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C7%2C49%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.19%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 356528 356528 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C21%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0092%2C1%2C1%2C0.0074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 356752 356752 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C50%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 356773 356773 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C36%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold760 SAMTools SNP 357710 357710 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C36%3BMQ%3D50%3BFQ%3D-163%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C136%2C0:99 scaffold760 SAMTools SNP 357821 357821 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C114%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 358129 358129 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C98%2C1%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 361206 361206 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D270%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 361227 361227 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 361978 361978 17.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C6%2C0:10 scaffold760 SAMTools SNP 362185 362185 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold760 SAMTools SNP 363612 363612 20.6 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold760 SAMTools SNP 372934 372934 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C17%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 374671 374671 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C171:63 scaffold760 SAMTools SNP 375243 375243 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold760 SAMTools SNP 375466 375466 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold760 SAMTools SNP 375561 375561 84.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C18%2C0:33 scaffold760 SAMTools SNP 376264 376264 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C5%3BMQ%3D47%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold760 SAMTools SNP 378109 378109 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C87%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-06%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 378380 378380 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C34%2C35%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 379232 379232 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C53%2C26%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 379246 379246 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C32%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold760 SAMTools SNP 379924 379924 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C71%2C35%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 380151 380151 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C66%2C0:99 scaffold760 SAMTools SNP 386385 386385 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold760 SAMTools SNP 386425 386425 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold760 SAMTools SNP 386540 386540 3.55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold760 SAMTools SNP 386791 386791 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C53%2C0%2C12%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C2.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold760 SAMTools SNP 391300 391300 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.29%2C1.9e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold760 SAMTools SNP 393361 393361 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold760 SAMTools SNP 393895 393895 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold760 SAMTools SNP 411850 411850 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 413504 413504 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold760 SAMTools SNP 413693 413693 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold760 SAMTools SNP 413736 413736 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold760 SAMTools SNP 415814 415814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold760 SAMTools SNP 416679 416679 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C9%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold760 SAMTools SNP 417685 417685 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C59%2C59%3BMQ%3D50%3BFQ%3D137%3BPV4%3D6.4e-06%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold760 SAMTools SNP 417709 417709 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C57%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.00012%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold760 SAMTools SNP 417716 417716 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C46%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold760 SAMTools SNP 417785 417785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold760 SAMTools SNP 420482 420482 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold760 SAMTools SNP 421309 421309 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 421857 421857 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 422345 422345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 422416 422416 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold760 SAMTools SNP 423064 423064 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold760 SAMTools SNP 423106 423106 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 423950 423950 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C17%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 423974 423974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C26%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 424007 424007 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C6%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 424429 424429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C4%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 461343 461343 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold760 SAMTools SNP 462188 462188 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 462197 462197 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 462548 462548 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 464225 464225 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 466546 466546 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold760 SAMTools SNP 476667 476667 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold760 SAMTools SNP 476725 476725 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.4%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold760 SAMTools SNP 477705 477705 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold760 SAMTools SNP 477754 477754 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold760 SAMTools SNP 479090 479090 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 482163 482163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold760 SAMTools SNP 483200 483200 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold760 SAMTools SNP 483291 483291 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 483662 483662 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 489803 489803 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold760 SAMTools SNP 491925 491925 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C42%2C0:80 scaffold760 SAMTools SNP 492124 492124 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold760 SAMTools SNP 525322 525322 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 525991 525991 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 528857 528857 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 543018 543018 18.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold760 SAMTools SNP 543832 543832 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold760 SAMTools SNP 544884 544884 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold760 SAMTools SNP 549110 549110 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 549131 549131 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 549427 549427 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 549448 549448 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 551024 551024 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 551672 551672 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 552869 552869 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold760 SAMTools SNP 552904 552904 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold760 SAMTools SNP 552953 552953 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 581062 581062 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.0022%2C9.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C172:72 scaffold760 SAMTools SNP 581318 581318 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold760 SAMTools SNP 595205 595205 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.021%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C129:98 scaffold760 SAMTools SNP 598380 598380 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold760 SAMTools SNP 630019 630019 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold760 SAMTools SNP 630261 630261 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold760 SAMTools SNP 630506 630506 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 630741 630741 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold760 SAMTools SNP 654737 654737 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 654806 654806 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold760 SAMTools SNP 654827 654827 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold760 SAMTools SNP 655851 655851 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.28%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold760 SAMTools SNP 656260 656260 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold760 SAMTools SNP 657543 657543 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold760 SAMTools SNP 657775 657775 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 657794 657794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 660829 660829 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 662143 662143 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 662433 662433 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 662463 662463 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C26:39 scaffold760 SAMTools SNP 662470 662470 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold760 SAMTools SNP 662505 662505 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold760 SAMTools SNP 662574 662574 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold760 SAMTools SNP 664396 664396 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold760 SAMTools SNP 665512 665512 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.63%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold760 SAMTools SNP 666329 666329 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 666358 666358 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold760 SAMTools SNP 666380 666380 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold760 SAMTools SNP 666702 666702 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 666723 666723 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 668301 668301 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold760 SAMTools SNP 668303 668303 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold760 SAMTools SNP 669065 669065 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 682446 682446 9.51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D17%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C54%2C0:57 scaffold760 SAMTools SNP 684883 684883 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C0%3BMQ%3D48%3BFQ%3D120%3BPV4%3D1%2C0.32%2C0.13%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C198:99 scaffold760 SAMTools SNP 686111 686111 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C12%2C28%3BMQ%3D45%3BFQ%3D10.4%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C37:40 scaffold760 SAMTools SNP 686112 686112 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C1%2C12%3BMQ%3D45%3BFQ%3D10.4%3BPV4%3D0.15%2C0.08%2C8e-16%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold760 SAMTools SNP 691303 691303 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold760 SAMTools SNP 733396 733396 87 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.063%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold760 SAMTools SNP 733745 733745 67 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold760 SAMTools SNP 733751 733751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C17%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.14%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold760 SAMTools SNP 733961 733961 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C10%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold760 SAMTools SNP 733994 733994 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold760 SAMTools SNP 734334 734334 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.17%2C0.057%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C205:59 scaffold760 SAMTools SNP 734566 734566 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C0.00068%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold760 SAMTools SNP 735119 735119 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold760 SAMTools SNP 735149 735149 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.28%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold760 SAMTools SNP 735651 735651 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C171:99 scaffold760 SAMTools SNP 735663 735663 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C233:66 scaffold760 SAMTools SNP 735684 735684 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.0084%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold760 SAMTools SNP 735706 735706 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.2%2C0.31%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold760 SAMTools SNP 735754 735754 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C13%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.0096%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold760 SAMTools SNP 735762 735762 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.22%2C0.026%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold760 SAMTools SNP 736524 736524 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold760 SAMTools SNP 738248 738248 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.036%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold760 SAMTools SNP 739286 739286 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C72%2C0:99 scaffold760 SAMTools SNP 746847 746847 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 746986 746986 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D29.4%3BPV4%3D0.43%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C57:59 scaffold760 SAMTools SNP 754637 754637 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold760 SAMTools SNP 760004 760004 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold760 SAMTools SNP 760030 760030 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold760 SAMTools SNP 760439 760439 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold760 SAMTools SNP 760466 760466 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold760 SAMTools SNP 761035 761035 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0048%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 761098 761098 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold760 SAMTools SNP 761642 761642 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.2%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C104:99 scaffold760 SAMTools SNP 761648 761648 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.14%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C156:76 scaffold760 SAMTools SNP 761699 761699 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold760 SAMTools SNP 763754 763754 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 769360 769360 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 770320 770320 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 770356 770356 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 770389 770389 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold760 SAMTools SNP 770402 770402 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold760 SAMTools SNP 771069 771069 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.061%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C176:99 scaffold760 SAMTools SNP 771664 771664 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold760 SAMTools SNP 771679 771679 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.067%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold760 SAMTools SNP 771697 771697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C1%2C18%2C5%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.43%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C25:28 scaffold760 SAMTools SNP 771727 771727 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold760 SAMTools SNP 771742 771742 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.12%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold760 SAMTools SNP 772175 772175 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0116%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C230:33 scaffold760 SAMTools SNP 772999 772999 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 773037 773037 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 773577 773577 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C11:14 scaffold760 SAMTools SNP 774103 774103 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold760 SAMTools SNP 774115 774115 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C4%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C231:80 scaffold760 SAMTools SNP 774127 774127 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C25%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.17%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C124:99 scaffold760 SAMTools SNP 774381 774381 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold760 SAMTools SNP 774426 774426 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold760 SAMTools SNP 774469 774469 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 774473 774473 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold760 SAMTools SNP 774480 774480 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold760 SAMTools SNP 774510 774510 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold760 SAMTools SNP 774891 774891 62 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.18%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold760 SAMTools SNP 774953 774953 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.25%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold760 SAMTools SNP 775466 775466 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.53%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold760 SAMTools SNP 775489 775489 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold760 SAMTools SNP 775673 775673 37 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.00063%2C0.0022%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold760 SAMTools SNP 775678 775678 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C57:60 scaffold760 SAMTools SNP 775682 775682 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.048%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C57:60 scaffold760 SAMTools SNP 775852 775852 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C25%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold760 SAMTools SNP 776365 776365 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold760 SAMTools SNP 776772 776772 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold760 SAMTools SNP 776790 776790 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold760 SAMTools SNP 776799 776799 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold760 SAMTools SNP 777234 777234 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C46:49 scaffold760 SAMTools SNP 777394 777394 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C57%2C0:99 scaffold760 SAMTools SNP 777559 777559 85 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C9%2C0:16 scaffold760 SAMTools SNP 777861 777861 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold760 SAMTools SNP 777912 777912 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 778300 778300 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 778369 778369 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C12%2C0:21 scaffold760 SAMTools SNP 778426 778426 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold760 SAMTools SNP 778913 778913 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold760 SAMTools SNP 778951 778951 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold760 SAMTools SNP 779317 779317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold760 SAMTools SNP 779359 779359 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold760 SAMTools SNP 779435 779435 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0085%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold760 SAMTools SNP 781354 781354 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C41%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold760 SAMTools SNP 781620 781620 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 781663 781663 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 785453 785453 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold760 SAMTools SNP 790511 790511 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold760 SAMTools SNP 790567 790567 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D56%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C228:34 scaffold760 SAMTools SNP 790803 790803 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C14%2C15%3BMQ%3D49%3BFQ%3D81%3BPV4%3D0.56%2C4.6e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold760 SAMTools SNP 793460 793460 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.28%2C4.3e-11%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold760 SAMTools SNP 793570 793570 180 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C19%2C12%2C2%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.2%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold760 SAMTools SNP 793737 793737 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C32:35 scaffold760 SAMTools SNP 794815 794815 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C52%3BMQ%3D37%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 794885 794885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold760 SAMTools SNP 794909 794909 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C49%3BMQ%3D39%3BFQ%3D179%3BPV4%3D1%2C2e-41%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C237:99 scaffold760 SAMTools SNP 795094 795094 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 795143 795143 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 795219 795219 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold760 SAMTools SNP 795281 795281 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold760 SAMTools SNP 796069 796069 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold760 SAMTools SNP 796090 796090 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 801802 801802 38.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold760 SAMTools SNP 801807 801807 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold760 SAMTools SNP 802921 802921 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold760 SAMTools SNP 807945 807945 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C87%2C0:99 scaffold760 SAMTools SNP 807989 807989 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold760 SAMTools SNP 808012 808012 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold760 SAMTools SNP 811604 811604 87 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C84%2C0:99 scaffold760 SAMTools SNP 811710 811710 166 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C27%2C12%2C1%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.00094%2C0.037%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold760 SAMTools SNP 812368 812368 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C13%2C0%2C16%3BMQ%3D50%3BFQ%3D30%3BPV4%3D5.3e-12%2C1%2C1%2C4.4e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold760 SAMTools SNP 812388 812388 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C70%2C13%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold760 SAMTools SNP 812411 812411 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C15%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.48%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 812501 812501 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.0022%2C0.0011%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold760 SAMTools SNP 812617 812617 63 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C57%2C0:99 scaffold760 SAMTools SNP 813079 813079 27 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold760 SAMTools SNP 818123 818123 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C3.5e-13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C154:42 scaffold760 SAMTools SNP 818373 818373 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold760 SAMTools SNP 872200 872200 4.76 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D3%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C48%2C0:41 scaffold760 SAMTools SNP 879852 879852 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold760 SAMTools SNP 879890 879890 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold760 SAMTools SNP 879918 879918 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.45%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold760 SAMTools SNP 887278 887278 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C94%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold760 SAMTools SNP 887293 887293 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C26%2C26%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold760 SAMTools SNP 887528 887528 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C25%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C7.8e-37%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C247:96 scaffold760 SAMTools SNP 887538 887538 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C24%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C9e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C246:57 scaffold760 SAMTools SNP 892247 892247 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold760 SAMTools SNP 893455 893455 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0062%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold760 SAMTools SNP 893542 893542 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold760 SAMTools SNP 893716 893716 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold760 SAMTools SNP 893773 893773 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C57:43 scaffold760 SAMTools SNP 893827 893827 76 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold760 SAMTools SNP 893933 893933 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold760 SAMTools SNP 893975 893975 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold760 SAMTools SNP 894359 894359 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold760 SAMTools SNP 894745 894745 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C168:99 scaffold760 SAMTools SNP 895293 895293 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold765 SAMTools SNP 8618 8618 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold765 SAMTools SNP 8760 8760 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold765 SAMTools SNP 8766 8766 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold765 SAMTools SNP 10376 10376 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold765 SAMTools SNP 10758 10758 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 10772 10772 58.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C15%2C0:27 scaffold765 SAMTools SNP 13566 13566 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 19155 19155 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold765 SAMTools SNP 21880 21880 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D44%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold765 SAMTools SNP 24155 24155 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.43%2C1.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C134:30 scaffold765 SAMTools SNP 30579 30579 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 30627 30627 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 41758 41758 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 41821 41821 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.012%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C134:64 scaffold765 SAMTools SNP 41996 41996 49.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold765 SAMTools SNP 42118 42118 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 46437 46437 7.59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold765 SAMTools SNP 46556 46556 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold765 SAMTools SNP 47941 47941 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold765 SAMTools SNP 49439 49439 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 49449 49449 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 49742 49742 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold765 SAMTools SNP 50289 50289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold765 SAMTools SNP 50424 50424 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold765 SAMTools SNP 51151 51151 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C8%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.22%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold765 SAMTools SNP 52778 52778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold765 SAMTools SNP 53777 53777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold765 SAMTools SNP 53783 53783 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold765 SAMTools SNP 55524 55524 146 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold765 SAMTools SNP 56001 56001 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold765 SAMTools SNP 56023 56023 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C1%2C13%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C3.7e-11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold765 SAMTools SNP 56040 56040 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.088%2C0.093%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C230:99 scaffold765 SAMTools SNP 56937 56937 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.43%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C163:76 scaffold765 SAMTools SNP 57661 57661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 57695 57695 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.025%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold765 SAMTools SNP 57785 57785 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 57803 57803 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 58377 58377 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold765 SAMTools SNP 58710 58710 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C37:40 scaffold765 SAMTools SNP 58797 58797 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold765 SAMTools SNP 59179 59179 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 59422 59422 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 59443 59443 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 59991 59991 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 60705 60705 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold765 SAMTools SNP 60711 60711 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 60837 60837 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1.1e-06%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C142:99 scaffold765 SAMTools SNP 60888 60888 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C184:86 scaffold765 SAMTools SNP 60930 60930 181 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.13%2C0.008%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C255:99 scaffold765 SAMTools SNP 61231 61231 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.2%2C0.034%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold765 SAMTools SNP 61257 61257 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold765 SAMTools SNP 61302 61302 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold765 SAMTools SNP 61320 61320 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold765 SAMTools SNP 61653 61653 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold765 SAMTools SNP 62150 62150 17.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C18%2C15%2C47%2C0%2C44:6 scaffold765 SAMTools SNP 62171 62171 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold765 SAMTools SNP 62381 62381 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold765 SAMTools SNP 62636 62636 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold765 SAMTools SNP 62687 62687 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold765 SAMTools SNP 63000 63000 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.46%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C59:62 scaffold765 SAMTools SNP 63096 63096 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold765 SAMTools SNP 63629 63629 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 63683 63683 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 64570 64570 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 64618 64618 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 64693 64693 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 65223 65223 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 65431 65431 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.18%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold765 SAMTools SNP 65486 65486 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C5%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.37%2C0.27%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold765 SAMTools SNP 65522 65522 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold765 SAMTools SNP 65670 65670 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 65711 65711 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold765 SAMTools SNP 65735 65735 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold765 SAMTools SNP 67077 67077 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold765 SAMTools SNP 67084 67084 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold765 SAMTools SNP 67327 67327 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 67339 67339 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 73343 73343 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 88818 88818 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold765 SAMTools SNP 101340 101340 41.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C47%2C41%2C72%2C0%2C69:10 scaffold765 SAMTools SNP 101355 101355 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C174:53 scaffold765 SAMTools SNP 101478 101478 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.27%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold765 SAMTools SNP 101637 101637 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold765 SAMTools SNP 101941 101941 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold765 SAMTools SNP 115273 115273 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5.5e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C182:42 scaffold765 SAMTools SNP 115692 115692 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D10.9%3BPV4%3D0.25%2C0.0007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold765 SAMTools SNP 115902 115902 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold765 SAMTools SNP 117113 117113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold765 SAMTools SNP 117257 117257 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 117278 117278 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold765 SAMTools SNP 119766 119766 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold765 SAMTools SNP 119907 119907 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold765 SAMTools SNP 120126 120126 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold765 SAMTools SNP 120144 120144 175 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold765 SAMTools SNP 120584 120584 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold765 SAMTools SNP 120602 120602 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold765 SAMTools SNP 121033 121033 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold765 SAMTools SNP 121066 121066 168 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.055%2C0.31%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C215:99 scaffold765 SAMTools SNP 123529 123529 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold765 SAMTools SNP 123903 123903 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C28%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold765 SAMTools SNP 130788 130788 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold765 SAMTools SNP 130800 130800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C1%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold765 SAMTools SNP 130900 130900 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C72%2C0%2C25%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.001%2C5.2e-15%2C1%2C6.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold765 SAMTools SNP 130966 130966 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.02%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold765 SAMTools SNP 131355 131355 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C231:99 scaffold765 SAMTools SNP 131991 131991 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold765 SAMTools SNP 132250 132250 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 132441 132441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C23%2C17%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.83%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 134440 134440 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C3%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold765 SAMTools SNP 135566 135566 3.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold765 SAMTools SNP 136121 136121 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold765 SAMTools SNP 136124 136124 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C251:96 scaffold765 SAMTools SNP 141419 141419 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C30%2C0:57 scaffold765 SAMTools SNP 143037 143037 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C91%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold765 SAMTools SNP 146987 146987 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold765 SAMTools SNP 148895 148895 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold765 SAMTools SNP 149315 149315 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold765 SAMTools SNP 149353 149353 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92.9%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C122:99 scaffold765 SAMTools SNP 149905 149905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C2%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold765 SAMTools SNP 160669 160669 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 160687 160687 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 160926 160926 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 161223 161223 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold765 SAMTools SNP 161240 161240 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold765 SAMTools SNP 161295 161295 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold765 SAMTools SNP 161627 161627 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.25%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold765 SAMTools SNP 161825 161825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C195:99 scaffold765 SAMTools SNP 162648 162648 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold765 SAMTools SNP 162964 162964 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold765 SAMTools SNP 163137 163137 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 163205 163205 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 163263 163263 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold765 SAMTools SNP 166322 166322 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.25%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C156:99 scaffold765 SAMTools SNP 166531 166531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold765 SAMTools SNP 167887 167887 209 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold765 SAMTools SNP 168120 168120 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold765 SAMTools SNP 168140 168140 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D1%2C0.24%2C1%2C2.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C241:99 scaffold765 SAMTools SNP 168451 168451 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C33%2C0%2C9%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0025%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold765 SAMTools SNP 168894 168894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 171718 171718 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold765 SAMTools SNP 171975 171975 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold765 SAMTools SNP 172019 172019 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C152:31 scaffold765 SAMTools SNP 172040 172040 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold765 SAMTools SNP 172358 172358 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C6%3BMQ%3D47%3BFQ%3D49%3BPV4%3D0.25%2C0.19%2C0.3%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C76:79 scaffold765 SAMTools SNP 172386 172386 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold765 SAMTools SNP 172402 172402 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold765 SAMTools SNP 179588 179588 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C19%2C9%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.1%2C0.38%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold765 SAMTools SNP 179594 179594 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C19%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold765 SAMTools SNP 179618 179618 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C51%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 179930 179930 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C17%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 179975 179975 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C4%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 180526 180526 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 182083 182083 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 182950 182950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold765 SAMTools SNP 182956 182956 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.064%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold765 SAMTools SNP 182966 182966 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C0%2C10%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.18%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold765 SAMTools SNP 183486 183486 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C39%2C2%2C13%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold765 SAMTools SNP 183519 183519 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1.6e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold765 SAMTools SNP 184025 184025 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.07%2C0.15%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C245:99 scaffold765 SAMTools SNP 185764 185764 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.33%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold765 SAMTools SNP 186411 186411 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C41:44 scaffold765 SAMTools SNP 186463 186463 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold765 SAMTools SNP 187453 187453 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C82%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold765 SAMTools SNP 188869 188869 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 188894 188894 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 195290 195290 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C9%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.083%2C1.5e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold765 SAMTools SNP 196971 196971 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 197020 197020 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 198506 198506 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold765 SAMTools SNP 198528 198528 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold765 SAMTools SNP 200971 200971 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold765 SAMTools SNP 208227 208227 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 208257 208257 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold765 SAMTools SNP 208287 208287 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 208722 208722 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold765 SAMTools SNP 208727 208727 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold765 SAMTools SNP 208734 208734 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold765 SAMTools SNP 210002 210002 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold765 SAMTools SNP 210018 210018 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.49%2C0.078%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C153:99 scaffold765 SAMTools SNP 210042 210042 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold765 SAMTools SNP 210066 210066 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.094%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold765 SAMTools SNP 210546 210546 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold765 SAMTools SNP 210567 210567 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold765 SAMTools SNP 210591 210591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold765 SAMTools SNP 210621 210621 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C23%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C22%2C0:41 scaffold765 SAMTools SNP 210961 210961 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 211740 211740 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C223:99 scaffold765 SAMTools SNP 212487 212487 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C114:31 scaffold765 SAMTools SNP 213057 213057 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C69:65 scaffold765 SAMTools SNP 213062 213062 84.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold765 SAMTools SNP 213068 213068 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.29%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold765 SAMTools SNP 213087 213087 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold765 SAMTools SNP 213779 213779 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold765 SAMTools SNP 214329 214329 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 215127 215127 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold765 SAMTools SNP 215139 215139 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold765 SAMTools SNP 215715 215715 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold765 SAMTools SNP 216216 216216 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold765 SAMTools SNP 216269 216269 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.045%2C1%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold765 SAMTools SNP 216336 216336 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 216867 216867 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold765 SAMTools SNP 217560 217560 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold765 SAMTools SNP 217569 217569 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C19%2C0:35 scaffold765 SAMTools SNP 217593 217593 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold765 SAMTools SNP 218029 218029 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold765 SAMTools SNP 218384 218384 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold765 SAMTools SNP 218408 218408 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold765 SAMTools SNP 218876 218876 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 218897 218897 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 219934 219934 130 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.11%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold765 SAMTools SNP 219946 219946 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.39%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold765 SAMTools SNP 220063 220063 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.25%2C0.28%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold765 SAMTools SNP 220069 220069 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C3%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold765 SAMTools SNP 220078 220078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C24%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold765 SAMTools SNP 222401 222401 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold765 SAMTools SNP 222419 222419 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold765 SAMTools SNP 223331 223331 42.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold765 SAMTools SNP 223430 223430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold765 SAMTools SNP 224021 224021 183 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold765 SAMTools SNP 224072 224072 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C24%2C0:45 scaffold765 SAMTools SNP 224099 224099 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold765 SAMTools SNP 224886 224886 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.37%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 228375 228375 18 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold765 SAMTools SNP 228925 228925 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7576%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C20%2C18%2C246%3BMQ%3D50%3BFQ%3D-194%3BPV4%3D0.0041%2C4.7e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C167%2C0:99 scaffold765 SAMTools SNP 229099 229099 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5166%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D700%2C1555%2C1491%2C1149%3BMQ%3D50%3BFQ%3D91%3BPV4%3D4.6e-72%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold765 SAMTools SNP 230234 230234 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6957%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1048%2C2454%2C441%2C813%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00066%2C1%2C2.7e-12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 230373 230373 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C18:21 scaffold765 SAMTools SNP 230520 230520 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7880%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1492%2C6154%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.35%2C1%2C0.45%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 231835 231835 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 238358 238358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C0%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold765 SAMTools SNP 238388 238388 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C253%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 239310 239310 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C108%2C35%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 239755 239755 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C58%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold765 SAMTools SNP 239785 239785 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 245231 245231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold765 SAMTools SNP 245285 245285 133 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C1%2C5%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold765 SAMTools SNP 245288 245288 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 245312 245312 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C6%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 245804 245804 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C9%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold765 SAMTools SNP 245974 245974 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C53%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 246917 246917 141 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold765 SAMTools SNP 247626 247626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 247628 247628 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C70%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.035%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 248261 248261 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C4%2C5%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.026%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold765 SAMTools SNP 248264 248264 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C11%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.54%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold765 SAMTools SNP 248300 248300 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.19%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold765 SAMTools SNP 248345 248345 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold765 SAMTools SNP 248369 248369 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold765 SAMTools SNP 249069 249069 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold765 SAMTools SNP 249129 249129 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 249169 249169 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.095%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold765 SAMTools SNP 249500 249500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C4%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold765 SAMTools SNP 250132 250132 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold765 SAMTools SNP 251572 251572 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold765 SAMTools SNP 252128 252128 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold765 SAMTools SNP 254528 254528 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C21%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold765 SAMTools SNP 254561 254561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold765 SAMTools SNP 255003 255003 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold765 SAMTools SNP 256322 256322 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold765 SAMTools SNP 256388 256388 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold765 SAMTools SNP 257383 257383 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold765 SAMTools SNP 257604 257604 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold765 SAMTools SNP 257617 257617 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold765 SAMTools SNP 261652 261652 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold765 SAMTools SNP 263429 263429 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold765 SAMTools SNP 298455 298455 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C18%3BMQ%3D17%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C193%2C0:99 scaffold765 SAMTools SNP 299699 299699 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C27%2C0:51 scaffold765 SAMTools SNP 299870 299870 28.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold765 SAMTools SNP 300605 300605 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C55%2C32%2C0%3BMQ%3D49%3BFQ%3D115%3BPV4%3D2.4e-09%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold765 SAMTools SNP 300712 300712 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold765 SAMTools SNP 300725 300725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold765 SAMTools SNP 301194 301194 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C12%2C63%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.16%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold765 SAMTools SNP 322023 322023 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C0.24%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C177:99 scaffold765 SAMTools SNP 322758 322758 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C235:99 scaffold765 SAMTools SNP 322777 322777 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.0093%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold765 SAMTools SNP 322785 322785 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C11%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.012%2C3.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold765 SAMTools SNP 326514 326514 194 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold765 SAMTools SNP 326519 326519 194 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold766 SAMTools SNP 5511 5511 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.018%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C248:31 scaffold766 SAMTools SNP 7503 7503 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C29:32 scaffold766 SAMTools SNP 7549 7549 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold766 SAMTools SNP 8190 8190 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold766 SAMTools SNP 8226 8226 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold766 SAMTools SNP 27811 27811 14.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold766 SAMTools SNP 28431 28431 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold766 SAMTools SNP 34980 34980 106 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C21%2C0%2C128%2C1%2C125:39 scaffold766 SAMTools SNP 35227 35227 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C124:99 scaffold766 SAMTools SNP 35247 35247 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold766 SAMTools SNP 37517 37517 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold766 SAMTools SNP 37646 37646 8.22 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold766 SAMTools SNP 37967 37967 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1.9e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C102:99 scaffold766 SAMTools SNP 39287 39287 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold766 SAMTools SNP 72714 72714 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C33%2C0:63 scaffold767 SAMTools SNP 7919 7919 53.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold767 SAMTools SNP 18623 18623 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C14%2C50%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 19004 19004 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.3%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 19243 19243 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C23%2C13%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.65%2C1%2C0.03%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 19600 19600 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C20%2C10%2C23%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.2%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 19819 19819 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C12%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.79%2C1%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 22469 22469 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold767 SAMTools SNP 22496 22496 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.048%2C0.0022%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C189:33 scaffold767 SAMTools SNP 23619 23619 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0012%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.29%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold767 SAMTools SNP 24010 24010 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold767 SAMTools SNP 24012 24012 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold767 SAMTools SNP 24170 24170 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.1%2C0.24%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold767 SAMTools SNP 24248 24248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C24%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold767 SAMTools SNP 24562 24562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold767 SAMTools SNP 24734 24734 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C10%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold767 SAMTools SNP 24782 24782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold767 SAMTools SNP 24911 24911 196 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold767 SAMTools SNP 25248 25248 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold767 SAMTools SNP 25471 25471 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold767 SAMTools SNP 25736 25736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 26089 26089 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.025%2C2e-05%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold767 SAMTools SNP 30240 30240 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold767 SAMTools SNP 30245 30245 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 30513 30513 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C89:92 scaffold767 SAMTools SNP 30522 30522 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0089%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold767 SAMTools SNP 34755 34755 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold767 SAMTools SNP 34789 34789 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold767 SAMTools SNP 34799 34799 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 43773 43773 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C6%2C23%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 46518 46518 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C62%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 46567 46567 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C73%2C9%2C20%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.0091%2C0.16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold767 SAMTools SNP 46576 46576 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C104%2C76%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.51%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold767 SAMTools SNP 49410 49410 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold767 SAMTools SNP 50298 50298 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C35%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold767 SAMTools SNP 50405 50405 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C20%2C31%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 51260 51260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 51314 51314 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold767 SAMTools SNP 51415 51415 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00012%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C32:35 scaffold767 SAMTools SNP 51507 51507 72.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D1%2C6.2e-12%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C19%2C0:35 scaffold767 SAMTools SNP 51913 51913 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold767 SAMTools SNP 51940 51940 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold767 SAMTools SNP 52544 52544 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.02%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 52562 52562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold767 SAMTools SNP 52583 52583 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C15%2C0:27 scaffold767 SAMTools SNP 55460 55460 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C20%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold767 SAMTools SNP 55463 55463 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C15%2C6%2C5%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold767 SAMTools SNP 55743 55743 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D84%2C40%2C50%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1.8e-07%2C4.1e-62%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold767 SAMTools SNP 55845 55845 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C105%2C16%2C36%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.36%2C1%2C0.42%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 60382 60382 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-121%3BPV4%3D1%2C9.4e-26%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C94%2C0:99 scaffold767 SAMTools SNP 60458 60458 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C37%2C14%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D6.6e-07%2C1%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold767 SAMTools SNP 63739 63739 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 63742 63742 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 65443 65443 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold767 SAMTools SNP 70233 70233 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0090%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 70771 70771 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold767 SAMTools SNP 256493 256493 21.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold767 SAMTools SNP 256680 256680 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D741%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C42%2C0:81 scaffold767 SAMTools SNP 268458 268458 42.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold767 SAMTools SNP 268494 268494 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C18%2C0:33 scaffold767 SAMTools SNP 269124 269124 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.43%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C195:99 scaffold767 SAMTools SNP 269133 269133 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold767 SAMTools SNP 269675 269675 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold767 SAMTools SNP 269676 269676 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold767 SAMTools SNP 269726 269726 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 269732 269732 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold767 SAMTools SNP 269791 269791 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold767 SAMTools SNP 270727 270727 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold767 SAMTools SNP 270754 270754 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 270798 270798 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.47%2C0.048%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold767 SAMTools SNP 271283 271283 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.22%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold767 SAMTools SNP 272343 272343 97 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.52%2C0.084%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C182:99 scaffold767 SAMTools SNP 273064 273064 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 273076 273076 3.54 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold767 SAMTools SNP 273609 273609 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 273851 273851 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold767 SAMTools SNP 277387 277387 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold767 SAMTools SNP 277455 277455 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold767 SAMTools SNP 279580 279580 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.28%2C0.023%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold767 SAMTools SNP 283318 283318 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C13%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold767 SAMTools SNP 283369 283369 163 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold767 SAMTools SNP 283417 283417 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.2%2C0.16%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold767 SAMTools SNP 285161 285161 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold767 SAMTools SNP 285393 285393 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 285930 285930 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 286323 286323 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold767 SAMTools SNP 286419 286419 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold767 SAMTools SNP 286911 286911 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.4%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C123:49 scaffold767 SAMTools SNP 286936 286936 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.042%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold767 SAMTools SNP 288152 288152 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold767 SAMTools SNP 295171 295171 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.015%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold767 SAMTools SNP 295226 295226 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C240:99 scaffold767 SAMTools SNP 295801 295801 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C18%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.5%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 297768 297768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold767 SAMTools SNP 298271 298271 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold767 SAMTools SNP 298752 298752 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 298773 298773 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 299888 299888 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C104%2C3%2C102%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 299929 299929 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold767 SAMTools SNP 301123 301123 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold767 SAMTools SNP 302830 302830 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 302848 302848 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 304522 304522 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold767 SAMTools SNP 305161 305161 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold767 SAMTools SNP 305210 305210 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold767 SAMTools SNP 309834 309834 63.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold767 SAMTools SNP 310761 310761 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C194:99 scaffold767 SAMTools SNP 311231 311231 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C10%3BMQ%3D44%3BFQ%3D224%3BPV4%3D1%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold767 SAMTools SNP 311304 311304 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C8%3BMQ%3D49%3BFQ%3D35%3BPV4%3D0.25%2C3.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold767 SAMTools SNP 312368 312368 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C19%2C0%3BMQ%3D48%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C203:99 scaffold767 SAMTools SNP 313060 313060 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D43%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold767 SAMTools SNP 315192 315192 27.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D27%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C21%2C0:38 scaffold767 SAMTools SNP 316512 316512 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold767 SAMTools SNP 316565 316565 24.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold767 SAMTools SNP 316926 316926 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C8%2C5%3BMQ%3D34%3BFQ%3D-38%3BPV4%3D0.11%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C11%2C0:19 scaffold767 SAMTools SNP 317007 317007 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C6%3BMQ%3D38%3BFQ%3D98%3BPV4%3D0.24%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C125:99 scaffold767 SAMTools SNP 319224 319224 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 319245 319245 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 320668 320668 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 320804 320804 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C7%3BMQ%3D48%3BFQ%3D164%3BPV4%3D0.4%2C0.27%2C0.035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold767 SAMTools SNP 322861 322861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C4%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.48%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold767 SAMTools SNP 323041 323041 154 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C48%2C0:93 scaffold767 SAMTools SNP 323077 323077 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold767 SAMTools SNP 323179 323179 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold767 SAMTools SNP 323435 323435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold767 SAMTools SNP 323648 323648 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold767 SAMTools SNP 324298 324298 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D41%3BFQ%3D47%3BPV4%3D1%2C0.074%2C0.36%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C153:77 scaffold767 SAMTools SNP 324418 324418 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold767 SAMTools SNP 331884 331884 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 332046 332046 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 332555 332555 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold767 SAMTools SNP 333777 333777 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 343968 343968 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold767 SAMTools SNP 344420 344420 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold767 SAMTools SNP 344450 344450 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold767 SAMTools SNP 346800 346800 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 346836 346836 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 347318 347318 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 348278 348278 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 357486 357486 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 359611 359611 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 364572 364572 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 381778 381778 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold767 SAMTools SNP 382937 382937 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold767 SAMTools SNP 382962 382962 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold767 SAMTools SNP 385428 385428 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold767 SAMTools SNP 385585 385585 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold767 SAMTools SNP 388984 388984 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C6%2C9%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.74%2C9.6e-28%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold767 SAMTools SNP 389080 389080 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C12%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C93%2C0:99 scaffold767 SAMTools SNP 389748 389748 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C127:99 scaffold767 SAMTools SNP 390334 390334 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold767 SAMTools SNP 392818 392818 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 392819 392819 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 392833 392833 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 393160 393160 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold767 SAMTools SNP 393274 393274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold767 SAMTools SNP 394102 394102 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold767 SAMTools SNP 395102 395102 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold767 SAMTools SNP 396528 396528 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 396573 396573 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold767 SAMTools SNP 396600 396600 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold767 SAMTools SNP 396650 396650 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold767 SAMTools SNP 396668 396668 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold767 SAMTools SNP 397810 397810 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold767 SAMTools SNP 403912 403912 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C196:99 scaffold767 SAMTools SNP 408671 408671 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.11%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold767 SAMTools SNP 409399 409399 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold77 SAMTools SNP 2092 2092 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C141:31 scaffold77 SAMTools SNP 2319 2319 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D47%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C224:69 scaffold77 SAMTools SNP 2332 2332 89 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C2%3BMQ%3D47%3BFQ%3D92%3BPV4%3D1%2C1%2C0.15%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C193:99 scaffold77 SAMTools SNP 2597 2597 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold77 SAMTools SNP 3094 3094 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 3140 3140 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold77 SAMTools SNP 41244 41244 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C146:99 scaffold77 SAMTools SNP 54025 54025 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 69137 69137 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0022%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold77 SAMTools SNP 69146 69146 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.31%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold77 SAMTools SNP 70231 70231 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold77 SAMTools SNP 70235 70235 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold77 SAMTools SNP 71517 71517 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold77 SAMTools SNP 76694 76694 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold77 SAMTools SNP 78329 78329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold77 SAMTools SNP 78380 78380 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.26%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C242:99 scaffold77 SAMTools SNP 79664 79664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C6%2C34%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.038%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold77 SAMTools SNP 82204 82204 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold77 SAMTools SNP 82214 82214 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.57%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C225:99 scaffold77 SAMTools SNP 82220 82220 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C221:99 scaffold77 SAMTools SNP 82250 82250 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.14%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C157:99 scaffold77 SAMTools SNP 82811 82811 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 82847 82847 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold77 SAMTools SNP 85608 85608 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 85758 85758 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold77 SAMTools SNP 86753 86753 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C60:63 scaffold77 SAMTools SNP 87776 87776 72.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C21%2C0:39 scaffold77 SAMTools SNP 88575 88575 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold77 SAMTools SNP 88983 88983 34.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold77 SAMTools SNP 90192 90192 62.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.21%2C5.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C8:11 scaffold77 SAMTools SNP 90209 90209 32.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.29%2C6.3e-14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C8:11 scaffold77 SAMTools SNP 93614 93614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C25%2C18%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 94070 94070 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold77 SAMTools SNP 94169 94169 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C60%2C0:99 scaffold77 SAMTools SNP 94235 94235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold77 SAMTools SNP 95776 95776 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.036%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C130:33 scaffold77 SAMTools SNP 96844 96844 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.27%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C200:99 scaffold77 SAMTools SNP 100360 100360 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100375 100375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100411 100411 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100702 100702 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C24%2C42%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100844 100844 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C19%2C33%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100859 100859 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D289%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C23%2C53%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 100964 100964 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C103%2C1%2C100%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.37%2C4.5e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold77 SAMTools SNP 101015 101015 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C91%2C3%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C7.2e-104%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 101161 101161 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 101229 101229 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.25%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C191:99 scaffold77 SAMTools SNP 101233 101233 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0063%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.029%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C35:38 scaffold77 SAMTools SNP 101235 101235 68.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold77 SAMTools SNP 101279 101279 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C3%2C14%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.6%2C5e-19%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C246:90 scaffold77 SAMTools SNP 101641 101641 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C85%2C4%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.7e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 101929 101929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold77 SAMTools SNP 101989 101989 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold77 SAMTools SNP 102686 102686 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold77 SAMTools SNP 103616 103616 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C210:34 scaffold77 SAMTools SNP 105442 105442 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.11%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold77 SAMTools SNP 105640 105640 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C230:99 scaffold77 SAMTools SNP 105688 105688 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.053%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C253:99 scaffold77 SAMTools SNP 106020 106020 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold77 SAMTools SNP 106478 106478 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C237:99 scaffold77 SAMTools SNP 108600 108600 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold77 SAMTools SNP 108689 108689 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.019%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold77 SAMTools SNP 111766 111766 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 112178 112178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C27%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.44%2C0.29%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C38:41 scaffold77 SAMTools SNP 121506 121506 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 143885 143885 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 149124 149124 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.36%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold77 SAMTools SNP 149208 149208 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold77 SAMTools SNP 149298 149298 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold77 SAMTools SNP 152327 152327 140 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C8%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.35%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C69%2C65%2C164%2C0%2C177:7 scaffold77 SAMTools SNP 152370 152370 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.075%2C0.00013%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold77 SAMTools SNP 153974 153974 117 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C81%2C0:99 scaffold77 SAMTools SNP 154435 154435 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C11%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1.5e-13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C176:99 scaffold77 SAMTools SNP 154543 154543 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C5%2C33%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.69%2C6.4e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold77 SAMTools SNP 154621 154621 53.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold77 SAMTools SNP 154852 154852 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold77 SAMTools SNP 156295 156295 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.48%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold77 SAMTools SNP 156732 156732 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold77 SAMTools SNP 157827 157827 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C19%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold77 SAMTools SNP 158368 158368 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C15%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold77 SAMTools SNP 158522 158522 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.17%2C0.2%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C152:99 scaffold77 SAMTools SNP 158728 158728 215 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold77 SAMTools SNP 158757 158757 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold77 SAMTools SNP 158985 158985 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.56%2C0.16%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C246:99 scaffold77 SAMTools SNP 159184 159184 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold77 SAMTools SNP 168916 168916 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 168935 168935 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.079%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 172363 172363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C25%2C21%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 173821 173821 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C27%2C0:51 scaffold77 SAMTools SNP 174148 174148 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold77 SAMTools SNP 174216 174216 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.2%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold77 SAMTools SNP 174218 174218 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C14%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C75:78 scaffold77 SAMTools SNP 174366 174366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold77 SAMTools SNP 174735 174735 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold77 SAMTools SNP 174745 174745 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold77 SAMTools SNP 175049 175049 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.24%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C69:72 scaffold77 SAMTools SNP 175613 175613 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.22%2C0.12%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold77 SAMTools SNP 175624 175624 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.62%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold77 SAMTools SNP 175926 175926 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C6%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold77 SAMTools SNP 175977 175977 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.049%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 176619 176619 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C236:99 scaffold77 SAMTools SNP 179559 179559 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 180134 180134 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C23%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold77 SAMTools SNP 180843 180843 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold77 SAMTools SNP 181105 181105 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 181122 181122 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 181320 181320 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.56%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold77 SAMTools SNP 181347 181347 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C20%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.14%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold77 SAMTools SNP 181888 181888 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C37%2C0%2C22%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.00011%2C7.2e-11%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold77 SAMTools SNP 182297 182297 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.16%2C1%2C1%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold77 SAMTools SNP 183381 183381 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C31%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.46%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 189708 189708 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.042%2C0.057%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 189730 189730 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.33%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C154:75 scaffold77 SAMTools SNP 190022 190022 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-4.74%3BPV4%3D1%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C25:28 scaffold77 SAMTools SNP 190253 190253 39.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold77 SAMTools SNP 207493 207493 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 207704 207704 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold77 SAMTools SNP 207724 207724 161 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D2.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold77 SAMTools SNP 207905 207905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C42%3BMQ%3D49%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold77 SAMTools SNP 208040 208040 18.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold77 SAMTools SNP 214436 214436 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C7%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C3.1e-05%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C223:41 scaffold77 SAMTools SNP 215395 215395 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C40%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold77 SAMTools SNP 215419 215419 96 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.3%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold77 SAMTools SNP 216781 216781 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold77 SAMTools SNP 216817 216817 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold77 SAMTools SNP 218270 218270 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C38%2C21%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold77 SAMTools SNP 218559 218559 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C1%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 218612 218612 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C60%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C181%2C0:99 scaffold77 SAMTools SNP 219253 219253 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 222730 222730 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.2%2C2.5e-06%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C223:37 scaffold77 SAMTools SNP 222765 222765 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold77 SAMTools SNP 222871 222871 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold77 SAMTools SNP 226560 226560 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 240101 240101 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 244441 244441 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C158:31 scaffold77 SAMTools SNP 248709 248709 44.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold77 SAMTools SNP 249554 249554 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.43%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C95:46 scaffold77 SAMTools SNP 249915 249915 73 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C23%2C14%2C102%2C0%2C99:16 scaffold77 SAMTools SNP 250377 250377 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C18%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.026%2C5.4e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold77 SAMTools SNP 250579 250579 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 252309 252309 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.016%2C0.41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold77 SAMTools SNP 253673 253673 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold77 SAMTools SNP 254988 254988 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 255202 255202 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold77 SAMTools SNP 259217 259217 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C5.1e-06%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C71:73 scaffold77 SAMTools SNP 259812 259812 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold77 SAMTools SNP 283528 283528 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0046%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold77 SAMTools SNP 283868 283868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold77 SAMTools SNP 287215 287215 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold77 SAMTools SNP 320443 320443 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold77 SAMTools SNP 328255 328255 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.13%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C127:57 scaffold77 SAMTools SNP 329945 329945 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C230:79 scaffold77 SAMTools SNP 340116 340116 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold77 SAMTools SNP 340128 340128 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.17%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C237:86 scaffold77 SAMTools SNP 340804 340804 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold77 SAMTools SNP 341182 341182 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold77 SAMTools SNP 341495 341495 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold77 SAMTools SNP 341799 341799 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold77 SAMTools SNP 341874 341874 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold77 SAMTools SNP 342205 342205 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold77 SAMTools SNP 342251 342251 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 342277 342277 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 342541 342541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold77 SAMTools SNP 342564 342564 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold77 SAMTools SNP 342581 342581 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C247:65 scaffold77 SAMTools SNP 342774 342774 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 342786 342786 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 374328 374328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 377660 377660 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold77 SAMTools SNP 377671 377671 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold77 SAMTools SNP 379863 379863 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C11%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.52%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold77 SAMTools SNP 499645 499645 125 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C7%2C0%3BMQ%3D49%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C240:99 scaffold77 SAMTools SNP 502361 502361 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C0%3BMQ%3D49%3BFQ%3D188%3BPV4%3D0.48%2C0.024%2C0.17%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold77 SAMTools SNP 502371 502371 113 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D48%3BFQ%3D116%3BPV4%3D1%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C253:99 scaffold77 SAMTools SNP 504715 504715 18.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold77 SAMTools SNP 526131 526131 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 532155 532155 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold77 SAMTools SNP 532177 532177 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 532771 532771 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D0.25%2C0%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold77 SAMTools SNP 532925 532925 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C20%2C3%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C1.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold77 SAMTools SNP 532938 532938 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C22%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.5%2C8.3e-41%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold77 SAMTools SNP 533985 533985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C21%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 534008 534008 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C13%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold77 SAMTools SNP 534078 534078 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C16%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.0085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 534538 534538 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.15%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 534541 534541 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C31%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold77 SAMTools SNP 534621 534621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C15%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold77 SAMTools SNP 534964 534964 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.026%2C0.13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold77 SAMTools SNP 535629 535629 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C4%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold77 SAMTools SNP 535653 535653 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 536366 536366 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold77 SAMTools SNP 536527 536527 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 536917 536917 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 536935 536935 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 537138 537138 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold77 SAMTools SNP 537310 537310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold77 SAMTools SNP 537352 537352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C17%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold77 SAMTools SNP 537685 537685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C33%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold77 SAMTools SNP 537742 537742 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C20%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 538756 538756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 539707 539707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D48%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold77 SAMTools SNP 539755 539755 92.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold77 SAMTools SNP 540381 540381 214 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C5%2C2%2C13%3BMQ%3D37%3BFQ%3D-34%3BPV4%3D0.038%2C0.018%2C1%2C7.6e-05;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C7%2C0%2C253%2C15%2C229:12 scaffold77 SAMTools SNP 543483 543483 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C16%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C217:99 scaffold77 SAMTools SNP 550997 550997 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C93%2C0:99 scaffold77 SAMTools SNP 551177 551177 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D46%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C33%2C0:63 scaffold77 SAMTools SNP 551352 551352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold77 SAMTools SNP 551398 551398 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold77 SAMTools SNP 614770 614770 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 733388 733388 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 740607 740607 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 740641 740641 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 755162 755162 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 763255 763255 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 763285 763285 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 763520 763520 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C7.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C182:42 scaffold77 SAMTools SNP 764448 764448 52.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold77 SAMTools SNP 764685 764685 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold77 SAMTools SNP 765965 765965 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.073%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C100:33 scaffold77 SAMTools SNP 766289 766289 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 770403 770403 9.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C9%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.52%2C4.2e-11%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold77 SAMTools SNP 770942 770942 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C202:53 scaffold77 SAMTools SNP 770966 770966 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C187:56 scaffold77 SAMTools SNP 771131 771131 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold77 SAMTools SNP 771891 771891 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold77 SAMTools SNP 775976 775976 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 776069 776069 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C22%2C3%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.35%2C3.5e-37%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold77 SAMTools SNP 776117 776117 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 776146 776146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C40%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold77 SAMTools SNP 776689 776689 77.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C21%2C0:39 scaffold77 SAMTools SNP 777179 777179 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C22%2C16%2C9%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.81%2C5.5e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold77 SAMTools SNP 777233 777233 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C57%2C0:99 scaffold77 SAMTools SNP 777524 777524 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C55%2C6%2C25%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.62%2C1.8e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold77 SAMTools SNP 777605 777605 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C15%2C16%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.63%2C3.1e-46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold77 SAMTools SNP 777801 777801 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold77 SAMTools SNP 778918 778918 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C27%2C0:51 scaffold77 SAMTools SNP 778985 778985 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C14%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold77 SAMTools SNP 787711 787711 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 789095 789095 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 789099 789099 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold77 SAMTools SNP 790156 790156 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C15%2C8%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.16%2C6.4e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold77 SAMTools SNP 790561 790561 35.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C6:9 scaffold77 SAMTools SNP 790587 790587 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 790620 790620 154 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C95:98 scaffold77 SAMTools SNP 791087 791087 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C23%2C40%3BMQ%3D50%3BFQ%3D-177%3BPV4%3D1%2C1%2C0.45%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C150%2C0:99 scaffold77 SAMTools SNP 792888 792888 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold77 SAMTools SNP 794737 794737 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.32%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold77 SAMTools SNP 794760 794760 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 794903 794903 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C74:28 scaffold77 SAMTools SNP 796800 796800 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold77 SAMTools SNP 802449 802449 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold77 SAMTools SNP 802599 802599 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold77 SAMTools SNP 833622 833622 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C87%2C0:99 scaffold77 SAMTools SNP 833716 833716 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.29%2C6.4e-08%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold77 SAMTools SNP 834193 834193 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold77 SAMTools SNP 834856 834856 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 834932 834932 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold77 SAMTools SNP 835448 835448 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 836601 836601 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold77 SAMTools SNP 875695 875695 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 875731 875731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C41%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold77 SAMTools SNP 877089 877089 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold77 SAMTools SNP 878279 878279 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 878697 878697 52.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold77 SAMTools SNP 878806 878806 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.2%2C0.14%2C1%2C0.00082;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C250:99 scaffold77 SAMTools SNP 881961 881961 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 883276 883276 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.063%2C1%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold77 SAMTools SNP 883288 883288 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.2%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 884002 884002 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.031%2C0.43%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold77 SAMTools SNP 884461 884461 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold77 SAMTools SNP 884463 884463 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold77 SAMTools SNP 890127 890127 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.3%2C3e-27%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C246:60 scaffold77 SAMTools SNP 890259 890259 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold77 SAMTools SNP 894268 894268 9.31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold77 SAMTools SNP 896045 896045 3.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold77 SAMTools SNP 918169 918169 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 918368 918368 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 921407 921407 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0048%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C192:50 scaffold77 SAMTools SNP 921411 921411 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.31%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C192:56 scaffold77 SAMTools SNP 921429 921429 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C12%2C0:21 scaffold77 SAMTools SNP 921439 921439 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.59%2C0.27%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C247:99 scaffold77 SAMTools SNP 921593 921593 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold77 SAMTools SNP 921934 921934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold77 SAMTools SNP 921976 921976 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C27%2C0:51 scaffold77 SAMTools SNP 921991 921991 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 921994 921994 52.8 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C86%2C80%2C86%2C0%2C80:10 scaffold77 SAMTools SNP 922304 922304 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C215:99 scaffold77 SAMTools SNP 922322 922322 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C215:99 scaffold77 SAMTools SNP 922707 922707 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C36%2C0:69 scaffold77 SAMTools SNP 922898 922898 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.015%2C1%2C1%2C1.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C209:60 scaffold77 SAMTools SNP 922920 922920 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C146:99 scaffold77 SAMTools SNP 923323 923323 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 923458 923458 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold77 SAMTools SNP 923712 923712 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold77 SAMTools SNP 926201 926201 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold77 SAMTools SNP 927736 927736 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C90%2C19%2C80%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 928774 928774 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.00012%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold77 SAMTools SNP 928815 928815 148 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.013%2C0.066%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C252:99 scaffold77 SAMTools SNP 930277 930277 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold77 SAMTools SNP 935369 935369 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 938858 938858 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold77 SAMTools SNP 939027 939027 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold77 SAMTools SNP 939412 939412 141 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C166:99 scaffold77 SAMTools SNP 939449 939449 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.45%2C0.00056%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C166:96 scaffold77 SAMTools SNP 942845 942845 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold77 SAMTools SNP 944331 944331 40.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold77 SAMTools SNP 959146 959146 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 959285 959285 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 959314 959314 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 962139 962139 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold77 SAMTools SNP 962277 962277 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.15%2C0.0041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C233:99 scaffold77 SAMTools SNP 962585 962585 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.33%2C1.1e-10%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C115:33 scaffold77 SAMTools SNP 966863 966863 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.3e-33%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C190:60 scaffold77 SAMTools SNP 966952 966952 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C3%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold77 SAMTools SNP 966976 966976 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 967261 967261 6.79 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold77 SAMTools SNP 968184 968184 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C41%2C2%2C9%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold77 SAMTools SNP 968186 968186 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C0%2C8%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold77 SAMTools SNP 968243 968243 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C9%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold77 SAMTools SNP 968430 968430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 968594 968594 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C8%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 968750 968750 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C39%2C0:75 scaffold77 SAMTools SNP 968858 968858 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C17%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0019%2C5.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold77 SAMTools SNP 968897 968897 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.6%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold77 SAMTools SNP 969041 969041 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 969047 969047 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold77 SAMTools SNP 969192 969192 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold77 SAMTools SNP 969490 969490 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold77 SAMTools SNP 969514 969514 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold77 SAMTools SNP 969669 969669 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C242:99 scaffold77 SAMTools SNP 970064 970064 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D26.7%3BPV4%3D1%2C0.0093%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C65:57 scaffold77 SAMTools SNP 970076 970076 45 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C6.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C35:38 scaffold77 SAMTools SNP 970148 970148 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.22%2C1.2e-23%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold77 SAMTools SNP 970331 970331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C21%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 970333 970333 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 970953 970953 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold77 SAMTools SNP 971769 971769 29 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.63%2C3.4e-15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold77 SAMTools SNP 971994 971994 14.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold77 SAMTools SNP 972137 972137 43.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold77 SAMTools SNP 972183 972183 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 972210 972210 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold77 SAMTools SNP 972602 972602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold77 SAMTools SNP 972741 972741 26.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C9:12 scaffold77 SAMTools SNP 972759 972759 78.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold77 SAMTools SNP 972794 972794 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C12%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.28%2C4.6e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold77 SAMTools SNP 973103 973103 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C93%2C0:99 scaffold77 SAMTools SNP 1021064 1021064 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 1022489 1022489 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold77 SAMTools SNP 1022733 1022733 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C112:30 scaffold77 SAMTools SNP 1031320 1031320 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C35:35 scaffold77 SAMTools SNP 1055737 1055737 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold77 SAMTools SNP 1056969 1056969 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D45%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C133:99 scaffold77 SAMTools SNP 1060751 1060751 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.29%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C7%2C0:12 scaffold77 SAMTools SNP 1061435 1061435 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold77 SAMTools SNP 1061466 1061466 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1061544 1061544 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold77 SAMTools SNP 1071404 1071404 139 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C21%2C0:39 scaffold77 SAMTools SNP 1071443 1071443 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1071455 1071455 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold77 SAMTools SNP 1082924 1082924 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C34%2C25%2C3%3BMQ%3D41%3BFQ%3D225%3BPV4%3D1.3e-06%2C1%2C0.19%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1082932 1082932 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C34%2C15%2C2%3BMQ%3D46%3BFQ%3D225%3BPV4%3D5.6e-07%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1083000 1083000 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C10%3BMQ%3D28%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C77:80 scaffold77 SAMTools SNP 1083027 1083027 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C9%2C0%2C14%3BMQ%3D33%3BFQ%3D-33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C6%2C0:10 scaffold77 SAMTools SNP 1085217 1085217 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold77 SAMTools SNP 1085510 1085510 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C6.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1086071 1086071 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 1086091 1086091 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold77 SAMTools SNP 1086097 1086097 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold77 SAMTools SNP 1087688 1087688 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C43%2C0%3BMQ%3D39%3BFQ%3D208%3BPV4%3D0.46%2C0.075%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold77 SAMTools SNP 1090358 1090358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D48%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold77 SAMTools SNP 1091161 1091161 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C44%2C1%2C53%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1.1e-23%2C3.9e-28%2C1%2C3.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold77 SAMTools SNP 1091593 1091593 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C92%2C1%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0035%2C6e-05%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1091598 1091598 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C89%2C1%2C48%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold77 SAMTools SNP 1094020 1094020 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold77 SAMTools SNP 1094092 1094092 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold77 SAMTools SNP 1094379 1094379 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C242:99 scaffold77 SAMTools SNP 1094382 1094382 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C26:29 scaffold77 SAMTools SNP 1094497 1094497 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold77 SAMTools SNP 1095144 1095144 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C65%2C6%3BMQ%3D50%3BFQ%3D-205%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold77 SAMTools SNP 1096898 1096898 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D47%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C93%2C0:99 scaffold77 SAMTools SNP 1098293 1098293 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold77 SAMTools SNP 1098584 1098584 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold77 SAMTools SNP 1099020 1099020 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold77 SAMTools SNP 1099194 1099194 202 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.46%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold77 SAMTools SNP 1099881 1099881 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold77 SAMTools SNP 1099890 1099890 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold77 SAMTools SNP 1100509 1100509 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C86%2C29%2C37%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.013%2C4.3e-61%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold77 SAMTools SNP 1106759 1106759 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold77 SAMTools SNP 1123730 1123730 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold77 SAMTools SNP 1132174 1132174 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1133233 1133233 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C27%2C0:51 scaffold77 SAMTools SNP 1135125 1135125 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold77 SAMTools SNP 1136030 1136030 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C66%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1136060 1136060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold77 SAMTools SNP 1136063 1136063 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C36%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold77 SAMTools SNP 1136525 1136525 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C67%2C22%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.45%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1139075 1139075 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C54%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C172%2C0:99 scaffold77 SAMTools SNP 1139082 1139082 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold77 SAMTools SNP 1142213 1142213 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 1145402 1145402 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.56%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold77 SAMTools SNP 1145423 1145423 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold77 SAMTools SNP 1145427 1145427 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.00031%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold77 SAMTools SNP 1147428 1147428 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C15%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.55%2C0.32%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold77 SAMTools SNP 1148408 1148408 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold77 SAMTools SNP 1148431 1148431 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold77 SAMTools SNP 1150730 1150730 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C112:99 scaffold77 SAMTools SNP 1151544 1151544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold77 SAMTools SNP 1152695 1152695 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.48%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold77 SAMTools SNP 1152715 1152715 141 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold77 SAMTools SNP 1152754 1152754 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1153718 1153718 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C249:99 scaffold77 SAMTools SNP 1153724 1153724 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C249:99 scaffold77 SAMTools SNP 1154181 1154181 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold77 SAMTools SNP 1154758 1154758 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold77 SAMTools SNP 1155640 1155640 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold77 SAMTools SNP 1156319 1156319 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold77 SAMTools SNP 1156373 1156373 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C14:17 scaffold77 SAMTools SNP 1156379 1156379 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1157359 1157359 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold77 SAMTools SNP 1157467 1157467 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 1169907 1169907 64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.075%2C0.19%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold77 SAMTools SNP 1170212 1170212 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.00041%2C1.1e-10%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C251:99 scaffold77 SAMTools SNP 1171274 1171274 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D52%2C3%2C36%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.65%2C2.1e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold77 SAMTools SNP 1171337 1171337 52.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold77 SAMTools SNP 1171520 1171520 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold77 SAMTools SNP 1171559 1171559 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.015%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1171886 1171886 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1171937 1171937 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.47%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold77 SAMTools SNP 1173737 1173737 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold77 SAMTools SNP 1187625 1187625 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 1187981 1187981 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 1223952 1223952 219 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C255%2C0:99 scaffold77 SAMTools SNP 1226132 1226132 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0065%2C0.27%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold77 SAMTools SNP 1228485 1228485 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C49%2C0%2C13%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.11%2C1.5e-09%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold77 SAMTools SNP 1230043 1230043 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C20%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0004%2C1.6e-08%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold77 SAMTools SNP 1230470 1230470 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold77 SAMTools SNP 1231010 1231010 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1231826 1231826 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C7%2C47%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1233237 1233237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold77 SAMTools SNP 1235225 1235225 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0242%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D0.2%2C0.009%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C31:34 scaffold77 SAMTools SNP 1240199 1240199 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1240232 1240232 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1244941 1244941 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold77 SAMTools SNP 1245097 1245097 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold77 SAMTools SNP 1248021 1248021 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold77 SAMTools SNP 1248468 1248468 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1248498 1248498 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1251491 1251491 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold77 SAMTools SNP 1251516 1251516 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 1255369 1255369 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold77 SAMTools SNP 1255386 1255386 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold77 SAMTools SNP 1268341 1268341 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1269902 1269902 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D21%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.04%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold77 SAMTools SNP 1269966 1269966 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C12%2C0:21 scaffold77 SAMTools SNP 1269978 1269978 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold77 SAMTools SNP 1270571 1270571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C17%2C19%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C3e-15%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1270784 1270784 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1272270 1272270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C30%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold77 SAMTools SNP 1272345 1272345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C16%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold77 SAMTools SNP 1277589 1277589 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1278025 1278025 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C15%3BMQ%3D50%3BFQ%3D-111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold77 SAMTools SNP 1280104 1280104 26.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold77 SAMTools SNP 1282229 1282229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1282669 1282669 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1283315 1283315 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold77 SAMTools SNP 1284373 1284373 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C2%3BMQ%3D27%3BFQ%3D-58%3BPV4%3D1%2C1%2C0.063%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C31%2C0:59 scaffold77 SAMTools SNP 1284421 1284421 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C24%3BMQ%3D47%3BFQ%3D12.3%3BPV4%3D1%2C1%2C0.21%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C39:42 scaffold77 SAMTools SNP 1284424 1284424 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C1%2C46%3BMQ%3D47%3BFQ%3D-83%3BPV4%3D1%2C1%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C0:99 scaffold77 SAMTools SNP 1286758 1286758 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C7%2C48%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C0.12%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1289768 1289768 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold77 SAMTools SNP 1289774 1289774 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold77 SAMTools SNP 1290670 1290670 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold77 SAMTools SNP 1294989 1294989 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C255%2C0:99 scaffold77 SAMTools SNP 1298278 1298278 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1312901 1312901 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1313126 1313126 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D568%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D350%2C0%2C204%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1314098 1314098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D825%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C768%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1314146 1314146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D909%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C361%2C537%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1314209 1314209 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D729%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C10%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C3.8e-05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C47:50 scaffold77 SAMTools SNP 1314260 1314260 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D458%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C162%2C215%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1314293 1314293 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C288%2C76%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1314855 1314855 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D419%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C63%2C64%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold77 SAMTools SNP 1315078 1315078 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold77 SAMTools SNP 1315877 1315877 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold77 SAMTools SNP 1317284 1317284 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold77 SAMTools SNP 1317373 1317373 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.058%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold77 SAMTools SNP 1318917 1318917 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold77 SAMTools SNP 1319029 1319029 226 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C7%2C7%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold77 SAMTools SNP 1319408 1319408 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold77 SAMTools SNP 1319473 1319473 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C84:41 scaffold77 SAMTools SNP 1319483 1319483 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C120:39 scaffold77 SAMTools SNP 1319731 1319731 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold77 SAMTools SNP 1320180 1320180 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1320219 1320219 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold77 SAMTools SNP 1320220 1320220 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold77 SAMTools SNP 1320848 1320848 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold77 SAMTools SNP 1320892 1320892 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold77 SAMTools SNP 1321379 1321379 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 1321435 1321435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold77 SAMTools SNP 1322200 1322200 51 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.51%2C0.06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C245:84 scaffold77 SAMTools SNP 1322513 1322513 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold77 SAMTools SNP 1323091 1323091 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold77 SAMTools SNP 1323303 1323303 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold77 SAMTools SNP 1323368 1323368 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold77 SAMTools SNP 1323565 1323565 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold77 SAMTools SNP 1323611 1323611 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold77 SAMTools SNP 1323626 1323626 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1324786 1324786 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold77 SAMTools SNP 1325073 1325073 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold77 SAMTools SNP 1325856 1325856 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C8.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C202:99 scaffold77 SAMTools SNP 1325870 1325870 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C19%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.37%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C205:99 scaffold77 SAMTools SNP 1325903 1325903 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C10%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold77 SAMTools SNP 1326143 1326143 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1327121 1327121 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.29%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold77 SAMTools SNP 1331391 1331391 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold77 SAMTools SNP 1331829 1331829 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold77 SAMTools SNP 1331888 1331888 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1332755 1332755 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1332813 1332813 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1333526 1333526 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1333964 1333964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1333982 1333982 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1334292 1334292 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1334758 1334758 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 1337146 1337146 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1337635 1337635 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold77 SAMTools SNP 1337676 1337676 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold77 SAMTools SNP 1338129 1338129 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C0.14%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold77 SAMTools SNP 1338141 1338141 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold77 SAMTools SNP 1338618 1338618 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold77 SAMTools SNP 1339602 1339602 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1339618 1339618 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold77 SAMTools SNP 1339619 1339619 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold77 SAMTools SNP 1339873 1339873 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold77 SAMTools SNP 1345431 1345431 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold77 SAMTools SNP 1345433 1345433 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C37%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold77 SAMTools SNP 1345517 1345517 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C3.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold77 SAMTools SNP 1381687 1381687 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C20%3BMQ%3D43%3BFQ%3D-3.02%3BPV4%3D0.0043%2C2.5e-09%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C27:30 scaffold77 SAMTools SNP 1397965 1397965 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C21%2C0:39 scaffold77 SAMTools SNP 1399051 1399051 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D32%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C36%2C0:67 scaffold77 SAMTools SNP 1402392 1402392 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00062%2C1.1e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C142:56 scaffold77 SAMTools SNP 1402434 1402434 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold77 SAMTools SNP 1404354 1404354 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold77 SAMTools SNP 1406981 1406981 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold77 SAMTools SNP 1407499 1407499 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold77 SAMTools SNP 1408813 1408813 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold77 SAMTools SNP 1423648 1423648 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold77 SAMTools SNP 1423990 1423990 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D810%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D455%2C3%2C250%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold77 SAMTools SNP 1424028 1424028 207 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1045%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D315%2C135%2C231%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D2.6e-25%2C1%2C1%2C1.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold77 SAMTools SNP 1436031 1436031 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold77 SAMTools SNP 1445236 1445236 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold77 SAMTools SNP 1451535 1451535 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 1464039 1464039 9.31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold77 SAMTools SNP 1464297 1464297 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold77 SAMTools SNP 1521454 1521454 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold77 SAMTools SNP 1522002 1522002 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold77 SAMTools SNP 1539549 1539549 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold77 SAMTools SNP 1540641 1540641 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1540654 1540654 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1540702 1540702 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold77 SAMTools SNP 1541309 1541309 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold77 SAMTools SNP 1541381 1541381 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C201:99 scaffold77 SAMTools SNP 1542850 1542850 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C0%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.49%2C0.33%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C201:99 scaffold77 SAMTools SNP 1542870 1542870 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 1542876 1542876 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold77 SAMTools SNP 1543008 1543008 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1543198 1543198 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1543249 1543249 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold77 SAMTools SNP 1543346 1543346 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C9%2C0:16 scaffold77 SAMTools SNP 1543814 1543814 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.4%2C0.065%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold77 SAMTools SNP 1545065 1545065 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.061%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold77 SAMTools SNP 1545074 1545074 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.065%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold77 SAMTools SNP 1545612 1545612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C5%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1545630 1545630 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C18%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1547268 1547268 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C38%2C1%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold77 SAMTools SNP 1547382 1547382 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold77 SAMTools SNP 1548973 1548973 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C42%2C1%2C36%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.62%2C2.5e-49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold77 SAMTools SNP 1552052 1552052 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold77 SAMTools SNP 1553752 1553752 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold77 SAMTools SNP 1554333 1554333 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold77 SAMTools SNP 1554471 1554471 62 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C221:95 scaffold77 SAMTools SNP 1554766 1554766 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C18%2C0:33 scaffold77 SAMTools SNP 1554808 1554808 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.52%2C6e-07%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C223:84 scaffold77 SAMTools SNP 1556155 1556155 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold77 SAMTools SNP 1558025 1558025 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1558034 1558034 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0084%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1559014 1559014 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C60:63 scaffold77 SAMTools SNP 1559050 1559050 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.13%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C118:99 scaffold77 SAMTools SNP 1560595 1560595 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C36:39 scaffold77 SAMTools SNP 1562136 1562136 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold77 SAMTools SNP 1563853 1563853 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold77 SAMTools SNP 1563883 1563883 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold77 SAMTools SNP 1567622 1567622 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold77 SAMTools SNP 1569344 1569344 39.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold77 SAMTools SNP 1576023 1576023 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.29%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold77 SAMTools SNP 1576031 1576031 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold77 SAMTools SNP 1579961 1579961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1579980 1579980 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1580738 1580738 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1582513 1582513 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold77 SAMTools SNP 1582537 1582537 62.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold77 SAMTools SNP 1584263 1584263 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1584342 1584342 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C18%2C0:33 scaffold77 SAMTools SNP 1584931 1584931 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold77 SAMTools SNP 1584985 1584985 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold77 SAMTools SNP 1585722 1585722 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1586640 1586640 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1586672 1586672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1588129 1588129 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1588144 1588144 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold77 SAMTools SNP 1588297 1588297 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C33%2C0:62 scaffold77 SAMTools SNP 1619486 1619486 114 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold770 SAMTools SNP 2638 2638 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C103%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold770 SAMTools SNP 2778 2778 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C8%3BMQ%3D48%3BFQ%3D157%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C229:99 scaffold770 SAMTools SNP 4550 4550 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C90%3BMQ%3D3%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C255%2C0:93 scaffold770 SAMTools SNP 70619 70619 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold770 SAMTools SNP 70666 70666 148 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold770 SAMTools SNP 71329 71329 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold770 SAMTools SNP 71406 71406 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold770 SAMTools SNP 73691 73691 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold770 SAMTools SNP 73763 73763 91.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold770 SAMTools SNP 73847 73847 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C3.4e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C240:79 scaffold770 SAMTools SNP 73922 73922 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold770 SAMTools SNP 74165 74165 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C27%2C15%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold770 SAMTools SNP 137148 137148 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold771 SAMTools SNP 84 84 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 92 92 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 5046 5046 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold771 SAMTools SNP 10301 10301 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.24%2C1.8e-09%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C213:71 scaffold771 SAMTools SNP 12350 12350 180 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C35%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C123%2C0:99 scaffold771 SAMTools SNP 12847 12847 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C84%2C0:99 scaffold771 SAMTools SNP 14230 14230 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C33%2C0:63 scaffold771 SAMTools SNP 15948 15948 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold771 SAMTools SNP 18944 18944 123 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C255%2C0:99 scaffold771 SAMTools SNP 19058 19058 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 19141 19141 86 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C24%2C28%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.035%2C1.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold771 SAMTools SNP 19262 19262 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C4%2C74%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 19391 19391 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C105%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 19560 19560 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C15%2C0:27 scaffold771 SAMTools SNP 21235 21235 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold771 SAMTools SNP 27630 27630 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 27664 27664 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 30585 30585 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C10%2C7%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.11%2C1%2C0.49%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 30595 30595 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D13%2C29%2C0%2C5%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D0.3%2C0.076%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold771 SAMTools SNP 30760 30760 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C17%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.82%2C0.23%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 30890 30890 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D13%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C45%2C0:74 scaffold771 SAMTools SNP 31431 31431 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C5%3BMQ%3D27%3BFQ%3D81%3BPV4%3D0.45%2C0.31%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C134:99 scaffold771 SAMTools SNP 33345 33345 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C25%3BMQ%3D39%3BFQ%3D182%3BPV4%3D0.036%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold771 SAMTools SNP 33454 33454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C56%3BMQ%3D38%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold771 SAMTools SNP 34109 34109 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold771 SAMTools SNP 34683 34683 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.0041%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold771 SAMTools SNP 34768 34768 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C77:33 scaffold771 SAMTools SNP 36291 36291 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold771 SAMTools SNP 37867 37867 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold771 SAMTools SNP 38594 38594 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C0%2C52%2C7%3BMQ%3D40%3BFQ%3D200%3BPV4%3D0.0054%2C1%2C0.0073%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C249:99 scaffold771 SAMTools SNP 40335 40335 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C0.00057%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C80:33 scaffold771 SAMTools SNP 40576 40576 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C3%3BMQ%3D44%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 40642 40642 96 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C50%2C11%2C4%3BMQ%3D46%3BFQ%3D99%3BPV4%3D1.7e-05%2C1%2C0.11%2C4.9e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold771 SAMTools SNP 40666 40666 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C49%2C1%2C13%3BMQ%3D42%3BFQ%3D65%3BPV4%3D0.68%2C1%2C0.0036%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold771 SAMTools SNP 43879 43879 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 45314 45314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold771 SAMTools SNP 46914 46914 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold771 SAMTools SNP 48907 48907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 49019 49019 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold771 SAMTools SNP 50786 50786 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 50811 50811 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 51774 51774 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C225:74 scaffold771 SAMTools SNP 51789 51789 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold771 SAMTools SNP 52618 52618 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold771 SAMTools SNP 52662 52662 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold771 SAMTools SNP 53322 53322 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold771 SAMTools SNP 53333 53333 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold771 SAMTools SNP 53513 53513 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold771 SAMTools SNP 53603 53603 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C18%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 53910 53910 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C19%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold771 SAMTools SNP 64612 64612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 64662 64662 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 66713 66713 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold771 SAMTools SNP 66734 66734 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold771 SAMTools SNP 66764 66764 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C10%2C5%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.17%2C0.14%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold771 SAMTools SNP 66803 66803 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold771 SAMTools SNP 67160 67160 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold771 SAMTools SNP 67175 67175 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold771 SAMTools SNP 67205 67205 68.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold771 SAMTools SNP 67271 67271 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold771 SAMTools SNP 67367 67367 208 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C145%2C0%2C102%3BMQ%3D50%3BFQ%3D211%3BPV4%3D3.8e-07%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold771 SAMTools SNP 67861 67861 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C184%2C7%2C115%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 67891 67891 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 67948 67948 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 67987 67987 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 68766 68766 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 68881 68881 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold771 SAMTools SNP 69708 69708 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold771 SAMTools SNP 70281 70281 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 70365 70365 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C13%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold771 SAMTools SNP 70640 70640 129 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold771 SAMTools SNP 70783 70783 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C44%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00039%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 71450 71450 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C17%2C27%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C5.1e-16%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 72476 72476 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold771 SAMTools SNP 74186 74186 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C9%2C0:16 scaffold771 SAMTools SNP 74407 74407 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold771 SAMTools SNP 74450 74450 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.3%2C0.14%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold771 SAMTools SNP 78180 78180 13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold771 SAMTools SNP 78296 78296 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold771 SAMTools SNP 80151 80151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 83799 83799 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C11%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.8e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 84160 84160 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C81%2C1%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 87611 87611 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C10%2C9%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.018%2C3.6e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold771 SAMTools SNP 87856 87856 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold771 SAMTools SNP 88229 88229 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D46%3BFQ%3D50%3BPV4%3D0.4%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C124:80 scaffold771 SAMTools SNP 88761 88761 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C5.7e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C23:26 scaffold771 SAMTools SNP 88813 88813 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold771 SAMTools SNP 89137 89137 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold771 SAMTools SNP 92806 92806 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.00017%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 92821 92821 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C58%2C7%2C7%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.39%2C0.14%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold771 SAMTools SNP 99096 99096 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.37%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 99138 99138 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold771 SAMTools SNP 99168 99168 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C116:99 scaffold771 SAMTools SNP 102250 102250 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold771 SAMTools SNP 115915 115915 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 117396 117396 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold771 SAMTools SNP 118070 118070 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C48%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold771 SAMTools SNP 122551 122551 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.14%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C80:83 scaffold771 SAMTools SNP 122611 122611 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C22%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold771 SAMTools SNP 122620 122620 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold771 SAMTools SNP 123006 123006 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold771 SAMTools SNP 123114 123114 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 123327 123327 58.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold771 SAMTools SNP 123367 123367 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold771 SAMTools SNP 123373 123373 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold771 SAMTools SNP 123379 123379 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C0.13%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C80:69 scaffold771 SAMTools SNP 123585 123585 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold771 SAMTools SNP 123630 123630 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold771 SAMTools SNP 123648 123648 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.011%2C0.003%2C1%2C4.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold771 SAMTools SNP 124095 124095 48 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.24%2C0.0014%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C242:81 scaffold771 SAMTools SNP 124111 124111 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.52%2C0.019%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold771 SAMTools SNP 124125 124125 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0022%2C0.36%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold771 SAMTools SNP 124307 124307 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold771 SAMTools SNP 124350 124350 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0151%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C33:36 scaffold771 SAMTools SNP 124853 124853 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold771 SAMTools SNP 125244 125244 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C19%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold771 SAMTools SNP 125497 125497 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold771 SAMTools SNP 125544 125544 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C13%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold771 SAMTools SNP 125883 125883 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.25%2C0.0003%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold771 SAMTools SNP 129007 129007 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C27%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C8.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold771 SAMTools SNP 131296 131296 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C6.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C99:54 scaffold771 SAMTools SNP 132851 132851 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C4.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 132953 132953 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0153%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold771 SAMTools SNP 134295 134295 130 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.22%2C2.1e-10%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold771 SAMTools SNP 134481 134481 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 135198 135198 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.67%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold771 SAMTools SNP 135234 135234 37 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C0.38%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold771 SAMTools SNP 135790 135790 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.15%2C1.1e-06%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold771 SAMTools SNP 135798 135798 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C4%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.23%2C0.27%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold771 SAMTools SNP 136022 136022 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 136199 136199 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00047%2C2.4e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 136755 136755 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C52%2C20%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C4.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 137008 137008 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 137426 137426 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C36%2C0:69 scaffold771 SAMTools SNP 137952 137952 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.26%2C0.00052%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C216:81 scaffold771 SAMTools SNP 137967 137967 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.0031%2C2.2e-08%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold771 SAMTools SNP 147484 147484 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C82%2C7%2C70%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 150207 150207 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C128:36 scaffold771 SAMTools SNP 151183 151183 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C15%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 151526 151526 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold771 SAMTools SNP 151997 151997 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C149:72 scaffold771 SAMTools SNP 153596 153596 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.41%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C138:99 scaffold771 SAMTools SNP 155216 155216 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.47%2C0.0038%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold771 SAMTools SNP 155681 155681 71 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.0089%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C77:80 scaffold771 SAMTools SNP 156387 156387 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C221:99 scaffold771 SAMTools SNP 156425 156425 151 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold771 SAMTools SNP 156430 156430 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold771 SAMTools SNP 156548 156548 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.095%2C8.6e-18%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C244:58 scaffold771 SAMTools SNP 156596 156596 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C45%2C0:87 scaffold771 SAMTools SNP 157913 157913 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C9.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C115:66 scaffold771 SAMTools SNP 157925 157925 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.49%2C1.1e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C102:69 scaffold771 SAMTools SNP 158165 158165 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C24%2C0:45 scaffold771 SAMTools SNP 160086 160086 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold771 SAMTools SNP 160109 160109 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 160178 160178 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold771 SAMTools SNP 160774 160774 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold771 SAMTools SNP 161023 161023 68.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold771 SAMTools SNP 161108 161108 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold771 SAMTools SNP 161343 161343 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold771 SAMTools SNP 161363 161363 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold771 SAMTools SNP 161379 161379 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold771 SAMTools SNP 161435 161435 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold771 SAMTools SNP 161666 161666 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold771 SAMTools SNP 161672 161672 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 162054 162054 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 162421 162421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 162928 162928 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold771 SAMTools SNP 162958 162958 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold771 SAMTools SNP 163624 163624 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold771 SAMTools SNP 163646 163646 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold771 SAMTools SNP 163703 163703 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 163885 163885 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.19%2C9.6e-07%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C243:46 scaffold771 SAMTools SNP 164038 164038 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold771 SAMTools SNP 165543 165543 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold771 SAMTools SNP 165589 165589 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.35%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold771 SAMTools SNP 166091 166091 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold771 SAMTools SNP 166187 166187 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold771 SAMTools SNP 166283 166283 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold771 SAMTools SNP 166508 166508 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 168899 168899 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold771 SAMTools SNP 168921 168921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 174209 174209 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C59%2C47%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 174375 174375 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C12%2C0:21 scaffold771 SAMTools SNP 174419 174419 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold771 SAMTools SNP 174487 174487 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold771 SAMTools SNP 175183 175183 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C59%3BMQ%3D50%3BFQ%3D-121;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C161:99 scaffold771 SAMTools SNP 175186 175186 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C40%2C27%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold771 SAMTools SNP 177035 177035 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.32%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C38:41 scaffold771 SAMTools SNP 177558 177558 36.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold771 SAMTools SNP 177562 177562 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold771 SAMTools SNP 177796 177796 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold771 SAMTools SNP 177914 177914 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C26:29 scaffold771 SAMTools SNP 179462 179462 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C199%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold771 SAMTools SNP 181238 181238 58.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold771 SAMTools SNP 195720 195720 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C7%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C3.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C251:79 scaffold771 SAMTools SNP 195861 195861 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 195895 195895 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold771 SAMTools SNP 198409 198409 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold771 SAMTools SNP 198950 198950 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold771 SAMTools SNP 267811 267811 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold771 SAMTools SNP 269413 269413 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C23%2C46%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.6e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 269425 269425 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C46%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 269726 269726 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold771 SAMTools SNP 270425 270425 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C141%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 270488 270488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C76%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold771 SAMTools SNP 271590 271590 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C83%2C2%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 271614 271614 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C9%2C77%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.013%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold771 SAMTools SNP 271737 271737 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C71%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold771 SAMTools SNP 271830 271830 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold771 SAMTools SNP 271848 271848 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold771 SAMTools SNP 272149 272149 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.00026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold771 SAMTools SNP 272194 272194 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold771 SAMTools SNP 272251 272251 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C9%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.0038%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold771 SAMTools SNP 273621 273621 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 274242 274242 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C217:99 scaffold771 SAMTools SNP 274255 274255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C0%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold771 SAMTools SNP 274937 274937 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D49%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold771 SAMTools SNP 274949 274949 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold771 SAMTools SNP 275007 275007 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0009%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C6%3BMQ%3D45%3BFQ%3D-19%3BPV4%3D0.4%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C8:11 scaffold771 SAMTools SNP 276323 276323 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C33%2C24%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.032%2C0.23%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold771 SAMTools SNP 276343 276343 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C2%2C7%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.035%2C0.082%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold771 SAMTools SNP 276368 276368 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C3%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.61%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold771 SAMTools SNP 276962 276962 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C17%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold771 SAMTools SNP 277091 277091 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C6%2C55%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 277816 277816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D677%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C232%2C44%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C0.42%2C1%2C3.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 278989 278989 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C155%2C10%2C144%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C6.8e-100%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 279595 279595 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold771 SAMTools SNP 279640 279640 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C193%2C13%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1.5e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold771 SAMTools SNP 279810 279810 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D247%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C191%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D4.2e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C192:99 scaffold771 SAMTools SNP 280271 280271 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C91%2C7%2C10%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold771 SAMTools SNP 280280 280280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 280307 280307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C38%2C52%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 280700 280700 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D370%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C8%2C117%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 280748 280748 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D160%2C11%2C131%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 281490 281490 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C42%2C78%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C7.7e-96%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 283029 283029 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C297%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 283670 283670 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C1.9e-77%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C254:90 scaffold771 SAMTools SNP 283787 283787 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C46%2C15%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 285422 285422 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C60%2C12%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 285498 285498 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C24%2C0%2C49%3BMQ%3D50%3BFQ%3D76%3BPV4%3D7.1e-20%2C8.1e-32%2C1%2C6.8e-23;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold771 SAMTools SNP 286568 286568 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C104%2C0%2C33%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.34%2C4.4e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold771 SAMTools SNP 286670 286670 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D47%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C191:72 scaffold771 SAMTools SNP 286828 286828 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C1%3BMQ%3D48%3BFQ%3D80%3BPV4%3D0.13%2C1%2C0.29%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C107:99 scaffold771 SAMTools SNP 286870 286870 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C1%3BMQ%3D47%3BFQ%3D6.99%3BPV4%3D1%2C1%2C0.32%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C33:36 scaffold771 SAMTools SNP 287042 287042 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D104%2C12%2C62%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C7.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 287805 287805 20.1 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 288085 288085 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C2%2C61%2C6%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.02%2C0.045%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 288090 288090 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C27%2C122%2C2%3BMQ%3D36%3BFQ%3D225%3BPV4%3D1.6e-06%2C1.1e-18%2C0.14%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 288805 288805 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C1%3BMQ%3D48%3BFQ%3D140%3BPV4%3D0.47%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C197:99 scaffold771 SAMTools SNP 288826 288826 137 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C6%2C1%3BMQ%3D48%3BFQ%3D140%3BPV4%3D0.47%2C0.41%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C197:99 scaffold771 SAMTools SNP 289127 289127 163 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D48%3BFQ%3D121%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C148:99 scaffold771 SAMTools SNP 289142 289142 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.2%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold771 SAMTools SNP 289232 289232 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold771 SAMTools SNP 289274 289274 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C241%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.055%2C1%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 289283 289283 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C241%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.073%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold771 SAMTools SNP 289709 289709 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold771 SAMTools SNP 289832 289832 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C30%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold771 SAMTools SNP 293010 293010 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C11%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold771 SAMTools SNP 293127 293127 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold771 SAMTools SNP 293130 293130 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold771 SAMTools SNP 293449 293449 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold771 SAMTools SNP 293600 293600 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C36%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C129%2C0:99 scaffold771 SAMTools SNP 294286 294286 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D56%2C14%2C15%2C12%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.021%2C2.8e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold771 SAMTools SNP 296198 296198 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold771 SAMTools SNP 298300 298300 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C30%2C0:57 scaffold771 SAMTools SNP 298773 298773 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C24%2C0:45 scaffold771 SAMTools SNP 298830 298830 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold771 SAMTools SNP 299267 299267 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold771 SAMTools SNP 299288 299288 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 299774 299774 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold771 SAMTools SNP 301276 301276 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold771 SAMTools SNP 301300 301300 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold771 SAMTools SNP 301371 301371 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold771 SAMTools SNP 301681 301681 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold771 SAMTools SNP 301714 301714 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 301731 301731 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C24%2C0:45 scaffold771 SAMTools SNP 302134 302134 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold771 SAMTools SNP 302152 302152 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.18%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold771 SAMTools SNP 302412 302412 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C4%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C236:99 scaffold771 SAMTools SNP 302976 302976 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold771 SAMTools SNP 303499 303499 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold771 SAMTools SNP 303545 303545 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.14%2C3.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C184:37 scaffold771 SAMTools SNP 303595 303595 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold771 SAMTools SNP 303831 303831 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold771 SAMTools SNP 304002 304002 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.37%2C1.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold771 SAMTools SNP 304110 304110 38.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold771 SAMTools SNP 304990 304990 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold771 SAMTools SNP 305257 305257 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold771 SAMTools SNP 354871 354871 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 355286 355286 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold771 SAMTools SNP 359004 359004 65.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C12%2C0:21 scaffold771 SAMTools SNP 359968 359968 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold771 SAMTools SNP 360024 360024 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold771 SAMTools SNP 360089 360089 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C0.27%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold771 SAMTools SNP 361021 361021 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.0072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold771 SAMTools SNP 361051 361051 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold771 SAMTools SNP 361084 361084 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold771 SAMTools SNP 361598 361598 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold771 SAMTools SNP 361771 361771 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold771 SAMTools SNP 361821 361821 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold771 SAMTools SNP 362063 362063 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold771 SAMTools SNP 362657 362657 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold771 SAMTools SNP 363342 363342 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold772 SAMTools SNP 18349 18349 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold772 SAMTools SNP 18367 18367 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold772 SAMTools SNP 18487 18487 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.2%2C1.6e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C193:99 scaffold772 SAMTools SNP 19820 19820 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C21%2C0:39 scaffold772 SAMTools SNP 29159 29159 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D761%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D294%2C93%2C254%2C71%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.53%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold772 SAMTools SNP 29177 29177 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D833%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D10.1%3BPV4%3D1%2C0.0025%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C37:40 scaffold772 SAMTools SNP 29280 29280 41.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D823%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold772 SAMTools SNP 29850 29850 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D196%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C189%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C255%2C0:99 scaffold772 SAMTools SNP 29922 29922 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D345%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold772 SAMTools SNP 30104 30104 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1123%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D368%2C144%2C472%2C111%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.00044%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold772 SAMTools SNP 30147 30147 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1077%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C21%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C42%2C0:81 scaffold772 SAMTools SNP 30282 30282 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D292%3BVDB%3D0.0057%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D-3.09%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C27:30 scaffold772 SAMTools SNP 32888 32888 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C77%2C7%2C16%3BMQ%3D48%3BFQ%3D192%3BPV4%3D0.16%2C0.00041%2C0.063%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold772 SAMTools SNP 33579 33579 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold772 SAMTools SNP 45483 45483 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C6%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.01%2C1%2C0.0065%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold772 SAMTools SNP 45531 45531 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C10%2C0%3BMQ%3D46%3BFQ%3D106%3BPV4%3D1.6e-06%2C1%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold772 SAMTools SNP 47073 47073 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C16%2C7%3BMQ%3D31%3BFQ%3D195%3BPV4%3D0.74%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C235:99 scaffold772 SAMTools SNP 47318 47318 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C15%3BMQ%3D33%3BFQ%3D127%3BPV4%3D1%2C0.094%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C154:99 scaffold772 SAMTools SNP 48392 48392 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D34%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold772 SAMTools SNP 48454 48454 98.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C18%2C0:33 scaffold772 SAMTools SNP 48493 48493 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold772 SAMTools SNP 63080 63080 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C27%2C0:50 scaffold772 SAMTools SNP 71218 71218 56 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C27%2C0:51 scaffold772 SAMTools SNP 71477 71477 59.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold772 SAMTools SNP 72351 72351 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 79234 79234 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D43%3BFQ%3D66%3BPV4%3D1%2C0.31%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C122:96 scaffold772 SAMTools SNP 79566 79566 13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold772 SAMTools SNP 80282 80282 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold772 SAMTools SNP 82746 82746 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold772 SAMTools SNP 82928 82928 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold772 SAMTools SNP 83628 83628 97 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D49%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C163%2C0:99 scaffold772 SAMTools SNP 85573 85573 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C33%2C0%3BMQ%3D43%3BFQ%3D-39%3BPV4%3D1%2C0.11%2C0.2%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C12%2C0:21 scaffold772 SAMTools SNP 124176 124176 16.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold772 SAMTools SNP 146126 146126 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold772 SAMTools SNP 148701 148701 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C132%2C1%2C108%3BMQ%3D41%3BFQ%3D50%3BPV4%3D1%2C7.3e-119%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold772 SAMTools SNP 148896 148896 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold772 SAMTools SNP 152748 152748 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold772 SAMTools SNP 152831 152831 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 159597 159597 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.45%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C146:99 scaffold772 SAMTools SNP 159607 159607 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.49%2C0.0067%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold772 SAMTools SNP 161884 161884 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold772 SAMTools SNP 162593 162593 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold772 SAMTools SNP 169179 169179 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C39%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D2.4e-11%2C9.8e-05%2C1%2C3.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold772 SAMTools SNP 169182 169182 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C19%2C11%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.011%2C2.7e-07%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold772 SAMTools SNP 176639 176639 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C114:36 scaffold772 SAMTools SNP 176642 176642 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold772 SAMTools SNP 176678 176678 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C210:44 scaffold772 SAMTools SNP 179172 179172 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C23%2C37%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D8.3e-05%2C8.9e-16%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold772 SAMTools SNP 179304 179304 132 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.25%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C66:69 scaffold772 SAMTools SNP 268537 268537 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold772 SAMTools SNP 268917 268917 45.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold772 SAMTools SNP 269041 269041 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold772 SAMTools SNP 269560 269560 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold772 SAMTools SNP 270591 270591 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold772 SAMTools SNP 270820 270820 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C219:57 scaffold772 SAMTools SNP 270832 270832 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.15%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C219:42 scaffold772 SAMTools SNP 270862 270862 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C251:57 scaffold772 SAMTools SNP 271145 271145 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold772 SAMTools SNP 271604 271604 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold772 SAMTools SNP 271610 271610 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.13%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C240:99 scaffold772 SAMTools SNP 271951 271951 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C33%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold772 SAMTools SNP 273533 273533 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C26%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold772 SAMTools SNP 274066 274066 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C31%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C253:99 scaffold772 SAMTools SNP 274125 274125 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold772 SAMTools SNP 276591 276591 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C2%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C96%2C0:99 scaffold772 SAMTools SNP 277073 277073 39.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold772 SAMTools SNP 282715 282715 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 283379 283379 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 337459 337459 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold772 SAMTools SNP 380065 380065 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 380070 380070 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold772 SAMTools SNP 406418 406418 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold772 SAMTools SNP 406774 406774 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold772 SAMTools SNP 406831 406831 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold773 SAMTools SNP 136298 136298 10.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C12%2C0:17 scaffold773 SAMTools SNP 136415 136415 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C48%2C0:93 scaffold773 SAMTools SNP 136418 136418 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C51%2C0:99 scaffold773 SAMTools SNP 136645 136645 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C52%2C17%3BMQ%3D50%3BFQ%3D-132%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold773 SAMTools SNP 136654 136654 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C32%2C19%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.0014%2C0.00042%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold773 SAMTools SNP 136724 136724 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C68%2C0%2C19%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.9e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold773 SAMTools SNP 136731 136731 51 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C33%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C105%2C0:99 scaffold773 SAMTools SNP 136873 136873 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.33%2C4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C243:99 scaffold773 SAMTools SNP 137121 137121 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold773 SAMTools SNP 137357 137357 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold773 SAMTools SNP 137459 137459 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold773 SAMTools SNP 138068 138068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C1%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold773 SAMTools SNP 139011 139011 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold773 SAMTools SNP 139038 139038 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold773 SAMTools SNP 139081 139081 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold773 SAMTools SNP 139165 139165 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold773 SAMTools SNP 139306 139306 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold773 SAMTools SNP 139334 139334 193 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:226%2C27%2C0:51 scaffold773 SAMTools SNP 140274 140274 31.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold773 SAMTools SNP 144023 144023 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold773 SAMTools SNP 153444 153444 6.79 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold773 SAMTools SNP 153625 153625 29.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold773 SAMTools SNP 197185 197185 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold773 SAMTools SNP 197189 197189 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.14%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold773 SAMTools SNP 197190 197190 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C239:99 scaffold773 SAMTools SNP 197730 197730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C54%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold773 SAMTools SNP 197844 197844 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold773 SAMTools SNP 198917 198917 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold773 SAMTools SNP 199295 199295 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold773 SAMTools SNP 199695 199695 35.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold773 SAMTools SNP 199794 199794 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C21%2C0:39 scaffold773 SAMTools SNP 210794 210794 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold773 SAMTools SNP 211952 211952 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold773 SAMTools SNP 220822 220822 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold773 SAMTools SNP 221047 221047 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold773 SAMTools SNP 221117 221117 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold773 SAMTools SNP 221141 221141 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0058%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold773 SAMTools SNP 221725 221725 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold773 SAMTools SNP 221996 221996 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold773 SAMTools SNP 222035 222035 186 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C21%2C0:39 scaffold773 SAMTools SNP 222055 222055 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.49%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold773 SAMTools SNP 222732 222732 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold773 SAMTools SNP 263996 263996 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold773 SAMTools SNP 283803 283803 42.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C15%2C0:27 scaffold773 SAMTools SNP 283881 283881 23.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C15%2C0:26 scaffold775 SAMTools SNP 23536 23536 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 23565 23565 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 23623 23623 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 23638 23638 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 57899 57899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 62047 62047 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 64121 64121 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 64143 64143 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 67109 67109 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C30%2C0:57 scaffold775 SAMTools SNP 67496 67496 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C5%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0022%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold775 SAMTools SNP 67944 67944 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold775 SAMTools SNP 67992 67992 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.021%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold775 SAMTools SNP 69542 69542 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.14%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C227:99 scaffold775 SAMTools SNP 71160 71160 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold775 SAMTools SNP 72370 72370 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold775 SAMTools SNP 72445 72445 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold775 SAMTools SNP 73281 73281 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.52%2C0.16%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C182:99 scaffold775 SAMTools SNP 73330 73330 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold775 SAMTools SNP 76284 76284 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold775 SAMTools SNP 76299 76299 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C6%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.15%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold775 SAMTools SNP 76338 76338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold775 SAMTools SNP 76618 76618 33.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C12%2C0:21 scaffold775 SAMTools SNP 80034 80034 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold775 SAMTools SNP 81180 81180 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold775 SAMTools SNP 82693 82693 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold775 SAMTools SNP 83222 83222 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.11%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C100:49 scaffold775 SAMTools SNP 83240 83240 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold775 SAMTools SNP 83394 83394 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold775 SAMTools SNP 83591 83591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C27%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.1e-09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold775 SAMTools SNP 83627 83627 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C10%2C29%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0097%2C0.18%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold775 SAMTools SNP 84549 84549 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold775 SAMTools SNP 86919 86919 97 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C48%2C0%2C119%2C25%2C116:93 scaffold775 SAMTools SNP 88725 88725 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C72%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.1e-98%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C233:48 scaffold775 SAMTools SNP 88821 88821 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold775 SAMTools SNP 89422 89422 159 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.27%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C240:99 scaffold775 SAMTools SNP 89476 89476 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C66%2C0:99 scaffold775 SAMTools SNP 89557 89557 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C4%2C10%2C4%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.19%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold775 SAMTools SNP 90515 90515 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C37%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold775 SAMTools SNP 90641 90641 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C33%2C0:63 scaffold775 SAMTools SNP 90656 90656 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold775 SAMTools SNP 91832 91832 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold775 SAMTools SNP 91955 91955 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-6.19%3BPV4%3D1%2C0.047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C22:25 scaffold775 SAMTools SNP 92030 92030 20 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C14%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.14%2C1.6e-13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold775 SAMTools SNP 92312 92312 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold775 SAMTools SNP 92323 92323 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold775 SAMTools SNP 92491 92491 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold775 SAMTools SNP 92774 92774 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C6%2C13%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C3.7e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold775 SAMTools SNP 93654 93654 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold775 SAMTools SNP 93799 93799 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C36%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold775 SAMTools SNP 93806 93806 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C11%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold775 SAMTools SNP 94486 94486 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1.4e-16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold775 SAMTools SNP 94618 94618 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C13%2C1%2C12%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1.5e-06%2C8e-28%2C1%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold775 SAMTools SNP 94984 94984 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.68%2C3.4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold775 SAMTools SNP 97133 97133 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 97690 97690 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold775 SAMTools SNP 101006 101006 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold775 SAMTools SNP 101715 101715 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 107687 107687 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold775 SAMTools SNP 110160 110160 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold775 SAMTools SNP 110205 110205 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold775 SAMTools SNP 110891 110891 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold775 SAMTools SNP 112360 112360 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold775 SAMTools SNP 118982 118982 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold775 SAMTools SNP 123055 123055 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold775 SAMTools SNP 125923 125923 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold775 SAMTools SNP 126709 126709 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold775 SAMTools SNP 126799 126799 85.5 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C12%2C0:21 scaffold775 SAMTools SNP 129682 129682 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold775 SAMTools SNP 129971 129971 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.015%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold775 SAMTools SNP 129994 129994 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold775 SAMTools SNP 132283 132283 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold78 SAMTools SNP 581 581 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold78 SAMTools SNP 608 608 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold78 SAMTools SNP 22550 22550 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold78 SAMTools SNP 23753 23753 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold78 SAMTools SNP 26786 26786 56.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C12%2C0:21 scaffold78 SAMTools SNP 30374 30374 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold78 SAMTools SNP 30771 30771 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold78 SAMTools SNP 97477 97477 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C41%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C123%2C0:99 scaffold78 SAMTools SNP 98463 98463 63 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C81%2C0:99 scaffold78 SAMTools SNP 98544 98544 16.9 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold78 SAMTools SNP 106372 106372 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold78 SAMTools SNP 106461 106461 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold78 SAMTools SNP 106496 106496 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold78 SAMTools SNP 107605 107605 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C48%2C0:93 scaffold78 SAMTools SNP 127609 127609 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold78 SAMTools SNP 128025 128025 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C21%2C0:39 scaffold78 SAMTools SNP 128125 128125 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.002%2C8.6e-06%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C254:99 scaffold78 SAMTools SNP 129920 129920 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.12%2C0.042%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold78 SAMTools SNP 130364 130364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold78 SAMTools SNP 130383 130383 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.073%2C0.00021%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold78 SAMTools SNP 130878 130878 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold78 SAMTools SNP 132808 132808 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold78 SAMTools SNP 133167 133167 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C14%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold78 SAMTools SNP 133604 133604 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold78 SAMTools SNP 134354 134354 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold78 SAMTools SNP 158483 158483 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold78 SAMTools SNP 158641 158641 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold78 SAMTools SNP 160882 160882 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 36269 36269 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold780 SAMTools SNP 37079 37079 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold780 SAMTools SNP 37837 37837 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C2.8e-11%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C129:42 scaffold780 SAMTools SNP 38251 38251 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 38277 38277 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold780 SAMTools SNP 38335 38335 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 42179 42179 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.007%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C223:28 scaffold780 SAMTools SNP 42197 42197 163 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.54%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold780 SAMTools SNP 42625 42625 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold780 SAMTools SNP 42631 42631 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 48105 48105 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C90%2C0:99 scaffold780 SAMTools SNP 48183 48183 87 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C66%2C0%2C99%2C31%2C96:99 scaffold780 SAMTools SNP 48253 48253 54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C6%2C33%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.007%2C5.5e-68%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold780 SAMTools SNP 48786 48786 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C0%2C5%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold780 SAMTools SNP 49059 49059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C17%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold780 SAMTools SNP 49072 49072 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold780 SAMTools SNP 49105 49105 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold780 SAMTools SNP 49132 49132 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold780 SAMTools SNP 49150 49150 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold780 SAMTools SNP 49174 49174 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 49699 49699 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 50255 50255 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 50279 50279 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 50879 50879 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 51365 51365 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold780 SAMTools SNP 51398 51398 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold780 SAMTools SNP 51497 51497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold780 SAMTools SNP 52002 52002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold780 SAMTools SNP 52029 52029 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 52050 52050 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold780 SAMTools SNP 53801 53801 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold780 SAMTools SNP 53831 53831 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold780 SAMTools SNP 53864 53864 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C30%2C3%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold780 SAMTools SNP 53873 53873 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.17%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold780 SAMTools SNP 54173 54173 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold780 SAMTools SNP 54281 54281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold780 SAMTools SNP 54302 54302 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C21%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold780 SAMTools SNP 54703 54703 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold780 SAMTools SNP 54718 54718 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 54814 54814 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold780 SAMTools SNP 55168 55168 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C8%2C7%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C89:92 scaffold780 SAMTools SNP 55545 55545 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold780 SAMTools SNP 55720 55720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold780 SAMTools SNP 55759 55759 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.4%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold780 SAMTools SNP 55947 55947 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold780 SAMTools SNP 56369 56369 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C24%2C0:45 scaffold780 SAMTools SNP 56980 56980 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C5%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold780 SAMTools SNP 57009 57009 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C24%2C0:45 scaffold780 SAMTools SNP 60324 60324 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C50%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold780 SAMTools SNP 60357 60357 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold780 SAMTools SNP 60557 60557 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C22%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold780 SAMTools SNP 60565 60565 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C13%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 60833 60833 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C53%2C1%2C13%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold780 SAMTools SNP 60841 60841 107 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C54%2C0%2C13%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold780 SAMTools SNP 88959 88959 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold780 SAMTools SNP 89038 89038 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold780 SAMTools SNP 89927 89927 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold780 SAMTools SNP 90328 90328 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold780 SAMTools SNP 96008 96008 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 96015 96015 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 96826 96826 35 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C30%2C0:56 scaffold780 SAMTools SNP 96994 96994 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold780 SAMTools SNP 97222 97222 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00047%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C85:31 scaffold780 SAMTools SNP 97304 97304 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.5e-07%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C121:28 scaffold780 SAMTools SNP 97340 97340 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C24%2C0:45 scaffold780 SAMTools SNP 97609 97609 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.52%2C0.038%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C223:99 scaffold780 SAMTools SNP 102263 102263 174 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C30%2C0%2C199%2C12%2C196:57 scaffold780 SAMTools SNP 102347 102347 20.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold780 SAMTools SNP 103024 103024 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold780 SAMTools SNP 103078 103078 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C255%2C0:99 scaffold780 SAMTools SNP 103195 103195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C42%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold780 SAMTools SNP 103557 103557 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C67%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold780 SAMTools SNP 103576 103576 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold780 SAMTools SNP 141833 141833 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 141848 141848 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold780 SAMTools SNP 142283 142283 113 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.13%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C129:99 scaffold780 SAMTools SNP 142318 142318 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C30%2C0:57 scaffold780 SAMTools SNP 142363 142363 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold780 SAMTools SNP 143245 143245 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold780 SAMTools SNP 143256 143256 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.4%2C0.2%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C174:99 scaffold780 SAMTools SNP 144025 144025 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold780 SAMTools SNP 144028 144028 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold780 SAMTools SNP 144888 144888 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold780 SAMTools SNP 144995 144995 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C69%2C0:99 scaffold780 SAMTools SNP 152242 152242 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C199:46 scaffold780 SAMTools SNP 152503 152503 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C228:46 scaffold780 SAMTools SNP 152565 152565 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold780 SAMTools SNP 152602 152602 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold780 SAMTools SNP 154894 154894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold780 SAMTools SNP 154926 154926 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 155344 155344 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 155369 155369 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 155738 155738 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold780 SAMTools SNP 155778 155778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 156133 156133 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 156292 156292 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold780 SAMTools SNP 156324 156324 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 156358 156358 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold780 SAMTools SNP 156495 156495 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold780 SAMTools SNP 158359 158359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold780 SAMTools SNP 158374 158374 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold780 SAMTools SNP 159585 159585 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold780 SAMTools SNP 159612 159612 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 171322 171322 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold780 SAMTools SNP 195048 195048 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold780 SAMTools SNP 195461 195461 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 195663 195663 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 205875 205875 11.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C19%3BMQ%3D42%3BFQ%3D-40%3BPV4%3D0.095%2C1.1e-17%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C13%2C0:19 scaffold780 SAMTools SNP 210146 210146 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 210485 210485 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 210573 210573 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold780 SAMTools SNP 210594 210594 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold780 SAMTools SNP 210751 210751 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold780 SAMTools SNP 211640 211640 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold780 SAMTools SNP 211906 211906 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C9%2C0:16 scaffold780 SAMTools SNP 211963 211963 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold780 SAMTools SNP 212302 212302 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold780 SAMTools SNP 213644 213644 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 213676 213676 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold780 SAMTools SNP 221319 221319 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold780 SAMTools SNP 222596 222596 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.036%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold780 SAMTools SNP 223125 223125 108 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold780 SAMTools SNP 223187 223187 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold780 SAMTools SNP 223955 223955 75 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold780 SAMTools SNP 224007 224007 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 225890 225890 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold780 SAMTools SNP 241016 241016 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0083%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold780 SAMTools SNP 241020 241020 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.011%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold780 SAMTools SNP 242170 242170 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C3e-10%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C154:49 scaffold780 SAMTools SNP 242677 242677 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 242876 242876 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold780 SAMTools SNP 244534 244534 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 244549 244549 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C5%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.14%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 244942 244942 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.4%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold780 SAMTools SNP 245503 245503 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold780 SAMTools SNP 245777 245777 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C15%2C0:27 scaffold780 SAMTools SNP 245850 245850 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C9%2C0:16 scaffold780 SAMTools SNP 246247 246247 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold780 SAMTools SNP 247377 247377 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold780 SAMTools SNP 254508 254508 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 254725 254725 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C144%2C0:99 scaffold780 SAMTools SNP 254953 254953 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold780 SAMTools SNP 254959 254959 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold780 SAMTools SNP 255366 255366 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C182:31 scaffold780 SAMTools SNP 257216 257216 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 257247 257247 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 258689 258689 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 258725 258725 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C203:99 scaffold780 SAMTools SNP 262433 262433 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D40%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C174:60 scaffold780 SAMTools SNP 262835 262835 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C208:99 scaffold780 SAMTools SNP 262916 262916 89.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C5%2C0:9 scaffold780 SAMTools SNP 263569 263569 159 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C63:63 scaffold780 SAMTools SNP 263663 263663 150 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.51%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C248:99 scaffold780 SAMTools SNP 264488 264488 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold780 SAMTools SNP 265473 265473 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 265491 265491 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold780 SAMTools SNP 265537 265537 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold780 SAMTools SNP 265539 265539 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold780 SAMTools SNP 265954 265954 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold780 SAMTools SNP 267536 267536 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold780 SAMTools SNP 267553 267553 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.29%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C21:24 scaffold780 SAMTools SNP 267641 267641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C9%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold780 SAMTools SNP 267855 267855 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 268868 268868 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold780 SAMTools SNP 268880 268880 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold780 SAMTools SNP 286359 286359 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.057%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C199:99 scaffold780 SAMTools SNP 286458 286458 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 288386 288386 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold780 SAMTools SNP 288435 288435 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold780 SAMTools SNP 289525 289525 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 289533 289533 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold780 SAMTools SNP 289569 289569 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold780 SAMTools SNP 290237 290237 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold780 SAMTools SNP 290461 290461 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C11%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C0.21%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold780 SAMTools SNP 290536 290536 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold780 SAMTools SNP 290849 290849 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold780 SAMTools SNP 290906 290906 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold780 SAMTools SNP 290930 290930 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold780 SAMTools SNP 290984 290984 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 290993 290993 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 291362 291362 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold780 SAMTools SNP 291392 291392 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold780 SAMTools SNP 291410 291410 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 291502 291502 114 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C18%2C0:33 scaffold780 SAMTools SNP 291728 291728 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold780 SAMTools SNP 292328 292328 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C238:40 scaffold780 SAMTools SNP 294132 294132 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold780 SAMTools SNP 294555 294555 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C38%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00031%2C3e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C231:72 scaffold780 SAMTools SNP 294825 294825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C2%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold780 SAMTools SNP 294962 294962 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 295074 295074 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C29%2C22%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1.2e-05%2C4.2e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold780 SAMTools SNP 295130 295130 153 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C24%2C79%2C13%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.0043%2C3.9e-87%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold780 SAMTools SNP 295209 295209 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C255%2C0:99 scaffold780 SAMTools SNP 295299 295299 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C6%2C59%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.13%2C1.7e-71%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold780 SAMTools SNP 295491 295491 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C57%2C0:99 scaffold780 SAMTools SNP 296577 296577 8.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold780 SAMTools SNP 296979 296979 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C160%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 297245 297245 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold780 SAMTools SNP 297251 297251 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold780 SAMTools SNP 297356 297356 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C19%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold780 SAMTools SNP 297700 297700 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C76%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.036%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C130:99 scaffold780 SAMTools SNP 297778 297778 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C2.3e-08%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold780 SAMTools SNP 297817 297817 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.0025%2C1.5e-05%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold780 SAMTools SNP 298094 298094 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C10%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.11%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold780 SAMTools SNP 298581 298581 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C3%2C6%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.69%2C5.4e-07%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold780 SAMTools SNP 358433 358433 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C23%2C42%2C20%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.28%2C2.2e-83%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold780 SAMTools SNP 384886 384886 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C42%2C0:81 scaffold780 SAMTools SNP 385024 385024 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C7.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C149:99 scaffold780 SAMTools SNP 385231 385231 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold780 SAMTools SNP 385318 385318 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C24%2C0:45 scaffold780 SAMTools SNP 385819 385819 97.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C15%2C0:27 scaffold780 SAMTools SNP 391908 391908 38.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold780 SAMTools SNP 392080 392080 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold780 SAMTools SNP 393234 393234 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 394196 394196 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold780 SAMTools SNP 395117 395117 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C6%2C1%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.18%2C0.04%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold780 SAMTools SNP 396133 396133 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold780 SAMTools SNP 397677 397677 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold780 SAMTools SNP 397883 397883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C22%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold780 SAMTools SNP 398530 398530 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 398932 398932 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold780 SAMTools SNP 398947 398947 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold780 SAMTools SNP 399832 399832 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D-3.54%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C26:29 scaffold780 SAMTools SNP 400479 400479 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C64:67 scaffold780 SAMTools SNP 400488 400488 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.27%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold780 SAMTools SNP 401835 401835 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C99:99 scaffold780 SAMTools SNP 402550 402550 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C11%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.26%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold780 SAMTools SNP 404827 404827 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C238:99 scaffold780 SAMTools SNP 404887 404887 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 404897 404897 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold780 SAMTools SNP 405738 405738 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C9%2C0:16 scaffold780 SAMTools SNP 410511 410511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 410550 410550 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C134:99 scaffold780 SAMTools SNP 410573 410573 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold780 SAMTools SNP 410598 410598 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold780 SAMTools SNP 412128 412128 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold780 SAMTools SNP 415049 415049 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C179%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 415073 415073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C187%2C2%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 415437 415437 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C177%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 416540 416540 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C0%2C14%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold780 SAMTools SNP 417980 417980 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C207:69 scaffold780 SAMTools SNP 418052 418052 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 418061 418061 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold780 SAMTools SNP 418303 418303 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold780 SAMTools SNP 418714 418714 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 420204 420204 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.037%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C83:37 scaffold780 SAMTools SNP 421241 421241 31.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold780 SAMTools SNP 421630 421630 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 422496 422496 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold780 SAMTools SNP 422553 422553 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold780 SAMTools SNP 423512 423512 23.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold780 SAMTools SNP 425284 425284 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C90%2C0:99 scaffold780 SAMTools SNP 431163 431163 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold780 SAMTools SNP 431167 431167 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 433737 433737 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C9%2C0:16 scaffold780 SAMTools SNP 433759 433759 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold780 SAMTools SNP 434219 434219 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 439661 439661 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 447674 447674 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C24%2C0:45 scaffold780 SAMTools SNP 448301 448301 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 448322 448322 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 449590 449590 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold780 SAMTools SNP 458932 458932 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.43%2C0.041%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C183:47 scaffold780 SAMTools SNP 459136 459136 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 459286 459286 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold780 SAMTools SNP 459865 459865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 460837 460837 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 465003 465003 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold780 SAMTools SNP 465163 465163 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 465711 465711 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold780 SAMTools SNP 469110 469110 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 474944 474944 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold780 SAMTools SNP 474947 474947 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 474974 474974 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 475635 475635 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold780 SAMTools SNP 475645 475645 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold780 SAMTools SNP 478243 478243 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 482198 482198 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold780 SAMTools SNP 514566 514566 31.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold780 SAMTools SNP 516000 516000 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C4%2C48%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.69%2C2.3e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold780 SAMTools SNP 517244 517244 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 517289 517289 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C10%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 583433 583433 19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold780 SAMTools SNP 583514 583514 50.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold780 SAMTools SNP 584598 584598 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.45%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold780 SAMTools SNP 584790 584790 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C14%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C138%2C0:99 scaffold780 SAMTools SNP 585471 585471 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold780 SAMTools SNP 657386 657386 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold780 SAMTools SNP 693376 693376 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.18%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C254:99 scaffold780 SAMTools SNP 693431 693431 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 696582 696582 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold780 SAMTools SNP 696672 696672 35.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold780 SAMTools SNP 696735 696735 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 696756 696756 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold780 SAMTools SNP 697144 697144 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 697241 697241 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C132:34 scaffold780 SAMTools SNP 697892 697892 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold780 SAMTools SNP 697921 697921 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C169:74 scaffold780 SAMTools SNP 698101 698101 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 701511 701511 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1896%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D189%2C767%2C139%2C768%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C2.5e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 701541 701541 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7999%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D283%2C4087%2C239%2C3378%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 701661 701661 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3889%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2814%2C872%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.24%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold780 SAMTools SNP 701673 701673 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold780 SAMTools SNP 702158 702158 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7356%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D956%2C2518%2C1007%2C2804%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 702912 702912 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D302%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C196%2C0%2C100%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.18%2C0.45%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold780 SAMTools SNP 702913 702913 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.54%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold780 SAMTools SNP 702914 702914 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.054%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold780 SAMTools SNP 705225 705225 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold780 SAMTools SNP 708103 708103 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 708114 708114 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold780 SAMTools SNP 708791 708791 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.37%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 709595 709595 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C4%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold780 SAMTools SNP 710415 710415 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.048%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 737048 737048 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold780 SAMTools SNP 737086 737086 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold780 SAMTools SNP 737108 737108 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold780 SAMTools SNP 737402 737402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold780 SAMTools SNP 737435 737435 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold780 SAMTools SNP 751834 751834 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold780 SAMTools SNP 752337 752337 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D1%2C6.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C48:43 scaffold780 SAMTools SNP 773927 773927 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold780 SAMTools SNP 806386 806386 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold780 SAMTools SNP 806704 806704 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 806951 806951 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold780 SAMTools SNP 807023 807023 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 807058 807058 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C15%2C0:27 scaffold780 SAMTools SNP 807071 807071 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C201:72 scaffold780 SAMTools SNP 807533 807533 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C180:74 scaffold780 SAMTools SNP 807649 807649 92.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold780 SAMTools SNP 807917 807917 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 808489 808489 6.79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold780 SAMTools SNP 808546 808546 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C170:72 scaffold780 SAMTools SNP 808594 808594 211 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold780 SAMTools SNP 809256 809256 131 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.28%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold780 SAMTools SNP 809399 809399 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 809400 809400 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 810811 810811 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C139:99 scaffold780 SAMTools SNP 810848 810848 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold780 SAMTools SNP 810865 810865 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold780 SAMTools SNP 811182 811182 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C145:99 scaffold780 SAMTools SNP 811197 811197 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold780 SAMTools SNP 811224 811224 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.28%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold780 SAMTools SNP 812881 812881 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 813073 813073 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 848385 848385 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold780 SAMTools SNP 848397 848397 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold780 SAMTools SNP 849419 849419 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold780 SAMTools SNP 849548 849548 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold780 SAMTools SNP 878200 878200 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 929448 929448 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C99%2C15%2C3%3BMQ%3D49%3BFQ%3D70%3BPV4%3D1.3e-07%2C1%2C1%2C1.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold780 SAMTools SNP 929589 929589 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C11%2C2%2C64%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1.7e-32%2C1%2C1%2C2.5e-29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold780 SAMTools SNP 929632 929632 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C34%2C7%2C4%3BMQ%3D44%3BFQ%3D13.2%3BPV4%3D1%2C0.013%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold780 SAMTools SNP 929915 929915 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C2%3BMQ%3D43%3BFQ%3D130%3BPV4%3D0.31%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold780 SAMTools SNP 934742 934742 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold780 SAMTools SNP 935257 935257 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.52%2C1.1e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C193:30 scaffold780 SAMTools SNP 936006 936006 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold780 SAMTools SNP 936726 936726 14.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold780 SAMTools SNP 943541 943541 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 943666 943666 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold780 SAMTools SNP 944508 944508 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold780 SAMTools SNP 955631 955631 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold780 SAMTools SNP 956304 956304 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold780 SAMTools SNP 958527 958527 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold780 SAMTools SNP 959491 959491 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold780 SAMTools SNP 960409 960409 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 15311 15311 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold782 SAMTools SNP 16068 16068 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold782 SAMTools SNP 16082 16082 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C30%2C0:57 scaffold782 SAMTools SNP 16612 16612 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold782 SAMTools SNP 24613 24613 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D41%3BFQ%3D10.4%3BPV4%3D1%2C1%2C0.32%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C112:39 scaffold782 SAMTools SNP 26220 26220 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold782 SAMTools SNP 28671 28671 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold782 SAMTools SNP 28708 28708 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D45%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C45%2C0:87 scaffold782 SAMTools SNP 28725 28725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D46%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold782 SAMTools SNP 28926 28926 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C33%2C0:63 scaffold782 SAMTools SNP 29696 29696 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold782 SAMTools SNP 29706 29706 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold782 SAMTools SNP 30042 30042 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold782 SAMTools SNP 30387 30387 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold782 SAMTools SNP 30441 30441 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold782 SAMTools SNP 31344 31344 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D47%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold782 SAMTools SNP 31366 31366 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C24%3BMQ%3D46%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold782 SAMTools SNP 31629 31629 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold782 SAMTools SNP 37241 37241 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 38167 38167 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 38925 38925 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold782 SAMTools SNP 39403 39403 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold782 SAMTools SNP 40420 40420 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C7.3e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold782 SAMTools SNP 41409 41409 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 41549 41549 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold782 SAMTools SNP 41916 41916 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold782 SAMTools SNP 50012 50012 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.43%2C1.6e-07%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C227:99 scaffold782 SAMTools SNP 50234 50234 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold782 SAMTools SNP 50638 50638 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.2%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold782 SAMTools SNP 51030 51030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 51826 51826 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold782 SAMTools SNP 51851 51851 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C2%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.084%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold782 SAMTools SNP 51910 51910 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 52969 52969 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.085%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold782 SAMTools SNP 53440 53440 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.56%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold782 SAMTools SNP 56222 56222 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C7.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold782 SAMTools SNP 56239 56239 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold782 SAMTools SNP 56555 56555 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.4%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold782 SAMTools SNP 57673 57673 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 58664 58664 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold782 SAMTools SNP 59501 59501 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C1%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold782 SAMTools SNP 59753 59753 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold782 SAMTools SNP 60212 60212 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold782 SAMTools SNP 60232 60232 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.4%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C238:58 scaffold782 SAMTools SNP 60233 60233 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold782 SAMTools SNP 60398 60398 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C2%2C10%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.28%2C5.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold782 SAMTools SNP 62836 62836 34.8 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold782 SAMTools SNP 69211 69211 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 69228 69228 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold782 SAMTools SNP 69747 69747 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold782 SAMTools SNP 70660 70660 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold782 SAMTools SNP 70735 70735 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C83:39 scaffold782 SAMTools SNP 72292 72292 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold782 SAMTools SNP 72304 72304 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold782 SAMTools SNP 73373 73373 92 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.57%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold782 SAMTools SNP 74110 74110 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold782 SAMTools SNP 74520 74520 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold782 SAMTools SNP 93728 93728 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C12%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold782 SAMTools SNP 94661 94661 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 95046 95046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold782 SAMTools SNP 95768 95768 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold782 SAMTools SNP 95814 95814 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.02%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C230:99 scaffold782 SAMTools SNP 96518 96518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold782 SAMTools SNP 100066 100066 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C4e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C229:39 scaffold782 SAMTools SNP 100111 100111 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C1%2C10%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.014%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold782 SAMTools SNP 102557 102557 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold782 SAMTools SNP 102736 102736 7.39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold782 SAMTools SNP 104581 104581 23.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C18%2C0:32 scaffold782 SAMTools SNP 106209 106209 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C205:63 scaffold782 SAMTools SNP 106225 106225 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C111:99 scaffold782 SAMTools SNP 106663 106663 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold782 SAMTools SNP 107007 107007 223 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C4%2C9%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold782 SAMTools SNP 107335 107335 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold782 SAMTools SNP 107356 107356 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold782 SAMTools SNP 107437 107437 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold782 SAMTools SNP 107443 107443 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold782 SAMTools SNP 107456 107456 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.23%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold782 SAMTools SNP 107793 107793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold782 SAMTools SNP 108294 108294 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold782 SAMTools SNP 108318 108318 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold782 SAMTools SNP 108321 108321 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C0.46%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C242:99 scaffold782 SAMTools SNP 108761 108761 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold782 SAMTools SNP 109491 109491 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold782 SAMTools SNP 113817 113817 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C24%2C0:45 scaffold782 SAMTools SNP 113857 113857 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold782 SAMTools SNP 114603 114603 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C184:99 scaffold782 SAMTools SNP 114655 114655 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold782 SAMTools SNP 115225 115225 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold782 SAMTools SNP 115228 115228 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold782 SAMTools SNP 115239 115239 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.0022%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold782 SAMTools SNP 117818 117818 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold782 SAMTools SNP 125705 125705 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold782 SAMTools SNP 125714 125714 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold782 SAMTools SNP 126221 126221 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.061%2C0.0063%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C171:99 scaffold782 SAMTools SNP 126261 126261 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.24%2C4.9e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C253:99 scaffold782 SAMTools SNP 134069 134069 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 134258 134258 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold782 SAMTools SNP 134844 134844 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 138261 138261 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold782 SAMTools SNP 138262 138262 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold782 SAMTools SNP 138265 138265 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold782 SAMTools SNP 139931 139931 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold782 SAMTools SNP 140150 140150 184 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C24%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C93%2C0:99 scaffold782 SAMTools SNP 154420 154420 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold782 SAMTools SNP 154449 154449 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold782 SAMTools SNP 154460 154460 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.062%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold782 SAMTools SNP 156299 156299 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.14%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold782 SAMTools SNP 156972 156972 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.12%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold782 SAMTools SNP 156975 156975 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C1%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold782 SAMTools SNP 157003 157003 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C14%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 157081 157081 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C17%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C245:99 scaffold782 SAMTools SNP 157399 157399 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold782 SAMTools SNP 159711 159711 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0084%2C2.3e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold782 SAMTools SNP 160439 160439 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 161294 161294 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C9%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold782 SAMTools SNP 161709 161709 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 165766 165766 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 166823 166823 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 167113 167113 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 169306 169306 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold782 SAMTools SNP 187086 187086 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C42%3BMQ%3D50%3BFQ%3D-152%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C125%2C0:99 scaffold782 SAMTools SNP 187108 187108 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C22%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D1%2C0.45%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold782 SAMTools SNP 187132 187132 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C24%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold782 SAMTools SNP 190508 190508 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.083%2C1.4e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C116:41 scaffold782 SAMTools SNP 190520 190520 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.45%2C3.2e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C214:99 scaffold782 SAMTools SNP 191674 191674 75.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold782 SAMTools SNP 191701 191701 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C3%3BMQ%3D48%3BFQ%3D-17.1%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C10:13 scaffold782 SAMTools SNP 192740 192740 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C50%2C9%2C9%3BMQ%3D49%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold782 SAMTools SNP 192751 192751 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C16%3BMQ%3D48%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold782 SAMTools SNP 193516 193516 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C59%2C0%2C35%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold782 SAMTools SNP 193558 193558 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C61%2C1%2C20%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold782 SAMTools SNP 193757 193757 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C15%2C13%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.18%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C50:53 scaffold782 SAMTools SNP 194142 194142 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold782 SAMTools SNP 194623 194623 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C58%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold782 SAMTools SNP 194650 194650 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C36%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold782 SAMTools SNP 194662 194662 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C222:62 scaffold782 SAMTools SNP 194989 194989 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C2%2C0%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C0.37%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold782 SAMTools SNP 194999 194999 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C0%2C4%3BMQ%3D49%3BFQ%3D38%3BPV4%3D2.4e-05%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C223:68 scaffold782 SAMTools SNP 195011 195011 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C29%2C0%3BMQ%3D49%3BFQ%3D38%3BPV4%3D2.4e-05%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C65:68 scaffold782 SAMTools SNP 195056 195056 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C41%2C0%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.44%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold782 SAMTools SNP 195555 195555 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C31%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold782 SAMTools SNP 195576 195576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C33%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 195921 195921 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C6%2C44%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold782 SAMTools SNP 196035 196035 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C37%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold782 SAMTools SNP 196044 196044 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.03%2C0.2%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 196371 196371 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C48%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 197152 197152 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C11%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.38%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold782 SAMTools SNP 197161 197161 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold782 SAMTools SNP 197184 197184 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold782 SAMTools SNP 197852 197852 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C3%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold782 SAMTools SNP 197861 197861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold782 SAMTools SNP 197867 197867 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold782 SAMTools SNP 197888 197888 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C0%2C4%3BMQ%3D49%3BFQ%3D36%3BPV4%3D0.012%2C0.015%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold782 SAMTools SNP 197898 197898 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C0%2C5%3BMQ%3D49%3BFQ%3D28%3BPV4%3D0.015%2C0.0019%2C1%2C5.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold782 SAMTools SNP 197924 197924 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D204%3BPV4%3D6e-06%2C0.25%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold782 SAMTools SNP 198221 198221 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C13%2C3%3BMQ%3D49%3BFQ%3D202%3BPV4%3D4.8e-06%2C0.021%2C0.18%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold782 SAMTools SNP 198266 198266 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D48%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold782 SAMTools SNP 198442 198442 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C24%2C0:45 scaffold782 SAMTools SNP 198487 198487 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.44%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C29:32 scaffold782 SAMTools SNP 198839 198839 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold782 SAMTools SNP 198896 198896 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D2.9e-05%2C5.2e-05%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold782 SAMTools SNP 198974 198974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold782 SAMTools SNP 200454 200454 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold782 SAMTools SNP 200489 200489 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold782 SAMTools SNP 201776 201776 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C14%2C2%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 202221 202221 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C13%2C1%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.026%2C0.21%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 202248 202248 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D46%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C170:99 scaffold782 SAMTools SNP 202600 202600 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 202854 202854 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C23%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 202866 202866 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C10%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.24%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 202887 202887 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C18%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold782 SAMTools SNP 202917 202917 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold782 SAMTools SNP 203238 203238 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C2%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 203392 203392 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C184:42 scaffold782 SAMTools SNP 203406 203406 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold782 SAMTools SNP 203517 203517 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C108:99 scaffold782 SAMTools SNP 203526 203526 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C234:99 scaffold782 SAMTools SNP 203989 203989 105 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold782 SAMTools SNP 204142 204142 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C0.0004%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold782 SAMTools SNP 204630 204630 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C252:99 scaffold782 SAMTools SNP 204639 204639 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.59%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C247:99 scaffold782 SAMTools SNP 204933 204933 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold782 SAMTools SNP 205451 205451 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold782 SAMTools SNP 206043 206043 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C9%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold782 SAMTools SNP 207074 207074 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold782 SAMTools SNP 207580 207580 29.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold782 SAMTools SNP 222019 222019 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 222611 222611 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold782 SAMTools SNP 228164 228164 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold782 SAMTools SNP 228307 228307 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.002%2C0.0055%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold782 SAMTools SNP 228315 228315 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.013%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C254:99 scaffold782 SAMTools SNP 228954 228954 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 228978 228978 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 229827 229827 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.016%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 229886 229886 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 229901 229901 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.087%2C0.37%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold782 SAMTools SNP 230275 230275 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold782 SAMTools SNP 230296 230296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold782 SAMTools SNP 230703 230703 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold782 SAMTools SNP 230706 230706 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C81:31 scaffold782 SAMTools SNP 234238 234238 31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D23.6%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C51:54 scaffold782 SAMTools SNP 234621 234621 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold782 SAMTools SNP 234688 234688 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold782 SAMTools SNP 234937 234937 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold782 SAMTools SNP 234953 234953 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold782 SAMTools SNP 236247 236247 43.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold782 SAMTools SNP 237023 237023 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold782 SAMTools SNP 237960 237960 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C12%2C0:21 scaffold782 SAMTools SNP 238691 238691 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.38%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold782 SAMTools SNP 238736 238736 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold782 SAMTools SNP 238739 238739 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold782 SAMTools SNP 238772 238772 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold782 SAMTools SNP 239269 239269 147 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.45%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold782 SAMTools SNP 239389 239389 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold782 SAMTools SNP 239709 239709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C6%2C9%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.65%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold782 SAMTools SNP 239783 239783 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.06%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold782 SAMTools SNP 239787 239787 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold782 SAMTools SNP 240592 240592 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold782 SAMTools SNP 240909 240909 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold782 SAMTools SNP 242594 242594 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold782 SAMTools SNP 247407 247407 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold782 SAMTools SNP 248146 248146 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold783 SAMTools SNP 35827 35827 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold783 SAMTools SNP 35849 35849 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold783 SAMTools SNP 41411 41411 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.025%2C0.019%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold783 SAMTools SNP 41494 41494 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C224:54 scaffold783 SAMTools SNP 46672 46672 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C0.26%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold783 SAMTools SNP 46899 46899 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold783 SAMTools SNP 49103 49103 47 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold783 SAMTools SNP 50496 50496 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold783 SAMTools SNP 50548 50548 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold783 SAMTools SNP 51571 51571 101 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C236:99 scaffold783 SAMTools SNP 51590 51590 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold783 SAMTools SNP 51950 51950 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C16%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold783 SAMTools SNP 51992 51992 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold783 SAMTools SNP 52241 52241 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C22%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.004%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold783 SAMTools SNP 52287 52287 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.2%2C1%2C7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold783 SAMTools SNP 53135 53135 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold783 SAMTools SNP 53144 53144 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.13%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C251:99 scaffold783 SAMTools SNP 69617 69617 138 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.00061%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C64:67 scaffold783 SAMTools SNP 70472 70472 53.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C21%2C0:39 scaffold783 SAMTools SNP 70537 70537 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C39%2C0:75 scaffold783 SAMTools SNP 71240 71240 26 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold783 SAMTools SNP 72859 72859 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold783 SAMTools SNP 81610 81610 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold783 SAMTools SNP 131059 131059 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold783 SAMTools SNP 131760 131760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold783 SAMTools SNP 132095 132095 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C8%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold783 SAMTools SNP 132134 132134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C39%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold783 SAMTools SNP 132677 132677 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 133090 133090 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold783 SAMTools SNP 133784 133784 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold783 SAMTools SNP 134298 134298 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold783 SAMTools SNP 134420 134420 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold783 SAMTools SNP 134455 134455 95 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C104:99 scaffold783 SAMTools SNP 134518 134518 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.43%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C163:62 scaffold783 SAMTools SNP 134792 134792 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.5%2C0.35%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold783 SAMTools SNP 134804 134804 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.49%2C0.0082%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold783 SAMTools SNP 134822 134822 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.034%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold783 SAMTools SNP 135035 135035 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0174%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.21%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold783 SAMTools SNP 135037 135037 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0193%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold783 SAMTools SNP 136371 136371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold783 SAMTools SNP 137754 137754 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold783 SAMTools SNP 137788 137788 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold783 SAMTools SNP 137843 137843 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold783 SAMTools SNP 142868 142868 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold783 SAMTools SNP 143422 143422 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C30%2C0:57 scaffold783 SAMTools SNP 143488 143488 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C8%2C5%3BMQ%3D39%3BFQ%3D-52%3BPV4%3D0.52%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold783 SAMTools SNP 144174 144174 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold783 SAMTools SNP 148861 148861 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D46%3BFQ%3D4.77%3BPV4%3D0.33%2C1%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C30:33 scaffold783 SAMTools SNP 162196 162196 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.081%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C241:99 scaffold783 SAMTools SNP 162199 162199 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.18%2C7.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C220:99 scaffold783 SAMTools SNP 162505 162505 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C15%2C0:27 scaffold783 SAMTools SNP 162913 162913 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.065%2C2.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold783 SAMTools SNP 178639 178639 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold783 SAMTools SNP 179741 179741 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C2.2e-06%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold783 SAMTools SNP 180791 180791 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold783 SAMTools SNP 180827 180827 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C1%2C6%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.06%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold783 SAMTools SNP 181352 181352 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold783 SAMTools SNP 181774 181774 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.022%2C0.0012%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold783 SAMTools SNP 181785 181785 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold783 SAMTools SNP 183225 183225 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold783 SAMTools SNP 183445 183445 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold783 SAMTools SNP 183461 183461 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.11%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold783 SAMTools SNP 183852 183852 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.3%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold783 SAMTools SNP 186035 186035 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold783 SAMTools SNP 186459 186459 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C16%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 187045 187045 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold783 SAMTools SNP 187081 187081 50 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.4%2C3.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold783 SAMTools SNP 188026 188026 40.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold783 SAMTools SNP 195249 195249 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C0%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold783 SAMTools SNP 197411 197411 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold783 SAMTools SNP 198612 198612 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold783 SAMTools SNP 202949 202949 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold783 SAMTools SNP 202955 202955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold783 SAMTools SNP 203134 203134 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold783 SAMTools SNP 203168 203168 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold783 SAMTools SNP 203258 203258 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C14%2C0%3BMQ%3D49%3BFQ%3D204%3BPV4%3D0.48%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold783 SAMTools SNP 203283 203283 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C17%2C0%3BMQ%3D48%3BFQ%3D212%3BPV4%3D0.23%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold783 SAMTools SNP 203406 203406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.12%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold783 SAMTools SNP 203478 203478 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D45%3BFQ%3D-47%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C20%2C0:37 scaffold783 SAMTools SNP 205256 205256 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C12%2C23%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.29%2C0.22%2C0.16%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 205307 205307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C7%2C13%3BMQ%3D45%3BFQ%3D225%3BPV4%3D1%2C0.15%2C0.4%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 205340 205340 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C3%2C20%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.32%2C1%2C0.1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 205382 205382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C13%2C3%2C12%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.29%2C0.11%2C0.27%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 210966 210966 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold783 SAMTools SNP 212600 212600 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold783 SAMTools SNP 212611 212611 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold783 SAMTools SNP 213045 213045 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold783 SAMTools SNP 219256 219256 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold783 SAMTools SNP 219752 219752 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold783 SAMTools SNP 224756 224756 51.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold783 SAMTools SNP 226986 226986 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C9%2C0:16 scaffold783 SAMTools SNP 241042 241042 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C13%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.38%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C216:99 scaffold783 SAMTools SNP 241764 241764 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C277%2C34%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7e-11%2C1%2C1%2C9.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 242697 242697 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D303%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C27%2C21%2C34%3BMQ%3D50%3BFQ%3D92%3BPV4%3D8.1e-13%2C1.6e-33%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold783 SAMTools SNP 242841 242841 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C60%2C46%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 242859 242859 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C218%2C17%2C38%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold783 SAMTools SNP 243231 243231 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C50%2C2%2C14%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.08%2C0.27%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold783 SAMTools SNP 243234 243234 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C49%2C2%2C14%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.079%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold783 SAMTools SNP 243580 243580 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C26%2C21%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold783 SAMTools SNP 244060 244060 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C36%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold783 SAMTools SNP 244069 244069 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C30%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold783 SAMTools SNP 244465 244465 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C14%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold783 SAMTools SNP 253675 253675 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold783 SAMTools SNP 253686 253686 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold783 SAMTools SNP 253941 253941 191 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold783 SAMTools SNP 254744 254744 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold783 SAMTools SNP 255204 255204 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold783 SAMTools SNP 258566 258566 52.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold783 SAMTools SNP 258944 258944 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold783 SAMTools SNP 261920 261920 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold783 SAMTools SNP 268853 268853 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold783 SAMTools SNP 269026 269026 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 3564 3564 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 4373 4373 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 4819 4819 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C110:91 scaffold784 SAMTools SNP 5088 5088 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.057%2C0.17%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold784 SAMTools SNP 20746 20746 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 25565 25565 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold784 SAMTools SNP 25589 25589 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold784 SAMTools SNP 26130 26130 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold784 SAMTools SNP 65294 65294 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold784 SAMTools SNP 71090 71090 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold784 SAMTools SNP 91847 91847 50.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C18%2C0:33 scaffold784 SAMTools SNP 92473 92473 50.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold784 SAMTools SNP 194989 194989 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold784 SAMTools SNP 195031 195031 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold784 SAMTools SNP 195046 195046 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold784 SAMTools SNP 236572 236572 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold784 SAMTools SNP 236603 236603 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 236638 236638 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 255124 255124 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 261059 261059 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 261079 261079 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 278196 278196 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold784 SAMTools SNP 282487 282487 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 282992 282992 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 298891 298891 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 298922 298922 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold784 SAMTools SNP 299452 299452 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold784 SAMTools SNP 319046 319046 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.9%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C44:41 scaffold784 SAMTools SNP 320319 320319 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 322689 322689 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C93%2C0:99 scaffold784 SAMTools SNP 322731 322731 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold784 SAMTools SNP 322740 322740 98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold784 SAMTools SNP 323089 323089 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold784 SAMTools SNP 323775 323775 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.56%2C4.6e-07%2C1%2C0.00072;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold784 SAMTools SNP 324244 324244 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold784 SAMTools SNP 325370 325370 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold784 SAMTools SNP 325376 325376 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.24%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold784 SAMTools SNP 327778 327778 18.6 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold784 SAMTools SNP 330423 330423 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C12%2C0:21 scaffold784 SAMTools SNP 330453 330453 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 331339 331339 217 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.18%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold784 SAMTools SNP 331402 331402 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold784 SAMTools SNP 332712 332712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C44%2C10%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.34%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 332731 332731 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.23%2C1%2C1%2C9.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold784 SAMTools SNP 332742 332742 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C15%2C1%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.00065%2C1%2C1%2C0.00029;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold784 SAMTools SNP 332778 332778 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C0.27%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 334990 334990 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C2%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.2%2C0.23%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold784 SAMTools SNP 335032 335032 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C3%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.024%2C1%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold784 SAMTools SNP 337060 337060 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 342849 342849 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C116:28 scaffold784 SAMTools SNP 342959 342959 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold784 SAMTools SNP 355300 355300 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.49%2C1%2C0.00032;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C230:77 scaffold784 SAMTools SNP 355352 355352 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C14%2C5%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold784 SAMTools SNP 355581 355581 76 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C24%2C11%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.012%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold784 SAMTools SNP 355597 355597 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C25%2C10%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.039%2C0.0059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold784 SAMTools SNP 355944 355944 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C31%2C0%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold784 SAMTools SNP 356475 356475 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold784 SAMTools SNP 369990 369990 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold784 SAMTools SNP 374507 374507 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 374512 374512 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 397578 397578 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 397597 397597 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 439856 439856 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold784 SAMTools SNP 440327 440327 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 445571 445571 35.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C21%2C0:39 scaffold784 SAMTools SNP 448679 448679 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold784 SAMTools SNP 448713 448713 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold784 SAMTools SNP 449894 449894 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 452897 452897 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 456471 456471 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold784 SAMTools SNP 456502 456502 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C33%2C0:63 scaffold784 SAMTools SNP 460553 460553 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 544131 544131 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 580747 580747 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold784 SAMTools SNP 585171 585171 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold784 SAMTools SNP 585763 585763 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 586391 586391 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 604727 604727 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold784 SAMTools SNP 605037 605037 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold784 SAMTools SNP 606202 606202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold784 SAMTools SNP 606539 606539 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C24%2C0:45 scaffold784 SAMTools SNP 606733 606733 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C5.8e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold784 SAMTools SNP 606909 606909 219 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C21%2C0:39 scaffold784 SAMTools SNP 607331 607331 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold784 SAMTools SNP 607777 607777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold784 SAMTools SNP 608024 608024 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 608589 608589 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 608631 608631 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C1%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold784 SAMTools SNP 609017 609017 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold784 SAMTools SNP 609257 609257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold784 SAMTools SNP 609297 609297 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold784 SAMTools SNP 609431 609431 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.15%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold784 SAMTools SNP 609741 609741 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold784 SAMTools SNP 610264 610264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 610317 610317 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C15%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 610334 610334 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C15%2C19%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 611282 611282 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 611309 611309 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 611369 611369 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 611387 611387 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold784 SAMTools SNP 612162 612162 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold784 SAMTools SNP 613110 613110 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C16%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold784 SAMTools SNP 614479 614479 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C3%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold784 SAMTools SNP 614985 614985 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold784 SAMTools SNP 615025 615025 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C42%2C0:81 scaffold784 SAMTools SNP 622146 622146 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold784 SAMTools SNP 632356 632356 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 633146 633146 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C9%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold784 SAMTools SNP 634822 634822 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C135%2C9%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.45%2C0.47%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold784 SAMTools SNP 635362 635362 6.19 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D3%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C69%2C0:48 scaffold784 SAMTools SNP 636694 636694 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold784 SAMTools SNP 636700 636700 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C60%2C0:99 scaffold784 SAMTools SNP 636785 636785 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C96%2C0:99 scaffold784 SAMTools SNP 637125 637125 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C54%2C14%2C70%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.061%2C1.3e-98%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold784 SAMTools SNP 637465 637465 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C27%2C0:51 scaffold784 SAMTools SNP 637597 637597 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold784 SAMTools SNP 643444 643444 45.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold784 SAMTools SNP 643824 643824 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 644622 644622 226 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold784 SAMTools SNP 644676 644676 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C21%2C0:39 scaffold784 SAMTools SNP 644721 644721 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C0%2C7%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.085%2C3e-05%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold784 SAMTools SNP 644724 644724 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold784 SAMTools SNP 645466 645466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C14%2C49%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 645761 645761 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold784 SAMTools SNP 646145 646145 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold784 SAMTools SNP 646471 646471 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold784 SAMTools SNP 646639 646639 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold784 SAMTools SNP 646873 646873 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.021%2C0.0021%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold784 SAMTools SNP 651418 651418 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C13%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 654354 654354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C1%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 654414 654414 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold784 SAMTools SNP 654519 654519 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C1%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold784 SAMTools SNP 654549 654549 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C72%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 668648 668648 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C0%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.28%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C246:99 scaffold784 SAMTools SNP 669000 669000 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.48%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold784 SAMTools SNP 669373 669373 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.54%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold784 SAMTools SNP 669490 669490 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C219:61 scaffold784 SAMTools SNP 670813 670813 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C22%2C1%2C11%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold784 SAMTools SNP 671040 671040 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 671076 671076 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold784 SAMTools SNP 671673 671673 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 673773 673773 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.47%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold784 SAMTools SNP 674039 674039 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C26%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.2%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 674193 674193 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 674400 674400 200 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C4%2C5%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold784 SAMTools SNP 674478 674478 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C2%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.64%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold784 SAMTools SNP 675026 675026 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.016%2C0.35%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold784 SAMTools SNP 675319 675319 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold784 SAMTools SNP 675787 675787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C13%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.42%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 676797 676797 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.23%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold784 SAMTools SNP 677398 677398 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.019%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 678385 678385 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C9%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 680179 680179 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold784 SAMTools SNP 681110 681110 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold784 SAMTools SNP 776530 776530 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C4.8e-33%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C212:56 scaffold784 SAMTools SNP 776712 776712 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C13%2C2%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.019%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold784 SAMTools SNP 777720 777720 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C0%2C17%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.0049%2C0.00039%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold784 SAMTools SNP 777888 777888 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 779015 779015 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C2%2C5%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.27%2C3.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold784 SAMTools SNP 779051 779051 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold784 SAMTools SNP 779172 779172 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C50%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold784 SAMTools SNP 779191 779191 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C42%2C9%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 779245 779245 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C3%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold784 SAMTools SNP 780169 780169 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C25%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 780178 780178 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C13%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold784 SAMTools SNP 780232 780232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 781493 781493 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C57%2C14%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 781936 781936 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C67%2C0%2C46%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1.2e-14%2C1%2C1%2C7.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold784 SAMTools SNP 782023 782023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D514%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D181%2C101%2C146%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C8.4e-11%2C0.086%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 782047 782047 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D526%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C88%2C175%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 785027 785027 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C0.057%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 786204 786204 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.49%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold784 SAMTools SNP 786657 786657 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C16%2C7%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.69%2C0.17%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold784 SAMTools SNP 786819 786819 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C9%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-09%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 787131 787131 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.13%2C1.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold784 SAMTools SNP 787223 787223 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 787666 787666 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold784 SAMTools SNP 787669 787669 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold784 SAMTools SNP 787726 787726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 788376 788376 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C0%2C11%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold784 SAMTools SNP 788388 788388 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C1%2C12%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.39%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold784 SAMTools SNP 788706 788706 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C19%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.49%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold784 SAMTools SNP 788818 788818 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold784 SAMTools SNP 788838 788838 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold784 SAMTools SNP 789182 789182 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 789287 789287 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C8%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.32%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold784 SAMTools SNP 825387 825387 44.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold784 SAMTools SNP 829706 829706 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold784 SAMTools SNP 865351 865351 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold784 SAMTools SNP 866651 866651 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold784 SAMTools SNP 867071 867071 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold784 SAMTools SNP 867073 867073 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold784 SAMTools SNP 868016 868016 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold784 SAMTools SNP 868042 868042 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 868981 868981 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold784 SAMTools SNP 869041 869041 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C194:63 scaffold784 SAMTools SNP 869044 869044 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C168:73 scaffold784 SAMTools SNP 869061 869061 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold784 SAMTools SNP 869499 869499 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold784 SAMTools SNP 869523 869523 136 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold784 SAMTools SNP 869538 869538 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold784 SAMTools SNP 870433 870433 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold784 SAMTools SNP 870575 870575 5.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold784 SAMTools SNP 873487 873487 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C1%2C3%3BMQ%3D44%3BFQ%3D99%3BPV4%3D0.59%2C0.1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold784 SAMTools SNP 873516 873516 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C5%3BMQ%3D42%3BFQ%3D64%3BPV4%3D0.23%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C91:94 scaffold784 SAMTools SNP 873944 873944 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C3%3BMQ%3D47%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C198:99 scaffold784 SAMTools SNP 873975 873975 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D40%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C149:99 scaffold784 SAMTools SNP 874001 874001 13.2 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D23%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0%2C48%2C1%2C36:5 scaffold784 SAMTools SNP 874013 874013 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold784 SAMTools SNP 874160 874160 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 874167 874167 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 899085 899085 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.24%2C5.1e-13%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C238:55 scaffold784 SAMTools SNP 899094 899094 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C36%2C0:69 scaffold784 SAMTools SNP 903078 903078 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C6.5e-53%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C243:99 scaffold784 SAMTools SNP 904843 904843 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.43%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold784 SAMTools SNP 904883 904883 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C9%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0013%2C6.9e-07%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold784 SAMTools SNP 904912 904912 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C16%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold784 SAMTools SNP 904930 904930 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C19%2C17%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold784 SAMTools SNP 905087 905087 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C3%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.041%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold784 SAMTools SNP 905111 905111 204 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C19%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.14%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C77:80 scaffold784 SAMTools SNP 905620 905620 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D49%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold784 SAMTools SNP 905654 905654 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D1%2C0.22%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C77:44 scaffold784 SAMTools SNP 905662 905662 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D39%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C42:45 scaffold784 SAMTools SNP 905713 905713 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C1%3BMQ%3D47%3BFQ%3D105%3BPV4%3D1%2C0.13%2C0.17%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C178:99 scaffold784 SAMTools SNP 910285 910285 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C9%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.0046%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold784 SAMTools SNP 910288 910288 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0047%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold784 SAMTools SNP 910312 910312 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C20%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.35%2C0.02%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C241:99 scaffold784 SAMTools SNP 910492 910492 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C20%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.29%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C202:99 scaffold784 SAMTools SNP 911101 911101 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold784 SAMTools SNP 911104 911104 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold784 SAMTools SNP 911472 911472 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C74:77 scaffold784 SAMTools SNP 911484 911484 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold784 SAMTools SNP 921473 921473 28.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold784 SAMTools SNP 921981 921981 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C9%2C0:16 scaffold784 SAMTools SNP 925963 925963 197 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C24%2C0:45 scaffold784 SAMTools SNP 926580 926580 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold784 SAMTools SNP 926581 926581 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 926699 926699 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold784 SAMTools SNP 926726 926726 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold784 SAMTools SNP 928716 928716 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C0%2C2%3BMQ%3D45%3BFQ%3D33%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C188:63 scaffold786 SAMTools SNP 779 779 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 785 785 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 879 879 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 23702 23702 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 26918 26918 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C16%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 29040 29040 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C10%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.33%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 48120 48120 22.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold786 SAMTools SNP 60318 60318 68 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C24%2C0:45 scaffold786 SAMTools SNP 60426 60426 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C58%2C2%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.14%2C1.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C185:99 scaffold786 SAMTools SNP 60507 60507 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C57%2C0:99 scaffold786 SAMTools SNP 62072 62072 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold786 SAMTools SNP 62634 62634 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D7.7%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C38:36 scaffold786 SAMTools SNP 62711 62711 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold786 SAMTools SNP 65210 65210 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C46%2C7%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1.8e-06%2C0.0041%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold786 SAMTools SNP 65342 65342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold786 SAMTools SNP 65345 65345 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold786 SAMTools SNP 66234 66234 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C52%2C10%2C42%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1.1e-05%2C4e-76%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold786 SAMTools SNP 66306 66306 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C33%2C0:63 scaffold786 SAMTools SNP 77462 77462 42 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C30%2C0:57 scaffold786 SAMTools SNP 80238 80238 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.51%2C0.0044%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold786 SAMTools SNP 80953 80953 223 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C18%2C1%3BMQ%3D48%3BFQ%3D224%3BPV4%3D0.00056%2C1%2C0.0052%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold786 SAMTools SNP 81001 81001 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C30%2C11%2C15%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 81106 81106 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C37%2C21%3BMQ%3D48%3BFQ%3D37%3BPV4%3D0.00075%2C1%2C0.23%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold786 SAMTools SNP 81921 81921 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 82305 82305 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C27%2C0:51 scaffold786 SAMTools SNP 82440 82440 40.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C12%2C0:21 scaffold786 SAMTools SNP 82512 82512 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 82955 82955 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C54%2C49%2C39%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.47%2C9.9e-119%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold786 SAMTools SNP 83977 83977 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C17%2C10%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.55%2C3.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold786 SAMTools SNP 84054 84054 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C255%2C0:99 scaffold786 SAMTools SNP 84207 84207 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C17%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.011%2C0.21%2C0.48%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 84753 84753 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 84796 84796 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 84954 84954 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C5%2C4%3BMQ%3D48%3BFQ%3D220%3BPV4%3D1%2C1%2C0.36%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold786 SAMTools SNP 87337 87337 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C9%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 91508 91508 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.5e-08%2C1%2C9.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold786 SAMTools SNP 91722 91722 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold786 SAMTools SNP 96219 96219 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold786 SAMTools SNP 96228 96228 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold786 SAMTools SNP 96231 96231 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold786 SAMTools SNP 96236 96236 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D23%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.56%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold786 SAMTools SNP 96246 96246 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 96368 96368 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 96381 96381 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold786 SAMTools SNP 100791 100791 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold786 SAMTools SNP 100845 100845 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold786 SAMTools SNP 107189 107189 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C6%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.62%2C1.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C213:84 scaffold786 SAMTools SNP 110747 110747 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.014%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C237:99 scaffold786 SAMTools SNP 110771 110771 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C18%2C0:33 scaffold786 SAMTools SNP 110774 110774 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold786 SAMTools SNP 110846 110846 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold786 SAMTools SNP 111414 111414 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold786 SAMTools SNP 112944 112944 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold786 SAMTools SNP 119683 119683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C79%2C6%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1.1e-61%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 119795 119795 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C5%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.045%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold786 SAMTools SNP 119824 119824 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C38%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold786 SAMTools SNP 120738 120738 170 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C27%2C13%2C7%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold786 SAMTools SNP 120911 120911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D668%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C544%2C122%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.18%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 121584 121584 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 122507 122507 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold786 SAMTools SNP 126647 126647 15.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold786 SAMTools SNP 128169 128169 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0035%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold786 SAMTools SNP 128967 128967 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold786 SAMTools SNP 133409 133409 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 133446 133446 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold786 SAMTools SNP 134104 134104 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 134971 134971 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 135025 135025 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 135356 135356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 149817 149817 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold786 SAMTools SNP 149853 149853 56.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold786 SAMTools SNP 156989 156989 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C18%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C4.4e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold786 SAMTools SNP 157186 157186 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C36%2C46%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.078%2C7.3e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C49:52 scaffold786 SAMTools SNP 157657 157657 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C0%3BMQ%3D39%3BFQ%3D-64%3BPV4%3D1%2C1%2C0.22%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C37%2C0:71 scaffold786 SAMTools SNP 157732 157732 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C13%3BMQ%3D31%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C69%2C0:99 scaffold786 SAMTools SNP 157757 157757 50 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C26%2C17%2C79%2C0%2C76:16 scaffold786 SAMTools SNP 157782 157782 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold786 SAMTools SNP 157827 157827 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 157828 157828 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 161626 161626 16.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C9.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C156:49 scaffold786 SAMTools SNP 161716 161716 41.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold786 SAMTools SNP 161879 161879 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 161891 161891 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 162146 162146 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold786 SAMTools SNP 162388 162388 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 163188 163188 14.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold786 SAMTools SNP 163371 163371 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C18%2C0:33 scaffold786 SAMTools SNP 167714 167714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C10%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.0045%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C219:99 scaffold786 SAMTools SNP 168645 168645 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C6%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.68%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold786 SAMTools SNP 168771 168771 139 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C4%2C3%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold786 SAMTools SNP 168783 168783 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C18%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold786 SAMTools SNP 169444 169444 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 169863 169863 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold786 SAMTools SNP 170759 170759 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold786 SAMTools SNP 170768 170768 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C40%2C16:45 scaffold786 SAMTools SNP 170795 170795 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold786 SAMTools SNP 171936 171936 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C3%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold786 SAMTools SNP 171966 171966 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C13%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C48%2C0:93 scaffold786 SAMTools SNP 171990 171990 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 173903 173903 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold786 SAMTools SNP 175133 175133 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C15%2C0%3BMQ%3D49%3BFQ%3D41%3BPV4%3D0.053%2C8.5e-25%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold786 SAMTools SNP 175891 175891 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold786 SAMTools SNP 223236 223236 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C15%3BMQ%3D48%3BFQ%3D7.8%3BPV4%3D0.48%2C1.6e-18%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C34:37 scaffold786 SAMTools SNP 225813 225813 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold786 SAMTools SNP 226509 226509 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 227182 227182 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.45%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C11:14 scaffold786 SAMTools SNP 227191 227191 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold786 SAMTools SNP 230647 230647 42.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold786 SAMTools SNP 238709 238709 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold786 SAMTools SNP 238746 238746 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C16%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold786 SAMTools SNP 238980 238980 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C30%2C6%3BMQ%3D50%3BFQ%3D-41%3BPV4%3D0.34%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C14%2C0:25 scaffold786 SAMTools SNP 240360 240360 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C10%2C39%3BMQ%3D50%3BFQ%3D-81%3BPV4%3D0.39%2C0.32%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold786 SAMTools SNP 240821 240821 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.14%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold786 SAMTools SNP 240829 240829 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.061%2C0.015%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold786 SAMTools SNP 241193 241193 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.029%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold786 SAMTools SNP 241199 241199 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.029%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold786 SAMTools SNP 241481 241481 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C11%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold786 SAMTools SNP 243501 243501 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.23%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold786 SAMTools SNP 243549 243549 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold786 SAMTools SNP 243832 243832 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C8%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C105%2C0:99 scaffold786 SAMTools SNP 244334 244334 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C30%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold786 SAMTools SNP 244363 244363 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 250958 250958 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0025%2C1%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold786 SAMTools SNP 250983 250983 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold786 SAMTools SNP 250984 250984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold786 SAMTools SNP 251056 251056 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C9%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.0019%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold786 SAMTools SNP 253500 253500 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C15%2C38%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.00038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold786 SAMTools SNP 253744 253744 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.00044%2C0.31%2C1%2C3.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold786 SAMTools SNP 253745 253745 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D43%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.00057%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold786 SAMTools SNP 254481 254481 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D1%2C0.44%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold786 SAMTools SNP 254642 254642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C14%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.014%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 254898 254898 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold786 SAMTools SNP 254939 254939 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C2%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.66%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold786 SAMTools SNP 255011 255011 219 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C18%2C9%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.4%2C4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold786 SAMTools SNP 255493 255493 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold786 SAMTools SNP 256297 256297 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.24%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold786 SAMTools SNP 256342 256342 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold786 SAMTools SNP 259089 259089 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C4%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.014%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold786 SAMTools SNP 259270 259270 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.11%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold786 SAMTools SNP 259817 259817 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold786 SAMTools SNP 260176 260176 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C23%2C2%2C6%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.44%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold786 SAMTools SNP 260409 260409 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C46%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 260416 260416 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C45%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 260686 260686 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C13%2C24%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.0023%2C0.088%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold786 SAMTools SNP 262053 262053 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C15%2C34%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1.5e-24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 262066 262066 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 263408 263408 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C37%2C19%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C2.9e-05%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 263457 263457 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C11%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold786 SAMTools SNP 263534 263534 218 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C31%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C196:99 scaffold786 SAMTools SNP 267498 267498 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold786 SAMTools SNP 268662 268662 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold786 SAMTools SNP 269092 269092 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.64%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold786 SAMTools SNP 269137 269137 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 274178 274178 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold786 SAMTools SNP 276995 276995 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C15%3BMQ%3D49%3BFQ%3D15.1%3BPV4%3D1%2C5.8e-20%2C0.067%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C244:44 scaffold786 SAMTools SNP 282398 282398 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.36%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold786 SAMTools SNP 289034 289034 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold786 SAMTools SNP 289238 289238 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C13%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold786 SAMTools SNP 290028 290028 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold786 SAMTools SNP 290275 290275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.24%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 291364 291364 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 291397 291397 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.51%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold786 SAMTools SNP 291425 291425 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C10%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.47%2C1.3e-06%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C204:59 scaffold786 SAMTools SNP 300412 300412 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold786 SAMTools SNP 302397 302397 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C23%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.054%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold786 SAMTools SNP 303666 303666 13.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C15%2C0:23 scaffold786 SAMTools SNP 303728 303728 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C16%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.081%2C0.0064%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold786 SAMTools SNP 303818 303818 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0051%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C102:80 scaffold786 SAMTools SNP 304390 304390 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold786 SAMTools SNP 304704 304704 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold786 SAMTools SNP 304726 304726 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C9%2C0:16 scaffold786 SAMTools SNP 308987 308987 60.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2070%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold786 SAMTools SNP 309315 309315 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.8e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C124:43 scaffold786 SAMTools SNP 309552 309552 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C5%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.58%2C8.3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C165:68 scaffold786 SAMTools SNP 309882 309882 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C224%2C28%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0:99 scaffold786 SAMTools SNP 310292 310292 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold786 SAMTools SNP 312472 312472 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D861%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C494%2C358%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 312523 312523 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D390%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C102%3BMQ%3D48%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 312544 312544 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D570%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C397%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 313312 313312 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C163%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold786 SAMTools SNP 313418 313418 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold786 SAMTools SNP 315111 315111 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold786 SAMTools SNP 315923 315923 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold786 SAMTools SNP 315971 315971 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold786 SAMTools SNP 318231 318231 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold786 SAMTools SNP 319280 319280 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C12%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 319311 319311 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C17%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0004%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold786 SAMTools SNP 319418 319418 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C16%2C77%3BMQ%3D50%3BFQ%3D209%3BPV4%3D2.2e-13%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold786 SAMTools SNP 328961 328961 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold786 SAMTools SNP 340138 340138 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 340139 340139 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold786 SAMTools SNP 340194 340194 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C1%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C154%2C0:99 scaffold786 SAMTools SNP 342274 342274 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.086%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold786 SAMTools SNP 364582 364582 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold787 SAMTools SNP 589 589 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold787 SAMTools SNP 635 635 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D84.9%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C127:99 scaffold787 SAMTools SNP 1000 1000 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold787 SAMTools SNP 3255 3255 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.26%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold787 SAMTools SNP 3264 3264 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C251:63 scaffold787 SAMTools SNP 5463 5463 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.4%2C9.3e-08%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C20:23 scaffold787 SAMTools SNP 13202 13202 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold787 SAMTools SNP 14519 14519 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 15176 15176 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold787 SAMTools SNP 18125 18125 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C185:99 scaffold787 SAMTools SNP 18164 18164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C7%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.35%2C0.45%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold787 SAMTools SNP 18197 18197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.42%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 18819 18819 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 18997 18997 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C11%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold787 SAMTools SNP 19498 19498 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 19551 19551 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C2%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold787 SAMTools SNP 19627 19627 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold787 SAMTools SNP 19639 19639 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold787 SAMTools SNP 20391 20391 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold787 SAMTools SNP 20469 20469 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold787 SAMTools SNP 20897 20897 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold787 SAMTools SNP 21584 21584 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold787 SAMTools SNP 23173 23173 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.31%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold787 SAMTools SNP 23203 23203 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold787 SAMTools SNP 24088 24088 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C9%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 24686 24686 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C46%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold787 SAMTools SNP 24779 24779 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.24%2C3.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold787 SAMTools SNP 25059 25059 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C180:99 scaffold787 SAMTools SNP 25703 25703 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0058%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold787 SAMTools SNP 25779 25779 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold787 SAMTools SNP 25785 25785 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C3%2C20%2C1%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold787 SAMTools SNP 26284 26284 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C55%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold787 SAMTools SNP 26685 26685 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold787 SAMTools SNP 26697 26697 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold787 SAMTools SNP 44050 44050 12.7 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C12%2C0:18 scaffold787 SAMTools SNP 44442 44442 24.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold787 SAMTools SNP 45014 45014 86 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C69%2C0:99 scaffold787 SAMTools SNP 45126 45126 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C16%2C0%3BMQ%3D49%3BFQ%3D-66%3BPV4%3D1%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C39%2C0:75 scaffold787 SAMTools SNP 45162 45162 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold787 SAMTools SNP 45999 45999 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C25%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold787 SAMTools SNP 46104 46104 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C25%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold787 SAMTools SNP 46110 46110 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold787 SAMTools SNP 46745 46745 38.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold787 SAMTools SNP 47040 47040 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C167:30 scaffold787 SAMTools SNP 48382 48382 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold787 SAMTools SNP 52389 52389 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold787 SAMTools SNP 52411 52411 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold787 SAMTools SNP 55547 55547 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0015%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold787 SAMTools SNP 57768 57768 36.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold787 SAMTools SNP 57896 57896 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.021%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold787 SAMTools SNP 58265 58265 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C18%2C0:33 scaffold787 SAMTools SNP 58445 58445 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C24%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold787 SAMTools SNP 58460 58460 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C23%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold787 SAMTools SNP 60119 60119 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C82:36 scaffold787 SAMTools SNP 60165 60165 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold787 SAMTools SNP 141666 141666 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold787 SAMTools SNP 145689 145689 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 145931 145931 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold787 SAMTools SNP 160773 160773 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold787 SAMTools SNP 160823 160823 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold787 SAMTools SNP 160824 160824 132 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C217:99 scaffold787 SAMTools SNP 161204 161204 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C3%2C12%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.27%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold787 SAMTools SNP 162987 162987 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold787 SAMTools SNP 163025 163025 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold787 SAMTools SNP 163047 163047 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold787 SAMTools SNP 163058 163058 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold787 SAMTools SNP 163460 163460 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold787 SAMTools SNP 163549 163549 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C45%2C0:71 scaffold787 SAMTools SNP 163627 163627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold787 SAMTools SNP 163727 163727 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold787 SAMTools SNP 164001 164001 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold787 SAMTools SNP 164013 164013 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 164261 164261 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold787 SAMTools SNP 168915 168915 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C48%2C0:93 scaffold787 SAMTools SNP 175879 175879 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold787 SAMTools SNP 176893 176893 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold787 SAMTools SNP 183466 183466 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C21%2C0:39 scaffold787 SAMTools SNP 184539 184539 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.4%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C70:30 scaffold787 SAMTools SNP 185854 185854 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold787 SAMTools SNP 189565 189565 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C10%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 189666 189666 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0037%2C3.7e-09%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold787 SAMTools SNP 189670 189670 92 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C0%2C11%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.001%2C1e-07%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold787 SAMTools SNP 190617 190617 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C3%2C37%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.45%2C1.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold787 SAMTools SNP 191054 191054 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C14%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.0094%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold787 SAMTools SNP 191170 191170 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.26%2C0.13%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold787 SAMTools SNP 193306 193306 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold787 SAMTools SNP 197028 197028 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C29%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold787 SAMTools SNP 197119 197119 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 197548 197548 189 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C5e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold787 SAMTools SNP 197704 197704 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold787 SAMTools SNP 198057 198057 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 198366 198366 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C16%2C3%2C9%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.0017%2C0.17%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold787 SAMTools SNP 198932 198932 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D38%3BPV4%3D4.5e-05%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold787 SAMTools SNP 199039 199039 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 199081 199081 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C16%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 199813 199813 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.049%2C2.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C218:69 scaffold787 SAMTools SNP 200563 200563 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C31%2C0%2C14%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.00019%2C3.1e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold787 SAMTools SNP 201171 201171 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C30%2C17%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00092%2C0.091%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 201670 201670 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C6%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 202043 202043 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C1%2C5%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold787 SAMTools SNP 202477 202477 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C25%2C7%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold787 SAMTools SNP 202946 202946 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 202968 202968 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C55%2C14%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 208069 208069 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.011%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C126:44 scaffold787 SAMTools SNP 210744 210744 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 210754 210754 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 219894 219894 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold787 SAMTools SNP 219940 219940 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold787 SAMTools SNP 223617 223617 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold787 SAMTools SNP 223912 223912 28 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C2.1e-05%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C133:61 scaffold787 SAMTools SNP 226272 226272 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold787 SAMTools SNP 232328 232328 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold787 SAMTools SNP 235463 235463 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold787 SAMTools SNP 237473 237473 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold787 SAMTools SNP 243851 243851 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold787 SAMTools SNP 243925 243925 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C156:31 scaffold787 SAMTools SNP 244123 244123 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold787 SAMTools SNP 248520 248520 82 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold787 SAMTools SNP 252068 252068 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1.2e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C74:34 scaffold787 SAMTools SNP 257087 257087 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C32%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 271242 271242 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C77%2C116%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold787 SAMTools SNP 273199 273199 85 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold787 SAMTools SNP 278521 278521 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C218%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 278777 278777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold787 SAMTools SNP 278945 278945 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold787 SAMTools SNP 278970 278970 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold787 SAMTools SNP 279239 279239 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 279242 279242 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 285744 285744 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 285977 285977 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 287086 287086 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 287117 287117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D404%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C268%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 291489 291489 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C100%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold787 SAMTools SNP 291537 291537 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C102%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C255%2C0:99 scaffold788 SAMTools SNP 130900 130900 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold788 SAMTools SNP 150147 150147 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold789 SAMTools SNP 19109 19109 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 19140 19140 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 19376 19376 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C51%2C0:99 scaffold789 SAMTools SNP 20850 20850 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold789 SAMTools SNP 20859 20859 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C17%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.28%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold789 SAMTools SNP 20875 20875 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0006%2C4.9e-05%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold789 SAMTools SNP 20934 20934 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C44%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold789 SAMTools SNP 22394 22394 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 22406 22406 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C14%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 22550 22550 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C54%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold789 SAMTools SNP 26132 26132 212 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C36%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C229%2C0:99 scaffold789 SAMTools SNP 26291 26291 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 26334 26334 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 27458 27458 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 27498 27498 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold789 SAMTools SNP 29678 29678 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold789 SAMTools SNP 29694 29694 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold789 SAMTools SNP 30539 30539 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold789 SAMTools SNP 31455 31455 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0003%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.016%2C1.6e-06%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold789 SAMTools SNP 37137 37137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold789 SAMTools SNP 37209 37209 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold789 SAMTools SNP 41492 41492 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C10%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0079%2C0.13%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 42031 42031 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.024%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C223:36 scaffold789 SAMTools SNP 44279 44279 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 44547 44547 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold789 SAMTools SNP 44591 44591 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold789 SAMTools SNP 44717 44717 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C18%2C0:33 scaffold789 SAMTools SNP 44750 44750 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold789 SAMTools SNP 44810 44810 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C42%2C0:81 scaffold789 SAMTools SNP 45629 45629 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C8%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.75%2C2.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold789 SAMTools SNP 46349 46349 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.31%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C235:59 scaffold789 SAMTools SNP 47392 47392 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 47393 47393 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C0.053%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 51403 51403 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold789 SAMTools SNP 51425 51425 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold789 SAMTools SNP 55741 55741 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2701%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D365%2C1062%2C50%2C516%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.3e-18%2C1%2C1%2C3.4e-44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 55853 55853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1501%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C719%2C708%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold789 SAMTools SNP 56103 56103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2081%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D418%2C497%2C560%2C333%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 56589 56589 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2227%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1095%2C168%2C682%2C256%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.4e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 56727 56727 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1100%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D346%2C134%2C298%2C98%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.32%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold789 SAMTools SNP 56778 56778 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1176%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D187%2C408%2C50%2C381%3BMQ%3D50%3BFQ%3D63%3BPV4%3D2.9e-14%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold789 SAMTools SNP 58109 58109 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6772%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2070%2C1346%2C1398%2C1304%3BMQ%3D50%3BFQ%3D114%3BPV4%3D3.9e-12%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold789 SAMTools SNP 58596 58596 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5689%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2397%2C813%2C1787%2C602%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.93%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold789 SAMTools SNP 58667 58667 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6012%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D523%2C2868%2C445%2C2129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 58984 58984 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5048%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1883%2C364%2C1646%2C217%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 59219 59219 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3593%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D579%2C1287%2C174%2C367%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.64%2C5.8e-14%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold789 SAMTools SNP 59270 59270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4491%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C50%2C88%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.12%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold789 SAMTools SNP 60167 60167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1525%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D678%2C88%2C633%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 63760 63760 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold789 SAMTools SNP 63770 63770 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold789 SAMTools SNP 63894 63894 17.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold789 SAMTools SNP 64047 64047 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 64444 64444 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 64610 64610 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 64773 64773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold789 SAMTools SNP 65630 65630 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C34%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.086%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 65654 65654 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 65793 65793 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C17%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 66420 66420 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C6%2C19%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0026%2C0.45%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 66441 66441 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 66482 66482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 66919 66919 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.51%2C0.073%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C183:99 scaffold789 SAMTools SNP 68062 68062 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold789 SAMTools SNP 68511 68511 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C4%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C6.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 68517 68517 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold789 SAMTools SNP 68759 68759 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D0.33%2C2.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C82:33 scaffold789 SAMTools SNP 69073 69073 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C88%2C0%2C81%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C2.1e-50%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold789 SAMTools SNP 69136 69136 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold789 SAMTools SNP 72460 72460 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold789 SAMTools SNP 72658 72658 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C8%2C59%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.78%2C7e-163%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold789 SAMTools SNP 72667 72667 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C156%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold789 SAMTools SNP 74156 74156 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold789 SAMTools SNP 76963 76963 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.00056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C193:99 scaffold789 SAMTools SNP 79587 79587 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C4%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold789 SAMTools SNP 79631 79631 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold789 SAMTools SNP 79649 79649 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold789 SAMTools SNP 81722 81722 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold789 SAMTools SNP 82355 82355 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C12%2C0%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.0084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold789 SAMTools SNP 83765 83765 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0034%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C74:59 scaffold789 SAMTools SNP 84392 84392 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C36%2C0:69 scaffold789 SAMTools SNP 84971 84971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold789 SAMTools SNP 85028 85028 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold789 SAMTools SNP 85155 85155 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold789 SAMTools SNP 86305 86305 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold789 SAMTools SNP 86477 86477 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 86492 86492 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold789 SAMTools SNP 86507 86507 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold789 SAMTools SNP 87451 87451 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 88211 88211 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold789 SAMTools SNP 88226 88226 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold789 SAMTools SNP 88286 88286 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold789 SAMTools SNP 88435 88435 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold789 SAMTools SNP 88441 88441 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold789 SAMTools SNP 88468 88468 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold789 SAMTools SNP 88492 88492 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 88974 88974 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 92830 92830 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold789 SAMTools SNP 92833 92833 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold789 SAMTools SNP 93159 93159 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold789 SAMTools SNP 93195 93195 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold789 SAMTools SNP 93211 93211 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.57%2C0.21%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C148:99 scaffold789 SAMTools SNP 94230 94230 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold789 SAMTools SNP 94543 94543 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C21%2C0:39 scaffold789 SAMTools SNP 111473 111473 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold789 SAMTools SNP 111522 111522 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 128250 128250 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold789 SAMTools SNP 131003 131003 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 135147 135147 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C152:99 scaffold789 SAMTools SNP 135182 135182 211 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.47%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C150:99 scaffold789 SAMTools SNP 135227 135227 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold789 SAMTools SNP 135858 135858 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold789 SAMTools SNP 135869 135869 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold789 SAMTools SNP 136942 136942 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold789 SAMTools SNP 137747 137747 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold789 SAMTools SNP 137792 137792 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold789 SAMTools SNP 137855 137855 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C146:99 scaffold789 SAMTools SNP 137873 137873 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C8%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold789 SAMTools SNP 137891 137891 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C9%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.32%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold789 SAMTools SNP 138644 138644 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C26%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold789 SAMTools SNP 138686 138686 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold789 SAMTools SNP 138735 138735 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C4%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 139625 139625 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0075%2C1%2C1%2C3.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold789 SAMTools SNP 140100 140100 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 140305 140305 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold789 SAMTools SNP 140319 140319 200 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold789 SAMTools SNP 140496 140496 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold789 SAMTools SNP 140546 140546 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C12%2C2%3BMQ%3D50%3BFQ%3D168%3BPV4%3D6.7e-05%2C0.027%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C195:99 scaffold789 SAMTools SNP 140561 140561 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0034%2C3.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C216:99 scaffold789 SAMTools SNP 140738 140738 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold789 SAMTools SNP 141164 141164 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold789 SAMTools SNP 141174 141174 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold789 SAMTools SNP 141213 141213 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold789 SAMTools SNP 141558 141558 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold789 SAMTools SNP 141583 141583 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C9%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.31%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold789 SAMTools SNP 141648 141648 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C8%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C78:81 scaffold789 SAMTools SNP 141933 141933 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold789 SAMTools SNP 143237 143237 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold789 SAMTools SNP 143258 143258 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold789 SAMTools SNP 143853 143853 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 143873 143873 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.32%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold789 SAMTools SNP 143948 143948 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.45%2C1.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold789 SAMTools SNP 143975 143975 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.17%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C251:99 scaffold789 SAMTools SNP 144991 144991 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C212:99 scaffold789 SAMTools SNP 145013 145013 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C141:99 scaffold789 SAMTools SNP 145177 145177 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C21%2C0:39 scaffold789 SAMTools SNP 145992 145992 143 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C30%2C0:57 scaffold789 SAMTools SNP 146049 146049 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold789 SAMTools SNP 147741 147741 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold789 SAMTools SNP 147864 147864 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 147879 147879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold789 SAMTools SNP 147906 147906 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold789 SAMTools SNP 148385 148385 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 148413 148413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold789 SAMTools SNP 149048 149048 41.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold789 SAMTools SNP 149096 149096 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold789 SAMTools SNP 149282 149282 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold789 SAMTools SNP 149931 149931 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 149960 149960 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 150002 150002 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold789 SAMTools SNP 150032 150032 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold789 SAMTools SNP 150452 150452 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C240:66 scaffold789 SAMTools SNP 150542 150542 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold789 SAMTools SNP 150578 150578 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 150912 150912 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 151346 151346 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold789 SAMTools SNP 151413 151413 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold789 SAMTools SNP 151475 151475 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C15%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold789 SAMTools SNP 151905 151905 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-07%2C1%2C1%2C1.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 151934 151934 149 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.08%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold789 SAMTools SNP 151955 151955 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C36%2C19%2C4%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.00012%2C4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold789 SAMTools SNP 152264 152264 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C236:99 scaffold789 SAMTools SNP 154583 154583 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.29%2C1%2C0.00031;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold789 SAMTools SNP 154626 154626 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3068%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D819%2C1%2C2246%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.46%2C0.0086%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold789 SAMTools SNP 157154 157154 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2525%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1612%2C2%2C911%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 159311 159311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C73%2C14%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 159729 159729 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C1%2C14%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold789 SAMTools SNP 159866 159866 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C1%2C11%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.49%2C0.43%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold789 SAMTools SNP 159896 159896 133 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold789 SAMTools SNP 161061 161061 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold789 SAMTools SNP 162009 162009 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold789 SAMTools SNP 162336 162336 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold789 SAMTools SNP 162468 162468 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C142:99 scaffold789 SAMTools SNP 162828 162828 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C18%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.058%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 164528 164528 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.14%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold789 SAMTools SNP 165828 165828 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.32%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 167472 167472 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold789 SAMTools SNP 168690 168690 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C44%2C2%2C18%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.58%2C3.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold789 SAMTools SNP 168716 168716 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold789 SAMTools SNP 169985 169985 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold789 SAMTools SNP 170060 170060 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C52%2C9%2C23%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C6.2e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold789 SAMTools SNP 171408 171408 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C237:99 scaffold789 SAMTools SNP 172076 172076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C9%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 172105 172105 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C56%2C2%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 172135 172135 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C1%2C62%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.59%2C0.062%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 174004 174004 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C113:31 scaffold789 SAMTools SNP 174582 174582 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C11%2C0%3BMQ%3D41%3BFQ%3D154%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C222:99 scaffold789 SAMTools SNP 175117 175117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold789 SAMTools SNP 175312 175312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 175333 175333 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold789 SAMTools SNP 175345 175345 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold789 SAMTools SNP 175784 175784 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.56%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold789 SAMTools SNP 176825 176825 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold789 SAMTools SNP 176851 176851 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.042%2C8.5e-05%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold789 SAMTools SNP 177122 177122 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C20%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.11%2C5.1e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold789 SAMTools SNP 177618 177618 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C0%2C17%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.29%2C1.4e-06%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold789 SAMTools SNP 177638 177638 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C0%2C19%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold789 SAMTools SNP 178607 178607 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold789 SAMTools SNP 178862 178862 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold789 SAMTools SNP 178898 178898 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold789 SAMTools SNP 178904 178904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C111:99 scaffold789 SAMTools SNP 178916 178916 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.065%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold789 SAMTools SNP 179477 179477 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 179620 179620 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C5.5e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C223:39 scaffold789 SAMTools SNP 179891 179891 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C160:99 scaffold789 SAMTools SNP 180253 180253 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold789 SAMTools SNP 180710 180710 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C8%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0022%2C0.0061%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold789 SAMTools SNP 180715 180715 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.047%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold789 SAMTools SNP 181605 181605 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold789 SAMTools SNP 182444 182444 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C13%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold789 SAMTools SNP 184762 184762 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 184780 184780 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold789 SAMTools SNP 186409 186409 66 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C5.9e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C230:99 scaffold789 SAMTools SNP 186472 186472 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C4%2C5%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.42%2C2.6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold789 SAMTools SNP 186554 186554 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.56%2C5.6e-15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C216:68 scaffold789 SAMTools SNP 199728 199728 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C74%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 199734 199734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C10%2C16%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.01%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 199743 199743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C15%2C75%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 200620 200620 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C3%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.38%2C8.2e-05%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold789 SAMTools SNP 200664 200664 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold789 SAMTools SNP 200694 200694 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C9.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold789 SAMTools SNP 201242 201242 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 201293 201293 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C1%2C8%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.21%2C1.8e-05%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold789 SAMTools SNP 201714 201714 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold789 SAMTools SNP 202161 202161 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C20%2C12%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-05%2C3.7e-05%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 207046 207046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C26%2C31%3BMQ%3D50%3BFQ%3D-169%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C142%2C0:99 scaffold789 SAMTools SNP 207566 207566 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0039%2C0.33%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 207621 207621 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C28%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold789 SAMTools SNP 210698 210698 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.27%2C7.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold789 SAMTools SNP 210747 210747 164 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold789 SAMTools SNP 210762 210762 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold789 SAMTools SNP 210932 210932 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C24%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold789 SAMTools SNP 211033 211033 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 211093 211093 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold789 SAMTools SNP 211500 211500 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C81:62 scaffold789 SAMTools SNP 212012 212012 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold789 SAMTools SNP 212308 212308 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold789 SAMTools SNP 212311 212311 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C11%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C0.016%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold789 SAMTools SNP 212374 212374 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 212727 212727 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 212733 212733 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 213022 213022 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.27%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 213057 213057 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.28%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C232:99 scaffold789 SAMTools SNP 213089 213089 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 216777 216777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold789 SAMTools SNP 216808 216808 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 217132 217132 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C232:99 scaffold789 SAMTools SNP 217147 217147 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C12%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold789 SAMTools SNP 217338 217338 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold789 SAMTools SNP 217401 217401 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 217421 217421 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold789 SAMTools SNP 218794 218794 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold789 SAMTools SNP 218803 218803 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold789 SAMTools SNP 218943 218943 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 219127 219127 127 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C107:99 scaffold789 SAMTools SNP 219193 219193 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold789 SAMTools SNP 219329 219329 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C18%2C0:33 scaffold789 SAMTools SNP 219861 219861 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold789 SAMTools SNP 219903 219903 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 221645 221645 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 221665 221665 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold789 SAMTools SNP 221680 221680 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold789 SAMTools SNP 222116 222116 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.078%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C23:26 scaffold789 SAMTools SNP 226253 226253 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold789 SAMTools SNP 227896 227896 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold789 SAMTools SNP 230830 230830 8.44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold789 SAMTools SNP 230902 230902 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.1e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold789 SAMTools SNP 231121 231121 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold789 SAMTools SNP 235174 235174 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold789 SAMTools SNP 235833 235833 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C0%2C21%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold789 SAMTools SNP 235851 235851 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C69%3BMQ%3D50%3BFQ%3D-205%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold789 SAMTools SNP 237498 237498 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold789 SAMTools SNP 237509 237509 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 237512 237512 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 237551 237551 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 237557 237557 192 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold789 SAMTools SNP 241154 241154 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C6%2C0%3BMQ%3D48%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold789 SAMTools SNP 241163 241163 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C5%2C13%2C1%3BMQ%3D48%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold789 SAMTools SNP 241582 241582 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C26%2C3%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.004%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold789 SAMTools SNP 245200 245200 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C6%2C20%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1.8e-44%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold789 SAMTools SNP 245777 245777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.32%2C0.49%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold789 SAMTools SNP 245813 245813 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold789 SAMTools SNP 245825 245825 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.035%2C4.1e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold789 SAMTools SNP 246351 246351 88 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold789 SAMTools SNP 246775 246775 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C6%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold789 SAMTools SNP 246838 246838 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold789 SAMTools SNP 247179 247179 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold789 SAMTools SNP 247853 247853 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 247854 247854 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 247899 247899 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold789 SAMTools SNP 248228 248228 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C129:34 scaffold789 SAMTools SNP 248246 248246 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C38:41 scaffold789 SAMTools SNP 248287 248287 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold789 SAMTools SNP 248294 248294 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold789 SAMTools SNP 248942 248942 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold789 SAMTools SNP 248985 248985 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold789 SAMTools SNP 250496 250496 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold789 SAMTools SNP 250621 250621 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 251020 251020 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold789 SAMTools SNP 251034 251034 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold789 SAMTools SNP 251773 251773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold789 SAMTools SNP 252794 252794 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold789 SAMTools SNP 252829 252829 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold789 SAMTools SNP 253343 253343 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold789 SAMTools SNP 255728 255728 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 255737 255737 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 255787 255787 49 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.16%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C203:82 scaffold789 SAMTools SNP 255792 255792 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.32%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C220:61 scaffold789 SAMTools SNP 255795 255795 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C9%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.016%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C228:99 scaffold789 SAMTools SNP 256471 256471 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 256903 256903 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 258313 258313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 258373 258373 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold789 SAMTools SNP 260573 260573 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.46%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C219:56 scaffold789 SAMTools SNP 265140 265140 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold789 SAMTools SNP 268076 268076 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold789 SAMTools SNP 278740 278740 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C79%2C3%2C16%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold789 SAMTools SNP 280364 280364 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C2%2C2%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.62%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold789 SAMTools SNP 280448 280448 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold789 SAMTools SNP 287720 287720 49 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.53%2C0.28%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold789 SAMTools SNP 288598 288598 182 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C8%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C0.33%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold789 SAMTools SNP 288631 288631 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.28%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold789 SAMTools SNP 289001 289001 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C16%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold789 SAMTools SNP 290683 290683 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0261%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.015%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold789 SAMTools SNP 291086 291086 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0065%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold789 SAMTools SNP 291130 291130 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.37%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 291590 291590 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold789 SAMTools SNP 292086 292086 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold789 SAMTools SNP 292239 292239 12.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold789 SAMTools SNP 292752 292752 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C6%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 293033 293033 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C19%2C20%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0099%2C3.7e-11%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold789 SAMTools SNP 293042 293042 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C31%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 293048 293048 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C23%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 293231 293231 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C36%2C15%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 334875 334875 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold789 SAMTools SNP 336887 336887 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 337018 337018 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold789 SAMTools SNP 355878 355878 33.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C18%2C0:33 scaffold789 SAMTools SNP 389970 389970 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D29%3BFQ%3D5.82%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold789 SAMTools SNP 448570 448570 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 449788 449788 35.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.6243%3BAC1%3D1%3BDP4%3D3%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-23%3BPV4%3D1%2C0.17%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C4:7 scaffold789 SAMTools SNP 449877 449877 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C24%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.26%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C94:97 scaffold789 SAMTools SNP 450200 450200 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold789 SAMTools SNP 451242 451242 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold789 SAMTools SNP 454053 454053 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold789 SAMTools SNP 454630 454630 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold789 SAMTools SNP 454639 454639 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold789 SAMTools SNP 454948 454948 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold789 SAMTools SNP 454969 454969 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold789 SAMTools SNP 454978 454978 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold789 SAMTools SNP 455292 455292 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.18%2C0.038%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C234:56 scaffold789 SAMTools SNP 456005 456005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold789 SAMTools SNP 456026 456026 88 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.21%2C0.091%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C236:99 scaffold789 SAMTools SNP 456053 456053 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold789 SAMTools SNP 456428 456428 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold789 SAMTools SNP 456455 456455 210 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C16%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C202:99 scaffold789 SAMTools SNP 456477 456477 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold789 SAMTools SNP 458777 458777 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 458982 458982 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 459399 459399 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 460698 460698 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C42:45 scaffold789 SAMTools SNP 462995 462995 146 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold789 SAMTools SNP 464758 464758 47.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D235%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold789 SAMTools SNP 465210 465210 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C208:99 scaffold789 SAMTools SNP 465398 465398 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.48%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C226:88 scaffold789 SAMTools SNP 470702 470702 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 470747 470747 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 470950 470950 30.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold789 SAMTools SNP 470959 470959 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.2%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold789 SAMTools SNP 471404 471404 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C2%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold789 SAMTools SNP 471412 471412 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C6%2C17%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.16%2C0.097%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold789 SAMTools SNP 472646 472646 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.014%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold789 SAMTools SNP 472797 472797 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold789 SAMTools SNP 475201 475201 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C165:31 scaffold789 SAMTools SNP 475211 475211 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold789 SAMTools SNP 476498 476498 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold789 SAMTools SNP 477326 477326 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C122:99 scaffold789 SAMTools SNP 477327 477327 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.028%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold789 SAMTools SNP 477347 477347 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold789 SAMTools SNP 477763 477763 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 477920 477920 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold789 SAMTools SNP 480895 480895 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D186%2C4%2C106%2C1%3BMQ%3D42%3BFQ%3D169%3BPV4%3D0.66%2C1%2C0.034%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold789 SAMTools SNP 482586 482586 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D143%2C55%2C112%2C23%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.025%2C0.39%2C0.26%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 482639 482639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C112%2C6%2C52%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.1%2C0.3%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 484086 484086 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 485613 485613 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold789 SAMTools SNP 485685 485685 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold789 SAMTools SNP 488732 488732 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C24%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold789 SAMTools SNP 488944 488944 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold789 SAMTools SNP 489144 489144 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold789 SAMTools SNP 489902 489902 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.058%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C143:46 scaffold789 SAMTools SNP 490618 490618 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold789 SAMTools SNP 490682 490682 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.28%2C0.21%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold789 SAMTools SNP 490696 490696 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D27%3BFQ%3D9.42%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C40:38 scaffold789 SAMTools SNP 493483 493483 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold789 SAMTools SNP 494265 494265 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold789 SAMTools SNP 494605 494605 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C193:99 scaffold789 SAMTools SNP 494624 494624 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.21%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold789 SAMTools SNP 494630 494630 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold789 SAMTools SNP 495236 495236 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 80736 80736 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 80876 80876 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 116059 116059 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold79 SAMTools SNP 116430 116430 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C39%2C0:75 scaffold79 SAMTools SNP 116648 116648 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 116779 116779 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 116818 116818 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 117043 117043 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D6.2%3BPV4%3D1%2C1%2C0.039%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C204:31 scaffold79 SAMTools SNP 117089 117089 67 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C4%3BMQ%3D43%3BFQ%3D70%3BPV4%3D0.49%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C194:99 scaffold79 SAMTools SNP 119830 119830 52.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D0.33%2C0.21%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C2%2C0:5 scaffold79 SAMTools SNP 120270 120270 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C7.8e-07%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C71:39 scaffold79 SAMTools SNP 121556 121556 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D46%3BFQ%3D124%3BPV4%3D1%2C6.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C192:99 scaffold79 SAMTools SNP 127703 127703 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 127704 127704 20.1 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 128085 128085 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C11%2C21%2C1%3BMQ%3D38%3BFQ%3D102%3BPV4%3D0.041%2C1%2C9.8e-06%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold79 SAMTools SNP 134446 134446 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold79 SAMTools SNP 134476 134476 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 136014 136014 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 136765 136765 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold79 SAMTools SNP 136825 136825 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold79 SAMTools SNP 137656 137656 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 137720 137720 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.22%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C38:41 scaffold79 SAMTools SNP 138960 138960 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C27%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold79 SAMTools SNP 139903 139903 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 140682 140682 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold79 SAMTools SNP 141340 141340 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.27%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold79 SAMTools SNP 141358 141358 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 141456 141456 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 149809 149809 39.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold79 SAMTools SNP 153369 153369 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 153379 153379 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 174677 174677 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C21%2C0:39 scaffold79 SAMTools SNP 176953 176953 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold79 SAMTools SNP 177023 177023 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C9%3BMQ%3D48%3BFQ%3D-5.45%3BPV4%3D0.0014%2C1%2C0.26%2C1.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C23:26 scaffold79 SAMTools SNP 177055 177055 24.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold79 SAMTools SNP 177194 177194 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C9%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold79 SAMTools SNP 177478 177478 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 177583 177583 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C2%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 178041 178041 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold79 SAMTools SNP 178276 178276 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 178283 178283 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 178292 178292 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 178301 178301 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold79 SAMTools SNP 178331 178331 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold79 SAMTools SNP 178611 178611 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C110:67 scaffold79 SAMTools SNP 179158 179158 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C49:49 scaffold79 SAMTools SNP 179164 179164 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 179412 179412 95.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C15%2C0:27 scaffold79 SAMTools SNP 179420 179420 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C69:52 scaffold79 SAMTools SNP 179916 179916 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold79 SAMTools SNP 179942 179942 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold79 SAMTools SNP 180405 180405 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold79 SAMTools SNP 180728 180728 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold79 SAMTools SNP 181890 181890 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 181902 181902 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 182140 182140 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 182188 182188 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 182260 182260 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 182281 182281 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 183846 183846 72.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C12%2C0:21 scaffold79 SAMTools SNP 184015 184015 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C45%2C0:87 scaffold79 SAMTools SNP 197339 197339 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold79 SAMTools SNP 197771 197771 3.41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold79 SAMTools SNP 197876 197876 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 201406 201406 196 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C27%2C0:51 scaffold79 SAMTools SNP 201787 201787 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold79 SAMTools SNP 201874 201874 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 204271 204271 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 204440 204440 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold79 SAMTools SNP 204659 204659 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 204719 204719 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 205036 205036 37.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold79 SAMTools SNP 205179 205179 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold79 SAMTools SNP 205960 205960 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold79 SAMTools SNP 205975 205975 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 206417 206417 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold79 SAMTools SNP 206565 206565 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold79 SAMTools SNP 207001 207001 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C99:99 scaffold79 SAMTools SNP 216583 216583 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold79 SAMTools SNP 216607 216607 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 218032 218032 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold79 SAMTools SNP 218068 218068 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold79 SAMTools SNP 218246 218246 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 221788 221788 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 225814 225814 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold79 SAMTools SNP 229428 229428 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold79 SAMTools SNP 239916 239916 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold79 SAMTools SNP 243259 243259 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold79 SAMTools SNP 243414 243414 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 257966 257966 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold79 SAMTools SNP 258831 258831 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold79 SAMTools SNP 268511 268511 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold79 SAMTools SNP 295301 295301 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D3.55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C28:31 scaffold79 SAMTools SNP 295305 295305 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 298274 298274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C29%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold79 SAMTools SNP 300509 300509 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 301408 301408 94.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C18%2C0:33 scaffold79 SAMTools SNP 313414 313414 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold79 SAMTools SNP 314982 314982 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.16%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold79 SAMTools SNP 315312 315312 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold79 SAMTools SNP 320166 320166 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 322651 322651 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 323646 323646 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold79 SAMTools SNP 326495 326495 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C9.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold79 SAMTools SNP 326563 326563 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 327794 327794 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold79 SAMTools SNP 327866 327866 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold79 SAMTools SNP 328373 328373 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 329286 329286 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 333660 333660 18.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold79 SAMTools SNP 338217 338217 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold79 SAMTools SNP 339245 339245 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold79 SAMTools SNP 339266 339266 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold79 SAMTools SNP 340337 340337 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C7.7e-05%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold79 SAMTools SNP 341160 341160 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold79 SAMTools SNP 341286 341286 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C33%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold79 SAMTools SNP 343077 343077 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold79 SAMTools SNP 343137 343137 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C30%2C0:57 scaffold79 SAMTools SNP 343218 343218 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold79 SAMTools SNP 343423 343423 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold79 SAMTools SNP 343492 343492 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold79 SAMTools SNP 343968 343968 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold79 SAMTools SNP 344289 344289 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C20%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold79 SAMTools SNP 344974 344974 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold79 SAMTools SNP 345061 345061 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C10%3BMQ%3D49%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold79 SAMTools SNP 346599 346599 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold79 SAMTools SNP 346638 346638 166 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C21%2C0:39 scaffold79 SAMTools SNP 346737 346737 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C69%2C0:99 scaffold79 SAMTools SNP 347502 347502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold79 SAMTools SNP 347607 347607 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold79 SAMTools SNP 356399 356399 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C12%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C129%2C0:99 scaffold79 SAMTools SNP 358283 358283 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C0%2C9%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.3%2C1%2C1%2C9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold79 SAMTools SNP 361356 361356 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold79 SAMTools SNP 367431 367431 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 368871 368871 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-80%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C53%2C0:99 scaffold79 SAMTools SNP 374207 374207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C45%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold79 SAMTools SNP 375811 375811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C38%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold79 SAMTools SNP 376259 376259 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C28%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold79 SAMTools SNP 376352 376352 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold79 SAMTools SNP 376668 376668 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold79 SAMTools SNP 376725 376725 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 377137 377137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 377219 377219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C119%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 381715 381715 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold79 SAMTools SNP 381760 381760 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold79 SAMTools SNP 381838 381838 198 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C126%2C0:99 scaffold79 SAMTools SNP 381895 381895 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 381913 381913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold79 SAMTools SNP 382492 382492 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 382589 382589 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 382944 382944 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold79 SAMTools SNP 382968 382968 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold79 SAMTools SNP 384771 384771 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C54%2C0:99 scaffold79 SAMTools SNP 384841 384841 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold79 SAMTools SNP 384861 384861 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold79 SAMTools SNP 387767 387767 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold79 SAMTools SNP 387930 387930 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C22%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold79 SAMTools SNP 388364 388364 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D9%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold79 SAMTools SNP 388990 388990 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold79 SAMTools SNP 401450 401450 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 401477 401477 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C232:95 scaffold79 SAMTools SNP 402200 402200 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C13%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold79 SAMTools SNP 402272 402272 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold79 SAMTools SNP 402659 402659 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.25%2C0.099%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold79 SAMTools SNP 402671 402671 199 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23:45 scaffold79 SAMTools SNP 402725 402725 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.49%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold79 SAMTools SNP 403049 403049 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.49%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold79 SAMTools SNP 403070 403070 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold79 SAMTools SNP 403088 403088 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 403106 403106 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold79 SAMTools SNP 403115 403115 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.066%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold79 SAMTools SNP 403118 403118 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.055%2C0.11%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold79 SAMTools SNP 403467 403467 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C176%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 403539 403539 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C182%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 404143 404143 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C121%2C0%2C56%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold79 SAMTools SNP 404188 404188 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C56%3BMQ%3D50%3BFQ%3D186%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold79 SAMTools SNP 407405 407405 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold79 SAMTools SNP 408076 408076 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.22%2C9.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C235:52 scaffold79 SAMTools SNP 408144 408144 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C8%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold79 SAMTools SNP 408521 408521 36 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold79 SAMTools SNP 408872 408872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.19%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold79 SAMTools SNP 411178 411178 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.45%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold79 SAMTools SNP 411187 411187 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold79 SAMTools SNP 411275 411275 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold79 SAMTools SNP 411287 411287 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold79 SAMTools SNP 411927 411927 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 412430 412430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold79 SAMTools SNP 412971 412971 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold79 SAMTools SNP 414383 414383 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C1%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold79 SAMTools SNP 418480 418480 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold79 SAMTools SNP 419933 419933 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold79 SAMTools SNP 420300 420300 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 421975 421975 123 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.17%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C104:99 scaffold79 SAMTools SNP 422328 422328 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold79 SAMTools SNP 422352 422352 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold79 SAMTools SNP 422490 422490 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.19%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 426257 426257 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 426386 426386 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold79 SAMTools SNP 427314 427314 48.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold79 SAMTools SNP 430186 430186 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold79 SAMTools SNP 430348 430348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C4%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold79 SAMTools SNP 430368 430368 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold79 SAMTools SNP 433770 433770 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold79 SAMTools SNP 434652 434652 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold79 SAMTools SNP 434676 434676 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold79 SAMTools SNP 434981 434981 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold79 SAMTools SNP 434987 434987 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 436623 436623 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold79 SAMTools SNP 437426 437426 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 437483 437483 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold79 SAMTools SNP 437668 437668 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold79 SAMTools SNP 437925 437925 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 439348 439348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 439542 439542 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 439587 439587 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 439602 439602 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold79 SAMTools SNP 439613 439613 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold79 SAMTools SNP 439942 439942 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 440608 440608 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 440622 440622 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold79 SAMTools SNP 440720 440720 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold79 SAMTools SNP 440783 440783 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 441215 441215 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 441304 441304 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold79 SAMTools SNP 441368 441368 80 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C76:79 scaffold79 SAMTools SNP 443821 443821 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold79 SAMTools SNP 443872 443872 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold79 SAMTools SNP 444667 444667 115 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold79 SAMTools SNP 449223 449223 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold79 SAMTools SNP 449250 449250 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold79 SAMTools SNP 449262 449262 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 449350 449350 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D23%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C248:34 scaffold79 SAMTools SNP 503683 503683 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 503718 503718 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 504487 504487 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C40%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.0011%2C3.7e-65%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold79 SAMTools SNP 504758 504758 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 505835 505835 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.00025%2C0.0016%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C235:93 scaffold79 SAMTools SNP 506246 506246 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.4%2C0.35%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C173:99 scaffold79 SAMTools SNP 507355 507355 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold79 SAMTools SNP 508376 508376 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C214:99 scaffold79 SAMTools SNP 509103 509103 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C204:99 scaffold79 SAMTools SNP 509118 509118 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C149:99 scaffold79 SAMTools SNP 509420 509420 137 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C12%2C0:21 scaffold79 SAMTools SNP 509459 509459 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold79 SAMTools SNP 509513 509513 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 510144 510144 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 510177 510177 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 510431 510431 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 534575 534575 22.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold79 SAMTools SNP 538784 538784 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold79 SAMTools SNP 538975 538975 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold79 SAMTools SNP 539209 539209 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold79 SAMTools SNP 539281 539281 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C13%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.052%2C4.4e-07%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 542513 542513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold79 SAMTools SNP 543116 543116 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold79 SAMTools SNP 544468 544468 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C4%3BMQ%3D47%3BFQ%3D158%3BPV4%3D0.6%2C0.44%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold79 SAMTools SNP 546395 546395 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold79 SAMTools SNP 546403 546403 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold79 SAMTools SNP 550477 550477 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.44%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C176:55 scaffold79 SAMTools SNP 550501 550501 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold79 SAMTools SNP 550513 550513 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.3%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold79 SAMTools SNP 550525 550525 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.44%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold79 SAMTools SNP 550528 550528 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.62%2C0.0026%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold79 SAMTools SNP 551110 551110 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C5%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold79 SAMTools SNP 551783 551783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 553407 553407 46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C106:79 scaffold79 SAMTools SNP 577725 577725 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 577764 577764 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 578371 578371 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 578534 578534 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 581820 581820 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 581823 581823 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 581848 581848 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 582424 582424 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 587879 587879 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 587900 587900 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 600226 600226 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.5%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold79 SAMTools SNP 600973 600973 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold79 SAMTools SNP 600987 600987 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold79 SAMTools SNP 603140 603140 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 603167 603167 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold79 SAMTools SNP 603185 603185 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.019%2C1.4e-06%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold79 SAMTools SNP 603763 603763 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold79 SAMTools SNP 603777 603777 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold79 SAMTools SNP 604242 604242 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C2%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold79 SAMTools SNP 604713 604713 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C16%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold79 SAMTools SNP 605188 605188 107 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C91%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C255%2C0:99 scaffold79 SAMTools SNP 605464 605464 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1.4e-18%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C214:36 scaffold79 SAMTools SNP 605512 605512 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C36%2C0:69 scaffold79 SAMTools SNP 605554 605554 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C12%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.044%2C3.9e-38%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold79 SAMTools SNP 605779 605779 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D6%2C0%2C8%2C49%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D4.4e-05%2C5.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C34:37 scaffold79 SAMTools SNP 605815 605815 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C0%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold79 SAMTools SNP 606038 606038 35 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0083%2C1%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C183:68 scaffold79 SAMTools SNP 607293 607293 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold79 SAMTools SNP 607329 607329 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold79 SAMTools SNP 607401 607401 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 607422 607422 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold79 SAMTools SNP 608930 608930 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold79 SAMTools SNP 608951 608951 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C175:60 scaffold79 SAMTools SNP 608954 608954 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C162:74 scaffold79 SAMTools SNP 609261 609261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold79 SAMTools SNP 609321 609321 89 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.43%2C1%2C3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold79 SAMTools SNP 609339 609339 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold79 SAMTools SNP 626180 626180 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 638392 638392 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold79 SAMTools SNP 638507 638507 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold79 SAMTools SNP 638822 638822 83.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D444%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C21%2C0:39 scaffold79 SAMTools SNP 638858 638858 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C225%2C62%2C19%3BMQ%3D50%3BFQ%3D62%3BPV4%3D4.8e-13%2C5.9e-89%2C1%2C2.3e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold79 SAMTools SNP 639367 639367 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C6%2C119%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 639376 639376 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C3%2C91%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 639391 639391 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C23%2C61%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 639472 639472 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C39%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold79 SAMTools SNP 639919 639919 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C191%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 640027 640027 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C16%2C7%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C6.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold79 SAMTools SNP 640482 640482 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C35%3BMQ%3D50%3BFQ%3D-95%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C68%2C0:99 scaffold79 SAMTools SNP 640880 640880 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D338%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D182%2C18%2C47%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C1%2C1%2C6.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 640982 640982 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 641009 641009 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C111%2C247%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.31%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 641396 641396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D138%2C77%2C131%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 641462 641462 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D188%2C49%2C108%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 641947 641947 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D603%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C150%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 641985 641985 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C214%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 642426 642426 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold79 SAMTools SNP 642529 642529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold79 SAMTools SNP 643410 643410 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C60%2C5%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 643461 643461 4.11 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold79 SAMTools SNP 643494 643494 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 645130 645130 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.27%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C232:62 scaffold79 SAMTools SNP 645195 645195 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold79 SAMTools SNP 645531 645531 193 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C180:99 scaffold79 SAMTools SNP 645540 645540 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 645542 645542 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 646318 646318 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C7%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold79 SAMTools SNP 646347 646347 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 646390 646390 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold79 SAMTools SNP 650314 650314 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C22%2C4%2C9%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.064%2C0.058%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold79 SAMTools SNP 651761 651761 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C0%2C50%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold79 SAMTools SNP 656057 656057 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 656591 656591 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold79 SAMTools SNP 656593 656593 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold79 SAMTools SNP 656747 656747 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C13%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.015%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold79 SAMTools SNP 658382 658382 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C32:35 scaffold79 SAMTools SNP 659729 659729 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.019%2C2.8e-06%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C222:72 scaffold79 SAMTools SNP 660285 660285 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C27%2C0:51 scaffold79 SAMTools SNP 660354 660354 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold79 SAMTools SNP 660381 660381 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 660396 660396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold79 SAMTools SNP 660652 660652 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D205%3BPV4%3D4.8e-09%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold79 SAMTools SNP 660701 660701 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold79 SAMTools SNP 660716 660716 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C0%2C8%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.014%2C1%2C1%2C0.00014;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold79 SAMTools SNP 660921 660921 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C10%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.38%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold79 SAMTools SNP 660984 660984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C10%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.089%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold79 SAMTools SNP 660993 660993 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.0046%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold79 SAMTools SNP 661293 661293 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold79 SAMTools SNP 661344 661344 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C15%2C0:27 scaffold79 SAMTools SNP 662333 662333 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.32%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 662434 662434 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C23%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 663091 663091 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 663878 663878 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 663924 663924 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold79 SAMTools SNP 663994 663994 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold79 SAMTools SNP 667660 667660 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 667843 667843 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 669903 669903 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.079%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 669924 669924 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C7%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 672776 672776 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 673193 673193 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 673304 673304 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 674460 674460 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 675733 675733 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.31%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold79 SAMTools SNP 675763 675763 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 675871 675871 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold79 SAMTools SNP 675877 675877 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold79 SAMTools SNP 676396 676396 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 676402 676402 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold79 SAMTools SNP 676406 676406 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 676959 676959 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 678220 678220 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 678421 678421 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 679016 679016 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold79 SAMTools SNP 679059 679059 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold79 SAMTools SNP 680661 680661 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 680700 680700 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 681079 681079 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.24%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C218:99 scaffold79 SAMTools SNP 681088 681088 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C216:99 scaffold79 SAMTools SNP 681133 681133 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C153:77 scaffold79 SAMTools SNP 681163 681163 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold79 SAMTools SNP 681519 681519 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold79 SAMTools SNP 681700 681700 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 682223 682223 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C18%2C0:33 scaffold79 SAMTools SNP 682241 682241 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold79 SAMTools SNP 683061 683061 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C171:72 scaffold79 SAMTools SNP 683094 683094 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C111:39 scaffold79 SAMTools SNP 684348 684348 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C35%3BMQ%3D50%3BFQ%3D-85%3BPV4%3D1%2C7.8e-08%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C58%2C0:99 scaffold79 SAMTools SNP 685047 685047 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 685089 685089 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 685462 685462 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold79 SAMTools SNP 685755 685755 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 687802 687802 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 687817 687817 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold79 SAMTools SNP 687856 687856 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold79 SAMTools SNP 688261 688261 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold79 SAMTools SNP 689120 689120 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 689358 689358 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C36%2C0:69 scaffold79 SAMTools SNP 690044 690044 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold79 SAMTools SNP 690073 690073 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold79 SAMTools SNP 690076 690076 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C0.42%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C102:99 scaffold79 SAMTools SNP 690761 690761 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold79 SAMTools SNP 698877 698877 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.00065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C234:68 scaffold79 SAMTools SNP 698904 698904 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold79 SAMTools SNP 698919 698919 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold79 SAMTools SNP 699149 699149 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold79 SAMTools SNP 699561 699561 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C17%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C232:99 scaffold79 SAMTools SNP 699618 699618 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 699627 699627 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 700156 700156 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 700171 700171 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold79 SAMTools SNP 700204 700204 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold79 SAMTools SNP 700442 700442 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 700459 700459 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 700556 700556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 700571 700571 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold79 SAMTools SNP 700589 700589 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.0073;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold79 SAMTools SNP 701903 701903 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold79 SAMTools SNP 701951 701951 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C119:99 scaffold79 SAMTools SNP 702160 702160 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 702501 702501 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 702729 702729 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold79 SAMTools SNP 703317 703317 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.47%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold79 SAMTools SNP 703329 703329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold79 SAMTools SNP 708508 708508 142 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C51%2C0:99 scaffold79 SAMTools SNP 708628 708628 58.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold79 SAMTools SNP 709100 709100 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold79 SAMTools SNP 746312 746312 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold79 SAMTools SNP 746451 746451 47.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C18%2C0:33 scaffold79 SAMTools SNP 746491 746491 22 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C85:55 scaffold79 SAMTools SNP 746982 746982 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C9%2C0:16 scaffold79 SAMTools SNP 747267 747267 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold79 SAMTools SNP 752255 752255 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold79 SAMTools SNP 752973 752973 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold79 SAMTools SNP 753623 753623 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.13%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold79 SAMTools SNP 753635 753635 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold79 SAMTools SNP 753650 753650 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold79 SAMTools SNP 753665 753665 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold79 SAMTools SNP 759521 759521 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0417%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D2%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold79 SAMTools SNP 760778 760778 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C103%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 760811 760811 217 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C6%2C40%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold79 SAMTools SNP 761007 761007 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C73%2C17%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 764209 764209 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 764211 764211 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.46%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold79 SAMTools SNP 768564 768564 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold79 SAMTools SNP 768593 768593 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 775184 775184 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold79 SAMTools SNP 776434 776434 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold79 SAMTools SNP 776456 776456 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold79 SAMTools SNP 776479 776479 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 776941 776941 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C98:49 scaffold79 SAMTools SNP 777436 777436 6.99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-4.93%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C24:28 scaffold79 SAMTools SNP 777694 777694 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold79 SAMTools SNP 777817 777817 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C30%2C0:57 scaffold79 SAMTools SNP 781794 781794 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C7%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold79 SAMTools SNP 781854 781854 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C29%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold79 SAMTools SNP 782498 782498 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C22%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold79 SAMTools SNP 782558 782558 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold79 SAMTools SNP 783039 783039 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C40:43 scaffold79 SAMTools SNP 783093 783093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold79 SAMTools SNP 784219 784219 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D331%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C245%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 785806 785806 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C30%2C57%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.072%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 785809 785809 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C23%2C54%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 785817 785817 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C28%2C8%2C1%3BMQ%3D48%3BFQ%3D123%3BPV4%3D0.0019%2C1%2C0.36%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold79 SAMTools SNP 785822 785822 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D49%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold79 SAMTools SNP 785823 785823 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D49%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold79 SAMTools SNP 787105 787105 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 787735 787735 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C53%2C3%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 787744 787744 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 787753 787753 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C44%2C8%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 788880 788880 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C287%2C81%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 791918 791918 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 791928 791928 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 792860 792860 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold79 SAMTools SNP 792965 792965 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C19%2C10%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 792968 792968 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 792971 792971 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C66%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold79 SAMTools SNP 797199 797199 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C20%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.5%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold79 SAMTools SNP 797222 797222 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C9%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C238:99 scaffold79 SAMTools SNP 797247 797247 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold79 SAMTools SNP 801504 801504 194 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.068%2C0.00011%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold79 SAMTools SNP 802960 802960 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold79 SAMTools SNP 803433 803433 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C3%2C7%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.35%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold79 SAMTools SNP 803441 803441 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold79 SAMTools SNP 803493 803493 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold79 SAMTools SNP 807288 807288 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C1%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 810695 810695 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold79 SAMTools SNP 811755 811755 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold79 SAMTools SNP 812859 812859 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold79 SAMTools SNP 813518 813518 60.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C18%2C0:33 scaffold79 SAMTools SNP 813537 813537 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.057%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C110:64 scaffold79 SAMTools SNP 817957 817957 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C13%2C11%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.11%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold79 SAMTools SNP 818011 818011 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C23%2C12%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.034%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold79 SAMTools SNP 818638 818638 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 818656 818656 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold79 SAMTools SNP 819164 819164 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 819194 819194 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 840117 840117 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 840947 840947 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold79 SAMTools SNP 842388 842388 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 850256 850256 39.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold79 SAMTools SNP 850420 850420 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C25%2C65%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-08%2C0.24%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 851025 851025 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C82%2C7%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 851046 851046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C26%2C121%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 851518 851518 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C32%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C0.00087%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 851598 851598 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C20%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 852617 852617 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C32%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold79 SAMTools SNP 852671 852671 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold79 SAMTools SNP 852683 852683 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold79 SAMTools SNP 853864 853864 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.3%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 854275 854275 221 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C33%2C0:63 scaffold79 SAMTools SNP 862770 862770 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold79 SAMTools SNP 871416 871416 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold79 SAMTools SNP 871425 871425 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold79 SAMTools SNP 874366 874366 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C18%2C0:33 scaffold79 SAMTools SNP 875088 875088 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 875106 875106 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold79 SAMTools SNP 875112 875112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 875875 875875 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 877167 877167 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C228:99 scaffold79 SAMTools SNP 877176 877176 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C213:99 scaffold79 SAMTools SNP 877938 877938 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 878747 878747 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold79 SAMTools SNP 878750 878750 137 . . REF=T;ALT=A,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C47%2C35%2C164%2C0%2C161:21 scaffold79 SAMTools SNP 880203 880203 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C2%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold79 SAMTools SNP 880230 880230 150 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold79 SAMTools SNP 880751 880751 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C14%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.023%2C0.28%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold79 SAMTools SNP 880942 880942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C27%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold79 SAMTools SNP 882779 882779 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.078%2C1%2C1%2C6.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold79 SAMTools SNP 882849 882849 205 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C13%2C7%2C9%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.012%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold79 SAMTools SNP 882879 882879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C57%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 883331 883331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C58%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold79 SAMTools SNP 883334 883334 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C57%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold79 SAMTools SNP 883840 883840 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold79 SAMTools SNP 889330 889330 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C21%2C0:39 scaffold79 SAMTools SNP 889424 889424 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C27%2C10%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.25%2C2e-46%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold79 SAMTools SNP 889499 889499 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C48%2C11%2C31%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.32%2C3e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold79 SAMTools SNP 889698 889698 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C44%3BMQ%3D50%3BFQ%3D59.3%3BPV4%3D4.9e-09%2C5e-43%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C91:89 scaffold79 SAMTools SNP 889701 889701 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C11%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D4.9e-09%2C0.00093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold79 SAMTools SNP 889754 889754 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C88%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.039%2C1%2C1%2C9.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C190:99 scaffold79 SAMTools SNP 889773 889773 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 890184 890184 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C12%2C0%2C21%3BMQ%3D50%3BFQ%3D132%3BPV4%3D1.6e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold79 SAMTools SNP 890252 890252 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C26%2C46%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.015%2C3.3e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C69:72 scaffold79 SAMTools SNP 890687 890687 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C200%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 890910 890910 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C49%2C40%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 891372 891372 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C1%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.18%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 892076 892076 195 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold79 SAMTools SNP 892079 892079 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold79 SAMTools SNP 892109 892109 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold79 SAMTools SNP 892139 892139 55.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold79 SAMTools SNP 904543 904543 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C38:41 scaffold79 SAMTools SNP 904762 904762 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold79 SAMTools SNP 904785 904785 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold79 SAMTools SNP 906836 906836 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold79 SAMTools SNP 906874 906874 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.57%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold79 SAMTools SNP 908089 908089 226 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C4%2C65%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1e-06%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold79 SAMTools SNP 908125 908125 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C59%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C46:49 scaffold79 SAMTools SNP 908176 908176 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C8%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold79 SAMTools SNP 908732 908732 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D316%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D126%2C30%2C140%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 909113 909113 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.63%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold79 SAMTools SNP 909131 909131 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold79 SAMTools SNP 909396 909396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C80%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 909905 909905 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C47%2C20%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.0062%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 909989 909989 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C39%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold79 SAMTools SNP 910901 910901 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold79 SAMTools SNP 910903 910903 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold79 SAMTools SNP 910995 910995 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold79 SAMTools SNP 911863 911863 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold79 SAMTools SNP 911902 911902 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 912308 912308 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C31%2C31%2C30%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0044%2C3.7e-78%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold79 SAMTools SNP 912500 912500 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D87.8%3BPV4%3D1%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C121:99 scaffold79 SAMTools SNP 912536 912536 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold79 SAMTools SNP 913313 913313 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C103%2C0%2C32%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.2%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold79 SAMTools SNP 913325 913325 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C66%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold79 SAMTools SNP 913346 913346 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C41%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C0.34%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C144:99 scaffold79 SAMTools SNP 913421 913421 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold79 SAMTools SNP 913424 913424 75 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold79 SAMTools SNP 913700 913700 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C173:53 scaffold79 SAMTools SNP 913729 913729 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C9%2C0:16 scaffold79 SAMTools SNP 914708 914708 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C28%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.061%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 914951 914951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C23%2C20%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 916608 916608 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold79 SAMTools SNP 917441 917441 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C18%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.15%2C7.3e-09%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C140:99 scaffold79 SAMTools SNP 917513 917513 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C72%2C0:99 scaffold79 SAMTools SNP 917537 917537 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C33%2C0:63 scaffold79 SAMTools SNP 918127 918127 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold79 SAMTools SNP 919622 919622 34.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold79 SAMTools SNP 920427 920427 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D77.9%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C105:99 scaffold79 SAMTools SNP 920883 920883 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold79 SAMTools SNP 927423 927423 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C0.18%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C246:99 scaffold79 SAMTools SNP 927575 927575 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C170%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold79 SAMTools SNP 927614 927614 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C16%2C54%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5e-05%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 928347 928347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C65%2C3%2C91%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 928936 928936 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C22%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 929070 929070 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C9%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.0022%2C1%2C7.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold79 SAMTools SNP 930237 930237 61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C44%2C0%2C33%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.079%2C5.8e-12%2C1%2C1.4e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold79 SAMTools SNP 930602 930602 57.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C18%2C0:33 scaffold79 SAMTools SNP 930636 930636 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold79 SAMTools SNP 932045 932045 70 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C14%2C9%2C12%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.17%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold79 SAMTools SNP 932492 932492 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold79 SAMTools SNP 933045 933045 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold79 SAMTools SNP 933391 933391 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 933418 933418 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold79 SAMTools SNP 933919 933919 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold79 SAMTools SNP 933929 933929 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold79 SAMTools SNP 933954 933954 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C140:99 scaffold79 SAMTools SNP 933957 933957 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold79 SAMTools SNP 934192 934192 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold79 SAMTools SNP 934220 934220 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold79 SAMTools SNP 934353 934353 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C5e-23%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C213:56 scaffold790 SAMTools SNP 15228 15228 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold790 SAMTools SNP 15239 15239 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold790 SAMTools SNP 18779 18779 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold790 SAMTools SNP 31660 31660 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C21%2C0:35 scaffold790 SAMTools SNP 46089 46089 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold790 SAMTools SNP 48514 48514 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold790 SAMTools SNP 48557 48557 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold790 SAMTools SNP 53163 53163 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C3.9e-07%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold790 SAMTools SNP 54404 54404 10.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold790 SAMTools SNP 56253 56253 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold790 SAMTools SNP 56995 56995 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.018%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C74:77 scaffold790 SAMTools SNP 62261 62261 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C2%2C193:88 scaffold790 SAMTools SNP 62732 62732 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C49%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold790 SAMTools SNP 63902 63902 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D106%2C25%2C59%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 65149 65149 34.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D260%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold790 SAMTools SNP 65548 65548 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C36%2C15%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.81%2C5.9e-67%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold790 SAMTools SNP 83643 83643 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold790 SAMTools SNP 119945 119945 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold790 SAMTools SNP 178033 178033 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold790 SAMTools SNP 179434 179434 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold790 SAMTools SNP 188528 188528 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C88%2C11%3BMQ%3D50%3BFQ%3D-275%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C248%2C0:99 scaffold790 SAMTools SNP 191140 191140 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D366%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C172%2C21%2C159%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 191242 191242 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C19%2C41%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 191635 191635 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D584%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D288%2C34%2C215%2C31%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.51%2C1.2e-240%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold790 SAMTools SNP 192325 192325 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C115%2C3%2C90%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 192340 192340 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C148%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 192550 192550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D626%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C346%2C1%2C207%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 192568 192568 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C295%2C1%2C208%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 193365 193365 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold790 SAMTools SNP 199032 199032 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D595%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D148%2C145%2C133%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 200548 200548 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C38%2C35%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D2.4e-05%2C0.3%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold790 SAMTools SNP 201285 201285 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D557%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C217%2C40%2C230%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C4.5e-213%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 201966 201966 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C66%2C2%2C35%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.0013%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold790 SAMTools SNP 201972 201972 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C25%2C39%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.083%2C0.1%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 202251 202251 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C82%2C89%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.48%2C0.36%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 203071 203071 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 203186 203186 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 203194 203194 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C58%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.034%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 204845 204845 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold790 SAMTools SNP 205934 205934 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C238:99 scaffold790 SAMTools SNP 205968 205968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 206581 206581 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C2%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold790 SAMTools SNP 206653 206653 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C71%2C1%2C24%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.26%2C4.8e-37%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C247:99 scaffold790 SAMTools SNP 206679 206679 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C229%2C0:99 scaffold790 SAMTools SNP 264005 264005 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold790 SAMTools SNP 264502 264502 6.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold790 SAMTools SNP 280678 280678 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold790 SAMTools SNP 285141 285141 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C80%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 285643 285643 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C13%2C31%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1e-08%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 285655 285655 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C37%2C98%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.00047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 285664 285664 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C53%2C37%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 285712 285712 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C116%2C65%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.5e-30%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 286166 286166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 286984 286984 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 286987 286987 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C66%2C22%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D5.4e-11%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold790 SAMTools SNP 287024 287024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C43%3BMQ%3D50%3BFQ%3D-107%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C80%2C0:99 scaffold790 SAMTools SNP 287042 287042 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C88%2C13%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 287060 287060 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C18%2C3%2C22%3BMQ%3D50%3BFQ%3D141%3BPV4%3D4.6e-12%2C0.0033%2C1%2C3e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold790 SAMTools SNP 288568 288568 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C308%2C41%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold790 SAMTools SNP 292247 292247 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D699%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C251%2C30%2C366%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 292777 292777 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D598%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D212%2C32%2C304%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 292828 292828 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D375%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C152%2C45%2C127%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.91%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 293464 293464 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1172%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D718%2C59%2C333%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C6.7e-05%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 293690 293690 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1107%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D303%2C60%2C691%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 293708 293708 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D464%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C160%2C62%2C186%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold790 SAMTools SNP 298967 298967 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C2.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C74:47 scaffold793 SAMTools SNP 4989 4989 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 5084 5084 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 5086 5086 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 13212 13212 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 13264 13264 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 13325 13325 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 13359 13359 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold793 SAMTools SNP 13382 13382 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold793 SAMTools SNP 28328 28328 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C122%2C19%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold793 SAMTools SNP 28476 28476 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold793 SAMTools SNP 28511 28511 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold793 SAMTools SNP 30440 30440 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0198%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold793 SAMTools SNP 31502 31502 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C169:99 scaffold793 SAMTools SNP 32682 32682 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C27%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold793 SAMTools SNP 33071 33071 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 37530 37530 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C27%2C0:48 scaffold793 SAMTools SNP 37698 37698 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold793 SAMTools SNP 38683 38683 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold793 SAMTools SNP 38686 38686 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold793 SAMTools SNP 39586 39586 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold793 SAMTools SNP 39592 39592 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold793 SAMTools SNP 39599 39599 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold793 SAMTools SNP 39601 39601 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold793 SAMTools SNP 41549 41549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C3%2C49%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 41598 41598 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C50%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C4.9e-105%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold793 SAMTools SNP 44505 44505 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold793 SAMTools SNP 45017 45017 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C96%2C25%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.12%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 58977 58977 41.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold793 SAMTools SNP 74760 74760 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 85943 85943 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold793 SAMTools SNP 104019 104019 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C105%2C2%2C47%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.041%2C0.015%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold793 SAMTools SNP 104031 104031 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C68%2C4%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 104034 104034 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C116%2C2%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 104268 104268 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.067%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold793 SAMTools SNP 105007 105007 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C9%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.42%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 105844 105844 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 105886 105886 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold793 SAMTools SNP 113233 113233 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0088;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold793 SAMTools SNP 115767 115767 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.054%2C2.3e-06%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold793 SAMTools SNP 116725 116725 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 130830 130830 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold793 SAMTools SNP 179732 179732 119 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold793 SAMTools SNP 189797 189797 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C32%2C49%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 189831 189831 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C69%2C0%2C32%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1.3e-07%2C2.6e-20%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold793 SAMTools SNP 192239 192239 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 193363 193363 221 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C30%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.00046%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C246:99 scaffold793 SAMTools SNP 196699 196699 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold793 SAMTools SNP 198107 198107 214 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C25%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.11%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold793 SAMTools SNP 198117 198117 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C20%2C29%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.24%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 198161 198161 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C9%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 198375 198375 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 199141 199141 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.058%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold793 SAMTools SNP 202525 202525 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 202540 202540 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.3%2C1%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold793 SAMTools SNP 202552 202552 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold793 SAMTools SNP 202624 202624 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold793 SAMTools SNP 207355 207355 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C154:73 scaffold793 SAMTools SNP 207993 207993 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C211:99 scaffold793 SAMTools SNP 214269 214269 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold793 SAMTools SNP 217757 217757 47.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold793 SAMTools SNP 218900 218900 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold793 SAMTools SNP 219199 219199 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold793 SAMTools SNP 219652 219652 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 219940 219940 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold793 SAMTools SNP 220101 220101 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C187:99 scaffold793 SAMTools SNP 220898 220898 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold793 SAMTools SNP 220985 220985 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C153:36 scaffold793 SAMTools SNP 223283 223283 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold793 SAMTools SNP 224193 224193 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold793 SAMTools SNP 224905 224905 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C105:99 scaffold793 SAMTools SNP 245985 245985 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold793 SAMTools SNP 247442 247442 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold793 SAMTools SNP 248415 248415 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold793 SAMTools SNP 249519 249519 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold794 SAMTools SNP 30634 30634 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold794 SAMTools SNP 31644 31644 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C21%2C0:39 scaffold794 SAMTools SNP 35374 35374 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 37274 37274 5.44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold794 SAMTools SNP 47404 47404 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 47447 47447 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold794 SAMTools SNP 66486 66486 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 66503 66503 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold794 SAMTools SNP 78616 78616 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold794 SAMTools SNP 78643 78643 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold794 SAMTools SNP 87367 87367 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D10%3BPV4%3D0.25%2C9.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C38:40 scaffold794 SAMTools SNP 90632 90632 8.22 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold794 SAMTools SNP 91665 91665 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold794 SAMTools SNP 92390 92390 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold794 SAMTools SNP 92500 92500 42.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold794 SAMTools SNP 106122 106122 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D0.33%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold794 SAMTools SNP 107012 107012 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold794 SAMTools SNP 107534 107534 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold794 SAMTools SNP 107620 107620 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold794 SAMTools SNP 107996 107996 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 108524 108524 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold794 SAMTools SNP 121200 121200 66 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold794 SAMTools SNP 121409 121409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold794 SAMTools SNP 122179 122179 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold794 SAMTools SNP 122916 122916 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 122928 122928 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold794 SAMTools SNP 123322 123322 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold794 SAMTools SNP 123867 123867 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold794 SAMTools SNP 123885 123885 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 124438 124438 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 124483 124483 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 124854 124854 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold794 SAMTools SNP 124926 124926 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold794 SAMTools SNP 125470 125470 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 125478 125478 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold794 SAMTools SNP 125527 125527 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold794 SAMTools SNP 126061 126061 98.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold794 SAMTools SNP 126095 126095 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C139:36 scaffold794 SAMTools SNP 126488 126488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold794 SAMTools SNP 126587 126587 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C40%2C10%2C51%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.0056%2C0.12%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold794 SAMTools SNP 131257 131257 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C56%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 131952 131952 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D92%2C13%2C76%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C3.8e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 132003 132003 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C169%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 132027 132027 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C108%2C3%2C87%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 132280 132280 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C35%2C8%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C0.41%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 132594 132594 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C12%2C18%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.16%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 134075 134075 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C66%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.022%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C165:99 scaffold794 SAMTools SNP 134090 134090 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C61%2C2%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.015%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C202:99 scaffold794 SAMTools SNP 134108 134108 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold794 SAMTools SNP 134141 134141 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 134144 134144 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 134471 134471 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold794 SAMTools SNP 134745 134745 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C9%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.2%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold794 SAMTools SNP 134757 134757 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 134784 134784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold794 SAMTools SNP 136229 136229 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C27%2C10%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.0031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 137055 137055 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C30%2C0%2C5%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.17%2C1%2C1%2C1.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold794 SAMTools SNP 137503 137503 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C8%2C20%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.42%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold794 SAMTools SNP 137521 137521 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D96%2C12%2C18%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.21%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold794 SAMTools SNP 137602 137602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C166%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 137611 137611 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 138470 138470 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold794 SAMTools SNP 138598 138598 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.28%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C251:99 scaffold794 SAMTools SNP 139188 139188 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C40%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9e-05%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 139215 139215 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C2%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold794 SAMTools SNP 140033 140033 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.068%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold794 SAMTools SNP 140228 140228 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold794 SAMTools SNP 140235 140235 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold794 SAMTools SNP 140582 140582 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 140645 140645 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C129:31 scaffold794 SAMTools SNP 140648 140648 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold794 SAMTools SNP 140753 140753 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold794 SAMTools SNP 140768 140768 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 140987 140987 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C10%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold794 SAMTools SNP 141098 141098 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C6%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.14%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 141107 141107 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C41%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 141412 141412 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold794 SAMTools SNP 141421 141421 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C25%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold794 SAMTools SNP 141837 141837 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C2%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 141936 141936 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C11%2C66%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 142119 142119 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C22%2C57%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.005%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 142123 142123 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D133%2C23%2C59%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 142550 142550 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C46%2C54%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 147719 147719 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C124%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 147734 147734 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C107%2C3%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 147809 147809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 148359 148359 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C41%2C58%3BMQ%3D50%3BFQ%3D-278%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C251%2C0:99 scaffold794 SAMTools SNP 148600 148600 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C32%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.031%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 148958 148958 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.00055%2C7.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold794 SAMTools SNP 149327 149327 57.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C21%2C0:39 scaffold794 SAMTools SNP 149339 149339 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C21%2C0:39 scaffold794 SAMTools SNP 149345 149345 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C18%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold794 SAMTools SNP 150148 150148 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C33%2C0:63 scaffold794 SAMTools SNP 150509 150509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C24%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold794 SAMTools SNP 152509 152509 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D218%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C155%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 154858 154858 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C8%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold794 SAMTools SNP 154861 154861 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C8%2C15%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.18%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold794 SAMTools SNP 154879 154879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C16%2C29%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 155122 155122 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C104%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 156747 156747 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold794 SAMTools SNP 158475 158475 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 162390 162390 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C18%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold794 SAMTools SNP 164626 164626 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C47%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold794 SAMTools SNP 165350 165350 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 165368 165368 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.18%2C1%2C7.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C241:99 scaffold794 SAMTools SNP 167076 167076 209 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold794 SAMTools SNP 167872 167872 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C9%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C79:82 scaffold794 SAMTools SNP 168049 168049 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 169041 169041 162 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold794 SAMTools SNP 169057 169057 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0038%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0059%2C1.8e-05%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold794 SAMTools SNP 177474 177474 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold794 SAMTools SNP 178409 178409 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold794 SAMTools SNP 178924 178924 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold794 SAMTools SNP 179618 179618 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.64%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold794 SAMTools SNP 179654 179654 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.28%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold794 SAMTools SNP 179663 179663 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.24%2C0.24%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold794 SAMTools SNP 180634 180634 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.62%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold794 SAMTools SNP 180652 180652 118 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.61%2C0.24%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold794 SAMTools SNP 182819 182819 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold794 SAMTools SNP 182933 182933 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold794 SAMTools SNP 198465 198465 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.43%2C7.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C184:77 scaffold794 SAMTools SNP 201413 201413 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold794 SAMTools SNP 202060 202060 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold794 SAMTools SNP 202587 202587 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold794 SAMTools SNP 202973 202973 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C21%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C144%2C0:99 scaffold794 SAMTools SNP 203298 203298 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.28%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold794 SAMTools SNP 204295 204295 55.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C21%2C0:39 scaffold794 SAMTools SNP 204407 204407 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 204466 204466 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 205102 205102 38.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold794 SAMTools SNP 205205 205205 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C156:99 scaffold794 SAMTools SNP 207623 207623 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.21%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold794 SAMTools SNP 209559 209559 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C245:96 scaffold794 SAMTools SNP 209613 209613 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C148:99 scaffold794 SAMTools SNP 213658 213658 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C232:99 scaffold794 SAMTools SNP 213703 213703 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C173:99 scaffold794 SAMTools SNP 217175 217175 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold794 SAMTools SNP 217513 217513 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 217557 217557 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold794 SAMTools SNP 223445 223445 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.1e-07%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C110:39 scaffold794 SAMTools SNP 223509 223509 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D4.92%3BPV4%3D1%2C0.00025%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C38:30 scaffold794 SAMTools SNP 223639 223639 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold794 SAMTools SNP 224766 224766 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold794 SAMTools SNP 224897 224897 15.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C1e-13%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C209:48 scaffold794 SAMTools SNP 225465 225465 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C12%2C7%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.078%2C1.6e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold794 SAMTools SNP 225753 225753 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C71%2C51%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-07%2C1%2C1%2C3.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 226060 226060 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C62%2C48%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00098%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 226159 226159 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C61%2C7%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 230381 230381 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold794 SAMTools SNP 232816 232816 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C6%2C7%2C9%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 234764 234764 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C8%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold794 SAMTools SNP 234836 234836 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C51%2C5%2C8%3BMQ%3D45%3BFQ%3D141%3BPV4%3D0.12%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold794 SAMTools SNP 237544 237544 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold794 SAMTools SNP 239233 239233 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C4%2C16%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.014%2C6.5e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold794 SAMTools SNP 241899 241899 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 243364 243364 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold794 SAMTools SNP 249649 249649 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C60%2C0:99 scaffold794 SAMTools SNP 254713 254713 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 255529 255529 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold794 SAMTools SNP 255577 255577 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C8.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold794 SAMTools SNP 255649 255649 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C222:99 scaffold794 SAMTools SNP 255986 255986 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold794 SAMTools SNP 258070 258070 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold794 SAMTools SNP 258085 258085 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 258097 258097 57 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C24%2C0:45 scaffold794 SAMTools SNP 260440 260440 120 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C211:99 scaffold794 SAMTools SNP 260455 260455 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold794 SAMTools SNP 260456 260456 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold794 SAMTools SNP 260739 260739 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 279091 279091 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold794 SAMTools SNP 280563 280563 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 321282 321282 3.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold794 SAMTools SNP 345602 345602 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C0.16%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold794 SAMTools SNP 345629 345629 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold794 SAMTools SNP 346061 346061 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.11%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold794 SAMTools SNP 346488 346488 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold794 SAMTools SNP 346496 346496 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold794 SAMTools SNP 359369 359369 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold794 SAMTools SNP 395815 395815 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold794 SAMTools SNP 411123 411123 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold794 SAMTools SNP 413359 413359 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 413504 413504 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold794 SAMTools SNP 413536 413536 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 413683 413683 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 414963 414963 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold794 SAMTools SNP 414999 414999 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 415184 415184 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold794 SAMTools SNP 415216 415216 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold794 SAMTools SNP 415725 415725 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold794 SAMTools SNP 428037 428037 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold794 SAMTools SNP 430448 430448 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C24%2C0:45 scaffold794 SAMTools SNP 430556 430556 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold794 SAMTools SNP 430826 430826 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold794 SAMTools SNP 430884 430884 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold794 SAMTools SNP 438798 438798 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold794 SAMTools SNP 446756 446756 14.9 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C6%2C0:10 scaffold794 SAMTools SNP 464274 464274 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.08%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C35:38 scaffold794 SAMTools SNP 475465 475465 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold796 SAMTools SNP 35574 35574 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold796 SAMTools SNP 35594 35594 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold796 SAMTools SNP 35693 35693 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold796 SAMTools SNP 53154 53154 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold796 SAMTools SNP 54201 54201 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold796 SAMTools SNP 56420 56420 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.33%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold796 SAMTools SNP 67271 67271 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D783%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C646%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold796 SAMTools SNP 67887 67887 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D794%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C381%2C46%2C304%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold796 SAMTools SNP 68868 68868 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C42%2C0:64 scaffold796 SAMTools SNP 71145 71145 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D105%2C2%2C11%2C2%3BMQ%3D49%3BFQ%3D33%3BPV4%3D0.058%2C0.45%2C1%2C8.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C222:63 scaffold796 SAMTools SNP 72443 72443 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold796 SAMTools SNP 72452 72452 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold796 SAMTools SNP 72478 72478 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold796 SAMTools SNP 73692 73692 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold796 SAMTools SNP 73961 73961 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C10%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.091%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold796 SAMTools SNP 73979 73979 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold796 SAMTools SNP 73991 73991 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold796 SAMTools SNP 74674 74674 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold796 SAMTools SNP 74707 74707 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C236:99 scaffold796 SAMTools SNP 75187 75187 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C7%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold796 SAMTools SNP 75349 75349 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C27%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold796 SAMTools SNP 76099 76099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C21%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold796 SAMTools SNP 76129 76129 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C26%2C14%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.0033%2C1%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold796 SAMTools SNP 76570 76570 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C22%2C42%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold796 SAMTools SNP 76887 76887 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C55%2C6%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold796 SAMTools SNP 77730 77730 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C55%2C1%2C14%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.34%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold796 SAMTools SNP 77964 77964 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold796 SAMTools SNP 78661 78661 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold796 SAMTools SNP 78797 78797 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold801 SAMTools SNP 11075 11075 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 11078 11078 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 11248 11248 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 21129 21129 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 58597 58597 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 62704 62704 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 62742 62742 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 64064 64064 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C5%2C14%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0061%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold801 SAMTools SNP 64223 64223 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold801 SAMTools SNP 64234 64234 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold801 SAMTools SNP 64319 64319 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 64325 64325 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 64594 64594 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold801 SAMTools SNP 64649 64649 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 64675 64675 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold801 SAMTools SNP 64984 64984 144 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C47%2C35%2C171%2C0%2C168:21 scaffold801 SAMTools SNP 65077 65077 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold801 SAMTools SNP 65246 65246 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 65406 65406 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C214:99 scaffold801 SAMTools SNP 65838 65838 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C152:99 scaffold801 SAMTools SNP 65848 65848 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold801 SAMTools SNP 65876 65876 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 65920 65920 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold801 SAMTools SNP 66304 66304 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold801 SAMTools SNP 69501 69501 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C4%3BMQ%3D48%3BFQ%3D41%3BPV4%3D0.27%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold801 SAMTools SNP 69538 69538 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C3%3BMQ%3D46%3BFQ%3D116%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C200:99 scaffold801 SAMTools SNP 69796 69796 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C232:48 scaffold801 SAMTools SNP 69837 69837 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C8%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.47%2C1.9e-10%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold801 SAMTools SNP 69884 69884 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C1.5e-07%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C171:84 scaffold801 SAMTools SNP 70422 70422 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D23.9%3BPV4%3D0.18%2C2.7e-12%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C67:54 scaffold801 SAMTools SNP 80184 80184 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 80420 80420 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.00034%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold801 SAMTools SNP 80474 80474 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C41:44 scaffold801 SAMTools SNP 86408 86408 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 86435 86435 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 87287 87287 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold801 SAMTools SNP 92175 92175 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 99784 99784 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 101927 101927 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.43%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C164:74 scaffold801 SAMTools SNP 101960 101960 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold801 SAMTools SNP 102138 102138 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 102178 102178 128 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold801 SAMTools SNP 102374 102374 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 102480 102480 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C24%2C0:45 scaffold801 SAMTools SNP 102782 102782 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D47%3BFQ%3D-3.53%3BPV4%3D1%2C0.13%2C0.37%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C26:29 scaffold801 SAMTools SNP 102871 102871 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D41%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold801 SAMTools SNP 103062 103062 17.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D25%3BFQ%3D-32%3BPV4%3D1%2C0.24%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C5%2C0:8 scaffold801 SAMTools SNP 103706 103706 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold801 SAMTools SNP 105221 105221 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C4.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C152:34 scaffold801 SAMTools SNP 106965 106965 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7824%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1525%2C1645%2C2728%2C1602%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.9e-38%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 107938 107938 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5342%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1148%2C1801%2C745%2C1557%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.7e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 108034 108034 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6330%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1400%2C2028%2C478%2C411%3BMQ%3D50%3BFQ%3D145%3BPV4%3D5.6e-12%2C1.3e-134%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold801 SAMTools SNP 108485 108485 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 111980 111980 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 114793 114793 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 114802 114802 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 115708 115708 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D717%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C383%2C320%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 115717 115717 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D629%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C306%2C323%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 116330 116330 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C290%2C198%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C0.48%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 121092 121092 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C134:46 scaffold801 SAMTools SNP 121735 121735 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C36%2C0:64 scaffold801 SAMTools SNP 123396 123396 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C5.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C92:37 scaffold801 SAMTools SNP 123630 123630 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.7%3BPV4%3D1%2C9.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C77:80 scaffold801 SAMTools SNP 125957 125957 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D397%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C3%2C183%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 129402 129402 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold801 SAMTools SNP 129906 129906 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold801 SAMTools SNP 132110 132110 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold801 SAMTools SNP 132117 132117 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold801 SAMTools SNP 132659 132659 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold801 SAMTools SNP 133103 133103 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C3%2C0:6 scaffold801 SAMTools SNP 133212 133212 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C1%3BMQ%3D33%3BFQ%3D13.2%3BPV4%3D1%2C0.15%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C40:43 scaffold801 SAMTools SNP 133274 133274 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C7%3BMQ%3D42%3BFQ%3D-7.78%3BPV4%3D0.58%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold801 SAMTools SNP 134267 134267 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold801 SAMTools SNP 134478 134478 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C0%2C16%2C0%3BMQ%3D49%3BFQ%3D72%3BPV4%3D1%2C0.42%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C209:99 scaffold801 SAMTools SNP 138447 138447 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 140802 140802 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold801 SAMTools SNP 149133 149133 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 152905 152905 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C37%3BMQ%3D33%3BFQ%3D-116%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C89%2C0:99 scaffold801 SAMTools SNP 153720 153720 92.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C15%2C0:27 scaffold801 SAMTools SNP 159628 159628 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 159640 159640 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 160130 160130 86 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C54%2C0%2C96%2C18%2C93:99 scaffold801 SAMTools SNP 160271 160271 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C24%2C0:45 scaffold801 SAMTools SNP 160296 160296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C42%3BMQ%3D49%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold801 SAMTools SNP 161012 161012 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 161024 161024 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 161325 161325 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C10%3BMQ%3D39%3BFQ%3D-14.2%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C13:16 scaffold801 SAMTools SNP 162176 162176 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C0%3BMQ%3D48%3BFQ%3D176%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold801 SAMTools SNP 162416 162416 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 162632 162632 158 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D43%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C36%2C0:69 scaffold801 SAMTools SNP 162739 162739 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C57%2C0:99 scaffold801 SAMTools SNP 162811 162811 100 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C51%2C0:99 scaffold801 SAMTools SNP 165417 165417 38.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C10%2C2%3BMQ%3D15%3BFQ%3D-34%3BPV4%3D0.48%2C0.0018%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C7%2C0:12 scaffold801 SAMTools SNP 165591 165591 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C10%3BMQ%3D18%3BFQ%3D4.75%3BPV4%3D1%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C50:28 scaffold801 SAMTools SNP 169397 169397 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 170497 170497 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C1%2C67%3BMQ%3D50%3BFQ%3D-149%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C122%2C0:99 scaffold801 SAMTools SNP 170545 170545 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C65%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold801 SAMTools SNP 170605 170605 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold801 SAMTools SNP 172279 172279 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C7%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold801 SAMTools SNP 172606 172606 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 172624 172624 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 172950 172950 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold801 SAMTools SNP 172962 172962 86 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C212:99 scaffold801 SAMTools SNP 173303 173303 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.33%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 173336 173336 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 173348 173348 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C6%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold801 SAMTools SNP 174039 174039 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.6%2C0.025%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold801 SAMTools SNP 174051 174051 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold801 SAMTools SNP 174090 174090 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.49%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold801 SAMTools SNP 174123 174123 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold801 SAMTools SNP 174305 174305 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold801 SAMTools SNP 174534 174534 81 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold801 SAMTools SNP 174618 174618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold801 SAMTools SNP 174657 174657 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C23%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.068%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 175679 175679 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0063%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold801 SAMTools SNP 175718 175718 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C18%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold801 SAMTools SNP 175724 175724 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C3%2C7%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.29%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold801 SAMTools SNP 177682 177682 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C6%2C8%2C1%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C0.33%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold801 SAMTools SNP 177720 177720 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C56%2C4%2C19%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.052%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold801 SAMTools SNP 177927 177927 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C48%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold801 SAMTools SNP 177954 177954 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C43%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.076%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 178575 178575 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C2%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.021%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C180:99 scaffold801 SAMTools SNP 178588 178588 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold801 SAMTools SNP 178590 178590 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0082%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold801 SAMTools SNP 178635 178635 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold801 SAMTools SNP 178958 178958 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C24:27 scaffold801 SAMTools SNP 179002 179002 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold801 SAMTools SNP 179103 179103 82.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C21%2C0:39 scaffold801 SAMTools SNP 180063 180063 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 182562 182562 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C7%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.3%2C2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold801 SAMTools SNP 194306 194306 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold801 SAMTools SNP 194349 194349 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C121:99 scaffold801 SAMTools SNP 200121 200121 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold801 SAMTools SNP 200735 200735 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.45%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold801 SAMTools SNP 205792 205792 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold801 SAMTools SNP 206422 206422 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43.9%3BPV4%3D1%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C88:74 scaffold801 SAMTools SNP 206545 206545 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold801 SAMTools SNP 207535 207535 197 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C3%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.14%2C0.16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C195:99 scaffold801 SAMTools SNP 207554 207554 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold801 SAMTools SNP 207596 207596 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.28%2C3e-08%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C162:99 scaffold801 SAMTools SNP 207883 207883 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C70:44 scaffold801 SAMTools SNP 208246 208246 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.2%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C227:41 scaffold801 SAMTools SNP 208615 208615 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold801 SAMTools SNP 208767 208767 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C35:38 scaffold801 SAMTools SNP 209090 209090 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0148%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.084%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold801 SAMTools SNP 209100 209100 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold801 SAMTools SNP 209136 209136 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold801 SAMTools SNP 210349 210349 66.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C18%2C0:33 scaffold801 SAMTools SNP 211193 211193 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold801 SAMTools SNP 215144 215144 139 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold801 SAMTools SNP 215306 215306 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold801 SAMTools SNP 215763 215763 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold801 SAMTools SNP 215767 215767 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold801 SAMTools SNP 215770 215770 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0261%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold801 SAMTools SNP 216416 216416 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold801 SAMTools SNP 216704 216704 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold801 SAMTools SNP 217306 217306 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 217587 217587 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold801 SAMTools SNP 219628 219628 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C8%2C65%2C40%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D0.00074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold801 SAMTools SNP 219913 219913 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 220380 220380 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 220970 220970 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.14%2C0.0024%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold801 SAMTools SNP 220978 220978 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 221261 221261 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold801 SAMTools SNP 221267 221267 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold801 SAMTools SNP 221294 221294 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold801 SAMTools SNP 221338 221338 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold801 SAMTools SNP 221656 221656 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C10%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold801 SAMTools SNP 222051 222051 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C8%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold801 SAMTools SNP 222194 222194 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C31%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold801 SAMTools SNP 223103 223103 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C14%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold801 SAMTools SNP 223670 223670 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C16%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold801 SAMTools SNP 224123 224123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 224133 224133 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 226868 226868 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C15%2C0:27 scaffold801 SAMTools SNP 227033 227033 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C148:99 scaffold801 SAMTools SNP 227057 227057 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.15%2C0.005%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold801 SAMTools SNP 227345 227345 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C3%2C11%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C226:99 scaffold801 SAMTools SNP 227536 227536 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.3%2C0.11%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold801 SAMTools SNP 227569 227569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.58%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold801 SAMTools SNP 227602 227602 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold801 SAMTools SNP 231938 231938 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 234106 234106 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 234129 234129 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D46%3BFQ%3D48%3BPV4%3D0.14%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C128:78 scaffold801 SAMTools SNP 235053 235053 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C61%2C8%2C50%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.49%2C6.1e-92%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold801 SAMTools SNP 235627 235627 205 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.49%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C152:99 scaffold801 SAMTools SNP 235789 235789 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold801 SAMTools SNP 235819 235819 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 236301 236301 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold801 SAMTools SNP 236339 236339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold801 SAMTools SNP 236369 236369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1315%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D676%2C0%2C637%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.25%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 238362 238362 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1350%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D663%2C2%2C679%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.1%2C1%2C0.0062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 240834 240834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1343%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C1327%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold801 SAMTools SNP 243591 243591 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.14%2C0.0094%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C140:40 scaffold801 SAMTools SNP 243715 243715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold801 SAMTools SNP 244390 244390 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C12%3BMQ%3D48%3BFQ%3D195%3BPV4%3D0.26%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold801 SAMTools SNP 244559 244559 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C12%3BMQ%3D49%3BFQ%3D158%3BPV4%3D0.37%2C0.18%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C185:99 scaffold801 SAMTools SNP 244868 244868 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold801 SAMTools SNP 244880 244880 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 246686 246686 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C132:99 scaffold801 SAMTools SNP 246712 246712 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold801 SAMTools SNP 246728 246728 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C0.34%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C246:86 scaffold801 SAMTools SNP 246740 246740 99 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.28%2C0.46%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold801 SAMTools SNP 246741 246741 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.026%2C0.00021%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold801 SAMTools SNP 248104 248104 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.16%2C7.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C237:81 scaffold801 SAMTools SNP 248214 248214 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 248654 248654 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold801 SAMTools SNP 254674 254674 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D2%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C5:8 scaffold801 SAMTools SNP 256286 256286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C29%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C0:99 scaffold801 SAMTools SNP 256295 256295 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C30%2C20%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1.2e-06%2C0.3%2C1%2C6.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold801 SAMTools SNP 256328 256328 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C30%2C29%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00033%2C0.065%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 256358 256358 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C5%2C21%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.71%2C0.012%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold801 SAMTools SNP 256367 256367 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C19%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.31%2C8.7e-05%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold801 SAMTools SNP 257713 257713 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold801 SAMTools SNP 257749 257749 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold801 SAMTools SNP 258204 258204 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C39%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold801 SAMTools SNP 258216 258216 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 258286 258286 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold801 SAMTools SNP 258615 258615 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold801 SAMTools SNP 258657 258657 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold801 SAMTools SNP 258907 258907 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold801 SAMTools SNP 258916 258916 44 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold801 SAMTools SNP 258952 258952 33.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold801 SAMTools SNP 259003 259003 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold801 SAMTools SNP 259579 259579 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C0.083%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold801 SAMTools SNP 259810 259810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold801 SAMTools SNP 259816 259816 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.00078;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold801 SAMTools SNP 260197 260197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C4%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold801 SAMTools SNP 260286 260286 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C40%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold801 SAMTools SNP 260301 260301 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C41%2C1%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 260697 260697 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C40%2C0%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 260724 260724 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C1%2C30%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold801 SAMTools SNP 260938 260938 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C14%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold801 SAMTools SNP 260960 260960 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold801 SAMTools SNP 260962 260962 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold801 SAMTools SNP 260971 260971 29.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold801 SAMTools SNP 261662 261662 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold801 SAMTools SNP 297650 297650 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.17%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold801 SAMTools SNP 337896 337896 30.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold801 SAMTools SNP 338059 338059 37.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold801 SAMTools SNP 338371 338371 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C3.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold801 SAMTools SNP 350470 350470 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold801 SAMTools SNP 360197 360197 48.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold801 SAMTools SNP 383110 383110 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.38%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C223:48 scaffold801 SAMTools SNP 383167 383167 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.03%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C109:47 scaffold801 SAMTools SNP 386164 386164 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold801 SAMTools SNP 428503 428503 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold801 SAMTools SNP 435572 435572 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold801 SAMTools SNP 438578 438578 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold801 SAMTools SNP 442121 442121 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C11%2C12%2C13%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.78%2C3.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold801 SAMTools SNP 453490 453490 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold801 SAMTools SNP 462566 462566 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold801 SAMTools SNP 483117 483117 185 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold801 SAMTools SNP 492214 492214 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold801 SAMTools SNP 492259 492259 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold801 SAMTools SNP 504001 504001 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold801 SAMTools SNP 518177 518177 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold801 SAMTools SNP 519913 519913 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 519942 519942 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 553588 553588 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D43%3BFQ%3D4.6%3BPV4%3D1%2C0.00072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C42:28 scaffold801 SAMTools SNP 567190 567190 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold801 SAMTools SNP 569410 569410 50.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D43%3BFQ%3D-42%3BPV4%3D1%2C0.00034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C15%2C0:27 scaffold801 SAMTools SNP 632160 632160 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold801 SAMTools SNP 638973 638973 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold801 SAMTools SNP 639441 639441 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold801 SAMTools SNP 639457 639457 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0056%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold801 SAMTools SNP 639673 639673 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.18%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold801 SAMTools SNP 644151 644151 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold801 SAMTools SNP 644708 644708 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 645089 645089 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 645094 645094 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold801 SAMTools SNP 655369 655369 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold801 SAMTools SNP 655506 655506 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold801 SAMTools SNP 658401 658401 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C5%2C2%3BMQ%3D44%3BFQ%3D123%3BPV4%3D0.001%2C3.3e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C198:99 scaffold801 SAMTools SNP 658446 658446 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.026%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C253:34 scaffold801 SAMTools SNP 658503 658503 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 659936 659936 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C9%2C11%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.69%2C1.3e-30%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold801 SAMTools SNP 660055 660055 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C28%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.2%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C186:99 scaffold801 SAMTools SNP 664508 664508 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold801 SAMTools SNP 664865 664865 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold801 SAMTools SNP 666783 666783 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold801 SAMTools SNP 677264 677264 63 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D40%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C42%2C0:81 scaffold801 SAMTools SNP 677319 677319 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold801 SAMTools SNP 677643 677643 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C0%2C28%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C1%2C0:4 scaffold801 SAMTools SNP 677997 677997 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold801 SAMTools SNP 681603 681603 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C10%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.24%2C0.24%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold801 SAMTools SNP 683092 683092 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C0%2C4%3BMQ%3D49%3BFQ%3D72%3BPV4%3D0.13%2C0.25%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold801 SAMTools SNP 683211 683211 21.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold801 SAMTools SNP 685426 685426 58 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C33%2C0:63 scaffold801 SAMTools SNP 720336 720336 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C48%2C0%2C10%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C0.49%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold801 SAMTools SNP 720338 720338 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.21%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold801 SAMTools SNP 720629 720629 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C14%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.00019%2C6.1e-05%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold801 SAMTools SNP 788023 788023 32 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold801 SAMTools SNP 788394 788394 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 816657 816657 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold801 SAMTools SNP 824370 824370 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold801 SAMTools SNP 824989 824989 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold801 SAMTools SNP 824991 824991 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold801 SAMTools SNP 837050 837050 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold801 SAMTools SNP 872456 872456 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold801 SAMTools SNP 885534 885534 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold801 SAMTools SNP 886071 886071 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C0%2C14%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D3.4e-05%2C9.2e-11%2C1%2C6.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold801 SAMTools SNP 886139 886139 100 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold801 SAMTools SNP 886746 886746 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.12%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C226:47 scaffold801 SAMTools SNP 890927 890927 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold801 SAMTools SNP 891459 891459 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold801 SAMTools SNP 893358 893358 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold801 SAMTools SNP 893574 893574 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C27%2C0:51 scaffold802 SAMTools SNP 1945 1945 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 6019 6019 7.59 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold802 SAMTools SNP 6142 6142 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold802 SAMTools SNP 6487 6487 21.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D22%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold802 SAMTools SNP 6604 6604 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold802 SAMTools SNP 7510 7510 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C2.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold802 SAMTools SNP 107740 107740 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 125089 125089 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold802 SAMTools SNP 128645 128645 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold802 SAMTools SNP 141680 141680 9.31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold802 SAMTools SNP 146261 146261 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold802 SAMTools SNP 146438 146438 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold802 SAMTools SNP 149091 149091 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold802 SAMTools SNP 149237 149237 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold802 SAMTools SNP 151126 151126 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 151175 151175 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold802 SAMTools SNP 151222 151222 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C0.34%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C35:38 scaffold802 SAMTools SNP 155583 155583 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.002%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold802 SAMTools SNP 156082 156082 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold802 SAMTools SNP 156195 156195 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold802 SAMTools SNP 158434 158434 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 158810 158810 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 158840 158840 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold802 SAMTools SNP 158874 158874 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold802 SAMTools SNP 158910 158910 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold802 SAMTools SNP 161913 161913 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold802 SAMTools SNP 161915 161915 128 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold802 SAMTools SNP 163397 163397 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold802 SAMTools SNP 166269 166269 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold802 SAMTools SNP 166572 166572 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold802 SAMTools SNP 168207 168207 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold802 SAMTools SNP 169360 169360 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold802 SAMTools SNP 170587 170587 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold802 SAMTools SNP 170611 170611 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 170656 170656 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 174782 174782 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold802 SAMTools SNP 174797 174797 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold802 SAMTools SNP 175433 175433 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.47%2C0.42%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold802 SAMTools SNP 175466 175466 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C214:99 scaffold802 SAMTools SNP 181625 181625 60 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C0.26%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C32:35 scaffold802 SAMTools SNP 182478 182478 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold802 SAMTools SNP 182514 182514 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold802 SAMTools SNP 183149 183149 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.17%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C221:71 scaffold802 SAMTools SNP 184324 184324 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold802 SAMTools SNP 186707 186707 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold802 SAMTools SNP 186734 186734 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold802 SAMTools SNP 194039 194039 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.1%2C5.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C77:49 scaffold802 SAMTools SNP 194171 194171 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold802 SAMTools SNP 194179 194179 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold802 SAMTools SNP 195110 195110 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 195121 195121 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 196410 196410 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 196416 196416 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 201964 201964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 202012 202012 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 208039 208039 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C60:63 scaffold802 SAMTools SNP 208225 208225 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C3%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold802 SAMTools SNP 208462 208462 135 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C27%2C0:51 scaffold802 SAMTools SNP 208537 208537 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C27%2C0:51 scaffold802 SAMTools SNP 208777 208777 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.6e-24%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold802 SAMTools SNP 209266 209266 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C17%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.56%2C1.1e-16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C85:88 scaffold802 SAMTools SNP 209417 209417 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold802 SAMTools SNP 209447 209447 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.23%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C118:99 scaffold802 SAMTools SNP 216235 216235 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold802 SAMTools SNP 216439 216439 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold802 SAMTools SNP 217086 217086 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C21%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.22%2C4.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold802 SAMTools SNP 217286 217286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold802 SAMTools SNP 217301 217301 145 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.31%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C200:99 scaffold802 SAMTools SNP 217331 217331 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.062%2C5.5e-06%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold802 SAMTools SNP 217337 217337 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.022%2C0.49%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold802 SAMTools SNP 217431 217431 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C1.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold802 SAMTools SNP 218130 218130 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold802 SAMTools SNP 218193 218193 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.093%2C0.14%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold802 SAMTools SNP 229685 229685 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C27%2C1%2C24%3BMQ%3D49%3BFQ%3D201%3BPV4%3D0.22%2C1.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold802 SAMTools SNP 230653 230653 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C8%2C4%2C4%3BMQ%3D49%3BFQ%3D145%3BPV4%3D0.19%2C1%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold802 SAMTools SNP 230681 230681 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold802 SAMTools SNP 231056 231056 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C28%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold802 SAMTools SNP 231823 231823 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.25%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold802 SAMTools SNP 231865 231865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold802 SAMTools SNP 231878 231878 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold802 SAMTools SNP 232415 232415 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.11%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold802 SAMTools SNP 232442 232442 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold802 SAMTools SNP 232713 232713 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 232860 232860 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold802 SAMTools SNP 233010 233010 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold802 SAMTools SNP 233375 233375 75.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C18%2C0:33 scaffold802 SAMTools SNP 233613 233613 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold802 SAMTools SNP 234093 234093 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 234536 234536 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold802 SAMTools SNP 234620 234620 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold802 SAMTools SNP 234674 234674 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold802 SAMTools SNP 235122 235122 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold802 SAMTools SNP 235140 235140 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 235206 235206 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold802 SAMTools SNP 235386 235386 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold802 SAMTools SNP 235416 235416 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold802 SAMTools SNP 235661 235661 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.15%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 236394 236394 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C9%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.094%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 236454 236454 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold802 SAMTools SNP 236709 236709 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 240325 240325 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold802 SAMTools SNP 240363 240363 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C25%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.55%2C0.42%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold802 SAMTools SNP 240372 240372 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.55%2C0.045%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold802 SAMTools SNP 240834 240834 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold802 SAMTools SNP 240843 240843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C11%2C11%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.00048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 241441 241441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C21%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 242477 242477 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C9%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 242498 242498 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C8%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.45%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C218:99 scaffold802 SAMTools SNP 242591 242591 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold802 SAMTools SNP 242752 242752 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C113:99 scaffold802 SAMTools SNP 242875 242875 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.017%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold802 SAMTools SNP 242893 242893 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold802 SAMTools SNP 242899 242899 221 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C43%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D4.4e-07%2C0.19%2C1%2C1.5e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C71:74 scaffold802 SAMTools SNP 243390 243390 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C1%2C27%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C2.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold802 SAMTools SNP 243414 243414 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C45%2C21%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D8.3e-13%2C7.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold802 SAMTools SNP 243465 243465 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C0%2C22%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1.3e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold802 SAMTools SNP 243487 243487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C49%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold802 SAMTools SNP 243818 243818 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C20%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D1%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C27:30 scaffold802 SAMTools SNP 244058 244058 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C189:99 scaffold802 SAMTools SNP 244151 244151 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.17%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C146:82 scaffold802 SAMTools SNP 244160 244160 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C51%2C0:99 scaffold802 SAMTools SNP 245370 245370 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold802 SAMTools SNP 245388 245388 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold802 SAMTools SNP 245481 245481 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C6%3BMQ%3D44%3BFQ%3D-45%3BPV4%3D0.33%2C0.42%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C18%2C0:33 scaffold802 SAMTools SNP 249805 249805 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C18%2C7%3BMQ%3D30%3BFQ%3D117%3BPV4%3D0.15%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C150:99 scaffold802 SAMTools SNP 253932 253932 61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold802 SAMTools SNP 253956 253956 103 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C31%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.01%2C7.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold802 SAMTools SNP 254748 254748 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C37%2C1%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.67%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold802 SAMTools SNP 254764 254764 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 254793 254793 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C9%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.00017%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold802 SAMTools SNP 255008 255008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold802 SAMTools SNP 255179 255179 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C5%2C5%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold802 SAMTools SNP 255242 255242 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 255671 255671 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 255704 255704 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 256288 256288 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.32%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 256348 256348 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 256381 256381 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C12%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.087%2C0.088%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 257636 257636 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 257661 257661 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 258327 258327 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C4%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold802 SAMTools SNP 258349 258349 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold802 SAMTools SNP 258357 258357 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold802 SAMTools SNP 258384 258384 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C68:71 scaffold802 SAMTools SNP 259343 259343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C10%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold802 SAMTools SNP 259427 259427 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.0039%2C0.081%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold802 SAMTools SNP 259463 259463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 259707 259707 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold802 SAMTools SNP 259725 259725 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C0.23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold802 SAMTools SNP 259776 259776 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold802 SAMTools SNP 259782 259782 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold802 SAMTools SNP 260301 260301 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold802 SAMTools SNP 260586 260586 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 260595 260595 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 261359 261359 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 261362 261362 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 261905 261905 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1e-14%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C171:49 scaffold802 SAMTools SNP 261938 261938 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold802 SAMTools SNP 262366 262366 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold802 SAMTools SNP 262997 262997 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold802 SAMTools SNP 263009 263009 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold802 SAMTools SNP 263027 263027 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 263090 263090 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.029%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C136:75 scaffold802 SAMTools SNP 263219 263219 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold802 SAMTools SNP 264021 264021 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.0018%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C249:54 scaffold802 SAMTools SNP 264063 264063 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold802 SAMTools SNP 264069 264069 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold802 SAMTools SNP 264203 264203 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold802 SAMTools SNP 264260 264260 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C45%2C0:87 scaffold802 SAMTools SNP 264335 264335 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C219:99 scaffold802 SAMTools SNP 264536 264536 189 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C169:99 scaffold802 SAMTools SNP 264569 264569 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C216:99 scaffold802 SAMTools SNP 264623 264623 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold802 SAMTools SNP 264767 264767 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 264839 264839 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold802 SAMTools SNP 265382 265382 38.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold802 SAMTools SNP 265517 265517 3.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold802 SAMTools SNP 265586 265586 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold802 SAMTools SNP 265622 265622 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold802 SAMTools SNP 266932 266932 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 266935 266935 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold802 SAMTools SNP 267891 267891 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold802 SAMTools SNP 268597 268597 134 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold802 SAMTools SNP 268630 268630 135 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold802 SAMTools SNP 268642 268642 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C21%2C0:39 scaffold802 SAMTools SNP 268714 268714 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 268879 268879 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C9%2C0:16 scaffold802 SAMTools SNP 268880 268880 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 268988 268988 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C8%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold802 SAMTools SNP 269251 269251 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C5.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C247:99 scaffold802 SAMTools SNP 269272 269272 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold802 SAMTools SNP 271051 271051 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C30%2C0:57 scaffold802 SAMTools SNP 271240 271240 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C3.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C232:99 scaffold802 SAMTools SNP 271623 271623 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold802 SAMTools SNP 272055 272055 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold802 SAMTools SNP 272079 272079 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 272365 272365 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold802 SAMTools SNP 272398 272398 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold802 SAMTools SNP 272608 272608 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 272611 272611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 272989 272989 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 272991 272991 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 273259 273259 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold802 SAMTools SNP 273322 273322 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C24%2C0:45 scaffold802 SAMTools SNP 273376 273376 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.029%2C5.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C136:37 scaffold802 SAMTools SNP 274632 274632 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C223:99 scaffold802 SAMTools SNP 274799 274799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold802 SAMTools SNP 274850 274850 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 275102 275102 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 275108 275108 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 275546 275546 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 275998 275998 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C230:41 scaffold802 SAMTools SNP 276610 276610 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C7%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold802 SAMTools SNP 276625 276625 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 280439 280439 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.3e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold802 SAMTools SNP 280914 280914 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.26%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold802 SAMTools SNP 281133 281133 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0040%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C12:15 scaffold802 SAMTools SNP 281661 281661 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C102:80 scaffold802 SAMTools SNP 281709 281709 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 281783 281783 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold802 SAMTools SNP 282617 282617 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold802 SAMTools SNP 282781 282781 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.56%2C1.2e-06%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold802 SAMTools SNP 282876 282876 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold802 SAMTools SNP 283704 283704 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold802 SAMTools SNP 283927 283927 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold802 SAMTools SNP 284153 284153 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold802 SAMTools SNP 284966 284966 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 284977 284977 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 284998 284998 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 285179 285179 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0163%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C80:34 scaffold802 SAMTools SNP 285440 285440 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 286038 286038 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold802 SAMTools SNP 286179 286179 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.00058%2C0.014%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold802 SAMTools SNP 286476 286476 136 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0047%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C231:99 scaffold802 SAMTools SNP 286656 286656 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C7.7e-10%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold802 SAMTools SNP 286733 286733 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold802 SAMTools SNP 287384 287384 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold802 SAMTools SNP 287480 287480 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C8%2C1%2C10%3BMQ%3D50%3BFQ%3D44%3BPV4%3D9.4e-06%2C1.7e-10%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold802 SAMTools SNP 287819 287819 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C11%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 288581 288581 180 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C1%2C12%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold802 SAMTools SNP 288593 288593 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 288626 288626 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C21%2C1%2C6%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.12%2C0.0017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold802 SAMTools SNP 288894 288894 87 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C2%2C2%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.024%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C236:99 scaffold802 SAMTools SNP 288930 288930 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C41%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C3.3e-05%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C155:99 scaffold802 SAMTools SNP 288993 288993 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold802 SAMTools SNP 289462 289462 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 289465 289465 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 291556 291556 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold802 SAMTools SNP 292164 292164 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold802 SAMTools SNP 292188 292188 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold802 SAMTools SNP 296186 296186 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold802 SAMTools SNP 301562 301562 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold802 SAMTools SNP 301614 301614 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.0002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C242:39 scaffold802 SAMTools SNP 301702 301702 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold802 SAMTools SNP 309283 309283 210 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D26%2C2%2C19%2C0%3BMQ%3D32%3BFQ%3D-39%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C12%2C0:21 scaffold802 SAMTools SNP 311059 311059 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold802 SAMTools SNP 313405 313405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C23%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 313424 313424 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C13%2C25%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 313508 313508 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 313609 313609 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold802 SAMTools SNP 316468 316468 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C22%3BMQ%3D45%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 319874 319874 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold802 SAMTools SNP 320426 320426 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C45%2C0:86 scaffold802 SAMTools SNP 320711 320711 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C21%2C0:39 scaffold802 SAMTools SNP 320936 320936 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C20%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold802 SAMTools SNP 322936 322936 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 323327 323327 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 323368 323368 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C98%2C0%2C107%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.052%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 323415 323415 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D42%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C30%2C0:57 scaffold802 SAMTools SNP 325935 325935 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold802 SAMTools SNP 326141 326141 135 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C54%2C0:99 scaffold802 SAMTools SNP 326352 326352 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C36%2C0:69 scaffold802 SAMTools SNP 326400 326400 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C24%2C0:44 scaffold802 SAMTools SNP 338822 338822 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 338833 338833 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 339506 339506 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold802 SAMTools SNP 340708 340708 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 351151 351151 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C12%2C0:21 scaffold802 SAMTools SNP 351184 351184 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold802 SAMTools SNP 351226 351226 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 351270 351270 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 351543 351543 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold802 SAMTools SNP 351585 351585 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold802 SAMTools SNP 351623 351623 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold802 SAMTools SNP 351662 351662 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold802 SAMTools SNP 351817 351817 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 351921 351921 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C0%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C138%2C0:99 scaffold802 SAMTools SNP 352363 352363 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold802 SAMTools SNP 352816 352816 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C209:99 scaffold802 SAMTools SNP 352850 352850 141 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.31%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold802 SAMTools SNP 352851 352851 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold802 SAMTools SNP 353231 353231 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold802 SAMTools SNP 353254 353254 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold802 SAMTools SNP 354328 354328 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold802 SAMTools SNP 354350 354350 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold802 SAMTools SNP 359123 359123 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D63.7%3BPV4%3D0.52%2C5.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C103:94 scaffold802 SAMTools SNP 361720 361720 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C63%2C40%2C0%3BMQ%3D50%3BFQ%3D87%3BPV4%3D5.2e-22%2C2e-34%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold802 SAMTools SNP 362058 362058 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C64%2C1%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 362088 362088 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 362220 362220 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold802 SAMTools SNP 362265 362265 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold802 SAMTools SNP 362268 362268 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.24%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold802 SAMTools SNP 365080 365080 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C30%2C40%3BMQ%3D50%3BFQ%3D-181%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold802 SAMTools SNP 365572 365572 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C22%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C8.2e-14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 365712 365712 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D184%2C6%2C187%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.002%2C5.1e-195%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 365804 365804 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D851%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D324%2C145%2C229%2C120%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold802 SAMTools SNP 366014 366014 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D337%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.0045%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold802 SAMTools SNP 366170 366170 67 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C69%2C0%2C99%2C55%2C96:99 scaffold802 SAMTools SNP 367146 367146 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C241%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 367251 367251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 367275 367275 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C19%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 368032 368032 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C8.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold802 SAMTools SNP 368045 368045 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C28%2C10%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D6.3e-05%2C2.6e-13%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold802 SAMTools SNP 369077 369077 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C5%2C2%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.0069%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold802 SAMTools SNP 372197 372197 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C8%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold802 SAMTools SNP 372314 372314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold802 SAMTools SNP 378272 378272 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold802 SAMTools SNP 383601 383601 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold802 SAMTools SNP 385244 385244 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold802 SAMTools SNP 393225 393225 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold804 SAMTools SNP 53703 53703 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold804 SAMTools SNP 58174 58174 6.95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold804 SAMTools SNP 71598 71598 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold804 SAMTools SNP 77954 77954 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C12%2C0:21 scaffold804 SAMTools SNP 77964 77964 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold804 SAMTools SNP 77968 77968 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold804 SAMTools SNP 86793 86793 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold804 SAMTools SNP 89264 89264 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C33%2C0:63 scaffold804 SAMTools SNP 93713 93713 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold804 SAMTools SNP 101550 101550 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold804 SAMTools SNP 248636 248636 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold804 SAMTools SNP 249326 249326 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold804 SAMTools SNP 252549 252549 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold804 SAMTools SNP 252759 252759 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold804 SAMTools SNP 258622 258622 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.23%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold804 SAMTools SNP 258652 258652 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold804 SAMTools SNP 267076 267076 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold804 SAMTools SNP 268463 268463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold804 SAMTools SNP 270270 270270 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold804 SAMTools SNP 272183 272183 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold804 SAMTools SNP 299698 299698 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold804 SAMTools SNP 346194 346194 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold804 SAMTools SNP 346362 346362 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C4.2e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C160:41 scaffold804 SAMTools SNP 346658 346658 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold804 SAMTools SNP 346799 346799 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.4%2C1.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C149:99 scaffold804 SAMTools SNP 347618 347618 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C9.4e-06%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C246:39 scaffold804 SAMTools SNP 380533 380533 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C132:54 scaffold804 SAMTools SNP 381389 381389 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold804 SAMTools SNP 382488 382488 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold804 SAMTools SNP 383734 383734 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold806 SAMTools SNP 19085 19085 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 38267 38267 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 52046 52046 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C1%2C96%2C0%3BMQ%3D31%3BFQ%3D193%3BPV4%3D0.43%2C8.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C238:99 scaffold806 SAMTools SNP 52094 52094 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C79%2C9%2C35%3BMQ%3D34%3BFQ%3D41%3BPV4%3D0.54%2C1%2C5.3e-06%2C5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold806 SAMTools SNP 52125 52125 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D322%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D93%2C63%2C60%2C56%3BMQ%3D39%3BFQ%3D197%3BPV4%3D0.22%2C1%2C0.0021%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold806 SAMTools SNP 54015 54015 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 77647 77647 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold806 SAMTools SNP 77975 77975 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold806 SAMTools SNP 78198 78198 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold806 SAMTools SNP 78367 78367 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold806 SAMTools SNP 78692 78692 159 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.45%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C152:99 scaffold806 SAMTools SNP 79080 79080 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold806 SAMTools SNP 81123 81123 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 81145 81145 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.035%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold806 SAMTools SNP 81490 81490 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold806 SAMTools SNP 81706 81706 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C8%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold806 SAMTools SNP 81925 81925 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C10%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold806 SAMTools SNP 81934 81934 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C16%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C7.6e-11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold806 SAMTools SNP 82015 82015 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold806 SAMTools SNP 82775 82775 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold806 SAMTools SNP 82795 82795 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold806 SAMTools SNP 83653 83653 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 84230 84230 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold806 SAMTools SNP 84269 84269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C20%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold806 SAMTools SNP 87134 87134 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold806 SAMTools SNP 87135 87135 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold806 SAMTools SNP 87281 87281 36.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold806 SAMTools SNP 87352 87352 48.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold806 SAMTools SNP 91837 91837 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold806 SAMTools SNP 92088 92088 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 92114 92114 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold806 SAMTools SNP 92132 92132 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold806 SAMTools SNP 94150 94150 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D9.42%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C38:39 scaffold806 SAMTools SNP 96938 96938 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold806 SAMTools SNP 98873 98873 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold806 SAMTools SNP 98933 98933 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold806 SAMTools SNP 98960 98960 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C19%2C6%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold806 SAMTools SNP 102172 102172 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.081%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold806 SAMTools SNP 102873 102873 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold806 SAMTools SNP 106216 106216 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold806 SAMTools SNP 107481 107481 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D13%2C6%2C0%2C2%3BMQ%3D36%3BFQ%3D4.77%3BPV4%3D0.13%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C251:28 scaffold806 SAMTools SNP 107674 107674 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold806 SAMTools SNP 107899 107899 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold806 SAMTools SNP 108320 108320 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C11%2C11%3BMQ%3D45%3BFQ%3D183%3BPV4%3D0.24%2C1%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold806 SAMTools SNP 108419 108419 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C3%3BMQ%3D37%3BFQ%3D56%3BPV4%3D0.52%2C0.1%2C0.18%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C118:86 scaffold806 SAMTools SNP 108503 108503 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C8%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C0.092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold806 SAMTools SNP 108515 108515 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C7%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.49%2C1%2C0.28%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold806 SAMTools SNP 108590 108590 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C16%3BMQ%3D49%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold806 SAMTools SNP 109697 109697 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C29%2C0%2C5%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.3%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold806 SAMTools SNP 109707 109707 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.47%2C0.41%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold806 SAMTools SNP 110802 110802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D42%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold806 SAMTools SNP 111334 111334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C7%3BMQ%3D47%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold807 SAMTools SNP 63948 63948 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold807 SAMTools SNP 63990 63990 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 64195 64195 26.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C15%2C0:27 scaffold807 SAMTools SNP 67607 67607 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold807 SAMTools SNP 89961 89961 20.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold807 SAMTools SNP 92628 92628 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold807 SAMTools SNP 92906 92906 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 92926 92926 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 102867 102867 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 102869 102869 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold807 SAMTools SNP 104358 104358 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold807 SAMTools SNP 118614 118614 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C74:31 scaffold807 SAMTools SNP 120762 120762 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 121546 121546 169 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold807 SAMTools SNP 122214 122214 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold807 SAMTools SNP 122980 122980 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C74:77 scaffold807 SAMTools SNP 122993 122993 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold807 SAMTools SNP 123008 123008 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold807 SAMTools SNP 123014 123014 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold807 SAMTools SNP 123050 123050 88 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold807 SAMTools SNP 123071 123071 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C182:99 scaffold807 SAMTools SNP 131078 131078 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 131085 131085 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold807 SAMTools SNP 136675 136675 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold807 SAMTools SNP 136694 136694 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold807 SAMTools SNP 136775 136775 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold807 SAMTools SNP 138176 138176 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold807 SAMTools SNP 138934 138934 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 141129 141129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 141159 141159 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 142636 142636 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 142666 142666 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold807 SAMTools SNP 142741 142741 47.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold807 SAMTools SNP 142764 142764 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold807 SAMTools SNP 144091 144091 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 144819 144819 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 144963 144963 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 145456 145456 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 146714 146714 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 147433 147433 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 149536 149536 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold807 SAMTools SNP 168656 168656 87.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold807 SAMTools SNP 181950 181950 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold807 SAMTools SNP 227021 227021 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold807 SAMTools SNP 227554 227554 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 227647 227647 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold807 SAMTools SNP 230826 230826 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold807 SAMTools SNP 230863 230863 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold807 SAMTools SNP 259156 259156 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C21%2C1%2C10%3BMQ%3D47%3BFQ%3D4.77%3BPV4%3D0.074%2C1.2e-30%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold807 SAMTools SNP 259356 259356 114 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D32%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C30%2C0:57 scaffold807 SAMTools SNP 259862 259862 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 261367 261367 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C8.5e-08%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C121:93 scaffold807 SAMTools SNP 261980 261980 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C7%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.66%2C3.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold807 SAMTools SNP 262370 262370 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C7%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.66%2C5.1e-12%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold807 SAMTools SNP 265442 265442 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold807 SAMTools SNP 265479 265479 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold807 SAMTools SNP 265488 265488 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold807 SAMTools SNP 265974 265974 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C0%3BMQ%3D47%3BFQ%3D93%3BPV4%3D0.51%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold807 SAMTools SNP 266024 266024 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold807 SAMTools SNP 266045 266045 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C27%2C0:51 scaffold807 SAMTools SNP 266399 266399 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold807 SAMTools SNP 266422 266422 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold807 SAMTools SNP 266998 266998 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold807 SAMTools SNP 267513 267513 94.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C15%2C0:27 scaffold807 SAMTools SNP 267543 267543 63.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold807 SAMTools SNP 271817 271817 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold807 SAMTools SNP 271818 271818 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold807 SAMTools SNP 272052 272052 81.8 . . REF=T;ALT=C,G,A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-33%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C80%2C74%2C112%2C0%2C108%2C148%2C39%2C70%2C145:10 scaffold807 SAMTools SNP 272579 272579 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C0.33%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C38:41 scaffold807 SAMTools SNP 272580 272580 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D40.7%3BPV4%3D0.33%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C68:71 scaffold807 SAMTools SNP 273879 273879 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold807 SAMTools SNP 274008 274008 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold808 SAMTools SNP 16250 16250 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 18900 18900 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 19183 19183 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 19378 19378 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 29246 29246 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold808 SAMTools SNP 29386 29386 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold808 SAMTools SNP 29427 29427 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 31221 31221 34.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold808 SAMTools SNP 33200 33200 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold808 SAMTools SNP 33215 33215 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold808 SAMTools SNP 33227 33227 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold808 SAMTools SNP 36595 36595 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold808 SAMTools SNP 36641 36641 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold808 SAMTools SNP 37082 37082 44.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C6%2C0:10 scaffold808 SAMTools SNP 37102 37102 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0011%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C35:38 scaffold808 SAMTools SNP 37260 37260 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold808 SAMTools SNP 37781 37781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 38177 38177 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold808 SAMTools SNP 39120 39120 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold808 SAMTools SNP 39336 39336 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0206%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold808 SAMTools SNP 39347 39347 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C127:56 scaffold808 SAMTools SNP 39393 39393 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold808 SAMTools SNP 39798 39798 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1.7e-28%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C240:85 scaffold808 SAMTools SNP 42560 42560 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C41%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold808 SAMTools SNP 42588 42588 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold808 SAMTools SNP 42599 42599 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold808 SAMTools SNP 47349 47349 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 47362 47362 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 52637 52637 121 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold808 SAMTools SNP 52644 52644 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold808 SAMTools SNP 76135 76135 52.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C15%2C0:27 scaffold808 SAMTools SNP 76190 76190 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-5.3%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C24:27 scaffold808 SAMTools SNP 79074 79074 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 79944 79944 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 79959 79959 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 80700 80700 50.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold808 SAMTools SNP 81628 81628 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold808 SAMTools SNP 82250 82250 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 83262 83262 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 83292 83292 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 83337 83337 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 85779 85779 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold808 SAMTools SNP 85843 85843 5.29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold808 SAMTools SNP 87635 87635 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C24%2C0:45 scaffold808 SAMTools SNP 95420 95420 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.0065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 95429 95429 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.057%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold808 SAMTools SNP 95553 95553 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 96191 96191 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C25%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 96720 96720 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 97800 97800 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold808 SAMTools SNP 97890 97890 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C15%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold808 SAMTools SNP 98014 98014 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C48%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C5.4e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C163:54 scaffold808 SAMTools SNP 103092 103092 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold808 SAMTools SNP 103419 103419 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.0095%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold808 SAMTools SNP 103614 103614 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C66%2C30%2C74%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0096%2C4.2e-140%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold808 SAMTools SNP 104566 104566 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C22%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C72%2C0:99 scaffold808 SAMTools SNP 113647 113647 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C55%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold808 SAMTools SNP 113710 113710 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold808 SAMTools SNP 113716 113716 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.29%2C0.075%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold808 SAMTools SNP 115202 115202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C27%2C27%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 117316 117316 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold808 SAMTools SNP 117380 117380 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 117655 117655 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C4%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.14%2C3.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold808 SAMTools SNP 117898 117898 7.59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold808 SAMTools SNP 118055 118055 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C4%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C172%2C0:99 scaffold808 SAMTools SNP 118907 118907 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C36%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold808 SAMTools SNP 155226 155226 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold808 SAMTools SNP 155282 155282 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold808 SAMTools SNP 159991 159991 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold808 SAMTools SNP 160049 160049 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 160061 160061 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold808 SAMTools SNP 166620 166620 202 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C38%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C138%2C0%2C226%2C112%2C223:99 scaffold808 SAMTools SNP 166652 166652 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.6e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 178008 178008 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C209:99 scaffold808 SAMTools SNP 178232 178232 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C1%2C1%2C1.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold808 SAMTools SNP 178567 178567 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold808 SAMTools SNP 179485 179485 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold808 SAMTools SNP 192473 192473 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.22%2C0.058%2C1%2C2.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold808 SAMTools SNP 193900 193900 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold808 SAMTools SNP 196852 196852 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold808 SAMTools SNP 197317 197317 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold808 SAMTools SNP 197691 197691 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold808 SAMTools SNP 198168 198168 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C9%2C0:16 scaffold808 SAMTools SNP 198449 198449 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold808 SAMTools SNP 315206 315206 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 315224 315224 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold808 SAMTools SNP 317358 317358 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 317379 317379 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 318601 318601 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.41%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold808 SAMTools SNP 322289 322289 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 322324 322324 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 323264 323264 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold808 SAMTools SNP 351784 351784 14.7 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold808 SAMTools SNP 352181 352181 145 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold808 SAMTools SNP 352269 352269 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold808 SAMTools SNP 354487 354487 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold808 SAMTools SNP 359361 359361 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold808 SAMTools SNP 359391 359391 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold808 SAMTools SNP 359761 359761 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold808 SAMTools SNP 359802 359802 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.042%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C69:72 scaffold808 SAMTools SNP 359818 359818 207 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C30%2C12%2C230%2C0%2C227:33 scaffold808 SAMTools SNP 362048 362048 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold808 SAMTools SNP 362099 362099 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C153:99 scaffold808 SAMTools SNP 363507 363507 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.38%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold808 SAMTools SNP 363525 363525 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold808 SAMTools SNP 364211 364211 89 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold808 SAMTools SNP 366382 366382 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 366388 366388 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 382043 382043 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C8%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold808 SAMTools SNP 394057 394057 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold808 SAMTools SNP 394063 394063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C5%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.069%2C0.23%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold808 SAMTools SNP 394096 394096 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.32%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold808 SAMTools SNP 401271 401271 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold808 SAMTools SNP 401301 401301 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold808 SAMTools SNP 401705 401705 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold808 SAMTools SNP 404220 404220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold808 SAMTools SNP 407575 407575 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.27%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 407581 407581 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 408135 408135 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D-32%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C5%2C0:9 scaffold808 SAMTools SNP 412159 412159 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold808 SAMTools SNP 412817 412817 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold808 SAMTools SNP 412832 412832 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C5%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.023%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold808 SAMTools SNP 412836 412836 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold808 SAMTools SNP 412910 412910 222 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0%2C255%2C39%2C253:99 scaffold808 SAMTools SNP 412946 412946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold808 SAMTools SNP 414612 414612 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C44%2C30%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 414762 414762 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C21%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D3.3e-05%2C0.097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold808 SAMTools SNP 417563 417563 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C26%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 418211 418211 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold808 SAMTools SNP 422654 422654 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold808 SAMTools SNP 422705 422705 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.26%2C5.5e-14%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold808 SAMTools SNP 422726 422726 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C17%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.28%2C2.8e-34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold808 SAMTools SNP 426999 426999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C13%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold808 SAMTools SNP 427916 427916 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C5%3BMQ%3D45%3BFQ%3D96%3BPV4%3D0.6%2C1%2C0.16%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold808 SAMTools SNP 427976 427976 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C0%2C3%3BMQ%3D47%3BFQ%3D32%3BPV4%3D0.042%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold808 SAMTools SNP 427996 427996 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C3%3BMQ%3D49%3BFQ%3D34%3BPV4%3D0.036%2C0.00061%2C0.099%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C214:64 scaffold808 SAMTools SNP 430618 430618 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.013%2C1%2C1%2C0.00033;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold808 SAMTools SNP 430670 430670 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 431403 431403 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C78%2C0:99 scaffold808 SAMTools SNP 432201 432201 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.13%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold808 SAMTools SNP 432960 432960 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold808 SAMTools SNP 432961 432961 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold808 SAMTools SNP 436074 436074 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C48%2C0:93 scaffold808 SAMTools SNP 436190 436190 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0002%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.61%3BPV4%3D0.12%2C5e-08%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C26:29 scaffold808 SAMTools SNP 477226 477226 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 483078 483078 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold808 SAMTools SNP 483857 483857 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 483878 483878 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 484274 484274 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 484403 484403 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 484421 484421 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold808 SAMTools SNP 494566 494566 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 498050 498050 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold808 SAMTools SNP 514783 514783 38.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold808 SAMTools SNP 527687 527687 168 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C146:99 scaffold808 SAMTools SNP 528209 528209 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold808 SAMTools SNP 528226 528226 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.63%2C0.36%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold808 SAMTools SNP 528515 528515 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold808 SAMTools SNP 529002 529002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 529003 529003 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 531666 531666 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 550578 550578 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 560383 560383 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold808 SAMTools SNP 571427 571427 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C2%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C138%2C0:99 scaffold808 SAMTools SNP 571585 571585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C204%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold808 SAMTools SNP 571719 571719 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D844%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C263%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold808 SAMTools SNP 572684 572684 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D682%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C675%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold808 SAMTools SNP 573791 573791 217 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C24%2C3%2C9%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.5%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold808 SAMTools SNP 574889 574889 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold808 SAMTools SNP 574953 574953 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D0.19%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold808 SAMTools SNP 575405 575405 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.076%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold808 SAMTools SNP 575426 575426 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C143:77 scaffold808 SAMTools SNP 575453 575453 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold808 SAMTools SNP 575721 575721 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.41%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold808 SAMTools SNP 575746 575746 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C21%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold808 SAMTools SNP 576104 576104 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D21%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.56%2C2.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold808 SAMTools SNP 576131 576131 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C36%2C7%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.24%2C2.3e-60%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold808 SAMTools SNP 576181 576181 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold808 SAMTools SNP 576206 576206 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C0%2C19%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.16%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C251:99 scaffold808 SAMTools SNP 576456 576456 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C32%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C236:99 scaffold808 SAMTools SNP 576476 576476 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C23%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C244:99 scaffold809 SAMTools SNP 102716 102716 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C30%3BMQ%3D49%3BFQ%3D26%3BPV4%3D1%2C6.8e-38%2C0.24%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C210:56 scaffold809 SAMTools SNP 107970 107970 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D41%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C99:31 scaffold809 SAMTools SNP 138894 138894 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold809 SAMTools SNP 138960 138960 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C104:99 scaffold810 SAMTools SNP 492 492 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 493 493 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 546 546 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold810 SAMTools SNP 963 963 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold810 SAMTools SNP 1231 1231 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold810 SAMTools SNP 1257 1257 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 6363 6363 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 6671 6671 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 6723 6723 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold810 SAMTools SNP 70563 70563 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold810 SAMTools SNP 71040 71040 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold810 SAMTools SNP 71058 71058 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C42%2C0:81 scaffold810 SAMTools SNP 71133 71133 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.042%2C0.43%2C1%2C2.7e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold810 SAMTools SNP 71578 71578 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold810 SAMTools SNP 71648 71648 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.13%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C183:99 scaffold810 SAMTools SNP 72234 72234 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold810 SAMTools SNP 72390 72390 42.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold810 SAMTools SNP 73817 73817 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C190:99 scaffold810 SAMTools SNP 74248 74248 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.46%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C186:99 scaffold810 SAMTools SNP 74299 74299 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C20%2C2%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.033%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C239:99 scaffold810 SAMTools SNP 74659 74659 217 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C27%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold810 SAMTools SNP 74662 74662 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C5%2C7%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.087%2C0.0008%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold810 SAMTools SNP 74723 74723 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C21%2C0:39 scaffold810 SAMTools SNP 75499 75499 122 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C172:99 scaffold810 SAMTools SNP 75528 75528 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold810 SAMTools SNP 75555 75555 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 75597 75597 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 75824 75824 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold810 SAMTools SNP 76021 76021 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold810 SAMTools SNP 76284 76284 88 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C33%2C24%2C117%2C0%2C114:16 scaffold810 SAMTools SNP 76324 76324 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C43:43 scaffold810 SAMTools SNP 80900 80900 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 80931 80931 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold810 SAMTools SNP 85998 85998 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C27%2C0:51 scaffold810 SAMTools SNP 86104 86104 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold810 SAMTools SNP 91134 91134 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C36%2C1%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold810 SAMTools SNP 91179 91179 201 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.62%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold810 SAMTools SNP 91180 91180 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.51%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold810 SAMTools SNP 91222 91222 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold810 SAMTools SNP 91252 91252 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold810 SAMTools SNP 94465 94465 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.33%2C0.14%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold810 SAMTools SNP 95893 95893 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold810 SAMTools SNP 96547 96547 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.0002%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C26:29 scaffold810 SAMTools SNP 96637 96637 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1.3e-06%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C79:61 scaffold810 SAMTools SNP 97248 97248 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold810 SAMTools SNP 101557 101557 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 101933 101933 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold810 SAMTools SNP 102415 102415 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.47%2C2.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C219:94 scaffold810 SAMTools SNP 102817 102817 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold810 SAMTools SNP 113598 113598 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 113614 113614 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 113654 113654 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold810 SAMTools SNP 113693 113693 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold810 SAMTools SNP 114165 114165 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold814 SAMTools SNP 34372 34372 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 34407 34407 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 34486 34486 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 34488 34488 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 53438 53438 84.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C15%2C0:27 scaffold814 SAMTools SNP 56058 56058 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold814 SAMTools SNP 56061 56061 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold814 SAMTools SNP 56088 56088 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 56464 56464 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold814 SAMTools SNP 56467 56467 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold814 SAMTools SNP 56903 56903 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C66:69 scaffold814 SAMTools SNP 56976 56976 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.095%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C138:99 scaffold814 SAMTools SNP 57000 57000 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold814 SAMTools SNP 57460 57460 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.021%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C147:99 scaffold814 SAMTools SNP 57501 57501 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C0.33%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold814 SAMTools SNP 57505 57505 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold814 SAMTools SNP 57884 57884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold814 SAMTools SNP 57941 57941 55.8 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold814 SAMTools SNP 57955 57955 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold814 SAMTools SNP 61467 61467 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C11%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold814 SAMTools SNP 61518 61518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold814 SAMTools SNP 61907 61907 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C28%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C150:99 scaffold814 SAMTools SNP 61916 61916 118 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold814 SAMTools SNP 61943 61943 125 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C8%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold814 SAMTools SNP 61964 61964 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold814 SAMTools SNP 62046 62046 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 62047 62047 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 62611 62611 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold814 SAMTools SNP 62615 62615 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold814 SAMTools SNP 63192 63192 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold814 SAMTools SNP 63762 63762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C19%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold814 SAMTools SNP 65647 65647 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold814 SAMTools SNP 71638 71638 108 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C62%2C0%2C31%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.054%2C3.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold814 SAMTools SNP 74311 74311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C42%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold814 SAMTools SNP 82870 82870 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.18%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C218:31 scaffold814 SAMTools SNP 96317 96317 31.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold814 SAMTools SNP 96368 96368 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.5e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold814 SAMTools SNP 96611 96611 3.41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0081%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold814 SAMTools SNP 115821 115821 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C101:99 scaffold814 SAMTools SNP 116628 116628 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold814 SAMTools SNP 116631 116631 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C39:93 scaffold814 SAMTools SNP 116658 116658 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold814 SAMTools SNP 116736 116736 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold814 SAMTools SNP 116768 116768 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.0069%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold814 SAMTools SNP 117184 117184 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold814 SAMTools SNP 117192 117192 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C17%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold814 SAMTools SNP 117543 117543 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold814 SAMTools SNP 126194 126194 14.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C9%2C0:14 scaffold814 SAMTools SNP 126325 126325 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold814 SAMTools SNP 127145 127145 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C30%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold814 SAMTools SNP 127574 127574 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C24%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold814 SAMTools SNP 127586 127586 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold814 SAMTools SNP 128015 128015 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C26%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.31%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold814 SAMTools SNP 128093 128093 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold814 SAMTools SNP 128105 128105 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold814 SAMTools SNP 128548 128548 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold814 SAMTools SNP 129146 129146 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold814 SAMTools SNP 129162 129162 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold814 SAMTools SNP 129929 129929 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D162%2C113%2C122%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.025%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold814 SAMTools SNP 131097 131097 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D427%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C161%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold814 SAMTools SNP 131551 131551 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.52%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold814 SAMTools SNP 131673 131673 188 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D638%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C48%2C0:93 scaffold814 SAMTools SNP 131696 131696 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1328%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C54%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C82%2C0:99 scaffold814 SAMTools SNP 131759 131759 90 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1126%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C27%2C0:51 scaffold814 SAMTools SNP 135768 135768 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C0.38%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C67:70 scaffold814 SAMTools SNP 135830 135830 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold814 SAMTools SNP 136308 136308 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold814 SAMTools SNP 138279 138279 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold814 SAMTools SNP 138281 138281 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0007%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold814 SAMTools SNP 138324 138324 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold814 SAMTools SNP 138660 138660 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 146291 146291 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold814 SAMTools SNP 146306 146306 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold814 SAMTools SNP 146355 146355 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold814 SAMTools SNP 147650 147650 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold814 SAMTools SNP 147750 147750 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold814 SAMTools SNP 148214 148214 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold814 SAMTools SNP 153996 153996 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold814 SAMTools SNP 154128 154128 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold814 SAMTools SNP 154198 154198 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold814 SAMTools SNP 154446 154446 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold814 SAMTools SNP 154461 154461 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold814 SAMTools SNP 154487 154487 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 154524 154524 3.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold814 SAMTools SNP 154862 154862 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 158964 158964 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 159653 159653 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 160094 160094 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold814 SAMTools SNP 163433 163433 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 176448 176448 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C12%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C7.2e-19%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C216:53 scaffold814 SAMTools SNP 177163 177163 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.061%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C217:53 scaffold814 SAMTools SNP 177309 177309 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold814 SAMTools SNP 177366 177366 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.34%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold814 SAMTools SNP 181731 181731 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold814 SAMTools SNP 181842 181842 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold814 SAMTools SNP 182230 182230 166 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold814 SAMTools SNP 183362 183362 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold814 SAMTools SNP 183571 183571 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold814 SAMTools SNP 183887 183887 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold816 SAMTools SNP 78662 78662 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.56%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C35:38 scaffold816 SAMTools SNP 98654 98654 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold816 SAMTools SNP 98851 98851 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold816 SAMTools SNP 175963 175963 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold816 SAMTools SNP 175971 175971 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold816 SAMTools SNP 177577 177577 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold816 SAMTools SNP 178946 178946 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 6273 6273 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 8627 8627 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold817 SAMTools SNP 8649 8649 9.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.48%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold817 SAMTools SNP 9386 9386 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.33%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C165:99 scaffold817 SAMTools SNP 9440 9440 120 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold817 SAMTools SNP 9458 9458 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold817 SAMTools SNP 9856 9856 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C8%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C93:96 scaffold817 SAMTools SNP 9889 9889 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold817 SAMTools SNP 9940 9940 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold817 SAMTools SNP 9959 9959 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold817 SAMTools SNP 10565 10565 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold817 SAMTools SNP 10589 10589 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold817 SAMTools SNP 11259 11259 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold817 SAMTools SNP 11458 11458 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold817 SAMTools SNP 11473 11473 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold817 SAMTools SNP 11651 11651 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold817 SAMTools SNP 11984 11984 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold817 SAMTools SNP 12074 12074 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.4%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C127:66 scaffold817 SAMTools SNP 12260 12260 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C60:63 scaffold817 SAMTools SNP 12271 12271 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.086%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold817 SAMTools SNP 12284 12284 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold817 SAMTools SNP 12681 12681 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold817 SAMTools SNP 12684 12684 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold817 SAMTools SNP 13711 13711 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold817 SAMTools SNP 13801 13801 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C9%2C0:16 scaffold817 SAMTools SNP 13809 13809 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold817 SAMTools SNP 15410 15410 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold817 SAMTools SNP 15705 15705 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold817 SAMTools SNP 15723 15723 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold817 SAMTools SNP 18283 18283 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.34%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C18:21 scaffold817 SAMTools SNP 18642 18642 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold817 SAMTools SNP 18675 18675 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.34%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold817 SAMTools SNP 18690 18690 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 19802 19802 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold817 SAMTools SNP 19832 19832 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C235:71 scaffold817 SAMTools SNP 19969 19969 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D2%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C18:21 scaffold817 SAMTools SNP 20143 20143 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C17%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.35%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold817 SAMTools SNP 20179 20179 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold817 SAMTools SNP 20221 20221 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold817 SAMTools SNP 20810 20810 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 21253 21253 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold817 SAMTools SNP 21280 21280 174 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D0.077%2C0.29%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C11:14 scaffold817 SAMTools SNP 22510 22510 36.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold817 SAMTools SNP 22665 22665 227 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C1%2C17%2C3%3BMQ%3D48%3BFQ%3D-27%3BPV4%3D0.45%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold817 SAMTools SNP 22908 22908 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C10%3BMQ%3D49%3BFQ%3D153%3BPV4%3D0.033%2C0.00035%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold817 SAMTools SNP 22911 22911 127 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C7%2C1%3BMQ%3D49%3BFQ%3D130%3BPV4%3D0.011%2C1%2C0.058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold817 SAMTools SNP 22929 22929 157 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C3%3BMQ%3D48%3BFQ%3D160%3BPV4%3D0.24%2C0.084%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C199:99 scaffold817 SAMTools SNP 22947 22947 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C7%2C1%3BMQ%3D49%3BFQ%3D122%3BPV4%3D0.0041%2C1%2C0.045%2C9.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold817 SAMTools SNP 23367 23367 20.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold817 SAMTools SNP 26147 26147 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D35%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C30%2C0:57 scaffold817 SAMTools SNP 26359 26359 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C21%2C0:39 scaffold817 SAMTools SNP 26495 26495 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 26496 26496 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold817 SAMTools SNP 26503 26503 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C202:99 scaffold817 SAMTools SNP 27025 27025 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C19%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D1%2C0.46%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold817 SAMTools SNP 27046 27046 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C58%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C0.16%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold817 SAMTools SNP 36606 36606 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold817 SAMTools SNP 38294 38294 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 44768 44768 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 44789 44789 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0020%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 71094 71094 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 71355 71355 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0010%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 72290 72290 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 72492 72492 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 73122 73122 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 74643 74643 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold817 SAMTools SNP 79483 79483 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold817 SAMTools SNP 79959 79959 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.46%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold817 SAMTools SNP 79973 79973 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 80518 80518 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C0.39%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold817 SAMTools SNP 81100 81100 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 81140 81140 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold817 SAMTools SNP 81586 81586 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold817 SAMTools SNP 82082 82082 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold817 SAMTools SNP 82100 82100 14.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C8:11 scaffold817 SAMTools SNP 82493 82493 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold817 SAMTools SNP 82714 82714 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C1%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold817 SAMTools SNP 82729 82729 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 82740 82740 205 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17%2C218%2C0%2C215:57 scaffold817 SAMTools SNP 82779 82779 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C16%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C236:99 scaffold817 SAMTools SNP 83737 83737 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.12%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C240:99 scaffold817 SAMTools SNP 83759 83759 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C11%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C0.19%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold817 SAMTools SNP 87465 87465 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 87468 87468 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 87663 87663 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold817 SAMTools SNP 87699 87699 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold817 SAMTools SNP 87884 87884 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 88401 88401 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold817 SAMTools SNP 88649 88649 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold817 SAMTools SNP 88680 88680 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold817 SAMTools SNP 89153 89153 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold817 SAMTools SNP 89711 89711 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold817 SAMTools SNP 109316 109316 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold817 SAMTools SNP 109985 109985 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold817 SAMTools SNP 110042 110042 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold817 SAMTools SNP 110325 110325 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold817 SAMTools SNP 110335 110335 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 110361 110361 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold817 SAMTools SNP 110376 110376 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold817 SAMTools SNP 110829 110829 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold817 SAMTools SNP 112305 112305 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C15%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold817 SAMTools SNP 112326 112326 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold817 SAMTools SNP 112982 112982 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold817 SAMTools SNP 112985 112985 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold817 SAMTools SNP 113033 113033 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold817 SAMTools SNP 113415 113415 55.8 . . REF=A;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold817 SAMTools SNP 113436 113436 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 113772 113772 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 113790 113790 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 114561 114561 56.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C6%2C0:10 scaffold817 SAMTools SNP 114603 114603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.17%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold817 SAMTools SNP 114615 114615 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C20%2C0%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.49%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold817 SAMTools SNP 115105 115105 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.0028%2C0.0022%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold817 SAMTools SNP 115227 115227 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C12%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.33%2C4.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C224:99 scaffold817 SAMTools SNP 115233 115233 39 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C207%2C183%2C191%2C0%2C176:45 scaffold817 SAMTools SNP 115611 115611 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C32%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 115656 115656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C30%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.44%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 116182 116182 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold817 SAMTools SNP 116374 116374 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C30%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold817 SAMTools SNP 116479 116479 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C4%2C2%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold817 SAMTools SNP 116819 116819 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C13%2C19%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.031%2C0.00093%2C1%2C4.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold817 SAMTools SNP 117266 117266 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.036%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 117281 117281 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C14%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 118024 118024 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C61%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold817 SAMTools SNP 118099 118099 118 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C8%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C239:99 scaffold817 SAMTools SNP 121835 121835 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C21%2C16%2C7%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.31%2C1.4e-32%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold817 SAMTools SNP 121919 121919 153 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C2%2C6%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold817 SAMTools SNP 122081 122081 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.66%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold817 SAMTools SNP 122108 122108 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold817 SAMTools SNP 123906 123906 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.49%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C152:99 scaffold817 SAMTools SNP 126072 126072 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1551%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D368%2C338%2C400%2C349%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1.7e-119%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 126636 126636 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1036%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D111%2C461%2C73%2C95%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1.2e-09%2C0.26%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold817 SAMTools SNP 127106 127106 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold817 SAMTools SNP 127575 127575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C69%2C14%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 127581 127581 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C28%2C1%2C27%3BMQ%3D50%3BFQ%3D49%3BPV4%3D7.2e-08%2C3.8e-23%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold817 SAMTools SNP 128300 128300 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold817 SAMTools SNP 128658 128658 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold817 SAMTools SNP 128972 128972 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold817 SAMTools SNP 128996 128996 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C6%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C2.4e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 129355 129355 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C28%2C18%2C30%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.025%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 129803 129803 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C31%2C12%2C19%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.38%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 129862 129862 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C18%2C105%2C34%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C1%2C0.48%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 129890 129890 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D217%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C18%2C110%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 132595 132595 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C4%2C66%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.14%2C0.27%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold817 SAMTools SNP 139908 139908 18.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C15%2C0:25 scaffold817 SAMTools SNP 142717 142717 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold817 SAMTools SNP 143355 143355 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.27%2C6.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C212:43 scaffold817 SAMTools SNP 143407 143407 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold817 SAMTools SNP 143868 143868 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold817 SAMTools SNP 144078 144078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 144319 144319 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 144393 144393 42.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold817 SAMTools SNP 144551 144551 85 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C7%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C175%2C0:99 scaffold817 SAMTools SNP 145135 145135 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-106;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C176:99 scaffold817 SAMTools SNP 145141 145141 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold817 SAMTools SNP 145294 145294 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C25%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.00011%2C1.4e-10%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold817 SAMTools SNP 145348 145348 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold817 SAMTools SNP 145661 145661 142 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold817 SAMTools SNP 145841 145841 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold817 SAMTools SNP 146170 146170 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold817 SAMTools SNP 146540 146540 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C36%2C0%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D0.027%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C61%2C0:99 scaffold817 SAMTools SNP 146561 146561 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.0083%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold817 SAMTools SNP 146576 146576 29.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold817 SAMTools SNP 146639 146639 177 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold817 SAMTools SNP 147077 147077 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.029%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C220:63 scaffold817 SAMTools SNP 147101 147101 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold817 SAMTools SNP 147111 147111 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold817 SAMTools SNP 147137 147137 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 148052 148052 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C6%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold817 SAMTools SNP 148082 148082 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold817 SAMTools SNP 148094 148094 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C0%2C12%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold817 SAMTools SNP 148106 148106 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C0%2C12%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.58%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold817 SAMTools SNP 148713 148713 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C8%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold817 SAMTools SNP 149175 149175 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.5e-05%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold817 SAMTools SNP 149184 149184 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold817 SAMTools SNP 149253 149253 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.53%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold817 SAMTools SNP 149268 149268 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold817 SAMTools SNP 149733 149733 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold817 SAMTools SNP 154419 154419 37 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.5e-05%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C116:70 scaffold817 SAMTools SNP 154528 154528 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.0097;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold817 SAMTools SNP 154597 154597 191 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C11%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C88:91 scaffold817 SAMTools SNP 154859 154859 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold817 SAMTools SNP 154880 154880 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold817 SAMTools SNP 174154 174154 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold817 SAMTools SNP 174385 174385 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold817 SAMTools SNP 176927 176927 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C1%2C35%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.41%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold817 SAMTools SNP 178819 178819 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold817 SAMTools SNP 180686 180686 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C35%2C29%2C56%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.41%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 182316 182316 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C39%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold817 SAMTools SNP 182326 182326 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C32%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold817 SAMTools SNP 183562 183562 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold817 SAMTools SNP 184238 184238 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C85%2C37%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.27%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold817 SAMTools SNP 185154 185154 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C232:82 scaffold817 SAMTools SNP 210999 210999 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold818 SAMTools SNP 6839 6839 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold818 SAMTools SNP 6857 6857 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold818 SAMTools SNP 6893 6893 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C0%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold818 SAMTools SNP 8669 8669 9.31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold818 SAMTools SNP 8797 8797 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D125%2C49%2C95%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold818 SAMTools SNP 11269 11269 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C96%2C29%2C113%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.39%2C1%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold818 SAMTools SNP 112562 112562 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold818 SAMTools SNP 112612 112612 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold818 SAMTools SNP 113079 113079 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold818 SAMTools SNP 113095 113095 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold818 SAMTools SNP 113106 113106 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold818 SAMTools SNP 113139 113139 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold818 SAMTools SNP 241055 241055 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold818 SAMTools SNP 241064 241064 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold818 SAMTools SNP 241699 241699 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C38:41 scaffold818 SAMTools SNP 243018 243018 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold818 SAMTools SNP 243039 243039 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold818 SAMTools SNP 247743 247743 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.081%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold818 SAMTools SNP 247747 247747 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold818 SAMTools SNP 247782 247782 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold818 SAMTools SNP 252412 252412 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold818 SAMTools SNP 252421 252421 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold818 SAMTools SNP 295122 295122 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.47%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C68:71 scaffold818 SAMTools SNP 295125 295125 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold818 SAMTools SNP 297385 297385 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.15%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C155:99 scaffold818 SAMTools SNP 297517 297517 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C21%2C0:39 scaffold818 SAMTools SNP 297535 297535 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold818 SAMTools SNP 298018 298018 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C29%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold818 SAMTools SNP 298095 298095 23.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C6%2C0:10 scaffold818 SAMTools SNP 298124 298124 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5009%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C24:28 scaffold818 SAMTools SNP 315625 315625 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold818 SAMTools SNP 315635 315635 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C39%2C0:75 scaffold818 SAMTools SNP 316355 316355 64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D66.9%3BPV4%3D1%2C9.7e-10%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C109:97 scaffold818 SAMTools SNP 316847 316847 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold818 SAMTools SNP 349398 349398 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold818 SAMTools SNP 349939 349939 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold818 SAMTools SNP 350462 350462 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C14%2C0%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C4.8e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold818 SAMTools SNP 350519 350519 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold818 SAMTools SNP 351514 351514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C26%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold818 SAMTools SNP 351559 351559 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold818 SAMTools SNP 351745 351745 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold818 SAMTools SNP 352661 352661 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold818 SAMTools SNP 354628 354628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold818 SAMTools SNP 355813 355813 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold818 SAMTools SNP 355933 355933 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C204:99 scaffold818 SAMTools SNP 357842 357842 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold818 SAMTools SNP 357843 357843 52 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.2%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold818 SAMTools SNP 359849 359849 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold818 SAMTools SNP 362351 362351 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold818 SAMTools SNP 362382 362382 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.49%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold818 SAMTools SNP 364312 364312 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C27%2C0:51 scaffold818 SAMTools SNP 374846 374846 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold818 SAMTools SNP 375490 375490 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold818 SAMTools SNP 375493 375493 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold818 SAMTools SNP 375514 375514 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C35:38 scaffold818 SAMTools SNP 375535 375535 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold818 SAMTools SNP 377943 377943 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.00053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C82:58 scaffold818 SAMTools SNP 379769 379769 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D35%3BFQ%3D47%3BPV4%3D0.52%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C105:77 scaffold818 SAMTools SNP 379820 379820 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C6%2C3%3BMQ%3D42%3BFQ%3D98%3BPV4%3D0.65%2C0.2%2C0.12%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C237:99 scaffold818 SAMTools SNP 381679 381679 198 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C12%2C0%3BMQ%3D47%3BFQ%3D75%3BPV4%3D0.0021%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C102:99 scaffold818 SAMTools SNP 381817 381817 40.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold818 SAMTools SNP 382741 382741 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C116%2C122%2C86%3BMQ%3D50%3BFQ%3D132%3BPV4%3D2.3e-29%2C1.2e-171%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold818 SAMTools SNP 383476 383476 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold818 SAMTools SNP 383694 383694 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C138%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold818 SAMTools SNP 387101 387101 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold818 SAMTools SNP 387672 387672 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold818 SAMTools SNP 393868 393868 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold818 SAMTools SNP 394238 394238 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.56%2C0.16%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold818 SAMTools SNP 395442 395442 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold818 SAMTools SNP 395481 395481 19.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold818 SAMTools SNP 395566 395566 79 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.59%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold818 SAMTools SNP 395661 395661 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C207:99 scaffold818 SAMTools SNP 395670 395670 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold818 SAMTools SNP 395673 395673 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold818 SAMTools SNP 397954 397954 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold818 SAMTools SNP 398407 398407 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D7.1e-05%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold818 SAMTools SNP 401128 401128 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold818 SAMTools SNP 401421 401421 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold818 SAMTools SNP 401954 401954 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold818 SAMTools SNP 402084 402084 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold819 SAMTools SNP 7787 7787 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 7793 7793 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 8084 8084 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C30%2C0:55 scaffold819 SAMTools SNP 8106 8106 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D25%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C63%2C0:87 scaffold819 SAMTools SNP 8679 8679 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C27%2C8%2C27%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.6%2C9.6e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold819 SAMTools SNP 8748 8748 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C18%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C2.8e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C246:71 scaffold819 SAMTools SNP 36025 36025 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold819 SAMTools SNP 36340 36340 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold819 SAMTools SNP 36948 36948 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 63153 63153 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C7%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold819 SAMTools SNP 64074 64074 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C74%2C6%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold819 SAMTools SNP 64122 64122 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C44%2C6%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold819 SAMTools SNP 64599 64599 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C7%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold819 SAMTools SNP 64605 64605 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C5%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold819 SAMTools SNP 65327 65327 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C25%3BMQ%3D50%3BFQ%3D-99%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold819 SAMTools SNP 65378 65378 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold819 SAMTools SNP 65616 65616 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C13%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D3.6e-05%2C4e-09%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold819 SAMTools SNP 65979 65979 220 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C33%2C0:63 scaffold819 SAMTools SNP 66030 66030 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold819 SAMTools SNP 66410 66410 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C30%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:196%2C132%2C0:99 scaffold819 SAMTools SNP 66464 66464 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C25%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold819 SAMTools SNP 66807 66807 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C12%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold819 SAMTools SNP 66828 66828 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold819 SAMTools SNP 66900 66900 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold819 SAMTools SNP 67283 67283 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C9%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold819 SAMTools SNP 67301 67301 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold819 SAMTools SNP 67871 67871 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.26%2C0.088%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold819 SAMTools SNP 68797 68797 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold819 SAMTools SNP 68803 68803 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 68815 68815 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 70416 70416 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C0%3BMQ%3D46%3BFQ%3D35%3BPV4%3D0.51%2C1%2C0.0063%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold819 SAMTools SNP 70444 70444 213 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C39%2C0:75 scaffold819 SAMTools SNP 70649 70649 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold819 SAMTools SNP 70718 70718 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C31%2C2%2C5%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.23%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold819 SAMTools SNP 71093 71093 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C31%2C2%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.24%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold819 SAMTools SNP 71224 71224 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold819 SAMTools SNP 71236 71236 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C9%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold819 SAMTools SNP 71923 71923 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C0.24%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C193:99 scaffold819 SAMTools SNP 71948 71948 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 75466 75466 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 75489 75489 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold819 SAMTools SNP 78539 78539 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C9%2C3%2C14%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.00022%2C1%2C1%2C5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold819 SAMTools SNP 79119 79119 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C63%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 1981 1981 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 3155 3155 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C146%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 3175 3175 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C145%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 3425 3425 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C18%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold82 SAMTools SNP 4109 4109 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C35%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 4451 4451 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C7%2C1%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold82 SAMTools SNP 5101 5101 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C8%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.0082%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold82 SAMTools SNP 5103 5103 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.041%2C0.0096%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold82 SAMTools SNP 5535 5535 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 5602 5602 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 5629 5629 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 6040 6040 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 6079 6079 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold82 SAMTools SNP 6085 6085 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold82 SAMTools SNP 6499 6499 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 6505 6505 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold82 SAMTools SNP 6535 6535 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold82 SAMTools SNP 7639 7639 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold82 SAMTools SNP 7645 7645 222 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0%2C247%2C31%2C244:99 scaffold82 SAMTools SNP 7705 7705 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold82 SAMTools SNP 8142 8142 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold82 SAMTools SNP 10441 10441 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 10451 10451 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold82 SAMTools SNP 11039 11039 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 11081 11081 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.55%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold82 SAMTools SNP 11105 11105 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold82 SAMTools SNP 11487 11487 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 11518 11518 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold82 SAMTools SNP 11542 11542 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold82 SAMTools SNP 11664 11664 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 51877 51877 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 90276 90276 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold82 SAMTools SNP 96404 96404 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C5%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold82 SAMTools SNP 99996 99996 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C18%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 100752 100752 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C3%2C16%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.17%2C1%2C0.14%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 103016 103016 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C9.7e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C69:42 scaffold82 SAMTools SNP 105242 105242 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C10%3BMQ%3D48%3BFQ%3D223%3BPV4%3D0.36%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold82 SAMTools SNP 106873 106873 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold82 SAMTools SNP 107483 107483 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C16%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 107492 107492 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C14%2C29%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold82 SAMTools SNP 108601 108601 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold82 SAMTools SNP 111469 111469 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold82 SAMTools SNP 115626 115626 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C79:40 scaffold82 SAMTools SNP 115665 115665 189 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.27%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C127:99 scaffold82 SAMTools SNP 116734 116734 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C138:99 scaffold82 SAMTools SNP 116756 116756 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold82 SAMTools SNP 116849 116849 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold82 SAMTools SNP 117174 117174 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold82 SAMTools SNP 118371 118371 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold82 SAMTools SNP 118382 118382 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.55%2C0.013%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold82 SAMTools SNP 119118 119118 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold82 SAMTools SNP 119148 119148 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold82 SAMTools SNP 119236 119236 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold82 SAMTools SNP 119248 119248 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold82 SAMTools SNP 121108 121108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold82 SAMTools SNP 121324 121324 39 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold82 SAMTools SNP 122555 122555 62 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C39%2C0:75 scaffold82 SAMTools SNP 122674 122674 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C214:99 scaffold82 SAMTools SNP 123085 123085 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 123280 123280 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 124098 124098 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 124268 124268 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold82 SAMTools SNP 124292 124292 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.44%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C223:99 scaffold82 SAMTools SNP 124569 124569 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C218:99 scaffold82 SAMTools SNP 124686 124686 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.24%2C0.013%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C217:99 scaffold82 SAMTools SNP 124738 124738 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold82 SAMTools SNP 124782 124782 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold82 SAMTools SNP 124937 124937 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 126018 126018 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C22%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold82 SAMTools SNP 127405 127405 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.5%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold82 SAMTools SNP 127466 127466 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C20%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.0077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold82 SAMTools SNP 127654 127654 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D136%3BPV4%3D5.7e-06%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold82 SAMTools SNP 127944 127944 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.011%2C0.46%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C105:99 scaffold82 SAMTools SNP 127962 127962 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0019%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold82 SAMTools SNP 128205 128205 201 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C14%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.0019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold82 SAMTools SNP 129359 129359 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.074%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold82 SAMTools SNP 129408 129408 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0074%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C19%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C2.9e-05%2C1%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold82 SAMTools SNP 129422 129422 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C1%2C4%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.23%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold82 SAMTools SNP 129467 129467 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold82 SAMTools SNP 130056 130056 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 130459 130459 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 131083 131083 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.4%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C193:95 scaffold82 SAMTools SNP 131256 131256 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold82 SAMTools SNP 131289 131289 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold82 SAMTools SNP 131751 131751 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C3%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold82 SAMTools SNP 131775 131775 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold82 SAMTools SNP 132120 132120 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.39%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 132316 132316 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C3%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold82 SAMTools SNP 132358 132358 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C13%2C21%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 132377 132377 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C10%2C24%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 132613 132613 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C62%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold82 SAMTools SNP 132787 132787 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C26%2C43%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 132808 132808 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C9%2C32%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.024%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold82 SAMTools SNP 132875 132875 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C101%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 133043 133043 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C30%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.041%2C1%2C1%2C5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold82 SAMTools SNP 133094 133094 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C1%2C9%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold82 SAMTools SNP 133104 133104 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold82 SAMTools SNP 133327 133327 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 133661 133661 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold82 SAMTools SNP 133662 133662 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold82 SAMTools SNP 135663 135663 22.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C6%2C0:10 scaffold82 SAMTools SNP 135727 135727 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold82 SAMTools SNP 136255 136255 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold82 SAMTools SNP 142413 142413 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold82 SAMTools SNP 142708 142708 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C247:31 scaffold82 SAMTools SNP 143076 143076 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 143229 143229 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C51%2C0:98 scaffold82 SAMTools SNP 167708 167708 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.022%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C197:66 scaffold82 SAMTools SNP 167977 167977 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold82 SAMTools SNP 168010 168010 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold82 SAMTools SNP 169606 169606 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 169879 169879 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold82 SAMTools SNP 170433 170433 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold82 SAMTools SNP 170457 170457 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 170487 170487 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold82 SAMTools SNP 171030 171030 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold82 SAMTools SNP 171102 171102 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold82 SAMTools SNP 171369 171369 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C144:99 scaffold82 SAMTools SNP 171396 171396 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.43%2C0.1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C167:42 scaffold82 SAMTools SNP 171446 171446 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 172411 172411 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold82 SAMTools SNP 174383 174383 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C16%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold82 SAMTools SNP 174808 174808 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold82 SAMTools SNP 174845 174845 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold82 SAMTools SNP 178980 178980 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold82 SAMTools SNP 181292 181292 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C3%3BMQ%3D47%3BFQ%3D139%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold82 SAMTools SNP 181297 181297 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D47%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold82 SAMTools SNP 182986 182986 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C16%3BMQ%3D48%3BFQ%3D150%3BPV4%3D1%2C0.29%2C0.17%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C177:99 scaffold82 SAMTools SNP 183471 183471 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 186192 186192 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 186228 186228 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C32%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 186444 186444 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C2%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold82 SAMTools SNP 187106 187106 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold82 SAMTools SNP 187299 187299 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.18%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C211:39 scaffold82 SAMTools SNP 191943 191943 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 191971 191971 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold82 SAMTools SNP 193857 193857 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D49%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C54%2C0:88 scaffold82 SAMTools SNP 201758 201758 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold82 SAMTools SNP 201870 201870 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 202797 202797 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 203723 203723 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold82 SAMTools SNP 203948 203948 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 203990 203990 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold82 SAMTools SNP 205021 205021 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold82 SAMTools SNP 206701 206701 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 207014 207014 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 207908 207908 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 209613 209613 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C2%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold82 SAMTools SNP 209688 209688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C18%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D5.4e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold82 SAMTools SNP 209713 209713 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C18%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold82 SAMTools SNP 211624 211624 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold82 SAMTools SNP 211642 211642 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold82 SAMTools SNP 211820 211820 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 218598 218598 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 221712 221712 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold82 SAMTools SNP 229515 229515 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C36:39 scaffold82 SAMTools SNP 230547 230547 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold82 SAMTools SNP 234655 234655 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold82 SAMTools SNP 236152 236152 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold82 SAMTools SNP 236688 236688 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold82 SAMTools SNP 238041 238041 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 238049 238049 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold82 SAMTools SNP 238072 238072 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C4.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C172:99 scaffold82 SAMTools SNP 238731 238731 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold82 SAMTools SNP 238784 238784 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold82 SAMTools SNP 238918 238918 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold82 SAMTools SNP 244318 244318 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.05%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold82 SAMTools SNP 244336 244336 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.14%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold82 SAMTools SNP 244472 244472 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C145:99 scaffold82 SAMTools SNP 244542 244542 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.38%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C171:52 scaffold82 SAMTools SNP 245003 245003 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 245054 245054 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 279255 279255 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold82 SAMTools SNP 279264 279264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C0%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold82 SAMTools SNP 279972 279972 35.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold82 SAMTools SNP 290729 290729 17.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C127%2C2%2C115%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1.6e-22%2C7.8e-155%2C1%2C0.00011;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold82 SAMTools SNP 298006 298006 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold82 SAMTools SNP 298433 298433 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold82 SAMTools SNP 298552 298552 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0225%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.18%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold82 SAMTools SNP 299848 299848 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 299931 299931 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.37%2C0.41%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C212:99 scaffold82 SAMTools SNP 300127 300127 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.25%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C219:91 scaffold82 SAMTools SNP 300139 300139 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C36:39 scaffold82 SAMTools SNP 300771 300771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 301254 301254 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 301332 301332 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 303693 303693 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 308052 308052 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 321809 321809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 322562 322562 25.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold82 SAMTools SNP 323529 323529 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold82 SAMTools SNP 323593 323593 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 323605 323605 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold82 SAMTools SNP 323891 323891 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 324047 324047 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C0.0032%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold82 SAMTools SNP 335291 335291 6.17 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold82 SAMTools SNP 337069 337069 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold82 SAMTools SNP 341151 341151 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold82 SAMTools SNP 341567 341567 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold82 SAMTools SNP 343443 343443 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold82 SAMTools SNP 347905 347905 46.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold82 SAMTools SNP 354506 354506 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.29%2C1.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold82 SAMTools SNP 354533 354533 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D4.11%3BPV4%3D1%2C2.7e-07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C29:32 scaffold82 SAMTools SNP 354815 354815 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C5.3e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C26:29 scaffold82 SAMTools SNP 370406 370406 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold82 SAMTools SNP 371273 371273 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold82 SAMTools SNP 371590 371590 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold82 SAMTools SNP 371606 371606 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C41:44 scaffold82 SAMTools SNP 371623 371623 54 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C9%2C0:16 scaffold82 SAMTools SNP 371701 371701 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 371991 371991 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold82 SAMTools SNP 372006 372006 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 372267 372267 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0281%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.00057%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C158:30 scaffold82 SAMTools SNP 372634 372634 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C4%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.5e-12%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 373108 373108 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold82 SAMTools SNP 373147 373147 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold82 SAMTools SNP 373159 373159 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold82 SAMTools SNP 373939 373939 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold82 SAMTools SNP 373945 373945 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold82 SAMTools SNP 374044 374044 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C48%2C0:93 scaffold82 SAMTools SNP 374119 374119 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold82 SAMTools SNP 374913 374913 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold82 SAMTools SNP 374987 374987 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold82 SAMTools SNP 375024 375024 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold82 SAMTools SNP 375102 375102 133 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C18%2C0:33 scaffold82 SAMTools SNP 376197 376197 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 376210 376210 224 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold82 SAMTools SNP 377098 377098 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0099%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold82 SAMTools SNP 378386 378386 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 378524 378524 51 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C42%2C0:80 scaffold82 SAMTools SNP 378672 378672 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C51%2C0:99 scaffold82 SAMTools SNP 379156 379156 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C16%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 379486 379486 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C33%2C0:63 scaffold82 SAMTools SNP 379606 379606 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.16%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold82 SAMTools SNP 379740 379740 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold82 SAMTools SNP 379973 379973 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.17%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold82 SAMTools SNP 379984 379984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 380262 380262 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.061%2C0.42%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C217:99 scaffold82 SAMTools SNP 380840 380840 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C26%2C6%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.14%2C5.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold82 SAMTools SNP 380868 380868 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C16%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C93%2C0:99 scaffold82 SAMTools SNP 381114 381114 62.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C21%2C0:39 scaffold82 SAMTools SNP 382920 382920 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C38%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C117%2C0:99 scaffold82 SAMTools SNP 388668 388668 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold82 SAMTools SNP 388837 388837 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold82 SAMTools SNP 388863 388863 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 389875 389875 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold82 SAMTools SNP 394538 394538 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 424358 424358 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C48%2C0:93 scaffold82 SAMTools SNP 424378 424378 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D40%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C48%2C0:93 scaffold82 SAMTools SNP 518348 518348 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C7%2C50%3BMQ%3D46%3BFQ%3D166%3BPV4%3D0.5%2C1.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C193:99 scaffold82 SAMTools SNP 520211 520211 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C4%2C6%3BMQ%3D48%3BFQ%3D99%3BPV4%3D0.7%2C8.1e-27%2C0.43%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold82 SAMTools SNP 520525 520525 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D30%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C102%2C0:90 scaffold82 SAMTools SNP 520759 520759 59.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C12%2C0:21 scaffold82 SAMTools SNP 520841 520841 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C30%2C17%2C1%3BMQ%3D49%3BFQ%3D73%3BPV4%3D0.0099%2C4.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold82 SAMTools SNP 521304 521304 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold82 SAMTools SNP 538172 538172 79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C132%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C255%2C0:99 scaffold82 SAMTools SNP 538247 538247 46.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C15%2C0:27 scaffold82 SAMTools SNP 538358 538358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C0%2C34%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 538370 538370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C84%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 539311 539311 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C46%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold82 SAMTools SNP 539847 539847 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C54%2C9%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 539920 539920 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.0041%2C4e-05%2C1%2C3.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold82 SAMTools SNP 539981 539981 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C13%2C7%2C32%3BMQ%3D50%3BFQ%3D146%3BPV4%3D2.5e-06%2C1.4e-52%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold82 SAMTools SNP 540053 540053 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C4%2C9%2C4%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.012%2C5.6e-08%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold82 SAMTools SNP 540574 540574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 540650 540650 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C80%2C54%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D2.9e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold82 SAMTools SNP 540653 540653 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C129%2C69%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 540925 540925 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold82 SAMTools SNP 540928 540928 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C13%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.00013%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold82 SAMTools SNP 540932 540932 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C26%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold82 SAMTools SNP 541518 541518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 541587 541587 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 541605 541605 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold82 SAMTools SNP 545154 545154 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold82 SAMTools SNP 545181 545181 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 545710 545710 103 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C24%2C0:45 scaffold82 SAMTools SNP 545748 545748 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D425%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C8%2C277%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 545814 545814 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C102%2C311%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 546040 546040 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C78%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 546113 546113 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D496%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C409%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 546324 546324 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D687%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C187%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 546346 546346 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D782%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C354%2C428%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 546913 546913 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D112%2C39%2C154%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 546939 546939 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D492%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C272%2C220%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold82 SAMTools SNP 547780 547780 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold82 SAMTools SNP 547861 547861 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C180%2C46%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 548226 548226 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C84%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold82 SAMTools SNP 548228 548228 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C80%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold82 SAMTools SNP 549616 549616 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1391%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C335%2C22%2C1033%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C103:99 scaffold82 SAMTools SNP 549871 549871 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C45%2C0%2C17%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.32%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold82 SAMTools SNP 555224 555224 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C96%2C0:99 scaffold82 SAMTools SNP 555460 555460 39.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold82 SAMTools SNP 555538 555538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold82 SAMTools SNP 555565 555565 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C49%2C3%2C10%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.14%2C1%2C1%2C1.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold82 SAMTools SNP 574557 574557 119 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C31%2C5%3BMQ%3D49%3BFQ%3D122%3BPV4%3D1%2C1.7e-36%2C0.06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold82 SAMTools SNP 574863 574863 26 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.024%2C5.5e-16%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C96:59 scaffold82 SAMTools SNP 575263 575263 4.78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5011%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.74%3BPV4%3D1%2C6.3e-11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C23:28 scaffold82 SAMTools SNP 575393 575393 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.45%2C0.015%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold82 SAMTools SNP 579512 579512 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 579653 579653 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold82 SAMTools SNP 579700 579700 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold82 SAMTools SNP 595426 595426 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold82 SAMTools SNP 673149 673149 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 677253 677253 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold82 SAMTools SNP 677261 677261 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold82 SAMTools SNP 678593 678593 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 678597 678597 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 682937 682937 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 683339 683339 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold82 SAMTools SNP 690655 690655 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold82 SAMTools SNP 761405 761405 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C13%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C4.2e-09%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C48:51 scaffold82 SAMTools SNP 761416 761416 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C61%3BMQ%3D50%3BFQ%3D41.3%3BPV4%3D0.0011%2C1.9e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C73:71 scaffold82 SAMTools SNP 761526 761526 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 761543 761543 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold82 SAMTools SNP 779665 779665 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 781866 781866 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 781887 781887 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold82 SAMTools SNP 782285 782285 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold82 SAMTools SNP 783565 783565 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 783566 783566 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 785318 785318 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 785351 785351 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold82 SAMTools SNP 785371 785371 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold82 SAMTools SNP 785409 785409 167 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C0.11%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C248:99 scaffold82 SAMTools SNP 785849 785849 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold82 SAMTools SNP 785897 785897 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold82 SAMTools SNP 785953 785953 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 786023 786023 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold82 SAMTools SNP 786175 786175 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.9%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C41:44 scaffold82 SAMTools SNP 786256 786256 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 786306 786306 108 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.27%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold82 SAMTools SNP 786457 786457 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold82 SAMTools SNP 786552 786552 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0201%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold82 SAMTools SNP 786589 786589 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold82 SAMTools SNP 786875 786875 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold82 SAMTools SNP 788564 788564 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C41:40 scaffold82 SAMTools SNP 789003 789003 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 789620 789620 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 789661 789661 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold82 SAMTools SNP 790037 790037 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C0.22%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C102:99 scaffold82 SAMTools SNP 790603 790603 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold82 SAMTools SNP 790666 790666 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 792642 792642 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold82 SAMTools SNP 792932 792932 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C17%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold82 SAMTools SNP 792966 792966 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 793241 793241 222 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0%2C246%2C19%2C243:99 scaffold82 SAMTools SNP 797075 797075 12.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold82 SAMTools SNP 797789 797789 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold82 SAMTools SNP 797801 797801 96 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C56%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C217%2C0:99 scaffold82 SAMTools SNP 798244 798244 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C8%2C46%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1.9e-74%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 798303 798303 180 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C31%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C202%2C0:99 scaffold82 SAMTools SNP 798390 798390 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D280%2C29%2C339%2C32%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.79%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold82 SAMTools SNP 799246 799246 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C33%2C0:63 scaffold82 SAMTools SNP 799492 799492 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D571%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C279%2C2%2C227%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1.2e-12%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold82 SAMTools SNP 799975 799975 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C25%2C15%2C45%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0034%2C7.1e-49%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold82 SAMTools SNP 800270 800270 37.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D809%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold82 SAMTools SNP 800535 800535 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C71%2C104%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C7.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C255%2C0:99 scaffold82 SAMTools SNP 800597 800597 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold82 SAMTools SNP 801878 801878 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold82 SAMTools SNP 805871 805871 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C0%2C15%2C2%3BMQ%3D49%3BFQ%3D195%3BPV4%3D0.06%2C6.7e-05%2C0.37%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C238:99 scaffold82 SAMTools SNP 807404 807404 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C0.027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 807488 807488 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C2%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold82 SAMTools SNP 807885 807885 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 808045 808045 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C12%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold82 SAMTools SNP 809671 809671 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 809672 809672 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 810074 810074 169 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C9%2C12%2C8%3BMQ%3D29%3BFQ%3D172%3BPV4%3D0.059%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold82 SAMTools SNP 810079 810079 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C45%2C9%3BMQ%3D28%3BFQ%3D135%3BPV4%3D0.055%2C1%2C0.029%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold82 SAMTools SNP 810093 810093 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C9%2C11%2C5%3BMQ%3D26%3BFQ%3D76%3BPV4%3D0.28%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C252:99 scaffold82 SAMTools SNP 810449 810449 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 810784 810784 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold82 SAMTools SNP 810797 810797 199 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C27%2C0:51 scaffold82 SAMTools SNP 811176 811176 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold82 SAMTools SNP 815416 815416 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 816376 816376 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 819469 819469 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold82 SAMTools SNP 819979 819979 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D49%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold82 SAMTools SNP 820031 820031 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C126:34 scaffold82 SAMTools SNP 820614 820614 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C4%2C5%2C0%3BMQ%3D49%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold82 SAMTools SNP 821285 821285 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C5%3BMQ%3D38%3BFQ%3D109%3BPV4%3D0.45%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C223:99 scaffold82 SAMTools SNP 827492 827492 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 828876 828876 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 829295 829295 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 830173 830173 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 830191 830191 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 830233 830233 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold82 SAMTools SNP 830750 830750 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C12%2C0:21 scaffold82 SAMTools SNP 830896 830896 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 831444 831444 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D35%3BFQ%3D10.6%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C45:39 scaffold82 SAMTools SNP 832162 832162 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold82 SAMTools SNP 833238 833238 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 833273 833273 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C78:43 scaffold82 SAMTools SNP 833315 833315 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D3.43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C28:31 scaffold82 SAMTools SNP 833316 833316 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C65:43 scaffold82 SAMTools SNP 841286 841286 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold82 SAMTools SNP 841297 841297 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C9%2C8%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.66%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold82 SAMTools SNP 842389 842389 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C24%3BMQ%3D50%3BFQ%3D220%3BPV4%3D8.2e-07%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold82 SAMTools SNP 842416 842416 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C3%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0049%2C0.44%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C239:99 scaffold82 SAMTools SNP 842427 842427 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C23%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.38%2C1%2C1%2C5.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold82 SAMTools SNP 843309 843309 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 843336 843336 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 849321 849321 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold82 SAMTools SNP 851704 851704 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold82 SAMTools SNP 854746 854746 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.088%2C7.7e-07%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold82 SAMTools SNP 855103 855103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C2%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold82 SAMTools SNP 855406 855406 90.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C18%2C0:33 scaffold82 SAMTools SNP 856030 856030 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold82 SAMTools SNP 856104 856104 98 . . REF=A;ALT=T,C,G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C27%2C0%2C125%2C11%2C122%2C129%2C15%2C120%2C126:51 scaffold82 SAMTools SNP 863081 863081 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold82 SAMTools SNP 863288 863288 43.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C15%2C0:27 scaffold82 SAMTools SNP 863549 863549 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold82 SAMTools SNP 864169 864169 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold82 SAMTools SNP 864219 864219 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold82 SAMTools SNP 864585 864585 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold82 SAMTools SNP 864597 864597 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold82 SAMTools SNP 864645 864645 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.18%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold82 SAMTools SNP 865006 865006 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C21%2C0:39 scaffold82 SAMTools SNP 865075 865075 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold82 SAMTools SNP 865609 865609 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C15%2C0:27 scaffold82 SAMTools SNP 885089 885089 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 886220 886220 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 886249 886249 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 886266 886266 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 886899 886899 30 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold82 SAMTools SNP 886934 886934 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold82 SAMTools SNP 887537 887537 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C243:99 scaffold82 SAMTools SNP 888374 888374 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 892678 892678 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold82 SAMTools SNP 900505 900505 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 900506 900506 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold82 SAMTools SNP 901181 901181 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C157:30 scaffold82 SAMTools SNP 901242 901242 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.021%2C0.0081%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C186:99 scaffold82 SAMTools SNP 904705 904705 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0012%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.2%2C0.0032%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C202:53 scaffold82 SAMTools SNP 904718 904718 73.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C167%2C149%2C186%2C0%2C174:33 scaffold82 SAMTools SNP 906019 906019 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold82 SAMTools SNP 906058 906058 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold82 SAMTools SNP 908843 908843 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C14%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold82 SAMTools SNP 908890 908890 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold82 SAMTools SNP 912409 912409 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold82 SAMTools SNP 912523 912523 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.075%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold82 SAMTools SNP 920635 920635 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C201:28 scaffold82 SAMTools SNP 942457 942457 173 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1.3e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold82 SAMTools SNP 942474 942474 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C0%2C37%2C0%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold82 SAMTools SNP 943668 943668 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.025%2C0.00084%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold82 SAMTools SNP 943695 943695 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.42%2C0.016%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold82 SAMTools SNP 943707 943707 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold82 SAMTools SNP 944627 944627 35 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.28%2C1%2C1%2C3.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold82 SAMTools SNP 944681 944681 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C12%2C0%3BMQ%3D50%3BFQ%3D172%3BPV4%3D3.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold82 SAMTools SNP 950010 950010 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C14%2C12%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.65%2C0.36%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold82 SAMTools SNP 950049 950049 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold82 SAMTools SNP 950294 950294 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C18%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold82 SAMTools SNP 950312 950312 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold82 SAMTools SNP 950518 950518 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold82 SAMTools SNP 952933 952933 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C5%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold82 SAMTools SNP 952984 952984 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C28%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold82 SAMTools SNP 953556 953556 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold82 SAMTools SNP 958442 958442 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 958568 958568 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold82 SAMTools SNP 958577 958577 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D70%3BPV4%3D1%2C0.47%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold82 SAMTools SNP 961762 961762 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 962271 962271 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0062%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold82 SAMTools SNP 962274 962274 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold82 SAMTools SNP 963210 963210 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold82 SAMTools SNP 974244 974244 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 980795 980795 3.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold82 SAMTools SNP 980946 980946 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C241:63 scaffold82 SAMTools SNP 982025 982025 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C183:99 scaffold82 SAMTools SNP 982935 982935 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 984459 984459 117 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C236:99 scaffold82 SAMTools SNP 985470 985470 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 985493 985493 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 985494 985494 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold82 SAMTools SNP 985509 985509 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold82 SAMTools SNP 985537 985537 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold82 SAMTools SNP 986019 986019 129 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.51%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold82 SAMTools SNP 986040 986040 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold82 SAMTools SNP 986079 986079 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C11%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.51%2C0.13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold82 SAMTools SNP 986106 986106 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.31%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold82 SAMTools SNP 986115 986115 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.33%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold82 SAMTools SNP 986902 986902 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold82 SAMTools SNP 986964 986964 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold82 SAMTools SNP 986989 986989 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 987001 987001 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold82 SAMTools SNP 987604 987604 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold82 SAMTools SNP 988684 988684 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold82 SAMTools SNP 988711 988711 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold82 SAMTools SNP 991020 991020 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold82 SAMTools SNP 991307 991307 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold82 SAMTools SNP 991539 991539 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold82 SAMTools SNP 991597 991597 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold82 SAMTools SNP 991657 991657 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C116:99 scaffold82 SAMTools SNP 991747 991747 83 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.17%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C228:99 scaffold82 SAMTools SNP 991779 991779 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C0.14%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold82 SAMTools SNP 992363 992363 146 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C7%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold82 SAMTools SNP 992423 992423 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.54%2C1%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold82 SAMTools SNP 992463 992463 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold82 SAMTools SNP 992622 992622 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold82 SAMTools SNP 992651 992651 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C2%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.59%2C0.076%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C248:99 scaffold82 SAMTools SNP 995015 995015 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold82 SAMTools SNP 995236 995236 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C4%2C9%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.75%2C4.6e-31%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold82 SAMTools SNP 995788 995788 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C114%2C0:99 scaffold82 SAMTools SNP 996340 996340 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0125%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C35:38 scaffold82 SAMTools SNP 996607 996607 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.9e-17%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold82 SAMTools SNP 997959 997959 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C18%2C0:33 scaffold82 SAMTools SNP 1001254 1001254 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold82 SAMTools SNP 1016770 1016770 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold82 SAMTools SNP 1020208 1020208 30.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold82 SAMTools SNP 1020964 1020964 53.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold82 SAMTools SNP 1025079 1025079 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold82 SAMTools SNP 1026212 1026212 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D47%3BFQ%3D5.47%3BPV4%3D1%2C3.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C173:30 scaffold82 SAMTools SNP 1026637 1026637 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold82 SAMTools SNP 1038638 1038638 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold823 SAMTools SNP 3361 3361 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 3409 3409 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 3471 3471 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 3511 3511 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 51126 51126 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 63289 63289 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold823 SAMTools SNP 67657 67657 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold823 SAMTools SNP 81473 81473 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold823 SAMTools SNP 81503 81503 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 36637 36637 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C0.053%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold825 SAMTools SNP 37767 37767 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D49%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C227:41 scaffold825 SAMTools SNP 68367 68367 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold825 SAMTools SNP 108421 108421 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 108463 108463 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 109382 109382 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold825 SAMTools SNP 109677 109677 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 109694 109694 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 122437 122437 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 125282 125282 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 125305 125305 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold825 SAMTools SNP 125473 125473 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 153184 153184 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold825 SAMTools SNP 153944 153944 183 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold825 SAMTools SNP 154058 154058 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 154140 154140 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold825 SAMTools SNP 155113 155113 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold825 SAMTools SNP 155201 155201 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C15%2C0:27 scaffold825 SAMTools SNP 155329 155329 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold825 SAMTools SNP 160904 160904 59.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C21%2C0:39 scaffold825 SAMTools SNP 161447 161447 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 178277 178277 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C42%2C0:81 scaffold825 SAMTools SNP 178357 178357 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 178786 178786 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 185880 185880 4.61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold825 SAMTools SNP 187365 187365 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold825 SAMTools SNP 188647 188647 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 194617 194617 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.14%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C121:40 scaffold825 SAMTools SNP 198128 198128 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold825 SAMTools SNP 198138 198138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold825 SAMTools SNP 198171 198171 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold825 SAMTools SNP 198530 198530 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold825 SAMTools SNP 198539 198539 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold825 SAMTools SNP 198678 198678 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C18%2C0:33 scaffold825 SAMTools SNP 198701 198701 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold825 SAMTools SNP 198731 198731 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold825 SAMTools SNP 200663 200663 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold825 SAMTools SNP 200690 200690 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold825 SAMTools SNP 200711 200711 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 200714 200714 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 200741 200741 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C86:49 scaffold825 SAMTools SNP 203608 203608 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D34.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C63:64 scaffold825 SAMTools SNP 203612 203612 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C23:26 scaffold825 SAMTools SNP 204108 204108 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold825 SAMTools SNP 204351 204351 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C39%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold825 SAMTools SNP 204378 204378 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C42%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold825 SAMTools SNP 204734 204734 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold825 SAMTools SNP 206520 206520 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C17%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold825 SAMTools SNP 206601 206601 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C9%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.48%2C0.0012%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold825 SAMTools SNP 206643 206643 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold825 SAMTools SNP 206990 206990 17.1 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold825 SAMTools SNP 207070 207070 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold825 SAMTools SNP 207087 207087 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold825 SAMTools SNP 207547 207547 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C13%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.37%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 207962 207962 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C22%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold825 SAMTools SNP 207989 207989 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold825 SAMTools SNP 208909 208909 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.26%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C216:62 scaffold825 SAMTools SNP 208921 208921 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.12%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C198:99 scaffold825 SAMTools SNP 209220 209220 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C152:99 scaffold825 SAMTools SNP 209252 209252 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C73:76 scaffold825 SAMTools SNP 209963 209963 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C13%2C39%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 210177 210177 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C20%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 210248 210248 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C27%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C0.022%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold825 SAMTools SNP 210858 210858 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C10%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold825 SAMTools SNP 210924 210924 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold825 SAMTools SNP 210933 210933 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C0.3%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold825 SAMTools SNP 211332 211332 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold825 SAMTools SNP 211400 211400 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0039%2C0.00015%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold825 SAMTools SNP 211760 211760 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold825 SAMTools SNP 212492 212492 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold825 SAMTools SNP 212508 212508 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C12%2C0:21 scaffold825 SAMTools SNP 212592 212592 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.7%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C44:43 scaffold825 SAMTools SNP 213107 213107 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold825 SAMTools SNP 213140 213140 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.52%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold825 SAMTools SNP 213155 213155 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold825 SAMTools SNP 213673 213673 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C10%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold825 SAMTools SNP 213730 213730 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold825 SAMTools SNP 213982 213982 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.12%2C0.11%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold825 SAMTools SNP 214009 214009 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.44%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C245:99 scaffold825 SAMTools SNP 214464 214464 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold825 SAMTools SNP 214963 214963 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C175:99 scaffold825 SAMTools SNP 215026 215026 117 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold825 SAMTools SNP 218306 218306 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold825 SAMTools SNP 218476 218476 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 219029 219029 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C17%2C2%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.08%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold825 SAMTools SNP 219153 219153 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold825 SAMTools SNP 219531 219531 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold825 SAMTools SNP 220127 220127 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.011%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold825 SAMTools SNP 220136 220136 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold825 SAMTools SNP 220139 220139 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.46%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C222:99 scaffold825 SAMTools SNP 220205 220205 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.041%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 220232 220232 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 237120 237120 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C5%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold825 SAMTools SNP 245779 245779 127 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold825 SAMTools SNP 246054 246054 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.19%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C148:99 scaffold825 SAMTools SNP 246317 246317 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold825 SAMTools SNP 248324 248324 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D904%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D253%2C322%2C51%2C278%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.8e-19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 248342 248342 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D527%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C266%2C14%2C185%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 248638 248638 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C85%2C20%2C7%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1.1e-05%2C0.0061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold825 SAMTools SNP 250964 250964 95 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C26%2C12%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0023%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold825 SAMTools SNP 254365 254365 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 258222 258222 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold825 SAMTools SNP 258440 258440 8.25 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D41%3BFQ%3D-29%3BPV4%3D1%2C0.087%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C27%2C25%2C37%2C0%2C35:4 scaffold825 SAMTools SNP 259449 259449 43 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C1%3BMQ%3D33%3BFQ%3D43.9%3BPV4%3D0.52%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C75:74 scaffold825 SAMTools SNP 259784 259784 65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D13%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C90%2C0:99 scaffold825 SAMTools SNP 259843 259843 52.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C2%2C9%3BMQ%3D30%3BFQ%3D-41%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C14%2C0:25 scaffold825 SAMTools SNP 260539 260539 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold825 SAMTools SNP 260542 260542 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0.022%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold825 SAMTools SNP 268706 268706 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold825 SAMTools SNP 275342 275342 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold825 SAMTools SNP 286389 286389 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.4%2C5.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C190:50 scaffold825 SAMTools SNP 287024 287024 36.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold825 SAMTools SNP 287203 287203 24.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold825 SAMTools SNP 287769 287769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C73%2C62%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C8.9e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 288466 288466 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 288568 288568 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.49%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold825 SAMTools SNP 289166 289166 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C2%2C23%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0037%2C0.088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 289232 289232 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C61%2C15%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 289235 289235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C61%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.26%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 290363 290363 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C47%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold825 SAMTools SNP 293454 293454 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C9%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.17%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold825 SAMTools SNP 293483 293483 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C14%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold825 SAMTools SNP 293725 293725 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C12%2C30%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 293733 293733 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 293769 293769 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C20%2C6%2C4%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold825 SAMTools SNP 293850 293850 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C46%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 294208 294208 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C5%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 294305 294305 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C32%2C1%2C13%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1.5e-05%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold825 SAMTools SNP 294353 294353 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C72%2C6%2C67%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C2.1e-05%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 295436 295436 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C56%2C25%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C0.3%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold825 SAMTools SNP 296274 296274 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 298268 298268 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 307290 307290 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold825 SAMTools SNP 308236 308236 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.09%2C3.9e-06%2C1%2C0.0077;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold825 SAMTools SNP 308521 308521 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 309693 309693 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C10%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold825 SAMTools SNP 309705 309705 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C11%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold825 SAMTools SNP 309771 309771 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C38%2C1%2C13%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold825 SAMTools SNP 309798 309798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C6%2C27%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.66%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold825 SAMTools SNP 310285 310285 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.11%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold825 SAMTools SNP 310602 310602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C38%2C2%3BMQ%3D50%3BFQ%3D-60%3BPV4%3D0.007%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold825 SAMTools SNP 311963 311963 50.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold825 SAMTools SNP 311964 311964 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C34:37 scaffold825 SAMTools SNP 311987 311987 60.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold825 SAMTools SNP 312092 312092 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C76:79 scaffold825 SAMTools SNP 312093 312093 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C143:79 scaffold825 SAMTools SNP 312116 312116 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold825 SAMTools SNP 312255 312255 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold825 SAMTools SNP 313126 313126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold825 SAMTools SNP 313482 313482 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold825 SAMTools SNP 313575 313575 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.0097%2C0.15%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold825 SAMTools SNP 314212 314212 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold825 SAMTools SNP 314218 314218 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C22%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold825 SAMTools SNP 314799 314799 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold825 SAMTools SNP 315672 315672 95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold825 SAMTools SNP 315945 315945 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold825 SAMTools SNP 315948 315948 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold825 SAMTools SNP 316048 316048 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold825 SAMTools SNP 316971 316971 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold825 SAMTools SNP 316990 316990 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold825 SAMTools SNP 317004 317004 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold825 SAMTools SNP 317567 317567 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold825 SAMTools SNP 318013 318013 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold825 SAMTools SNP 318079 318079 58 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold825 SAMTools SNP 318145 318145 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D44.3%3BPV4%3D1%2C1.4e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C73:74 scaffold825 SAMTools SNP 318244 318244 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.49%2C2.2e-12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C69:53 scaffold825 SAMTools SNP 318385 318385 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C24%2C0:45 scaffold825 SAMTools SNP 319000 319000 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold825 SAMTools SNP 319031 319031 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C4%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold825 SAMTools SNP 319137 319137 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold825 SAMTools SNP 319561 319561 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.045%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C106:99 scaffold825 SAMTools SNP 319563 319563 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.045%2C0.045%2C1%2C6.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C211:99 scaffold825 SAMTools SNP 320268 320268 8.65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold825 SAMTools SNP 320426 320426 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold825 SAMTools SNP 320442 320442 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold825 SAMTools SNP 320784 320784 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold825 SAMTools SNP 321357 321357 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold825 SAMTools SNP 321402 321402 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 321403 321403 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 321755 321755 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 321794 321794 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold825 SAMTools SNP 322266 322266 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold825 SAMTools SNP 322340 322340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold825 SAMTools SNP 322346 322346 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold825 SAMTools SNP 322399 322399 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold825 SAMTools SNP 323506 323506 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold825 SAMTools SNP 323513 323513 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold825 SAMTools SNP 323557 323557 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold825 SAMTools SNP 327119 327119 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold827 SAMTools SNP 1883 1883 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold827 SAMTools SNP 1905 1905 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold827 SAMTools SNP 3618 3618 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0166%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.35%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold827 SAMTools SNP 3648 3648 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold827 SAMTools SNP 10065 10065 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold827 SAMTools SNP 10125 10125 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold827 SAMTools SNP 10896 10896 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C18%2C0:33 scaffold827 SAMTools SNP 62107 62107 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold827 SAMTools SNP 63333 63333 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold827 SAMTools SNP 69495 69495 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold827 SAMTools SNP 70592 70592 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold827 SAMTools SNP 70765 70765 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold827 SAMTools SNP 72183 72183 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold827 SAMTools SNP 73984 73984 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold827 SAMTools SNP 74128 74128 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold827 SAMTools SNP 74156 74156 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.62%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold827 SAMTools SNP 74511 74511 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 74900 74900 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold827 SAMTools SNP 74930 74930 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.041%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold827 SAMTools SNP 74987 74987 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 75155 75155 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C0%2C22%3BMQ%3D50%3BFQ%3D162%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold827 SAMTools SNP 75221 75221 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C0%2C14%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.092%2C0.1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold827 SAMTools SNP 75435 75435 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.25%2C0.23%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold827 SAMTools SNP 75467 75467 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.042%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold827 SAMTools SNP 75625 75625 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.019%2C0.12%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold827 SAMTools SNP 75863 75863 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold827 SAMTools SNP 77117 77117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C7%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold827 SAMTools SNP 77659 77659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold827 SAMTools SNP 78337 78337 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold827 SAMTools SNP 78375 78375 161 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold827 SAMTools SNP 78667 78667 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 78723 78723 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C24%2C0%2C7%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.56%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold827 SAMTools SNP 79064 79064 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.0047%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold827 SAMTools SNP 79079 79079 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C9%2C0:16 scaffold827 SAMTools SNP 79229 79229 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold827 SAMTools SNP 80619 80619 72 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.57%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold827 SAMTools SNP 80666 80666 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold827 SAMTools SNP 80893 80893 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold827 SAMTools SNP 80911 80911 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C4%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.00044%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold827 SAMTools SNP 81022 81022 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.004%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold827 SAMTools SNP 81408 81408 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.076%2C6.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C219:41 scaffold827 SAMTools SNP 81469 81469 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold827 SAMTools SNP 81500 81500 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold827 SAMTools SNP 82089 82089 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold827 SAMTools SNP 82458 82458 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold827 SAMTools SNP 84281 84281 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.02%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold827 SAMTools SNP 85284 85284 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold827 SAMTools SNP 85309 85309 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0049%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold827 SAMTools SNP 108705 108705 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C15%2C63%3BMQ%3D46%3BFQ%3D-144%3BPV4%3D1%2C1%2C0.23%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold827 SAMTools SNP 109206 109206 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D16%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C30%2C0:47 scaffold827 SAMTools SNP 112415 112415 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C184%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold827 SAMTools SNP 113420 113420 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C1%2C70%2C0%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.00091;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold827 SAMTools SNP 114841 114841 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C14%2C9%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold827 SAMTools SNP 114895 114895 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D166%2C117%2C81%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 114927 114927 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D454%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C115%2C84%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.21%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 115369 115369 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C46%2C8%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold827 SAMTools SNP 115436 115436 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C180%2C0%2C52%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C8.4e-94%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold827 SAMTools SNP 119531 119531 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold827 SAMTools SNP 121920 121920 31.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold827 SAMTools SNP 127896 127896 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C25%2C57%2C23%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.24%2C1e-114%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold827 SAMTools SNP 128479 128479 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.49%2C1.9e-08%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold827 SAMTools SNP 128528 128528 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D47%3BPV4%3D2e-06%2C0.43%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold827 SAMTools SNP 129647 129647 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C43%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold827 SAMTools SNP 132227 132227 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C47%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold827 SAMTools SNP 133056 133056 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold827 SAMTools SNP 133086 133086 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C9%2C0:16 scaffold827 SAMTools SNP 133164 133164 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C9%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold827 SAMTools SNP 138354 138354 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.0098%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 140261 140261 133 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C15%2C7%2C12%3BMQ%3D50%3BFQ%3D136%3BPV4%3D3.8e-06%2C0.43%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold827 SAMTools SNP 149524 149524 28.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold827 SAMTools SNP 153706 153706 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold827 SAMTools SNP 154089 154089 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C0%3BMQ%3D47%3BFQ%3D19.1%3BPV4%3D1%2C0.026%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C215:49 scaffold827 SAMTools SNP 154124 154124 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C0%2C10%3BMQ%3D48%3BFQ%3D22%3BPV4%3D0.073%2C9.2e-07%2C0.45%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold827 SAMTools SNP 157835 157835 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C29%2C43%2C7%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.00023%2C0.46%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold827 SAMTools SNP 157874 157874 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C11%2C8%2C19%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.054%2C1%2C0.022%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 821 821 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold828 SAMTools SNP 866 866 60.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold828 SAMTools SNP 1718 1718 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold828 SAMTools SNP 2012 2012 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold828 SAMTools SNP 2105 2105 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold828 SAMTools SNP 2947 2947 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold828 SAMTools SNP 2952 2952 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.0028%2C1%2C7.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold828 SAMTools SNP 2965 2965 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold828 SAMTools SNP 3171 3171 12.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold828 SAMTools SNP 3322 3322 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C19%2C11%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 3765 3765 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C48%2C11%2C30%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 3900 3900 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C16%2C14%2C8%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.26%2C0.00047%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 3918 3918 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C0%3BMQ%3D48%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C172:99 scaffold828 SAMTools SNP 3939 3939 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C0%2C4%3BMQ%3D41%3BFQ%3D47%3BPV4%3D0.53%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold828 SAMTools SNP 4456 4456 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 4484 4484 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C13%3BMQ%3D46%3BFQ%3D192%3BPV4%3D0.23%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold828 SAMTools SNP 4565 4565 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold828 SAMTools SNP 4589 4589 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold828 SAMTools SNP 6388 6388 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold828 SAMTools SNP 6415 6415 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold828 SAMTools SNP 6437 6437 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold828 SAMTools SNP 9324 9324 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.46%2C0.14%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C193:39 scaffold828 SAMTools SNP 9772 9772 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold828 SAMTools SNP 22234 22234 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C21%2C0:39 scaffold828 SAMTools SNP 22247 22247 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C136:74 scaffold828 SAMTools SNP 22325 22325 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold828 SAMTools SNP 23775 23775 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold828 SAMTools SNP 23788 23788 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 30509 30509 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold828 SAMTools SNP 30530 30530 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold828 SAMTools SNP 30577 30577 22.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C12%2C0:21 scaffold828 SAMTools SNP 34288 34288 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold828 SAMTools SNP 34299 34299 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold828 SAMTools SNP 34712 34712 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 34732 34732 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 69996 69996 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold828 SAMTools SNP 72820 72820 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold828 SAMTools SNP 72975 72975 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold828 SAMTools SNP 79892 79892 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 86177 86177 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 86198 86198 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold828 SAMTools SNP 103846 103846 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold828 SAMTools SNP 104032 104032 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C4.5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C233:83 scaffold828 SAMTools SNP 104034 104034 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C224:99 scaffold828 SAMTools SNP 105949 105949 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.095%2C0.29%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold828 SAMTools SNP 105997 105997 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C53%2C3%2C12%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold828 SAMTools SNP 107003 107003 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D171%2C45%2C106%2C29%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.89%2C1%2C0.3%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 107033 107033 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D236%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C38%2C47%2C23%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.26%2C0.27%2C0.2%2C5.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 107100 107100 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C118%2C2%2C162%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 107814 107814 17.1 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold828 SAMTools SNP 107815 107815 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 108458 108458 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold828 SAMTools SNP 108471 108471 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold828 SAMTools SNP 110404 110404 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold828 SAMTools SNP 110933 110933 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold828 SAMTools SNP 110940 110940 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold828 SAMTools SNP 110943 110943 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold828 SAMTools SNP 111821 111821 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.38%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 111868 111868 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 112375 112375 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 113108 113108 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold828 SAMTools SNP 155255 155255 30.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold828 SAMTools SNP 155548 155548 92 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C54%2C0%2C117%2C34%2C114:99 scaffold828 SAMTools SNP 155587 155587 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold828 SAMTools SNP 158683 158683 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold828 SAMTools SNP 158704 158704 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.031%2C0.00018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold828 SAMTools SNP 159135 159135 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold828 SAMTools SNP 159444 159444 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D13.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C42:43 scaffold828 SAMTools SNP 160637 160637 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C20%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C5.2e-17%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C137:52 scaffold828 SAMTools SNP 168211 168211 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold828 SAMTools SNP 170607 170607 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.031%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold828 SAMTools SNP 170674 170674 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold828 SAMTools SNP 172377 172377 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold828 SAMTools SNP 175257 175257 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold829 SAMTools SNP 26386 26386 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.017%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold829 SAMTools SNP 27251 27251 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C30%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.48%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 29286 29286 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold829 SAMTools SNP 29292 29292 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold829 SAMTools SNP 29343 29343 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold829 SAMTools SNP 29349 29349 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold829 SAMTools SNP 30017 30017 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.47%2C0.075%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C164:34 scaffold829 SAMTools SNP 30094 30094 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold829 SAMTools SNP 31004 31004 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C34%2C0%2C29%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.5%2C3e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold829 SAMTools SNP 54917 54917 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold829 SAMTools SNP 58348 58348 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold829 SAMTools SNP 60262 60262 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 77829 77829 23.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold829 SAMTools SNP 78170 78170 20.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold829 SAMTools SNP 80910 80910 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C136:47 scaffold829 SAMTools SNP 85269 85269 9.49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold829 SAMTools SNP 130684 130684 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 160526 160526 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 160976 160976 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold829 SAMTools SNP 161808 161808 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold829 SAMTools SNP 161814 161814 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold829 SAMTools SNP 190699 190699 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold829 SAMTools SNP 258701 258701 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold829 SAMTools SNP 265453 265453 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C158:99 scaffold829 SAMTools SNP 265482 265482 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold829 SAMTools SNP 270010 270010 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.6%2C0.13%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold829 SAMTools SNP 270098 270098 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C5%2C3%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.14%2C0.13%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold829 SAMTools SNP 270158 270158 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 270515 270515 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C8%2C2%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.065%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold829 SAMTools SNP 270899 270899 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.53%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold829 SAMTools SNP 270911 270911 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C3.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold829 SAMTools SNP 270988 270988 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C2.7e-13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C214:74 scaffold829 SAMTools SNP 275650 275650 16.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold829 SAMTools SNP 276445 276445 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C98:40 scaffold829 SAMTools SNP 276465 276465 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold829 SAMTools SNP 282503 282503 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold829 SAMTools SNP 283826 283826 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 284382 284382 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold829 SAMTools SNP 284418 284418 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C8%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.47%2C1.2e-31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold829 SAMTools SNP 284463 284463 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C31%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.28%2C7.7e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold829 SAMTools SNP 286356 286356 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C34%2C2%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 286411 286411 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold829 SAMTools SNP 287359 287359 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C0.033%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C195:46 scaffold829 SAMTools SNP 287383 287383 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.11%2C0.017%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C191:39 scaffold829 SAMTools SNP 287517 287517 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0124%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold829 SAMTools SNP 287530 287530 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold829 SAMTools SNP 287766 287766 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold829 SAMTools SNP 296129 296129 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold829 SAMTools SNP 299594 299594 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0124%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C2%3BMQ%3D46%3BFQ%3D7.8%3BPV4%3D0.048%2C1%2C0.059%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C160:34 scaffold829 SAMTools SNP 299748 299748 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold829 SAMTools SNP 301676 301676 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 301717 301717 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold829 SAMTools SNP 301768 301768 213 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.37%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C175:99 scaffold829 SAMTools SNP 302677 302677 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold829 SAMTools SNP 302729 302729 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C7%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.3%2C3.3e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold829 SAMTools SNP 302810 302810 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold829 SAMTools SNP 303076 303076 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.51%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold829 SAMTools SNP 303085 303085 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0022%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold829 SAMTools SNP 303100 303100 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold829 SAMTools SNP 303125 303125 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.53%2C0.052%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C98:99 scaffold829 SAMTools SNP 307302 307302 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C0.087%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold829 SAMTools SNP 307506 307506 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C12%2C0:21 scaffold829 SAMTools SNP 307509 307509 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D5.47%3BPV4%3D1%2C0.1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C82:30 scaffold829 SAMTools SNP 311479 311479 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold829 SAMTools SNP 311485 311485 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold829 SAMTools SNP 312627 312627 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.4%2C0.0042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C160:63 scaffold829 SAMTools SNP 371913 371913 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold829 SAMTools SNP 443756 443756 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold829 SAMTools SNP 443802 443802 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 443825 443825 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold829 SAMTools SNP 445813 445813 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold829 SAMTools SNP 446695 446695 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C118:40 scaffold829 SAMTools SNP 447748 447748 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold829 SAMTools SNP 447820 447820 126 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold829 SAMTools SNP 449917 449917 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold829 SAMTools SNP 451380 451380 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold829 SAMTools SNP 451453 451453 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 451459 451459 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 554062 554062 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 555858 555858 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold829 SAMTools SNP 583577 583577 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold829 SAMTools SNP 587381 587381 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold829 SAMTools SNP 587913 587913 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold829 SAMTools SNP 588480 588480 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 588531 588531 5.46 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C130:34 scaffold829 SAMTools SNP 588533 588533 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold829 SAMTools SNP 589027 589027 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 589870 589870 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold829 SAMTools SNP 614207 614207 51.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold829 SAMTools SNP 632274 632274 113 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C33%2C0:63 scaffold829 SAMTools SNP 632950 632950 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold829 SAMTools SNP 632952 632952 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 633891 633891 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold829 SAMTools SNP 633918 633918 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold829 SAMTools SNP 633990 633990 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 634330 634330 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 636241 636241 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.026%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 636520 636520 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 636538 636538 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold829 SAMTools SNP 636962 636962 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 636985 636985 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold829 SAMTools SNP 637578 637578 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C5%2C2%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.59%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C218:99 scaffold829 SAMTools SNP 638834 638834 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold829 SAMTools SNP 638864 638864 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.43%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold829 SAMTools SNP 638912 638912 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold829 SAMTools SNP 639197 639197 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold829 SAMTools SNP 639260 639260 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold829 SAMTools SNP 639491 639491 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.53%2C1%2C1%2C0.00076;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold829 SAMTools SNP 640039 640039 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C6%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.2%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 640065 640065 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.039%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold829 SAMTools SNP 640080 640080 87 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.11%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold829 SAMTools SNP 640086 640086 120 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold829 SAMTools SNP 640101 640101 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold829 SAMTools SNP 640303 640303 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold829 SAMTools SNP 640337 640337 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold829 SAMTools SNP 640389 640389 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold829 SAMTools SNP 640438 640438 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold829 SAMTools SNP 640452 640452 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.00042%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold829 SAMTools SNP 640711 640711 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold829 SAMTools SNP 641440 641440 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold829 SAMTools SNP 675680 675680 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold829 SAMTools SNP 676825 676825 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C33%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C24:27 scaffold829 SAMTools SNP 676913 676913 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.53%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold831 SAMTools SNP 2962 2962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold831 SAMTools SNP 5686 5686 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C128:99 scaffold831 SAMTools SNP 5713 5713 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold831 SAMTools SNP 27227 27227 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold831 SAMTools SNP 27619 27619 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold831 SAMTools SNP 28041 28041 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold831 SAMTools SNP 28044 28044 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold831 SAMTools SNP 28755 28755 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold831 SAMTools SNP 29865 29865 144 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold831 SAMTools SNP 29889 29889 84 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold831 SAMTools SNP 30189 30189 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold831 SAMTools SNP 30197 30197 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold831 SAMTools SNP 30466 30466 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold831 SAMTools SNP 30790 30790 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold831 SAMTools SNP 30943 30943 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold831 SAMTools SNP 30952 30952 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0005%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold831 SAMTools SNP 31229 31229 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C5.1e-15%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C227:78 scaffold831 SAMTools SNP 31327 31327 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.12%2C3.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold831 SAMTools SNP 31609 31609 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C15%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.037%2C1.2e-33%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold831 SAMTools SNP 64436 64436 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold831 SAMTools SNP 67873 67873 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold831 SAMTools SNP 80588 80588 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C1%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.53%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold831 SAMTools SNP 86630 86630 48.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold831 SAMTools SNP 92437 92437 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C214:67 scaffold831 SAMTools SNP 97554 97554 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold831 SAMTools SNP 105299 105299 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold831 SAMTools SNP 105771 105771 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold831 SAMTools SNP 117208 117208 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold833 SAMTools SNP 83233 83233 10.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D25%3BFQ%3D-27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C0:4 scaffold833 SAMTools SNP 85504 85504 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold833 SAMTools SNP 86030 86030 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D411%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C150%2C32%2C184%3BMQ%3D47%3BFQ%3D89%3BPV4%3D0.15%2C0%2C0.24%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold833 SAMTools SNP 110441 110441 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C1%3BMQ%3D48%3BFQ%3D19.1%3BPV4%3D1%2C0.37%2C0.032%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold833 SAMTools SNP 121137 121137 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold833 SAMTools SNP 127766 127766 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C217:40 scaffold833 SAMTools SNP 132514 132514 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold833 SAMTools SNP 132517 132517 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold833 SAMTools SNP 133051 133051 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold833 SAMTools SNP 134789 134789 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold833 SAMTools SNP 135512 135512 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold833 SAMTools SNP 135553 135553 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold833 SAMTools SNP 135867 135867 204 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C8%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold833 SAMTools SNP 136867 136867 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold833 SAMTools SNP 137137 137137 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold833 SAMTools SNP 164399 164399 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold833 SAMTools SNP 189818 189818 11.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C12%2C0:18 scaffold833 SAMTools SNP 193387 193387 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C0.053%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold833 SAMTools SNP 193873 193873 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.00068%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold833 SAMTools SNP 208347 208347 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold833 SAMTools SNP 219141 219141 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold833 SAMTools SNP 221781 221781 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold833 SAMTools SNP 222568 222568 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold833 SAMTools SNP 223592 223592 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.61%2C0.47%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold833 SAMTools SNP 223614 223614 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.62%2C1%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold833 SAMTools SNP 223630 223630 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C96:99 scaffold833 SAMTools SNP 223723 223723 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold833 SAMTools SNP 224152 224152 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.015%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C173:99 scaffold833 SAMTools SNP 224227 224227 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold833 SAMTools SNP 224266 224266 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold833 SAMTools SNP 224646 224646 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold833 SAMTools SNP 225151 225151 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold833 SAMTools SNP 225181 225181 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C16%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold833 SAMTools SNP 225202 225202 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0205%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C232:37 scaffold833 SAMTools SNP 225238 225238 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold833 SAMTools SNP 225696 225696 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold833 SAMTools SNP 228122 228122 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold833 SAMTools SNP 228857 228857 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0180%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0065%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold833 SAMTools SNP 228882 228882 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C0.37%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C107:99 scaffold833 SAMTools SNP 228909 228909 73 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C77:80 scaffold833 SAMTools SNP 240367 240367 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold833 SAMTools SNP 243714 243714 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C0%2C4%3BMQ%3D48%3BFQ%3D97%3BPV4%3D0.002%2C1%2C1%2C6.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C187:99 scaffold833 SAMTools SNP 261363 261363 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold833 SAMTools SNP 266163 266163 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold833 SAMTools SNP 266223 266223 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold833 SAMTools SNP 286221 286221 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5781%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C145%2C1673%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold833 SAMTools SNP 288207 288207 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3278%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C1667%2C52%2C1468%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold833 SAMTools SNP 288231 288231 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2072%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C129%2C1941%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold833 SAMTools SNP 289253 289253 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C14%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C4.9e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold833 SAMTools SNP 290753 290753 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C29%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold833 SAMTools SNP 290828 290828 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold833 SAMTools SNP 290837 290837 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold833 SAMTools SNP 290873 290873 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold833 SAMTools SNP 292972 292972 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold833 SAMTools SNP 292990 292990 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold833 SAMTools SNP 293011 293011 34.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold833 SAMTools SNP 296211 296211 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold833 SAMTools SNP 296657 296657 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold833 SAMTools SNP 298471 298471 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold833 SAMTools SNP 298510 298510 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold833 SAMTools SNP 298534 298534 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0101%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.15%2C0.0079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C222:36 scaffold833 SAMTools SNP 300888 300888 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C9%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.51%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold833 SAMTools SNP 301151 301151 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold833 SAMTools SNP 301175 301175 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold833 SAMTools SNP 301253 301253 40.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold833 SAMTools SNP 301292 301292 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold833 SAMTools SNP 301574 301574 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.5e-09%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold833 SAMTools SNP 301670 301670 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C19%2C15%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.056%2C6.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold833 SAMTools SNP 301721 301721 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C30%2C0%2C18%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.0066%2C6.2e-46%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold833 SAMTools SNP 304212 304212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold833 SAMTools SNP 304220 304220 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C4%2C19%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold833 SAMTools SNP 305046 305046 35.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold833 SAMTools SNP 308331 308331 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C23%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold833 SAMTools SNP 308869 308869 98.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C21%2C0:39 scaffold833 SAMTools SNP 367822 367822 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C25%2C0%2C5%3BMQ%3D48%3BFQ%3D50%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold833 SAMTools SNP 367831 367831 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C21%3BMQ%3D48%3BFQ%3D217%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold833 SAMTools SNP 370944 370944 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold833 SAMTools SNP 370977 370977 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold834 SAMTools SNP 23830 23830 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold834 SAMTools SNP 23956 23956 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold834 SAMTools SNP 23991 23991 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold834 SAMTools SNP 25043 25043 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D48%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C78%2C0:99 scaffold834 SAMTools SNP 27654 27654 27.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold834 SAMTools SNP 28290 28290 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold834 SAMTools SNP 28296 28296 34.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold834 SAMTools SNP 29183 29183 28.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold834 SAMTools SNP 31640 31640 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold834 SAMTools SNP 40319 40319 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C1%2C34%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.48%2C0.41%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold834 SAMTools SNP 40887 40887 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C20%2C18%2C2%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.08%2C0.0058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold834 SAMTools SNP 40910 40910 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C9%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.012%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold834 SAMTools SNP 40962 40962 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D167%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C88%2C22%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.11%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold834 SAMTools SNP 41888 41888 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.07%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold834 SAMTools SNP 41903 41903 45.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold834 SAMTools SNP 57158 57158 88.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold834 SAMTools SNP 59149 59149 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5032%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-8.63%3BPV4%3D1%2C1.5e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C19:22 scaffold834 SAMTools SNP 74225 74225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold834 SAMTools SNP 74678 74678 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C28%2C1%3BMQ%3D47%3BFQ%3D-77%3BPV4%3D1%2C0.25%2C0.37%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C50%2C0:97 scaffold834 SAMTools SNP 74735 74735 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C21:24 scaffold835 SAMTools SNP 2291 2291 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 2335 2335 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 2688 2688 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold835 SAMTools SNP 2899 2899 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C36%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 3299 3299 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 4974 4974 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 5159 5159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold835 SAMTools SNP 5968 5968 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.071%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 6030 6030 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C21%2C36%2C15%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.15%2C2.8e-28%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold835 SAMTools SNP 6539 6539 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C3%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00051%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 6582 6582 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D544%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C44%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold835 SAMTools SNP 8651 8651 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.62%2C0.4%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold835 SAMTools SNP 11145 11145 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.29%2C0.13%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C212:99 scaffold835 SAMTools SNP 11540 11540 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 11542 11542 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 11587 11587 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold835 SAMTools SNP 12037 12037 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold835 SAMTools SNP 12040 12040 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold835 SAMTools SNP 12225 12225 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C14%2C24%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 12354 12354 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C7%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold835 SAMTools SNP 12590 12590 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C25%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold835 SAMTools SNP 13018 13018 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold835 SAMTools SNP 24662 24662 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold835 SAMTools SNP 25717 25717 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold835 SAMTools SNP 26109 26109 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold835 SAMTools SNP 26187 26187 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C145:99 scaffold835 SAMTools SNP 26947 26947 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.13%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold835 SAMTools SNP 26959 26959 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold835 SAMTools SNP 27962 27962 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C62:42 scaffold835 SAMTools SNP 28022 28022 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.14%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C202:71 scaffold835 SAMTools SNP 30582 30582 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold835 SAMTools SNP 33155 33155 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C17%3BMQ%3D49%3BFQ%3D108%3BPV4%3D1%2C1%2C0.29%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C135:99 scaffold835 SAMTools SNP 33188 33188 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold835 SAMTools SNP 44001 44001 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 44017 44017 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 44241 44241 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 44277 44277 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 44671 44671 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold835 SAMTools SNP 59863 59863 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 64965 64965 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C27%2C0:51 scaffold835 SAMTools SNP 66220 66220 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.22%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold835 SAMTools SNP 66325 66325 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 66884 66884 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.13%2C0.0008%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold835 SAMTools SNP 74011 74011 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C18%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 116034 116034 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.58%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold835 SAMTools SNP 116148 116148 161 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C10%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C169%2C0:99 scaffold835 SAMTools SNP 118778 118778 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C24%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 118802 118802 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C3%2C47%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 125362 125362 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C110%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 125401 125401 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C116%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 127000 127000 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C48%2C16%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 127054 127054 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 127060 127060 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C13%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold835 SAMTools SNP 127084 127084 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C45%2C0:87 scaffold835 SAMTools SNP 127159 127159 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C28%2C16%2C18%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.5%2C4e-62%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold835 SAMTools SNP 127201 127201 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold835 SAMTools SNP 127306 127306 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C23%2C51%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1.6e-25%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 130455 130455 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C98%2C23%2C1%3BMQ%3D49%3BFQ%3D8.65%3BPV4%3D2.7e-18%2C5.3e-31%2C1%2C1.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold835 SAMTools SNP 130806 130806 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D52%2C3%2C35%2C0%3BMQ%3D49%3BFQ%3D4.77%3BPV4%3D0.28%2C1.6e-102%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold835 SAMTools SNP 133868 133868 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D35%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C42%2C0:63 scaffold835 SAMTools SNP 136125 136125 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold835 SAMTools SNP 136418 136418 39.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold835 SAMTools SNP 138231 138231 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C19%2C18%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0018%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold835 SAMTools SNP 142110 142110 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C17%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 143287 143287 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.026%2C0.079%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C183:99 scaffold835 SAMTools SNP 144036 144036 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C150:99 scaffold835 SAMTools SNP 144051 144051 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C219:36 scaffold835 SAMTools SNP 144825 144825 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.19%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 144864 144864 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C223:99 scaffold835 SAMTools SNP 144906 144906 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.41%2C0.2%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold835 SAMTools SNP 144915 144915 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.67%2C0.47%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold835 SAMTools SNP 145348 145348 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 147628 147628 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold835 SAMTools SNP 147635 147635 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold835 SAMTools SNP 148149 148149 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold835 SAMTools SNP 148176 148176 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C2%2C6%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.013%2C0.0029%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold835 SAMTools SNP 148329 148329 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C28%3BMQ%3D48%3BFQ%3D223%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold835 SAMTools SNP 148336 148336 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C15%3BMQ%3D49%3BFQ%3D134%3BPV4%3D1%2C1%2C0.00074%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold835 SAMTools SNP 150603 150603 10.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold835 SAMTools SNP 150908 150908 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0046%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold835 SAMTools SNP 151612 151612 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold835 SAMTools SNP 152168 152168 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D47%3BPV4%3D1%2C0.27%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C74:77 scaffold835 SAMTools SNP 152180 152180 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C157:72 scaffold835 SAMTools SNP 152366 152366 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D42%3BPV4%3D1%2C0.46%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C182:72 scaffold835 SAMTools SNP 152395 152395 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C3%2C0%3BMQ%3D46%3BFQ%3D39.6%3BPV4%3D0.1%2C2.6e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C77:70 scaffold835 SAMTools SNP 152464 152464 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D46%3BFQ%3D44%3BPV4%3D1%2C0.29%2C0.29%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C71:74 scaffold835 SAMTools SNP 153153 153153 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold835 SAMTools SNP 153657 153657 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold835 SAMTools SNP 153664 153664 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold835 SAMTools SNP 154262 154262 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold835 SAMTools SNP 154274 154274 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold835 SAMTools SNP 154289 154289 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold835 SAMTools SNP 154310 154310 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold835 SAMTools SNP 154839 154839 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 154875 154875 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold835 SAMTools SNP 156309 156309 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold835 SAMTools SNP 156804 156804 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold835 SAMTools SNP 156933 156933 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold835 SAMTools SNP 156966 156966 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold835 SAMTools SNP 157684 157684 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.0082%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C41:44 scaffold835 SAMTools SNP 157723 157723 55.8 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold835 SAMTools SNP 157746 157746 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold835 SAMTools SNP 160990 160990 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C234:99 scaffold835 SAMTools SNP 162148 162148 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold835 SAMTools SNP 162199 162199 80 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C4%2C9%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold835 SAMTools SNP 162820 162820 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C42%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 163221 163221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold835 SAMTools SNP 163239 163239 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold835 SAMTools SNP 163419 163419 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold835 SAMTools SNP 166223 166223 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold835 SAMTools SNP 166232 166232 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.051%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold835 SAMTools SNP 166241 166241 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold835 SAMTools SNP 166257 166257 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold835 SAMTools SNP 166561 166561 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C10%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold835 SAMTools SNP 167042 167042 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold835 SAMTools SNP 167104 167104 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold835 SAMTools SNP 167105 167105 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.005%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C119:99 scaffold835 SAMTools SNP 167625 167625 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C0.18%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C74:77 scaffold835 SAMTools SNP 167628 167628 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C199:72 scaffold835 SAMTools SNP 167643 167643 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold835 SAMTools SNP 167658 167658 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold835 SAMTools SNP 167724 167724 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C21%2C0:39 scaffold835 SAMTools SNP 167741 167741 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C181:31 scaffold835 SAMTools SNP 168377 168377 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C131%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 168560 168560 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C38%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold835 SAMTools SNP 168650 168650 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C9%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold835 SAMTools SNP 168665 168665 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C17%2C6%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.00084%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C141:99 scaffold835 SAMTools SNP 168683 168683 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.00084%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold835 SAMTools SNP 169340 169340 122 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold835 SAMTools SNP 169358 169358 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C232:49 scaffold835 SAMTools SNP 169626 169626 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C17%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C43:46 scaffold835 SAMTools SNP 170164 170164 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold835 SAMTools SNP 170703 170703 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold835 SAMTools SNP 170775 170775 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 170811 170811 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold835 SAMTools SNP 171528 171528 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 171618 171618 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold835 SAMTools SNP 171633 171633 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold835 SAMTools SNP 172147 172147 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold835 SAMTools SNP 172644 172644 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold835 SAMTools SNP 172663 172663 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 173160 173160 60 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold835 SAMTools SNP 173238 173238 221 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C21%2C0:39 scaffold835 SAMTools SNP 174364 174364 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.33%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C251:99 scaffold835 SAMTools SNP 174385 174385 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold835 SAMTools SNP 174695 174695 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold835 SAMTools SNP 174704 174704 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C9%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.019%2C0.27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold835 SAMTools SNP 175023 175023 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold835 SAMTools SNP 175071 175071 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C6%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.061%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold835 SAMTools SNP 175499 175499 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C9%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold835 SAMTools SNP 175526 175526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C48%2C7%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C93:96 scaffold835 SAMTools SNP 175628 175628 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C48%2C3%2C5%3BMQ%3D47%3BFQ%3D11.3%3BPV4%3D0.69%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold835 SAMTools SNP 175661 175661 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C28%2C52%2C7%3BMQ%3D41%3BFQ%3D225%3BPV4%3D0.017%2C1%2C0.052%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 176244 176244 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C112%2C35%3BMQ%3D32%3BFQ%3D-282%3BPV4%3D0.2%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 176422 176422 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold835 SAMTools SNP 176444 176444 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold835 SAMTools SNP 184545 184545 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold835 SAMTools SNP 184912 184912 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold835 SAMTools SNP 195518 195518 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C181:99 scaffold835 SAMTools SNP 196733 196733 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.52%2C0.0025%2C0.083%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C249:57 scaffold835 SAMTools SNP 200572 200572 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D8.37%3BPV4%3D0.2%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C35:38 scaffold835 SAMTools SNP 200747 200747 117 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C45%2C0:87 scaffold835 SAMTools SNP 200766 200766 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C3%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C72%2C0:99 scaffold835 SAMTools SNP 200849 200849 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C3.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 201235 201235 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C139%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold835 SAMTools SNP 201349 201349 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C30%3BMQ%3D50%3BFQ%3D-93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold835 SAMTools SNP 201936 201936 35 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold835 SAMTools SNP 201963 201963 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C87:90 scaffold835 SAMTools SNP 201966 201966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold835 SAMTools SNP 202074 202074 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 202077 202077 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold835 SAMTools SNP 208105 208105 7.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold835 SAMTools SNP 213678 213678 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 214712 214712 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold835 SAMTools SNP 237460 237460 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.4%2C0.077%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C112:52 scaffold835 SAMTools SNP 242176 242176 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C2.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C134:53 scaffold835 SAMTools SNP 263987 263987 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.0004%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C29:32 scaffold835 SAMTools SNP 264407 264407 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold835 SAMTools SNP 264438 264438 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold835 SAMTools SNP 268052 268052 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold835 SAMTools SNP 268252 268252 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.044%2C3.1e-05%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold835 SAMTools SNP 287418 287418 18.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold835 SAMTools SNP 287508 287508 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.024%2C2.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold835 SAMTools SNP 288846 288846 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold835 SAMTools SNP 298322 298322 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.25%2C1%2C5.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold835 SAMTools SNP 299981 299981 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.044%2C1.4e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold835 SAMTools SNP 302640 302640 48.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold835 SAMTools SNP 305193 305193 15.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C15%2C0:24 scaffold835 SAMTools SNP 305227 305227 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold835 SAMTools SNP 305243 305243 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 305624 305624 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C1%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold835 SAMTools SNP 305961 305961 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold835 SAMTools SNP 311071 311071 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold835 SAMTools SNP 311424 311424 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold835 SAMTools SNP 311451 311451 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 311475 311475 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold835 SAMTools SNP 311534 311534 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 311589 311589 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold835 SAMTools SNP 312012 312012 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold835 SAMTools SNP 312042 312042 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold835 SAMTools SNP 312051 312051 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold835 SAMTools SNP 312629 312629 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold835 SAMTools SNP 312667 312667 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold835 SAMTools SNP 313042 313042 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold835 SAMTools SNP 313074 313074 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold835 SAMTools SNP 315766 315766 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 316197 316197 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold835 SAMTools SNP 316251 316251 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold835 SAMTools SNP 316611 316611 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.012%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C235:99 scaffold835 SAMTools SNP 316653 316653 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold835 SAMTools SNP 316686 316686 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 321023 321023 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 321044 321044 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold835 SAMTools SNP 321048 321048 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold835 SAMTools SNP 321050 321050 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C151:82 scaffold835 SAMTools SNP 321052 321052 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C250:60 scaffold835 SAMTools SNP 321761 321761 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C201:99 scaffold835 SAMTools SNP 321801 321801 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C0.12%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C167:99 scaffold835 SAMTools SNP 321825 321825 69 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.083%2C0.16%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C176:99 scaffold835 SAMTools SNP 324538 324538 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold835 SAMTools SNP 324556 324556 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.27%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold835 SAMTools SNP 325197 325197 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 325202 325202 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold835 SAMTools SNP 325226 325226 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C0.49%2C1%2C9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold835 SAMTools SNP 325241 325241 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C0.025%2C1%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold835 SAMTools SNP 336376 336376 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold835 SAMTools SNP 336845 336845 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold835 SAMTools SNP 336881 336881 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold835 SAMTools SNP 338101 338101 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold835 SAMTools SNP 338122 338122 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C101:99 scaffold835 SAMTools SNP 338140 338140 108 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold835 SAMTools SNP 339092 339092 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C235:69 scaffold835 SAMTools SNP 339128 339128 77.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C12%2C0:21 scaffold835 SAMTools SNP 340732 340732 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold835 SAMTools SNP 340748 340748 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold835 SAMTools SNP 340786 340786 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0118%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C234:99 scaffold835 SAMTools SNP 341420 341420 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.53%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold835 SAMTools SNP 341429 341429 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.32%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold835 SAMTools SNP 341480 341480 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.27%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C96:99 scaffold835 SAMTools SNP 342320 342320 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C228:99 scaffold835 SAMTools SNP 342341 342341 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C223:99 scaffold835 SAMTools SNP 344538 344538 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold835 SAMTools SNP 344563 344563 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.00095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold835 SAMTools SNP 344566 344566 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold835 SAMTools SNP 346877 346877 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold835 SAMTools SNP 373737 373737 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold835 SAMTools SNP 420288 420288 8.65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold837 SAMTools SNP 19153 19153 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 19219 19219 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 19248 19248 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 23817 23817 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C9%2C0:16 scaffold837 SAMTools SNP 30824 30824 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold837 SAMTools SNP 31323 31323 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C0.22%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C154:99 scaffold837 SAMTools SNP 31328 31328 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold837 SAMTools SNP 31461 31461 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold837 SAMTools SNP 33482 33482 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 34047 34047 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold837 SAMTools SNP 34068 34068 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold837 SAMTools SNP 34637 34637 47 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold837 SAMTools SNP 36828 36828 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.11%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C199:51 scaffold837 SAMTools SNP 36896 36896 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold837 SAMTools SNP 66302 66302 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 67403 67403 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D10.8%3BPV4%3D1%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C38:41 scaffold837 SAMTools SNP 67751 67751 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D32.8%3BPV4%3D1%2C5.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C66:63 scaffold837 SAMTools SNP 67966 67966 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C38:41 scaffold837 SAMTools SNP 74732 74732 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C4%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.71%2C2.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold837 SAMTools SNP 77663 77663 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C4%2C26%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C3.1e-46%2C1%2C4.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold837 SAMTools SNP 78055 78055 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 78075 78075 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold837 SAMTools SNP 78346 78346 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 78938 78938 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold837 SAMTools SNP 86392 86392 68.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C18%2C0:33 scaffold837 SAMTools SNP 86473 86473 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C12%2C0:21 scaffold837 SAMTools SNP 89045 89045 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold837 SAMTools SNP 89054 89054 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold837 SAMTools SNP 89086 89086 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold837 SAMTools SNP 90715 90715 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D41%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold837 SAMTools SNP 92252 92252 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.35%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold837 SAMTools SNP 92631 92631 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.22%2C0.23%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold837 SAMTools SNP 93541 93541 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold837 SAMTools SNP 93958 93958 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold837 SAMTools SNP 93985 93985 90.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C18%2C0:33 scaffold837 SAMTools SNP 94009 94009 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold837 SAMTools SNP 95053 95053 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold837 SAMTools SNP 95059 95059 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold837 SAMTools SNP 95204 95204 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold837 SAMTools SNP 95312 95312 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D1%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C11:14 scaffold837 SAMTools SNP 95978 95978 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold837 SAMTools SNP 96020 96020 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 97010 97010 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C19%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.002%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 97997 97997 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C23%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C7.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C243:77 scaffold837 SAMTools SNP 106821 106821 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold837 SAMTools SNP 107027 107027 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold837 SAMTools SNP 108520 108520 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold837 SAMTools SNP 109362 109362 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold837 SAMTools SNP 110154 110154 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C9%2C0:16 scaffold837 SAMTools SNP 110258 110258 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C41:44 scaffold837 SAMTools SNP 111992 111992 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 114647 114647 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 114741 114741 71 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C22%2C5%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.24%2C0.0025%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold837 SAMTools SNP 115721 115721 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C22%2C14%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.0011%2C1.4e-05%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 115959 115959 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold837 SAMTools SNP 115964 115964 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.46%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold837 SAMTools SNP 116194 116194 97 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.0025%2C1.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C213:99 scaffold837 SAMTools SNP 116196 116196 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C0.11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold837 SAMTools SNP 116289 116289 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold837 SAMTools SNP 117440 117440 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold837 SAMTools SNP 117473 117473 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C14%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 117780 117780 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0028%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold837 SAMTools SNP 118000 118000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold837 SAMTools SNP 118556 118556 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 118599 118599 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold837 SAMTools SNP 118727 118727 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold837 SAMTools SNP 118912 118912 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C17%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 119763 119763 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold837 SAMTools SNP 123585 123585 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C8%2C1%3BMQ%3D34%3BFQ%3D60%3BPV4%3D0.64%2C1%2C0.21%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold837 SAMTools SNP 123600 123600 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C8%3BMQ%3D29%3BFQ%3D35%3BPV4%3D0.27%2C0.033%2C0.013%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C252:65 scaffold837 SAMTools SNP 127200 127200 92.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C7%2C9%2C0%3BMQ%3D23%3BFQ%3D-29%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C2%2C0:5 scaffold837 SAMTools SNP 128229 128229 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D9%2C19%2C1%2C17%3BMQ%3D29%3BFQ%3D-31%3BPV4%3D0.064%2C0.18%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C4%2C0:7 scaffold837 SAMTools SNP 128876 128876 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C12%2C1%3BMQ%3D47%3BFQ%3D170%3BPV4%3D0.62%2C1%2C0.073%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold837 SAMTools SNP 128966 128966 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 128984 128984 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 129350 129350 116 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C4%3BMQ%3D43%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C177:99 scaffold837 SAMTools SNP 129365 129365 118 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C2%3BMQ%3D43%3BFQ%3D120%3BPV4%3D0.57%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C156:99 scaffold837 SAMTools SNP 133955 133955 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold837 SAMTools SNP 133991 133991 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.41%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C214:99 scaffold837 SAMTools SNP 134038 134038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C5%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold837 SAMTools SNP 136316 136316 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold837 SAMTools SNP 136345 136345 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 136396 136396 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold837 SAMTools SNP 137367 137367 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C6%2C34%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.57%2C0.053%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold837 SAMTools SNP 137552 137552 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C17%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.024%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold837 SAMTools SNP 137770 137770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C27%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 137960 137960 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold837 SAMTools SNP 140615 140615 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold837 SAMTools SNP 145909 145909 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold837 SAMTools SNP 146676 146676 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold837 SAMTools SNP 146913 146913 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C21%2C0:39 scaffold837 SAMTools SNP 146930 146930 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C130:30 scaffold837 SAMTools SNP 147898 147898 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold837 SAMTools SNP 147956 147956 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold837 SAMTools SNP 149088 149088 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 149266 149266 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 149267 149267 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold837 SAMTools SNP 149326 149326 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold837 SAMTools SNP 149341 149341 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold837 SAMTools SNP 150067 150067 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold837 SAMTools SNP 150099 150099 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold837 SAMTools SNP 150338 150338 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold837 SAMTools SNP 150502 150502 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold837 SAMTools SNP 150508 150508 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold837 SAMTools SNP 150512 150512 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold837 SAMTools SNP 154004 154004 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C143:31 scaffold837 SAMTools SNP 154232 154232 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.029%2C0.00022%2C1%2C1.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold837 SAMTools SNP 154272 154272 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold837 SAMTools SNP 155125 155125 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C121:99 scaffold837 SAMTools SNP 155143 155143 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C0.23%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C169:99 scaffold837 SAMTools SNP 155354 155354 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold837 SAMTools SNP 155860 155860 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold837 SAMTools SNP 156416 156416 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold837 SAMTools SNP 157922 157922 95.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C127%2C235%2C0%2C222:39 scaffold837 SAMTools SNP 157988 157988 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold837 SAMTools SNP 158145 158145 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.47%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold837 SAMTools SNP 158791 158791 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.061%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold837 SAMTools SNP 159484 159484 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold837 SAMTools SNP 160345 160345 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold837 SAMTools SNP 162585 162585 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold838 SAMTools SNP 4683 4683 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold838 SAMTools SNP 18888 18888 18.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C102:51 scaffold838 SAMTools SNP 25641 25641 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold838 SAMTools SNP 38191 38191 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C251:99 scaffold838 SAMTools SNP 46055 46055 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold839 SAMTools SNP 17680 17680 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold839 SAMTools SNP 17718 17718 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold839 SAMTools SNP 17749 17749 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold839 SAMTools SNP 17763 17763 24 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C41:44 scaffold839 SAMTools SNP 17900 17900 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.11%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold839 SAMTools SNP 18587 18587 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C13%3BMQ%3D48%3BFQ%3D25%3BPV4%3D0.0018%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C52:55 scaffold839 SAMTools SNP 18623 18623 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C0%3BMQ%3D48%3BFQ%3D118%3BPV4%3D0.086%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold839 SAMTools SNP 22217 22217 118 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C1%3BMQ%3D47%3BFQ%3D121%3BPV4%3D0.57%2C0.17%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C192:99 scaffold839 SAMTools SNP 22220 22220 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold839 SAMTools SNP 30364 30364 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C9%2C2%3BMQ%3D36%3BFQ%3D112%3BPV4%3D0.042%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C139:99 scaffold839 SAMTools SNP 30852 30852 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C22%2C1%3BMQ%3D39%3BFQ%3D183%3BPV4%3D0.00016%2C1%2C0.12%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold839 SAMTools SNP 31411 31411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C13%3BMQ%3D40%3BFQ%3D102%3BPV4%3D0.02%2C1%2C0.024%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C129:99 scaffold839 SAMTools SNP 43472 43472 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold839 SAMTools SNP 43930 43930 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C41:44 scaffold839 SAMTools SNP 44793 44793 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold839 SAMTools SNP 47037 47037 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold839 SAMTools SNP 51032 51032 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C9%2C0:16 scaffold839 SAMTools SNP 58126 58126 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C13%2C27%3BMQ%3D35%3BFQ%3D-107%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C80%2C0:99 scaffold839 SAMTools SNP 58150 58150 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C1%2C39%3BMQ%3D35%3BFQ%3D-90%3BPV4%3D0.094%2C0.48%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C63%2C0:99 scaffold839 SAMTools SNP 61767 61767 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C24%2C0:45 scaffold839 SAMTools SNP 66036 66036 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold839 SAMTools SNP 66756 66756 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C58%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C208%2C0:99 scaffold839 SAMTools SNP 66858 66858 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.1e-23%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold839 SAMTools SNP 67369 67369 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold839 SAMTools SNP 70908 70908 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold839 SAMTools SNP 78129 78129 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.1%2C0.0097%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C77:55 scaffold847 SAMTools SNP 61320 61320 78 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C17%2C64%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.057%2C7e-139%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold847 SAMTools SNP 71472 71472 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold847 SAMTools SNP 75692 75692 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 149007 149007 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C200:66 scaffold847 SAMTools SNP 151069 151069 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.58%2C1%2C1%2C1.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold847 SAMTools SNP 152902 152902 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 207379 207379 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold847 SAMTools SNP 207385 207385 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold847 SAMTools SNP 213948 213948 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold847 SAMTools SNP 213976 213976 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold847 SAMTools SNP 215372 215372 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.36%2C2.6e-15%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C231:99 scaffold847 SAMTools SNP 215621 215621 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C18%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold847 SAMTools SNP 215777 215777 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold847 SAMTools SNP 215925 215925 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold847 SAMTools SNP 216524 216524 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C39%2C0:75 scaffold847 SAMTools SNP 216545 216545 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.29%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C148:87 scaffold847 SAMTools SNP 216650 216650 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C15%2C0:27 scaffold847 SAMTools SNP 217115 217115 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold847 SAMTools SNP 217417 217417 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C155:99 scaffold847 SAMTools SNP 217477 217477 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C0.0099;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold847 SAMTools SNP 217495 217495 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.59%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold847 SAMTools SNP 218207 218207 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.3%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold847 SAMTools SNP 246952 246952 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold847 SAMTools SNP 246966 246966 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C110%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.042%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 246993 246993 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C61%2C36%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C9.8e-12%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 247494 247494 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-6.97%3BPV4%3D1%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C21:24 scaffold847 SAMTools SNP 247743 247743 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 247978 247978 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C11%2C4%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold847 SAMTools SNP 248012 248012 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C14%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold847 SAMTools SNP 248298 248298 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C43%2C9%2C7%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.013%2C9e-15%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold847 SAMTools SNP 248414 248414 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C9.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 248719 248719 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C1%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold847 SAMTools SNP 248741 248741 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold847 SAMTools SNP 248915 248915 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold847 SAMTools SNP 282710 282710 147 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold847 SAMTools SNP 289164 289164 53.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold847 SAMTools SNP 290354 290354 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold847 SAMTools SNP 290375 290375 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold847 SAMTools SNP 290411 290411 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C32%2C7%3BMQ%3D49%3BFQ%3D35%3BPV4%3D0.57%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C62:65 scaffold847 SAMTools SNP 291934 291934 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold847 SAMTools SNP 294015 294015 188 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C18%2C0:33 scaffold847 SAMTools SNP 294065 294065 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold847 SAMTools SNP 294093 294093 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold847 SAMTools SNP 294679 294679 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C13%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold847 SAMTools SNP 295436 295436 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 295532 295532 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C68:42 scaffold847 SAMTools SNP 295534 295534 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold847 SAMTools SNP 295580 295580 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C1%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold847 SAMTools SNP 295919 295919 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C59%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C202%2C0:99 scaffold847 SAMTools SNP 295952 295952 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold847 SAMTools SNP 296024 296024 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C5%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold847 SAMTools SNP 296574 296574 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C43%2C13%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.00057%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 296673 296673 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C32%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold847 SAMTools SNP 296884 296884 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C15%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold847 SAMTools SNP 297634 297634 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D1%2C0.29%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold847 SAMTools SNP 298232 298232 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 298751 298751 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.62%2C0.43%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold847 SAMTools SNP 298768 298768 158 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold847 SAMTools SNP 300187 300187 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold847 SAMTools SNP 300198 300198 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C2%2C6%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.57%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold847 SAMTools SNP 300455 300455 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold847 SAMTools SNP 300760 300760 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 300937 300937 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C11%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold847 SAMTools SNP 301289 301289 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 301341 301341 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C44%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold847 SAMTools SNP 301511 301511 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C66%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 301681 301681 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold847 SAMTools SNP 302826 302826 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C83%2C2%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 303163 303163 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C54%2C1%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.29%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 303213 303213 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C128%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold847 SAMTools SNP 307866 307866 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold847 SAMTools SNP 308040 308040 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0039%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold847 SAMTools SNP 321772 321772 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold847 SAMTools SNP 326512 326512 20 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1.7e-06%2C1%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C216:53 scaffold847 SAMTools SNP 329667 329667 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold847 SAMTools SNP 340346 340346 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 342630 342630 3.55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold847 SAMTools SNP 350295 350295 7.59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold847 SAMTools SNP 352369 352369 38.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold847 SAMTools SNP 354120 354120 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold847 SAMTools SNP 358279 358279 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C95%2C5%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 358330 358330 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.45%2C0.024%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold847 SAMTools SNP 358339 358339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold847 SAMTools SNP 359870 359870 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C4%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.16%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 363677 363677 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold847 SAMTools SNP 364122 364122 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold847 SAMTools SNP 364125 364125 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 364681 364681 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold847 SAMTools SNP 364720 364720 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C42%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold847 SAMTools SNP 370250 370250 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 370500 370500 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.025%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold847 SAMTools SNP 370509 370509 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold847 SAMTools SNP 372425 372425 183 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold847 SAMTools SNP 372496 372496 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold847 SAMTools SNP 372504 372504 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.095%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold847 SAMTools SNP 373039 373039 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold847 SAMTools SNP 373093 373093 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.066%2C1.6e-07%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold847 SAMTools SNP 375806 375806 103 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.08%2C0.03%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C175:99 scaffold847 SAMTools SNP 376973 376973 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold847 SAMTools SNP 377057 377057 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 377735 377735 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold847 SAMTools SNP 377801 377801 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold847 SAMTools SNP 377804 377804 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold847 SAMTools SNP 378421 378421 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold847 SAMTools SNP 378860 378860 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold847 SAMTools SNP 378977 378977 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C15%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold847 SAMTools SNP 379587 379587 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C10%2C7%2C12%3BMQ%3D47%3BFQ%3D41%3BPV4%3D0.74%2C5.5e-23%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold847 SAMTools SNP 386632 386632 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C23%2C2%3BMQ%3D48%3BFQ%3D146%3BPV4%3D0.44%2C1.6e-07%2C0.0048%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold847 SAMTools SNP 386734 386734 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C30%3BMQ%3D47%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold847 SAMTools SNP 386874 386874 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C46%3BMQ%3D47%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold847 SAMTools SNP 387122 387122 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 395990 395990 34.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold847 SAMTools SNP 396154 396154 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold847 SAMTools SNP 396172 396172 22 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C88:55 scaffold847 SAMTools SNP 402843 402843 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C16%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 402882 402882 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C15%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 403457 403457 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C40%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold847 SAMTools SNP 404110 404110 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C12%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.38%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 404356 404356 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C5%2C12%2C2%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.22%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold847 SAMTools SNP 404431 404431 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 404478 404478 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C254:99 scaffold847 SAMTools SNP 404725 404725 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold847 SAMTools SNP 404786 404786 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C17%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.53%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold847 SAMTools SNP 405159 405159 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C2%2C12%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.22%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold847 SAMTools SNP 405192 405192 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold847 SAMTools SNP 405225 405225 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold847 SAMTools SNP 405246 405246 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C5%2C17%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold847 SAMTools SNP 405482 405482 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold847 SAMTools SNP 406590 406590 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C8%2C45%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold847 SAMTools SNP 408082 408082 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 410196 410196 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C33%2C10%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D3.2e-05%2C2.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold847 SAMTools SNP 410852 410852 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C38%2C5%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold847 SAMTools SNP 476410 476410 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C44:40 scaffold847 SAMTools SNP 507215 507215 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 507476 507476 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 507695 507695 56.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold847 SAMTools SNP 552675 552675 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold847 SAMTools SNP 558212 558212 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold847 SAMTools SNP 558292 558292 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C96:99 scaffold847 SAMTools SNP 558557 558557 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.17%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold847 SAMTools SNP 558566 558566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold847 SAMTools SNP 559227 559227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold847 SAMTools SNP 559245 559245 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold847 SAMTools SNP 561065 561065 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold847 SAMTools SNP 589006 589006 40.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold847 SAMTools SNP 616107 616107 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 669100 669100 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold847 SAMTools SNP 671211 671211 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0153%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold847 SAMTools SNP 724179 724179 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold847 SAMTools SNP 725330 725330 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.029%2C0.25%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C134:99 scaffold847 SAMTools SNP 725362 725362 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold847 SAMTools SNP 726034 726034 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold847 SAMTools SNP 726053 726053 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold847 SAMTools SNP 728845 728845 36.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold847 SAMTools SNP 729090 729090 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold847 SAMTools SNP 729126 729126 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold847 SAMTools SNP 730498 730498 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold847 SAMTools SNP 730531 730531 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold85 SAMTools SNP 17845 17845 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C72%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 18083 18083 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C72%2C4%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 18085 18085 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C38%2C12%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 18156 18156 60 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.51%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold85 SAMTools SNP 18412 18412 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C66%2C0:99 scaffold85 SAMTools SNP 19109 19109 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold85 SAMTools SNP 19121 19121 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.37%2C0.23%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold85 SAMTools SNP 19849 19849 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C218:99 scaffold85 SAMTools SNP 20442 20442 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold85 SAMTools SNP 21054 21054 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold85 SAMTools SNP 21084 21084 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C0.15%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold85 SAMTools SNP 21090 21090 47.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold85 SAMTools SNP 21093 21093 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold85 SAMTools SNP 21195 21195 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.00051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C195:95 scaffold85 SAMTools SNP 21231 21231 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C24%2C0:45 scaffold85 SAMTools SNP 21839 21839 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.52%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C177:99 scaffold85 SAMTools SNP 21863 21863 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold85 SAMTools SNP 22172 22172 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 22187 22187 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 22198 22198 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C66%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold85 SAMTools SNP 22603 22603 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 23058 23058 102 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold85 SAMTools SNP 26679 26679 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C233:99 scaffold85 SAMTools SNP 26691 26691 163 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C10%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold85 SAMTools SNP 28018 28018 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold85 SAMTools SNP 29916 29916 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 34050 34050 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 35174 35174 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold85 SAMTools SNP 35284 35284 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 35410 35410 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 35968 35968 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold85 SAMTools SNP 35989 35989 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold85 SAMTools SNP 36308 36308 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold85 SAMTools SNP 38900 38900 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold85 SAMTools SNP 43601 43601 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C8%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C164:99 scaffold85 SAMTools SNP 43672 43672 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0084%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold85 SAMTools SNP 43674 43674 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0109%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold85 SAMTools SNP 44387 44387 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 44421 44421 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold85 SAMTools SNP 44437 44437 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 48063 48063 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.023%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold85 SAMTools SNP 50242 50242 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold85 SAMTools SNP 50334 50334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold85 SAMTools SNP 50748 50748 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C0.34%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold85 SAMTools SNP 50760 50760 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C32%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.28%2C0.33%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold85 SAMTools SNP 50775 50775 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C5%2C21%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.15%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold85 SAMTools SNP 50778 50778 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C33%2C5%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.15%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold85 SAMTools SNP 51362 51362 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C20%2C1%2C5%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.17%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold85 SAMTools SNP 52742 52742 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold85 SAMTools SNP 52769 52769 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold85 SAMTools SNP 52957 52957 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C38%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.11%2C3.5e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold85 SAMTools SNP 52967 52967 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold85 SAMTools SNP 53030 53030 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C33%2C1%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 53051 53051 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C31%2C2%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.00039%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 53078 53078 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 53517 53517 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 53586 53586 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold85 SAMTools SNP 53613 53613 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 54780 54780 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.29%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold85 SAMTools SNP 54787 54787 37 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.29%2C9.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold85 SAMTools SNP 54843 54843 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.6%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold85 SAMTools SNP 54879 54879 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold85 SAMTools SNP 56218 56218 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold85 SAMTools SNP 58958 58958 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 61466 61466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold85 SAMTools SNP 62669 62669 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold85 SAMTools SNP 64097 64097 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold85 SAMTools SNP 64890 64890 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold85 SAMTools SNP 65596 65596 182 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold85 SAMTools SNP 84680 84680 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.58%2C0.23%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold85 SAMTools SNP 85276 85276 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.00044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 85299 85299 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 85933 85933 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 89043 89043 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.27%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold85 SAMTools SNP 90103 90103 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold85 SAMTools SNP 90124 90124 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold85 SAMTools SNP 90190 90190 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.21%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold85 SAMTools SNP 90241 90241 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C0.46%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 90244 90244 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 90514 90514 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 90607 90607 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold85 SAMTools SNP 90954 90954 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold85 SAMTools SNP 91381 91381 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold85 SAMTools SNP 91441 91441 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold85 SAMTools SNP 93459 93459 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 97373 97373 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold85 SAMTools SNP 97409 97409 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold85 SAMTools SNP 98161 98161 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold85 SAMTools SNP 101899 101899 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold85 SAMTools SNP 102227 102227 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C15%2C0:27 scaffold85 SAMTools SNP 102345 102345 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0052%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.13%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold85 SAMTools SNP 102391 102391 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold85 SAMTools SNP 102678 102678 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold85 SAMTools SNP 102741 102741 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C15%2C3%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.24%2C1.5e-06%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C226:99 scaffold85 SAMTools SNP 103849 103849 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.32%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold85 SAMTools SNP 103864 103864 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C0%2C15%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.5%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold85 SAMTools SNP 106736 106736 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C14%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C235:99 scaffold85 SAMTools SNP 106774 106774 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold85 SAMTools SNP 112435 112435 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold85 SAMTools SNP 112669 112669 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.52%2C1%2C1%2C2.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold85 SAMTools SNP 113094 113094 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C8%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 113142 113142 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C0%2C62%2C66%3BMQ%3D50%3BFQ%3D217%3BPV4%3D7.5e-18%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold85 SAMTools SNP 113861 113861 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold85 SAMTools SNP 115441 115441 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C115%2C7%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 115700 115700 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C17%2C35%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 115715 115715 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C19%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 118406 118406 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C42%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 120459 120459 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold85 SAMTools SNP 120552 120552 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold85 SAMTools SNP 121405 121405 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold85 SAMTools SNP 121423 121423 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold85 SAMTools SNP 121825 121825 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C167%2C1%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 122503 122503 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.017%2C1%2C4.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 122866 122866 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C170%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 122908 122908 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C192%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 123445 123445 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D363%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D156%2C18%2C21%2C9%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.0072%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold85 SAMTools SNP 123463 123463 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C72%2C18%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 124423 124423 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C33%2C16%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.31%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 125636 125636 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C48%2C0%2C19%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.00012%2C0.38%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold85 SAMTools SNP 125664 125664 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold85 SAMTools SNP 125714 125714 7.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D0.083%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C0:4 scaffold85 SAMTools SNP 141979 141979 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0002%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D110%2C25%2C20%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C1%2C1%2C5.5e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold85 SAMTools SNP 142451 142451 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C78%2C19%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D2.4e-12%2C0.0049%2C1%2C2.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold85 SAMTools SNP 142514 142514 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C107%2C0%2C20%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C202:69 scaffold85 SAMTools SNP 142537 142537 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C1%2C20%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold85 SAMTools SNP 143139 143139 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold85 SAMTools SNP 143146 143146 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 143156 143156 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 143164 143164 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 143740 143740 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C23%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold85 SAMTools SNP 143920 143920 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C156%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 143934 143934 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C58%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold85 SAMTools SNP 144683 144683 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C22%2C0%2C15%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.00016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold85 SAMTools SNP 144736 144736 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.33%2C1%2C1%2C1.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold85 SAMTools SNP 144771 144771 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C24%2C21%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.016%2C0.088%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C108:99 scaffold85 SAMTools SNP 144787 144787 73 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C21%2C8%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold85 SAMTools SNP 145214 145214 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold85 SAMTools SNP 145241 145241 155 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C5%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.086%2C0.14%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold85 SAMTools SNP 145250 145250 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 145521 145521 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold85 SAMTools SNP 145550 145550 206 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.026%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C197:99 scaffold85 SAMTools SNP 145562 145562 196 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold85 SAMTools SNP 145578 145578 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 145583 145583 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 145929 145929 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold85 SAMTools SNP 147918 147918 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C19%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 147942 147942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C16%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.65%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold85 SAMTools SNP 147972 147972 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C19%2C29%2C14%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.52%2C8.7e-75%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold85 SAMTools SNP 148028 148028 126 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C32%2C32%2C18%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.85%2C1.6e-52%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold85 SAMTools SNP 148450 148450 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C44%2C1%2C7%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.67%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold85 SAMTools SNP 149318 149318 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold85 SAMTools SNP 185058 185058 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C14%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.048%2C2.2e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold85 SAMTools SNP 185253 185253 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C32%2C50%2C0%3BMQ%3D50%3BFQ%3D175%3BPV4%3D9.1e-07%2C1%2C1%2C0.00084;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold85 SAMTools SNP 188054 188054 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C30%2C111%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.8e-05%2C9.6e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 188438 188438 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C95%2C21%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0074%2C0.004%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 188444 188444 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C82%2C17%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0014%2C0.0054%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 188574 188574 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C2%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.16%2C0.21%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 188607 188607 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D158%2C22%2C187%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C0.19%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 189581 189581 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C0.033%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C121:98 scaffold85 SAMTools SNP 189682 189682 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C2.1e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C69:41 scaffold85 SAMTools SNP 189706 189706 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D30.4%3BPV4%3D1%2C7.1e-11%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C66:60 scaffold85 SAMTools SNP 191580 191580 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 191820 191820 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C145%2C4%2C154%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00021%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 191833 191833 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D476%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C164%2C53%2C173%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0089%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 193750 193750 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C85:41 scaffold85 SAMTools SNP 196583 196583 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C68%2C15%2C44%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.55%2C1%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 196666 196666 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold85 SAMTools SNP 198863 198863 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C15%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 198968 198968 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C26%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold85 SAMTools SNP 199744 199744 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D349%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C110%2C32%2C91%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.0038%2C0.23%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 200073 200073 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C51%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold85 SAMTools SNP 200079 200079 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C3%2C43%2C40%3BMQ%3D49%3BFQ%3D-96%3BPV4%3D0.67%2C1%2C0.36%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold85 SAMTools SNP 200951 200951 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 200989 200989 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 201315 201315 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold85 SAMTools SNP 202910 202910 21.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold85 SAMTools SNP 204842 204842 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C32%2C32%2C56%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 207544 207544 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 209860 209860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D288%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C80%2C69%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.014%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 217568 217568 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C21%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold85 SAMTools SNP 217587 217587 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C13%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 217602 217602 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C11%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 222130 222130 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C10%2C38%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 225731 225731 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C6%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold85 SAMTools SNP 226275 226275 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold85 SAMTools SNP 227353 227353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold85 SAMTools SNP 227623 227623 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C2%3BMQ%3D39%3BFQ%3D32%3BPV4%3D0.52%2C0.11%2C0.33%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold85 SAMTools SNP 227665 227665 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D34%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C33%2C0:63 scaffold85 SAMTools SNP 245507 245507 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 248187 248187 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C7%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.27%2C3.2e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold85 SAMTools SNP 248396 248396 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C13%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C78%2C0:99 scaffold85 SAMTools SNP 248898 248898 62 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C24%2C0:45 scaffold85 SAMTools SNP 249385 249385 56.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C15%2C0:27 scaffold85 SAMTools SNP 249474 249474 20.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold85 SAMTools SNP 250154 250154 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C17%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold85 SAMTools SNP 255491 255491 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 255518 255518 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C58%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold85 SAMTools SNP 288076 288076 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 291762 291762 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold85 SAMTools SNP 292818 292818 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold85 SAMTools SNP 292821 292821 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold85 SAMTools SNP 293013 293013 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold85 SAMTools SNP 293033 293033 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold85 SAMTools SNP 293166 293166 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C27%2C7%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.23%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold85 SAMTools SNP 298627 298627 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold85 SAMTools SNP 357039 357039 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C4.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C154:43 scaffold85 SAMTools SNP 361814 361814 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 361830 361830 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold85 SAMTools SNP 397094 397094 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 405693 405693 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold85 SAMTools SNP 412433 412433 3.55 . . REF=N;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold85 SAMTools SNP 422326 422326 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold85 SAMTools SNP 461450 461450 19.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold85 SAMTools SNP 461623 461623 15.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold85 SAMTools SNP 465612 465612 18.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold85 SAMTools SNP 469472 469472 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C196%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 472270 472270 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C130%2C24%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00097%2C1%2C1%2C8.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 472279 472279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C130%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 472306 472306 123 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C90%2C0:99 scaffold85 SAMTools SNP 472378 472378 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C24%2C0:45 scaffold85 SAMTools SNP 473561 473561 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 473585 473585 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C60%2C3%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 473600 473600 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C63%2C2%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C5.3e-15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 473636 473636 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C55%2C0%2C38%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.51%2C3.9e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold85 SAMTools SNP 473696 473696 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 473699 473699 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 478271 478271 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.24%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C227:55 scaffold85 SAMTools SNP 478307 478307 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C178%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 478956 478956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C301%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 478995 478995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C2%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold85 SAMTools SNP 479121 479121 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C135%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 479797 479797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D311%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C193%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 479875 479875 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D620%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D296%2C23%2C254%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 480390 480390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D594%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C241%2C353%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 480417 480417 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D684%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C301%2C16%2C293%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.3e-06%2C9.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 480712 480712 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D528%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C204%2C30%2C239%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 480808 480808 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C46%2C89%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00034%2C8.8e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 481181 481181 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C103%2C0%2C108%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-15%2C1%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 481202 481202 114 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C81%2C0%2C36%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.00016%2C1%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold85 SAMTools SNP 481577 481577 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold85 SAMTools SNP 481628 481628 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold85 SAMTools SNP 481670 481670 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 481685 481685 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C7%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.6e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 483283 483283 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C110%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 483290 483290 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 483485 483485 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold85 SAMTools SNP 483987 483987 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C29%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold85 SAMTools SNP 484339 484339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold85 SAMTools SNP 486493 486493 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 486544 486544 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C277%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold85 SAMTools SNP 489399 489399 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C150%2C1%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.4e-11%2C1%2C1%2C1.1e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 489474 489474 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C23%2C58%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.00027%2C0.043%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold85 SAMTools SNP 490165 490165 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C41%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold85 SAMTools SNP 490183 490183 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold85 SAMTools SNP 490225 490225 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C37%2C32%3BMQ%3D50%3BFQ%3D-207%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C0:99 scaffold85 SAMTools SNP 490683 490683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C33%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold85 SAMTools SNP 490701 490701 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0050%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold85 SAMTools SNP 491372 491372 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold85 SAMTools SNP 491390 491390 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold85 SAMTools SNP 536484 536484 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.12%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold85 SAMTools SNP 538105 538105 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold85 SAMTools SNP 538107 538107 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold85 SAMTools SNP 538209 538209 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 540299 540299 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 542567 542567 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold85 SAMTools SNP 542585 542585 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C1%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold85 SAMTools SNP 543667 543667 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold85 SAMTools SNP 544606 544606 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C247:66 scaffold85 SAMTools SNP 545941 545941 97 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:253%2C133%2C124%2C133%2C0%2C124:16 scaffold85 SAMTools SNP 545981 545981 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold85 SAMTools SNP 546450 546450 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold85 SAMTools SNP 546933 546933 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C237:99 scaffold85 SAMTools SNP 547284 547284 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold85 SAMTools SNP 548619 548619 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold85 SAMTools SNP 551132 551132 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold85 SAMTools SNP 551383 551383 159 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C1%2C8%3BMQ%3D49%3BFQ%3D162%3BPV4%3D1%2C1%2C0.13%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C235:99 scaffold85 SAMTools SNP 551410 551410 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold85 SAMTools SNP 551732 551732 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold85 SAMTools SNP 552198 552198 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold85 SAMTools SNP 552201 552201 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 552231 552231 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C24%2C0:45 scaffold85 SAMTools SNP 553387 553387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C26%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.015%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 553417 553417 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 553441 553441 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C21%2C2%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 554874 554874 163 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C30%2C15%2C188%2C0%2C185:27 scaffold85 SAMTools SNP 554877 554877 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold85 SAMTools SNP 554891 554891 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.29%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C234:99 scaffold85 SAMTools SNP 556521 556521 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 556802 556802 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold85 SAMTools SNP 556820 556820 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold85 SAMTools SNP 557401 557401 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold85 SAMTools SNP 557481 557481 145 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.044%2C0.3%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold85 SAMTools SNP 557482 557482 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.044%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold85 SAMTools SNP 558336 558336 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.53%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold85 SAMTools SNP 558384 558384 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold85 SAMTools SNP 558712 558712 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold85 SAMTools SNP 559050 559050 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.084%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C150:46 scaffold85 SAMTools SNP 559067 559067 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C9%2C5%3BMQ%3D50%3BFQ%3D82%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold85 SAMTools SNP 559560 559560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold85 SAMTools SNP 560851 560851 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C3e-06%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold85 SAMTools SNP 562592 562592 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C132:99 scaffold85 SAMTools SNP 563115 563115 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 563117 563117 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 563124 563124 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 563196 563196 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold85 SAMTools SNP 563671 563671 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 563701 563701 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold85 SAMTools SNP 563965 563965 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.48%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold85 SAMTools SNP 564685 564685 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold85 SAMTools SNP 565188 565188 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C6%2C7%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C168:99 scaffold85 SAMTools SNP 565281 565281 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.39%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold85 SAMTools SNP 565544 565544 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.11%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold85 SAMTools SNP 565601 565601 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 565869 565869 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C15%2C1%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.0013%2C0.056%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold85 SAMTools SNP 565893 565893 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold85 SAMTools SNP 566288 566288 226 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5718%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C20%3BMQ%3D50%3BFQ%3D-21%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C6:9 scaffold85 SAMTools SNP 567944 567944 116 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C229:99 scaffold85 SAMTools SNP 567967 567967 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C225:99 scaffold85 SAMTools SNP 568472 568472 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C54%2C2%2C17%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.065%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold85 SAMTools SNP 568483 568483 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.51%2C0.14%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C254:59 scaffold85 SAMTools SNP 568793 568793 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 569571 569571 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C75%2C0:99 scaffold85 SAMTools SNP 570061 570061 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold85 SAMTools SNP 571094 571094 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.083%2C0.0018%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C223:47 scaffold85 SAMTools SNP 571717 571717 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold85 SAMTools SNP 572242 572242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold85 SAMTools SNP 572263 572263 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold85 SAMTools SNP 572599 572599 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold85 SAMTools SNP 572611 572611 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 572632 572632 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold85 SAMTools SNP 573651 573651 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold85 SAMTools SNP 573654 573654 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold85 SAMTools SNP 573663 573663 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold85 SAMTools SNP 573726 573726 136 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C12%2C0:21 scaffold85 SAMTools SNP 574120 574120 37.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C18%2C0:33 scaffold85 SAMTools SNP 577154 577154 142 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C177:99 scaffold85 SAMTools SNP 577403 577403 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold850 SAMTools SNP 22643 22643 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold850 SAMTools SNP 22721 22721 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold850 SAMTools SNP 22760 22760 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold850 SAMTools SNP 34428 34428 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold850 SAMTools SNP 35387 35387 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 37289 37289 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C13%2C30%3BMQ%3D50%3BFQ%3D222%3BPV4%3D4.3e-12%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold850 SAMTools SNP 37335 37335 214 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C30%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D5e-14%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold850 SAMTools SNP 37481 37481 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C15%2C16%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.041%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 37511 37511 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C11%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0002%2C0.31%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 37819 37819 35 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C23%2C4%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.0051%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold850 SAMTools SNP 37830 37830 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C3%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.015%2C0.43%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold850 SAMTools SNP 37835 37835 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 37919 37919 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C6%2C6%2C5%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.023%2C0.2%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold850 SAMTools SNP 37921 37921 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C24%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C6.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 40102 40102 165 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C46%2C22%2C0%3BMQ%3D50%3BFQ%3D168%3BPV4%3D2e-12%2C1%2C1%2C1.8e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold850 SAMTools SNP 40104 40104 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C45%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold850 SAMTools SNP 47277 47277 50.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold850 SAMTools SNP 47953 47953 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C15%2C0:27 scaffold850 SAMTools SNP 48127 48127 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C23%2C1%2C5%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold850 SAMTools SNP 51509 51509 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C2%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.046%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 51855 51855 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold850 SAMTools SNP 51894 51894 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold850 SAMTools SNP 54862 54862 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C1%3BMQ%3D42%3BFQ%3D109%3BPV4%3D1%2C1%2C0.13%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C252:99 scaffold850 SAMTools SNP 54909 54909 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C7%2C4%3BMQ%3D43%3BFQ%3D166%3BPV4%3D1%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold850 SAMTools SNP 57190 57190 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C4%3BMQ%3D47%3BFQ%3D50%3BPV4%3D1%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C211:80 scaffold850 SAMTools SNP 57205 57205 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D48%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C191:63 scaffold850 SAMTools SNP 60445 60445 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 62414 62414 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 62457 62457 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold850 SAMTools SNP 62482 62482 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold850 SAMTools SNP 63767 63767 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold850 SAMTools SNP 64716 64716 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold850 SAMTools SNP 64755 64755 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold850 SAMTools SNP 65622 65622 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold850 SAMTools SNP 65633 65633 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold850 SAMTools SNP 68849 68849 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 69962 69962 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 70145 70145 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold850 SAMTools SNP 71247 71247 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0069%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold850 SAMTools SNP 71275 71275 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0091%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold850 SAMTools SNP 71374 71374 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.11%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold850 SAMTools SNP 71386 71386 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold850 SAMTools SNP 71633 71633 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold850 SAMTools SNP 71659 71659 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.13%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C155:78 scaffold850 SAMTools SNP 71674 71674 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.067%2C0.11%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C190:99 scaffold850 SAMTools SNP 71782 71782 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold850 SAMTools SNP 71869 71869 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.37%2C1.3e-13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C120:99 scaffold850 SAMTools SNP 72138 72138 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold850 SAMTools SNP 96296 96296 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold850 SAMTools SNP 112439 112439 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold850 SAMTools SNP 113141 113141 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 113168 113168 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 118249 118249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 119545 119545 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 119579 119579 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold850 SAMTools SNP 123730 123730 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold850 SAMTools SNP 124601 124601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 124751 124751 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C129:36 scaffold850 SAMTools SNP 124797 124797 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold850 SAMTools SNP 125135 125135 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C169:31 scaffold850 SAMTools SNP 126871 126871 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold850 SAMTools SNP 131756 131756 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold850 SAMTools SNP 137382 137382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C21%3BMQ%3D39%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold850 SAMTools SNP 138430 138430 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D49%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold850 SAMTools SNP 138490 138490 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold850 SAMTools SNP 138496 138496 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold850 SAMTools SNP 139924 139924 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C11%3BMQ%3D49%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold850 SAMTools SNP 144854 144854 69 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold850 SAMTools SNP 149885 149885 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.29%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold850 SAMTools SNP 150681 150681 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 153752 153752 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold850 SAMTools SNP 156055 156055 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C19%2C10%2C3%3BMQ%3D49%3BFQ%3D185%3BPV4%3D0.056%2C0.00033%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold850 SAMTools SNP 156058 156058 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C22%3BMQ%3D49%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold850 SAMTools SNP 157013 157013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C40%2C11%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 157064 157064 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C80%2C1%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 157782 157782 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold850 SAMTools SNP 157788 157788 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold850 SAMTools SNP 157827 157827 176 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C102:99 scaffold850 SAMTools SNP 158482 158482 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C7%2C2%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.3%2C1%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold850 SAMTools SNP 158527 158527 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C12%2C16%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.01%2C6e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold850 SAMTools SNP 158545 158545 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C34%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 160683 160683 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C59%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold850 SAMTools SNP 160707 160707 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.23%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold850 SAMTools SNP 160838 160838 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold850 SAMTools SNP 160845 160845 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold850 SAMTools SNP 161063 161063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C1%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold850 SAMTools SNP 161084 161084 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C1%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold850 SAMTools SNP 161869 161869 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C14%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold850 SAMTools SNP 168037 168037 45.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C15%2C0:27 scaffold850 SAMTools SNP 169814 169814 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold850 SAMTools SNP 173766 173766 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold850 SAMTools SNP 188103 188103 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold850 SAMTools SNP 192269 192269 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 193653 193653 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold850 SAMTools SNP 193945 193945 67.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C15%2C0:27 scaffold850 SAMTools SNP 216521 216521 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.12%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold850 SAMTools SNP 218077 218077 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold850 SAMTools SNP 218437 218437 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C246:99 scaffold850 SAMTools SNP 218507 218507 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.081%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold850 SAMTools SNP 219139 219139 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold850 SAMTools SNP 219159 219159 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold850 SAMTools SNP 237486 237486 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold850 SAMTools SNP 253417 253417 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C24%2C0:45 scaffold850 SAMTools SNP 255310 255310 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold850 SAMTools SNP 255339 255339 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold850 SAMTools SNP 264584 264584 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold852 SAMTools SNP 11292 11292 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold852 SAMTools SNP 11358 11358 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold852 SAMTools SNP 21217 21217 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold852 SAMTools SNP 48015 48015 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold852 SAMTools SNP 48121 48121 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold852 SAMTools SNP 48838 48838 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold852 SAMTools SNP 48896 48896 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold852 SAMTools SNP 48905 48905 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold852 SAMTools SNP 49520 49520 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold852 SAMTools SNP 49875 49875 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold852 SAMTools SNP 50343 50343 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold852 SAMTools SNP 50371 50371 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D37%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C88:67 scaffold852 SAMTools SNP 51664 51664 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold852 SAMTools SNP 51695 51695 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold852 SAMTools SNP 51713 51713 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold852 SAMTools SNP 52047 52047 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold852 SAMTools SNP 52555 52555 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold852 SAMTools SNP 52770 52770 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold852 SAMTools SNP 52833 52833 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold852 SAMTools SNP 53801 53801 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold852 SAMTools SNP 54095 54095 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold852 SAMTools SNP 54111 54111 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold852 SAMTools SNP 67608 67608 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold852 SAMTools SNP 68032 68032 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C41:44 scaffold852 SAMTools SNP 71207 71207 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0.0013%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold852 SAMTools SNP 81446 81446 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C55%2C0%2C18%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.0099%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold852 SAMTools SNP 127926 127926 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold852 SAMTools SNP 199669 199669 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D297%2C77%2C86%2C20%3BMQ%3D48%3BFQ%3D162%3BPV4%3D0.78%2C0.099%2C3e-05%2C2.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold852 SAMTools SNP 199711 199711 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C39%2C17%2C14%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.078%2C1%2C0.017%2C8.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold852 SAMTools SNP 199720 199720 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C38%2C0%2C23%3BMQ%3D48%3BFQ%3D180%3BPV4%3D0.014%2C0.012%2C1%2C2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold852 SAMTools SNP 200258 200258 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C101%2C0%2C297%3BMQ%3D48%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C65:68 scaffold852 SAMTools SNP 200271 200271 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D389%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C297%2C0%2C92%3BMQ%3D48%3BFQ%3D39%3BPV4%3D1%2C1%2C2.8e-05%2C2.1e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold852 SAMTools SNP 200419 200419 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C61%3BMQ%3D44%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold852 SAMTools SNP 226298 226298 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold852 SAMTools SNP 226299 226299 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold852 SAMTools SNP 244322 244322 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold852 SAMTools SNP 244349 244349 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold852 SAMTools SNP 248981 248981 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C48%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold852 SAMTools SNP 249462 249462 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C28%2C0%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.57%2C0.19%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold852 SAMTools SNP 249873 249873 105 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C4.9e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold852 SAMTools SNP 250647 250647 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C33%2C23%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C2.1e-09%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold852 SAMTools SNP 255778 255778 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold852 SAMTools SNP 255799 255799 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold852 SAMTools SNP 258245 258245 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold852 SAMTools SNP 260065 260065 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold852 SAMTools SNP 271302 271302 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.5e-10%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C132:39 scaffold852 SAMTools SNP 274596 274596 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold852 SAMTools SNP 275406 275406 52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C0.32%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold852 SAMTools SNP 275427 275427 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold852 SAMTools SNP 279973 279973 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold852 SAMTools SNP 280135 280135 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold852 SAMTools SNP 284215 284215 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C2%2C4%3BMQ%3D47%3BFQ%3D113%3BPV4%3D0.64%2C1%2C0.017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold852 SAMTools SNP 288226 288226 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold852 SAMTools SNP 289173 289173 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C0%2C8%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.0064%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold852 SAMTools SNP 289182 289182 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.018%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold852 SAMTools SNP 289343 289343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold852 SAMTools SNP 289836 289836 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C13%2C13%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.79%2C7.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold852 SAMTools SNP 293206 293206 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold852 SAMTools SNP 295756 295756 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold852 SAMTools SNP 297613 297613 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold852 SAMTools SNP 297628 297628 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.12%2C0.43%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C253:99 scaffold852 SAMTools SNP 298342 298342 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold852 SAMTools SNP 303184 303184 58.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C18%2C0:33 scaffold852 SAMTools SNP 303274 303274 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold852 SAMTools SNP 303675 303675 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C14%2C8%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.14%2C8.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold852 SAMTools SNP 303699 303699 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C11%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold852 SAMTools SNP 305418 305418 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C12%3BMQ%3D50%3BFQ%3D51.9%3BPV4%3D0.35%2C3.3e-14%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C95:82 scaffold853 SAMTools SNP 1997 1997 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 2006 2006 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 3848 3848 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold853 SAMTools SNP 3870 3870 160 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C227:99 scaffold853 SAMTools SNP 4761 4761 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C18:21 scaffold853 SAMTools SNP 5026 5026 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold853 SAMTools SNP 19109 19109 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.067%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C117:77 scaffold853 SAMTools SNP 21030 21030 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold853 SAMTools SNP 21041 21041 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold853 SAMTools SNP 21057 21057 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold853 SAMTools SNP 21102 21102 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 42218 42218 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold853 SAMTools SNP 44833 44833 34.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold853 SAMTools SNP 58944 58944 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C140:28 scaffold853 SAMTools SNP 62331 62331 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C12%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold853 SAMTools SNP 64498 64498 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold853 SAMTools SNP 64536 64536 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold853 SAMTools SNP 64894 64894 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.06%2C0.073%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold853 SAMTools SNP 66026 66026 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold853 SAMTools SNP 66050 66050 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.26%2C0.34%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold853 SAMTools SNP 67226 67226 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold853 SAMTools SNP 69198 69198 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C17%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.068%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 74884 74884 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C17%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold853 SAMTools SNP 75431 75431 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.003%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold853 SAMTools SNP 75604 75604 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C27%2C2%2C31%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.42%2C4.1e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold853 SAMTools SNP 81130 81130 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold853 SAMTools SNP 81146 81146 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold853 SAMTools SNP 89751 89751 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.0027%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold853 SAMTools SNP 90109 90109 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-63%3BPV4%3D1%2C1%2C1%2C1.4e-15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold853 SAMTools SNP 93985 93985 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C88%2C22%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D6.3e-18%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold853 SAMTools SNP 94540 94540 29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C7.2e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C207:62 scaffold853 SAMTools SNP 94702 94702 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C37%2C0%2C19%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C251:99 scaffold853 SAMTools SNP 94714 94714 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C37%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.34%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C216:99 scaffold853 SAMTools SNP 97322 97322 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold853 SAMTools SNP 111879 111879 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 124523 124523 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 130905 130905 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold853 SAMTools SNP 130938 130938 155 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C213:99 scaffold853 SAMTools SNP 131216 131216 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold853 SAMTools SNP 131663 131663 125 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C10%3BMQ%3D46%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C84%2C0:99 scaffold853 SAMTools SNP 131970 131970 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C6%2C34%2C36%3BMQ%3D43%3BFQ%3D-140%3BPV4%3D1%2C7.9e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C113%2C0:99 scaffold853 SAMTools SNP 133734 133734 23 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C2%2C7%3BMQ%3D41%3BFQ%3D26%3BPV4%3D0.00092%2C0.026%2C4.4e-05%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C245:56 scaffold853 SAMTools SNP 133755 133755 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C2%2C0%2C8%3BMQ%3D44%3BFQ%3D7.8%3BPV4%3D1.9e-06%2C0.0049%2C4.2e-06%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C248:34 scaffold853 SAMTools SNP 134901 134901 73 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C28%2C7%2C1%3BMQ%3D49%3BFQ%3D76%3BPV4%3D0.0053%2C0.44%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold853 SAMTools SNP 134921 134921 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C6%2C1%3BMQ%3D49%3BFQ%3D73%3BPV4%3D0.0011%2C1%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold853 SAMTools SNP 137582 137582 181 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C45%2C0:87 scaffold853 SAMTools SNP 137785 137785 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C8%2C13%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C5.5e-33%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold853 SAMTools SNP 138658 138658 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C57%2C0:99 scaffold853 SAMTools SNP 146021 146021 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold853 SAMTools SNP 146033 146033 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.43%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold853 SAMTools SNP 146036 146036 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C71:74 scaffold853 SAMTools SNP 146554 146554 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold853 SAMTools SNP 146572 146572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C0.25%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold853 SAMTools SNP 147691 147691 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold853 SAMTools SNP 150358 150358 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold853 SAMTools SNP 150403 150403 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold853 SAMTools SNP 150947 150947 164 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.058%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C244:99 scaffold853 SAMTools SNP 151764 151764 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C193:99 scaffold853 SAMTools SNP 151995 151995 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 152460 152460 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold853 SAMTools SNP 152490 152490 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.14%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold853 SAMTools SNP 152780 152780 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 152816 152816 107 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold853 SAMTools SNP 152867 152867 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C36%2C0:69 scaffold853 SAMTools SNP 153128 153128 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold853 SAMTools SNP 153521 153521 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.3%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C147:99 scaffold853 SAMTools SNP 153530 153530 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C148:99 scaffold853 SAMTools SNP 153533 153533 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C157:81 scaffold853 SAMTools SNP 153593 153593 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 153841 153841 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C12%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold853 SAMTools SNP 153877 153877 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.24%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold853 SAMTools SNP 153886 153886 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.12%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold853 SAMTools SNP 154094 154094 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C20%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.28%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold853 SAMTools SNP 154095 154095 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C2%2C6%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.28%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold853 SAMTools SNP 154109 154109 111 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold853 SAMTools SNP 154163 154163 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C33%2C0:63 scaffold853 SAMTools SNP 154211 154211 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0072%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold853 SAMTools SNP 154379 154379 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.32%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C29:32 scaffold853 SAMTools SNP 154414 154414 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold853 SAMTools SNP 154638 154638 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.39%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold853 SAMTools SNP 154901 154901 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold853 SAMTools SNP 154949 154949 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C73:76 scaffold853 SAMTools SNP 154988 154988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold853 SAMTools SNP 155422 155422 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C18%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold853 SAMTools SNP 155604 155604 75 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.15%2C0.02%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold853 SAMTools SNP 156026 156026 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold853 SAMTools SNP 156075 156075 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold853 SAMTools SNP 156079 156079 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold853 SAMTools SNP 156471 156471 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold853 SAMTools SNP 156822 156822 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 156854 156854 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold853 SAMTools SNP 164086 164086 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C15%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold853 SAMTools SNP 165270 165270 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold853 SAMTools SNP 165279 165279 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold853 SAMTools SNP 165388 165388 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 165659 165659 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.24%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold853 SAMTools SNP 165680 165680 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C19%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.11%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold853 SAMTools SNP 166909 166909 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold853 SAMTools SNP 167864 167864 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 167876 167876 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 168250 168250 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold853 SAMTools SNP 168424 168424 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.097%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 168430 168430 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C31%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 168945 168945 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C28%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold853 SAMTools SNP 169227 169227 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 169266 169266 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold853 SAMTools SNP 169498 169498 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold853 SAMTools SNP 169519 169519 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold853 SAMTools SNP 169545 169545 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 170867 170867 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold853 SAMTools SNP 204495 204495 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C44%2C22%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 205133 205133 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C50%2C19%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 205614 205614 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C0%2C19%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.14%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold853 SAMTools SNP 205833 205833 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C246:46 scaffold853 SAMTools SNP 209838 209838 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.055%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold853 SAMTools SNP 214985 214985 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold853 SAMTools SNP 215058 215058 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C91:31 scaffold853 SAMTools SNP 215062 215062 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold853 SAMTools SNP 216604 216604 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C124:36 scaffold853 SAMTools SNP 216652 216652 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold853 SAMTools SNP 217120 217120 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold853 SAMTools SNP 220429 220429 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold853 SAMTools SNP 220810 220810 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C3%2C3%3BMQ%3D34%3BFQ%3D-31%3BPV4%3D0.07%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C4%2C0:7 scaffold853 SAMTools SNP 223439 223439 31.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C18%2C0:33 scaffold853 SAMTools SNP 226016 226016 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.0084%2C1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold853 SAMTools SNP 226028 226028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-51%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold853 SAMTools SNP 228329 228329 102 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C7%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.62%2C8.2e-14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C171:99 scaffold853 SAMTools SNP 228695 228695 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold853 SAMTools SNP 230426 230426 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.19%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold853 SAMTools SNP 230509 230509 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold853 SAMTools SNP 230759 230759 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold853 SAMTools SNP 234119 234119 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0004%2C3.6e-10%2C1%2C4.8e-15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold853 SAMTools SNP 234669 234669 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C155:99 scaffold853 SAMTools SNP 234940 234940 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.042%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold853 SAMTools SNP 235026 235026 12 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold853 SAMTools SNP 236258 236258 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 242388 242388 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold853 SAMTools SNP 242400 242400 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold853 SAMTools SNP 242405 242405 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.14%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C78:41 scaffold853 SAMTools SNP 242905 242905 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold853 SAMTools SNP 244829 244829 122 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1518%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1475%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C255%2C0:99 scaffold853 SAMTools SNP 245132 245132 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold853 SAMTools SNP 245912 245912 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold853 SAMTools SNP 245931 245931 214 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold853 SAMTools SNP 245950 245950 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0210%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold853 SAMTools SNP 245955 245955 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.078%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 245979 245979 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C26%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.5e-05%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 246381 246381 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C3%2C24%2C3%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold853 SAMTools SNP 246387 246387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C3%2C39%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C0.00077%2C1%2C4.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 246405 246405 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D110%2C3%2C104%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.4e-07%2C0.037%2C1%2C6e-48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 246709 246709 139 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C27%2C0:51 scaffold853 SAMTools SNP 246720 246720 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold853 SAMTools SNP 246735 246735 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C52%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold853 SAMTools SNP 247222 247222 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D321%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C161%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold853 SAMTools SNP 247472 247472 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold853 SAMTools SNP 247487 247487 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C24%2C68%2C96%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 247816 247816 158 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C45%2C4%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1.8e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold853 SAMTools SNP 247884 247884 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D174%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C85%2C5%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 248397 248397 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C26%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold853 SAMTools SNP 248402 248402 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 248410 248410 4.11 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold853 SAMTools SNP 248478 248478 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C19%2C26%2C1%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.072%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold853 SAMTools SNP 250861 250861 9.31 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold853 SAMTools SNP 250952 250952 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D976%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D655%2C92%2C157%2C15%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.23%2C0.13%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold853 SAMTools SNP 252310 252310 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C1%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.54%2C0.42%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold853 SAMTools SNP 252337 252337 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C15%2C8%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0065%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 252965 252965 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0193%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.38%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold853 SAMTools SNP 253424 253424 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 253598 253598 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C8.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold853 SAMTools SNP 255169 255169 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold853 SAMTools SNP 255187 255187 135 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C69:72 scaffold853 SAMTools SNP 255413 255413 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold853 SAMTools SNP 255712 255712 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold853 SAMTools SNP 255744 255744 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 285201 285201 154 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C235:99 scaffold853 SAMTools SNP 290531 290531 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C9%2C0:16 scaffold853 SAMTools SNP 290567 290567 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold853 SAMTools SNP 292350 292350 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D360%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C357%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold853 SAMTools SNP 292590 292590 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D46%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold853 SAMTools SNP 307192 307192 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold853 SAMTools SNP 308002 308002 49.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C18%2C0:33 scaffold853 SAMTools SNP 309097 309097 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold853 SAMTools SNP 310431 310431 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C0%2C15%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold853 SAMTools SNP 310731 310731 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold853 SAMTools SNP 310773 310773 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold853 SAMTools SNP 310869 310869 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold853 SAMTools SNP 311450 311450 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C197:99 scaffold853 SAMTools SNP 312281 312281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold853 SAMTools SNP 315034 315034 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 315038 315038 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.039%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold853 SAMTools SNP 341663 341663 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold853 SAMTools SNP 341689 341689 69 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold853 SAMTools SNP 348514 348514 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D17%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold853 SAMTools SNP 348755 348755 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 348878 348878 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C146:99 scaffold853 SAMTools SNP 349668 349668 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold853 SAMTools SNP 349743 349743 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold853 SAMTools SNP 349746 349746 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold853 SAMTools SNP 351324 351324 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold853 SAMTools SNP 351351 351351 65.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C21%2C0:39 scaffold853 SAMTools SNP 352068 352068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C45%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold853 SAMTools SNP 360637 360637 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.4e-11%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C71:39 scaffold853 SAMTools SNP 360702 360702 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold853 SAMTools SNP 360703 360703 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold853 SAMTools SNP 360724 360724 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold853 SAMTools SNP 361122 361122 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C185:99 scaffold853 SAMTools SNP 361561 361561 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold853 SAMTools SNP 362173 362173 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold853 SAMTools SNP 362199 362199 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold853 SAMTools SNP 362704 362704 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold853 SAMTools SNP 363673 363673 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold853 SAMTools SNP 363718 363718 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold853 SAMTools SNP 366539 366539 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 366551 366551 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold853 SAMTools SNP 366569 366569 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold853 SAMTools SNP 366746 366746 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C242:99 scaffold853 SAMTools SNP 367266 367266 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C21%2C40%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0061%2C3.3e-21%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 367322 367322 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C105%2C6%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold853 SAMTools SNP 367341 367341 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C5%2C16%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold853 SAMTools SNP 370878 370878 19 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold853 SAMTools SNP 371183 371183 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold853 SAMTools SNP 381120 381120 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold853 SAMTools SNP 391575 391575 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold853 SAMTools SNP 398357 398357 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold853 SAMTools SNP 398492 398492 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D11%2C12%2C10%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.005%2C5.2e-10%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold853 SAMTools SNP 398513 398513 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C37%2C4%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.5e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 398552 398552 98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C3%2C35%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.67%2C1.2e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold853 SAMTools SNP 399046 399046 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold853 SAMTools SNP 399067 399067 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.27%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold853 SAMTools SNP 399088 399088 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold853 SAMTools SNP 399091 399091 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold853 SAMTools SNP 399403 399403 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C30%2C0:57 scaffold853 SAMTools SNP 399512 399512 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C51%2C0:99 scaffold853 SAMTools SNP 400108 400108 153 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C58%2C9%2C8%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.00024%2C5.4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold853 SAMTools SNP 401044 401044 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C3.2e-10%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C242:39 scaffold853 SAMTools SNP 401119 401119 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.64%2C7.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C237:78 scaffold853 SAMTools SNP 401272 401272 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.49%2C7.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C147:87 scaffold853 SAMTools SNP 401346 401346 78 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold853 SAMTools SNP 402804 402804 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C30%3BMQ%3D50%3BFQ%3D80%3BPV4%3D3e-06%2C8.2e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C107:99 scaffold853 SAMTools SNP 402953 402953 57 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D60%3BPV4%3D5.6e-06%2C5.8e-26%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C241:90 scaffold853 SAMTools SNP 403006 403006 104 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C39%2C0:75 scaffold853 SAMTools SNP 403296 403296 21.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold853 SAMTools SNP 404430 404430 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 406926 406926 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold853 SAMTools SNP 408297 408297 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C5%2C4%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.41%2C1.4e-17%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold853 SAMTools SNP 409143 409143 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold853 SAMTools SNP 413178 413178 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold853 SAMTools SNP 414057 414057 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C9%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold853 SAMTools SNP 414172 414172 7.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold853 SAMTools SNP 415500 415500 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold853 SAMTools SNP 415841 415841 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C36%2C17%2C6%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.029%2C5.5e-17%2C0.21%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold853 SAMTools SNP 419881 419881 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D130%2C72%2C60%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.32%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 420940 420940 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C188:99 scaffold853 SAMTools SNP 421457 421457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D253%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C148%2C5%2C74%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 422387 422387 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 422402 422402 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C18%2C2%2C2%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0061%2C1%2C5.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold853 SAMTools SNP 422426 422426 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C5%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold853 SAMTools SNP 422444 422444 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C38%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C4.4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold853 SAMTools SNP 423409 423409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C39%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold853 SAMTools SNP 423541 423541 204 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C18%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C247:99 scaffold853 SAMTools SNP 424018 424018 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold853 SAMTools SNP 424030 424030 184 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C0.15%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C246:99 scaffold853 SAMTools SNP 424543 424543 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.01%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold853 SAMTools SNP 425179 425179 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C24%2C0:45 scaffold853 SAMTools SNP 425191 425191 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold853 SAMTools SNP 425224 425224 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold853 SAMTools SNP 425281 425281 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C24%2C0:45 scaffold853 SAMTools SNP 427244 427244 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold853 SAMTools SNP 427259 427259 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D49%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold853 SAMTools SNP 428106 428106 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 428111 428111 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 428139 428139 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 429031 429031 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold853 SAMTools SNP 429136 429136 137 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold853 SAMTools SNP 430184 430184 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0089%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold853 SAMTools SNP 430186 430186 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold853 SAMTools SNP 430188 430188 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold853 SAMTools SNP 430201 430201 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold853 SAMTools SNP 432796 432796 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C0%3BMQ%3D40%3BFQ%3D20.1%3BPV4%3D0.029%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C229:50 scaffold853 SAMTools SNP 432813 432813 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D48%2C8%2C7%2C0%3BMQ%3D48%3BFQ%3D9.53%3BPV4%3D0.58%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold853 SAMTools SNP 432876 432876 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold853 SAMTools SNP 433471 433471 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C124%2C0%2C72%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.3%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold853 SAMTools SNP 434241 434241 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold853 SAMTools SNP 434307 434307 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D39%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C15%2C0:27 scaffold853 SAMTools SNP 434539 434539 72.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C12%2C0:21 scaffold853 SAMTools SNP 435020 435020 217 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C27%2C0:51 scaffold854 SAMTools SNP 3030 3030 72.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C12%2C0:21 scaffold854 SAMTools SNP 10457 10457 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold854 SAMTools SNP 10467 10467 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold854 SAMTools SNP 10618 10618 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold854 SAMTools SNP 24080 24080 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold854 SAMTools SNP 30112 30112 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 30145 30145 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold854 SAMTools SNP 30407 30407 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold854 SAMTools SNP 30446 30446 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold854 SAMTools SNP 30467 30467 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 31003 31003 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold854 SAMTools SNP 31042 31042 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold854 SAMTools SNP 32094 32094 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold854 SAMTools SNP 38442 38442 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C7%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C53:56 scaffold854 SAMTools SNP 38443 38443 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.24%2C0.07%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C92:56 scaffold854 SAMTools SNP 38551 38551 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold854 SAMTools SNP 40016 40016 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C221:99 scaffold854 SAMTools SNP 40040 40040 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.18%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C172:99 scaffold854 SAMTools SNP 40091 40091 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold854 SAMTools SNP 40403 40403 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C3:51 scaffold854 SAMTools SNP 41546 41546 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold854 SAMTools SNP 42258 42258 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 42550 42550 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 42574 42574 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold854 SAMTools SNP 42583 42583 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold854 SAMTools SNP 42619 42619 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 42892 42892 129 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C18%2C0:33 scaffold854 SAMTools SNP 42961 42961 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 42964 42964 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 43402 43402 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold854 SAMTools SNP 43672 43672 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 52987 52987 67 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8001%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D263%2C4631%2C109%2C2985%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.00013%2C0%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold854 SAMTools SNP 54989 54989 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2392%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1327%2C488%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 55001 55001 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2150%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D976%2C611%2C252%2C133%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.16%2C1%2C0.27%2C1.4e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold854 SAMTools SNP 56460 56460 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1247%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C29%3BMQ%3D50%3BFQ%3D-80%3BPV4%3D0.094%2C3.1e-05%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C53%2C0:99 scaffold854 SAMTools SNP 56479 56479 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1530%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C3%2C320%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.00073%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 61818 61818 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C11%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold854 SAMTools SNP 61962 61962 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 62526 62526 55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C24%2C0:45 scaffold854 SAMTools SNP 70948 70948 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold854 SAMTools SNP 71206 71206 26.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold854 SAMTools SNP 71323 71323 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold854 SAMTools SNP 73417 73417 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C93%2C0:99 scaffold854 SAMTools SNP 74771 74771 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C13%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.024%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold854 SAMTools SNP 74825 74825 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C20%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 75899 75899 135 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C19%2C20%2C19%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.29%2C1.9e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold854 SAMTools SNP 80519 80519 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.3%2C3.8e-11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C20:23 scaffold854 SAMTools SNP 81214 81214 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C134:28 scaffold854 SAMTools SNP 81422 81422 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.44%2C7.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C156:99 scaffold854 SAMTools SNP 81656 81656 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C7%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C1.7e-10%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C143:99 scaffold854 SAMTools SNP 83163 83163 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C20%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C2.4e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C248:39 scaffold854 SAMTools SNP 83193 83193 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C4%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 85923 85923 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C11%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C8.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C243:99 scaffold854 SAMTools SNP 86011 86011 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C14%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C132:43 scaffold854 SAMTools SNP 87330 87330 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold854 SAMTools SNP 95091 95091 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold854 SAMTools SNP 95550 95550 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 96094 96094 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold854 SAMTools SNP 96918 96918 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold854 SAMTools SNP 97860 97860 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold854 SAMTools SNP 108782 108782 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D3.2e-05%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold854 SAMTools SNP 113006 113006 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold854 SAMTools SNP 113159 113159 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.068%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold854 SAMTools SNP 113222 113222 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 113553 113553 21 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C3%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.18%2C5.1e-33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold854 SAMTools SNP 113627 113627 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C27%2C1%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.38%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold854 SAMTools SNP 114307 114307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C28%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 114316 114316 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 114517 114517 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.11%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 114916 114916 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C11%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 119237 119237 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold854 SAMTools SNP 120508 120508 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C18%2C38%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 121333 121333 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C60%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 121382 121382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C51%2C12%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C0.11%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 121385 121385 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C43%2C10%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C9.6e-06%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 121849 121849 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C57%2C1%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 121911 121911 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0064%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C21%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.087%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C228:30 scaffold854 SAMTools SNP 121921 121921 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold854 SAMTools SNP 122650 122650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C3%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold854 SAMTools SNP 126222 126222 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 126231 126231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C6%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold854 SAMTools SNP 126294 126294 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C56%2C0%2C16%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.00094%2C1%2C7.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold854 SAMTools SNP 126312 126312 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C5%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.2e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 126694 126694 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D4.2e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold854 SAMTools SNP 126938 126938 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C27%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold854 SAMTools SNP 127001 127001 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C9%2C51%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D0.3%2C0.13%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold854 SAMTools SNP 127007 127007 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold854 SAMTools SNP 127798 127798 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.6e-08%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 128845 128845 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.24%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C175:99 scaffold854 SAMTools SNP 128893 128893 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold854 SAMTools SNP 129338 129338 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold854 SAMTools SNP 140733 140733 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 140934 140934 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 141058 141058 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 141111 141111 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold854 SAMTools SNP 141265 141265 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.47%2C0.0028%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold854 SAMTools SNP 141309 141309 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold854 SAMTools SNP 141327 141327 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.5%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold854 SAMTools SNP 141830 141830 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C19%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.39%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C119:42 scaffold854 SAMTools SNP 141831 141831 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C13%2C4%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.38%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold854 SAMTools SNP 142003 142003 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C8%2C9%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.52%2C3.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold854 SAMTools SNP 142457 142457 155 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C19%2C14%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.091%2C1.1e-12%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C248:99 scaffold854 SAMTools SNP 143656 143656 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold854 SAMTools SNP 143689 143689 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold854 SAMTools SNP 143709 143709 14.9 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C47%2C41%2C47%2C0%2C41:10 scaffold854 SAMTools SNP 143795 143795 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0104%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D1%2C0.029%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold854 SAMTools SNP 143870 143870 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold854 SAMTools SNP 145082 145082 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C140:99 scaffold854 SAMTools SNP 145133 145133 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C0.43%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold854 SAMTools SNP 145305 145305 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.083%2C0.38%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold854 SAMTools SNP 145312 145312 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.11%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C118:99 scaffold854 SAMTools SNP 145329 145329 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold854 SAMTools SNP 145344 145344 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold854 SAMTools SNP 145356 145356 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold854 SAMTools SNP 145386 145386 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 145575 145575 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold854 SAMTools SNP 145609 145609 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 145611 145611 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold854 SAMTools SNP 146688 146688 165 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C18%2C0:33 scaffold854 SAMTools SNP 146719 146719 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C225:41 scaffold854 SAMTools SNP 147866 147866 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold854 SAMTools SNP 147885 147885 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold854 SAMTools SNP 147902 147902 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 148164 148164 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 148189 148189 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold854 SAMTools SNP 151202 151202 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold854 SAMTools SNP 151225 151225 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C24%2C0:45 scaffold854 SAMTools SNP 151278 151278 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold854 SAMTools SNP 151286 151286 144 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold854 SAMTools SNP 151846 151846 176 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.29%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold854 SAMTools SNP 151847 151847 176 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.33%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold854 SAMTools SNP 151885 151885 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold854 SAMTools SNP 153063 153063 34 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.17%2C0.0081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C217:67 scaffold854 SAMTools SNP 153070 153070 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold854 SAMTools SNP 153078 153078 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold854 SAMTools SNP 154668 154668 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 155424 155424 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 155460 155460 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold854 SAMTools SNP 156423 156423 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 156876 156876 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C3%2C0:6 scaffold854 SAMTools SNP 219750 219750 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold854 SAMTools SNP 219790 219790 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold854 SAMTools SNP 220044 220044 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold854 SAMTools SNP 224008 224008 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 238585 238585 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold854 SAMTools SNP 239566 239566 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C96:99 scaffold854 SAMTools SNP 241538 241538 8.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold854 SAMTools SNP 241592 241592 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold854 SAMTools SNP 242131 242131 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold854 SAMTools SNP 242729 242729 42 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C42:45 scaffold854 SAMTools SNP 245811 245811 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C15%2C0:27 scaffold854 SAMTools SNP 251384 251384 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold854 SAMTools SNP 251443 251443 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold854 SAMTools SNP 251459 251459 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold854 SAMTools SNP 252571 252571 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C16%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold854 SAMTools SNP 252765 252765 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C195:99 scaffold854 SAMTools SNP 252792 252792 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.2%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C113:36 scaffold854 SAMTools SNP 252992 252992 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 253096 253096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 253129 253129 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 253384 253384 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold854 SAMTools SNP 254001 254001 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.33%2C0.14%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C142:99 scaffold854 SAMTools SNP 254817 254817 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C5%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.015%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C171:99 scaffold854 SAMTools SNP 254823 254823 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.082%2C1%2C1%2C0.00059;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold854 SAMTools SNP 256511 256511 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C39%2C0:72 scaffold854 SAMTools SNP 256608 256608 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0057%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C36%2C0%2C48%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C3.6e-79%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C244:28 scaffold854 SAMTools SNP 256753 256753 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C114%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 257035 257035 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C78%2C0:99 scaffold854 SAMTools SNP 257116 257116 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C38%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 257308 257308 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D200%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C32%2C76%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 257744 257744 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 258033 258033 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C58%2C17%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C5.1e-17%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 258090 258090 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.042%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold854 SAMTools SNP 258117 258117 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold854 SAMTools SNP 258808 258808 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C0%2C10%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.32%2C0.49%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold854 SAMTools SNP 258929 258929 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C6%2C13%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.17%2C3.1e-19%2C1%2C0.00056;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold854 SAMTools SNP 259898 259898 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0073%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-24%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C3:6 scaffold854 SAMTools SNP 259973 259973 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C52%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold854 SAMTools SNP 260045 260045 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C38%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold854 SAMTools SNP 262884 262884 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C16%2C31%2C15%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.28%2C1.9e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold854 SAMTools SNP 263639 263639 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 266797 266797 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold854 SAMTools SNP 272578 272578 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold854 SAMTools SNP 272592 272592 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.41%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C66:69 scaffold854 SAMTools SNP 273050 273050 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold854 SAMTools SNP 274094 274094 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C23%2C11%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.39%2C6.5e-54%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold854 SAMTools SNP 274496 274496 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold854 SAMTools SNP 274730 274730 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold854 SAMTools SNP 275324 275324 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C2%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.61%2C1.2e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold854 SAMTools SNP 275784 275784 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C7.2e-12%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold854 SAMTools SNP 276335 276335 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C2%2C9%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold854 SAMTools SNP 276612 276612 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.55%2C1%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold854 SAMTools SNP 276971 276971 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold854 SAMTools SNP 276991 276991 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold854 SAMTools SNP 276992 276992 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold854 SAMTools SNP 287799 287799 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold854 SAMTools SNP 314311 314311 75.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C15%2C0:27 scaffold854 SAMTools SNP 314931 314931 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 316096 316096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 316101 316101 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 320874 320874 35.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold854 SAMTools SNP 320926 320926 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C0%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold854 SAMTools SNP 321371 321371 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C1%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold854 SAMTools SNP 321457 321457 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 321561 321561 34.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold854 SAMTools SNP 321597 321597 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 321787 321787 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold854 SAMTools SNP 321789 321789 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.088%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold854 SAMTools SNP 321852 321852 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold854 SAMTools SNP 328147 328147 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C84%2C0:99 scaffold854 SAMTools SNP 336120 336120 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C8.4e-07%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C221:44 scaffold854 SAMTools SNP 336496 336496 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C21%2C0:39 scaffold854 SAMTools SNP 336700 336700 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C1.2e-20%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C178:99 scaffold854 SAMTools SNP 343133 343133 38.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C6%2C0:10 scaffold854 SAMTools SNP 343171 343171 34.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold854 SAMTools SNP 343215 343215 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 345725 345725 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold854 SAMTools SNP 348016 348016 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold854 SAMTools SNP 348061 348061 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold854 SAMTools SNP 348435 348435 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold854 SAMTools SNP 348471 348471 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 348492 348492 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 348876 348876 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 348884 348884 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold854 SAMTools SNP 348958 348958 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold854 SAMTools SNP 348970 348970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold854 SAMTools SNP 349298 349298 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold854 SAMTools SNP 352232 352232 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C26%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold854 SAMTools SNP 352955 352955 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C32%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold854 SAMTools SNP 353235 353235 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C34%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.48%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 354296 354296 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C44%2C6%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0023%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 354317 354317 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C65%2C10%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 354561 354561 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C62%2C9%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.37%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 355048 355048 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D323%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C48:51 scaffold854 SAMTools SNP 355258 355258 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 355372 355372 134 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C3%2C19%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.24%2C3.3e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C236:99 scaffold854 SAMTools SNP 355432 355432 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 355589 355589 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.00061%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold854 SAMTools SNP 355621 355621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold854 SAMTools SNP 355739 355739 72 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.56%2C0.21%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold854 SAMTools SNP 355809 355809 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C29%2C0%2C27%3BMQ%3D50%3BFQ%3D101%3BPV4%3D4e-12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold854 SAMTools SNP 356220 356220 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C5%2C80%3BMQ%3D49%3BFQ%3D14.2%3BPV4%3D0.46%2C1%2C0.29%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold854 SAMTools SNP 356244 356244 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C69%3BMQ%3D49%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold854 SAMTools SNP 358176 358176 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold854 SAMTools SNP 359256 359256 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C12%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.32%2C4.6e-26%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold854 SAMTools SNP 359732 359732 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 359917 359917 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C33%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold854 SAMTools SNP 359976 359976 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C0%2C21%3BMQ%3D50%3BFQ%3D110%3BPV4%3D2.5e-07%2C2e-15%2C1%2C1.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold854 SAMTools SNP 360281 360281 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C19%2C57%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 360619 360619 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 361050 361050 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold854 SAMTools SNP 362063 362063 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C241:99 scaffold854 SAMTools SNP 362070 362070 112 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C236:99 scaffold854 SAMTools SNP 362323 362323 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.89%3BPV4%3D0.33%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C32:35 scaffold854 SAMTools SNP 362392 362392 73.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C15%2C0:27 scaffold854 SAMTools SNP 362437 362437 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C40%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C157%2C0:99 scaffold854 SAMTools SNP 362515 362515 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1.2e-05%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C206:99 scaffold854 SAMTools SNP 362526 362526 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C0%2C21%2C24%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1.2e-07%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold854 SAMTools SNP 362784 362784 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C17%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 362817 362817 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C10%2C34%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 363095 363095 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C23%2C17%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 363104 363104 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C52%2C35%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 363364 363364 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold854 SAMTools SNP 363412 363412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C37%2C22%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 363430 363430 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C17%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C6.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 363551 363551 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C30%2C0:57 scaffold854 SAMTools SNP 413696 413696 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 455068 455068 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold854 SAMTools SNP 456221 456221 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 456854 456854 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold854 SAMTools SNP 461013 461013 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold854 SAMTools SNP 461020 461020 126 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.44%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C151:99 scaffold854 SAMTools SNP 461035 461035 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold854 SAMTools SNP 461053 461053 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold854 SAMTools SNP 461083 461083 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 461638 461638 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C39%2C0:75 scaffold854 SAMTools SNP 461656 461656 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold854 SAMTools SNP 463207 463207 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold854 SAMTools SNP 463848 463848 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold854 SAMTools SNP 463878 463878 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C10%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C8.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold854 SAMTools SNP 464390 464390 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 464405 464405 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold854 SAMTools SNP 464578 464578 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold854 SAMTools SNP 464651 464651 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 464965 464965 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold854 SAMTools SNP 468899 468899 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold854 SAMTools SNP 469013 469013 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold854 SAMTools SNP 469353 469353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C26%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold854 SAMTools SNP 469662 469662 19.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold854 SAMTools SNP 469779 469779 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold854 SAMTools SNP 470799 470799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C16%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 470838 470838 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 472158 472158 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold854 SAMTools SNP 473269 473269 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 473271 473271 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold854 SAMTools SNP 473296 473296 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold854 SAMTools SNP 473317 473317 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold854 SAMTools SNP 473685 473685 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 474515 474515 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold854 SAMTools SNP 474537 474537 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.26%2C0.0088%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold854 SAMTools SNP 482339 482339 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold854 SAMTools SNP 482359 482359 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold854 SAMTools SNP 495791 495791 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 495797 495797 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 495815 495815 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 495854 495854 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 496833 496833 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 497117 497117 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold854 SAMTools SNP 497119 497119 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold854 SAMTools SNP 497753 497753 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold854 SAMTools SNP 497755 497755 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold854 SAMTools SNP 497828 497828 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 499405 499405 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 499427 499427 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold854 SAMTools SNP 499763 499763 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 499805 499805 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.43%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C29:32 scaffold854 SAMTools SNP 499817 499817 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold854 SAMTools SNP 501074 501074 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold854 SAMTools SNP 501515 501515 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.028%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold854 SAMTools SNP 501742 501742 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold854 SAMTools SNP 501765 501765 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C2.2e-11%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C132:43 scaffold854 SAMTools SNP 501772 501772 18.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.021%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C158:51 scaffold854 SAMTools SNP 501849 501849 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold854 SAMTools SNP 502427 502427 171 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold854 SAMTools SNP 502507 502507 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold854 SAMTools SNP 503144 503144 141 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold854 SAMTools SNP 503149 503149 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold854 SAMTools SNP 506341 506341 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 506356 506356 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.33%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold854 SAMTools SNP 506382 506382 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 506389 506389 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 506424 506424 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D35%3BFQ%3D10.6%3BPV4%3D1%2C0.21%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C45:39 scaffold854 SAMTools SNP 507179 507179 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 508306 508306 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold854 SAMTools SNP 513710 513710 133 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D25%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C48%2C0:93 scaffold854 SAMTools SNP 515089 515089 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D27%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C75%2C0:99 scaffold854 SAMTools SNP 515959 515959 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C69:40 scaffold854 SAMTools SNP 516444 516444 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold854 SAMTools SNP 516477 516477 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold854 SAMTools SNP 526086 526086 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold854 SAMTools SNP 558273 558273 28.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D10%2C3%2C2%2C0%3BMQ%3D18%3BFQ%3D-40%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C13%2C0:23 scaffold854 SAMTools SNP 558345 558345 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C9%2C0%3BMQ%3D41%3BFQ%3D135%3BPV4%3D0.017%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C162:99 scaffold854 SAMTools SNP 560020 560020 117 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0031%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold854 SAMTools SNP 560026 560026 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C2%2C6%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.0058%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold854 SAMTools SNP 560052 560052 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold854 SAMTools SNP 560399 560399 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C27%2C0:51 scaffold854 SAMTools SNP 581594 581594 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1.8e-28%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C119:47 scaffold854 SAMTools SNP 582028 582028 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 583148 583148 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold854 SAMTools SNP 584002 584002 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C9%2C4%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.17%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold854 SAMTools SNP 584100 584100 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold854 SAMTools SNP 584178 584178 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C21%2C30%3BMQ%3D50%3BFQ%3D193%3BPV4%3D0.0069%2C0.015%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C220:99 scaffold854 SAMTools SNP 587806 587806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.24%2C0.26%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C140:99 scaffold854 SAMTools SNP 587842 587842 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0027%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold854 SAMTools SNP 587848 587848 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.21%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C180:99 scaffold854 SAMTools SNP 621670 621670 62.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold854 SAMTools SNP 622133 622133 24.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C6%2C0:10 scaffold854 SAMTools SNP 630475 630475 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 645313 645313 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 649947 649947 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold854 SAMTools SNP 650127 650127 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold854 SAMTools SNP 698978 698978 18.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C6%2C0:10 scaffold854 SAMTools SNP 699097 699097 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C24%2C0:45 scaffold854 SAMTools SNP 701365 701365 43.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C18%2C0:33 scaffold854 SAMTools SNP 701473 701473 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold854 SAMTools SNP 704058 704058 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold854 SAMTools SNP 708614 708614 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold854 SAMTools SNP 710070 710070 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold854 SAMTools SNP 715278 715278 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold854 SAMTools SNP 728252 728252 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold858 SAMTools SNP 1835 1835 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold858 SAMTools SNP 1869 1869 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold858 SAMTools SNP 19479 19479 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold858 SAMTools SNP 19714 19714 138 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.15%2C0.03%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold858 SAMTools SNP 19765 19765 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold858 SAMTools SNP 23234 23234 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold858 SAMTools SNP 26449 26449 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C9%2C0:15 scaffold858 SAMTools SNP 28979 28979 10.4 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold858 SAMTools SNP 38447 38447 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C248:99 scaffold858 SAMTools SNP 38477 38477 199 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C16%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold858 SAMTools SNP 38648 38648 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0445%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C2.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C242:28 scaffold858 SAMTools SNP 82857 82857 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold858 SAMTools SNP 83420 83420 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C48%2C17%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.9e-05%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold858 SAMTools SNP 84283 84283 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C22%2C42%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold858 SAMTools SNP 85743 85743 116 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C19%2C0%3BMQ%3D48%3BFQ%3D119%3BPV4%3D0.023%2C4.8e-06%2C0.24%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold858 SAMTools SNP 86960 86960 138 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C14%2C41%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.011%2C1%2C1%2C5.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold858 SAMTools SNP 86963 86963 132 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C14%2C40%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.022%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold858 SAMTools SNP 86981 86981 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C16%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold858 SAMTools SNP 86987 86987 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C81%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.051%2C1%2C3.4e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold858 SAMTools SNP 87015 87015 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C53%2C25%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold858 SAMTools SNP 87630 87630 88 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C45%2C0:87 scaffold858 SAMTools SNP 89512 89512 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold858 SAMTools SNP 89531 89531 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold858 SAMTools SNP 89844 89844 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C2%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold858 SAMTools SNP 90170 90170 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C28%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0012%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold858 SAMTools SNP 90173 90173 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold858 SAMTools SNP 90403 90403 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C31%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold858 SAMTools SNP 90628 90628 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold858 SAMTools SNP 90652 90652 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C185:99 scaffold858 SAMTools SNP 91003 91003 188 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.07%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C186:99 scaffold858 SAMTools SNP 91058 91058 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold858 SAMTools SNP 91114 91114 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold858 SAMTools SNP 91132 91132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold858 SAMTools SNP 91288 91288 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold858 SAMTools SNP 91327 91327 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold858 SAMTools SNP 92189 92189 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.044%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold858 SAMTools SNP 92201 92201 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold858 SAMTools SNP 92207 92207 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold858 SAMTools SNP 92210 92210 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold858 SAMTools SNP 93244 93244 88 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C47%2C38%2C117%2C0%2C114:16 scaffold858 SAMTools SNP 93711 93711 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.12%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold858 SAMTools SNP 94105 94105 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold858 SAMTools SNP 94141 94141 38 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.026%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold858 SAMTools SNP 94246 94246 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.0078%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C191:99 scaffold858 SAMTools SNP 94439 94439 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.14%2C1%2C3.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold858 SAMTools SNP 94441 94441 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D7.4e-05%2C0.0062%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold858 SAMTools SNP 94534 94534 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C17%2C14%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.0056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold858 SAMTools SNP 101191 101191 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold858 SAMTools SNP 101230 101230 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold858 SAMTools SNP 101983 101983 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold858 SAMTools SNP 102678 102678 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold858 SAMTools SNP 102741 102741 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C15%2C0:27 scaffold858 SAMTools SNP 103519 103519 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.0028%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C72:56 scaffold858 SAMTools SNP 103566 103566 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold858 SAMTools SNP 103835 103835 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold858 SAMTools SNP 103901 103901 36.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold858 SAMTools SNP 103916 103916 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold858 SAMTools SNP 104956 104956 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold858 SAMTools SNP 104965 104965 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold858 SAMTools SNP 105308 105308 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold858 SAMTools SNP 105317 105317 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0081%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold858 SAMTools SNP 105473 105473 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold858 SAMTools SNP 105691 105691 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold858 SAMTools SNP 105740 105740 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold858 SAMTools SNP 105845 105845 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold858 SAMTools SNP 105979 105979 29.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold858 SAMTools SNP 107147 107147 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold858 SAMTools SNP 107153 107153 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold858 SAMTools SNP 112818 112818 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold86 SAMTools SNP 4472 4472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 4493 4493 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold86 SAMTools SNP 4599 4599 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold86 SAMTools SNP 51693 51693 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 51699 51699 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 52316 52316 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold86 SAMTools SNP 52331 52331 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 52627 52627 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 53863 53863 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 53884 53884 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 53971 53971 114 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C114%2C0:99 scaffold86 SAMTools SNP 54772 54772 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.0039%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold86 SAMTools SNP 54793 54793 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold86 SAMTools SNP 54811 54811 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C3.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C234:79 scaffold86 SAMTools SNP 55327 55327 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold86 SAMTools SNP 55358 55358 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C209:99 scaffold86 SAMTools SNP 55885 55885 170 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C1%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.62%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold86 SAMTools SNP 55922 55922 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.039%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C71:74 scaffold86 SAMTools SNP 56006 56006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 56552 56552 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.22%2C0.11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold86 SAMTools SNP 56573 56573 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold86 SAMTools SNP 56600 56600 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 56639 56639 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 56861 56861 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.076%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 57173 57173 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold86 SAMTools SNP 57791 57791 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold86 SAMTools SNP 57800 57800 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold86 SAMTools SNP 58216 58216 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 58688 58688 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold86 SAMTools SNP 59183 59183 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 59206 59206 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 59231 59231 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 59258 59258 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold86 SAMTools SNP 66154 66154 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C48%2C0:92 scaffold86 SAMTools SNP 66181 66181 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold86 SAMTools SNP 66226 66226 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold86 SAMTools SNP 66247 66247 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold86 SAMTools SNP 75596 75596 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.62%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold86 SAMTools SNP 81602 81602 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7990%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C7885%2C75%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 81607 81607 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7913%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7757%2C75%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 81784 81784 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2024%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C41%2C1620%2C62%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D4.1e-53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 82041 82041 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 82455 82455 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4150%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C763%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 82991 82991 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1585%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C259%2C287%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 83003 83003 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2572%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C457%2C311%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.28%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 83412 83412 111 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D875%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D170%2C298%2C41%2C290%3BMQ%3D50%3BFQ%3D114%3BPV4%3D8.2e-15%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold86 SAMTools SNP 83610 83610 8.44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold86 SAMTools SNP 83668 83668 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D155%2C8%2C232%2C122%3BMQ%3D48%3BFQ%3D103%3BPV4%3D3.9e-15%2C8.1e-196%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C229:99 scaffold86 SAMTools SNP 83744 83744 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D418%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold86 SAMTools SNP 83754 83754 11.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D320%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold86 SAMTools SNP 83909 83909 34.8 . . REF=N;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C6%2C0:10 scaffold86 SAMTools SNP 84036 84036 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D378%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C57%2C85%2C148%3BMQ%3D47%3BFQ%3D132%3BPV4%3D2.6e-05%2C4e-312%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold86 SAMTools SNP 84121 84121 12.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold86 SAMTools SNP 84564 84564 89 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C3%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C66%2C0:99 scaffold86 SAMTools SNP 85147 85147 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C16%2C47%2C40%3BMQ%3D50%3BFQ%3D39%3BPV4%3D3.6e-09%2C7.4e-121%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold86 SAMTools SNP 85205 85205 54 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D2090%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C24%2C0%2C81%2C8%2C78:45 scaffold86 SAMTools SNP 85211 85211 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2037%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold86 SAMTools SNP 89659 89659 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C2%2C45%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1.7e-75%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold86 SAMTools SNP 91070 91070 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold86 SAMTools SNP 91091 91091 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C10%2C19%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.0035%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold86 SAMTools SNP 91124 91124 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C30%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 91142 91142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C32%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.49%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 91645 91645 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C23%2C20%2C14%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.52%2C1.9e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold86 SAMTools SNP 92997 92997 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 93036 93036 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 95527 95527 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C14%2C56%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.029%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 104320 104320 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold86 SAMTools SNP 109363 109363 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.058%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 116628 116628 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D159%2C50%2C253%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C6.2e-93%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 116812 116812 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D642%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C334%2C292%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 118524 118524 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D361%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C85%2C0%2C207%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.9e-31%2C6.3e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 118948 118948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C88%2C12%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00038%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 119398 119398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C200%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 120263 120263 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C62%2C0%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 120290 120290 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 120435 120435 39.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C18%2C0:33 scaffold86 SAMTools SNP 130949 130949 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold86 SAMTools SNP 134604 134604 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 137554 137554 3.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold86 SAMTools SNP 138247 138247 44.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C12%2C0:21 scaffold86 SAMTools SNP 141837 141837 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0016%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C60:63 scaffold86 SAMTools SNP 141864 141864 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold86 SAMTools SNP 141870 141870 87.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold86 SAMTools SNP 143167 143167 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 143321 143321 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D481%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D216%2C184%2C8%2C60%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1.9e-11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold86 SAMTools SNP 145683 145683 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C58%3BMQ%3D50%3BFQ%3D34%3BPV4%3D3.4e-07%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C61:64 scaffold86 SAMTools SNP 146495 146495 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C157%2C64%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 146525 146525 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D146%2C1%2C169%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.5e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 147072 147072 129 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C4%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0021%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C225:99 scaffold86 SAMTools SNP 147086 147086 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C71%2C2%2C21%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.73%2C0.21%2C1%2C1.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold86 SAMTools SNP 147097 147097 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D343%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C52%2C219%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.1e-17%2C0.27%2C1%2C4.8e-31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 149938 149938 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold86 SAMTools SNP 151251 151251 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold86 SAMTools SNP 152439 152439 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.28%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C218:69 scaffold86 SAMTools SNP 152570 152570 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold86 SAMTools SNP 156817 156817 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C82%2C0%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.6e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 156829 156829 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C57%2C0%2C30%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold86 SAMTools SNP 156856 156856 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C66%2C0%2C30%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C9.5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold86 SAMTools SNP 159460 159460 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1647%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D673%2C272%2C448%2C186%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 160461 160461 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7126%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3313%2C196%2C2856%2C101%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.9e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 162930 162930 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 162943 162943 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold86 SAMTools SNP 162991 162991 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C25%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.16%2C0.24%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold86 SAMTools SNP 163015 163015 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C29%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 164798 164798 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.13%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold86 SAMTools SNP 165388 165388 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold86 SAMTools SNP 165512 165512 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold86 SAMTools SNP 165688 165688 64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C3%2C0:6 scaffold86 SAMTools SNP 165712 165712 16.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold86 SAMTools SNP 165715 165715 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold86 SAMTools SNP 166508 166508 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.43%2C5.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C163:34 scaffold86 SAMTools SNP 167928 167928 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold86 SAMTools SNP 168106 168106 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.32%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C32:35 scaffold86 SAMTools SNP 169128 169128 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 170802 170802 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 170805 170805 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 177195 177195 97 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.4%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C72:75 scaffold86 SAMTools SNP 178332 178332 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold86 SAMTools SNP 178380 178380 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.79%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C60:34 scaffold86 SAMTools SNP 181806 181806 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.035%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold86 SAMTools SNP 181809 181809 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold86 SAMTools SNP 187321 187321 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.05%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C215:47 scaffold86 SAMTools SNP 187327 187327 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold86 SAMTools SNP 187343 187343 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold86 SAMTools SNP 187353 187353 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 187596 187596 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C0.079%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C182:99 scaffold86 SAMTools SNP 187617 187617 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.2%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold86 SAMTools SNP 188013 188013 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 188047 188047 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold86 SAMTools SNP 188506 188506 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 188951 188951 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 188953 188953 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold86 SAMTools SNP 192718 192718 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold86 SAMTools SNP 192763 192763 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 200545 200545 3.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold86 SAMTools SNP 204261 204261 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.048%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold86 SAMTools SNP 238030 238030 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold86 SAMTools SNP 239310 239310 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D39%3BFQ%3D46%3BPV4%3D1%2C0.37%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C73:76 scaffold86 SAMTools SNP 239416 239416 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C31%2C5%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.29%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 240099 240099 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C9%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold86 SAMTools SNP 240537 240537 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D1%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C99%2C0:81 scaffold86 SAMTools SNP 244229 244229 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold86 SAMTools SNP 252514 252514 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 252556 252556 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold86 SAMTools SNP 252573 252573 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold86 SAMTools SNP 254108 254108 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 254142 254142 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 257328 257328 30.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold86 SAMTools SNP 261025 261025 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D1%2C0.015%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C21:24 scaffold86 SAMTools SNP 261110 261110 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 269006 269006 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.66%2C0.31%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 269017 269017 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.11%2C0.00073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold86 SAMTools SNP 270136 270136 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C5%2C5%3BMQ%3D48%3BFQ%3D213%3BPV4%3D0.4%2C0.078%2C0.044%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold86 SAMTools SNP 270299 270299 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C25%2C2%2C12%3BMQ%3D48%3BFQ%3D190%3BPV4%3D0.6%2C0.045%2C0.0058%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold86 SAMTools SNP 270418 270418 29.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C6%2C0:10 scaffold86 SAMTools SNP 271461 271461 194 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C14%2C39%2C33%3BMQ%3D28%3BFQ%3D190%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C218:99 scaffold86 SAMTools SNP 274011 274011 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold86 SAMTools SNP 274012 274012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.41%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 274386 274386 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C1%2C7%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.36%2C0.0058%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C235:99 scaffold86 SAMTools SNP 274944 274944 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C250:99 scaffold86 SAMTools SNP 274969 274969 223 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C234:99 scaffold86 SAMTools SNP 276556 276556 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C0%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold86 SAMTools SNP 280149 280149 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold86 SAMTools SNP 280214 280214 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 280359 280359 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 283629 283629 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 288127 288127 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold86 SAMTools SNP 289462 289462 9.53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold86 SAMTools SNP 292182 292182 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D49%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C236:99 scaffold86 SAMTools SNP 292633 292633 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C10%2C0%3BMQ%3D46%3BFQ%3D149%3BPV4%3D0.27%2C0.19%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold86 SAMTools SNP 292762 292762 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C2%2C13%2C9%3BMQ%3D23%3BFQ%3D-52%3BPV4%3D0.68%2C0.26%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C25%2C0:47 scaffold86 SAMTools SNP 293165 293165 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C5%2C2%2C14%3BMQ%3D26%3BFQ%3D-42%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold86 SAMTools SNP 314589 314589 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C15%2C3%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.61%2C3e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold86 SAMTools SNP 317423 317423 103 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C36%2C0%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C9.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C238:99 scaffold86 SAMTools SNP 318431 318431 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C24%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold86 SAMTools SNP 318820 318820 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C24%2C24%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C0:99 scaffold86 SAMTools SNP 318887 318887 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 319939 319939 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 320034 320034 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C21%2C0:39 scaffold86 SAMTools SNP 320397 320397 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C12%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C242:99 scaffold86 SAMTools SNP 324832 324832 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.3e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C225:57 scaffold86 SAMTools SNP 324901 324901 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C0%2C19%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.00019%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold86 SAMTools SNP 329391 329391 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C39%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold86 SAMTools SNP 329412 329412 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.081%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold86 SAMTools SNP 330539 330539 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C12%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C181%2C0:99 scaffold86 SAMTools SNP 332085 332085 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 332117 332117 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 332453 332453 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 337382 337382 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold86 SAMTools SNP 337696 337696 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C24%2C6%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D0.23%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C55%2C0:99 scaffold86 SAMTools SNP 337777 337777 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C42%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold86 SAMTools SNP 338099 338099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C7%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 338553 338553 92 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D95%3BPV4%3D1%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold86 SAMTools SNP 338562 338562 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold86 SAMTools SNP 338709 338709 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C15%2C0:27 scaffold86 SAMTools SNP 338730 338730 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C6%3BMQ%3D49%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold86 SAMTools SNP 339080 339080 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C11%3BMQ%3D47%3BFQ%3D174%3BPV4%3D0.029%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold86 SAMTools SNP 345640 345640 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C0%2C11%3BMQ%3D47%3BFQ%3D174%3BPV4%3D0.029%2C3.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold86 SAMTools SNP 346222 346222 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C6%2C0%3BMQ%3D49%3BFQ%3D76%3BPV4%3D1%2C0.022%2C0.018%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold86 SAMTools SNP 346231 346231 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C6%2C0%3BMQ%3D49%3BFQ%3D73%3BPV4%3D1%2C0.084%2C0.016%2C0.00058;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold86 SAMTools SNP 346269 346269 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C1%2C5%3BMQ%3D47%3BFQ%3D47%3BPV4%3D0.00032%2C0.0062%2C0.32%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold86 SAMTools SNP 347365 347365 135 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C6%2C7%2C5%3BMQ%3D44%3BFQ%3D138%3BPV4%3D0.46%2C0.058%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold86 SAMTools SNP 348588 348588 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C22%2C0%3BMQ%3D36%3BFQ%3D146%3BPV4%3D0.00026%2C1%2C0.009%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold86 SAMTools SNP 348659 348659 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C36%3BMQ%3D43%3BFQ%3D-155%3BPV4%3D1%2C1%2C0.28%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold86 SAMTools SNP 349180 349180 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C20%2C42%2C7%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 349240 349240 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C21%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold86 SAMTools SNP 349504 349504 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C23%2C6%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 349522 349522 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C9%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 349876 349876 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 350457 350457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 351503 351503 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C98%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 352356 352356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C8%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 353577 353577 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C10%2C8%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.22%2C0.48%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold86 SAMTools SNP 353616 353616 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C26%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 354780 354780 149 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.018%2C0.1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold86 SAMTools SNP 354789 354789 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.0006%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold86 SAMTools SNP 357561 357561 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 362312 362312 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 363759 363759 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 364513 364513 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C198:66 scaffold86 SAMTools SNP 364514 364514 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C201:66 scaffold86 SAMTools SNP 364637 364637 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C2%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.14%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold86 SAMTools SNP 364646 364646 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.0067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 365131 365131 32.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold86 SAMTools SNP 365187 365187 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C33%2C0:63 scaffold86 SAMTools SNP 365921 365921 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 366387 366387 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold86 SAMTools SNP 368576 368576 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.26%2C0.00072%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold86 SAMTools SNP 369111 369111 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold86 SAMTools SNP 373042 373042 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold86 SAMTools SNP 374097 374097 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold86 SAMTools SNP 376949 376949 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C187:99 scaffold86 SAMTools SNP 377021 377021 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold86 SAMTools SNP 377469 377469 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold86 SAMTools SNP 377520 377520 185 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold86 SAMTools SNP 377925 377925 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D74.2%3BPV4%3D0.5%2C4.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C102:99 scaffold86 SAMTools SNP 377967 377967 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold86 SAMTools SNP 378003 378003 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold86 SAMTools SNP 378216 378216 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C16%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold86 SAMTools SNP 378231 378231 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold86 SAMTools SNP 378548 378548 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold86 SAMTools SNP 378563 378563 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C21%2C0:39 scaffold86 SAMTools SNP 378662 378662 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C18%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.015%2C0.03%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold86 SAMTools SNP 379025 379025 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C14%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold86 SAMTools SNP 379062 379062 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C128:77 scaffold86 SAMTools SNP 379223 379223 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold86 SAMTools SNP 379253 379253 160 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C8%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.23%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold86 SAMTools SNP 379824 379824 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold86 SAMTools SNP 380460 380460 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.21%2C0.48%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold86 SAMTools SNP 380505 380505 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.07%2C0.0015%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold86 SAMTools SNP 380511 380511 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 381175 381175 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0022%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.0025%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C158:34 scaffold86 SAMTools SNP 381810 381810 25.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold86 SAMTools SNP 381847 381847 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C82:43 scaffold86 SAMTools SNP 381859 381859 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold86 SAMTools SNP 382517 382517 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold86 SAMTools SNP 383001 383001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 383037 383037 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C8%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold86 SAMTools SNP 383268 383268 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C63%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold86 SAMTools SNP 383593 383593 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold86 SAMTools SNP 383611 383611 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 383626 383626 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold86 SAMTools SNP 384063 384063 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold86 SAMTools SNP 384090 384090 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold86 SAMTools SNP 384255 384255 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 384258 384258 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 395262 395262 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 395334 395334 36.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold86 SAMTools SNP 473734 473734 33.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C19%2C10%3BMQ%3D49%3BFQ%3D-44%3BPV4%3D1%2C5.6e-10%2C0.4%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C17%2C0:31 scaffold86 SAMTools SNP 473822 473822 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C10%2C17%3BMQ%3D49%3BFQ%3D91%3BPV4%3D0.64%2C7.3e-23%2C0.34%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C118:99 scaffold86 SAMTools SNP 498074 498074 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D13%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C87%2C0:99 scaffold86 SAMTools SNP 501544 501544 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold86 SAMTools SNP 501755 501755 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold86 SAMTools SNP 502223 502223 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D35%3BFQ%3D6.04%3BPV4%3D1%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C45:31 scaffold86 SAMTools SNP 503660 503660 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold86 SAMTools SNP 503881 503881 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.26%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold86 SAMTools SNP 503923 503923 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.089%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold86 SAMTools SNP 527824 527824 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold86 SAMTools SNP 570665 570665 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C3.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C188:49 scaffold86 SAMTools SNP 570802 570802 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C8.1e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C222:30 scaffold86 SAMTools SNP 571861 571861 37.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold86 SAMTools SNP 579133 579133 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold86 SAMTools SNP 590451 590451 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C81%2C0:99 scaffold86 SAMTools SNP 591863 591863 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:179%2C21%2C0:39 scaffold86 SAMTools SNP 592238 592238 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C5%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.087%2C9.1e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold86 SAMTools SNP 592704 592704 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C15%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.052%2C6e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold86 SAMTools SNP 593072 593072 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C9%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.043%2C6.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C254:87 scaffold86 SAMTools SNP 593119 593119 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C45%2C0:87 scaffold86 SAMTools SNP 593314 593314 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C104:99 scaffold86 SAMTools SNP 595049 595049 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold86 SAMTools SNP 597891 597891 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold86 SAMTools SNP 598386 598386 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C74%2C6%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 599754 599754 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold86 SAMTools SNP 603335 603335 212 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C255%2C0:99 scaffold86 SAMTools SNP 603698 603698 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C110:88 scaffold86 SAMTools SNP 603879 603879 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold86 SAMTools SNP 603891 603891 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 603939 603939 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold86 SAMTools SNP 603962 603962 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 604148 604148 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C14%2C0%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.04%2C3.1e-11%2C1%2C1.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold86 SAMTools SNP 604190 604190 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C17%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 604398 604398 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C20%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 604456 604456 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C19%3BMQ%3D50%3BFQ%3D-4.12%3BPV4%3D0.37%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C25:28 scaffold86 SAMTools SNP 604474 604474 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C21%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold86 SAMTools SNP 604527 604527 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C19%2C8%2C3%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.19%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold86 SAMTools SNP 605116 605116 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C8%2C5%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold86 SAMTools SNP 608681 608681 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C10%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00064%2C4.2e-05%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold86 SAMTools SNP 609327 609327 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.1%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold86 SAMTools SNP 609791 609791 59 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.038%2C0.0025%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold86 SAMTools SNP 609807 609807 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C8%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.007%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C225:99 scaffold86 SAMTools SNP 609821 609821 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.074%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 610499 610499 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C1%2C5%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.38%2C2.2e-10%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold86 SAMTools SNP 610762 610762 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C12%2C2%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.077%2C0.00031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold86 SAMTools SNP 611087 611087 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.47%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 611614 611614 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C248:99 scaffold86 SAMTools SNP 611689 611689 70 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1.1e-14%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold86 SAMTools SNP 614721 614721 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.51%2C0.31%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold86 SAMTools SNP 615035 615035 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C3%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold86 SAMTools SNP 615293 615293 56 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.033%2C2.7e-08%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold86 SAMTools SNP 615610 615610 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C8%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 616290 616290 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 617233 617233 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C166:31 scaffold86 SAMTools SNP 618774 618774 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C4%2C7%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 619142 619142 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C34%2C36%2C1%3BMQ%3D44%3BFQ%3D25%3BPV4%3D3.1e-07%2C5.4e-19%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold86 SAMTools SNP 619524 619524 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C0%3BMQ%3D46%3BFQ%3D66%3BPV4%3D1%2C0.18%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C218:96 scaffold86 SAMTools SNP 619905 619905 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D46%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C196:99 scaffold86 SAMTools SNP 620074 620074 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 620135 620135 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold86 SAMTools SNP 620658 620658 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C30%2C0%2C3%3BMQ%3D39%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C189:31 scaffold86 SAMTools SNP 621114 621114 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C3%2C1%3BMQ%3D49%3BFQ%3D62%3BPV4%3D0.59%2C1%2C0.021%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold86 SAMTools SNP 621318 621318 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D33%3BFQ%3D42.2%3BPV4%3D0.46%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C77:72 scaffold86 SAMTools SNP 652224 652224 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold86 SAMTools SNP 652663 652663 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold86 SAMTools SNP 652817 652817 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 652831 652831 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold86 SAMTools SNP 653696 653696 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold86 SAMTools SNP 653726 653726 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.25%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold86 SAMTools SNP 654374 654374 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C176:99 scaffold86 SAMTools SNP 654377 654377 51 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.26%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold86 SAMTools SNP 654852 654852 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C30%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold86 SAMTools SNP 654904 654904 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00031%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 654937 654937 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold86 SAMTools SNP 654984 654984 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.21%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold86 SAMTools SNP 655076 655076 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C9%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0023%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold86 SAMTools SNP 655105 655105 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold86 SAMTools SNP 655456 655456 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 662091 662091 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0158%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold86 SAMTools SNP 662217 662217 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C0.0029%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C127:48 scaffold86 SAMTools SNP 662467 662467 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold86 SAMTools SNP 662484 662484 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold86 SAMTools SNP 662490 662490 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold86 SAMTools SNP 663996 663996 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold86 SAMTools SNP 665022 665022 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold86 SAMTools SNP 687913 687913 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 688925 688925 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 689331 689331 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 693302 693302 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold86 SAMTools SNP 696807 696807 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 697221 697221 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 709798 709798 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C37:40 scaffold86 SAMTools SNP 710112 710112 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold86 SAMTools SNP 710283 710283 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold86 SAMTools SNP 710334 710334 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C0%2C10%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C229:99 scaffold86 SAMTools SNP 710367 710367 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C1%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C239:99 scaffold86 SAMTools SNP 710655 710655 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold86 SAMTools SNP 710678 710678 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0100%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D20%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.0043%2C0.00091%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold86 SAMTools SNP 710679 710679 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C9%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.61%2C0.42%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold86 SAMTools SNP 710946 710946 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold86 SAMTools SNP 711217 711217 187 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.23%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C162:99 scaffold86 SAMTools SNP 711916 711916 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold86 SAMTools SNP 712192 712192 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C0.061%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 712694 712694 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.49%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold86 SAMTools SNP 712726 712726 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C158:99 scaffold86 SAMTools SNP 713135 713135 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold86 SAMTools SNP 713159 713159 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold86 SAMTools SNP 713171 713171 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold86 SAMTools SNP 713177 713177 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold86 SAMTools SNP 714930 714930 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold86 SAMTools SNP 714996 714996 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold86 SAMTools SNP 715322 715322 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 715344 715344 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 715383 715383 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 716772 716772 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.0037%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold86 SAMTools SNP 716799 716799 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold86 SAMTools SNP 719269 719269 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold86 SAMTools SNP 720534 720534 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C10%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.62%2C0.22%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold86 SAMTools SNP 736160 736160 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold86 SAMTools SNP 779978 779978 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 782888 782888 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 782893 782893 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 783176 783176 34.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold86 SAMTools SNP 783434 783434 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold86 SAMTools SNP 783872 783872 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold86 SAMTools SNP 783920 783920 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold86 SAMTools SNP 783998 783998 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 784154 784154 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold86 SAMTools SNP 784220 784220 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 785899 785899 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C27:30 scaffold86 SAMTools SNP 785911 785911 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold86 SAMTools SNP 786388 786388 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.43%2C1.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C134:39 scaffold86 SAMTools SNP 786800 786800 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C81%2C0:99 scaffold86 SAMTools SNP 792463 792463 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.00094%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C80:52 scaffold86 SAMTools SNP 793457 793457 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 794144 794144 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold86 SAMTools SNP 794185 794185 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold86 SAMTools SNP 794378 794378 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold86 SAMTools SNP 796473 796473 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 800279 800279 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 815316 815316 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 815346 815346 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 815367 815367 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold86 SAMTools SNP 816613 816613 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C1%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 816664 816664 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C13%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.25%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 816691 816691 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C51%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold86 SAMTools SNP 817841 817841 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C52%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 818139 818139 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C81%2C1%2C26%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.25%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C247:99 scaffold86 SAMTools SNP 818469 818469 66 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold86 SAMTools SNP 818495 818495 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 819869 819869 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.23%2C0.043%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C142:99 scaffold86 SAMTools SNP 819926 819926 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold86 SAMTools SNP 820310 820310 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold86 SAMTools SNP 820532 820532 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 820723 820723 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 820762 820762 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold86 SAMTools SNP 821135 821135 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold86 SAMTools SNP 821164 821164 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold86 SAMTools SNP 821691 821691 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold86 SAMTools SNP 821714 821714 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold86 SAMTools SNP 821736 821736 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C9%2C0:16 scaffold86 SAMTools SNP 821742 821742 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold86 SAMTools SNP 822938 822938 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold86 SAMTools SNP 823007 823007 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C31%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold86 SAMTools SNP 823641 823641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold86 SAMTools SNP 868241 868241 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C0%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:146%2C178%2C0:99 scaffold86 SAMTools SNP 868311 868311 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C57%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C184%2C0:99 scaffold86 SAMTools SNP 869943 869943 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 869951 869951 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold86 SAMTools SNP 870363 870363 186 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C111%2C0%2C218%2C94%2C215:99 scaffold86 SAMTools SNP 871025 871025 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C7%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 871076 871076 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 872474 872474 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.089%2C0.24%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C207:99 scaffold86 SAMTools SNP 872718 872718 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.55%2C0.00025%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold86 SAMTools SNP 873243 873243 172 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold86 SAMTools SNP 873734 873734 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold86 SAMTools SNP 873740 873740 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold86 SAMTools SNP 874213 874213 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C15%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C0.022%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 875462 875462 149 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C50%2C0%2C17%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold86 SAMTools SNP 877308 877308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 877323 877323 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C211:99 scaffold86 SAMTools SNP 877383 877383 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold86 SAMTools SNP 877397 877397 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold86 SAMTools SNP 877404 877404 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0079%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold86 SAMTools SNP 882441 882441 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 884229 884229 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C1%2C5%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.25%2C0.0005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C239:86 scaffold86 SAMTools SNP 884283 884283 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C6%2C13%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.14%2C7.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C176:99 scaffold86 SAMTools SNP 884418 884418 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 884447 884447 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold86 SAMTools SNP 885955 885955 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 886069 886069 169 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold86 SAMTools SNP 887849 887849 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.21%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold86 SAMTools SNP 887903 887903 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C5%3BMQ%3D50%3BFQ%3D67.8%3BPV4%3D0.55%2C8.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C109:98 scaffold86 SAMTools SNP 887984 887984 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C18%2C0:33 scaffold86 SAMTools SNP 888014 888014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C8%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold86 SAMTools SNP 893626 893626 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold86 SAMTools SNP 896592 896592 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 896607 896607 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 901879 901879 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C0.15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 902233 902233 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C156:34 scaffold86 SAMTools SNP 907080 907080 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C9%2C7%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.39%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold86 SAMTools SNP 910079 910079 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold86 SAMTools SNP 910181 910181 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C162%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold86 SAMTools SNP 910211 910211 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C21%2C33%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 910438 910438 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C79%2C8%2C66%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 910880 910880 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C92%2C9%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 911251 911251 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C4%2C7%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.17%2C0.065%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold86 SAMTools SNP 915146 915146 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 916796 916796 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 917010 917010 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 917025 917025 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 921580 921580 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C3%2C17%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.096%2C3.6e-08%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold86 SAMTools SNP 921601 921601 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C19%2C0%2C28%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.035%2C7.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold86 SAMTools SNP 923568 923568 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C6%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold86 SAMTools SNP 924273 924273 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C12%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.031%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C214:99 scaffold86 SAMTools SNP 927709 927709 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.058%2C1%2C0.00077;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C152:46 scaffold86 SAMTools SNP 928439 928439 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold86 SAMTools SNP 938134 938134 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 938142 938142 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold86 SAMTools SNP 940453 940453 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 940477 940477 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 940488 940488 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 941125 941125 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold86 SAMTools SNP 941455 941455 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold86 SAMTools SNP 942342 942342 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold86 SAMTools SNP 945815 945815 7.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold86 SAMTools SNP 946193 946193 192 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold86 SAMTools SNP 947047 947047 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold86 SAMTools SNP 952899 952899 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold86 SAMTools SNP 955498 955498 140 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C11%2C81%3BMQ%3D47%3BFQ%3D139%3BPV4%3D0.18%2C3.4e-51%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C169:99 scaffold86 SAMTools SNP 955534 955534 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C82%2C21%2C6%3BMQ%3D47%3BFQ%3D96%3BPV4%3D6.1e-05%2C0.49%2C0.3%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold86 SAMTools SNP 956289 956289 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold86 SAMTools SNP 956310 956310 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold86 SAMTools SNP 956334 956334 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.35%2C0.38%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold86 SAMTools SNP 956394 956394 213 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C20%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.29%2C0.21%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C202:99 scaffold86 SAMTools SNP 956396 956396 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C22%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C0.023%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C213:99 scaffold86 SAMTools SNP 956843 956843 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold86 SAMTools SNP 956895 956895 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.49%2C0.25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C127:99 scaffold86 SAMTools SNP 957170 957170 130 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold86 SAMTools SNP 957230 957230 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold86 SAMTools SNP 957775 957775 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold86 SAMTools SNP 957823 957823 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 958202 958202 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold86 SAMTools SNP 959123 959123 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold86 SAMTools SNP 959619 959619 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold86 SAMTools SNP 959644 959644 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00065%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C80:28 scaffold86 SAMTools SNP 959766 959766 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C203:79 scaffold86 SAMTools SNP 961201 961201 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C1%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 961593 961593 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 961773 961773 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C21%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 963528 963528 10.4 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold86 SAMTools SNP 966325 966325 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 966516 966516 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C15%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.022%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 966603 966603 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C5%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 966881 966881 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold86 SAMTools SNP 967171 967171 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold86 SAMTools SNP 967723 967723 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C11%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.22%2C0.025%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold86 SAMTools SNP 967746 967746 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold86 SAMTools SNP 967795 967795 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D72.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C100:99 scaffold86 SAMTools SNP 967976 967976 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 968405 968405 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 968406 968406 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 968795 968795 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold86 SAMTools SNP 969139 969139 154 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C1%2C1%2C0.0078;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold86 SAMTools SNP 969160 969160 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold86 SAMTools SNP 969199 969199 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C14%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.012%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 970130 970130 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 970193 970193 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C31%2C25%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C0.0097%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 970202 970202 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C21%2C27%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 970643 970643 195 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C2%2C9%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.69%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold86 SAMTools SNP 970667 970667 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C27%2C0%2C8%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C239:99 scaffold86 SAMTools SNP 1007470 1007470 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1007561 1007561 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.031%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold86 SAMTools SNP 1012875 1012875 81.3 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C15%2C0:27 scaffold86 SAMTools SNP 1025658 1025658 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1025709 1025709 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1025766 1025766 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 1026453 1026453 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1030521 1030521 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold86 SAMTools SNP 1031416 1031416 159 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold86 SAMTools SNP 1068278 1068278 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1068506 1068506 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1068530 1068530 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold86 SAMTools SNP 1122359 1122359 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.00034%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold86 SAMTools SNP 1122367 1122367 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold86 SAMTools SNP 1123200 1123200 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold86 SAMTools SNP 1123584 1123584 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold86 SAMTools SNP 1123622 1123622 51.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold86 SAMTools SNP 1129012 1129012 10.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C21%2C0:28 scaffold86 SAMTools SNP 1138889 1138889 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D135%2C15%2C61%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.0067%2C1.7e-23%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold86 SAMTools SNP 1139444 1139444 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1012%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D179%2C154%2C305%2C371%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C5.9e-141%2C1%2C5e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1139648 1139648 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D705%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C209%2C33%2C411%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0007%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1139658 1139658 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D650%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C375%2C21%2C200%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1146503 1146503 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C183:99 scaffold86 SAMTools SNP 1146877 1146877 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C127:99 scaffold86 SAMTools SNP 1146958 1146958 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D10.9%3BPV4%3D1%2C0.0065%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C38:41 scaffold86 SAMTools SNP 1147282 1147282 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C110:99 scaffold86 SAMTools SNP 1148836 1148836 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold86 SAMTools SNP 1149176 1149176 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold86 SAMTools SNP 1149236 1149236 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold86 SAMTools SNP 1149249 1149249 6.98 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold86 SAMTools SNP 1150333 1150333 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0017%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold86 SAMTools SNP 1151844 1151844 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1152811 1152811 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C5%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold86 SAMTools SNP 1152838 1152838 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold86 SAMTools SNP 1153146 1153146 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0094%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.0094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C230:42 scaffold86 SAMTools SNP 1153152 1153152 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold86 SAMTools SNP 1153800 1153800 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1153812 1153812 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1154417 1154417 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1154450 1154450 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold86 SAMTools SNP 1154563 1154563 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C153:99 scaffold86 SAMTools SNP 1154798 1154798 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold86 SAMTools SNP 1154855 1154855 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C42%2C0:81 scaffold86 SAMTools SNP 1155675 1155675 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1156201 1156201 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1156394 1156394 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1156621 1156621 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1157382 1157382 121 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 1157401 1157401 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 1157732 1157732 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 1158178 1158178 15.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold86 SAMTools SNP 1158796 1158796 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1159620 1159620 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C7%2C0%3BMQ%3D49%3BFQ%3D142%3BPV4%3D0.12%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold86 SAMTools SNP 1160355 1160355 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold86 SAMTools SNP 1160361 1160361 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold86 SAMTools SNP 1160748 1160748 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold86 SAMTools SNP 1160819 1160819 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold86 SAMTools SNP 1161229 1161229 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C12%2C0:21 scaffold86 SAMTools SNP 1161248 1161248 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1161388 1161388 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold86 SAMTools SNP 1161568 1161568 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold86 SAMTools SNP 1163499 1163499 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C223:40 scaffold86 SAMTools SNP 1163520 1163520 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold86 SAMTools SNP 1184824 1184824 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 1186390 1186390 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 1186435 1186435 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1186807 1186807 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold86 SAMTools SNP 1187322 1187322 24.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C15%2C0:27 scaffold86 SAMTools SNP 1193460 1193460 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C39%2C0:75 scaffold86 SAMTools SNP 1194363 1194363 43.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold86 SAMTools SNP 1195268 1195268 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C29%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1195468 1195468 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C15%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold86 SAMTools SNP 1195791 1195791 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold86 SAMTools SNP 1195827 1195827 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold86 SAMTools SNP 1196068 1196068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold86 SAMTools SNP 1196870 1196870 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C6%3BMQ%3D34%3BFQ%3D45%3BPV4%3D0.5%2C1%2C0.0028%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C121:75 scaffold86 SAMTools SNP 1197331 1197331 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold86 SAMTools SNP 1198780 1198780 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C0%2C5%3BMQ%3D35%3BFQ%3D-31%3BPV4%3D1%2C0.25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C4%2C0:7 scaffold86 SAMTools SNP 1199184 1199184 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold86 SAMTools SNP 1200460 1200460 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C22%2C4%2C5%3BMQ%3D50%3BFQ%3D216%3BPV4%3D0.21%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold86 SAMTools SNP 1200835 1200835 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D46%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.58%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold86 SAMTools SNP 1201076 1201076 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C28%2C8%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1201079 1201079 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C27%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1201278 1201278 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1201731 1201731 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.28%2C5e-06%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold86 SAMTools SNP 1203113 1203113 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.51%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold86 SAMTools SNP 1203393 1203393 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold86 SAMTools SNP 1203682 1203682 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.066%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold86 SAMTools SNP 1203744 1203744 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C7%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.084%2C0.0004%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold86 SAMTools SNP 1204072 1204072 220 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C3%2C6%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.29%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold86 SAMTools SNP 1204111 1204111 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C4%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.3%2C0.37%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold86 SAMTools SNP 1204610 1204610 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.24%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C34:37 scaffold86 SAMTools SNP 1204832 1204832 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold86 SAMTools SNP 1204834 1204834 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold86 SAMTools SNP 1205005 1205005 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C1%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1205564 1205564 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold86 SAMTools SNP 1205815 1205815 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold86 SAMTools SNP 1205872 1205872 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.54%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold86 SAMTools SNP 1206673 1206673 220 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C5%2C4%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.15%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C212:99 scaffold86 SAMTools SNP 1214818 1214818 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold86 SAMTools SNP 1215322 1215322 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1215557 1215557 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold86 SAMTools SNP 1217130 1217130 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C165:99 scaffold86 SAMTools SNP 1217135 1217135 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C140:99 scaffold86 SAMTools SNP 1218256 1218256 174 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C4%2C2%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.12%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold86 SAMTools SNP 1218776 1218776 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold86 SAMTools SNP 1219642 1219642 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C3%2C51%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1224023 1224023 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1226522 1226522 148 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold86 SAMTools SNP 1234087 1234087 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D90%2C0%2C100%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1234302 1234302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D298%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C88%2C74%2C95%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1234344 1234344 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C39%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00071%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1239655 1239655 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold86 SAMTools SNP 1245645 1245645 74.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold86 SAMTools SNP 1247459 1247459 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold86 SAMTools SNP 1247499 1247499 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold86 SAMTools SNP 1253509 1253509 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0160%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C0%3BMQ%3D48%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold86 SAMTools SNP 1255912 1255912 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.56%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold86 SAMTools SNP 1257293 1257293 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold86 SAMTools SNP 1257519 1257519 122 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C5%3BMQ%3D48%3BFQ%3D123%3BPV4%3D1%2C0.48%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C155:99 scaffold86 SAMTools SNP 1257541 1257541 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold86 SAMTools SNP 1263567 1263567 42 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.25%2C3e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C126:75 scaffold86 SAMTools SNP 1265671 1265671 27.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold86 SAMTools SNP 1268489 1268489 176 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold86 SAMTools SNP 1271018 1271018 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.31%2C0.097%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C208:99 scaffold86 SAMTools SNP 1272776 1272776 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0037%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1273888 1273888 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1288265 1288265 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.027%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold86 SAMTools SNP 1290400 1290400 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0001%2C5.5e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold86 SAMTools SNP 1291374 1291374 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C7%2C6%2C2%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold86 SAMTools SNP 1291476 1291476 137 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:170%2C18%2C0:33 scaffold86 SAMTools SNP 1291515 1291515 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C10%2C47%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1.2e-05%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1291938 1291938 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1.1e-20%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1291989 1291989 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C7%3BMQ%3D49%3BFQ%3D186%3BPV4%3D0.12%2C1%2C0.094%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C238:99 scaffold86 SAMTools SNP 1293344 1293344 125 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C6%3BMQ%3D49%3BFQ%3D128%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold86 SAMTools SNP 1293347 1293347 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C7%3BMQ%3D49%3BFQ%3D133%3BPV4%3D0.24%2C0.4%2C0.24%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold86 SAMTools SNP 1293599 1293599 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1293676 1293676 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1298942 1298942 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1298949 1298949 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1307261 1307261 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C109:99 scaffold86 SAMTools SNP 1307654 1307654 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C112:99 scaffold86 SAMTools SNP 1307751 1307751 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C9.6e-05%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C225:44 scaffold86 SAMTools SNP 1307768 1307768 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0112%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.14%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold86 SAMTools SNP 1308181 1308181 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold86 SAMTools SNP 1309104 1309104 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0241%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D4.26%3BPV4%3D1%2C0.00058%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C37:28 scaffold86 SAMTools SNP 1309241 1309241 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C138:99 scaffold86 SAMTools SNP 1309711 1309711 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C9%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1309735 1309735 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1310002 1310002 192 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C18%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.0056%2C0.0092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold86 SAMTools SNP 1310083 1310083 67 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C6%2C11%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.46%2C2.1e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold86 SAMTools SNP 1310521 1310521 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C212:99 scaffold86 SAMTools SNP 1310987 1310987 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.64%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold86 SAMTools SNP 1311155 1311155 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C51%2C0:99 scaffold86 SAMTools SNP 1311229 1311229 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1311265 1311265 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold86 SAMTools SNP 1311574 1311574 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 1311610 1311610 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1311626 1311626 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C26:29 scaffold86 SAMTools SNP 1312493 1312493 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold86 SAMTools SNP 1317997 1317997 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold86 SAMTools SNP 1318291 1318291 52.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C18%2C0:33 scaffold86 SAMTools SNP 1318573 1318573 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold86 SAMTools SNP 1319001 1319001 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0123%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D-5.19%3BPV4%3D1%2C0.0099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C24:28 scaffold86 SAMTools SNP 1319377 1319377 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold86 SAMTools SNP 1322221 1322221 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 1329566 1329566 26 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.41%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold86 SAMTools SNP 1332566 1332566 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2277%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D211%2C1046%2C151%2C869%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C6.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1333711 1333711 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D620%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C154%2C45%2C299%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.5e-10%2C0.0091%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1336433 1336433 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C140:34 scaffold86 SAMTools SNP 1341950 1341950 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold86 SAMTools SNP 1344646 1344646 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold86 SAMTools SNP 1344665 1344665 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1351957 1351957 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C146:77 scaffold86 SAMTools SNP 1352004 1352004 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold86 SAMTools SNP 1353961 1353961 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold86 SAMTools SNP 1354142 1354142 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D46%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C21%2C0:39 scaffold86 SAMTools SNP 1362108 1362108 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.27%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold86 SAMTools SNP 1362388 1362388 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C11%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C7.7e-27%2C1%2C1.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1362409 1362409 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C36%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C169%2C0:99 scaffold86 SAMTools SNP 1362754 1362754 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C60%2C5%2C48%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.094%2C3.8e-95%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold86 SAMTools SNP 1363395 1363395 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C232:60 scaffold86 SAMTools SNP 1363464 1363464 82 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C6%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C172%2C0:99 scaffold86 SAMTools SNP 1363492 1363492 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C0%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold86 SAMTools SNP 1365940 1365940 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C11%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold86 SAMTools SNP 1366209 1366209 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold86 SAMTools SNP 1375822 1375822 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold86 SAMTools SNP 1375989 1375989 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1376827 1376827 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1377213 1377213 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1387290 1387290 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C8%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.082%2C4.7e-05%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold86 SAMTools SNP 1387336 1387336 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C0%2C18%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.25%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold86 SAMTools SNP 1388085 1388085 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C4%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.11%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold86 SAMTools SNP 1388086 1388086 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C14%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold86 SAMTools SNP 1388432 1388432 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C17%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold86 SAMTools SNP 1388837 1388837 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C1%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold86 SAMTools SNP 1388844 1388844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold86 SAMTools SNP 1388870 1388870 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C7%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold86 SAMTools SNP 1388969 1388969 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D27%2C12%2C0%2C6%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.0023%2C1.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold86 SAMTools SNP 1391015 1391015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold86 SAMTools SNP 1391481 1391481 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1391522 1391522 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C134:99 scaffold86 SAMTools SNP 1394957 1394957 116 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.53%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold86 SAMTools SNP 1395011 1395011 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.058%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold86 SAMTools SNP 1395267 1395267 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0205%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.071%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C236:31 scaffold86 SAMTools SNP 1399750 1399750 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C175:99 scaffold86 SAMTools SNP 1399763 1399763 219 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D1%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C228:99 scaffold86 SAMTools SNP 1402738 1402738 170 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold86 SAMTools SNP 1402810 1402810 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C25%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1403959 1403959 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1404623 1404623 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold86 SAMTools SNP 1404641 1404641 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C6%2C11%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C1.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold86 SAMTools SNP 1404686 1404686 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C1%2C11%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.2%2C1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold86 SAMTools SNP 1404749 1404749 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold86 SAMTools SNP 1405619 1405619 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.53%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold86 SAMTools SNP 1406026 1406026 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1406029 1406029 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1406050 1406050 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold86 SAMTools SNP 1406122 1406122 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C33%2C0:62 scaffold86 SAMTools SNP 1422470 1422470 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1422512 1422512 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold86 SAMTools SNP 1494790 1494790 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.33%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C83:40 scaffold86 SAMTools SNP 1495264 1495264 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold86 SAMTools SNP 1503970 1503970 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1549328 1549328 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1550081 1550081 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1550129 1550129 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1556571 1556571 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold86 SAMTools SNP 1561811 1561811 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold86 SAMTools SNP 1561896 1561896 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1562293 1562293 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold86 SAMTools SNP 1562410 1562410 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1562824 1562824 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1562876 1562876 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1562887 1562887 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1564055 1564055 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.061%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold86 SAMTools SNP 1565189 1565189 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C9%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold86 SAMTools SNP 1565929 1565929 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C21%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1566694 1566694 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1567466 1567466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C11%2C16%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.68%2C0.44%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C205:99 scaffold86 SAMTools SNP 1567523 1567523 134 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C34%2C0%2C13%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold86 SAMTools SNP 1567774 1567774 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C34%2C17%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.037%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1567804 1567804 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1568055 1568055 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C11%2C78%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1568200 1568200 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C19%2C37%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.31%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1569699 1569699 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold86 SAMTools SNP 1574010 1574010 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1583117 1583117 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold86 SAMTools SNP 1584033 1584033 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D31%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.54%2C0.0037%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold86 SAMTools SNP 1584060 1584060 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.48%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold86 SAMTools SNP 1584084 1584084 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C9%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1584461 1584461 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C0%2C9%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.079%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold86 SAMTools SNP 1590938 1590938 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold86 SAMTools SNP 1590971 1590971 74.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C21%2C0:39 scaffold86 SAMTools SNP 1591073 1591073 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C36%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold86 SAMTools SNP 1593580 1593580 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold86 SAMTools SNP 1607556 1607556 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold86 SAMTools SNP 1610087 1610087 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold86 SAMTools SNP 1630823 1630823 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C23:45 scaffold86 SAMTools SNP 1631063 1631063 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C69%2C3%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C217%2C0:99 scaffold86 SAMTools SNP 1631118 1631118 21.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C18%2C0:31 scaffold86 SAMTools SNP 1631899 1631899 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C29%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1631951 1631951 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C58%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1632174 1632174 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C8%2C39%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.018%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold86 SAMTools SNP 1632332 1632332 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold86 SAMTools SNP 1634911 1634911 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C32%2C20%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.00013%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold86 SAMTools SNP 1636077 1636077 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D101%2C38%2C89%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0066%2C0.0001%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1636109 1636109 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C81%2C36%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1636594 1636594 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C34%2C67%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.5%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1636621 1636621 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C26%2C62%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1641908 1641908 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold86 SAMTools SNP 1644535 1644535 56 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C106%2C0%2C46%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.021%2C8.1e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold86 SAMTools SNP 1644575 1644575 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C115%2C0%2C57%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1.4e-08%2C1%2C2.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold86 SAMTools SNP 1646598 1646598 4.75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold86 SAMTools SNP 1646792 1646792 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C215:57 scaffold86 SAMTools SNP 1646957 1646957 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C17%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C126%2C0:99 scaffold86 SAMTools SNP 1646983 1646983 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold86 SAMTools SNP 1647014 1647014 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C20%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold86 SAMTools SNP 1648396 1648396 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C4%2C15%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.031%2C0.11%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold86 SAMTools SNP 1649796 1649796 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C33%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold86 SAMTools SNP 1649812 1649812 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C31%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold86 SAMTools SNP 1649879 1649879 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C0.054%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold86 SAMTools SNP 1653103 1653103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1653131 1653131 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.51%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold86 SAMTools SNP 1654880 1654880 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold86 SAMTools SNP 1656841 1656841 107 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C18%2C0:33 scaffold86 SAMTools SNP 1656919 1656919 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold86 SAMTools SNP 1656931 1656931 152 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold86 SAMTools SNP 1658091 1658091 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold86 SAMTools SNP 1658103 1658103 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold86 SAMTools SNP 1658180 1658180 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold86 SAMTools SNP 1658202 1658202 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C5%2C13%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1658227 1658227 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1658560 1658560 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C0%2C27%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.0001%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold86 SAMTools SNP 1658563 1658563 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C0%2C32%3BMQ%3D50%3BFQ%3D224%3BPV4%3D7.4e-06%2C0.49%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold86 SAMTools SNP 1658987 1658987 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C9%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold86 SAMTools SNP 1659566 1659566 66 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C34%2C7%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.33%2C2.6e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold86 SAMTools SNP 1659659 1659659 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C47%2C52%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.6e-09%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1661063 1661063 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C17%2C71%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.49%2C1%2C0.0066;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1666668 1666668 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold86 SAMTools SNP 1668632 1668632 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold86 SAMTools SNP 1669920 1669920 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1682645 1682645 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold86 SAMTools SNP 1682989 1682989 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C10%2C16%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.49%2C2e-37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold86 SAMTools SNP 1685005 1685005 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold86 SAMTools SNP 1685011 1685011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold86 SAMTools SNP 1685017 1685017 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold86 SAMTools SNP 1685949 1685949 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C52%2C0%2C20%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.032%2C4.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold86 SAMTools SNP 1688416 1688416 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C24%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold86 SAMTools SNP 1690359 1690359 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold86 SAMTools SNP 1690418 1690418 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold86 SAMTools SNP 1692507 1692507 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C25%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.1%2C8.5e-37%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold86 SAMTools SNP 1695653 1695653 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C13%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1695971 1695971 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.21%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1695997 1695997 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C34%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold86 SAMTools SNP 1696349 1696349 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C12%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.48%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold86 SAMTools SNP 1696882 1696882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C12%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold866 SAMTools SNP 24995 24995 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold866 SAMTools SNP 25696 25696 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0007%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold866 SAMTools SNP 36160 36160 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold866 SAMTools SNP 36795 36795 61.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C12%2C0:21 scaffold866 SAMTools SNP 37342 37342 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold866 SAMTools SNP 43703 43703 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold866 SAMTools SNP 43732 43732 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold866 SAMTools SNP 43753 43753 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold866 SAMTools SNP 45022 45022 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C0.056%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C138:57 scaffold866 SAMTools SNP 45061 45061 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C8%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C6.7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C109:99 scaffold866 SAMTools SNP 45586 45586 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C157:99 scaffold866 SAMTools SNP 45830 45830 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold866 SAMTools SNP 46060 46060 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold866 SAMTools SNP 46160 46160 4.61 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold866 SAMTools SNP 68145 68145 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C176:79 scaffold866 SAMTools SNP 68167 68167 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.42%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C170:99 scaffold866 SAMTools SNP 68234 68234 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold866 SAMTools SNP 68944 68944 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C151:36 scaffold866 SAMTools SNP 69156 69156 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.26%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold866 SAMTools SNP 69157 69157 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold866 SAMTools SNP 69161 69161 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold866 SAMTools SNP 69559 69559 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold866 SAMTools SNP 90426 90426 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5012%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-5.47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C23:26 scaffold866 SAMTools SNP 90460 90460 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold866 SAMTools SNP 91414 91414 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold866 SAMTools SNP 106905 106905 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold866 SAMTools SNP 107074 107074 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 12029 12029 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold867 SAMTools SNP 12037 12037 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold867 SAMTools SNP 13184 13184 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C14%3BMQ%3D49%3BFQ%3D-19%3BPV4%3D0.23%2C2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C8:11 scaffold867 SAMTools SNP 17073 17073 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 17719 17719 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 17730 17730 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 77402 77402 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 79027 79027 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold867 SAMTools SNP 79066 79066 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 79380 79380 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 79387 79387 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 96245 96245 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.12%2C2.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold867 SAMTools SNP 96350 96350 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 98029 98029 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold867 SAMTools SNP 99068 99068 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C4%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold867 SAMTools SNP 99255 99255 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 99258 99258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold867 SAMTools SNP 99797 99797 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold867 SAMTools SNP 99815 99815 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C4%2C4%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold867 SAMTools SNP 99839 99839 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 101038 101038 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C7%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.00074%2C4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold867 SAMTools SNP 103116 103116 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold867 SAMTools SNP 104446 104446 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C3e-13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C186:30 scaffold867 SAMTools SNP 188610 188610 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 188874 188874 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 274536 274536 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold867 SAMTools SNP 274577 274577 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 274978 274978 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D3.49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C28:31 scaffold867 SAMTools SNP 275182 275182 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold867 SAMTools SNP 275304 275304 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 275339 275339 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold867 SAMTools SNP 275835 275835 29.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold867 SAMTools SNP 276013 276013 8.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold867 SAMTools SNP 292404 292404 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold867 SAMTools SNP 292430 292430 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold867 SAMTools SNP 293541 293541 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.62%2C0.026%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold867 SAMTools SNP 294573 294573 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C182:99 scaffold867 SAMTools SNP 295642 295642 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.61%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold867 SAMTools SNP 295684 295684 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold867 SAMTools SNP 297311 297311 17.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C226:50 scaffold867 SAMTools SNP 297314 297314 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold867 SAMTools SNP 298155 298155 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold867 SAMTools SNP 298779 298779 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.0077%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold867 SAMTools SNP 298794 298794 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold867 SAMTools SNP 299229 299229 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold867 SAMTools SNP 299265 299265 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold867 SAMTools SNP 305333 305333 150 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.3%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold867 SAMTools SNP 305393 305393 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C4%2C26%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C8.8e-23%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold867 SAMTools SNP 307126 307126 50.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C6%2C0:10 scaffold867 SAMTools SNP 308195 308195 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 309705 309705 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D589%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 309761 309761 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D382%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C350%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 309768 309768 185 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D530%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C310%2C2%2C120%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.12%2C1%2C1%2C6.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold867 SAMTools SNP 309780 309780 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D606%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C210%2C33%2C341%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C4.1e-11%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 310102 310102 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C121%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 310111 310111 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C12%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold867 SAMTools SNP 310267 310267 54.1 . . REF=G;ALT=A,T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C59%2C41%2C88%2C0%2C79:33 scaffold867 SAMTools SNP 310690 310690 39.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold867 SAMTools SNP 310772 310772 19.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold867 SAMTools SNP 310782 310782 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold867 SAMTools SNP 317722 317722 90 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C42%2C0:81 scaffold867 SAMTools SNP 317826 317826 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 317827 317827 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 326437 326437 99.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold867 SAMTools SNP 326473 326473 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 326497 326497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 333615 333615 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold867 SAMTools SNP 336448 336448 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold867 SAMTools SNP 337384 337384 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold867 SAMTools SNP 337899 337899 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold867 SAMTools SNP 337901 337901 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold867 SAMTools SNP 337941 337941 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 338289 338289 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C17%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.8e-05%2C1%2C1%2C7.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 347062 347062 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 370880 370880 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 387332 387332 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 387478 387478 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 412858 412858 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold867 SAMTools SNP 412870 412870 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold867 SAMTools SNP 412887 412887 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold867 SAMTools SNP 429912 429912 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C15%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.14%2C2.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold867 SAMTools SNP 432754 432754 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C2.3e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C194:99 scaffold867 SAMTools SNP 432780 432780 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C169:84 scaffold867 SAMTools SNP 433082 433082 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C36%2C0:69 scaffold867 SAMTools SNP 465652 465652 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 471843 471843 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C19%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C18%2C0:33 scaffold867 SAMTools SNP 473391 473391 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold867 SAMTools SNP 473412 473412 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 490542 490542 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 499330 499330 171 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C7%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.39%2C0.022%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold867 SAMTools SNP 499349 499349 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C97%2C2%2C14%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.24%2C8.4e-16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold867 SAMTools SNP 500447 500447 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold867 SAMTools SNP 500472 500472 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C218:68 scaffold867 SAMTools SNP 507095 507095 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 508735 508735 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 511171 511171 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.13%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C41:44 scaffold867 SAMTools SNP 517916 517916 28.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold867 SAMTools SNP 653945 653945 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold867 SAMTools SNP 687240 687240 12 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold867 SAMTools SNP 699923 699923 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold867 SAMTools SNP 700580 700580 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C3.4e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C152:51 scaffold867 SAMTools SNP 700655 700655 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 700658 700658 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 701595 701595 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 701978 701978 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold867 SAMTools SNP 702013 702013 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.22%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold867 SAMTools SNP 702083 702083 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C106:88 scaffold867 SAMTools SNP 702107 702107 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 705928 705928 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 706349 706349 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold867 SAMTools SNP 706387 706387 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C116:99 scaffold867 SAMTools SNP 706418 706418 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C158:85 scaffold867 SAMTools SNP 710614 710614 73 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C75%2C0:99 scaffold867 SAMTools SNP 710712 710712 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C72%2C0:99 scaffold867 SAMTools SNP 711449 711449 166 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C255%2C0:99 scaffold867 SAMTools SNP 711523 711523 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C0%2C53%2C44%3BMQ%3D50%3BFQ%3D204%3BPV4%3D2e-11%2C1.4e-08%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold867 SAMTools SNP 711866 711866 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D455%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C17%2C157%2C159%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 712338 712338 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C380%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 712394 712394 87 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D307%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C20%2C6%2C9%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.00067%2C0.31%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold867 SAMTools SNP 712481 712481 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D563%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C336%2C134%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 714691 714691 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1752%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C168%2C823%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 765422 765422 17.1 . . REF=G;ALT=C,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold867 SAMTools SNP 765925 765925 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 765958 765958 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 767186 767186 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold867 SAMTools SNP 767223 767223 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold867 SAMTools SNP 767229 767229 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 767554 767554 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 767593 767593 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 767612 767612 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 767946 767946 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 768015 768015 44.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold867 SAMTools SNP 770368 770368 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold867 SAMTools SNP 771612 771612 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold867 SAMTools SNP 772145 772145 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold867 SAMTools SNP 772179 772179 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 775911 775911 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold867 SAMTools SNP 777990 777990 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:160%2C21%2C0:39 scaffold867 SAMTools SNP 875798 875798 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D43%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C138:72 scaffold867 SAMTools SNP 875808 875808 71 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C1%3BMQ%3D45%3BFQ%3D74%3BPV4%3D1%2C0.093%2C0.45%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C154:99 scaffold867 SAMTools SNP 875826 875826 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C1%3BMQ%3D47%3BFQ%3D119%3BPV4%3D1%2C0.36%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C199:99 scaffold867 SAMTools SNP 876385 876385 199 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C30%2C0:57 scaffold867 SAMTools SNP 877778 877778 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold867 SAMTools SNP 878151 878151 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C4%2C0%3BMQ%3D49%3BFQ%3D61%3BPV4%3D0.55%2C1%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold867 SAMTools SNP 879903 879903 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 880079 880079 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C22%2C2%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 880115 880115 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold867 SAMTools SNP 880178 880178 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 880746 880746 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 880914 880914 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold867 SAMTools SNP 880915 880915 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold867 SAMTools SNP 880932 880932 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C32:35 scaffold867 SAMTools SNP 880947 880947 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold867 SAMTools SNP 886091 886091 44 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold867 SAMTools SNP 892292 892292 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C12%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold867 SAMTools SNP 892328 892328 98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C14%2C7%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.24%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold867 SAMTools SNP 892476 892476 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C14%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C0.004%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 892620 892620 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.013%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 893343 893343 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold867 SAMTools SNP 893637 893637 112 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold867 SAMTools SNP 893641 893641 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold867 SAMTools SNP 897739 897739 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C2%2C42%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 898433 898433 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 898454 898454 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C57%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold867 SAMTools SNP 898574 898574 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C34%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold867 SAMTools SNP 903466 903466 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C67%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold867 SAMTools SNP 903539 903539 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D14%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold867 SAMTools SNP 903542 903542 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold867 SAMTools SNP 904946 904946 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C12%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.43%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold867 SAMTools SNP 904961 904961 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C4%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold867 SAMTools SNP 905721 905721 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold867 SAMTools SNP 905757 905757 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold867 SAMTools SNP 907168 907168 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold867 SAMTools SNP 907600 907600 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.13%2C6.6e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C54:57 scaffold867 SAMTools SNP 913828 913828 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D41.4%3BPV4%3D0.1%2C0%2C1%2C0.00061;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C77:71 scaffold867 SAMTools SNP 913937 913937 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold867 SAMTools SNP 913982 913982 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold867 SAMTools SNP 917432 917432 39.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold867 SAMTools SNP 918233 918233 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold867 SAMTools SNP 918422 918422 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C3%2C11%3BMQ%3D50%3BFQ%3D190%3BPV4%3D1%2C0.44%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold867 SAMTools SNP 918443 918443 139 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold867 SAMTools SNP 918695 918695 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.24%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold867 SAMTools SNP 923248 923248 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C29%3BMQ%3D18%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C169%2C0:99 scaffold867 SAMTools SNP 952681 952681 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold867 SAMTools SNP 952714 952714 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold867 SAMTools SNP 953445 953445 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold867 SAMTools SNP 955550 955550 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 955560 955560 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 955915 955915 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold867 SAMTools SNP 956547 956547 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold867 SAMTools SNP 956610 956610 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold867 SAMTools SNP 957719 957719 192 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold867 SAMTools SNP 960372 960372 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D0.23%2C0.0023%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C253:89 scaffold867 SAMTools SNP 960382 960382 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.23%2C3.2e-05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold867 SAMTools SNP 960487 960487 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:248%2C21%2C0:39 scaffold867 SAMTools SNP 960862 960862 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold867 SAMTools SNP 960897 960897 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold867 SAMTools SNP 961940 961940 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C88:28 scaffold867 SAMTools SNP 962152 962152 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 962153 962153 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold867 SAMTools SNP 962215 962215 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 962226 962226 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 963006 963006 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D25%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C75%2C0:99 scaffold867 SAMTools SNP 963565 963565 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C23%2C0%2C7%3BMQ%3D43%3BFQ%3D40%3BPV4%3D0.078%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold867 SAMTools SNP 966683 966683 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:182%2C33%2C0:63 scaffold867 SAMTools SNP 967036 967036 32 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C46%2C37%2C65%2C0%2C59:16 scaffold867 SAMTools SNP 967038 967038 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C236:51 scaffold867 SAMTools SNP 967247 967247 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold867 SAMTools SNP 967248 967248 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold867 SAMTools SNP 967315 967315 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C21%2C8%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C1.1e-62%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold867 SAMTools SNP 967476 967476 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C51%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C163%2C0:99 scaffold867 SAMTools SNP 967752 967752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D234%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 968000 968000 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C91%2C43%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 968020 968020 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C130%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 968388 968388 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C66%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold867 SAMTools SNP 969906 969906 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C13%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.031%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 970976 970976 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold867 SAMTools SNP 971010 971010 79.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0009%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D0.19%2C0.015%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C2:5 scaffold867 SAMTools SNP 971127 971127 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C56%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold867 SAMTools SNP 971134 971134 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C53%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold867 SAMTools SNP 971678 971678 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.17%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold867 SAMTools SNP 971680 971680 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold867 SAMTools SNP 973851 973851 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C4%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold867 SAMTools SNP 973859 973859 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C14%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 977873 977873 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.2%2C0.0046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold867 SAMTools SNP 977964 977964 145 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C3e-33%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold867 SAMTools SNP 978284 978284 11.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold867 SAMTools SNP 978600 978600 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold867 SAMTools SNP 978620 978620 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 979133 979133 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold867 SAMTools SNP 982816 982816 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.00034%2C1%2C1%2C1.1e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold867 SAMTools SNP 982824 982824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C10%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold867 SAMTools SNP 983754 983754 55.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C15%2C0:27 scaffold867 SAMTools SNP 984917 984917 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C17%2C33%2C1%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.077%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold867 SAMTools SNP 985166 985166 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D161%2C94%2C193%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 985239 985239 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D485%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C284%2C173%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 985769 985769 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C231%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 987176 987176 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C20%2C23%3BMQ%3D50%3BFQ%3D-115%3BPV4%3D0.48%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C0:99 scaffold867 SAMTools SNP 987230 987230 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C22%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 987622 987622 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D318%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C41%2C101%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 987806 987806 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D275%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C84%2C36%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 987926 987926 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C55%2C51%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 988212 988212 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C34%2C52%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.9e-06%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 988394 988394 101 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C4%2C21%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.64%2C3.2e-06%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold867 SAMTools SNP 989217 989217 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 989241 989241 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold867 SAMTools SNP 989742 989742 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 989933 989933 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D171%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold867 SAMTools SNP 990480 990480 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C15%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C108%2C0:99 scaffold867 SAMTools SNP 991718 991718 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C117%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 997095 997095 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold867 SAMTools SNP 997155 997155 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 998057 998057 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C8%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C60:63 scaffold867 SAMTools SNP 998665 998665 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 999549 999549 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C42%2C0:81 scaffold867 SAMTools SNP 999657 999657 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold867 SAMTools SNP 999668 999668 101 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0369%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C35:38 scaffold867 SAMTools SNP 999678 999678 138 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C15%2C0:27 scaffold867 SAMTools SNP 999913 999913 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold867 SAMTools SNP 1000850 1000850 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C156:36 scaffold867 SAMTools SNP 1008087 1008087 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold867 SAMTools SNP 1011569 1011569 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D693%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C330%2C8%2C316%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00046%2C1.8e-38%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1011776 1011776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C54%2C380%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1012418 1012418 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1016531 1016531 27.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold867 SAMTools SNP 1018079 1018079 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1027936 1027936 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D109%2C105%2C143%2C109%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1029806 1029806 146 . . REF=C;ALT=T,G,A;FILTER=.;INFO=DP%3D351%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C87%2C42%2C156%2C0%2C150%2C187%2C40%2C116%2C184:87 scaffold867 SAMTools SNP 1030375 1030375 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C214%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1030378 1030378 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D291%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C133%2C13%2C89%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1030676 1030676 74.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D353%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold867 SAMTools SNP 1030793 1030793 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C1%2C36%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.45%2C9.7e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold867 SAMTools SNP 1031679 1031679 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1031686 1031686 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold867 SAMTools SNP 1037332 1037332 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C30%2C0:47 scaffold867 SAMTools SNP 1047703 1047703 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D14%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C42%2C0:57 scaffold867 SAMTools SNP 1052739 1052739 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C8%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold867 SAMTools SNP 1052885 1052885 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C12:15 scaffold867 SAMTools SNP 1053373 1053373 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold867 SAMTools SNP 1057728 1057728 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0096;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold867 SAMTools SNP 1058222 1058222 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.26%2C0.0075%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold867 SAMTools SNP 1058227 1058227 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C24%2C0%2C18%3BMQ%3D50%3BFQ%3D106%3BPV4%3D0.038%2C0.0054%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold867 SAMTools SNP 1058229 1058229 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C0%2C27%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.002%2C9.9e-08%2C1%2C4.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold867 SAMTools SNP 1058915 1058915 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C95%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1061401 1061401 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold867 SAMTools SNP 1062018 1062018 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C10%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.12%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1062939 1062939 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold867 SAMTools SNP 1062960 1062960 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C18%2C1%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.12%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold867 SAMTools SNP 1063159 1063159 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold867 SAMTools SNP 1064982 1064982 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold867 SAMTools SNP 1064987 1064987 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.18%2C0.0019%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold867 SAMTools SNP 1065170 1065170 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C9%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.11%2C3.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold867 SAMTools SNP 1065668 1065668 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.33%2C0.26%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold867 SAMTools SNP 1066484 1066484 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C6%2C15%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.15%2C3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold867 SAMTools SNP 1066577 1066577 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold867 SAMTools SNP 1066589 1066589 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold867 SAMTools SNP 1066934 1066934 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1066937 1066937 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C48%2C0:93 scaffold867 SAMTools SNP 1067084 1067084 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C8%2C11%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.58%2C2.4e-36%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold867 SAMTools SNP 1067222 1067222 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C13%2C5%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.44%2C2.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold867 SAMTools SNP 1067267 1067267 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C5.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold867 SAMTools SNP 1067414 1067414 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C0.092%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold867 SAMTools SNP 1067431 1067431 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C2%2C5%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold867 SAMTools SNP 1067688 1067688 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C26%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1068282 1068282 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C23%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.55%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold867 SAMTools SNP 1068349 1068349 136 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C0.28%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C198:99 scaffold867 SAMTools SNP 1068646 1068646 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold867 SAMTools SNP 1069940 1069940 71 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C10%2C9%2C13%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.38%2C6.1e-32%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold867 SAMTools SNP 1077218 1077218 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C3.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C93:46 scaffold867 SAMTools SNP 1077390 1077390 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1077398 1077398 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C76%2C8%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00052%2C0.082%2C1%2C0.00089;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1080708 1080708 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C28%2C8%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1080756 1080756 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C22%2C19%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1081039 1081039 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C9%2C3%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.12%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold867 SAMTools SNP 1081045 1081045 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1081620 1081620 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C19%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold867 SAMTools SNP 1081631 1081631 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C36%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold867 SAMTools SNP 1081658 1081658 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C48%2C0%2C10%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.58%2C0.0012%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold867 SAMTools SNP 1082067 1082067 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C26%2C7%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.00018%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold867 SAMTools SNP 1082103 1082103 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.00021%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C240:59 scaffold867 SAMTools SNP 1082466 1082466 59 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C1%2C5%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.0057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold867 SAMTools SNP 1082468 1082468 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C15%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold867 SAMTools SNP 1082540 1082540 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C27%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.28%2C2.4e-08%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold867 SAMTools SNP 1082688 1082688 123 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C26%2C22%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1.2e-08%2C6.3e-16%2C1%2C2.7e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold867 SAMTools SNP 1083347 1083347 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D56%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold867 SAMTools SNP 1084199 1084199 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold867 SAMTools SNP 1084243 1084243 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C234:65 scaffold867 SAMTools SNP 1084556 1084556 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C242:99 scaffold867 SAMTools SNP 1084607 1084607 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C3%2C16%2C1%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold867 SAMTools SNP 1084637 1084637 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0011%2C0.014%2C1%2C8.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold867 SAMTools SNP 1084734 1084734 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C22%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold867 SAMTools SNP 1085421 1085421 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C43%2C7%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1085463 1085463 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1085836 1085836 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C14%2C22%2C1%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.19%2C0.0086%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold867 SAMTools SNP 1088389 1088389 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C9%2C7%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.049%2C0.48%2C0.13%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold867 SAMTools SNP 1088676 1088676 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C46%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold867 SAMTools SNP 1088890 1088890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C40%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D0.37%2C0.26%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold867 SAMTools SNP 1089405 1089405 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C39%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold867 SAMTools SNP 1089425 1089425 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold867 SAMTools SNP 1091877 1091877 40.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C15%2C0:27 scaffold867 SAMTools SNP 1092004 1092004 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold867 SAMTools SNP 1092127 1092127 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1092934 1092934 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold867 SAMTools SNP 1092943 1092943 51.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C6%2C0:10 scaffold867 SAMTools SNP 1093303 1093303 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1093315 1093315 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1093533 1093533 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold867 SAMTools SNP 1094755 1094755 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold867 SAMTools SNP 1095302 1095302 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1123327 1123327 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold867 SAMTools SNP 1154229 1154229 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1154261 1154261 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C102%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1156628 1156628 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold867 SAMTools SNP 1157389 1157389 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C20%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold867 SAMTools SNP 1157807 1157807 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold867 SAMTools SNP 1157836 1157836 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold867 SAMTools SNP 1157841 1157841 148 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C154:99 scaffold867 SAMTools SNP 1158725 1158725 80 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C101%2C5%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C255%2C0:99 scaffold868 SAMTools SNP 687 687 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C0%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold868 SAMTools SNP 702 702 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C0%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold868 SAMTools SNP 2619 2619 21.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D23%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold868 SAMTools SNP 2661 2661 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C1%3BMQ%3D46%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold868 SAMTools SNP 2720 2720 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C8%3BMQ%3D43%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold868 SAMTools SNP 4063 4063 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C49%3BMQ%3D49%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold868 SAMTools SNP 4122 4122 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C76%3BMQ%3D49%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold868 SAMTools SNP 4361 4361 26 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C3%3BMQ%3D47%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C224:59 scaffold868 SAMTools SNP 4367 4367 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C80:36 scaffold868 SAMTools SNP 4379 4379 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold868 SAMTools SNP 4451 4451 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C118%2C132%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold868 SAMTools SNP 4463 4463 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C134%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold868 SAMTools SNP 11455 11455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold868 SAMTools SNP 11775 11775 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold868 SAMTools SNP 11790 11790 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C27%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C49%2C0:95 scaffold868 SAMTools SNP 12137 12137 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold868 SAMTools SNP 12517 12517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 12589 12589 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C18%2C0:33 scaffold868 SAMTools SNP 13177 13177 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold868 SAMTools SNP 13790 13790 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold868 SAMTools SNP 14727 14727 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold868 SAMTools SNP 14753 14753 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold868 SAMTools SNP 16107 16107 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold868 SAMTools SNP 16137 16137 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 16221 16221 20.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C18%2C0:31 scaffold868 SAMTools SNP 17206 17206 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold868 SAMTools SNP 17245 17245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold868 SAMTools SNP 17430 17430 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold868 SAMTools SNP 19025 19025 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold868 SAMTools SNP 19027 19027 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold868 SAMTools SNP 19081 19081 9.31 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold868 SAMTools SNP 19186 19186 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold868 SAMTools SNP 21163 21163 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold868 SAMTools SNP 25021 25021 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold868 SAMTools SNP 30697 30697 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 31390 31390 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold868 SAMTools SNP 31614 31614 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C71%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold868 SAMTools SNP 35850 35850 21.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold868 SAMTools SNP 39313 39313 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C38%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold868 SAMTools SNP 39401 39401 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C47%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C141%2C0:99 scaffold868 SAMTools SNP 45828 45828 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.005%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold868 SAMTools SNP 45868 45868 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold868 SAMTools SNP 53254 53254 109 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold868 SAMTools SNP 53300 53300 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 62132 62132 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold868 SAMTools SNP 62800 62800 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 63003 63003 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C39%2C41%3BMQ%3D50%3BFQ%3D-228%3BPV4%3D0.49%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C201%2C0:99 scaffold868 SAMTools SNP 69838 69838 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold868 SAMTools SNP 73183 73183 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold868 SAMTools SNP 76620 76620 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C13%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:187%2C111%2C0:99 scaffold868 SAMTools SNP 76753 76753 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold868 SAMTools SNP 77299 77299 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold868 SAMTools SNP 77313 77313 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold87 SAMTools SNP 34898 34898 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold87 SAMTools SNP 34910 34910 17.1 . . REF=G;ALT=T,C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold87 SAMTools SNP 34925 34925 28 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D0.33%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold87 SAMTools SNP 105148 105148 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold87 SAMTools SNP 105169 105169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C20%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.013%2C0.25%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C126:99 scaffold87 SAMTools SNP 105346 105346 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C18%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C233:99 scaffold87 SAMTools SNP 106113 106113 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C36%2C0:59 scaffold87 SAMTools SNP 106176 106176 19 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C9%2C0:15 scaffold87 SAMTools SNP 132689 132689 26.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C21%2C0:38 scaffold870 SAMTools SNP 851 851 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 1620 1620 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold870 SAMTools SNP 2116 2116 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 2154 2154 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold870 SAMTools SNP 2961 2961 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C84:87 scaffold870 SAMTools SNP 4412 4412 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 5942 5942 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold870 SAMTools SNP 7844 7844 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold870 SAMTools SNP 7855 7855 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold870 SAMTools SNP 11865 11865 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.3%2C0.0052%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold870 SAMTools SNP 11946 11946 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold870 SAMTools SNP 12758 12758 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold870 SAMTools SNP 12769 12769 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold870 SAMTools SNP 16300 16300 201 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C15%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.26%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C42:45 scaffold870 SAMTools SNP 16382 16382 74 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C24%2C0:45 scaffold870 SAMTools SNP 16501 16501 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C48%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold870 SAMTools SNP 19485 19485 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C1%2C37%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.22%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold870 SAMTools SNP 19518 19518 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 20128 20128 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.19%2C0.019%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold870 SAMTools SNP 21181 21181 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C13%2C2%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.00054%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold870 SAMTools SNP 21546 21546 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C11%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.026%2C5.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold870 SAMTools SNP 22590 22590 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.039%2C0.039%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C234:99 scaffold870 SAMTools SNP 23186 23186 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C4%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.25%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 23196 23196 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C13%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 23741 23741 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 23755 23755 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C5%2C14%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.73%2C5.7e-11%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold870 SAMTools SNP 24718 24718 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 27412 27412 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold870 SAMTools SNP 28038 28038 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold870 SAMTools SNP 28099 28099 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C0.38%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold870 SAMTools SNP 32396 32396 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 38242 38242 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 38735 38735 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 38742 38742 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 41001 41001 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold870 SAMTools SNP 41580 41580 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold870 SAMTools SNP 42157 42157 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold870 SAMTools SNP 47464 47464 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold870 SAMTools SNP 47488 47488 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C73:76 scaffold870 SAMTools SNP 47572 47572 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold870 SAMTools SNP 47825 47825 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold870 SAMTools SNP 47846 47846 81 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.18%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C224:99 scaffold870 SAMTools SNP 48266 48266 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold870 SAMTools SNP 48628 48628 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold870 SAMTools SNP 48857 48857 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold870 SAMTools SNP 48866 48866 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold870 SAMTools SNP 48881 48881 52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold870 SAMTools SNP 48985 48985 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 48989 48989 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 49167 49167 112 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.56%2C0.35%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold870 SAMTools SNP 49185 49185 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.052%2C1%2C8.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold870 SAMTools SNP 49200 49200 85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D88%3BPV4%3D2.9e-05%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold870 SAMTools SNP 49236 49236 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C1%2C11%3BMQ%3D50%3BFQ%3D197%3BPV4%3D5.9e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold870 SAMTools SNP 49918 49918 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 49954 49954 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold870 SAMTools SNP 51110 51110 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold870 SAMTools SNP 52683 52683 151 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C36%2C0%2C179%2C20%2C176:69 scaffold870 SAMTools SNP 59277 59277 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 75339 75339 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 77222 77222 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 77256 77256 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 79528 79528 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold870 SAMTools SNP 80887 80887 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 82471 82471 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 85778 85778 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold870 SAMTools SNP 143272 143272 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold870 SAMTools SNP 143744 143744 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold870 SAMTools SNP 143807 143807 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0077%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C41:44 scaffold870 SAMTools SNP 143987 143987 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.00071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold870 SAMTools SNP 145444 145444 159 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C63%2C246%2C0%2C240:45 scaffold870 SAMTools SNP 147782 147782 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C0.25%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold870 SAMTools SNP 150054 150054 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 152548 152548 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 153260 153260 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold870 SAMTools SNP 153389 153389 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold870 SAMTools SNP 153822 153822 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold870 SAMTools SNP 164737 164737 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D39.3%3BPV4%3D1%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C71:69 scaffold870 SAMTools SNP 165338 165338 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold870 SAMTools SNP 169227 169227 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold870 SAMTools SNP 169841 169841 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold870 SAMTools SNP 170394 170394 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 170412 170412 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold870 SAMTools SNP 170424 170424 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold870 SAMTools SNP 171025 171025 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C38:41 scaffold870 SAMTools SNP 171034 171034 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0.033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold870 SAMTools SNP 171772 171772 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold870 SAMTools SNP 171775 171775 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold870 SAMTools SNP 172048 172048 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold870 SAMTools SNP 175895 175895 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 175928 175928 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold870 SAMTools SNP 178624 178624 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold870 SAMTools SNP 179200 179200 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C22%3BMQ%3D49%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold870 SAMTools SNP 180715 180715 4.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C9%2C0:8 scaffold870 SAMTools SNP 181473 181473 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D177%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C5%2C90%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.59%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold870 SAMTools SNP 182099 182099 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C147%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold873 SAMTools SNP 268 268 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 445 445 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold873 SAMTools SNP 487 487 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C231:99 scaffold873 SAMTools SNP 490 490 138 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C1%3BMQ%3D49%3BFQ%3D141%3BPV4%3D0.26%2C0.14%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C240:99 scaffold873 SAMTools SNP 1552 1552 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold873 SAMTools SNP 1564 1564 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.089%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold873 SAMTools SNP 2759 2759 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 6879 6879 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C52%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold873 SAMTools SNP 6891 6891 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C4%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 7810 7810 97 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.29%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold873 SAMTools SNP 9617 9617 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 9671 9671 26 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.0035%2C0.23%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C214:59 scaffold873 SAMTools SNP 11166 11166 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C8%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold873 SAMTools SNP 11250 11250 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.012%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 15526 15526 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 17996 17996 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C0.008;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold873 SAMTools SNP 17997 17997 55 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.077%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold873 SAMTools SNP 18509 18509 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C46%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C216:99 scaffold873 SAMTools SNP 18559 18559 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C2%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0045%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold873 SAMTools SNP 19490 19490 41.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold873 SAMTools SNP 20179 20179 133 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:166%2C21%2C0:39 scaffold873 SAMTools SNP 20231 20231 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold873 SAMTools SNP 29190 29190 168 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C22%2C42%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D1.5e-07%2C4.3e-08%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold873 SAMTools SNP 29193 29193 77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C22%2C25%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D2.1e-05%2C1.6e-09%2C1%2C5.7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold873 SAMTools SNP 29312 29312 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C47%2C7%3BMQ%3D35%3BFQ%3D176%3BPV4%3D3.3e-09%2C1%2C2.3e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C203:99 scaffold873 SAMTools SNP 29927 29927 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C36%2C0:69 scaffold873 SAMTools SNP 30067 30067 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C42%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C135%2C0:99 scaffold873 SAMTools SNP 30235 30235 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C66%2C0:99 scaffold873 SAMTools SNP 30250 30250 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold873 SAMTools SNP 30262 30262 73.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C21%2C0:39 scaffold873 SAMTools SNP 44187 44187 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold873 SAMTools SNP 44198 44198 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C0.11%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold873 SAMTools SNP 45153 45153 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 46933 46933 30 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C0.24%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold873 SAMTools SNP 47223 47223 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 50622 50622 68.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C21%2C0:39 scaffold873 SAMTools SNP 58745 58745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 58760 58760 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold873 SAMTools SNP 59016 59016 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D65.5%3BPV4%3D0.37%2C0.13%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C102:95 scaffold873 SAMTools SNP 59435 59435 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold873 SAMTools SNP 59456 59456 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold873 SAMTools SNP 60684 60684 193 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.23%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C76:79 scaffold873 SAMTools SNP 60913 60913 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C11%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.27%2C0.45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C58:61 scaffold873 SAMTools SNP 60919 60919 22 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold873 SAMTools SNP 61006 61006 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold873 SAMTools SNP 61323 61323 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 64775 64775 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold873 SAMTools SNP 64851 64851 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C119:99 scaffold873 SAMTools SNP 65245 65245 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold873 SAMTools SNP 66216 66216 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold873 SAMTools SNP 66514 66514 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold873 SAMTools SNP 66665 66665 85 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C228:99 scaffold873 SAMTools SNP 66692 66692 163 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C0.29%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C132:99 scaffold873 SAMTools SNP 66699 66699 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold873 SAMTools SNP 66783 66783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C9%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold873 SAMTools SNP 67337 67337 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C66:69 scaffold873 SAMTools SNP 67338 67338 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C179:46 scaffold873 SAMTools SNP 67360 67360 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C0.44%2C1%2C0.004;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold873 SAMTools SNP 67674 67674 52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C128:85 scaffold873 SAMTools SNP 67833 67833 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold873 SAMTools SNP 67951 67951 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold873 SAMTools SNP 67989 67989 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.43%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold873 SAMTools SNP 68508 68508 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 68675 68675 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold873 SAMTools SNP 68714 68714 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold873 SAMTools SNP 68851 68851 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 68869 68869 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold873 SAMTools SNP 68953 68953 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold873 SAMTools SNP 68961 68961 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 69497 69497 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.26%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C126:71 scaffold873 SAMTools SNP 69636 69636 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold873 SAMTools SNP 69693 69693 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 70797 70797 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold873 SAMTools SNP 70801 70801 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.02%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold873 SAMTools SNP 71867 71867 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold873 SAMTools SNP 71949 71949 51.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold873 SAMTools SNP 71969 71969 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold873 SAMTools SNP 72799 72799 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold873 SAMTools SNP 72805 72805 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold873 SAMTools SNP 73840 73840 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold873 SAMTools SNP 73903 73903 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold873 SAMTools SNP 73954 73954 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.35%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C67:70 scaffold873 SAMTools SNP 73963 73963 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.067%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C184:99 scaffold873 SAMTools SNP 74609 74609 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C74:77 scaffold873 SAMTools SNP 74702 74702 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C186:99 scaffold873 SAMTools SNP 75822 75822 15.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-6.98%3BPV4%3D0.25%2C0.059%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C21:24 scaffold873 SAMTools SNP 81586 81586 77.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C15%2C0:27 scaffold873 SAMTools SNP 82141 82141 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold873 SAMTools SNP 82177 82177 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C1%2C18%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1.5e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold873 SAMTools SNP 119773 119773 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold873 SAMTools SNP 119779 119779 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold873 SAMTools SNP 120179 120179 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 120188 120188 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.1%2C0.0009%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C77:53 scaffold873 SAMTools SNP 124669 124669 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold873 SAMTools SNP 124675 124675 60 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold873 SAMTools SNP 126986 126986 186 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C18%2C0:33 scaffold873 SAMTools SNP 127270 127270 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C41%3BMQ%3D49%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold873 SAMTools SNP 129298 129298 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D43%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold873 SAMTools SNP 129304 129304 171 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold873 SAMTools SNP 129313 129313 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D43%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C24%2C0:45 scaffold873 SAMTools SNP 129489 129489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D35%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold873 SAMTools SNP 129510 129510 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C7%3BMQ%3D35%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold873 SAMTools SNP 130005 130005 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D26%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C54%2C0:99 scaffold873 SAMTools SNP 131206 131206 21.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold873 SAMTools SNP 137902 137902 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 138064 138064 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold873 SAMTools SNP 138831 138831 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 138843 138843 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 139410 139410 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 140194 140194 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold873 SAMTools SNP 140202 140202 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold873 SAMTools SNP 141612 141612 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold873 SAMTools SNP 141659 141659 10.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold873 SAMTools SNP 142863 142863 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C29%2C1%2C51%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.072%2C1%2C0.32%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 143082 143082 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C0%2C47%3BMQ%3D47%3BFQ%3D224%3BPV4%3D0.03%2C1%2C0.38%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold873 SAMTools SNP 143336 143336 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.27%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold873 SAMTools SNP 143387 143387 35 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C2%2C1%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.27%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold873 SAMTools SNP 143685 143685 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C3%2C2%3BMQ%3D45%3BFQ%3D32%3BPV4%3D1%2C0.47%2C0.074%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold873 SAMTools SNP 143700 143700 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C5%3BMQ%3D46%3BFQ%3D225%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 143724 143724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C9%2C4%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 143756 143756 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C10%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold873 SAMTools SNP 143883 143883 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D42%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold873 SAMTools SNP 143897 143897 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C6%3BMQ%3D42%3BFQ%3D33%3BPV4%3D0.5%2C0.25%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C60:63 scaffold873 SAMTools SNP 145773 145773 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C10%3BMQ%3D42%3BFQ%3D165%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C192:99 scaffold873 SAMTools SNP 145776 145776 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C8%3BMQ%3D42%3BFQ%3D141%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C227:99 scaffold873 SAMTools SNP 151723 151723 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 151740 151740 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 151856 151856 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold873 SAMTools SNP 151910 151910 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold873 SAMTools SNP 152400 152400 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold873 SAMTools SNP 153219 153219 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C235:31 scaffold873 SAMTools SNP 153351 153351 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.58%2C0.3%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C174:99 scaffold873 SAMTools SNP 154052 154052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 154058 154058 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 169164 169164 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold873 SAMTools SNP 183148 183148 218 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D48%3BFQ%3D-55%3BPV4%3D1%2C0.22%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C28%2C0:53 scaffold873 SAMTools SNP 183154 183154 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C11%3BMQ%3D48%3BFQ%3D-14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C13:16 scaffold873 SAMTools SNP 186825 186825 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 187018 187018 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold873 SAMTools SNP 213474 213474 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold873 SAMTools SNP 255180 255180 9.53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold873 SAMTools SNP 270367 270367 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold873 SAMTools SNP 279568 279568 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C124:87 scaffold873 SAMTools SNP 281169 281169 94 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold873 SAMTools SNP 281218 281218 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold873 SAMTools SNP 281235 281235 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold873 SAMTools SNP 289887 289887 28.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold873 SAMTools SNP 290037 290037 206 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C0%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C93%2C0:99 scaffold873 SAMTools SNP 290145 290145 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C2%2C15%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.66%2C7.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold873 SAMTools SNP 290553 290553 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C234:99 scaffold873 SAMTools SNP 290576 290576 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.039%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold873 SAMTools SNP 290614 290614 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold873 SAMTools SNP 290620 290620 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C195:99 scaffold873 SAMTools SNP 291960 291960 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.0088%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C132:74 scaffold873 SAMTools SNP 291975 291975 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C24%2C0:45 scaffold873 SAMTools SNP 291993 291993 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 293007 293007 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold873 SAMTools SNP 293009 293009 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold873 SAMTools SNP 293196 293196 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold873 SAMTools SNP 293657 293657 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold873 SAMTools SNP 293658 293658 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold873 SAMTools SNP 294026 294026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C19%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold873 SAMTools SNP 294136 294136 56 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C42%2C0:81 scaffold873 SAMTools SNP 294837 294837 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold873 SAMTools SNP 294849 294849 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C115:40 scaffold873 SAMTools SNP 294886 294886 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold873 SAMTools SNP 295866 295866 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C38:41 scaffold873 SAMTools SNP 296040 296040 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold873 SAMTools SNP 296317 296317 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.4%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C118:79 scaffold873 SAMTools SNP 299306 299306 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold873 SAMTools SNP 299324 299324 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold873 SAMTools SNP 299381 299381 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold873 SAMTools SNP 309525 309525 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 311544 311544 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold873 SAMTools SNP 312054 312054 78 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.082%2C0.42%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold873 SAMTools SNP 312739 312739 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold873 SAMTools SNP 312750 312750 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 313131 313131 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold873 SAMTools SNP 313563 313563 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold873 SAMTools SNP 320862 320862 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 321584 321584 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C3.8e-16%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C150:44 scaffold873 SAMTools SNP 322053 322053 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D9.05%3BPV4%3D1%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C38:38 scaffold873 SAMTools SNP 322139 322139 20 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold873 SAMTools SNP 322556 322556 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C4.2e-06%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C107:40 scaffold873 SAMTools SNP 327216 327216 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold873 SAMTools SNP 327829 327829 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C8%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold873 SAMTools SNP 328492 328492 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0047%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold873 SAMTools SNP 328850 328850 92 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0078%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C0.32%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C193:99 scaffold873 SAMTools SNP 330219 330219 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C128:28 scaffold873 SAMTools SNP 330296 330296 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold873 SAMTools SNP 333448 333448 19.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C15%2C0:26 scaffold873 SAMTools SNP 333730 333730 4.11 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold873 SAMTools SNP 339740 339740 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 351444 351444 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold873 SAMTools SNP 352102 352102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D421%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C410%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold873 SAMTools SNP 352186 352186 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold873 SAMTools SNP 352358 352358 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D115%2C7%2C90%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold873 SAMTools SNP 352710 352710 76 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C21:24 scaffold873 SAMTools SNP 359375 359375 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C1%2C74%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.44%2C1.2e-39%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold873 SAMTools SNP 359873 359873 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold873 SAMTools SNP 361635 361635 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C12%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.014%2C0.25%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold873 SAMTools SNP 361659 361659 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold873 SAMTools SNP 371554 371554 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0:16 scaffold873 SAMTools SNP 379896 379896 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C0.00019%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C35:36 scaffold873 SAMTools SNP 380259 380259 4.77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.035%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold873 SAMTools SNP 385483 385483 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold879 SAMTools SNP 88682 88682 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 88695 88695 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 88903 88903 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 88942 88942 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold879 SAMTools SNP 89141 89141 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0114%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold879 SAMTools SNP 89177 89177 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold879 SAMTools SNP 89750 89750 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold879 SAMTools SNP 89936 89936 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold879 SAMTools SNP 90038 90038 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 90222 90222 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 90630 90630 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold879 SAMTools SNP 91982 91982 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold879 SAMTools SNP 92054 92054 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold879 SAMTools SNP 92065 92065 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D38.8%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C66:69 scaffold879 SAMTools SNP 92340 92340 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold879 SAMTools SNP 92361 92361 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold88 SAMTools SNP 967 967 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.2%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C38:41 scaffold88 SAMTools SNP 2687 2687 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold88 SAMTools SNP 50481 50481 141 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C171:99 scaffold88 SAMTools SNP 50843 50843 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.21%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C179:99 scaffold88 SAMTools SNP 51165 51165 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold88 SAMTools SNP 51796 51796 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold88 SAMTools SNP 52050 52050 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold88 SAMTools SNP 52138 52138 35 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C53%2C0%2C23%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.01%2C9.9e-15%2C1%2C6.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold88 SAMTools SNP 52538 52538 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold88 SAMTools SNP 52583 52583 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.6e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C119:70 scaffold88 SAMTools SNP 55226 55226 207 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.43%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold88 SAMTools SNP 55253 55253 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.55%2C0.3%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold88 SAMTools SNP 56012 56012 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.29%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 56624 56624 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C10%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 56772 56772 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C29%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold88 SAMTools SNP 57001 57001 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C20%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.5%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 57204 57204 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 88890 88890 86.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C12%2C0:21 scaffold88 SAMTools SNP 106042 106042 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold88 SAMTools SNP 106065 106065 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold88 SAMTools SNP 106068 106068 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C157:36 scaffold88 SAMTools SNP 106633 106633 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C22%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0045%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold88 SAMTools SNP 134769 134769 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold88 SAMTools SNP 134974 134974 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold88 SAMTools SNP 208114 208114 21 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.18%2C0.027%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold88 SAMTools SNP 208143 208143 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold88 SAMTools SNP 208694 208694 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold88 SAMTools SNP 208703 208703 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold88 SAMTools SNP 242447 242447 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold88 SAMTools SNP 242468 242468 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold88 SAMTools SNP 242513 242513 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold88 SAMTools SNP 243021 243021 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold88 SAMTools SNP 243022 243022 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold88 SAMTools SNP 244692 244692 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C3%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold88 SAMTools SNP 245440 245440 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C5%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.029%2C0.27%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 245473 245473 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C8%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.38%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C204:99 scaffold88 SAMTools SNP 247317 247317 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold88 SAMTools SNP 259107 259107 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C59%2C15%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D4.3e-10%2C1.2e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold88 SAMTools SNP 259127 259127 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C9%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.016%2C9.6e-06%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold88 SAMTools SNP 259857 259857 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C17%2C35%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold88 SAMTools SNP 259884 259884 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C7%2C24%2C1%3BMQ%3D46%3BFQ%3D194%3BPV4%3D0.42%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold88 SAMTools SNP 263129 263129 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C0%2C4%3BMQ%3D40%3BFQ%3D22%3BPV4%3D0.51%2C0.04%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C180:52 scaffold88 SAMTools SNP 263143 263143 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C8%3BMQ%3D40%3BFQ%3D95%3BPV4%3D1%2C1%2C0.2%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C122:99 scaffold88 SAMTools SNP 263364 263364 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold88 SAMTools SNP 265712 265712 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D34.9%3BPV4%3D1%2C0.00077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C80:65 scaffold88 SAMTools SNP 265834 265834 156 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C21%2C0:39 scaffold88 SAMTools SNP 265916 265916 106 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C73:76 scaffold880 SAMTools SNP 5177 5177 9.93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D0.8294%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D25%3BFQ%3D-26%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C1:5 scaffold880 SAMTools SNP 6812 6812 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D45%3BFQ%3D4.44%3BPV4%3D1%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C39:28 scaffold880 SAMTools SNP 10132 10132 54.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D29%3BFQ%3D-28%3BPV4%3D0.33%2C0.42%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C1%2C0:4 scaffold880 SAMTools SNP 10495 10495 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold880 SAMTools SNP 11262 11262 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C13%2C30%3BMQ%3D40%3BFQ%3D169%3BPV4%3D0.11%2C1%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C196:99 scaffold880 SAMTools SNP 11754 11754 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C6%2C18%3BMQ%3D40%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 12077 12077 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C6%2C9%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.5%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 12110 12110 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 12414 12414 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C6%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 12444 12444 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold880 SAMTools SNP 12923 12923 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C49%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 13237 13237 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.088%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 13825 13825 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.57%2C0.0057%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C214:99 scaffold880 SAMTools SNP 15097 15097 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold880 SAMTools SNP 16239 16239 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C72%2C0:99 scaffold880 SAMTools SNP 16388 16388 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 17615 17615 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C8%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold880 SAMTools SNP 17715 17715 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold880 SAMTools SNP 18897 18897 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C224:99 scaffold880 SAMTools SNP 18957 18957 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold880 SAMTools SNP 18981 18981 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold880 SAMTools SNP 20247 20247 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold880 SAMTools SNP 20285 20285 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold880 SAMTools SNP 20640 20640 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold880 SAMTools SNP 20663 20663 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold880 SAMTools SNP 21304 21304 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold880 SAMTools SNP 21362 21362 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold880 SAMTools SNP 24056 24056 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold880 SAMTools SNP 24380 24380 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold880 SAMTools SNP 34385 34385 98.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold880 SAMTools SNP 39362 39362 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C39%2C0:75 scaffold880 SAMTools SNP 44960 44960 3.41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold880 SAMTools SNP 45391 45391 8.75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold880 SAMTools SNP 45993 45993 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold880 SAMTools SNP 50480 50480 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C13%3BMQ%3D50%3BFQ%3D103%3BPV4%3D1%2C1.5e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold880 SAMTools SNP 50921 50921 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold880 SAMTools SNP 50922 50922 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold880 SAMTools SNP 51013 51013 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C20%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold880 SAMTools SNP 51318 51318 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C11%2C10%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.0049%2C0.17%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C193:99 scaffold880 SAMTools SNP 51375 51375 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold880 SAMTools SNP 51381 51381 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold880 SAMTools SNP 51636 51636 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold880 SAMTools SNP 51686 51686 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 51774 51774 198 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold880 SAMTools SNP 54008 54008 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold880 SAMTools SNP 55464 55464 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 56942 56942 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C18%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold880 SAMTools SNP 57068 57068 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C6%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C0.1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold880 SAMTools SNP 57502 57502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C26%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.028%2C0.0098%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 59913 59913 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C15%2C13%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1%2C0.056%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 59948 59948 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C46%2C30%3BMQ%3D49%3BFQ%3D-209%3BPV4%3D1%2C0.18%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C182%2C0:99 scaffold880 SAMTools SNP 60802 60802 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold880 SAMTools SNP 62765 62765 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C116%2C47%3BMQ%3D47%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 62848 62848 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C11%2C47%3BMQ%3D50%3BFQ%3D-155%3BPV4%3D1%2C1%2C0.45%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C128%2C0:99 scaffold880 SAMTools SNP 63017 63017 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C50%3BMQ%3D48%3BFQ%3D-233%3BPV4%3D1%2C0.25%2C0.37%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C0:99 scaffold880 SAMTools SNP 63378 63378 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold880 SAMTools SNP 63627 63627 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C42%2C6%2C38%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.43%2C5.5e-06%2C0.0017%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 64185 64185 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C45%2C0:87 scaffold880 SAMTools SNP 65710 65710 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C104:85 scaffold880 SAMTools SNP 67849 67849 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C2%2C96%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C3.5e-195%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold880 SAMTools SNP 67961 67961 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C100%2C7%2C117%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 68427 68427 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D129%2C17%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.5e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 68548 68548 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D501%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C113%2C99%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 69166 69166 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold880 SAMTools SNP 69210 69210 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 69546 69546 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C25%2C0:47 scaffold880 SAMTools SNP 69755 69755 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold880 SAMTools SNP 71647 71647 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C160:53 scaffold880 SAMTools SNP 72508 72508 73.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold880 SAMTools SNP 75703 75703 64.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C18%2C0:33 scaffold880 SAMTools SNP 76318 76318 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C20%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C102%2C0:99 scaffold880 SAMTools SNP 76655 76655 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.082%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold880 SAMTools SNP 81594 81594 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold880 SAMTools SNP 81811 81811 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C8%2C0%2C7%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.01%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold880 SAMTools SNP 82136 82136 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold880 SAMTools SNP 84062 84062 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold880 SAMTools SNP 84063 84063 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold880 SAMTools SNP 84094 84094 195 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C0%2C19%3BMQ%3D50%3BFQ%3D198%3BPV4%3D3.3e-05%2C0.035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold880 SAMTools SNP 84136 84136 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.009%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C232:99 scaffold880 SAMTools SNP 84246 84246 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D193%3BPV4%3D4.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold880 SAMTools SNP 84310 84310 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0183%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.15%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C222:31 scaffold880 SAMTools SNP 89596 89596 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 91381 91381 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 97588 97588 55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0101%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.3%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold880 SAMTools SNP 98873 98873 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 106044 106044 84 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold880 SAMTools SNP 106065 106065 155 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C150:99 scaffold880 SAMTools SNP 106513 106513 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold880 SAMTools SNP 106525 106525 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 107083 107083 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C13%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 107974 107974 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C17%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold880 SAMTools SNP 108950 108950 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C11%3BMQ%3D44%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold880 SAMTools SNP 108956 108956 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C14%2C3%3BMQ%3D41%3BFQ%3D223%3BPV4%3D0.46%2C0.48%2C0.13%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold880 SAMTools SNP 109518 109518 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C21%2C11%2C20%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 109572 109572 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C13%2C6%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 110386 110386 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C11%2C37%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 110668 110668 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C7%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.26%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 110686 110686 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C23%2C1%2C23%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D3.8e-11%2C4.7e-21%2C1%2C5.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold880 SAMTools SNP 111223 111223 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C68%2C1%2C47%3BMQ%3D50%3BFQ%3D137%3BPV4%3D3e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold880 SAMTools SNP 111244 111244 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C38%2C72%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 111322 111322 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C37%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold880 SAMTools SNP 111337 111337 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C103%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 112052 112052 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C25%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold880 SAMTools SNP 112641 112641 9.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.0065%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold880 SAMTools SNP 112664 112664 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C15%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C8.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C76:79 scaffold880 SAMTools SNP 114725 114725 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold880 SAMTools SNP 114732 114732 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C2%2C0%2C10%3BMQ%3D50%3BFQ%3D21%3BPV4%3D5e-07%2C5.2e-21%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold880 SAMTools SNP 114954 114954 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold880 SAMTools SNP 115549 115549 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold880 SAMTools SNP 117970 117970 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 117999 117999 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.22%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold880 SAMTools SNP 118589 118589 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C214:99 scaffold880 SAMTools SNP 118617 118617 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold880 SAMTools SNP 119685 119685 76 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C52%2C1%2C8%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold880 SAMTools SNP 119709 119709 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C54%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold880 SAMTools SNP 119736 119736 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C56%2C47%3BMQ%3D50%3BFQ%3D-222%3BPV4%3D0.25%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C195%2C0:99 scaffold880 SAMTools SNP 119833 119833 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C30%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold880 SAMTools SNP 119865 119865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C190%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 121027 121027 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D470%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D140%2C115%2C132%2C83%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 123434 123434 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D371%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D167%2C26%2C142%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.2e-07%2C0.22%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 123500 123500 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C151%2C33%2C148%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.072%2C1.7e-138%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 123596 123596 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C57%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold880 SAMTools SNP 123614 123614 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C8%3BMQ%3D43%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 124049 124049 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1977%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1225%2C126%2C623%2C3%3BMQ%3D47%3BFQ%3D190%3BPV4%3D4.1e-18%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold880 SAMTools SNP 124076 124076 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1974%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1155%2C164%2C650%2C5%3BMQ%3D48%3BFQ%3D180%3BPV4%3D5.6e-24%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold880 SAMTools SNP 126276 126276 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C11%2C5%3BMQ%3D21%3BFQ%3D-59%3BPV4%3D1%2C0.13%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C32%2C0:61 scaffold880 SAMTools SNP 126294 126294 8.75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C1%2C2%2C1%3BMQ%3D18%3BFQ%3D-28%3BPV4%3D1%2C0.049%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C1%2C0:3 scaffold880 SAMTools SNP 126518 126518 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C25%3BMQ%3D22%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C196%2C0:99 scaffold880 SAMTools SNP 126578 126578 59 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D21%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C33%2C0:63 scaffold880 SAMTools SNP 127155 127155 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D413%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C405%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 127227 127227 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D280%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C64%2C195%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 127281 127281 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C358%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 127419 127419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C109%2C13%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.074%2C0.018%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C115:99 scaffold880 SAMTools SNP 127927 127927 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D241%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C71%2C159%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D4.4e-06%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 127933 127933 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C127%2C183%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-16%2C6e-17%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 128137 128137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C46%2C28%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold880 SAMTools SNP 128140 128140 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C57%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 128197 128197 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D502%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C312%2C3%2C172%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 128370 128370 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D461%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C444%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 128448 128448 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C14%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C2.3e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C24:27 scaffold880 SAMTools SNP 128705 128705 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 128748 128748 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C11%2C0%3BMQ%3D40%3BFQ%3D61%3BPV4%3D1%2C1%2C0.084%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C88:91 scaffold880 SAMTools SNP 129060 129060 58 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D40%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C162:91 scaffold880 SAMTools SNP 129196 129196 41 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C46%2C0%2C7%3BMQ%3D48%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold880 SAMTools SNP 129221 129221 101 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C10%3BMQ%3D48%3BFQ%3D104%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold880 SAMTools SNP 129553 129553 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold880 SAMTools SNP 129651 129651 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 129993 129993 147 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D0.14%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold880 SAMTools SNP 130008 130008 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold880 SAMTools SNP 130275 130275 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold880 SAMTools SNP 130769 130769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C5%2C87%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C0.055%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 131033 131033 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D44%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C39%2C0:75 scaffold880 SAMTools SNP 131042 131042 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C4.8e-16;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C206:51 scaffold880 SAMTools SNP 131071 131071 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C39%2C0:75 scaffold880 SAMTools SNP 131085 131085 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 131577 131577 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C9%3BMQ%3D48%3BFQ%3D-108%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold880 SAMTools SNP 131585 131585 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C22%2C9%3BMQ%3D47%3BFQ%3D-99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold880 SAMTools SNP 131768 131768 39 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold880 SAMTools SNP 131774 131774 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C4.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C22%2C0:41 scaffold880 SAMTools SNP 132696 132696 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D631%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D185%2C234%2C164%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D2.9e-34%2C0.43%2C0.00056%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 133272 133272 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D818%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C292%2C70%2C264%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 133368 133368 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D264%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold880 SAMTools SNP 133956 133956 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C203%2C60%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 136012 136012 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold880 SAMTools SNP 136019 136019 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold880 SAMTools SNP 136037 136037 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.007%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold880 SAMTools SNP 136043 136043 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.0023%2C0.062%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C176:99 scaffold880 SAMTools SNP 136393 136393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold880 SAMTools SNP 136444 136444 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold880 SAMTools SNP 136504 136504 39.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C12%2C0:21 scaffold880 SAMTools SNP 136513 136513 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C18%2C3%2C8%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.72%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold880 SAMTools SNP 136820 136820 32.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold880 SAMTools SNP 137200 137200 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C80:56 scaffold880 SAMTools SNP 137203 137203 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D248%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C27%2C0:51 scaffold880 SAMTools SNP 137302 137302 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold880 SAMTools SNP 137428 137428 13.9 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold880 SAMTools SNP 156761 156761 218 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold880 SAMTools SNP 156770 156770 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C15%2C0:27 scaffold880 SAMTools SNP 157507 157507 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold880 SAMTools SNP 157542 157542 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold880 SAMTools SNP 157564 157564 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold880 SAMTools SNP 157591 157591 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C36%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold880 SAMTools SNP 158802 158802 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold880 SAMTools SNP 158847 158847 224 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C75%2C38%2C7%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1.6e-09%2C5.2e-52%2C1%2C8.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold880 SAMTools SNP 158964 158964 160 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C0%2C20%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.015%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold880 SAMTools SNP 159504 159504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C63%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold880 SAMTools SNP 159534 159534 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C25%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold880 SAMTools SNP 159600 159600 37 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D40%3BPV4%3D3.9e-05%2C2.3e-08%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold880 SAMTools SNP 160370 160370 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C12%2C24%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 160376 160376 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C15%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 160910 160910 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C17%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C7.5e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold880 SAMTools SNP 161078 161078 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold880 SAMTools SNP 161117 161117 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C57%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold880 SAMTools SNP 161769 161769 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 162150 162150 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold880 SAMTools SNP 162656 162656 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold880 SAMTools SNP 162751 162751 90 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C2%2C34%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C9.4e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold880 SAMTools SNP 162785 162785 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C14%2C30%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.0012%2C2.7e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C224:99 scaffold880 SAMTools SNP 163305 163305 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold880 SAMTools SNP 163365 163365 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold880 SAMTools SNP 163413 163413 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C15%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.032%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C250:99 scaffold880 SAMTools SNP 163933 163933 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold880 SAMTools SNP 163969 163969 142 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold880 SAMTools SNP 163975 163975 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold880 SAMTools SNP 164480 164480 57.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C0.051%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C1%2C0:4 scaffold880 SAMTools SNP 164570 164570 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C1%2C21%2C15%3BMQ%3D50%3BFQ%3D-58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C31%2C0:59 scaffold880 SAMTools SNP 165098 165098 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C8%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.084%2C3.6e-08%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 165119 165119 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold880 SAMTools SNP 165942 165942 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 165963 165963 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.47%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold880 SAMTools SNP 165999 165999 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.00053%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C77:39 scaffold880 SAMTools SNP 166125 166125 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0051%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.3%2C5.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C190:30 scaffold880 SAMTools SNP 166212 166212 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold880 SAMTools SNP 166572 166572 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold880 SAMTools SNP 166702 166702 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 166730 166730 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.43%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C174:99 scaffold880 SAMTools SNP 166749 166749 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C247:37 scaffold880 SAMTools SNP 167687 167687 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold880 SAMTools SNP 167951 167951 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C27%2C54%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-08%2C0.0035%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 168442 168442 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold880 SAMTools SNP 168457 168457 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold880 SAMTools SNP 168915 168915 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold880 SAMTools SNP 168945 168945 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold880 SAMTools SNP 169050 169050 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C80:46 scaffold880 SAMTools SNP 169593 169593 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 170366 170366 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C116:99 scaffold880 SAMTools SNP 170440 170440 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.48%2C2.4e-08%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold880 SAMTools SNP 170455 170455 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.33%2C0.1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold880 SAMTools SNP 171091 171091 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C5%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.63%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold880 SAMTools SNP 171097 171097 164 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C3%2C3%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.1%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold880 SAMTools SNP 171205 171205 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C3%2C6%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.41%2C0.014%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold880 SAMTools SNP 171492 171492 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C2%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D1%2C0.31%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold880 SAMTools SNP 171531 171531 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D90%3BPV4%3D0.62%2C0.25%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold880 SAMTools SNP 171561 171561 17.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C41%2C38%2C47%2C0%2C44:6 scaffold880 SAMTools SNP 171597 171597 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold880 SAMTools SNP 171889 171889 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.075%2C1.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold880 SAMTools SNP 173894 173894 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C1%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold880 SAMTools SNP 176769 176769 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C10%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.45%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold880 SAMTools SNP 207190 207190 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 232056 232056 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.26%2C1%2C1%2C8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold880 SAMTools SNP 234535 234535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C75%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold880 SAMTools SNP 235602 235602 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C28%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold880 SAMTools SNP 239122 239122 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold880 SAMTools SNP 239127 239127 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 242782 242782 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C217:28 scaffold880 SAMTools SNP 242784 242784 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C221:54 scaffold880 SAMTools SNP 242846 242846 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold880 SAMTools SNP 243305 243305 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C0.11%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold880 SAMTools SNP 246895 246895 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.087%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold880 SAMTools SNP 246926 246926 209 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold880 SAMTools SNP 247461 247461 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C5%3BMQ%3D50%3BFQ%3D148%3BPV4%3D0.28%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C175:99 scaffold880 SAMTools SNP 248004 248004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold880 SAMTools SNP 248026 248026 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.32%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C180:99 scaffold880 SAMTools SNP 265618 265618 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C2.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C227:46 scaffold880 SAMTools SNP 279969 279969 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C24%2C0:45 scaffold880 SAMTools SNP 280062 280062 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold880 SAMTools SNP 280922 280922 32.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold880 SAMTools SNP 281718 281718 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 281754 281754 33.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold880 SAMTools SNP 281811 281811 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 282846 282846 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold880 SAMTools SNP 296709 296709 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 298029 298029 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold880 SAMTools SNP 302037 302037 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold880 SAMTools SNP 302525 302525 32 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold880 SAMTools SNP 303527 303527 98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C104%2C0%2C30%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C1%2C1%2C7e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold880 SAMTools SNP 303548 303548 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C98%3BMQ%3D50%3BFQ%3D-275%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C248%2C0:99 scaffold880 SAMTools SNP 303587 303587 190 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold880 SAMTools SNP 303733 303733 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold880 SAMTools SNP 304253 304253 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold880 SAMTools SNP 304712 304712 84.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C12%2C0:21 scaffold880 SAMTools SNP 304754 304754 81 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C42%2C0:81 scaffold880 SAMTools SNP 304877 304877 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0158%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C0.43%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold880 SAMTools SNP 305084 305084 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C11%3BMQ%3D50%3BFQ%3D131%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold880 SAMTools SNP 305117 305117 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold880 SAMTools SNP 305169 305169 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 306387 306387 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C6%2C2%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.37%2C0.059%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold880 SAMTools SNP 307221 307221 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold880 SAMTools SNP 309458 309458 17.1 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C45%2C42%2C47%2C0%2C44:6 scaffold880 SAMTools SNP 310103 310103 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D46%3BFQ%3D50%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C103:80 scaffold880 SAMTools SNP 311152 311152 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold880 SAMTools SNP 311865 311865 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold880 SAMTools SNP 311877 311877 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.28%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold880 SAMTools SNP 311880 311880 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 311907 311907 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold880 SAMTools SNP 311913 311913 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold880 SAMTools SNP 311923 311923 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold880 SAMTools SNP 313613 313613 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.36%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold880 SAMTools SNP 314031 314031 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold880 SAMTools SNP 314037 314037 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 323482 323482 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C14%2C12%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold880 SAMTools SNP 325512 325512 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D159%3BPV4%3D1%2C0.044%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C220:99 scaffold880 SAMTools SNP 325542 325542 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C39%2C0:75 scaffold880 SAMTools SNP 340059 340059 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C231%2C180:89 scaffold880 SAMTools SNP 340087 340087 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C11%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold880 SAMTools SNP 350906 350906 9.49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold880 SAMTools SNP 391429 391429 150 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C18%2C0:33 scaffold880 SAMTools SNP 391770 391770 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.028%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold880 SAMTools SNP 391794 391794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.011%2C0.011%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C180:99 scaffold880 SAMTools SNP 392523 392523 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold880 SAMTools SNP 392535 392535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold880 SAMTools SNP 392547 392547 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.18%2C0.019%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C237:99 scaffold880 SAMTools SNP 393142 393142 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C5%2C79%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.7e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 393169 393169 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D199%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C95%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold880 SAMTools SNP 393390 393390 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C75%2C104%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-20%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold880 SAMTools SNP 393894 393894 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C15%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.23%2C0.3%2C1%2C1.6e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold880 SAMTools SNP 407521 407521 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C19%3BMQ%3D39%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold880 SAMTools SNP 407548 407548 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C10%2C2%3BMQ%3D42%3BFQ%3D96%3BPV4%3D0.051%2C0.0055%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C199:99 scaffold880 SAMTools SNP 433432 433432 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold880 SAMTools SNP 434303 434303 3.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold880 SAMTools SNP 475318 475318 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold880 SAMTools SNP 512102 512102 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold880 SAMTools SNP 560248 560248 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold880 SAMTools SNP 563066 563066 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C24:27 scaffold880 SAMTools SNP 563544 563544 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 574024 574024 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 587622 587622 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 587790 587790 22.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C18%2C0:32 scaffold880 SAMTools SNP 589225 589225 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C8%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold880 SAMTools SNP 589255 589255 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C18%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold880 SAMTools SNP 589442 589442 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C40%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold880 SAMTools SNP 590291 590291 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold880 SAMTools SNP 590328 590328 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 603296 603296 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold880 SAMTools SNP 603940 603940 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold880 SAMTools SNP 603961 603961 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 616420 616420 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 616450 616450 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold880 SAMTools SNP 670855 670855 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold880 SAMTools SNP 683488 683488 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C37:35 scaffold885 SAMTools SNP 1858 1858 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 4298 4298 46.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold885 SAMTools SNP 22657 22657 28.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold885 SAMTools SNP 22676 22676 15.9 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold885 SAMTools SNP 23649 23649 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 23710 23710 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C13%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold885 SAMTools SNP 24639 24639 9.53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0009%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.85%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C24:28 scaffold885 SAMTools SNP 24690 24690 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C6%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C90%2C0:99 scaffold885 SAMTools SNP 25074 25074 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C23%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold885 SAMTools SNP 27250 27250 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C5%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold885 SAMTools SNP 27722 27722 21.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold885 SAMTools SNP 27872 27872 36 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C222:69 scaffold885 SAMTools SNP 28646 28646 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C10%2C50%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 28690 28690 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C14%2C5%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.68%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold885 SAMTools SNP 28767 28767 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C88%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 28883 28883 7.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold885 SAMTools SNP 29089 29089 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C77%2C5%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:213%2C247%2C0:99 scaffold885 SAMTools SNP 29142 29142 37.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold885 SAMTools SNP 29230 29230 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C5%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C255:70 scaffold885 SAMTools SNP 29505 29505 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C10%2C2%3BMQ%3D50%3BFQ%3D65.6%3BPV4%3D0.15%2C6.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C98:96 scaffold885 SAMTools SNP 30529 30529 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C36%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C120%2C0:99 scaffold885 SAMTools SNP 30605 30605 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C8%2C3%2C14%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0088%2C6.7e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold885 SAMTools SNP 30938 30938 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C4%2C24%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.092%2C4.1e-75%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold885 SAMTools SNP 31669 31669 90 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C66%2C0:99 scaffold885 SAMTools SNP 31774 31774 140 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C14%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C117%2C0:99 scaffold885 SAMTools SNP 31930 31930 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold885 SAMTools SNP 32651 32651 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold885 SAMTools SNP 32980 32980 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D79.9%3BPV4%3D1%2C7e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C107:99 scaffold885 SAMTools SNP 32985 32985 41.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C21%2C0:39 scaffold885 SAMTools SNP 34036 34036 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C48%2C0:93 scaffold885 SAMTools SNP 34524 34524 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C6%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.028%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C158:99 scaffold885 SAMTools SNP 35680 35680 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.58%2C1.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold885 SAMTools SNP 35974 35974 42 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C24%2C0:45 scaffold885 SAMTools SNP 36782 36782 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0210%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C30:33 scaffold885 SAMTools SNP 36922 36922 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold885 SAMTools SNP 37920 37920 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0093%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.25%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold885 SAMTools SNP 38353 38353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold885 SAMTools SNP 38369 38369 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold885 SAMTools SNP 38421 38421 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold885 SAMTools SNP 38994 38994 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 39163 39163 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold885 SAMTools SNP 39368 39368 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 39777 39777 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C214:54 scaffold885 SAMTools SNP 39778 39778 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C11%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.001%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C151:99 scaffold885 SAMTools SNP 39797 39797 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold885 SAMTools SNP 39919 39919 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C36%2C0:69 scaffold885 SAMTools SNP 40794 40794 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1.4e-11%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C132:43 scaffold885 SAMTools SNP 40892 40892 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.56%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold885 SAMTools SNP 41981 41981 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold885 SAMTools SNP 42067 42067 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.22%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold885 SAMTools SNP 42529 42529 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold885 SAMTools SNP 42571 42571 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C0.49%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C221:99 scaffold885 SAMTools SNP 42589 42589 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.01%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C121:99 scaffold885 SAMTools SNP 44639 44639 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold885 SAMTools SNP 47592 47592 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.6e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold885 SAMTools SNP 47793 47793 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C36%2C0:69 scaffold885 SAMTools SNP 72534 72534 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold885 SAMTools SNP 95463 95463 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 102620 102620 146 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.39%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C102:99 scaffold885 SAMTools SNP 102654 102654 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C246:99 scaffold885 SAMTools SNP 103553 103553 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C49%2C47%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 103847 103847 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C52%2C58%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 104254 104254 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 104665 104665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C14%2C29%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.29%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 104734 104734 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold885 SAMTools SNP 104998 104998 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C48%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold885 SAMTools SNP 105286 105286 9.52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C5.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold885 SAMTools SNP 105318 105318 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 105354 105354 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C23:26 scaffold885 SAMTools SNP 105623 105623 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C21:24 scaffold885 SAMTools SNP 105662 105662 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C1%2C0:4 scaffold885 SAMTools SNP 105908 105908 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold885 SAMTools SNP 105938 105938 188 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C1%2C1%2C1.7e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C106:99 scaffold885 SAMTools SNP 106022 106022 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold885 SAMTools SNP 106232 106232 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C23%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 106277 106277 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C28%2C2%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 106550 106550 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 106974 106974 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.076%2C0.073%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C221:99 scaffold885 SAMTools SNP 107424 107424 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold885 SAMTools SNP 107475 107475 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.49%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C124:99 scaffold885 SAMTools SNP 107521 107521 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 107898 107898 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 108000 108000 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold885 SAMTools SNP 108039 108039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C4%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold885 SAMTools SNP 108432 108432 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C4%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold885 SAMTools SNP 108495 108495 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold885 SAMTools SNP 109071 109071 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold885 SAMTools SNP 109083 109083 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.17%2C0.02%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C154:99 scaffold885 SAMTools SNP 109549 109549 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C30%2C0:56 scaffold885 SAMTools SNP 131996 131996 47.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C15%2C0:27 scaffold885 SAMTools SNP 133505 133505 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C41:44 scaffold885 SAMTools SNP 140912 140912 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 266324 266324 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold885 SAMTools SNP 274115 274115 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold885 SAMTools SNP 280026 280026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold885 SAMTools SNP 289966 289966 174 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C238:99 scaffold885 SAMTools SNP 307512 307512 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.45%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C168:99 scaffold885 SAMTools SNP 307803 307803 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 307809 307809 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.023%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold885 SAMTools SNP 307834 307834 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.49%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C171:31 scaffold885 SAMTools SNP 308376 308376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold885 SAMTools SNP 309214 309214 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 309827 309827 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 311263 311263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 311298 311298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 312188 312188 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 320362 320362 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C30%2C0:57 scaffold885 SAMTools SNP 320491 320491 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C0.42%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C227:99 scaffold885 SAMTools SNP 321204 321204 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C31%2C14%3BMQ%3D50%3BFQ%3D-101%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C74%2C0:99 scaffold885 SAMTools SNP 321225 321225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.033%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 321644 321644 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C17%2C5%2C6%3BMQ%3D35%3BFQ%3D16.1%3BPV4%3D0.74%2C0.16%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C177:46 scaffold885 SAMTools SNP 323386 323386 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 324234 324234 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C14%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0009%2C2.6e-13%2C1%2C3.3e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold885 SAMTools SNP 324441 324441 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D22%2C23%2C24%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D5.9e-06%2C1.6e-15%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold885 SAMTools SNP 324493 324493 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C27%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C0.41%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 324935 324935 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C5%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 325552 325552 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.076%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 325681 325681 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold885 SAMTools SNP 325922 325922 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold885 SAMTools SNP 325927 325927 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold885 SAMTools SNP 327024 327024 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C2%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.12%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold885 SAMTools SNP 327054 327054 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C4%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.0014%2C1%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C241:99 scaffold885 SAMTools SNP 327235 327235 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C0.053%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold885 SAMTools SNP 327240 327240 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold885 SAMTools SNP 327279 327279 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold885 SAMTools SNP 327766 327766 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold885 SAMTools SNP 327769 327769 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 327798 327798 144 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold885 SAMTools SNP 328795 328795 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 328880 328880 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C14%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.047%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold885 SAMTools SNP 329056 329056 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 329525 329525 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C30%2C24%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 329956 329956 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C22%2C13%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.1e-05%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 330001 330001 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C7%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 330533 330533 108 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold885 SAMTools SNP 331770 331770 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold885 SAMTools SNP 331782 331782 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold885 SAMTools SNP 331824 331824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C9%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold885 SAMTools SNP 332302 332302 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C14%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 332305 332305 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C31%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 333287 333287 79 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C26%2C0%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.00026%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C255:99 scaffold885 SAMTools SNP 334080 334080 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.55%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold885 SAMTools SNP 334081 334081 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.55%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold885 SAMTools SNP 334249 334249 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold885 SAMTools SNP 334714 334714 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.18%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C233:59 scaffold885 SAMTools SNP 335075 335075 191 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C11%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.45%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C238:99 scaffold885 SAMTools SNP 335262 335262 171 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C29%2C0%2C14%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.19%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold885 SAMTools SNP 335307 335307 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.25%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold885 SAMTools SNP 335325 335325 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 335355 335355 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 336201 336201 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 337649 337649 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold885 SAMTools SNP 337682 337682 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 342955 342955 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 342972 342972 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 342977 342977 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 343416 343416 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold885 SAMTools SNP 376057 376057 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 415820 415820 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold885 SAMTools SNP 415856 415856 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold885 SAMTools SNP 416090 416090 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 416315 416315 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 416336 416336 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 416354 416354 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 416622 416622 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0099%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold885 SAMTools SNP 416709 416709 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold885 SAMTools SNP 417155 417155 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold885 SAMTools SNP 417179 417179 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold885 SAMTools SNP 417191 417191 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.33%2C0.21%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C66:52 scaffold885 SAMTools SNP 417497 417497 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 417560 417560 9.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C41:40 scaffold885 SAMTools SNP 417638 417638 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.2e-05%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold885 SAMTools SNP 417710 417710 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold885 SAMTools SNP 430330 430330 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C21%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.071%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold885 SAMTools SNP 430768 430768 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold885 SAMTools SNP 430792 430792 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold885 SAMTools SNP 431616 431616 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold885 SAMTools SNP 432118 432118 58.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C21%2C0:39 scaffold885 SAMTools SNP 432139 432139 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 433538 433538 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold885 SAMTools SNP 433567 433567 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold885 SAMTools SNP 433588 433588 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold885 SAMTools SNP 433998 433998 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold885 SAMTools SNP 434028 434028 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold885 SAMTools SNP 434057 434057 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold885 SAMTools SNP 434277 434277 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold885 SAMTools SNP 434295 434295 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.054%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold885 SAMTools SNP 434322 434322 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 434364 434364 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold885 SAMTools SNP 434397 434397 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C10%2C1%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.51%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold885 SAMTools SNP 435655 435655 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 435657 435657 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 435660 435660 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 435693 435693 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C6%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 436256 436256 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C12%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 436283 436283 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C37%2C1%2C15%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.42%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold885 SAMTools SNP 436301 436301 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C40%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold885 SAMTools SNP 436599 436599 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 436979 436979 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0071%2C0.33%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold885 SAMTools SNP 437261 437261 40 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C48%2C0:84 scaffold885 SAMTools SNP 438699 438699 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 440077 440077 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold885 SAMTools SNP 440099 440099 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C15%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.6e-07%2C1%2C1%2C5.7e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 440453 440453 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D119%2C9%2C3%2C23%3BMQ%3D50%3BFQ%3D126%3BPV4%3D4.2e-17%2C0.0056%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold885 SAMTools SNP 440774 440774 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D214%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C108%2C65%2C1%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1.4e-25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold885 SAMTools SNP 441013 441013 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C41%2C6%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 441046 441046 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C29%2C104%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.53%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 442924 442924 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D45%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold885 SAMTools SNP 443397 443397 147 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C35%2C0%2C31%3BMQ%3D48%3BFQ%3D150%3BPV4%3D0.0011%2C5.7e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold885 SAMTools SNP 443431 443431 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C71%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold885 SAMTools SNP 443610 443610 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C14%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold885 SAMTools SNP 443620 443620 197 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C188:99 scaffold885 SAMTools SNP 443634 443634 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.033%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold885 SAMTools SNP 443995 443995 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold885 SAMTools SNP 444082 444082 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C50%2C32%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.53%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C116:99 scaffold885 SAMTools SNP 444209 444209 187 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C52%2C12%2C3%3BMQ%3D50%3BFQ%3D190%3BPV4%3D2.2e-05%2C0.043%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold885 SAMTools SNP 444490 444490 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C8%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0006%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 444523 444523 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C0.4%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 445016 445016 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold885 SAMTools SNP 445022 445022 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C11%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold885 SAMTools SNP 445093 445093 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C4.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C187:93 scaffold885 SAMTools SNP 445109 445109 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C11%2C34%2C1%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold885 SAMTools SNP 445677 445677 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C9%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1.1e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 447023 447023 26 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C17%2C10%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.68%2C1%2C1%2C1.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold885 SAMTools SNP 447789 447789 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C60%2C28%2C62%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C0.28%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 448317 448317 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C54%2C121%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 448327 448327 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C36%2C67%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 449176 449176 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C106%2C15%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 449221 449221 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D91%2C25%2C85%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1.7e-58%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 452454 452454 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold885 SAMTools SNP 452456 452456 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 455907 455907 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 455913 455913 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 460057 460057 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D600%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C558%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 462897 462897 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D751%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C520%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 462907 462907 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C63%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold885 SAMTools SNP 463970 463970 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C7%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold885 SAMTools SNP 464860 464860 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold885 SAMTools SNP 464878 464878 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C0%2C13%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.8e-15%2C0.43%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 465084 465084 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C18%2C39%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0054%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 465106 465106 13.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C54%2C1%2C11%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.17%2C2.4e-06%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold885 SAMTools SNP 465207 465207 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C142%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C255%2C0:99 scaffold885 SAMTools SNP 465255 465255 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C30%2C0:57 scaffold885 SAMTools SNP 465293 465293 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.00078%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C26:29 scaffold885 SAMTools SNP 465572 465572 104 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C237:99 scaffold885 SAMTools SNP 465594 465594 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C11%2C37%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0023%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold885 SAMTools SNP 465869 465869 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold885 SAMTools SNP 466255 466255 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D131%2C20%2C9%2C15%3BMQ%3D50%3BFQ%3D86%3BPV4%3D7.4e-07%2C4.5e-07%2C1%2C3.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold885 SAMTools SNP 466561 466561 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C36%2C15%2C0%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold885 SAMTools SNP 467039 467039 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C19%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.099%2C0.11%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 467072 467072 167 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C18%2C15%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.34%2C1%2C1%2C1.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold885 SAMTools SNP 467081 467081 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C70%2C1%2C33%3BMQ%3D50%3BFQ%3D140%3BPV4%3D1.4e-05%2C0.047%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold885 SAMTools SNP 467230 467230 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C110%2C41%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.8e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 467391 467391 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.23%2C0.23%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold885 SAMTools SNP 467439 467439 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C13%2C3%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 468169 468169 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C13%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold885 SAMTools SNP 468466 468466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 468469 468469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C23%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 468794 468794 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C29%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 468810 468810 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C20%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold885 SAMTools SNP 470235 470235 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C57%2C32%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00028%2C5.6e-06%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 470250 470250 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C58%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold885 SAMTools SNP 470265 470265 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C62%2C4%2C93%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 470500 470500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 470533 470533 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold885 SAMTools SNP 470695 470695 206 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C10%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold885 SAMTools SNP 470701 470701 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 471238 471238 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D328%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C278%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 471602 471602 28.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C21%2C0:38 scaffold885 SAMTools SNP 475690 475690 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C81%2C0:99 scaffold885 SAMTools SNP 479267 479267 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 479463 479463 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 479716 479716 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0208%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 479846 479846 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 480568 480568 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 488359 488359 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold885 SAMTools SNP 506248 506248 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C4%2C20%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.57%2C7.9e-08%2C1%2C3.2e-19;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold885 SAMTools SNP 506283 506283 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C40%2C32%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 506307 506307 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C37%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold885 SAMTools SNP 506329 506329 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 510680 510680 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 511478 511478 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C45%2C0:87 scaffold885 SAMTools SNP 511718 511718 53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C30%2C0:57 scaffold885 SAMTools SNP 512312 512312 134 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C1%2C31%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C2.1e-43%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold885 SAMTools SNP 512345 512345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C36%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold885 SAMTools SNP 512692 512692 18 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold885 SAMTools SNP 513410 513410 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C3%2C17%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.74%2C6.6e-44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold885 SAMTools SNP 514251 514251 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 514719 514719 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C16%2C12%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.015%2C3.2e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold885 SAMTools SNP 514733 514733 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C9%2C24%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.57%2C3.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold885 SAMTools SNP 514790 514790 35.5 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C35%2C23%2C68%2C0%2C62:21 scaffold885 SAMTools SNP 515072 515072 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C9%2C2%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C0.22%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold885 SAMTools SNP 515375 515375 140 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C41%2C16%2C51%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.093%2C1.2e-92%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold885 SAMTools SNP 515537 515537 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 516071 516071 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold885 SAMTools SNP 520402 520402 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.57%2C0.029%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold885 SAMTools SNP 522661 522661 199 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C55%2C9%2C6%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.017%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold885 SAMTools SNP 522672 522672 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C42%2C14%2C23%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.51%2C2.4e-28%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold885 SAMTools SNP 524954 524954 74.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C18%2C0:33 scaffold885 SAMTools SNP 525044 525044 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C1%2C11%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold885 SAMTools SNP 525210 525210 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C232:99 scaffold885 SAMTools SNP 525249 525249 126 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold885 SAMTools SNP 525881 525881 25 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D27.9%3BPV4%3D1%2C0.00019%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C71:58 scaffold885 SAMTools SNP 525890 525890 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold885 SAMTools SNP 526037 526037 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 526534 526534 34 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C6%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.56%2C3.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C246:67 scaffold885 SAMTools SNP 526668 526668 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C124:50 scaffold885 SAMTools SNP 527197 527197 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C99:99 scaffold885 SAMTools SNP 527759 527759 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold885 SAMTools SNP 527763 527763 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold885 SAMTools SNP 528040 528040 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 528044 528044 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold885 SAMTools SNP 534780 534780 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C13%2C18%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0021%2C7.1e-09%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold885 SAMTools SNP 539416 539416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C46%2C0%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 539473 539473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold885 SAMTools SNP 589624 589624 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold885 SAMTools SNP 660676 660676 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C0%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold885 SAMTools SNP 666989 666989 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C9%2C1%3BMQ%3D49%3BFQ%3D27%3BPV4%3D1%2C7.2e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C191:57 scaffold885 SAMTools SNP 667076 667076 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D49%3BFQ%3D11.3%3BPV4%3D1%2C3.4e-16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C215:40 scaffold885 SAMTools SNP 670011 670011 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C33%2C0:63 scaffold885 SAMTools SNP 670105 670105 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold885 SAMTools SNP 670162 670162 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold885 SAMTools SNP 672484 672484 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold885 SAMTools SNP 684503 684503 128 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold885 SAMTools SNP 684515 684515 51 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.12%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C158:84 scaffold885 SAMTools SNP 685125 685125 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold885 SAMTools SNP 689899 689899 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 689911 689911 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 690330 690330 61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold885 SAMTools SNP 690352 690352 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold885 SAMTools SNP 694185 694185 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 694560 694560 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 694932 694932 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold885 SAMTools SNP 695710 695710 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold885 SAMTools SNP 695732 695732 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 697949 697949 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold885 SAMTools SNP 701379 701379 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D610%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C555%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 701591 701591 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C135%2C0:99 scaffold885 SAMTools SNP 703723 703723 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C0.00028;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C203:99 scaffold885 SAMTools SNP 703759 703759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold885 SAMTools SNP 704908 704908 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold885 SAMTools SNP 704940 704940 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold885 SAMTools SNP 704962 704962 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.023%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold885 SAMTools SNP 705628 705628 41 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold885 SAMTools SNP 705678 705678 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C0.13%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold885 SAMTools SNP 705912 705912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 706619 706619 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C24%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C0.0013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 706676 706676 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C23%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 706940 706940 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C32%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold885 SAMTools SNP 706979 706979 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold885 SAMTools SNP 706994 706994 36 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold885 SAMTools SNP 707006 707006 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0:39 scaffold885 SAMTools SNP 707069 707069 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold885 SAMTools SNP 707557 707557 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0222%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold885 SAMTools SNP 707961 707961 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C4%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold885 SAMTools SNP 709647 709647 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C222:99 scaffold885 SAMTools SNP 710020 710020 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.21%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C178:99 scaffold885 SAMTools SNP 710598 710598 36.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C21%2C0:39 scaffold885 SAMTools SNP 710661 710661 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 710964 710964 45 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C9%2C0:16 scaffold885 SAMTools SNP 711057 711057 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold885 SAMTools SNP 712380 712380 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C166:62 scaffold885 SAMTools SNP 712422 712422 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold885 SAMTools SNP 712750 712750 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.51%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold885 SAMTools SNP 712810 712810 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.43%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C221:99 scaffold885 SAMTools SNP 713575 713575 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 713832 713832 101 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.45%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold885 SAMTools SNP 713862 713862 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C245:99 scaffold885 SAMTools SNP 714471 714471 75 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C2%2C2%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold885 SAMTools SNP 715364 715364 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold885 SAMTools SNP 716955 716955 38.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C15%2C0:27 scaffold885 SAMTools SNP 718889 718889 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C39%2C26%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 719475 719475 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 719635 719635 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C58%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold885 SAMTools SNP 719688 719688 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C4.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 720050 720050 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 720083 720083 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C1%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold885 SAMTools SNP 720268 720268 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C31%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold885 SAMTools SNP 721089 721089 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold885 SAMTools SNP 721107 721107 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.48%2C1%2C3.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold885 SAMTools SNP 721185 721185 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C32%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold885 SAMTools SNP 721459 721459 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold885 SAMTools SNP 721501 721501 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C16%2C54%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 721682 721682 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C44%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C0.47%2C1%2C8.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 721963 721963 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C15%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.18%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 721987 721987 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 722150 722150 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C6%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 722162 722162 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C17%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 722234 722234 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C22%2C0%2C13%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold885 SAMTools SNP 722490 722490 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold885 SAMTools SNP 722740 722740 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold885 SAMTools SNP 722800 722800 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold885 SAMTools SNP 722809 722809 152 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold885 SAMTools SNP 722866 722866 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold885 SAMTools SNP 723221 723221 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold885 SAMTools SNP 735860 735860 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 736260 736260 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C11%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C2.9e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold885 SAMTools SNP 738992 738992 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold885 SAMTools SNP 739742 739742 54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.018%2C0.00013%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold885 SAMTools SNP 739782 739782 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold885 SAMTools SNP 740350 740350 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C7%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 740356 740356 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 740437 740437 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold885 SAMTools SNP 740463 740463 49 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.082%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold885 SAMTools SNP 740639 740639 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold885 SAMTools SNP 740682 740682 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 740695 740695 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold885 SAMTools SNP 742468 742468 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C246:99 scaffold885 SAMTools SNP 742486 742486 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C249:99 scaffold885 SAMTools SNP 743085 743085 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C19%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 743794 743794 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold885 SAMTools SNP 743938 743938 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.7e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C243:60 scaffold885 SAMTools SNP 746425 746425 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold885 SAMTools SNP 749259 749259 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold885 SAMTools SNP 754408 754408 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold885 SAMTools SNP 754430 754430 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold885 SAMTools SNP 754588 754588 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold885 SAMTools SNP 754648 754648 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C21%2C0:39 scaffold885 SAMTools SNP 757019 757019 157 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C24%2C0:45 scaffold885 SAMTools SNP 757121 757121 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 757678 757678 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C2%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.29%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold885 SAMTools SNP 757699 757699 165 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C3%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold885 SAMTools SNP 759390 759390 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold885 SAMTools SNP 760223 760223 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 760232 760232 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 760707 760707 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold885 SAMTools SNP 761022 761022 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold885 SAMTools SNP 761025 761025 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold885 SAMTools SNP 761936 761936 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold885 SAMTools SNP 763004 763004 132 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C221:99 scaffold885 SAMTools SNP 763490 763490 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C2%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold885 SAMTools SNP 764271 764271 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.28%2C0.051%2C1%2C0.00098;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold885 SAMTools SNP 764284 764284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold885 SAMTools SNP 765308 765308 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold885 SAMTools SNP 778907 778907 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 778925 778925 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 816876 816876 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D6.06%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C38:33 scaffold885 SAMTools SNP 843525 843525 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold885 SAMTools SNP 843527 843527 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold885 SAMTools SNP 855350 855350 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 862518 862518 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 862958 862958 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold885 SAMTools SNP 863562 863562 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0088%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold885 SAMTools SNP 863572 863572 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.22%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold885 SAMTools SNP 863590 863590 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C12%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold885 SAMTools SNP 864456 864456 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C1%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold885 SAMTools SNP 864870 864870 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C40%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.0079%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 865220 865220 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C42%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 865560 865560 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C41%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 866731 866731 60.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C15%2C0:27 scaffold885 SAMTools SNP 877674 877674 138 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C237:99 scaffold885 SAMTools SNP 877906 877906 122 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C34%2C0%2C11%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold885 SAMTools SNP 878114 878114 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C52%2C0%2C17%3BMQ%3D50%3BFQ%3D39%3BPV4%3D8.3e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold885 SAMTools SNP 878141 878141 42 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C21%2C0%2C9%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00017%2C1%2C1%2C3.4e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold885 SAMTools SNP 878832 878832 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C21%2C0:39 scaffold885 SAMTools SNP 878835 878835 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C10%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold885 SAMTools SNP 878906 878906 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D162%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C15%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 880786 880786 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C11%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 880833 880833 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C39%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold885 SAMTools SNP 880843 880843 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C35%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold885 SAMTools SNP 881650 881650 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C1%2C8%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.065%2C1.4e-10%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold885 SAMTools SNP 881713 881713 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C36%2C0%2C11%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.026%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold885 SAMTools SNP 883569 883569 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.062%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 883586 883586 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C2%2C8%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold885 SAMTools SNP 884307 884307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C12%2C22%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 884614 884614 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold885 SAMTools SNP 885599 885599 224 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C26%2C1%2C13%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.35%2C1%2C1%2C0.00048;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C249:99 scaffold885 SAMTools SNP 885610 885610 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold885 SAMTools SNP 885630 885630 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold885 SAMTools SNP 885667 885667 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C9%2C0:16 scaffold885 SAMTools SNP 885916 885916 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold885 SAMTools SNP 885930 885930 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold885 SAMTools SNP 885944 885944 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 885960 885960 161 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold885 SAMTools SNP 886085 886085 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold885 SAMTools SNP 886144 886144 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold885 SAMTools SNP 886323 886323 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold885 SAMTools SNP 886357 886357 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold885 SAMTools SNP 958572 958572 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C95%2C18%2C13%3BMQ%3D38%3BFQ%3D43%3BPV4%3D1.1e-05%2C0.056%2C0.021%2C9.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C205:73 scaffold885 SAMTools SNP 970575 970575 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 973085 973085 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 973194 973194 6.17 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold885 SAMTools SNP 973227 973227 27.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold885 SAMTools SNP 973645 973645 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold885 SAMTools SNP 973696 973696 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold885 SAMTools SNP 973723 973723 131 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold885 SAMTools SNP 975365 975365 70 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C74:77 scaffold885 SAMTools SNP 977325 977325 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold885 SAMTools SNP 1010298 1010298 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold885 SAMTools SNP 1017161 1017161 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold885 SAMTools SNP 1019183 1019183 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C16%2C6%2C0%3BMQ%3D48%3BFQ%3D28%3BPV4%3D0.0068%2C4.7e-07%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold885 SAMTools SNP 1025182 1025182 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold885 SAMTools SNP 1028092 1028092 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold885 SAMTools SNP 1044751 1044751 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold885 SAMTools SNP 1045005 1045005 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 2372 2372 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold888 SAMTools SNP 2398 2398 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.077%2C0.00082%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C251:99 scaffold888 SAMTools SNP 3914 3914 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold888 SAMTools SNP 4384 4384 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.16%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold888 SAMTools SNP 16176 16176 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C24%2C57%2C17%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.72%2C2.2e-184%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold888 SAMTools SNP 16362 16362 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold888 SAMTools SNP 17767 17767 185 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C17%2C19%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.13%2C0.046%2C1%2C1.7e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold888 SAMTools SNP 27781 27781 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold888 SAMTools SNP 28303 28303 10.4 . . REF=T;ALT=G,A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C13%2C10%2C40%2C0%2C37:5 scaffold888 SAMTools SNP 32413 32413 190 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold888 SAMTools SNP 32454 32454 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C228:51 scaffold888 SAMTools SNP 33798 33798 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C1%2C96%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 33885 33885 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D294%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C135%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold888 SAMTools SNP 33982 33982 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold888 SAMTools SNP 35556 35556 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold888 SAMTools SNP 38794 38794 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C9%2C0:16 scaffold888 SAMTools SNP 46102 46102 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold888 SAMTools SNP 46217 46217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold888 SAMTools SNP 47707 47707 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold888 SAMTools SNP 48159 48159 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold888 SAMTools SNP 48165 48165 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C15%2C0:27 scaffold888 SAMTools SNP 48249 48249 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 48252 48252 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 52069 52069 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C0.25%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C222:99 scaffold888 SAMTools SNP 52476 52476 8.65 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold888 SAMTools SNP 52715 52715 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C210:99 scaffold888 SAMTools SNP 52745 52745 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.14%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold888 SAMTools SNP 55727 55727 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C25%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 56068 56068 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold888 SAMTools SNP 56370 56370 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C61%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 56406 56406 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C36%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C2.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 61456 61456 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold888 SAMTools SNP 61459 61459 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.22%2C0.22%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold888 SAMTools SNP 61477 61477 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 66842 66842 124 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C154:99 scaffold888 SAMTools SNP 67358 67358 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold888 SAMTools SNP 67394 67394 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C15%2C7%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.077%2C0.00023%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold888 SAMTools SNP 67427 67427 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold888 SAMTools SNP 67479 67479 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C8%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C227:99 scaffold888 SAMTools SNP 67496 67496 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C3%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold888 SAMTools SNP 67690 67690 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C7.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C233:62 scaffold888 SAMTools SNP 67799 67799 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C3.1e-09%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C154:62 scaffold888 SAMTools SNP 67852 67852 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C150:99 scaffold888 SAMTools SNP 67873 67873 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold888 SAMTools SNP 68156 68156 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 68160 68160 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold888 SAMTools SNP 68556 68556 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold888 SAMTools SNP 68568 68568 131 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C27%2C0:51 scaffold888 SAMTools SNP 68592 68592 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0011%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.36%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C35:38 scaffold888 SAMTools SNP 68607 68607 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold888 SAMTools SNP 69052 69052 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold888 SAMTools SNP 69053 69053 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold888 SAMTools SNP 70093 70093 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C26%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold888 SAMTools SNP 70115 70115 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C26%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold888 SAMTools SNP 70176 70176 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C7%2C4%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.5e-05%2C0.00015%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 70182 70182 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00042%2C0.15%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 70186 70186 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C14%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.4e-05%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 70375 70375 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.29%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold888 SAMTools SNP 70534 70534 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C1%2C30%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.03%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C228:99 scaffold888 SAMTools SNP 70814 70814 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C22%2C10%2C9%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.79%2C1.3e-15%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold888 SAMTools SNP 71135 71135 120 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C0%2C12%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold888 SAMTools SNP 71306 71306 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold888 SAMTools SNP 71327 71327 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.06%2C0.1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold888 SAMTools SNP 71462 71462 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C9%2C1%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.02%2C0.071%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold888 SAMTools SNP 71481 71481 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.16%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold888 SAMTools SNP 71497 71497 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.6%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold888 SAMTools SNP 71524 71524 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold888 SAMTools SNP 71553 71553 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold888 SAMTools SNP 71554 71554 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold888 SAMTools SNP 71952 71952 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold888 SAMTools SNP 72377 72377 37.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold888 SAMTools SNP 73184 73184 121 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold888 SAMTools SNP 73213 73213 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold888 SAMTools SNP 73562 73562 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold888 SAMTools SNP 73579 73579 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold888 SAMTools SNP 73733 73733 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C241:99 scaffold888 SAMTools SNP 74065 74065 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.059%2C0.00045%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold888 SAMTools SNP 74084 74084 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C11%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C166:99 scaffold888 SAMTools SNP 74159 74159 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold888 SAMTools SNP 74204 74204 205 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C17:57 scaffold888 SAMTools SNP 74351 74351 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C24%2C0:45 scaffold888 SAMTools SNP 74840 74840 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold888 SAMTools SNP 74905 74905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C28%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold888 SAMTools SNP 75959 75959 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C1%2C15%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C3.4e-09%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C210:99 scaffold888 SAMTools SNP 75970 75970 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold888 SAMTools SNP 76006 76006 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.44%2C2.5e-06%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold888 SAMTools SNP 76291 76291 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold888 SAMTools SNP 76635 76635 66 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.044%2C2.1e-06%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold888 SAMTools SNP 76650 76650 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold888 SAMTools SNP 76664 76664 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.19%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold888 SAMTools SNP 76761 76761 86 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D79.5%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C107:99 scaffold888 SAMTools SNP 76800 76800 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold888 SAMTools SNP 76805 76805 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold888 SAMTools SNP 78434 78434 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C14%2C13%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold888 SAMTools SNP 79407 79407 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold888 SAMTools SNP 79419 79419 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0270%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C5%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C29:32 scaffold888 SAMTools SNP 79446 79446 72 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.012%2C1%2C1%2C3.2e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C175:99 scaffold888 SAMTools SNP 79467 79467 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.003%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C185:99 scaffold888 SAMTools SNP 79740 79740 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.15%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C222:64 scaffold888 SAMTools SNP 80255 80255 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold888 SAMTools SNP 83787 83787 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 83959 83959 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold888 SAMTools SNP 87785 87785 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 87816 87816 216 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold888 SAMTools SNP 89486 89486 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold888 SAMTools SNP 89809 89809 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold888 SAMTools SNP 93487 93487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold888 SAMTools SNP 94554 94554 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold888 SAMTools SNP 94661 94661 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C71:74 scaffold888 SAMTools SNP 95415 95415 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold888 SAMTools SNP 102621 102621 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C11%2C92%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.077%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 103074 103074 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C20%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold888 SAMTools SNP 103151 103151 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold888 SAMTools SNP 103334 103334 12 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold888 SAMTools SNP 104460 104460 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold888 SAMTools SNP 108254 108254 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C6%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.0028%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold888 SAMTools SNP 108275 108275 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0039%2C0.23%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C150:99 scaffold888 SAMTools SNP 108827 108827 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.45%2C5.4e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C177:66 scaffold888 SAMTools SNP 108925 108925 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 112188 112188 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold888 SAMTools SNP 116914 116914 113 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.06%2C3.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C242:99 scaffold888 SAMTools SNP 116963 116963 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:105%2C33%2C0:63 scaffold888 SAMTools SNP 118322 118322 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C39%2C0%2C11%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.33%2C0.00032%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold888 SAMTools SNP 118993 118993 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C18%2C0%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.0037%2C1%2C1%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold888 SAMTools SNP 120121 120121 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C111%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold888 SAMTools SNP 120883 120883 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C42%2C2%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C0.34%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 121213 121213 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C8.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 121285 121285 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C6%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold888 SAMTools SNP 122171 122171 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D524%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D121%2C167%2C2%2C98%3BMQ%3D50%3BFQ%3D157%3BPV4%3D5e-17%2C0.35%2C1%2C4.6e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold888 SAMTools SNP 138778 138778 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D35%3BFQ%3D40%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C118:70 scaffold888 SAMTools SNP 139065 139065 91.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold888 SAMTools SNP 142804 142804 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 143269 143269 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D35%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C24%2C0:45 scaffold888 SAMTools SNP 143803 143803 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C30%2C14%2C39%3BMQ%3D45%3BFQ%3D196%3BPV4%3D0.0074%2C0.38%2C0.036%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold888 SAMTools SNP 143953 143953 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C3%3BMQ%3D44%3BFQ%3D37%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C64:67 scaffold888 SAMTools SNP 144478 144478 87 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D23%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C45%2C0:87 scaffold888 SAMTools SNP 145262 145262 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C199%2C14%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.015%2C1.3e-43%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C255%2C0:99 scaffold888 SAMTools SNP 145347 145347 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D358%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C39%2C0:75 scaffold888 SAMTools SNP 145364 145364 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C113%2C205%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.54%2C1.9e-16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C255%2C0:99 scaffold888 SAMTools SNP 145450 145450 71 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:104%2C42%2C0:81 scaffold888 SAMTools SNP 145535 145535 86.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold888 SAMTools SNP 145738 145738 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold888 SAMTools SNP 149961 149961 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C6%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.47%2C2.3e-10%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C197:64 scaffold888 SAMTools SNP 150452 150452 20 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C5.1e-05%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C177:53 scaffold888 SAMTools SNP 151013 151013 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold888 SAMTools SNP 151127 151127 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.55%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C202:99 scaffold888 SAMTools SNP 151898 151898 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C2%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C145:99 scaffold888 SAMTools SNP 152323 152323 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C204:99 scaffold888 SAMTools SNP 152683 152683 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold888 SAMTools SNP 152686 152686 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C201:99 scaffold888 SAMTools SNP 152854 152854 49 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C186:82 scaffold888 SAMTools SNP 152911 152911 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold888 SAMTools SNP 159387 159387 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold888 SAMTools SNP 159440 159440 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold888 SAMTools SNP 160552 160552 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold888 SAMTools SNP 160597 160597 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold888 SAMTools SNP 167030 167030 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 167042 167042 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 167431 167431 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold888 SAMTools SNP 175719 175719 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold888 SAMTools SNP 178410 178410 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold888 SAMTools SNP 179470 179470 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold888 SAMTools SNP 179499 179499 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold888 SAMTools SNP 181969 181969 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold888 SAMTools SNP 188976 188976 42 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.45%2C7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C152:75 scaffold888 SAMTools SNP 188982 188982 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold888 SAMTools SNP 189378 189378 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C1%2C10%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.64%2C1.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold888 SAMTools SNP 189576 189576 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.16%2C1.3e-08%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold888 SAMTools SNP 192583 192583 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C222:40 scaffold888 SAMTools SNP 192733 192733 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0263%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold888 SAMTools SNP 194263 194263 35.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold888 SAMTools SNP 195942 195942 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold888 SAMTools SNP 195967 195967 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C15%2C0%3BMQ%3D48%3BFQ%3D117%3BPV4%3D1%2C0.49%2C1%2C0.00018;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold888 SAMTools SNP 197142 197142 174 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C33%2C25%2C5%3BMQ%3D42%3BFQ%3D177%3BPV4%3D0.0067%2C0.022%2C2.7e-06%2C2.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold888 SAMTools SNP 197191 197191 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C15%2C7%3BMQ%3D38%3BFQ%3D225%3BPV4%3D0.59%2C0.5%2C1%2C2.1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 197195 197195 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C17%2C12%2C1%3BMQ%3D35%3BFQ%3D83%3BPV4%3D0.04%2C0.15%2C0.19%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold888 SAMTools SNP 197583 197583 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C31%2C19%2C16%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.84%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 205543 205543 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold888 SAMTools SNP 209963 209963 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C16%3BMQ%3D31%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C54%2C0:99 scaffold888 SAMTools SNP 210572 210572 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C44%2C6%2C28%3BMQ%3D45%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 210781 210781 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C8%3BMQ%3D47%3BFQ%3D129%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold888 SAMTools SNP 210786 210786 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C6%3BMQ%3D48%3BFQ%3D48%3BPV4%3D1%2C0.28%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C242:78 scaffold888 SAMTools SNP 211331 211331 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C31%2C18%2C6%3BMQ%3D30%3BFQ%3D75%3BPV4%3D0.001%2C1%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C225:99 scaffold888 SAMTools SNP 211341 211341 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C29%2C18%2C5%3BMQ%3D30%3BFQ%3D57%3BPV4%3D0.00078%2C1%2C0.012%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C225:87 scaffold888 SAMTools SNP 211342 211342 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C17%2C6%2C17%3BMQ%3D30%3BFQ%3D145%3BPV4%3D0.0096%2C0.025%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C217:99 scaffold888 SAMTools SNP 211370 211370 12.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C9%2C8%2C10%3BMQ%3D26%3BFQ%3D-38%3BPV4%3D0.23%2C6.1e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C11%2C0:17 scaffold888 SAMTools SNP 211424 211424 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C23%2C13%3BMQ%3D35%3BFQ%3D160%3BPV4%3D0.051%2C1.6e-06%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C187:99 scaffold888 SAMTools SNP 212460 212460 68 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C6%2C8%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.039%2C2.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold888 SAMTools SNP 212511 212511 78 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C4%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold888 SAMTools SNP 213282 213282 126 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C132:99 scaffold888 SAMTools SNP 213288 213288 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold888 SAMTools SNP 213293 213293 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold888 SAMTools SNP 213296 213296 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold888 SAMTools SNP 223272 223272 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold888 SAMTools SNP 223325 223325 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 223760 223760 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 223776 223776 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 266706 266706 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold888 SAMTools SNP 267698 267698 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 267755 267755 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold888 SAMTools SNP 267999 267999 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold888 SAMTools SNP 269021 269021 20.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold888 SAMTools SNP 272824 272824 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 273915 273915 111 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold888 SAMTools SNP 274244 274244 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C64:40 scaffold888 SAMTools SNP 274612 274612 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold888 SAMTools SNP 274651 274651 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold888 SAMTools SNP 285314 285314 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C15%2C3%2C4%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C3e-10%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold888 SAMTools SNP 285413 285413 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0372%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.034%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C251:37 scaffold888 SAMTools SNP 285464 285464 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.27%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C248:99 scaffold888 SAMTools SNP 285769 285769 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.51%2C0.059%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C179:99 scaffold888 SAMTools SNP 286879 286879 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C33%2C0:63 scaffold888 SAMTools SNP 288243 288243 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold888 SAMTools SNP 288508 288508 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C4%2C5%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.36%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold888 SAMTools SNP 288538 288538 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold888 SAMTools SNP 288643 288643 140 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold888 SAMTools SNP 288679 288679 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C17%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold888 SAMTools SNP 289335 289335 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C0%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C229:94 scaffold888 SAMTools SNP 304783 304783 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold888 SAMTools SNP 304846 304846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold888 SAMTools SNP 305536 305536 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold888 SAMTools SNP 305608 305608 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.57%2C4.7e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold888 SAMTools SNP 305698 305698 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold888 SAMTools SNP 305713 305713 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold888 SAMTools SNP 306108 306108 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold888 SAMTools SNP 306147 306147 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.15%2C7.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C235:31 scaffold888 SAMTools SNP 306201 306201 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold888 SAMTools SNP 306207 306207 76 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D1%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold888 SAMTools SNP 306738 306738 180 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.31%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C141:99 scaffold888 SAMTools SNP 306751 306751 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold888 SAMTools SNP 306759 306759 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C200:99 scaffold888 SAMTools SNP 306810 306810 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C8%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C88:91 scaffold888 SAMTools SNP 308223 308223 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold888 SAMTools SNP 310844 310844 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.39%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 310892 310892 153 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold888 SAMTools SNP 310955 310955 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C11%2C2%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0018%2C1.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold888 SAMTools SNP 310962 310962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C10%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold888 SAMTools SNP 311951 311951 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C15%2C0:27 scaffold888 SAMTools SNP 312645 312645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold888 SAMTools SNP 313391 313391 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C57%2C9%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 314613 314613 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C41%2C0%2C21%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold888 SAMTools SNP 317974 317974 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold888 SAMTools SNP 317991 317991 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.048%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold888 SAMTools SNP 318450 318450 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.048%2C3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C129:94 scaffold888 SAMTools SNP 318515 318515 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold888 SAMTools SNP 318847 318847 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold888 SAMTools SNP 318865 318865 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold888 SAMTools SNP 318940 318940 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C10%2C18%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold888 SAMTools SNP 318961 318961 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C21%2C22%3BMQ%3D50%3BFQ%3D-109%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C82%2C0:99 scaffold888 SAMTools SNP 319873 319873 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D17%2C13%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold888 SAMTools SNP 319947 319947 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C16%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 320649 320649 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C28%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold888 SAMTools SNP 321678 321678 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C247:99 scaffold888 SAMTools SNP 321731 321731 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C17%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold888 SAMTools SNP 321799 321799 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 321812 321812 200 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold888 SAMTools SNP 322697 322697 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold888 SAMTools SNP 323088 323088 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.58%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C215:99 scaffold888 SAMTools SNP 323577 323577 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold888 SAMTools SNP 323601 323601 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold888 SAMTools SNP 323611 323611 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 323619 323619 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 323647 323647 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C151:74 scaffold888 SAMTools SNP 324115 324115 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold888 SAMTools SNP 327505 327505 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold888 SAMTools SNP 328197 328197 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold888 SAMTools SNP 328203 328203 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold888 SAMTools SNP 328234 328234 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.055%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C200:48 scaffold888 SAMTools SNP 328272 328272 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold888 SAMTools SNP 328275 328275 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold888 SAMTools SNP 328975 328975 142 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C175:99 scaffold888 SAMTools SNP 330089 330089 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C16%2C9%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.48%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C197:99 scaffold888 SAMTools SNP 330158 330158 75 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.19%2C0.052%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C253:99 scaffold888 SAMTools SNP 330246 330246 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C57%2C0:99 scaffold888 SAMTools SNP 330281 330281 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C90:93 scaffold888 SAMTools SNP 331199 331199 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold888 SAMTools SNP 331217 331217 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold890 SAMTools SNP 40153 40153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C44%2C19%3BMQ%3D50%3BFQ%3D-170%3BPV4%3D0.31%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C143%2C0:99 scaffold890 SAMTools SNP 40261 40261 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C42%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold890 SAMTools SNP 40411 40411 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C41%3BMQ%3D50%3BFQ%3D-106%3BPV4%3D1%2C1%2C1%2C4.2e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C79%2C0:99 scaffold890 SAMTools SNP 40426 40426 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold890 SAMTools SNP 40429 40429 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold890 SAMTools SNP 42116 42116 182 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.15%2C0.27%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C227:99 scaffold890 SAMTools SNP 42131 42131 141 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C214:99 scaffold890 SAMTools SNP 42370 42370 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C9%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.039%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 42407 42407 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.021%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 42778 42778 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold890 SAMTools SNP 42806 42806 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.27%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold890 SAMTools SNP 42846 42846 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C96%2C0:99 scaffold890 SAMTools SNP 42885 42885 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C10%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold890 SAMTools SNP 43054 43054 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C6%2C18%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 43093 43093 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C11%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 44087 44087 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold890 SAMTools SNP 46516 46516 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold890 SAMTools SNP 51361 51361 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 51370 51370 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 51517 51517 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 51955 51955 173 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.51%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold890 SAMTools SNP 51981 51981 136 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C3%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C255:99 scaffold890 SAMTools SNP 53522 53522 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0125%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00017%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C242:28 scaffold890 SAMTools SNP 53539 53539 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C120:85 scaffold890 SAMTools SNP 54394 54394 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold890 SAMTools SNP 54804 54804 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.0018%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C160:49 scaffold890 SAMTools SNP 55185 55185 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold890 SAMTools SNP 55409 55409 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C222:40 scaffold890 SAMTools SNP 56721 56721 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.061%2C0.0038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C250:66 scaffold890 SAMTools SNP 56763 56763 74 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0135%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold890 SAMTools SNP 56775 56775 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C223:79 scaffold890 SAMTools SNP 57185 57185 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 57296 57296 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 58335 58335 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold890 SAMTools SNP 58368 58368 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C138:85 scaffold890 SAMTools SNP 58398 58398 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C134:36 scaffold890 SAMTools SNP 59795 59795 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.1%2C5.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C77:79 scaffold890 SAMTools SNP 59969 59969 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C2e-06%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C26:29 scaffold890 SAMTools SNP 60360 60360 24.5 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold890 SAMTools SNP 61325 61325 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold890 SAMTools SNP 63571 63571 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold890 SAMTools SNP 63676 63676 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 63694 63694 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 64077 64077 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold890 SAMTools SNP 64107 64107 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold890 SAMTools SNP 64450 64450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold890 SAMTools SNP 65748 65748 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 67145 67145 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold890 SAMTools SNP 67758 67758 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C174:31 scaffold890 SAMTools SNP 68820 68820 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C24%2C16%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D4.8e-05%2C5.2e-09%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold890 SAMTools SNP 68953 68953 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 69403 69403 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold890 SAMTools SNP 69451 69451 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C9%2C6%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.62%2C0.096%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C163:99 scaffold890 SAMTools SNP 73004 73004 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C15%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.27%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold890 SAMTools SNP 78753 78753 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C4%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.68%2C3.7e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold890 SAMTools SNP 78798 78798 48 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.33%2C2.1e-18%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold890 SAMTools SNP 79494 79494 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C6.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C206:61 scaffold890 SAMTools SNP 80358 80358 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C16%2C7%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.74%2C2.2e-31%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold890 SAMTools SNP 80565 80565 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C1%2C13%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C7.6e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C205:55 scaffold890 SAMTools SNP 80807 80807 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C48%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C199%2C0:99 scaffold890 SAMTools SNP 81182 81182 5.46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D31%2C4%2C18%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.29%2C1e-43%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold890 SAMTools SNP 81280 81280 159 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C26%2C0%2C13%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.085%2C0.34%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold890 SAMTools SNP 81290 81290 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C31%2C0%2C14%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold890 SAMTools SNP 90611 90611 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.022%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold890 SAMTools SNP 91005 91005 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold890 SAMTools SNP 91537 91537 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 97591 97591 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C0%2C44%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 97633 97633 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C6%2C164%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 98412 98412 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C97%2C3%2C60%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.68%2C1.2e-69%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold890 SAMTools SNP 98447 98447 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.9e-05%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C110:42 scaffold890 SAMTools SNP 100945 100945 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold890 SAMTools SNP 101678 101678 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 101854 101854 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold890 SAMTools SNP 103017 103017 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 106871 106871 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C1%2C45%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.3%2C3.6e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold890 SAMTools SNP 107536 107536 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C173:99 scaffold890 SAMTools SNP 108365 108365 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C16%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.28%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold890 SAMTools SNP 108982 108982 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C16%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold890 SAMTools SNP 109029 109029 12.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.0012%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold890 SAMTools SNP 110603 110603 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C8.1e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C77:41 scaffold890 SAMTools SNP 116010 116010 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 116187 116187 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C51%2C15%3BMQ%3D50%3BFQ%3D-196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold890 SAMTools SNP 116217 116217 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C49%2C20%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 117063 117063 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C70%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold890 SAMTools SNP 117088 117088 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold890 SAMTools SNP 117407 117407 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C131%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 117850 117850 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C34%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold890 SAMTools SNP 118626 118626 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold890 SAMTools SNP 118665 118665 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold890 SAMTools SNP 118677 118677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold890 SAMTools SNP 119023 119023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold890 SAMTools SNP 119049 119049 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold890 SAMTools SNP 120213 120213 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C53%2C43%3BMQ%3D50%3BFQ%3D-266%3BPV4%3D0.45%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C239%2C0:99 scaffold890 SAMTools SNP 120246 120246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 120699 120699 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C15%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold890 SAMTools SNP 120735 120735 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold890 SAMTools SNP 122780 122780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold890 SAMTools SNP 122850 122850 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold890 SAMTools SNP 123080 123080 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold890 SAMTools SNP 124102 124102 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.33%2C0.02%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C80:62 scaffold890 SAMTools SNP 125010 125010 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 125429 125429 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0187%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold890 SAMTools SNP 125506 125506 144 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold890 SAMTools SNP 126977 126977 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 129306 129306 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C20%3BMQ%3D1%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C81%2C0:69 scaffold890 SAMTools SNP 130553 130553 174 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C73%2C2%3BMQ%3D42%3BFQ%3D118%3BPV4%3D1.7e-06%2C0.095%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C145:99 scaffold890 SAMTools SNP 130595 130595 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D70%2C9%2C15%2C0%3BMQ%3D44%3BFQ%3D61%3BPV4%3D0.35%2C0.35%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C197:91 scaffold890 SAMTools SNP 130972 130972 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D34%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold890 SAMTools SNP 131543 131543 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D362%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C70%2C24%2C238%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.52%2C1.2e-05%2C0.065%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 132808 132808 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C118%2C10%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D0.032%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C42:45 scaffold890 SAMTools SNP 132837 132837 194 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C3%2C107%2C4%3BMQ%3D48%3BFQ%3D35%3BPV4%3D0.089%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C62:65 scaffold890 SAMTools SNP 132909 132909 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C80:42 scaffold890 SAMTools SNP 133175 133175 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D420%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C50%2C178%2C153%3BMQ%3D36%3BFQ%3D163%3BPV4%3D0.12%2C1%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold890 SAMTools SNP 133710 133710 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C2%3BMQ%3D39%3BFQ%3D101%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C147:99 scaffold890 SAMTools SNP 133914 133914 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C2%2C131%2C7%3BMQ%3D48%3BFQ%3D169%3BPV4%3D1%2C0.26%2C0.13%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold890 SAMTools SNP 134038 134038 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold890 SAMTools SNP 134299 134299 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D7%2C1%2C0%2C2%3BMQ%3D27%3BFQ%3D8.65%3BPV4%3D0.067%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C35:38 scaffold890 SAMTools SNP 134322 134322 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D28%3BFQ%3D10.4%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C37:40 scaffold890 SAMTools SNP 134327 134327 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C9%3BMQ%3D32%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1.5e-05%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C142:33 scaffold890 SAMTools SNP 134355 134355 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C2%2C0%3BMQ%3D26%3BFQ%3D12.3%3BPV4%3D0.098%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C84:41 scaffold890 SAMTools SNP 134385 134385 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C14%2C2%2C0%3BMQ%3D25%3BFQ%3D6.98%3BPV4%3D0.079%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C78:33 scaffold890 SAMTools SNP 134828 134828 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.074%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold890 SAMTools SNP 134993 134993 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold890 SAMTools SNP 135015 135015 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.25%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C228:99 scaffold890 SAMTools SNP 135136 135136 157 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C17%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C96%2C0:99 scaffold890 SAMTools SNP 135329 135329 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D514%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C445%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 135411 135411 7.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D175%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C0%2C8%2C112%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D9e-09%2C2.9e-52%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C108%2C0:54 scaffold890 SAMTools SNP 135749 135749 68 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C45%2C0:87 scaffold890 SAMTools SNP 136749 136749 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D194%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C193%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C255%2C0:99 scaffold890 SAMTools SNP 137778 137778 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C24%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold890 SAMTools SNP 138381 138381 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C255%2C0:99 scaffold890 SAMTools SNP 138643 138643 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C14%2C13%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.2%2C1.5e-46%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold890 SAMTools SNP 139032 139032 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00012%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C238:40 scaffold890 SAMTools SNP 139539 139539 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.4%2C0.004%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C85:42 scaffold890 SAMTools SNP 139704 139704 181 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C160%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:214%2C255%2C0:99 scaffold890 SAMTools SNP 140659 140659 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C9%2C0:16 scaffold890 SAMTools SNP 140662 140662 155 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C4%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C42%2C0:81 scaffold890 SAMTools SNP 140948 140948 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C40%2C18%3BMQ%3D50%3BFQ%3D67%3BPV4%3D0.74%2C2.8e-63%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C243:97 scaffold890 SAMTools SNP 141498 141498 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C9%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D1%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold890 SAMTools SNP 142717 142717 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D334%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C12%2C132%2C183%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.018%2C5.3e-162%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C255%2C0:99 scaffold890 SAMTools SNP 143061 143061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C29%2C130%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.0048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C178:99 scaffold890 SAMTools SNP 143236 143236 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C89%2C95%3BMQ%3D50%3BFQ%3D-252%3BPV4%3D0.00037%2C0.0001%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C225%2C0:99 scaffold890 SAMTools SNP 143252 143252 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C75%2C18%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C69:72 scaffold890 SAMTools SNP 143640 143640 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C3%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0044%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 143667 143667 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 144250 144250 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 146596 146596 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 146603 146603 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 146700 146700 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold890 SAMTools SNP 146783 146783 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold890 SAMTools SNP 147108 147108 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.09%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold890 SAMTools SNP 147320 147320 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.04%2C1%2C7.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold890 SAMTools SNP 147581 147581 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C66:69 scaffold890 SAMTools SNP 147626 147626 159 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C145:99 scaffold890 SAMTools SNP 147939 147939 53.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C15%2C0:27 scaffold890 SAMTools SNP 148395 148395 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold890 SAMTools SNP 148479 148479 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold890 SAMTools SNP 148717 148717 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C24%2C0:44 scaffold890 SAMTools SNP 148906 148906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold890 SAMTools SNP 149023 149023 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D8%2C1%2C96%2C88%3BMQ%3D50%3BFQ%3D-280%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold890 SAMTools SNP 149051 149051 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D231%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C5%2C99%2C121%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 149383 149383 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C6%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00082%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 149724 149724 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C5%2C120%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 149740 149740 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C139%3BMQ%3D50%3BFQ%3D28%3BPV4%3D6.9e-06%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C55:58 scaffold890 SAMTools SNP 149810 149810 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold890 SAMTools SNP 150539 150539 53.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold890 SAMTools SNP 153108 153108 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.14%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C101:99 scaffold890 SAMTools SNP 153351 153351 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C26%2C0%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C120:99 scaffold890 SAMTools SNP 153384 153384 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C110:99 scaffold890 SAMTools SNP 161199 161199 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 167849 167849 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.5%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C243:99 scaffold890 SAMTools SNP 167858 167858 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.5%2C0.28%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C245:99 scaffold890 SAMTools SNP 167880 167880 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.3%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C221:99 scaffold890 SAMTools SNP 168203 168203 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C223:99 scaffold890 SAMTools SNP 168252 168252 104 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold890 SAMTools SNP 176487 176487 58 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C24%2C0:45 scaffold890 SAMTools SNP 176496 176496 111 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C4%2C23%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.29%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold890 SAMTools SNP 177610 177610 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 177644 177644 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C331%2C215%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 178196 178196 130 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0302%3BAF1%3D0.5008%3BAC1%3D1%3BDP4%3D4%2C20%2C33%2C2%3BMQ%3D39%3BFQ%3D-4.12%3BPV4%3D7.1e-10%2C1.5e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C25:28 scaffold890 SAMTools SNP 178215 178215 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C18%2C0%2C11%3BMQ%3D27%3BFQ%3D-30%3BPV4%3D0.15%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C3%2C0:6 scaffold890 SAMTools SNP 178615 178615 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D541%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C208%2C333%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 178693 178693 114 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C147%2C15%2C30%3BMQ%3D46%3BFQ%3D117%3BPV4%3D0.86%2C5.2e-24%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold890 SAMTools SNP 181387 181387 48 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D580%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D104%2C15%2C441%2C19%3BMQ%3D21%3BFQ%3D-147%3BPV4%3D0.0015%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C120%2C0:99 scaffold890 SAMTools SNP 181416 181416 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D551%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D99%2C13%2C384%2C9%3BMQ%3D23%3BFQ%3D6.98%3BPV4%3D0.00014%2C1%2C0.033%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C33:36 scaffold890 SAMTools SNP 181718 181718 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D627%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D42%2C40%2C169%2C370%3BMQ%3D34%3BFQ%3D-83%3BPV4%3D0.00066%2C1%2C0.0018%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C56%2C0:99 scaffold890 SAMTools SNP 181807 181807 83 . . REF=C;ALT=G,A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C9%2C0%2C117%2C5%2C114:16 scaffold890 SAMTools SNP 182314 182314 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C18%2C0%2C12%3BMQ%3D47%3BFQ%3D59%3BPV4%3D0.072%2C6.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C255:89 scaffold890 SAMTools SNP 182350 182350 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C8%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold890 SAMTools SNP 182620 182620 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C6%2C99%2C40%3BMQ%3D48%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold890 SAMTools SNP 182710 182710 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C130%2C6%2C15%3BMQ%3D46%3BFQ%3D110%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold890 SAMTools SNP 182882 182882 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C88%2C9%2C10%3BMQ%3D46%3BFQ%3D134%3BPV4%3D0.014%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold890 SAMTools SNP 182888 182888 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C19%2C10%2C57%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.00021%2C0.26%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 182933 182933 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C6%2C4%3BMQ%3D38%3BFQ%3D72%3BPV4%3D0.4%2C1%2C0.11%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold890 SAMTools SNP 183041 183041 68 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C7%3BMQ%3D39%3BFQ%3D71%3BPV4%3D1%2C1%2C0.12%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C167:99 scaffold890 SAMTools SNP 183223 183223 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold890 SAMTools SNP 193480 193480 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 193805 193805 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold890 SAMTools SNP 195201 195201 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold890 SAMTools SNP 195906 195906 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 195918 195918 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C26:29 scaffold890 SAMTools SNP 196064 196064 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C1%3BMQ%3D48%3BFQ%3D77%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold890 SAMTools SNP 200171 200171 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold890 SAMTools SNP 200188 200188 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold890 SAMTools SNP 201825 201825 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold890 SAMTools SNP 215220 215220 72.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C17%2C1%2C9%3BMQ%3D18%3BFQ%3D-31%3BPV4%3D0.4%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C4%2C0:7 scaffold890 SAMTools SNP 215236 215236 65.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C6%2C1%2C8%3BMQ%3D19%3BFQ%3D-29%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C2%2C0:5 scaffold890 SAMTools SNP 227842 227842 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C135%2C67%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 228175 228175 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D457%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C65%2C157%2C73%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.12%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 229726 229726 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D609%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C62%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 229873 229873 37.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1128%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C26%2C1%3BMQ%3D50%3BFQ%3D-35%3BPV4%3D1%2C7.7e-08%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C8%2C0:14 scaffold890 SAMTools SNP 229927 229927 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1707%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C5%3BMQ%3D50%3BFQ%3D41.9%3BPV4%3D1%2C0.00014%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C69:72 scaffold890 SAMTools SNP 234178 234178 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold890 SAMTools SNP 235656 235656 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold890 SAMTools SNP 238470 238470 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold890 SAMTools SNP 238876 238876 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold890 SAMTools SNP 241017 241017 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold890 SAMTools SNP 241199 241199 178 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold890 SAMTools SNP 242379 242379 115 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C11%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D8.8e-05%2C0.22%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold890 SAMTools SNP 242382 242382 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C29%2C9%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.00038%2C0.0014%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold890 SAMTools SNP 242412 242412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D0%2C3%2C19%2C14%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.095%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C24:27 scaffold890 SAMTools SNP 243038 243038 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D189%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 243203 243203 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C62%2C33%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 243436 243436 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D68%2C29%2C51%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.27%2C1%2C0.0071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 243849 243849 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C67%2C16%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 244203 244203 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C35%2C4%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.00024%2C0.33%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C254:59 scaffold890 SAMTools SNP 244278 244278 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C15%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C105%2C0:99 scaffold890 SAMTools SNP 244751 244751 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C5%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold890 SAMTools SNP 250151 250151 17.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold890 SAMTools SNP 253225 253225 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C42%2C16%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D3e-07%2C6.1e-15%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold890 SAMTools SNP 253850 253850 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C73%2C20%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold890 SAMTools SNP 257996 257996 116 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C54%2C9%2C35%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.29%2C7.2e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold890 SAMTools SNP 258469 258469 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C27%2C54%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.044%2C8.7e-45%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 262742 262742 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold890 SAMTools SNP 263564 263564 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C27%2C0:51 scaffold890 SAMTools SNP 277045 277045 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C12%2C79%2C10%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.82%2C1.8e-139%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold890 SAMTools SNP 277392 277392 115 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C23%2C0%2C8%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.31%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold890 SAMTools SNP 278165 278165 111 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C1%2C4%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.14%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold890 SAMTools SNP 278172 278172 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold890 SAMTools SNP 278813 278813 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C99%2C0:99 scaffold890 SAMTools SNP 279837 279837 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold890 SAMTools SNP 280249 280249 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 281251 281251 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold890 SAMTools SNP 281332 281332 9.49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold890 SAMTools SNP 282147 282147 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold890 SAMTools SNP 282197 282197 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold890 SAMTools SNP 282225 282225 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold890 SAMTools SNP 282228 282228 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold890 SAMTools SNP 283010 283010 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold890 SAMTools SNP 283663 283663 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 285498 285498 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold890 SAMTools SNP 285730 285730 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold890 SAMTools SNP 285966 285966 45.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold890 SAMTools SNP 285974 285974 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold890 SAMTools SNP 286064 286064 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold890 SAMTools SNP 286200 286200 53.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold890 SAMTools SNP 286422 286422 36.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold890 SAMTools SNP 286847 286847 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold890 SAMTools SNP 297623 297623 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold890 SAMTools SNP 298409 298409 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C0.42%2C1%2C0.00079;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold890 SAMTools SNP 298931 298931 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.43%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold890 SAMTools SNP 299294 299294 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold890 SAMTools SNP 299870 299870 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.46%2C0.013%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C216:58 scaffold890 SAMTools SNP 301349 301349 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C6%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D1%2C1.6e-15%2C0.091%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C169:31 scaffold890 SAMTools SNP 304369 304369 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold890 SAMTools SNP 304989 304989 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C6%2C37%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.00011%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 305425 305425 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C4%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 305473 305473 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C19%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C2.2e-08%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 305821 305821 24 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.51%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold890 SAMTools SNP 305892 305892 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold890 SAMTools SNP 306177 306177 154 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold890 SAMTools SNP 306434 306434 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C0.093%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold890 SAMTools SNP 306445 306445 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.29%2C0.00014%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold890 SAMTools SNP 306460 306460 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C12%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.49%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 307601 307601 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C18%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold890 SAMTools SNP 308390 308390 157 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C202:99 scaffold890 SAMTools SNP 308562 308562 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold890 SAMTools SNP 312360 312360 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C27%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold890 SAMTools SNP 314428 314428 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold890 SAMTools SNP 314518 314518 60 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C0.33%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C38:41 scaffold890 SAMTools SNP 324060 324060 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold890 SAMTools SNP 324066 324066 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold890 SAMTools SNP 374183 374183 102 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold890 SAMTools SNP 374216 374216 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C4%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C170:99 scaffold890 SAMTools SNP 374334 374334 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold890 SAMTools SNP 380787 380787 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold890 SAMTools SNP 384987 384987 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold890 SAMTools SNP 385008 385008 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold890 SAMTools SNP 385561 385561 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold890 SAMTools SNP 385875 385875 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C6%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D0.32%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold890 SAMTools SNP 386213 386213 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold890 SAMTools SNP 390471 390471 12.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold890 SAMTools SNP 390974 390974 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold890 SAMTools SNP 391342 391342 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold890 SAMTools SNP 392541 392541 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold890 SAMTools SNP 392566 392566 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold890 SAMTools SNP 392577 392577 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold890 SAMTools SNP 392631 392631 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold890 SAMTools SNP 396003 396003 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold890 SAMTools SNP 396015 396015 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold890 SAMTools SNP 397004 397004 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold890 SAMTools SNP 397005 397005 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold890 SAMTools SNP 397039 397039 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold890 SAMTools SNP 397305 397305 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold890 SAMTools SNP 398161 398161 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 398380 398380 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold890 SAMTools SNP 398397 398397 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold890 SAMTools SNP 399188 399188 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold890 SAMTools SNP 399300 399300 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 399301 399301 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold890 SAMTools SNP 399757 399757 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold890 SAMTools SNP 399930 399930 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C9.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C254:53 scaffold890 SAMTools SNP 400005 400005 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C24%2C0:45 scaffold890 SAMTools SNP 400396 400396 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold891 SAMTools SNP 798 798 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold891 SAMTools SNP 1006 1006 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold891 SAMTools SNP 1060 1060 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold891 SAMTools SNP 1362 1362 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold891 SAMTools SNP 11592 11592 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C6%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1.6e-12%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C36:39 scaffold891 SAMTools SNP 18487 18487 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold891 SAMTools SNP 19259 19259 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold891 SAMTools SNP 20597 20597 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold891 SAMTools SNP 20610 20610 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold891 SAMTools SNP 20658 20658 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold891 SAMTools SNP 21834 21834 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold891 SAMTools SNP 21878 21878 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.4%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C192:99 scaffold891 SAMTools SNP 22264 22264 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold891 SAMTools SNP 22303 22303 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C8%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold891 SAMTools SNP 22743 22743 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C18%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold891 SAMTools SNP 22752 22752 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C20%3BMQ%3D50%3BFQ%3D-43%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C16%2C0:29 scaffold891 SAMTools SNP 22782 22782 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C31%2C8%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D3.4e-06%2C1%2C1%2C1.2e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold891 SAMTools SNP 26930 26930 39.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold891 SAMTools SNP 27295 27295 80.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C21%2C0:39 scaffold891 SAMTools SNP 27353 27353 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C9%2C0:16 scaffold891 SAMTools SNP 30396 30396 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C24%2C0:45 scaffold891 SAMTools SNP 30422 30422 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C87:36 scaffold891 SAMTools SNP 30593 30593 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold891 SAMTools SNP 30616 30616 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold891 SAMTools SNP 30771 30771 17.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C237:50 scaffold891 SAMTools SNP 30779 30779 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold891 SAMTools SNP 30786 30786 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold891 SAMTools SNP 30787 30787 209 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold891 SAMTools SNP 31035 31035 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold891 SAMTools SNP 31194 31194 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C39%2C0:75 scaffold891 SAMTools SNP 32209 32209 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold891 SAMTools SNP 32626 32626 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C8%2C15%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.11%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C253:99 scaffold891 SAMTools SNP 32767 32767 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.0082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C87:90 scaffold891 SAMTools SNP 32795 32795 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.15%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold891 SAMTools SNP 33416 33416 133 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C13%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.0058%2C4.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold891 SAMTools SNP 33607 33607 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C4%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.69%2C1%2C0.18%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 34194 34194 221 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C6%2C12%2C5%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.045%2C1%2C0.025%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold891 SAMTools SNP 34312 34312 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C61%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C5.8e-38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C125:92 scaffold891 SAMTools SNP 37376 37376 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold891 SAMTools SNP 37382 37382 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold891 SAMTools SNP 44733 44733 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold891 SAMTools SNP 45082 45082 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C21%2C0:39 scaffold891 SAMTools SNP 45085 45085 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C242:60 scaffold891 SAMTools SNP 45106 45106 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold891 SAMTools SNP 45198 45198 27.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C15%2C0:27 scaffold891 SAMTools SNP 48893 48893 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C2%3BMQ%3D47%3BFQ%3D16.1%3BPV4%3D0.11%2C0.00068%2C0.022%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C223:46 scaffold891 SAMTools SNP 48895 48895 29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C4%2C0%3BMQ%3D49%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C232:62 scaffold891 SAMTools SNP 49679 49679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C21%2C17%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.009%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 49767 49767 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C27%2C12%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 50189 50189 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C36%2C11%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 50192 50192 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C26%2C53%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 50950 50950 9.53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold891 SAMTools SNP 51414 51414 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C55%2C22%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0001%2C1%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 51633 51633 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C4%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 52688 52688 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C7%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0098%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold891 SAMTools SNP 52722 52722 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C75%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.0019%2C2.2e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold891 SAMTools SNP 52862 52862 18.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C18%2C0:30 scaffold891 SAMTools SNP 53403 53403 85 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C1%2C13%3BMQ%3D50%3BFQ%3D88%3BPV4%3D4.8e-06%2C4.7e-09%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold891 SAMTools SNP 53759 53759 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C6%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold891 SAMTools SNP 53761 53761 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C19%2C6%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.086%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold891 SAMTools SNP 53788 53788 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C0%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.33%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold891 SAMTools SNP 55479 55479 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C41%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold891 SAMTools SNP 102570 102570 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold891 SAMTools SNP 102802 102802 161 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold891 SAMTools SNP 103185 103185 161 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold891 SAMTools SNP 103477 103477 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold891 SAMTools SNP 103490 103490 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold891 SAMTools SNP 103502 103502 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold891 SAMTools SNP 104734 104734 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C12%2C0:21 scaffold891 SAMTools SNP 105302 105302 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold891 SAMTools SNP 106411 106411 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold891 SAMTools SNP 107279 107279 24 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C24%2C0:42 scaffold891 SAMTools SNP 126627 126627 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold891 SAMTools SNP 155196 155196 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold891 SAMTools SNP 155554 155554 55 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold891 SAMTools SNP 155574 155574 169 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold891 SAMTools SNP 156786 156786 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold891 SAMTools SNP 181673 181673 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold891 SAMTools SNP 181680 181680 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold891 SAMTools SNP 191492 191492 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.56%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold891 SAMTools SNP 195198 195198 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold891 SAMTools SNP 195928 195928 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C55:58 scaffold891 SAMTools SNP 196007 196007 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold892 SAMTools SNP 1646 1646 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 17134 17134 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 17203 17203 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold892 SAMTools SNP 24011 24011 205 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.49%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C235:99 scaffold892 SAMTools SNP 27816 27816 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold892 SAMTools SNP 27819 27819 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold892 SAMTools SNP 39706 39706 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C15%2C0:27 scaffold892 SAMTools SNP 40814 40814 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C33%2C0:63 scaffold892 SAMTools SNP 40874 40874 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 40883 40883 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 41456 41456 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold892 SAMTools SNP 41844 41844 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold892 SAMTools SNP 41896 41896 41.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold892 SAMTools SNP 42396 42396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold892 SAMTools SNP 42444 42444 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold892 SAMTools SNP 42498 42498 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold892 SAMTools SNP 42501 42501 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold892 SAMTools SNP 42925 42925 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold892 SAMTools SNP 44746 44746 171 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C23%2C0%2C12%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold892 SAMTools SNP 44865 44865 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C0.15%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C186:99 scaffold892 SAMTools SNP 45043 45043 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C6%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C234:99 scaffold892 SAMTools SNP 45407 45407 6.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold892 SAMTools SNP 45859 45859 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0023%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold892 SAMTools SNP 46134 46134 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold892 SAMTools SNP 46335 46335 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold892 SAMTools SNP 48601 48601 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.074%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold892 SAMTools SNP 49620 49620 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold892 SAMTools SNP 50233 50233 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold892 SAMTools SNP 50296 50296 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold892 SAMTools SNP 50603 50603 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold892 SAMTools SNP 51807 51807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 51927 51927 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 52292 52292 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 53214 53214 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold892 SAMTools SNP 53223 53223 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 53232 53232 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 53493 53493 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold892 SAMTools SNP 53667 53667 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 53718 53718 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold892 SAMTools SNP 55411 55411 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C20:23 scaffold892 SAMTools SNP 58969 58969 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold892 SAMTools SNP 58970 58970 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C63:66 scaffold892 SAMTools SNP 58981 58981 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C147:77 scaffold892 SAMTools SNP 59748 59748 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C154:31 scaffold892 SAMTools SNP 60531 60531 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold892 SAMTools SNP 60980 60980 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold892 SAMTools SNP 61344 61344 49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.11%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C158:82 scaffold892 SAMTools SNP 61643 61643 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.049%2C0.27%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold892 SAMTools SNP 62645 62645 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold892 SAMTools SNP 62962 62962 80 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold892 SAMTools SNP 62972 62972 213 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C152:99 scaffold892 SAMTools SNP 63025 63025 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.00023%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold892 SAMTools SNP 63103 63103 61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C153:94 scaffold892 SAMTools SNP 63133 63133 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.21%2C0.03%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold892 SAMTools SNP 65766 65766 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold892 SAMTools SNP 65847 65847 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C192:99 scaffold892 SAMTools SNP 66209 66209 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C17%2C5%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.18%2C0.0093%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C68:71 scaffold892 SAMTools SNP 66768 66768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold892 SAMTools SNP 67182 67182 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold892 SAMTools SNP 67239 67239 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold892 SAMTools SNP 67433 67433 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0100%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.051%2C0.0093%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold892 SAMTools SNP 67656 67656 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold892 SAMTools SNP 67746 67746 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 67806 67806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold892 SAMTools SNP 68106 68106 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C23%2C3%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.077%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold892 SAMTools SNP 68144 68144 23 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.21%2C0.076%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold892 SAMTools SNP 68250 68250 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold892 SAMTools SNP 68955 68955 169 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold892 SAMTools SNP 68976 68976 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 68988 68988 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold892 SAMTools SNP 69084 69084 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold892 SAMTools SNP 69150 69150 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold892 SAMTools SNP 69162 69162 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold892 SAMTools SNP 70290 70290 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold892 SAMTools SNP 70299 70299 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold892 SAMTools SNP 70303 70303 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold892 SAMTools SNP 70743 70743 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C245:99 scaffold892 SAMTools SNP 70749 70749 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.17%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C99:99 scaffold892 SAMTools SNP 70755 70755 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.061%2C0.22%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C243:99 scaffold892 SAMTools SNP 70791 70791 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold892 SAMTools SNP 71319 71319 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold892 SAMTools SNP 71363 71363 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold892 SAMTools SNP 71977 71977 134 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.43%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C231:99 scaffold892 SAMTools SNP 72010 72010 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C227:74 scaffold892 SAMTools SNP 72016 72016 47 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C230:80 scaffold892 SAMTools SNP 72186 72186 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C13%2C7%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.074%2C2.2e-06%2C1%2C4.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold892 SAMTools SNP 72225 72225 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C28%2C8%2C13%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.00045%2C1%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C250:99 scaffold892 SAMTools SNP 72246 72246 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold892 SAMTools SNP 72839 72839 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C21%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C18:21 scaffold892 SAMTools SNP 72911 72911 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 75199 75199 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold892 SAMTools SNP 75208 75208 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold892 SAMTools SNP 75322 75322 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 75361 75361 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C7%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C67:70 scaffold892 SAMTools SNP 75595 75595 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.57%2C0.31%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold892 SAMTools SNP 75670 75670 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold892 SAMTools SNP 75706 75706 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C11%2C6%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.0059%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C156:99 scaffold892 SAMTools SNP 76109 76109 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold892 SAMTools SNP 76214 76214 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 76220 76220 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 79513 79513 45.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold892 SAMTools SNP 79516 79516 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold892 SAMTools SNP 79893 79893 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold892 SAMTools SNP 79905 79905 56 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D59%3BPV4%3D1%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C110:89 scaffold892 SAMTools SNP 80352 80352 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold892 SAMTools SNP 80364 80364 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C4%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold892 SAMTools SNP 80460 80460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C23%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold892 SAMTools SNP 80478 80478 145 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold892 SAMTools SNP 81579 81579 193 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.42%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold892 SAMTools SNP 81940 81940 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C6%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C207:99 scaffold892 SAMTools SNP 85946 85946 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold892 SAMTools SNP 85949 85949 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold892 SAMTools SNP 86487 86487 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold892 SAMTools SNP 87100 87100 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold892 SAMTools SNP 90261 90261 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.13%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold892 SAMTools SNP 91140 91140 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold892 SAMTools SNP 95958 95958 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold892 SAMTools SNP 95973 95973 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.25%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold892 SAMTools SNP 95985 95985 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold892 SAMTools SNP 96012 96012 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 96235 96235 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 96241 96241 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 96632 96632 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold892 SAMTools SNP 96659 96659 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold892 SAMTools SNP 96689 96689 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold892 SAMTools SNP 97179 97179 169 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold892 SAMTools SNP 97227 97227 53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold892 SAMTools SNP 97289 97289 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 98581 98581 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold892 SAMTools SNP 98583 98583 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold892 SAMTools SNP 100780 100780 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold892 SAMTools SNP 100793 100793 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold892 SAMTools SNP 101123 101123 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 101126 101126 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 102405 102405 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold892 SAMTools SNP 103703 103703 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C141:46 scaffold892 SAMTools SNP 104400 104400 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.29%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold892 SAMTools SNP 105020 105020 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold892 SAMTools SNP 105038 105038 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold892 SAMTools SNP 105450 105450 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 105826 105826 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold892 SAMTools SNP 105833 105833 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold892 SAMTools SNP 105841 105841 52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold892 SAMTools SNP 106355 106355 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.081%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold892 SAMTools SNP 106358 106358 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold892 SAMTools SNP 106373 106373 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C20%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold892 SAMTools SNP 107118 107118 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C11%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.38%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C140:99 scaffold893 SAMTools SNP 818 818 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold893 SAMTools SNP 6851 6851 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold893 SAMTools SNP 7045 7045 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 7075 7075 28.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold893 SAMTools SNP 35898 35898 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D114%2C9%2C37%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold893 SAMTools SNP 36209 36209 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C287%2C11%2C131%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold893 SAMTools SNP 36229 36229 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C31%2C326%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 36453 36453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold893 SAMTools SNP 36460 36460 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold893 SAMTools SNP 37928 37928 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 37934 37934 172 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold893 SAMTools SNP 37951 37951 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C20%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold893 SAMTools SNP 38072 38072 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D185%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C143%2C21%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 39347 39347 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D312%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C80%2C222%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 39362 39362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D290%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C273%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.38%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 43195 43195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C126%2C107%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 43201 43201 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D433%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D222%2C96%2C95%2C20%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0096%2C1.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold893 SAMTools SNP 43647 43647 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D450%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C100%2C135%2C211%3BMQ%3D49%3BFQ%3D184%3BPV4%3D4e-14%2C0.00015%2C0.019%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C211:99 scaffold893 SAMTools SNP 45965 45965 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C53%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold893 SAMTools SNP 45983 45983 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C24%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold893 SAMTools SNP 46004 46004 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold893 SAMTools SNP 46069 46069 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1000%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C945%2C39%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold893 SAMTools SNP 48354 48354 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0054%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 69983 69983 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 70321 70321 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold893 SAMTools SNP 75547 75547 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold893 SAMTools SNP 75586 75586 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold893 SAMTools SNP 75609 75609 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold893 SAMTools SNP 87900 87900 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold893 SAMTools SNP 89263 89263 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold893 SAMTools SNP 89514 89514 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold893 SAMTools SNP 89560 89560 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 89742 89742 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold893 SAMTools SNP 89764 89764 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold893 SAMTools SNP 90498 90498 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.46%2C5.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C104:47 scaffold893 SAMTools SNP 90543 90543 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0330%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.21%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold893 SAMTools SNP 91631 91631 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.16%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold893 SAMTools SNP 92361 92361 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C1%2C1%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold893 SAMTools SNP 93271 93271 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold893 SAMTools SNP 93306 93306 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold893 SAMTools SNP 93373 93373 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C99:36 scaffold893 SAMTools SNP 93540 93540 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold893 SAMTools SNP 93602 93602 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold893 SAMTools SNP 94043 94043 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0022%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold893 SAMTools SNP 94678 94678 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold893 SAMTools SNP 94764 94764 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold893 SAMTools SNP 94964 94964 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 95008 95008 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold893 SAMTools SNP 96881 96881 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold893 SAMTools SNP 97945 97945 91.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold893 SAMTools SNP 98025 98025 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C12%2C0:21 scaffold893 SAMTools SNP 121470 121470 192 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C2%2C21%2C1%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold893 SAMTools SNP 124291 124291 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C51%2C10%2C60%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C2.6e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold893 SAMTools SNP 131096 131096 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C75%2C1%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold893 SAMTools SNP 133584 133584 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 8740 8740 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold894 SAMTools SNP 9660 9660 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold894 SAMTools SNP 9679 9679 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold894 SAMTools SNP 9843 9843 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C0.0023%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C44:39 scaffold894 SAMTools SNP 10435 10435 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold894 SAMTools SNP 25312 25312 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 28613 28613 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C83:36 scaffold894 SAMTools SNP 33538 33538 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold894 SAMTools SNP 33594 33594 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold894 SAMTools SNP 55429 55429 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold894 SAMTools SNP 55435 55435 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold894 SAMTools SNP 55896 55896 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 56841 56841 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold894 SAMTools SNP 56887 56887 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 57036 57036 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 57521 57521 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 58071 58071 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold894 SAMTools SNP 58806 58806 25.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold894 SAMTools SNP 59194 59194 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C48%2C0:93 scaffold894 SAMTools SNP 59228 59228 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C31%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C108%2C0:99 scaffold894 SAMTools SNP 59439 59439 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold894 SAMTools SNP 59458 59458 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold894 SAMTools SNP 61476 61476 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.59%2C0.092%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold894 SAMTools SNP 61486 61486 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold894 SAMTools SNP 61495 61495 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold894 SAMTools SNP 62044 62044 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold894 SAMTools SNP 63169 63169 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C9.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold894 SAMTools SNP 63329 63329 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold894 SAMTools SNP 63783 63783 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C2%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C211:99 scaffold894 SAMTools SNP 64406 64406 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold894 SAMTools SNP 64410 64410 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C253:99 scaffold894 SAMTools SNP 64469 64469 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C6%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C183:99 scaffold894 SAMTools SNP 65499 65499 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold894 SAMTools SNP 66352 66352 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold894 SAMTools SNP 66606 66606 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C17%2C1%2C3%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.0012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold894 SAMTools SNP 67203 67203 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.14%2C3.7e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold894 SAMTools SNP 67656 67656 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C11:14 scaffold894 SAMTools SNP 68690 68690 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 69209 69209 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C234:99 scaffold894 SAMTools SNP 70451 70451 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C21%2C6%2C12%3BMQ%3D49%3BFQ%3D219%3BPV4%3D0.033%2C1.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold894 SAMTools SNP 70553 70553 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D45%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C38:41 scaffold894 SAMTools SNP 71517 71517 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold894 SAMTools SNP 71520 71520 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold894 SAMTools SNP 74848 74848 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold894 SAMTools SNP 75609 75609 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold894 SAMTools SNP 75614 75614 13.9 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold894 SAMTools SNP 117079 117079 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold894 SAMTools SNP 118134 118134 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.33%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C176:99 scaffold894 SAMTools SNP 118150 118150 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold894 SAMTools SNP 118245 118245 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold894 SAMTools SNP 118266 118266 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold894 SAMTools SNP 119988 119988 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C9%2C0%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.47%2C8.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold894 SAMTools SNP 120003 120003 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C75%2C0:99 scaffold894 SAMTools SNP 122011 122011 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold894 SAMTools SNP 122059 122059 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 122488 122488 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold894 SAMTools SNP 124069 124069 27 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.043%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold894 SAMTools SNP 124279 124279 45 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D47.6%3BPV4%3D1%2C3.5e-16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C85:78 scaffold894 SAMTools SNP 124316 124316 29 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C88:62 scaffold894 SAMTools SNP 124378 124378 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold894 SAMTools SNP 125057 125057 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.29%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold894 SAMTools SNP 125088 125088 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C1%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.37%2C0.085%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold894 SAMTools SNP 125733 125733 62 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C23%2C4%2C8%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C2.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold894 SAMTools SNP 128429 128429 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold894 SAMTools SNP 128440 128440 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold894 SAMTools SNP 128459 128459 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C33%2C0:63 scaffold894 SAMTools SNP 129179 129179 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C4%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C186:99 scaffold894 SAMTools SNP 129664 129664 50.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold894 SAMTools SNP 129716 129716 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold894 SAMTools SNP 132142 132142 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold894 SAMTools SNP 132164 132164 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold894 SAMTools SNP 133537 133537 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C21%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.11%2C2.1e-29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold894 SAMTools SNP 133603 133603 31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C8%2C8%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C4.7e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold894 SAMTools SNP 133968 133968 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold894 SAMTools SNP 134074 134074 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C8.9e-09%2C1%2C7.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C74:33 scaffold894 SAMTools SNP 141178 141178 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold894 SAMTools SNP 147264 147264 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold894 SAMTools SNP 147512 147512 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C38%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold894 SAMTools SNP 147760 147760 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C38%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold894 SAMTools SNP 147798 147798 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C61%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold894 SAMTools SNP 148089 148089 39 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C230:72 scaffold894 SAMTools SNP 148209 148209 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold894 SAMTools SNP 149364 149364 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold894 SAMTools SNP 150228 150228 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.0038%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold894 SAMTools SNP 150627 150627 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold894 SAMTools SNP 155076 155076 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 173237 173237 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 173259 173259 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold894 SAMTools SNP 173267 173267 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 173288 173288 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C88:42 scaffold894 SAMTools SNP 173297 173297 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 174908 174908 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C232:41 scaffold894 SAMTools SNP 174910 174910 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.19%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold894 SAMTools SNP 175658 175658 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold894 SAMTools SNP 175707 175707 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 56696 56696 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 56765 56765 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 56809 56809 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 83548 83548 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold895 SAMTools SNP 94126 94126 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 124787 124787 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C231:44 scaffold895 SAMTools SNP 125175 125175 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold895 SAMTools SNP 125196 125196 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C13%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold895 SAMTools SNP 125273 125273 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold895 SAMTools SNP 127057 127057 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold895 SAMTools SNP 127609 127609 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold895 SAMTools SNP 128469 128469 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold895 SAMTools SNP 128516 128516 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold895 SAMTools SNP 128574 128574 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 129081 129081 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold895 SAMTools SNP 129125 129125 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold895 SAMTools SNP 129411 129411 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold895 SAMTools SNP 129658 129658 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold895 SAMTools SNP 134466 134466 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold895 SAMTools SNP 134469 134469 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold895 SAMTools SNP 134496 134496 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold895 SAMTools SNP 134529 134529 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold895 SAMTools SNP 136294 136294 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 138127 138127 175 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D44%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold895 SAMTools SNP 138792 138792 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D45%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold895 SAMTools SNP 138837 138837 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C27%2C0:51 scaffold895 SAMTools SNP 138912 138912 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 140838 140838 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold895 SAMTools SNP 141095 141095 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold895 SAMTools SNP 141178 141178 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:194%2C30%2C0:57 scaffold895 SAMTools SNP 141193 141193 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold895 SAMTools SNP 142868 142868 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold895 SAMTools SNP 142872 142872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C3%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold895 SAMTools SNP 143787 143787 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C15%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold895 SAMTools SNP 143817 143817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C121:99 scaffold895 SAMTools SNP 144083 144083 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold895 SAMTools SNP 144108 144108 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C4%2C13%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.62%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold895 SAMTools SNP 144609 144609 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C0.2%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C222:99 scaffold895 SAMTools SNP 144663 144663 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold895 SAMTools SNP 144686 144686 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold895 SAMTools SNP 144955 144955 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.23%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C226:99 scaffold895 SAMTools SNP 144967 144967 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C234:99 scaffold895 SAMTools SNP 144979 144979 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C241:99 scaffold895 SAMTools SNP 145003 145003 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C24%2C0:45 scaffold895 SAMTools SNP 145063 145063 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold895 SAMTools SNP 145728 145728 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold895 SAMTools SNP 145789 145789 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.46%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C189:99 scaffold895 SAMTools SNP 146569 146569 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.089%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold895 SAMTools SNP 212930 212930 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold895 SAMTools SNP 213029 213029 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold895 SAMTools SNP 213038 213038 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold895 SAMTools SNP 213354 213354 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold895 SAMTools SNP 219057 219057 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold895 SAMTools SNP 219074 219074 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C0%2C79%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.16%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold895 SAMTools SNP 219106 219106 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C172%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold895 SAMTools SNP 220172 220172 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C65%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold895 SAMTools SNP 220184 220184 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C65%2C0%2C24%3BMQ%3D50%3BFQ%3D157%3BPV4%3D1%2C0.37%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C248:99 scaffold895 SAMTools SNP 221025 221025 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.27%2C1%2C1e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C157:73 scaffold895 SAMTools SNP 224834 224834 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold895 SAMTools SNP 224849 224849 175 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C69:72 scaffold895 SAMTools SNP 225164 225164 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.032%2C1%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold895 SAMTools SNP 225168 225168 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C20%2C1%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.032%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C71:74 scaffold895 SAMTools SNP 225196 225196 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C239:99 scaffold895 SAMTools SNP 225246 225246 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold895 SAMTools SNP 225964 225964 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold895 SAMTools SNP 226314 226314 32.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold895 SAMTools SNP 226366 226366 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold895 SAMTools SNP 226600 226600 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.37%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C36:39 scaffold895 SAMTools SNP 226627 226627 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold895 SAMTools SNP 226660 226660 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C18%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold895 SAMTools SNP 226699 226699 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.42%2C0.42%2C1%2C5.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold895 SAMTools SNP 230810 230810 96.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C12%2C0:21 scaffold895 SAMTools SNP 231069 231069 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold895 SAMTools SNP 231382 231382 67.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C6%2C0:10 scaffold895 SAMTools SNP 231410 231410 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D-46%3BPV4%3D0.043%2C1%2C1%2C2.9e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C19%2C0:35 scaffold895 SAMTools SNP 233036 233036 104 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C14%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C0.00047%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold895 SAMTools SNP 233278 233278 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.12%2C0.11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold895 SAMTools SNP 233308 233308 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C21%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.015%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold895 SAMTools SNP 233330 233330 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C12%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold895 SAMTools SNP 234327 234327 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C12%2C23%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.081%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold895 SAMTools SNP 235968 235968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold895 SAMTools SNP 235989 235989 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold895 SAMTools SNP 236178 236178 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.18%2C0.037%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold895 SAMTools SNP 236208 236208 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.07%2C1%2C1%2C4.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold895 SAMTools SNP 236242 236242 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.017%2C0.16%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold895 SAMTools SNP 236571 236571 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C7%2C39%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1.1e-19%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold895 SAMTools SNP 237768 237768 148 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C9%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.39%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C239:99 scaffold895 SAMTools SNP 237780 237780 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C33%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold895 SAMTools SNP 238230 238230 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold895 SAMTools SNP 239774 239774 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold895 SAMTools SNP 239800 239800 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold895 SAMTools SNP 239849 239849 224 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C57:60 scaffold895 SAMTools SNP 240942 240942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold895 SAMTools SNP 240984 240984 130 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold895 SAMTools SNP 240990 240990 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold895 SAMTools SNP 241020 241020 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold895 SAMTools SNP 241026 241026 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C9%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C60:63 scaffold895 SAMTools SNP 241947 241947 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold895 SAMTools SNP 241961 241961 94.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C21%2C0:39 scaffold895 SAMTools SNP 242081 242081 26 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.023%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold895 SAMTools SNP 242085 242085 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.21%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold895 SAMTools SNP 242755 242755 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold895 SAMTools SNP 242900 242900 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 242919 242919 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 242948 242948 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold895 SAMTools SNP 243306 243306 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold895 SAMTools SNP 243307 243307 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C2.3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C174:71 scaffold895 SAMTools SNP 243357 243357 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C27%2C1%3BMQ%3D50%3BFQ%3D-64%3BPV4%3D1%2C0.29%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C37%2C0:71 scaffold895 SAMTools SNP 244220 244220 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.057%2C0.024%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold895 SAMTools SNP 245045 245045 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold895 SAMTools SNP 245093 245093 96 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.29%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold895 SAMTools SNP 248391 248391 207 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.27%2C0.13%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C197:99 scaffold895 SAMTools SNP 249562 249562 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold895 SAMTools SNP 249601 249601 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.055%2C1.3e-06%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C109:99 scaffold895 SAMTools SNP 249625 249625 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.018%2C4.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C142:51 scaffold895 SAMTools SNP 249766 249766 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold895 SAMTools SNP 250329 250329 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C6%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold895 SAMTools SNP 250360 250360 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.25%2C0.046%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold895 SAMTools SNP 251764 251764 128 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D24%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C51%2C0:99 scaffold895 SAMTools SNP 251794 251794 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C20%2C3%3BMQ%3D34%3BFQ%3D-49%3BPV4%3D0.17%2C0.4%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C22%2C0:41 scaffold895 SAMTools SNP 253099 253099 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D24%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C39%2C0:75 scaffold895 SAMTools SNP 253117 253117 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D21%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C36%2C0:69 scaffold896 SAMTools SNP 61545 61545 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold896 SAMTools SNP 69756 69756 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 69763 69763 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 74253 74253 97 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0342%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.0019%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C82:85 scaffold896 SAMTools SNP 76092 76092 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C5:8 scaffold896 SAMTools SNP 76137 76137 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.08%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold896 SAMTools SNP 76155 76155 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.0013%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold896 SAMTools SNP 79098 79098 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold896 SAMTools SNP 79989 79989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D115%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 80210 80210 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C43%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.42%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 80306 80306 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C41%2C3%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.087%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold896 SAMTools SNP 86026 86026 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold896 SAMTools SNP 86596 86596 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.53%2C0.0028%2C1%2C0.0095;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold896 SAMTools SNP 86599 86599 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold896 SAMTools SNP 90614 90614 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C5%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 90626 90626 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C15%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold896 SAMTools SNP 91581 91581 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C12%3BMQ%3D21%3BFQ%3D28%3BPV4%3D1%2C0.33%2C0.4%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C115:58 scaffold896 SAMTools SNP 94379 94379 90 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C20%2C22%2C27%3BMQ%3D30%3BFQ%3D93%3BPV4%3D0.49%2C6.9e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C166:99 scaffold896 SAMTools SNP 94421 94421 152 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C31%2C11%2C14%3BMQ%3D32%3BFQ%3D155%3BPV4%3D0.63%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C202:99 scaffold896 SAMTools SNP 98163 98163 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 98363 98363 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.16%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold896 SAMTools SNP 98453 98453 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 99025 99025 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C11%2C22%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 99043 99043 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C16%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold896 SAMTools SNP 99058 99058 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.07%2C0.036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 105296 105296 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold896 SAMTools SNP 105303 105303 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold896 SAMTools SNP 105343 105343 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.41%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold896 SAMTools SNP 105469 105469 13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold896 SAMTools SNP 110006 110006 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C224:99 scaffold896 SAMTools SNP 110036 110036 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold896 SAMTools SNP 111466 111466 125 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold896 SAMTools SNP 112111 112111 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold896 SAMTools SNP 120279 120279 89 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C217:99 scaffold896 SAMTools SNP 120288 120288 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C165:99 scaffold896 SAMTools SNP 120742 120742 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold896 SAMTools SNP 120813 120813 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C29%2C12%2C18%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.00012%2C1.3e-51%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C248:99 scaffold896 SAMTools SNP 120860 120860 62.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C18%2C0:33 scaffold896 SAMTools SNP 121158 121158 176 . . REF=C;ALT=T,A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C35%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C129%2C0%2C207%2C111%2C204:99 scaffold896 SAMTools SNP 121277 121277 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C9%2C19%2C2%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.045%2C8e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold896 SAMTools SNP 121728 121728 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C24%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C99%2C0:99 scaffold896 SAMTools SNP 121866 121866 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold896 SAMTools SNP 122199 122199 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 122214 122214 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 122219 122219 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 139451 139451 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 139526 139526 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 139553 139553 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 140167 140167 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 140173 140173 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 140218 140218 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 144250 144250 7.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold896 SAMTools SNP 144290 144290 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 186424 186424 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0096%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 186428 186428 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 186431 186431 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 189083 189083 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 189116 189116 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 189395 189395 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 276302 276302 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold896 SAMTools SNP 277193 277193 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 331633 331633 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C45%2C0:87 scaffold896 SAMTools SNP 331696 331696 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold896 SAMTools SNP 331702 331702 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.055%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C101:99 scaffold896 SAMTools SNP 332139 332139 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold896 SAMTools SNP 332174 332174 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C15%2C15%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.061%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold896 SAMTools SNP 332213 332213 179 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C38%2C5%3BMQ%3D50%3BFQ%3D-33%3BPV4%3D0.0037%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C6%2C0:10 scaffold896 SAMTools SNP 332233 332233 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.27%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold896 SAMTools SNP 333493 333493 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C20%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C227:99 scaffold896 SAMTools SNP 333503 333503 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold896 SAMTools SNP 333515 333515 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold896 SAMTools SNP 339516 339516 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 340420 340420 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 342780 342780 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0040%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold896 SAMTools SNP 347027 347027 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C8%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C0.28%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold896 SAMTools SNP 347036 347036 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold896 SAMTools SNP 347396 347396 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold896 SAMTools SNP 347435 347435 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold896 SAMTools SNP 347581 347581 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold896 SAMTools SNP 347614 347614 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.43%2C0.049%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C183:50 scaffold896 SAMTools SNP 347630 347630 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold896 SAMTools SNP 347634 347634 146 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.54%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold896 SAMTools SNP 349269 349269 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C7%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold896 SAMTools SNP 349322 349322 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 349667 349667 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold896 SAMTools SNP 349691 349691 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 349697 349697 163 . . REF=C;ALT=T,G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C47%2C32%2C189%2C0%2C186:27 scaffold896 SAMTools SNP 349702 349702 20 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.53%2C0.34%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold896 SAMTools SNP 350839 350839 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C6%2C39%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 355074 355074 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 355464 355464 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold896 SAMTools SNP 355989 355989 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 356192 356192 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C8%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 357798 357798 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold896 SAMTools SNP 357825 357825 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold896 SAMTools SNP 357858 357858 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold896 SAMTools SNP 364913 364913 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C33%2C0:63 scaffold896 SAMTools SNP 364928 364928 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold896 SAMTools SNP 365638 365638 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold896 SAMTools SNP 366860 366860 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold896 SAMTools SNP 366877 366877 109 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold896 SAMTools SNP 374481 374481 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C24%2C0:43 scaffold896 SAMTools SNP 377336 377336 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 377352 377352 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0022%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 380143 380143 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 392512 392512 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0109%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold896 SAMTools SNP 395743 395743 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 407463 407463 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold896 SAMTools SNP 411877 411877 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0225%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold896 SAMTools SNP 417374 417374 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 420714 420714 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C124:81 scaffold896 SAMTools SNP 421272 421272 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold896 SAMTools SNP 421330 421330 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold896 SAMTools SNP 421638 421638 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D0.11%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold896 SAMTools SNP 422786 422786 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 426667 426667 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold896 SAMTools SNP 426940 426940 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.3%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold896 SAMTools SNP 426957 426957 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold896 SAMTools SNP 431323 431323 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 431579 431579 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold896 SAMTools SNP 434472 434472 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold896 SAMTools SNP 439703 439703 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 439739 439739 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold896 SAMTools SNP 439742 439742 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold896 SAMTools SNP 440932 440932 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 440999 440999 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0073%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold896 SAMTools SNP 441758 441758 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C173:79 scaffold896 SAMTools SNP 441775 441775 49 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold896 SAMTools SNP 441998 441998 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold896 SAMTools SNP 442017 442017 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold896 SAMTools SNP 442754 442754 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold896 SAMTools SNP 443008 443008 19.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C3%2C0:6 scaffold896 SAMTools SNP 444863 444863 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold896 SAMTools SNP 444911 444911 136 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D1%2C1%2C1%2C5.8e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C222:99 scaffold896 SAMTools SNP 450201 450201 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C216:99 scaffold896 SAMTools SNP 451545 451545 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold896 SAMTools SNP 451619 451619 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 451631 451631 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 453659 453659 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 453663 453663 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 453705 453705 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 454959 454959 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold896 SAMTools SNP 460085 460085 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold896 SAMTools SNP 460115 460115 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0185%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold896 SAMTools SNP 460800 460800 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 460880 460880 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold896 SAMTools SNP 461064 461064 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold896 SAMTools SNP 461066 461066 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold896 SAMTools SNP 461124 461124 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 462127 462127 53 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 462394 462394 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C164:99 scaffold896 SAMTools SNP 462411 462411 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold896 SAMTools SNP 462490 462490 41 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.44%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold896 SAMTools SNP 462985 462985 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold896 SAMTools SNP 463188 463188 5.44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold896 SAMTools SNP 463263 463263 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold896 SAMTools SNP 463764 463764 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold896 SAMTools SNP 463835 463835 3.41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold896 SAMTools SNP 464036 464036 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:107%2C9%2C0:16 scaffold896 SAMTools SNP 482560 482560 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 484042 484042 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 486789 486789 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold896 SAMTools SNP 486791 486791 11.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold896 SAMTools SNP 490164 490164 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold896 SAMTools SNP 492533 492533 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold896 SAMTools SNP 492557 492557 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold896 SAMTools SNP 492628 492628 5.46 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold896 SAMTools SNP 492629 492629 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C218:94 scaffold896 SAMTools SNP 493582 493582 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C2%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold896 SAMTools SNP 495966 495966 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 495979 495979 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0112%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:118%2C9%2C0:16 scaffold896 SAMTools SNP 501549 501549 3.55 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold896 SAMTools SNP 506459 506459 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.17%2C0.11%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C156:99 scaffold896 SAMTools SNP 508077 508077 20 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold896 SAMTools SNP 509419 509419 51 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D54%3BPV4%3D1%2C0.31%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C150:84 scaffold896 SAMTools SNP 510158 510158 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold896 SAMTools SNP 512843 512843 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 512889 512889 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 512930 512930 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 513009 513009 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold896 SAMTools SNP 514385 514385 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D114%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C250:99 scaffold896 SAMTools SNP 514427 514427 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold896 SAMTools SNP 515075 515075 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold896 SAMTools SNP 515953 515953 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C0%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C41:42 scaffold896 SAMTools SNP 515993 515993 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 516161 516161 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 516188 516188 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 517267 517267 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold896 SAMTools SNP 521467 521467 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 522536 522536 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold896 SAMTools SNP 522537 522537 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold896 SAMTools SNP 522814 522814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D437%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C79%2C357%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 523222 523222 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D602%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C340%2C10%2C240%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.3%2C1%2C8.7e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 523238 523238 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D504%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C326%2C1%2C162%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C0.089%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold896 SAMTools SNP 523362 523362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold896 SAMTools SNP 523363 523363 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold896 SAMTools SNP 523523 523523 203 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C26%2C0%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold896 SAMTools SNP 523739 523739 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0449%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C80%2C4%2C39%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.5e-48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold896 SAMTools SNP 524107 524107 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C9%2C15%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1.4e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 524356 524356 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C96%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 524530 524530 98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C74%2C26%2C0%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1.1e-13%2C1%2C1%2C8.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold896 SAMTools SNP 527090 527090 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D325%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C49%2C78%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 527671 527671 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C23%2C12%2C1%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.023%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold896 SAMTools SNP 528614 528614 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C28%2C54%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 529077 529077 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D315%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C117%2C44%2C125%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C0.18%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 529320 529320 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C95%2C22%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 531716 531716 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D76%2C74%2C105%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.073%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 532661 532661 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D364%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C125%2C55%2C103%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C3.4e-10%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 532891 532891 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D516%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D199%2C73%2C91%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 533256 533256 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D296%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C114%2C34%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 533806 533806 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C87%2C8%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 533809 533809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D230%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C126%2C16%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 534457 534457 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D777%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C423%2C6%2C325%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 534683 534683 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D369%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C357%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold896 SAMTools SNP 534707 534707 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D282%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D132%2C11%2C135%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold896 SAMTools SNP 535161 535161 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D813%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D306%2C103%2C10%2C63%3BMQ%3D50%3BFQ%3D51%3BPV4%3D2.2e-23%2C1%2C1%2C3.6e-20;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold896 SAMTools SNP 540022 540022 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold896 SAMTools SNP 545095 545095 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold896 SAMTools SNP 546214 546214 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 546290 546290 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold896 SAMTools SNP 549239 549239 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 553011 553011 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold896 SAMTools SNP 553097 553097 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold896 SAMTools SNP 553804 553804 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C2%3BMQ%3D46%3BFQ%3D92.3%3BPV4%3D1%2C0.31%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C124:99 scaffold896 SAMTools SNP 564107 564107 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C1%3BMQ%3D35%3BFQ%3D69%3BPV4%3D0.62%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C231:99 scaffold896 SAMTools SNP 564146 564146 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold896 SAMTools SNP 568131 568131 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0440%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold896 SAMTools SNP 569003 569003 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold896 SAMTools SNP 569136 569136 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 569451 569451 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 569469 569469 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 569710 569710 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold896 SAMTools SNP 569965 569965 53.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold896 SAMTools SNP 570875 570875 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold896 SAMTools SNP 572027 572027 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C0.00015%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C120:46 scaffold896 SAMTools SNP 576634 576634 59.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold896 SAMTools SNP 577395 577395 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold896 SAMTools SNP 577432 577432 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold896 SAMTools SNP 580814 580814 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0374%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D39%3BFQ%3D9.53%3BPV4%3D1%2C0.041%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C36:39 scaffold896 SAMTools SNP 581882 581882 61 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C1%3BMQ%3D48%3BFQ%3D63.5%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C100:93 scaffold896 SAMTools SNP 581939 581939 70 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C24%2C0:45 scaffold896 SAMTools SNP 581981 581981 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold896 SAMTools SNP 582862 582862 30.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold896 SAMTools SNP 591131 591131 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 612071 612071 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 612089 612089 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold896 SAMTools SNP 616146 616146 14.7 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold896 SAMTools SNP 616164 616164 50.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold896 SAMTools SNP 617001 617001 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold896 SAMTools SNP 632796 632796 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0063%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C11%2C3%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.018%2C3.9e-08%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold896 SAMTools SNP 634613 634613 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.11%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold896 SAMTools SNP 640854 640854 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold896 SAMTools SNP 643257 643257 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold896 SAMTools SNP 643353 643353 39.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold896 SAMTools SNP 644586 644586 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold896 SAMTools SNP 644643 644643 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 645515 645515 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold896 SAMTools SNP 648065 648065 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold896 SAMTools SNP 648560 648560 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold896 SAMTools SNP 649111 649111 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C15%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold896 SAMTools SNP 649129 649129 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C16%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold896 SAMTools SNP 649481 649481 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold896 SAMTools SNP 650772 650772 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 651350 651350 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold896 SAMTools SNP 651625 651625 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C5%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold896 SAMTools SNP 653288 653288 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 656498 656498 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D43%3BFQ%3D7.8%3BPV4%3D1%2C0.00089%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C80:34 scaffold896 SAMTools SNP 656753 656753 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold896 SAMTools SNP 661911 661911 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 661914 661914 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold896 SAMTools SNP 661961 661961 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C18%2C0:33 scaffold896 SAMTools SNP 662142 662142 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold896 SAMTools SNP 662927 662927 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold896 SAMTools SNP 664866 664866 98.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold896 SAMTools SNP 665348 665348 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold896 SAMTools SNP 677669 677669 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 693832 693832 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.005%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C234:46 scaffold896 SAMTools SNP 694278 694278 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold896 SAMTools SNP 694300 694300 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C1%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.45%2C1%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold896 SAMTools SNP 697407 697407 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C63%2C14%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1.7e-12%2C3.8e-22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold896 SAMTools SNP 703510 703510 170 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C5%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold896 SAMTools SNP 703543 703543 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.54%2C0.44%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold896 SAMTools SNP 703692 703692 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C230:99 scaffold896 SAMTools SNP 704358 704358 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C185:99 scaffold896 SAMTools SNP 706686 706686 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C8%2C0%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.28%2C1%2C1%2C7.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold896 SAMTools SNP 706693 706693 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.08%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold896 SAMTools SNP 707259 707259 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 750241 750241 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 750462 750462 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 751297 751297 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold896 SAMTools SNP 751853 751853 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold896 SAMTools SNP 752063 752063 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C66%2C0:99 scaffold896 SAMTools SNP 752078 752078 31.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold896 SAMTools SNP 758445 758445 174 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:207%2C24%2C0%2C204%2C12%2C201:45 scaffold896 SAMTools SNP 794540 794540 37 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C39%2C0:71 scaffold896 SAMTools SNP 794912 794912 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold896 SAMTools SNP 795132 795132 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C27%2C0:51 scaffold896 SAMTools SNP 795361 795361 27.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold896 SAMTools SNP 795490 795490 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C11%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold896 SAMTools SNP 796063 796063 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C15%2C10%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.042%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C77:80 scaffold896 SAMTools SNP 796909 796909 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold896 SAMTools SNP 797835 797835 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold896 SAMTools SNP 798141 798141 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold9 SAMTools SNP 10366 10366 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 19160 19160 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold9 SAMTools SNP 19337 19337 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold9 SAMTools SNP 19380 19380 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 20304 20304 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 21939 21939 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold9 SAMTools SNP 22078 22078 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 22656 22656 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 106812 106812 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 107864 107864 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 108117 108117 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold9 SAMTools SNP 108122 108122 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold9 SAMTools SNP 112818 112818 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold9 SAMTools SNP 112824 112824 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold9 SAMTools SNP 112840 112840 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold9 SAMTools SNP 113184 113184 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.17%3BPV4%3D0.33%2C0%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C41:30 scaffold9 SAMTools SNP 113230 113230 202 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C18%2C0%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.053%2C0.25%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C7%2C0:12 scaffold9 SAMTools SNP 114524 114524 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.093%2C0.45%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C254:56 scaffold9 SAMTools SNP 154275 154275 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C3%2C12%3BMQ%3D35%3BFQ%3D89%3BPV4%3D0.43%2C0.031%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C116:99 scaffold9 SAMTools SNP 154383 154383 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D15%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C33%2C0:58 scaffold9 SAMTools SNP 154701 154701 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D17%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C27%2C0:49 scaffold90 SAMTools SNP 11109 11109 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 11124 11124 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 134321 134321 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold90 SAMTools SNP 165428 165428 6.02 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold90 SAMTools SNP 207387 207387 9.31 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold90 SAMTools SNP 211980 211980 8.65 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold90 SAMTools SNP 239628 239628 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 242822 242822 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 242865 242865 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 306972 306972 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 307784 307784 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold90 SAMTools SNP 313096 313096 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 329664 329664 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold90 SAMTools SNP 330377 330377 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold90 SAMTools SNP 335017 335017 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold90 SAMTools SNP 335120 335120 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold90 SAMTools SNP 335164 335164 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C176:31 scaffold90 SAMTools SNP 336246 336246 24 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.43%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C223:57 scaffold90 SAMTools SNP 342631 342631 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold90 SAMTools SNP 389119 389119 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold905 SAMTools SNP 6808 6808 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold905 SAMTools SNP 8834 8834 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C6%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.14%2C1%2C1%2C0.007;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold905 SAMTools SNP 12770 12770 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold905 SAMTools SNP 15198 15198 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold905 SAMTools SNP 15857 15857 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold905 SAMTools SNP 44034 44034 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold905 SAMTools SNP 44124 44124 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D1%2C0.00021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold905 SAMTools SNP 44199 44199 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold905 SAMTools SNP 61459 61459 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D47%3BFQ%3D32%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C186:62 scaffold908 SAMTools SNP 2954 2954 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 2972 2972 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold908 SAMTools SNP 3333 3333 46.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold908 SAMTools SNP 3362 3362 45.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold908 SAMTools SNP 38508 38508 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold908 SAMTools SNP 38592 38592 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 39709 39709 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 39729 39729 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 54959 54959 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold908 SAMTools SNP 55107 55107 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 55479 55479 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.24%2C0.0022%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold908 SAMTools SNP 59766 59766 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold908 SAMTools SNP 66150 66150 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold908 SAMTools SNP 66165 66165 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold908 SAMTools SNP 66195 66195 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold908 SAMTools SNP 66213 66213 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold908 SAMTools SNP 66771 66771 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold908 SAMTools SNP 66800 66800 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold908 SAMTools SNP 69385 69385 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold908 SAMTools SNP 69409 69409 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold908 SAMTools SNP 69458 69458 182 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C222:99 scaffold908 SAMTools SNP 78532 78532 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold908 SAMTools SNP 104015 104015 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C20%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C111%2C0:99 scaffold908 SAMTools SNP 106589 106589 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold908 SAMTools SNP 106595 106595 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 106625 106625 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C7%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.3%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C75:71 scaffold908 SAMTools SNP 106790 106790 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C18%2C0:33 scaffold908 SAMTools SNP 107536 107536 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C15%3BMQ%3D50%3BFQ%3D120%3BPV4%3D1%2C0.062%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold908 SAMTools SNP 108077 108077 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold908 SAMTools SNP 108107 108107 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D221%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold908 SAMTools SNP 108974 108974 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C16%3BMQ%3D50%3BFQ%3D208%3BPV4%3D1%2C3.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold908 SAMTools SNP 109732 109732 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 110279 110279 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0429%3BAF1%3D0.5129%3BAC1%3D1%3BDP4%3D0%2C2%2C10%2C6%3BMQ%3D50%3BFQ%3D-14.2%3BPV4%3D0.18%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C13:16 scaffold908 SAMTools SNP 111051 111051 56 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C0.0023%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C77:79 scaffold908 SAMTools SNP 111132 111132 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0097%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold908 SAMTools SNP 111321 111321 17.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C111:50 scaffold908 SAMTools SNP 115831 115831 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 115833 115833 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 118541 118541 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 123855 123855 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.7%2C5.1e-18%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold908 SAMTools SNP 124607 124607 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0028%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold908 SAMTools SNP 124802 124802 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C8%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1.2e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C195:64 scaffold908 SAMTools SNP 147489 147489 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold908 SAMTools SNP 159849 159849 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 160142 160142 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold908 SAMTools SNP 160417 160417 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 160418 160418 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 160534 160534 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C7%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold908 SAMTools SNP 160831 160831 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 160923 160923 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold908 SAMTools SNP 162919 162919 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold908 SAMTools SNP 162938 162938 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 163587 163587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold908 SAMTools SNP 163635 163635 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold908 SAMTools SNP 163928 163928 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C5%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold908 SAMTools SNP 164374 164374 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold908 SAMTools SNP 164830 164830 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C30%2C0:54 scaffold908 SAMTools SNP 165159 165159 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold908 SAMTools SNP 165210 165210 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold908 SAMTools SNP 165344 165344 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.046%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold908 SAMTools SNP 165355 165355 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.43%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold908 SAMTools SNP 166238 166238 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold908 SAMTools SNP 166242 166242 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold908 SAMTools SNP 166283 166283 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold908 SAMTools SNP 166336 166336 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold908 SAMTools SNP 166508 166508 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold908 SAMTools SNP 166906 166906 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 167878 167878 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 169083 169083 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C21%2C0:39 scaffold908 SAMTools SNP 169084 169084 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C67:70 scaffold908 SAMTools SNP 169740 169740 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 169758 169758 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold908 SAMTools SNP 169803 169803 198 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C27%2C0:51 scaffold908 SAMTools SNP 170196 170196 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 171326 171326 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 171361 171361 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C18%2C0:33 scaffold908 SAMTools SNP 185932 185932 20.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold908 SAMTools SNP 187550 187550 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold908 SAMTools SNP 228063 228063 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold908 SAMTools SNP 228404 228404 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold908 SAMTools SNP 231413 231413 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C9%2C0:16 scaffold908 SAMTools SNP 231472 231472 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold908 SAMTools SNP 232429 232429 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.018%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C36:39 scaffold908 SAMTools SNP 232450 232450 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.003%2C0.01%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold908 SAMTools SNP 232471 232471 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C9%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.36%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold908 SAMTools SNP 233195 233195 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold908 SAMTools SNP 233249 233249 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 234729 234729 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 234919 234919 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold908 SAMTools SNP 235018 235018 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold908 SAMTools SNP 239156 239156 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D29%3BFQ%3D5.73%3BPV4%3D1%2C0.00094%2C0.48%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C40:31 scaffold908 SAMTools SNP 240129 240129 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 241637 241637 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D16%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C240:28 scaffold908 SAMTools SNP 241700 241700 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0210%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.52%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold908 SAMTools SNP 242300 242300 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.53%2C0.29%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold908 SAMTools SNP 243538 243538 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.044%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold908 SAMTools SNP 243589 243589 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C0.0072%2C1%2C7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold908 SAMTools SNP 246074 246074 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold908 SAMTools SNP 263614 263614 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 263665 263665 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D553%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D88%2C8%2C430%2C8%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.003%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C73:76 scaffold908 SAMTools SNP 266704 266704 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C0%2C12%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.54%2C1%2C1%2C4.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold908 SAMTools SNP 269715 269715 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold908 SAMTools SNP 269730 269730 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold908 SAMTools SNP 289540 289540 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold908 SAMTools SNP 289835 289835 52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C41:44 scaffold908 SAMTools SNP 290931 290931 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C39%2C0:75 scaffold908 SAMTools SNP 291023 291023 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.5e-12%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C149:54 scaffold908 SAMTools SNP 291069 291069 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0369%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold908 SAMTools SNP 294704 294704 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.56%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C35:35 scaffold908 SAMTools SNP 294841 294841 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.021%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold908 SAMTools SNP 295335 295335 154 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C4%2C5%3BMQ%3D38%3BFQ%3D157%3BPV4%3D0.37%2C0.18%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold908 SAMTools SNP 295632 295632 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold908 SAMTools SNP 295656 295656 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold908 SAMTools SNP 295905 295905 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold908 SAMTools SNP 320881 320881 60 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold91 SAMTools SNP 481 481 206 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C1%2C13%2C1%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.52%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold91 SAMTools SNP 609 609 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 681 681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C30%2C2%2C11%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold91 SAMTools SNP 701 701 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C7%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 891 891 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 915 915 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C73:76 scaffold91 SAMTools SNP 930 930 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0373%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold91 SAMTools SNP 1065 1065 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold91 SAMTools SNP 1080 1080 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold91 SAMTools SNP 1791 1791 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C32%2C0%2C7%3BMQ%3D49%3BFQ%3D24%3BPV4%3D0.32%2C7.8e-12%2C0.0058%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold91 SAMTools SNP 2931 2931 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold91 SAMTools SNP 3231 3231 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C3%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00024%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 3288 3288 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C24%2C30%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 3510 3510 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C7%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.18%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold91 SAMTools SNP 3663 3663 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold91 SAMTools SNP 4083 4083 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold91 SAMTools SNP 4086 4086 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C210:63 scaffold91 SAMTools SNP 4554 4554 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:139%2C57%2C0:99 scaffold91 SAMTools SNP 4559 4559 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold91 SAMTools SNP 4560 4560 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold91 SAMTools SNP 9219 9219 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C22%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold91 SAMTools SNP 13800 13800 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.024%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold910 SAMTools SNP 1354 1354 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D35%3BFQ%3D4.66%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold910 SAMTools SNP 1957 1957 97 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C0%3BMQ%3D37%3BFQ%3D53%3BPV4%3D0.015%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C80:83 scaffold910 SAMTools SNP 3040 3040 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C7%3BMQ%3D41%3BFQ%3D122%3BPV4%3D0.0032%2C1%2C0.0076%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C180:99 scaffold910 SAMTools SNP 3071 3071 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C2%2C2%2C0%3BMQ%3D47%3BFQ%3D15.1%3BPV4%3D1%2C0.39%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold910 SAMTools SNP 3097 3097 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C2%2C57%2C1%3BMQ%3D47%3BFQ%3D212%3BPV4%3D0.19%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold910 SAMTools SNP 3415 3415 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C3%2C18%2C4%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.083%2C1%2C8.2e-07%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold910 SAMTools SNP 3433 3433 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C6%2C5%2C4%3BMQ%3D48%3BFQ%3D165%3BPV4%3D0.21%2C0.2%2C0.036%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold910 SAMTools SNP 3445 3445 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C18%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.26%2C0.19%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold910 SAMTools SNP 3768 3768 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C57%2C1%2C21%3BMQ%3D47%3BFQ%3D179%3BPV4%3D0.48%2C0.15%2C1.5e-05%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold910 SAMTools SNP 61151 61151 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C10%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold910 SAMTools SNP 61481 61481 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C15%2C2%2C10%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.084%2C1.3e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold910 SAMTools SNP 61501 61501 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C0%2C8%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.076%2C6.7e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold910 SAMTools SNP 61617 61617 101 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C33%2C0:63 scaffold910 SAMTools SNP 61937 61937 72 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C2.1e-15%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C197:99 scaffold910 SAMTools SNP 61948 61948 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C39%2C0:75 scaffold910 SAMTools SNP 62210 62210 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C24%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C8.8e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold910 SAMTools SNP 62297 62297 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C36%2C0:69 scaffold910 SAMTools SNP 63821 63821 154 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C91:94 scaffold910 SAMTools SNP 63923 63923 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C11%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.48%2C4.3e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C248:40 scaffold910 SAMTools SNP 64442 64442 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C9%2C0:16 scaffold910 SAMTools SNP 67644 67644 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.47%2C8.5e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold910 SAMTools SNP 70874 70874 164 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C1%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.083%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C66:69 scaffold911 SAMTools SNP 43091 43091 4.61 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold911 SAMTools SNP 175973 175973 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold911 SAMTools SNP 186663 186663 35.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold911 SAMTools SNP 186939 186939 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C21%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold911 SAMTools SNP 239884 239884 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold911 SAMTools SNP 241673 241673 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold911 SAMTools SNP 243331 243331 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C222:57 scaffold911 SAMTools SNP 244161 244161 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold911 SAMTools SNP 245737 245737 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold911 SAMTools SNP 247542 247542 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold911 SAMTools SNP 248686 248686 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold911 SAMTools SNP 249135 249135 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold911 SAMTools SNP 249765 249765 27.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold911 SAMTools SNP 255254 255254 79 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C79%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C238%2C0:99 scaffold911 SAMTools SNP 255264 255264 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C50%2C0%2C30%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold911 SAMTools SNP 256253 256253 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold911 SAMTools SNP 256271 256271 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D45%3BFQ%3D48.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C80:78 scaffold911 SAMTools SNP 257092 257092 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold911 SAMTools SNP 260401 260401 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C7.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C104:48 scaffold911 SAMTools SNP 261579 261579 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C152:99 scaffold911 SAMTools SNP 261639 261639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold911 SAMTools SNP 261772 261772 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C5%2C12%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold911 SAMTools SNP 261835 261835 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C16%2C0%2C15%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.015%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold911 SAMTools SNP 263596 263596 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C15%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold911 SAMTools SNP 263638 263638 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold911 SAMTools SNP 264218 264218 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C7%2C0%2C9%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.00094%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold911 SAMTools SNP 265284 265284 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C11%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C3.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold911 SAMTools SNP 265576 265576 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold911 SAMTools SNP 265612 265612 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold911 SAMTools SNP 265903 265903 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.62%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold911 SAMTools SNP 266206 266206 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold911 SAMTools SNP 267135 267135 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D1%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C5:8 scaffold911 SAMTools SNP 270107 270107 144 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.24%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold911 SAMTools SNP 270149 270149 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold911 SAMTools SNP 270299 270299 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold911 SAMTools SNP 272207 272207 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold911 SAMTools SNP 275722 275722 74 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold911 SAMTools SNP 279359 279359 44 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold911 SAMTools SNP 279415 279415 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold911 SAMTools SNP 279418 279418 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold911 SAMTools SNP 279493 279493 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold911 SAMTools SNP 280610 280610 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold911 SAMTools SNP 281171 281171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold911 SAMTools SNP 281184 281184 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C9%2C0%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.53%2C0.24%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold911 SAMTools SNP 281204 281204 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C6%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold911 SAMTools SNP 283519 283519 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 12622 12622 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 12930 12930 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C44:30 scaffold914 SAMTools SNP 12949 12949 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.072%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold914 SAMTools SNP 13395 13395 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0128%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold914 SAMTools SNP 13591 13591 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold914 SAMTools SNP 14255 14255 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 15167 15167 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.067%2C0.094%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C128:56 scaffold914 SAMTools SNP 16472 16472 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold914 SAMTools SNP 16496 16496 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold914 SAMTools SNP 19964 19964 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold914 SAMTools SNP 26124 26124 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 27894 27894 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 28249 28249 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold914 SAMTools SNP 30981 30981 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 31026 31026 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 49205 49205 40.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C21%2C0:39 scaffold914 SAMTools SNP 49754 49754 57.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C6%2C0:10 scaffold914 SAMTools SNP 78492 78492 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold914 SAMTools SNP 87961 87961 10.4 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold914 SAMTools SNP 88148 88148 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D227%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C0%2C140%2C0%3BMQ%3D50%3BFQ%3D-203%3BPV4%3D1%2C1.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C176%2C0:99 scaffold914 SAMTools SNP 89764 89764 135 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C13%2C10%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.046%2C4.8e-27%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold914 SAMTools SNP 89902 89902 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C63%2C40%2C42%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.56%2C1.6e-123%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold914 SAMTools SNP 90604 90604 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C23%2C20%2C16%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.67%2C2.9e-81%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold914 SAMTools SNP 91339 91339 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D365%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C46%3BMQ%3D50%3BFQ%3D-133%3BPV4%3D1%2C8.8e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C106%2C0:99 scaffold914 SAMTools SNP 92905 92905 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C62%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold914 SAMTools SNP 94163 94163 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C92%2C9%2C81%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 94535 94535 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C36%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.9e-05%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 94610 94610 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C28%2C0%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.038%2C0.23%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold914 SAMTools SNP 94795 94795 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C36%2C0%2C31%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1.7e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold914 SAMTools SNP 94837 94837 178 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C30%2C0%2C24%3BMQ%3D50%3BFQ%3D181%3BPV4%3D6.3e-05%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold914 SAMTools SNP 95315 95315 181 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C5%2C37%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.31%2C2.2e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C178:99 scaffold914 SAMTools SNP 95431 95431 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C38%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold914 SAMTools SNP 96567 96567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C30%2C5%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 96737 96737 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C48%2C15%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 96806 96806 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C10%2C18%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 97336 97336 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C3%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 98817 98817 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C13%2C11%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 100284 100284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C125%2C27%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 100295 100295 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 100810 100810 211 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C67%2C0%2C45%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold914 SAMTools SNP 100814 100814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C64%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C243:99 scaffold914 SAMTools SNP 100828 100828 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C97%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 100957 100957 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 101912 101912 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C136%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 101919 101919 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C147%2C12%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 102540 102540 224 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C94%2C17%2C15%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold914 SAMTools SNP 102549 102549 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C68%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 102588 102588 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D193%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 102919 102919 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 102949 102949 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C29%2C1%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00071%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 103107 103107 112 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.00033%2C1%2C1%2C0.00063;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C217:99 scaffold914 SAMTools SNP 103125 103125 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.00012%2C1.3e-08%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C201:84 scaffold914 SAMTools SNP 104886 104886 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C16%2C0%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C126:99 scaffold914 SAMTools SNP 104940 104940 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.38%2C0.002%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold914 SAMTools SNP 105381 105381 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C51%2C7%2C104%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-05%2C1%2C1%2C0.0015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 105532 105532 8.65 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold914 SAMTools SNP 105597 105597 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D222%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C79%2C23%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 105639 105639 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D131%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold914 SAMTools SNP 105738 105738 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C23%2C59%2C65%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 105903 105903 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D906%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D493%2C12%2C356%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0052%2C1%2C0.01%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 105943 105943 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1074%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D530%2C48%2C411%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1.1e-28%2C0.011%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 105976 105976 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C59%2C133%2C50%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.91%2C3.8e-174%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C255:99 scaffold914 SAMTools SNP 106219 106219 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C102%2C1%2C30%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.078%2C0.097%2C1%2C1.3e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold914 SAMTools SNP 106225 106225 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C98%2C9%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.48%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 107330 107330 222 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D3637%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C19%2C85%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.19%2C0.00023%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0%2C215%2C226%2C233:99 scaffold914 SAMTools SNP 112913 112913 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C36:39 scaffold914 SAMTools SNP 112920 112920 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 112966 112966 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 117863 117863 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D82%2C1%2C11%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C221:48 scaffold914 SAMTools SNP 122630 122630 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D169%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C55%2C6%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 122971 122971 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.42%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold914 SAMTools SNP 122989 122989 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 126047 126047 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C251:66 scaffold914 SAMTools SNP 126055 126055 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 129413 129413 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold914 SAMTools SNP 129624 129624 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold914 SAMTools SNP 129928 129928 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0088%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 130155 130155 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold914 SAMTools SNP 133158 133158 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 133164 133164 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 141018 141018 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.2%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold914 SAMTools SNP 141200 141200 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C5.9e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C209:99 scaffold914 SAMTools SNP 147626 147626 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C21%2C0:39 scaffold914 SAMTools SNP 148122 148122 28.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold914 SAMTools SNP 148966 148966 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C19%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold914 SAMTools SNP 149295 149295 123 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C5%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:156%2C187%2C0:99 scaffold914 SAMTools SNP 149988 149988 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.19%2C5.3e-11%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C218:63 scaffold914 SAMTools SNP 150137 150137 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 151744 151744 189 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C14%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C248:99 scaffold914 SAMTools SNP 162818 162818 16.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1523%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold914 SAMTools SNP 162883 162883 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C142%2C20%2C120%3BMQ%3D50%3BFQ%3D117%3BPV4%3D8.4e-12%2C6.7e-238%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold914 SAMTools SNP 174194 174194 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C123%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 174290 174290 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D545%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C239%2C14%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 175653 175653 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C11%2C56%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00055%2C1.3e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 178295 178295 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1764%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D533%2C418%2C191%2C266%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.9e-07%2C1%2C1%2C3.3e-27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 180092 180092 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold914 SAMTools SNP 180151 180151 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1447%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C65%2C769%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 180893 180893 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold914 SAMTools SNP 182123 182123 140 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:173%2C18%2C0:33 scaffold914 SAMTools SNP 182418 182418 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C9%2C18%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C1.8e-24%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold914 SAMTools SNP 182424 182424 35.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold914 SAMTools SNP 183308 183308 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C8%3BMQ%3D40%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold914 SAMTools SNP 183313 183313 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C13%2C3%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.63%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 183455 183455 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C14%2C22%3BMQ%3D40%3BFQ%3D211%3BPV4%3D0.086%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C238:99 scaffold914 SAMTools SNP 183470 183470 208 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C22%2C4%2C34%3BMQ%3D42%3BFQ%3D211%3BPV4%3D0.0063%2C0.49%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold914 SAMTools SNP 183503 183503 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C35%2C10%2C21%3BMQ%3D40%3BFQ%3D212%3BPV4%3D0.29%2C0.081%2C1%2C0.0026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold914 SAMTools SNP 183510 183510 13.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D21%3BFQ%3D-32%3BPV4%3D0.11%2C0.0037%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C5%2C0:8 scaffold914 SAMTools SNP 184246 184246 176 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D47%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:209%2C24%2C0:45 scaffold914 SAMTools SNP 184897 184897 187 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C52%2C2%2C40%3BMQ%3D22%3BFQ%3D105%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C132:99 scaffold914 SAMTools SNP 192465 192465 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold914 SAMTools SNP 192623 192623 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold914 SAMTools SNP 192925 192925 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 192926 192926 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 192938 192938 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold914 SAMTools SNP 193136 193136 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C72%2C0:99 scaffold914 SAMTools SNP 193167 193167 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold914 SAMTools SNP 193173 193173 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold914 SAMTools SNP 193182 193182 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C24%2C18%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D8.6e-05%2C1%2C1%2C2.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold914 SAMTools SNP 193202 193202 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C26%2C52%2C0%3BMQ%3D50%3BFQ%3D224%3BPV4%3D4.1e-08%2C1%2C1%2C6.4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold914 SAMTools SNP 193666 193666 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C56%2C0%2C9%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.58%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold914 SAMTools SNP 193679 193679 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold914 SAMTools SNP 193989 193989 153 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold914 SAMTools SNP 195080 195080 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C100:80 scaffold914 SAMTools SNP 195230 195230 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D474%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C131%2C44%2C236%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.047%2C1%2C0.058%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 195506 195506 112 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D57%2C3%2C46%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.26%2C8.6e-13%2C1%2C7.1e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold914 SAMTools SNP 195532 195532 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C9%2C19%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.048%2C5.4e-06%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold914 SAMTools SNP 198991 198991 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold914 SAMTools SNP 199674 199674 70 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C51%2C2%2C6%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.21%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold914 SAMTools SNP 200962 200962 103 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D45%3BPV4%3D1%2C0.11%2C1%2C1.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C72:75 scaffold914 SAMTools SNP 201997 201997 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D84%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C232:99 scaffold914 SAMTools SNP 203683 203683 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C4%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0023%2C1%2C1%2C1.7e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold914 SAMTools SNP 204118 204118 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 204143 204143 156 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0016%2C1%2C1%2C3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold914 SAMTools SNP 204539 204539 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C1%2C4%3BMQ%3D49%3BFQ%3D134%3BPV4%3D0.6%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold914 SAMTools SNP 204667 204667 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold914 SAMTools SNP 204833 204833 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 208811 208811 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold914 SAMTools SNP 208836 208836 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.17%2C0.2%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C193:99 scaffold914 SAMTools SNP 209082 209082 210 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold914 SAMTools SNP 209593 209593 145 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C12%2C3%2C4%3BMQ%3D49%3BFQ%3D148%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C255:99 scaffold914 SAMTools SNP 213636 213636 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C27%2C43%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 218953 218953 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D31%3BFQ%3D6.2%3BPV4%3D1%2C0.47%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C77:31 scaffold914 SAMTools SNP 221348 221348 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.15%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C235:86 scaffold914 SAMTools SNP 221381 221381 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C2%2C13%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 221560 221560 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C13%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 221933 221933 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C11%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 221957 221957 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 221986 221986 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.27%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold914 SAMTools SNP 222185 222185 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C11%2C26%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 222531 222531 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C1%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 222991 222991 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0356%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold914 SAMTools SNP 223013 223013 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold914 SAMTools SNP 223071 223071 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold914 SAMTools SNP 223075 223075 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold914 SAMTools SNP 223082 223082 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold914 SAMTools SNP 223304 223304 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C15%2C0:27 scaffold914 SAMTools SNP 223311 223311 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold914 SAMTools SNP 223688 223688 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 223690 223690 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold914 SAMTools SNP 223736 223736 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold914 SAMTools SNP 224769 224769 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold914 SAMTools SNP 224775 224775 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold914 SAMTools SNP 225296 225296 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 225463 225463 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0017%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold914 SAMTools SNP 225507 225507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold914 SAMTools SNP 225762 225762 31.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold914 SAMTools SNP 226036 226036 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C37%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold914 SAMTools SNP 226406 226406 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 226470 226470 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold914 SAMTools SNP 226487 226487 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold914 SAMTools SNP 226507 226507 218 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C21%2C0:39 scaffold914 SAMTools SNP 226532 226532 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C218:72 scaffold914 SAMTools SNP 228054 228054 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C218:72 scaffold914 SAMTools SNP 228559 228559 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold914 SAMTools SNP 228584 228584 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 228807 228807 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.26%2C0.18%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold914 SAMTools SNP 228829 228829 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C6%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold914 SAMTools SNP 228836 228836 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C7%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.12%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold914 SAMTools SNP 228854 228854 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.28%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold914 SAMTools SNP 228875 228875 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C20%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.017%2C0.047%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold914 SAMTools SNP 228877 228877 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C4%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00067%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 229517 229517 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold914 SAMTools SNP 229820 229820 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold914 SAMTools SNP 229869 229869 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 232408 232408 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.053%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C237:76 scaffold914 SAMTools SNP 238984 238984 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D47.5%3BPV4%3D0.1%2C0.032%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C77:77 scaffold914 SAMTools SNP 244269 244269 70 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C16%2C179%2C2%3BMQ%3D50%3BFQ%3D73%3BPV4%3D9.5e-05%2C2.5e-201%2C1%2C2.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold914 SAMTools SNP 244329 244329 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D255%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C79%2C5%2C157%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 245118 245118 207 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C30%2C1%2C13%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.32%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C246:99 scaffold914 SAMTools SNP 245119 245119 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.19%2C1%2C5.2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold914 SAMTools SNP 245322 245322 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C4%2C21%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.67%2C2.3e-17%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold914 SAMTools SNP 245352 245352 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold914 SAMTools SNP 246098 246098 3.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold914 SAMTools SNP 247060 247060 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C44%2C11%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00013%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 247798 247798 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold914 SAMTools SNP 249518 249518 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 249587 249587 9.31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold914 SAMTools SNP 249675 249675 48.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C18%2C0:33 scaffold914 SAMTools SNP 249924 249924 16.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold914 SAMTools SNP 255063 255063 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C75%2C0:99 scaffold914 SAMTools SNP 259412 259412 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold914 SAMTools SNP 260426 260426 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C30%2C1%2C53%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-05%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 260483 260483 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold914 SAMTools SNP 264899 264899 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C2%2C2%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.59%2C0.0034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold914 SAMTools SNP 265055 265055 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 265223 265223 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C18%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold914 SAMTools SNP 265435 265435 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:155%2C12%2C0:21 scaffold914 SAMTools SNP 265553 265553 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold914 SAMTools SNP 266031 266031 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C12%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold914 SAMTools SNP 266204 266204 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C11%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold914 SAMTools SNP 266348 266348 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.55%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold914 SAMTools SNP 267903 267903 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C18%2C9%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 270129 270129 19.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.12%2C0.0064%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold914 SAMTools SNP 270136 270136 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold914 SAMTools SNP 271896 271896 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C27%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold914 SAMTools SNP 271926 271926 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C23%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold914 SAMTools SNP 272450 272450 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold914 SAMTools SNP 272890 272890 10.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold914 SAMTools SNP 272920 272920 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.46%2C1.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C104:68 scaffold914 SAMTools SNP 273978 273978 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 274332 274332 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C8.1e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C240:48 scaffold914 SAMTools SNP 278190 278190 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold914 SAMTools SNP 278209 278209 148 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.11%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold914 SAMTools SNP 278362 278362 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C10%3BMQ%3D49%3BFQ%3D61%3BPV4%3D0.011%2C5.9e-11%2C0.17%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold914 SAMTools SNP 278570 278570 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold914 SAMTools SNP 280445 280445 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C10%2C14%2C1%3BMQ%3D49%3BFQ%3D190%3BPV4%3D0.0095%2C1%2C0.42%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold914 SAMTools SNP 280963 280963 226 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C14%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold914 SAMTools SNP 284312 284312 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold914 SAMTools SNP 284318 284318 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold914 SAMTools SNP 284320 284320 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold914 SAMTools SNP 287092 287092 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 287108 287108 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 289123 289123 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.57%2C3e-09%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C148:57 scaffold914 SAMTools SNP 293765 293765 61.1 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C21%2C3%2C84%2C0%2C81:33 scaffold914 SAMTools SNP 293882 293882 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.02%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold914 SAMTools SNP 295240 295240 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold914 SAMTools SNP 295335 295335 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold914 SAMTools SNP 295357 295357 170 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:203%2C36%2C0:69 scaffold914 SAMTools SNP 295358 295358 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.24%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C156:71 scaffold914 SAMTools SNP 296405 296405 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C0.11%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold914 SAMTools SNP 296564 296564 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 296621 296621 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold914 SAMTools SNP 296642 296642 179 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold914 SAMTools SNP 296863 296863 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C21%2C0:39 scaffold914 SAMTools SNP 296865 296865 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold914 SAMTools SNP 296980 296980 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C8%2C3%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C4.6e-22%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C224:99 scaffold914 SAMTools SNP 297103 297103 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C3%2C43%3BMQ%3D50%3BFQ%3D-135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold914 SAMTools SNP 297439 297439 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold914 SAMTools SNP 297584 297584 3.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold914 SAMTools SNP 297678 297678 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C48%2C0:93 scaffold914 SAMTools SNP 298520 298520 81 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold914 SAMTools SNP 298529 298529 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold914 SAMTools SNP 299085 299085 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold914 SAMTools SNP 299110 299110 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold914 SAMTools SNP 303388 303388 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.24%2C3.7e-07%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold914 SAMTools SNP 303557 303557 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold914 SAMTools SNP 303572 303572 118 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C219:99 scaffold914 SAMTools SNP 304788 304788 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C5%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D1%2C0.25%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C185:99 scaffold914 SAMTools SNP 305489 305489 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold914 SAMTools SNP 305815 305815 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C8%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.13%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C159:99 scaffold914 SAMTools SNP 306948 306948 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 308458 308458 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold914 SAMTools SNP 308459 308459 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0001;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold914 SAMTools SNP 310654 310654 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C4%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold914 SAMTools SNP 311630 311630 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold914 SAMTools SNP 311702 311702 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 312163 312163 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold914 SAMTools SNP 315491 315491 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 315704 315704 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 316199 316199 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.00089%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 316280 316280 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C27%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold914 SAMTools SNP 316541 316541 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 317742 317742 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold914 SAMTools SNP 319122 319122 29 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C24%2C0:44 scaffold914 SAMTools SNP 319834 319834 30.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C18%2C0:33 scaffold914 SAMTools SNP 321394 321394 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold914 SAMTools SNP 321404 321404 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold914 SAMTools SNP 321468 321468 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0128%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold914 SAMTools SNP 369707 369707 11.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold914 SAMTools SNP 369987 369987 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 370186 370186 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 370373 370373 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 375725 375725 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold914 SAMTools SNP 376136 376136 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold914 SAMTools SNP 376460 376460 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold914 SAMTools SNP 376463 376463 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold914 SAMTools SNP 378177 378177 155 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.56%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C241:99 scaffold914 SAMTools SNP 379891 379891 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold914 SAMTools SNP 383315 383315 209 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold914 SAMTools SNP 394473 394473 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 394611 394611 68.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold914 SAMTools SNP 395906 395906 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold914 SAMTools SNP 395973 395973 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 397046 397046 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 397520 397520 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 397919 397919 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold914 SAMTools SNP 398236 398236 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 401007 401007 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold914 SAMTools SNP 401073 401073 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C0.3%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold914 SAMTools SNP 401244 401244 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold914 SAMTools SNP 401740 401740 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 401781 401781 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 401822 401822 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 404573 404573 37.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold914 SAMTools SNP 405386 405386 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 405435 405435 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 407326 407326 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 407601 407601 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 408181 408181 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold914 SAMTools SNP 408869 408869 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold914 SAMTools SNP 408897 408897 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold914 SAMTools SNP 408926 408926 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C12%2C0:21 scaffold914 SAMTools SNP 414726 414726 106 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold914 SAMTools SNP 415044 415044 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.52%2C7.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold914 SAMTools SNP 415052 415052 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C4.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C223:99 scaffold914 SAMTools SNP 415316 415316 63 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C30%2C0:57 scaffold914 SAMTools SNP 416017 416017 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 416038 416038 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold914 SAMTools SNP 416524 416524 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold914 SAMTools SNP 416587 416587 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C20:23 scaffold914 SAMTools SNP 417792 417792 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold914 SAMTools SNP 417840 417840 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold914 SAMTools SNP 418715 418715 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C7%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.013%2C4.5e-16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold914 SAMTools SNP 418827 418827 39 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C8%2C25%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.09%2C7.2e-63%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold914 SAMTools SNP 419434 419434 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold914 SAMTools SNP 419917 419917 51 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C33%2C0:63 scaffold914 SAMTools SNP 420069 420069 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C27%2C8%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.0006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 420078 420078 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C1%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 420532 420532 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C61%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold914 SAMTools SNP 420617 420617 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.048%2C0.0023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C162:43 scaffold914 SAMTools SNP 421400 421400 130 . . REF=C;ALT=A,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C30%2C15%2C156%2C0%2C153:27 scaffold914 SAMTools SNP 421418 421418 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0151%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C236:33 scaffold914 SAMTools SNP 421522 421522 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold914 SAMTools SNP 421532 421532 94 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold914 SAMTools SNP 421890 421890 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold914 SAMTools SNP 421896 421896 149 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C104:99 scaffold914 SAMTools SNP 421950 421950 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 421970 421970 23 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.0064;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold914 SAMTools SNP 422343 422343 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C6%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 423158 423158 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C7%2C61%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.79%2C0.077%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 423173 423173 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C70%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 423359 423359 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C54%2C10%2C94%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 423378 423378 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C35%2C9%2C51%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 424709 424709 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 424778 424778 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C13%2C1%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.018%2C0.37%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold914 SAMTools SNP 424832 424832 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C38%2C2%2C12%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.13%2C3e-05%2C1%2C0.00071;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold914 SAMTools SNP 425923 425923 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D48%2C8%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0033%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 425935 425935 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C10%2C15%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C0.34%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 427287 427287 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C33%2C1%2C14%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.66%2C1%2C1%2C0.0082;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold914 SAMTools SNP 427335 427335 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold914 SAMTools SNP 430635 430635 42 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C25%2C7%2C1%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00043%2C6.7e-11%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold914 SAMTools SNP 430722 430722 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold914 SAMTools SNP 431979 431979 66 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C252:99 scaffold914 SAMTools SNP 435239 435239 130 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.043%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold914 SAMTools SNP 435368 435368 79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C5%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C138%2C0:99 scaffold914 SAMTools SNP 435379 435379 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold914 SAMTools SNP 437272 437272 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 438309 438309 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold914 SAMTools SNP 438315 438315 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold914 SAMTools SNP 438551 438551 3.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0:4 scaffold914 SAMTools SNP 438646 438646 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold914 SAMTools SNP 438737 438737 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0396%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D4.6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C30:33 scaffold914 SAMTools SNP 438746 438746 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C35:38 scaffold914 SAMTools SNP 445193 445193 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 446847 446847 139 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold914 SAMTools SNP 447330 447330 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold914 SAMTools SNP 447652 447652 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold914 SAMTools SNP 452881 452881 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 454850 454850 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold914 SAMTools SNP 455188 455188 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 459165 459165 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 460695 460695 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 464003 464003 18.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.4%3BPV4%3D0.33%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C41:43 scaffold914 SAMTools SNP 464241 464241 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 464332 464332 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 471180 471180 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C39%2C0:74 scaffold914 SAMTools SNP 471686 471686 12.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C15%2C0:22 scaffold914 SAMTools SNP 471777 471777 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C3%3BMQ%3D47%3BFQ%3D31%3BPV4%3D0.17%2C0.0021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C101:61 scaffold914 SAMTools SNP 471836 471836 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C32%2C10%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.13%2C6.2e-87%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold914 SAMTools SNP 471953 471953 28 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C32%2C5%2C29%3BMQ%3D45%3BFQ%3D31%3BPV4%3D0.76%2C8.6e-52%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C252:61 scaffold914 SAMTools SNP 471977 471977 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C0%2C41%3BMQ%3D47%3BFQ%3D63%3BPV4%3D1%2C6.2e-43%2C0.24%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C241:93 scaffold914 SAMTools SNP 495425 495425 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0030%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 496169 496169 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 502186 502186 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold914 SAMTools SNP 502231 502231 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C11%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C247:99 scaffold914 SAMTools SNP 502700 502700 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold914 SAMTools SNP 521215 521215 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D34.2%3BPV4%3D0.46%2C1.6e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C69:64 scaffold914 SAMTools SNP 521231 521231 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D10.3%3BPV4%3D0.25%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C38:40 scaffold914 SAMTools SNP 527172 527172 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C21%3BMQ%3D3%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C75%2C0:57 scaffold914 SAMTools SNP 533139 533139 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C0%2C3%3BMQ%3D48%3BFQ%3D12.3%3BPV4%3D0.018%2C5.9e-05%2C1%2C0.00092;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold914 SAMTools SNP 534571 534571 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold914 SAMTools SNP 534595 534595 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.07%2C0.047%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold914 SAMTools SNP 535556 535556 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C3%3BMQ%3D48%3BFQ%3D69%3BPV4%3D1%2C0.24%2C1%2C4.1e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C187:99 scaffold914 SAMTools SNP 535566 535566 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C3%2C3%3BMQ%3D48%3BFQ%3D186%3BPV4%3D0.24%2C0.031%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C232:99 scaffold914 SAMTools SNP 536669 536669 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold914 SAMTools SNP 542645 542645 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.17%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold914 SAMTools SNP 544581 544581 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C184:99 scaffold914 SAMTools SNP 548565 548565 6.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold914 SAMTools SNP 548571 548571 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold914 SAMTools SNP 548625 548625 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold914 SAMTools SNP 549264 549264 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C9%2C0:16 scaffold914 SAMTools SNP 549267 549267 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.16%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C100:54 scaffold914 SAMTools SNP 549270 549270 179 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C24%2C0:45 scaffold914 SAMTools SNP 556176 556176 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C9%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.3%2C1.9e-20%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold914 SAMTools SNP 557404 557404 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 557424 557424 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.0037;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold914 SAMTools SNP 557444 557444 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 557495 557495 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold914 SAMTools SNP 558521 558521 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.47%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold914 SAMTools SNP 558530 558530 62 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C0.47%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold914 SAMTools SNP 558554 558554 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C0.002%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C104:99 scaffold914 SAMTools SNP 559152 559152 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold914 SAMTools SNP 559245 559245 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold914 SAMTools SNP 559263 559263 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold914 SAMTools SNP 559278 559278 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold914 SAMTools SNP 559743 559743 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold914 SAMTools SNP 559794 559794 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold914 SAMTools SNP 559851 559851 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold914 SAMTools SNP 561684 561684 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C1%2C3%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold914 SAMTools SNP 561714 561714 202 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C10%2C3%3BMQ%3D50%3BFQ%3D205%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold914 SAMTools SNP 562241 562241 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.087%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 562244 562244 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C8%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.0031%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold914 SAMTools SNP 562283 562283 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C41%2C7%2C46%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.017%2C0.38%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold914 SAMTools SNP 562989 562989 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C89%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold914 SAMTools SNP 563115 563115 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold914 SAMTools SNP 563439 563439 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold914 SAMTools SNP 563457 563457 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C36%2C0:69 scaffold914 SAMTools SNP 564493 564493 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C12%2C3%3BMQ%3D47%3BFQ%3D-63%3BPV4%3D1%2C0.21%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold914 SAMTools SNP 565792 565792 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C5.8e-06%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C107:44 scaffold914 SAMTools SNP 571615 571615 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold916 SAMTools SNP 4689 4689 44.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold916 SAMTools SNP 4857 4857 33.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold916 SAMTools SNP 5695 5695 32.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C15%2C0:27 scaffold916 SAMTools SNP 6490 6490 32 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold916 SAMTools SNP 10178 10178 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 10185 10185 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 10260 10260 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold916 SAMTools SNP 10504 10504 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 10553 10553 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold916 SAMTools SNP 10906 10906 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold916 SAMTools SNP 11453 11453 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold916 SAMTools SNP 11471 11471 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold916 SAMTools SNP 11578 11578 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C149:99 scaffold916 SAMTools SNP 11744 11744 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C157:99 scaffold916 SAMTools SNP 11783 11783 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold916 SAMTools SNP 12135 12135 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold916 SAMTools SNP 12152 12152 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0012%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 14707 14707 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold916 SAMTools SNP 14729 14729 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold916 SAMTools SNP 15145 15145 44.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold916 SAMTools SNP 15383 15383 107 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:140%2C138%2C0:99 scaffold916 SAMTools SNP 15418 15418 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C5%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C4.6e-22%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold916 SAMTools SNP 15473 15473 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C6%2C3%3BMQ%3D50%3BFQ%3D29.6%3BPV4%3D1%2C5.6e-13%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C67:60 scaffold916 SAMTools SNP 17872 17872 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold916 SAMTools SNP 17989 17989 39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C9%2C0:16 scaffold916 SAMTools SNP 18511 18511 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C6%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C2.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold916 SAMTools SNP 20593 20593 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold916 SAMTools SNP 25280 25280 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.071%2C0.001%2C1%2C0.0053;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold916 SAMTools SNP 25332 25332 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C15%2C1%2C5%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold916 SAMTools SNP 25790 25790 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C14%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.19%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold916 SAMTools SNP 26074 26074 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C6%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold916 SAMTools SNP 27377 27377 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C6%3BMQ%3D48%3BFQ%3D119%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C146:99 scaffold916 SAMTools SNP 27445 27445 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C0%3BMQ%3D46%3BFQ%3D13.2%3BPV4%3D0.43%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C154:42 scaffold916 SAMTools SNP 27816 27816 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold916 SAMTools SNP 28701 28701 12.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold916 SAMTools SNP 30604 30604 65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C66%2C0:99 scaffold916 SAMTools SNP 30996 30996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C50%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold916 SAMTools SNP 31368 31368 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C27%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold916 SAMTools SNP 31631 31631 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C15%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold916 SAMTools SNP 31988 31988 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C45%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold916 SAMTools SNP 32042 32042 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C13%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold916 SAMTools SNP 32388 32388 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C14%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold916 SAMTools SNP 32437 32437 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C23%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold916 SAMTools SNP 32466 32466 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C30%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold916 SAMTools SNP 33571 33571 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold916 SAMTools SNP 37595 37595 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 38354 38354 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold916 SAMTools SNP 40695 40695 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C5%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold916 SAMTools SNP 42502 42502 57.3 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C15%2C0:27 scaffold916 SAMTools SNP 68374 68374 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold916 SAMTools SNP 79963 79963 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold916 SAMTools SNP 80007 80007 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.22%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold916 SAMTools SNP 80019 80019 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.095%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C160:77 scaffold916 SAMTools SNP 80493 80493 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold916 SAMTools SNP 80528 80528 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold916 SAMTools SNP 80529 80529 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold916 SAMTools SNP 81204 81204 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold916 SAMTools SNP 81267 81267 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C109:40 scaffold916 SAMTools SNP 100306 100306 195 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C8:11 scaffold916 SAMTools SNP 102107 102107 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 102585 102585 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C21%2C0:39 scaffold916 SAMTools SNP 121588 121588 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0445%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold916 SAMTools SNP 121591 121591 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold916 SAMTools SNP 124122 124122 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C101%3BMQ%3D10%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C255%2C0:99 scaffold916 SAMTools SNP 132517 132517 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.27%2C0.1%2C1%2C9.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold916 SAMTools SNP 133546 133546 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold916 SAMTools SNP 133561 133561 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C71:74 scaffold916 SAMTools SNP 133582 133582 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold916 SAMTools SNP 134891 134891 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold916 SAMTools SNP 134939 134939 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 135942 135942 142 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C136:99 scaffold916 SAMTools SNP 135945 135945 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold916 SAMTools SNP 135965 135965 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold916 SAMTools SNP 136004 136004 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold916 SAMTools SNP 136010 136010 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold916 SAMTools SNP 137286 137286 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold916 SAMTools SNP 137322 137322 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C203:99 scaffold916 SAMTools SNP 154907 154907 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold916 SAMTools SNP 155218 155218 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold916 SAMTools SNP 167295 167295 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C177:72 scaffold917 SAMTools SNP 1745 1745 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold917 SAMTools SNP 2941 2941 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C13%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 3638 3638 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C22%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C5.2e-06%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 3668 3668 137 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C39%2C6%2C4%3BMQ%3D50%3BFQ%3D140%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold917 SAMTools SNP 3677 3677 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C42%2C6%2C8%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.33%2C0.02%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold917 SAMTools SNP 5915 5915 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C1%2C33%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C0.21%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 6365 6365 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C33%2C0%2C31%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0011%2C4.1e-08%2C1%2C2.9e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold917 SAMTools SNP 6368 6368 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C40%2C0%2C25%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.0069%2C5.3e-09%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold917 SAMTools SNP 7430 7430 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C8%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold917 SAMTools SNP 8935 8935 91 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.0051%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold917 SAMTools SNP 9085 9085 176 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C1%2C12%3BMQ%3D50%3BFQ%3D179%3BPV4%3D0.23%2C6.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold917 SAMTools SNP 9118 9118 173 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C3%2C5%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.23%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold917 SAMTools SNP 9581 9581 173 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C42%2C0%2C18%3BMQ%3D50%3BFQ%3D176%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C247:99 scaffold917 SAMTools SNP 10148 10148 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C18%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0018%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold917 SAMTools SNP 12490 12490 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold917 SAMTools SNP 12500 12500 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0201%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D12%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.22%2C0.22%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold917 SAMTools SNP 13729 13729 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C49%2C27%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.87%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 26688 26688 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0363%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.002%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold917 SAMTools SNP 27254 27254 159 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C7%2C4%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.46%2C2.1e-06%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold917 SAMTools SNP 28294 28294 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C18%2C6%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D7.1e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 135157 135157 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold917 SAMTools SNP 182986 182986 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0002;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold917 SAMTools SNP 184298 184298 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C1%2C33%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 185088 185088 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold917 SAMTools SNP 187405 187405 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold917 SAMTools SNP 187521 187521 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold917 SAMTools SNP 187710 187710 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C8%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold917 SAMTools SNP 189037 189037 96.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0449%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C5%2C7%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C11:14 scaffold917 SAMTools SNP 189110 189110 71 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.21%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C223:99 scaffold917 SAMTools SNP 189436 189436 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold917 SAMTools SNP 189597 189597 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0221%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold917 SAMTools SNP 189647 189647 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold917 SAMTools SNP 189918 189918 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold917 SAMTools SNP 190017 190017 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold917 SAMTools SNP 192970 192970 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold917 SAMTools SNP 193387 193387 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.0057%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold917 SAMTools SNP 193802 193802 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.56%2C2.6e-13%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C197:99 scaffold917 SAMTools SNP 193870 193870 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C124:40 scaffold917 SAMTools SNP 194273 194273 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold917 SAMTools SNP 195047 195047 36.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C12%2C0:21 scaffold917 SAMTools SNP 195065 195065 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0373%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.17%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C107:99 scaffold917 SAMTools SNP 195092 195092 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold917 SAMTools SNP 195942 195942 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.42%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold917 SAMTools SNP 195963 195963 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.068%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold917 SAMTools SNP 196514 196514 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C29:32 scaffold917 SAMTools SNP 196520 196520 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold917 SAMTools SNP 196553 196553 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C10%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.5%2C1.4e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold917 SAMTools SNP 196837 196837 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C57:60 scaffold917 SAMTools SNP 196903 196903 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.1%2C0.0018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C110:56 scaffold917 SAMTools SNP 197389 197389 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold917 SAMTools SNP 197919 197919 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D47%3BFQ%3D77%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C137:99 scaffold917 SAMTools SNP 198217 198217 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold917 SAMTools SNP 198241 198241 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold917 SAMTools SNP 198819 198819 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold917 SAMTools SNP 199181 199181 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold917 SAMTools SNP 199184 199184 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0074%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold917 SAMTools SNP 199328 199328 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0281%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.4%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C115:56 scaffold917 SAMTools SNP 199349 199349 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold917 SAMTools SNP 203311 203311 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C26:29 scaffold917 SAMTools SNP 203407 203407 169 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold917 SAMTools SNP 203799 203799 175 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C24%2C0:45 scaffold917 SAMTools SNP 203903 203903 167 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.24%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C207:99 scaffold917 SAMTools SNP 204645 204645 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold917 SAMTools SNP 207195 207195 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold917 SAMTools SNP 207273 207273 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C124:59 scaffold917 SAMTools SNP 207333 207333 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold917 SAMTools SNP 208274 208274 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold917 SAMTools SNP 208610 208610 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold917 SAMTools SNP 209095 209095 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold917 SAMTools SNP 209858 209858 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold917 SAMTools SNP 210122 210122 28.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C15%2C0:27 scaffold917 SAMTools SNP 217962 217962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C44%2C5%2C38%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 219028 219028 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold917 SAMTools SNP 221113 221113 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C2%3BMQ%3D49%3BFQ%3D102%3BPV4%3D1%2C0.22%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold917 SAMTools SNP 221125 221125 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C8%2C1%3BMQ%3D49%3BFQ%3D98%3BPV4%3D0.38%2C8.5e-06%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold917 SAMTools SNP 221254 221254 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C1%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 221872 221872 63.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D1%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C0.036%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C14:17 scaffold917 SAMTools SNP 221879 221879 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold917 SAMTools SNP 221928 221928 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold917 SAMTools SNP 222033 222033 107 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C228:99 scaffold917 SAMTools SNP 222112 222112 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C4%2C16%2C0%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.57%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold917 SAMTools SNP 222694 222694 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C12%2C22%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 224176 224176 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C45%2C17%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.85%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold917 SAMTools SNP 224423 224423 125 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C32%2C0%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.18%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold917 SAMTools SNP 224639 224639 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C29%2C11%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D5.8e-06%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold917 SAMTools SNP 224864 224864 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C12%2C0%3BMQ%3D50%3BFQ%3D161%3BPV4%3D6.1e-05%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold917 SAMTools SNP 224888 224888 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C3%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.28%2C0.0046%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold917 SAMTools SNP 224903 224903 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C11%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.008%2C0.22%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold917 SAMTools SNP 225891 225891 17.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold917 SAMTools SNP 230485 230485 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C243:99 scaffold917 SAMTools SNP 230506 230506 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold917 SAMTools SNP 230536 230536 113 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold917 SAMTools SNP 230714 230714 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C14%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.0017%2C0.083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold917 SAMTools SNP 230759 230759 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold917 SAMTools SNP 230840 230840 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold917 SAMTools SNP 233007 233007 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold917 SAMTools SNP 236333 236333 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C15%2C0:27 scaffold917 SAMTools SNP 236340 236340 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold917 SAMTools SNP 236729 236729 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold917 SAMTools SNP 237190 237190 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D1%2C3.8e-11%2C1%2C0.0047;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C218:99 scaffold917 SAMTools SNP 237252 237252 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.7e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold917 SAMTools SNP 238322 238322 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold917 SAMTools SNP 259230 259230 32 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C1%3BMQ%3D35%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C131:65 scaffold917 SAMTools SNP 261662 261662 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold917 SAMTools SNP 261834 261834 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C31%2C5%2C4%3BMQ%3D28%3BFQ%3D108%3BPV4%3D0.11%2C1%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C225:99 scaffold917 SAMTools SNP 262450 262450 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C1%2C7%2C6%3BMQ%3D23%3BFQ%3D-39%3BPV4%3D0.33%2C0.053%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C12%2C0:21 scaffold917 SAMTools SNP 271424 271424 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold917 SAMTools SNP 272732 272732 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold917 SAMTools SNP 273515 273515 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold917 SAMTools SNP 274201 274201 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold917 SAMTools SNP 275239 275239 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold917 SAMTools SNP 275476 275476 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold917 SAMTools SNP 275524 275524 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold917 SAMTools SNP 275726 275726 88 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold917 SAMTools SNP 275744 275744 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold919 SAMTools SNP 3446 3446 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold919 SAMTools SNP 3455 3455 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold919 SAMTools SNP 3461 3461 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold919 SAMTools SNP 35186 35186 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold919 SAMTools SNP 41475 41475 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold919 SAMTools SNP 57925 57925 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold922 SAMTools SNP 27730 27730 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold922 SAMTools SNP 27781 27781 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold922 SAMTools SNP 27855 27855 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold922 SAMTools SNP 53916 53916 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold922 SAMTools SNP 89925 89925 13.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold922 SAMTools SNP 100299 100299 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold922 SAMTools SNP 100333 100333 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold922 SAMTools SNP 125604 125604 177 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold922 SAMTools SNP 125887 125887 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold922 SAMTools SNP 126235 126235 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold922 SAMTools SNP 126495 126495 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C41%2C0%2C12%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.33%2C1%2C1%2C0.0091;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold922 SAMTools SNP 126496 126496 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold922 SAMTools SNP 126503 126503 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold922 SAMTools SNP 129034 129034 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold922 SAMTools SNP 129339 129339 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold922 SAMTools SNP 129987 129987 216 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold922 SAMTools SNP 130045 130045 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 37664 37664 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 38778 38778 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 49656 49656 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 49663 49663 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold923 SAMTools SNP 49686 49686 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold923 SAMTools SNP 50116 50116 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold923 SAMTools SNP 50131 50131 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold923 SAMTools SNP 50741 50741 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 50750 50750 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 51152 51152 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold923 SAMTools SNP 51173 51173 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold923 SAMTools SNP 52334 52334 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold923 SAMTools SNP 53519 53519 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C1%2C7%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.26%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold923 SAMTools SNP 53528 53528 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C10%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C160:99 scaffold923 SAMTools SNP 53534 53534 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold923 SAMTools SNP 54023 54023 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold923 SAMTools SNP 54715 54715 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold923 SAMTools SNP 55647 55647 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.17%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold923 SAMTools SNP 56433 56433 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold923 SAMTools SNP 56877 56877 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold923 SAMTools SNP 56883 56883 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C22%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C53:56 scaffold923 SAMTools SNP 56937 56937 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold923 SAMTools SNP 56955 56955 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C54:57 scaffold923 SAMTools SNP 57641 57641 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold923 SAMTools SNP 58876 58876 39 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold923 SAMTools SNP 61105 61105 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold923 SAMTools SNP 61108 61108 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold923 SAMTools SNP 66343 66343 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold923 SAMTools SNP 66731 66731 202 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D205%3BPV4%3D7.2e-06%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold923 SAMTools SNP 66800 66800 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 66923 66923 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.28%2C1.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C206:99 scaffold923 SAMTools SNP 67079 67079 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold923 SAMTools SNP 67112 67112 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.64%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold923 SAMTools SNP 68329 68329 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold923 SAMTools SNP 68331 68331 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C0.25%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold923 SAMTools SNP 68355 68355 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.51%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold923 SAMTools SNP 69106 69106 94 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold923 SAMTools SNP 69125 69125 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C6%2C0%3BMQ%3D49%3BFQ%3D55%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold923 SAMTools SNP 69127 69127 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C12%2C0%3BMQ%3D49%3BFQ%3D130%3BPV4%3D1%2C0.13%2C0.25%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C157:99 scaffold923 SAMTools SNP 69166 69166 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C26%2C0%2C5%3BMQ%3D49%3BFQ%3D18.1%3BPV4%3D0.14%2C1%2C1%2C9.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold923 SAMTools SNP 69187 69187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D49%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold923 SAMTools SNP 71115 71115 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.14%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold923 SAMTools SNP 71139 71139 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C11:69 scaffold923 SAMTools SNP 71187 71187 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold923 SAMTools SNP 72475 72475 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold923 SAMTools SNP 149559 149559 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 150034 150034 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 150489 150489 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 151777 151777 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C31:34 scaffold923 SAMTools SNP 151780 151780 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 152474 152474 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:145%2C21%2C0:39 scaffold923 SAMTools SNP 152623 152623 25.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold923 SAMTools SNP 176180 176180 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1466%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold923 SAMTools SNP 176228 176228 114 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1719%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C36%2C0:69 scaffold923 SAMTools SNP 176336 176336 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.21%2C1.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C152:77 scaffold923 SAMTools SNP 176522 176522 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D368%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C13%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold923 SAMTools SNP 176575 176575 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1002%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D434%2C13%2C263%2C107%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2e-27%2C1.8e-05%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold923 SAMTools SNP 178577 178577 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C38%2C9%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold923 SAMTools SNP 178595 178595 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C58%2C8%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold923 SAMTools SNP 178637 178637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C36%2C63%3BMQ%3D50%3BFQ%3D-278%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C251%2C0:99 scaffold923 SAMTools SNP 181046 181046 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C41%3BMQ%3D49%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold923 SAMTools SNP 181074 181074 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D97%2C27%2C64%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00048%2C1%2C1%2C2.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold923 SAMTools SNP 182103 182103 6.17 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold923 SAMTools SNP 182623 182623 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D423%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C94%2C102%2C119%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.0055%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold923 SAMTools SNP 182638 182638 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D723%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C86%2C187%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold923 SAMTools SNP 183376 183376 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D181%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold923 SAMTools SNP 186351 186351 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold923 SAMTools SNP 191658 191658 23.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C24%2C0:41 scaffold923 SAMTools SNP 200305 200305 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold923 SAMTools SNP 200317 200317 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold923 SAMTools SNP 200808 200808 21.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold924 SAMTools SNP 16887 16887 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold924 SAMTools SNP 16895 16895 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold924 SAMTools SNP 16960 16960 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold924 SAMTools SNP 41318 41318 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold924 SAMTools SNP 68545 68545 78 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C2.1e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C74:77 scaffold925 SAMTools SNP 2897 2897 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 2928 2928 4.77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold925 SAMTools SNP 2985 2985 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 5110 5110 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C3%2C8%2C1%3BMQ%3D49%3BFQ%3D175%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold925 SAMTools SNP 5178 5178 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold925 SAMTools SNP 87359 87359 3.54 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold925 SAMTools SNP 99342 99342 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 106177 106177 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold925 SAMTools SNP 132991 132991 9.53 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold925 SAMTools SNP 155657 155657 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold925 SAMTools SNP 155678 155678 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold925 SAMTools SNP 155687 155687 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold925 SAMTools SNP 171056 171056 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold925 SAMTools SNP 172034 172034 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold925 SAMTools SNP 185853 185853 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold925 SAMTools SNP 186233 186233 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C13%2C33%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold925 SAMTools SNP 186263 186263 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C17%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold925 SAMTools SNP 186296 186296 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C61%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold925 SAMTools SNP 188202 188202 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold925 SAMTools SNP 188230 188230 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold925 SAMTools SNP 189922 189922 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C9%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold925 SAMTools SNP 189950 189950 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C7%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold925 SAMTools SNP 190134 190134 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold925 SAMTools SNP 191256 191256 91 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C210:99 scaffold925 SAMTools SNP 191295 191295 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold925 SAMTools SNP 194315 194315 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold925 SAMTools SNP 196095 196095 169 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C1%3BMQ%3D50%3BFQ%3D172%3BPV4%3D0.38%2C2.8e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C255:99 scaffold925 SAMTools SNP 196149 196149 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold925 SAMTools SNP 196462 196462 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C4%2C5%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.082%2C0.087%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold925 SAMTools SNP 196498 196498 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C215:99 scaffold925 SAMTools SNP 197305 197305 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold925 SAMTools SNP 197338 197338 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C175:99 scaffold925 SAMTools SNP 197449 197449 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold925 SAMTools SNP 201621 201621 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C4%2C48%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold925 SAMTools SNP 203717 203717 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold925 SAMTools SNP 205385 205385 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0054%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C24:27 scaffold925 SAMTools SNP 205662 205662 77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77.5%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C108:99 scaffold925 SAMTools SNP 205671 205671 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0185%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold925 SAMTools SNP 205738 205738 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C157:39 scaffold925 SAMTools SNP 205791 205791 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C8%2C1%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C106:99 scaffold925 SAMTools SNP 205939 205939 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.38%2C0.23%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C170:99 scaffold925 SAMTools SNP 206011 206011 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C9%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.075%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C161:99 scaffold925 SAMTools SNP 206172 206172 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold925 SAMTools SNP 206417 206417 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold925 SAMTools SNP 206438 206438 136 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C0.0089%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C124:99 scaffold925 SAMTools SNP 206546 206546 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C186:74 scaffold925 SAMTools SNP 206555 206555 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C204:88 scaffold925 SAMTools SNP 208455 208455 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 208762 208762 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold925 SAMTools SNP 208763 208763 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold925 SAMTools SNP 208767 208767 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold925 SAMTools SNP 275433 275433 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 301079 301079 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold925 SAMTools SNP 375063 375063 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 431077 431077 3.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold925 SAMTools SNP 431650 431650 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C7%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C121:88 scaffold925 SAMTools SNP 441564 441564 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 441766 441766 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold925 SAMTools SNP 491329 491329 41.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0094%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C6%2C0:10 scaffold925 SAMTools SNP 494048 494048 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold926 SAMTools SNP 1252 1252 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold926 SAMTools SNP 176549 176549 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold926 SAMTools SNP 176550 176550 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold926 SAMTools SNP 176727 176727 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold926 SAMTools SNP 176793 176793 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 176820 176820 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold926 SAMTools SNP 177043 177043 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 214673 214673 179 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C15%2C0:27 scaffold926 SAMTools SNP 266645 266645 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 266694 266694 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold926 SAMTools SNP 266736 266736 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold926 SAMTools SNP 269322 269322 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold926 SAMTools SNP 269735 269735 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 269870 269870 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 279207 279207 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 279731 279731 53.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold926 SAMTools SNP 279741 279741 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold926 SAMTools SNP 281688 281688 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold926 SAMTools SNP 283183 283183 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold926 SAMTools SNP 286690 286690 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold926 SAMTools SNP 287954 287954 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold929 SAMTools SNP 27303 27303 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C71:34 scaffold929 SAMTools SNP 77318 77318 215 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C0%2C80%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C1.5e-60%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold929 SAMTools SNP 77388 77388 75 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D346%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C36%2C0:69 scaffold929 SAMTools SNP 77452 77452 62.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D424%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C12%2C0:21 scaffold929 SAMTools SNP 77532 77532 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C43%2C10%2C1%3BMQ%3D50%3BFQ%3D132%3BPV4%3D4.6e-10%2C0.00013%2C1%2C9.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C232:99 scaffold929 SAMTools SNP 80191 80191 38 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.063%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold929 SAMTools SNP 80212 80212 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C12%2C8%3BMQ%3D50%3BFQ%3D-40%3BPV4%3D0.43%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C13%2C0:23 scaffold929 SAMTools SNP 80311 80311 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C12%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 80320 80320 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold929 SAMTools SNP 80666 80666 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D152%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C40%2C20%2C69%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.069%2C0.09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 81256 81256 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C11%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.016%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 81262 81262 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C12%2C34%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C2.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 82654 82654 202 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C18%3BMQ%3D50%3BFQ%3D-130;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C20:99 scaffold929 SAMTools SNP 82696 82696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C35%2C42%3BMQ%3D50%3BFQ%3D202%3BPV4%3D2.8e-09%2C5.2e-12%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold929 SAMTools SNP 82708 82708 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C43%2C2%2C12%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold929 SAMTools SNP 82865 82865 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D38%2C42%2C2%2C5%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.44%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold929 SAMTools SNP 82898 82898 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold929 SAMTools SNP 82901 82901 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C4%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold929 SAMTools SNP 82925 82925 158 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C36%2C11%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.0049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold929 SAMTools SNP 84601 84601 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D190%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C111%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold929 SAMTools SNP 84673 84673 21.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold929 SAMTools SNP 89847 89847 17.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C19%2C1%2C23%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.0075%2C1.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold929 SAMTools SNP 90291 90291 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold929 SAMTools SNP 91185 91185 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C21%2C21%2C43%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.24%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 91822 91822 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C109%2C2%2C72%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 92210 92210 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C3%2C21%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.48%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 92309 92309 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold929 SAMTools SNP 92318 92318 45.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold929 SAMTools SNP 92369 92369 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C16%2C24%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.38%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 92390 92390 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C15%2C32%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.5%2C1%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 92861 92861 218 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C0%2C32%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.012%2C0.34%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold929 SAMTools SNP 92918 92918 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.51%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold929 SAMTools SNP 92922 92922 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0144%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C7.9e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold929 SAMTools SNP 94211 94211 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C46%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.13%2C1%2C0.0086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 94220 94220 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C42%2C6%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 95038 95038 188 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C29%2C10%2C4%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold929 SAMTools SNP 95095 95095 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.28%2C0.36%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold929 SAMTools SNP 95476 95476 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C9%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 95506 95506 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C0%2C14%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.085%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold929 SAMTools SNP 95522 95522 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.24%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold929 SAMTools SNP 96489 96489 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.024%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C189:99 scaffold929 SAMTools SNP 96542 96542 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C17%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 100253 100253 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.21%2C0.15%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold929 SAMTools SNP 108189 108189 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C16%2C3%2C3%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C2.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold929 SAMTools SNP 110171 110171 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C12%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:177%2C220%2C0:99 scaffold929 SAMTools SNP 110453 110453 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold929 SAMTools SNP 110894 110894 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C12%2C8%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.72%2C6.8e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold929 SAMTools SNP 110968 110968 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0447%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C2%2C9%2C5%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.17%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C14:17 scaffold929 SAMTools SNP 111179 111179 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C14%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold929 SAMTools SNP 112097 112097 138 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C5%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:171%2C72%2C0:99 scaffold929 SAMTools SNP 112318 112318 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold929 SAMTools SNP 112374 112374 43 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.19%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold929 SAMTools SNP 113741 113741 35.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C18%2C0:33 scaffold929 SAMTools SNP 113756 113756 159 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C24%2C0:45 scaffold929 SAMTools SNP 113775 113775 156 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C212:99 scaffold929 SAMTools SNP 115278 115278 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C13%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold929 SAMTools SNP 115309 115309 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold929 SAMTools SNP 118144 118144 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.18%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C242:99 scaffold929 SAMTools SNP 118162 118162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold929 SAMTools SNP 118430 118430 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold929 SAMTools SNP 123148 123148 191 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.49%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C150:99 scaffold929 SAMTools SNP 126863 126863 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.36%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold929 SAMTools SNP 126905 126905 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold929 SAMTools SNP 127022 127022 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold929 SAMTools SNP 127046 127046 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold929 SAMTools SNP 146347 146347 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold929 SAMTools SNP 147869 147869 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold929 SAMTools SNP 147961 147961 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold929 SAMTools SNP 148825 148825 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold930 SAMTools SNP 172 172 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 16010 16010 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold930 SAMTools SNP 18434 18434 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold930 SAMTools SNP 18678 18678 25.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D29%3BFQ%3D-28%3BPV4%3D0.067%2C5.7e-06%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C1%2C0:4 scaffold930 SAMTools SNP 25537 25537 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 25564 25564 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 27852 27852 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 27855 27855 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 27960 27960 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 28669 28669 12.3 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D3.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C14%2C42%2C14%2C0%2C42:31 scaffold930 SAMTools SNP 29280 29280 166 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.34%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C119:99 scaffold930 SAMTools SNP 32692 32692 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0106%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold930 SAMTools SNP 32732 32732 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold930 SAMTools SNP 36144 36144 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D675%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C176%2C58%2C372%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.3e-06%2C4.4e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 38523 38523 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C67%3BMQ%3D49%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold930 SAMTools SNP 39332 39332 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C36%2C0:69 scaffold930 SAMTools SNP 40172 40172 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C3%2C30%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.042%2C1.5e-11%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold930 SAMTools SNP 40229 40229 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C0%2C12%2C1%3BMQ%3D38%3BFQ%3D35%3BPV4%3D0.27%2C0.00088%2C0.19%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C219:65 scaffold930 SAMTools SNP 40273 40273 142 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C34%2C8%2C13%3BMQ%3D40%3BFQ%3D145%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold930 SAMTools SNP 41150 41150 41.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C18%2C0:33 scaffold930 SAMTools SNP 41248 41248 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C46%2C2%2C7%3BMQ%3D42%3BFQ%3D11.3%3BPV4%3D1%2C0.00077%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C195:40 scaffold930 SAMTools SNP 44399 44399 7.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold930 SAMTools SNP 46790 46790 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold930 SAMTools SNP 46860 46860 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold930 SAMTools SNP 46878 46878 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold930 SAMTools SNP 47210 47210 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 48168 48168 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 48201 48201 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold930 SAMTools SNP 49492 49492 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.017%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold930 SAMTools SNP 49519 49519 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.56%2C0.21%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C154:99 scaffold930 SAMTools SNP 50916 50916 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C14%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.0049%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C125:99 scaffold930 SAMTools SNP 50922 50922 151 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold930 SAMTools SNP 51506 51506 20 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold930 SAMTools SNP 53863 53863 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C79:82 scaffold930 SAMTools SNP 53884 53884 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C0.054%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold930 SAMTools SNP 54116 54116 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold930 SAMTools SNP 54513 54513 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold930 SAMTools SNP 54713 54713 119 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold930 SAMTools SNP 54727 54727 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold930 SAMTools SNP 54778 54778 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold930 SAMTools SNP 58868 58868 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold930 SAMTools SNP 58964 58964 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold930 SAMTools SNP 59171 59171 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold930 SAMTools SNP 59185 59185 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.042%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold930 SAMTools SNP 66340 66340 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold930 SAMTools SNP 66435 66435 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 71177 71177 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold930 SAMTools SNP 82060 82060 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C58:61 scaffold930 SAMTools SNP 82100 82100 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold930 SAMTools SNP 82411 82411 15.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.0064%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold930 SAMTools SNP 85157 85157 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold930 SAMTools SNP 85198 85198 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold930 SAMTools SNP 85200 85200 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.029%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold930 SAMTools SNP 88359 88359 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 89403 89403 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.24%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold930 SAMTools SNP 89474 89474 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C182:99 scaffold930 SAMTools SNP 90636 90636 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold930 SAMTools SNP 90657 90657 215 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C4%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.2%2C0.17%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C150:99 scaffold930 SAMTools SNP 104967 104967 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold930 SAMTools SNP 107399 107399 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold930 SAMTools SNP 109289 109289 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 109303 109303 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 112607 112607 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 116340 116340 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 116348 116348 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 118498 118498 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold930 SAMTools SNP 118499 118499 123 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.11%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C205:99 scaffold930 SAMTools SNP 118534 118534 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C94%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold930 SAMTools SNP 120788 120788 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C105:28 scaffold930 SAMTools SNP 121146 121146 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C10%2C30%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 121271 121271 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C18%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.081%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 122636 122636 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D198%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C236:99 scaffold930 SAMTools SNP 122668 122668 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold930 SAMTools SNP 127197 127197 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 127217 127217 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 136215 136215 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 136970 136970 6.98 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold930 SAMTools SNP 137102 137102 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C6%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold930 SAMTools SNP 137277 137277 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold930 SAMTools SNP 137358 137358 115 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C18%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C129%2C0:99 scaffold930 SAMTools SNP 137451 137451 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C81%2C0:99 scaffold930 SAMTools SNP 137800 137800 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold930 SAMTools SNP 141011 141011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold930 SAMTools SNP 142438 142438 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold930 SAMTools SNP 143806 143806 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C44%2C0%2C47%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C5.8e-104%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold930 SAMTools SNP 148108 148108 189 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C9%2C16%2C4%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.25%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold930 SAMTools SNP 149871 149871 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D116%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C16%2C14%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.075%2C0.31%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 149892 149892 184 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C43%2C3%2C21%3BMQ%3D50%3BFQ%3D187%3BPV4%3D8.2e-05%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold930 SAMTools SNP 151166 151166 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C20%2C32%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 151419 151419 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C22%2C29%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.8e-06%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 153498 153498 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C10%2C5%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C162:99 scaffold930 SAMTools SNP 154201 154201 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold930 SAMTools SNP 154570 154570 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C240:73 scaffold930 SAMTools SNP 158024 158024 68 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C11%2C3%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.64%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold930 SAMTools SNP 158033 158033 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D26%2C25%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0046%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold930 SAMTools SNP 158111 158111 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C50%2C12%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 158156 158156 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C26%2C15%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 159111 159111 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C22%2C6%2C0%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold930 SAMTools SNP 159113 159113 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C22%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C91:99 scaffold930 SAMTools SNP 159337 159337 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C21%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 159388 159388 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C2%2C55%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 160130 160130 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C42%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold930 SAMTools SNP 160534 160534 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C19%2C0%2C6%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.071%2C0.34%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold930 SAMTools SNP 165942 165942 25.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold930 SAMTools SNP 166824 166824 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C79%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold930 SAMTools SNP 167243 167243 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C44%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.067%2C0.24%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 167273 167273 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0003%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 169152 169152 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold930 SAMTools SNP 170290 170290 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C28%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold930 SAMTools SNP 171032 171032 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C27%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold930 SAMTools SNP 171050 171050 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C36%2C4%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.047%2C0.42%2C1%2C0.00022;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold930 SAMTools SNP 171068 171068 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C28%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold930 SAMTools SNP 172523 172523 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C55%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C199%2C0:99 scaffold930 SAMTools SNP 175916 175916 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C2e-06%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold930 SAMTools SNP 175988 175988 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.0004;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold930 SAMTools SNP 176425 176425 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold930 SAMTools SNP 176745 176745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 176757 176757 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 178498 178498 3.41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold930 SAMTools SNP 181866 181866 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 181870 181870 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 181935 181935 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold930 SAMTools SNP 182523 182523 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold930 SAMTools SNP 183384 183384 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold930 SAMTools SNP 185140 185140 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 188208 188208 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold930 SAMTools SNP 216956 216956 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C27%2C0:51 scaffold930 SAMTools SNP 217353 217353 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C1%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C72%2C0:99 scaffold930 SAMTools SNP 218979 218979 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold930 SAMTools SNP 218999 218999 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 222019 222019 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold930 SAMTools SNP 225070 225070 43.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0170%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C6%2C0:10 scaffold930 SAMTools SNP 230211 230211 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold930 SAMTools SNP 232507 232507 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold930 SAMTools SNP 232529 232529 204 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C23%2C0%3BMQ%3D49%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C38:41 scaffold930 SAMTools SNP 232568 232568 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C3%2C1%3BMQ%3D49%3BFQ%3D43%3BPV4%3D0.15%2C1%2C0.0067%2C0.0067;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C234:73 scaffold930 SAMTools SNP 233168 233168 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D24%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C27%2C0:51 scaffold930 SAMTools SNP 233189 233189 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C23%3BMQ%3D45%3BFQ%3D46%3BPV4%3D0.00063%2C1%2C1%2C0.0048;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C73:76 scaffold930 SAMTools SNP 233516 233516 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0297%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C6%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D1%2C0.0097%2C2.5e-05%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C237:36 scaffold930 SAMTools SNP 233849 233849 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0284%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.6e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C218:33 scaffold930 SAMTools SNP 234052 234052 91.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D45%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C15%2C0:27 scaffold930 SAMTools SNP 234185 234185 60 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold930 SAMTools SNP 234187 234187 6.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold930 SAMTools SNP 235044 235044 23.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold930 SAMTools SNP 235213 235213 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C3%3BMQ%3D26%3BFQ%3D11.3%3BPV4%3D0.55%2C1%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C78:40 scaffold930 SAMTools SNP 235433 235433 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C1%3BMQ%3D42%3BFQ%3D42%3BPV4%3D1%2C1%2C0.0028%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C216:72 scaffold930 SAMTools SNP 235457 235457 5.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C1%3BMQ%3D41%3BFQ%3D7.8%3BPV4%3D1%2C1%2C0.00035%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C218:34 scaffold930 SAMTools SNP 235544 235544 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C5%3BMQ%3D43%3BFQ%3D44%3BPV4%3D1%2C1%2C0.012%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C172:74 scaffold930 SAMTools SNP 235755 235755 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C6%3BMQ%3D43%3BFQ%3D44%3BPV4%3D1%2C0.092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C71:74 scaffold930 SAMTools SNP 235794 235794 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold930 SAMTools SNP 236073 236073 59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C9%2C0:16 scaffold930 SAMTools SNP 236092 236092 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:158%2C18%2C0:33 scaffold930 SAMTools SNP 236391 236391 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C185:34 scaffold932 SAMTools SNP 54142 54142 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C9%2C0:16 scaffold932 SAMTools SNP 72903 72903 64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C33%2C0:63 scaffold932 SAMTools SNP 73942 73942 78 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.48%2C1.4e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold932 SAMTools SNP 75318 75318 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C15%2C29%2C15%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.23%2C0.00092%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 75474 75474 7.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold932 SAMTools SNP 76343 76343 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold932 SAMTools SNP 76465 76465 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C52%2C27%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 76900 76900 131 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C21%2C16%2C5%3BMQ%3D50%3BFQ%3D134%3BPV4%3D0.54%2C0.14%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold932 SAMTools SNP 77357 77357 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D179%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C57%2C27%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.0012%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 77772 77772 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C28%2C5%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 77799 77799 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold932 SAMTools SNP 79842 79842 98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C20%2C5%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.071%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold932 SAMTools SNP 80618 80618 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C14%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold932 SAMTools SNP 80642 80642 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C1%2C8%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.061%2C0.069%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold932 SAMTools SNP 81290 81290 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C41%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold932 SAMTools SNP 81606 81606 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C51%3BMQ%3D49%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold932 SAMTools SNP 81717 81717 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C19%2C7%3BMQ%3D48%3BFQ%3D128%3BPV4%3D0.16%2C0.021%2C0.22%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold932 SAMTools SNP 82799 82799 209 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C13%2C2%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.12%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold932 SAMTools SNP 82824 82824 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold932 SAMTools SNP 82887 82887 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C20%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold932 SAMTools SNP 82935 82935 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C22%2C17%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C110:99 scaffold932 SAMTools SNP 83617 83617 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C2%2C11%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1.9e-05%2C5.4e-05%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold932 SAMTools SNP 83650 83650 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C20%2C33%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-05%2C0.34%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 83695 83695 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C28%2C30%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0011%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 85186 85186 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold932 SAMTools SNP 88576 88576 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C24%2C7%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 88625 88625 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C8%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 93687 93687 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold932 SAMTools SNP 93702 93702 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold932 SAMTools SNP 93723 93723 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold932 SAMTools SNP 95535 95535 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.14%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C134:99 scaffold932 SAMTools SNP 95562 95562 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold932 SAMTools SNP 96581 96581 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold932 SAMTools SNP 96619 96619 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold932 SAMTools SNP 97606 97606 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D49.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C86:79 scaffold932 SAMTools SNP 100054 100054 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C7%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold932 SAMTools SNP 100057 100057 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.24%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold932 SAMTools SNP 100084 100084 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C0%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D0.48%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold932 SAMTools SNP 100132 100132 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C3%3BMQ%3D37%3BFQ%3D26%3BPV4%3D0.49%2C0.013%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C81:56 scaffold932 SAMTools SNP 101831 101831 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C12%2C27%2C5%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.019%2C0.12%2C0.056%2C3.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 101849 101849 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C18%2C7%2C0%3BMQ%3D49%3BFQ%3D85%3BPV4%3D2.1e-06%2C2.2e-06%2C0.055%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold932 SAMTools SNP 103074 103074 3.24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-34%3BPV4%3D0.053%2C4.5e-13%2C1%2C7.1e-10;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C7%2C0:5 scaffold932 SAMTools SNP 110033 110033 41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C6.8e-07%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C126:74 scaffold932 SAMTools SNP 110110 110110 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C9%2C31%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 110479 110479 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C6%2C132%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 110524 110524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D223%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C136%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold932 SAMTools SNP 111103 111103 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D295%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C57%2C38%2C170%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0086%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 111141 111141 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D207%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C92%2C20%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 114467 114467 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C18%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold932 SAMTools SNP 114479 114479 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C33%2C10%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.081%2C1%2C1%2C5e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold932 SAMTools SNP 114533 114533 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C51%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold932 SAMTools SNP 115532 115532 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C20%2C6%2C2%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.013%2C0.0031%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold932 SAMTools SNP 115561 115561 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C17%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.018%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 115594 115594 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C11%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold932 SAMTools SNP 115924 115924 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C8%3BMQ%3D50%3BFQ%3D202%3BPV4%3D1%2C1%2C1%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold932 SAMTools SNP 118167 118167 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold932 SAMTools SNP 121592 121592 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D297%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C147%2C26%2C54%3BMQ%3D39%3BFQ%3D225%3BPV4%3D0.57%2C1%2C0.44%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 121628 121628 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D216%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C86%2C44%2C12%3BMQ%3D44%3BFQ%3D225%3BPV4%3D2.3e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold932 SAMTools SNP 122538 122538 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D277%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C95%2C73%2C15%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1.5e-09%2C1.9e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold932 SAMTools SNP 127313 127313 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C36%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold932 SAMTools SNP 127684 127684 68 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C3%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.59%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold932 SAMTools SNP 131844 131844 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.44%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C185:31 scaffold932 SAMTools SNP 131867 131867 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold932 SAMTools SNP 132762 132762 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0151%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D57.9%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C100:88 scaffold932 SAMTools SNP 135417 135417 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C88:40 scaffold932 SAMTools SNP 135488 135488 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold932 SAMTools SNP 137751 137751 163 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C3%3BMQ%3D50%3BFQ%3D-6.18%3BPV4%3D1%2C0.24%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C30%2C52%2C166%2C0%2C199:25 scaffold932 SAMTools SNP 138119 138119 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C160:99 scaffold932 SAMTools SNP 138457 138457 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D53.9%3BPV4%3D0.4%2C0.087%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C85:84 scaffold932 SAMTools SNP 139361 139361 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold932 SAMTools SNP 139363 139363 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold932 SAMTools SNP 141663 141663 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.044%2C0.14%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold932 SAMTools SNP 144602 144602 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold932 SAMTools SNP 144841 144841 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2705%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C206%2C2287%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.083%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold932 SAMTools SNP 146171 146171 184 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D779%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C4%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:217%2C135%2C0%2C208%2C109%2C205:99 scaffold933 SAMTools SNP 8586 8586 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C79%2C46%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 8749 8749 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold933 SAMTools SNP 8961 8961 3.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold933 SAMTools SNP 9105 9105 90 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C2%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C78%2C0:99 scaffold933 SAMTools SNP 9201 9201 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C10%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C93%2C0:99 scaffold933 SAMTools SNP 9313 9313 41 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C48%2C0:85 scaffold933 SAMTools SNP 11632 11632 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold933 SAMTools SNP 11695 11695 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C42%2C2%2C34%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.039%2C5.8e-94%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold933 SAMTools SNP 12844 12844 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1212%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C57%2C984%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 12866 12866 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D359%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C71%2C116%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.38%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 14126 14126 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D266%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C142%2C2%2C51%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold933 SAMTools SNP 16157 16157 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 21224 21224 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold933 SAMTools SNP 21435 21435 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C63%2C0:98 scaffold933 SAMTools SNP 21846 21846 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold933 SAMTools SNP 30518 30518 6.17 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold933 SAMTools SNP 32454 32454 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C10%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.14%2C0.0019%2C1%2C0.0041;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold933 SAMTools SNP 32978 32978 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D228%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C77%2C4%2C37%3BMQ%3D50%3BFQ%3D165%3BPV4%3D3.7e-06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold933 SAMTools SNP 32993 32993 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C33%2C162%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.17%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 34327 34327 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C9%2C0:16 scaffold933 SAMTools SNP 35713 35713 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C51%2C14%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.2e-05%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 37786 37786 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C25%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.42%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 38284 38284 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C38%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C0.07%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 39311 39311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C42%2C16%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 39314 39314 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C55%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 39735 39735 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D208%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C64%2C36%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 41881 41881 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C24%2C0:45 scaffold933 SAMTools SNP 43976 43976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C107%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 43985 43985 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C58%2C11%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0017%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 47929 47929 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C68%3BMQ%3D24%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold933 SAMTools SNP 48556 48556 164 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C20%2C38%2C0%3BMQ%3D50%3BFQ%3D167%3BPV4%3D0.00041%2C0.025%2C1%2C3.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C255:99 scaffold933 SAMTools SNP 48706 48706 120 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C7%2C0%3BMQ%3D44%3BFQ%3D123%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C230:99 scaffold933 SAMTools SNP 48742 48742 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C14%2C7%3BMQ%3D45%3BFQ%3D175%3BPV4%3D0.39%2C1%2C0.00023%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold933 SAMTools SNP 49258 49258 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C31%2C0%2C6%3BMQ%3D48%3BFQ%3D18.1%3BPV4%3D1%2C0.49%2C2.3e-06%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold933 SAMTools SNP 51027 51027 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold933 SAMTools SNP 58524 58524 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold933 SAMTools SNP 65565 65565 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold933 SAMTools SNP 66330 66330 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D155%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C48%2C0%2C107%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C194:99 scaffold933 SAMTools SNP 68608 68608 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 69044 69044 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C8%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold933 SAMTools SNP 70169 70169 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C17%2C108%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 70187 70187 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C110%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 70950 70950 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C7%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 71888 71888 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold933 SAMTools SNP 71891 71891 97 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.039%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold933 SAMTools SNP 71897 71897 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold933 SAMTools SNP 71933 71933 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold933 SAMTools SNP 74685 74685 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 74999 74999 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C3%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C0.086%2C1%2C0.00035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C188:99 scaffold933 SAMTools SNP 75023 75023 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C200:99 scaffold933 SAMTools SNP 75402 75402 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D201%3BPV4%3D0.29%2C0.023%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold933 SAMTools SNP 75411 75411 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C4%2C5%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C212:99 scaffold933 SAMTools SNP 75839 75839 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C0.062%2C1%2C0.0028;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold933 SAMTools SNP 75863 75863 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold933 SAMTools SNP 76671 76671 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold933 SAMTools SNP 76689 76689 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold933 SAMTools SNP 76722 76722 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold933 SAMTools SNP 77159 77159 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold933 SAMTools SNP 79491 79491 14.7 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold933 SAMTools SNP 86990 86990 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold933 SAMTools SNP 89619 89619 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold933 SAMTools SNP 89646 89646 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C87:43 scaffold933 SAMTools SNP 89682 89682 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.084%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold933 SAMTools SNP 89703 89703 47 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold933 SAMTools SNP 89960 89960 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.58%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold933 SAMTools SNP 91300 91300 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold933 SAMTools SNP 91304 91304 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold933 SAMTools SNP 94322 94322 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 94333 94333 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 94427 94427 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 94611 94611 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 95513 95513 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold933 SAMTools SNP 97587 97587 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold933 SAMTools SNP 99954 99954 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 100016 100016 81 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold933 SAMTools SNP 100022 100022 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold933 SAMTools SNP 101251 101251 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold933 SAMTools SNP 105841 105841 81 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C15%2C9%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.5%2C2.7e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold933 SAMTools SNP 106559 106559 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C12%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold933 SAMTools SNP 107997 107997 7.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold933 SAMTools SNP 108104 108104 58 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C30%2C0:57 scaffold933 SAMTools SNP 108768 108768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold933 SAMTools SNP 109513 109513 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C9%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.3%2C0.31%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold933 SAMTools SNP 109531 109531 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C156:99 scaffold933 SAMTools SNP 109618 109618 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D20%2C9%2C10%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.079%2C2.9e-08%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold933 SAMTools SNP 111295 111295 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold933 SAMTools SNP 111814 111814 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold933 SAMTools SNP 111868 111868 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold933 SAMTools SNP 112950 112950 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold933 SAMTools SNP 115072 115072 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold933 SAMTools SNP 115320 115320 83 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.18%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C221:99 scaffold933 SAMTools SNP 115350 115350 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold933 SAMTools SNP 115524 115524 38 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0031%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C35:38 scaffold933 SAMTools SNP 115550 115550 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C64%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C211%2C0:99 scaffold933 SAMTools SNP 116149 116149 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C22%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 116168 116168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C22%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 116201 116201 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C9%2C0:16 scaffold933 SAMTools SNP 117544 117544 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C6%2C5%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.63%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold933 SAMTools SNP 117662 117662 152 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold933 SAMTools SNP 117814 117814 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold933 SAMTools SNP 117828 117828 77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold933 SAMTools SNP 118679 118679 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C3%2C3%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.65%2C0.12%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C255:99 scaffold933 SAMTools SNP 119231 119231 199 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C2%2C5%3BMQ%3D49%3BFQ%3D202%3BPV4%3D0.62%2C0.19%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C255:99 scaffold933 SAMTools SNP 123495 123495 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C5%3BMQ%3D47%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 123570 123570 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold933 SAMTools SNP 123580 123580 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C9%2C0:15 scaffold933 SAMTools SNP 133741 133741 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold933 SAMTools SNP 186030 186030 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D409%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C227%2C181%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 190933 190933 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D348%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C141%2C45%2C111%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 190956 190956 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C90%2C250%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 191969 191969 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D305%2C7%2C134%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 192852 192852 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold933 SAMTools SNP 192962 192962 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C21%2C0:34 scaffold933 SAMTools SNP 195274 195274 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold933 SAMTools SNP 229044 229044 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 229046 229046 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 229107 229107 51.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C15%2C0:27 scaffold933 SAMTools SNP 246327 246327 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold933 SAMTools SNP 246357 246357 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold933 SAMTools SNP 246498 246498 160 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold933 SAMTools SNP 246510 246510 69 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold933 SAMTools SNP 246786 246786 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold933 SAMTools SNP 260659 260659 18.6 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold933 SAMTools SNP 270058 270058 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold933 SAMTools SNP 272613 272613 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 275199 275199 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 280778 280778 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.31%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold933 SAMTools SNP 280802 280802 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D472%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D344%2C0%2C128%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold933 SAMTools SNP 280808 280808 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D613%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D261%2C0%2C340%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 281302 281302 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D597%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C570%2C17%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 281374 281374 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D798%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C177%2C406%3BMQ%3D45%3BFQ%3D-282%3BPV4%3D0.3%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 281407 281407 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D694%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C231%2C194%2C202%3BMQ%3D45%3BFQ%3D225%3BPV4%3D4.8e-27%2C1%2C3.3e-19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 281825 281825 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D412%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D240%2C54%2C49%2C5%3BMQ%3D48%3BFQ%3D21%3BPV4%3D0.12%2C0.14%2C0.0016%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold933 SAMTools SNP 281829 281829 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D416%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D103%2C10%2C95%2C6%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.45%2C1%2C0.22%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 281830 281830 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D426%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C10%2C96%2C16%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.3%2C0.0017%2C0.0017%2C0.0019;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 282532 282532 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1402%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D964%2C153%2C263%2C22%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.0065%2C7.6e-11%2C0.29%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold933 SAMTools SNP 282539 282539 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1408%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D965%2C158%2C247%2C25%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.035%2C1%2C0.062%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold933 SAMTools SNP 283086 283086 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 283112 283112 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1092%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D145%2C100%2C646%2C126%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.7e-14%2C1%2C1%2C0.00049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 283156 283156 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1333%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C889%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 283210 283210 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1044%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C199%2C0%2C657%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C45:48 scaffold933 SAMTools SNP 287054 287054 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold933 SAMTools SNP 287847 287847 31.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold933 SAMTools SNP 294250 294250 5.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D12%2C0%2C14%2C0%3BMQ%3D10%3BFQ%3D-34%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C7%2C0:7 scaffold933 SAMTools SNP 295719 295719 86.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D38%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:119%2C21%2C0:39 scaffold933 SAMTools SNP 295734 295734 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D40%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:240%2C51%2C0:99 scaffold933 SAMTools SNP 295755 295755 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C5%2C83%2C0%3BMQ%3D47%3BFQ%3D-119%3BPV4%3D1.4e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C92%2C0:99 scaffold933 SAMTools SNP 296397 296397 176 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D711%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D424%2C154%2C86%2C46%3BMQ%3D49%3BFQ%3D179%3BPV4%3D0.068%2C0.0049%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold933 SAMTools SNP 296698 296698 162 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D703%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D412%2C173%2C67%2C50%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.0065%2C2.2e-07%2C0.059%2C8.7e-24;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold933 SAMTools SNP 296725 296725 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D494%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C319%2C104%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 296770 296770 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D438%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C85%2C9%2C252%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.46%2C7.9e-11%2C1%2C1.9e-36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold933 SAMTools SNP 308920 308920 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D1%2C0.0025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold933 SAMTools SNP 309131 309131 8.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold933 SAMTools SNP 315955 315955 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold933 SAMTools SNP 315968 315968 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold933 SAMTools SNP 315992 315992 195 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C0.19%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C217:99 scaffold933 SAMTools SNP 317011 317011 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold933 SAMTools SNP 317034 317034 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C4%2C36%2C0%3BMQ%3D41%3BFQ%3D79%3BPV4%3D0.3%2C1%2C1.2e-13%2C6.4e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold933 SAMTools SNP 317625 317625 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D517%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C437%2C79%3BMQ%3D21%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold933 SAMTools SNP 317943 317943 87.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C59%2C5%2C33%3BMQ%3D12%3BFQ%3D-46%3BPV4%3D0.0078%2C0.29%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C19%2C0:35 scaffold933 SAMTools SNP 318006 318006 29.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C12%2C0:21 scaffold933 SAMTools SNP 318693 318693 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C6%2C43%3BMQ%3D24%3BFQ%3D-112%3BPV4%3D7.4e-06%2C1%2C1%2C0.00088;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C85%2C0:99 scaffold933 SAMTools SNP 318708 318708 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C6%2C14%3BMQ%3D35%3BFQ%3D-47%3BPV4%3D0.0019%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C20%2C0:37 scaffold933 SAMTools SNP 319550 319550 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 319556 319556 89 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold933 SAMTools SNP 319721 319721 4.46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C1%2C0%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C4%2C0:4 scaffold933 SAMTools SNP 320072 320072 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold933 SAMTools SNP 327422 327422 22 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C9%3BMQ%3D49%3BFQ%3D25%3BPV4%3D0.063%2C1.1e-10%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold933 SAMTools SNP 327865 327865 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C38%2C0%2C10%3BMQ%3D32%3BFQ%3D30%3BPV4%3D1%2C4e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C164:60 scaffold933 SAMTools SNP 327869 327869 122 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C1%2C15%3BMQ%3D41%3BFQ%3D125%3BPV4%3D1%2C1%2C0.00017%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C209:99 scaffold933 SAMTools SNP 328708 328708 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C30%2C40%3BMQ%3D49%3BFQ%3D214%3BPV4%3D0.0009%2C2.1e-05%2C0.11%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold933 SAMTools SNP 328744 328744 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C15%2C68%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C0.1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 338632 338632 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold933 SAMTools SNP 341626 341626 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C38:41 scaffold933 SAMTools SNP 342073 342073 31.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C12%2C0:21 scaffold933 SAMTools SNP 342198 342198 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold933 SAMTools SNP 342739 342739 47 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C9%2C0:16 scaffold933 SAMTools SNP 342775 342775 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold933 SAMTools SNP 343089 343089 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C44:33 scaffold933 SAMTools SNP 343122 343122 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold933 SAMTools SNP 343191 343191 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold933 SAMTools SNP 343516 343516 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold933 SAMTools SNP 344011 344011 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold933 SAMTools SNP 348577 348577 19.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold933 SAMTools SNP 355726 355726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C0%2C126%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C0.0001%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C201:99 scaffold933 SAMTools SNP 355738 355738 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C1%2C1%2C0.00074;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C241:99 scaffold933 SAMTools SNP 355779 355779 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C182%2C20%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C7.8e-05%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 355792 355792 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D352%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C91%2C61%2C180%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 355798 355798 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D357%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C188%2C19%2C88%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 356182 356182 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C66%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 356196 356196 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C66%2C5%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 356431 356431 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C2%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D4.4e-06%2C0.28%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 356491 356491 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C10%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold933 SAMTools SNP 356738 356738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C26%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold933 SAMTools SNP 356786 356786 147 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C17%2C0%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.38%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold933 SAMTools SNP 356799 356799 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C230:48 scaffold933 SAMTools SNP 359679 359679 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C16%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0083%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 359730 359730 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C47%2C19%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00072%2C0.44%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 360548 360548 35 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C13%2C0%2C4%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.1%2C1%2C1%2C0.00065;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold933 SAMTools SNP 360600 360600 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold933 SAMTools SNP 360603 360603 192 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold933 SAMTools SNP 360654 360654 67 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C18%2C4%2C1%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.34%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold933 SAMTools SNP 361962 361962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C5%2C37%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold933 SAMTools SNP 361980 361980 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C14%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold933 SAMTools SNP 363340 363340 31 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C41:44 scaffold934 SAMTools SNP 19866 19866 47.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold934 SAMTools SNP 22482 22482 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold934 SAMTools SNP 22492 22492 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold934 SAMTools SNP 22494 22494 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold934 SAMTools SNP 23313 23313 30.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C15%2C0:27 scaffold934 SAMTools SNP 23517 23517 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold934 SAMTools SNP 24224 24224 49 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C160:82 scaffold934 SAMTools SNP 24236 24236 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.47%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold934 SAMTools SNP 24306 24306 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 27037 27037 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 29912 29912 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D31%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C24%2C0:45 scaffold934 SAMTools SNP 31086 31086 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 31935 31935 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C28%3BMQ%3D50%3BFQ%3D-91%3BPV4%3D1%2C3.2e-17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C64%2C0:99 scaffold934 SAMTools SNP 31972 31972 44 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C9%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C3e-36%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold934 SAMTools SNP 32265 32265 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D123%2C5%2C179%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 36307 36307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C5%2C104%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.098%2C0.25%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 36348 36348 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D355%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C226%2C2%2C124%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.62%2C4.8e-123%2C1%2C3.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold934 SAMTools SNP 36657 36657 74 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.0011%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C38:41 scaffold934 SAMTools SNP 43726 43726 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold934 SAMTools SNP 45808 45808 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C9%2C14%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.14%2C4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold934 SAMTools SNP 46228 46228 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C23%2C29%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.074%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 57708 57708 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D293%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C274%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold934 SAMTools SNP 60943 60943 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C10%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold934 SAMTools SNP 61036 61036 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C39%2C7%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 61339 61339 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C39%2C16%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 61360 61360 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C46%2C15%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D0.26%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold934 SAMTools SNP 61825 61825 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C44%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold934 SAMTools SNP 63485 63485 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C12%2C46%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 63494 63494 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold934 SAMTools SNP 63512 63512 111 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C24%2C0%2C9%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.044%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold934 SAMTools SNP 63533 63533 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C80%2C0%2C57%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold934 SAMTools SNP 64539 64539 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold934 SAMTools SNP 64542 64542 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold934 SAMTools SNP 65212 65212 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C5%2C10%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C0.18%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 65248 65248 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold934 SAMTools SNP 66913 66913 70 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C46%2C0%2C8%3BMQ%3D50%3BFQ%3D73%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold934 SAMTools SNP 66915 66915 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.15%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold934 SAMTools SNP 66954 66954 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold934 SAMTools SNP 67155 67155 14.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C15%2C0:24 scaffold934 SAMTools SNP 73963 73963 45.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold934 SAMTools SNP 74185 74185 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold934 SAMTools SNP 74229 74229 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold934 SAMTools SNP 74284 74284 50 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D3.8e-05%2C1.5e-08%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C239:83 scaffold934 SAMTools SNP 76232 76232 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C14%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold934 SAMTools SNP 77968 77968 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C27%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold934 SAMTools SNP 78001 78001 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C4%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold934 SAMTools SNP 82137 82137 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold934 SAMTools SNP 82387 82387 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold934 SAMTools SNP 82543 82543 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold934 SAMTools SNP 82670 82670 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold934 SAMTools SNP 84525 84525 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold934 SAMTools SNP 87329 87329 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold934 SAMTools SNP 87343 87343 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold934 SAMTools SNP 87551 87551 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold934 SAMTools SNP 87575 87575 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C3%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.054%2C0.053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold934 SAMTools SNP 87668 87668 44.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold934 SAMTools SNP 106079 106079 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C39%2C0:75 scaffold934 SAMTools SNP 109419 109419 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 109690 109690 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 111190 111190 67 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.6%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold934 SAMTools SNP 111298 111298 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold934 SAMTools SNP 111552 111552 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C171:99 scaffold934 SAMTools SNP 111689 111689 44.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C18%2C0:33 scaffold934 SAMTools SNP 114833 114833 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold934 SAMTools SNP 120121 120121 19.6 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold934 SAMTools SNP 121917 121917 190 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C48%2C0:93 scaffold934 SAMTools SNP 122015 122015 35 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C39%2C0:70 scaffold934 SAMTools SNP 122363 122363 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0064%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D9%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.32%2C0.016%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C254:30 scaffold934 SAMTools SNP 122400 122400 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C5%2C7%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.11%2C0.059%2C1%2C0.071;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C174:99 scaffold934 SAMTools SNP 122796 122796 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold934 SAMTools SNP 122921 122921 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 123146 123146 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold934 SAMTools SNP 123965 123965 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold934 SAMTools SNP 137615 137615 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold934 SAMTools SNP 137644 137644 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold934 SAMTools SNP 137652 137652 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold934 SAMTools SNP 137696 137696 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold934 SAMTools SNP 140508 140508 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0086%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C1%2C2%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.4%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold934 SAMTools SNP 150452 150452 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.058%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold934 SAMTools SNP 151046 151046 3.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold934 SAMTools SNP 154178 154178 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold934 SAMTools SNP 154280 154280 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold934 SAMTools SNP 164555 164555 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold934 SAMTools SNP 165609 165609 4.11 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold934 SAMTools SNP 165735 165735 3.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold934 SAMTools SNP 183262 183262 4.61 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold934 SAMTools SNP 276052 276052 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold934 SAMTools SNP 282801 282801 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C77:43 scaffold934 SAMTools SNP 286222 286222 21.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold934 SAMTools SNP 335097 335097 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold934 SAMTools SNP 335113 335113 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold934 SAMTools SNP 342950 342950 85 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold934 SAMTools SNP 343010 343010 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C233:71 scaffold934 SAMTools SNP 343083 343083 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C3%2C7%2C19%3BMQ%3D48%3BFQ%3D225%3BPV4%3D1.4e-08%2C1%2C0.00037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 343213 343213 38.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C21%2C0:39 scaffold934 SAMTools SNP 344913 344913 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold934 SAMTools SNP 347820 347820 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D128%2C107%2C117%2C53%3BMQ%3D28%3BFQ%3D165%3BPV4%3D0.0039%2C1%2C0.013%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C217:99 scaffold934 SAMTools SNP 388692 388692 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold934 SAMTools SNP 389116 389116 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C2%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold934 SAMTools SNP 389497 389497 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D150%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C25%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold934 SAMTools SNP 390014 390014 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C60%2C37%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.087%2C0.35%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold934 SAMTools SNP 390038 390038 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C84%2C8%2C15%3BMQ%3D48%3BFQ%3D218%3BPV4%3D0.44%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold934 SAMTools SNP 390486 390486 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C20%2C6%2C1%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.4%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold934 SAMTools SNP 391961 391961 198 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C15%2C0%3BMQ%3D50%3BFQ%3D201%3BPV4%3D7.2e-06%2C0.1%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C255:99 scaffold934 SAMTools SNP 392391 392391 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C6.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C235:88 scaffold934 SAMTools SNP 392426 392426 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold934 SAMTools SNP 421919 421919 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold935 SAMTools SNP 1701 1701 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold935 SAMTools SNP 1703 1703 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold935 SAMTools SNP 52671 52671 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0125%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D47%3BFQ%3D28%3BPV4%3D0.47%2C6.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C191:58 scaffold935 SAMTools SNP 63735 63735 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C8%2C0%3BMQ%3D44%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C98:99 scaffold935 SAMTools SNP 64158 64158 91.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D35%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C18%2C0:33 scaffold935 SAMTools SNP 64212 64212 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C2%3BMQ%3D37%3BFQ%3D43%3BPV4%3D0.33%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C106:73 scaffold935 SAMTools SNP 64263 64263 97.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D33%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C21%2C0:39 scaffold935 SAMTools SNP 65896 65896 20.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0138%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold935 SAMTools SNP 66497 66497 42.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C18%2C0:33 scaffold935 SAMTools SNP 66611 66611 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C41%2C6%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C141%2C0:99 scaffold935 SAMTools SNP 66631 66631 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C6%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C144%2C0:99 scaffold939 SAMTools SNP 10808 10808 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold939 SAMTools SNP 10831 10831 144 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1.7e-13%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C238:99 scaffold939 SAMTools SNP 11354 11354 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C26%2C3%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 11488 11488 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold939 SAMTools SNP 12991 12991 15.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold939 SAMTools SNP 14456 14456 120 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C28%2C0%2C35%3BMQ%3D50%3BFQ%3D123%3BPV4%3D2.6e-05%2C1.5e-06%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold939 SAMTools SNP 14475 14475 143 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C39%2C0%2C25%3BMQ%3D50%3BFQ%3D146%3BPV4%3D0.0069%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold939 SAMTools SNP 16539 16539 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 17703 17703 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C13%2C9%3BMQ%3D50%3BFQ%3D138%3BPV4%3D0.067%2C0.49%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold939 SAMTools SNP 18158 18158 167 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C11%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.069%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold939 SAMTools SNP 18179 18179 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C6%2C14%2C0%3BMQ%3D50%3BFQ%3D191%3BPV4%3D0.065%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C255:99 scaffold939 SAMTools SNP 18535 18535 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C33%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold939 SAMTools SNP 18892 18892 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C59%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold939 SAMTools SNP 20809 20809 17.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold939 SAMTools SNP 51351 51351 45.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C18%2C0:33 scaffold939 SAMTools SNP 106871 106871 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C91:54 scaffold939 SAMTools SNP 118279 118279 33.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C15%2C0:27 scaffold939 SAMTools SNP 118353 118353 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold939 SAMTools SNP 122147 122147 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 122235 122235 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C10%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold939 SAMTools SNP 122399 122399 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 122420 122420 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold939 SAMTools SNP 122983 122983 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C10%2C2%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C133:99 scaffold939 SAMTools SNP 123013 123013 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0109%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold939 SAMTools SNP 125266 125266 71 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.54%2C0.0038%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold939 SAMTools SNP 125273 125273 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold939 SAMTools SNP 125286 125286 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold939 SAMTools SNP 145372 145372 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0131%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C4.9e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold939 SAMTools SNP 156721 156721 6.98 . . REF=N;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold939 SAMTools SNP 162128 162128 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C27%2C0:51 scaffold939 SAMTools SNP 167757 167757 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 171336 171336 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 174760 174760 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 174766 174766 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 174891 174891 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0101%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 174899 174899 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold939 SAMTools SNP 187323 187323 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C209:99 scaffold939 SAMTools SNP 187343 187343 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C252:99 scaffold939 SAMTools SNP 193349 193349 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C0%2C41%2C4%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.12%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold939 SAMTools SNP 193371 193371 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C32%2C60%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 194939 194939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C51%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold939 SAMTools SNP 194963 194963 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C45%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold939 SAMTools SNP 194975 194975 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold939 SAMTools SNP 194984 194984 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00078%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold939 SAMTools SNP 194990 194990 163 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C5%2C1%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.003%2C1%2C1%2C0.00075;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C198:99 scaffold939 SAMTools SNP 196608 196608 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D225%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C130%2C6%2C75%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.37%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 196632 196632 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C129%2C11%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 196730 196730 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold939 SAMTools SNP 196781 196781 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C8%2C8%2C4%3BMQ%3D42%3BFQ%3D225%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 196874 196874 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C26%2C32%2C19%3BMQ%3D21%3BFQ%3D95%3BPV4%3D0.7%2C0.027%2C0.063%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C190:99 scaffold939 SAMTools SNP 199721 199721 31 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C3%2C3%3BMQ%3D42%3BFQ%3D34%3BPV4%3D0.3%2C0.02%2C0.14%2C0.005;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C236:64 scaffold939 SAMTools SNP 200432 200432 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C44%2C7%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C0.079%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 200624 200624 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C92%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold939 SAMTools SNP 200814 200814 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C23%2C26%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.82%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold939 SAMTools SNP 202771 202771 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold939 SAMTools SNP 206451 206451 203 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C121:99 scaffold939 SAMTools SNP 206459 206459 86 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C250:99 scaffold939 SAMTools SNP 206488 206488 52 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold939 SAMTools SNP 206630 206630 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.49%2C0.36%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C254:99 scaffold939 SAMTools SNP 206668 206668 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C9%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.32%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C252:99 scaffold939 SAMTools SNP 208504 208504 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C165:36 scaffold939 SAMTools SNP 210254 210254 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 210296 210296 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C104:99 scaffold939 SAMTools SNP 210792 210792 172 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold939 SAMTools SNP 211059 211059 172 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold939 SAMTools SNP 211323 211323 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold939 SAMTools SNP 212038 212038 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold94 SAMTools SNP 43241 43241 3.52 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold94 SAMTools SNP 86157 86157 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold94 SAMTools SNP 105226 105226 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold94 SAMTools SNP 169666 169666 60.5 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C12%2C0:21 scaffold94 SAMTools SNP 186753 186753 10.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold94 SAMTools SNP 188083 188083 11.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold94 SAMTools SNP 226790 226790 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0215%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C231:33 scaffold94 SAMTools SNP 230631 230631 110 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold94 SAMTools SNP 232169 232169 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.003%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold94 SAMTools SNP 232177 232177 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold94 SAMTools SNP 232218 232218 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold94 SAMTools SNP 263980 263980 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold94 SAMTools SNP 264004 264004 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D254%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C59%2C74%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold94 SAMTools SNP 264064 264064 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D95%2C96%2C114%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.2e-10%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 264070 264070 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D340%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C33%2C91%2C57%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0024%2C0.17%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 264278 264278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D403%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C31%3BMQ%3D50%3BFQ%3D-184;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C157%2C0:99 scaffold94 SAMTools SNP 264876 264876 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C68%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold94 SAMTools SNP 265174 265174 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold94 SAMTools SNP 266884 266884 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.12%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold94 SAMTools SNP 268062 268062 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C21%2C0:39 scaffold94 SAMTools SNP 268211 268211 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold94 SAMTools SNP 268614 268614 7.59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold94 SAMTools SNP 268691 268691 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold94 SAMTools SNP 273553 273553 3.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0315%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold94 SAMTools SNP 273609 273609 55.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold94 SAMTools SNP 273702 273702 110 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold94 SAMTools SNP 274430 274430 172 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold94 SAMTools SNP 274505 274505 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold94 SAMTools SNP 274804 274804 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold94 SAMTools SNP 297750 297750 35.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold94 SAMTools SNP 297925 297925 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C190%2C14%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C3.3e-18%2C1%2C0.078;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 297955 297955 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D483%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C261%2C1%2C213%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.048%2C0.00011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 298448 298448 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D489%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C216%2C6%2C266%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.0091%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 298491 298491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C4%2C64%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold94 SAMTools SNP 298608 298608 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold94 SAMTools SNP 299186 299186 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D110%3BPV4%3D1%2C0.079%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C137:99 scaffold94 SAMTools SNP 299497 299497 186 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C28%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.013%2C6.1e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold94 SAMTools SNP 299621 299621 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C8%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold94 SAMTools SNP 308663 308663 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C24%2C15%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C1.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 308669 308669 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C7%2C4%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.31%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold94 SAMTools SNP 308702 308702 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C18%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 309100 309100 45 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C0%2C22%3BMQ%3D50%3BFQ%3D48%3BPV4%3D0.2%2C4.3e-21%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold94 SAMTools SNP 309152 309152 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C51%2C0:93 scaffold94 SAMTools SNP 309166 309166 34.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C12%2C0:21 scaffold94 SAMTools SNP 309268 309268 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C33%2C0:63 scaffold94 SAMTools SNP 309272 309272 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C12%2C0%3BMQ%3D50%3BFQ%3D111%3BPV4%3D1%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold94 SAMTools SNP 331142 331142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C63%3BMQ%3D50%3BFQ%3D-217;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C0:99 scaffold94 SAMTools SNP 334976 334976 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold94 SAMTools SNP 335197 335197 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C6%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold94 SAMTools SNP 335242 335242 196 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C13%2C27%2C1%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.059%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold94 SAMTools SNP 336691 336691 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C6%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold94 SAMTools SNP 336712 336712 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold94 SAMTools SNP 336784 336784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C21%2C58%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.8e-07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 337007 337007 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C54%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.27%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C225:99 scaffold94 SAMTools SNP 337623 337623 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C245:99 scaffold94 SAMTools SNP 337638 337638 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C22%2C0%3BMQ%3D50%3BFQ%3D195%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold94 SAMTools SNP 338421 338421 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C38%2C8%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.38%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 338763 338763 170 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C21%2C8%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00041%2C0.088%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold94 SAMTools SNP 338853 338853 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.077%2C1.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C243:61 scaffold94 SAMTools SNP 339218 339218 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold94 SAMTools SNP 339275 339275 54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.00011%2C0.13%2C1%2C4.8e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C236:87 scaffold94 SAMTools SNP 339329 339329 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C18%2C9%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold94 SAMTools SNP 340132 340132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 340489 340489 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C2%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.23%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 340536 340536 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.081%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold94 SAMTools SNP 345263 345263 80.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold94 SAMTools SNP 345314 345314 29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.048%2C5.7e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C132:62 scaffold94 SAMTools SNP 346070 346070 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold94 SAMTools SNP 346130 346130 77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.45%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C251:99 scaffold94 SAMTools SNP 346158 346158 119 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C238:99 scaffold94 SAMTools SNP 346523 346523 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold94 SAMTools SNP 346550 346550 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0119%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C205:79 scaffold94 SAMTools SNP 346556 346556 175 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.46%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C76:79 scaffold94 SAMTools SNP 347373 347373 92 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.17%2C0.12%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C193:99 scaffold94 SAMTools SNP 347385 347385 130 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C82:85 scaffold94 SAMTools SNP 347400 347400 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0306%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C185:99 scaffold94 SAMTools SNP 347955 347955 125 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C219:99 scaffold94 SAMTools SNP 348192 348192 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C184:99 scaffold94 SAMTools SNP 350630 350630 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold94 SAMTools SNP 351839 351839 98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C10%2C23%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.019%2C6.6e-24%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold94 SAMTools SNP 351865 351865 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C20%2C1%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.12%2C1.7e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold94 SAMTools SNP 352408 352408 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold94 SAMTools SNP 353037 353037 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C9%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold94 SAMTools SNP 354264 354264 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C47%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold94 SAMTools SNP 354273 354273 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C41%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold94 SAMTools SNP 354339 354339 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold94 SAMTools SNP 357344 357344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C6%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold94 SAMTools SNP 357359 357359 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C3%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C246%2C150:99 scaffold94 SAMTools SNP 357383 357383 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C5%2C6%2C1%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold94 SAMTools SNP 361035 361035 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C29%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold94 SAMTools SNP 368463 368463 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold94 SAMTools SNP 368909 368909 91 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.15%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C156:99 scaffold94 SAMTools SNP 368935 368935 183 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold94 SAMTools SNP 370664 370664 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold94 SAMTools SNP 373892 373892 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D96.9%3BPV4%3D1%2C0.47%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C124:99 scaffold94 SAMTools SNP 373906 373906 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C154:99 scaffold94 SAMTools SNP 375234 375234 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold94 SAMTools SNP 375237 375237 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold941 SAMTools SNP 470 470 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold941 SAMTools SNP 901 901 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold941 SAMTools SNP 1080 1080 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C11%2C0%3BMQ%3D49%3BFQ%3D178%3BPV4%3D0.42%2C0.087%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C205:99 scaffold941 SAMTools SNP 1178 1178 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D48%3BFQ%3D30%3BPV4%3D1%2C1%2C0.025%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C223:60 scaffold941 SAMTools SNP 1184 1184 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C3%3BMQ%3D48%3BFQ%3D35%3BPV4%3D1%2C0.4%2C0.041%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C211:65 scaffold941 SAMTools SNP 10957 10957 3.54 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D4.48%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C35:30 scaffold941 SAMTools SNP 20079 20079 33.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold941 SAMTools SNP 27599 27599 34 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D29.2%3BPV4%3D1%2C1.7e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C57:59 scaffold941 SAMTools SNP 27774 27774 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold941 SAMTools SNP 31340 31340 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold942 SAMTools SNP 1316 1316 151 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D42%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:184%2C21%2C0:39 scaffold942 SAMTools SNP 3726 3726 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold942 SAMTools SNP 3743 3743 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold942 SAMTools SNP 12773 12773 6.2 . . REF=N;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C3%2C0:4 scaffold942 SAMTools SNP 19136 19136 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C54%2C0:99 scaffold942 SAMTools SNP 23024 23024 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C114:33 scaffold942 SAMTools SNP 25651 25651 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 25666 25666 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.33%2C0.02%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C159:31 scaffold942 SAMTools SNP 26460 26460 16.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold942 SAMTools SNP 29467 29467 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold942 SAMTools SNP 29479 29479 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 34972 34972 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold942 SAMTools SNP 35174 35174 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold942 SAMTools SNP 35740 35740 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C38%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C129%2C0:99 scaffold942 SAMTools SNP 35843 35843 18 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold942 SAMTools SNP 36256 36256 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C19%3BMQ%3D50%3BFQ%3D89.5%3BPV4%3D1%2C1e-10%2C1%2C5.5e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C119:99 scaffold942 SAMTools SNP 36599 36599 42.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C12%2C0:21 scaffold942 SAMTools SNP 37615 37615 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C18%2C0:29 scaffold942 SAMTools SNP 38515 38515 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold942 SAMTools SNP 38518 38518 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C228:48 scaffold942 SAMTools SNP 38550 38550 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C247:99 scaffold942 SAMTools SNP 39564 39564 41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C11%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.3%2C1%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold942 SAMTools SNP 40805 40805 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C6%2C3%3BMQ%3D50%3BFQ%3D224%3BPV4%3D1%2C0.14%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold942 SAMTools SNP 40825 40825 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.0047%2C0.0035%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold942 SAMTools SNP 41727 41727 75 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C64%2C2%2C7%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.22%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold942 SAMTools SNP 41838 41838 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold942 SAMTools SNP 41877 41877 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 42196 42196 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C73%2C50%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.41%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 42408 42408 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C14%2C39%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C0.0005;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 42431 42431 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C71%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 43547 43547 191 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:224%2C36%2C0:69 scaffold942 SAMTools SNP 44768 44768 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold942 SAMTools SNP 44824 44824 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C57%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C0.44%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 48177 48177 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C59%2C2%2C9%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.65%2C0.39%2C1%2C0.025;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold942 SAMTools SNP 48202 48202 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C61%2C6%2C39%3BMQ%3D50%3BFQ%3D162%3BPV4%3D0.54%2C3.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C255:99 scaffold942 SAMTools SNP 48923 48923 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.072%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 48941 48941 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C52%2C9%3BMQ%3D50%3BFQ%3D-164%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C137%2C0:99 scaffold942 SAMTools SNP 49457 49457 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C14%2C64%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 49484 49484 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D141%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C48%2C31%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.5e-06%2C0.094%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 49498 49498 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C77%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 49872 49872 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D184%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C152%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 49898 49898 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C64%2C7%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 49942 49942 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 52480 52480 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold942 SAMTools SNP 52504 52504 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold942 SAMTools SNP 86611 86611 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C9%2C0:16 scaffold942 SAMTools SNP 101104 101104 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1.4e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C243:46 scaffold942 SAMTools SNP 106466 106466 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold942 SAMTools SNP 116927 116927 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0167%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold942 SAMTools SNP 120636 120636 196 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold942 SAMTools SNP 120696 120696 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold942 SAMTools SNP 126956 126956 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0037%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 128495 128495 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C2.9e-05%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C121:43 scaffold942 SAMTools SNP 129880 129880 39 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold942 SAMTools SNP 129896 129896 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold942 SAMTools SNP 133113 133113 50.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C21%2C0:39 scaffold942 SAMTools SNP 133227 133227 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 137187 137187 28 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.2%2C0.00063%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold942 SAMTools SNP 137706 137706 70 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:103%2C39%2C0:75 scaffold942 SAMTools SNP 139692 139692 9.08 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C12%2C0:16 scaffold942 SAMTools SNP 139754 139754 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C51%2C0:88 scaffold942 SAMTools SNP 139875 139875 158 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C23%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:191%2C72%2C0:99 scaffold942 SAMTools SNP 205330 205330 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold942 SAMTools SNP 206289 206289 13.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold942 SAMTools SNP 208071 208071 37 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C27%2C0:51 scaffold942 SAMTools SNP 208909 208909 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C15%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C5.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C227:99 scaffold942 SAMTools SNP 209612 209612 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C27%2C0:51 scaffold942 SAMTools SNP 217768 217768 24.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C18%2C0:32 scaffold942 SAMTools SNP 218060 218060 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.18%2C3.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C67:51 scaffold942 SAMTools SNP 218467 218467 34 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C0%2C7%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C0.00081%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C230:67 scaffold942 SAMTools SNP 218566 218566 203 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C42%2C0:81 scaffold942 SAMTools SNP 219112 219112 36.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C18%2C0:33 scaffold942 SAMTools SNP 223388 223388 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C0%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold942 SAMTools SNP 231197 231197 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C12%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.29%2C1.6e-17%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C161:55 scaffold942 SAMTools SNP 232616 232616 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold942 SAMTools SNP 248202 248202 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold942 SAMTools SNP 256831 256831 216 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C6%2C237%2C0%2C234:45 scaffold942 SAMTools SNP 257393 257393 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.46%2C0.017%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C183:57 scaffold942 SAMTools SNP 258009 258009 119 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C6%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.23%2C0.16%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold942 SAMTools SNP 258228 258228 132 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold942 SAMTools SNP 259992 259992 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 260304 260304 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold942 SAMTools SNP 260331 260331 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C227:88 scaffold942 SAMTools SNP 260682 260682 49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold942 SAMTools SNP 261555 261555 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 261558 261558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 261723 261723 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 261729 261729 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 262321 262321 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C1%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold942 SAMTools SNP 262336 262336 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C2%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold942 SAMTools SNP 262845 262845 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C14%2C0%3BMQ%3D48%3BFQ%3D197%3BPV4%3D1.3e-08%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C225:99 scaffold942 SAMTools SNP 262899 262899 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C19%3BMQ%3D47%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold942 SAMTools SNP 263322 263322 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold942 SAMTools SNP 263822 263822 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C14%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold942 SAMTools SNP 264234 264234 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.19%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold942 SAMTools SNP 264433 264433 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C88%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 266475 266475 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold942 SAMTools SNP 266480 266480 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.0033%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold942 SAMTools SNP 267471 267471 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.27%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold942 SAMTools SNP 267654 267654 54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C16%2C7%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.031%2C1e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold942 SAMTools SNP 267717 267717 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C17%2C25%2C2%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.047%2C9.2e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold942 SAMTools SNP 267942 267942 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C19%2C27%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.83%2C7.2e-67%2C1%2C0.058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 268377 268377 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.29%2C3.4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C228:30 scaffold942 SAMTools SNP 268735 268735 80 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C9%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C90%2C0:99 scaffold942 SAMTools SNP 268923 268923 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C3%2C46%2C9%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.23%2C2.3e-83%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold942 SAMTools SNP 272483 272483 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 274725 274725 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold942 SAMTools SNP 278694 278694 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.014%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold942 SAMTools SNP 285074 285074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold942 SAMTools SNP 285098 285098 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold942 SAMTools SNP 288357 288357 158 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.35%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold942 SAMTools SNP 288417 288417 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold942 SAMTools SNP 288447 288447 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold942 SAMTools SNP 289449 289449 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.057%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold942 SAMTools SNP 289516 289516 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 297506 297506 45.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold942 SAMTools SNP 302979 302979 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 304226 304226 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 304277 304277 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C1%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.078%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C255:99 scaffold942 SAMTools SNP 313003 313003 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 315437 315437 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C22%2C2%2C8%3BMQ%3D49%3BFQ%3D100%3BPV4%3D0.61%2C0.00041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold942 SAMTools SNP 315443 315443 92 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C4%3BMQ%3D49%3BFQ%3D95%3BPV4%3D0.47%2C1%2C1%2C0.0038;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold942 SAMTools SNP 318436 318436 86 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.52%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C221:99 scaffold942 SAMTools SNP 318529 318529 66 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C222:99 scaffold942 SAMTools SNP 319359 319359 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold942 SAMTools SNP 319411 319411 198 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C90:93 scaffold942 SAMTools SNP 319428 319428 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D57%3BPV4%3D1%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C223:87 scaffold942 SAMTools SNP 319458 319458 171 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold942 SAMTools SNP 321376 321376 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold942 SAMTools SNP 321469 321469 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.028%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C219:99 scaffold942 SAMTools SNP 321930 321930 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold942 SAMTools SNP 322124 322124 144 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C155:99 scaffold942 SAMTools SNP 322388 322388 81 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C43%2C1%3BMQ%3D50%3BFQ%3D-112%3BPV4%3D1%2C3.4e-11%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C85%2C0:99 scaffold942 SAMTools SNP 322688 322688 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C2%2C13%2C0%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.54%2C2.4e-39%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold942 SAMTools SNP 322814 322814 11.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold942 SAMTools SNP 322832 322832 83 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C27%2C0:51 scaffold942 SAMTools SNP 323312 323312 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C15%2C16%2C3%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.23%2C4.4e-15%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold942 SAMTools SNP 323760 323760 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C83%2C53%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 323810 323810 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C64%2C0%2C17%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.2%2C9.4e-09%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold942 SAMTools SNP 324149 324149 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 324898 324898 181 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C25%2C0%2C14%3BMQ%3D50%3BFQ%3D184%3BPV4%3D1%2C0.31%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C249:99 scaffold942 SAMTools SNP 325948 325948 25.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold942 SAMTools SNP 328153 328153 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C8%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold942 SAMTools SNP 329427 329427 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold942 SAMTools SNP 331143 331143 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C7%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 331162 331162 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C6%2C17%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C3.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold942 SAMTools SNP 336135 336135 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C5.8e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold942 SAMTools SNP 336289 336289 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C48%2C0:93 scaffold942 SAMTools SNP 337936 337936 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D347%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D85%2C34%2C46%2C68%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.9e-06%2C1%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 338092 338092 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D465%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:130%2C27%2C0:51 scaffold942 SAMTools SNP 338188 338188 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D335%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold942 SAMTools SNP 338242 338242 40 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D252%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C9%2C0:16 scaffold942 SAMTools SNP 338256 338256 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold942 SAMTools SNP 338344 338344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D405%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C255%2C144%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 339716 339716 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D301%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C188%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 340034 340034 129 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D473%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C39%2C0:75 scaffold942 SAMTools SNP 340063 340063 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C82%2C9%2C106%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C5.1e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 349440 349440 54.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C6%2C0:10 scaffold942 SAMTools SNP 355808 355808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 355828 355828 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C44%2C75%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 355874 355874 94 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C9%2C4%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.074%2C0.031%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold942 SAMTools SNP 355883 355883 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C16%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold942 SAMTools SNP 356393 356393 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 356822 356822 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D88.8%3BPV4%3D0.33%2C0.025%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C116:99 scaffold942 SAMTools SNP 356824 356824 175 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:208%2C27%2C0:51 scaffold942 SAMTools SNP 356827 356827 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold942 SAMTools SNP 357141 357141 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D120%2C9%2C61%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 357255 357255 32 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D329%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C150%2C3%2C58%3BMQ%3D50%3BFQ%3D35%3BPV4%3D7.3e-10%2C1.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold942 SAMTools SNP 357282 357282 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D286%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C175%2C102%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 357738 357738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D272%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C172%2C98%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.37%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 357780 357780 62 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C33%2C0%2C23%3BMQ%3D50%3BFQ%3D65%3BPV4%3D7.7e-10%2C8.2e-13%2C1%2C0.00045;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold942 SAMTools SNP 358358 358358 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C23%2C3%2C154%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C83:86 scaffold942 SAMTools SNP 358394 358394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C12%2C3%2C142%3BMQ%3D50%3BFQ%3D-142%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C115%2C0:99 scaffold942 SAMTools SNP 358418 358418 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.38%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C211:73 scaffold942 SAMTools SNP 358486 358486 84 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C39%2C0:75 scaffold942 SAMTools SNP 359117 359117 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C42%2C0:81 scaffold942 SAMTools SNP 359245 359245 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C96%2C0:99 scaffold942 SAMTools SNP 359345 359345 3.52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold942 SAMTools SNP 362214 362214 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold942 SAMTools SNP 362317 362317 68 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C33%2C0:63 scaffold942 SAMTools SNP 362492 362492 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 362550 362550 3.01 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.17%2C1.6e-05%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C161:28 scaffold942 SAMTools SNP 362564 362564 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold942 SAMTools SNP 363111 363111 128 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C0.18%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C180:99 scaffold942 SAMTools SNP 363116 363116 161 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.52%2C0.28%2C1%2C3.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C178:99 scaffold942 SAMTools SNP 363381 363381 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold942 SAMTools SNP 363390 363390 102 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold942 SAMTools SNP 363426 363426 124 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C134:99 scaffold942 SAMTools SNP 363707 363707 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold942 SAMTools SNP 363763 363763 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold942 SAMTools SNP 364011 364011 126 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C135:99 scaffold942 SAMTools SNP 364077 364077 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold942 SAMTools SNP 364346 364346 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold942 SAMTools SNP 364381 364381 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold942 SAMTools SNP 364399 364399 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold942 SAMTools SNP 364425 364425 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 364620 364620 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 365933 365933 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 366359 366359 147 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.2%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold942 SAMTools SNP 367900 367900 198 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C12%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.36%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C157:99 scaffold942 SAMTools SNP 369739 369739 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 369930 369930 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C14%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold942 SAMTools SNP 372375 372375 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C0%2C53%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 372810 372810 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C1%2C47%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.12%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 375638 375638 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C8%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold942 SAMTools SNP 375924 375924 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 379818 379818 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D792%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C353%2C28%2C335%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.032%2C0.0043%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 379844 379844 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D925%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C441%2C7%2C455%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 382162 382162 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C12%2C22%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 382261 382261 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C21%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 382289 382289 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C18%2C59%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 384513 384513 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D132%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold942 SAMTools SNP 384519 384519 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C59%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold942 SAMTools SNP 385176 385176 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D79%2C17%2C93%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.14%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 385186 385186 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C26%2C93%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 385203 385203 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C235%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 385672 385672 32 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C7%2C1%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.047%2C4.3e-05%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold942 SAMTools SNP 385687 385687 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C18%2C0:33 scaffold942 SAMTools SNP 385693 385693 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D0%2C3%2C23%2C11%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D0.047%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C9:12 scaffold942 SAMTools SNP 385726 385726 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C20%2C9%2C5%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.76%2C3.1e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold942 SAMTools SNP 386348 386348 95.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold942 SAMTools SNP 386733 386733 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold942 SAMTools SNP 387735 387735 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D75%2C77%2C25%2C49%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.032%2C3.7e-106%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold942 SAMTools SNP 388069 388069 78.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold942 SAMTools SNP 388370 388370 114 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C52%2C20%2C30%3BMQ%3D50%3BFQ%3D117%3BPV4%3D0.0043%2C9.3e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold942 SAMTools SNP 390105 390105 32.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold942 SAMTools SNP 390536 390536 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 390895 390895 54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D57%3BPV4%3D0.0027%2C1%2C1%2C0.00051;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold942 SAMTools SNP 392587 392587 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.66%2C0.014%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold942 SAMTools SNP 392908 392908 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C14%2C1%2C2%3BMQ%3D49%3BFQ%3D6.99%3BPV4%3D1%2C1%2C0.0032%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold942 SAMTools SNP 393709 393709 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C7.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold942 SAMTools SNP 393715 393715 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.035%2C1%2C1%2C2.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold942 SAMTools SNP 394713 394713 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 394996 394996 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold942 SAMTools SNP 395284 395284 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold942 SAMTools SNP 399636 399636 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 399642 399642 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 401013 401013 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold942 SAMTools SNP 402075 402075 54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C30%2C0:57 scaffold942 SAMTools SNP 404662 404662 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold942 SAMTools SNP 404899 404899 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 405433 405433 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0062%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 405588 405588 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold942 SAMTools SNP 420128 420128 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 420774 420774 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 420836 420836 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold942 SAMTools SNP 422853 422853 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 423261 423261 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold942 SAMTools SNP 431006 431006 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.5%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C202:99 scaffold942 SAMTools SNP 431051 431051 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.0054%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C221:55 scaffold942 SAMTools SNP 433971 433971 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold942 SAMTools SNP 434386 434386 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold942 SAMTools SNP 435129 435129 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold942 SAMTools SNP 435430 435430 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.502%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-6.96%3BPV4%3D0.14%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C21:24 scaffold942 SAMTools SNP 435978 435978 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C11%2C1%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.32%2C4.7e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold942 SAMTools SNP 438250 438250 31 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D0.4%2C0.00051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C35:38 scaffold942 SAMTools SNP 439965 439965 21.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold942 SAMTools SNP 440098 440098 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold942 SAMTools SNP 440976 440976 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 440997 440997 55.8 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold942 SAMTools SNP 441011 441011 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold942 SAMTools SNP 442269 442269 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.02%2C1%2C0.0081;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C254:46 scaffold942 SAMTools SNP 443918 443918 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 443958 443958 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C6%2C15%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.073%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold942 SAMTools SNP 444328 444328 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold942 SAMTools SNP 444390 444390 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C17%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.074%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold942 SAMTools SNP 444418 444418 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C23%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.16%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C237:99 scaffold942 SAMTools SNP 444580 444580 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold942 SAMTools SNP 445113 445113 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C4%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 445160 445160 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold942 SAMTools SNP 445182 445182 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.5%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold942 SAMTools SNP 445750 445750 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5016%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C8%3BMQ%3D46%3BFQ%3D-6.18%3BPV4%3D0.055%2C4.5e-09%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C22:25 scaffold942 SAMTools SNP 447667 447667 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold942 SAMTools SNP 447700 447700 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 447713 447713 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 447714 447714 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 448172 448172 77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold942 SAMTools SNP 451021 451021 25 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.28%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold942 SAMTools SNP 451450 451450 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C5%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold942 SAMTools SNP 452729 452729 46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C170%2C1%2C169%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C3.4e-226%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold942 SAMTools SNP 452772 452772 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D385%3BVDB%3D0.0018%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold942 SAMTools SNP 453071 453071 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C5%2C46%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0092%2C7.6e-40%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold942 SAMTools SNP 453343 453343 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C108%2C93%2C18%3BMQ%3D50%3BFQ%3D121%3BPV4%3D3.9e-18%2C7.1e-186%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C255:99 scaffold942 SAMTools SNP 453915 453915 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D456%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D94%2C132%2C110%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 455725 455725 25 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C9%2C0:15 scaffold942 SAMTools SNP 457604 457604 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C82%2C66%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 457610 457610 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D276%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C85%2C70%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 458540 458540 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 462795 462795 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D159%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C159%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold942 SAMTools SNP 463031 463031 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold942 SAMTools SNP 463052 463052 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C235:99 scaffold942 SAMTools SNP 464442 464442 220 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C26%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C227:99 scaffold942 SAMTools SNP 464519 464519 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.00038%2C0.13%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold942 SAMTools SNP 464532 464532 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold942 SAMTools SNP 464564 464564 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C35%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold942 SAMTools SNP 465350 465350 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold942 SAMTools SNP 465377 465377 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold942 SAMTools SNP 465856 465856 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C26%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold942 SAMTools SNP 466412 466412 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold942 SAMTools SNP 466421 466421 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C6%2C8%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.58%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C123:99 scaffold942 SAMTools SNP 466496 466496 16.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C8%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.13%2C4.4e-13%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C183:49 scaffold942 SAMTools SNP 466520 466520 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.44%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C193:99 scaffold942 SAMTools SNP 466969 466969 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C176:99 scaffold942 SAMTools SNP 466984 466984 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold942 SAMTools SNP 467055 467055 218 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold942 SAMTools SNP 467093 467093 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.051%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C225:50 scaffold942 SAMTools SNP 467221 467221 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.4%2C0%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C162:34 scaffold942 SAMTools SNP 467245 467245 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold942 SAMTools SNP 467250 467250 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 467440 467440 194 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:227%2C24%2C0:45 scaffold942 SAMTools SNP 467445 467445 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C71:43 scaffold942 SAMTools SNP 467448 467448 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold942 SAMTools SNP 467469 467469 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 467478 467478 119 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.52%2C0.46%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C219:99 scaffold942 SAMTools SNP 467943 467943 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C7%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold942 SAMTools SNP 467970 467970 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.25%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold942 SAMTools SNP 468052 468052 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold942 SAMTools SNP 468054 468054 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.24%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C186:99 scaffold942 SAMTools SNP 469201 469201 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold942 SAMTools SNP 469329 469329 6.02 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold942 SAMTools SNP 476461 476461 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 477728 477728 74 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.11%2C1%2C0.00094;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold942 SAMTools SNP 477762 477762 99 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold942 SAMTools SNP 479060 479060 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold942 SAMTools SNP 483765 483765 211 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold942 SAMTools SNP 483831 483831 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C231:66 scaffold942 SAMTools SNP 483877 483877 219 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.63%2C0.33%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold942 SAMTools SNP 483878 483878 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold942 SAMTools SNP 484681 484681 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C14%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.67%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C208:99 scaffold942 SAMTools SNP 484686 484686 110 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C2%2C3%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold942 SAMTools SNP 484832 484832 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0253%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C21%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.00014%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold942 SAMTools SNP 485016 485016 53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold942 SAMTools SNP 485082 485082 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D104%3BPV4%3D0.45%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold942 SAMTools SNP 487692 487692 85 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.00059%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold942 SAMTools SNP 487968 487968 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold942 SAMTools SNP 488313 488313 26 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold942 SAMTools SNP 489079 489079 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold942 SAMTools SNP 489121 489121 218 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold942 SAMTools SNP 489872 489872 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold942 SAMTools SNP 490280 490280 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D13.8%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C51:43 scaffold942 SAMTools SNP 490362 490362 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold942 SAMTools SNP 490394 490394 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 491059 491059 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold942 SAMTools SNP 491179 491179 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 493276 493276 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 493284 493284 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 493286 493286 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold942 SAMTools SNP 493597 493597 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C156:99 scaffold942 SAMTools SNP 493618 493618 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0.47%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C230:99 scaffold942 SAMTools SNP 493632 493632 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold942 SAMTools SNP 493762 493762 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold942 SAMTools SNP 494064 494064 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold942 SAMTools SNP 494106 494106 115 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C210:99 scaffold942 SAMTools SNP 494287 494287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C3%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold942 SAMTools SNP 496091 496091 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C62%3BMQ%3D50%3BFQ%3D-155;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C127:99 scaffold942 SAMTools SNP 496253 496253 124 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C58%2C0%2C17%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.57%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold942 SAMTools SNP 497848 497848 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C0%2C17%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold942 SAMTools SNP 498176 498176 35 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C3%2C0%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.049%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold942 SAMTools SNP 499540 499540 55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C3%2C8%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold942 SAMTools SNP 502137 502137 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold942 SAMTools SNP 502176 502176 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold942 SAMTools SNP 502593 502593 162 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold943 SAMTools SNP 6569 6569 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold943 SAMTools SNP 6797 6797 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold943 SAMTools SNP 6807 6807 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0030%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold943 SAMTools SNP 9376 9376 21 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00047%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C70:54 scaffold943 SAMTools SNP 65619 65619 14.7 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold943 SAMTools SNP 82730 82730 35.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-29%3BPV4%3D1%2C0.00082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C2%2C0:5 scaffold943 SAMTools SNP 83017 83017 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold943 SAMTools SNP 109091 109091 25 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D18%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C24%2C0:42 scaffold943 SAMTools SNP 109422 109422 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D11%2C6%2C2%2C0%3BMQ%3D26%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.0056;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C94:37 scaffold943 SAMTools SNP 109467 109467 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C6%2C3%3BMQ%3D32%3BFQ%3D86%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C183:99 scaffold943 SAMTools SNP 109922 109922 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold943 SAMTools SNP 117686 117686 86 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C3%2C0:6 scaffold943 SAMTools SNP 118587 118587 21.5 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold944 SAMTools SNP 13547 13547 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold944 SAMTools SNP 62984 62984 3.55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold944 SAMTools SNP 89766 89766 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C15%2C0:27 scaffold944 SAMTools SNP 89898 89898 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.27%2C2e-07%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C223:99 scaffold944 SAMTools SNP 90060 90060 90 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C69%2C0:99 scaffold944 SAMTools SNP 120864 120864 7.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold947 SAMTools SNP 17905 17905 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold947 SAMTools SNP 17969 17969 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold947 SAMTools SNP 17980 17980 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold947 SAMTools SNP 17982 17982 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold947 SAMTools SNP 18234 18234 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.077%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold947 SAMTools SNP 70845 70845 32.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C18%2C0:33 scaffold947 SAMTools SNP 74567 74567 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold947 SAMTools SNP 75171 75171 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold947 SAMTools SNP 78125 78125 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold947 SAMTools SNP 84103 84103 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold947 SAMTools SNP 84134 84134 37 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.033%2C0.00084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C221:70 scaffold947 SAMTools SNP 84893 84893 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold947 SAMTools SNP 84917 84917 163 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C206:99 scaffold947 SAMTools SNP 85813 85813 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold947 SAMTools SNP 85903 85903 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.073%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C205:43 scaffold947 SAMTools SNP 85957 85957 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold947 SAMTools SNP 86797 86797 177 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold947 SAMTools SNP 86834 86834 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 113966 113966 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 148783 148783 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C7%2C0%3BMQ%3D28%3BFQ%3D56%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C112:86 scaffold948 SAMTools SNP 149315 149315 84 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C4%2C2%3BMQ%3D37%3BFQ%3D87%3BPV4%3D0.62%2C0.088%2C1%2C0.00023;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C207:99 scaffold948 SAMTools SNP 149346 149346 50.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C12%2C0:21 scaffold948 SAMTools SNP 150343 150343 104 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C12%2C0%3BMQ%3D47%3BFQ%3D107%3BPV4%3D0.0011%2C4.7e-05%2C1%2C3.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold948 SAMTools SNP 150352 150352 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C0%3BMQ%3D46%3BFQ%3D29%3BPV4%3D0.1%2C0.01%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold948 SAMTools SNP 150360 150360 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C10%3BMQ%3D45%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold948 SAMTools SNP 150379 150379 168 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C12%3BMQ%3D46%3BFQ%3D171%3BPV4%3D1%2C0.013%2C0.38%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C230:99 scaffold948 SAMTools SNP 150942 150942 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D48%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold948 SAMTools SNP 161405 161405 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold948 SAMTools SNP 161954 161954 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold948 SAMTools SNP 170369 170369 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold948 SAMTools SNP 174108 174108 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 174156 174156 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 175351 175351 128 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1.1e-06%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold948 SAMTools SNP 176052 176052 7.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0447%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C6%3BMQ%3D37%3BFQ%3D5.86%3BPV4%3D1%2C3.3e-06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C33:35 scaffold948 SAMTools SNP 176244 176244 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0013%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D43%3BFQ%3D4.77%3BPV4%3D1%2C1.1e-23%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C112:28 scaffold948 SAMTools SNP 178091 178091 28.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold948 SAMTools SNP 181957 181957 100 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C18%2C0:33 scaffold948 SAMTools SNP 181984 181984 44.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C15%2C0:27 scaffold948 SAMTools SNP 183061 183061 62 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C160%2C241%2C0%2C223:63 scaffold948 SAMTools SNP 183828 183828 47 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold948 SAMTools SNP 183883 183883 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold948 SAMTools SNP 185053 185053 11.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold948 SAMTools SNP 185263 185263 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold948 SAMTools SNP 206444 206444 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold948 SAMTools SNP 206834 206834 13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold948 SAMTools SNP 207386 207386 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.072%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold948 SAMTools SNP 207412 207412 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C14%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold948 SAMTools SNP 207777 207777 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C2.8e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 207863 207863 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold948 SAMTools SNP 208451 208451 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C54%2C0%2C39%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold948 SAMTools SNP 208500 208500 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C58%2C0%2C28%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C0.0027%2C1%2C0.0029;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold948 SAMTools SNP 210256 210256 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold948 SAMTools SNP 210277 210277 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold948 SAMTools SNP 210307 210307 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold948 SAMTools SNP 210765 210765 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C37%2C11%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.0011%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold948 SAMTools SNP 211084 211084 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C90%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 216371 216371 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold948 SAMTools SNP 216429 216429 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 218486 218486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C39%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold948 SAMTools SNP 218720 218720 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold948 SAMTools SNP 219454 219454 104 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C15%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.031%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold948 SAMTools SNP 219818 219818 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C22%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold948 SAMTools SNP 219863 219863 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D188%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C58%2C7%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold948 SAMTools SNP 219968 219968 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D246%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C120%2C3%2C62%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.0056%2C0.0097%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold948 SAMTools SNP 220627 220627 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C192%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 220708 220708 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C15%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 221288 221288 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold948 SAMTools SNP 222219 222219 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C8%2C9%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 222315 222315 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C0%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold948 SAMTools SNP 222865 222865 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C45%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold948 SAMTools SNP 222898 222898 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C29%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold948 SAMTools SNP 222931 222931 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold948 SAMTools SNP 223377 223377 184 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.61%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold948 SAMTools SNP 223479 223479 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 223837 223837 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.0062%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C227:99 scaffold948 SAMTools SNP 224434 224434 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C20%3BMQ%3D50%3BFQ%3D-72%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold948 SAMTools SNP 224771 224771 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold948 SAMTools SNP 233498 233498 189 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:222%2C36%2C0:69 scaffold948 SAMTools SNP 233507 233507 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold948 SAMTools SNP 233585 233585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0025%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C41:44 scaffold948 SAMTools SNP 239896 239896 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold948 SAMTools SNP 239905 239905 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold948 SAMTools SNP 239962 239962 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C34%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold948 SAMTools SNP 240016 240016 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C28%2C5%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.02%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 240573 240573 124 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.61%2C0.15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold948 SAMTools SNP 240603 240603 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 240627 240627 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold948 SAMTools SNP 240669 240669 162 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold948 SAMTools SNP 241011 241011 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C4e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold948 SAMTools SNP 241035 241035 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 241074 241074 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C0%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold948 SAMTools SNP 241268 241268 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold948 SAMTools SNP 241344 241344 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold948 SAMTools SNP 241394 241394 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C15%2C10%3BMQ%3D50%3BFQ%3D-55%3BPV4%3D0.42%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C28%2C0:53 scaffold948 SAMTools SNP 241718 241718 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C19%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold948 SAMTools SNP 242608 242608 204 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C37%2C17%2C1%3BMQ%3D50%3BFQ%3D207%3BPV4%3D7.2e-09%2C0.24%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold948 SAMTools SNP 242620 242620 137 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C12%2C0%3BMQ%3D50%3BFQ%3D140%3BPV4%3D2.2e-09%2C0.0021%2C1%2C2.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold948 SAMTools SNP 242638 242638 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C45%2C3%2C15%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.021%2C3.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C247:85 scaffold948 SAMTools SNP 243186 243186 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold948 SAMTools SNP 243225 243225 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 243501 243501 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 243992 243992 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 244013 244013 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C23%3BMQ%3D50%3BFQ%3D-74%3BPV4%3D0.23%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C0:91 scaffold948 SAMTools SNP 244055 244055 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.17%2C0.0019%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C207:37 scaffold948 SAMTools SNP 244605 244605 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C25%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 244611 244611 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C7%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.00038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 244737 244737 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C5%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 244998 244998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C50%2C33%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold948 SAMTools SNP 245028 245028 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C21%2C32%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C5.2e-05%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 245151 245151 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C33%2C4%2C14%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.012%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold948 SAMTools SNP 245732 245732 9.52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.29%2C1%2C0.0093;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold948 SAMTools SNP 245785 245785 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold948 SAMTools SNP 246211 246211 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C4%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold948 SAMTools SNP 246265 246265 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold948 SAMTools SNP 246289 246289 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C15%2C5%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C56:59 scaffold948 SAMTools SNP 247479 247479 46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C6%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.31%2C0.0016%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold948 SAMTools SNP 247695 247695 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold948 SAMTools SNP 247698 247698 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold948 SAMTools SNP 248044 248044 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C5%2C0%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.044%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold948 SAMTools SNP 248086 248086 166 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C7%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:199%2C255%2C0:99 scaffold948 SAMTools SNP 248200 248200 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D273%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C152%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 248422 248422 23 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.19%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold948 SAMTools SNP 248425 248425 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C2%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold948 SAMTools SNP 248785 248785 129 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C2%2C15%3BMQ%3D50%3BFQ%3D132%3BPV4%3D4.7e-05%2C9.4e-08%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold948 SAMTools SNP 248902 248902 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C24%2C7%2C13%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.015%2C7.9e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold948 SAMTools SNP 248998 248998 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C4%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold948 SAMTools SNP 249417 249417 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C89%2C10%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 249483 249483 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C17%2C1%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.0029%2C0.19%2C1%2C1.7e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold948 SAMTools SNP 249594 249594 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C15%2C0:27 scaffold948 SAMTools SNP 249624 249624 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C14%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.05%2C0.00083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 250097 250097 207 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C13%2C6%2C3%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.046%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold948 SAMTools SNP 250220 250220 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C7%2C10%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C2.4e-13%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold948 SAMTools SNP 250232 250232 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C20%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold948 SAMTools SNP 250675 250675 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C18%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.0045%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold948 SAMTools SNP 250732 250732 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 251220 251220 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold948 SAMTools SNP 251259 251259 81 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C9%2C0:16 scaffold948 SAMTools SNP 251298 251298 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold948 SAMTools SNP 251370 251370 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold948 SAMTools SNP 251868 251868 208 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C27%2C0:51 scaffold948 SAMTools SNP 251916 251916 111 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D114%3BPV4%3D0.29%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:141%2C0%2C158:99 scaffold948 SAMTools SNP 252367 252367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C14%2C12%3BMQ%3D50%3BFQ%3D-66%3BPV4%3D0.48%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold948 SAMTools SNP 252511 252511 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C3%2C17%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.54%2C0.094%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C109:99 scaffold948 SAMTools SNP 252544 252544 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold948 SAMTools SNP 252847 252847 160 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C190:99 scaffold948 SAMTools SNP 253005 253005 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold948 SAMTools SNP 253287 253287 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C3%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold948 SAMTools SNP 253299 253299 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C11%2C2%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C181:99 scaffold948 SAMTools SNP 253497 253497 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C0%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold948 SAMTools SNP 254008 254008 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold948 SAMTools SNP 254009 254009 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold948 SAMTools SNP 254387 254387 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold948 SAMTools SNP 254393 254393 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 254435 254435 196 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D199%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold948 SAMTools SNP 255024 255024 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C1%2C49%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 255051 255051 149 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C25%2C21%2C2%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.033%2C0.0098%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold948 SAMTools SNP 255165 255165 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C33%2C21%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 255565 255565 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C17%2C33%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 255822 255822 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold948 SAMTools SNP 255894 255894 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C34%2C2%2C30%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.1%2C1.1e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold948 SAMTools SNP 255960 255960 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0006%3BAF1%3D0.5064%3BAC1%3D1%3BDP4%3D6%2C1%2C73%2C1%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C16:19 scaffold948 SAMTools SNP 255981 255981 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C3%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold948 SAMTools SNP 256573 256573 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 257007 257007 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold948 SAMTools SNP 257043 257043 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold948 SAMTools SNP 257082 257082 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.22%2C2.9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C232:99 scaffold948 SAMTools SNP 257112 257112 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C0.0023%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold948 SAMTools SNP 257244 257244 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C4%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C24%2C0:45 scaffold948 SAMTools SNP 257331 257331 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold948 SAMTools SNP 257368 257368 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold948 SAMTools SNP 257708 257708 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 257717 257717 87 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C30%2C0:57 scaffold948 SAMTools SNP 257747 257747 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C2%2C0%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.025%2C3.5e-05%2C1%2C0.0042;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold948 SAMTools SNP 257825 257825 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold948 SAMTools SNP 257831 257831 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C226:54 scaffold948 SAMTools SNP 258270 258270 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.35%2C6.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold948 SAMTools SNP 258757 258757 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C9%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 258787 258787 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C13%2C16%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C0.00042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 258874 258874 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C77%2C59%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0097%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 259197 259197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C97%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 260655 260655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold948 SAMTools SNP 260694 260694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold948 SAMTools SNP 262110 262110 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C24%2C1%2C12%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.04%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold948 SAMTools SNP 262293 262293 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C190:63 scaffold948 SAMTools SNP 262842 262842 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold948 SAMTools SNP 262857 262857 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.52%2C0.089%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold948 SAMTools SNP 262875 262875 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C2%2C21%2C3%3BMQ%3D50%3BFQ%3D56%3BPV4%3D0.36%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C255:86 scaffold948 SAMTools SNP 262965 262965 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C112%2C3%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 263019 263019 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D202%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C42%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold948 SAMTools SNP 263604 263604 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold948 SAMTools SNP 263628 263628 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 263655 263655 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold948 SAMTools SNP 263694 263694 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold948 SAMTools SNP 263998 263998 202 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:235%2C36%2C0:69 scaffold948 SAMTools SNP 264001 264001 15.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.036%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C177:48 scaffold948 SAMTools SNP 264442 264442 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D157%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold948 SAMTools SNP 264800 264800 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C63%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 265245 265245 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C23%2C21%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 265254 265254 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C63%2C41%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 265669 265669 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D178%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C124%2C39%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 265853 265853 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C8%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold948 SAMTools SNP 265870 265870 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold948 SAMTools SNP 265912 265912 202 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C21%2C2%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.6%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold948 SAMTools SNP 266514 266514 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold948 SAMTools SNP 266853 266853 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C26%2C22%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0016%2C0.0054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 266922 266922 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C11%2C10%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.017%2C8.5e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold948 SAMTools SNP 267287 267287 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold948 SAMTools SNP 267419 267419 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C2%2C16%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.4e-06%2C2.2e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 267503 267503 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:101%2C9%2C0:16 scaffold948 SAMTools SNP 267533 267533 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C28%2C7%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0034%2C0.0048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 267986 267986 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C9%2C11%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.34%2C4.2e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold948 SAMTools SNP 268251 268251 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C106%2C61%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 268305 268305 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D195%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D87%2C38%2C49%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 269103 269103 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D102%2C113%2C39%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 270372 270372 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C12%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold948 SAMTools SNP 270730 270730 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C10%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold948 SAMTools SNP 270800 270800 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C28%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold948 SAMTools SNP 270835 270835 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C43%2C26%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 271412 271412 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C21%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C0.0098;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold948 SAMTools SNP 271422 271422 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold948 SAMTools SNP 373897 373897 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1.4e-25%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C244:42 scaffold948 SAMTools SNP 374504 374504 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold948 SAMTools SNP 375124 375124 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C2%3BMQ%3D41%3BFQ%3D46%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C80:76 scaffold948 SAMTools SNP 375157 375157 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D45%3BFQ%3D47.9%3BPV4%3D1%2C0.16%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C79:78 scaffold948 SAMTools SNP 380378 380378 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0.087%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold948 SAMTools SNP 390545 390545 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold948 SAMTools SNP 392420 392420 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold948 SAMTools SNP 395626 395626 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold948 SAMTools SNP 395675 395675 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C160:74 scaffold948 SAMTools SNP 395682 395682 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold948 SAMTools SNP 397895 397895 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold948 SAMTools SNP 401388 401388 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C11%2C8%2C0%3BMQ%3D46%3BFQ%3D8.65%3BPV4%3D0.0097%2C5.2e-26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold948 SAMTools SNP 401493 401493 171 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C10%3BMQ%3D49%3BFQ%3D174%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C221:99 scaffold948 SAMTools SNP 401525 401525 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 405198 405198 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold948 SAMTools SNP 409516 409516 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C0%2C51%2C9%3BMQ%3D18%3BFQ%3D-108%3BPV4%3D0.58%2C0.17%2C0.46%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C81%2C0:99 scaffold948 SAMTools SNP 431522 431522 3.02 . . REF=G;ALT=T,A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C3%2C0%2C31%2C1%2C28:4 scaffold948 SAMTools SNP 431539 431539 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold948 SAMTools SNP 438428 438428 6.98 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold948 SAMTools SNP 438884 438884 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C0%2C3%3BMQ%3D49%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold948 SAMTools SNP 439033 439033 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C18%2C0:33 scaffold948 SAMTools SNP 443551 443551 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C5%2C0%3BMQ%3D38%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C99:99 scaffold948 SAMTools SNP 443554 443554 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C0%2C3%2C0%3BMQ%3D44%3BFQ%3D6.99%3BPV4%3D1%2C1%2C0.0092%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C169:33 scaffold948 SAMTools SNP 443785 443785 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C47%3BMQ%3D33%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold948 SAMTools SNP 443828 443828 7.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C0%2C6%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.024%2C0.15%2C1%2C0.00025;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold948 SAMTools SNP 443862 443862 21.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C21%2C0:36 scaffold948 SAMTools SNP 446979 446979 42.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0180%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C6%2C0:10 scaffold948 SAMTools SNP 447070 447070 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D0.33%2C0.33%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold948 SAMTools SNP 468894 468894 21.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold948 SAMTools SNP 479668 479668 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C8%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.0014%2C5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C225:40 scaffold948 SAMTools SNP 480004 480004 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold948 SAMTools SNP 480061 480061 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C4%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold948 SAMTools SNP 480181 480181 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D117%2C28%2C32%2C14%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.15%2C5.2e-87%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold948 SAMTools SNP 480411 480411 21.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C15%2C0:26 scaffold948 SAMTools SNP 481588 481588 20 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold948 SAMTools SNP 481930 481930 77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C96%2C0:99 scaffold948 SAMTools SNP 482035 482035 91 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D197%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D89%2C0%2C102%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C8.7e-120%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold948 SAMTools SNP 482212 482212 45 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C33%2C1%2C4%3BMQ%3D50%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold948 SAMTools SNP 485353 485353 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C6%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold948 SAMTools SNP 485354 485354 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold948 SAMTools SNP 485803 485803 38 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C27%2C0:51 scaffold948 SAMTools SNP 485905 485905 100 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C9%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C1.6e-18%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C36:39 scaffold948 SAMTools SNP 503009 503009 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold948 SAMTools SNP 505903 505903 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 505904 505904 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold948 SAMTools SNP 505905 505905 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold948 SAMTools SNP 508214 508214 3.55 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold948 SAMTools SNP 512345 512345 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 522001 522001 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold948 SAMTools SNP 527058 527058 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 527123 527123 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 531159 531159 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold948 SAMTools SNP 556869 556869 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 557718 557718 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0143%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold948 SAMTools SNP 557764 557764 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 560444 560444 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold948 SAMTools SNP 615951 615951 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C43%2C5%3BMQ%3D48%3BFQ%3D183%3BPV4%3D0.66%2C0.28%2C0.2%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold948 SAMTools SNP 615973 615973 53 . . REF=N;ALT=T,A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:123%2C47%2C38%2C82%2C0%2C79:16 scaffold948 SAMTools SNP 616788 616788 143 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C22%2C0%3BMQ%3D30%3BFQ%3D95%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C122:99 scaffold948 SAMTools SNP 619884 619884 31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D13%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C87%2C0:99 scaffold948 SAMTools SNP 620333 620333 23.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold948 SAMTools SNP 620959 620959 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C20%2C0%2C8%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C238:99 scaffold950 SAMTools SNP 21068 21068 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 48351 48351 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 65847 65847 7.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold950 SAMTools SNP 83800 83800 52.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0373%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C6%2C0:10 scaffold950 SAMTools SNP 90802 90802 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.4%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C110:71 scaffold950 SAMTools SNP 107376 107376 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold950 SAMTools SNP 108844 108844 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D0.33%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold950 SAMTools SNP 108861 108861 15.9 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold950 SAMTools SNP 114408 114408 12.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0114%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold950 SAMTools SNP 115017 115017 9.53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold950 SAMTools SNP 122466 122466 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C160:73 scaffold950 SAMTools SNP 122478 122478 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold950 SAMTools SNP 122562 122562 217 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C3%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C208:99 scaffold950 SAMTools SNP 122598 122598 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C6%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C210:99 scaffold950 SAMTools SNP 130258 130258 133 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C1%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.55%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C223:99 scaffold950 SAMTools SNP 139071 139071 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold950 SAMTools SNP 143228 143228 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.17%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C52:31 scaffold950 SAMTools SNP 143966 143966 128 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.25%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold950 SAMTools SNP 145347 145347 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C0%2C6%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C2.6e-05%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold950 SAMTools SNP 145546 145546 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0013%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold950 SAMTools SNP 148520 148520 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold950 SAMTools SNP 188812 188812 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold950 SAMTools SNP 188857 188857 3.01 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold950 SAMTools SNP 189425 189425 82 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C234:99 scaffold950 SAMTools SNP 189449 189449 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C250:42 scaffold950 SAMTools SNP 189532 189532 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold950 SAMTools SNP 190889 190889 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 197305 197305 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C18%2C6%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 220257 220257 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:246%2C18%2C0:33 scaffold950 SAMTools SNP 223814 223814 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C33%2C0:63 scaffold950 SAMTools SNP 223968 223968 45 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C33%2C0:63 scaffold950 SAMTools SNP 224403 224403 51 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C39%2C0:75 scaffold950 SAMTools SNP 224605 224605 21.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C24%2C0:40 scaffold950 SAMTools SNP 229562 229562 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 229613 229613 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1356%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C773%2C0%2C582%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 229638 229638 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1035%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C570%2C0%2C464%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 233120 233120 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold950 SAMTools SNP 239675 239675 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold950 SAMTools SNP 239703 239703 85 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D88%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C221:99 scaffold950 SAMTools SNP 239714 239714 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.45%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold950 SAMTools SNP 239720 239720 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0173%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.091%2C0.014%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold950 SAMTools SNP 239975 239975 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold950 SAMTools SNP 242211 242211 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold950 SAMTools SNP 249482 249482 6.02 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold950 SAMTools SNP 250858 250858 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold950 SAMTools SNP 251887 251887 65 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C1%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C33%2C0:63 scaffold950 SAMTools SNP 252749 252749 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.00028%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C38:41 scaffold950 SAMTools SNP 252836 252836 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.58%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C160:99 scaffold950 SAMTools SNP 252869 252869 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 255757 255757 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C6%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.61%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C241:99 scaffold950 SAMTools SNP 255802 255802 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold950 SAMTools SNP 258385 258385 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C5%2C8%3BMQ%3D50%3BFQ%3D-36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C9%2C0:16 scaffold950 SAMTools SNP 258420 258420 126 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold950 SAMTools SNP 258453 258453 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C182:99 scaffold950 SAMTools SNP 264996 264996 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.048%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C129:99 scaffold950 SAMTools SNP 268631 268631 39.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C6%2C0:10 scaffold950 SAMTools SNP 269283 269283 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold950 SAMTools SNP 280391 280391 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold950 SAMTools SNP 280603 280603 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold950 SAMTools SNP 284715 284715 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0041%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold950 SAMTools SNP 284723 284723 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.14%2C5.2e-09%2C1%2C1.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C184:43 scaffold950 SAMTools SNP 288771 288771 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold950 SAMTools SNP 288822 288822 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold950 SAMTools SNP 289013 289013 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold950 SAMTools SNP 289015 289015 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold950 SAMTools SNP 289253 289253 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 289260 289260 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold950 SAMTools SNP 291026 291026 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold950 SAMTools SNP 291053 291053 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold950 SAMTools SNP 295378 295378 89.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C5%2C0:9 scaffold950 SAMTools SNP 295480 295480 116 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D45%3BFQ%3D-35%3BPV4%3D1%2C0.14%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C8%2C0:14 scaffold950 SAMTools SNP 304176 304176 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C43%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold950 SAMTools SNP 317607 317607 9.49 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold950 SAMTools SNP 318446 318446 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C9%2C0:15 scaffold950 SAMTools SNP 318552 318552 95.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C12%2C0:21 scaffold950 SAMTools SNP 320694 320694 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C25%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold950 SAMTools SNP 322449 322449 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.092%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C244:69 scaffold950 SAMTools SNP 325907 325907 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold950 SAMTools SNP 327046 327046 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C14%2C22%2C23%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.056%2C0.0032%2C0.49%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 327206 327206 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C49%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.0096%2C1%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 328204 328204 210 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C27%2C0:51 scaffold950 SAMTools SNP 328213 328213 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C25%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold950 SAMTools SNP 332883 332883 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0115%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C44:36 scaffold950 SAMTools SNP 333993 333993 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C25%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C0.00016;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold950 SAMTools SNP 333996 333996 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold950 SAMTools SNP 334041 334041 110 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold950 SAMTools SNP 334391 334391 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold950 SAMTools SNP 334393 334393 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C8%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold950 SAMTools SNP 336403 336403 207 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C165:99 scaffold950 SAMTools SNP 338102 338102 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold950 SAMTools SNP 338111 338111 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C3%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold950 SAMTools SNP 339135 339135 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold950 SAMTools SNP 339141 339141 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold950 SAMTools SNP 341882 341882 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 341894 341894 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C6%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 342346 342346 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.45%2C0.015%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold950 SAMTools SNP 367806 367806 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C4%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold950 SAMTools SNP 380188 380188 94 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C0%2C10%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.0081%2C2.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold950 SAMTools SNP 380210 380210 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C18%2C3%2C40%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0038%2C0.022%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 384138 384138 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.0027%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold950 SAMTools SNP 389480 389480 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold950 SAMTools SNP 389566 389566 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold950 SAMTools SNP 393642 393642 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0343%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold950 SAMTools SNP 393675 393675 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold950 SAMTools SNP 408185 408185 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C37%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C248:99 scaffold950 SAMTools SNP 408528 408528 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold950 SAMTools SNP 414099 414099 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold950 SAMTools SNP 415824 415824 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C5%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 421731 421731 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C10%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold950 SAMTools SNP 423020 423020 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C7%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold950 SAMTools SNP 426520 426520 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C8%2C13%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.11%2C0.1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C249:99 scaffold950 SAMTools SNP 426681 426681 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.2%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C182:73 scaffold950 SAMTools SNP 426704 426704 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 426758 426758 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold950 SAMTools SNP 433764 433764 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C7%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold950 SAMTools SNP 434312 434312 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold950 SAMTools SNP 434329 434329 88.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold950 SAMTools SNP 449065 449065 32.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C21%2C0:39 scaffold950 SAMTools SNP 450114 450114 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 450376 450376 198 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C22%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:231%2C138%2C0:99 scaffold950 SAMTools SNP 453748 453748 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C6%2C23%2C0%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.18%2C0.35%2C1%2C0.0007;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold950 SAMTools SNP 453793 453793 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C39%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold950 SAMTools SNP 455567 455567 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 467050 467050 28 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.36%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C41:44 scaffold950 SAMTools SNP 467079 467079 99 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold950 SAMTools SNP 467109 467109 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C231:99 scaffold950 SAMTools SNP 467463 467463 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C193:99 scaffold950 SAMTools SNP 467515 467515 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold950 SAMTools SNP 467516 467516 76 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.1%2C0.22%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold950 SAMTools SNP 469235 469235 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold950 SAMTools SNP 494045 494045 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 498994 498994 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C9.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold950 SAMTools SNP 499019 499019 108 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C74:77 scaffold950 SAMTools SNP 519715 519715 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D29.7%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C68:60 scaffold950 SAMTools SNP 519819 519819 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.00069%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C110:99 scaffold950 SAMTools SNP 519826 519826 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold950 SAMTools SNP 528155 528155 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold950 SAMTools SNP 531031 531031 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C112:40 scaffold950 SAMTools SNP 578348 578348 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 578383 578383 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 588334 588334 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 591476 591476 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C5%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold950 SAMTools SNP 592017 592017 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D126%3BPV4%3D0.38%2C0.14%2C1%2C5.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold950 SAMTools SNP 592038 592038 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C3%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold950 SAMTools SNP 592989 592989 165 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C25%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:198%2C144%2C0:99 scaffold950 SAMTools SNP 593835 593835 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C6%2C7%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.0058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C232:99 scaffold950 SAMTools SNP 594987 594987 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C17%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold950 SAMTools SNP 595376 595376 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C4%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold950 SAMTools SNP 595430 595430 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C1%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.27%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold950 SAMTools SNP 595728 595728 209 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C5%3BMQ%3D50%3BFQ%3D142%3BPV4%3D0.46%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C169:99 scaffold950 SAMTools SNP 596047 596047 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold950 SAMTools SNP 597661 597661 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 598041 598041 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold950 SAMTools SNP 634672 634672 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 634769 634769 74 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C182:99 scaffold950 SAMTools SNP 635119 635119 68 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.12%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold950 SAMTools SNP 635120 635120 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C4%2C0%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.12%2C0.004%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold950 SAMTools SNP 635155 635155 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C15%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold950 SAMTools SNP 637178 637178 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold950 SAMTools SNP 638890 638890 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold950 SAMTools SNP 639768 639768 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D32%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C36%2C0:66 scaffold950 SAMTools SNP 644549 644549 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C11%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 644576 644576 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C15%2C5%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 644781 644781 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C12%2C8%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 644799 644799 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.055%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 644843 644843 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 645869 645869 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold950 SAMTools SNP 646069 646069 69 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C221:99 scaffold950 SAMTools SNP 646079 646079 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C147:99 scaffold950 SAMTools SNP 646290 646290 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold950 SAMTools SNP 646597 646597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D148%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C132%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold950 SAMTools SNP 648308 648308 4.77 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0335%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C8%2C7%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.068%2C7.2e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold950 SAMTools SNP 648461 648461 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C10%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 648880 648880 34 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C2%2C2%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.25%2C0.047%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold950 SAMTools SNP 648940 648940 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C9%2C0:16 scaffold950 SAMTools SNP 648961 648961 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D18%2C15%2C2%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.0031;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold950 SAMTools SNP 649015 649015 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C34%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold950 SAMTools SNP 650370 650370 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C28%3BMQ%3D50%3BFQ%3D-82%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C55%2C0:99 scaffold950 SAMTools SNP 650454 650454 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C8%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold950 SAMTools SNP 653893 653893 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C6%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.05%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold950 SAMTools SNP 658612 658612 5.44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold950 SAMTools SNP 659420 659420 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold950 SAMTools SNP 659521 659521 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold950 SAMTools SNP 659545 659545 125 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.00037%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold950 SAMTools SNP 659650 659650 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C51%2C0:99 scaffold950 SAMTools SNP 660407 660407 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 660421 660421 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 660720 660720 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold950 SAMTools SNP 664889 664889 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D977%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C943%2C0%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold950 SAMTools SNP 664909 664909 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1091%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1043%2C1%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold950 SAMTools SNP 664939 664939 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5135%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3320%2C11%2C1802%2C2%3BMQ%3D50%3BFQ%3D200%3BPV4%3D0.16%2C1%2C0.047%2C2e-72;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C255:99 scaffold950 SAMTools SNP 665480 665480 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 666651 666651 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D511%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C420%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold950 SAMTools SNP 667801 667801 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 671501 671501 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 671511 671511 50 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold950 SAMTools SNP 672419 672419 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C196:99 scaffold950 SAMTools SNP 672464 672464 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold950 SAMTools SNP 672467 672467 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.4%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold950 SAMTools SNP 672729 672729 107 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.26%2C0.00082%2C1%2C0.00067;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold950 SAMTools SNP 672747 672747 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C7%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.29%2C0.023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold950 SAMTools SNP 673683 673683 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold950 SAMTools SNP 675180 675180 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C19%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold950 SAMTools SNP 675246 675246 40 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold950 SAMTools SNP 679064 679064 27 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C3%3BMQ%3D39%3BFQ%3D30%3BPV4%3D0.23%2C0.001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C169:60 scaffold950 SAMTools SNP 680661 680661 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D142%3BPV4%3D6.9e-05%2C0.31%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C169:99 scaffold950 SAMTools SNP 681060 681060 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C9%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold950 SAMTools SNP 681490 681490 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.067%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C142:99 scaffold950 SAMTools SNP 681520 681520 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C9%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold950 SAMTools SNP 681541 681541 156 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D154%3BPV4%3D0.13%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C183:99 scaffold950 SAMTools SNP 681918 681918 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.15%2C0.39%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C235:99 scaffold950 SAMTools SNP 681933 681933 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold950 SAMTools SNP 681936 681936 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold950 SAMTools SNP 682442 682442 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C0.45%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold950 SAMTools SNP 682444 682444 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.028%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold950 SAMTools SNP 682461 682461 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold950 SAMTools SNP 683021 683021 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold950 SAMTools SNP 683237 683237 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 683255 683255 174 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold950 SAMTools SNP 684370 684370 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C8%2C16%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 684397 684397 75 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C2%2C2%3BMQ%3D49%3BFQ%3D78%3BPV4%3D0.17%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold950 SAMTools SNP 684755 684755 51 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C30%2C0:57 scaffold950 SAMTools SNP 684973 684973 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0242%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D8%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.6%2C2.5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C146:31 scaffold950 SAMTools SNP 685046 685046 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C16%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1.1e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold950 SAMTools SNP 685422 685422 18.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D310%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D169%2C2%2C133%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2e-235%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold950 SAMTools SNP 685780 685780 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C64%2C13%3BMQ%3D49%3BFQ%3D-212%3BPV4%3D1%2C0.054%2C0.44%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C185%2C0:99 scaffold950 SAMTools SNP 685889 685889 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D114%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C32%3BMQ%3D49%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold950 SAMTools SNP 686001 686001 38.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C18%2C0:33 scaffold950 SAMTools SNP 707916 707916 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:180%2C27%2C0:51 scaffold950 SAMTools SNP 708009 708009 170 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.00078%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C147:99 scaffold950 SAMTools SNP 708033 708033 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold950 SAMTools SNP 709698 709698 3.01 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold950 SAMTools SNP 744666 744666 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 761670 761670 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0126%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold950 SAMTools SNP 768235 768235 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0173%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C166:77 scaffold950 SAMTools SNP 769768 769768 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold950 SAMTools SNP 769809 769809 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold950 SAMTools SNP 770036 770036 24.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold950 SAMTools SNP 770395 770395 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold950 SAMTools SNP 770416 770416 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold950 SAMTools SNP 770461 770461 10.4 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold950 SAMTools SNP 789249 789249 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C9%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 789894 789894 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C99%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold950 SAMTools SNP 791103 791103 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C40%2C11%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 791438 791438 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C9%2C0:16 scaffold950 SAMTools SNP 792358 792358 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C16%2C11%2C11%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.43%2C5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold950 SAMTools SNP 792466 792466 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C40%3BMQ%3D50%3BFQ%3D-238;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C211%2C0:99 scaffold950 SAMTools SNP 792856 792856 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C28%2C74%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 792946 792946 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C50%2C56%2C63%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 793560 793560 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D263%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C106%2C34%2C82%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold950 SAMTools SNP 795665 795665 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold950 SAMTools SNP 799973 799973 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C93%2C0:99 scaffold951 SAMTools SNP 16564 16564 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.079;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold951 SAMTools SNP 16920 16920 21.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold951 SAMTools SNP 19645 19645 6.95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold951 SAMTools SNP 20561 20561 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold951 SAMTools SNP 23084 23084 19.6 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold951 SAMTools SNP 23255 23255 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C62%2C1%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C215:99 scaffold951 SAMTools SNP 27655 27655 69 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C69%2C8%2C34%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.42%2C8.7e-97%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold951 SAMTools SNP 27968 27968 27 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C9%2C0:16 scaffold951 SAMTools SNP 28447 28447 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C8%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.38%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C171:99 scaffold951 SAMTools SNP 28740 28740 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C65%2C5%3BMQ%3D49%3BFQ%3D204%3BPV4%3D0.67%2C1%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C231:99 scaffold951 SAMTools SNP 29334 29334 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C13%2C6%2C3%3BMQ%3D49%3BFQ%3D20.1%3BPV4%3D0.45%2C1.6e-26%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold951 SAMTools SNP 29946 29946 42 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:75%2C42%2C0:78 scaffold951 SAMTools SNP 31922 31922 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold951 SAMTools SNP 33132 33132 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C70%2C23%2C76%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 33154 33154 173 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D186%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C89%2C8%2C23%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold951 SAMTools SNP 33629 33629 9.52 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.4%2C0.0016%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C85:41 scaffold951 SAMTools SNP 42956 42956 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D6%2C7%2C4%2C2%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.63%2C3.2e-12%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold951 SAMTools SNP 43527 43527 104 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C42%2C0:81 scaffold951 SAMTools SNP 45261 45261 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold951 SAMTools SNP 46831 46831 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 47296 47296 153 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.59%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold951 SAMTools SNP 47837 47837 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C19%2C11%2C12%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.58%2C4.8e-08%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold951 SAMTools SNP 47910 47910 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold951 SAMTools SNP 48464 48464 98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0086%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.33%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C35:38 scaffold951 SAMTools SNP 48690 48690 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold951 SAMTools SNP 48766 48766 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C21%2C0%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.0068%2C1%2C1%2C0.00026;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C168:99 scaffold951 SAMTools SNP 48829 48829 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C212:99 scaffold951 SAMTools SNP 48844 48844 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C3%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold951 SAMTools SNP 49154 49154 149 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C155:99 scaffold951 SAMTools SNP 49198 49198 178 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:211%2C33%2C0:63 scaffold951 SAMTools SNP 49276 49276 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C99:99 scaffold951 SAMTools SNP 49291 49291 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold951 SAMTools SNP 49308 49308 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C7%2C2%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.007%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C164:99 scaffold951 SAMTools SNP 49575 49575 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.24%2C8.8e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C149:46 scaffold951 SAMTools SNP 49704 49704 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold951 SAMTools SNP 49737 49737 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold951 SAMTools SNP 49975 49975 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.47%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C212:99 scaffold951 SAMTools SNP 49989 49989 74 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.0027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold951 SAMTools SNP 50026 50026 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.071%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold951 SAMTools SNP 50094 50094 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.55%2C0.041%2C1%2C2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold951 SAMTools SNP 50116 50116 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold951 SAMTools SNP 50451 50451 96 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C13%2C1%2C3%3BMQ%3D50%3BFQ%3D99%3BPV4%3D0.41%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold951 SAMTools SNP 50467 50467 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold951 SAMTools SNP 50636 50636 216 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold951 SAMTools SNP 50787 50787 19.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C18%2C0:31 scaffold951 SAMTools SNP 51001 51001 193 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C13%3BMQ%3D50%3BFQ%3D196%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold951 SAMTools SNP 51861 51861 23.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C21%2C0:37 scaffold951 SAMTools SNP 52269 52269 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold951 SAMTools SNP 52842 52842 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold951 SAMTools SNP 52854 52854 125 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C6%2C0%3BMQ%3D50%3BFQ%3D128%3BPV4%3D0.018%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C255:99 scaffold951 SAMTools SNP 52899 52899 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.084%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 53815 53815 115 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold951 SAMTools SNP 54063 54063 195 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.33%2C0.0045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C227:99 scaffold951 SAMTools SNP 54101 54101 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 58384 58384 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C13%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 59166 59166 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C14%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 59241 59241 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C8%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.51%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 59551 59551 166 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.66%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold951 SAMTools SNP 59567 59567 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C9%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.062%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 59591 59591 124 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D127%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold951 SAMTools SNP 59615 59615 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold951 SAMTools SNP 59862 59862 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C9%2C0%2C3%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.51%2C2.3e-08%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold951 SAMTools SNP 59912 59912 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold951 SAMTools SNP 60112 60112 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C3%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C71:74 scaffold951 SAMTools SNP 60234 60234 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C5%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold951 SAMTools SNP 60312 60312 175 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C243:99 scaffold951 SAMTools SNP 60473 60473 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C4%2C9%2C2%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.62%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold951 SAMTools SNP 60525 60525 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C14%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.09%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 60712 60712 107 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C8%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold951 SAMTools SNP 61022 61022 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold951 SAMTools SNP 61482 61482 12.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.49%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold951 SAMTools SNP 61563 61563 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C0.13%2C1%2C0.0057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 62195 62195 157 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C9%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.049%2C0.00039%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C224:99 scaffold951 SAMTools SNP 62261 62261 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold951 SAMTools SNP 62513 62513 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold951 SAMTools SNP 62651 62651 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C3%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold951 SAMTools SNP 62655 62655 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C248:99 scaffold951 SAMTools SNP 63262 63262 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold951 SAMTools SNP 64575 64575 17.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold951 SAMTools SNP 64658 64658 203 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C24%2C0:45 scaffold951 SAMTools SNP 65849 65849 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 66031 66031 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold951 SAMTools SNP 66343 66343 35.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold951 SAMTools SNP 66479 66479 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold951 SAMTools SNP 66506 66506 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C7%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold951 SAMTools SNP 68011 68011 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold951 SAMTools SNP 68018 68018 111 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:143%2C12%2C0:21 scaffold951 SAMTools SNP 68260 68260 46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.43%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C154:79 scaffold951 SAMTools SNP 68300 68300 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold951 SAMTools SNP 68368 68368 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold951 SAMTools SNP 68848 68848 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold951 SAMTools SNP 68866 68866 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold951 SAMTools SNP 69004 69004 37.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C12%2C0:21 scaffold951 SAMTools SNP 69577 69577 64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C39%2C0:75 scaffold951 SAMTools SNP 69709 69709 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C9%2C0:14 scaffold951 SAMTools SNP 69925 69925 55.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C12%2C0:21 scaffold951 SAMTools SNP 70009 70009 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C12%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.021%2C9e-27%2C0.16%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 72640 72640 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C13%3BMQ%3D49%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold951 SAMTools SNP 75505 75505 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.017%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C161:37 scaffold951 SAMTools SNP 75653 75653 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.0084%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C129:28 scaffold951 SAMTools SNP 75665 75665 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D7.17%3BPV4%3D0.25%2C0.0014%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C38:35 scaffold951 SAMTools SNP 75715 75715 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D7.82%3BPV4%3D1%2C0%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C41:35 scaffold951 SAMTools SNP 76117 76117 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold951 SAMTools SNP 77774 77774 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C13%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold951 SAMTools SNP 79825 79825 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold951 SAMTools SNP 80127 80127 41 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C5%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.11%2C4.3e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold951 SAMTools SNP 80492 80492 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C2%2C38%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.28%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 80576 80576 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C79%3BMQ%3D50%3BFQ%3D-271;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C244%2C0:99 scaffold951 SAMTools SNP 80979 80979 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold951 SAMTools SNP 80999 80999 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold951 SAMTools SNP 81372 81372 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold951 SAMTools SNP 81450 81450 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C9%2C0:16 scaffold951 SAMTools SNP 81685 81685 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D185%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C238:99 scaffold951 SAMTools SNP 81742 81742 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C1%2C15%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.026%2C1.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold951 SAMTools SNP 82479 82479 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold951 SAMTools SNP 82875 82875 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold951 SAMTools SNP 82957 82957 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C39%2C0:75 scaffold951 SAMTools SNP 83000 83000 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold951 SAMTools SNP 83003 83003 190 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold951 SAMTools SNP 83615 83615 196 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C7%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.28%2C0.35%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C243:99 scaffold951 SAMTools SNP 83937 83937 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold951 SAMTools SNP 84793 84793 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C7%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold951 SAMTools SNP 86015 86015 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold951 SAMTools SNP 86033 86033 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold951 SAMTools SNP 86066 86066 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold951 SAMTools SNP 86126 86126 72 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C204:99 scaffold951 SAMTools SNP 92669 92669 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C79:82 scaffold951 SAMTools SNP 93008 93008 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D112%3BPV4%3D1%2C1%2C1%2C0.0051;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold951 SAMTools SNP 93051 93051 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C5%2C31%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 97175 97175 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C16%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold951 SAMTools SNP 101695 101695 30.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D19%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C21%2C0:39 scaffold951 SAMTools SNP 103011 103011 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold951 SAMTools SNP 137763 137763 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold951 SAMTools SNP 137857 137857 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold951 SAMTools SNP 139197 139197 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.45%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold951 SAMTools SNP 139323 139323 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold951 SAMTools SNP 139748 139748 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C32%3BMQ%3D50%3BFQ%3D-76%3BPV4%3D1%2C0.2%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=1/1:245%2C49%2C0:95 scaffold951 SAMTools SNP 147350 147350 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold951 SAMTools SNP 147366 147366 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C208:72 scaffold951 SAMTools SNP 147438 147438 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold951 SAMTools SNP 147595 147595 31.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold951 SAMTools SNP 147672 147672 9.31 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold951 SAMTools SNP 155044 155044 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold951 SAMTools SNP 155202 155202 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold951 SAMTools SNP 155935 155935 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C217:39 scaffold951 SAMTools SNP 161408 161408 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C18%2C11%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.00097%2C9.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold951 SAMTools SNP 161427 161427 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C1%2C13%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.072%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold951 SAMTools SNP 161430 161430 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C21%2C1%2C13%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.072%2C1%2C1%2C0.053;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold951 SAMTools SNP 162521 162521 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C9%2C24%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 165034 165034 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C8%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 165265 165265 203 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C16%2C0%2C19%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.0024%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold951 SAMTools SNP 167465 167465 132 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.5%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold951 SAMTools SNP 167962 167962 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C7.2e-07%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C77:42 scaffold951 SAMTools SNP 174566 174566 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.042%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold951 SAMTools SNP 176254 176254 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold951 SAMTools SNP 177488 177488 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold951 SAMTools SNP 177948 177948 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.034%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold951 SAMTools SNP 180044 180044 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold951 SAMTools SNP 183506 183506 109 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold951 SAMTools SNP 183532 183532 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold951 SAMTools SNP 183833 183833 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold951 SAMTools SNP 184067 184067 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold951 SAMTools SNP 184076 184076 50 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold951 SAMTools SNP 184103 184103 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold951 SAMTools SNP 190144 190144 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C4%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 190168 190168 156 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C57%2C2%2C11%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold951 SAMTools SNP 191274 191274 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C0%2C13%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.31%2C0.00042%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold951 SAMTools SNP 191692 191692 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D0.51%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold951 SAMTools SNP 191845 191845 40 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.24%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold951 SAMTools SNP 191923 191923 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D274%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D98%2C9%2C165%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0042%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 192165 192165 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C169%2C4%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C4.4e-155%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold951 SAMTools SNP 192429 192429 23 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.013%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold951 SAMTools SNP 192540 192540 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C18%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold954 SAMTools SNP 259 259 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold954 SAMTools SNP 3694 3694 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold954 SAMTools SNP 4396 4396 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1042%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C27%2C0:51 scaffold954 SAMTools SNP 4423 4423 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1313%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C360%2C28%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 5223 5223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D660%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C44%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold954 SAMTools SNP 6352 6352 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D446%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C251%2C193%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 6382 6382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D479%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C277%2C142%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 6940 6940 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1788%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1368%2C272%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 7057 7057 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1583%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C76%2C1468%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 10079 10079 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold954 SAMTools SNP 11004 11004 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C0%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold954 SAMTools SNP 11044 11044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold954 SAMTools SNP 11076 11076 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold954 SAMTools SNP 11465 11465 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C59%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold954 SAMTools SNP 11530 11530 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C40%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold954 SAMTools SNP 11551 11551 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C5%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold954 SAMTools SNP 12987 12987 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C6%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold954 SAMTools SNP 13519 13519 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold954 SAMTools SNP 17722 17722 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 18167 18167 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C56%2C6%3BMQ%3D50%3BFQ%3D-167%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C140%2C0:99 scaffold954 SAMTools SNP 18176 18176 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C6%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold954 SAMTools SNP 18423 18423 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1%2C1%2C1.6e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C229:44 scaffold954 SAMTools SNP 18451 18451 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold954 SAMTools SNP 18454 18454 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold954 SAMTools SNP 18950 18950 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold954 SAMTools SNP 18956 18956 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C3%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold954 SAMTools SNP 20169 20169 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold954 SAMTools SNP 20502 20502 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C25%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold954 SAMTools SNP 29035 29035 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C3%2C0:3 scaffold954 SAMTools SNP 35644 35644 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold954 SAMTools SNP 35674 35674 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C21%2C0:39 scaffold954 SAMTools SNP 35720 35720 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold954 SAMTools SNP 35767 35767 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C4%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold954 SAMTools SNP 36650 36650 23 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C0.081%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold954 SAMTools SNP 37181 37181 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold954 SAMTools SNP 39942 39942 209 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold954 SAMTools SNP 39979 39979 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold954 SAMTools SNP 47031 47031 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold954 SAMTools SNP 47201 47201 211 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold954 SAMTools SNP 47341 47341 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold954 SAMTools SNP 48566 48566 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold954 SAMTools SNP 48676 48676 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold954 SAMTools SNP 49025 49025 3.01 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C121:28 scaffold954 SAMTools SNP 49055 49055 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C69:43 scaffold954 SAMTools SNP 49068 49068 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.00098%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C130:28 scaffold954 SAMTools SNP 55570 55570 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 55581 55581 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 67029 67029 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 67040 67040 198 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C2.7e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C113:99 scaffold954 SAMTools SNP 69723 69723 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2099%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C958%2C264%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 72851 72851 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D232%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D127%2C7%2C80%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.047%2C7.7e-21%2C1%2C0.0027;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold954 SAMTools SNP 72858 72858 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C42%2C0:81 scaffold954 SAMTools SNP 72867 72867 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C83%3BMQ%3D50%3BFQ%3D-277;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C250%2C0:99 scaffold954 SAMTools SNP 72891 72891 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C259%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 73194 73194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C176%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 73248 73248 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold954 SAMTools SNP 73272 73272 179 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C0%2C32%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C3.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C241:99 scaffold954 SAMTools SNP 74425 74425 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D567%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C543%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 74512 74512 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D820%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C203%2C535%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 75299 75299 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D344%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C149%2C124%2C0%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1.3e-42%2C1.4e-75%2C1%2C1.2e-45;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold954 SAMTools SNP 75651 75651 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D243%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C203%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 76617 76617 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D998%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C347%2C648%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.56%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 76846 76846 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D410%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C169%2C157%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 76893 76893 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D532%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C54%2C242%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 77292 77292 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold954 SAMTools SNP 77293 77293 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold954 SAMTools SNP 77473 77473 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 77506 77506 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 77684 77684 56 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:86%2C0%2C35:38 scaffold954 SAMTools SNP 77720 77720 23.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold954 SAMTools SNP 78961 78961 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D769%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C0%2C168%2C527%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 79096 79096 38 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D327%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C220%2C0%2C99%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.56%2C4.3e-32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold954 SAMTools SNP 79102 79102 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D306%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C176%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold954 SAMTools SNP 85067 85067 162 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold954 SAMTools SNP 85085 85085 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold954 SAMTools SNP 85113 85113 82 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C3%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C20:23 scaffold954 SAMTools SNP 85127 85127 206 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C21%2C0:39 scaffold954 SAMTools SNP 85371 85371 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 85554 85554 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 85662 85662 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 87118 87118 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold954 SAMTools SNP 87755 87755 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold954 SAMTools SNP 103893 103893 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 104104 104104 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 106070 106070 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 106100 106100 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold954 SAMTools SNP 106697 106697 17.1 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C47%2C44%2C47%2C0%2C44:6 scaffold954 SAMTools SNP 106707 106707 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold954 SAMTools SNP 108631 108631 16.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C6%2C0:10 scaffold954 SAMTools SNP 108714 108714 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C62%3BMQ%3D50%3BFQ%3D-256;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C229%2C0:99 scaffold954 SAMTools SNP 108718 108718 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C66%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold954 SAMTools SNP 109756 109756 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold954 SAMTools SNP 109928 109928 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold954 SAMTools SNP 115601 115601 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold954 SAMTools SNP 115710 115710 3.55 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold954 SAMTools SNP 117174 117174 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold954 SAMTools SNP 117211 117211 101 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C12%2C0:21 scaffold954 SAMTools SNP 167237 167237 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold954 SAMTools SNP 174013 174013 6.79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold954 SAMTools SNP 174024 174024 45.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C6%2C0:10 scaffold955 SAMTools SNP 57 57 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 3353 3353 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 4181 4181 41 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C164:74 scaffold955 SAMTools SNP 4182 4182 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C70:43 scaffold955 SAMTools SNP 4217 4217 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold955 SAMTools SNP 4242 4242 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.33%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C190:69 scaffold955 SAMTools SNP 4268 4268 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold955 SAMTools SNP 4998 4998 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C7%2C3%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C225:99 scaffold955 SAMTools SNP 5033 5033 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold955 SAMTools SNP 5040 5040 30 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold955 SAMTools SNP 5042 5042 30 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.49%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold955 SAMTools SNP 5800 5800 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C155:36 scaffold955 SAMTools SNP 7060 7060 203 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C4%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C183:99 scaffold955 SAMTools SNP 7066 7066 160 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C3%2C2%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C183:99 scaffold955 SAMTools SNP 7159 7159 82 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C242:99 scaffold955 SAMTools SNP 7162 7162 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold955 SAMTools SNP 7640 7640 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C5%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 8195 8195 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C21%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 8218 8218 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C32%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold955 SAMTools SNP 11852 11852 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold955 SAMTools SNP 11870 11870 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold955 SAMTools SNP 11891 11891 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C15%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C0.05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 14944 14944 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0261%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold955 SAMTools SNP 14945 14945 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold955 SAMTools SNP 16723 16723 3.01 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0268%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.25%2C0.0037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold955 SAMTools SNP 18052 18052 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C8%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D5.7e-08%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 18067 18067 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C17%2C4%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold955 SAMTools SNP 18076 18076 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C25%2C3%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.45%2C3.1e-07%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold955 SAMTools SNP 24069 24069 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 24132 24132 215 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C231:99 scaffold955 SAMTools SNP 25815 25815 166 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C68%2C2%2C16%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold955 SAMTools SNP 26125 26125 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D210%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C194%2C11%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.42%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 26590 26590 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D206%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D7%2C6%2C4%2C186%3BMQ%3D50%3BFQ%3D-182%3BPV4%3D2e-07%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C155%2C0:99 scaffold955 SAMTools SNP 28039 28039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C30%3BMQ%3D48%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold955 SAMTools SNP 29455 29455 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C21%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold955 SAMTools SNP 29661 29661 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D205%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C94%2C110%3BMQ%3D49%3BFQ%3D-282%3BPV4%3D0.46%2C1%2C0.43%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 31059 31059 22 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.044%2C1.1e-06%2C1%2C0.0043;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold955 SAMTools SNP 31185 31185 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 32664 32664 21.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C12%2C0:21 scaffold955 SAMTools SNP 33048 33048 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D136%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C71%2C1%2C64%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 33190 33190 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold955 SAMTools SNP 34752 34752 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C32%2C5%2C49%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.73%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 34763 34763 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C8%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 38539 38539 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 41230 41230 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C0%2C58%3BMQ%3D50%3BFQ%3D-89%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:230%2C62%2C0:99 scaffold955 SAMTools SNP 41294 41294 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C25%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.0079%2C1%2C1%2C3e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C59:62 scaffold955 SAMTools SNP 41305 41305 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.24%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold955 SAMTools SNP 41628 41628 184 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C0%2C56%2C0%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1.3e-24%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold955 SAMTools SNP 43533 43533 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C33%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold955 SAMTools SNP 43999 43999 124 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C15%2C4%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.11%2C2.6e-10%2C1%2C0.048;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C255:99 scaffold955 SAMTools SNP 46239 46239 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 46509 46509 4.61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold955 SAMTools SNP 47469 47469 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C53%2C26%2C50%3BMQ%3D48%3BFQ%3D225%3BPV4%3D0.38%2C1%2C0.0006%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 48040 48040 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C7%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.36%2C1.3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C141:63 scaffold955 SAMTools SNP 51144 51144 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold955 SAMTools SNP 52644 52644 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C4.5e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C217:42 scaffold955 SAMTools SNP 53721 53721 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C0.4%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold955 SAMTools SNP 54068 54068 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C13%2C0%2C6%3BMQ%3D47%3BFQ%3D91%3BPV4%3D0.027%2C1%2C1%2C1.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold955 SAMTools SNP 57238 57238 4.11 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C9%2C0:8 scaffold955 SAMTools SNP 58710 58710 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold955 SAMTools SNP 59924 59924 36 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C138:69 scaffold955 SAMTools SNP 60132 60132 100 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold955 SAMTools SNP 61007 61007 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C127:88 scaffold955 SAMTools SNP 61028 61028 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold955 SAMTools SNP 61443 61443 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 61450 61450 117 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:149%2C12%2C0:21 scaffold955 SAMTools SNP 62495 62495 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0208%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D0.3%2C0.01%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C190:68 scaffold955 SAMTools SNP 62508 62508 162 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C7%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.24%2C0.36%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C135:99 scaffold955 SAMTools SNP 62552 62552 56 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C24%2C0:45 scaffold955 SAMTools SNP 62597 62597 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold955 SAMTools SNP 63132 63132 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C2%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold955 SAMTools SNP 63585 63585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C15%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 63638 63638 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C32%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C108%2C0:99 scaffold955 SAMTools SNP 63656 63656 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C2%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 66801 66801 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C92:95 scaffold955 SAMTools SNP 66815 66815 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C102:99 scaffold955 SAMTools SNP 67262 67262 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C252:96 scaffold955 SAMTools SNP 67266 67266 57 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D60%3BPV4%3D1%2C0.17%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C110:90 scaffold955 SAMTools SNP 67273 67273 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D147%3BPV4%3D1%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C177:99 scaffold955 SAMTools SNP 67636 67636 174 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.43%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C129:99 scaffold955 SAMTools SNP 67656 67656 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0202%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.29%2C0.19%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C154:30 scaffold955 SAMTools SNP 67669 67669 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold955 SAMTools SNP 68432 68432 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0006%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.2%2C5.1e-05%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C218:31 scaffold955 SAMTools SNP 68492 68492 59 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C1%2C2%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold955 SAMTools SNP 68918 68918 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold955 SAMTools SNP 68933 68933 128 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C82:85 scaffold955 SAMTools SNP 69326 69326 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold955 SAMTools SNP 69344 69344 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold955 SAMTools SNP 69398 69398 156 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C4%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C0.057%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C79:82 scaffold955 SAMTools SNP 69416 69416 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C1%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C196:99 scaffold955 SAMTools SNP 69861 69861 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C216:99 scaffold955 SAMTools SNP 71118 71118 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold955 SAMTools SNP 71916 71916 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold955 SAMTools SNP 72417 72417 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 72450 72450 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C91:40 scaffold955 SAMTools SNP 72561 72561 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0027%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold955 SAMTools SNP 73236 73236 20 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.093%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold955 SAMTools SNP 73304 73304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold955 SAMTools SNP 73315 73315 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold955 SAMTools SNP 73354 73354 200 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold955 SAMTools SNP 74521 74521 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold955 SAMTools SNP 74620 74620 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold955 SAMTools SNP 75341 75341 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C96:99 scaffold955 SAMTools SNP 75359 75359 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.46%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold955 SAMTools SNP 75544 75544 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C10%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.063%2C6.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C132:99 scaffold955 SAMTools SNP 76636 76636 111 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:144%2C36%2C0:69 scaffold955 SAMTools SNP 77265 77265 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C15%2C44%2C10%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.065%2C3.7e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C255:99 scaffold955 SAMTools SNP 77303 77303 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C11%2C49%2C11%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C3.3e-84%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:173%2C0%2C255:99 scaffold955 SAMTools SNP 77593 77593 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C20%2C0%2C21%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.054%2C4.2e-29%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold955 SAMTools SNP 79295 79295 22 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold955 SAMTools SNP 79297 79297 13.9 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold955 SAMTools SNP 79321 79321 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C59%2C0%2C8%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C1.8e-09%2C1%2C0.00012;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold955 SAMTools SNP 79447 79447 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C18%2C8%2C15%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.00019%2C4e-30%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold955 SAMTools SNP 79531 79531 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D387%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C290%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 79735 79735 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D396%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C370%2C22%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.0001%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 84181 84181 67.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C21%2C0:39 scaffold955 SAMTools SNP 84248 84248 27.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold955 SAMTools SNP 107398 107398 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.061%2C0.12%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold955 SAMTools SNP 107425 107425 173 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:206%2C24%2C0:45 scaffold955 SAMTools SNP 114837 114837 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0014%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C158:63 scaffold955 SAMTools SNP 116124 116124 95 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C14%2C7%2C10%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.12%2C2.2e-36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold955 SAMTools SNP 118171 118171 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold955 SAMTools SNP 124799 124799 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C16%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold955 SAMTools SNP 125453 125453 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C138:77 scaffold955 SAMTools SNP 125466 125466 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0071%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold955 SAMTools SNP 125809 125809 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C22%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 126024 126024 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C47%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold955 SAMTools SNP 126763 126763 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:236%2C36%2C0:69 scaffold955 SAMTools SNP 126969 126969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C12%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold955 SAMTools SNP 127008 127008 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold955 SAMTools SNP 127503 127503 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold955 SAMTools SNP 127542 127542 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold955 SAMTools SNP 127563 127563 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.37%2C0.14%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C158:99 scaffold955 SAMTools SNP 127593 127593 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold955 SAMTools SNP 128507 128507 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold955 SAMTools SNP 128884 128884 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold955 SAMTools SNP 129917 129917 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.14%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold955 SAMTools SNP 132502 132502 10.4 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold955 SAMTools SNP 132946 132946 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D249%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C227%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 133006 133006 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold955 SAMTools SNP 133041 133041 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C8%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.00057%2C1%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold955 SAMTools SNP 133351 133351 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 133426 133426 190 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold955 SAMTools SNP 133695 133695 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold955 SAMTools SNP 133701 133701 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold955 SAMTools SNP 134291 134291 132 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C3%2C3%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.14%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold955 SAMTools SNP 134345 134345 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C21%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold955 SAMTools SNP 134688 134688 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.52%2C0.25%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold955 SAMTools SNP 134975 134975 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:219%2C51%2C0:99 scaffold955 SAMTools SNP 135032 135032 222 . . REF=G;ALT=C,T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0%2C249%2C37%2C246:99 scaffold955 SAMTools SNP 135074 135074 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C29%2C0%3BMQ%3D47%3BFQ%3D216%3BPV4%3D0.029%2C1%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold955 SAMTools SNP 137116 137116 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C13%2C22%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 137146 137146 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C9%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 137164 137164 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 137394 137394 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C3%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 137699 137699 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold955 SAMTools SNP 137849 137849 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C24%2C1%3BMQ%3D50%3BFQ%3D223%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C251:99 scaffold955 SAMTools SNP 138435 138435 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C20%2C9%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C0.009;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 138498 138498 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D142%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C54%2C11%2C70%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.8%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 138656 138656 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C1%2C16%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold955 SAMTools SNP 138704 138704 38 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C0%2C10%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.061%2C4.3e-16%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold955 SAMTools SNP 138721 138721 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold955 SAMTools SNP 141324 141324 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold955 SAMTools SNP 143208 143208 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C41%2C0%2C34%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.037%2C0.27%2C1%2C0.05;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold955 SAMTools SNP 143258 143258 216 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C38%2C1%2C30%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C255:99 scaffold955 SAMTools SNP 143769 143769 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C158:99 scaffold955 SAMTools SNP 143778 143778 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.00049%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold955 SAMTools SNP 143827 143827 8.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C6%2C0:8 scaffold955 SAMTools SNP 143913 143913 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.005%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C118:99 scaffold955 SAMTools SNP 144404 144404 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C1%2C54%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.66%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold955 SAMTools SNP 144413 144413 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C10%2C22%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold955 SAMTools SNP 144478 144478 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C24%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold955 SAMTools SNP 144725 144725 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D176%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C26%2C63%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.39%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 144991 144991 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C9%2C20%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 145069 145069 69 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C60%2C13%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D4e-09%2C1%2C1%2C9.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold955 SAMTools SNP 145426 145426 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C11%2C12%2C2%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold955 SAMTools SNP 145526 145526 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C63%2C6%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.035%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 146894 146894 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C15%2C3%2C61%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 146924 146924 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.0096%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold955 SAMTools SNP 146937 146937 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D25%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.0071%2C0.47%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C255:36 scaffold955 SAMTools SNP 147200 147200 63 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C8%2C14%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.088%2C9.3e-08%2C1%2C0.0079;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold955 SAMTools SNP 147229 147229 108 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C3%2C1%2C5%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.00095%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold955 SAMTools SNP 147509 147509 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C7%2C15%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.014%2C1%2C0.0085;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 148304 148304 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C7%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold955 SAMTools SNP 148354 148354 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C17:20 scaffold955 SAMTools SNP 149302 149302 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C18%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold955 SAMTools SNP 149326 149326 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C17%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold955 SAMTools SNP 149399 149399 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C68%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold955 SAMTools SNP 150643 150643 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C64%3BMQ%3D50%3BFQ%3D-220;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C193%2C0:99 scaffold955 SAMTools SNP 152133 152133 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C44%2C9%3BMQ%3D50%3BFQ%3D129%3BPV4%3D0.3%2C7.4e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold955 SAMTools SNP 152170 152170 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C17%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.18%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold955 SAMTools SNP 152411 152411 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C57%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold955 SAMTools SNP 152717 152717 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C24%2C0%2C6%3BMQ%3D50%3BFQ%3D91%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C255:99 scaffold955 SAMTools SNP 153680 153680 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold955 SAMTools SNP 153701 153701 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold955 SAMTools SNP 154123 154123 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0354%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold955 SAMTools SNP 154872 154872 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 154914 154914 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 155053 155053 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 170636 170636 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold955 SAMTools SNP 173181 173181 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C8%2C11%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.17%2C1.5e-20%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold955 SAMTools SNP 173544 173544 37 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C1%2C8%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C2.5e-13%2C1%2C0.006;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C180:70 scaffold955 SAMTools SNP 176694 176694 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold955 SAMTools SNP 177149 177149 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C97%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 177186 177186 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C55%2C17%2C47%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 181726 181726 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D161%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C37%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.47%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 185856 185856 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold955 SAMTools SNP 185883 185883 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C1%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold955 SAMTools SNP 186100 186100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D380%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D173%2C2%2C199%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.029%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 186502 186502 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D548%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C198%2C102%2C168%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.023%2C3.1e-14%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 186533 186533 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C220%2C60%2C129%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.26%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 187200 187200 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D319%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C22%2C0%2C295%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 187598 187598 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C11%3BMQ%3D50%3BFQ%3D174%3BPV4%3D1%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C239:99 scaffold955 SAMTools SNP 187599 187599 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold955 SAMTools SNP 196240 196240 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold955 SAMTools SNP 198892 198892 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.039%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold955 SAMTools SNP 199504 199504 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D398%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D168%2C21%2C119%2C4%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.017%2C1%2C0.019%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 199860 199860 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D265%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C106%2C56%2C86%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1.1e-11%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 201026 201026 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C70%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold955 SAMTools SNP 201027 201027 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C70%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold955 SAMTools SNP 201234 201234 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C82%2C2%2C21%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C0.033%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold955 SAMTools SNP 201800 201800 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C22%2C2%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold955 SAMTools SNP 202278 202278 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C12%2C38%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0032%2C1%2C1%2C8.1e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 202332 202332 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C64%2C1%2C67%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 203887 203887 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C26%2C7%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold955 SAMTools SNP 203899 203899 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C15%2C9%2C5%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.33%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold955 SAMTools SNP 203929 203929 212 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C20%2C6%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold955 SAMTools SNP 204277 204277 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C44%2C2%2C10%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.12%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold955 SAMTools SNP 204286 204286 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C45%2C7%2C9%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C6.8e-12%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold955 SAMTools SNP 204307 204307 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C8%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.18%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 204382 204382 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C27%2C22%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0084%2C0.45%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 204909 204909 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold955 SAMTools SNP 205423 205423 104 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C31%2C11%2C22%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1.8e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold955 SAMTools SNP 205497 205497 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.18%2C0.0061%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold955 SAMTools SNP 205923 205923 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C14%2C6%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 205949 205949 28 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.0012%2C1%2C1%2C0.00052;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold955 SAMTools SNP 207213 207213 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D183%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D118%2C23%2C32%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold955 SAMTools SNP 207231 207231 208 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D180%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D113%2C30%2C30%2C7%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold955 SAMTools SNP 207273 207273 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D204%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D54%2C115%2C3%2C32%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.0037%2C0.26%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold955 SAMTools SNP 207285 207285 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D201%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C119%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold955 SAMTools SNP 208444 208444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C11%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold955 SAMTools SNP 238077 238077 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold955 SAMTools SNP 238140 238140 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C1%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold955 SAMTools SNP 238689 238689 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold955 SAMTools SNP 238701 238701 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C8%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold955 SAMTools SNP 241678 241678 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C52%2C0%2C40%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C0.048%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold955 SAMTools SNP 243592 243592 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 787 787 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold960 SAMTools SNP 863 863 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold960 SAMTools SNP 55934 55934 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C5%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold960 SAMTools SNP 57453 57453 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C62%2C20%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.46%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold960 SAMTools SNP 57468 57468 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C62%2C17%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold960 SAMTools SNP 58469 58469 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C25%2C2%2C6%3BMQ%3D50%3BFQ%3D154%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:181%2C0%2C255:99 scaffold960 SAMTools SNP 58490 58490 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C42%2C2%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.62%2C0.31%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold960 SAMTools SNP 58744 58744 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold960 SAMTools SNP 60214 60214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold960 SAMTools SNP 60242 60242 25 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0007%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.0001%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold960 SAMTools SNP 61171 61171 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D45%2C3%2C65%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C7.4e-21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold960 SAMTools SNP 61177 61177 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C10%2C46%2C3%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.37%2C2.8e-43%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C255:99 scaffold960 SAMTools SNP 67058 67058 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 67082 67082 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold960 SAMTools SNP 146318 146318 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 157031 157031 12.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold960 SAMTools SNP 159149 159149 19.6 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold960 SAMTools SNP 159578 159578 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.43%2C1.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C134:41 scaffold960 SAMTools SNP 160280 160280 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold960 SAMTools SNP 161232 161232 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 178023 178023 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 213668 213668 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C24%2C0:45 scaffold960 SAMTools SNP 214103 214103 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold960 SAMTools SNP 214569 214569 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold960 SAMTools SNP 214644 214644 190 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold960 SAMTools SNP 215304 215304 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C15%3BMQ%3D50%3BFQ%3D-193;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C166%2C0:99 scaffold960 SAMTools SNP 276148 276148 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold960 SAMTools SNP 309737 309737 48.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C21%2C0:39 scaffold960 SAMTools SNP 313345 313345 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 313347 313347 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0225%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold960 SAMTools SNP 314170 314170 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C45%2C0:87 scaffold962 SAMTools SNP 574 574 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 6327 6327 36.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C15%2C0:27 scaffold962 SAMTools SNP 6415 6415 126 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C18%2C0:33 scaffold962 SAMTools SNP 7330 7330 108 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C5%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C51%2C0:99 scaffold962 SAMTools SNP 20954 20954 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 21328 21328 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 129957 129957 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 129962 129962 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 129989 129989 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 130004 130004 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 130475 130475 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 153971 153971 6.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C0%2C3%2C0%3BMQ%3D35%3BFQ%3D8.65%3BPV4%3D1%2C0.044%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C108:36 scaffold962 SAMTools SNP 154019 154019 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D27%3BFQ%3D7.8%3BPV4%3D0.47%2C0.24%2C1%2C0.00017;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C34:37 scaffold962 SAMTools SNP 155432 155432 151 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D41%3BFQ%3D-34%3BPV4%3D0.012%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C7%2C0:12 scaffold962 SAMTools SNP 155738 155738 205 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C6%2C1%3BMQ%3D47%3BFQ%3D-42%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C15%2C0:27 scaffold962 SAMTools SNP 155848 155848 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold962 SAMTools SNP 157086 157086 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 217365 217365 6.79 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold962 SAMTools SNP 266521 266521 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 266538 266538 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold962 SAMTools SNP 267902 267902 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold962 SAMTools SNP 268873 268873 177 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold962 SAMTools SNP 272255 272255 5.46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold962 SAMTools SNP 323608 323608 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C4.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C129:52 scaffold962 SAMTools SNP 324327 324327 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 324384 324384 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 350175 350175 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C38%2C2%2C9%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D0.047%2C8.3e-32%2C1%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C237:50 scaffold962 SAMTools SNP 356170 356170 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold962 SAMTools SNP 356214 356214 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold962 SAMTools SNP 356233 356233 200 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold962 SAMTools SNP 363583 363583 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0241%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.00024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C124:47 scaffold962 SAMTools SNP 363671 363671 6.02 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold962 SAMTools SNP 363674 363674 4.61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold962 SAMTools SNP 363703 363703 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D6.48%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C41:33 scaffold962 SAMTools SNP 406166 406166 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold962 SAMTools SNP 407675 407675 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D8%2C1%2C5%2C0%3BMQ%3D27%3BFQ%3D4.77%3BPV4%3D1%2C1%2C0.31%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C113:28 scaffold962 SAMTools SNP 407676 407676 41.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5263%3BAC1%3D1%3BDP4%3D1%2C0%2C9%2C1%3BMQ%3D26%3BFQ%3D-17.1%3BPV4%3D1%2C1%2C0.052%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C10:13 scaffold962 SAMTools SNP 408324 408324 48 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C28%2C24%2C0%3BMQ%3D43%3BFQ%3D51%3BPV4%3D0.00015%2C6.4e-12%2C1%2C2e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold962 SAMTools SNP 408808 408808 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 408858 408858 46.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C18%2C0:33 scaffold962 SAMTools SNP 408954 408954 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C37:39 scaffold962 SAMTools SNP 408957 408957 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C38:41 scaffold962 SAMTools SNP 409020 409020 120 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D0.0013%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold962 SAMTools SNP 409642 409642 210 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold962 SAMTools SNP 409690 409690 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold962 SAMTools SNP 410313 410313 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 410355 410355 77.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C18%2C0:33 scaffold962 SAMTools SNP 410385 410385 93.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:126%2C15%2C0:27 scaffold962 SAMTools SNP 411171 411171 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 419491 419491 50 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D45%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C33%2C0:63 scaffold962 SAMTools SNP 419813 419813 3.52 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold962 SAMTools SNP 419944 419944 88 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C27%2C0:51 scaffold962 SAMTools SNP 420001 420001 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C7%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C1.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold962 SAMTools SNP 420841 420841 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold962 SAMTools SNP 420859 420859 12.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold962 SAMTools SNP 461118 461118 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 471146 471146 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 483192 483192 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 491740 491740 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold962 SAMTools SNP 510721 510721 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.00036;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold962 SAMTools SNP 511171 511171 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C82:40 scaffold962 SAMTools SNP 511198 511198 60 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold962 SAMTools SNP 531161 531161 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 532190 532190 109 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold962 SAMTools SNP 532199 532199 109 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0244%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold962 SAMTools SNP 542111 542111 6.02 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold962 SAMTools SNP 550051 550051 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold962 SAMTools SNP 550054 550054 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold962 SAMTools SNP 550291 550291 209 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold962 SAMTools SNP 550534 550534 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold962 SAMTools SNP 551302 551302 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 597188 597188 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold962 SAMTools SNP 604433 604433 49.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold962 SAMTools SNP 606423 606423 157 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C8%2C19%2C0%3BMQ%3D50%3BFQ%3D160%3BPV4%3D0.045%2C6.7e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C255:99 scaffold962 SAMTools SNP 607257 607257 86 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.0011%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold962 SAMTools SNP 607422 607422 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 607452 607452 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C116:40 scaffold962 SAMTools SNP 609406 609406 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C11%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold962 SAMTools SNP 609467 609467 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C8%2C10%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.065%2C9e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 609526 609526 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold962 SAMTools SNP 609929 609929 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold962 SAMTools SNP 613481 613481 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C4%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.39%2C1.9e-06%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold962 SAMTools SNP 613496 613496 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold962 SAMTools SNP 614023 614023 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.0078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C166:63 scaffold962 SAMTools SNP 614795 614795 88 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D91%3BPV4%3D0.011%2C0.013%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:118%2C0%2C209:99 scaffold962 SAMTools SNP 614867 614867 171 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0445%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold962 SAMTools SNP 618074 618074 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C9%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C57%2C0:99 scaffold962 SAMTools SNP 619182 619182 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 619227 619227 173 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D176%3BPV4%3D0.62%2C0.064%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:203%2C0%2C255:99 scaffold962 SAMTools SNP 619233 619233 108 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D111%3BPV4%3D0.24%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold962 SAMTools SNP 619276 619276 12.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C6%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C8.2e-10%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C223:44 scaffold962 SAMTools SNP 619749 619749 57 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C1%2C23%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.29%2C9.8e-27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold962 SAMTools SNP 620279 620279 43 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C30%2C0:57 scaffold962 SAMTools SNP 645630 645630 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C18%2C1%2C9%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C0.077%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold962 SAMTools SNP 645738 645738 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C216:69 scaffold962 SAMTools SNP 645969 645969 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold962 SAMTools SNP 646041 646041 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold962 SAMTools SNP 646712 646712 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.34%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold962 SAMTools SNP 646739 646739 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold962 SAMTools SNP 647137 647137 110 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C241:99 scaffold962 SAMTools SNP 647433 647433 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 647690 647690 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0042%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold962 SAMTools SNP 647906 647906 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 647929 647929 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 647978 647978 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 648151 648151 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold962 SAMTools SNP 648189 648189 63 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C211:96 scaffold962 SAMTools SNP 648243 648243 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C9%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C7.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C88:91 scaffold962 SAMTools SNP 648764 648764 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 648780 648780 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 649347 649347 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold962 SAMTools SNP 649671 649671 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold962 SAMTools SNP 649684 649684 89 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold962 SAMTools SNP 650448 650448 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 650886 650886 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 650909 650909 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.012%2C1%2C1%2C0.00034;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold962 SAMTools SNP 651525 651525 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 654353 654353 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 654366 654366 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 654825 654825 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 655259 655259 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold962 SAMTools SNP 655269 655269 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold962 SAMTools SNP 655613 655613 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold962 SAMTools SNP 655657 655657 95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C9%2C0:16 scaffold962 SAMTools SNP 656086 656086 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 656168 656168 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold962 SAMTools SNP 656388 656388 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C3%2C0%3BMQ%3D46%3BFQ%3D50%3BPV4%3D1%2C1%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C106:80 scaffold962 SAMTools SNP 656433 656433 60 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C9%2C0:16 scaffold962 SAMTools SNP 656490 656490 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C2%3BMQ%3D47%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C244:66 scaffold962 SAMTools SNP 656505 656505 100 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C5%2C3%3BMQ%3D48%3BFQ%3D96%3BPV4%3D0.081%2C0.0055%2C0.25%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C124:99 scaffold962 SAMTools SNP 656532 656532 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C2%2C0%3BMQ%3D48%3BFQ%3D27%3BPV4%3D0.19%2C1%2C1%2C1.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold962 SAMTools SNP 656547 656547 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C0%2C2%3BMQ%3D49%3BFQ%3D9.53%3BPV4%3D0.058%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold962 SAMTools SNP 656884 656884 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C31%2C8%3BMQ%3D50%3BFQ%3D-114%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold962 SAMTools SNP 656967 656967 212 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C17%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold962 SAMTools SNP 657139 657139 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 657150 657150 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold962 SAMTools SNP 657500 657500 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 657503 657503 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0253%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 657649 657649 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold962 SAMTools SNP 657668 657668 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold962 SAMTools SNP 658417 658417 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 658432 658432 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C35:38 scaffold962 SAMTools SNP 658489 658489 16.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold962 SAMTools SNP 661379 661379 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 661736 661736 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 662512 662512 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold962 SAMTools SNP 662514 662514 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold962 SAMTools SNP 663274 663274 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D8.64%3BPV4%3D1%2C9.9e-05%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C38:38 scaffold962 SAMTools SNP 663599 663599 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold962 SAMTools SNP 663625 663625 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.047%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold962 SAMTools SNP 663938 663938 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C15%2C0%3BMQ%3D50%3BFQ%3D62%3BPV4%3D0.17%2C1%2C1%2C0.085;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C89:92 scaffold962 SAMTools SNP 664231 664231 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C18%2C1%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.018%2C0.068%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C152:99 scaffold962 SAMTools SNP 664816 664816 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 664852 664852 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold962 SAMTools SNP 665542 665542 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold962 SAMTools SNP 665559 665559 115 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C11%2C0%2C13%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.48%2C0.0074%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold962 SAMTools SNP 665850 665850 38 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.46%2C1%2C1%2C0.08;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C213:71 scaffold962 SAMTools SNP 665918 665918 29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D31.2%3BPV4%3D1%2C0.29%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C66:61 scaffold962 SAMTools SNP 666367 666367 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold962 SAMTools SNP 666385 666385 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold962 SAMTools SNP 666637 666637 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold962 SAMTools SNP 666674 666674 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0143%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C198:74 scaffold962 SAMTools SNP 666858 666858 178 . . REF=C;ALT=A,T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C47%2C32%2C204%2C0%2C201:27 scaffold962 SAMTools SNP 668280 668280 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C6%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold962 SAMTools SNP 668480 668480 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 668523 668523 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.13%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold962 SAMTools SNP 668535 668535 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.42%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold962 SAMTools SNP 669480 669480 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold962 SAMTools SNP 669616 669616 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold962 SAMTools SNP 670040 670040 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C4%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.29%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C236:99 scaffold962 SAMTools SNP 670950 670950 168 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.16%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C209:99 scaffold962 SAMTools SNP 670980 670980 186 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C238:99 scaffold962 SAMTools SNP 671319 671319 127 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C4%2C11%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.039%2C7.8e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C234:99 scaffold962 SAMTools SNP 671361 671361 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C10%2C30%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00019%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 671635 671635 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C6%2C16%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C0.044%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 671680 671680 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C33%2C11%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 672571 672571 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 672582 672582 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 672967 672967 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 672983 672983 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D43.5%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C71:73 scaffold962 SAMTools SNP 673014 673014 212 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.49%2C0.14%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C62:65 scaffold962 SAMTools SNP 673384 673384 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C145:36 scaffold962 SAMTools SNP 674295 674295 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D169%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C196:99 scaffold962 SAMTools SNP 674391 674391 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.026%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C214:39 scaffold962 SAMTools SNP 674750 674750 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.32%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C166:85 scaffold962 SAMTools SNP 701988 701988 78 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.099%2C1%2C1%2C0.0011;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold962 SAMTools SNP 703963 703963 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C5.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C119:33 scaffold962 SAMTools SNP 704962 704962 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C21%2C7%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 706138 706138 43 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C22%2C0%2C6%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.15%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold962 SAMTools SNP 706146 706146 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C22%2C0%2C5%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.29%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold962 SAMTools SNP 706200 706200 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C11%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold962 SAMTools SNP 706473 706473 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D87%3BPV4%3D1%2C0.19%2C1%2C0.045;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold962 SAMTools SNP 706630 706630 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C6%2C5%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.18%2C0.12%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C221:99 scaffold962 SAMTools SNP 706633 706633 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C6%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold962 SAMTools SNP 710877 710877 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 710895 710895 121 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold962 SAMTools SNP 712157 712157 77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C0.0003;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C130:99 scaffold962 SAMTools SNP 712166 712166 83 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0106%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.14%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C154:99 scaffold962 SAMTools SNP 712295 712295 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold962 SAMTools SNP 712588 712588 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C41:44 scaffold962 SAMTools SNP 712593 712593 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 713063 713063 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 714328 714328 208 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:241%2C24%2C0:45 scaffold962 SAMTools SNP 714363 714363 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold962 SAMTools SNP 714367 714367 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C17%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C0.39%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 714418 714418 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C3%2C19%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 716066 716066 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.12%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C202:63 scaffold962 SAMTools SNP 716084 716084 147 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C242:99 scaffold962 SAMTools SNP 716432 716432 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold962 SAMTools SNP 716792 716792 213 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C4%3BMQ%3D50%3BFQ%3D202%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C229:99 scaffold962 SAMTools SNP 716822 716822 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.081%2C1%2C1%2C0.002;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold962 SAMTools SNP 716838 716838 194 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C3%2C6%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.62%2C0.26%2C1%2C0.0063;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold962 SAMTools SNP 716885 716885 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C5%2C12%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 717067 717067 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C9%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold962 SAMTools SNP 717097 717097 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold962 SAMTools SNP 717985 717985 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C58%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold962 SAMTools SNP 718414 718414 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 773722 773722 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C9%2C0:16 scaffold962 SAMTools SNP 774057 774057 35.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold962 SAMTools SNP 774602 774602 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold962 SAMTools SNP 784523 784523 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.084%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold962 SAMTools SNP 838384 838384 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 842573 842573 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 867525 867525 12.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold962 SAMTools SNP 869574 869574 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold962 SAMTools SNP 926725 926725 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold962 SAMTools SNP 944882 944882 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C12%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold962 SAMTools SNP 944906 944906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C9%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold962 SAMTools SNP 944977 944977 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C17%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold962 SAMTools SNP 945002 945002 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C17%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold962 SAMTools SNP 945860 945860 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C16%2C17%2C31%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 946210 946210 134 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C36%2C19%2C1%3BMQ%3D50%3BFQ%3D137%3BPV4%3D3e-06%2C1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold962 SAMTools SNP 946240 946240 187 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C4%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.52%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold962 SAMTools SNP 946538 946538 90 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.1%2C1%2C1%2C0.086;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold962 SAMTools SNP 946581 946581 17.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.055%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold962 SAMTools SNP 946787 946787 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C255:80 scaffold962 SAMTools SNP 951949 951949 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D48%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold962 SAMTools SNP 952026 952026 3.54 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.061%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold962 SAMTools SNP 952393 952393 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C2%3BMQ%3D46%3BFQ%3D77%3BPV4%3D0.49%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C123:99 scaffold962 SAMTools SNP 952423 952423 19.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0124%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C1%3BMQ%3D45%3BFQ%3D22%3BPV4%3D0.4%2C0.00016%2C0.25%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C77:52 scaffold962 SAMTools SNP 952432 952432 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D41%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C9%2C0:16 scaffold962 SAMTools SNP 952522 952522 19.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C12%2C0:21 scaffold962 SAMTools SNP 952672 952672 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C3%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C108%2C0:99 scaffold962 SAMTools SNP 953767 953767 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D67%2C28%2C44%2C16%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.86%2C2.4e-89%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold962 SAMTools SNP 954431 954431 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold962 SAMTools SNP 955473 955473 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 955960 955960 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 960213 960213 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C40%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold962 SAMTools SNP 960586 960586 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 960709 960709 119 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C17%2C3%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.23%2C1.7e-19%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C239:99 scaffold962 SAMTools SNP 961114 961114 84 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:117%2C45%2C0:87 scaffold962 SAMTools SNP 961552 961552 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C15%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C3.6e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold962 SAMTools SNP 962722 962722 207 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C15%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C0.076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C193:99 scaffold962 SAMTools SNP 966047 966047 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C13%2C5%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.031%2C4.1e-39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold962 SAMTools SNP 966216 966216 123 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C12%2C1%2C12%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1e-05%2C0.18%2C1%2C9.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold962 SAMTools SNP 966224 966224 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C27%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C9e-11%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 968156 968156 158 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C4%2C2%3BMQ%3D50%3BFQ%3D161%3BPV4%3D0.64%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C255:99 scaffold962 SAMTools SNP 968171 968171 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.24%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold962 SAMTools SNP 968802 968802 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C202:66 scaffold962 SAMTools SNP 969681 969681 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold962 SAMTools SNP 969740 969740 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C26%3BMQ%3D50%3BFQ%3D-181;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C154%2C0:99 scaffold962 SAMTools SNP 969986 969986 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C21%2C4%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 970061 970061 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C16%2C45%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 970644 970644 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D94%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C35%2C4%2C50%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C0.15%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 971007 971007 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C69%2C4%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 971031 971031 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C67%2C4%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 971061 971061 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C27%2C2%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 984079 984079 91 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C3%2C8%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C2.2e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold962 SAMTools SNP 984603 984603 10.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold962 SAMTools SNP 998629 998629 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.56%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C248:99 scaffold962 SAMTools SNP 999550 999550 208 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C4%3BMQ%3D50%3BFQ%3D211%3BPV4%3D0.59%2C0.027%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold962 SAMTools SNP 1000043 1000043 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold962 SAMTools SNP 1000094 1000094 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold962 SAMTools SNP 1000769 1000769 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C243:96 scaffold962 SAMTools SNP 1000771 1000771 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C11%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold962 SAMTools SNP 1000990 1000990 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold962 SAMTools SNP 1002487 1002487 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.47%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold962 SAMTools SNP 1002996 1002996 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C6%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1003141 1003141 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C12%3BMQ%3D50%3BFQ%3D182%3BPV4%3D0.13%2C0.015%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold962 SAMTools SNP 1003476 1003476 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C6%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 1004463 1004463 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.00011%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C168:54 scaffold962 SAMTools SNP 1004844 1004844 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C0.068%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C160:99 scaffold962 SAMTools SNP 1005435 1005435 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C4%2C34%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1005863 1005863 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C29%2C5%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.091%2C0.037%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold962 SAMTools SNP 1005881 1005881 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C30%2C7%2C1%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.018%2C1%2C1%2C4.8e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold962 SAMTools SNP 1006263 1006263 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C3%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1006270 1006270 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C3%2C22%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1006277 1006277 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C5%2C21%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1007859 1007859 204 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C9%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold962 SAMTools SNP 1008154 1008154 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold962 SAMTools SNP 1009369 1009369 18 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold962 SAMTools SNP 1010529 1010529 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C21%2C7%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C0.0086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1011622 1011622 198 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C12%2C0%3BMQ%3D50%3BFQ%3D178%3BPV4%3D0.00026%2C1%2C1%2C6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:228%2C0%2C205:99 scaffold962 SAMTools SNP 1011716 1011716 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold962 SAMTools SNP 1011734 1011734 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C82:85 scaffold962 SAMTools SNP 1012570 1012570 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C7%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1013193 1013193 71 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D1%2C1%2C1%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold962 SAMTools SNP 1013229 1013229 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C19%2C3%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.019%2C1%2C1%2C0.00053;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold962 SAMTools SNP 1013440 1013440 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1013593 1013593 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C0.078%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold962 SAMTools SNP 1013750 1013750 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C8%2C3%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D1%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold962 SAMTools SNP 1013784 1013784 130 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C4%2C2%3BMQ%3D50%3BFQ%3D133%3BPV4%3D0.62%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold962 SAMTools SNP 1013808 1013808 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C15%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold962 SAMTools SNP 1014726 1014726 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.00015%2C1%2C0.0083;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold962 SAMTools SNP 1014813 1014813 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold962 SAMTools SNP 1014925 1014925 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1014931 1014931 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C190:31 scaffold962 SAMTools SNP 1015114 1015114 38 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C27%2C5%2C1%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.00013%2C1.9e-19%2C1%2C0.0034;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold962 SAMTools SNP 1015129 1015129 200 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold962 SAMTools SNP 1015303 1015303 13.9 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C6%2C0:10 scaffold962 SAMTools SNP 1015911 1015911 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C14%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1017733 1017733 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold962 SAMTools SNP 1018011 1018011 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold962 SAMTools SNP 1018069 1018069 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold962 SAMTools SNP 1018625 1018625 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1018715 1018715 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold962 SAMTools SNP 1019194 1019194 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C7%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold962 SAMTools SNP 1019203 1019203 101 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C2%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.0029%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:131%2C0%2C255:99 scaffold962 SAMTools SNP 1019523 1019523 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold962 SAMTools SNP 1019836 1019836 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold962 SAMTools SNP 1019845 1019845 118 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0050%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D0.52%2C0.068%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:148%2C0%2C221:99 scaffold962 SAMTools SNP 1021611 1021611 193 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.25%2C0.33%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C255:99 scaffold962 SAMTools SNP 1021629 1021629 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.53%2C0.055%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold962 SAMTools SNP 1022001 1022001 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1022082 1022082 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C1%2C5%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold962 SAMTools SNP 1022235 1022235 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C19%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold962 SAMTools SNP 1022423 1022423 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C5%2C2%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold962 SAMTools SNP 1022483 1022483 192 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold962 SAMTools SNP 1022489 1022489 169 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold962 SAMTools SNP 1023146 1023146 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold962 SAMTools SNP 1023357 1023357 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C3.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold962 SAMTools SNP 1023590 1023590 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1023933 1023933 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1023991 1023991 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold962 SAMTools SNP 1025370 1025370 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.35%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C189:99 scaffold962 SAMTools SNP 1025385 1025385 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C2:5 scaffold962 SAMTools SNP 1025451 1025451 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C30%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.5;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1025646 1025646 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C7%2C19%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.093%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1025712 1025712 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C10%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1025962 1025962 191 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C10%2C30%2C3%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.22%2C8.8e-45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C255:99 scaffold962 SAMTools SNP 1026163 1026163 6.02 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold962 SAMTools SNP 1027749 1027749 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1028124 1028124 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1029312 1029312 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1029345 1029345 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold962 SAMTools SNP 1031034 1031034 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 1035106 1035106 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0202%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.067%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C116:37 scaffold962 SAMTools SNP 1035164 1035164 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1041493 1041493 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold962 SAMTools SNP 1041529 1041529 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.47%2C0.17%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C217:80 scaffold962 SAMTools SNP 1041544 1041544 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold962 SAMTools SNP 1041900 1041900 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1041905 1041905 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1042019 1042019 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold962 SAMTools SNP 1043048 1043048 195 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C7%2C18%2C0%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.034%2C0.036%2C1%2C5.4e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold962 SAMTools SNP 1044524 1044524 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C35%3BMQ%3D50%3BFQ%3D-259;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C232%2C0:99 scaffold962 SAMTools SNP 1045395 1045395 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold962 SAMTools SNP 1045882 1045882 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D17%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C1%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold962 SAMTools SNP 1045963 1045963 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C14%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1046099 1046099 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C0%2C12%2C17%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.00036%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C200:99 scaffold962 SAMTools SNP 1046528 1046528 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C12%2C20%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.33%2C0.28%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1046546 1046546 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C14%2C9%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1047711 1047711 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C12%2C12%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C6.4e-05%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1047719 1047719 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C1%2C7%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.033%2C0.051%2C1%2C0.054;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold962 SAMTools SNP 1049102 1049102 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C10%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C0.00033%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1049126 1049126 126 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C19%2C2%2C14%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C3.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold962 SAMTools SNP 1049192 1049192 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C3%2C5%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:220%2C0%2C255:99 scaffold962 SAMTools SNP 1049208 1049208 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C5%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.22%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold962 SAMTools SNP 1049913 1049913 30 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold962 SAMTools SNP 1050145 1050145 39 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C7%2C3%2C2%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.2%2C0.14%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold962 SAMTools SNP 1051227 1051227 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D14%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold962 SAMTools SNP 1051603 1051603 117 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C10%2C10%2C9%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.31%2C1.2e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold962 SAMTools SNP 1051861 1051861 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1052234 1052234 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C11%2C3%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.091%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1052288 1052288 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.012%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C90:93 scaffold962 SAMTools SNP 1059043 1059043 200 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.65%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold962 SAMTools SNP 1059127 1059127 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold962 SAMTools SNP 1059136 1059136 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold962 SAMTools SNP 1059145 1059145 34 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold962 SAMTools SNP 1059453 1059453 226 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C3%3BMQ%3D50%3BFQ%3D-29%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C2%2C0:5 scaffold962 SAMTools SNP 1059477 1059477 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C3%3BMQ%3D50%3BFQ%3D184%3BPV4%3D0.59%2C0.0023%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C213:99 scaffold962 SAMTools SNP 1059489 1059489 116 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold962 SAMTools SNP 1059519 1059519 211 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C4%3BMQ%3D50%3BFQ%3D214%3BPV4%3D1%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold962 SAMTools SNP 1060189 1060189 167 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C6%2C1%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.16%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold962 SAMTools SNP 1060823 1060823 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C7%2C1%2C16%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0024%2C0.0012%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold962 SAMTools SNP 1061292 1061292 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.27%2C1%2C1%2C2.3e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold962 SAMTools SNP 1061329 1061329 213 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C27%2C0%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.068%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C236:99 scaffold962 SAMTools SNP 1061350 1061350 65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C5%2C1%2C4%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0061%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold962 SAMTools SNP 1061868 1061868 150 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C31%2C2%2C7%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold962 SAMTools SNP 1062269 1062269 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C27%2C0%2C4%3BMQ%3D50%3BFQ%3D35%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold962 SAMTools SNP 1062399 1062399 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold962 SAMTools SNP 1062438 1062438 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold962 SAMTools SNP 1062471 1062471 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C27%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold962 SAMTools SNP 1062643 1062643 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D109%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C136:99 scaffold962 SAMTools SNP 1063284 1063284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold962 SAMTools SNP 1063329 1063329 109 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold962 SAMTools SNP 1063335 1063335 31.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold962 SAMTools SNP 1063392 1063392 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold962 SAMTools SNP 1063588 1063588 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold962 SAMTools SNP 1063596 1063596 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1063864 1063864 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold962 SAMTools SNP 1063960 1063960 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D101%3BPV4%3D1%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold962 SAMTools SNP 1063962 1063962 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold962 SAMTools SNP 1064209 1064209 28 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C4%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D0.015%2C0.0021%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold962 SAMTools SNP 1064560 1064560 13.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0195%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.4%2C0.0027%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C160:46 scaffold962 SAMTools SNP 1064909 1064909 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C57:60 scaffold962 SAMTools SNP 1064945 1064945 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C4%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold962 SAMTools SNP 1065449 1065449 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C9%2C7%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.58%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C122:99 scaffold962 SAMTools SNP 1067070 1067070 15.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold962 SAMTools SNP 1067076 1067076 15.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold962 SAMTools SNP 1067452 1067452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold962 SAMTools SNP 1067467 1067467 165 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.003%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C198:99 scaffold962 SAMTools SNP 1067533 1067533 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold962 SAMTools SNP 1069953 1069953 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D49%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold962 SAMTools SNP 1070049 1070049 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C12%3BMQ%3D48%3BFQ%3D180%3BPV4%3D0.093%2C1%2C0.076%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold962 SAMTools SNP 1070477 1070477 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1073641 1073641 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D0.43%2C1%2C1%2C0.096;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold962 SAMTools SNP 1076961 1076961 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold962 SAMTools SNP 1080078 1080078 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold962 SAMTools SNP 1080748 1080748 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold962 SAMTools SNP 1080973 1080973 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold962 SAMTools SNP 1081197 1081197 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold962 SAMTools SNP 1081200 1081200 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1081716 1081716 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 1081719 1081719 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C18%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 1090376 1090376 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1090435 1090435 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1098105 1098105 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold962 SAMTools SNP 1111911 1111911 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1132781 1132781 9.53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold962 SAMTools SNP 1134798 1134798 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1135155 1135155 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.00015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold962 SAMTools SNP 1135481 1135481 22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0163%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold962 SAMTools SNP 1135522 1135522 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C5%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.054%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold962 SAMTools SNP 1135571 1135571 122 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.58%2C0.35%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C240:99 scaffold962 SAMTools SNP 1136704 1136704 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C6%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold962 SAMTools SNP 1136734 1136734 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.41%2C1.6e-16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold962 SAMTools SNP 1136827 1136827 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold962 SAMTools SNP 1137301 1137301 11.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1141757 1141757 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1145145 1145145 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold962 SAMTools SNP 1145209 1145209 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold962 SAMTools SNP 1147820 1147820 22.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C24%2C0:41 scaffold962 SAMTools SNP 1147911 1147911 18.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C2.9e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C107:51 scaffold962 SAMTools SNP 1152941 1152941 77 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C136:99 scaffold962 SAMTools SNP 1152959 1152959 80 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C0.19%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold962 SAMTools SNP 1153191 1153191 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 1153193 1153193 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold962 SAMTools SNP 1154111 1154111 18.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold962 SAMTools SNP 1159655 1159655 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0133%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold962 SAMTools SNP 1162935 1162935 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold962 SAMTools SNP 1163037 1163037 17.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold962 SAMTools SNP 1163337 1163337 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1164615 1164615 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 1164633 1164633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1166569 1166569 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1172058 1172058 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 1172449 1172449 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C246:63 scaffold962 SAMTools SNP 1172450 1172450 55 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold962 SAMTools SNP 1173886 1173886 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold962 SAMTools SNP 1191129 1191129 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold962 SAMTools SNP 1206776 1206776 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold962 SAMTools SNP 1207089 1207089 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C9%3BMQ%3D50%3BFQ%3D129%3BPV4%3D1%2C0.0053%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold962 SAMTools SNP 1208228 1208228 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C152:99 scaffold962 SAMTools SNP 1208383 1208383 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold962 SAMTools SNP 1208488 1208488 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C177:79 scaffold962 SAMTools SNP 1208854 1208854 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.42%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C226:76 scaffold962 SAMTools SNP 1209010 1209010 194 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C131:99 scaffold962 SAMTools SNP 1209594 1209594 68 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.2%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C227:99 scaffold962 SAMTools SNP 1215104 1215104 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D1%2C1%2C1%2C0.0039;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C226:99 scaffold962 SAMTools SNP 1215414 1215414 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C17%3BMQ%3D50%3BFQ%3D-103;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C88%2C12:99 scaffold962 SAMTools SNP 1215450 1215450 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C8%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 1216492 1216492 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1216529 1216529 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold962 SAMTools SNP 1216532 1216532 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold962 SAMTools SNP 1216791 1216791 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C5%2C9%3BMQ%3D47%3BFQ%3D22%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C49:52 scaffold962 SAMTools SNP 1216890 1216890 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D47%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold962 SAMTools SNP 1217338 1217338 28 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.4e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold962 SAMTools SNP 1218639 1218639 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1218648 1218648 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1222262 1222262 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1222272 1222272 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1222577 1222577 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold962 SAMTools SNP 1222623 1222623 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold962 SAMTools SNP 1224569 1224569 187 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold962 SAMTools SNP 1224581 1224581 187 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D189%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C225:99 scaffold962 SAMTools SNP 1225524 1225524 92 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:124%2C9%2C0:16 scaffold962 SAMTools SNP 1225550 1225550 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.18%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C127:76 scaffold962 SAMTools SNP 1226493 1226493 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.015%2C1%2C1%2C0.0032;FORMAT=GT:PL:GQ;SAMPLE=0/1:175%2C0%2C172:99 scaffold962 SAMTools SNP 1228434 1228434 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.041;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold962 SAMTools SNP 1228459 1228459 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.036%2C4.6e-07%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C177:39 scaffold962 SAMTools SNP 1228971 1228971 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D121%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C148:99 scaffold962 SAMTools SNP 1230204 1230204 80 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0142%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.3%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C76:79 scaffold962 SAMTools SNP 1230292 1230292 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C0.051%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C157:53 scaffold962 SAMTools SNP 1230682 1230682 84 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold962 SAMTools SNP 1230855 1230855 6.79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold962 SAMTools SNP 1230928 1230928 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C5.2e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C85:49 scaffold962 SAMTools SNP 1231306 1231306 51.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:84%2C18%2C0:33 scaffold962 SAMTools SNP 1233718 1233718 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C16%2C6%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.095%2C3e-50%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold962 SAMTools SNP 1233777 1233777 64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C7%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:97%2C30%2C0:57 scaffold962 SAMTools SNP 1236468 1236468 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C3%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D0.33%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C14:17 scaffold962 SAMTools SNP 1237056 1237056 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold962 SAMTools SNP 1240378 1240378 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold962 SAMTools SNP 1245819 1245819 172 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C1%2C6%3BMQ%3D43%3BFQ%3D175%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C228:99 scaffold962 SAMTools SNP 1245841 1245841 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D47%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold962 SAMTools SNP 1249176 1249176 12.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C6%2C13%2C7%3BMQ%3D44%3BFQ%3D15.1%3BPV4%3D0.047%2C6.6e-31%2C0.23%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C248:44 scaffold962 SAMTools SNP 1249192 1249192 23.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:56%2C12%2C0:21 scaffold962 SAMTools SNP 1249383 1249383 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D212%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C88%2C19%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C7.8e-104%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1249495 1249495 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C23%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C96%2C0:99 scaffold962 SAMTools SNP 1249829 1249829 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C22%2C10%2C1%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.001%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold962 SAMTools SNP 1249836 1249836 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C12%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.00093%2C1%2C0.038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1249849 1249849 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C12%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.024%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1250449 1250449 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C6%2C0%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.0034%2C1%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold962 SAMTools SNP 1261850 1261850 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 1262193 1262193 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1263447 1263447 6.95 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold962 SAMTools SNP 1264453 1264453 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C140:31 scaffold962 SAMTools SNP 1264612 1264612 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1266539 1266539 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1266570 1266570 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1268315 1268315 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1268757 1268757 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1269034 1269034 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1327477 1327477 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1331869 1331869 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1331931 1331931 35.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold962 SAMTools SNP 1332660 1332660 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.47%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C98:30 scaffold962 SAMTools SNP 1332666 1332666 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C103:40 scaffold962 SAMTools SNP 1332918 1332918 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1398525 1398525 187 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D-45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:220%2C18%2C0:33 scaffold962 SAMTools SNP 1400764 1400764 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1.4e-15%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold962 SAMTools SNP 1400902 1400902 41.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C12%2C0:21 scaffold962 SAMTools SNP 1404491 1404491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D259%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C146%2C8%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1404524 1404524 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C138%2C8%2C59%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1409062 1409062 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C47%2C214%3BMQ%3D48%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold962 SAMTools SNP 1409560 1409560 9.53 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold962 SAMTools SNP 1411266 1411266 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold962 SAMTools SNP 1412070 1412070 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D166%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C7%2C19%2C114%3BMQ%3D50%3BFQ%3D209%3BPV4%3D2.3e-12%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold962 SAMTools SNP 1412858 1412858 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C47%3BMQ%3D50%3BFQ%3D-235;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C208%2C0:99 scaffold962 SAMTools SNP 1412885 1412885 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C27%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold962 SAMTools SNP 1412901 1412901 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C150%2C21%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D0.13%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold962 SAMTools SNP 1412918 1412918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D157%2C17%2C80%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.31%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1413426 1413426 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D268%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold962 SAMTools SNP 1413501 1413501 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C96%2C2%2C9%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.05%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold962 SAMTools SNP 1413997 1413997 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C17%2C1%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.2e-05%2C1%2C1%2C3.5e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1414013 1414013 102 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C18%2C1%2C6%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.098%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold962 SAMTools SNP 1414152 1414152 176 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C5%2C4%3BMQ%3D50%3BFQ%3D179%3BPV4%3D1%2C1%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:206%2C0%2C255:99 scaffold962 SAMTools SNP 1414766 1414766 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold962 SAMTools SNP 1414834 1414834 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C14%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold962 SAMTools SNP 1414843 1414843 46 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold962 SAMTools SNP 1415037 1415037 214 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C246:99 scaffold962 SAMTools SNP 1417205 1417205 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C36%2C5%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold962 SAMTools SNP 1417217 1417217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C16%3BMQ%3D50%3BFQ%3D-61%3BPV4%3D0.43%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C34%2C0:65 scaffold962 SAMTools SNP 1418001 1418001 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C32%2C1%2C10%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.67%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold962 SAMTools SNP 1423813 1423813 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold962 SAMTools SNP 1423822 1423822 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold962 SAMTools SNP 1424297 1424297 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1426592 1426592 19.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold962 SAMTools SNP 1428985 1428985 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1428991 1428991 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold962 SAMTools SNP 1436584 1436584 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold962 SAMTools SNP 1437494 1437494 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C0.021%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold962 SAMTools SNP 1437686 1437686 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold962 SAMTools SNP 1440708 1440708 6.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0058%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D15%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.21%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold962 SAMTools SNP 1440717 1440717 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C3%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C239:99 scaffold962 SAMTools SNP 1440810 1440810 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C4%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.054%2C0.043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold962 SAMTools SNP 1441236 1441236 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C9%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0032%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1441291 1441291 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C13%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold962 SAMTools SNP 1441688 1441688 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C8%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C30%2C0:57 scaffold962 SAMTools SNP 1441909 1441909 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold962 SAMTools SNP 1442146 1442146 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.24%2C0.00033%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C240:46 scaffold962 SAMTools SNP 1442438 1442438 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C21%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C66%2C0:99 scaffold962 SAMTools SNP 1442476 1442476 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C1%2C7%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.38%2C9.6e-12%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C230:42 scaffold962 SAMTools SNP 1442543 1442543 67 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C24%2C0:45 scaffold962 SAMTools SNP 1442611 1442611 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold962 SAMTools SNP 1442625 1442625 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.018%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold962 SAMTools SNP 1444791 1444791 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C7%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.0047%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C195:99 scaffold962 SAMTools SNP 1446518 1446518 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold962 SAMTools SNP 1446638 1446638 162 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold962 SAMTools SNP 1447832 1447832 139 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C186:99 scaffold962 SAMTools SNP 1447895 1447895 147 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C1%2C4%3BMQ%3D50%3BFQ%3D150%3BPV4%3D0.55%2C0.15%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C223:99 scaffold962 SAMTools SNP 1449593 1449593 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C121:99 scaffold962 SAMTools SNP 1449596 1449596 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0160%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C157:82 scaffold962 SAMTools SNP 1449608 1449608 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0343%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold962 SAMTools SNP 1449626 1449626 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C3.2e-06%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C107:43 scaffold962 SAMTools SNP 1449818 1449818 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold962 SAMTools SNP 1449839 1449839 197 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C245:99 scaffold962 SAMTools SNP 1449851 1449851 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D200%3BPV4%3D1%2C0.088%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C227:99 scaffold962 SAMTools SNP 1451252 1451252 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C3%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0003%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold962 SAMTools SNP 1456206 1456206 26.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C6%2C0:10 scaffold962 SAMTools SNP 1460458 1460458 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C27%2C2%2C57%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.0023%2C2.2e-65%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold962 SAMTools SNP 1462534 1462534 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold962 SAMTools SNP 1462899 1462899 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold962 SAMTools SNP 1463096 1463096 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C8%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2.9e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold963 SAMTools SNP 4763 4763 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 5189 5189 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 6470 6470 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.026%2C5.4e-21%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold963 SAMTools SNP 61175 61175 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C27%2C0:50 scaffold963 SAMTools SNP 62037 62037 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.066%2C0.00019%2C1%2C0.0022;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold963 SAMTools SNP 66578 66578 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.0013%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 66612 66612 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C1%2C4%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.28%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C255:99 scaffold963 SAMTools SNP 66801 66801 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 67149 67149 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D208%3BPV4%3D0.014%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C235:99 scaffold963 SAMTools SNP 67218 67218 172 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C5%2C5%3BMQ%3D50%3BFQ%3D175%3BPV4%3D0.42%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C255:99 scaffold963 SAMTools SNP 67236 67236 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold963 SAMTools SNP 67655 67655 89 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold963 SAMTools SNP 67701 67701 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C1%2C16%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.00022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 69308 69308 131 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C1%2C4%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold963 SAMTools SNP 69395 69395 126 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.49%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C121:99 scaffold963 SAMTools SNP 70314 70314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold963 SAMTools SNP 70320 70320 154 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C245:99 scaffold963 SAMTools SNP 70380 70380 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.36%2C0.11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C234:99 scaffold963 SAMTools SNP 71260 71260 77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C62%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C187%2C0:99 scaffold963 SAMTools SNP 73415 73415 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C13%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold963 SAMTools SNP 73574 73574 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold963 SAMTools SNP 73900 73900 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 75229 75229 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold963 SAMTools SNP 75242 75242 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.083%2C0.0068%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C219:47 scaffold963 SAMTools SNP 79427 79427 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C29%2C0%2C21%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.074%2C1%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold963 SAMTools SNP 79919 79919 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0019%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C168:31 scaffold963 SAMTools SNP 81024 81024 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C7%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.41%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 81328 81328 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold963 SAMTools SNP 81652 81652 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0040%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C25%2C3%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.01%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold963 SAMTools SNP 81691 81691 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.44%2C0.11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C144:99 scaffold963 SAMTools SNP 82765 82765 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C0.24%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold963 SAMTools SNP 82795 82795 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C4%2C7%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C54:57 scaffold963 SAMTools SNP 82823 82823 40 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C0.031;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C183:73 scaffold963 SAMTools SNP 82859 82859 172 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:205%2C15%2C0:27 scaffold963 SAMTools SNP 82988 82988 214 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold963 SAMTools SNP 83006 83006 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 84943 84943 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.094;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold963 SAMTools SNP 84964 84964 55.8 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0142%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C47%2C41%2C86%2C0%2C83:10 scaffold963 SAMTools SNP 84984 84984 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold963 SAMTools SNP 85192 85192 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold963 SAMTools SNP 85342 85342 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold963 SAMTools SNP 86644 86644 143 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold963 SAMTools SNP 86680 86680 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold963 SAMTools SNP 91525 91525 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 93345 93345 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C2%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold963 SAMTools SNP 93865 93865 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C25%2C1%3BMQ%3D50%3BFQ%3D-75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold963 SAMTools SNP 94986 94986 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C26%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold963 SAMTools SNP 95424 95424 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 95462 95462 46.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0185%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C6%2C0:10 scaffold963 SAMTools SNP 95555 95555 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 96295 96295 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold963 SAMTools SNP 96821 96821 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold963 SAMTools SNP 97224 97224 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C16%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C129%2C0:99 scaffold963 SAMTools SNP 98068 98068 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 98136 98136 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C21%2C0%2C7%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.31%2C8.8e-18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold963 SAMTools SNP 98608 98608 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C44%2C20%3BMQ%3D50%3BFQ%3D-173%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C146%2C0:99 scaffold963 SAMTools SNP 105118 105118 9.52 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C39%2C9%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D9.8e-05%2C2.3e-08%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold963 SAMTools SNP 105367 105367 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C21%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold963 SAMTools SNP 105390 105390 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 105416 105416 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C10%2C13%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.06%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 106191 106191 204 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C2%2C6%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.39%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:234%2C0%2C255:99 scaffold963 SAMTools SNP 106202 106202 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C4%2C1%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.32%2C0.0017%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold963 SAMTools SNP 106219 106219 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C21%2C0:39 scaffold963 SAMTools SNP 108164 108164 13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold963 SAMTools SNP 109057 109057 215 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C31%2C0%2C29%3BMQ%3D50%3BFQ%3D218%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold963 SAMTools SNP 109378 109378 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C21%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold963 SAMTools SNP 110876 110876 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold963 SAMTools SNP 112374 112374 72 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C13%2C5%2C1%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.38%2C0.16%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold963 SAMTools SNP 112500 112500 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D163%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C108%2C51%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C0.00027%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold963 SAMTools SNP 113021 113021 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0268%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C83:31 scaffold963 SAMTools SNP 113820 113820 77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0233%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C34:37 scaffold963 SAMTools SNP 114027 114027 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 115179 115179 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D258%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C67%2C67%2C45%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 152217 152217 185 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold963 SAMTools SNP 156108 156108 34.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C15%2C0:27 scaffold963 SAMTools SNP 314987 314987 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 315327 315327 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 319222 319222 61.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C6%2C0:10 scaffold963 SAMTools SNP 415662 415662 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 416485 416485 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold963 SAMTools SNP 416518 416518 53 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C24:27 scaffold963 SAMTools SNP 416944 416944 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold963 SAMTools SNP 416962 416962 180 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D40%3BPV4%3D0.18%2C0.088%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C67:70 scaffold963 SAMTools SNP 417019 417019 179 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0000%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D0.1%2C0.082%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold963 SAMTools SNP 417908 417908 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C9%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold963 SAMTools SNP 418015 418015 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.039%2C0.12%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold963 SAMTools SNP 418028 418028 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C17%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold963 SAMTools SNP 418326 418326 44 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.55%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold963 SAMTools SNP 418622 418622 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C6%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold963 SAMTools SNP 418727 418727 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C10%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold963 SAMTools SNP 418736 418736 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C2%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold963 SAMTools SNP 418933 418933 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C22%2C6%2C12%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0048%2C1%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C247:99 scaffold963 SAMTools SNP 418962 418962 21 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.46%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold963 SAMTools SNP 419339 419339 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold963 SAMTools SNP 419365 419365 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold963 SAMTools SNP 419576 419576 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 419590 419590 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 419861 419861 4.61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold963 SAMTools SNP 420237 420237 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold963 SAMTools SNP 420668 420668 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold963 SAMTools SNP 420716 420716 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.33%2C1%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C82:85 scaffold963 SAMTools SNP 425973 425973 19.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold963 SAMTools SNP 425987 425987 16.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold963 SAMTools SNP 427297 427297 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold963 SAMTools SNP 427806 427806 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 427844 427844 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold963 SAMTools SNP 428548 428548 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold964 SAMTools SNP 155 155 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold964 SAMTools SNP 66920 66920 67.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold964 SAMTools SNP 78197 78197 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D251%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D82%2C0%2C19%2C0%3BMQ%3D16%3BFQ%3D-128%3BPV4%3D1%2C4.8e-64%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C101%2C0:72 scaffold964 SAMTools SNP 78518 78518 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C14%3BMQ%3D19%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C42%2C0:75 scaffold964 SAMTools SNP 80495 80495 5.85 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C5%2C1%2C0%3BMQ%3D21%3BFQ%3D-29%3BPV4%3D0.17%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C2%2C0:3 scaffold964 SAMTools SNP 80558 80558 7.9 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D23%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C1%2C0:3 scaffold964 SAMTools SNP 81139 81139 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold964 SAMTools SNP 89581 89581 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold964 SAMTools SNP 89650 89650 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D45%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold964 SAMTools SNP 91791 91791 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C23%2C42%2C9%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.15%2C0.35%2C0.012%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold964 SAMTools SNP 94250 94250 5.29 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold964 SAMTools SNP 96951 96951 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold964 SAMTools SNP 97547 97547 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold964 SAMTools SNP 99064 99064 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold964 SAMTools SNP 104305 104305 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold964 SAMTools SNP 104355 104355 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0091%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold964 SAMTools SNP 104812 104812 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold964 SAMTools SNP 105022 105022 3.54 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.013%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold964 SAMTools SNP 105053 105053 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold964 SAMTools SNP 105054 105054 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold964 SAMTools SNP 105106 105106 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.087;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold964 SAMTools SNP 105136 105136 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold964 SAMTools SNP 105177 105177 203 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C4%2C12%2C1%3BMQ%3D50%3BFQ%3D206%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold964 SAMTools SNP 105324 105324 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C11%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold964 SAMTools SNP 105360 105360 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C6%2C13%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C246:99 scaffold964 SAMTools SNP 105580 105580 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold964 SAMTools SNP 106818 106818 95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C9%2C2%2C3%3BMQ%3D50%3BFQ%3D98%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold964 SAMTools SNP 106873 106873 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.28%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold964 SAMTools SNP 106883 106883 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.068%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold964 SAMTools SNP 106953 106953 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D177%3BPV4%3D1%2C0.25%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C232:99 scaffold964 SAMTools SNP 106965 106965 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold964 SAMTools SNP 110725 110725 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0006%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.44%2C2.1e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C152:36 scaffold964 SAMTools SNP 112014 112014 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C62%3BMQ%3D50%3BFQ%3D-177%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C150%2C0:99 scaffold964 SAMTools SNP 112016 112016 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C45%2C0%2C21%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold964 SAMTools SNP 112767 112767 23 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D26%3BPV4%3D0.53%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold964 SAMTools SNP 115952 115952 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C8%2C0%2C12%3BMQ%3D50%3BFQ%3D198%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold964 SAMTools SNP 115982 115982 83 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C0.43%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold964 SAMTools SNP 117248 117248 66.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C11%2C8%3BMQ%3D50%3BFQ%3D-37%3BPV4%3D1%2C1.3e-07%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C10%2C0:17 scaffold964 SAMTools SNP 117589 117589 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C26%2C33%2C43%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.71%2C3.4e-31%2C0.00091%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold964 SAMTools SNP 117916 117916 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C5%3BMQ%3D50%3BFQ%3D147%3BPV4%3D0.29%2C0.00045%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C200:99 scaffold964 SAMTools SNP 120275 120275 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold964 SAMTools SNP 121583 121583 24 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.077%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold964 SAMTools SNP 122217 122217 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold964 SAMTools SNP 122279 122279 8.64 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold964 SAMTools SNP 122656 122656 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold964 SAMTools SNP 122735 122735 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.33%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold964 SAMTools SNP 123223 123223 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C163:85 scaffold964 SAMTools SNP 134313 134313 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold964 SAMTools SNP 134379 134379 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold964 SAMTools SNP 136594 136594 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.23%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C171:34 scaffold964 SAMTools SNP 137092 137092 56 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C3%2C0:6 scaffold964 SAMTools SNP 148754 148754 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C21%2C0:39 scaffold964 SAMTools SNP 149004 149004 31.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C6%2C0:10 scaffold964 SAMTools SNP 149839 149839 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C0%2C16%3BMQ%3D41%3BFQ%3D30%3BPV4%3D1%2C1.5e-30%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C179:60 scaffold964 SAMTools SNP 150153 150153 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold967 SAMTools SNP 779 779 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 124472 124472 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 124554 124554 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold967 SAMTools SNP 124816 124816 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold967 SAMTools SNP 128378 128378 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D8.97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C44:37 scaffold967 SAMTools SNP 129789 129789 5.29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold967 SAMTools SNP 130695 130695 3.01 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D4.66%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C44:28 scaffold967 SAMTools SNP 130822 130822 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D5.82%3BPV4%3D0.33%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C41:31 scaffold967 SAMTools SNP 132500 132500 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C44:31 scaffold967 SAMTools SNP 144414 144414 99 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C9%2C0:16 scaffold967 SAMTools SNP 144442 144442 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 179504 179504 117 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:150%2C15%2C0:27 scaffold967 SAMTools SNP 179510 179510 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold967 SAMTools SNP 179564 179564 128 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C4%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:161%2C36%2C0%2C159%2C22%2C156:69 scaffold967 SAMTools SNP 179600 179600 160 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C5%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:193%2C87%2C0:99 scaffold967 SAMTools SNP 179651 179651 9.31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C6%2C0:8 scaffold967 SAMTools SNP 179669 179669 92.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C21%2C0:39 scaffold967 SAMTools SNP 180331 180331 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C33%2C4%3BMQ%3D50%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold967 SAMTools SNP 186487 186487 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C19%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold967 SAMTools SNP 186832 186832 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.0047%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold967 SAMTools SNP 186837 186837 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold967 SAMTools SNP 186852 186852 3.54 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C200:30 scaffold967 SAMTools SNP 187092 187092 84 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.31%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold967 SAMTools SNP 187456 187456 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.29%2C0.24%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C79:82 scaffold967 SAMTools SNP 188140 188140 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold967 SAMTools SNP 188347 188347 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold967 SAMTools SNP 188464 188464 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0017%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 188618 188618 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold967 SAMTools SNP 188689 188689 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 188857 188857 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold967 SAMTools SNP 200411 200411 38 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C1%2C2%3BMQ%3D50%3BFQ%3D41%3BPV4%3D1%2C0.14%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold967 SAMTools SNP 201827 201827 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C7%2C5%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.68%2C1.1e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold967 SAMTools SNP 206464 206464 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold967 SAMTools SNP 211726 211726 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold967 SAMTools SNP 212253 212253 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold967 SAMTools SNP 212686 212686 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C165:99 scaffold967 SAMTools SNP 212881 212881 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold967 SAMTools SNP 213422 213422 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0126%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D1%2C0.024%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold967 SAMTools SNP 214772 214772 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold967 SAMTools SNP 215513 215513 210 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C23%2C3%2C8%3BMQ%3D50%3BFQ%3D213%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:240%2C0%2C255:99 scaffold967 SAMTools SNP 215519 215519 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C23%2C3%2C8%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold967 SAMTools SNP 215578 215578 43 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C14%2C0%2C7%3BMQ%3D50%3BFQ%3D46%3BPV4%3D0.071%2C0.0034%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold967 SAMTools SNP 215916 215916 202 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C17%2C4%2C4%3BMQ%3D50%3BFQ%3D205%3BPV4%3D0.38%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:232%2C0%2C255:99 scaffold967 SAMTools SNP 220177 220177 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold967 SAMTools SNP 220187 220187 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold967 SAMTools SNP 220354 220354 151 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold967 SAMTools SNP 220429 220429 46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C9%2C0:16 scaffold967 SAMTools SNP 220443 220443 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 220924 220924 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 220954 220954 47.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold967 SAMTools SNP 221323 221323 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold967 SAMTools SNP 221370 221370 33 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0232%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold967 SAMTools SNP 221455 221455 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold967 SAMTools SNP 221488 221488 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold967 SAMTools SNP 221876 221876 131 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold967 SAMTools SNP 223742 223742 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C2%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold967 SAMTools SNP 223789 223789 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold967 SAMTools SNP 224084 224084 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C5%2C33%3BMQ%3D50%3BFQ%3D-94%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C67%2C0:99 scaffold967 SAMTools SNP 224140 224140 33 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C253:66 scaffold967 SAMTools SNP 224165 224165 89 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C4%2C0%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold967 SAMTools SNP 224166 224166 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.085%2C0.2%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C119:99 scaffold967 SAMTools SNP 272303 272303 8.65 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold967 SAMTools SNP 276650 276650 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0121%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold967 SAMTools SNP 279174 279174 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.012%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C91:37 scaffold967 SAMTools SNP 283024 283024 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C8%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold967 SAMTools SNP 283323 283323 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold967 SAMTools SNP 283357 283357 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 284164 284164 74 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.038%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C218:99 scaffold967 SAMTools SNP 284936 284936 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C9%2C0:15 scaffold967 SAMTools SNP 285077 285077 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C9%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.48%2C0.27%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold967 SAMTools SNP 330834 330834 63 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D81%2C22%2C22%2C1%3BMQ%3D50%3BFQ%3D66%3BPV4%3D0.073%2C5.8e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C255:96 scaffold967 SAMTools SNP 332221 332221 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D160%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C120%2C40%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold967 SAMTools SNP 335593 335593 29 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C9%2C0:16 scaffold967 SAMTools SNP 339320 339320 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold967 SAMTools SNP 340268 340268 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C6%2C3%3BMQ%3D45%3BFQ%3D132%3BPV4%3D1%2C1%2C0.082%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold967 SAMTools SNP 343760 343760 43 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C235:76 scaffold967 SAMTools SNP 354764 354764 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold967 SAMTools SNP 373478 373478 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0183%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold967 SAMTools SNP 373481 373481 64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold967 SAMTools SNP 373547 373547 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C0.017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C156:99 scaffold967 SAMTools SNP 373766 373766 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold967 SAMTools SNP 375140 375140 92 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C15%2C34%2C12%3BMQ%3D50%3BFQ%3D95%3BPV4%3D0.65%2C1.3e-91%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:122%2C0%2C255:99 scaffold967 SAMTools SNP 375362 375362 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D341%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C301%2C21%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold967 SAMTools SNP 375893 375893 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 385123 385123 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold967 SAMTools SNP 385688 385688 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold968 SAMTools SNP 402 402 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold968 SAMTools SNP 424 424 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold968 SAMTools SNP 563 563 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C218:99 scaffold968 SAMTools SNP 910 910 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold968 SAMTools SNP 4465 4465 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold968 SAMTools SNP 4668 4668 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C32%2C2%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold968 SAMTools SNP 4696 4696 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C7%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 31236 31236 219 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C6%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.19%2C0.21%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold968 SAMTools SNP 31284 31284 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D12%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold968 SAMTools SNP 32591 32591 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D38%2C7%2C41%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.77%2C1%2C1%2C0.076;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 33255 33255 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold968 SAMTools SNP 34906 34906 75 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D78%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold968 SAMTools SNP 35214 35214 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C18%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold968 SAMTools SNP 36083 36083 205 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C7%2C1%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.067%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C63:66 scaffold968 SAMTools SNP 36525 36525 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.094%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C255:99 scaffold968 SAMTools SNP 36543 36543 18.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.49%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold968 SAMTools SNP 36820 36820 3.01 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0205%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D11%2C8%2C2%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold968 SAMTools SNP 36847 36847 9.52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold968 SAMTools SNP 36889 36889 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C14%2C20%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.007%2C1%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 37137 37137 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C115%2C13%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold968 SAMTools SNP 37169 37169 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C2%2C37%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0037%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 39304 39304 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C53%2C1%2C54%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 42709 42709 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C14%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C0.095%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 42733 42733 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.056%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 44104 44104 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.022%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 44511 44511 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C46%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold968 SAMTools SNP 44630 44630 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C52%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold968 SAMTools SNP 44669 44669 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C9%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold968 SAMTools SNP 45049 45049 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold968 SAMTools SNP 45089 45089 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C4%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold968 SAMTools SNP 45520 45520 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C42%2C4%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.48%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 45529 45529 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C33%3BMQ%3D50%3BFQ%3D-165;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C138%2C0:99 scaffold968 SAMTools SNP 46145 46145 142 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C6%3BMQ%3D50%3BFQ%3D145%3BPV4%3D0.43%2C2.7e-05%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:172%2C0%2C255:99 scaffold968 SAMTools SNP 46211 46211 203 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C10%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.57%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold968 SAMTools SNP 46667 46667 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.57%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold968 SAMTools SNP 47037 47037 80.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C12%2C0:21 scaffold968 SAMTools SNP 47070 47070 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D10%2C7%2C3%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.52%2C0.22%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold968 SAMTools SNP 47705 47705 200 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold968 SAMTools SNP 47729 47729 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold968 SAMTools SNP 47880 47880 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold968 SAMTools SNP 48026 48026 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 48249 48249 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 48355 48355 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0038%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold968 SAMTools SNP 48387 48387 214 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold968 SAMTools SNP 48812 48812 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C32%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold968 SAMTools SNP 49251 49251 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold968 SAMTools SNP 49278 49278 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold968 SAMTools SNP 49537 49537 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold968 SAMTools SNP 49546 49546 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold968 SAMTools SNP 50242 50242 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold968 SAMTools SNP 50290 50290 99 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold968 SAMTools SNP 50293 50293 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold968 SAMTools SNP 50398 50398 40 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C1%2C1%2C1.5e-12;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C235:73 scaffold968 SAMTools SNP 50450 50450 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 50466 50466 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.066%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 50853 50853 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C14%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold968 SAMTools SNP 51240 51240 179 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C0%2C10%3BMQ%3D50%3BFQ%3D182%3BPV4%3D1%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C255:99 scaffold968 SAMTools SNP 51264 51264 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D3.02%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C27:30 scaffold968 SAMTools SNP 51276 51276 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 54630 54630 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C14%2C40%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.034%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold968 SAMTools SNP 54665 54665 214 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C29%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold968 SAMTools SNP 55868 55868 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 74256 74256 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 74290 74290 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold968 SAMTools SNP 105343 105343 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold968 SAMTools SNP 131289 131289 34 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C30%2C0:56 scaffold968 SAMTools SNP 131335 131335 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.6e-07%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C132:54 scaffold968 SAMTools SNP 131897 131897 32.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0015%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold97 SAMTools SNP 9442 9442 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold97 SAMTools SNP 11668 11668 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold97 SAMTools SNP 12527 12527 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold97 SAMTools SNP 12606 12606 49 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C24%2C0:45 scaffold97 SAMTools SNP 12800 12800 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold97 SAMTools SNP 12832 12832 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold97 SAMTools SNP 38975 38975 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold97 SAMTools SNP 40993 40993 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold97 SAMTools SNP 48833 48833 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold97 SAMTools SNP 49526 49526 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold97 SAMTools SNP 52411 52411 9.53 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold97 SAMTools SNP 52700 52700 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D149%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C223:99 scaffold97 SAMTools SNP 80297 80297 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold97 SAMTools SNP 84993 84993 88.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:121%2C12%2C0:21 scaffold97 SAMTools SNP 85045 85045 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold97 SAMTools SNP 85046 85046 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold97 SAMTools SNP 91482 91482 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold97 SAMTools SNP 91500 91500 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold97 SAMTools SNP 94796 94796 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold97 SAMTools SNP 95392 95392 143 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold97 SAMTools SNP 130051 130051 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C4%2C3%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.3%2C6.1e-09%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold971 SAMTools SNP 17766 17766 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 17788 17788 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 36594 36594 3.41 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold971 SAMTools SNP 42278 42278 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 117415 117415 23 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C5.1e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C94:56 scaffold971 SAMTools SNP 117979 117979 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.061%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold971 SAMTools SNP 118878 118878 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.066;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold971 SAMTools SNP 118924 118924 100 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0372%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold971 SAMTools SNP 129802 129802 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0153%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold971 SAMTools SNP 129832 129832 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 130198 130198 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold971 SAMTools SNP 130731 130731 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0054%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold971 SAMTools SNP 130827 130827 47 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0187%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold971 SAMTools SNP 139571 139571 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 139779 139779 216 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold971 SAMTools SNP 139813 139813 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 140286 140286 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold971 SAMTools SNP 140305 140305 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold971 SAMTools SNP 140354 140354 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold971 SAMTools SNP 140678 140678 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold971 SAMTools SNP 141208 141208 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C0%2C6%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.014%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold971 SAMTools SNP 141283 141283 6.98 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0227%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.6e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C110:37 scaffold971 SAMTools SNP 141372 141372 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D5%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.12%2C3.1e-18%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold971 SAMTools SNP 142777 142777 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 143458 143458 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C13%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold971 SAMTools SNP 143486 143486 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C4%2C4%3BMQ%3D50%3BFQ%3D222%3BPV4%3D0.41%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold971 SAMTools SNP 148626 148626 3.52 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C9%2C0:7 scaffold971 SAMTools SNP 148678 148678 21 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D8.56%3BPV4%3D1%2C0.0019%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C35:38 scaffold971 SAMTools SNP 150351 150351 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C33%2C0%2C8%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C0.0045%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold971 SAMTools SNP 151375 151375 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold971 SAMTools SNP 151401 151401 98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D91.5%3BPV4%3D1%2C0.066%2C1%2C0.09;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C119:99 scaffold971 SAMTools SNP 151421 151421 73.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C18%2C0:33 scaffold971 SAMTools SNP 152726 152726 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C16%2C1%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.35%2C0.32%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold971 SAMTools SNP 154185 154185 161 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0044%3BAF1%3D0.5336%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C9:12 scaffold971 SAMTools SNP 154188 154188 135 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C15%2C0:27 scaffold971 SAMTools SNP 154242 154242 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C38%3BMQ%3D50%3BFQ%3D-199;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C172%2C0:99 scaffold971 SAMTools SNP 155127 155127 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold971 SAMTools SNP 155164 155164 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 365 365 20.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold973 SAMTools SNP 6274 6274 184 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C57:60 scaffold973 SAMTools SNP 6389 6389 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 6402 6402 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 15310 15310 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C0.0052;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold973 SAMTools SNP 15322 15322 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold973 SAMTools SNP 15452 15452 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C2%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold973 SAMTools SNP 15902 15902 183 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold973 SAMTools SNP 16046 16046 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 16094 16094 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold973 SAMTools SNP 16100 16100 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold973 SAMTools SNP 17695 17695 132 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:165%2C15%2C0:27 scaffold973 SAMTools SNP 19980 19980 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C3.1e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C69:72 scaffold973 SAMTools SNP 45213 45213 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold973 SAMTools SNP 45216 45216 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold973 SAMTools SNP 45331 45331 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C3%2C0%3BMQ%3D43%3BFQ%3D69%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C175:99 scaffold973 SAMTools SNP 45790 45790 20 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C0%2C3%2C0%3BMQ%3D39%3BFQ%3D23%3BPV4%3D1%2C0.0052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C179:53 scaffold973 SAMTools SNP 45817 45817 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C1%3BMQ%3D41%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold973 SAMTools SNP 46416 46416 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C27%2C13%2C9%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C0.091;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 46975 46975 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 46979 46979 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 47003 47003 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold973 SAMTools SNP 47049 47049 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C10%2C0%3BMQ%3D47%3BFQ%3D107%3BPV4%3D0.12%2C0.0088%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold973 SAMTools SNP 47130 47130 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 47161 47161 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 49592 49592 221 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D46%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:254%2C39%2C0:75 scaffold973 SAMTools SNP 49616 49616 19.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C3%2C0%3BMQ%3D49%3BFQ%3D22%3BPV4%3D0.015%2C0.013%2C0.013%2C0.00019;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold973 SAMTools SNP 49706 49706 48 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D48%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C39%2C0:74 scaffold973 SAMTools SNP 51225 51225 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C110:36 scaffold973 SAMTools SNP 51251 51251 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold973 SAMTools SNP 52030 52030 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C6%2C2%3BMQ%3D47%3BFQ%3D33%3BPV4%3D0.13%2C5.9e-06%2C0.32%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C63:63 scaffold973 SAMTools SNP 53059 53059 36 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D41%3BFQ%3D-30%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C3%2C0:6 scaffold973 SAMTools SNP 54246 54246 186 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D58%2C4%2C14%2C7%3BMQ%3D34%3BFQ%3D189%3BPV4%3D0.0045%2C0.49%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold973 SAMTools SNP 54254 54254 130 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C6%2C25%2C0%3BMQ%3D36%3BFQ%3D133%3BPV4%3D0.19%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C255:99 scaffold973 SAMTools SNP 54739 54739 220 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D66%2C2%2C27%2C3%3BMQ%3D34%3BFQ%3D222%3BPV4%3D0.17%2C1%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:250%2C0%2C255:99 scaffold973 SAMTools SNP 54751 54751 185 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C7%2C51%2C0%3BMQ%3D35%3BFQ%3D188%3BPV4%3D0.0054%2C4.6e-05%2C0.19%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C255:99 scaffold973 SAMTools SNP 54848 54848 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D133%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C96%2C7%2C29%3BMQ%3D38%3BFQ%3D172%3BPV4%3D0.00043%2C0.48%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C199:99 scaffold973 SAMTools SNP 55499 55499 85 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C43%2C0%2C23%3BMQ%3D43%3BFQ%3D88%3BPV4%3D1e-05%2C0.071%2C0.011%2C4.4e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold973 SAMTools SNP 55503 55503 83 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C44%2C0%2C22%3BMQ%3D43%3BFQ%3D86%3BPV4%3D2.2e-05%2C1%2C0.029%2C4.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold973 SAMTools SNP 55507 55507 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C52%2C14%2C14%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.066%2C3.4e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 55519 55519 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C4%2C16%2C11%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 55540 55540 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C4%2C13%3BMQ%3D49%3BFQ%3D203%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C230:99 scaffold973 SAMTools SNP 55563 55563 201 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C0%2C16%3BMQ%3D49%3BFQ%3D204%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold973 SAMTools SNP 56816 56816 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C34%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold973 SAMTools SNP 56842 56842 36 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold973 SAMTools SNP 58191 58191 183 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C12%2C0%3BMQ%3D48%3BFQ%3D186%3BPV4%3D0.042%2C1%2C0.46%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold973 SAMTools SNP 58276 58276 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C13%2C0%2C10%3BMQ%3D47%3BFQ%3D108%3BPV4%3D1%2C1.7e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C217:99 scaffold973 SAMTools SNP 66289 66289 20.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold973 SAMTools SNP 66298 66298 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold973 SAMTools SNP 70777 70777 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold973 SAMTools SNP 82129 82129 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 82538 82538 41.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold973 SAMTools SNP 96893 96893 13.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold973 SAMTools SNP 97655 97655 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 97673 97673 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 102363 102363 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0064%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 103755 103755 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C47%2C4%2C18%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.07%2C1.3e-08%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold973 SAMTools SNP 111615 111615 20.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D38%3BFQ%3D-39%3BPV4%3D1%2C1.5e-06%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C12%2C0:21 scaffold973 SAMTools SNP 117192 117192 30.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:62%2C6%2C0:10 scaffold973 SAMTools SNP 117294 117294 110 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold973 SAMTools SNP 117507 117507 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0059%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 117531 117531 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 117982 117982 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C38:41 scaffold973 SAMTools SNP 118600 118600 61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold973 SAMTools SNP 119597 119597 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0049%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 121433 121433 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold973 SAMTools SNP 121437 121437 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold973 SAMTools SNP 121488 121488 143 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold973 SAMTools SNP 129979 129979 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold973 SAMTools SNP 130154 130154 14.7 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C12%2C0:19 scaffold973 SAMTools SNP 130916 130916 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold973 SAMTools SNP 130981 130981 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 131407 131407 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 133702 133702 53.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0131%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C6%2C0:10 scaffold973 SAMTools SNP 135469 135469 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C4%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.0021%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C166:60 scaffold973 SAMTools SNP 149966 149966 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C43%2C0%3BMQ%3D50%3BFQ%3D-156;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C129%2C0:99 scaffold973 SAMTools SNP 150001 150001 84.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C6%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D0.45%2C3e-05%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C17:20 scaffold973 SAMTools SNP 150663 150663 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C14%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold973 SAMTools SNP 150684 150684 156 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C9%2C21%3BMQ%3D50%3BFQ%3D-70%3BPV4%3D1%2C3e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C43%2C0:83 scaffold973 SAMTools SNP 150789 150789 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C8%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold973 SAMTools SNP 151515 151515 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold973 SAMTools SNP 151551 151551 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 151924 151924 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 151935 151935 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 152027 152027 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D194%3BPV4%3D0.067%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C241:99 scaffold973 SAMTools SNP 152042 152042 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C11%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold973 SAMTools SNP 152049 152049 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C17%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C0.0046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 153098 153098 213 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C34%2C0%2C28%3BMQ%3D50%3BFQ%3D216%3BPV4%3D1%2C0.049%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:243%2C0%2C255:99 scaffold973 SAMTools SNP 153119 153119 221 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C31%2C0%2C36%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.0054%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:251%2C0%2C255:99 scaffold973 SAMTools SNP 153167 153167 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C11%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold973 SAMTools SNP 153405 153405 101 . . REF=T;ALT=C,A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0200%3BAF1%3D0.501%3BAC1%3D1%3BDP4%3D1%2C0%2C7%2C5%3BMQ%3D50%3BFQ%3D-4.75%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C124%2C148%2C157%2C0%2C186:27 scaffold973 SAMTools SNP 158225 158225 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 161809 161809 177 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold973 SAMTools SNP 163246 163246 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 163514 163514 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 163571 163571 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 163610 163610 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold973 SAMTools SNP 164738 164738 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C24%2C0:45 scaffold973 SAMTools SNP 165763 165763 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.0034%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold973 SAMTools SNP 167252 167252 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold973 SAMTools SNP 167419 167419 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold973 SAMTools SNP 167885 167885 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C61%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold973 SAMTools SNP 168478 168478 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold973 SAMTools SNP 168759 168759 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C28%2C1%3BMQ%3D50%3BFQ%3D213%3BPV4%3D1%2C0.11%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C240:99 scaffold973 SAMTools SNP 168807 168807 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D50%2C3%2C25%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D3.1e-05%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 169029 169029 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C40%2C30%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D6.3e-07%2C6.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 169068 169068 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C80%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 169326 169326 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C23%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C12:15 scaffold973 SAMTools SNP 169354 169354 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0325%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 169387 169387 58.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold973 SAMTools SNP 170325 170325 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C39%2C0:75 scaffold973 SAMTools SNP 170432 170432 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold973 SAMTools SNP 170435 170435 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold973 SAMTools SNP 170699 170699 29 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D0.28%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C255:62 scaffold973 SAMTools SNP 170760 170760 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D90%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C74%2C8%3BMQ%3D43%3BFQ%3D-81%3BPV4%3D1%2C1%2C0.29%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold973 SAMTools SNP 171097 171097 137 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C6%2C19%2C0%3BMQ%3D41%3BFQ%3D140%3BPV4%3D0.33%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:167%2C0%2C255:99 scaffold973 SAMTools SNP 171212 171212 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C35%2C1%2C13%3BMQ%3D40%3BFQ%3D85%3BPV4%3D0.16%2C0.35%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C255:99 scaffold973 SAMTools SNP 171234 171234 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 171236 171236 53 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 171685 171685 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold973 SAMTools SNP 172045 172045 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold973 SAMTools SNP 172060 172060 15.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold973 SAMTools SNP 172081 172081 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.083%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold973 SAMTools SNP 172107 172107 72 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.46%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C228:99 scaffold973 SAMTools SNP 172120 172120 110 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold973 SAMTools SNP 172658 172658 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C4%2C21%3BMQ%3D47%3BFQ%3D122%3BPV4%3D1%2C1%2C0.15%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C149:99 scaffold973 SAMTools SNP 172694 172694 30 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.11%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold973 SAMTools SNP 173455 173455 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C66%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold973 SAMTools SNP 173497 173497 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold973 SAMTools SNP 173602 173602 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 173620 173620 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D41%3BFQ%3D45.6%3BPV4%3D1%2C1%2C0.16%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C74:76 scaffold973 SAMTools SNP 193107 193107 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 193317 193317 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 193537 193537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 195173 195173 79.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D43%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:112%2C12%2C0:21 scaffold973 SAMTools SNP 195646 195646 63.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D35%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C12%2C0:21 scaffold973 SAMTools SNP 195661 195661 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C2%3BMQ%3D35%3BFQ%3D10.5%3BPV4%3D1%2C1%2C0.21%2C0.0045;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold973 SAMTools SNP 195675 195675 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 196196 196196 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 196468 196468 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold973 SAMTools SNP 196664 196664 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 196726 196726 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold973 SAMTools SNP 196741 196741 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold973 SAMTools SNP 197020 197020 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.26%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 199061 199061 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 199079 199079 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.038%2C1%2C0.0014;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C70:36 scaffold973 SAMTools SNP 199996 199996 44 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D41%3BFQ%3D45.6%3BPV4%3D1%2C1%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C78:76 scaffold973 SAMTools SNP 200000 200000 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0367%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D39%3BFQ%3D8.65%3BPV4%3D1%2C1%2C0.25%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C35:38 scaffold973 SAMTools SNP 200011 200011 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D29%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold973 SAMTools SNP 200241 200241 51 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C4%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C0.31%2C0.19%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C32:35 scaffold973 SAMTools SNP 200757 200757 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0447%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold973 SAMTools SNP 201463 201463 80 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold973 SAMTools SNP 201685 201685 5.46 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C1%3BMQ%3D44%3BFQ%3D7.8%3BPV4%3D0.52%2C0.13%2C0.0093%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C223:34 scaffold973 SAMTools SNP 205354 205354 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 205407 205407 58.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C6%2C0:10 scaffold973 SAMTools SNP 206250 206250 123 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0417%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C32:35 scaffold973 SAMTools SNP 206274 206274 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0367%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold973 SAMTools SNP 206331 206331 12.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D15.1%3BPV4%3D1%2C1%2C0.21%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C88:44 scaffold973 SAMTools SNP 206342 206342 8.64 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D43%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.0016;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C90:40 scaffold973 SAMTools SNP 206530 206530 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D45%3BFQ%3D49.7%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C88:80 scaffold973 SAMTools SNP 206591 206591 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 206603 206603 108 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C4%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold973 SAMTools SNP 207563 207563 47.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:79%2C6%2C0:10 scaffold973 SAMTools SNP 212669 212669 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 213008 213008 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 213075 213075 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 213129 213129 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D46%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C138:31 scaffold973 SAMTools SNP 213518 213518 99 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C191:99 scaffold973 SAMTools SNP 213690 213690 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 219496 219496 3.98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.029%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C0:6 scaffold973 SAMTools SNP 220409 220409 47 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0.0083%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold973 SAMTools SNP 221269 221269 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D35%3BFQ%3D6.2%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C78:31 scaffold973 SAMTools SNP 221311 221311 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0449%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C1%2C0%2C3%3BMQ%3D44%3BFQ%3D6.99%3BPV4%3D0.048%2C1%2C0.0092%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C204:33 scaffold973 SAMTools SNP 221356 221356 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.2%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold973 SAMTools SNP 233098 233098 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold973 SAMTools SNP 237827 237827 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 237846 237846 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 238776 238776 16.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold973 SAMTools SNP 239142 239142 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D41%3BFQ%3D12.5%3BPV4%3D1%2C0%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold973 SAMTools SNP 239618 239618 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 241876 241876 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold973 SAMTools SNP 242098 242098 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 244672 244672 13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold973 SAMTools SNP 245289 245289 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 245619 245619 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0363%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 246379 246379 13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D29%3BFQ%3D-27%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C0:3 scaffold973 SAMTools SNP 246440 246440 104 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D43%3BFQ%3D-32%3BPV4%3D1%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C5%2C0:9 scaffold973 SAMTools SNP 260777 260777 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 275213 275213 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 275382 275382 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 275397 275397 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 275545 275545 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 275599 275599 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 293874 293874 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 293901 293901 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 293962 293962 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 294315 294315 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold973 SAMTools SNP 294348 294348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 294517 294517 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 296422 296422 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 296474 296474 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 296512 296512 104 . . REF=A;ALT=T,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0103%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C47%2C38%2C133%2C0%2C130:16 scaffold973 SAMTools SNP 296663 296663 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 296821 296821 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 298331 298331 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold973 SAMTools SNP 298366 298366 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold973 SAMTools SNP 298403 298403 50.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C17:20 scaffold973 SAMTools SNP 298414 298414 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C129:30 scaffold973 SAMTools SNP 298668 298668 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold973 SAMTools SNP 310692 310692 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 312754 312754 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 312794 312794 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 313057 313057 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 313068 313068 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 324830 324830 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold973 SAMTools SNP 324839 324839 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 327884 327884 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 328504 328504 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 328547 328547 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold973 SAMTools SNP 329561 329561 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 329760 329760 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 329815 329815 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 330336 330336 93 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 330575 330575 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 347203 347203 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 347617 347617 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 347629 347629 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 350569 350569 47 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold973 SAMTools SNP 350594 350594 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.22%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C77:80 scaffold973 SAMTools SNP 350607 350607 47 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold973 SAMTools SNP 350632 350632 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold973 SAMTools SNP 350640 350640 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.4%2C0.28%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold973 SAMTools SNP 350731 350731 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 350733 350733 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 350976 350976 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold973 SAMTools SNP 350989 350989 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 351039 351039 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold973 SAMTools SNP 351046 351046 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.086%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C51:54 scaffold973 SAMTools SNP 351388 351388 215 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C1%2C20%2C0%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.46%2C0.26%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold973 SAMTools SNP 351406 351406 155 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C6%2C1%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:185%2C0%2C255:99 scaffold973 SAMTools SNP 351427 351427 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0051%2C0.11%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 351559 351559 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C6%2C5%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 351691 351691 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 352126 352126 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D46%3BFQ%3D48%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C75:78 scaffold973 SAMTools SNP 352156 352156 146 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C7%2C0%3BMQ%3D49%3BFQ%3D149%3BPV4%3D1%2C0.036%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C249:99 scaffold973 SAMTools SNP 352196 352196 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C8%2C0%3BMQ%3D49%3BFQ%3D165%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C238:99 scaffold973 SAMTools SNP 352650 352650 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C220:99 scaffold973 SAMTools SNP 352899 352899 10.4 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C5.1e-29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C208:42 scaffold973 SAMTools SNP 353054 353054 66 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C19%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C2.6e-19%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C73%2C0:99 scaffold973 SAMTools SNP 353358 353358 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D5%2C0%2C37%2C62%3BMQ%3D50%3BFQ%3D-140%3BPV4%3D0.0093%2C3.7e-56%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C113%2C0:75 scaffold973 SAMTools SNP 353476 353476 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C17%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C51%2C0:99 scaffold973 SAMTools SNP 353691 353691 76 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C107%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1.9e-24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C255%2C0:99 scaffold973 SAMTools SNP 354103 354103 33 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C45%2C0:75 scaffold973 SAMTools SNP 354414 354414 52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C19%2C15%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.051%2C4.5e-40%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold973 SAMTools SNP 354433 354433 67 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C3%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C78%2C0:99 scaffold973 SAMTools SNP 354906 354906 215 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C6%2C5%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.15%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold973 SAMTools SNP 356165 356165 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C82%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 356607 356607 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C38%2C43%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 357666 357666 63 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C24%2C0:45 scaffold973 SAMTools SNP 358820 358820 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 359309 359309 35 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.017%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C41:44 scaffold973 SAMTools SNP 359390 359390 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C59%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold973 SAMTools SNP 359405 359405 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C46%2C7%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.24%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 360674 360674 70 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D86%2C29%2C11%2C5%3BMQ%3D50%3BFQ%3D73%3BPV4%3D0.56%2C1.2e-09%2C1%2C1.2e-17;FORMAT=GT:PL:GQ;SAMPLE=0/1:100%2C0%2C255:99 scaffold973 SAMTools SNP 360692 360692 116 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D244%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D116%2C20%2C86%2C20%3BMQ%3D50%3BFQ%3D119%3BPV4%3D0.39%2C2.3e-132%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C255:99 scaffold973 SAMTools SNP 361187 361187 23 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C12%2C3%2C9%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C5e-17%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold973 SAMTools SNP 361254 361254 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C25%2C25%3BMQ%3D50%3BFQ%3D203%3BPV4%3D0.2%2C5.1e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C255:99 scaffold973 SAMTools SNP 361642 361642 31.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0169%3BAF1%3D0.508%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D-12.3%3BPV4%3D0.33%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C15:18 scaffold973 SAMTools SNP 361793 361793 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D164%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C36%2C20%2C77%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0068%2C1.8e-59%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 361883 361883 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C20%2C26%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C0.0091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 361922 361922 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D127%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C19%2C31%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.085%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 362218 362218 106 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D245%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C89%2C6%2C25%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.27%2C0.00036%2C1%2C7.5e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold973 SAMTools SNP 362909 362909 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C43%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold973 SAMTools SNP 364142 364142 40.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold973 SAMTools SNP 364319 364319 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 373786 373786 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold973 SAMTools SNP 373788 373788 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.028;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold973 SAMTools SNP 375141 375141 205 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D146%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C82%2C0%3BMQ%3D50%3BFQ%3D-138%3BPV4%3D0.00084%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C111%2C0:99 scaffold973 SAMTools SNP 382746 382746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C50%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold973 SAMTools SNP 390134 390134 212 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C0%2C42%2C0%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C0.05%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C255:99 scaffold973 SAMTools SNP 395848 395848 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C3%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 395902 395902 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C36%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 396491 396491 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0268%3BAF1%3D0.543%3BAC1%3D1%3BDP4%3D0%2C1%2C8%2C5%3BMQ%3D50%3BFQ%3D-19%3BPV4%3D0.43%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C8:11 scaffold973 SAMTools SNP 396494 396494 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C19%2C5%2C0%3BMQ%3D49%3BFQ%3D21%3BPV4%3D0.14%2C1%2C1%2C0.0036;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold973 SAMTools SNP 397265 397265 142 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D46%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C18%2C0:33 scaffold973 SAMTools SNP 397746 397746 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C67%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 397809 397809 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C24%2C19%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.49%2C1%2C1%2C0.001;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 398382 398382 208 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C0%2C27%3BMQ%3D50%3BFQ%3D211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C255:99 scaffold973 SAMTools SNP 398615 398615 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C23%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold973 SAMTools SNP 398640 398640 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold973 SAMTools SNP 398768 398768 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold973 SAMTools SNP 399098 399098 217 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D43%2C0%2C35%2C0%3BMQ%3D50%3BFQ%3D219%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold973 SAMTools SNP 399366 399366 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C30%2C24%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.00023%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 409967 409967 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C12%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold973 SAMTools SNP 412351 412351 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C26%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.3%2C2.3e-13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C163:99 scaffold973 SAMTools SNP 412972 412972 5.44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C9%2C0:9 scaffold973 SAMTools SNP 413168 413168 217 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:250%2C33%2C0:63 scaffold973 SAMTools SNP 413547 413547 126 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D381%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C137%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C255%2C0:99 scaffold973 SAMTools SNP 414414 414414 73 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1%2C0.036%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C156:99 scaffold973 SAMTools SNP 414415 414415 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C236:99 scaffold973 SAMTools SNP 415493 415493 149 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D149%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C64%2C1%2C58%3BMQ%3D50%3BFQ%3D152%3BPV4%3D6.3e-06%2C2.9e-10%2C1%2C1.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold973 SAMTools SNP 416029 416029 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D257%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C133%2C12%2C99%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 417692 417692 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C24%2C19%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.079%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 418076 418076 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 431205 431205 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold973 SAMTools SNP 444425 444425 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 444740 444740 40 . . REF=A;ALT=T,G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C206%2C182%2C212%2C0%2C185:45 scaffold973 SAMTools SNP 444776 444776 127 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D165%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C63%2C28%2C54%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.08%2C7.5e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold973 SAMTools SNP 445094 445094 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C93%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C255%2C0:99 scaffold973 SAMTools SNP 445241 445241 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold973 SAMTools SNP 447210 447210 43 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.011%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C41:44 scaffold973 SAMTools SNP 450836 450836 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C8.3e-06%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold973 SAMTools SNP 450837 450837 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.067%2C2.8e-07%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C138:46 scaffold973 SAMTools SNP 452111 452111 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D47%2C12%2C17%2C21%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.00083%2C1%2C0.33%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 454122 454122 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C40%2C18%2C24%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.69%2C0.22%2C0.33%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 454882 454882 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C3%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.48%2C1%2C0.00038;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 459320 459320 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C15%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold973 SAMTools SNP 459799 459799 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C9%2C0:16 scaffold973 SAMTools SNP 459943 459943 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.022;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold973 SAMTools SNP 461850 461850 49 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D52%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C184:82 scaffold973 SAMTools SNP 462407 462407 11.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C6%2C0:9 scaffold973 SAMTools SNP 463174 463174 4.14 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5018%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D-7.23%3BPV4%3D0.2%2C0.0016%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C21:26 scaffold973 SAMTools SNP 463859 463859 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C1%2C4%2C0%3BMQ%3D48%3BFQ%3D7.8%3BPV4%3D1%2C0.0018%2C0.1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C208:34 scaffold973 SAMTools SNP 464609 464609 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.0088%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold973 SAMTools SNP 464613 464613 38 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C3%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.0075%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold973 SAMTools SNP 464684 464684 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C13%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C5.5e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold973 SAMTools SNP 464957 464957 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold973 SAMTools SNP 465552 465552 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold973 SAMTools SNP 465916 465916 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0206%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:163%2C12%2C0:21 scaffold973 SAMTools SNP 467058 467058 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C20%2C14%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 467598 467598 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C4.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold973 SAMTools SNP 467622 467622 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C4%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold973 SAMTools SNP 468556 468556 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.055%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 469060 469060 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C27%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold973 SAMTools SNP 469129 469129 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C2%2C12%3BMQ%3D50%3BFQ%3D158%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C185:99 scaffold973 SAMTools SNP 478510 478510 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold973 SAMTools SNP 478537 478537 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold973 SAMTools SNP 487347 487347 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C73%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C255%2C0:99 scaffold973 SAMTools SNP 487707 487707 43.5 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C12%2C0:21 scaffold973 SAMTools SNP 488561 488561 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.18%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold973 SAMTools SNP 488563 488563 18.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.52%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold973 SAMTools SNP 489474 489474 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold973 SAMTools SNP 489486 489486 81 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D84%3BPV4%3D0.015%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:111%2C0%2C255:99 scaffold973 SAMTools SNP 489786 489786 44 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C6%2C1%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.27%2C1%2C1%2C0.00013;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold973 SAMTools SNP 489870 489870 200 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C21%2C0%2C16%3BMQ%3D50%3BFQ%3D203%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C246:99 scaffold973 SAMTools SNP 491274 491274 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D88%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C11%2C38%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.28%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 493983 493983 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C14%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold973 SAMTools SNP 494016 494016 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold973 SAMTools SNP 494021 494021 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C17%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold973 SAMTools SNP 494986 494986 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C7%3BMQ%3D50%3BFQ%3D-208;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C181%2C0:99 scaffold973 SAMTools SNP 499563 499563 50 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.4%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold973 SAMTools SNP 502765 502765 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C4%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold973 SAMTools SNP 502798 502798 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold973 SAMTools SNP 503831 503831 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 505146 505146 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C11%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold973 SAMTools SNP 505395 505395 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 506567 506567 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 506612 506612 141 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C15%2C0:27 scaffold973 SAMTools SNP 506929 506929 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold973 SAMTools SNP 507775 507775 4.13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.082;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C167:31 scaffold973 SAMTools SNP 507800 507800 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 507942 507942 68 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C9%2C0:16 scaffold973 SAMTools SNP 509581 509581 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold973 SAMTools SNP 523204 523204 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 524427 524427 109 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold973 SAMTools SNP 525996 525996 84 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0038%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold973 SAMTools SNP 526001 526001 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.029%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 526040 526040 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0.0014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C114:30 scaffold973 SAMTools SNP 526730 526730 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold973 SAMTools SNP 526842 526842 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0155%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 527059 527059 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold973 SAMTools SNP 527104 527104 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 527119 527119 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 528974 528974 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 529108 529108 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 529913 529913 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 530300 530300 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0168%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 530909 530909 4.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold973 SAMTools SNP 534239 534239 103 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D667%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D286%2C18%2C39%2C17%3BMQ%3D50%3BFQ%3D106%3BPV4%3D1e-06%2C0.018%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:133%2C0%2C255:99 scaffold973 SAMTools SNP 534316 534316 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1907%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D450%2C38%2C139%2C44%3BMQ%3D50%3BFQ%3D225%3BPV4%3D9.9e-08%2C9.3e-22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 539163 539163 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2074%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1973%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 539500 539500 15.2 . . REF=C;ALT=G,T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C231%2C207%2C253%2C0%2C232:35 scaffold973 SAMTools SNP 539527 539527 223 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C1%2C9%3BMQ%3D50%3BFQ%3D207%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C234:99 scaffold973 SAMTools SNP 539548 539548 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold973 SAMTools SNP 540029 540029 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D45%3BFQ%3D8.65%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C112:36 scaffold973 SAMTools SNP 540294 540294 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0148%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 540302 540302 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0184%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold973 SAMTools SNP 540577 540577 56.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C21%2C0:39 scaffold973 SAMTools SNP 540857 540857 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 541158 541158 96.3 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C15%2C0:27 scaffold973 SAMTools SNP 541188 541188 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 541200 541200 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold973 SAMTools SNP 542626 542626 211 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C24%3BMQ%3D50%3BFQ%3D118%3BPV4%3D3.8e-07%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C145:99 scaffold973 SAMTools SNP 542877 542877 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C16%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold973 SAMTools SNP 542889 542889 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0015%3BAF1%3D0.504%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-9.5%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C18:21 scaffold973 SAMTools SNP 542937 542937 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 542966 542966 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 543367 543367 93 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 544640 544640 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C9%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.72%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 545100 545100 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C4%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C0.05%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 545122 545122 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C10%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold973 SAMTools SNP 545227 545227 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C16%2C0%2C7%3BMQ%3D50%3BFQ%3D107%3BPV4%3D0.29%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C255:99 scaffold973 SAMTools SNP 545236 545236 112 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C14%2C0%2C6%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.54%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold973 SAMTools SNP 546116 546116 32.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold973 SAMTools SNP 546638 546638 59 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C28%2C2%2C26%3BMQ%3D50%3BFQ%3D62%3BPV4%3D1%2C7.3e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:89%2C0%2C255:92 scaffold973 SAMTools SNP 547271 547271 86 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C0%2C5%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.54%2C1%2C1%2C0.44;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C255:99 scaffold973 SAMTools SNP 547274 547274 91 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C13%2C0%2C5%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.55%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold973 SAMTools SNP 547460 547460 48 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.013%2C1%2C0.016;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold973 SAMTools SNP 547527 547527 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C1%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold973 SAMTools SNP 547681 547681 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold973 SAMTools SNP 547913 547913 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold973 SAMTools SNP 551353 551353 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold973 SAMTools SNP 551365 551365 191 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C3%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C216:99 scaffold973 SAMTools SNP 557307 557307 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C14%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:135%2C54%2C0:99 scaffold973 SAMTools SNP 558008 558008 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C121%2C2%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:189%2C255%2C0:99 scaffold973 SAMTools SNP 559183 559183 134 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C67%2C55%2C166%2C0%2C160:21 scaffold973 SAMTools SNP 560154 560154 211 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold973 SAMTools SNP 560196 560196 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0233%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold973 SAMTools SNP 560480 560480 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C2%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold973 SAMTools SNP 560486 560486 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold973 SAMTools SNP 560528 560528 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:215%2C21%2C0:39 scaffold973 SAMTools SNP 560543 560543 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D202%3BPV4%3D7.5e-07%2C1%2C1%2C3.9e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C229:99 scaffold973 SAMTools SNP 563229 563229 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold973 SAMTools SNP 563236 563236 163 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C12%3BMQ%3D50%3BFQ%3D166%3BPV4%3D1%2C5.7e-07%2C1%2C0.068;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold973 SAMTools SNP 563254 563254 207 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C16%2C1%2C9%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C1%2C1%2C2.9e-14;FORMAT=GT:PL:GQ;SAMPLE=0/1:237%2C0%2C255:99 scaffold973 SAMTools SNP 563301 563301 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D0.035%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C255:99 scaffold973 SAMTools SNP 564877 564877 64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D67%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:94%2C0%2C255:97 scaffold973 SAMTools SNP 565327 565327 6.98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0001%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D9%2C3%2C5%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.51%2C1.5e-05%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold973 SAMTools SNP 565814 565814 96 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C45%2C0:87 scaffold973 SAMTools SNP 565865 565865 55.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold973 SAMTools SNP 567762 567762 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C19%3BMQ%3D37%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold973 SAMTools SNP 569209 569209 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D72%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C62%3BMQ%3D50%3BFQ%3D-244;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C217%2C0:99 scaffold973 SAMTools SNP 569904 569904 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.22%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold973 SAMTools SNP 569963 569963 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C6%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 570327 570327 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C8%2C5%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold973 SAMTools SNP 570700 570700 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C5%2C18%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 571129 571129 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C1%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.057%2C3e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold973 SAMTools SNP 573559 573559 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C9%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold973 SAMTools SNP 586582 586582 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 587013 587013 73 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C20%2C17%2C0%3BMQ%3D50%3BFQ%3D76%3BPV4%3D0.02%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold973 SAMTools SNP 587305 587305 205 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D158%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C74%2C28%2C3%3BMQ%3D50%3BFQ%3D208%3BPV4%3D8.1e-11%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C255:99 scaffold973 SAMTools SNP 587323 587323 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D168%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C82%2C18%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00092%2C1%2C1%2C0.00041;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 587368 587368 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C43%2C16%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 587381 587381 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D145%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C37%2C16%2C21%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 588089 588089 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D110%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C37%2C11%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.63%2C0.096%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 588604 588604 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C117%2C35%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 588619 588619 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D156%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C120%2C34%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold973 SAMTools SNP 589176 589176 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.01%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold973 SAMTools SNP 593950 593950 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 595219 595219 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5005%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.05%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C27:30 scaffold973 SAMTools SNP 595261 595261 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 595798 595798 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0245%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 597320 597320 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 597529 597529 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 597547 597547 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 597566 597566 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold973 SAMTools SNP 597733 597733 61 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold973 SAMTools SNP 598732 598732 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 611415 611415 17.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold973 SAMTools SNP 611515 611515 32 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D21.8%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C49:52 scaffold973 SAMTools SNP 612025 612025 139 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:172%2C15%2C0:27 scaffold973 SAMTools SNP 617505 617505 43.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C21%2C0:39 scaffold973 SAMTools SNP 618943 618943 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C15%2C0:27 scaffold973 SAMTools SNP 619034 619034 208 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D1%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:238%2C0%2C164:99 scaffold973 SAMTools SNP 619052 619052 6.98 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold973 SAMTools SNP 619064 619064 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0002%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.22%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold973 SAMTools SNP 619108 619108 8.61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C9%2C0:12 scaffold973 SAMTools SNP 624373 624373 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C16%2C3%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.56%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold973 SAMTools SNP 624412 624412 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C19%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold973 SAMTools SNP 624811 624811 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C8%2C2%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.52%2C0.18%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C143:99 scaffold973 SAMTools SNP 624855 624855 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold973 SAMTools SNP 624868 624868 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C14%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold973 SAMTools SNP 625724 625724 180 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C23%2C0%2C13%3BMQ%3D50%3BFQ%3D183%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold973 SAMTools SNP 625781 625781 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold973 SAMTools SNP 625811 625811 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold973 SAMTools SNP 626593 626593 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.036%2C1.5e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C177:66 scaffold973 SAMTools SNP 626887 626887 201 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:234%2C18%2C0:33 scaffold973 SAMTools SNP 626899 626899 125 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:157%2C12%2C0:21 scaffold973 SAMTools SNP 627115 627115 209 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C3%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.11%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold973 SAMTools SNP 627121 627121 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C2%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 627510 627510 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C37%2C2%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C0.058%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 628132 628132 87.5 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0145%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C12%2C0:21 scaffold973 SAMTools SNP 628174 628174 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.1%2C0.2%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C110:99 scaffold973 SAMTools SNP 628344 628344 97 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0369%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C85:88 scaffold973 SAMTools SNP 628425 628425 122 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C2%3BMQ%3D50%3BFQ%3D125%3BPV4%3D0.6%2C0.006%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C255:99 scaffold973 SAMTools SNP 628595 628595 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C19%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.0024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 628899 628899 26 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D29%3BPV4%3D1%2C0.0062%2C1%2C0.039;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C255:59 scaffold973 SAMTools SNP 628911 628911 46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C2%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.038%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold973 SAMTools SNP 628920 628920 65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C14%2C3%2C2%3BMQ%3D50%3BFQ%3D68%3BPV4%3D0.29%2C0.0081%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold973 SAMTools SNP 628929 628929 112 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C23%2C0%2C12%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.3%2C6.9e-09%2C1%2C2.1e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold973 SAMTools SNP 629182 629182 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C32%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold973 SAMTools SNP 629305 629305 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C15%3BMQ%3D44%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold973 SAMTools SNP 629738 629738 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold973 SAMTools SNP 631047 631047 93 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 631055 631055 93 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 631080 631080 8.64 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 631466 631466 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.012%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold973 SAMTools SNP 635181 635181 21 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.32%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold973 SAMTools SNP 636072 636072 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C12%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold973 SAMTools SNP 636099 636099 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C3%2C0%3BMQ%3D50%3BFQ%3D52%3BPV4%3D0.21%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C255:82 scaffold973 SAMTools SNP 636159 636159 115 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C5%2C7%2C0%3BMQ%3D50%3BFQ%3D118%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C255:99 scaffold973 SAMTools SNP 636493 636493 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C14%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.33%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C70:73 scaffold973 SAMTools SNP 636517 636517 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C13%2C1%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.25%2C0.19%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C217:99 scaffold973 SAMTools SNP 636645 636645 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C4%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold973 SAMTools SNP 636921 636921 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C9%3BMQ%3D50%3BFQ%3D71%3BPV4%3D0.24%2C0.28%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C98:99 scaffold973 SAMTools SNP 637133 637133 16.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.013%2C1%2C0.0069;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold973 SAMTools SNP 637211 637211 182 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C5%2C4%2C3%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.0069%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C255:99 scaffold973 SAMTools SNP 637428 637428 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C8%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 637470 637470 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C11%2C28%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0045%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 637490 637490 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C11%2C10%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 638341 638341 65 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C7%2C2%2C1%3BMQ%3D50%3BFQ%3D68%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:95%2C0%2C255:98 scaffold973 SAMTools SNP 638842 638842 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C35%2C10%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C0.41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 638959 638959 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C24%2C10%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.026%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 639016 639016 21 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C29%2C0%2C4%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C0.47%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C255:54 scaffold973 SAMTools SNP 639031 639031 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C32%2C6%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0091%2C1%2C1%2C1.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 639530 639530 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C7%2C10%3BMQ%3D43%3BFQ%3D152%3BPV4%3D0.68%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold973 SAMTools SNP 639547 639547 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C3%2C6%3BMQ%3D49%3BFQ%3D198%3BPV4%3D0.3%2C0.15%2C0.087%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C255:99 scaffold973 SAMTools SNP 640868 640868 127 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0005%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:159%2C12%2C0:21 scaffold973 SAMTools SNP 641354 641354 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C17%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold973 SAMTools SNP 641541 641541 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold973 SAMTools SNP 641931 641931 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C5%2C19%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold973 SAMTools SNP 642091 642091 163 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C15%2C1%2C8%3BMQ%3D50%3BFQ%3D166%3BPV4%3D0.38%2C0.18%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:193%2C0%2C255:99 scaffold973 SAMTools SNP 642196 642196 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold973 SAMTools SNP 642223 642223 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C6%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold973 SAMTools SNP 642640 642640 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C11%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold973 SAMTools SNP 642667 642667 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold973 SAMTools SNP 642685 642685 46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C233:79 scaffold973 SAMTools SNP 643197 643197 117 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold973 SAMTools SNP 643227 643227 179 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C2%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C84%2C0:99 scaffold973 SAMTools SNP 643257 643257 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 643305 643305 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C26%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C99%2C0:99 scaffold973 SAMTools SNP 643508 643508 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C7%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold973 SAMTools SNP 643649 643649 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0064%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0.05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C177:41 scaffold973 SAMTools SNP 643733 643733 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold973 SAMTools SNP 643915 643915 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.39%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold973 SAMTools SNP 644509 644509 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold973 SAMTools SNP 644548 644548 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.065%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold973 SAMTools SNP 644582 644582 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold973 SAMTools SNP 644611 644611 177 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold973 SAMTools SNP 645561 645561 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C1%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold973 SAMTools SNP 645603 645603 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C7%2C6%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.37%2C0.14%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold973 SAMTools SNP 645630 645630 24 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.011%2C0.45%2C1%2C0.0068;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold973 SAMTools SNP 645693 645693 24 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C6%2C0%2C5%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.0003%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold973 SAMTools SNP 646034 646034 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C36%3BMQ%3D50%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C126%2C0:99 scaffold973 SAMTools SNP 648374 648374 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C63:66 scaffold973 SAMTools SNP 649701 649701 134 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C3%2C6%2C0%3BMQ%3D50%3BFQ%3D137%3BPV4%3D0.23%2C0.41%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:164%2C0%2C255:99 scaffold973 SAMTools SNP 649745 649745 140 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.58%2C0.0012%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C255:99 scaffold973 SAMTools SNP 649877 649877 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D10.5%3BPV4%3D1%2C0.0002%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C38:40 scaffold973 SAMTools SNP 651689 651689 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold973 SAMTools SNP 671358 671358 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 672745 672745 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0069%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold973 SAMTools SNP 672780 672780 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold973 SAMTools SNP 681838 681838 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold973 SAMTools SNP 682355 682355 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold973 SAMTools SNP 682756 682756 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D1%2C0.052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C184:47 scaffold973 SAMTools SNP 682835 682835 81 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:114%2C39%2C0:75 scaffold973 SAMTools SNP 691327 691327 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.022%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold973 SAMTools SNP 691417 691417 28.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:61%2C12%2C0:21 scaffold975 SAMTools SNP 10950 10950 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C0%3BMQ%3D45%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold975 SAMTools SNP 11015 11015 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C14%3BMQ%3D47%3BFQ%3D-138;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C111%2C0:99 scaffold975 SAMTools SNP 12340 12340 209 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D100%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C6%2C35%2C10%3BMQ%3D46%3BFQ%3D212%3BPV4%3D0.17%2C1%2C0.037%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold975 SAMTools SNP 12843 12843 219 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D83%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C16%2C14%2C4%3BMQ%3D49%3BFQ%3D221%3BPV4%3D0.55%2C1%2C0.063%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold975 SAMTools SNP 12900 12900 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C44%2C5%2C58%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 13137 13137 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C116%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 13164 13164 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D60%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C22%2C10%2C20%3BMQ%3D43%3BFQ%3D225%3BPV4%3D0.78%2C0.23%2C0.39%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 13457 13457 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C7%3BMQ%3D16%3BFQ%3D4.69%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C34:31 scaffold975 SAMTools SNP 13575 13575 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0367%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C12%2C4%2C11%3BMQ%3D16%3BFQ%3D6.2%3BPV4%3D1%2C1%2C0.27%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C64:31 scaffold975 SAMTools SNP 13614 13614 34.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D11%2C8%2C10%2C10%3BMQ%3D11%3BFQ%3D-34%3BPV4%3D0.75%2C0.15%2C1%2C0.084;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C7%2C0:12 scaffold975 SAMTools SNP 16439 16439 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C0%2C19%3BMQ%3D50%3BFQ%3D113%3BPV4%3D5.6e-06%2C1%2C1%2C7.6e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C140:99 scaffold975 SAMTools SNP 16802 16802 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C109%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 16841 16841 205 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C14%3BMQ%3D50%3BFQ%3D125%3BPV4%3D1%2C1%2C1%2C4.9e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:235%2C0%2C152:99 scaffold975 SAMTools SNP 17336 17336 146 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D148%3BPV4%3D1%2C0.0036%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C184:99 scaffold975 SAMTools SNP 18043 18043 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D250%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C34%2C215%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 18355 18355 44 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D65%2C31%2C26%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.00023%2C6.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold975 SAMTools SNP 18400 18400 30 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C16%2C16%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.0061%2C2.1e-07%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold975 SAMTools SNP 24687 24687 34.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C18%2C0:33 scaffold975 SAMTools SNP 32340 32340 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 33553 33553 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 33559 33559 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0160%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 33931 33931 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold975 SAMTools SNP 34000 34000 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold975 SAMTools SNP 34748 34748 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold975 SAMTools SNP 35032 35032 143 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold975 SAMTools SNP 35253 35253 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 38250 38250 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold975 SAMTools SNP 38299 38299 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C8%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.21%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold975 SAMTools SNP 38592 38592 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C3%2C0:3 scaffold975 SAMTools SNP 38798 38798 36 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0116%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C229:69 scaffold975 SAMTools SNP 38805 38805 201 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C13%2C0%3BMQ%3D50%3BFQ%3D204%3BPV4%3D0.068%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:231%2C0%2C255:99 scaffold975 SAMTools SNP 39267 39267 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C8%2C20%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.014%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 39952 39952 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C22%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold975 SAMTools SNP 40305 40305 157 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:190%2C18%2C0:33 scaffold975 SAMTools SNP 40863 40863 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 40872 40872 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 42989 42989 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 43027 43027 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 43039 43039 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C62%2C0%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold975 SAMTools SNP 43914 43914 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C66%2C2%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold975 SAMTools SNP 46301 46301 55 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold975 SAMTools SNP 47360 47360 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C76:79 scaffold975 SAMTools SNP 48160 48160 153 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C69%2C183%2C0%2C177:33 scaffold975 SAMTools SNP 58701 58701 34 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C2%3BMQ%3D33%3BFQ%3D11.3%3BPV4%3D0.43%2C0.0017%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C38:41 scaffold975 SAMTools SNP 63877 63877 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 64050 64050 21 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C223:54 scaffold975 SAMTools SNP 64101 64101 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold975 SAMTools SNP 64536 64536 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold975 SAMTools SNP 64711 64711 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C15%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold975 SAMTools SNP 64922 64922 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold975 SAMTools SNP 65810 65810 223 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C7%2C10%3BMQ%3D50%3BFQ%3D-38%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C11%2C0:19 scaffold975 SAMTools SNP 66187 66187 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C3%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.46%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C69:72 scaffold975 SAMTools SNP 66636 66636 138 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0335%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.099;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold975 SAMTools SNP 68153 68153 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C5.2e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C232:55 scaffold975 SAMTools SNP 68309 68309 3.54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0396%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C4.5e-05%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C222:30 scaffold975 SAMTools SNP 68429 68429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C16%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold975 SAMTools SNP 69108 69108 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C15%2C2%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 69643 69643 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C19%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.0032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 69947 69947 224 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C4%2C22%2C1%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:254%2C0%2C255:99 scaffold975 SAMTools SNP 69950 69950 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C1%2C41%2C4%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.66%2C0.22%2C1%2C0.00024;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C254:99 scaffold975 SAMTools SNP 70409 70409 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C2%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold975 SAMTools SNP 70780 70780 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C5%2C14%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0056%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 70798 70798 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C11%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold975 SAMTools SNP 70846 70846 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D96%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C20%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C151%2C0:99 scaffold975 SAMTools SNP 70942 70942 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C19%2C4%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.16%2C3.8e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 70990 70990 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C22%2C5%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 71289 71289 175 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C1%2C6%3BMQ%3D50%3BFQ%3D178%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:205%2C0%2C255:99 scaffold975 SAMTools SNP 71766 71766 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C5%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold975 SAMTools SNP 71793 71793 140 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C4%2C1%3BMQ%3D50%3BFQ%3D143%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C232:99 scaffold975 SAMTools SNP 72342 72342 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C1%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold975 SAMTools SNP 72754 72754 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C1%2C21%2C5%3BMQ%3D50%3BFQ%3D210%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C237:99 scaffold975 SAMTools SNP 72838 72838 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 73132 73132 106 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C16%2C0%2C10%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.00022%2C0.2%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold975 SAMTools SNP 73574 73574 183 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C15%2C26%2C0%3BMQ%3D50%3BFQ%3D186%3BPV4%3D5.1e-05%2C8.6e-08%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:213%2C0%2C255:99 scaffold975 SAMTools SNP 74021 74021 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C4%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.043%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 74168 74168 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C8%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C0.025%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 74729 74729 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C30%3BMQ%3D50%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold975 SAMTools SNP 74867 74867 168 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C12%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:201%2C205%2C0:99 scaffold975 SAMTools SNP 74947 74947 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C38%2C8%2C36%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.17%2C1.6e-67%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold975 SAMTools SNP 77041 77041 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C21%2C7%2C15%3BMQ%3D44%3BFQ%3D225%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 83359 83359 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D422%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D266%2C1%2C154%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D1%2C2.6e-281%2C0.35%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold975 SAMTools SNP 83497 83497 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D787%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D99%2C380%2C63%2C214%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 83889 83889 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D659%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D150%2C218%2C108%2C160%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.93%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 83940 83940 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D393%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D71%2C154%2C34%2C129%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.021%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 84432 84432 42 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D52%2C66%2C1%2C22%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.00013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C255:75 scaffold975 SAMTools SNP 87382 87382 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D278%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C49%2C215%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 87391 87391 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D269%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D37%2C145%2C13%2C71%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 87689 87689 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C49%3BMQ%3D50%3BFQ%3D-175;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C148%2C0:99 scaffold975 SAMTools SNP 89041 89041 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C71%2C0%3BMQ%3D50%3BFQ%3D-241;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C214%2C0:99 scaffold975 SAMTools SNP 89044 89044 211 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C53%2C0%3BMQ%3D50%3BFQ%3D153%3BPV4%3D1%2C1%2C1%2C9.2e-13;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C180:99 scaffold975 SAMTools SNP 90894 90894 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C23%2C10%3BMQ%3D50%3BFQ%3D-79%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C52%2C0:99 scaffold975 SAMTools SNP 94673 94673 48.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C15%2C0:27 scaffold975 SAMTools SNP 94838 94838 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C4%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C2.7e-07%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C115:79 scaffold975 SAMTools SNP 97468 97468 39 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.43%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C225:72 scaffold975 SAMTools SNP 97471 97471 30 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.43%2C0.038%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C225:63 scaffold975 SAMTools SNP 98872 98872 129 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:162%2C18%2C0:33 scaffold975 SAMTools SNP 100279 100279 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold975 SAMTools SNP 100286 100286 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold975 SAMTools SNP 102508 102508 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold975 SAMTools SNP 102567 102567 205 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C30%2C0:57 scaffold975 SAMTools SNP 103310 103310 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 104698 104698 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0244%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.43%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold975 SAMTools SNP 105285 105285 41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C158:74 scaffold975 SAMTools SNP 105665 105665 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.081;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C196:31 scaffold975 SAMTools SNP 105710 105710 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold975 SAMTools SNP 105719 105719 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold975 SAMTools SNP 106104 106104 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold975 SAMTools SNP 106164 106164 28.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0214%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold975 SAMTools SNP 106188 106188 76 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold975 SAMTools SNP 106203 106203 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C154:36 scaffold975 SAMTools SNP 106359 106359 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold975 SAMTools SNP 108470 108470 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.099%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold975 SAMTools SNP 108472 108472 99 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C230:99 scaffold975 SAMTools SNP 108986 108986 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C1%2C67%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1.3e-12%2C0.27%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C85:88 scaffold975 SAMTools SNP 109024 109024 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C1%2C37%3BMQ%3D50%3BFQ%3D145%3BPV4%3D1.1e-10%2C1%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C172:99 scaffold975 SAMTools SNP 109059 109059 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold975 SAMTools SNP 109435 109435 226 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0233%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D0%2C1%2C7%2C8%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C2:5 scaffold975 SAMTools SNP 110262 110262 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold975 SAMTools SNP 110315 110315 177 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold975 SAMTools SNP 110558 110558 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 110738 110738 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0032%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold975 SAMTools SNP 110878 110878 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 119437 119437 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 119998 119998 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0198%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.1%3BPV4%3D1%2C0.073%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C41:44 scaffold975 SAMTools SNP 120060 120060 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold975 SAMTools SNP 120704 120704 171 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0025%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.35%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C32:35 scaffold975 SAMTools SNP 120784 120784 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C12%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.54%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 120939 120939 162 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C8%2C0%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.48%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold975 SAMTools SNP 120969 120969 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.063%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 120993 120993 152 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C1%2C5%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold975 SAMTools SNP 121715 121715 3.55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-3.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C27:29 scaffold975 SAMTools SNP 123286 123286 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C24%2C0:43 scaffold975 SAMTools SNP 123426 123426 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C24%2C0:40 scaffold975 SAMTools SNP 124172 124172 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:168%2C27%2C0:51 scaffold975 SAMTools SNP 124675 124675 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C23%2C7%2C4%3BMQ%3D50%3BFQ%3D195%3BPV4%3D0.74%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:222%2C0%2C255:99 scaffold975 SAMTools SNP 124918 124918 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C25%2C7%2C1%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.00075%2C0.099%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold975 SAMTools SNP 124990 124990 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D107%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C10%2C33%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1.9e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 125637 125637 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C76%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 125721 125721 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold975 SAMTools SNP 126020 126020 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C57%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold975 SAMTools SNP 127112 127112 212 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C18%2C0%3BMQ%3D50%3BFQ%3D139%3BPV4%3D0.07%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:242%2C0%2C166:99 scaffold975 SAMTools SNP 127115 127115 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0121%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D101%3BPV4%3D0.02%2C1%2C1%2C0.00069;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C227:99 scaffold975 SAMTools SNP 128724 128724 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C85%2C26%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold975 SAMTools SNP 129324 129324 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 129613 129613 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C5%3BMQ%3D50%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C66%2C0:99 scaffold975 SAMTools SNP 129694 129694 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C3%2C34%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.13%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 131844 131844 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C12%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.038%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold975 SAMTools SNP 132795 132795 148 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C2%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C0.39%2C1%2C0.00093;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold975 SAMTools SNP 132813 132813 74 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C0%2C6%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.02%2C0.073%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C255:99 scaffold975 SAMTools SNP 134871 134871 6.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C3%2C0:4 scaffold975 SAMTools SNP 136278 136278 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold975 SAMTools SNP 136289 136289 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C1%3BMQ%3D47%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold975 SAMTools SNP 141020 141020 12.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold975 SAMTools SNP 142979 142979 115 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D10%2C5%2C19%2C3%3BMQ%3D22%3BFQ%3D-5.45%3BPV4%3D0.23%2C0.48%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C23:26 scaffold975 SAMTools SNP 143064 143064 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold975 SAMTools SNP 144280 144280 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 145422 145422 7.39 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D25%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C12%2C0:14 scaffold975 SAMTools SNP 166112 166112 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 166280 166280 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 189248 189248 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 193338 193338 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 193903 193903 21 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D0.2%2C0.00012%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C231:54 scaffold975 SAMTools SNP 194682 194682 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold975 SAMTools SNP 195203 195203 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold975 SAMTools SNP 200002 200002 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 200957 200957 15.9 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C6%2C0:10 scaffold975 SAMTools SNP 208413 208413 73.5 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C12%2C0:21 scaffold975 SAMTools SNP 210550 210550 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold975 SAMTools SNP 212463 212463 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold975 SAMTools SNP 212472 212472 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold975 SAMTools SNP 212596 212596 183 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold975 SAMTools SNP 213282 213282 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold975 SAMTools SNP 215413 215413 14.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold975 SAMTools SNP 216207 216207 10.4 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold975 SAMTools SNP 265701 265701 7.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold975 SAMTools SNP 328940 328940 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold975 SAMTools SNP 329111 329111 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold975 SAMTools SNP 329442 329442 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold975 SAMTools SNP 329457 329457 151 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold975 SAMTools SNP 330985 330985 63 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C33%2C0:63 scaffold975 SAMTools SNP 336376 336376 56 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:89%2C33%2C0:63 scaffold975 SAMTools SNP 336406 336406 35.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C15%2C0:27 scaffold975 SAMTools SNP 336451 336451 68.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0342%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold975 SAMTools SNP 336641 336641 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold976 SAMTools SNP 1463 1463 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 1473 1473 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 1522 1522 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 62811 62811 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 63265 63265 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C9%2C0:15 scaffold976 SAMTools SNP 80616 80616 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0086%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold976 SAMTools SNP 80628 80628 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0299%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold976 SAMTools SNP 81042 81042 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0299%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.13%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold976 SAMTools SNP 81072 81072 41 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C197:74 scaffold976 SAMTools SNP 81150 81150 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold976 SAMTools SNP 81539 81539 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C10%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold976 SAMTools SNP 84139 84139 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold976 SAMTools SNP 84157 84157 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold976 SAMTools SNP 85359 85359 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold976 SAMTools SNP 85385 85385 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 85881 85881 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 92107 92107 62 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C1%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:95%2C90%2C0:99 scaffold976 SAMTools SNP 92404 92404 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold976 SAMTools SNP 95174 95174 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold976 SAMTools SNP 95282 95282 214 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C35%2C8:51 scaffold976 SAMTools SNP 96571 96571 50 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C15%2C0%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.015%2C2.1e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C160:83 scaffold976 SAMTools SNP 96703 96703 34 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0148%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C1%2C1%3BMQ%3D50%3BFQ%3D37%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C255:67 scaffold976 SAMTools SNP 97411 97411 32 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C9%2C0:16 scaffold976 SAMTools SNP 97506 97506 53.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:86%2C18%2C0:33 scaffold976 SAMTools SNP 100626 100626 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1360%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C12%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:148%2C42%2C0:81 scaffold976 SAMTools SNP 101992 101992 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C21%2C25%3BMQ%3D50%3BFQ%3D-118%3BPV4%3D1%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C91%2C0:99 scaffold976 SAMTools SNP 101998 101998 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C23%2C8%2C3%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.086%2C0.46%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold976 SAMTools SNP 108129 108129 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D170%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C8%2C81%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold976 SAMTools SNP 109573 109573 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D599%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D273%2C41%2C248%2C32%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C2.8e-144%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold976 SAMTools SNP 117998 117998 12.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C255:44 scaffold976 SAMTools SNP 118023 118023 153 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:186%2C24%2C0:45 scaffold976 SAMTools SNP 123370 123370 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold976 SAMTools SNP 127805 127805 156 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C9%2C3%2C4%3BMQ%3D45%3BFQ%3D159%3BPV4%3D1%2C1%2C1%2C4.5e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:186%2C0%2C255:99 scaffold976 SAMTools SNP 127835 127835 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C25%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold976 SAMTools SNP 128181 128181 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0018%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D4.13%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C29:32 scaffold976 SAMTools SNP 128187 128187 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold976 SAMTools SNP 128307 128307 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 128684 128684 197 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C7%2C1%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C227:99 scaffold976 SAMTools SNP 129037 129037 45 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C6%2C0%3BMQ%3D50%3BFQ%3D48%3BPV4%3D9.4e-05%2C4.6e-08%2C1%2C0.0033;FORMAT=GT:PL:GQ;SAMPLE=0/1:75%2C0%2C255:78 scaffold976 SAMTools SNP 129298 129298 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C6%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold976 SAMTools SNP 129334 129334 148 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D0.23%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C255:99 scaffold976 SAMTools SNP 129340 129340 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold976 SAMTools SNP 129349 129349 28.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C6%2C0:10 scaffold976 SAMTools SNP 129356 129356 52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C34%2C0%2C11%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C0.074%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C194:85 scaffold976 SAMTools SNP 129361 129361 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C53%3BMQ%3D50%3BFQ%3D-202;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C175%2C0:99 scaffold976 SAMTools SNP 132543 132543 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C37%2C3%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold976 SAMTools SNP 135832 135832 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C47%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold976 SAMTools SNP 197189 197189 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 242701 242701 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 242885 242885 131 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C15%2C0:27 scaffold976 SAMTools SNP 245398 245398 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 268255 268255 147 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C6%2C1%3BMQ%3D47%3BFQ%3D72%3BPV4%3D1%2C1%2C0.27%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C99:99 scaffold976 SAMTools SNP 268362 268362 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D0.18%2C1.1e-10%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C172:53 scaffold976 SAMTools SNP 277323 277323 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold976 SAMTools SNP 277969 277969 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 277974 277974 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 280026 280026 197 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C12%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C85:88 scaffold976 SAMTools SNP 280049 280049 179 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C9%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C0.17%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:209%2C0%2C20:23 scaffold976 SAMTools SNP 290537 290537 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 294849 294849 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold976 SAMTools SNP 294896 294896 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold976 SAMTools SNP 295389 295389 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.48%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C149:36 scaffold976 SAMTools SNP 296163 296163 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold976 SAMTools SNP 296433 296433 151 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold976 SAMTools SNP 296492 296492 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold976 SAMTools SNP 296981 296981 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold976 SAMTools SNP 300325 300325 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold976 SAMTools SNP 302019 302019 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.00052%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C114:37 scaffold976 SAMTools SNP 308638 308638 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold976 SAMTools SNP 309708 309708 16.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C0.25%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C96:49 scaffold976 SAMTools SNP 324496 324496 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold976 SAMTools SNP 330652 330652 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold976 SAMTools SNP 330711 330711 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0212%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.05%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C115:33 scaffold976 SAMTools SNP 332673 332673 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold976 SAMTools SNP 333265 333265 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold976 SAMTools SNP 333286 333286 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold976 SAMTools SNP 333746 333746 21.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold976 SAMTools SNP 335601 335601 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0134%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold976 SAMTools SNP 337915 337915 94 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold976 SAMTools SNP 337928 337928 44 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C158:77 scaffold976 SAMTools SNP 338347 338347 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C112:80 scaffold976 SAMTools SNP 338365 338365 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold976 SAMTools SNP 338382 338382 196 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold976 SAMTools SNP 338659 338659 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold976 SAMTools SNP 338698 338698 150 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C132:99 scaffold976 SAMTools SNP 338916 338916 33 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.1%2C0.11%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C112:66 scaffold976 SAMTools SNP 345013 345013 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold976 SAMTools SNP 345621 345621 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold976 SAMTools SNP 383131 383131 31.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold977 SAMTools SNP 53180 53180 151 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold977 SAMTools SNP 53208 53208 151 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold977 SAMTools SNP 57084 57084 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 68642 68642 6.59 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C12%2C0:14 scaffold977 SAMTools SNP 68679 68679 4.77 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0057%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D3.3%3BPV4%3D1%2C2.5e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C29:31 scaffold977 SAMTools SNP 111452 111452 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 145993 145993 32 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.051%2C1.5e-60%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C253:65 scaffold977 SAMTools SNP 149401 149401 7.59 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C6%2C0:7 scaffold977 SAMTools SNP 153543 153543 79 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C220:99 scaffold977 SAMTools SNP 157112 157112 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C5%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold977 SAMTools SNP 157142 157142 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C6%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold977 SAMTools SNP 158287 158287 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C54%2C16%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.55%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 159986 159986 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0057%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C91:30 scaffold977 SAMTools SNP 160036 160036 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 161130 161130 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 161187 161187 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 166499 166499 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0125%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold977 SAMTools SNP 167401 167401 188 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:221%2C75%2C0:99 scaffold977 SAMTools SNP 167607 167607 8.64 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C113:40 scaffold977 SAMTools SNP 168598 168598 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 168623 168623 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C32:35 scaffold977 SAMTools SNP 168687 168687 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0044%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold977 SAMTools SNP 169177 169177 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold977 SAMTools SNP 169704 169704 27 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0175%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.4%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C236:60 scaffold977 SAMTools SNP 173340 173340 88 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:120%2C9%2C0:16 scaffold977 SAMTools SNP 174197 174197 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold977 SAMTools SNP 174737 174737 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold977 SAMTools SNP 174755 174755 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.37%2C1%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C119:99 scaffold977 SAMTools SNP 174898 174898 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0180%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold977 SAMTools SNP 175197 175197 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C168:36 scaffold977 SAMTools SNP 175528 175528 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.044%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C91:33 scaffold977 SAMTools SNP 176804 176804 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 177581 177581 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 177701 177701 14.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.7304%3BAC1%3D1%3BDP4%3D1%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-25%3BPV4%3D1%2C4.5e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C2:5 scaffold977 SAMTools SNP 178108 178108 199 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:232%2C21%2C0:39 scaffold977 SAMTools SNP 178544 178544 50 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C0%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C63%2C0:99 scaffold977 SAMTools SNP 178624 178624 197 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C12%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C199:99 scaffold977 SAMTools SNP 178821 178821 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.17%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold977 SAMTools SNP 179262 179262 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold977 SAMTools SNP 180057 180057 31.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C21%2C0:39 scaffold977 SAMTools SNP 180063 180063 28 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C13%2C0%2C3%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C4.8e-15%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C255:61 scaffold977 SAMTools SNP 183608 183608 27.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C12%2C0:21 scaffold977 SAMTools SNP 183737 183737 25.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C12%2C0:21 scaffold977 SAMTools SNP 184115 184115 103 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C8%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:136%2C33%2C0:63 scaffold977 SAMTools SNP 184193 184193 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold977 SAMTools SNP 184768 184768 170 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0004%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C32:35 scaffold977 SAMTools SNP 184790 184790 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 187978 187978 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 187993 187993 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 190177 190177 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold977 SAMTools SNP 190206 190206 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0081%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.034%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C205:40 scaffold977 SAMTools SNP 190332 190332 94 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D97%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C201:99 scaffold977 SAMTools SNP 193760 193760 190 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold977 SAMTools SNP 194017 194017 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold977 SAMTools SNP 194512 194512 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold977 SAMTools SNP 194728 194728 37.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:69%2C6%2C0:10 scaffold977 SAMTools SNP 197703 197703 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D285%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C232%2C48%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 198393 198393 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C54%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 198492 198492 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C202%2C25%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 198998 198998 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C87%2C365%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 199158 199158 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D308%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C212%2C85%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 199239 199239 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D367%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C143%2C217%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 199809 199809 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D486%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C119%2C364%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 200182 200182 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D262%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C92%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 200398 200398 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D417%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C285%2C126%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 200850 200850 12.2 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D609%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C19%2C10%2C41%2C0%2C38:14 scaffold977 SAMTools SNP 200914 200914 128 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D497%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D59%2C217%2C0%2C220%3BMQ%3D50%3BFQ%3D131%3BPV4%3D8.1e-17%2C6.7e-106%2C1%2C1.4e-28;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold977 SAMTools SNP 201238 201238 145 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C26%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C90%2C0:99 scaffold977 SAMTools SNP 201382 201382 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D583%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C53%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 201391 201391 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D604%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C101%2C174%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 201680 201680 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D221%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C104%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 202153 202153 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C41%2C1%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00068%2C1%2C1%2C0.0058;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 202402 202402 187 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C32%2C2%2C8%3BMQ%3D50%3BFQ%3D190%3BPV4%3D0.6%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:217%2C0%2C255:99 scaffold977 SAMTools SNP 203459 203459 131 . . REF=A;ALT=G,T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:164%2C57%2C0%2C151%2C21%2C145:99 scaffold977 SAMTools SNP 203483 203483 146 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D126%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C58%2C0%2C47%3BMQ%3D50%3BFQ%3D149%3BPV4%3D3.1e-05%2C2.8e-23%2C1%2C1.4e-18;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C255:99 scaffold977 SAMTools SNP 205342 205342 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C13%2C13%2C1%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.086%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C255:99 scaffold977 SAMTools SNP 205360 205360 189 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C14%2C13%2C1%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.08%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold977 SAMTools SNP 220630 220630 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold977 SAMTools SNP 220917 220917 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 220923 220923 44 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0144%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:76%2C9%2C0:16 scaffold977 SAMTools SNP 221261 221261 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 221648 221648 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 221889 221889 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold977 SAMTools SNP 222373 222373 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 223869 223869 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 223894 223894 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 241501 241501 33.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C6%2C0:10 scaffold977 SAMTools SNP 241796 241796 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold977 SAMTools SNP 242094 242094 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 242779 242779 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 242797 242797 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 243771 243771 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 243781 243781 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold977 SAMTools SNP 244205 244205 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold977 SAMTools SNP 244236 244236 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 369754 369754 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 370008 370008 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 401472 401472 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C87%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 402735 402735 31.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C15%2C0:27 scaffold977 SAMTools SNP 404719 404719 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C9%2C0:13 scaffold977 SAMTools SNP 404826 404826 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 408082 408082 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold977 SAMTools SNP 408160 408160 106 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C35%2C18%2C10%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.83%2C3.2e-41%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold977 SAMTools SNP 408175 408175 87 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C26%2C13%2C7%3BMQ%3D50%3BFQ%3D90%3BPV4%3D1%2C2.9e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:117%2C0%2C255:99 scaffold977 SAMTools SNP 408524 408524 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C24%2C10%2C46%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00041%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 408601 408601 6.02 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold977 SAMTools SNP 408615 408615 148 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C14%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C102%2C0:99 scaffold977 SAMTools SNP 409380 409380 26 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0227%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C9%2C0:16 scaffold977 SAMTools SNP 419957 419957 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold977 SAMTools SNP 422851 422851 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 435032 435032 32 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C30%2C0:55 scaffold977 SAMTools SNP 435049 435049 190 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold977 SAMTools SNP 435110 435110 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold977 SAMTools SNP 435484 435484 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C12%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold977 SAMTools SNP 435768 435768 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C19%2C20%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.45%2C0.37%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 435769 435769 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C52%2C26%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold977 SAMTools SNP 438511 438511 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold977 SAMTools SNP 438520 438520 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold977 SAMTools SNP 439958 439958 171 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0297%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:204%2C15%2C0:27 scaffold977 SAMTools SNP 439976 439976 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold977 SAMTools SNP 441507 441507 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C0.0023;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold977 SAMTools SNP 441528 441528 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C10%2C0%3BMQ%3D50%3BFQ%3D185%3BPV4%3D1%2C0.47%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C247:99 scaffold977 SAMTools SNP 443839 443839 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 444470 444470 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold977 SAMTools SNP 451017 451017 146 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.33%2C0.27%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C116:99 scaffold977 SAMTools SNP 451041 451041 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.39%2C1%2C3.5e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C124:99 scaffold977 SAMTools SNP 454687 454687 108 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C4%2C0%3BMQ%3D46%3BFQ%3D10.4%3BPV4%3D0.33%2C1%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C37:40 scaffold977 SAMTools SNP 454692 454692 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0217%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.063%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold977 SAMTools SNP 455398 455398 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold977 SAMTools SNP 455405 455405 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.17%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold977 SAMTools SNP 455649 455649 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold977 SAMTools SNP 463289 463289 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C2%3BMQ%3D47%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:252%2C75%2C0:99 scaffold977 SAMTools SNP 463508 463508 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0281%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold977 SAMTools SNP 463566 463566 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C136%2C3%3BMQ%3D50%3BFQ%3D-282%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold977 SAMTools SNP 466408 466408 24 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C68%2C12%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D4.9e-08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold977 SAMTools SNP 468495 468495 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold977 SAMTools SNP 468569 468569 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C61%2C0%3BMQ%3D50%3BFQ%3D-211;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold977 SAMTools SNP 469630 469630 157 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C8%3BMQ%3D50%3BFQ%3D160%3BPV4%3D1%2C0.19%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:187%2C0%2C211:99 scaffold977 SAMTools SNP 469676 469676 159 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D100%3BPV4%3D1%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:189%2C0%2C127:99 scaffold977 SAMTools SNP 470090 470090 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold977 SAMTools SNP 470132 470132 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C34%2C0%3BMQ%3D50%3BFQ%3D-129;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C102%2C0:99 scaffold977 SAMTools SNP 470266 470266 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.0013%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C232:43 scaffold977 SAMTools SNP 470314 470314 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C32%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold977 SAMTools SNP 472491 472491 217 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C0%2C25%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.0075%2C0.49%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold977 SAMTools SNP 476757 476757 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D73%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C45%2C28%3BMQ%3D50%3BFQ%3D-247;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C220%2C0:99 scaffold977 SAMTools SNP 477953 477953 78 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C60%2C0:99 scaffold977 SAMTools SNP 478141 478141 37 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C24%2C0%2C25%3BMQ%3D50%3BFQ%3D40%3BPV4%3D1%2C1.8e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:67%2C0%2C244:70 scaffold977 SAMTools SNP 479178 479178 61 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D64%3BPV4%3D7.4e-06%2C2.3e-09%2C1%2C5.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C241:94 scaffold977 SAMTools SNP 480647 480647 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C8%2C10%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 480686 480686 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C12%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C182:99 scaffold977 SAMTools SNP 481237 481237 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C23%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold977 SAMTools SNP 481632 481632 6.98 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0195%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C0.028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C126:37 scaffold977 SAMTools SNP 481904 481904 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D48%3BFQ%3D156%3BPV4%3D0.47%2C0.33%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C212:99 scaffold977 SAMTools SNP 482051 482051 153 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C8%2C0%3BMQ%3D48%3BFQ%3D156%3BPV4%3D0.47%2C1%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C212:99 scaffold977 SAMTools SNP 482566 482566 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C5%2C8%3BMQ%3D49%3BFQ%3D131%3BPV4%3D0.61%2C0.068%2C0.28%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C158:99 scaffold977 SAMTools SNP 487555 487555 131 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C0.16%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold977 SAMTools SNP 487576 487576 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C47%2C5:81 scaffold977 SAMTools SNP 488510 488510 188 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D188%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C218:99 scaffold977 SAMTools SNP 490142 490142 90 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C8%2C2%2C3%3BMQ%3D50%3BFQ%3D93%3BPV4%3D0.3%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold977 SAMTools SNP 490193 490193 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D51%2C10%2C24%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.75%2C0.073%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold977 SAMTools SNP 490208 490208 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C10%2C23%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold98 SAMTools SNP 509 509 16.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold98 SAMTools SNP 542 542 16.2 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold98 SAMTools SNP 13741 13741 14.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold98 SAMTools SNP 14618 14618 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold98 SAMTools SNP 18080 18080 166 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C10%2C0%3BMQ%3D50%3BFQ%3D169%3BPV4%3D0.27%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:196%2C0%2C255:99 scaffold98 SAMTools SNP 18677 18677 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C29%2C10%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold98 SAMTools SNP 20413 20413 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold98 SAMTools SNP 20440 20440 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D62%2C9%2C33%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold98 SAMTools SNP 26185 26185 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:228%2C33%2C0:63 scaffold98 SAMTools SNP 26715 26715 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C226:69 scaffold98 SAMTools SNP 32563 32563 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 32948 32948 4.61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold98 SAMTools SNP 33581 33581 3.01 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D0.33%2C0.0093%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C83:28 scaffold98 SAMTools SNP 110110 110110 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold98 SAMTools SNP 110242 110242 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold98 SAMTools SNP 110832 110832 144 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C6%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:174%2C0%2C129:99 scaffold98 SAMTools SNP 111035 111035 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold98 SAMTools SNP 111049 111049 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0221%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold98 SAMTools SNP 111127 111127 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0005%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1.8e-07%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C255:99 scaffold98 SAMTools SNP 111836 111836 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.36%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C218:99 scaffold98 SAMTools SNP 202710 202710 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold98 SAMTools SNP 226324 226324 62 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0123%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:94%2C9%2C0:16 scaffold98 SAMTools SNP 227375 227375 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold98 SAMTools SNP 229768 229768 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 238208 238208 3.41 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold98 SAMTools SNP 244389 244389 17.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C12%2C0:20 scaffold98 SAMTools SNP 251797 251797 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C13%2C29%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold98 SAMTools SNP 254479 254479 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold98 SAMTools SNP 254728 254728 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C6%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C4e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C150:99 scaffold98 SAMTools SNP 254854 254854 89 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:122%2C27%2C0:51 scaffold98 SAMTools SNP 255560 255560 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C3%2C15%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold98 SAMTools SNP 255656 255656 120 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C19%2C2%2C12%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C8.6e-10%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C255:99 scaffold98 SAMTools SNP 255699 255699 214 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C21%2C3%2C6%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold98 SAMTools SNP 259744 259744 102 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C12%2C0:21 scaffold98 SAMTools SNP 260846 260846 99 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C225:99 scaffold98 SAMTools SNP 260867 260867 106 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold98 SAMTools SNP 260966 260966 60.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:93%2C21%2C0:39 scaffold98 SAMTools SNP 261375 261375 66 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0366%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C4%3BMQ%3D50%3BFQ%3D68.7%3BPV4%3D1%2C0%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C107:99 scaffold98 SAMTools SNP 261724 261724 91 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C4%2C5%2C0%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.54%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold98 SAMTools SNP 262014 262014 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 262297 262297 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold98 SAMTools SNP 262359 262359 69 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold98 SAMTools SNP 262654 262654 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold98 SAMTools SNP 262871 262871 33 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0052%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C235:66 scaffold98 SAMTools SNP 263746 263746 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 265518 265518 200 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C0%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold98 SAMTools SNP 265970 265970 185 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold98 SAMTools SNP 265988 265988 200 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:233%2C27%2C0:51 scaffold98 SAMTools SNP 266233 266233 162 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold98 SAMTools SNP 268245 268245 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0119%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold98 SAMTools SNP 270220 270220 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 270452 270452 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 270516 270516 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0212%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold98 SAMTools SNP 271280 271280 36 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C7.9e-07;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C247:69 scaffold98 SAMTools SNP 271287 271287 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0123%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.14%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold98 SAMTools SNP 271429 271429 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C5%3BMQ%3D50%3BFQ%3D-159;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C132%2C0:99 scaffold98 SAMTools SNP 271967 271967 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C42%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold98 SAMTools SNP 279294 279294 18.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0183%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C0.05%2C1%2C0.0049;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C230:51 scaffold98 SAMTools SNP 280230 280230 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold98 SAMTools SNP 280377 280377 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold98 SAMTools SNP 294038 294038 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.031%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C66:31 scaffold98 SAMTools SNP 297017 297017 68.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold98 SAMTools SNP 297550 297550 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D26%2C16%2C9%2C1%3BMQ%3D50%3BFQ%3D141%3BPV4%3D0.14%2C0.022%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C255:99 scaffold98 SAMTools SNP 298141 298141 10.4 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0252%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.44%2C8.3e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold98 SAMTools SNP 299846 299846 15.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0188%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold98 SAMTools SNP 300502 300502 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C33%2C16%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.34%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold98 SAMTools SNP 300556 300556 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C33%2C1%2C31%3BMQ%3D50%3BFQ%3D103%3BPV4%3D0.068%2C6.3e-08%2C1%2C0.04;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C255:99 scaffold980 SAMTools SNP 15956 15956 179 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:212%2C18%2C0:33 scaffold980 SAMTools SNP 16004 16004 44.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:77%2C21%2C0:39 scaffold980 SAMTools SNP 22789 22789 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.024%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C114:28 scaffold980 SAMTools SNP 28149 28149 155 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:188%2C18%2C0:33 scaffold980 SAMTools SNP 28152 28152 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold980 SAMTools SNP 30584 30584 9.53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold980 SAMTools SNP 33272 33272 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 33290 33290 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 33296 33296 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 33737 33737 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0136%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 34206 34206 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 34846 34846 5.29 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold980 SAMTools SNP 35180 35180 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 36227 36227 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 39432 39432 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold980 SAMTools SNP 39440 39440 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold980 SAMTools SNP 39486 39486 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C202:99 scaffold980 SAMTools SNP 39495 39495 189 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C129:99 scaffold980 SAMTools SNP 39497 39497 99 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0089%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C219:99 scaffold980 SAMTools SNP 40202 40202 104 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C0.084%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold980 SAMTools SNP 40214 40214 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold980 SAMTools SNP 40237 40237 53 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold980 SAMTools SNP 40604 40604 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 40619 40619 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 41139 41139 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 43756 43756 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold980 SAMTools SNP 46087 46087 158 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C150:99 scaffold980 SAMTools SNP 46285 46285 106 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D117%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:138%2C12%2C0:21 scaffold980 SAMTools SNP 46332 46332 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C86%3BMQ%3D50%3BFQ%3D-280;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C253%2C0:99 scaffold980 SAMTools SNP 46747 46747 48 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D97%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C83%2C0%2C14%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.00013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C200:81 scaffold980 SAMTools SNP 46907 46907 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0061%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C5.1e-06%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C74:40 scaffold980 SAMTools SNP 47882 47882 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C14%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold980 SAMTools SNP 47915 47915 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C9%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold980 SAMTools SNP 49221 49221 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 49284 49284 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 50017 50017 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold980 SAMTools SNP 51622 51622 72 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.052%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold980 SAMTools SNP 51929 51929 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C3%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold980 SAMTools SNP 51937 51937 4.77 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0153%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D16%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.032%2C0.49%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold980 SAMTools SNP 55975 55975 35 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0088%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C16%2C1%2C2%3BMQ%3D50%3BFQ%3D38%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:65%2C0%2C255:68 scaffold980 SAMTools SNP 56005 56005 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C16%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold980 SAMTools SNP 56149 56149 73 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C9%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C3.6e-18%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C51:54 scaffold980 SAMTools SNP 56161 56161 205 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C5%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:238%2C24%2C0:45 scaffold980 SAMTools SNP 56424 56424 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C21%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold980 SAMTools SNP 56848 56848 200 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5003%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C19%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:230%2C0%2C30:33 scaffold980 SAMTools SNP 58179 58179 79 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C7%2C3%3BMQ%3D50%3BFQ%3D63.9%3BPV4%3D0.07%2C1.1e-08%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C91:94 scaffold980 SAMTools SNP 58512 58512 59.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C15%2C0:27 scaffold980 SAMTools SNP 58546 58546 17.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C25%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C75%2C0:83 scaffold980 SAMTools SNP 72816 72816 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C115%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 75215 75215 147 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0242%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C1%2C8%3BMQ%3D50%3BFQ%3D150%3BPV4%3D1%2C1%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C255:99 scaffold980 SAMTools SNP 75217 75217 32 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C30%2C1%2C3%3BMQ%3D50%3BFQ%3D35%3BPV4%3D0.55%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:62%2C0%2C255:65 scaffold980 SAMTools SNP 75540 75540 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C3%2C30%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.71%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 75567 75567 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D87%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C10%2C31%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 76543 76543 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C52%2C6%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 81004 81004 128 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C5%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C0.33%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C104:99 scaffold980 SAMTools SNP 83885 83885 52 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D55%3BPV4%3D1%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold980 SAMTools SNP 83931 83931 83 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.018;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold980 SAMTools SNP 84872 84872 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C2%2C16%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 85163 85163 106 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C13%2C2%2C3%3BMQ%3D50%3BFQ%3D109%3BPV4%3D0.55%2C0.094%2C1%2C0.064;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold980 SAMTools SNP 86065 86065 150 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C22%2C11%2C1%3BMQ%3D50%3BFQ%3D153%3BPV4%3D0.018%2C1%2C0.026%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C255:99 scaffold980 SAMTools SNP 86074 86074 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C22%2C7%2C1%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.048%2C1%2C1%2C0.095;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold980 SAMTools SNP 86409 86409 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C25%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold980 SAMTools SNP 88307 88307 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C30%2C8%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.013%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 88644 88644 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C15%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold980 SAMTools SNP 88911 88911 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C13%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold980 SAMTools SNP 89885 89885 93 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C36%2C0%2C21%3BMQ%3D42%3BFQ%3D96%3BPV4%3D0.00019%2C1.9e-34%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C255:99 scaffold980 SAMTools SNP 97502 97502 40.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C18%2C0:33 scaffold980 SAMTools SNP 97525 97525 27.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C18%2C0:33 scaffold980 SAMTools SNP 99707 99707 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C45%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:174%2C163%2C0:99 scaffold980 SAMTools SNP 100130 100130 52.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:85%2C12%2C0:21 scaffold980 SAMTools SNP 100679 100679 197 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C3%2C6%3BMQ%3D50%3BFQ%3D181%3BPV4%3D1%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:227%2C0%2C208:99 scaffold980 SAMTools SNP 101943 101943 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold980 SAMTools SNP 112073 112073 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C19%2C12%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.074;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 113726 113726 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C23%2C15%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0021%2C1%2C1%2C0.0012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 113861 113861 33 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold980 SAMTools SNP 115035 115035 33 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold980 SAMTools SNP 115083 115083 168 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D171%3BPV4%3D0.015%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C211:99 scaffold980 SAMTools SNP 115780 115780 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C8%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C57:60 scaffold980 SAMTools SNP 115783 115783 27 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0084%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold980 SAMTools SNP 120174 120174 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C2%2C3%2C4%3BMQ%3D50%3BFQ%3D207%3BPV4%3D0.59%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C234:99 scaffold980 SAMTools SNP 123172 123172 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C2%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold980 SAMTools SNP 123304 123304 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C15%2C4%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.072%2C0.04%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold980 SAMTools SNP 124238 124238 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C14%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold980 SAMTools SNP 124487 124487 161 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C9%3BMQ%3D50%3BFQ%3D164%3BPV4%3D0.47%2C0.057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold980 SAMTools SNP 124816 124816 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.29%2C1.9e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C79:58 scaffold980 SAMTools SNP 130196 130196 13.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.14%2C2.2e-06%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C156:46 scaffold980 SAMTools SNP 133585 133585 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:242%2C30%2C0:57 scaffold980 SAMTools SNP 134324 134324 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold980 SAMTools SNP 134401 134401 164 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.505%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C10%3BMQ%3D50%3BFQ%3D-10.4%3BPV4%3D1%2C2.8e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C17:20 scaffold980 SAMTools SNP 157509 157509 9.97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C12%2C0:17 scaffold980 SAMTools SNP 157715 157715 101 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C5%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:134%2C63%2C0:99 scaffold980 SAMTools SNP 157831 157831 99 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C93%2C0:99 scaffold980 SAMTools SNP 157879 157879 68.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold980 SAMTools SNP 158081 158081 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 158082 158082 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 160352 160352 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 161688 161688 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0027%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 170004 170004 66 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C36%3BMQ%3D50%3BFQ%3D-135;FORMAT=GT:PL:GQ;SAMPLE=1/1:99%2C108%2C0:99 scaffold980 SAMTools SNP 174864 174864 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 175192 175192 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 176995 176995 20.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold980 SAMTools SNP 177015 177015 17.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0178%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D29%3BFQ%3D-30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:47%2C3%2C0:6 scaffold980 SAMTools SNP 198073 198073 4.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold980 SAMTools SNP 201702 201702 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold980 SAMTools SNP 310726 310726 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 311183 311183 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 311818 311818 3.01 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D4.56%3BPV4%3D0.33%2C0.024%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C41:28 scaffold980 SAMTools SNP 311862 311862 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold980 SAMTools SNP 311886 311886 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold980 SAMTools SNP 312013 312013 82 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold980 SAMTools SNP 312061 312061 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C85:88 scaffold980 SAMTools SNP 314460 314460 59.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0163%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 314510 314510 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 314753 314753 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 314754 314754 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 314814 314814 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C12%2C0:21 scaffold980 SAMTools SNP 316849 316849 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C30%2C0:51 scaffold980 SAMTools SNP 318903 318903 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 318997 318997 14.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 319009 319009 14.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 325539 325539 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C10%3BMQ%3D50%3BFQ%3D189%3BPV4%3D0.051%2C0.15%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C238:99 scaffold980 SAMTools SNP 325579 325579 191 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C3%2C4%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C0.24%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C184:99 scaffold980 SAMTools SNP 325582 325582 154 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C0%2C7%3BMQ%3D50%3BFQ%3D157%3BPV4%3D0.19%2C1%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:184%2C0%2C246:99 scaffold980 SAMTools SNP 333642 333642 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C20%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold980 SAMTools SNP 340127 340127 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 340185 340185 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 340657 340657 39 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C223:72 scaffold980 SAMTools SNP 345234 345234 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0035%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 358165 358165 143 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold980 SAMTools SNP 358576 358576 11.3 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold980 SAMTools SNP 366528 366528 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold980 SAMTools SNP 369660 369660 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.029%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C48:51 scaffold980 SAMTools SNP 370360 370360 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 370828 370828 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C41:44 scaffold980 SAMTools SNP 371002 371002 58 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C0.46%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C80:82 scaffold980 SAMTools SNP 371032 371032 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold980 SAMTools SNP 372439 372439 93 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold980 SAMTools SNP 388158 388158 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 388187 388187 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 390780 390780 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D25%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C255:55 scaffold980 SAMTools SNP 390786 390786 62 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0214%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D65%3BPV4%3D0.46%2C0.16%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:92%2C0%2C255:95 scaffold980 SAMTools SNP 391265 391265 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C8%2C2%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C165:99 scaffold980 SAMTools SNP 391286 391286 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C8%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.52%2C0.39%2C1%2C0.0065;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C113:99 scaffold980 SAMTools SNP 391299 391299 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C3%2C0%3BMQ%3D50%3BFQ%3D29%3BPV4%3D0.018%2C1.2e-06%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C158:59 scaffold980 SAMTools SNP 391314 391314 150 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.028%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C34:37 scaffold980 SAMTools SNP 391559 391559 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold980 SAMTools SNP 392204 392204 102 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C1%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.063%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold980 SAMTools SNP 392707 392707 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C2%2C11%3BMQ%3D50%3BFQ%3D128%3BPV4%3D1%2C0.071%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C155:99 scaffold980 SAMTools SNP 393218 393218 102 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C5%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold980 SAMTools SNP 393230 393230 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C1%2C9%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.16%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold980 SAMTools SNP 393239 393239 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C0%2C5%3BMQ%3D50%3BFQ%3D113%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold980 SAMTools SNP 399097 399097 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 400267 400267 27 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C6%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1.1e-08%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C171:60 scaffold980 SAMTools SNP 410803 410803 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C0%2C10%3BMQ%3D50%3BFQ%3D188%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C249:99 scaffold980 SAMTools SNP 414914 414914 109 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold980 SAMTools SNP 414959 414959 141 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C6%2C0%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.45%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C214:99 scaffold980 SAMTools SNP 416104 416104 40 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0165%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C0.26%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C138:73 scaffold980 SAMTools SNP 416221 416221 80 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D83%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold980 SAMTools SNP 416242 416242 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C6%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold980 SAMTools SNP 416626 416626 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold980 SAMTools SNP 417739 417739 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold980 SAMTools SNP 418284 418284 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C15%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.0034%2C0.085%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C171:99 scaffold980 SAMTools SNP 418507 418507 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C1%2C5%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D0.0027%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold980 SAMTools SNP 418906 418906 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D120%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C93%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 419062 419062 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C28%2C16%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 420088 420088 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 420538 420538 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C9%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold980 SAMTools SNP 420663 420663 55 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C7%2C7%2C5%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.68%2C4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold980 SAMTools SNP 420712 420712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold980 SAMTools SNP 420953 420953 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0250%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C8%2C1%2C2%3BMQ%3D50%3BFQ%3D53%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C255:83 scaffold980 SAMTools SNP 420968 420968 13.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0170%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold980 SAMTools SNP 420993 420993 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.047;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold980 SAMTools SNP 421525 421525 218 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C10%2C12%2C1%3BMQ%3D50%3BFQ%3D220%3BPV4%3D0.031%2C1%2C1%2C0.0087;FORMAT=GT:PL:GQ;SAMPLE=0/1:248%2C0%2C255:99 scaffold980 SAMTools SNP 421585 421585 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C11%2C12%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.52%2C3e-06%2C1%2C0.033;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 423368 423368 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.53%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold980 SAMTools SNP 424367 424367 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C35%2C12%3BMQ%3D50%3BFQ%3D-168;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C141%2C0:99 scaffold980 SAMTools SNP 426055 426055 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C15%2C4%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.67%2C0.012%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 426100 426100 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C4%2C13%3BMQ%3D50%3BFQ%3D159%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C186:99 scaffold980 SAMTools SNP 429350 429350 4.61 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D51%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold980 SAMTools SNP 429962 429962 24 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C15%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C6.4e-45%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C234:57 scaffold980 SAMTools SNP 431114 431114 25 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C8%2C0%2C17%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.35%2C8.6e-25%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C225:58 scaffold980 SAMTools SNP 435606 435606 97 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C77:80 scaffold980 SAMTools SNP 436305 436305 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 440174 440174 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 443438 443438 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C10%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C30%2C0:48 scaffold980 SAMTools SNP 443629 443629 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold980 SAMTools SNP 443772 443772 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold980 SAMTools SNP 443795 443795 47 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0047%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.26%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C127:80 scaffold980 SAMTools SNP 444166 444166 192 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C24%2C0:45 scaffold980 SAMTools SNP 444177 444177 23 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C3%2C3%2C0%3BMQ%3D50%3BFQ%3D26%3BPV4%3D1%2C1%2C1%2C0.011;FORMAT=GT:PL:GQ;SAMPLE=0/1:53%2C0%2C255:56 scaffold980 SAMTools SNP 444331 444331 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C14%2C5%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C179:99 scaffold980 SAMTools SNP 446979 446979 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 446983 446983 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 450602 450602 206 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C8%3BMQ%3D50%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C99%2C0:99 scaffold980 SAMTools SNP 451059 451059 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C39%2C35%3BMQ%3D50%3BFQ%3D-250;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C223%2C0:99 scaffold980 SAMTools SNP 451080 451080 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0009%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D33%2C6%2C0%2C7%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D3.2e-05%2C2.4e-09%2C1%2C0.00054;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold980 SAMTools SNP 451114 451114 25 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0244%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C12%2C1%2C3%3BMQ%3D50%3BFQ%3D28%3BPV4%3D1%2C0.0016%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold980 SAMTools SNP 451122 451122 152 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C1%2C7%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.47%2C0.035%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C197:99 scaffold980 SAMTools SNP 451264 451264 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C17%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C0.042%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 451384 451384 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C18%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold980 SAMTools SNP 451402 451402 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C22%2C13%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.6%2C0.054%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 454110 454110 170 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D80%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C11%2C18%2C1%3BMQ%3D50%3BFQ%3D173%3BPV4%3D0.27%2C0.003%2C0.042%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:200%2C0%2C255:99 scaffold980 SAMTools SNP 454227 454227 107 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C34%2C6%2C12%3BMQ%3D50%3BFQ%3D110%3BPV4%3D0.036%2C0.011%2C0.013%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:137%2C0%2C255:99 scaffold980 SAMTools SNP 455595 455595 57 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C17%2C0%2C7%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.55%2C0.17%2C1%2C0.00015;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold980 SAMTools SNP 455596 455596 162 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C9%3BMQ%3D50%3BFQ%3D165%3BPV4%3D0.082%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:192%2C0%2C255:99 scaffold980 SAMTools SNP 455695 455695 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C1%2C17%2C0%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C1%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold980 SAMTools SNP 455823 455823 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C38%2C28%3BMQ%3D50%3BFQ%3D-226;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C199%2C0:99 scaffold980 SAMTools SNP 456070 456070 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D448%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D180%2C62%2C158%2C37%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 456962 456962 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D140%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C109%2C31%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 458752 458752 12 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold980 SAMTools SNP 460664 460664 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C44%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold980 SAMTools SNP 460706 460706 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C14%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold980 SAMTools SNP 460863 460863 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D63%2C2%2C60%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.44%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 461409 461409 17.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C15%2C0:25 scaffold980 SAMTools SNP 464417 464417 46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold980 SAMTools SNP 464421 464421 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.07;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold980 SAMTools SNP 464622 464622 206 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C1%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C36%2C0:69 scaffold980 SAMTools SNP 467040 467040 6.95 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold980 SAMTools SNP 467658 467658 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.00028%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold980 SAMTools SNP 468033 468033 161 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C14%2C5%2C5%3BMQ%3D50%3BFQ%3D164%3BPV4%3D1%2C3.8e-34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C255:99 scaffold980 SAMTools SNP 468711 468711 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C8%2C9%2C1%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.22%2C0.0015%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold980 SAMTools SNP 468765 468765 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C10%2C12%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 469064 469064 97 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C30%2C1%2C5%3BMQ%3D50%3BFQ%3D100%3BPV4%3D0.5%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C255:99 scaffold980 SAMTools SNP 470530 470530 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C70%2C3%3BMQ%3D50%3BFQ%3D-211%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C184%2C0:99 scaffold980 SAMTools SNP 470560 470560 149 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C19%2C11%2C1%3BMQ%3D50%3BFQ%3D152%3BPV4%3D0.02%2C0.051%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold980 SAMTools SNP 471574 471574 66 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C6%2C11%3BMQ%3D50%3BFQ%3D45%3BPV4%3D0.069%2C5e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C72:75 scaffold980 SAMTools SNP 471944 471944 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C3%2C10%2C3%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.63%2C5.7e-10%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C246:99 scaffold980 SAMTools SNP 472057 472057 13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D78%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold980 SAMTools SNP 472151 472151 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C51%3BMQ%3D50%3BFQ%3D-196;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C169%2C0:99 scaffold980 SAMTools SNP 472180 472180 114 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C39%2C15%2C8%3BMQ%3D50%3BFQ%3D117%3BPV4%3D1.2e-06%2C1e-39%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:144%2C0%2C255:99 scaffold980 SAMTools SNP 472306 472306 21.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold980 SAMTools SNP 472977 472977 167 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C26%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:200%2C105%2C0:99 scaffold980 SAMTools SNP 473033 473033 34.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0001%3BAF1%3D0.5207%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C12%3BMQ%3D50%3BFQ%3D-16.1%3BPV4%3D1%2C1.8e-11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:64%2C0%2C11:14 scaffold980 SAMTools SNP 479145 479145 7.08 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C1%2C0:4 scaffold980 SAMTools SNP 482306 482306 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 483826 483826 106 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D80%3BPV4%3D1%2C1%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C107:99 scaffold980 SAMTools SNP 484217 484217 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold980 SAMTools SNP 488789 488789 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C22%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold980 SAMTools SNP 492138 492138 13.7 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:46%2C12%2C0:19 scaffold980 SAMTools SNP 492966 492966 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C51%2C2%3BMQ%3D50%3BFQ%3D-187;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C160%2C0:99 scaffold980 SAMTools SNP 492996 492996 60 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C4%2C4%2C1%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.51%2C1%2C1%2C0.00087;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C255:93 scaffold980 SAMTools SNP 493014 493014 49 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C9%2C0:16 scaffold980 SAMTools SNP 493101 493101 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C37%2C49%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D2.7e-05%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 494333 494333 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C7%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 494373 494373 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C9.6e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 494790 494790 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C3%2C25%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 494883 494883 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D95%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C39%2C7%2C27%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.16%2C1.3e-53%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold980 SAMTools SNP 495373 495373 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C10%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold980 SAMTools SNP 495927 495927 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C3%2C5%2C18%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0019%2C0.42%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 496107 496107 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D33%2C14%2C5%2C4%3BMQ%3D50%3BFQ%3D163%3BPV4%3D0.45%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold980 SAMTools SNP 496131 496131 174 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C12%2C5%2C4%3BMQ%3D50%3BFQ%3D177%3BPV4%3D0.44%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C255:99 scaffold980 SAMTools SNP 496455 496455 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C31%2C16%2C0%3BMQ%3D50%3BFQ%3D129%3BPV4%3D7.7e-05%2C1%2C1%2C8.4e-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C255:99 scaffold980 SAMTools SNP 496535 496535 82 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold980 SAMTools SNP 498176 498176 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 498234 498234 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D125%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D41%2C28%2C28%2C28%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 498731 498731 96 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D71%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C40%2C0%2C9%3BMQ%3D50%3BFQ%3D99%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:126%2C0%2C255:99 scaffold980 SAMTools SNP 499317 499317 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C15%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold980 SAMTools SNP 499335 499335 27 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold980 SAMTools SNP 499344 499344 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0220%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.44%2C0.0057%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold980 SAMTools SNP 499787 499787 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold980 SAMTools SNP 499790 499790 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0067%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 499802 499802 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0156%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 499817 499817 11.3 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0.23%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold980 SAMTools SNP 499995 499995 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold980 SAMTools SNP 500371 500371 121 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 500374 500374 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 500494 500494 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C4%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 500781 500781 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C72%2C18%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 501456 501456 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C2%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C18%2C0:33 scaffold980 SAMTools SNP 501463 501463 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold980 SAMTools SNP 501689 501689 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0089%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold980 SAMTools SNP 501725 501725 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold980 SAMTools SNP 501860 501860 160 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold980 SAMTools SNP 501869 501869 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C6%2C5%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.064%2C0.03%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 502363 502363 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C15%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold980 SAMTools SNP 503021 503021 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold980 SAMTools SNP 503036 503036 210 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold980 SAMTools SNP 504850 504850 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D220%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C181%2C22%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 505963 505963 203 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C38%2C7%2C11%3BMQ%3D50%3BFQ%3D206%3BPV4%3D0.6%2C0.016%2C1%2C0.0021;FORMAT=GT:PL:GQ;SAMPLE=0/1:233%2C0%2C255:99 scaffold980 SAMTools SNP 506988 506988 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C13%2C15%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0047%2C0.081%2C1%2C0.088;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 507781 507781 66 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C20%2C0%2C5%3BMQ%3D50%3BFQ%3D69%3BPV4%3D0.56%2C1%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:96%2C0%2C255:99 scaffold980 SAMTools SNP 509558 509558 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C7%2C16%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 509593 509593 8.65 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold980 SAMTools SNP 511694 511694 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D209%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C81%2C21%2C78%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C8.3e-38%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 517978 517978 3.55 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C3%2C0:4 scaffold980 SAMTools SNP 520358 520358 10.4 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold980 SAMTools SNP 520614 520614 20.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 525632 525632 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 525633 525633 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 525699 525699 8.65 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0252%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold980 SAMTools SNP 526279 526279 6.95 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0241%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C9%2C0:10 scaffold980 SAMTools SNP 531249 531249 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold980 SAMTools SNP 536361 536361 47.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C12%2C0:21 scaffold980 SAMTools SNP 536435 536435 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold980 SAMTools SNP 536477 536477 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C16%2C3%3BMQ%3D50%3BFQ%3D130%3BPV4%3D0.54%2C0.064%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C157:99 scaffold980 SAMTools SNP 536722 536722 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C4%2C13%2C0%3BMQ%3D50%3BFQ%3D192%3BPV4%3D0.13%2C1%2C1%2C0.073;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C255:99 scaffold980 SAMTools SNP 537288 537288 5.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.48%2C1%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold980 SAMTools SNP 537291 537291 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0188%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D5%2C15%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.48%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold980 SAMTools SNP 537324 537324 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold980 SAMTools SNP 537354 537354 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0207%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold980 SAMTools SNP 537777 537777 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold980 SAMTools SNP 537780 537780 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold980 SAMTools SNP 537997 537997 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C6%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold980 SAMTools SNP 538030 538030 227 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C26%2C3%3BMQ%3D50%3BFQ%3D-27%3BPV4%3D1%2C0.27%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C0%2C0:3 scaffold980 SAMTools SNP 538340 538340 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C27%3BMQ%3D50%3BFQ%3D-147;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C120%2C0:99 scaffold980 SAMTools SNP 538352 538352 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C27%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold980 SAMTools SNP 538647 538647 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold980 SAMTools SNP 538659 538659 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0106%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold980 SAMTools SNP 539189 539189 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C19%2C2%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold980 SAMTools SNP 539605 539605 129 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C22%2C15%2C0%3BMQ%3D50%3BFQ%3D132%3BPV4%3D0.0016%2C0.14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C255:99 scaffold980 SAMTools SNP 539628 539628 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C18%2C13%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D0.0054%2C0.02%2C1%2C0.15;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C255:99 scaffold980 SAMTools SNP 539655 539655 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C13%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold980 SAMTools SNP 539703 539703 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D79%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C32%2C16%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.095%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 540273 540273 109 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C21%2C8%2C1%3BMQ%3D50%3BFQ%3D112%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:139%2C0%2C255:99 scaffold980 SAMTools SNP 540282 540282 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C10%2C5%2C14%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00015%2C1%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 540297 540297 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D172%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D74%2C13%2C73%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C6.3e-47%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 540797 540797 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D287%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C272%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 540833 540833 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C17%2C0%2C4%3BMQ%3D50%3BFQ%3D17.1%3BPV4%3D0.29%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C255:47 scaffold980 SAMTools SNP 540836 540836 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C12%3BMQ%3D50%3BFQ%3D-90;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C63%2C0:99 scaffold980 SAMTools SNP 541211 541211 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold980 SAMTools SNP 541252 541252 121 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold980 SAMTools SNP 541276 541276 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 541297 541297 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold980 SAMTools SNP 542023 542023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold980 SAMTools SNP 542056 542056 30 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0074%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.45%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold980 SAMTools SNP 542089 542089 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C16%2C1%3BMQ%3D50%3BFQ%3D-31%3BPV4%3D0.11%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C4%2C0:7 scaffold980 SAMTools SNP 543000 543000 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 543396 543396 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D137%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C78%2C29%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 543468 543468 51 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C41%2C9%2C37%3BMQ%3D50%3BFQ%3D54%3BPV4%3D0.19%2C4.1e-73%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:81%2C0%2C255:84 scaffold980 SAMTools SNP 544052 544052 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C55%2C27%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold980 SAMTools SNP 544100 544100 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C3%3BMQ%3D50%3BFQ%3D-96;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C69%2C0:99 scaffold980 SAMTools SNP 544118 544118 57 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D86%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C26%2C20%2C12%3BMQ%3D50%3BFQ%3D60%3BPV4%3D0.38%2C5.4e-57%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:87%2C0%2C255:90 scaffold980 SAMTools SNP 544181 544181 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D108%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C50%2C6%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 544187 544187 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D109%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C38%2C10%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.29%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 547840 547840 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold980 SAMTools SNP 549929 549929 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C36%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold980 SAMTools SNP 552059 552059 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D84%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C9%2C22%2C10%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.6%2C1%2C0.031%2C4e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 552077 552077 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C26%2C53%3BMQ%3D50%3BFQ%3D-262;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C235%2C0:99 scaffold980 SAMTools SNP 552219 552219 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C80%2C22%2C12%3BMQ%3D49%3BFQ%3D225%3BPV4%3D4.1e-07%2C2.2e-10%2C1%2C0.046;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 552255 552255 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D124%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C21%2C103%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold980 SAMTools SNP 552638 552638 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C18%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold980 SAMTools SNP 553039 553039 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D198%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D64%2C15%2C88%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.43%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 553084 553084 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D191%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D83%2C19%2C78%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C4.8e-12%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 553114 553114 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D187%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C75%2C12%2C25%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.84%2C1%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 553430 553430 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C86%2C11%2C110%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C1%2C1%2C1.2e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 553669 553669 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C56%2C10%2C52%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.27%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold980 SAMTools SNP 554102 554102 96.5 . . REF=T;ALT=C,G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:147%2C30%2C18%2C124%2C0%2C121:21 scaffold980 SAMTools SNP 562167 562167 172 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:202%2C0%2C129:99 scaffold980 SAMTools SNP 562624 562624 6.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C130:36 scaffold980 SAMTools SNP 562644 562644 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold980 SAMTools SNP 565520 565520 10.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C6%2C0:8 scaffold980 SAMTools SNP 570833 570833 120 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C10%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C39%2C0:75 scaffold980 SAMTools SNP 570959 570959 39.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C15%2C0:27 scaffold980 SAMTools SNP 574086 574086 6.98 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0178%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D43%3BFQ%3D8.67%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C42:37 scaffold983 SAMTools SNP 7920 7920 30 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.17%2C0.013%2C1%2C0.0017;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C162:63 scaffold983 SAMTools SNP 8506 8506 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold983 SAMTools SNP 8515 8515 131 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0000%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C5%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.22%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C32:35 scaffold983 SAMTools SNP 8553 8553 14.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold983 SAMTools SNP 85158 85158 8.65 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:38%2C3%2C0:5 scaffold983 SAMTools SNP 86079 86079 218 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C18%2C0:33 scaffold983 SAMTools SNP 88218 88218 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D2%2C0%2C0%2C3%3BMQ%3D39%3BFQ%3D-30%3BPV4%3D0.1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=1/1:116%2C3%2C0:6 scaffold983 SAMTools SNP 109981 109981 3.54 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.31%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C103:30 scaffold983 SAMTools SNP 160194 160194 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0.41%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C69:33 scaffold983 SAMTools SNP 160203 160203 5.46 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold983 SAMTools SNP 185269 185269 20.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0210%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D35%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:52%2C6%2C0:10 scaffold983 SAMTools SNP 185314 185314 9.52 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0184%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C2%2C0%3BMQ%3D45%3BFQ%3D12.3%3BPV4%3D1%2C0.22%2C0.14%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C112:41 scaffold983 SAMTools SNP 202052 202052 38 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C13%2C4%2C0%3BMQ%3D50%3BFQ%3D41%3BPV4%3D0.13%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:68%2C0%2C255:71 scaffold983 SAMTools SNP 241031 241031 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold983 SAMTools SNP 243889 243889 9.49 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C9%2C0:12 scaffold983 SAMTools SNP 267369 267369 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold983 SAMTools SNP 270064 270064 3.41 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold983 SAMTools SNP 270933 270933 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C195:31 scaffold983 SAMTools SNP 271590 271590 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D806%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D423%2C0%2C383%2C0%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 272345 272345 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold983 SAMTools SNP 272380 272380 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold983 SAMTools SNP 272803 272803 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1481%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C756%2C18%2C682%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.6e-244%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 277480 277480 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C3%2C10%3BMQ%3D50%3BFQ%3D146%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C173:99 scaffold983 SAMTools SNP 277795 277795 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.17%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C66:69 scaffold983 SAMTools SNP 280083 280083 61 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.19%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold983 SAMTools SNP 295568 295568 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D111%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C34%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 305206 305206 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D144%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D35%2C31%2C23%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C0.043%2C1%2C0.015;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 305722 305722 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D44%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C7.1e-15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C234:99 scaffold983 SAMTools SNP 317728 317728 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold983 SAMTools SNP 330392 330392 55 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C255:88 scaffold983 SAMTools SNP 331351 331351 160 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C16%2C1%2C6%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C255:99 scaffold983 SAMTools SNP 331355 331355 149 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C20%2C1%2C6%3BMQ%3D50%3BFQ%3D152%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:179%2C0%2C255:99 scaffold983 SAMTools SNP 332590 332590 3.01 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0217%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C2%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C1%2C1%2C4.9e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold983 SAMTools SNP 334968 334968 50 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0138%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D52.4%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C88:82 scaffold983 SAMTools SNP 336401 336401 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C12%2C12%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 336683 336683 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C11%2C13%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold983 SAMTools SNP 337611 337611 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold983 SAMTools SNP 337684 337684 219 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C0%2C29%2C0%3BMQ%3D50%3BFQ%3D210%3BPV4%3D1%2C0.072%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C237:99 scaffold983 SAMTools SNP 340466 340466 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0414%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold983 SAMTools SNP 340635 340635 16.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold983 SAMTools SNP 340658 340658 3.54 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0215%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D19%2C2%2C1%2C1%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D0.25%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C255:30 scaffold983 SAMTools SNP 341252 341252 41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.23%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C184:74 scaffold983 SAMTools SNP 349291 349291 14.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-3.57%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C26:29 scaffold983 SAMTools SNP 355977 355977 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold986 SAMTools SNP 3239 3239 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold986 SAMTools SNP 3348 3348 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold986 SAMTools SNP 20984 20984 7.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold986 SAMTools SNP 49965 49965 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0050%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold986 SAMTools SNP 54503 54503 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold986 SAMTools SNP 54523 54523 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold986 SAMTools SNP 227215 227215 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:41%2C3%2C0:5 scaffold986 SAMTools SNP 230000 230000 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0052%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C3%2C0:6 scaffold986 SAMTools SNP 230531 230531 185 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C3%3BMQ%3D41%3BFQ%3D57%3BPV4%3D0.53%2C0.27%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:215%2C0%2C84:87 scaffold986 SAMTools SNP 230558 230558 186 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C11%2C2%3BMQ%3D43%3BFQ%3D60%3BPV4%3D1%2C1%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C87:90 scaffold986 SAMTools SNP 231138 231138 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D47%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold986 SAMTools SNP 231199 231199 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold986 SAMTools SNP 232747 232747 8.22 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C12%2C0:15 scaffold986 SAMTools SNP 233702 233702 26.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0238%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:59%2C12%2C0:21 scaffold986 SAMTools SNP 234011 234011 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C3%2C0:6 scaffold987 SAMTools SNP 7447 7447 93 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 7452 7452 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 8139 8139 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 9482 9482 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 9930 9930 32.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0330%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:64%2C6%2C0:10 scaffold987 SAMTools SNP 32820 32820 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold987 SAMTools SNP 33075 33075 69 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0076%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C180:99 scaffold987 SAMTools SNP 33081 33081 104 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold987 SAMTools SNP 33090 33090 190 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold987 SAMTools SNP 38267 38267 4.94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D32%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C15%2C0:15 scaffold987 SAMTools SNP 44514 44514 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C4%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold987 SAMTools SNP 44703 44703 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 45814 45814 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold987 SAMTools SNP 46058 46058 8.64 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0238%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold987 SAMTools SNP 47413 47413 53 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.33%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold987 SAMTools SNP 86188 86188 4.61 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:34%2C6%2C0:5 scaffold987 SAMTools SNP 86248 86248 5.29 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold987 SAMTools SNP 95359 95359 109 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold987 SAMTools SNP 96128 96128 59.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 102376 102376 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0013%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold987 SAMTools SNP 102499 102499 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold987 SAMTools SNP 107288 107288 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0000%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D4%2C12%2C0%2C3%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.12%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C255:28 scaffold987 SAMTools SNP 107291 107291 44 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C11%2C0%2C7%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.27%2C0.0057%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C255:77 scaffold987 SAMTools SNP 107292 107292 178 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C1%2C7%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.62%2C0.063%2C1%2C0.0076;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold987 SAMTools SNP 120901 120901 7.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold987 SAMTools SNP 122288 122288 13.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold987 SAMTools SNP 123639 123639 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C19%2C2%2C36%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.025%2C1%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 133893 133893 15.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C20%2C6%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.02%2C0.0008%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold987 SAMTools SNP 134185 134185 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C3%2C0:5 scaffold987 SAMTools SNP 137493 137493 6.17 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C9%2C0:10 scaffold987 SAMTools SNP 143349 143349 10.4 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:40%2C3%2C0:5 scaffold987 SAMTools SNP 156986 156986 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C10%2C19%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 157472 157472 3.54 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D118%3BVDB%3D0.0004%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C6.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C102:30 scaffold987 SAMTools SNP 157908 157908 15.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C7%2C2%2C0%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.47%2C1%2C1%2C0.037;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold987 SAMTools SNP 159212 159212 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.41%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C216:99 scaffold987 SAMTools SNP 197271 197271 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 198748 198748 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 198796 198796 48.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0072%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold987 SAMTools SNP 206227 206227 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0232%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 206458 206458 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 206480 206480 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0151%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 208451 208451 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold987 SAMTools SNP 208464 208464 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 211000 211000 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 211047 211047 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 240022 240022 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D414%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C381%2C30%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold987 SAMTools SNP 241207 241207 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D130%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C18%2C43%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 242466 242466 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D93%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C34%2C28%2C26%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00014%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 242502 242502 33 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.44%2C0.0011%2C1%2C0.0008;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold987 SAMTools SNP 244418 244418 82 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C0%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C45%2C0:87 scaffold987 SAMTools SNP 244443 244443 144 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold987 SAMTools SNP 245464 245464 165 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C2%2C4%3BMQ%3D50%3BFQ%3D168%3BPV4%3D1%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C255:99 scaffold987 SAMTools SNP 245939 245939 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C48%2C11%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold987 SAMTools SNP 246219 246219 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C2%2C53%2C4%3BMQ%3D50%3BFQ%3D-110%3BPV4%3D0.0088%2C0.39%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C83%2C0:99 scaffold987 SAMTools SNP 246315 246315 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D69%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C51%3BMQ%3D50%3BFQ%3D-190;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C163%2C0:99 scaffold987 SAMTools SNP 246913 246913 78 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:110%2C9%2C0:16 scaffold987 SAMTools SNP 246919 246919 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:244%2C24%2C0:45 scaffold987 SAMTools SNP 246970 246970 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C11%2C4%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.32%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 247506 247506 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0089%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.006%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C161:36 scaffold987 SAMTools SNP 247518 247518 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0315%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C193:99 scaffold987 SAMTools SNP 248173 248173 167 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.63%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold987 SAMTools SNP 248184 248184 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C7%3BMQ%3D50%3BFQ%3D-63;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C36%2C0:69 scaffold987 SAMTools SNP 248695 248695 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C5%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold987 SAMTools SNP 248712 248712 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C4%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold987 SAMTools SNP 249479 249479 209 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C5%2C2%2C6%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.18%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:239%2C0%2C255:99 scaffold987 SAMTools SNP 249494 249494 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C8%2C5%3BMQ%3D50%3BFQ%3D215%3BPV4%3D0.18%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C242:99 scaffold987 SAMTools SNP 250877 250877 215 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D218%3BPV4%3D0.35%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:245%2C0%2C255:99 scaffold987 SAMTools SNP 250898 250898 217 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C10%2C1%3BMQ%3D50%3BFQ%3D219%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold987 SAMTools SNP 250949 250949 102 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C12%2C1%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.62%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C255:99 scaffold987 SAMTools SNP 251012 251012 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C23%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 251158 251158 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C11%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 251173 251173 222 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C4%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold987 SAMTools SNP 251230 251230 15.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D53%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C23%2C0%2C10%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.0086%2C2.9e-19%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold987 SAMTools SNP 251310 251310 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C18%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C57%2C0:99 scaffold987 SAMTools SNP 251717 251717 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 251755 251755 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.11%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold987 SAMTools SNP 251966 251966 98.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0281%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C12%2C0:21 scaffold987 SAMTools SNP 252601 252601 121 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold987 SAMTools SNP 252606 252606 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 252661 252661 143 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold987 SAMTools SNP 252959 252959 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold987 SAMTools SNP 252965 252965 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 252980 252980 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 253291 253291 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold987 SAMTools SNP 253548 253548 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 253916 253916 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 255070 255070 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 255079 255079 53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0134%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C23:26 scaffold987 SAMTools SNP 255444 255444 91 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C2%3BMQ%3D50%3BFQ%3D93.9%3BPV4%3D0.43%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C136:99 scaffold987 SAMTools SNP 255451 255451 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold987 SAMTools SNP 255511 255511 72 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0011%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.17%2C0.25%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold987 SAMTools SNP 255532 255532 78.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:111%2C18%2C0:33 scaffold987 SAMTools SNP 255599 255599 183 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold987 SAMTools SNP 255864 255864 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C7%3BMQ%3D50%3BFQ%3D-117;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C90%2C0:99 scaffold987 SAMTools SNP 255879 255879 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D15%2C2%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.14%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 256622 256622 36 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C0%2C5%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C0.0035%2C1%2C0.093;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold987 SAMTools SNP 256932 256932 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C1%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.59%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 257167 257167 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C18%2C3%2C22%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 257549 257549 11.3 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D12.5%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C44:42 scaffold987 SAMTools SNP 257550 257550 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D12.8%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C45:42 scaffold987 SAMTools SNP 258052 258052 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold987 SAMTools SNP 258468 258468 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.17%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold987 SAMTools SNP 258533 258533 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C2%2C7%2C3%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.62%2C1%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 261462 261462 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C8%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 261483 261483 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C4%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 261919 261919 151 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold987 SAMTools SNP 262066 262066 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0248%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D0.1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold987 SAMTools SNP 262127 262127 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold987 SAMTools SNP 262141 262141 68.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold987 SAMTools SNP 262445 262445 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C7%2C3%3BMQ%3D50%3BFQ%3D115%3BPV4%3D0.51%2C0.43%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C142:99 scaffold987 SAMTools SNP 264469 264469 20 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D23%3BPV4%3D1%2C1%2C1%2C0.0061;FORMAT=GT:PL:GQ;SAMPLE=0/1:50%2C0%2C255:53 scaffold987 SAMTools SNP 264537 264537 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold987 SAMTools SNP 266371 266371 13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold987 SAMTools SNP 267108 267108 96.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:129%2C18%2C0:33 scaffold987 SAMTools SNP 267139 267139 94 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D82.8%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C110:99 scaffold987 SAMTools SNP 267625 267625 77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold987 SAMTools SNP 267646 267646 74 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D0.2%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C195:99 scaffold987 SAMTools SNP 267715 267715 59 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C1%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:92%2C27%2C0:51 scaffold987 SAMTools SNP 268012 268012 94 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C12%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C39%2C0:75 scaffold987 SAMTools SNP 268588 268588 90 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C3%2C3%2C1%3BMQ%3D50%3BFQ%3D93%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:120%2C0%2C255:99 scaffold987 SAMTools SNP 269675 269675 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C6%2C2%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.046%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 272918 272918 194 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C6%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C99:99 scaffold987 SAMTools SNP 286625 286625 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.053%2C1%2C0.0055;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold987 SAMTools SNP 294578 294578 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 295868 295868 4.77 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.98%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C83:33 scaffold987 SAMTools SNP 296399 296399 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C3%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold987 SAMTools SNP 297425 297425 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold987 SAMTools SNP 298401 298401 192 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold987 SAMTools SNP 298467 298467 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C1%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:239%2C48%2C0:93 scaffold987 SAMTools SNP 298533 298533 25.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C6%2C0:10 scaffold987 SAMTools SNP 298539 298539 5.46 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.027%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C151:34 scaffold987 SAMTools SNP 299234 299234 57.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0284%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C12%2C0:21 scaffold987 SAMTools SNP 299303 299303 110 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold987 SAMTools SNP 299678 299678 58 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0136%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C88:88 scaffold987 SAMTools SNP 299690 299690 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 299837 299837 148 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C17%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C7.6e-24%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:178%2C0%2C208:99 scaffold987 SAMTools SNP 299918 299918 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C0.39%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 300441 300441 184 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C0%2C11%3BMQ%3D50%3BFQ%3D187%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:214%2C0%2C255:99 scaffold987 SAMTools SNP 300469 300469 89 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C0.43%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C255:99 scaffold987 SAMTools SNP 300486 300486 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 300519 300519 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold987 SAMTools SNP 301090 301090 8.64 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold987 SAMTools SNP 301096 301096 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold987 SAMTools SNP 301114 301114 53 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D0.33%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C40:43 scaffold987 SAMTools SNP 301189 301189 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0237%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.092%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C129:40 scaffold987 SAMTools SNP 301243 301243 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C3%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold987 SAMTools SNP 301799 301799 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 303502 303502 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold987 SAMTools SNP 303550 303550 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C5%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold987 SAMTools SNP 303916 303916 6.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold987 SAMTools SNP 304015 304015 100 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0174%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.43%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C38:41 scaffold987 SAMTools SNP 304045 304045 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0167%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.29%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C35:38 scaffold987 SAMTools SNP 304448 304448 18.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C3%2C0:6 scaffold987 SAMTools SNP 304529 304529 39.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C2%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C21%2C0:39 scaffold987 SAMTools SNP 305202 305202 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 305685 305685 214 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:247%2C18%2C0:33 scaffold987 SAMTools SNP 305943 305943 7.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C126:39 scaffold987 SAMTools SNP 305945 305945 68.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0195%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold987 SAMTools SNP 306100 306100 3.01 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4997%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D4.77%3BPV4%3D1%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C91:28 scaffold987 SAMTools SNP 306105 306105 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D0.33%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C69:34 scaffold987 SAMTools SNP 309862 309862 22.3 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold987 SAMTools SNP 311904 311904 6.02 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0192%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:36%2C6%2C0:6 scaffold987 SAMTools SNP 311988 311988 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold987 SAMTools SNP 312398 312398 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 315942 315942 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 315954 315954 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 316396 316396 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 316420 316420 99.5 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0306%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:132%2C12%2C0:21 scaffold987 SAMTools SNP 316507 316507 6.2 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C0.051;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold987 SAMTools SNP 316531 316531 151 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold987 SAMTools SNP 317822 317822 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0079%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 317858 317858 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 318860 318860 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold987 SAMTools SNP 319189 319189 165 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C2%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:195%2C0%2C119:99 scaffold987 SAMTools SNP 319291 319291 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 319300 319300 210 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold987 SAMTools SNP 319516 319516 216 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C11%2C0%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C33%2C0:63 scaffold987 SAMTools SNP 320575 320575 83 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D86%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold987 SAMTools SNP 320656 320656 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold987 SAMTools SNP 320668 320668 46 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0065%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.1%2C0.14%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C112:79 scaffold987 SAMTools SNP 320695 320695 185 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C3%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C15%2C0:27 scaffold987 SAMTools SNP 320732 320732 216 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C3%2C4%3BMQ%3D50%3BFQ%3D215%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C245:99 scaffold987 SAMTools SNP 320885 320885 33 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0212%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.47%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold987 SAMTools SNP 320886 320886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold987 SAMTools SNP 320905 320905 13.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0144%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.083%2C1%2C0.056;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C151:46 scaffold987 SAMTools SNP 320909 320909 68 . . REF=T;ALT=G,C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:133%2C42%2C33%2C102%2C0%2C96:16 scaffold987 SAMTools SNP 322076 322076 8.64 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold987 SAMTools SNP 322083 322083 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0193%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 323007 323007 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold987 SAMTools SNP 323010 323010 10.4 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0270%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C9%2C1%2C1%3BMQ%3D50%3BFQ%3D13.2%3BPV4%3D1%2C1%2C1%2C0.083;FORMAT=GT:PL:GQ;SAMPLE=0/1:40%2C0%2C255:42 scaffold987 SAMTools SNP 323097 323097 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold987 SAMTools SNP 323100 323100 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C6%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold987 SAMTools SNP 323281 323281 58 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C3%2C4%2C0%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.49%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold987 SAMTools SNP 323362 323362 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold987 SAMTools SNP 323407 323407 133 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C14%2C2%2C3%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.14%2C0.23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C255:99 scaffold987 SAMTools SNP 323677 323677 71 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C1%3BMQ%3D50%3BFQ%3D74%3BPV4%3D0.093%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:101%2C0%2C255:99 scaffold987 SAMTools SNP 324248 324248 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C1%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold987 SAMTools SNP 324278 324278 124 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D127%3BPV4%3D0.45%2C0.34%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:154%2C0%2C165:99 scaffold987 SAMTools SNP 324698 324698 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold987 SAMTools SNP 324713 324713 68 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D71%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:98%2C0%2C255:99 scaffold987 SAMTools SNP 324723 324723 177 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C4%2C7%2C1%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C0.12;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold987 SAMTools SNP 325176 325176 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C84%2C0:99 scaffold987 SAMTools SNP 325200 325200 113 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C11%2C3%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.35%2C0.00043%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold987 SAMTools SNP 325305 325305 139 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C7%2C2%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.004%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C255:99 scaffold987 SAMTools SNP 325326 325326 39 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0155%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C2%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.041%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C205:72 scaffold987 SAMTools SNP 325802 325802 120 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C5%3BMQ%3D50%3BFQ%3D123%3BPV4%3D1%2C1%2C1%2C0.067;FORMAT=GT:PL:GQ;SAMPLE=0/1:150%2C0%2C188:99 scaffold987 SAMTools SNP 325910 325910 59.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0198%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 325922 325922 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 326422 326422 105 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0118%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold987 SAMTools SNP 327007 327007 14.2 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 327027 327027 115 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0019%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D118%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:145%2C0%2C205:99 scaffold987 SAMTools SNP 327804 327804 139 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D142%3BPV4%3D1%2C0.44%2C1%2C2.3e-05;FORMAT=GT:PL:GQ;SAMPLE=0/1:169%2C0%2C236:99 scaffold987 SAMTools SNP 327810 327810 78 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.00027;FORMAT=GT:PL:GQ;SAMPLE=0/1:108%2C0%2C230:99 scaffold987 SAMTools SNP 327855 327855 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C20%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold987 SAMTools SNP 327954 327954 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C1%2C6%2C6%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.0057%2C7.9e-26%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold987 SAMTools SNP 329125 329125 226 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0335%3BAF1%3D0.5939%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C13%3BMQ%3D50%3BFQ%3D-22%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C5:8 scaffold987 SAMTools SNP 329158 329158 98.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C21%2C0:39 scaffold987 SAMTools SNP 329260 329260 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold987 SAMTools SNP 329599 329599 190 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold987 SAMTools SNP 329760 329760 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C9%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold987 SAMTools SNP 330018 330018 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C11%3BMQ%3D50%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold987 SAMTools SNP 330192 330192 82 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C1%3BMQ%3D46%3BFQ%3D41%3BPV4%3D0.4%2C1%2C0.27%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C68:71 scaffold987 SAMTools SNP 330213 330213 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C0%2C4%3BMQ%3D47%3BFQ%3D102%3BPV4%3D0.076%2C0.4%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C164:99 scaffold987 SAMTools SNP 330225 330225 150 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C4%2C2%3BMQ%3D47%3BFQ%3D102%3BPV4%3D0.076%2C0.4%2C0.22%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:180%2C0%2C129:99 scaffold987 SAMTools SNP 330384 330384 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0207%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 331256 331256 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold987 SAMTools SNP 336845 336845 8.64 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.016%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold987 SAMTools SNP 336858 336858 59.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 340432 340432 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 340710 340710 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0165%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 341005 341005 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C21%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold987 SAMTools SNP 341891 341891 95 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C10%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:128%2C33%2C0:63 scaffold987 SAMTools SNP 342478 342478 21.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D34%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10 scaffold987 SAMTools SNP 343044 343044 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C12%3BMQ%3D50%3BFQ%3D-123;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C96%2C0:99 scaffold987 SAMTools SNP 343758 343758 75 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D78%3BPV4%3D0.53%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:105%2C0%2C255:99 scaffold987 SAMTools SNP 343800 343800 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C4%2C0%3BMQ%3D50%3BFQ%3D97%3BPV4%3D0.081%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C255:99 scaffold987 SAMTools SNP 343831 343831 98 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:131%2C45%2C0:87 scaffold987 SAMTools SNP 345866 345866 109 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:141%2C9%2C0:16 scaffold987 SAMTools SNP 345886 345886 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold987 SAMTools SNP 347216 347216 158 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0013%3BAF1%3D0.5002%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C4%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C0.07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:188%2C0%2C32:35 scaffold987 SAMTools SNP 347237 347237 117 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C5%2C5%2C0%3BMQ%3D50%3BFQ%3D120%3BPV4%3D0.075%2C1%2C1%2C0.032;FORMAT=GT:PL:GQ;SAMPLE=0/1:147%2C0%2C255:99 scaffold987 SAMTools SNP 347258 347258 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C5%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold987 SAMTools SNP 347954 347954 99 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C8%2C0%2C5%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.11%2C0.43%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C255:99 scaffold987 SAMTools SNP 348452 348452 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 349108 349108 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 349119 349119 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 349186 349186 18 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0076%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C9%2C0:15 scaffold987 SAMTools SNP 349396 349396 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0284%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D23.5%3BPV4%3D0.1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C60:53 scaffold987 SAMTools SNP 349516 349516 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C17%2C2%3BMQ%3D50%3BFQ%3D-50%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C23%2C0:43 scaffold987 SAMTools SNP 349868 349868 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold987 SAMTools SNP 349967 349967 30 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D33%3BPV4%3D0.54%2C0.01%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:60%2C0%2C255:63 scaffold987 SAMTools SNP 350006 350006 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C4%2C5%3BMQ%3D50%3BFQ%3D196%3BPV4%3D0.29%2C0.16%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C223:99 scaffold987 SAMTools SNP 350013 350013 91 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C0%2C4%3BMQ%3D50%3BFQ%3D94%3BPV4%3D0.23%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:121%2C0%2C255:99 scaffold987 SAMTools SNP 350282 350282 102 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0145%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C4%3BMQ%3D50%3BFQ%3D105%3BPV4%3D0.048%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold987 SAMTools SNP 350285 350285 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.00086;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold987 SAMTools SNP 350327 350327 134 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:167%2C18%2C0:33 scaffold987 SAMTools SNP 350396 350396 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 350408 350408 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold987 SAMTools SNP 350652 350652 113 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C69:72 scaffold987 SAMTools SNP 350667 350667 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0193%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.17%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C160:60 scaffold987 SAMTools SNP 350694 350694 11.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C1%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold987 SAMTools SNP 350736 350736 72 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0192%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D75%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C176:99 scaffold987 SAMTools SNP 351219 351219 196 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C6%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C66:69 scaffold987 SAMTools SNP 351493 351493 193 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0009%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C1%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C26:29 scaffold987 SAMTools SNP 351532 351532 194 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C0%2C9%2C1%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C142:99 scaffold987 SAMTools SNP 351580 351580 182 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C7%3BMQ%3D50%3BFQ%3D143%3BPV4%3D0.032%2C0.066%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C170:99 scaffold987 SAMTools SNP 351742 351742 105 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C0%2C5%3BMQ%3D50%3BFQ%3D108%3BPV4%3D0.28%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold987 SAMTools SNP 351772 351772 27 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D30%2C2%2C0%2C4%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.00025%2C0.38%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold987 SAMTools SNP 352331 352331 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0207%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D13%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.11%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold987 SAMTools SNP 353611 353611 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0324%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold987 SAMTools SNP 353612 353612 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.43%2C0.25%2C1%2C0.036;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C175:43 scaffold987 SAMTools SNP 354218 354218 153 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D46%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C5%2C11%2C0%3BMQ%3D50%3BFQ%3D156%3BPV4%3D0.3%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:183%2C0%2C255:99 scaffold987 SAMTools SNP 354245 354245 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D92%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C81%2C11%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold987 SAMTools SNP 354873 354873 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D112%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D42%2C2%2C56%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.045%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 354948 354948 31 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C55%2C4%2C3%3BMQ%3D50%3BFQ%3D34%3BPV4%3D0.014%2C0.0043%2C1%2C2.3e-08;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold987 SAMTools SNP 355597 355597 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C11%3BMQ%3D50%3BFQ%3D-114;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C87%2C0:99 scaffold987 SAMTools SNP 355660 355660 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C7%2C3%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.4%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 355672 355672 223 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C7%2C1%2C9%3BMQ%3D50%3BFQ%3D224%3BPV4%3D0.58%2C1%2C1%2C0.32;FORMAT=GT:PL:GQ;SAMPLE=0/1:253%2C0%2C255:99 scaffold987 SAMTools SNP 355678 355678 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C10%2C2%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.57%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 355964 355964 177 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold987 SAMTools SNP 355976 355976 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold987 SAMTools SNP 356447 356447 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0449%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C7%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.0068%2C0.31%2C1%2C0.027;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold987 SAMTools SNP 356464 356464 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C4%2C9%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.035%2C0.12%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C236:99 scaffold987 SAMTools SNP 356470 356470 178 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C17%2C0%2C14%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.0075%2C1%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold987 SAMTools SNP 361232 361232 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 382273 382273 145 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:178%2C18%2C0:33 scaffold987 SAMTools SNP 382909 382909 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold987 SAMTools SNP 382948 382948 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold987 SAMTools SNP 387023 387023 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold987 SAMTools SNP 403575 403575 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold987 SAMTools SNP 403605 403605 55 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0205%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D58%3BPV4%3D0.4%2C1%2C1%2C0.024;FORMAT=GT:PL:GQ;SAMPLE=0/1:85%2C0%2C112:88 scaffold987 SAMTools SNP 404113 404113 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C3%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold987 SAMTools SNP 405327 405327 63 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C0.25%2C1%2C0.0084;FORMAT=GT:PL:GQ;SAMPLE=0/1:93%2C0%2C150:96 scaffold987 SAMTools SNP 405331 405331 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C2%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C0.029%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C168:39 scaffold987 SAMTools SNP 409108 409108 16.6 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:49%2C12%2C0:20 scaffold987 SAMTools SNP 409117 409117 67.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C18%2C0:33 scaffold987 SAMTools SNP 409534 409534 6.98 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D7%2C5%2C2%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D1%2C2.2e-11%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:36%2C0%2C255:37 scaffold987 SAMTools SNP 409572 409572 24.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:57%2C12%2C0:21 scaffold987 SAMTools SNP 409654 409654 110 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C3%2C2%3BMQ%3D50%3BFQ%3D113%3BPV4%3D0.29%2C2.9e-10%2C1%2C0.061;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C255:99 scaffold987 SAMTools SNP 409669 409669 125 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C1%2C4%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C9.5e-08%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:155%2C0%2C71:74 scaffold987 SAMTools SNP 410180 410180 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold987 SAMTools SNP 410216 410216 126 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C3%2C1%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.49%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:156%2C0%2C107:99 scaffold987 SAMTools SNP 411364 411364 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0449%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C14%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold987 SAMTools SNP 411373 411373 40.8 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:72%2C6%2C0:10 scaffold987 SAMTools SNP 412301 412301 159 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0242%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:192%2C15%2C0:27 scaffold987 SAMTools SNP 412420 412420 136 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0306%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D9.53%3BPV4%3D0.47%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:166%2C0%2C36:39 scaffold987 SAMTools SNP 412801 412801 195 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C2%2C4%3BMQ%3D50%3BFQ%3D49%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C76:79 scaffold987 SAMTools SNP 412919 412919 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold987 SAMTools SNP 412939 412939 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C3%2C5%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.65%2C0.092%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 413109 413109 58 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C11%2C0%2C3%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C223:91 scaffold987 SAMTools SNP 413212 413212 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold987 SAMTools SNP 413539 413539 152 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:185%2C15%2C0:27 scaffold987 SAMTools SNP 413623 413623 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold987 SAMTools SNP 414771 414771 196 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C5%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:229%2C18%2C0:33 scaffold987 SAMTools SNP 415336 415336 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C14%2C8%3BMQ%3D50%3BFQ%3D180%3BPV4%3D0.00024%2C0.15%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C207:99 scaffold987 SAMTools SNP 415396 415396 43 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C15%2C0%2C3%3BMQ%3D50%3BFQ%3D46%3BPV4%3D1%2C1%2C1%2C0.034;FORMAT=GT:PL:GQ;SAMPLE=0/1:73%2C0%2C255:76 scaffold987 SAMTools SNP 415492 415492 66.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0158%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:98%2C6%2C0:10 scaffold987 SAMTools SNP 415715 415715 93 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0325%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D96%3BPV4%3D0.21%2C3.6e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:123%2C0%2C182:99 scaffold987 SAMTools SNP 417081 417081 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C3%2C5%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 417319 417319 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C22%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold987 SAMTools SNP 421752 421752 55.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:88%2C18%2C0:33 scaffold987 SAMTools SNP 425288 425288 6.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D3%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C132:36 scaffold987 SAMTools SNP 425316 425316 44 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:74%2C0%2C246:77 scaffold987 SAMTools SNP 425322 425322 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D57%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C49%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C0.21%2C1%2C0.36;FORMAT=GT:PL:GQ;SAMPLE=0/1:246%2C0%2C74:77 scaffold987 SAMTools SNP 425352 425352 41 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D58%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C2%2C7%2C0%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.37%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:71%2C0%2C255:74 scaffold987 SAMTools SNP 425657 425657 110 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0175%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold987 SAMTools SNP 425675 425675 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C31%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C93%2C0:99 scaffold987 SAMTools SNP 425714 425714 47 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C49%2C0%2C7%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:77%2C0%2C209:80 scaffold987 SAMTools SNP 425861 425861 180 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D55%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C48%3BMQ%3D50%3BFQ%3D53%3BPV4%3D1%2C0.49%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C80:83 scaffold987 SAMTools SNP 425891 425891 211 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C21%3BMQ%3D50%3BFQ%3D107%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C134:99 scaffold987 SAMTools SNP 426208 426208 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C0%2C13%2C0%3BMQ%3D50%3BFQ%3D197%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C232:99 scaffold987 SAMTools SNP 426570 426570 189 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D30%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C0%2C12%3BMQ%3D50%3BFQ%3D192%3BPV4%3D1%2C0.19%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:219%2C0%2C237:99 scaffold987 SAMTools SNP 426615 426615 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C19%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold987 SAMTools SNP 427313 427313 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 427609 427609 13.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0188%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C3%2C0:5 scaffold987 SAMTools SNP 430015 430015 199 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D155%3BPV4%3D1%2C0.28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:229%2C0%2C182:99 scaffold987 SAMTools SNP 430042 430042 121 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0032%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D124%3BPV4%3D1%2C0.13%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C180:99 scaffold987 SAMTools SNP 430408 430408 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D6%2C12%2C2%2C0%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.15%2C0.22%2C1%2C0.03;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold987 SAMTools SNP 430741 430741 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C1%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold987 SAMTools SNP 430972 430972 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0396%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C3%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.21%2C1%2C1%2C0.01;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 430984 430984 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0324%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C5%2C6%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold987 SAMTools SNP 431383 431383 18.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C12%2C5%2C0%3BMQ%3D50%3BFQ%3D21%3BPV4%3D0.037%2C4.2e-07%2C1%2C0.097;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold987 SAMTools SNP 431393 431393 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C12%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold987 SAMTools SNP 431985 431985 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D50%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C33%2C0:63 scaffold987 SAMTools SNP 434240 434240 190 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C0%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold987 SAMTools SNP 434266 434266 82 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0222%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.015%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C77:80 scaffold987 SAMTools SNP 434648 434648 22 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D25%3BPV4%3D1%2C0.079%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:52%2C0%2C117:55 scaffold987 SAMTools SNP 434764 434764 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D4.79%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C37:30 scaffold987 SAMTools SNP 434765 434765 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold987 SAMTools SNP 436677 436677 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold987 SAMTools SNP 436698 436698 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D151%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C150%2C1%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold987 SAMTools SNP 440746 440746 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C22%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold99 SAMTools SNP 67440 67440 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 67588 67588 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 67590 67590 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 98914 98914 11.3 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0158%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold99 SAMTools SNP 98958 98958 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0061%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 129028 129028 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D213%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C185%3BMQ%3D15%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 129094 129094 161 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C23%2C0%2C15%3BMQ%3D34%3BFQ%3D144%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:191%2C0%2C171:99 scaffold99 SAMTools SNP 203805 203805 6.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0414%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.00032%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C85:36 scaffold99 SAMTools SNP 204092 204092 12.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0253%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D15.1%3BPV4%3D1%2C0.016%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:42%2C0%2C125:44 scaffold99 SAMTools SNP 204903 204903 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold99 SAMTools SNP 209684 209684 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 212241 212241 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold99 SAMTools SNP 212565 212565 55 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:87%2C9%2C0:16 scaffold99 SAMTools SNP 212631 212631 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.026;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C188:31 scaffold99 SAMTools SNP 212659 212659 6.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C148:36 scaffold99 SAMTools SNP 214690 214690 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold99 SAMTools SNP 226213 226213 35.5 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C12%2C0:21 scaffold99 SAMTools SNP 226352 226352 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C13%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold99 SAMTools SNP 226658 226658 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D37%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C12%2C0%2C9%3BMQ%3D50%3BFQ%3D172%3BPV4%3D1%2C1%2C1%2C0.49;FORMAT=GT:PL:GQ;SAMPLE=0/1:199%2C0%2C227:99 scaffold99 SAMTools SNP 227179 227179 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 228965 228965 4.13 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C2%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1.4e-06%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C110:31 scaffold99 SAMTools SNP 230773 230773 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C0%3BMQ%3D49%3BFQ%3D-153;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C126%2C0:99 scaffold99 SAMTools SNP 230788 230788 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C64%2C1%3BMQ%3D46%3BFQ%3D-207%3BPV4%3D1%2C0.093%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C180%2C0:99 scaffold99 SAMTools SNP 230822 230822 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D391%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D151%2C29%2C211%2C0%3BMQ%3D47%3BFQ%3D225%3BPV4%3D4.5e-11%2C1%2C1%2C4.7e-69;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 230830 230830 129 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D724%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D560%2C1%2C130%2C33%3BMQ%3D46%3BFQ%3D132%3BPV4%3D7.7e-22%2C4.5e-09%2C0.46%2C1.1e-11;FORMAT=GT:PL:GQ;SAMPLE=0/1:159%2C0%2C199:99 scaffold99 SAMTools SNP 230848 230848 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D987%3BVDB%3D0.0004%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D490%2C46%2C450%2C1%3BMQ%3D41%3BFQ%3D225%3BPV4%3D6.8e-12%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 231349 231349 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D78%2C6%2C51%2C2%3BMQ%3D46%3BFQ%3D225%3BPV4%3D0.48%2C0.028%2C1%2C0.092;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 231779 231779 148 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D452%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C2%2C399%2C7%3BMQ%3D12%3BFQ%3D-282%3BPV4%3D0.0013%2C1%2C0.017%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=1/1:181%2C255%2C0:99 scaffold99 SAMTools SNP 242075 242075 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C0%3BMQ%3D46%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C75%2C0:99 scaffold99 SAMTools SNP 242093 242093 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C22%2C0%3BMQ%3D48%3BFQ%3D-93;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C66%2C0:99 scaffold99 SAMTools SNP 242652 242652 226 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D326%3BVDB%3D0.0394%3BAF1%3D0.6672%3BAC1%3D1%3BDP4%3D65%2C0%2C257%2C4%3BMQ%3D49%3BFQ%3D-24%3BPV4%3D0.59%2C1%2C0.046%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C3:6 scaffold99 SAMTools SNP 242706 242706 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D192%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D72%2C68%2C6%2C46%3BMQ%3D41%3BFQ%3D225%3BPV4%3D2e-07%2C1.2e-11%2C1%2C0.013;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 242715 242715 95 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D339%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D46%2C200%2C85%2C8%3BMQ%3D40%3BFQ%3D98%3BPV4%3D2.8e-36%2C1%2C6.2e-43%2C1.9e-09;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C255:99 scaffold99 SAMTools SNP 243572 243572 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D354%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C354%3BMQ%3D34%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 243807 243807 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D317%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C317%3BMQ%3D39%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 280627 280627 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 304167 304167 21 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C19%2C0%2C7%3BMQ%3D50%3BFQ%3D24%3BPV4%3D1%2C2.5e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:51%2C0%2C242:54 scaffold99 SAMTools SNP 304525 304525 73 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C14%2C0%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:106%2C42%2C0:81 scaffold99 SAMTools SNP 305597 305597 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D33%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C6%2C0%2C25%3BMQ%3D50%3BFQ%3D43%3BPV4%3D1%2C7.3e-15%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C119:73 scaffold99 SAMTools SNP 305771 305771 33 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C8%3BMQ%3D47%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:66%2C27%2C0:50 scaffold99 SAMTools SNP 305835 305835 16.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D35%3BFQ%3D-28%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C1%2C0:4 scaffold99 SAMTools SNP 305962 305962 3.02 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0374%3BAF1%3D0.5007%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D-5.43%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C24:27 scaffold99 SAMTools SNP 307859 307859 7.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0440%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C16%2C0%2C8%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D0.53%2C2.8e-21%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C255:39 scaffold99 SAMTools SNP 309169 309169 222 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C3%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold99 SAMTools SNP 309866 309866 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 329555 329555 15.6 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0011%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:48%2C12%2C0:20 scaffold99 SAMTools SNP 329906 329906 3.98 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold99 SAMTools SNP 332888 332888 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C5%3BMQ%3D50%3BFQ%3D-57;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C30%2C0:57 scaffold99 SAMTools SNP 333185 333185 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold99 SAMTools SNP 354291 354291 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 362928 362928 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold99 SAMTools SNP 363128 363128 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 363980 363980 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 363990 363990 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 364205 364205 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 368263 368263 192 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C1%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:225%2C18%2C0:33 scaffold99 SAMTools SNP 368466 368466 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 368500 368500 10.7 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C15%2C0:21 scaffold99 SAMTools SNP 375678 375678 143 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold99 SAMTools SNP 384158 384158 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C83:43 scaffold99 SAMTools SNP 384173 384173 28 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D31%3BPV4%3D1%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:58%2C0%2C80:61 scaffold99 SAMTools SNP 384258 384258 130 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C1%2C1%2C0.049;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold99 SAMTools SNP 384776 384776 181 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C9%3BMQ%3D50%3BFQ%3D66%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C93:96 scaffold99 SAMTools SNP 384985 384985 7.8 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D9.72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C44:38 scaffold99 SAMTools SNP 394877 394877 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0168%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C217:60 scaffold99 SAMTools SNP 394881 394881 5.46 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0111%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C2%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C1%2C1%2C0.0054;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C137:34 scaffold99 SAMTools SNP 394889 394889 93 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0356%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 395613 395613 122 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C2%2C2%3BMQ%3D50%3BFQ%3D47%3BPV4%3D0.47%2C0.25%2C1%2C0.0094;FORMAT=GT:PL:GQ;SAMPLE=0/1:152%2C0%2C74:77 scaffold99 SAMTools SNP 395664 395664 218 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C6%3BMQ%3D40%3BFQ%3D-60;FORMAT=GT:PL:GQ;SAMPLE=1/1:251%2C33%2C0:63 scaffold99 SAMTools SNP 397927 397927 4.13 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 397933 397933 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 404241 404241 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.081%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C91:36 scaffold99 SAMTools SNP 407301 407301 59.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 407309 407309 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 409065 409065 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 409074 409074 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 410558 410558 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 410843 410843 48 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.33%2C0.32%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C41:44 scaffold99 SAMTools SNP 411734 411734 68.8 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0104%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold99 SAMTools SNP 411816 411816 68.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold99 SAMTools SNP 411838 411838 68.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0190%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold99 SAMTools SNP 412380 412380 59.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 412386 412386 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 413549 413549 27 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0217%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.52%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C255:60 scaffold99 SAMTools SNP 415383 415383 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold99 SAMTools SNP 415421 415421 4.13 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.089;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 415452 415452 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 415796 415796 4.13 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C153:31 scaffold99 SAMTools SNP 415807 415807 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0366%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 415814 415814 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 419551 419551 59.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 419829 419829 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold99 SAMTools SNP 429015 429015 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0166%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 430940 430940 84 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0190%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C3%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C0.00043;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold99 SAMTools SNP 430987 430987 147 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C6%3BMQ%3D50%3BFQ%3D42%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:177%2C0%2C69:72 scaffold99 SAMTools SNP 431358 431358 59.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 466226 466226 11.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C72:43 scaffold99 SAMTools SNP 534417 534417 27.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C1%2C2%2C3%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D1%2C0.00017%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:60%2C10%2C0:17 scaffold99 SAMTools SNP 534516 534516 24 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D40%2C2%2C5%2C0%3BMQ%3D50%3BFQ%3D27%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C255:57 scaffold99 SAMTools SNP 534518 534518 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D49%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D170%3BPV4%3D0.036%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C234:99 scaffold99 SAMTools SNP 538765 538765 181 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D32%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D24%2C0%2C6%2C2%3BMQ%3D49%3BFQ%3D184%3BPV4%3D0.056%2C1%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:211%2C0%2C240:99 scaffold99 SAMTools SNP 541889 541889 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C36%2C6%2C11%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.35%2C1%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 541910 541910 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C12%2C11%2C35%3BMQ%3D47%3BFQ%3D225%3BPV4%3D0.75%2C1%2C0.045%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 541944 541944 54 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C44%2C4%2C3%3BMQ%3D49%3BFQ%3D57%3BPV4%3D0.063%2C1%2C0.11%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:84%2C0%2C255:87 scaffold99 SAMTools SNP 541948 541948 106 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C24%2C4%2C3%3BMQ%3D49%3BFQ%3D109%3BPV4%3D0.2%2C0.19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:136%2C0%2C255:99 scaffold99 SAMTools SNP 556729 556729 93 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 556730 556730 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.21%2C1%2C0.065;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold99 SAMTools SNP 576869 576869 128 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D32%2C12%2C12%2C0%3BMQ%3D50%3BFQ%3D131%3BPV4%3D0.051%2C1%2C1%2C0.069;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C255:99 scaffold99 SAMTools SNP 576870 576870 119 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D31%2C12%2C11%2C0%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.097%2C0.3%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold99 SAMTools SNP 576911 576911 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C48%3BMQ%3D50%3BFQ%3D-214;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C187%2C0:99 scaffold99 SAMTools SNP 577662 577662 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D377%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D205%2C5%2C150%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C0.069%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 577752 577752 105 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D400%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C211%2C12%2C156%3BMQ%3D50%3BFQ%3D108%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:135%2C0%2C255:99 scaffold99 SAMTools SNP 577872 577872 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D53%2C2%2C57%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.17%2C0.16%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 578550 578550 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D134%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C50%2C7%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00076%2C0.3%2C1%2C0.017;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 578686 578686 130 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D133%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C252:99 scaffold99 SAMTools SNP 582259 582259 63 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:96%2C72%2C0:99 scaffold99 SAMTools SNP 582298 582298 50 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0033%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C1%3BMQ%3D50%3BFQ%3D-120;FORMAT=GT:PL:GQ;SAMPLE=1/1:83%2C93%2C0:99 scaffold99 SAMTools SNP 582570 582570 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5063%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D-11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C16:19 scaffold99 SAMTools SNP 582755 582755 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D139%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C56%2C56%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 582777 582777 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C60%2C78%3BMQ%3D49%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 583378 583378 219 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0440%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C5%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.3%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C26:29 scaffold99 SAMTools SNP 584800 584800 45.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:78%2C12%2C0:21 scaffold99 SAMTools SNP 584983 584983 26 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C0.0076%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:56%2C0%2C38:41 scaffold99 SAMTools SNP 585387 585387 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C30%2C10%2C35%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.26%2C1%2C0.2;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 585414 585414 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D103%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C38%2C12%2C30%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.4%2C5.6e-06%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 585473 585473 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C20%2C21%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold99 SAMTools SNP 585492 585492 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D50%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D14%2C16%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 585665 585665 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C16%2C2%2C8%3BMQ%3D50%3BFQ%3D212%3BPV4%3D0.14%2C0.31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C239:99 scaffold99 SAMTools SNP 585733 585733 225 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.64%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 586308 586308 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D101%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D34%2C7%2C1%2C6%3BMQ%3D50%3BFQ%3D79%3BPV4%3D0.00084%2C0.23%2C1%2C8.4e-10;FORMAT=GT:PL:GQ;SAMPLE=0/1:106%2C0%2C255:99 scaffold99 SAMTools SNP 595867 595867 14.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold99 SAMTools SNP 596026 596026 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D143%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D61%2C17%2C36%2C27%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.01%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 596047 596047 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D342%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C183%2C10%2C137%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.66%2C0.047%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 596421 596421 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D154%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D49%2C52%2C43%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.00012%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 598471 598471 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C15%3BMQ%3D50%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C48%2C0:93 scaffold99 SAMTools SNP 601226 601226 49.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:82%2C21%2C0:39 scaffold99 SAMTools SNP 601816 601816 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0077%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold99 SAMTools SNP 602417 602417 210 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0115%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C1%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C21%2C0:39 scaffold99 SAMTools SNP 602435 602435 169 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:202%2C15%2C0:27 scaffold99 SAMTools SNP 602480 602480 130 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C5%3BMQ%3D50%3BFQ%3D44%3BPV4%3D1%2C0.16%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:160%2C0%2C71:74 scaffold99 SAMTools SNP 605258 605258 4.13 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.0097%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 605862 605862 4.13 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold99 SAMTools SNP 608671 608671 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold99 SAMTools SNP 611549 611549 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 611688 611688 12.2 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0063%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C9%2C0:14 scaffold99 SAMTools SNP 611894 611894 162 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold99 SAMTools SNP 611902 611902 190 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:223%2C24%2C0:45 scaffold99 SAMTools SNP 615191 615191 59.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold99 SAMTools SNP 615270 615270 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0146%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 615587 615587 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D173%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C173%2C0%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 617262 617262 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 621528 621528 177 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold99 SAMTools SNP 622202 622202 7.8 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C7%2C0%2C4%3BMQ%3D50%3BFQ%3D10.4%3BPV4%3D1%2C4.2e-09%2C1%2C0.48;FORMAT=GT:PL:GQ;SAMPLE=0/1:37%2C0%2C238:39 scaffold99 SAMTools SNP 633623 633623 53 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0133%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold99 SAMTools SNP 634051 634051 73 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D39%2C5%2C0%2C8%3BMQ%3D50%3BFQ%3D76%3BPV4%3D1.7e-06%2C7.1e-10%2C1%2C0.0025;FORMAT=GT:PL:GQ;SAMPLE=0/1:103%2C0%2C255:99 scaffold99 SAMTools SNP 634095 634095 222 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C27%2C41%3BMQ%3D50%3BFQ%3D-232;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C205%2C0:99 scaffold99 SAMTools SNP 634466 634466 83 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C26%2C0%2C6%3BMQ%3D50%3BFQ%3D86%3BPV4%3D1%2C1%2C1%2C0.00047;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C255:99 scaffold99 SAMTools SNP 635280 635280 127 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D77%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D130%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:157%2C0%2C255:99 scaffold99 SAMTools SNP 635292 635292 135 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D98%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D73%2C1%2C24%2C0%3BMQ%3D50%3BFQ%3D138%3BPV4%3D1%2C1%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:165%2C0%2C255:99 scaffold99 SAMTools SNP 635334 635334 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0013%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C3%2C4%2C99%3BMQ%3D50%3BFQ%3D-255%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C228%2C0:99 scaffold99 SAMTools SNP 635343 635343 112 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D104%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C77%2C0%2C25%3BMQ%3D50%3BFQ%3D115%3BPV4%3D1%2C0.45%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:142%2C0%2C255:99 scaffold99 SAMTools SNP 635534 635534 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C12%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold99 SAMTools SNP 637473 637473 216 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold99 SAMTools SNP 637487 637487 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold99 SAMTools SNP 638194 638194 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C16%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold99 SAMTools SNP 638635 638635 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C11%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold99 SAMTools SNP 638668 638668 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold99 SAMTools SNP 638876 638876 151 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C12%2C0:21 scaffold99 SAMTools SNP 638885 638885 24 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D27%3BPV4%3D0.33%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:54%2C0%2C80:57 scaffold99 SAMTools SNP 639060 639060 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0250%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold99 SAMTools SNP 641082 641082 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold99 SAMTools SNP 641085 641085 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C15%2C2%3BMQ%3D50%3BFQ%3D-78;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C51%2C0:99 scaffold99 SAMTools SNP 641284 641284 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold99 SAMTools SNP 641296 641296 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0414%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C7%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold99 SAMTools SNP 641705 641705 9.52 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C18%2C0%2C4%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D0.55%2C0.0026%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:39%2C0%2C255:41 scaffold99 SAMTools SNP 642264 642264 216 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold99 SAMTools SNP 642297 642297 216 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:249%2C21%2C0:39 scaffold99 SAMTools SNP 648955 648955 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D224%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C167%2C49%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold99 SAMTools SNP 649015 649015 219 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D267%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C109%2C11%2C51%3BMQ%3D50%3BFQ%3D221%3BPV4%3D0.00042%2C4.3e-35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:249%2C0%2C255:99 scaffold99 SAMTools SNP 649023 649023 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D203%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C25%2C54%3BMQ%3D50%3BFQ%3D-265;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C238%2C0:99 scaffold99 SAMTools SNP 651160 651160 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C12%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.22%2C1%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 653796 653796 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D135%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D60%2C14%2C49%2C11%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.29;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 654048 654048 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D138%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C48%2C25%2C48%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C0.13%2C1%2C0.063;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 654298 654298 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D81%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D27%2C17%2C28%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 658876 658876 52 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.004%2C1%2C1%2C0.00039;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C255:85 scaffold99 SAMTools SNP 659688 659688 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C8%2C12%3BMQ%3D49%3BFQ%3D-87;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C60%2C0:99 scaffold99 SAMTools SNP 660100 660100 83 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C2%3BMQ%3D47%3BFQ%3D86%3BPV4%3D1%2C0.31%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:113%2C0%2C226:99 scaffold99 SAMTools SNP 660202 660202 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C2%2C27%2C1%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.56%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 661050 661050 6.2 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.45%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C162:36 scaffold99 SAMTools SNP 661064 661064 110 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0026%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:142%2C9%2C0:16 scaffold99 SAMTools SNP 661145 661145 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 664585 664585 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C37%2C5%2C13%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.093%2C0.021%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold99 SAMTools SNP 668178 668178 144 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C12%2C0:21 scaffold99 SAMTools SNP 668665 668665 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C10%3BMQ%3D50%3BFQ%3D217%3BPV4%3D1%2C0.2%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C244:99 scaffold99 SAMTools SNP 668669 668669 194 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C10%2C2%2C5%3BMQ%3D50%3BFQ%3D197%3BPV4%3D0.6%2C0.048%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:224%2C0%2C255:99 scaffold99 SAMTools SNP 668687 668687 167 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D20%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C9%2C2%2C4%3BMQ%3D50%3BFQ%3D170%3BPV4%3D1%2C1%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C255:99 scaffold99 SAMTools SNP 668957 668957 180 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C3%2C3%3BMQ%3D50%3BFQ%3D183%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:210%2C0%2C255:99 scaffold99 SAMTools SNP 669859 669859 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C7%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C24%2C0:45 scaffold99 SAMTools SNP 669901 669901 136 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:169%2C18%2C0:33 scaffold99 SAMTools SNP 670003 670003 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 670447 670447 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0073%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold99 SAMTools SNP 670820 670820 61 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C8%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold992 SAMTools SNP 4744 4744 116 . . REF=A;ALT=G,C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:183%2C47%2C35%2C143%2C0%2C140:21 scaffold992 SAMTools SNP 9652 9652 110 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:140%2C0%2C35:38 scaffold992 SAMTools SNP 9677 9677 49.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0115%3BAF1%3D0.5102%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C11%3BMQ%3D50%3BFQ%3D-13.2%3BPV4%3D1%2C5.7e-07%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:79%2C0%2C14:17 scaffold992 SAMTools SNP 25817 25817 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 26515 26515 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 28089 28089 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 28252 28252 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 29745 29745 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 36371 36371 193 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C0%2C12%2C0%3BMQ%3D50%3BFQ%3D193%3BPV4%3D1%2C0.12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:223%2C0%2C223:99 scaffold992 SAMTools SNP 36712 36712 20.1 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D1%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 37184 37184 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C0%3BMQ%3D50%3BFQ%3D-99;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C72%2C0:99 scaffold992 SAMTools SNP 37196 37196 29 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0100%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D32%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:59%2C0%2C232:62 scaffold992 SAMTools SNP 39150 39150 36.8 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:68%2C6%2C0:10 scaffold992 SAMTools SNP 39290 39290 4.46 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D6%2C0%2C1%2C0%3BMQ%3D19%3BFQ%3D-31%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C4%2C0:4 scaffold992 SAMTools SNP 40301 40301 113 . . REF=G;ALT=A,C;FILTER=.;INFO=DP%3D40%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C0%3BMQ%3D47%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C190%2C109%2C255%2C0%2C218:99 scaffold992 SAMTools SNP 40819 40819 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C45%3BMQ%3D49%3BFQ%3D-162;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C135%2C0:99 scaffold992 SAMTools SNP 46470 46470 49.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C6%2C0:10 scaffold992 SAMTools SNP 46568 46568 13.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:45%2C9%2C0:14 scaffold992 SAMTools SNP 58187 58187 32.5 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:65%2C12%2C0:21 scaffold992 SAMTools SNP 58192 58192 38.5 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:71%2C12%2C0:21 scaffold992 SAMTools SNP 58848 58848 80 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C7%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:113%2C27%2C0:51 scaffold992 SAMTools SNP 59279 59279 174 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C5%2C1%3BMQ%3D50%3BFQ%3D81%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C108:99 scaffold992 SAMTools SNP 59327 59327 183 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C4%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C18%2C0:33 scaffold992 SAMTools SNP 59405 59405 77 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C0%2C3%3BMQ%3D50%3BFQ%3D80%3BPV4%3D0.43%2C0.25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:107%2C0%2C163:99 scaffold992 SAMTools SNP 61509 61509 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C22%2C2%3BMQ%3D50%3BFQ%3D-52%3BPV4%3D1%2C0.35%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C25%2C0:47 scaffold992 SAMTools SNP 61904 61904 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C30%3BMQ%3D50%3BFQ%3D-144;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C117%2C0:99 scaffold992 SAMTools SNP 63036 63036 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D55%2C5%2C41%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1.8e-42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 63126 63126 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D28%2C53%2C15%2C23%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.68%2C0.00036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 63153 63153 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D147%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D25%2C58%2C23%2C41%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.48%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 63921 63921 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C24%2C56%3BMQ%3D50%3BFQ%3D-268;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C241%2C0:99 scaffold992 SAMTools SNP 64910 64910 223 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D3%2C1%2C21%2C39%3BMQ%3D46%3BFQ%3D-37%3BPV4%3D0.14%2C0.3%2C0.18%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C10%2C0:17 scaffold992 SAMTools SNP 64928 64928 108 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C34%2C4%2C4%3BMQ%3D46%3BFQ%3D111%3BPV4%3D0.71%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:138%2C0%2C255:99 scaffold992 SAMTools SNP 66235 66235 19.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C6%2C0:10 scaffold992 SAMTools SNP 66863 66863 97 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D22%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C15%2C1%2C5%3BMQ%3D41%3BFQ%3D100%3BPV4%3D0.29%2C0.06%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:127%2C0%2C205:99 scaffold992 SAMTools SNP 67006 67006 196 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D27%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C12%2C0%2C13%3BMQ%3D50%3BFQ%3D199%3BPV4%3D0.48%2C1%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:226%2C0%2C255:99 scaffold992 SAMTools SNP 67007 67007 178 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C14%2C0%2C11%3BMQ%3D50%3BFQ%3D181%3BPV4%3D0.26%2C0.18%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:208%2C0%2C255:99 scaffold992 SAMTools SNP 67396 67396 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C16%2C9%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.19%2C0.091%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 67428 67428 85 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C3%2C2%2C2%3BMQ%3D50%3BFQ%3D88%3BPV4%3D0.27%2C0.31%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:115%2C0%2C255:99 scaffold992 SAMTools SNP 67440 67440 31 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C1%2C1%3BMQ%3D50%3BFQ%3D34%3BPV4%3D1%2C1%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:61%2C0%2C255:64 scaffold992 SAMTools SNP 67464 67464 61 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C11%2C1%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold992 SAMTools SNP 68125 68125 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0394%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C21%2C0:39 scaffold992 SAMTools SNP 68134 68134 182 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C0%2C9%2C2%3BMQ%3D50%3BFQ%3D61%3BPV4%3D1%2C0.059%2C1%2C0.38;FORMAT=GT:PL:GQ;SAMPLE=0/1:212%2C0%2C88:91 scaffold992 SAMTools SNP 69597 69597 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C11%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.7%2C0.15%2C1%2C0.06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 69659 69659 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C5%2C14%3BMQ%3D50%3BFQ%3D187%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C214:99 scaffold992 SAMTools SNP 69681 69681 19.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C29%2C0%2C7%3BMQ%3D50%3BFQ%3D22%3BPV4%3D0.58%2C4.1e-06%2C1%2C0.003;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C255:52 scaffold992 SAMTools SNP 75053 75053 11.3 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.28;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C74:43 scaffold992 SAMTools SNP 75140 75140 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C148:99 scaffold992 SAMTools SNP 77985 77985 217 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C4%2C11%2C2%3BMQ%3D46%3BFQ%3D219%3BPV4%3D0.65%2C1%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:247%2C0%2C255:99 scaffold992 SAMTools SNP 80612 80612 119 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0374%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C6%2C0%3BMQ%3D41%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:152%2C18%2C0:33 scaffold992 SAMTools SNP 81811 81811 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0141%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D1%2C1%2C3%2C2%3BMQ%3D38%3BFQ%3D7.8%3BPV4%3D1%2C0.16%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:112%2C0%2C34:37 scaffold992 SAMTools SNP 84103 84103 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C114:40 scaffold992 SAMTools SNP 84136 84136 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold992 SAMTools SNP 85819 85819 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold992 SAMTools SNP 88571 88571 93 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0263%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold992 SAMTools SNP 96035 96035 133 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0018%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C9%2C0%3BMQ%3D50%3BFQ%3D136%3BPV4%3D0.47%2C0.0057%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:163%2C0%2C210:99 scaffold992 SAMTools SNP 109870 109870 7.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C3%2C0:4 scaffold992 SAMTools SNP 109985 109985 79 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C1%2C2%2C1%3BMQ%3D50%3BFQ%3D82%3BPV4%3D0.49%2C0.0016%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:109%2C0%2C235:99 scaffold992 SAMTools SNP 110254 110254 5.46 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0248%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D2%2C6%2C1%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.037%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C255:34 scaffold992 SAMTools SNP 110361 110361 6.2 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.098%2C1%2C0.21;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C75:36 scaffold992 SAMTools SNP 110451 110451 143 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold992 SAMTools SNP 110729 110729 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C0%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold992 SAMTools SNP 112349 112349 105 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C2%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:137%2C12%2C0:21 scaffold992 SAMTools SNP 112855 112855 119 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C3%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:151%2C12%2C0:21 scaffold992 SAMTools SNP 113277 113277 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0057%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C3%2C4%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D1%2C0.31%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C26:29 scaffold992 SAMTools SNP 113304 113304 36 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0201%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C2%2C1%3BMQ%3D50%3BFQ%3D38.7%3BPV4%3D1%2C0.097%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C77:69 scaffold992 SAMTools SNP 113545 113545 50 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold992 SAMTools SNP 113546 113546 50 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D50%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:80%2C0%2C80:80 scaffold992 SAMTools SNP 113630 113630 59.8 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold992 SAMTools SNP 113987 113987 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold992 SAMTools SNP 114498 114498 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 114527 114527 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 117454 117454 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 117522 117522 4.77 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold992 SAMTools SNP 117526 117526 4.77 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C3%2C0:3 scaffold992 SAMTools SNP 119064 119064 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 124788 124788 20.1 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0201%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 128001 128001 48.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:80%2C6%2C0:10 scaffold992 SAMTools SNP 128127 128127 9.53 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C3%2C0:5 scaffold992 SAMTools SNP 130797 130797 20.1 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0116%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 136715 136715 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.011%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C91:34 scaffold992 SAMTools SNP 137255 137255 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C4%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.11%2C1.7e-12%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C255:40 scaffold992 SAMTools SNP 138595 138595 138 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0033%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C2%2C2%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D1%2C0.14%2C1%2C0.42;FORMAT=GT:PL:GQ;SAMPLE=0/1:168%2C0%2C35:38 scaffold992 SAMTools SNP 139344 139344 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D59%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C19%3BMQ%3D50%3BFQ%3D-205;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C178%2C0:99 scaffold992 SAMTools SNP 140113 140113 225 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D61%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C36%2C3%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.69%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 141141 141141 168 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D122%3BPV4%3D1%2C0.059%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:198%2C0%2C149:99 scaffold992 SAMTools SNP 141447 141447 8.64 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D4%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C0.3%2C1%2C0.24;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C130:40 scaffold992 SAMTools SNP 143215 143215 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 143218 143218 20.1 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0174%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 143341 143341 225 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C7%2C2%3BMQ%3D50%3BFQ%3D163%3BPV4%3D1%2C1%2C1%2C0.46;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C190:99 scaffold992 SAMTools SNP 143608 143608 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C6%2C6%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 144455 144455 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold992 SAMTools SNP 144636 144636 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C6%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 145288 145288 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C10%2C4%2C5%3BMQ%3D50%3BFQ%3D186%3BPV4%3D0.033%2C0.011%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C213:99 scaffold992 SAMTools SNP 145661 145661 171 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0018%3BAF1%3D0.5013%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C8%3BMQ%3D50%3BFQ%3D-5.45%3BPV4%3D1%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C23:26 scaffold992 SAMTools SNP 145676 145676 143 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C5%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:176%2C15%2C0:27 scaffold992 SAMTools SNP 145709 145709 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0040%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold992 SAMTools SNP 145912 145912 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C173:31 scaffold992 SAMTools SNP 146090 146090 195 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C0%2C3%2C3%3BMQ%3D50%3BFQ%3D102%3BPV4%3D0.2%2C0.13%2C1%2C0.4;FORMAT=GT:PL:GQ;SAMPLE=0/1:225%2C0%2C129:99 scaffold992 SAMTools SNP 146247 146247 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0233%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C2%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C27%2C0:51 scaffold992 SAMTools SNP 146611 146611 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold992 SAMTools SNP 146617 146617 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C30%2C5%3BMQ%3D50%3BFQ%3D-132;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C105%2C0:99 scaffold992 SAMTools SNP 146941 146941 46 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D68%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C18%2C9%2C0%3BMQ%3D50%3BFQ%3D49%3BPV4%3D0.018%2C0.015%2C1%2C0.00037;FORMAT=GT:PL:GQ;SAMPLE=0/1:76%2C0%2C255:79 scaffold992 SAMTools SNP 147471 147471 36 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0227%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D1%2C1%2C1%2C0.055;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C191:69 scaffold992 SAMTools SNP 147504 147504 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0350%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C1%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold992 SAMTools SNP 147997 147997 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D54%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C13%2C11%2C19%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.58%2C0.36%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 148933 148933 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C8%2C4%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold992 SAMTools SNP 149342 149342 4.77 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0214%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D1%2C0.0002%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C125:33 scaffold992 SAMTools SNP 149602 149602 42 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D41.5%3BPV4%3D1%2C0.00055%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:72%2C0%2C71:71 scaffold992 SAMTools SNP 150552 150552 142 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C9%2C16%3BMQ%3D50%3BFQ%3D-102;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C75%2C0:99 scaffold992 SAMTools SNP 151643 151643 22.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:55%2C15%2C0:26 scaffold992 SAMTools SNP 158126 158126 14.2 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold992 SAMTools SNP 165876 165876 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C31%3BMQ%3D50%3BFQ%3D-141;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C114%2C0:99 scaffold993 SAMTools SNP 1365 1365 140 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D66%3BVDB%3D0.0006%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C7%2C37%2C1%3BMQ%3D47%3BFQ%3D143%3BPV4%3D0.0084%2C2.2e-05%2C1%2C0.0044;FORMAT=GT:PL:GQ;SAMPLE=0/1:170%2C0%2C187:99 scaffold993 SAMTools SNP 1381 1381 8.64 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C3%2C5%2C0%3BMQ%3D48%3BFQ%3D11.3%3BPV4%3D1%2C0.054%2C1%2C0.059;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C244:40 scaffold993 SAMTools SNP 1392 1392 98 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C5%2C10%2C0%3BMQ%3D47%3BFQ%3D101%3BPV4%3D0.011%2C8.3e-05%2C1%2C0.34;FORMAT=GT:PL:GQ;SAMPLE=0/1:128%2C0%2C213:99 scaffold993 SAMTools SNP 1671 1671 17.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D23%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C4%2C2%2C1%3BMQ%3D50%3BFQ%3D20.1%3BPV4%3D1%2C0.00066%2C1%2C0.23;FORMAT=GT:PL:GQ;SAMPLE=0/1:47%2C0%2C255:50 scaffold993 SAMTools SNP 4779 4779 41.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:74%2C15%2C0:27 scaffold993 SAMTools SNP 4984 4984 13 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D229%3BVDB%3D0.0004%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:44%2C6%2C0:9 scaffold993 SAMTools SNP 5190 5190 52 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D744%3BVDB%3D0.0417%3BAF1%3D0.5006%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C6%3BMQ%3D50%3BFQ%3D-3.53%3BPV4%3D0.25%2C0.0003%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:82%2C0%2C26:29 scaffold993 SAMTools SNP 5208 5208 121 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D612%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C298%2C288%3BMQ%3D36%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:154%2C255%2C0:99 scaffold993 SAMTools SNP 5561 5561 18.6 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:51%2C12%2C0:20 scaffold993 SAMTools SNP 5851 5851 84 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D113%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D20%2C36%2C10%2C40%3BMQ%3D50%3BFQ%3D87%3BPV4%3D0.087%2C5.8e-59%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C255:99 scaffold993 SAMTools SNP 6596 6596 30.5 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D123%3BVDB%3D0.0025%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:63%2C12%2C0:21 scaffold993 SAMTools SNP 6647 6647 25 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C5%2C7%2C6%3BMQ%3D50%3BFQ%3D28%3BPV4%3D0.13%2C1.3e-19%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:55%2C0%2C255:58 scaffold993 SAMTools SNP 6914 6914 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D119%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C58%2C6%2C51%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.31%2C9.4e-88%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold993 SAMTools SNP 7111 7111 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D8%2C2%2C18%2C1%3BMQ%3D50%3BFQ%3D72%3BPV4%3D0.27%2C1.1e-10%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C234:99 scaffold993 SAMTools SNP 7334 7334 11.3 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D153%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C71%2C10%2C47%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D0.0051%2C2.4e-109%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C255:43 scaffold993 SAMTools SNP 9897 9897 40 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C14%2C10%2C3%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.013%2C2.8e-30%2C1%2C0.41;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold993 SAMTools SNP 11870 11870 69 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C7%2C0%2C3%3BMQ%3D50%3BFQ%3D72%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:99%2C0%2C190:99 scaffold993 SAMTools SNP 13783 13783 20.1 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 14534 14534 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 14544 14544 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 16924 16924 128 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C0%2C3%2C1%3BMQ%3D50%3BFQ%3D47%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:158%2C0%2C74:77 scaffold993 SAMTools SNP 17136 17136 119 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0261%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C6%2C2%2C2%3BMQ%3D50%3BFQ%3D122%3BPV4%3D0.55%2C0.29%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:149%2C0%2C255:99 scaffold993 SAMTools SNP 17392 17392 4.77 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0374%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C3%2C1%2C1%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.4%2C1.4e-06%2C1%2C0.00021;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C112:33 scaffold993 SAMTools SNP 50840 50840 35.8 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0220%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:67%2C6%2C0:10 scaffold993 SAMTools SNP 109107 109107 68.8 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0096%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold993 SAMTools SNP 122897 122897 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D23%2C15%2C16%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.014%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 122912 122912 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D64%3BVDB%3D0.0447%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D22%2C10%2C24%2C8%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.78%2C0.22%2C1%2C0.023;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 124379 124379 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D89%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D18%2C22%2C15%2C15%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.81%2C0.26%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 124631 124631 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D82%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C23%2C59%3BMQ%3D50%3BFQ%3D-274;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C247%2C0:99 scaffold993 SAMTools SNP 124797 124797 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D44%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C17%2C2%2C24%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.065%2C1%2C0.26;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 124827 124827 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D26%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C22%3BMQ%3D50%3BFQ%3D-105;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C78%2C0:99 scaffold993 SAMTools SNP 125046 125046 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C17%2C1%3BMQ%3D50%3BFQ%3D-81;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C54%2C0:99 scaffold993 SAMTools SNP 129360 129360 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 130165 130165 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D65%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C63%2C2%3BMQ%3D50%3BFQ%3D-223;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C196%2C0:99 scaffold993 SAMTools SNP 130852 130852 214 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D85%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C29%2C1%2C20%3BMQ%3D50%3BFQ%3D217%3BPV4%3D0.0017%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:244%2C0%2C255:99 scaffold993 SAMTools SNP 138284 138284 186 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C0%2C10%2C0%3BMQ%3D50%3BFQ%3D151%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:216%2C0%2C178:99 scaffold993 SAMTools SNP 138987 138987 48 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D29%2C3%2C10%2C0%3BMQ%3D50%3BFQ%3D51%3BPV4%3D1%2C0.0015%2C1%2C0.019;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold993 SAMTools SNP 139011 139011 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C12%2C9%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.76%2C1%2C1%2C0.042;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 139311 139311 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C19%2C12%2C20%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.47%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 139367 139367 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C32%3BMQ%3D50%3BFQ%3D-171;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C144%2C0:99 scaffold993 SAMTools SNP 140219 140219 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D48%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C19%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.37%2C0.43%2C1%2C0.3;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 140448 140448 225 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0367%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C7%2C11%2C9%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.36%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 140481 140481 121 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D56%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C28%2C0%2C9%3BMQ%3D50%3BFQ%3D124%3BPV4%3D0.57%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:151%2C0%2C255:99 scaffold993 SAMTools SNP 141121 141121 188 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C3%2C2%2C4%3BMQ%3D50%3BFQ%3D161%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:218%2C0%2C188:99 scaffold993 SAMTools SNP 141581 141581 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold993 SAMTools SNP 141613 141613 174 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C5%2C1%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.29%2C1%2C0.47;FORMAT=GT:PL:GQ;SAMPLE=0/1:204%2C0%2C116:99 scaffold993 SAMTools SNP 141621 141621 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0245%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C1%2C1%2C2%3BMQ%3D50%3BFQ%3D89%3BPV4%3D0.23%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C204:99 scaffold993 SAMTools SNP 141808 141808 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.045%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C254:60 scaffold993 SAMTools SNP 141916 141916 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D43%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C18%2C23%3BMQ%3D50%3BFQ%3D-150;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C123%2C0:99 scaffold993 SAMTools SNP 142111 142111 206 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C17%2C3%2C5%3BMQ%3D50%3BFQ%3D209%3BPV4%3D0.31%2C0.3%2C1%2C0.098;FORMAT=GT:PL:GQ;SAMPLE=0/1:236%2C0%2C255:99 scaffold993 SAMTools SNP 142189 142189 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C6%2C3%2C7%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.11%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 142419 142419 86 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0354%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D89%3BPV4%3D1%2C1%2C1%2C0.052;FORMAT=GT:PL:GQ;SAMPLE=0/1:116%2C0%2C224:99 scaffold993 SAMTools SNP 142434 142434 132 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0033%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C6%2C0%3BMQ%3D50%3BFQ%3D135%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:162%2C0%2C251:99 scaffold993 SAMTools SNP 143170 143170 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D42%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C9%2C2%2C17%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0028%2C3e-05%2C1%2C6.8e-06;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 143438 143438 211 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D76%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C39%2C0%2C32%3BMQ%3D50%3BFQ%3D214%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C255:99 scaffold993 SAMTools SNP 143456 143456 225 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D77%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C32%2C2%2C33%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C0.062%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 143561 143561 94 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0063%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C2%2C2%2C1%3BMQ%3D50%3BFQ%3D94%3BPV4%3D1%2C0.42%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:124%2C0%2C124:99 scaffold993 SAMTools SNP 144520 144520 4.13 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D4%2C1%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.33%2C1%2C1%2C0.043;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C186:31 scaffold993 SAMTools SNP 144571 144571 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 144675 144675 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0372%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 144683 144683 89 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C9%2C0%2C4%3BMQ%3D50%3BFQ%3D92%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:119%2C0%2C254:99 scaffold993 SAMTools SNP 144694 144694 211 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C1%2C8%3BMQ%3D50%3BFQ%3D165%3BPV4%3D1%2C0.21%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:241%2C0%2C192:99 scaffold993 SAMTools SNP 144871 144871 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C13%3BMQ%3D50%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold993 SAMTools SNP 145522 145522 33 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C2%2C0%2C2%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.13%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C250:66 scaffold993 SAMTools SNP 145587 145587 210 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0445%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C13%2C6%3BMQ%3D50%3BFQ%3D-84;FORMAT=GT:PL:GQ;SAMPLE=1/1:243%2C57%2C0:99 scaffold993 SAMTools SNP 146256 146256 18.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0111%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C10%2C0%2C2%3BMQ%3D50%3BFQ%3D21%3BPV4%3D1%2C1%2C1%2C0.0018;FORMAT=GT:PL:GQ;SAMPLE=0/1:48%2C0%2C255:51 scaffold993 SAMTools SNP 147352 147352 141 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D21%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C1%2C3%2C2%3BMQ%3D50%3BFQ%3D144%3BPV4%3D0.19%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:171%2C0%2C255:99 scaffold993 SAMTools SNP 147942 147942 225 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D102%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D56%2C10%2C10%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.0025%2C1%2C1%2C0.035;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 148146 148146 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D91%3BVDB%3D0.0006%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C86%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold993 SAMTools SNP 148201 148201 15.1 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C10%2C0%2C3%3BMQ%3D50%3BFQ%3D18.1%3BPV4%3D0.54%2C1%2C1%2C0.077;FORMAT=GT:PL:GQ;SAMPLE=0/1:45%2C0%2C255:48 scaffold993 SAMTools SNP 148203 148203 4.13 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0250%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D3%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C0.14;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C200:31 scaffold993 SAMTools SNP 149193 149193 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0297%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C16%2C5%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 149217 149217 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D36%3BVDB%3D0.0093%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C24%2C11%3BMQ%3D50%3BFQ%3D-100%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C73%2C0:99 scaffold993 SAMTools SNP 149718 149718 33 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0429%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D16%2C10%2C8%2C8%3BMQ%3D50%3BFQ%3D36%3BPV4%3D0.53%2C2.2e-25%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:63%2C0%2C255:66 scaffold993 SAMTools SNP 149821 149821 185 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0002%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C26%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C84%2C0:99 scaffold993 SAMTools SNP 150486 150486 8.64 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C20%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D1%2C2.2e-30%2C1%2C0.43;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C193:40 scaffold993 SAMTools SNP 150759 150759 22 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:54%2C9%2C0:15 scaffold993 SAMTools SNP 152123 152123 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D62%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D12%2C5%2C33%2C10%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.74%2C2e-40%2C1%2C0.062;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 152162 152162 40 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C4%2C21%2C2%3BMQ%3D50%3BFQ%3D43%3BPV4%3D0.67%2C5.9e-23%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C255:73 scaffold993 SAMTools SNP 152411 152411 4.77 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0033%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D4%2C5%2C1%2C7%3BMQ%3D50%3BFQ%3D6.99%3BPV4%3D0.29%2C1.4e-08%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:33%2C0%2C255:33 scaffold993 SAMTools SNP 152450 152450 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D47%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D17%2C5%2C22%2C3%3BMQ%3D50%3BFQ%3D70%3BPV4%3D0.45%2C7.4e-31%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C255:99 scaffold993 SAMTools SNP 152957 152957 20.1 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 153167 153167 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D211%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D7%2C39%2C7%2C140%3BMQ%3D50%3BFQ%3D51%3BPV4%3D0.044%2C9.9e-135%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:78%2C0%2C255:81 scaffold993 SAMTools SNP 155031 155031 67 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0001%3BAF1%3D0.5025%3BAC1%3D1%3BDP4%3D0%2C1%2C4%2C5%3BMQ%3D50%3BFQ%3D-7.78%3BPV4%3D1%2C5.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:97%2C0%2C20:23 scaffold993 SAMTools SNP 155149 155149 25.3 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C1%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:58%2C15%2C0:27 scaffold993 SAMTools SNP 155327 155327 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0169%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D7%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.00058%2C2.6e-14%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C184:31 scaffold993 SAMTools SNP 155423 155423 142 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C30%2C6%3BMQ%3D50%3BFQ%3D-88%3BPV4%3D1%2C6.1e-12%2C1%2C0.25;FORMAT=GT:PL:GQ;SAMPLE=1/1:175%2C61%2C0:99 scaffold993 SAMTools SNP 155691 155691 40 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D31%3BVDB%3D0.0440%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C25%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:73%2C81%2C0:99 scaffold993 SAMTools SNP 156335 156335 58 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C9%2C1%2C13%3BMQ%3D50%3BFQ%3D61%3BPV4%3D0.56%2C3.4e-28%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:88%2C0%2C255:91 scaffold993 SAMTools SNP 161678 161678 68.8 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:100%2C6%2C0:10 scaffold993 SAMTools SNP 163775 163775 13.2 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0210%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C4%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.49%2C0.0057%2C1%2C0.029;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C255:46 scaffold993 SAMTools SNP 163778 163778 60 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D11%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C4%2C0%3BMQ%3D50%3BFQ%3D63%3BPV4%3D0.19%2C0.00072%2C1%2C0.014;FORMAT=GT:PL:GQ;SAMPLE=0/1:90%2C0%2C253:93 scaffold993 SAMTools SNP 163826 163826 152 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0003%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D19%2C6%2C10%2C0%3BMQ%3D50%3BFQ%3D155%3BPV4%3D0.15%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:182%2C0%2C255:99 scaffold993 SAMTools SNP 167278 167278 40 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D12.3%3BPV4%3D1%2C0%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:70%2C0%2C39:42 scaffold993 SAMTools SNP 172577 172577 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C1%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C6.9e-05%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold993 SAMTools SNP 172612 172612 162 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C6%3BMQ%3D50%3BFQ%3D-45;FORMAT=GT:PL:GQ;SAMPLE=1/1:195%2C18%2C0:33 scaffold993 SAMTools SNP 175329 175329 12 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0183%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:43%2C6%2C0:9 scaffold993 SAMTools SNP 175615 175615 99 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D102%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:129%2C0%2C174:99 scaffold993 SAMTools SNP 178284 178284 131 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0374%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C22%2C1%2C7%3BMQ%3D50%3BFQ%3D134%3BPV4%3D1%2C0.17%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C255:99 scaffold993 SAMTools SNP 178303 178303 58 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C2%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:90%2C9%2C0:16 scaffold993 SAMTools SNP 179514 179514 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0111%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold993 SAMTools SNP 184968 184968 7.77 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:39%2C9%2C0:11 scaffold993 SAMTools SNP 191542 191542 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 192879 192879 59.8 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0205%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold993 SAMTools SNP 193104 193104 171 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C2%2C4%2C2%3BMQ%3D50%3BFQ%3D174%3BPV4%3D0.58%2C0.073%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:201%2C0%2C255:99 scaffold993 SAMTools SNP 193113 193113 222 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D25%3BVDB%3D0.0335%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C12%2C2%3BMQ%3D50%3BFQ%3D-69;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C42%2C0:81 scaffold993 SAMTools SNP 193378 193378 164 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0435%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C9%2C0%2C8%3BMQ%3D50%3BFQ%3D167%3BPV4%3D1%2C0.44%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:194%2C0%2C206:99 scaffold993 SAMTools SNP 193935 193935 102 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0009%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C1%2C4%2C0%3BMQ%3D50%3BFQ%3D105%3BPV4%3D1%2C1%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:132%2C0%2C180:99 scaffold993 SAMTools SNP 193953 193953 72 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0026%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C2%2C3%2C0%3BMQ%3D50%3BFQ%3D75%3BPV4%3D0.5%2C0.088%2C1%2C0.31;FORMAT=GT:PL:GQ;SAMPLE=0/1:102%2C0%2C221:99 scaffold993 SAMTools SNP 193974 193974 74 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0051%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C3%3BMQ%3D50%3BFQ%3D77%3BPV4%3D1%2C1%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:104%2C0%2C158:99 scaffold993 SAMTools SNP 194001 194001 104 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0015%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C4%2C0%2C4%3BMQ%3D50%3BFQ%3D104%3BPV4%3D1%2C1%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:134%2C0%2C134:99 scaffold993 SAMTools SNP 195337 195337 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 195340 195340 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 195420 195420 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold993 SAMTools SNP 196006 196006 20.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0099%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 196009 196009 14.2 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5004%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D3.49%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C28:31 scaffold993 SAMTools SNP 198434 198434 20.1 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 198553 198553 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C2%2C0%2C1%3BMQ%3D50%3BFQ%3D7.8%3BPV4%3D1%2C0.17%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C83:34 scaffold993 SAMTools SNP 202920 202920 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0074%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold993 SAMTools SNP 207763 207763 53 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.33;FORMAT=GT:PL:GQ;SAMPLE=0/1:83%2C0%2C41:44 scaffold993 SAMTools SNP 208496 208496 13.2 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D10%3BVDB%3D0.0215%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C2%2C2%2C0%3BMQ%3D50%3BFQ%3D16.1%3BPV4%3D0.47%2C0.058%2C1%2C0.072;FORMAT=GT:PL:GQ;SAMPLE=0/1:43%2C0%2C152:46 scaffold993 SAMTools SNP 208602 208602 183 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:216%2C15%2C0:27 scaffold993 SAMTools SNP 209491 209491 76 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0141%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:108%2C9%2C0:16 scaffold993 SAMTools SNP 209625 209625 20.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C1%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold993 SAMTools SNP 209982 209982 27 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0220%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C0%2C2%3BMQ%3D50%3BFQ%3D30%3BPV4%3D1%2C0.2%2C1%2C0.27;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C151:60 scaffold993 SAMTools SNP 210019 210019 177 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0009%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C7%3BMQ%3D50%3BFQ%3D-48;FORMAT=GT:PL:GQ;SAMPLE=1/1:210%2C21%2C0:39 scaffold993 SAMTools SNP 210089 210089 5.46 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D7.46%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:34%2C0%2C44:34 scaffold993 SAMTools SNP 210586 210586 121 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D6%3BVDB%3D0.0270%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C4%2C0%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold993 SAMTools SNP 210614 210614 4.13 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C3%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C201:31 scaffold993 SAMTools SNP 210868 210868 36 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D9%3BVDB%3D0.0146%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C2%2C0%3BMQ%3D50%3BFQ%3D39%3BPV4%3D0.5%2C0.29%2C1%2C0.18;FORMAT=GT:PL:GQ;SAMPLE=0/1:66%2C0%2C255:69 scaffold993 SAMTools SNP 211128 211128 80 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0002%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D5%2C5%2C3%2C1%3BMQ%3D50%3BFQ%3D83%3BPV4%3D0.58%2C0.00021%2C1%2C0.19;FORMAT=GT:PL:GQ;SAMPLE=0/1:110%2C0%2C255:99 scaffold993 SAMTools SNP 211565 211565 113 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0025%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D116%3BPV4%3D0.58%2C1%2C1%2C0.35;FORMAT=GT:PL:GQ;SAMPLE=0/1:143%2C0%2C255:99 scaffold993 SAMTools SNP 211574 211574 116 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0013%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C4%2C1%2C3%3BMQ%3D50%3BFQ%3D119%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:146%2C0%2C253:99 scaffold993 SAMTools SNP 211703 211703 123 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C4%2C3%2C2%3BMQ%3D50%3BFQ%3D126%3BPV4%3D1%2C0.11%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:153%2C0%2C255:99 scaffold993 SAMTools SNP 212038 212038 61 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C6%2C0%2C3%3BMQ%3D50%3BFQ%3D64%3BPV4%3D0.5%2C0.057%2C1%2C0.37;FORMAT=GT:PL:GQ;SAMPLE=0/1:91%2C0%2C255:94 scaffold993 SAMTools SNP 212094 212094 177 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D17%3BVDB%3D0.0200%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D6%2C5%2C3%2C3%3BMQ%3D50%3BFQ%3D180%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:207%2C0%2C255:99 scaffold993 SAMTools SNP 217162 217162 225 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D219%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D80%2C38%2C70%2C31%3BMQ%3D49%3BFQ%3D225%3BPV4%3D0.88%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 218097 218097 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D52%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D13%2C20%2C3%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.12%2C0.05%2C1%2C0.16;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 218347 218347 225 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D39%3BVDB%3D0.0350%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C11%2C15%2C2%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.017%2C0.0044%2C1%2C0.075;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold993 SAMTools SNP 219783 219783 222 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D70%3BVDB%3D0.0447%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C42%2C8%3BMQ%3D50%3BFQ%3D-178;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C151%2C0:99 scaffold993 SAMTools SNP 222003 222003 225 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D237%3BVDB%3D0.0115%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D124%2C28%2C59%2C6%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.1%2C1%2C1%2C0.021;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold998 SAMTools SNP 1461 1461 20.1 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D1%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold998 SAMTools SNP 1486 1486 14.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D2%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold998 SAMTools SNP 1506 1506 14.2 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:44%2C0%2C44:44 scaffold998 SAMTools SNP 1691 1691 3.98 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0237%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:33%2C6%2C0:5 scaffold998 SAMTools SNP 6345 6345 94 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D121%3BVDB%3D0.0057%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C31%2C2%3BMQ%3D49%3BFQ%3D-126;FORMAT=GT:PL:GQ;SAMPLE=1/1:127%2C99%2C0:99 scaffold998 SAMTools SNP 6412 6412 82 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C9%3BMQ%3D50%3BFQ%3D-54;FORMAT=GT:PL:GQ;SAMPLE=1/1:115%2C27%2C0:51 scaffold998 SAMTools SNP 6587 6587 100 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D19%3BVDB%3D0.0394%3BAF1%3D0.5163%3BAC1%3D1%3BDP4%3D0%2C1%2C0%2C6%3BMQ%3D50%3BFQ%3D-15.1%3BPV4%3D1%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:130%2C0%2C12:15 scaffold998 SAMTools SNP 6705 6705 204 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D16%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C16%2C0%3BMQ%3D48%3BFQ%3D-75;FORMAT=GT:PL:GQ;SAMPLE=1/1:237%2C48%2C0:93 scaffold998 SAMTools SNP 6995 6995 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D29%3BVDB%3D0.0302%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C26%3BMQ%3D50%3BFQ%3D-108;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C81%2C0:99 scaffold998 SAMTools SNP 7306 7306 27 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D106%3BVDB%3D0.0169%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C4%2C3%2C1%3BMQ%3D50%3BFQ%3D30%3BPV4%3D0.21%2C7.7e-08%2C1%2C0.012;FORMAT=GT:PL:GQ;SAMPLE=0/1:57%2C0%2C182:60 scaffold998 SAMTools SNP 8059 8059 225 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D74%3BVDB%3D0.0233%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D4%2C3%2C59%2C6%3BMQ%3D50%3BFQ%3D55%3BPV4%3D0.038%2C5.7e-32%2C1%2C0.13;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C82:85 scaffold998 SAMTools SNP 8236 8236 20.1 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D63%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D-30;FORMAT=GT:PL:GQ;SAMPLE=1/1:50%2C3%2C0:6 scaffold998 SAMTools SNP 8460 8460 185 . . REF=C;ALT=G;FILTER=.;INFO=DP%3D99%3BVDB%3D0.0367%3BAF1%3D1%3BAC1%3D2%3BDP4%3D1%2C0%2C42%2C47%3BMQ%3D49%3BFQ%3D-248%3BPV4%3D0.48%2C4.1e-13%2C0.44%2C1;FORMAT=GT:PL:GQ;SAMPLE=1/1:218%2C221%2C0:99 scaffold998 SAMTools SNP 9487 9487 16.1 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D24%3BVDB%3D0.0302%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C4%2C8%2C0%3BMQ%3D50%3BFQ%3D19.1%3BPV4%3D0.13%2C9.5e-10%2C1%2C0.057;FORMAT=GT:PL:GQ;SAMPLE=0/1:46%2C0%2C255:49 scaffold998 SAMTools SNP 25203 25203 222 . . REF=T;ALT=G;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0018%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C15%3BMQ%3D48%3BFQ%3D-72;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C45%2C0:87 scaffold998 SAMTools SNP 25556 25556 11.3 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C1%2C1%2C0.11;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold998 SAMTools SNP 25558 25558 11.3 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C1%2C1%2C0%3BMQ%3D50%3BFQ%3D14.2%3BPV4%3D1%2C0%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:41%2C0%2C91:43 scaffold998 SAMTools SNP 25958 25958 84 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0134%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C0%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.25%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:114%2C0%2C38:41 scaffold998 SAMTools SNP 25965 25965 131 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0299%3BAF1%3D0.5001%3BAC1%3D1%3BDP4%3D0%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.4%2C0.19%2C1%2C0.39;FORMAT=GT:PL:GQ;SAMPLE=0/1:161%2C0%2C35:38 scaffold998 SAMTools SNP 28031 28031 93 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0100%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:125%2C9%2C0:16 scaffold998 SAMTools SNP 38027 38027 5.29 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0051%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:35%2C6%2C0:6 scaffold998 SAMTools SNP 60288 60288 76 . . REF=G;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0169%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C7%2C1%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:109%2C24%2C0:45 scaffold998 SAMTools SNP 60379 60379 69 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D8%3BVDB%3D0.0000%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C8%3BMQ%3D50%3BFQ%3D-51;FORMAT=GT:PL:GQ;SAMPLE=1/1:102%2C24%2C0:45 scaffold999 SAMTools SNP 23270 23270 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D38%3BVDB%3D0.0057%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D3%2C18%2C1%2C16%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.61%2C0.36%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold999 SAMTools SNP 39174 39174 48 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D28%3BVDB%3D0.0044%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C28%2C0%3BMQ%3D50%3BFQ%3D-111;FORMAT=GT:PL:GQ;SAMPLE=1/1:81%2C84%2C0:99 scaffold999 SAMTools SNP 39436 39436 225 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D45%3BVDB%3D0.0268%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D11%2C7%2C11%2C12%3BMQ%3D50%3BFQ%3D225%3BPV4%3D0.53%2C0.086%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold999 SAMTools SNP 39845 39845 167 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D18%3BVDB%3D0.0445%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D1%2C5%2C5%2C1%3BMQ%3D50%3BFQ%3D168%3BPV4%3D0.08%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:197%2C0%2C200:99 scaffold999 SAMTools SNP 40043 40043 222 . . REF=A;ALT=T;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C8%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold999 SAMTools SNP 45340 45340 39 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D129%3BVDB%3D0.0417%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D21%2C45%2C0%2C32%3BMQ%3D50%3BFQ%3D42%3BPV4%3D0.00012%2C1.5e-11%2C1%2C0.17;FORMAT=GT:PL:GQ;SAMPLE=0/1:69%2C0%2C255:72 scaffold999 SAMTools SNP 47660 47660 4.13 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D6%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D5%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D1%2C0.3%2C1%2C0;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C161:31 scaffold999 SAMTools SNP 47711 47711 160 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D13%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C7%2C0%3BMQ%3D50%3BFQ%3D85%3BPV4%3D0.3%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:190%2C0%2C112:99 scaffold999 SAMTools SNP 48546 48546 146 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D41%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D10%2C0%2C3%2C2%3BMQ%3D50%3BFQ%3D149%3BPV4%3D0.095%2C1%2C1%2C0.02;FORMAT=GT:PL:GQ;SAMPLE=0/1:176%2C0%2C217:99 scaffold999 SAMTools SNP 48603 48603 222 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D14%3BVDB%3D0.0417%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C10%2C3%3BMQ%3D50%3BFQ%3D-66;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C39%2C0:75 scaffold999 SAMTools SNP 48973 48973 121 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0019%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C4%3BMQ%3D50%3BFQ%3D-39;FORMAT=GT:PL:GQ;SAMPLE=1/1:153%2C12%2C0:21 scaffold999 SAMTools SNP 52080 52080 222 . . REF=G;ALT=C;FILTER=.;INFO=DP%3D67%3BVDB%3D0.0001%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C67%2C0%3BMQ%3D50%3BFQ%3D-229;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C202%2C0:99 scaffold999 SAMTools SNP 52114 52114 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D75%3BVDB%3D0.0003%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C75%2C0%3BMQ%3D50%3BFQ%3D-253;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C226%2C0:99 scaffold999 SAMTools SNP 53752 53752 222 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D128%3BVDB%3D0.0141%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D36%2C24%2C26%2C3%3BMQ%3D50%3BFQ%3D223%3BPV4%3D0.006%2C1%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:252%2C0%2C255:99 scaffold999 SAMTools SNP 53788 53788 225 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D215%3BVDB%3D0.0394%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D69%2C41%2C55%2C4%3BMQ%3D50%3BFQ%3D225%3BPV4%3D8.1e-06%2C1%2C1%2C0.044;FORMAT=GT:PL:GQ;SAMPLE=0/1:255%2C0%2C255:99 scaffold999 SAMTools SNP 56427 56427 222 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D182%3BVDB%3D0.0435%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C98%2C84%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold999 SAMTools SNP 56444 56444 222 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D122%3BVDB%3D0.0268%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C40%2C82%3BMQ%3D50%3BFQ%3D-282;FORMAT=GT:PL:GQ;SAMPLE=1/1:255%2C255%2C0:99 scaffold999 SAMTools SNP 56497 56497 4.13 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D105%3BVDB%3D0.0302%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D12%2C75%2C0%2C18%3BMQ%3D50%3BFQ%3D6.2%3BPV4%3D0.12%2C1.5e-11%2C1%2C0.0059;FORMAT=GT:PL:GQ;SAMPLE=0/1:32%2C0%2C255:31 scaffold999 SAMTools SNP 57895 57895 191 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D35%3BVDB%3D0.0073%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C14%2C0%2C12%3BMQ%3D50%3BFQ%3D194%3BPV4%3D1%2C1%2C1%2C0.0072;FORMAT=GT:PL:GQ;SAMPLE=0/1:221%2C0%2C233:99 scaffold999 SAMTools SNP 70634 70634 37.3 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D5%3BVDB%3D0.0396%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C5%2C0%3BMQ%3D50%3BFQ%3D-42;FORMAT=GT:PL:GQ;SAMPLE=1/1:70%2C15%2C0:27 scaffold999 SAMTools SNP 73714 73714 6.2 . . REF=T;ALT=C;FILTER=.;INFO=DP%3D5%3BAF1%3D0.4999%3BAC1%3D1%3BDP4%3D0%2C4%2C1%2C0%3BMQ%3D50%3BFQ%3D8.65%3BPV4%3D0.2%2C0.0036%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:35%2C0%2C140:36 scaffold999 SAMTools SNP 73801 73801 95 . . REF=C;ALT=A;FILTER=.;INFO=DP%3D15%3BVDB%3D0.0001%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D9%2C1%2C5%2C0%3BMQ%3D50%3BFQ%3D98%3BPV4%3D1%2C0.0019%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:125%2C0%2C249:99 scaffold999 SAMTools SNP 73945 73945 8.64 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D12%3BVDB%3D0.0093%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D0%2C5%2C2%2C4%3BMQ%3D50%3BFQ%3D11.3%3BPV4%3D0.45%2C3.8e-15%2C1%2C0.45;FORMAT=GT:PL:GQ;SAMPLE=0/1:38%2C0%2C152:40 scaffold999 SAMTools SNP 74631 74631 19.1 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D7%3BVDB%3D0.0040%3BAF1%3D0.5%3BAC1%3D1%3BDP4%3D2%2C1%2C3%2C1%3BMQ%3D50%3BFQ%3D22%3BPV4%3D1%2C2.3e-09%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:49%2C0%2C121:52 scaffold999 SAMTools SNP 103103 103103 10.4 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0248%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:42%2C9%2C0:13 scaffold999 SAMTools SNP 103481 103481 3.41 . . REF=A;ALT=G;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0173%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:32%2C6%2C0:4 scaffold999 SAMTools SNP 107474 107474 3.54 . . REF=A;ALT=C;FILTER=.;INFO=DP%3D3%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D2%2C0%2C1%2C0%3BMQ%3D50%3BFQ%3D5.47%3BPV4%3D1%2C0%2C1%2C1;FORMAT=GT:PL:GQ;SAMPLE=0/1:31%2C0%2C83:30 scaffold999 SAMTools SNP 113191 113191 6.79 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0217%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C1%2C1%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:37%2C6%2C0:7 scaffold999 SAMTools SNP 115369 115369 59.8 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0202%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C2%2C0%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:91%2C6%2C0:10 scaffold999 SAMTools SNP 126109 126109 21 . . REF=C;ALT=T;FILTER=.;INFO=DP%3D3%3BVDB%3D0.0200%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C3%2C0%3BMQ%3D50%3BFQ%3D-36;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C9%2C0:15 scaffold999 SAMTools SNP 126196 126196 3.01 . . REF=T;ALT=A;FILTER=.;INFO=DP%3D4%3BVDB%3D0.0245%3BAF1%3D0.4998%3BAC1%3D1%3BDP4%3D1%2C0%2C0%2C3%3BMQ%3D50%3BFQ%3D4.36%3BPV4%3D0.25%2C0.0041%2C1%2C0.22;FORMAT=GT:PL:GQ;SAMPLE=0/1:30%2C0%2C38:28 scaffold999 SAMTools SNP 128128 128128 21.8 . . REF=G;ALT=T;FILTER=.;INFO=DP%3D2%3BVDB%3D0.0215%3BAF1%3D1%3BAC1%3D2%3BDP4%3D0%2C0%2C0%2C2%3BMQ%3D50%3BFQ%3D-33;FORMAT=GT:PL:GQ;SAMPLE=1/1:53%2C6%2C0:10